RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1453
(262 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 44.3 bits (104), Expect = 2e-05
Identities = 49/290 (16%), Positives = 92/290 (31%), Gaps = 84/290 (28%)
Query: 29 HNKEMTRSILDAQARAKE--EHRQRRAENIKRREENAKKAEIVQ------VVSF-----K 75
+ M + A++ RA+N + +IV + F K
Sbjct: 1627 QEQGMGMDLYKTSKAAQDVWN----RADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGK 1682
Query: 76 RLCSRDDCKEWAQLAWGPATIEPVMQEASPNSPTLI-----GDLMQTGVWEPA----RRA 126
R+ + + G E + +E + +S + G L T +PA +A
Sbjct: 1683 RIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKA 1742
Query: 127 FF-DVRSDVGSFSTMVKTPGLRRPHSEKEKL--------RAEIKHNKEMT---------- 167
F D++S G G HS L A++ M+
Sbjct: 1743 AFEDLKSK-GLIPADATFAG----HS----LGEYAALASLADV-----MSIESLVEVVFY 1788
Query: 168 RSILDAQARAKEEHRQRR----AENIKRREENAKKAEIVQVRRAENIKRREENAKKAEIV 223
R + A ++E + A N R + + + V E + + EIV
Sbjct: 1789 RGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYV--VERVG--KRTGWLVEIV 1844
Query: 224 -------QVI---KNPA------KLKRMKKKQLRLIEKRDTLPIVEKRKA 257
Q + A L +K +++ +IE + +L + E+ +
Sbjct: 1845 NYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSL-EEVEG 1893
Score = 39.3 bits (91), Expect = 0.001
Identities = 30/204 (14%), Positives = 64/204 (31%), Gaps = 61/204 (29%)
Query: 4 FSTMVKTPGLRRPHSEKEKLRAEIKHNKEMTRSILDAQARAKEEHRQRRAENIKRREENA 63
+ K G P + L+ H++ + ++ A+ + E +
Sbjct: 249 YVVTAKLLGFT-PGELRSYLKGATGHSQGLVTAVAIAETDSWESF-----------FVSV 296
Query: 64 KKAEIVQVVSFKRLCSRDDCKEW----AQLAWGPATIEP-VMQEASPN-----SPTL-IG 112
+KA + V F + A+ ++ P +++++ N SP L I
Sbjct: 297 RKA--ITV-LF-----------FIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSIS 342
Query: 113 DLMQTGVWEPARR--AFFDVRSDVG-----SFSTMVKTPG----LRRPHSEKEKLRAEIK 161
+L Q V + + + V +V + G L + K +A
Sbjct: 343 NLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVS-GPPQSLYGLNLTLRKAKAPSG 401
Query: 162 HNKEMTRSILDAQARAKEEHRQRR 185
+ Q+R +R+
Sbjct: 402 LD----------QSRIP--FSERK 413
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.0 bits (82), Expect = 0.010
Identities = 36/224 (16%), Positives = 63/224 (28%), Gaps = 55/224 (24%)
Query: 14 RRPHSEKEKLRAEIKHNKEMTRS--ILDAQARAKE----EHRQR-----RAENIKRREEN 62
R HS + +LR +K K +L AK + R + +
Sbjct: 225 LRIHSIQAELRRLLKS-KPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSA 283
Query: 63 AKKAEIVQVVSFKRLCSRDDCKE-WAQLAWGPATIEPVMQEASPNSP---TLIGDLMQTG 118
A I L + D+ K + P +E +P ++I + ++ G
Sbjct: 284 ATTTHISLDHHSMTL-TPDEVKSLLLKYLDCRPQDLP--REVLTTNPRRLSIIAESIRDG 340
Query: 119 V--WEPARRAFFDVRSDVGSFSTMVKTPGLRRPH-------------------------- 150
+ W+ + D + + S V P R
Sbjct: 341 LATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI 400
Query: 151 -SEKEKLRAEI-------KHNKEMTRSILDAQARAKEEHRQRRA 186
S+ + ++ K KE T SI K + A
Sbjct: 401 KSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYA 444
Score = 31.7 bits (71), Expect = 0.27
Identities = 36/223 (16%), Positives = 67/223 (30%), Gaps = 64/223 (28%)
Query: 28 KHNKEMTRSILDAQARAKEEHRQRRAENIKRREENAKKAEIVQVVSFKR-LCSRDDCKEW 86
K KE T SI K +K E A IV + + S D +
Sbjct: 419 KQPKESTISIPSIYLELK----------VKLENEYALHRSIVDHYNIPKTFDSDDLIPPY 468
Query: 87 AQLAWGPATIEPVMQEASPNSPTLIG----DLMQTGVWEPARRAFFDVRSDVGSFSTMVK 142
+ + IG ++ R F D R F
Sbjct: 469 LDQYFY----------------SHIGHHLKNIEHPERMTLFRMVFLDFR-----F----- 502
Query: 143 TPGLRRPHSEKEKLRAEIKHNKEMTRSILDAQARAKEEHRQRRAENIKRREENAKKAEIV 202
L + K+R + + SIL+ + K ++ +N + E
Sbjct: 503 ---LEQ------KIRHD-STAWNASGSILNTLQQLK-FYKPYICDNDPKYERLVNAIL-- 549
Query: 203 QVRRAENIKRREEN---AKKAEIVQV-IKNPAK-LKRMKKKQL 240
+ + + EEN +K +++++ + + + KQ+
Sbjct: 550 -----DFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQV 587
Score = 31.0 bits (69), Expect = 0.45
Identities = 21/145 (14%), Positives = 44/145 (30%), Gaps = 29/145 (20%)
Query: 112 GDLMQTGVWEPARRAFFDVRSDVGSFSTMVKTPG-----LRRPHSEKEKLRA----EIKH 162
D++ V+E A FD + DV + + + + LR K
Sbjct: 19 KDILS--VFEDAFVDNFDCK-DVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQ 75
Query: 163 NKEMTRSILDA--------QARAKEEHRQRRAENIKRREENAKKAEIVQVRRAENIKRRE 214
+ + + + + + K E RQ E+ + QV N+ R +
Sbjct: 76 EEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQ 135
Query: 215 ENAKKAEIVQVIKNPAKLKRMKKKQ 239
++ L ++ +
Sbjct: 136 P-------YLKLRQ--ALLELRPAK 151
Score = 30.2 bits (67), Expect = 0.78
Identities = 30/179 (16%), Positives = 59/179 (32%), Gaps = 50/179 (27%)
Query: 21 EKLRAEIKHNKEMTRSILDAQARAKEEHRQRRAENIKRREE---------NAKKAEIV-- 69
++ E + MTR ++ + R +++ N+ R + + A+ V
Sbjct: 96 SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI 155
Query: 70 -------------QVV-SFKRLCSRDDCKEWAQLAWGPATIEPVMQEASPNSPTLIGDLM 115
V S+K C D ++ W + + NSP + +++
Sbjct: 156 DGVLGSGKTWVALDVCLSYKVQCKMDF-----KIFW--------LNLKNCNSPETVLEML 202
Query: 116 QTGVWEPARRAFFDVRSDVGSFSTMVKTPGLRRPHSEKEKLRAEIKHNKEMTRS--ILD 172
Q + + + S S L R HS + +LR +K K +L
Sbjct: 203 QK--------LLYQIDPNWTSRSDHSSNIKL-RIHSIQAELRRLLKS-KPYENCLLVLL 251
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase,
ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET:
ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Length = 773
Score = 35.8 bits (83), Expect = 0.011
Identities = 18/108 (16%), Positives = 38/108 (35%), Gaps = 5/108 (4%)
Query: 154 EKLRAEIKHNKEMTRSILDAQARAKEEHRQRRAENIKRREENAKKAEIVQVRRAENIKRR 213
K R +H + SI + A EE ++ + + E ++R
Sbjct: 3 SKRRFSSEHPDPVETSIPEQAAEIAEELSKQHPLPSEEPLVHHDAGEFKGLQRHHTSAEE 62
Query: 214 EENAKKAEIVQVIKNPAKLKRMKKKQLRLIEKRDTLPIVEKRKAAAQA 261
+ + +I NP + K + +++ R LP+ +R +
Sbjct: 63 AQKLEDGKI-----NPFTGREFTPKYVDILKIRRELPVHAQRDEFLKL 105
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 34.7 bits (80), Expect = 0.030
Identities = 17/98 (17%), Positives = 36/98 (36%), Gaps = 7/98 (7%)
Query: 152 EKEKLRAEIKHNKEMTRSILDAQARAKEEHRQRRAENIKRREENAK-KAEIVQVRRAENI 210
L +I ++ R I + K + I E K ++++ ++R +E
Sbjct: 922 LHIGLENKIM---QLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEE 978
Query: 211 KRREENAKKA---EIVQVIKNPAKLKRMKKKQLRLIEK 245
+ N + EI ++ K + + KK +K
Sbjct: 979 AKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADK 1016
Score = 27.8 bits (62), Expect = 4.1
Identities = 13/119 (10%), Positives = 34/119 (28%), Gaps = 4/119 (3%)
Query: 148 RPHSEKEKLRAEIKHNKEMTRSILDAQARAKEEHRQRRAENIKRREENAKKAEIVQVRRA 207
R + + + + +L + R K +Q
Sbjct: 839 RDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYR 898
Query: 208 ENIKRREENAKKAE---IVQVIKNPAKL-KRMKKKQLRLIEKRDTLPIVEKRKAAAQAE 262
+ +RE K E + + K L ++ + Q ++ E+ + ++ +
Sbjct: 899 RMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEIT 957
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex,
cytoplasm, ribonucleoprotein, structural protein; 3.50A
{Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Length = 861
Score = 31.7 bits (71), Expect = 0.24
Identities = 20/112 (17%), Positives = 39/112 (34%), Gaps = 1/112 (0%)
Query: 152 EKEKLRAEIKHNKEMTRSILDAQARAKEEHRQRRAENIKRREENAKKAEIVQVRRAENIK 211
E++K+ + + K + E + R E A+ V +A+
Sbjct: 689 ERQKILDQSEAEKARKELLELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLKA 748
Query: 212 RREENAKKAEIVQVIK-NPAKLKRMKKKQLRLIEKRDTLPIVEKRKAAAQAE 262
+ +AE+ +V K +L + + + K L VE +K E
Sbjct: 749 QALAIETEAELERVKKVREMELIYARAQLELEVSKAQQLANVEAKKFKEMTE 800
Score = 28.6 bits (63), Expect = 2.2
Identities = 18/120 (15%), Positives = 42/120 (35%), Gaps = 9/120 (7%)
Query: 152 EKEKLRAEIKHNKEMTRSILDAQARAKEEHRQRR---------AENIKRREENAKKAEIV 202
+ K E++ S +A+A A+ R A+ + +AE+
Sbjct: 701 KARKELLELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIETEAELE 760
Query: 203 QVRRAENIKRREENAKKAEIVQVIKNPAKLKRMKKKQLRLIEKRDTLPIVEKRKAAAQAE 262
+V++ ++ A+ V + A ++ K K++ T+ + Q +
Sbjct: 761 RVKKVREMELIYARAQLELEVSKAQQLANVEAKKFKEMTEALGPGTIRDLAVAGPEMQVK 820
Score = 27.9 bits (61), Expect = 3.9
Identities = 22/122 (18%), Positives = 43/122 (35%), Gaps = 7/122 (5%)
Query: 147 RRPHSEKEKLRAEIKHNKEMTRSILDAQARAKE------EHRQRRAENIKRREENAKKAE 200
+ ++ E R E + + R + Q+ A++ E A+
Sbjct: 669 QEAAAKHEAQRLEQEARGRLERQKILDQSEAEKARKELLELEAMSMAVESTGNAKAEAES 728
Query: 201 IVQVRRAENIKRREENAKKAEIVQVIKNPAKLKRMKKKQLRLIEKRDTLPIVEKRKAAAQ 260
+ R E + KA+ + I+ A+L+R+KK + + +E KA
Sbjct: 729 RAEAARIEGEGSVLQAKLKAQALA-IETEAELERVKKVREMELIYARAQLELEVSKAQQL 787
Query: 261 AE 262
A
Sbjct: 788 AN 789
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.7 bits (66), Expect = 0.62
Identities = 16/74 (21%), Positives = 34/74 (45%), Gaps = 10/74 (13%)
Query: 148 RPHSEKEKLRAEIKHNKEMTRSILDAQARAKEEHRQRRAENIKRREENAKKAEIVQVRRA 207
R E E +R + ++ + LDA ++ E+ + RE+ K E R++
Sbjct: 79 RLTQEPESIRKWREEQRKRLQE-LDAASKVMEQ---------EWREKAKKDLEEWNQRQS 128
Query: 208 ENIKRREENAKKAE 221
E +++ + N + A+
Sbjct: 129 EQVEKNKINNRIAD 142
Score = 29.7 bits (66), Expect = 0.75
Identities = 11/68 (16%), Positives = 31/68 (45%), Gaps = 8/68 (11%)
Query: 152 EKEKLRAEIK--HNKEMTRSILDAQARAKEEHRQRRAENIKRREENAKKAEIVQVRRAEN 209
E+++ R + +K M + + + EE QR++E +++ + N + A+
Sbjct: 92 EEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIAD------KAF 145
Query: 210 IKRREENA 217
++ + +
Sbjct: 146 YQQPDADI 153
Score = 27.8 bits (61), Expect = 2.6
Identities = 11/51 (21%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 19 EKEKLRAEIK--HNKEMTRSILDAQARAKEEHRQRRAENIKRREENAKKAE 67
E+++ R + +K M + + + EE QR++E +++ + N + A+
Sbjct: 92 EEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIAD 142
>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase,
conformationa thioester, adenylation,
transthioesterification, ATP-bindin nucleotide-binding;
2.70A {Saccharomyces cerevisiae}
Length = 1015
Score = 30.6 bits (68), Expect = 0.65
Identities = 32/233 (13%), Positives = 72/233 (30%), Gaps = 19/233 (8%)
Query: 1 MELFSTMVKTPGLRRPHSEKEKLRAEIKHNKEMTRSILDAQARAKEE-------HRQRRA 53
E +S+ P P +I H +S+ E
Sbjct: 574 TESYSSSRDPPEKSIPLCTLRSFPNKIDHTIAWAKSLFQGYFTDSAENVNMYLTQPNFVE 633
Query: 54 ENIKRREENAKKAEIVQVVSFKRLCSRDDCKEWAQLAWG---PATIEPVMQEASPNSPTL 110
+ +K+ + E + + + +DC +WA+L + I+ ++ ++ T
Sbjct: 634 QTLKQSGDVKGVLESISDSLSSKPHNFEDCIKWARLEFEKKFNHDIKQLLFNFPKDAKTS 693
Query: 111 IGDLMQTGVWEPARRA----FFDVRSDVGSFSTMVKTPGLRRPHSEKEKLRAEIKHNKEM 166
G+ W A+RA FD+ + F +V LR + + + K N +
Sbjct: 694 NGEPF----WSGAKRAPTPLEFDI-YNNDHFHFVVAGASLRAYNYGIKSDDSNSKPNVDE 748
Query: 167 TRSILDAQARAKEEHRQRRAENIKRREENAKKAEIVQVRRAENIKRREENAKK 219
+S++D + + + + + + +
Sbjct: 749 YKSVIDHMIIPEFTPNANLKIQVNDDDPDPNANAANGSDEIDQLVSSLPDPST 801
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase,
nuclease, double strand DNA repair, protein-DNA CO
hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus
subtilis} PDB: 3u44_B*
Length = 1166
Score = 30.5 bits (68), Expect = 0.66
Identities = 21/184 (11%), Positives = 46/184 (25%), Gaps = 35/184 (19%)
Query: 21 EKLRAEIKHNKEMTRSILDAQARAKEEHRQRRAENIKRREENAKKAEIVQVVSFKRLCSR 80
++ E++ I + A+ QV SF RL R
Sbjct: 20 NSIQDELRRAPFGKPIIFLVPDQMTFLMEYELAKTPDMGGMIR-----AQVFSFSRLAWR 74
Query: 81 DDCKEWAQLAWGPATIEPVMQEASPNSPTLIGDLMQTGVWEPARRAFFDVRSDVGSFSTM 140
V+Q S + + R+ + + + +
Sbjct: 75 ------------------VLQHTGGMSRPFLTSTGVQML---LRKLIEEHKQEFKVYQKA 113
Query: 141 VKTPGLRRPHSEKEKLRAEIKHNKEMTRSILDAQARAKEEHRQRRAENIKRREENAKKAE 200
G ++ + E R L+ + + +E R + K +
Sbjct: 114 SDKSGF------TAQVERML---TEFKRYCLEPEDIRRMAESGTASEYRGERVLSEKLHD 164
Query: 201 IVQV 204
+ +
Sbjct: 165 LSIL 168
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 29.4 bits (66), Expect = 1.4
Identities = 14/115 (12%), Positives = 38/115 (33%), Gaps = 5/115 (4%)
Query: 153 KEKLRAEIKHNKEMTRSILDAQARAKEEHRQRRAENIKRREENAKKAEIVQVRRAENIKR 212
+EKL+AE + E + A+ +E + EE + ++ ++ +
Sbjct: 898 QEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQM 957
Query: 213 REENAKKAEIVQVIKNPAKLKRMKKKQLR-----LIEKRDTLPIVEKRKAAAQAE 262
+ + E + K +++ ++ D + K + +
Sbjct: 958 LDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEER 1012
>2jcb_A 5-formyltetrahydrofolate cyclo-ligase family PROT; folate
metabolism; HET: ADP; 1.6A {Bacillus anthracis}
Length = 200
Score = 27.6 bits (62), Expect = 3.6
Identities = 8/29 (27%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 234 RMKKKQLR--LIEKRDTLPIVEKRKAAAQ 260
R +K +LR +IE ++L + Q
Sbjct: 10 REEKLRLRKQIIEHMNSLSKERYTTLSEQ 38
>1mty_D Methane monooxygenase hydroxylase; dinuclear iron center
monooxygenase; 1.70A {Methylococcus capsulatus str}
SCOP: a.25.1.2 PDB: 1mmo_D 1xvb_A 1fyz_A 1fz0_A 1fz2_A
1fz3_A 1fz4_A 1fz5_A 1fz6_A 1fz7_A 1fz8_A 1fz9_A 1fzh_A
1fzi_A 1xmf_A 1xmg_A 1xmh_A 1xu3_A 1xu5_A 1fz1_A ...
Length = 512
Score = 27.7 bits (61), Expect = 5.0
Identities = 10/112 (8%), Positives = 29/112 (25%), Gaps = 8/112 (7%)
Query: 24 RAEIKHNKEMTRSILDAQARAKEEHRQRRAENIKRREENAKKAEIVQVVSFKRLCSRDDC 83
+ E+T ++ + + H + + + A+ + + +
Sbjct: 208 EWAAANGDEITPTVFLSIETDELRHMANGYQTVVSIANDPASAKYLN--------TDLNN 259
Query: 84 KEWAQLAWGPATIEPVMQEASPNSPTLIGDLMQTGVWEPARRAFFDVRSDVG 135
W Q + + + + S V+E + G
Sbjct: 260 AFWTQQKYFTPVLGMLFEYGSKFKVEPWVKTWDRWVYEDWGGIWIGRLGKYG 311
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC
repeat; 2.70A {Saccharomyces cerevisiae}
Length = 963
Score = 27.5 bits (60), Expect = 5.5
Identities = 14/109 (12%), Positives = 39/109 (35%), Gaps = 3/109 (2%)
Query: 151 SEKEKLRAEIKHNKEMTRSILDAQARAKEEHRQRRAENIKRREENAKKAEIVQVRRAENI 210
K ++ T + A+A+ ++ + E K+ E +K + +
Sbjct: 801 EASGKEVEKVATAVLSTTARAKARAKKTKKEKGPNEEEKKKEHEEKEKERETNKKGIKET 860
Query: 211 KRREENAKKAEI---VQVIKNPAKLKRMKKKQLRLIEKRDTLPIVEKRK 256
K +E K + + N ++ + + + I+ +P+ + +
Sbjct: 861 KENDEEFYKNKYSSKPYKVDNMTRILPQQSRYISFIKDDRFVPVRKFKG 909
>1sbq_A H91_ORF164, 5,10-methenyltetrahydrofolate synthetase homolog;
MTHFS, 5- formyltetrahydrofolate cyclo-ligase,
structural genomics; 2.20A {Mycoplasma pneumoniae} SCOP:
c.124.1.6 PDB: 1u3f_A* 1u3g_A*
Length = 189
Score = 26.9 bits (60), Expect = 5.7
Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Query: 233 KRMKKKQLR--LIEKRDTLPIVEKRKAAAQ 260
M K LR +++KR L +EK +
Sbjct: 24 GHMDKNALRKQILQKRMALSTIEKSHLDQK 53
>1jvw_A Macrophage infectivity potentiator; chagas disease, X-RAY
rotamase, isomeras; 1.70A {Trypanosoma cruzi} SCOP:
d.26.1.1
Length = 167
Score = 26.6 bits (59), Expect = 5.7
Identities = 7/35 (20%), Positives = 16/35 (45%)
Query: 39 DAQARAKEEHRQRRAENIKRREENAKKAEIVQVVS 73
DA + + + R+ E+ A + + V++ S
Sbjct: 3 DAASHEERMNNYRKRVGRLFMEQKAAQPDAVKLPS 37
Score = 26.6 bits (59), Expect = 6.2
Identities = 6/31 (19%), Positives = 13/31 (41%)
Query: 172 DAQARAKEEHRQRRAENIKRREENAKKAEIV 202
DA + + + R+ E+ A + + V
Sbjct: 3 DAASHEERMNNYRKRVGRLFMEQKAAQPDAV 33
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.127 0.347
Gapped
Lambda K H
0.267 0.0763 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,874,550
Number of extensions: 235030
Number of successful extensions: 972
Number of sequences better than 10.0: 1
Number of HSP's gapped: 897
Number of HSP's successfully gapped: 118
Length of query: 262
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 170
Effective length of database: 4,133,061
Effective search space: 702620370
Effective search space used: 702620370
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (25.3 bits)