BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy1453
         (262 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1GKY|A Chain A, Refined Structure Of The Complex Between Guanylate Kinase
           And Its Substrate Gmp At 2.0 Angstroms Resolution
          Length = 187

 Score = 29.6 bits (65), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 3/62 (4%)

Query: 60  EENAKKAEIVQVVSFKRLCSRDDCKEWAQLA--WGPATIEPVMQEASPNSPTLIGDLMQT 117
           E N K    V V  FK +   ++  EWAQ +  +  +T+  V Q  S +  T I D+   
Sbjct: 45  EVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGSTVASVKQ-VSKSGKTCILDIDMQ 103

Query: 118 GV 119
           GV
Sbjct: 104 GV 105


>pdb|1EX6|A Chain A, Crystal Structure Of Unliganded Form Of Guanylate Kinase
           From Yeast
 pdb|1EX6|B Chain B, Crystal Structure Of Unliganded Form Of Guanylate Kinase
           From Yeast
 pdb|1EX7|A Chain A, Crystal Structure Of Yeast Guanylate Kinase In Complex
           With Guanosine-5'-Monophosphate
          Length = 186

 Score = 29.6 bits (65), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 3/62 (4%)

Query: 60  EENAKKAEIVQVVSFKRLCSRDDCKEWAQLA--WGPATIEPVMQEASPNSPTLIGDLMQT 117
           E N K    V V  FK +   ++  EWAQ +  +  +T+  V Q  S +  T I D+   
Sbjct: 44  EVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGSTVASVKQ-VSKSGKTCILDIDMQ 102

Query: 118 GV 119
           GV
Sbjct: 103 GV 104


>pdb|4F4J|A Chain A, Conversion Of The Enzyme Guanylate Kinase Into A Mitotic
           Spindle Orienting Protein By A Single Mutation That
           Inhibits Gmp- Induced Closing
 pdb|4F4J|B Chain B, Conversion Of The Enzyme Guanylate Kinase Into A Mitotic
           Spindle Orienting Protein By A Single Mutation That
           Inhibits Gmp- Induced Closing
          Length = 202

 Score = 29.3 bits (64), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 3/62 (4%)

Query: 60  EENAKKAEIVQVVSFKRLCSRDDCKEWAQLA--WGPATIEPVMQEASPNSPTLIGDLMQT 117
           E N K    V V  FK +   ++  EWAQ +  +  +T+  V Q  S +  T I D+   
Sbjct: 60  EVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGSTVASVKQ-VSKSGKTCILDIDMQ 118

Query: 118 GV 119
           GV
Sbjct: 119 GV 120


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.314    0.126    0.348 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,249,445
Number of Sequences: 62578
Number of extensions: 222020
Number of successful extensions: 580
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 575
Number of HSP's gapped (non-prelim): 22
length of query: 262
length of database: 14,973,337
effective HSP length: 97
effective length of query: 165
effective length of database: 8,903,271
effective search space: 1469039715
effective search space used: 1469039715
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 50 (23.9 bits)