Query psy1453
Match_columns 262
No_of_seqs 132 out of 154
Neff 3.5
Searched_HMMs 13730
Date Fri Aug 16 22:13:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1453.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/1453hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1fioa_ a.47.2.1 (A:) Sso1 {Ba 12.9 24 0.0017 25.7 0.5 21 72-92 174-194 (196)
2 d1am9a_ a.38.1.1 (A:) SREBP-1a 7.6 58 0.0042 21.8 0.8 18 75-92 17-34 (80)
3 d1nkua_ a.96.1.4 (A:) 3-Methyl 6.7 30 0.0022 27.7 -1.3 25 78-102 104-128 (187)
4 d1uklc_ a.38.1.1 (C:) SREBP-2 6.6 98 0.0071 19.7 1.5 18 76-93 1-18 (61)
5 d2pifa1 d.382.1.1 (A:7-262) Un 5.4 1.3E+02 0.0097 25.1 2.1 28 110-138 60-87 (256)
6 d1nkpb_ a.38.1.1 (B:) Max prot 5.3 61 0.0044 21.7 -0.2 18 75-92 13-30 (83)
7 d3ulla_ b.40.4.3 (A:) ssDNA-bi 5.0 70 0.0051 22.2 -0.0 30 92-121 12-41 (115)
8 d1ue1a_ b.40.4.3 (A:) ssDNA-bi 4.5 92 0.0067 21.7 0.4 40 92-131 9-56 (118)
9 d1an4a_ a.38.1.1 (A:) Usf B/HL 4.3 1.1E+02 0.008 19.6 0.6 18 75-92 16-33 (65)
10 d1nlwa_ a.38.1.1 (A:) Mad prot 4.3 85 0.0062 20.7 -0.0 17 75-91 12-28 (79)
No 1
>d1fioa_ a.47.2.1 (A:) Sso1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=12.94 E-value=24 Score=25.71 Aligned_cols=21 Identities=5% Similarity=-0.118 Sum_probs=14.7
Q ss_pred eeccccchhhhhhhhhhhccC
Q psy1453 72 VSFKRLCSRDDCKEWAQLAWG 92 (262)
Q Consensus 72 It~~~~eirD~~~dl~s~vw~ 92 (262)
|-..=.||.++|.||+.||=-
T Consensus 174 Ie~sI~eL~~iF~dLa~LV~e 194 (196)
T d1fioa_ 174 LEKSMAELTQLFNDMEELVIE 194 (196)
T ss_dssp HHHHHHHHHHHHHHHHSCCCC
T ss_pred HHHhHHHHHHHHHHHHHHHHc
Confidence 334446788889999988743
No 2
>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.57 E-value=58 Score=21.80 Aligned_cols=18 Identities=28% Similarity=0.235 Sum_probs=15.0
Q ss_pred cccchhhhhhhhhhhccC
Q psy1453 75 KRLCSRDDCKEWAQLAWG 92 (262)
Q Consensus 75 ~~~eirD~~~dl~s~vw~ 92 (262)
+|..|.|.|.+|.+|+++
T Consensus 17 RR~~in~~~~~L~~llP~ 34 (80)
T d1am9a_ 17 YRSSINDKIIELKDLVVG 34 (80)
T ss_dssp HHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhcCCC
Confidence 466789999999999964
No 3
>d1nkua_ a.96.1.4 (A:) 3-Methyladenine DNA glycosylase I (Tag) {Escherichia coli [TaxId: 562]}
Probab=6.67 E-value=30 Score=27.69 Aligned_cols=25 Identities=16% Similarity=0.407 Sum_probs=21.4
Q ss_pred chhhhhhhhhhhccCcccccccccc
Q psy1453 78 CSRDDCKEWAQLAWGPATIEPVMQE 102 (262)
Q Consensus 78 eirD~~~dl~s~vw~qv~kEPvv~e 102 (262)
+|+.-+++|+.+.|+-|--.|++..
T Consensus 104 ~i~~e~gsf~~~lw~f~~~~p~~~~ 128 (187)
T d1nkua_ 104 QMEQNGEPFADFVWSFVNHQPQMTQ 128 (187)
T ss_dssp HHHHTTCCHHHHHHHHTTTCCEECC
T ss_pred HHHHhcCCHHHHHHhcCCCCCcCCC
Confidence 4666688999999999999999865
No 4
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.55 E-value=98 Score=19.70 Aligned_cols=18 Identities=28% Similarity=0.305 Sum_probs=14.5
Q ss_pred ccchhhhhhhhhhhccCc
Q psy1453 76 RLCSRDDCKEWAQLAWGP 93 (262)
Q Consensus 76 ~~eirD~~~dl~s~vw~q 93 (262)
|+.|-|.|..|.++++|.
T Consensus 1 R~~in~~f~~L~~lvP~~ 18 (61)
T d1uklc_ 1 RSSINDKIIELKDLVMGT 18 (61)
T ss_dssp CCCHHHHHHHHHHHHSCS
T ss_pred CcHHHHHHHHHHhhCCCC
Confidence 467888999999998864
No 5
>d2pifa1 d.382.1.1 (A:7-262) Uncharacterized protein PSTPO5379 {Pseudomonas syringae pv. tomato [TaxId: 323]}
Probab=5.40 E-value=1.3e+02 Score=25.13 Aligned_cols=28 Identities=11% Similarity=0.029 Sum_probs=18.3
Q ss_pred ccccccccccccccchhcccccCCccccc
Q psy1453 110 LIGDLMQTGVWEPARRAFFDVRSDVGSFS 138 (262)
Q Consensus 110 l~gd~~srgvWk~q~~a~fdvrSdkkSfS 138 (262)
|+|....|. |.+....=+|+|||.++|.
T Consensus 60 Ll~vs~~G~-~~~~la~~~DIRTD~P~Y~ 87 (256)
T d2pifa1 60 ILDVSDAGS-PTTLLAEGSDLRTDIPMYR 87 (256)
T ss_dssp EEEECCTTC-CCBTTBTTCCTTTSSSCEE
T ss_pred EeeecCCCC-cccccCCCCceecCCCceE
Confidence 444444444 4454555579999999997
No 6
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.30 E-value=61 Score=21.68 Aligned_cols=18 Identities=11% Similarity=0.025 Sum_probs=14.8
Q ss_pred cccchhhhhhhhhhhccC
Q psy1453 75 KRLCSRDDCKEWAQLAWG 92 (262)
Q Consensus 75 ~~~eirD~~~dl~s~vw~ 92 (262)
++..|.|.|.+|.+++++
T Consensus 13 RR~~in~~f~~L~~llP~ 30 (83)
T d1nkpb_ 13 RRDHIKDSFHSLRDSVPS 30 (83)
T ss_dssp HHHHHHHHHHHHHTTSGG
T ss_pred HHHHHHHHHHHHHHHhCC
Confidence 466789999999999853
No 7
>d3ulla_ b.40.4.3 (A:) ssDNA-binding protein {Human (Homo sapiens), mitochondria [TaxId: 9606]}
Probab=4.99 E-value=70 Score=22.25 Aligned_cols=30 Identities=23% Similarity=0.531 Sum_probs=18.5
Q ss_pred CccccccccccCCCCCcccccccccccccc
Q psy1453 92 GPATIEPVMQEASPNSPTLIGDLMQTGVWE 121 (262)
Q Consensus 92 ~qv~kEPvv~e~s~~~~al~gd~~srgvWk 121 (262)
|.+..+|.++..+++.+-..-.+++.+.|+
T Consensus 12 G~l~~dpe~r~t~~G~~v~~f~vAv~~~~~ 41 (115)
T d3ulla_ 12 GRVGQDPVLRQVEGKNPVTIFSLATNEMWR 41 (115)
T ss_dssp EEECSCCEEECCTTSCCEEEEEEEEEEEEC
T ss_pred EECCCCCEEEEeCCCCEEEEEEEEcccccc
Confidence 678899999986655543334444444443
No 8
>d1ue1a_ b.40.4.3 (A:) ssDNA-binding protein {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=4.52 E-value=92 Score=21.71 Aligned_cols=40 Identities=20% Similarity=0.358 Sum_probs=22.9
Q ss_pred CccccccccccCCCCCcccccccc--------ccccccccchhccccc
Q psy1453 92 GPATIEPVMQEASPNSPTLIGDLM--------QTGVWEPARRAFFDVR 131 (262)
Q Consensus 92 ~qv~kEPvv~e~s~~~~al~gd~~--------srgvWk~q~~a~fdvr 131 (262)
|.+..+|.++..+++.+-+--.++ .+|-|....+.+|+|-
T Consensus 9 G~l~~dpe~r~~~~G~~v~~f~lA~~~~~~~~~~~~~~~~~t~~~~v~ 56 (118)
T d1ue1a_ 9 GNLTADPELRFTPSGAAVANFTVASTPRIYDRQTGEWKDGEALFLRCN 56 (118)
T ss_dssp EEESSCCEEEECTTSCEEEEEEEEECCCCCC-----CCCCCCEEEEEE
T ss_pred EEcCcCCEEEECCCCCEEEEEEEEecccccccCCCcccccceeeEEEE
Confidence 667889999986555543223332 2355666666677775
No 9
>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.34 E-value=1.1e+02 Score=19.58 Aligned_cols=18 Identities=6% Similarity=-0.108 Sum_probs=15.1
Q ss_pred cccchhhhhhhhhhhccC
Q psy1453 75 KRLCSRDDCKEWAQLAWG 92 (262)
Q Consensus 75 ~~~eirD~~~dl~s~vw~ 92 (262)
++..|.+.|..|.+|+++
T Consensus 16 RR~~in~~f~~L~~lvP~ 33 (65)
T d1an4a_ 16 RRDKINNWIVQLSKIIPD 33 (65)
T ss_dssp HHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHccc
Confidence 467789999999999964
No 10
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.26 E-value=85 Score=20.69 Aligned_cols=17 Identities=18% Similarity=0.040 Sum_probs=14.5
Q ss_pred cccchhhhhhhhhhhcc
Q psy1453 75 KRLCSRDDCKEWAQLAW 91 (262)
Q Consensus 75 ~~~eirD~~~dl~s~vw 91 (262)
++..|.+.|..|.++++
T Consensus 12 RR~~in~~f~~L~~llP 28 (79)
T d1nlwa_ 12 RRAHLRLSLEKLKGLVP 28 (79)
T ss_dssp HHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHHhCc
Confidence 56778999999999985
Done!