BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1453
(262 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9H6F5|CCD86_HUMAN Coiled-coil domain-containing protein 86 OS=Homo sapiens GN=CCDC86
PE=1 SV=1
Length = 360
Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/49 (73%), Positives = 44/49 (89%)
Query: 207 AENIKRREENAKKAEIVQVIKNPAKLKRMKKKQLRLIEKRDTLPIVEKR 255
AEN+KRR EN +KAE+VQVI+NPAKLKR KKKQLR IEKRDTL +++K+
Sbjct: 303 AENLKRRLENERKAEVVQVIRNPAKLKRAKKKQLRSIEKRDTLALLQKQ 351
Score = 37.0 bits (84), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 44/69 (63%)
Query: 4 FSTMVKTPGLRRPHSEKEKLRAEIKHNKEMTRSILDAQARAKEEHRQRRAENIKRREENA 63
FS M++ LR K K R E K K+ R + + + R ++E +QRRAEN+KRR EN
Sbjct: 254 FSQMLQDKPLRTSWQRKMKERQERKLAKDFARHLEEEKERRRQEKKQRRAENLKRRLENE 313
Query: 64 KKAEIVQVV 72
+KAE+VQV+
Sbjct: 314 RKAEVVQVI 322
>sp|Q5RB69|CCD86_PONAB Coiled-coil domain-containing protein 86 OS=Pongo abelii GN=CCDC86
PE=2 SV=1
Length = 360
Score = 72.8 bits (177), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/49 (73%), Positives = 44/49 (89%)
Query: 207 AENIKRREENAKKAEIVQVIKNPAKLKRMKKKQLRLIEKRDTLPIVEKR 255
AEN+KRR EN +KAE+VQVI+NPAKLKR KKKQLR IEKRDTL +++K+
Sbjct: 303 AENLKRRLENERKAEVVQVIRNPAKLKRAKKKQLRSIEKRDTLALLQKQ 351
Score = 37.0 bits (84), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 44/69 (63%)
Query: 4 FSTMVKTPGLRRPHSEKEKLRAEIKHNKEMTRSILDAQARAKEEHRQRRAENIKRREENA 63
FS M++ LR K K R E K K+ R + + + R ++E +QRRAEN+KRR EN
Sbjct: 254 FSQMLQDKPLRTSWQRKMKERQERKLAKDFARHLEEEKERRRQEKKQRRAENLKRRLENE 313
Query: 64 KKAEIVQVV 72
+KAE+VQV+
Sbjct: 314 RKAEVVQVI 322
>sp|Q2TBX7|CCD86_BOVIN Coiled-coil domain-containing protein 86 OS=Bos taurus GN=CCDC86
PE=2 SV=1
Length = 354
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/43 (81%), Positives = 39/43 (90%)
Query: 207 AENIKRREENAKKAEIVQVIKNPAKLKRMKKKQLRLIEKRDTL 249
AEN++RR EN +KAEIVQVI+NPAKLKR KKKQLR IEKRDTL
Sbjct: 297 AENLRRRLENERKAEIVQVIRNPAKLKRAKKKQLRSIEKRDTL 339
Score = 37.4 bits (85), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 44/69 (63%)
Query: 4 FSTMVKTPGLRRPHSEKEKLRAEIKHNKEMTRSILDAQARAKEEHRQRRAENIKRREENA 63
FS MV+ LR K K R E K K+ R + + + R ++E ++RRAEN++RR EN
Sbjct: 248 FSQMVQDKPLRTSWQRKMKDRQERKLAKDFARHLEEEKERRRQEKKKRRAENLRRRLENE 307
Query: 64 KKAEIVQVV 72
+KAEIVQV+
Sbjct: 308 RKAEIVQVI 316
>sp|Q9JJ89|CCD86_MOUSE Coiled-coil domain-containing protein 86 OS=Mus musculus GN=Ccdc86
PE=1 SV=2
Length = 426
Score = 56.2 bits (134), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/49 (71%), Positives = 44/49 (89%)
Query: 207 AENIKRREENAKKAEIVQVIKNPAKLKRMKKKQLRLIEKRDTLPIVEKR 255
AEN++RR EN +KAEIVQVI+NPAKLK+ KKKQLR IEKRDTL +++K+
Sbjct: 369 AENLRRRLENERKAEIVQVIRNPAKLKKAKKKQLRSIEKRDTLALLQKQ 417
Score = 37.4 bits (85), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 44/69 (63%)
Query: 4 FSTMVKTPGLRRPHSEKEKLRAEIKHNKEMTRSILDAQARAKEEHRQRRAENIKRREENA 63
FS MV+ LR K K R E K K+ R + + + R ++E ++RRAEN++RR EN
Sbjct: 320 FSQMVQDKPLRTSWQRKMKERQERKLAKDFARHLEEEKQRRRQEKKERRAENLRRRLENE 379
Query: 64 KKAEIVQVV 72
+KAEIVQV+
Sbjct: 380 RKAEIVQVI 388
>sp|Q5XIB5|CCD86_RAT Coiled-coil domain-containing protein 86 OS=Rattus norvegicus
GN=Ccdc86 PE=2 SV=1
Length = 341
Score = 54.7 bits (130), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/49 (69%), Positives = 44/49 (89%)
Query: 207 AENIKRREENAKKAEIVQVIKNPAKLKRMKKKQLRLIEKRDTLPIVEKR 255
AEN++RR EN +KAEIVQVI+NPAKLK+ KKKQLR I+KRDTL +++K+
Sbjct: 284 AENLRRRLENERKAEIVQVIRNPAKLKKAKKKQLRSIQKRDTLALLQKQ 332
Score = 38.1 bits (87), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 44/69 (63%)
Query: 4 FSTMVKTPGLRRPHSEKEKLRAEIKHNKEMTRSILDAQARAKEEHRQRRAENIKRREENA 63
FS MV+ LR K K R E K K+ R + + + R ++E ++RRAEN++RR EN
Sbjct: 235 FSQMVQDKPLRTSWQRKMKERQERKLAKDFARHLEEEKQRRRQEKKERRAENLRRRLENE 294
Query: 64 KKAEIVQVV 72
+KAEIVQV+
Sbjct: 295 RKAEIVQVI 303
>sp|Q8IDX6|RBP2A_PLAF7 Reticulocyte-binding protein 2 homolog a OS=Plasmodium falciparum
(isolate 3D7) GN=PF13_0198 PE=3 SV=1
Length = 3130
Score = 36.2 bits (82), Expect = 0.21, Method: Composition-based stats.
Identities = 26/118 (22%), Positives = 60/118 (50%), Gaps = 3/118 (2%)
Query: 145 GLRRPHSEKEKLRAEIKHNKEMTRSILDAQARAKEEHRQRRAENIKRREENAKKAEIVQV 204
L+R E+ + E+K ++ + KEE +R+ + ++EE K+ E ++
Sbjct: 2738 ALKRQEQERLQKEEELKRQEQERLEREKQEQLQKEEELKRQEQERLQKEEALKRQEQERL 2797
Query: 205 RRAENIKRREENAKKAEIVQVIKNPAKLKRMKKKQLRLIEKRDTLPIVEKRKAAAQAE 262
++ E +KR+E+ + E + ++ +LKR ++++L +K + L E+ + + E
Sbjct: 2798 QKEEELKRQEQERLEREKQEQLQKEEELKRQEQERL---QKEEALKRQEQERLQKEEE 2852
>sp|P09790|IGA_NEIGO IgA-specific serine endopeptidase autotransporter OS=Neisseria
gonorrhoeae GN=iga PE=1 SV=1
Length = 1532
Score = 35.4 bits (80), Expect = 0.44, Method: Composition-based stats.
Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 4/86 (4%)
Query: 140 MVKTPGLRRPHSEKEKLRAEIKHNKEMTRSILDAQ--ARAKEEHRQRRAENIKRREENAK 197
+V P + + +E LR + K + + +A+ AR K+E +R+A I R++E A+
Sbjct: 1013 IVVAPPSPQANQAEEALRQQAKAEQVKRQQAAEAEKVARQKDEEAKRKAAEIARQQEEAR 1072
Query: 198 K-AEIVQVRRAE-NIKRREENAKKAE 221
K AE+ ++AE K RE +KAE
Sbjct: 1073 KAAELAAKQKAEAERKARELARQKAE 1098
>sp|Q876G9|MYO2_SACBA Myosin-2 OS=Saccharomyces bayanus GN=MYO2 PE=3 SV=2
Length = 1568
Score = 31.6 bits (70), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 53/95 (55%), Gaps = 8/95 (8%)
Query: 154 EKLRAEIKHNKEMTRSILDAQARAKEEHR-QRRAENIKRRE----ENAKKAEI-VQVRRA 207
+ L +++K NKEMT I + Q + +E + Q EN+K+ +N K ++ +Q
Sbjct: 954 QNLASKVKENKEMTERIKELQVQVEESAKLQETLENMKKEHLVNIDNQKNKDMELQKTIE 1013
Query: 208 ENIKRREENAKKA--EIVQVIKNPAKLKRMKKKQL 240
+N++ E+N K A E+ +++K +LK +KQL
Sbjct: 1014 DNLQSTEQNLKNAQLELEEMVKQHNELKEESRKQL 1048
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.127 0.347
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,195,286
Number of Sequences: 539616
Number of extensions: 3444177
Number of successful extensions: 31641
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 238
Number of HSP's successfully gapped in prelim test: 877
Number of HSP's that attempted gapping in prelim test: 25136
Number of HSP's gapped (non-prelim): 5675
length of query: 262
length of database: 191,569,459
effective HSP length: 115
effective length of query: 147
effective length of database: 129,513,619
effective search space: 19038501993
effective search space used: 19038501993
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)