RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14529
         (59 letters)



>d1p7hl1 b.1.18.1 (L:576-678) T-cell transcription factor NFAT1
          (NFATC2) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 103

 Score = 37.2 bits (86), Expect = 9e-06
 Identities = 10/33 (30%), Positives = 13/33 (39%)

Query: 21 VSDNIPSEGWTSGGATVIIVGDNFFDGLQVVFG 53
          V           GG  +I+ G NF    +VVF 
Sbjct: 5  VERQDTDSCLVYGGQQMILTGQNFTSESKVVFT 37


>d3brda1 b.1.18.1 (A:542-660) DNA-binding protein LAG-1 (CSL)
          {Caenorhabditis elegans [TaxId: 6239]}
          Length = 119

 Score = 29.8 bits (67), Expect = 0.008
 Identities = 8/37 (21%), Positives = 12/37 (32%), Gaps = 2/37 (5%)

Query: 17 PLLAVSDNIPSEGWTSGGATVIIVGDNFFDGLQVVFG 53
          P   V          +    +   G +F   L+V FG
Sbjct: 20 PCPVVGSLEVDGHGEASRVELH--GRDFKPNLKVWFG 54


>d2nxya1 d.172.1.1 (A:83-491) gp120 core {Human immunodeficiency
           virus type 1 [TaxId: 11676]}
          Length = 316

 Score = 27.4 bits (61), Expect = 0.082
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)

Query: 7   VISTQVGVDGPLLAVSDNIPSEGWTSGGATVIIV 40
           V+STQ+ ++G L      I S  +T   A  IIV
Sbjct: 108 VVSTQLLLNGSLAEEEVVIRSVNFTD-NAKTIIV 140


>d1imhc1 b.1.18.1 (C:368-468) T-cell transcription factor NFAT5
          (TONEBP) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 101

 Score = 24.7 bits (54), Expect = 0.53
 Identities = 8/21 (38%), Positives = 12/21 (57%)

Query: 32 SGGATVIIVGDNFFDGLQVVF 52
           G   V ++G NF  G +V+F
Sbjct: 15 KGEEEVFLIGKNFLKGTKVIF 35


>d2cxka1 b.1.18.1 (A:872-953) Calmodulin binding transcription
          activator 1 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 82

 Score = 24.5 bits (52), Expect = 0.62
 Identities = 8/38 (21%), Positives = 12/38 (31%)

Query: 21 VSDNIPSEGWTSGGATVIIVGDNFFDGLQVVFGTMLVW 58
          V+D  P   +  GG  V+I G               + 
Sbjct: 2  VTDYSPEWSYPEGGVKVLITGPWQEASNNYSCLFDQIS 39


>d1my7a_ b.1.18.1 (A:) p65 subunit of NF-kappa B (NFKB),
          dimerization domain {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 107

 Score = 24.3 bits (53), Expect = 0.67
 Identities = 5/22 (22%), Positives = 11/22 (50%), Gaps = 1/22 (4%)

Query: 32 SGGATVIIVGDNFF-DGLQVVF 52
           GG  + ++ D    + ++V F
Sbjct: 17 LGGDEIFLLCDKVQKEDIEVYF 38


>d1a3qa1 b.1.18.1 (A:227-327) p52 subunit of NF-kappa B (NFKB)
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 101

 Score = 24.2 bits (53), Expect = 0.80
 Identities = 7/22 (31%), Positives = 11/22 (50%), Gaps = 1/22 (4%)

Query: 32 SGGATVIIVGDNFF-DGLQVVF 52
           GG  V ++ D    D ++V F
Sbjct: 15 RGGDEVYLLCDKVQKDDIEVRF 36


>d1qhoa1 b.1.18.2 (A:496-576) Five domain "maltogenic"
          alpha-amylase (glucan 1,4-alpha-maltohydrolase), domain
          D {Bacillus stearothermophilus [TaxId: 1422]}
          Length = 81

 Score = 23.4 bits (50), Expect = 1.5
 Identities = 8/33 (24%), Positives = 10/33 (30%), Gaps = 2/33 (6%)

Query: 21 VSDNIPSEGWTSGGATVIIVGDNFFDGLQVVFG 53
          +    P+ G    G  V I G  F      V  
Sbjct: 6  IGSVAPNMG--IPGNVVTIDGKGFGTTQGTVTF 36


>d1u36a_ b.1.18.1 (A:) p50 subunit of NF-kappa B transcription
          factor {Human (Homo sapiens) [TaxId: 9606]}
          Length = 104

 Score = 22.8 bits (49), Expect = 2.6
 Identities = 6/22 (27%), Positives = 12/22 (54%), Gaps = 1/22 (4%)

Query: 32 SGGATVIIVGDNFF-DGLQVVF 52
          +GG  + ++ D    D +Q+ F
Sbjct: 15 TGGEEIWLLCDKVQKDDIQIRF 36


>d1am5a_ b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus morhua)
           [TaxId: 8049]}
          Length = 324

 Score = 22.6 bits (47), Expect = 4.0
 Identities = 7/29 (24%), Positives = 12/29 (41%)

Query: 24  NIPSEGWTSGGATVIIVGDNFFDGLQVVF 52
            + S G  S  + + I GD F      ++
Sbjct: 283 GLGSSGVPSNTSELWIFGDVFLRNYYTIY 311


>g1htr.1 b.50.1.2 (P:,B:) Pepsin(ogen) {Human (Homo sapiens),
           progastricsin (pepsinogen C) [TaxId: 9606]}
          Length = 372

 Score = 22.6 bits (47), Expect = 4.3
 Identities = 7/27 (25%), Positives = 12/27 (44%)

Query: 26  PSEGWTSGGATVIIVGDNFFDGLQVVF 52
           P+   +  G  + I+GD F      V+
Sbjct: 333 PTYLSSQNGQPLWILGDVFLRSYYSVY 359


>d1miqa_ b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading enzyme)
           {Plasmodium vivax [TaxId: 5855]}
          Length = 373

 Score = 22.2 bits (46), Expect = 4.8
 Identities = 6/22 (27%), Positives = 8/22 (36%)

Query: 31  TSGGATVIIVGDNFFDGLQVVF 52
               +   I+GD F      VF
Sbjct: 338 VDIDSNTFILGDPFMRKYFTVF 359


>d1qdma2 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase,
           phytepsin {Barley (Hordeum vulgare) [TaxId: 4513]}
          Length = 337

 Score = 21.9 bits (45), Expect = 7.2
 Identities = 6/28 (21%), Positives = 9/28 (32%)

Query: 25  IPSEGWTSGGATVIIVGDNFFDGLQVVF 52
             +         + I+GD F      VF
Sbjct: 297 FTAMDIPPPRGPLWILGDVFMGPYHTVF 324


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.141    0.435 

Gapped
Lambda     K      H
   0.267   0.0425    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 226,109
Number of extensions: 7693
Number of successful extensions: 42
Number of sequences better than 10.0: 1
Number of HSP's gapped: 42
Number of HSP's successfully gapped: 31
Length of query: 59
Length of database: 2,407,596
Length adjustment: 29
Effective length of query: 30
Effective length of database: 2,009,426
Effective search space: 60282780
Effective search space used: 60282780
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)