Query psy1453
Match_columns 262
No_of_seqs 132 out of 154
Neff 3.5
Searched_HMMs 29240
Date Fri Aug 16 22:13:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1453.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1453hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2nps_B Syntaxin 13, vesicle-as 16.6 42 0.0014 23.9 0.8 22 72-93 11-32 (71)
2 1jth_B Syntaxin 1A; coiled-coi 14.7 50 0.0017 23.8 0.8 22 72-93 15-36 (77)
3 1n7s_B Syntaxin 1A; neuronal s 14.4 52 0.0018 23.2 0.8 20 74-93 19-38 (68)
4 1gl2_B Syntaxin 7; membrane pr 13.9 54 0.0019 23.0 0.8 21 72-92 14-34 (65)
5 3b5n_B Protein SSO1; snare com 13.2 59 0.002 23.0 0.8 21 72-92 15-35 (69)
6 1sfc_B Protein (syntaxin 1A), 12.6 62 0.0021 23.7 0.8 22 72-93 26-47 (83)
7 3oqu_A Abscisic acid receptor 11.4 98 0.0033 26.7 1.8 38 65-103 53-91 (205)
8 2jg6_A DNA-3-methyladenine gly 8.4 94 0.0032 26.9 0.5 43 77-119 103-154 (186)
9 3oji_A Abscisic acid receptor 7.6 1.4E+02 0.0048 25.5 1.3 45 61-105 27-73 (189)
10 3rt2_A Abscisic acid receptor 7.3 1.8E+02 0.006 24.4 1.7 38 65-103 28-66 (183)
No 1
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=16.63 E-value=42 Score=23.92 Aligned_cols=22 Identities=14% Similarity=0.031 Sum_probs=15.7
Q ss_pred eeccccchhhhhhhhhhhccCc
Q psy1453 72 VSFKRLCSRDDCKEWAQLAWGP 93 (262)
Q Consensus 72 It~~~~eirD~~~dl~s~vw~q 93 (262)
|-..=.+|.++|.||+.||=.|
T Consensus 11 ie~~i~eL~~iF~dla~lV~eQ 32 (71)
T 2nps_B 11 LEADILDVNQIFKDLAMMIHDQ 32 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3334458899999999988543
No 2
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=14.71 E-value=50 Score=23.81 Aligned_cols=22 Identities=14% Similarity=-0.111 Sum_probs=16.2
Q ss_pred eeccccchhhhhhhhhhhccCc
Q psy1453 72 VSFKRLCSRDDCKEWAQLAWGP 93 (262)
Q Consensus 72 It~~~~eirD~~~dl~s~vw~q 93 (262)
|-..=.|+.++|.||+.||=.|
T Consensus 15 ie~~i~eL~~iF~dla~lV~eQ 36 (77)
T 1jth_B 15 LENSIRELHDMFMDMAMLVESQ 36 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3344468999999999998544
No 3
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=14.40 E-value=52 Score=23.22 Aligned_cols=20 Identities=15% Similarity=-0.155 Sum_probs=15.0
Q ss_pred ccccchhhhhhhhhhhccCc
Q psy1453 74 FKRLCSRDDCKEWAQLAWGP 93 (262)
Q Consensus 74 ~~~~eirD~~~dl~s~vw~q 93 (262)
..=.++.++|.||+.||=.|
T Consensus 19 ~~i~eL~~iF~dla~lV~eQ 38 (68)
T 1n7s_B 19 NSIRELHDMFMDMAMLVESQ 38 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34458899999999998543
No 4
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=13.91 E-value=54 Score=23.02 Aligned_cols=21 Identities=5% Similarity=-0.012 Sum_probs=15.4
Q ss_pred eeccccchhhhhhhhhhhccC
Q psy1453 72 VSFKRLCSRDDCKEWAQLAWG 92 (262)
Q Consensus 72 It~~~~eirD~~~dl~s~vw~ 92 (262)
|-..=.++.++|.||+.||=.
T Consensus 14 ie~~i~eL~~iF~dla~lV~e 34 (65)
T 1gl2_B 14 LEADIMDINEIFKDLGMMIHE 34 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334445889999999999843
No 5
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=13.16 E-value=59 Score=23.05 Aligned_cols=21 Identities=5% Similarity=-0.118 Sum_probs=15.5
Q ss_pred eeccccchhhhhhhhhhhccC
Q psy1453 72 VSFKRLCSRDDCKEWAQLAWG 92 (262)
Q Consensus 72 It~~~~eirD~~~dl~s~vw~ 92 (262)
|-..=.++.++|.||+.||=.
T Consensus 15 ie~~i~eL~~iF~dla~lV~e 35 (69)
T 3b5n_B 15 LEKSMAELTQLFNDMEELVIE 35 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334445889999999998843
No 6
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Probab=12.62 E-value=62 Score=23.74 Aligned_cols=22 Identities=14% Similarity=-0.111 Sum_probs=16.2
Q ss_pred eeccccchhhhhhhhhhhccCc
Q psy1453 72 VSFKRLCSRDDCKEWAQLAWGP 93 (262)
Q Consensus 72 It~~~~eirD~~~dl~s~vw~q 93 (262)
|-..=.|+.++|.||+.||=.|
T Consensus 26 ie~~i~eL~~iF~dla~lV~eQ 47 (83)
T 1sfc_B 26 LENSIRELHDMFMDMAMLVESQ 47 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344458999999999998543
No 7
>3oqu_A Abscisic acid receptor PYL9; RCAR1, hormone receptor; HET: A8S; 2.68A {Arabidopsis thaliana}
Probab=11.35 E-value=98 Score=26.68 Aligned_cols=38 Identities=8% Similarity=0.047 Sum_probs=30.9
Q ss_pred hccceeeeeccccchhhhhhhhhhh-ccCccccccccccC
Q psy1453 65 KAEIVQVVSFKRLCSRDDCKEWAQL-AWGPATIEPVMQEA 103 (262)
Q Consensus 65 KSEIVQvIt~~~~eirD~~~dl~s~-vw~qv~kEPvv~e~ 103 (262)
-+.|+|.|.---..|-+++.|+..+ .|.+.++.-.| ++
T Consensus 53 ~~~V~~~I~ApadkVW~lV~Df~~l~kW~P~V~s~ev-eG 91 (205)
T 3oqu_A 53 TSALVKHIKAPLHLVWSLVRRFDQPQKYKPFVSRCTV-IG 91 (205)
T ss_dssp EEEEEEEESSCHHHHHHHHTCTTCGGGTCTTEEEEEC-CS
T ss_pred EEEEeeEEcCCHHHHHHHHhCcCChhHcCccceEEEe-eC
Confidence 3678899999999999999999888 79988776544 44
No 8
>2jg6_A DNA-3-methyladenine glycosidase; 3-methyladenine-DNA-glycosylase-I, hydrolase; 1.70A {Staphylococcus aureus} PDB: 4aia_A* 4ai5_A* 4ai4_A
Probab=8.37 E-value=94 Score=26.86 Aligned_cols=43 Identities=19% Similarity=0.233 Sum_probs=29.1
Q ss_pred cchhhhhhhhhhhccCcccccccccc------CCCCC---cccccccccccc
Q psy1453 77 LCSRDDCKEWAQLAWGPATIEPVMQE------ASPNS---PTLIGDLMQTGV 119 (262)
Q Consensus 77 ~eirD~~~dl~s~vw~qv~kEPvv~e------~s~~~---~al~gd~~srgv 119 (262)
.+|++-+++|+.+.||-|=-.|++.. .++.+ .++--|+..+|.
T Consensus 103 l~i~~e~gsf~~ylW~fv~~~p~~~~~~~~~~vp~~t~~S~~lsKdLKkrGF 154 (186)
T 2jg6_A 103 LKIEQAYGSFSKFLWSYVNGKPKDLQYEHASDRITVDDTATQLSKDLKQYGF 154 (186)
T ss_dssp HHHHHHHSCHHHHHHGGGTTSCEECCCCSGGGCCSCCHHHHHHHHHHHTTTC
T ss_pred HHHHHhcCCHHHHHHhcCCCCCccCCccchhhcCCCCHHHHHHHHHHHHCCC
Confidence 35677789999999999988888743 22222 245555666553
No 9
>3oji_A Abscisic acid receptor PYL3; crystal, PP2C, pyrabactin, HOR receptor; HET: PYV; 1.84A {Arabidopsis thaliana} PDB: 4ds8_A* 3klx_A* 4dsb_A* 4dsc_A*
Probab=7.57 E-value=1.4e+02 Score=25.51 Aligned_cols=45 Identities=9% Similarity=-0.006 Sum_probs=36.5
Q ss_pred Hhhhhccceeeeeccccchhhhhhhhhhh-ccCcccccccccc-CCC
Q psy1453 61 ENAKKAEIVQVVSFKRLCSRDDCKEWAQL-AWGPATIEPVMQE-ASP 105 (262)
Q Consensus 61 ENeRKSEIVQvIt~~~~eirD~~~dl~s~-vw~qv~kEPvv~e-~s~ 105 (262)
.|+==|.++|.|.---..|-.++.|+..+ .|.+.++.-.+.+ +..
T Consensus 27 ~~~c~s~~~~~I~Ap~d~VWalVrdF~~p~~w~p~V~s~~~~e~Gdg 73 (189)
T 3oji_A 27 PNTCTSLIAHRVDAPAHAIWRFVRDFANPNKYKHFIKSCTIRVNGNG 73 (189)
T ss_dssp -CEEEEEEEEEESSCHHHHHHHHSCTTCGGGTCTTEEEEEECCC---
T ss_pred CCccceeEEEEEcCCHHHHHHHHhCCCChhhCccccceEEEEecCCC
Confidence 46666889999999999999999999999 8999999988876 643
No 10
>3rt2_A Abscisic acid receptor PYL10; ABA-independent PP2C inhibitor, PP2CS, hydrolase inhibitor; 1.50A {Arabidopsis thaliana} PDB: 3r6p_A* 3qtj_A* 3uqh_A 3rt0_C
Probab=7.26 E-value=1.8e+02 Score=24.36 Aligned_cols=38 Identities=5% Similarity=0.059 Sum_probs=31.3
Q ss_pred hccceeeeeccccchhhhhhhhhhh-ccCccccccccccC
Q psy1453 65 KAEIVQVVSFKRLCSRDDCKEWAQL-AWGPATIEPVMQEA 103 (262)
Q Consensus 65 KSEIVQvIt~~~~eirD~~~dl~s~-vw~qv~kEPvv~e~ 103 (262)
-|.|+|.|.---..|-+++.|+.++ .|.+.+..- +-++
T Consensus 28 ~~~v~~~I~Apa~~VW~~v~df~~l~~w~P~V~s~-~~eG 66 (183)
T 3rt2_A 28 SSTLVKHIKAPLHLVWSIVRRFDEPQKYKPFISRC-VVQG 66 (183)
T ss_dssp EEEEEEEESSCHHHHHHHHTCTTCGGGTCTTEEEE-EESS
T ss_pred EEEEEEEEeCCHHHHHHHHhCcCchhhcCccceEE-EeeC
Confidence 4678999999999999999999888 799887766 3455
Done!