RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1453
(262 letters)
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional.
Length = 2084
Score = 41.7 bits (97), Expect = 3e-04
Identities = 56/254 (22%), Positives = 101/254 (39%), Gaps = 12/254 (4%)
Query: 9 KTPGLRRPHSEKEKLRAEIKHNKEMTRSILDAQARAKEEHRQRRAENIKRREENAKKAEI 68
K ++ K+K K + AK+ ++AE K+ +E K E+
Sbjct: 1498 KADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEEL 1557
Query: 69 VQVVSFKRLCSRDDCKEWAQLAWGPATIEPVMQEASPNSPTLIGDLMQTGVWEPARRAFF 128
+ K+ +E +A A +EA + + + E A++A
Sbjct: 1558 KKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEE 1617
Query: 129 DVR--SDVGSFSTMVKTPGLRRPHSEKEKLRAEIKHNKEMTRSILDAQARAKEEHRQRRA 186
++ K + +EK +AE E I A+ K E +++A
Sbjct: 1618 AKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKA 1677
Query: 187 ENIKRREENAKKAEIVQVRRAENIKRREENAKKAEIVQVIKNPAKLKRMKKKQLRLIEKR 246
E K+ EE+ KKA E +K+ E AKKAE ++ K A+ K+ K ++L+ E+
Sbjct: 1678 EEAKKAEEDEKKAA-------EALKKEAEEAKKAE--ELKKKEAEEKK-KAEELKKAEEE 1727
Query: 247 DTLPIVEKRKAAAQ 260
+ + E +K A +
Sbjct: 1728 NKIKAEEAKKEAEE 1741
Score = 38.2 bits (88), Expect = 0.004
Identities = 50/243 (20%), Positives = 101/243 (41%), Gaps = 7/243 (2%)
Query: 18 SEKEKLRAEIKHNKEMTRSILDAQARAKEEHRQRRAENIKRREENAKKAEIVQVVSFKRL 77
+E+E+ EI+ +E + + A + R+A+ +K+ EE K E + K+
Sbjct: 1245 AEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKA 1304
Query: 78 CSRDDCKEWAQLAWGPATIEPVMQEASPNSPTLIGDLMQTGVWEPARRAFFDVRSDVGSF 137
D+ K+ A+ A + +EA + + A +A + +D
Sbjct: 1305 ---DEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEA 1361
Query: 138 STMVKTPGLRRPHSEKEKLRAEIKHNKEMTRSILDAQARAKEEHRQRRAENIKRREENAK 197
+ ++ K+K A K +E ++ +A+ K E +++A+ +K+ K
Sbjct: 1362 AEEKAEAAEKKKEEAKKKADAAKKKAEEKKKA---DEAKKKAEEDKKKADELKKAAAAKK 1418
Query: 198 KAEIVQVRRAENIKRREENAKKAEIVQVIKNPAKLKRMKKKQLRLIEKRDTLPIVEKRKA 257
KA+ + ++AE K+ +E KKAE + K KK +K + ++ K
Sbjct: 1419 KADEAK-KKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKK 1477
Query: 258 AAQ 260
A+
Sbjct: 1478 KAE 1480
Score = 37.8 bits (87), Expect = 0.005
Identities = 30/113 (26%), Positives = 50/113 (44%), Gaps = 5/113 (4%)
Query: 148 RPHSEKEKLRAEIKHNKEMTRSILDAQARAKEEHRQRRAENIKRREENAKKAEIVQVRRA 207
+ E+ K++A + K +A+ EE ++ AE +K+ E AKKAE ++ + A
Sbjct: 1653 KKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEA 1712
Query: 208 ENIKRREENAKKAEIVQVIKNPAKLKRMKKKQLRLIEKRDTLPIVEKRKAAAQ 260
E K+ EE K E N K + KK+ +K + E+ K
Sbjct: 1713 EEKKKAEELKKAEEE-----NKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIA 1760
Score = 34.7 bits (79), Expect = 0.053
Identities = 44/201 (21%), Positives = 76/201 (37%), Gaps = 14/201 (6%)
Query: 41 QARAKEEHRQRRAENIKRREENAKKAEIVQVVSFKRLCSRDDCKEWAQLAWGPATIEPVM 100
+A+ K E +++A+ K+ E KKA+ + + E A+ A E
Sbjct: 1487 EAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKK 1546
Query: 101 QEASPNSPTLIGDLMQTGVWEPARRAFFDVRSDVGSFSTMVKTPGLRRPHSEK--EKLRA 158
+ + + E A++A D K LR+ K E+ R
Sbjct: 1547 KADELKKAEELKKAEEKKKAEEAKKAEED------------KNMALRKAEEAKKAEEARI 1594
Query: 159 EIKHNKEMTRSILDAQARAKEEHRQRRAENIKRREENAKKAEIVQVRRAENIKRREENAK 218
E + A+ K E + +AE +K+ EE KK E ++ + AE K+ EE K
Sbjct: 1595 EEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKK 1654
Query: 219 KAEIVQVIKNPAKLKRMKKKQ 239
E ++ K + K+
Sbjct: 1655 AEEENKIKAAEEAKKAEEDKK 1675
Score = 32.4 bits (73), Expect = 0.30
Identities = 27/121 (22%), Positives = 54/121 (44%), Gaps = 3/121 (2%)
Query: 142 KTPGLRRPHSEKEKLRAEIKHNKEMTRSILDAQARAKEEHRQRRAENIKRREENAKKAEI 201
K + +E AE K +A+ K + +++AE K+ +E KKAE
Sbjct: 1343 KAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEE 1402
Query: 202 VQVRRAENIKRREENAKKAEIVQVIKNPAKLKRMKKKQLRLIEKRDTLPIVEKRKAAAQA 261
+ ++A+ +K+ KKA+ + K + K+ + + + E + +K + A +A
Sbjct: 1403 DK-KKADELKKAAAAKKKAD--EAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKA 1459
Query: 262 E 262
E
Sbjct: 1460 E 1460
Score = 32.0 bits (72), Expect = 0.41
Identities = 34/117 (29%), Positives = 56/117 (47%), Gaps = 3/117 (2%)
Query: 141 VKTPGLRRPHSEKEKLRAEIKHNKEMTRSILDAQARAKEEHRQRRAENIKRRE-ENAKKA 199
+K + E +K E K +E + A+A KE ++AE +K++E E KKA
Sbjct: 1661 IKAAEEAKKAEEDKKKAEEAKKAEEDEKK--AAEALKKEAEEAKKAEELKKKEAEEKKKA 1718
Query: 200 EIVQVRRAENIKRREENAKKAEIVQVIKNPAKLKRMKKKQLRLIEKRDTLPIVEKRK 256
E ++ EN + EE K+AE + AK +KK++ ++K + E RK
Sbjct: 1719 EELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRK 1775
Score = 31.3 bits (70), Expect = 0.59
Identities = 29/107 (27%), Positives = 53/107 (49%), Gaps = 4/107 (3%)
Query: 151 SEKEKLRAEIKHNKEMTRSILDAQARAKEEHRQRRAENIKRREENAKKAEIVQVRRAENI 210
+E+ K E K E + +A+ +A+E ++A+ K++ E AKKA+ + ++AE
Sbjct: 1440 AEEAKKADEAKKKAEEAKKAEEAKKKAEE---AKKADEAKKKAEEAKKADEAK-KKAEEA 1495
Query: 211 KRREENAKKAEIVQVIKNPAKLKRMKKKQLRLIEKRDTLPIVEKRKA 257
K++ + AKKA + + AK KK + + E +KA
Sbjct: 1496 KKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKA 1542
Score = 30.9 bits (69), Expect = 0.77
Identities = 33/118 (27%), Positives = 58/118 (49%), Gaps = 9/118 (7%)
Query: 151 SEKEKLRAEIKHNKEMTRSILDAQARAKEEHRQRRAENIKRREENAKKAEIV-----QVR 205
+ +K E K E + +A+ +A+E ++A+ K++ E AKKAE + +
Sbjct: 1414 AAAKKKADEAKKKAEEKKKADEAKKKAEE---AKKADEAKKKAEEAKKAEEAKKKAEEAK 1470
Query: 206 RAENIKRREENAKKAEIVQVIKNPAKLKRMK-KKQLRLIEKRDTLPIVEKRKAAAQAE 262
+A+ K++ E AKKA+ + AK K + KK +K D E+ K A +A+
Sbjct: 1471 KADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAK 1528
Score = 30.5 bits (68), Expect = 1.0
Identities = 58/255 (22%), Positives = 101/255 (39%), Gaps = 17/255 (6%)
Query: 19 EKEKLRAEIKHNKEMTRSILDAQ----ARAKEEHRQR---RAENIKRREENAKKAEIVQV 71
E+ + E K E R +A+ AR EE R+ + I R+ E+A+KAE +
Sbjct: 1112 EEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEIARKAEDARKAEEARK 1171
Query: 72 VSFKRLCSRDDCKEWAQLAWGPATIEPVMQEASPNSPTLIGDLMQTGVWEPARRAFFDVR 131
+ E A+ A E + + + E AR+A +
Sbjct: 1172 AEDAKKA------EAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKK 1225
Query: 132 SDVGSFSTMVKTPGLRRPHSEKEKLRAEIKHNKEMTRSILDAQARAKEEHRQRRAENIKR 191
++ + K +E+E+ EI+ +E + + A + R+A+ +K+
Sbjct: 1226 AEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKK 1285
Query: 192 REENAKKAEIV---QVRRAENIKRREENAKKAEIVQVIKNPAKLK-RMKKKQLRLIEKRD 247
EE K E + ++A+ K++ E AKKA+ + AK K KK+ +K
Sbjct: 1286 AEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAA 1345
Query: 248 TLPIVEKRKAAAQAE 262
E AA +AE
Sbjct: 1346 EAAKAEAEAAADEAE 1360
Score = 30.5 bits (68), Expect = 1.2
Identities = 28/122 (22%), Positives = 56/122 (45%), Gaps = 5/122 (4%)
Query: 142 KTPGLRRPHSEKEKLRAEIKHNKEMTRSILDAQARAKEEHRQRRAENIKRREENAKKAEI 201
K ++ E +K K E +A E +++ E K+ + KKAE
Sbjct: 1330 KADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAE- 1388
Query: 202 VQVRRAENIKRR-EENAKKAEIVQVIKNPAKLKRMKKKQLRLIEKRDTLPIVEKRKAAAQ 260
+ ++A+ K++ EE+ KKA+ ++ K A K+ + + + EK+ +K + A +
Sbjct: 1389 -EKKKADEAKKKAEEDKKKAD--ELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKK 1445
Query: 261 AE 262
A+
Sbjct: 1446 AD 1447
Score = 29.7 bits (66), Expect = 2.0
Identities = 21/90 (23%), Positives = 40/90 (44%), Gaps = 4/90 (4%)
Query: 177 AKEEHRQRRAENIKRREENAKKAEIVQVRRAENIKRREENAKKAE----IVQVIKNPAKL 232
AK+ +++A+ K++ E AKKA+ + + E K+ + KKAE + K A+
Sbjct: 1295 AKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEA 1354
Query: 233 KRMKKKQLRLIEKRDTLPIVEKRKAAAQAE 262
+ + + E +K A A+
Sbjct: 1355 AADEAEAAEEKAEAAEKKKEEAKKKADAAK 1384
Score = 29.7 bits (66), Expect = 2.1
Identities = 35/178 (19%), Positives = 69/178 (38%)
Query: 44 AKEEHRQRRAENIKRREENAKKAEIVQVVSFKRLCSRDDCKEWAQLAWGPATIEPVMQEA 103
A++ ++AE +K+ EE K AE + +R E A++A + E
Sbjct: 1217 ARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEE 1276
Query: 104 SPNSPTLIGDLMQTGVWEPARRAFFDVRSDVGSFSTMVKTPGLRRPHSEKEKLRAEIKHN 163
+ + L + E + + + K + +E+ K +A+
Sbjct: 1277 ARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKK 1336
Query: 164 KEMTRSILDAQARAKEEHRQRRAENIKRREENAKKAEIVQVRRAENIKRREENAKKAE 221
K A+A+ E AE + + E A+K + ++A+ K++ E KKA+
Sbjct: 1337 KAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKAD 1394
Score = 29.3 bits (65), Expect = 2.7
Identities = 25/101 (24%), Positives = 45/101 (44%), Gaps = 5/101 (4%)
Query: 148 RPHSEKEKLRAEIKHNKEMTRSILDAQARAKEEHRQRRAENIKRREENAKKAEIVQVRRA 207
+ +EK +AE E I +A+ + E +++AE K+ EE KK + +
Sbjct: 1708 KKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKK---IAHLKK 1764
Query: 208 ENIKRREENAKKAEIVQVIKNPAKLKRMKKKQLRLIEKRDT 248
E K+ EE K+ E VI+ + K++ + +D
Sbjct: 1765 EEEKKAEEIRKEKE--AVIEEELDEEDEKRRMEVDKKIKDI 1803
Score = 29.0 bits (64), Expect = 3.0
Identities = 54/250 (21%), Positives = 111/250 (44%), Gaps = 10/250 (4%)
Query: 18 SEKEKLRAEIKHNKEMTRSILDAQARAKEEHRQRRAENIKRREENAKKAEIVQVVSFKRL 77
+E++K E K E + +A+ +A+E ++AE K++ E AKKA+ + + +
Sbjct: 1427 AEEKKKADEAKKKAEEAKKADEAKKKAEE---AKKAEEAKKKAEEAKKADEAKKKAEEAK 1483
Query: 78 CSRDDCKEWAQLAWGPATIEPVMQEASPNSPTLIGDLMQTGVWEPARRAFFDVRSDVGSF 137
D+ K+ A+ A A EA + + + A++A ++D
Sbjct: 1484 -KADEAKKKAEEAKKKADEAKKAAEAKKKADEA-KKAEEAKKADEAKKAEEAKKADEAKK 1541
Query: 138 STMVKTPGLRRPHSE----KEKLRAEIKHNKEMTRSILDAQARAKEEHRQRRAENIKRRE 193
+ K + E +EK +AE E +++ +A ++ + R E + +
Sbjct: 1542 AEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLY 1601
Query: 194 ENAKKAEIVQVRRAENIKRREENAKKAEIV-QVIKNPAKLKRMKKKQLRLIEKRDTLPIV 252
E KK + + ++AE K + E KKAE + ++ K + +KK+ ++K + +
Sbjct: 1602 EEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKI 1661
Query: 253 EKRKAAAQAE 262
+ + A +AE
Sbjct: 1662 KAAEEAKKAE 1671
Score = 28.2 bits (62), Expect = 5.7
Identities = 25/104 (24%), Positives = 49/104 (47%), Gaps = 7/104 (6%)
Query: 151 SEKEKLRAEIKHNKEMTRSILDAQARAKEEHRQRRAENIKRREE-------NAKKAEIVQ 203
+E+++ +A KE + + + KE +++AE +K+ EE AKK
Sbjct: 1683 AEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEED 1742
Query: 204 VRRAENIKRREENAKKAEIVQVIKNPAKLKRMKKKQLRLIEKRD 247
++AE K+ EE KK ++ + + K+K+ + E+ D
Sbjct: 1743 KKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELD 1786
>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated
ATPase domains [General function prediction only].
Length = 530
Score = 31.1 bits (71), Expect = 0.63
Identities = 13/59 (22%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Query: 18 SEKEKLRAEIKHNKEMT-RSILDAQARAKEEHRQRRAENIKRREENAKKAEIVQVVSFK 75
+ EK + E+ +E R A K + R +R E ++ R + E + ++F+
Sbjct: 251 AAYEKQQKELAKEQEWIRRGKAAASKAKKAKSRIKRLEKLEARLAEERPVEEGKPLAFR 309
Score = 29.1 bits (66), Expect = 2.4
Identities = 12/55 (21%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
Query: 151 SEKEKLRAEIKHNKEMT-RSILDAQARAKEEHRQRRAENIKRREENAKKAEIVQV 204
+ EK + E+ +E R A K + R +R E ++ R + E +
Sbjct: 251 AAYEKQQKELAKEQEWIRRGKAAASKAKKAKSRIKRLEKLEARLAEERPVEEGKP 305
>gnl|CDD|178945 PRK00247, PRK00247, putative inner membrane protein translocase
component YidC; Validated.
Length = 429
Score = 30.6 bits (69), Expect = 0.77
Identities = 22/118 (18%), Positives = 39/118 (33%), Gaps = 5/118 (4%)
Query: 148 RPHSEKEKLRAEIKHNKEMT---RSILDAQARAKEEHRQRRAENIKRREENAKKAEIVQV 204
+ +K L ++ M + A E + R AE K + KK +
Sbjct: 297 KQKEKKAFLWTLRRNRLRMIITPWRAPELHAENAEIKKTRTAE--KNEAKARKKEIAQKR 354
Query: 205 RRAENIKRREENAKKAEIVQVIKNPAKLKRMKKKQLRLIEKRDTLPIVEKRKAAAQAE 262
R AE RE ++A + + + KKK L + P + + +
Sbjct: 355 RAAEREINREARQERAAAMARARARRAAVKAKKKGLIDASPNEDTPSENEESKGSPPQ 412
>gnl|CDD|235334 PRK05035, PRK05035, electron transport complex protein RnfC;
Provisional.
Length = 695
Score = 30.7 bits (70), Expect = 0.95
Identities = 27/128 (21%), Positives = 45/128 (35%), Gaps = 24/128 (18%)
Query: 152 EKEKLRAEIKHNK-------EMTRSILDAQARAKEEHRQRRAENIKRREENAKKAEIVQV 204
E+EK E +H K + ++ A AR K + + + + ++
Sbjct: 463 EREKAAREARHKKAAEARAAKDKDAVAAALARVKAKKAAATQPIVIKAGARPDNSAVIAA 522
Query: 205 RRAENIKRREENA----------KKAEIVQVIKNPAKLKRMK-KKQLRLIEKRDTLPIVE 253
R A + R A KKA + A + R K KK + + V+
Sbjct: 523 REARKAQARARQAEKQAAAAADPKKAAVA------AAIARAKAKKAAQQAANAEAEEEVD 576
Query: 254 KRKAAAQA 261
+KAA A
Sbjct: 577 PKKAAVAA 584
>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional.
Length = 520
Score = 30.1 bits (69), Expect = 1.1
Identities = 21/85 (24%), Positives = 42/85 (49%), Gaps = 6/85 (7%)
Query: 168 RSILDAQARAKEEHRQRRAENIKRREENAKKAEIVQVRRAENIKRREE-----NAKKAEI 222
+ I +A+ + EE +R E K+ E KK +++ + E K R E ++ E+
Sbjct: 26 KKIAEAKIKEAEEEAKRILEEAKKEAEAIKKEALLEAKE-EIHKLRNEFEKELRERRNEL 84
Query: 223 VQVIKNPAKLKRMKKKQLRLIEKRD 247
++ K + + ++L L+EKR+
Sbjct: 85 QKLEKRLLQKEENLDRKLELLEKRE 109
Score = 29.4 bits (67), Expect = 2.0
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Query: 152 EKEKLRAEI-KHNKEMTRSILDAQAR--AKEEHRQRRAENIKRREENAKKAEIVQVRRAE 208
E KLR E K +E + + R KEE+ R+ E +++REE +K E ++ +
Sbjct: 65 EIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQ 124
Query: 209 NIKRREENAKKAEIVQV 225
++++EE ++ Q+
Sbjct: 125 ELEKKEEELEELIEEQL 141
Score = 29.0 bits (66), Expect = 2.9
Identities = 25/110 (22%), Positives = 52/110 (47%), Gaps = 17/110 (15%)
Query: 153 KEKLRAEIKHNKEMTRSILD-----AQARAKEEHRQRRAENIKRREE-----NAKKAEIV 202
K+ A+IK +E + IL+ A+A KE + + E K R E ++ E+
Sbjct: 26 KKIAEAKIKEAEEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQ 85
Query: 203 QV-----RRAENIKRREENAKK--AEIVQVIKNPAKLKRMKKKQLRLIEK 245
++ ++ EN+ R+ E +K E+ + K + ++ +K+ +E+
Sbjct: 86 KLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEE 135
>gnl|CDD|233148 TIGR00844, c_cpa1, na(+)/h(+) antiporter. The Monovalent
Cation:Proton Antiporter-1 (CPA1) Family (TC 2.A.36) The
CPA1 family is a large family of proteins derived from
Gram-positive and Gram-negative bacteria, blue green
bacteria, yeast, plants and animals. Transporters from
eukaryotes have been functionally characterized, and all
of these catalyze Na+:H+ exchange. Their primary
physiological functions may be in (1) cytoplasmic pH
regulation, extruding the H+ generated during
metabolism, and (2) salt tolerance (in plants), due to
Na+ uptake into vacuoles. This model is specific for the
fungal members of this family [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 810
Score = 29.9 bits (67), Expect = 1.7
Identities = 22/88 (25%), Positives = 33/88 (37%), Gaps = 7/88 (7%)
Query: 135 GSFSTMVKTPGLRRPHSEKEKLRA--EIKHNKEMTRSILDAQARAKEEHRQ----RRAEN 188
S M P L ++KLR E++ + EM + + KE H
Sbjct: 495 VRTSGMPARPALGMRQRWRQKLRNNKEMEDDIEMNDLGRERLQKEKEAHAATFDLSTTTT 554
Query: 189 IKRREENAKKAEIVQVRRAENIKRREEN 216
+ EN + + + R NIK R EN
Sbjct: 555 TQLGTENGRGGGLEE-RSKTNIKERSEN 581
>gnl|CDD|225177 COG2268, COG2268, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 548
Score = 29.4 bits (66), Expect = 1.9
Identities = 24/119 (20%), Positives = 50/119 (42%), Gaps = 1/119 (0%)
Query: 145 GLRRPHSEKEKLRAEIKHNKEMTRSILDAQARAKEEHRQRRAENIKRREENAKKAEIVQV 204
R +E+ ++ AE +E ++ + Q E R+ R I+R++E + +
Sbjct: 283 AETRREAEQAEILAEQAIQEEKAQAEQEVQHAKALEAREMRVGLIERQKETELEPQERSY 342
Query: 205 RRAENIKRREENAKK-AEIVQVIKNPAKLKRMKKKQLRLIEKRDTLPIVEKRKAAAQAE 262
++ +E AK A I + I A+ ++ E+ + +V +AA Q +
Sbjct: 343 FINAAQRQAQEEAKAAANIAEAIGAQAEAAVETARETEEAERAEQAALVAAAEAAEQEQ 401
>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor
protein; Reviewed.
Length = 782
Score = 29.4 bits (67), Expect = 1.9
Identities = 25/102 (24%), Positives = 45/102 (44%), Gaps = 16/102 (15%)
Query: 168 RSILDAQARAKEEHRQRRAENIKRREENAKKAEIVQVRRAENIKRREENAKKA------E 221
L+ +A E + AE +K EE +K E +Q + ++ E+ A++A E
Sbjct: 529 ERELEQKAEEAEALLKE-AEKLK--EELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKKE 585
Query: 222 IVQVIKNPAKLKRMKKKQLR---LIEKR----DTLPIVEKRK 256
++IK +L++ ++ LIE R EK+K
Sbjct: 586 ADEIIKELRQLQKGGYASVKAHELIEARKRLNKANEKKEKKK 627
>gnl|CDD|220173 pfam09311, Rab5-bind, Rabaptin-like protein. Members of this
family are predominantly found in Rabaptin and allow for
binding to the GTPase Rab5. This interaction is
necessary and sufficient for Rab5-dependent recruitment
of Rabaptin5 to early endosomal membranes.
Length = 180
Score = 28.9 bits (65), Expect = 2.1
Identities = 19/78 (24%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
Query: 151 SEKEKLRAEIKHNKEMTRSILDAQARAKEEHRQRRAENIKRREENAKKAEIVQVRRAENI 210
+ ++KLRA+++ ++ + + A ++E + E I+ EE + RR E I
Sbjct: 22 ASRQKLRAQLRRLQQENQWLRGELALTQQELQASEQEVIQLPEEVKHLQFLCLQRREELI 81
Query: 211 KRR-----EENAKKAEIV 223
+ R E K+EI
Sbjct: 82 ESRTASEHLEEELKSEID 99
>gnl|CDD|178635 PLN03086, PLN03086, PRLI-interacting factor K; Provisional.
Length = 567
Score = 29.5 bits (66), Expect = 2.3
Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 18/80 (22%)
Query: 13 LRRPHSEKEKLRAEIKHNKEMTRSILDAQARAKEE-----------HRQRRAENIKRREE 61
LRR +EKL E + K+ + L+ + +AKEE R RR + I+ + +
Sbjct: 5 LRRA---REKLEREQRERKQRAKLKLERERKAKEEAAKQREAIEAAQRSRRLDAIEAQIK 61
Query: 62 NAKKAEIVQV----VSFKRL 77
++ + + F R+
Sbjct: 62 ADQQMQESLQAGRGIVFSRI 81
Score = 29.1 bits (65), Expect = 2.4
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 7/69 (10%)
Query: 146 LRRPHSEKEKLRAEIKHNKEMTRSILDAQARAKEEHRQRR----AENIKRREENAKKAEI 201
LRR +EKL E + K+ + L+ + +AKEE ++R A RR + +
Sbjct: 5 LRRA---REKLEREQRERKQRAKLKLERERKAKEEAAKQREAIEAAQRSRRLDAIEAQIK 61
Query: 202 VQVRRAENI 210
+ E++
Sbjct: 62 ADQQMQESL 70
>gnl|CDD|177283 PHA00451, PHA00451, protein kinase.
Length = 362
Score = 29.0 bits (65), Expect = 2.9
Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 8/70 (11%)
Query: 151 SEKEKLRAE-----IKHNKEMTRSILDAQARAKEEHRQRRAENIKRREENAKKAEIVQVR 205
+E E + + K+ K Q A++ +RR N K R NAK E+ +R
Sbjct: 235 AEVEAIANQRMIERCKNRKAKRDPNGTFQ-VARKAAMKRRKRNRKLRARNAK--ELAAMR 291
Query: 206 RAENIKRREE 215
N RR E
Sbjct: 292 MEANQIRRNE 301
>gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682). The
members of this family are all hypothetical eukaryotic
proteins of unknown function. One member is described as
being an adipocyte-specific protein, but no evidence of
this was found.
Length = 322
Score = 28.8 bits (65), Expect = 2.9
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 9/72 (12%)
Query: 155 KLRAEIKHNKEMTRS-----ILDAQARAKEEHRQRRAENIKRREENAKKAEIVQVRRAEN 209
KL E+ + TR IL A ++E Q + E K+ E AK A++ E
Sbjct: 252 KLSPEVLRKVDKTREEEEEKILKAAEEERQEEAQEKKEEKKKEEREAKLAKL----SPEE 307
Query: 210 IKRREENAKKAE 221
++ EE +K +
Sbjct: 308 QRKLEEKERKKQ 319
>gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y. Members of this family are
RNase Y, an endoribonuclease. The member from Bacillus
subtilis, YmdA, has been shown to be involved in
turnover of yitJ riboswitch [Transcription, Degradation
of RNA].
Length = 514
Score = 28.4 bits (64), Expect = 4.5
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Query: 152 EKEKLRAEI-KHNKEMTR--SILDAQARAKEEHRQRRAENIKRREENAKKAEIVQVRRAE 208
E KLRAE+ + KE L+ + +EE R+ E++ ++EEN +K E + +
Sbjct: 59 EVHKLRAELERELKERRNELQRLERRLLQREETLDRKMESLDKKEENLEKKEKELSNKEK 118
Query: 209 NIKRREENAKK 219
N+ +EE ++
Sbjct: 119 NLDEKEEELEE 129
>gnl|CDD|181845 PRK09425, prpD, 2-methylcitrate dehydratase; Provisional.
Length = 480
Score = 28.3 bits (64), Expect = 4.6
Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 10/55 (18%)
Query: 181 HRQRRAENIKRREENAKKAEIVQVRRAENIKRREENAKKAEIVQVIKNPAKLKRM 235
HR+RRAE I E K N+ R ++ I+ + + +L+ M
Sbjct: 425 HRRRRAEGIPLLVEKFKA----------NLATRFPAKQQQRILDLCLDQERLEAM 469
>gnl|CDD|217010 pfam02387, IncFII_repA, IncFII RepA protein family. This protein
is plasmid encoded and found to be essential for plasmid
replication.
Length = 279
Score = 28.1 bits (63), Expect = 4.9
Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Query: 160 IKHNKEMTRSILDAQARAKEEHRQRRAENIKRREENAKKAEIVQVRRAENIKRREENAKK 219
+K + ++ +A+ RAKE H +R R+ KK RRA + + +E +
Sbjct: 183 LKKKGLIPLTLDEARRRAKEFHIERAFSYRTERKAFGKKR-----RRARKLAKLDEKDIR 237
Query: 220 AEIVQ 224
+I+
Sbjct: 238 KKILN 242
>gnl|CDD|171822 PRK12938, PRK12938, acetyacetyl-CoA reductase; Provisional.
Length = 246
Score = 28.1 bits (62), Expect = 4.9
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 118 GVWEPARRAFFDVRSDVGSFSTMVKTPGLRR 148
G W+ + AF V+++VG +V G+ R
Sbjct: 63 GDWDSTKAAFDKVKAEVGEIDVLVNNAGITR 93
>gnl|CDD|187819 cd09688, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily
protein Cas5. CRISPR (Clustered Regularly Interspaced
Short Palindromic Repeats) and associated Cas proteins
comprise a system for heritable host defense by
prokaryotic cells against phage and other foreign DNA;
Cas5 is a RAMP superfamily protein; Subunit of the
Cascade complex; in subtype I-C this protein might be
the endoribonuclease that generates crRNAs; also known
as DevS family.
Length = 174
Score = 27.4 bits (61), Expect = 5.4
Identities = 14/79 (17%), Positives = 27/79 (34%), Gaps = 11/79 (13%)
Query: 165 EMTRSILDAQARAKEEHRQRRAENIKRREENAKKAEIVQVRRAENIK--------RREEN 216
++ ++L ++ RR + + + E +V NI
Sbjct: 52 KLAIAVLSEPEKSTVLRTFRRFKTKNIDDPKNENPEYQEV--LSNIDFIVWVISGNEGAQ 109
Query: 217 AKKAE-IVQVIKNPAKLKR 234
AE IV+ + NP + R
Sbjct: 110 PTLAERIVEALTNPESVDR 128
>gnl|CDD|235903 PRK06991, PRK06991, ferredoxin; Provisional.
Length = 270
Score = 27.8 bits (62), Expect = 5.4
Identities = 27/101 (26%), Positives = 38/101 (37%), Gaps = 16/101 (15%)
Query: 172 DAQARAKEEHRQRRAENIKRREEN-----AKKAEIVQVRRAENIKR-----REENAKKAE 221
A A A+ H R+A + RE A+ A AE + AKK
Sbjct: 151 QADA-ARARHDARQARLRREREAAEARAAARAAASAAAAAAEASAAAAPAADDAEAKKRA 209
Query: 222 IVQVIKNPAKLKRMKKKQLRLIEKRDTLPIVEKRKAAAQAE 262
I+ A L+R +KK+ L + E AA QA+
Sbjct: 210 IIA-----AALERARKKKEELAAQGAGPKNTEGVSAAVQAQ 245
>gnl|CDD|233063 TIGR00631, uvrb, excinuclease ABC, B subunit. All proteins in this
family for wich functions are known are DNA helicases
that function in the nucleotide excision repair and are
endonucleases that make the 3' incision next to DNA
damage. They are part of a pathway requiring UvrA, UvrB,
UvrC, and UvrD homologs. This family is based on the
phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
Stanford University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 655
Score = 28.0 bits (63), Expect = 6.0
Identities = 14/76 (18%), Positives = 31/76 (40%), Gaps = 1/76 (1%)
Query: 170 ILDAQARAKEEHRQRRAENIKRREENAKKAEIVQVRRAENIKRREENAKKAEIVQVIKNP 229
I D+ +A EE +RR + EE+ + ++ + + + + A +
Sbjct: 553 ITDSMQKAIEETERRRKIQMAYNEEHGITPQTIRKPIRDILDIELKEKEDAAKKKKKGED 612
Query: 230 AKLKRMKKKQLRLIEK 245
KK+ +LI++
Sbjct: 613 LS-DLSKKELKKLIKQ 627
>gnl|CDD|184038 PRK13410, PRK13410, molecular chaperone DnaK; Provisional.
Length = 668
Score = 28.1 bits (63), Expect = 6.1
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 17/67 (25%)
Query: 164 KEMTRSILDAQARAKEEHRQRRAENIKRREENAKKAEIVQVRR-------------AENI 210
+E+ R I +A+A+A +E R+RR E I++R N I Q R AE
Sbjct: 505 QEVNRMIQEAEAKA-DEDRRRR-ERIEKR--NRALTLIAQAERRLRDAALEFGPYFAERQ 560
Query: 211 KRREENA 217
+R E+A
Sbjct: 561 RRAVESA 567
>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional.
Length = 1388
Score = 28.1 bits (63), Expect = 6.3
Identities = 23/113 (20%), Positives = 42/113 (37%), Gaps = 2/113 (1%)
Query: 146 LRRPHSEKEKLRAEIKHN--KEMTRSILDAQARAKEEHRQRRAENIKRREENAKKAEIVQ 203
L +KEK ++K+ K+M LD A EE + + I + + K +
Sbjct: 1107 LNAELEKKEKELEKLKNTTPKDMWLEDLDKFEEALEEQEEVEEKEIAKEQRLKSKTKGKA 1166
Query: 204 VRRAENIKRREENAKKAEIVQVIKNPAKLKRMKKKQLRLIEKRDTLPIVEKRK 256
+ + +++E KK K + + K+ K D P +K
Sbjct: 1167 SKLRKPKLKKKEKKKKKSSADKSKKASVVGNSKRVDSDEKRKLDDKPDNKKSN 1219
>gnl|CDD|224340 COG1422, COG1422, Predicted membrane protein [Function unknown].
Length = 201
Score = 27.3 bits (61), Expect = 6.6
Identities = 11/49 (22%), Positives = 26/49 (53%), Gaps = 7/49 (14%)
Query: 197 KKAEIVQVRRAENIKRREENAKKAEIVQVIKNPAKLKRMKKKQLRLIEK 245
+K + +Q E K E A+++ + KLK++++KQ+ +++
Sbjct: 72 EKMKELQKMMKEFQKEFRE-AQES------GDMKKLKKLQEKQMEMMDD 113
>gnl|CDD|218308 pfam04882, Peroxin-3, Peroxin-3. Peroxin-3 is a peroxisomal
protein. It is thought to be involve in membrane vesicle
assembly prior to the translocation of matrix proteins.
Length = 399
Score = 27.7 bits (62), Expect = 6.7
Identities = 30/123 (24%), Positives = 45/123 (36%), Gaps = 22/123 (17%)
Query: 34 TRSILDAQARAKEEHRQRRAENIKRREENAKKAEIVQVVSFKRLCSRDDCKEWAQLAWGP 93
+ + + Q R EE + E IKRR E +R C+ LA P
Sbjct: 33 QKKLREFQERLAEERFAK--EQIKRRFE-----------QTQRDCNY------TVLALLP 73
Query: 94 ATIEPVMQEASPNSPTLIGDLMQTGVWEPARRAFFDVRSDVGSFSTMVKTPGLRRPHSEK 153
EP+++ I + +Q E A R + S++ S S P+S K
Sbjct: 74 TLSEPILEALPVEE---ITEKLQQKKAESAARTGENSDSELTSASASEADESSPSPYSPK 130
Query: 154 EKL 156
KL
Sbjct: 131 SKL 133
>gnl|CDD|240309 PTZ00189, PTZ00189, 60S ribosomal protein L21; Provisional.
Length = 160
Score = 27.3 bits (61), Expect = 6.9
Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 6/53 (11%)
Query: 176 RAKEEHRQRRAENIKRREENAKKAEIVQVRRAENIKRREENAKKAEIVQVIKN 228
R +E+ +R A N + E KK E+ + KR+ + A V+
Sbjct: 100 RCREDFLKRVAANDAIKAEAKKKGELP------STKRQPAQPRPAGFVKPKPT 146
>gnl|CDD|215590 PLN03123, PLN03123, poly [ADP-ribose] polymerase; Provisional.
Length = 981
Score = 27.8 bits (62), Expect = 7.0
Identities = 19/105 (18%), Positives = 39/105 (37%), Gaps = 4/105 (3%)
Query: 149 PHSEKEKLRAEIKHNKEMTRSILDAQARAKEEHRQRRAENIKRRE--ENAKKAEIVQVRR 206
S++E + +K + + + + + + +R ++ + + AK V
Sbjct: 172 SDSDQEAVLPLVKKSPSEAKEEKAEERKQESKKGAKRKKDASGDDKSKKAKTDRDVSTST 231
Query: 207 AENIKRREENAKKAEIVQVIKNPAKLKRMKKKQLRLIEKRDTLPI 251
A + K+ + K E K LK KK + E R+ L
Sbjct: 232 AASQKKSSDLESKLE--AQSKELWSLKDDLKKHVSTAELREMLEA 274
>gnl|CDD|216807 pfam01956, DUF106, Integral membrane protein DUF106. This
archaebacterial protein family has no known function.
Members are predicted to be integral membrane proteins.
Length = 168
Score = 26.8 bits (60), Expect = 8.6
Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 7/49 (14%)
Query: 197 KKAEIVQVRRAENIKRREENAKKAEIVQVIKNPAKLKRMKKKQLRLIEK 245
+K E Q R E KR E +K + K+ +K+Q L+E
Sbjct: 40 RKMEKYQKREKEIQKRARE-LRKN------GDKLSPKKFEKRQEELMED 81
>gnl|CDD|163696 cd08065, MPN_eIF3h, Mpr1p, Pad1p N-terminal (MPN) domains without
catalytic isopeptidase activity, found in eIF2h.
Eukaryotic translation initiation factor 3 (eIF3)
subunit h (eIF3h; eIF3 subunit 3; eIF3S3; eIF3-gamma;
eIF3-p40) is an evolutionarily non-conserved subunit of
the functional core that comprises eIF3a, eIF3b, eIF3c,
eIF3e, eIF3f, and eIF3h, and contains the MPN domain.
However, it lacks the canonical JAMM motif, and
therefore does not show catalytic isopeptidase
activity.Together with eIF3e and eIF3f, eIF3h stabilizes
the eIF3 complex. Results suggest that eIF3h regulates
cell growth and viability, and that over-expression of
the gene may provide growth advantage to prostate,
breast, and liver cancer cells. For example, EIF3h gene
amplification is common in late-stage prostate cancer
suggesting that it may be functionally involved in the
progression of the disease. It has been shown that
coamplification of MYC, a well characterized oncogene
involved in cell growth, differentiation, and apoptosis,
and EIF3h in patients with non-small cell lung cancer
(NSCLC) improves survival if treated with the Epidermal
Growth Factor Receptor Tyrosine Kinase Inhibitor
(EGFR-TKI), Gefitinib. Plant eIF3h is implicated in
translation of specific mRNAs.
Length = 266
Score = 27.2 bits (61), Expect = 8.9
Identities = 12/43 (27%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 21 EKLRAEI-KHNKEMTRSILDAQARAKEEHRQRRAENIKRREEN 62
++L E K N R++ QA+ ++ ++R+AEN +R
Sbjct: 217 DELSQEQGKFNYY-QRNLARQQAQIQQWLQKRKAENAQREARG 258
Score = 27.2 bits (61), Expect = 8.9
Identities = 12/43 (27%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 154 EKLRAEI-KHNKEMTRSILDAQARAKEEHRQRRAENIKRREEN 195
++L E K N R++ QA+ ++ ++R+AEN +R
Sbjct: 217 DELSQEQGKFNYY-QRNLARQQAQIQQWLQKRKAENAQREARG 258
>gnl|CDD|132386 TIGR03343, biphenyl_bphD, 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate
hydrolase. Members of this family are
2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or
HOPD hydrolase, the BphD protein of biphenyl
degradation. BphD acts on the product of ring
meta-cleavage by BphC. Many species carrying bphC and
bphD are capable of degrading polychlorinated biphenyls
as well as biphenyl itself.
Length = 282
Score = 27.2 bits (60), Expect = 9.6
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 31 KEMTRSILDAQARAKEEHRQRRAENIKRREENAK 64
K+M L Q+ EE Q R ENI+R+ E+ K
Sbjct: 166 KQMLNVFLFDQSLITEELLQGRWENIQRQPEHLK 199
Score = 27.2 bits (60), Expect = 9.6
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 164 KEMTRSILDAQARAKEEHRQRRAENIKRREENAK 197
K+M L Q+ EE Q R ENI+R+ E+ K
Sbjct: 166 KQMLNVFLFDQSLITEELLQGRWENIQRQPEHLK 199
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.314 0.127 0.347
Gapped
Lambda K H
0.267 0.0788 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,368,220
Number of extensions: 1305840
Number of successful extensions: 3712
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3078
Number of HSP's successfully gapped: 474
Length of query: 262
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 167
Effective length of database: 6,723,972
Effective search space: 1122903324
Effective search space used: 1122903324
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.0 bits)