RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1453
         (262 letters)



>d1wuis1 e.19.1.1 (S:1-267) Nickel-iron hydrogenase, small subunit
           {Desulfovibrio vulgaris [TaxId: 881]}
          Length = 267

 Score = 26.4 bits (58), Expect = 3.3
 Identities = 12/58 (20%), Positives = 16/58 (27%), Gaps = 3/58 (5%)

Query: 38  LDAQARAKEEHRQRRAENIKRREENAKKAEIVQVVSFKRLCSRDDCKEWAQLAWGPAT 95
           LD+  R      Q   E   R              SF+   +R     +     GP T
Sbjct: 173 LDSLNRPTMFFGQTVHEQCPRLPHFDAGEF---APSFESEEARKGWCLYELGCKGPVT 227


>d3cx5b2 d.185.1.1 (B:219-368) Cytochrome bc1 core subunit 2
           {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 150

 Score = 26.0 bits (57), Expect = 3.9
 Identities = 15/75 (20%), Positives = 31/75 (41%), Gaps = 3/75 (4%)

Query: 126 AFFDVRSDVGSFSTMVKTPGLRRPHSEKEKLRAEIKHNKEMTRSILDAQARAK-EEHRQR 184
           A  D  +D G F+  V+        S  +K+ A++K  K+++ +I     + K     + 
Sbjct: 56  AKLDKFTDGGLFTLFVRDQDSAVVSSNIKKIVADLKKGKDLSPAI--NYTKLKNAVQNES 113

Query: 185 RAENIKRREENAKKA 199
            +  I+   +  K  
Sbjct: 114 VSSPIELNFDAVKDF 128


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.314    0.127    0.347 

Gapped
Lambda     K      H
   0.267   0.0626    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 913,131
Number of extensions: 42683
Number of successful extensions: 197
Number of sequences better than 10.0: 1
Number of HSP's gapped: 188
Number of HSP's successfully gapped: 29
Length of query: 262
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 178
Effective length of database: 1,254,276
Effective search space: 223261128
Effective search space used: 223261128
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.0 bits)