Query psy1453
Match_columns 262
No_of_seqs 132 out of 154
Neff 3.5
Searched_HMMs 46136
Date Fri Aug 16 22:13:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1453.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1453hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4538|consensus 100.0 1.7E-32 3.7E-37 225.7 7.1 113 109-253 17-129 (130)
2 KOG4538|consensus 99.8 5.6E-21 1.2E-25 157.8 4.0 76 2-77 32-107 (130)
3 PF03879 Cgr1: Cgr1 family; I 99.7 2.4E-16 5.2E-21 128.4 9.5 102 109-242 2-103 (108)
4 PF03879 Cgr1: Cgr1 family; I 99.0 8.3E-10 1.8E-14 90.3 6.8 72 2-73 18-89 (108)
5 PTZ00121 MAEBL; Provisional 22.3 4.9E+02 0.011 31.2 9.1 26 196-221 1680-1705(2084)
6 PF13025 DUF3886: Protein of u 18.4 4.4E+02 0.0095 20.5 5.7 34 161-194 20-53 (70)
7 PTZ00266 NIMA-related protein 18.3 9.6E+02 0.021 27.1 10.3 10 76-85 268-277 (1021)
8 PF04822 Takusan: Takusan; In 17.5 24 0.00052 28.0 -1.4 19 69-87 28-46 (84)
9 KOG0163|consensus 16.0 6.5E+02 0.014 28.3 8.1 57 152-219 915-971 (1259)
10 KOG4364|consensus 15.4 9.1E+02 0.02 26.6 8.9 78 151-229 305-385 (811)
No 1
>KOG4538|consensus
Probab=99.97 E-value=1.7e-32 Score=225.68 Aligned_cols=113 Identities=45% Similarity=0.584 Sum_probs=108.5
Q ss_pred cccccccccccccccchhcccccCCcccccccccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1453 109 TLIGDLMQTGVWEPARRAFFDVRSDVGSFSTMVKTPGLRRPHSEKEKLRAEIKHNKEMTRSILDAQARAKEEHRQRRAEN 188 (262)
Q Consensus 109 al~gd~~srgvWk~q~~a~fdvrSdkkSfSsm~KtK~LktSw~~k~~~r~e~k~~k~~~~~i~~~~~~~~~~~k~~~~~~ 188 (262)
.+.|.|.|+++|++. +.||.|+++++|++||++||++++|..++++.+.+|+|.+.++..+++++
T Consensus 17 ip~gkpKs~r~wkt~-----------K~~s~~~k~k~lr~sw~kKm~lr~e~~~vK~~~~~i~ek~~~~rqeKkqR---- 81 (130)
T KOG4538|consen 17 IPWGKPKSERPWKTP-----------KKHSEIKKVKTLRSSWDKKMELRAEKDMVKRVQDNIREKQVQERQEKKQR---- 81 (130)
T ss_pred CCCCCCCcCCCccCH-----------HHHHHHHHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 478999999999987 47899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccceeecChHHHhhccHHHHhHhhhccchHHHh
Q psy1453 189 IKRREENAKKAEIVQVRRAENIKRREENAKKAEIVQVIKNPAKLKRMKKKQLRLIEKRDTLPIVE 253 (262)
Q Consensus 189 ~~~~~~~~~~~~~~~~~r~en~kRr~ENerKseiVQvI~n~aklKrm~KKqlr~i~krdt~~~~~ 253 (262)
|.||.+||+|||+||||||||+||||||+|+|||||+|++|||+.|++
T Consensus 82 -----------------rvEn~kRRLeNERkaEvVQvI~npaKLKr~KKkQlRsIekRDt~qv~~ 129 (130)
T KOG4538|consen 82 -----------------RVENEKRRLENERKAEVVQVITNPAKLKRTKKKQLRSIEKRDTTQVTK 129 (130)
T ss_pred -----------------HHHHHHHHHhhhHHHHHHHHHcCHHHHHHHHHHHHHHHHHhhhhHHhc
Confidence 999999999999999999999999999999999999999999999875
No 2
>KOG4538|consensus
Probab=99.82 E-value=5.6e-21 Score=157.79 Aligned_cols=76 Identities=38% Similarity=0.472 Sum_probs=73.9
Q ss_pred ccccccccCCCCCCChHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHhhhhccceeeeecccc
Q psy1453 2 ELFSTMVKTPGLRRPHSEKEKLRAEIKHNKEMTRSILDAQARAKEEHRQRRAENIKRREENAKKAEIVQVVSFKRL 77 (262)
Q Consensus 2 ~RfSsi~k~k~Lrtsw~kKm~~r~e~k~vKd~sr~lke~~~~ek~~kr~rR~en~KRr~ENeRKSEIVQvIt~~~~ 77 (262)
++||+|+++++|++||++||++++|+.++++++++|+|...++.+++++||.||.+|++||||||||||||+|-+.
T Consensus 32 K~~s~~~k~k~lr~sw~kKm~lr~e~~~vK~~~~~i~ek~~~~rqeKkqRrvEn~kRRLeNERkaEvVQvI~npaK 107 (130)
T KOG4538|consen 32 KKHSEIKKVKTLRSSWDKKMELRAEKDMVKRVQDNIREKQVQERQEKKQRRVENEKRRLENERKAEVVQVITNPAK 107 (130)
T ss_pred HHHHHHHHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHcCHHH
Confidence 5799999999999999999999999999999999999999999999999999999999999999999999999765
No 3
>PF03879 Cgr1: Cgr1 family; InterPro: IPR005579 Cgr1 is involved in nucleolar integrity and is required for processing pre-rRNA for the 60S ribosome subunit. In Saccharomyces cerevisiae, this protein is conserved and contributes to compartmentalisation of nucleolar constituents []. Cgr1 is a small hydrophilic protein and members of this family are coiled-coil proteins []. Its primary role appears to be in ribosome biogenesis [, ]. Expression of CGR1 is also associated with a cessation of yeast cell growth, which is a prerequisite for germination in this organism [].
Probab=99.67 E-value=2.4e-16 Score=128.44 Aligned_cols=102 Identities=24% Similarity=0.347 Sum_probs=91.3
Q ss_pred cccccccccccccccchhcccccCCcccccccccCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1453 109 TLIGDLMQTGVWEPARRAFFDVRSDVGSFSTMVKTPGLRRPHSEKEKLRAEIKHNKEMTRSILDAQARAKEEHRQRRAEN 188 (262)
Q Consensus 109 al~gd~~srgvWk~q~~a~fdvrSdkkSfSsm~KtK~LktSw~~k~~~r~e~k~~k~~~~~i~~~~~~~~~~~k~~~~~~ 188 (262)
++.|.+.||.+|+++.+ -|+.+..+.++.+||+.+|+.+.+.+.+|+++++|.|+...+.+++.++
T Consensus 2 ~~~G~~~sGk~WK~~K~----------~f~~~~~~~~~~tSwekr~~~R~~~~~~K~~ekElKeEKe~er~~r~~~---- 67 (108)
T PF03879_consen 2 KPKGMRKSGKVWKTPKK----------AFRPKSKKKKKRTSWEKRMEKRLELKAIKEKEKELKEEKEAERQRRIQR---- 67 (108)
T ss_pred CCCCCCCCCCCCCCccc----------cccccccCccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 56799999999999877 5777788899999999999999999999999999999999998888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccceeecChHHHhhccHHHHhH
Q psy1453 189 IKRREENAKKAEIVQVRRAENIKRREENAKKAEIVQVIKNPAKLKRMKKKQLRL 242 (262)
Q Consensus 189 ~~~~~~~~~~~~~~~~~r~en~kRr~ENerKseiVQvI~n~aklKrm~KKqlr~ 242 (262)
..++..+++||++...+++ +-|+++|.||+++|+|.
T Consensus 68 -----------------~kerr~~keEkeR~E~~a~-km~~kKv~RmkrkekRn 103 (108)
T PF03879_consen 68 -----------------IKERRKRKEEKERYEKMAA-KMHAKKVERMKRKEKRN 103 (108)
T ss_pred -----------------HHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHh
Confidence 8899999999999755555 55999999999999985
No 4
>PF03879 Cgr1: Cgr1 family; InterPro: IPR005579 Cgr1 is involved in nucleolar integrity and is required for processing pre-rRNA for the 60S ribosome subunit. In Saccharomyces cerevisiae, this protein is conserved and contributes to compartmentalisation of nucleolar constituents []. Cgr1 is a small hydrophilic protein and members of this family are coiled-coil proteins []. Its primary role appears to be in ribosome biogenesis [, ]. Expression of CGR1 is also associated with a cessation of yeast cell growth, which is a prerequisite for germination in this organism [].
Probab=99.00 E-value=8.3e-10 Score=90.33 Aligned_cols=72 Identities=21% Similarity=0.293 Sum_probs=67.0
Q ss_pred ccccccccCCCCCCChHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHhhhhccceeeee
Q psy1453 2 ELFSTMVKTPGLRRPHSEKEKLRAEIKHNKEMTRSILDAQARAKEEHRQRRAENIKRREENAKKAEIVQVVS 73 (262)
Q Consensus 2 ~RfSsi~k~k~Lrtsw~kKm~~r~e~k~vKd~sr~lke~~~~ek~~kr~rR~en~KRr~ENeRKSEIVQvIt 73 (262)
..|+.+..+.++.+||+++|+.+.+.+.|++++++|+|+...+.+++.++..++..+++||+|...|++++.
T Consensus 18 ~~f~~~~~~~~~~tSwekr~~~R~~~~~~K~~ekElKeEKe~er~~r~~~~kerr~~keEkeR~E~~a~km~ 89 (108)
T PF03879_consen 18 KAFRPKSKKKKKRTSWEKRMEKRLELKAIKEKEKELKEEKEAERQRRIQRIKERRKRKEEKERYEKMAAKMH 89 (108)
T ss_pred ccccccccCccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 368998889999999999999999999999999999999999999999999999999999999877777653
No 5
>PTZ00121 MAEBL; Provisional
Probab=22.30 E-value=4.9e+02 Score=31.19 Aligned_cols=26 Identities=54% Similarity=0.583 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy1453 196 AKKAEIVQVRRAENIKRREENAKKAE 221 (262)
Q Consensus 196 ~~~~~~~~~~r~en~kRr~ENerKse 221 (262)
+++++-..-++.|..+..+|..++.+
T Consensus 1680 ~kk~~ee~~k~~e~~kk~~ee~k~~~ 1705 (2084)
T PTZ00121 1680 AKKAEEDEKKAAEALKKEAEEAKKAE 1705 (2084)
T ss_pred HhhhhHHHHHHHHHHHhHHHHHHHHH
Confidence 33333333444444555555555443
No 6
>PF13025 DUF3886: Protein of unknown function (DUF3886)
Probab=18.43 E-value=4.4e+02 Score=20.52 Aligned_cols=34 Identities=32% Similarity=0.435 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy1453 161 KHNKEMTRSILDAQARAKEEHRQRRAENIKRREE 194 (262)
Q Consensus 161 k~~k~~~~~i~~~~~~~~~~~k~~~~~~~~~~~~ 194 (262)
..++.+..++...-...+++.++++.+.++.|+.
T Consensus 20 ~kLka~k~eLk~~ee~r~e~e~~~~~~erk~rEK 53 (70)
T PF13025_consen 20 AKLKAKKQELKAEEEKRKEEERARRREERKEREK 53 (70)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456677777776666655555554444444433
No 7
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=18.28 E-value=9.6e+02 Score=27.06 Aligned_cols=10 Identities=10% Similarity=-0.393 Sum_probs=4.5
Q ss_pred ccchhhhhhh
Q psy1453 76 RLCSRDDCKE 85 (262)
Q Consensus 76 ~~eirD~~~d 85 (262)
..++.|+|..
T Consensus 268 S~eL~dLI~~ 277 (1021)
T PTZ00266 268 SKELNILIKN 277 (1021)
T ss_pred CHHHHHHHHH
Confidence 3444444433
No 8
>PF04822 Takusan: Takusan; InterPro: IPR006907 This family includes several uncharacterised muridae (mouse and rat) proteins.
Probab=17.54 E-value=24 Score=28.05 Aligned_cols=19 Identities=21% Similarity=0.134 Sum_probs=16.3
Q ss_pred eeeeeccccchhhhhhhhh
Q psy1453 69 VQVVSFKRLCSRDDCKEWA 87 (262)
Q Consensus 69 VQvIt~~~~eirD~~~dl~ 87 (262)
.|.||+.|||+||.|.++.
T Consensus 28 L~~it~ERnELr~~L~~~~ 46 (84)
T PF04822_consen 28 LQKITKERNELRDILALYT 46 (84)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 4789999999999998765
No 9
>KOG0163|consensus
Probab=16.01 E-value=6.5e+02 Score=28.35 Aligned_cols=57 Identities=19% Similarity=0.365 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy1453 152 EKEKLRAEIKHNKEMTRSILDAQARAKEEHRQRRAENIKRREENAKKAEIVQVRRAENIKRREENAKK 219 (262)
Q Consensus 152 ~k~~~r~e~k~~k~~~~~i~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~r~en~kRr~ENerK 219 (262)
++.+.-++++.....+..+..++++.+.+.+++|.+...+|-+ .+-..+|+.|.+..
T Consensus 915 k~~q~~~e~er~rk~qE~~E~ER~rrEaeek~rre~ee~k~~k-----------~e~e~kRK~eEeqr 971 (1259)
T KOG0163|consen 915 KEQQQIEELERLRKIQELAEAERKRREAEEKRRREEEEKKRAK-----------AEMETKRKAEEEQR 971 (1259)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHH
No 10
>KOG4364|consensus
Probab=15.44 E-value=9.1e+02 Score=26.56 Aligned_cols=78 Identities=22% Similarity=0.275 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccceeec
Q psy1453 151 SEKEKLRAEIKHNKEMTRSILDAQARAKEEHR---QRRAENIKRREENAKKAEIVQVRRAENIKRREENAKKAEIVQVIK 227 (262)
Q Consensus 151 ~~k~~~r~e~k~~k~~~~~i~~~~~~~~~~~k---~~~~~~~~~~~~~~~~~~~~~~~r~en~kRr~ENerKseiVQvI~ 227 (262)
.+|+..+.|...-+.-..+-...+.++++..+ ++..+.-++-.|..++++--.+...|..+++.+|+- +-.+|.|.
T Consensus 305 ~KKqqkekEkeEKrrKdE~Ek~kKqeek~KR~k~~Erkee~~rk~deerkK~e~ke~ea~E~rkkr~~aei-~Kffqk~~ 383 (811)
T KOG4364|consen 305 IKKQQKEKEKEEKRRKDEQEKLKKQEEKQKRAKIMERKEEKSRKSDEERKKLESKEVEAQELRKKRHEAEI-GKFFQKID 383 (811)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhHHHHHHHHHHHHHHHH-Hhhhcccc
Q ss_pred Ch
Q psy1453 228 NP 229 (262)
Q Consensus 228 n~ 229 (262)
|+
T Consensus 384 ~k 385 (811)
T KOG4364|consen 384 NK 385 (811)
T ss_pred cc
Done!