BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14531
(222 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2GSX|A Chain A, Complement Receptor Type 2
Length = 951
Score = 74.7 bits (182), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 91/216 (42%), Gaps = 28/216 (12%)
Query: 11 GQWSGEVPTCQ----QIICPK-IVVENPYLTLVEQNNTYRGHAIFQCSWGYQLKGPPDIV 65
G WSG P C+ + CP ++ ++ + TY IF C +G+ LKG I
Sbjct: 313 GTWSGPAPRCELSTSAVQCPHPQILRGRMVSGQKDRYTYNDTVIFACMFGFTLKGSKQIR 372
Query: 66 CQKNGSWSGAIPECNAXXXXXXXXXXNPVHCPVPALPLNGHLIEDPTGGPYRVGAILQFA 125
C G+W + P C C P LNG ED + G ++++
Sbjct: 373 CNAQGTWEPSAPVCEK-------------ECQAPPNILNGQK-EDRHMVRFDPGTSIKYS 418
Query: 126 CNDRHHLLGEETIVCTETGRWSRAPPRCK-ARCEYPGEPQNGKIIPLKFFYDPGDHIQVT 184
CN + L+GEE+I CT G W+ P+CK A CE G K P F P + +
Sbjct: 419 CNPGYVLVGEESIQCTSEGVWTPPVPQCKVAACEATGRQLLTK--PQHQFVRP--DVNSS 474
Query: 185 CNDGYVKPLDITPTSGPYCQSDGTWSLDIPHCTNYT 220
C +GY ++ + CQ W ++I C T
Sbjct: 475 CGEGY----KLSGSVYQECQGTIPWFMEIRLCKEIT 506
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 74/187 (39%), Gaps = 25/187 (13%)
Query: 11 GQWSGEVPTCQQI----ICPKIVVENPYLTLVEQNNTYRGHAIFQCSWGYQLKGPPDIVC 66
G W P C+ CP+ +V Y + F C + + G + C
Sbjct: 53 GTWDKPAPKCEYFNKYSSCPEPIVPGGYKIRGSTPYRHGDSVTFACKTNFSMNGNKSVWC 112
Query: 67 QKNGSWS-GAIPECNAXXXXXXXXXXNPVHCPVPALPLNGHLIEDPTGGPYRVGAILQFA 125
Q N W +P C + P+ CP + NGH + G G + ++
Sbjct: 113 QANNMWGPTRLPTCVSVF---------PLECPALPMIHNGHHTSENVGS-IAPGLSVTYS 162
Query: 126 CNDRHHLLGEETIVCTETGRWSRAPPRC-KARCEYPGEPQNGKI---------IPLKFFY 175
C + L+GE+ I C +G+WS PP C +ARC+ G NGK+ + FF
Sbjct: 163 CESGYLLVGEKIINCLSSGKWSAVPPTCEEARCKSLGRFPNGKVKEPPILRVGVTANFFC 222
Query: 176 DPGDHIQ 182
D G +Q
Sbjct: 223 DEGYRLQ 229
Score = 63.9 bits (154), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 95/218 (43%), Gaps = 29/218 (13%)
Query: 10 QGQWSGEVPTCQQ----IICPKIVVENPYLTLVEQNNTYRGHAIF--QCSWGYQLKGPPD 63
G WSG P C + CP V++ Y L + ++ Y + I C+ G+ + G
Sbjct: 749 HGSWSGPSPQCLRSPPVTRCPNPEVKHGY-KLNKTHSAYSHNDIVYVDCNPGFIMNGSRV 807
Query: 64 IVCQKNGSWSGAIPECNAXXXXXXXXXXNPVHCPVPALPLNGHLIEDPTGG---PYRVGA 120
I C + +W +P C + CP P NG + TGG + G
Sbjct: 808 IRCHTDNTWVPGVPTCIKKAF---------IGCPPPPKTPNG----NHTGGNIARFSPGM 854
Query: 121 ILQFACNDRHHLLGEETIVCTETGRWSRAPPRCK-ARCEYPGEPQN-GKIIPLKFFYDPG 178
+ ++C+ + L+GE ++CT G WS+ P CK C P + K + + Y G
Sbjct: 855 SILYSCDQGYLLVGEALLLCTHEGTWSQPAPHCKEVNCSSPADMDGIQKGLEPRKMYQYG 914
Query: 179 DHIQVTCNDGYVKPLDITPTSGPYCQSDGTWSLDIPHC 216
+ + C DGY+ L+ +P S CQSD W+ + C
Sbjct: 915 AVVTLECEDGYM--LEGSPQS--QCQSDHQWNPPLAVC 948
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 62/234 (26%), Positives = 92/234 (39%), Gaps = 50/234 (21%)
Query: 8 VSQGQWSGEVPTCQQIICPKI-------VVENPYLTLVEQNNTYRGHAIFQCSWGYQLKG 60
+S G+WS PTC++ C + V E P L + N F C GY+L+G
Sbjct: 178 LSSGKWSAVPPTCEEARCKSLGRFPNGKVKEPPILRVGVTAN-------FFCDEGYRLQG 230
Query: 61 PPDIVCQKNG---SWSGAIPECNAXXXXXXXXXXNPVHCPVPALPLNGHLIEDPTGGPYR 117
PP C G +W+ +P C + CP P LNG I +
Sbjct: 231 PPSSRCVIAGQGVAWT-KMPVCEE------------IFCPSPPPILNGRHIGNSLAN-VS 276
Query: 118 VGAILQFACND------RHHLLGEETIVCT----ETGRWSRAPPRCK-----ARCEYPGE 162
G+I+ + C+ L+GE T+ CT +TG WS PRC+ +C +P
Sbjct: 277 YGSIVTYTCDPDPEEGVNFILIGESTLRCTVDSQKTGTWSGPAPRCELSTSAVQCPHPQI 336
Query: 163 PQNGKIIPLKFFYDPGDHIQVTCNDGYVKPLDITPTSGPYCQSDGTWSLDIPHC 216
+ + K Y D + C G+ + + C + GTW P C
Sbjct: 337 LRGRMVSGQKDRYTYNDTVIFACMFGFT----LKGSKQIRCNAQGTWEPSAPVC 386
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/222 (26%), Positives = 86/222 (38%), Gaps = 40/222 (18%)
Query: 10 QGQWSGEVPTCQ----QIICPKIVVENPY-LTLVEQNNTYRGHAIFQCSWGYQLKGPPDI 64
+G WSG P C+ + C + + N Y ++ E Y F+C G+ LKG I
Sbjct: 563 RGTWSGPAPLCKLSLLAVQCSHVHIANGYKISGKEAPYFYNDTVTFKCYSGFTLKGSSQI 622
Query: 65 VCQKNGSWSGAIPECNAXXXXXXXXXXNPVHCPVPALPLNGHLIEDPTGGPYRVGAILQF 124
C+ + +W IP C + L E P G RV ++
Sbjct: 623 RCKADNTWDPEIPVCEKETCQH----------------VRQSLQELPAGS--RV-ELVNT 663
Query: 125 ACNDRHHLLGEETIVC--TETGRWSRAPPRCKA-RCEYPGEPQNGK---IIPLKFFYDPG 178
+C D + L G +C E G W + P CK C P NGK ++ F Y G
Sbjct: 664 SCQDGYQLTGHAYQMCQDAENGIWFKKIPLCKVIHCHPPPVIVNGKHTGMMAENFLY--G 721
Query: 179 DHIQVTCNDGYVKPLDITPTSGPYCQSD----GTWSLDIPHC 216
+ + C+ G+ + C+SD G+WS P C
Sbjct: 722 NEVSYECDQGFY----LLGEKKLQCRSDSKGHGSWSGPSPQC 759
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 64/233 (27%), Positives = 87/233 (37%), Gaps = 45/233 (19%)
Query: 8 VSQGQWSGEVPTCQQIICPKIVVENPYLTLVEQNNTYRGHAIFQCSWGYQLKGPPDIVCQ 67
S+G W+ VP C+ C + L Q+ R C GY+L G CQ
Sbjct: 434 TSEGVWTPPVPQCKVAACEATGRQ---LLTKPQHQFVRPDVNSSCGEGYKLSGSVYQECQ 490
Query: 68 KNGSWSGAIPECNAXXXXXXXXXXNPVHCPVPALPLNG-HLIEDPTGGPYRVGAILQFAC 126
W I C + CP P + NG H PY G + + C
Sbjct: 491 GTIPWFMEIRLCKE------------ITCPPPPVIYNGAHTGSSLEDFPY--GTTVTYTC 536
Query: 127 ND------RHHLLGEETIVCT----ETGRWSRAPPRCK-----ARCEY----PGEPQNGK 167
N L+GE TI CT E G WS P CK +C + G +GK
Sbjct: 537 NPGPERGVEFSLIGESTIRCTSNDQERGTWSGPAPLCKLSLLAVQCSHVHIANGYKISGK 596
Query: 168 IIPLKFFYDPGDHIQVTCNDGYVKPLDITPTSGPYCQSDGTWSLDIPHCTNYT 220
P +FY+ D + C G+ + +S C++D TW +IP C T
Sbjct: 597 EAP--YFYN--DTVTFKCYSGFT----LKGSSQIRCKADNTWDPEIPVCEKET 641
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 57/134 (42%), Gaps = 15/134 (11%)
Query: 94 VHCPVPALPLNGHLIEDPTGGPYRVGAILQFACNDRHHLLGEETIVCTET----GRWSRA 149
+ C P LNG + T P VG +++++C+ L+GE++++C G W +
Sbjct: 1 ISCGSPPPILNGRISYYST--PIAVGTVIRYSCSGTFRLIGEKSLLCITKDKVDGTWDKP 58
Query: 150 PPRCKARCEYPGEPQ----NGKIIPLKFFYDPGDHIQVTCNDGYVKPLDITPTSGPYCQS 205
P+C+ +Y P+ G I Y GD + C + + +CQ+
Sbjct: 59 APKCEYFNKYSSCPEPIVPGGYKIRGSTPYRHGDSVTFACKTNF----SMNGNKSVWCQA 114
Query: 206 DGTWS-LDIPHCTN 218
+ W +P C +
Sbjct: 115 NNMWGPTRLPTCVS 128
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 43/108 (39%), Gaps = 13/108 (12%)
Query: 49 IFQCSWGYQLKGPPDIVCQKNGSWSGAIPECNAXXXXXXXXXXNPVHCPVPALPLNGHLI 108
++ C GY L G ++C G+WS P C V+C PA ++G
Sbjct: 857 LYSCDQGYLLVGEALLLCTHEGTWSQPAPHCKE------------VNCSSPA-DMDGIQK 903
Query: 109 EDPTGGPYRVGAILQFACNDRHHLLGEETIVCTETGRWSRAPPRCKAR 156
Y+ GA++ C D + L G C +W+ C++R
Sbjct: 904 GLEPRKMYQYGAVVTLECEDGYMLEGSPQSQCQSDHQWNPPLAVCRSR 951
Score = 35.0 bits (79), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Query: 10 QGQWSGEVPTCQQIICPKIVVENPYLTLVEQNNTYRGHAI--FQCSWGYQLKGPPDIVCQ 67
+G WS P C+++ C + +E Y+ A+ +C GY L+G P CQ
Sbjct: 877 EGTWSQPAPHCKEVNCSSPADMDGIQKGLEPRKMYQYGAVVTLECEDGYMLEGSPQSQCQ 936
Query: 68 KNGSWSGAIPECNA 81
+ W+ + C +
Sbjct: 937 SDHQWNPPLAVCRS 950
>pdb|2Q7Z|A Chain A, Solution Structure Of The 30 Scr Domains Of Human Complement
Receptor 1
Length = 1931
Score = 73.6 bits (179), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 66/232 (28%), Positives = 95/232 (40%), Gaps = 30/232 (12%)
Query: 2 THPVFRVSQGQWSGEVPTCQQIICPK--IVVENPYLTLVEQNNTYRGHAIFQCS------ 53
+H V + W+ VP C+QI CP ++ + + Y + C
Sbjct: 1710 SHCVLAGMKALWNSSVPVCEQIFCPNPPAILNGRHTGTPFGDIPYGKEISYACDTHPDRG 1769
Query: 54 WGYQLKGPPDIVC----QKNGSWSGAIPECNAXXXXXXXXXXNPVHCPVPALPLNGHLIE 109
+ L G I C Q NG WS P C P CP P NGH I
Sbjct: 1770 MTFNLIGESSIRCTSDPQGNGVWSSPAPRCELSV---------PAACPHPPKIQNGHYIG 1820
Query: 110 DPTGGPYRVGAILQFACNDRHHLLGEETIVCTETGRWSRAPPRCK-ARCEYPGEPQNG-- 166
Y G + + C+ + L+G+ I CT+ G WS+ CK C +P NG
Sbjct: 1821 GHVS-LYLPGMTISYICDPGYLLVGKGFIFCTDQGIWSQLDHYCKEVNCSFPLF-MNGIS 1878
Query: 167 KIIPLKFFYDPGDHIQVTCNDGYVKPLDITPTSGPYCQSDGTWSLDIPHCTN 218
K + +K Y GD++ + C DGY L+ +P S CQ+D W + CT+
Sbjct: 1879 KELEMKKVYHYGDYVTLKCEDGYT--LEGSPWS--QCQADDRWDPPLAKCTS 1926
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 91/226 (40%), Gaps = 30/226 (13%)
Query: 5 VFRVSQGQWSGEVPTCQQIIC--PKIVVENPYLTLVEQNNTYRGHAIFQCSWG------Y 56
+ + WS + P CQ+I C P + +++ +N Y ++C+ G +
Sbjct: 1005 ILSGNTAHWSTKPPICQRIPCGLPPTIANGDFISTNRENFHYGSVVTYRCNLGSRGRKVF 1064
Query: 57 QLKGPPDIVCQKN----GSWSGAIPECNAXXXXXXXXXXNPVHCPVPALPLNGHLIEDPT 112
+L G P I C N G WSG P+C P C P + NG L+ D
Sbjct: 1065 ELVGEPSIYCTSNDDQVGIWSGPAPQCII-----------PNKCTPPNVE-NGILVSD-N 1111
Query: 113 GGPYRVGAILQFACNDRHHLLGEETIVCTETGRWSRAPPRCKARCEYPGEPQNGKIIPL- 171
+ + +++F C + G + C +W P C C+ P E +G+ P
Sbjct: 1112 RSLFSLNEVVEFRCQPGFVMKGPRRVKCQALNKWEPELPSCSRVCQPPPEILHGEHTPSH 1171
Query: 172 KFFYDPGDHIQVTCNDGYVKPLDITPTSGPYCQSDGTWSLDIPHCT 217
+ + PG + +C GY D+ + +C G WS + P C
Sbjct: 1172 QDNFSPGQEVFYSCEPGY----DLRGAASLHCTPQGDWSPEAPRCA 1213
Score = 61.6 bits (148), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 53/225 (23%), Positives = 87/225 (38%), Gaps = 30/225 (13%)
Query: 5 VFRVSQGQWSGEVPTCQQIIC--PKIVVENPYLTLVEQNNTYRGHAIFQCSWG------Y 56
+ + WS + P CQ+I C P + +++ +N Y ++C+ G +
Sbjct: 555 ILSGNAAHWSTKPPICQRIPCGLPPTIANGDFISTNRENFHYGSVVTYRCNPGSGGRKVF 614
Query: 57 QLKGPPDIVCQKN----GSWSGAIPECNAXXXXXXXXXXNPVHCPVPALPLNGHLIEDPT 112
+L G P I C N G WSG P+C P C P + NG L+ D
Sbjct: 615 ELVGEPSIYCTSNDDQVGIWSGPAPQCII-----------PNKCTPPNVE-NGILVSD-N 661
Query: 113 GGPYRVGAILQFACNDRHHLLGEETIVCTETGRWSRAPPRCKARCEYPGEPQNGKIIPL- 171
+ + +++F C + G + C +W P C C+ P + + +
Sbjct: 662 RSLFSLNEVVEFRCQPGFVMKGPRRVKCQALNKWEPELPSCSRVCQPPPDVLHAERTQRD 721
Query: 172 KFFYDPGDHIQVTCNDGYVKPLDITPTSGPYCQSDGTWSLDIPHC 216
K + PG + +C GY D+ + C G WS P C
Sbjct: 722 KDNFSPGQEVFYSCEPGY----DLRGAASMRCTPQGDWSPAAPTC 762
Score = 60.5 bits (145), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 83/217 (38%), Gaps = 30/217 (13%)
Query: 13 WSGEVPTCQQIIC--PKIVVENPYLTLVEQNNTYRGHAIFQCSWG------YQLKGPPDI 64
W E P C +I C P + +++ +N Y ++C+ G ++L G P I
Sbjct: 113 WDNETPICDRIPCGLPPTITNGDFISTNRENFHYGSVVTYRCNPGSGGRKVFELVGEPSI 172
Query: 65 VCQKN----GSWSGAIPECNAXXXXXXXXXXNPVHCPVPALPLNGHLIEDPTGGPYRVGA 120
C N G WSG P+C P C P + NG L+ D + +
Sbjct: 173 YCTSNDDQVGIWSGPAPQCII-----------PNKCTPPNVE-NGILVSD-NRSLFSLNE 219
Query: 121 ILQFACNDRHHLLGEETIVCTETGRWSRAPPRCKARCEYPGEPQNGKIIPL-KFFYDPGD 179
+++F C + G + C +W P C C+ P + + + K + PG
Sbjct: 220 VVEFRCQPGFVMKGPRRVKCQALNKWEPELPSCSRVCQPPPDVLHAERTQRDKDNFSPGQ 279
Query: 180 HIQVTCNDGYVKPLDITPTSGPYCQSDGTWSLDIPHC 216
+ +C GY D+ + C G WS P C
Sbjct: 280 EVFYSCEPGY----DLRGAASMRCTPQGDWSPAAPTC 312
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 60/206 (29%), Positives = 84/206 (40%), Gaps = 36/206 (17%)
Query: 10 QGQWSGEVPTCQQIICPKIVVENPYLTLVEQNNTYRGHAI-FQCSWGYQLKGPPDIVCQK 68
QG WS E P C C + + P+ ++ N G + F C G++LKG C
Sbjct: 1202 QGDWSPEAPRCAVKSCDDFLGQLPHGRVLFPLNLQLGAKVSFVCDEGFRLKGSSVSHCVL 1261
Query: 69 NGS---WSGAIPECNAXXXXXXXXXXNPVHCPVPALPLNGHLIEDPTGG-PYRVGAILQF 124
G W+ ++P C + CP P LNG P+G PY G + +
Sbjct: 1262 VGMRSLWNNSVPVCEH------------IFCPNPPAILNGRHTGTPSGDIPY--GKEISY 1307
Query: 125 ACN---DR---HHLLGEETIVCTE----TGRWSRAPPRCK-----ARCEYPGE-PQNGKI 168
C+ DR +L+GE TI CT G WS PRC+ C+ P + P
Sbjct: 1308 TCDPHPDRGMTFNLIGESTIRCTSDPHGNGVWSSPAPRCELSVRAGHCKTPEQFPFASPT 1367
Query: 169 IPLKFFYDP-GDHIQVTCNDGYVKPL 193
IP+ F P G + C GY +
Sbjct: 1368 IPINDFEFPVGTSLNYECRPGYFGKM 1393
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/218 (22%), Positives = 82/218 (37%), Gaps = 30/218 (13%)
Query: 13 WSGEVPTCQQIIC-PKIVVENPYLTLVEQNNTYRGHAI-FQCSWG------YQLKGPPDI 64
W + P C+ I C P + N + + + G + +QC G ++L G I
Sbjct: 1466 WDKKAPICEIISCEPPPTISNGDFYSNNRTSFHNGTVVTYQCHTGPDGEQLFELVGERSI 1525
Query: 65 VCQKN----GSWSGAIPECNAXXXXXXXXXXNPVHCPVPALPLNGHLIEDPTGGPYRVGA 120
C G WS P C + N + +P N + +
Sbjct: 1526 YCTSKDDQVGVWSSPPPRCISTNKCTAPEVENAIR-----VPGNRSF--------FSLTE 1572
Query: 121 ILQFACNDRHHLLGEETIVCTETGRWSRAPPRCKARCEYPGEPQNGK-IIPLKFFYDPGD 179
I++F C ++G T+ C GRW P C C+ P E +G+ + + + PG
Sbjct: 1573 IIRFRCQPGFVMVGSHTVQCQTNGRWGPKLPHCSRVCQPPPEILHGEHTLSHQDNFSPGQ 1632
Query: 180 HIQVTCNDGYVKPLDITPTSGPYCQSDGTWSLDIPHCT 217
+ +C Y D+ + +C G WS + P CT
Sbjct: 1633 EVFYSCEPSY----DLRGAASLHCTPQGDWSPEAPRCT 1666
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 86/215 (40%), Gaps = 30/215 (13%)
Query: 11 GQWSGEVPTCQQII---CPKIVVENPYLTLVEQNNTYRGHAI-FQCSWGYQLKGPPDIVC 66
G WSG P C II C VEN L ++ + F+C G+ +KGP + C
Sbjct: 182 GIWSGPAPQC--IIPNKCTPPNVENGILVSDNRSLFSLNEVVEFRCQPGFVMKGPRRVKC 239
Query: 67 QKNGSWSGAIPECNAXXXXXXXXXXNPVHCPVPALPLNGHLIEDPTGGPYRVGAILQFAC 126
Q W +P C+ C P L+ + + G + ++C
Sbjct: 240 QALNKWEPELPSCSRV-------------CQPPPDVLHAERTQRDKDN-FSPGQEVFYSC 285
Query: 127 NDRHHLLGEETIVCTETGRWSRAPPRCKARC--EYPGEPQNGKIIPLKFFYDPGDHIQVT 184
+ L G ++ CT G WS A P C+ + ++ G+ NG+++ G +
Sbjct: 286 EPGYDLRGAASMRCTPQGDWSPAAPTCEVKSCDDFMGQLLNGRVL-FPVNLQLGAKVDFV 344
Query: 185 CNDGYVKPLDITPTSGPYCQSDGT---WSLDIPHC 216
C++G+ + +S YC G W+ +P C
Sbjct: 345 CDEGF----QLKGSSASYCVLAGMESLWNSSVPVC 375
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 86/215 (40%), Gaps = 30/215 (13%)
Query: 11 GQWSGEVPTCQQII---CPKIVVENPYLTLVEQNNTYRGHAI-FQCSWGYQLKGPPDIVC 66
G WSG P C II C VEN L ++ + F+C G+ +KGP + C
Sbjct: 632 GIWSGPAPQC--IIPNKCTPPNVENGILVSDNRSLFSLNEVVEFRCQPGFVMKGPRRVKC 689
Query: 67 QKNGSWSGAIPECNAXXXXXXXXXXNPVHCPVPALPLNGHLIEDPTGGPYRVGAILQFAC 126
Q W +P C+ C P L+ + + G + ++C
Sbjct: 690 QALNKWEPELPSCSRV-------------CQPPPDVLHAERTQRDKDN-FSPGQEVFYSC 735
Query: 127 NDRHHLLGEETIVCTETGRWSRAPPRCKARC--EYPGEPQNGKIIPLKFFYDPGDHIQVT 184
+ L G ++ CT G WS A P C+ + ++ G+ NG+++ G +
Sbjct: 736 EPGYDLRGAASMRCTPQGDWSPAAPTCEVKSCDDFMGQLLNGRVL-FPVNLQLGAKVDFV 794
Query: 185 CNDGYVKPLDITPTSGPYCQSDGT---WSLDIPHC 216
C++G+ + +S YC G W+ +P C
Sbjct: 795 CDEGF----QLKGSSASYCVLAGMESLWNSSVPVC 825
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 84/229 (36%), Gaps = 30/229 (13%)
Query: 2 THPVFRVSQGQWSGEVPTCQQIICPKIVVENPYLTLVEQNNTYRGHAIF-QCSWGYQLKG 60
+H V + G+W ++P C ++ P + + TL Q+N G +F C Y L+G
Sbjct: 1587 SHTVQCQTNGRWGPKLPHCSRVCQPPPEILHGEHTLSHQDNFSPGQEVFYSCEPSYDLRG 1646
Query: 61 PPDIVCQKNGSWSGAIPECNAXXXXXXXXXXNPVHCPVPALPLNGHLIEDPTGGPYRVGA 120
+ C G WS P C H V LPLN ++GA
Sbjct: 1647 AASLHCTPQGDWSPEAPRCTVKSCDDFLGQL--PHGRV-LLPLN-----------LQLGA 1692
Query: 121 ILQFACNDRHHLLGEETIVCTETGR---WSRAPPRC-KARCEYPGEPQNGKIIPLKFFYD 176
+ F C++ L G C G W+ + P C + C P NG+ F
Sbjct: 1693 KVSFVCDEGFRLKGRSASHCVLAGMKALWNSSVPVCEQIFCPNPPAILNGRHTGTPFGDI 1752
Query: 177 P-GDHIQVTCND--------GYVKPLDITPTSGPYCQSDGTWSLDIPHC 216
P G I C+ + I TS P Q +G WS P C
Sbjct: 1753 PYGKEISYACDTHPDRGMTFNLIGESSIRCTSDP--QGNGVWSSPAPRC 1799
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 76/186 (40%), Gaps = 25/186 (13%)
Query: 11 GQWSGEVPTCQQII---CPKIVVENPYLTLVEQNNTYRGHAI-FQCSWGYQLKGPPDIVC 66
G WSG P C II C VEN L ++ + F+C G+ +KGP + C
Sbjct: 1082 GIWSGPAPQC--IIPNKCTPPNVENGILVSDNRSLFSLNEVVEFRCQPGFVMKGPRRVKC 1139
Query: 67 QKNGSWSGAIPECNAXXXXXXXXXXNPVHCPVPALPLNGHLIEDPTGGPYRVGAILQFAC 126
Q W +P C+ C P L+G + G + ++C
Sbjct: 1140 QALNKWEPELPSCSRV-------------CQPPPEILHGEHTPSHQDN-FSPGQEVFYSC 1185
Query: 127 NDRHHLLGEETIVCTETGRWSRAPPRCKARC--EYPGEPQNGKII-PLKFFYDPGDHIQV 183
+ L G ++ CT G WS PRC + ++ G+ +G+++ PL G +
Sbjct: 1186 EPGYDLRGAASLHCTPQGDWSPEAPRCAVKSCDDFLGQLPHGRVLFPLNLQL--GAKVSF 1243
Query: 184 TCNDGY 189
C++G+
Sbjct: 1244 VCDEGF 1249
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 64/161 (39%), Gaps = 33/161 (20%)
Query: 10 QGQWSGEVPTCQQIICPKIVVENPYLTLVEQNNTYRGHAI-FQCSWGYQLKGPPDIVCQK 68
QG WS PTC+ C + + ++ N G + F C G+QLKG C
Sbjct: 302 QGDWSPAAPTCEVKSCDDFMGQLLNGRVLFPVNLQLGAKVDFVCDEGFQLKGSSASYCVL 361
Query: 69 NGS---WSGAIPECNAXXXXXXXXXXNPVHCPVPALPLNGHLIEDPTGGPYRV---GAIL 122
G W+ ++P C + CP P + NG TG P V G +
Sbjct: 362 AGMESLWNSSVPVCEQ------------IFCPSPPVIPNGRH----TGKPLEVFPFGKAV 405
Query: 123 QFACN---DR---HHLLGEETIVCTE----TGRWSRAPPRC 153
+ C+ DR L+GE TI CT G WS PRC
Sbjct: 406 NYTCDPHPDRGTSFDLIGESTIRCTSDPQGNGVWSSPAPRC 446
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 64/161 (39%), Gaps = 33/161 (20%)
Query: 10 QGQWSGEVPTCQQIICPKIVVENPYLTLVEQNNTYRGHAI-FQCSWGYQLKGPPDIVCQK 68
QG WS PTC+ C + + ++ N G + F C G+QLKG C
Sbjct: 752 QGDWSPAAPTCEVKSCDDFMGQLLNGRVLFPVNLQLGAKVDFVCDEGFQLKGSSASYCVL 811
Query: 69 NGS---WSGAIPECNAXXXXXXXXXXNPVHCPVPALPLNGHLIEDPTGGPYRV---GAIL 122
G W+ ++P C + CP P + NG TG P V G +
Sbjct: 812 AGMESLWNSSVPVCEQ------------IFCPSPPVIPNGRH----TGKPLEVFPFGKAV 855
Query: 123 QFACN---DR---HHLLGEETIVCTE----TGRWSRAPPRC 153
+ C+ DR L+GE TI CT G WS PRC
Sbjct: 856 NYTCDPHPDRGTSFDLIGESTIRCTSDPQGNGVWSSPAPRC 896
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/172 (22%), Positives = 70/172 (40%), Gaps = 24/172 (13%)
Query: 50 FQCSWGYQLKGPPDIVCQKNGSWSGAIPECNAXXXXXXXXXXNPVHCPVPALPLNGHLIE 109
F+C G+ + G + CQ NG W +P C+ V P P + H +
Sbjct: 1576 FRCQPGFVMVGSHTVQCQTNGRWGPKLPHCSR------------VCQPPPEILHGEHTLS 1623
Query: 110 DPTGGPYRVGAILQFACNDRHHLLGEETIVCTETGRWSRAPPRCKARC--EYPGEPQNGK 167
+ G + ++C + L G ++ CT G WS PRC + ++ G+ +G+
Sbjct: 1624 HQDN--FSPGQEVFYSCEPSYDLRGAASLHCTPQGDWSPEAPRCTVKSCDDFLGQLPHGR 1681
Query: 168 IIPLKFFYDPGDHIQVTCNDGYVKPLDITPTSGPYCQSDGT---WSLDIPHC 216
++ L G + C++G+ + S +C G W+ +P C
Sbjct: 1682 VL-LPLNLQLGAKVSFVCDEGF----RLKGRSASHCVLAGMKALWNSSVPVC 1728
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 71/182 (39%), Gaps = 35/182 (19%)
Query: 50 FQCSWGYQLKGPPDIVCQKNGSWSGAIPECNAXXXXXXXXXXNPVHCPVPALPLNG--HL 107
++C GY + P I+C KN W+GA C C P P+NG H+
Sbjct: 30 YECRPGYSGR-PFSIICLKNSVWTGAKDRCRRKS------------CRNPPDPVNGMVHV 76
Query: 108 IEDPTGGPYRVGAILQFACNDRHHLLGEETIVCTETGR---WSRAPPRC-KARCEYPGEP 163
I+ + G+ ++++C + L+G + C +G W P C + C P
Sbjct: 77 IKG-----IQFGSQIKYSCTKGYRLIGSSSATCIISGDTVIWDNETPICDRIPCGLPPTI 131
Query: 164 QNGKIIPL---KFFYDPGDHIQVTCN--DGYVKPLDITPTSGPYCQSD----GTWSLDIP 214
NG I F Y G + CN G K ++ YC S+ G WS P
Sbjct: 132 TNGDFISTNRENFHY--GSVVTYRCNPGSGGRKVFELVGEPSIYCTSNDDQVGIWSGPAP 189
Query: 215 HC 216
C
Sbjct: 190 QC 191
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 63/171 (36%), Gaps = 34/171 (19%)
Query: 61 PPDIVCQKNGSWSGAIPECNAXXXXXXXXXXNPVHCPVPALPLNG--HLIEDPTGGPYRV 118
P I C N WS C C P P+NG H+I D +V
Sbjct: 490 PFSITCLDNLVWSSPKDVCKRKS------------CKTPPDPVNGMVHVITD-----IQV 532
Query: 119 GAILQFACNDRHHLLGEETIVCTETGR---WSRAPPRC-KARCEYPGEPQNGKIIPL--- 171
G+ + ++C H L+G + C +G WS PP C + C P NG I
Sbjct: 533 GSRINYSCTTGHRLIGHSSAECILSGNAAHWSTKPPICQRIPCGLPPTIANGDFISTNRE 592
Query: 172 KFFYDPGDHIQVTCN--DGYVKPLDITPTSGPYCQSD----GTWSLDIPHC 216
F Y G + CN G K ++ YC S+ G WS P C
Sbjct: 593 NFHY--GSVVTYRCNPGSGGRKVFELVGEPSIYCTSNDDQVGIWSGPAPQC 641
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 63/171 (36%), Gaps = 34/171 (19%)
Query: 61 PPDIVCQKNGSWSGAIPECNAXXXXXXXXXXNPVHCPVPALPLNG--HLIEDPTGGPYRV 118
P I C N WS C C P P+NG H+I D +V
Sbjct: 940 PFSITCLDNLVWSSPKDVCKRKS------------CKTPPDPVNGMVHVITD-----IQV 982
Query: 119 GAILQFACNDRHHLLGE---ETIVCTETGRWSRAPPRC-KARCEYPGEPQNGKIIPL--- 171
G+ + ++C H L+G E I+ T WS PP C + C P NG I
Sbjct: 983 GSRINYSCTTGHRLIGHSSAECILSGNTAHWSTKPPICQRIPCGLPPTIANGDFISTNRE 1042
Query: 172 KFFYDPGDHIQVTCNDGY--VKPLDITPTSGPYCQSD----GTWSLDIPHC 216
F Y G + CN G K ++ YC S+ G WS P C
Sbjct: 1043 NFHY--GSVVTYRCNLGSRGRKVFELVGEPSIYCTSNDDQVGIWSGPAPQC 1091
Score = 43.5 bits (101), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 51/230 (22%), Positives = 82/230 (35%), Gaps = 26/230 (11%)
Query: 1 MTHPVFRVSQGQWSGEVPTCQQIICPK--IVVENPYLTLVEQNNTYRGHAIFQCS----- 53
++H V + W+ VP C+ I CP ++ + + Y + C
Sbjct: 1256 VSHCVLVGMRSLWNNSVPVCEHIFCPNPPAILNGRHTGTPSGDIPYGKEISYTCDPHPDR 1315
Query: 54 -WGYQLKGPPDIVCQK----NGSWSGAIPECNAXXXXXXXXXXNPVHCPVPALPLNGHLI 108
+ L G I C NG WS P C P +P+N
Sbjct: 1316 GMTFNLIGESTIRCTSDPHGNGVWSSPAPRCELSVRAGHCKTPEQFPFASPTIPINDF-- 1373
Query: 109 EDPTGGPYRVGAILQFACNDRHHLLGEE-TIVCTETGRWSRAPPRCKAR-CEYPGEPQNG 166
+ VG L + C R G+ +I C E WS C+ + C P EP NG
Sbjct: 1374 ------EFPVGTSLNYEC--RPGYFGKMFSISCLENLVWSSVEDNCRRKSCGPPPEPFNG 1425
Query: 167 KIIPLKFFYDPGDHIQVTCNDGYVKPLDITPTSGPYCQSDGTWSLDIPHC 216
++ + G + +CN+G+ + + T+ ++ TW P C
Sbjct: 1426 -MVHINTDTQFGSTVNYSCNEGF-RLIGSPSTTCLVSGNNVTWDKKAPIC 1473
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 71/198 (35%), Gaps = 26/198 (13%)
Query: 5 VFRVSQGQWSGEVPTCQQIICPK-IVVENPYLTLVEQNNTYRGHAI-FQCS------WGY 56
V + W+ VP C+QI CP V+ N T G A+ + C +
Sbjct: 360 VLAGMESLWNSSVPVCEQIFCPSPPVIPNGRHTGKPLEVFPFGKAVNYTCDPHPDRGTSF 419
Query: 57 QLKGPPDIVC----QKNGSWSGAIPECNAXXXXXXXXXXNPVHCPVPALPLNGHLIEDPT 112
L G I C Q NG WS P C HC P L L
Sbjct: 420 DLIGESTIRCTSDPQGNGVWSSPAPRCGILG-----------HCQAPDHFLFAKLKTQTN 468
Query: 113 GGPYRVGAILQFACNDRHHLLGEETIVCTETGRWSRAPPRCKAR-CEYPGEPQNGKIIPL 171
+ +G L++ C ++ +I C + WS CK + C+ P +P NG + +
Sbjct: 469 ASDFPIGTSLKYECRPEYYGR-PFSITCLDNLVWSSPKDVCKRKSCKTPPDPVNGMVHVI 527
Query: 172 KFFYDPGDHIQVTCNDGY 189
G I +C G+
Sbjct: 528 TDI-QVGSRINYSCTTGH 544
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 71/198 (35%), Gaps = 26/198 (13%)
Query: 5 VFRVSQGQWSGEVPTCQQIICPK-IVVENPYLTLVEQNNTYRGHAI-FQCS------WGY 56
V + W+ VP C+QI CP V+ N T G A+ + C +
Sbjct: 810 VLAGMESLWNSSVPVCEQIFCPSPPVIPNGRHTGKPLEVFPFGKAVNYTCDPHPDRGTSF 869
Query: 57 QLKGPPDIVC----QKNGSWSGAIPECNAXXXXXXXXXXNPVHCPVPALPLNGHLIEDPT 112
L G I C Q NG WS P C HC P L L
Sbjct: 870 DLIGESTIRCTSDPQGNGVWSSPAPRCGILG-----------HCQAPDHFLFAKLKTQTN 918
Query: 113 GGPYRVGAILQFACNDRHHLLGEETIVCTETGRWSRAPPRCKAR-CEYPGEPQNGKIIPL 171
+ +G L++ C ++ +I C + WS CK + C+ P +P NG + +
Sbjct: 919 ASDFPIGTSLKYECRPEYYGR-PFSITCLDNLVWSSPKDVCKRKSCKTPPDPVNGMVHVI 977
Query: 172 KFFYDPGDHIQVTCNDGY 189
G I +C G+
Sbjct: 978 TDI-QVGSRINYSCTTGH 994
Score = 34.3 bits (77), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 51/157 (32%), Gaps = 28/157 (17%)
Query: 10 QGQWSGEVPTCQQIICPKIVVENPYLTLVEQNNTYRGHAI----------FQCSWGYQLK 59
G WS P C+ + P P + QN Y G + + C GY L
Sbjct: 1789 NGVWSSPAPRCELSV-PAACPHPPKI----QNGHYIGGHVSLYLPGMTISYICDPGYLLV 1843
Query: 60 GPPDIVCQKNGSWSGAIPECNAXXXXXXXXXXNPVHCPVPALPLNGHLIEDPTGGPYRVG 119
G I C G WS C V+C P L +NG E Y G
Sbjct: 1844 GKGFIFCTDQGIWSQLDHYCKE------------VNCSFP-LFMNGISKELEMKKVYHYG 1890
Query: 120 AILQFACNDRHHLLGEETIVCTETGRWSRAPPRCKAR 156
+ C D + L G C RW +C +R
Sbjct: 1891 DYVTLKCEDGYTLEGSPWSQCQADDRWDPPLAKCTSR 1927
>pdb|1C1Z|A Chain A, Crystal Structure Of Human Beta-2-Glycoprotein-I
(Apolipoprotein-H)
Length = 326
Score = 67.4 bits (163), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 70/158 (44%), Gaps = 20/158 (12%)
Query: 8 VSQGQWSGEVPTCQQIICPK-----IVVENPYLTLVEQNNTYRGHAIFQCSWGYQLKGPP 62
+G+WS E+P C IICP Y N+ YR A+F+C + + G
Sbjct: 106 TEEGKWSPELPVCAPIICPPPSIPTFATLRVYKPSAGNNSLYRDTAVFECLPQHAMFGND 165
Query: 63 DIVCQKNGSWSGAIPECNAXXXXXXXXXXNPVHCPVPALPLNGHLIEDPTGGPYRVGAIL 122
I C +G+W+ +PEC V CP P+ P NG + P
Sbjct: 166 TITCTTHGNWT-KLPECRE------------VKCPFPSRPDNG-FVNYPAKPTLYYKDKA 211
Query: 123 QFACNDRHHLLGEETIVCTETGRWSRAPPRCKARCEYP 160
F C+D + L G E I CT+ G WS A P CKA C+ P
Sbjct: 212 TFGCHDGYSLDGPEEIECTKLGNWS-AMPSCKASCKLP 248
Score = 57.4 bits (137), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 60/216 (27%), Positives = 82/216 (37%), Gaps = 35/216 (16%)
Query: 11 GQWSGEVPTCQQIICPKI-VVENPYL--TLVEQNNTYRGHAIFQCSWGYQLKGPPDIVCQ 67
G W C +CP ++EN + T E NT F C+ G+ L G C
Sbjct: 51 GLWPINTLKCTPRVCPFAGILENGAVRYTTFEYPNTIS----FSCNTGFYLNGADSAKCT 106
Query: 68 KNGSWSGAIPECNAXXXXXXXXXXNPVHCPVPALPLNGHLIEDPTGGP---YRVGAILQF 124
+ G WS +P C + P+ G YR A+ F
Sbjct: 107 EEGKWSPELPVCAPIICPPPSIPT-----------FATLRVYKPSAGNNSLYRDTAV--F 153
Query: 125 ACNDRHHLLGEETIVCTETGRWSRAPPRCKARCEYPGEPQNGKI-IPLKFFYDPGDHIQV 183
C +H + G +TI CT G W++ P + +C +P P NG + P K D
Sbjct: 154 ECLPQHAMFGNDTITCTTHGNWTKLPECREVKCPFPSRPDNGFVNYPAKPTLYYKDKATF 213
Query: 184 TCNDGYVKPLDITPTSGP---YCQSDGTWSLDIPHC 216
C+DGY LD GP C G WS +P C
Sbjct: 214 GCHDGY--SLD-----GPEEIECTKLGNWSA-MPSC 241
Score = 34.7 bits (78), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 157 CEYPGEPQNGKIIPLKFFYDPGDHIQVTCNDGYVKPLDITPTSGPYCQSDGTWSLDIPHC 216
C P + ++PLK FY+PG+ I +C GYV + C G W ++ C
Sbjct: 4 CPKPDDLPFSTVVPLKTFYEPGEEITYSCKPGYVSRGGMRKF---ICPLTGLWPINTLKC 60
Query: 217 T 217
T
Sbjct: 61 T 61
>pdb|1QUB|A Chain A, Crystal Structure Of The Glycosylated Five-domain Human
Beta2- Glycoprotein I Purified From Blood Plasma
Length = 319
Score = 67.4 bits (163), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 52/158 (32%), Positives = 70/158 (44%), Gaps = 20/158 (12%)
Query: 8 VSQGQWSGEVPTCQQIICPK-----IVVENPYLTLVEQNNTYRGHAIFQCSWGYQLKGPP 62
+G+WS E+P C IICP Y N+ YR A+F+C + + G
Sbjct: 106 TEEGKWSPELPVCAPIICPPPSIPTFATLRVYKPSAGNNSLYRDTAVFECLPQHAMFGND 165
Query: 63 DIVCQKNGSWSGAIPECNAXXXXXXXXXXNPVHCPVPALPLNGHLIEDPTGGPYRVGAIL 122
I C +G+W+ +PEC V CP P+ P NG + P
Sbjct: 166 TITCTTHGNWT-KLPECRE------------VKCPFPSRPDNG-FVNYPAKPTLYYKDKA 211
Query: 123 QFACNDRHHLLGEETIVCTETGRWSRAPPRCKARCEYP 160
F C+D + L G E I CT+ G WS A P CKA C+ P
Sbjct: 212 TFGCHDGYSLDGPEEIECTKLGNWS-AMPSCKASCKVP 248
Score = 57.8 bits (138), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 60/216 (27%), Positives = 82/216 (37%), Gaps = 35/216 (16%)
Query: 11 GQWSGEVPTCQQIICPKI-VVENPYL--TLVEQNNTYRGHAIFQCSWGYQLKGPPDIVCQ 67
G W C +CP ++EN + T E NT F C+ G+ L G C
Sbjct: 51 GLWPINTLKCTPRVCPFAGILENGAVRYTTFEYPNTIS----FSCNTGFYLNGADSAKCT 106
Query: 68 KNGSWSGAIPECNAXXXXXXXXXXNPVHCPVPALPLNGHLIEDPTGGP---YRVGAILQF 124
+ G WS +P C + P+ G YR A+ F
Sbjct: 107 EEGKWSPELPVCAPIICPPPSIPT-----------FATLRVYKPSAGNNSLYRDTAV--F 153
Query: 125 ACNDRHHLLGEETIVCTETGRWSRAPPRCKARCEYPGEPQNGKI-IPLKFFYDPGDHIQV 183
C +H + G +TI CT G W++ P + +C +P P NG + P K D
Sbjct: 154 ECLPQHAMFGNDTITCTTHGNWTKLPECREVKCPFPSRPDNGFVNYPAKPTLYYKDKATF 213
Query: 184 TCNDGYVKPLDITPTSGP---YCQSDGTWSLDIPHC 216
C+DGY LD GP C G WS +P C
Sbjct: 214 GCHDGY--SLD-----GPEEIECTKLGNWSA-MPSC 241
Score = 34.7 bits (78), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 157 CEYPGEPQNGKIIPLKFFYDPGDHIQVTCNDGYVKPLDITPTSGPYCQSDGTWSLDIPHC 216
C P + ++PLK FY+PG+ I +C GYV + C G W ++ C
Sbjct: 4 CPKPDDLPFSTVVPLKTFYEPGEEITYSCKPGYVSRGGMRKF---ICPLTGLWPINTLKC 60
Query: 217 T 217
T
Sbjct: 61 T 61
>pdb|2WII|C Chain C, Complement C3b In Complex With Factor H Domains 1-4
Length = 277
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 63/149 (42%), Gaps = 16/149 (10%)
Query: 44 YRGHAIFQCSWGYQLKGPPDIVCQKNGSWSGAIPECNAXXXXXXXXXXNPVHCPVPALPL 103
Y A++ C+ GYQL G + W+ IP C V C P
Sbjct: 93 YGVKAVYTCNEGYQLLGEINYRECDTDGWTNDIPICEV------------VKCLPVTAPE 140
Query: 104 NGHLIEDPT--GGPYRVGAILQFACNDRHHLLGEETIVCTETGRWSRAPPRC-KARCEYP 160
NG ++ Y G ++F CN + + G+E + C++ G WS+ P+C + C+ P
Sbjct: 141 NGKIVSSAMEPDREYHFGQAVRFVCNSGYKIEGDEEMHCSDDGFWSKEKPKCVEISCKSP 200
Query: 161 GEPQNGKIIPLKFFYDPGDHIQVTCNDGY 189
+ NG I K Y + Q CN GY
Sbjct: 201 -DVINGSPISQKIIYKENERFQYKCNMGY 228
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 69/179 (38%), Gaps = 21/179 (11%)
Query: 47 HAIFQCSWGYQLKGPPDIVCQKNGSWSGAIPECNAXXXXXXXXXXNPVHCPVPALPLNGH 106
AI++C GY+ G +VC+K G W N +P P L G
Sbjct: 34 QAIYKCRPGYRSLGNIIMVCRK-GEWVAL----NPLRKCQKRPCGHPGDTPFGTFTLTG- 87
Query: 107 LIEDPTGGPYRVGAILQFACNDRHHLLGEETIVCTETGRWSRAPPRCK-ARCEYPGEPQN 165
G + G + CN+ + LLGE +T W+ P C+ +C P+N
Sbjct: 88 ------GNVFEYGVKAVYTCNEGYQLLGEINYRECDTDGWTNDIPICEVVKCLPVTAPEN 141
Query: 166 GKIIPLKF----FYDPGDHIQVTCNDGYVKPLDITPTSGPYCQSDGTWSLDIPHCTNYT 220
GKI+ Y G ++ CN GY I +C DG WS + P C +
Sbjct: 142 GKIVSSAMEPDREYHFGQAVRFVCNSGY----KIEGDEEMHCSDDGFWSKEKPKCVEIS 196
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 66/149 (44%), Gaps = 21/149 (14%)
Query: 13 WSGEVPTCQQIIC-PKIVVENPYL--TLVEQNNTYR-GHAI-FQCSWGYQLKGPPDIVCQ 67
W+ ++P C+ + C P EN + + +E + Y G A+ F C+ GY+++G ++ C
Sbjct: 121 WTNDIPICEVVKCLPVTAPENGKIVSSAMEPDREYHFGQAVRFVCNSGYKIEGDEEMHCS 180
Query: 68 KNGSWSGAIPECNAXXXXXXXXXXNPVHCPVPALPLNGHLIEDPTGGPYRVGAILQFACN 127
+G WS P+C + C P + +NG I Y+ Q+ CN
Sbjct: 181 DDGFWSKEKPKCVE------------ISCKSPDV-INGSPISQKI--IYKENERFQYKCN 225
Query: 128 DRHHLLGEETIVCTETGRWSRAPPRCKAR 156
+ VCTE+G W P +AR
Sbjct: 226 MGYEYSERGDAVCTESG-WRPLPSCEEAR 253
Score = 32.3 bits (72), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 8/64 (12%)
Query: 11 GQWSGEVPTCQQIIC--PKIVVENPYLTLVEQNNTYRGHAIFQ--CSWGYQLKGPPDIVC 66
G WS E P C +I C P ++ +P + Q Y+ + FQ C+ GY+ D VC
Sbjct: 183 GFWSKEKPKCVEISCKSPDVINGSP----ISQKIIYKENERFQYKCNMGYEYSERGDAVC 238
Query: 67 QKNG 70
++G
Sbjct: 239 TESG 242
>pdb|3GAU|A Chain A, Solution Structure Of Human Complement Factor H In 50 Mm
Nacl Buffer
pdb|3GAV|A Chain A, Solution Structure Of Human Complement Factor H In 137 Mm
Nacl Buffer
pdb|3GAW|A Chain A, Solution Structure Of Human Complement Factor H In 250 Mm
Nacl Buffer
Length = 1213
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 63/149 (42%), Gaps = 16/149 (10%)
Query: 44 YRGHAIFQCSWGYQLKGPPDIVCQKNGSWSGAIPECNAXXXXXXXXXXNPVHCPVPALPL 103
Y A++ C+ GYQL G + W+ IP C V C P
Sbjct: 88 YGVKAVYTCNEGYQLLGEINYRECDTDGWTNDIPICEV------------VKCLPVTAPE 135
Query: 104 NGHLIEDPT--GGPYRVGAILQFACNDRHHLLGEETIVCTETGRWSRAPPRC-KARCEYP 160
NG ++ Y G ++F CN + + G+E + C++ G WS+ P+C + C+ P
Sbjct: 136 NGKIVSSAMEPDREYHFGQAVRFVCNSGYKIEGDEEMHCSDDGFWSKEKPKCVEISCKSP 195
Query: 161 GEPQNGKIIPLKFFYDPGDHIQVTCNDGY 189
+ NG I K Y + Q CN GY
Sbjct: 196 -DVINGSPISQKIIYKENERFQYKCNMGY 223
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 81/182 (44%), Gaps = 22/182 (12%)
Query: 13 WSGEVPTCQQIIC-PKIVVENPYL--TLVEQNNTYR-GHAI-FQCSWGYQLKGPPDIVCQ 67
W+ ++P C+ + C P EN + + +E + Y G A+ F C+ GY+++G ++ C
Sbjct: 116 WTNDIPICEVVKCLPVTAPENGKIVSSAMEPDREYHFGQAVRFVCNSGYKIEGDEEMHCS 175
Query: 68 KNGSWSGAIPECNAXXXXXXXXXXNPVHCPVPALPLNGHLIEDPTGGPYRVGAILQFACN 127
+G WS P+C + C P + +NG I Y+ Q+ CN
Sbjct: 176 DDGFWSKEKPKCVE------------ISCKSPDV-INGSPISQKI--IYKENERFQYKCN 220
Query: 128 DRHHLLGEETIVCTETGRWSRAPPRCKARCEYPGEPQNGKIIPLKFFYDPGDHIQVTCND 187
+ VCTE+G W P + C+ P P NG PL+ + GD I C +
Sbjct: 221 MGYEYSERGDAVCTESG-WRPLPSCEEKSCDNPYIP-NGDYSPLRIKHRTGDEITYQCRN 278
Query: 188 GY 189
G+
Sbjct: 279 GF 280
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 68/175 (38%), Gaps = 21/175 (12%)
Query: 47 HAIFQCSWGYQLKGPPDIVCQKNGSWSGAIPECNAXXXXXXXXXXNPVHCPVPALPLNGH 106
AI++C GY+ G +VC+K G W N +P P L G
Sbjct: 29 QAIYKCRPGYRSLGNVIMVCRK-GEWVAL----NPLRKCQKRPCGHPGDTPFGTFTLTG- 82
Query: 107 LIEDPTGGPYRVGAILQFACNDRHHLLGEETIVCTETGRWSRAPPRCK-ARCEYPGEPQN 165
G + G + CN+ + LLGE +T W+ P C+ +C P+N
Sbjct: 83 ------GNVFEYGVKAVYTCNEGYQLLGEINYRECDTDGWTNDIPICEVVKCLPVTAPEN 136
Query: 166 GKIIPLKF----FYDPGDHIQVTCNDGYVKPLDITPTSGPYCQSDGTWSLDIPHC 216
GKI+ Y G ++ CN GY I +C DG WS + P C
Sbjct: 137 GKIVSSAMEPDREYHFGQAVRFVCNSGY----KIEGDEEMHCSDDGFWSKEKPKC 187
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/178 (21%), Positives = 70/178 (39%), Gaps = 23/178 (12%)
Query: 18 PTCQQIICPKIVVENPYLTLVEQNNTYRG--HAIFQCSWGYQLKGPPDIVCQKNGSWSGA 75
P+C + C + + + E+ + Y+ + C+ Y++ G ++ C N W+G
Sbjct: 964 PSCIKTDCLSLPSFENAIPMGEKKDVYKAGEQVTYTCATYYKMDGASNVTC-INSRWTGR 1022
Query: 76 IPECNAXXXXXXXXXXNPVHCPVPALPLNGHLIEDPTGGPYRVGAILQFACNDRHHLLGE 135
P C C P N +++ Y G +++ C + + G+
Sbjct: 1023 -PTCRD------------TSCVNPPTVQNAYIVSRQMS-KYPSGERVRYQCRSPYEMFGD 1068
Query: 136 ETIVCTETGRWSRAPPRCK---ARCEYPGEPQNGKIIPLKF-FYDPGDHIQVTCNDGY 189
E ++C G W+ PP+CK +C P NG I Y P ++ C + Y
Sbjct: 1069 EEVMCL-NGNWTE-PPQCKDSTGKCGPPPPIDNGDITSFPLSVYAPASSVEYQCQNLY 1124
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 67/162 (41%), Gaps = 29/162 (17%)
Query: 11 GQWSGEVPTCQQIIC--PKIVVENPYLTLVEQNNTYRGHAIFQ--CSWGYQLKGPPDIVC 66
G WS E P C +I C P ++ +P + Q Y+ + FQ C+ GY+ D VC
Sbjct: 178 GFWSKEKPKCVEISCKSPDVINGSP----ISQKIIYKENERFQYKCNMGYEYSERGDAVC 233
Query: 67 QKNGSWSGAIPECNAXXXXXXXXXXNPVHCPVPALPLNGHLIEDPTGGPYRVGAILQFAC 126
++G W +P C C P +P NG P +R G + + C
Sbjct: 234 TESG-WR-PLPSCEEKS------------CDNPYIP-NGDY--SPLRIKHRTGDEITYQC 276
Query: 127 -NDRHHLLGEETIVCTETGRWSRAPPRCKAR-CEYPGEPQNG 166
N + T CT TG W A PRC + C+YP G
Sbjct: 277 RNGFYPATRGNTAKCTSTG-WIPA-PRCTLKPCDYPDIKHGG 316
Score = 34.3 bits (77), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 58/132 (43%), Gaps = 14/132 (10%)
Query: 95 HCPVPALPLNGHLIEDPTGGPYRVGAILQFACNDRHHLLGEETIVCTETGRWSRAPPRCK 154
C +P + + HL+ D Y+VG +L+F+C ++G ++ C G S P CK
Sbjct: 550 ECELPKIDV--HLVPDRKKDQYKVGEVLKFSCKPGFTIVGPNSVQCYHFG-LSPDLPICK 606
Query: 155 AR---CEYPGEPQNGKII-PLKFFYDPGDHIQVTCNDGY-------VKPLDITPTSGPYC 203
+ C P E NG + K Y + ++ CN + ++ +D T+ P C
Sbjct: 607 EQVQSCGPPPELLNGNVKEKTKEEYGHSEVVEYYCNPRFLMKGPNKIQCVDGEWTTLPVC 666
Query: 204 QSDGTWSLDIPH 215
+ + DIP
Sbjct: 667 IVEESTCGDIPE 678
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 48/117 (41%), Gaps = 18/117 (15%)
Query: 37 LVEQNNTYRGHAI---FQCSWGYQLKGPPDIVCQKNGSWSGAIPECNAXXXXXXXXXXNP 93
+ E+ GH+ + C+ + +KGP I C +G W+ +P C
Sbjct: 623 VKEKTKEEYGHSEVVEYYCNPRFLMKGPNKIQCV-DGEWT-TLPVCIVEESTCGD----- 675
Query: 94 VHCPVPALPLNGHLIEDPTGGPYRVGAILQFACNDRHHLLGEETIVCTETGRWSRAP 150
+P L + P PY G ++F C++ ++G +I C G W++ P
Sbjct: 676 ----IPELEHGWAQLSSP---PYYYGDSVEFNCSESFTMIGHRSITCIH-GVWTQLP 724
>pdb|1HAQ|A Chain A, Four Models Of Human Factor H Determined By Solution
Scattering Curve-Fitting And Homology Modelling
Length = 1213
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 63/149 (42%), Gaps = 16/149 (10%)
Query: 44 YRGHAIFQCSWGYQLKGPPDIVCQKNGSWSGAIPECNAXXXXXXXXXXNPVHCPVPALPL 103
Y A++ C+ GYQL G + W+ IP C V C P
Sbjct: 88 YGVKAVYTCNEGYQLLGEINYRECDTDGWTNDIPICEV------------VKCLPVTAPE 135
Query: 104 NGHLIEDPT--GGPYRVGAILQFACNDRHHLLGEETIVCTETGRWSRAPPRC-KARCEYP 160
NG ++ Y G ++F CN + + G+E + C++ G WS+ P+C + C+ P
Sbjct: 136 NGKIVSSAMEPDREYHFGQAVRFVCNSGYKIEGDEEMHCSDDGFWSKEKPKCVEISCKSP 195
Query: 161 GEPQNGKIIPLKFFYDPGDHIQVTCNDGY 189
+ NG I K Y + Q CN GY
Sbjct: 196 -DVINGSPISQKIIYKENERFQYKCNMGY 223
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 81/182 (44%), Gaps = 22/182 (12%)
Query: 13 WSGEVPTCQQIIC-PKIVVENPYL--TLVEQNNTYR-GHAI-FQCSWGYQLKGPPDIVCQ 67
W+ ++P C+ + C P EN + + +E + Y G A+ F C+ GY+++G ++ C
Sbjct: 116 WTNDIPICEVVKCLPVTAPENGKIVSSAMEPDREYHFGQAVRFVCNSGYKIEGDEEMHCS 175
Query: 68 KNGSWSGAIPECNAXXXXXXXXXXNPVHCPVPALPLNGHLIEDPTGGPYRVGAILQFACN 127
+G WS P+C + C P + +NG I Y+ Q+ CN
Sbjct: 176 DDGFWSKEKPKCVE------------ISCKSPDV-INGSPISQKI--IYKENERFQYKCN 220
Query: 128 DRHHLLGEETIVCTETGRWSRAPPRCKARCEYPGEPQNGKIIPLKFFYDPGDHIQVTCND 187
+ VCTE+G W P + C+ P P NG PL+ + GD I C +
Sbjct: 221 MGYEYSERGDAVCTESG-WRPLPSCEEKSCDNPYIP-NGDYSPLRIKHRTGDEITYQCRN 278
Query: 188 GY 189
G+
Sbjct: 279 GF 280
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 68/175 (38%), Gaps = 21/175 (12%)
Query: 47 HAIFQCSWGYQLKGPPDIVCQKNGSWSGAIPECNAXXXXXXXXXXNPVHCPVPALPLNGH 106
AI++C GY+ G +VC+K G W N +P P L G
Sbjct: 29 QAIYKCRPGYRSLGNVIMVCRK-GEWVAL----NPLRKCQKRPCGHPGDTPFGTFTLTG- 82
Query: 107 LIEDPTGGPYRVGAILQFACNDRHHLLGEETIVCTETGRWSRAPPRCK-ARCEYPGEPQN 165
G + G + CN+ + LLGE +T W+ P C+ +C P+N
Sbjct: 83 ------GNVFEYGVKAVYTCNEGYQLLGEINYRECDTDGWTNDIPICEVVKCLPVTAPEN 136
Query: 166 GKIIPLKF----FYDPGDHIQVTCNDGYVKPLDITPTSGPYCQSDGTWSLDIPHC 216
GKI+ Y G ++ CN GY I +C DG WS + P C
Sbjct: 137 GKIVSSAMEPDREYHFGQAVRFVCNSGY----KIEGDEEMHCSDDGFWSKEKPKC 187
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/178 (21%), Positives = 70/178 (39%), Gaps = 23/178 (12%)
Query: 18 PTCQQIICPKIVVENPYLTLVEQNNTYRG--HAIFQCSWGYQLKGPPDIVCQKNGSWSGA 75
P+C + C + + + E+ + Y+ + C+ Y++ G ++ C N W+G
Sbjct: 964 PSCIKTDCLSLPSFENAIPMGEKKDVYKAGEQVTYTCATYYKMDGASNVTC-INSRWTGR 1022
Query: 76 IPECNAXXXXXXXXXXNPVHCPVPALPLNGHLIEDPTGGPYRVGAILQFACNDRHHLLGE 135
P C C P N +++ Y G +++ C + + G+
Sbjct: 1023 -PTCRD------------TSCVNPPTVQNAYIVSRQMS-KYPSGERVRYQCRSPYEMFGD 1068
Query: 136 ETIVCTETGRWSRAPPRCK---ARCEYPGEPQNGKIIPLKF-FYDPGDHIQVTCNDGY 189
E ++C G W+ PP+CK +C P NG I Y P ++ C + Y
Sbjct: 1069 EEVMCL-NGNWTE-PPQCKDSTGKCGPPPPIDNGDITSFPLSVYAPASSVEYQCQNLY 1124
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 88/219 (40%), Gaps = 45/219 (20%)
Query: 11 GQWSGEVPTCQQIIC--PKIVVENPYLTLVEQNNTYRGHAIFQ--CSWGYQLKGPPDIVC 66
G WS E P C +I C P ++ +P + Q Y+ + FQ C+ GY+ D VC
Sbjct: 178 GFWSKEKPKCVEISCKSPDVINGSP----ISQKIIYKENERFQYKCNMGYEYSERGDAVC 233
Query: 67 QKNGSWSGAIPECNAXXXXXXXXXXNPVHCPVPALPLNGHLIEDPTGGPYRVGAILQFAC 126
++G W +P C C P +P NG P +R G + + C
Sbjct: 234 TESG-WR-PLPSCEEKS------------CDNPYIP-NGDY--SPLRIKHRTGDEITYQC 276
Query: 127 -NDRHHLLGEETIVCTETGRWSRAPPRCKAR-CEYPGEPQNGKIIP-LKFFYDP---GDH 180
N + T CT TG W A PRC + C+YP G ++ Y P G +
Sbjct: 277 RNGFYPATRGNTAKCTSTG-WIPA-PRCTLKPCDYPDIKHGGLYHENMRRPYFPVAVGKY 334
Query: 181 IQVTCNDGYVKPLDITPTSGPY-----CQSDGTWSLDIP 214
C++ + P SG Y C DG WS +P
Sbjct: 335 YSYYCDEHFETP------SGSYWDHIHCTQDG-WSPAVP 366
Score = 34.3 bits (77), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 58/132 (43%), Gaps = 14/132 (10%)
Query: 95 HCPVPALPLNGHLIEDPTGGPYRVGAILQFACNDRHHLLGEETIVCTETGRWSRAPPRCK 154
C +P + + HL+ D Y+VG +L+F+C ++G ++ C G S P CK
Sbjct: 550 ECELPKIDV--HLVPDRKKDQYKVGEVLKFSCKPGFTIVGPNSVQCYHFG-LSPDLPICK 606
Query: 155 AR---CEYPGEPQNGKII-PLKFFYDPGDHIQVTCNDGY-------VKPLDITPTSGPYC 203
+ C P E NG + K Y + ++ CN + ++ +D T+ P C
Sbjct: 607 EQVQSCGPPPELLNGNVKEKTKEEYGHSEVVEYYCNPRFLMKGPNKIQCVDGEWTTLPVC 666
Query: 204 QSDGTWSLDIPH 215
+ + DIP
Sbjct: 667 IVEESTCGDIPE 678
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 48/117 (41%), Gaps = 18/117 (15%)
Query: 37 LVEQNNTYRGHAI---FQCSWGYQLKGPPDIVCQKNGSWSGAIPECNAXXXXXXXXXXNP 93
+ E+ GH+ + C+ + +KGP I C +G W+ +P C
Sbjct: 623 VKEKTKEEYGHSEVVEYYCNPRFLMKGPNKIQCV-DGEWT-TLPVCIVEESTCGD----- 675
Query: 94 VHCPVPALPLNGHLIEDPTGGPYRVGAILQFACNDRHHLLGEETIVCTETGRWSRAP 150
+P L + P PY G ++F C++ ++G +I C G W++ P
Sbjct: 676 ----IPELEHGWAQLSSP---PYYYGDSVEFNCSESFTMIGHRSITCIH-GVWTQLP 724
>pdb|2QFG|A Chain A, Solution Structure Of The N-Terminal Scr-15 FRAGMENT OF
Complement Factor H
Length = 312
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 63/149 (42%), Gaps = 16/149 (10%)
Query: 44 YRGHAIFQCSWGYQLKGPPDIVCQKNGSWSGAIPECNAXXXXXXXXXXNPVHCPVPALPL 103
Y A++ C+ GYQL G + W+ IP C V C P
Sbjct: 90 YGVKAVYTCNEGYQLLGEINYRECDTDGWTNDIPICEV------------VKCLPVTAPE 137
Query: 104 NGHLIEDPT--GGPYRVGAILQFACNDRHHLLGEETIVCTETGRWSRAPPRC-KARCEYP 160
NG ++ Y G ++F CN + + G+E + C++ G WS+ P+C + C+ P
Sbjct: 138 NGKIVSSAMEPDREYHFGQAVRFVCNSGYKIEGDEEMHCSDDGFWSKEKPKCVEISCKSP 197
Query: 161 GEPQNGKIIPLKFFYDPGDHIQVTCNDGY 189
+ NG I K Y + Q CN GY
Sbjct: 198 -DVINGSPISQKIIYKENERFQYKCNMGY 225
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 81/182 (44%), Gaps = 22/182 (12%)
Query: 13 WSGEVPTCQQIIC-PKIVVENPYL--TLVEQNNTYR-GHAI-FQCSWGYQLKGPPDIVCQ 67
W+ ++P C+ + C P EN + + +E + Y G A+ F C+ GY+++G ++ C
Sbjct: 118 WTNDIPICEVVKCLPVTAPENGKIVSSAMEPDREYHFGQAVRFVCNSGYKIEGDEEMHCS 177
Query: 68 KNGSWSGAIPECNAXXXXXXXXXXNPVHCPVPALPLNGHLIEDPTGGPYRVGAILQFACN 127
+G WS P+C + C P + +NG I Y+ Q+ CN
Sbjct: 178 DDGFWSKEKPKCVE------------ISCKSPDV-INGSPISQKI--IYKENERFQYKCN 222
Query: 128 DRHHLLGEETIVCTETGRWSRAPPRCKARCEYPGEPQNGKIIPLKFFYDPGDHIQVTCND 187
+ VCTE+G W P + C+ P P NG PL+ + GD I C +
Sbjct: 223 MGYEYSERGDAVCTESG-WRPLPSCEEKSCDNPYIP-NGDYSPLRIKHRTGDEITYQCRN 280
Query: 188 GY 189
G+
Sbjct: 281 GF 282
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 68/175 (38%), Gaps = 21/175 (12%)
Query: 47 HAIFQCSWGYQLKGPPDIVCQKNGSWSGAIPECNAXXXXXXXXXXNPVHCPVPALPLNGH 106
AI++C GY+ G +VC+K G W N +P P L G
Sbjct: 31 QAIYKCRPGYRSLGNVIMVCRK-GEWVAL----NPLRKCQKRPCGHPGDTPFGTFTLTG- 84
Query: 107 LIEDPTGGPYRVGAILQFACNDRHHLLGEETIVCTETGRWSRAPPRCK-ARCEYPGEPQN 165
G + G + CN+ + LLGE +T W+ P C+ +C P+N
Sbjct: 85 ------GNVFEYGVKAVYTCNEGYQLLGEINYRECDTDGWTNDIPICEVVKCLPVTAPEN 138
Query: 166 GKIIPLKF----FYDPGDHIQVTCNDGYVKPLDITPTSGPYCQSDGTWSLDIPHC 216
GKI+ Y G ++ CN GY I +C DG WS + P C
Sbjct: 139 GKIVSSAMEPDREYHFGQAVRFVCNSGY----KIEGDEEMHCSDDGFWSKEKPKC 189
Score = 34.3 bits (77), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 61/148 (41%), Gaps = 28/148 (18%)
Query: 11 GQWSGEVPTCQQIIC--PKIVVENPYLTLVEQNNTYRGHAIFQ--CSWGYQLKGPPDIVC 66
G WS E P C +I C P ++ +P + Q Y+ + FQ C+ GY+ D VC
Sbjct: 180 GFWSKEKPKCVEISCKSPDVINGSP----ISQKIIYKENERFQYKCNMGYEYSERGDAVC 235
Query: 67 QKNGSWSGAIPECNAXXXXXXXXXXNPVHCPVPALPLNGHLIEDPTGGPYRVGAILQFAC 126
++G W +P C C P +P NG P +R G + + C
Sbjct: 236 TESG-WR-PLPSCEEK------------SCDNPYIP-NGDY--SPLRIKHRTGDEITYQC 278
Query: 127 -NDRHHLLGEETIVCTETGRWSRAPPRC 153
N + T CT TG W A PRC
Sbjct: 279 RNGFYPATRGNTAKCTSTG-WIPA-PRC 304
>pdb|3O8E|B Chain B, Structure Of Extracelllar Portion Of Cd46 In Complex With
Adenovirus Type 11 Knob
pdb|3O8E|D Chain D, Structure Of Extracelllar Portion Of Cd46 In Complex With
Adenovirus Type 11 Knob
Length = 252
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 56/127 (44%), Gaps = 8/127 (6%)
Query: 96 CPVPALPLNGHLIEDPTGGPYRVGAILQFACNDRHHLLGEETIVCTETGR---WSRAPPR 152
CP PLNG + P G Y G + F CN+ ++L+GEE + C G WS PP
Sbjct: 65 CPYIRDPLNGQAV--PANGTYEFGYQMHFICNEGYYLIGEEILYCELKGSVAIWSGKPPI 122
Query: 153 C-KARCEYPGEPQNGK-IIPLKFFYDPGDHIQVTCNDG-YVKPLDITPTSGPYCQSDGTW 209
C K C P + +NGK ++ D + +C+ P + S YC + W
Sbjct: 123 CEKVLCTPPPKIKNGKHTFSEVEVFEYLDAVTYSCDPAPGPDPFSLIGESTIYCGDNSVW 182
Query: 210 SLDIPHC 216
S P C
Sbjct: 183 SRAAPEC 189
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 83/194 (42%), Gaps = 36/194 (18%)
Query: 38 VEQNNTYR-GHAI-FQCSWGYQLKGPPDIVCQKNGS---WSGAIPECNAXXXXXXXXXXN 92
V N TY G+ + F C+ GY L G + C+ GS WSG P C
Sbjct: 77 VPANGTYEFGYQMHFICNEGYYLIGEEILYCELKGSVAIWSGKPPICEK----------- 125
Query: 93 PVHC-PVPALPLNGHLIEDPTGGPYRVGAILQFACN-----DRHHLLGEETIVCTETGRW 146
V C P P + H + Y + ++C+ D L+GE TI C + W
Sbjct: 126 -VLCTPPPKIKNGKHTFSEVEVFEYLDA--VTYSCDPAPGPDPFSLIGESTIYCGDNSVW 182
Query: 147 SRAPPRCK-ARCEYPGEPQNGKIIP---LKFFYDPGDHIQVTCNDGYVKPLDITPTSGPY 202
SRA P CK +C +P +NGK I KF+Y + C+ G+ LD + T
Sbjct: 183 SRAAPECKVVKCRFPVV-ENGKQISGFGKKFYYKA--TVMFECDKGFY--LDGSDTI--V 235
Query: 203 CQSDGTWSLDIPHC 216
C S+ TW +P C
Sbjct: 236 CDSNSTWDPPVPKC 249
Score = 53.9 bits (128), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 61/155 (39%), Gaps = 21/155 (13%)
Query: 6 FRVSQGQWSGEVPTCQQIIC-PKIVVENPYLTLVE-QNNTYRGHAIFQCSWG-----YQL 58
+ S WSG+ P C++++C P ++N T E + Y + C + L
Sbjct: 109 LKGSVAIWSGKPPICEKVLCTPPPKIKNGKHTFSEVEVFEYLDAVTYSCDPAPGPDPFSL 168
Query: 59 KGPPDIVCQKNGSWSGAIPECNAXXXXXXXXXXNPVHCPVPALPLNGHLIEDPTGGPYRV 118
G I C N WS A PEC V C P + NG I G +
Sbjct: 169 IGESTIYCGDNSVWSRAAPECKV------------VKCRFPVVE-NGKQISG-FGKKFYY 214
Query: 119 GAILQFACNDRHHLLGEETIVCTETGRWSRAPPRC 153
A + F C+ +L G +TIVC W P+C
Sbjct: 215 KATVMFECDKGFYLDGSDTIVCDSNSTWDPPVPKC 249
>pdb|1NTL|A Chain A, Model Of Mouse Crry-Ig Determined By Solution Scattering,
Curve Fitting And Homology Modelling
pdb|1NTL|B Chain B, Model Of Mouse Crry-Ig Determined By Solution Scattering,
Curve Fitting And Homology Modelling
Length = 551
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 50/223 (22%), Positives = 88/223 (39%), Gaps = 35/223 (15%)
Query: 13 WSGEVPTCQQIIC--PKIVVENPYLTLVEQNNTYRGHAIFQCSWG------YQLKGPPDI 64
W E P C+ I C P + + + ++ Y ++C+ + L G P +
Sbjct: 114 WDTEAPICEWIPCEIPPGIPNGDFFSSTREDFHYGMVVTYRCNTDARGKALFNLVGEPSL 173
Query: 65 VCQKN----GSWSGAIPECNAXXXXXXXXXXNPVHCPVPALPLNGHLIEDPTGGPYRVGA 120
C N G WSG P+C C P N ++ + + +
Sbjct: 174 YCTSNDGEIGVWSGPPPQCIELN-----------KCTPPPYVENAVMLSE-NRSLFSLRD 221
Query: 121 ILQFACNDRHHLLGEETIVCTETGRWSRAPPRC--KARCEYPGEP---QNGKIIPLKFFY 175
I++F C+ + G ++ C +W P C C P E Q G + +++Y
Sbjct: 222 IVEFRCHPGFIMKGASSVHCQSLNKWEPELPSCFKGVICRLPQEMSGFQKGLGMKKEYYY 281
Query: 176 DPGDHIQVTCNDGYVKPLDITPTSGPYCQSDGTWSLDIPHCTN 218
G+++ + C DGY + +S CQSDG+W+ + C +
Sbjct: 282 --GENVTLECEDGYT----LEGSSQSQCQSDGSWNPLLAKCVS 318
Score = 43.5 bits (101), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 60/159 (37%), Gaps = 17/159 (10%)
Query: 11 GQWSGEVPTCQQI--ICPKIVVENPYLTLVEQNNTYRGHAI--FQCSWGYQLKGPPDIVC 66
G WSG P C ++ P VEN + L E + + I F+C G+ +KG + C
Sbjct: 183 GVWSGPPPQCIELNKCTPPPYVENAVM-LSENRSLFSLRDIVEFRCHPGFIMKGASSVHC 241
Query: 67 QKNGSWSGAIPECNAXXXXXXXXXXNPVHCPVPALPLNGHLIEDPTGGPYRVGAILQFAC 126
Q W +P C V C +P ++G Y G + C
Sbjct: 242 QSLNKWEPELPSC-----------FKGVICRLPQ-EMSGFQKGLGMKKEYYYGENVTLEC 289
Query: 127 NDRHHLLGEETIVCTETGRWSRAPPRCKARCEYPGEPQN 165
D + L G C G W+ +C +R P P++
Sbjct: 290 EDGYTLEGSSQSQCQSDGSWNPLLAKCVSRLADPEVPRD 328
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 74/181 (40%), Gaps = 27/181 (14%)
Query: 47 HAIFQCSWGYQLKGPPDIVCQKNGSWSGAIPECNAXXXXXXXXXXNPVHCPVPALPLNGH 106
+ +++C GY +K I C+++ +W+ A +C C P+ P NG
Sbjct: 28 YLLYECLPGY-IKRQFSITCKQDSTWTSAEDKCIRK------------QCKTPSDPENG- 73
Query: 107 LIEDPTGGPYRVGAILQFACNDRHHLLGEETIVCTETGR---WSRAPPRCK-ARCEY-PG 161
L+ TG G+ + + CN + L+G + VC T + W P C+ CE PG
Sbjct: 74 LVHVHTG--IEFGSRINYTCNQGYRLIGSSSAVCVITDQSVDWDTEAPICEWIPCEIPPG 131
Query: 162 EPQNGKIIPLKFFYDPGDHIQVTCN-DGYVKPL-DITPTSGPYCQSD----GTWSLDIPH 215
P + + G + CN D K L ++ YC S+ G WS P
Sbjct: 132 IPNGDFFSSTREDFHYGMVVTYRCNTDARGKALFNLVGEPSLYCTSNDGEIGVWSGPPPQ 191
Query: 216 C 216
C
Sbjct: 192 C 192
Score = 33.5 bits (75), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Query: 9 SQGQWSGEVPTC-QQIIC--PKIVVENPYLTLVEQNNTYRGHAIFQCSWGYQLKGPPDIV 65
S +W E+P+C + +IC P+ + +++ Y + +C GY L+G
Sbjct: 243 SLNKWEPELPSCFKGVICRLPQEMSGFQKGLGMKKEYYYGENVTLECEDGYTLEGSSQSQ 302
Query: 66 CQKNGSWSGAIPEC 79
CQ +GSW+ + +C
Sbjct: 303 CQSDGSWNPLLAKC 316
>pdb|3IYP|F Chain F, The Interaction Of Decay-Accelerating Factor With
Echovirus 7
Length = 381
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 62/151 (41%), Gaps = 20/151 (13%)
Query: 12 QWSGEVPTCQQIICPKIVVENPYLTLVEQNNTYRGHAIFQCSWGYQLKGPPDIVCQKNGS 71
+WS V C++ CP V + F C+ GY+L G C +GS
Sbjct: 150 KWSTAVEFCKKKSCPNPGEIRNGQIDVPGGILFGATISFSCNTGYKLFGSTSSFCLISGS 209
Query: 72 ---WSGAIPECNAXXXXXXXXXXNPVHCPVPALPLNGHLIEDPTGGPYRVGAILQFACND 128
WS +PEC ++CP P NG + + YR + +ACN
Sbjct: 210 SVQWSDPLPECRE------------IYCPAPPQIDNGIIQGERDHYGYRQS--VTYACNK 255
Query: 129 RHHLLGEETIVCT---ETGRWSRAPPRCKAR 156
++GE +I CT + G WS PP C+ +
Sbjct: 256 GFTMIGEHSIYCTVNNDEGEWSGPPPECRGK 286
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 78/197 (39%), Gaps = 32/197 (16%)
Query: 30 VENPYLTLVEQNNTYRGHAI-FQCSWGYQLKGP--PDIVCQKNGSWSGAIPECNAXXXXX 86
++ PY+T QN G + ++C GY+ + P + C +N WS A+ C
Sbjct: 109 LKQPYIT---QNYFPVGTVVEYECRPGYRREPSLSPKLTCLQNLKWSTAVEFCKKK---- 161
Query: 87 XXXXXNPVHCPVPALPLNGHLIEDPTGGPYRVGAILQFACNDRHHLLGEETIVCTETG-- 144
CP P NG + D GG GA + F+CN + L G + C +G
Sbjct: 162 --------SCPNPGEIRNGQI--DVPGG-ILFGATISFSCNTGYKLFGSTSSFCLISGSS 210
Query: 145 -RWSRAPPRCKA-RCEYPGEPQNGKIIPLKFFYDPGDHIQVTCNDGYVKPLDITPTSGPY 202
+WS P C+ C P + NG I + Y + CN G+ + Y
Sbjct: 211 VQWSDPLPECREIYCPAPPQIDNGIIQGERDHYGYRQSVTYACNKGFT----MIGEHSIY 266
Query: 203 C---QSDGTWSLDIPHC 216
C +G WS P C
Sbjct: 267 CTVNNDEGEWSGPPPEC 283
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Query: 9 SQGQWSGEVPTCQQIICPK-IVVENPYLTLVEQNNTYRGHAIFQCSWGYQLKGPPDIVCQ 67
S QWS +P C++I CP ++N + + YR + C+ G+ + G I C
Sbjct: 209 SSVQWSDPLPECREIYCPAPPQIDNGIIQGERDHYGYRQSVTYACNKGFTMIGEHSIYCT 268
Query: 68 KN---GSWSGAIPECNA 81
N G WSG PEC
Sbjct: 269 VNNDEGEWSGPPPECRG 285
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/102 (18%), Positives = 42/102 (41%), Gaps = 7/102 (6%)
Query: 120 AILQFACNDRH-HLLGE-ETIVCTETGRWSRAPPRCKARCEYPGEPQNGKIIP---LKFF 174
++ + C + + GE ++++C + +WS C CE P + + + +
Sbjct: 59 TVITYKCEESFVKIPGEKDSVICLKGSQWSDIEEFCNRSCEVPTRLNSASLKQPYITQNY 118
Query: 175 YDPGDHIQVTCNDGYVKPLDITPTSGPYCQSDGTWSLDIPHC 216
+ G ++ C GY + ++P C + WS + C
Sbjct: 119 FPVGTVVEYECRPGYRREPSLSPKL--TCLQNLKWSTAVEFC 158
>pdb|1OJV|A Chain A, Decay Accelerating Factor (Cd55): The Structure Of An
Intact Human Complement Regulator.
pdb|1OJV|B Chain B, Decay Accelerating Factor (Cd55): The Structure Of An
Intact Human Complement Regulator.
pdb|1OJW|A Chain A, Decay Accelerating Factor (Cd55): The Structure Of An
Intact Human Complement Regulator.
pdb|1OJW|B Chain B, Decay Accelerating Factor (Cd55): The Structure Of An
Intact Human Complement Regulator.
pdb|1OJY|A Chain A, Decay Accelerating Factor (Cd55): The Structure Of An
Intact Human Complement Regulator.
pdb|1OJY|B Chain B, Decay Accelerating Factor (Cd55): The Structure Of An
Intact Human Complement Regulator.
pdb|1OJY|C Chain C, Decay Accelerating Factor (Cd55): The Structure Of An
Intact Human Complement Regulator.
pdb|1OJY|D Chain D, Decay Accelerating Factor (Cd55): The Structure Of An
Intact Human Complement Regulator.
pdb|1OK1|A Chain A, Decay Accelerating Factor (cd55): The Structure Of An
Intact Human Complement Regulator.
pdb|1OK1|B Chain B, Decay Accelerating Factor (cd55): The Structure Of An
Intact Human Complement Regulator.
pdb|1OK2|A Chain A, Decay Accelerating Factor (Cd55): The Structure Of An
Intact Human Complement Regulator.
pdb|1OK2|B Chain B, Decay Accelerating Factor (Cd55): The Structure Of An
Intact Human Complement Regulator.
pdb|1OK9|A Chain A, Decay Accelerating Factor (Cd55): The Structure Of An
Intact Human Complement Regulator.
pdb|1OK9|B Chain B, Decay Accelerating Factor (Cd55): The Structure Of An
Intact Human Complement Regulator.
pdb|3J24|B Chain B, Cryoem Reconstruction Of Complement Decay-Accelerating
Factor
Length = 254
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 61/150 (40%), Gaps = 20/150 (13%)
Query: 12 QWSGEVPTCQQIICPKIVVENPYLTLVEQNNTYRGHAIFQCSWGYQLKGPPDIVCQKNGS 71
+WS V C++ CP V + F C+ GY+L G C +GS
Sbjct: 118 KWSTAVEFCKKKSCPNPGEIRNGQIDVPGGILFGATISFSCNTGYKLFGSTSSFCLISGS 177
Query: 72 ---WSGAIPECNAXXXXXXXXXXNPVHCPVPALPLNGHLIEDPTGGPYRVGAILQFACND 128
WS +PEC ++CP P NG + + YR + +ACN
Sbjct: 178 SVQWSDPLPECRE------------IYCPAPPQIDNGIIQGERDHYGYRQS--VTYACNK 223
Query: 129 RHHLLGEETIVCT---ETGRWSRAPPRCKA 155
++GE +I CT + G WS PP C+
Sbjct: 224 GFTMIGEHSIYCTVNNDEGEWSGPPPECRG 253
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 78/197 (39%), Gaps = 32/197 (16%)
Query: 30 VENPYLTLVEQNNTYRGHAI-FQCSWGYQLKGP--PDIVCQKNGSWSGAIPECNAXXXXX 86
++ PY+T QN G + ++C GY+ + P + C +N WS A+ C
Sbjct: 77 LKQPYIT---QNYFPVGTVVEYECRPGYRREPSLSPKLTCLQNLKWSTAVEFCKKK---- 129
Query: 87 XXXXXNPVHCPVPALPLNGHLIEDPTGGPYRVGAILQFACNDRHHLLGEETIVCTETG-- 144
CP P NG + D GG GA + F+CN + L G + C +G
Sbjct: 130 --------SCPNPGEIRNGQI--DVPGG-ILFGATISFSCNTGYKLFGSTSSFCLISGSS 178
Query: 145 -RWSRAPPRCKA-RCEYPGEPQNGKIIPLKFFYDPGDHIQVTCNDGYVKPLDITPTSGPY 202
+WS P C+ C P + NG I + Y + CN G+ + Y
Sbjct: 179 VQWSDPLPECREIYCPAPPQIDNGIIQGERDHYGYRQSVTYACNKGFT----MIGEHSIY 234
Query: 203 C---QSDGTWSLDIPHC 216
C +G WS P C
Sbjct: 235 CTVNNDEGEWSGPPPEC 251
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Query: 9 SQGQWSGEVPTCQQIICPK-IVVENPYLTLVEQNNTYRGHAIFQCSWGYQLKGPPDIVCQ 67
S QWS +P C++I CP ++N + + YR + C+ G+ + G I C
Sbjct: 177 SSVQWSDPLPECREIYCPAPPQIDNGIIQGERDHYGYRQSVTYACNKGFTMIGEHSIYCT 236
Query: 68 KN---GSWSGAIPECNA 81
N G WSG PEC
Sbjct: 237 VNNDEGEWSGPPPECRG 253
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/102 (18%), Positives = 42/102 (41%), Gaps = 7/102 (6%)
Query: 120 AILQFACNDRH-HLLGE-ETIVCTETGRWSRAPPRCKARCEYPGEPQNGKIIP---LKFF 174
++ + C + + GE ++++C + +WS C CE P + + + +
Sbjct: 27 TVITYKCEESFVKIPGEKDSVICLKGSQWSDIEEFCNRSCEVPTRLNSASLKQPYITQNY 86
Query: 175 YDPGDHIQVTCNDGYVKPLDITPTSGPYCQSDGTWSLDIPHC 216
+ G ++ C GY + ++P C + WS + C
Sbjct: 87 FPVGTVVEYECRPGYRREPSLSPKL--TCLQNLKWSTAVEFC 126
>pdb|2C8I|E Chain E, Complex Of Echovirus Type 12 With Domains 1, 2, 3 And 4 Of
Its Receptor Decay Accelerating Factor (Cd55) By Cryo
Electron Microscopy At 16 A
Length = 316
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 61/150 (40%), Gaps = 20/150 (13%)
Query: 12 QWSGEVPTCQQIICPKIVVENPYLTLVEQNNTYRGHAIFQCSWGYQLKGPPDIVCQKNGS 71
+WS V C++ CP V + F C+ GY+L G C +GS
Sbjct: 181 KWSTAVEFCKKKSCPNPGEIRNGQIDVPGGILFGATISFSCNTGYKLFGSTSSFCLISGS 240
Query: 72 ---WSGAIPECNAXXXXXXXXXXNPVHCPVPALPLNGHLIEDPTGGPYRVGAILQFACND 128
WS +PEC ++CP P NG + + YR + +ACN
Sbjct: 241 SVQWSDPLPECRE------------IYCPAPPQIDNGIIQGERDHYGYRQS--VTYACNK 286
Query: 129 RHHLLGEETIVCT---ETGRWSRAPPRCKA 155
++GE +I CT + G WS PP C+
Sbjct: 287 GFTMIGEHSIYCTVNNDEGEWSGPPPECRG 316
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 67/162 (41%), Gaps = 29/162 (17%)
Query: 64 IVCQKNGSWSGAIPECNAXXXXXXXXXXNPVHCPVPALPLNGHLIEDP--TGGPYRVGAI 121
++C K WS CN C VP LN ++ P T + VG +
Sbjct: 110 VICLKGSQWSDIEEFCNR-------------SCEVPTR-LNSASLKQPYITQNYFPVGTV 155
Query: 122 LQFACND--RHHLLGEETIVCTETGRWSRAPPRCKAR-CEYPGEPQNGKI-IPLKFFYDP 177
+++ C R + C + +WS A CK + C PGE +NG+I +P +
Sbjct: 156 VEYECRPGYRREPSLSPKLTCLQNLKWSTAVEFCKKKSCPNPGEIRNGQIDVPGGILF-- 213
Query: 178 GDHIQVTCNDGYVKPLDITPTSGPYCQSDGT---WSLDIPHC 216
G I +CN GY + ++ +C G+ WS +P C
Sbjct: 214 GATISFSCNTGY----KLFGSTSSFCLISGSSVQWSDPLPEC 251
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Query: 9 SQGQWSGEVPTCQQIICPK-IVVENPYLTLVEQNNTYRGHAIFQCSWGYQLKGPPDIVCQ 67
S QWS +P C++I CP ++N + + YR + C+ G+ + G I C
Sbjct: 240 SSVQWSDPLPECREIYCPAPPQIDNGIIQGERDHYGYRQSVTYACNKGFTMIGEHSIYCT 299
Query: 68 KN---GSWSGAIPECNA 81
N G WSG PEC
Sbjct: 300 VNNDEGEWSGPPPECRG 316
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 31/163 (19%), Positives = 60/163 (36%), Gaps = 21/163 (12%)
Query: 64 IVCQKNGSWSGAIPECNAXXXXXXXXXXNPVHCPVP-ALPLNGHLIEDPTGGPYRVGAIL 122
++C K WS CN C +P +P +E T P ++
Sbjct: 46 VICLKGSQWSDIEEFCNRSQ-----------DCGLPPDVPNAQPALEGRTSFPE--DTVI 92
Query: 123 QFACNDRH-HLLGE-ETIVCTETGRWSRAPPRCKARCEYPGEPQNGKIIP---LKFFYDP 177
+ C + + GE ++++C + +WS C CE P + + + ++
Sbjct: 93 TYKCEESFVKIPGEKDSVICLKGSQWSDIEEFCNRSCEVPTRLNSASLKQPYITQNYFPV 152
Query: 178 GDHIQVTCNDGYVKPLDITPTSGPYCQSDGTWSLDIPHCTNYT 220
G ++ C GY + ++P C + WS + C +
Sbjct: 153 GTVVEYECRPGYRREPSLSPKL--TCLQNLKWSTAVEFCKKKS 193
>pdb|2XRB|A Chain A, Structure Of The N-Terminal Four Domains Of The Complement
Regulator Rat Crry
pdb|2XRD|A Chain A, Structure Of The N-Terminal Four Domains Of The Complement
Regulator Rat Crry
Length = 290
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/219 (22%), Positives = 83/219 (37%), Gaps = 37/219 (16%)
Query: 19 TCQQIICPKIVVENPY-----LTLVEQNNTYRGHAIFQCSWGYQLKGPPDIVC---QKNG 70
T Q +C + E P + V + + + C+ GY+L G +C ++
Sbjct: 88 TSPQDVCIRKQCETPLDPQNGIVHVNTDIRFGSSITYTCNEGYRLIGSSSAMCIISDQSV 147
Query: 71 SWSGAIPECNAXXXXXXXXXXNPVHCPVPALPLNGHLIEDPTGGPYRVGAILQFACN--- 127
+W P C + + C +P NG P + G ++ + CN
Sbjct: 148 AWDAEAPICES------------IPCEIPPSIPNGDFFS-PNREDFHYGMVVTYQCNTDA 194
Query: 128 ---DRHHLLGEETIVCT----ETGRWSRAPPRCKA--RCEYPGEPQNGKIIPLKFFYDPG 178
+L+GE +I CT + G WS PP+C +C P + K +
Sbjct: 195 RGKKLFNLVGEPSIHCTSIDGQVGVWSGPPPQCIELNKCTPPHVENAVIVSKNKSLFSLR 254
Query: 179 DHIQVTCNDGYVKPLDITPTSGPYCQSDGTWSLDIPHCT 217
D ++ C DG++ D S YC+S W +P C
Sbjct: 255 DMVEFRCQDGFMMKGD----SSVYCRSLNRWEPQLPSCA 289
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/155 (21%), Positives = 56/155 (36%), Gaps = 25/155 (16%)
Query: 13 WSGEVPTCQQIIC--PKIVVENPYLTLVEQNNTYRGHAIFQCSWG------YQLKGPPDI 64
W E P C+ I C P + + + ++ Y +QC+ + L G P I
Sbjct: 149 WDAEAPICESIPCEIPPSIPNGDFFSPNREDFHYGMVVTYQCNTDARGKKLFNLVGEPSI 208
Query: 65 VCQ----KNGSWSGAIPECNAXXXXXXXXXXNPVHCPVPALPLNGHLIEDPTGGPYRVGA 120
C + G WSG P+C P H + +I + +
Sbjct: 209 HCTSIDGQVGVWSGPPPQC------IELNKCTPPH-------VENAVIVSKNKSLFSLRD 255
Query: 121 ILQFACNDRHHLLGEETIVCTETGRWSRAPPRCKA 155
+++F C D + G+ ++ C RW P C A
Sbjct: 256 MVEFRCQDGFMMKGDSSVYCRSLNRWEPQLPSCAA 290
Score = 35.8 bits (81), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 6/75 (8%)
Query: 11 GQWSGEVPTCQQI-ICPKIVVENPYLTLVEQNNTY---RGHAIFQCSWGYQLKGPPDIVC 66
G WSG P C ++ C VEN +V +N + R F+C G+ +KG + C
Sbjct: 218 GVWSGPPPQCIELNKCTPPHVEN--AVIVSKNKSLFSLRDMVEFRCQDGFMMKGDSSVYC 275
Query: 67 QKNGSWSGAIPECNA 81
+ W +P C A
Sbjct: 276 RSLNRWEPQLPSCAA 290
Score = 33.9 bits (76), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 69/180 (38%), Gaps = 31/180 (17%)
Query: 50 FQCSWGYQLKGPPDIVCQKNGSWSGAIPECNAXXXXXXXXXXNPVHCPVPALPLNG--HL 107
++C GY +K I C+ N W+ C C P P NG H+
Sbjct: 66 YECRPGY-IKRQFSITCEVNSVWTSPQDVCIRK------------QCETPLDPQNGIVHV 112
Query: 108 IEDPTGGPYRVGAILQFACNDRHHLLGEETIVCT---ETGRWSRAPPRCKAR-CEYPGEP 163
D R G+ + + CN+ + L+G + +C ++ W P C++ CE P
Sbjct: 113 NTD-----IRFGSSITYTCNEGYRLIGSSSAMCIISDQSVAWDAEAPICESIPCEIPPSI 167
Query: 164 QNGKII-PLKFFYDPGDHIQVTCN-DGYVKPL-DITPTSGPYCQSD----GTWSLDIPHC 216
NG P + + G + CN D K L ++ +C S G WS P C
Sbjct: 168 PNGDFFSPNREDFHYGMVVTYQCNTDARGKKLFNLVGEPSIHCTSIDGQVGVWSGPPPQC 227
>pdb|2OK5|A Chain A, Human Complement Factor B
Length = 752
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 44/110 (40%), Gaps = 14/110 (12%)
Query: 50 FQCSWGYQLKGPPDIVCQKNGSWSGAIPECNAXXXXXXXXXXNPVHCPVPALPLNGHLIE 109
F C GY L+G + CQ NG WSG C+ +C P +P+ +
Sbjct: 114 FHCYDGYTLRGSANRTCQVNGRWSGQTAICD----------NGAGYCSNPGIPIGTRKV- 162
Query: 110 DPTGGPYRVGAILQFACNDRHHLLGEETIVCTETGRWSRAPPRCKARCEY 159
G YR+ + + C+ L G + C E G WS P C+ Y
Sbjct: 163 ---GSQYRLEDSVTYHCSRGLTLRGSQRRTCQEGGSWSGTEPSCQDSFMY 209
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 56/157 (35%), Gaps = 14/157 (8%)
Query: 65 VCQKNGSWSGAIPECNAXXXXXXXXXXNPVHCPVPALPLNGHLIEDPTGGPYRVGAILQF 124
C+ GSWS + +HCP P NG P Y V + F
Sbjct: 60 TCRSTGSWSTLKTQ---DQKTVRKAECRAIHCPRPHDFENGEYW--PRSPYYNVSDEISF 114
Query: 125 ACNDRHHLLGEETIVCTETGRWSRAPPRCK---ARCEYPGEPQNGKIIPLKFFYDPGDHI 181
C D + L G C GRWS C C PG P + + ++ + D +
Sbjct: 115 HCYDGYTLRGSANRTCQVNGRWSGQTAICDNGAGYCSNPGIPIGTRKVGSQYRLE--DSV 172
Query: 182 QVTCNDGYVKPLDITPTSGPYCQSDGTWSLDIPHCTN 218
C+ G L + + CQ G+WS P C +
Sbjct: 173 TYHCSRG----LTLRGSQRRTCQEGGSWSGTEPSCQD 205
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 50/119 (42%), Gaps = 17/119 (14%)
Query: 113 GGPYRV---GAILQFACNDRHHLLGEETIVCTETGRWSRAPPR---------CKA-RCEY 159
GG +R+ G L++ C + +T C TG WS + C+A C
Sbjct: 31 GGSFRLLQEGQALEYVCPSGFYPYPVQTRTCRSTGSWSTLKTQDQKTVRKAECRAIHCPR 90
Query: 160 PGEPQNGKIIPLKFFYDPGDHIQVTCNDGYVKPLDITPTSGPYCQSDGTWSLDIPHCTN 218
P + +NG+ P +Y+ D I C DGY + ++ CQ +G WS C N
Sbjct: 91 PHDFENGEYWPRSPYYNVSDEISFHCYDGYT----LRGSANRTCQVNGRWSGQTAICDN 145
Score = 35.0 bits (79), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 7/73 (9%)
Query: 11 GQWSGEVPTCQQIICPKIVVENPYLTLVEQN--NTYR--GHAIFQCSWGYQLKGPPDIVC 66
G+WSG+ C NP + + + + YR + CS G L+G C
Sbjct: 134 GRWSGQTAICDN---GAGYCSNPGIPIGTRKVGSQYRLEDSVTYHCSRGLTLRGSQRRTC 190
Query: 67 QKNGSWSGAIPEC 79
Q+ GSWSG P C
Sbjct: 191 QEGGSWSGTEPSC 203
>pdb|2XWB|F Chain F, Crystal Structure Of Complement C3b In Complex With
Factors B And D
pdb|2XWB|H Chain H, Crystal Structure Of Complement C3b In Complex With
Factors B And D
Length = 732
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 44/110 (40%), Gaps = 14/110 (12%)
Query: 50 FQCSWGYQLKGPPDIVCQKNGSWSGAIPECNAXXXXXXXXXXNPVHCPVPALPLNGHLIE 109
F C GY L+G + CQ NG WSG C+ +C P +P+ +
Sbjct: 95 FHCYDGYTLRGSANRTCQVNGRWSGQTAICD----------NGAGYCSNPGIPIGTRKV- 143
Query: 110 DPTGGPYRVGAILQFACNDRHHLLGEETIVCTETGRWSRAPPRCKARCEY 159
G YR+ + + C+ L G + C E G WS P C+ Y
Sbjct: 144 ---GSQYRLEDSVTYHCSRGLTLRGSQRRTCQEGGSWSGTEPSCQDSFMY 190
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 56/156 (35%), Gaps = 14/156 (8%)
Query: 66 CQKNGSWSGAIPECNAXXXXXXXXXXNPVHCPVPALPLNGHLIEDPTGGPYRVGAILQFA 125
C+ GSWS + +HCP P NG P Y V + F
Sbjct: 42 CRSTGSWSTLKTQ---DQKTVRKAECRAIHCPRPHDFENGEYW--PRSPYYNVSDEISFH 96
Query: 126 CNDRHHLLGEETIVCTETGRWSRAPPRCK---ARCEYPGEPQNGKIIPLKFFYDPGDHIQ 182
C D + L G C GRWS C C PG P + + ++ + D +
Sbjct: 97 CYDGYTLRGSANRTCQVNGRWSGQTAICDNGAGYCSNPGIPIGTRKVGSQYRLE--DSVT 154
Query: 183 VTCNDGYVKPLDITPTSGPYCQSDGTWSLDIPHCTN 218
C+ G L + + CQ G+WS P C +
Sbjct: 155 YHCSRG----LTLRGSQRRTCQEGGSWSGTEPSCQD 186
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 50/119 (42%), Gaps = 17/119 (14%)
Query: 113 GGPYRV---GAILQFACNDRHHLLGEETIVCTETGRWSRAPPR---------CKA-RCEY 159
GG +R+ G L++ C + +T C TG WS + C+A C
Sbjct: 12 GGSFRLLQEGQALEYVCPSGFYPYPVQTRTCRSTGSWSTLKTQDQKTVRKAECRAIHCPR 71
Query: 160 PGEPQNGKIIPLKFFYDPGDHIQVTCNDGYVKPLDITPTSGPYCQSDGTWSLDIPHCTN 218
P + +NG+ P +Y+ D I C DGY + ++ CQ +G WS C N
Sbjct: 72 PHDFENGEYWPRSPYYNVSDEISFHCYDGYT----LRGSANRTCQVNGRWSGQTAICDN 126
Score = 35.0 bits (79), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 7/73 (9%)
Query: 11 GQWSGEVPTCQQIICPKIVVENPYLTLVEQN--NTYR--GHAIFQCSWGYQLKGPPDIVC 66
G+WSG+ C NP + + + + YR + CS G L+G C
Sbjct: 115 GRWSGQTAICDN---GAGYCSNPGIPIGTRKVGSQYRLEDSVTYHCSRGLTLRGSQRRTC 171
Query: 67 QKNGSWSGAIPEC 79
Q+ GSWSG P C
Sbjct: 172 QEGGSWSGTEPSC 184
>pdb|3HRZ|D Chain D, Cobra Venom Factor (Cvf) In Complex With Human Factor B
pdb|3HS0|D Chain D, Cobra Venom Factor (Cvf) In Complex With Human Factor B
pdb|3HS0|I Chain I, Cobra Venom Factor (Cvf) In Complex With Human Factor B
pdb|2XWJ|I Chain I, Crystal Structure Of Complement C3b In Complex With Factor
B
pdb|2XWJ|J Chain J, Crystal Structure Of Complement C3b In Complex With Factor
B
pdb|2XWJ|K Chain K, Crystal Structure Of Complement C3b In Complex With Factor
B
pdb|2XWJ|L Chain L, Crystal Structure Of Complement C3b In Complex With Factor
B
Length = 741
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 44/110 (40%), Gaps = 14/110 (12%)
Query: 50 FQCSWGYQLKGPPDIVCQKNGSWSGAIPECNAXXXXXXXXXXNPVHCPVPALPLNGHLIE 109
F C GY L+G + CQ NG WSG C+ +C P +P+ +
Sbjct: 104 FHCYDGYTLRGSANRTCQVNGRWSGQTAICD----------NGAGYCSNPGIPIGTRKV- 152
Query: 110 DPTGGPYRVGAILQFACNDRHHLLGEETIVCTETGRWSRAPPRCKARCEY 159
G YR+ + + C+ L G + C E G WS P C+ Y
Sbjct: 153 ---GSQYRLEDSVTYHCSRGLTLRGSQRRTCQEGGSWSGTEPSCQDSFMY 199
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 56/157 (35%), Gaps = 14/157 (8%)
Query: 65 VCQKNGSWSGAIPECNAXXXXXXXXXXNPVHCPVPALPLNGHLIEDPTGGPYRVGAILQF 124
C+ GSWS + +HCP P NG P Y V + F
Sbjct: 50 TCRSTGSWSTLKTQ---DQKTVRKAECRAIHCPRPHDFENGEYW--PRSPYYNVSDEISF 104
Query: 125 ACNDRHHLLGEETIVCTETGRWSRAPPRCK---ARCEYPGEPQNGKIIPLKFFYDPGDHI 181
C D + L G C GRWS C C PG P + + ++ + D +
Sbjct: 105 HCYDGYTLRGSANRTCQVNGRWSGQTAICDNGAGYCSNPGIPIGTRKVGSQYRLE--DSV 162
Query: 182 QVTCNDGYVKPLDITPTSGPYCQSDGTWSLDIPHCTN 218
C+ G L + + CQ G+WS P C +
Sbjct: 163 TYHCSRG----LTLRGSQRRTCQEGGSWSGTEPSCQD 195
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 50/119 (42%), Gaps = 17/119 (14%)
Query: 113 GGPYRV---GAILQFACNDRHHLLGEETIVCTETGRWSRAPPR---------CKA-RCEY 159
GG +R+ G L++ C + +T C TG WS + C+A C
Sbjct: 21 GGSFRLLQEGQALEYVCPSGFYPYPVQTRTCRSTGSWSTLKTQDQKTVRKAECRAIHCPR 80
Query: 160 PGEPQNGKIIPLKFFYDPGDHIQVTCNDGYVKPLDITPTSGPYCQSDGTWSLDIPHCTN 218
P + +NG+ P +Y+ D I C DGY + ++ CQ +G WS C N
Sbjct: 81 PHDFENGEYWPRSPYYNVSDEISFHCYDGYT----LRGSANRTCQVNGRWSGQTAICDN 135
Score = 35.0 bits (79), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 7/73 (9%)
Query: 11 GQWSGEVPTCQQIICPKIVVENPYLTLVEQN--NTYR--GHAIFQCSWGYQLKGPPDIVC 66
G+WSG+ C NP + + + + YR + CS G L+G C
Sbjct: 124 GRWSGQTAICDN---GAGYCSNPGIPIGTRKVGSQYRLEDSVTYHCSRGLTLRGSQRRTC 180
Query: 67 QKNGSWSGAIPEC 79
Q+ GSWSG P C
Sbjct: 181 QEGGSWSGTEPSC 193
>pdb|1H04|P Chain P, Human Cd55 Domains 3 & 4
Length = 125
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 50/112 (44%), Gaps = 20/112 (17%)
Query: 50 FQCSWGYQLKGPPDIVCQKNGS---WSGAIPECNAXXXXXXXXXXNPVHCPVPALPLNGH 106
F C+ GY+L G C +GS WS +PEC ++CP P NG
Sbjct: 28 FSCNTGYKLAGSTSSFCLISGSSVQWSDPLPECRE------------IYCPAPPQIDNGI 75
Query: 107 LIEDPTGGPYRVGAILQFACNDRHHLLGEETIVCT---ETGRWSRAPPRCKA 155
+ + YR + +ACN ++GE +I CT + G WS PP C+
Sbjct: 76 IQGERDHYGYRQS--VTYACNKGFTMIGEHSIYCTVNNDAGEWSGPPPECRG 125
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Query: 9 SQGQWSGEVPTCQQIICPK-IVVENPYLTLVEQNNTYRGHAIFQCSWGYQLKGPPDIVCQ 67
S QWS +P C++I CP ++N + + YR + C+ G+ + G I C
Sbjct: 49 SSVQWSDPLPECREIYCPAPPQIDNGIIQGERDHYGYRQSVTYACNKGFTMIGEHSIYCT 108
Query: 68 KN---GSWSGAIPECNA 81
N G WSG PEC
Sbjct: 109 VNNDAGEWSGPPPECRG 125
>pdb|1OK3|A Chain A, Decay Accelerating Factor (cd55): The Structure Of An
Intact Human Complement Regulator.
pdb|1OK3|B Chain B, Decay Accelerating Factor (cd55): The Structure Of An
Intact Human Complement Regulator
Length = 254
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 60/150 (40%), Gaps = 20/150 (13%)
Query: 12 QWSGEVPTCQQIICPKIVVENPYLTLVEQNNTYRGHAIFQCSWGYQLKGPPDIVCQKNGS 71
+WS V C++ CP V + F C+ GY+L G C +GS
Sbjct: 118 KWSTAVEFCKKKSCPNPGEIRNGQIDVPGGILFGATISFSCNTGYKLFGSTSSFCLISGS 177
Query: 72 ---WSGAIPECNAXXXXXXXXXXNPVHCPVPALPLNGHLIEDPTGGPYRVGAILQFACND 128
WS +PEC ++CP P NG + + YR + +ACN
Sbjct: 178 SVQWSDPLPECRE------------IYCPAPPQIDNGIIQGERDHYGYRQS--VTYACNK 223
Query: 129 RHHLLGEETIVCT---ETGRWSRAPPRCKA 155
+GE +I CT + G WS PP C+
Sbjct: 224 GFTXIGEHSIYCTVNNDEGEWSGPPPECRG 253
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 77/197 (39%), Gaps = 32/197 (16%)
Query: 30 VENPYLTLVEQNNTYRGHAI-FQCSWGYQLKGP--PDIVCQKNGSWSGAIPECNAXXXXX 86
++ PY+T QN G + ++C GY+ + P + C +N WS A+ C
Sbjct: 77 LKQPYIT---QNYFPVGTVVEYECRPGYRREPSLSPKLTCLQNLKWSTAVEFCKKK---- 129
Query: 87 XXXXXNPVHCPVPALPLNGHLIEDPTGGPYRVGAILQFACNDRHHLLGEETIVCTETG-- 144
CP P NG + D GG GA + F+CN + L G + C +G
Sbjct: 130 --------SCPNPGEIRNGQI--DVPGG-ILFGATISFSCNTGYKLFGSTSSFCLISGSS 178
Query: 145 -RWSRAPPRCKA-RCEYPGEPQNGKIIPLKFFYDPGDHIQVTCNDGYVKPLDITPTSGPY 202
+WS P C+ C P + NG I + Y + CN G+ Y
Sbjct: 179 VQWSDPLPECREIYCPAPPQIDNGIIQGERDHYGYRQSVTYACNKGFTX----IGEHSIY 234
Query: 203 C---QSDGTWSLDIPHC 216
C +G WS P C
Sbjct: 235 CTVNNDEGEWSGPPPEC 251
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
Query: 9 SQGQWSGEVPTCQQIICPK-IVVENPYLTLVEQNNTYRGHAIFQCSWGYQLKGPPDIVCQ 67
S QWS +P C++I CP ++N + + YR + C+ G+ G I C
Sbjct: 177 SSVQWSDPLPECREIYCPAPPQIDNGIIQGERDHYGYRQSVTYACNKGFTXIGEHSIYCT 236
Query: 68 KN---GSWSGAIPECNA 81
N G WSG PEC
Sbjct: 237 VNNDEGEWSGPPPECRG 253
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/102 (18%), Positives = 42/102 (41%), Gaps = 7/102 (6%)
Query: 120 AILQFACNDRH-HLLGE-ETIVCTETGRWSRAPPRCKARCEYPGEPQNGKIIP---LKFF 174
++ + C + + GE ++++C + +WS C CE P + + + +
Sbjct: 27 TVITYKCEESFVKIPGEKDSVICLKGSQWSDIEEFCNRSCEVPTRLNSASLKQPYITQNY 86
Query: 175 YDPGDHIQVTCNDGYVKPLDITPTSGPYCQSDGTWSLDIPHC 216
+ G ++ C GY + ++P C + WS + C
Sbjct: 87 FPVGTVVEYECRPGYRREPSLSPKL--TCLQNLKWSTAVEFC 126
>pdb|2RLQ|A Chain A, Nmr Structure Of Ccp Modules 2-3 Of Complement Factor H
Length = 129
Score = 50.4 bits (119), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 47/112 (41%), Gaps = 14/112 (12%)
Query: 44 YRGHAIFQCSWGYQLKGPPDIVCQKNGSWSGAIPECNAXXXXXXXXXXNPVHCPVPALPL 103
Y A++ C+ GYQL G + W+ IP C V C P
Sbjct: 29 YGVKAVYTCNEGYQLLGEINYRECDTDGWTNDIPICEV------------VKCLPVTAPE 76
Query: 104 NGHLIEDPT--GGPYRVGAILQFACNDRHHLLGEETIVCTETGRWSRAPPRC 153
NG ++ Y G ++F CN + + G+E + C++ G WS+ P+C
Sbjct: 77 NGKIVSSAMEPDREYHFGQAVRFVCNSGYKIEGDEEMHCSDDGFWSKEKPKC 128
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 46/110 (41%), Gaps = 9/110 (8%)
Query: 113 GGPYRVGAILQFACNDRHHLLGEETIVCTETGRWSRAPPRCK-ARCEYPGEPQNGKIIPL 171
G + G + CN+ + LLGE +T W+ P C+ +C P+NGKI+
Sbjct: 24 GNVFEYGVKAVYTCNEGYQLLGEINYRECDTDGWTNDIPICEVVKCLPVTAPENGKIVSS 83
Query: 172 KF----FYDPGDHIQVTCNDGYVKPLDITPTSGPYCQSDGTWSLDIPHCT 217
Y G ++ CN GY I +C DG WS + P C
Sbjct: 84 AMEPDREYHFGQAVRFVCNSGY----KIEGDEEMHCSDDGFWSKEKPKCV 129
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Query: 13 WSGEVPTCQQIIC-PKIVVENPYL--TLVEQNNTYR-GHAI-FQCSWGYQLKGPPDIVCQ 67
W+ ++P C+ + C P EN + + +E + Y G A+ F C+ GY+++G ++ C
Sbjct: 57 WTNDIPICEVVKCLPVTAPENGKIVSSAMEPDREYHFGQAVRFVCNSGYKIEGDEEMHCS 116
Query: 68 KNGSWSGAIPEC 79
+G WS P+C
Sbjct: 117 DDGFWSKEKPKC 128
>pdb|1H03|P Chain P, Human Cd55 Domains 3 & 4
pdb|1H03|Q Chain Q, Human Cd55 Domains 3 & 4
pdb|1H2Q|P Chain P, Human Cd55 Domains 3 & 4
pdb|1UOT|P Chain P, Human Cd55 Domains 3 & 4
Length = 125
Score = 50.1 bits (118), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 50/112 (44%), Gaps = 20/112 (17%)
Query: 50 FQCSWGYQLKGPPDIVCQKNGS---WSGAIPECNAXXXXXXXXXXNPVHCPVPALPLNGH 106
F C+ GY+L G C +GS WS +PEC ++CP P NG
Sbjct: 28 FSCNTGYKLFGSTSSFCLISGSSVQWSDPLPECRE------------IYCPAPPQIDNGI 75
Query: 107 LIEDPTGGPYRVGAILQFACNDRHHLLGEETIVCT---ETGRWSRAPPRCKA 155
+ + YR + +ACN ++GE +I CT + G WS PP C+
Sbjct: 76 IQGERDHYGYR--QSVTYACNKGFTMIGEHSIYCTVNNDEGEWSGPPPECRG 125
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Query: 9 SQGQWSGEVPTCQQIICPK-IVVENPYLTLVEQNNTYRGHAIFQCSWGYQLKGPPDIVCQ 67
S QWS +P C++I CP ++N + + YR + C+ G+ + G I C
Sbjct: 49 SSVQWSDPLPECREIYCPAPPQIDNGIIQGERDHYGYRQSVTYACNKGFTMIGEHSIYCT 108
Query: 68 KN---GSWSGAIPECNA 81
N G WSG PEC
Sbjct: 109 VNNDEGEWSGPPPECRG 125
>pdb|1H2P|P Chain P, Human Cd55 Domains 3 & 4
Length = 125
Score = 50.1 bits (118), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 50/112 (44%), Gaps = 20/112 (17%)
Query: 50 FQCSWGYQLKGPPDIVCQKNGS---WSGAIPECNAXXXXXXXXXXNPVHCPVPALPLNGH 106
F C+ GY+L G C +GS WS +PEC ++CP P NG
Sbjct: 28 FSCNTGYKLFGSTSSFCLISGSSVQWSDPLPECRE------------IYCPAPPQIDNGI 75
Query: 107 LIEDPTGGPYRVGAILQFACNDRHHLLGEETIVCT---ETGRWSRAPPRCKA 155
+ + YR + +ACN ++GE +I CT + G WS PP C+
Sbjct: 76 IQGERDHYGYR--QSVTYACNKGFTMIGEHSIYCTVNNDEGEWSGPPPECRG 125
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Query: 9 SQGQWSGEVPTCQQIICPK-IVVENPYLTLVEQNNTYRGHAIFQCSWGYQLKGPPDIVCQ 67
S QWS +P C++I CP ++N + + YR + C+ G+ + G I C
Sbjct: 49 SSVQWSDPLPECREIYCPAPPQIDNGIIQGERDHYGYRQSVTYACNKGFTMIGEHSIYCT 108
Query: 68 KN---GSWSGAIPECNA 81
N G WSG PEC
Sbjct: 109 VNNDEGEWSGPPPECRG 125
>pdb|1UPN|E Chain E, Complex Of Echovirus Type 12 With Domains 3 And 4 Of Its
Receptor Decay Accelerating Factor (Cd55) By Cryo
Electron Microscopy At 16 A
Length = 129
Score = 50.1 bits (118), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 50/112 (44%), Gaps = 20/112 (17%)
Query: 50 FQCSWGYQLKGPPDIVCQKNGS---WSGAIPECNAXXXXXXXXXXNPVHCPVPALPLNGH 106
F C+ GY+L G C +GS WS +PEC ++CP P NG
Sbjct: 32 FSCNTGYKLFGSTSSFCLISGSSVQWSDPLPECRE------------IYCPAPPQIDNGI 79
Query: 107 LIEDPTGGPYRVGAILQFACNDRHHLLGEETIVCT---ETGRWSRAPPRCKA 155
+ + YR + +ACN ++GE +I CT + G WS PP C+
Sbjct: 80 IQGERDHYGYR--QSVTYACNKGFTMIGEHSIYCTVNNDEGEWSGPPPECRG 129
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Query: 9 SQGQWSGEVPTCQQIICPK-IVVENPYLTLVEQNNTYRGHAIFQCSWGYQLKGPPDIVCQ 67
S QWS +P C++I CP ++N + + YR + C+ G+ + G I C
Sbjct: 53 SSVQWSDPLPECREIYCPAPPQIDNGIIQGERDHYGYRQSVTYACNKGFTMIGEHSIYCT 112
Query: 68 KN---GSWSGAIPECNA 81
N G WSG PEC
Sbjct: 113 VNNDEGEWSGPPPECRG 129
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 10/67 (14%)
Query: 154 KARCEYPGEPQNGKI-IPLKFFYDPGDHIQVTCNDGYVKPLDITPTSGPYCQSDGT---W 209
K C PGE +NG+I +P + G I +CN GY + ++ +C G+ W
Sbjct: 4 KKSCPNPGEIRNGQIDVPGGILF--GATISFSCNTGY----KLFGSTSSFCLISGSSVQW 57
Query: 210 SLDIPHC 216
S +P C
Sbjct: 58 SDPLPEC 64
>pdb|1NTJ|A Chain A, Model Of Rat Crry Determined By Solution Scattering, Curve
Fitting And Homology Modelling
Length = 320
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/223 (22%), Positives = 82/223 (36%), Gaps = 38/223 (17%)
Query: 13 WSGEVPTCQQIIC--PKIVVENPYLTLVEQNNTYRGHAIFQCSWG------YQLKGPPDI 64
W E P C+ I C P + + + ++ Y +QC+ + L G P I
Sbjct: 116 WDAEAPICESIPCEIPPSIPNGDFFSPNREDFHYGMVVTYQCNTDARGKKLFNLVGEPSI 175
Query: 65 VCQ----KNGSWSGAIPECNAXXXXXXXXXXNPVHCPVPALPLNGHLIEDPTGGPYRVGA 120
C + G WSG P+C P H + +I + +
Sbjct: 176 HCTSIDGQVGVWSGPPPQC------IELNKCTPPH-------VENAVIVSKNKSLFSLRD 222
Query: 121 ILQFACNDRHHLLGEETIVCTETGRWSRAPPRC---KARCEYPGEPQNGKI-IPLKFFYD 176
+++F C D + G+ ++ C RW P C K+ + GE NG + +P
Sbjct: 223 MVEFRCQDGFMMKGDSSVYCRSLNRWEPQLPSCFKVKSCGAFLGELPNGHVFVPQNL--Q 280
Query: 177 PGDHIQVTCNDGYVKPLDITPTSGPYCQSDGT---WSLDIPHC 216
G + CN GY + S +C DG W+ +P C
Sbjct: 281 LGAKVTFVCNTGY----QLKGNSSSHCVLDGVESIWNSSVPVC 319
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 58/151 (38%), Gaps = 22/151 (14%)
Query: 11 GQWSGEVPTCQQI-ICPKIVVENPYLTLVEQNNTY---RGHAIFQCSWGYQLKGPPDIVC 66
G WSG P C ++ C VEN +V +N + R F+C G+ +KG + C
Sbjct: 185 GVWSGPPPQCIELNKCTPPHVEN--AVIVSKNKSLFSLRDMVEFRCQDGFMMKGDSSVYC 242
Query: 67 QKNGSWSGAIPECNAXXXXXXXXXXNPVHCPVPALPLNGHLIEDPTGGPYRVGAILQFAC 126
+ W +P C P NGH+ ++GA + F C
Sbjct: 243 RSLNRWEPQLPSCFKVKSCGAFLGELP----------NGHVFVPQN---LQLGAKVTFVC 289
Query: 127 NDRHHLLGEETIVCTETGR---WSRAPPRCK 154
N + L G + C G W+ + P C+
Sbjct: 290 NTGYQLKGNSSSHCVLDGVESIWNSSVPVCE 320
Score = 34.3 bits (77), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 69/180 (38%), Gaps = 31/180 (17%)
Query: 50 FQCSWGYQLKGPPDIVCQKNGSWSGAIPECNAXXXXXXXXXXNPVHCPVPALPLNG--HL 107
++C GY +K I C+ N W+ C C P P NG H+
Sbjct: 33 YECRPGY-IKRQFSITCEVNSVWTSPQDVCIRK------------QCETPLDPQNGIVHV 79
Query: 108 IEDPTGGPYRVGAILQFACNDRHHLLGEETIVCT---ETGRWSRAPPRCKAR-CEYPGEP 163
D R G+ + + CN+ + L+G + +C ++ W P C++ CE P
Sbjct: 80 NTD-----IRFGSSITYTCNEGYRLIGSSSAMCIISDQSVAWDAEAPICESIPCEIPPSI 134
Query: 164 QNGKII-PLKFFYDPGDHIQVTCN-DGYVKPL-DITPTSGPYCQSD----GTWSLDIPHC 216
NG P + + G + CN D K L ++ +C S G WS P C
Sbjct: 135 PNGDFFSPNREDFHYGMVVTYQCNTDARGKKLFNLVGEPSIHCTSIDGQVGVWSGPPPQC 194
>pdb|3ERB|A Chain A, The Crystal Structure Of C2b, A Fragment Of Complement
Component C2 Produced During C3-Convertase Formation
Length = 223
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 56/159 (35%), Gaps = 16/159 (10%)
Query: 61 PPDIVCQKNGSWSGAIPECNAXXXXXXXXXXNPVHCPVPALPLNGHLIEDPTGGPYRVGA 120
P +C+ +G W + PV CP P NG I P G Y VG
Sbjct: 39 PASRLCKSSGQW-----QTPGATRSLSKAVCKPVRCPAPVSFENG--IYTPRLGSYPVGG 91
Query: 121 ILQFACNDRHHLLGEETIVCTETGRWSRAPPRC---KARCEYPGEPQNGKIIPLKFFYDP 177
+ F C D L G C G W C C PG + F +
Sbjct: 92 NVSFECEDGFILRGSPVRQCRPNGMWDGETAVCDNGAGHCPNPGISLG--AVRTGFRFGH 149
Query: 178 GDHIQVTCNDGYVKPLDITPTSGPYCQSDGTWSLDIPHC 216
GD ++ C+ V +T +S CQ +G WS P C
Sbjct: 150 GDKVRYRCSSNLV----LTGSSERECQGNGVWSGTEPIC 184
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 58/154 (37%), Gaps = 22/154 (14%)
Query: 9 SQGQW-------SGEVPTCQQIICPK-IVVENPYLTLVEQNNTYRGHAIFQCSWGYQLKG 60
S GQW S C+ + CP + EN T + G+ F+C G+ L+G
Sbjct: 46 SSGQWQTPGATRSLSKAVCKPVRCPAPVSFENGIYTPRLGSYPVGGNVSFECEDGFILRG 105
Query: 61 PPDIVCQKNGSWSGAIPECNAXXXXXXXXXXNPVHCPVPALPLNGHLIEDPTGGPYRVGA 120
P C+ NG W G C+ HCP P + L TG + G
Sbjct: 106 SPVRQCRPNGMWDGETAVCDNGAG----------HCPNPGISLGAVR----TGFRFGHGD 151
Query: 121 ILQFACNDRHHLLGEETIVCTETGRWSRAPPRCK 154
+++ C+ L G C G WS P C+
Sbjct: 152 KVRYRCSSNLVLTGSSERECQGNGVWSGTEPICR 185
Score = 31.6 bits (70), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 46/108 (42%), Gaps = 13/108 (12%)
Query: 119 GAILQFACNDRHHLLGEETIVCTETGRW-------SRAPPRCK-ARCEYPGEPQNGKIIP 170
G++L ++C + + +C +G+W S + CK RC P +NG P
Sbjct: 24 GSLLTYSCPQGLYP-SPASRLCKSSGQWQTPGATRSLSKAVCKPVRCPAPVSFENGIYTP 82
Query: 171 LKFFYDPGDHIQVTCNDGYVKPLDITPTSGPYCQSDGTWSLDIPHCTN 218
Y G ++ C DG++ L +P C+ +G W + C N
Sbjct: 83 RLGSYPVGGNVSFECEDGFI--LRGSPVR--QCRPNGMWDGETAVCDN 126
>pdb|1E5G|A Chain A, Solution Structure Of Central Cp Module Pair Of A Pox
Virus Complement Inhibitor
Length = 120
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 57/127 (44%), Gaps = 15/127 (11%)
Query: 95 HCPVPALPLNGHLIEDPTGGPYRVGAILQFACNDRHHLLGEETIVC----TETGRWSRAP 150
CP P NG L G G+ + ++CN +HL+GE C T + W+
Sbjct: 2 RCPSPRDIDNGQLDI----GGVDFGSSITYSCNSGYHLIGESKSYCELGSTGSMVWNPEA 57
Query: 151 PRCKA-RCEYPGEPQNGKIIPLKFFYDPGDHIQVTCNDGYVKPLDITPTSGPYCQSDGTW 209
P C++ +C+ P NG+ + FY G + +CN GY + SG C S G W
Sbjct: 58 PICESVKCQSPPSISNGRHNGYEDFYTDGSVVTYSCNSGY----SLIGNSGVLC-SGGEW 112
Query: 210 SLDIPHC 216
S D P C
Sbjct: 113 S-DPPTC 118
>pdb|1G40|A Chain A, Crystal Structure Of A Complement Protein That Regulates
Both Pathways Of Complement Activation And Binds Heparan
Sulfate Proteoglycans
pdb|1G40|B Chain B, Crystal Structure Of A Complement Protein That Regulates
Both Pathways Of Complement Activation And Binds Heparan
Sulfate Proteoglycans
pdb|1G44|A Chain A, Crystal Structure Of A Complement Control Protein That
Regulates Both Pathways Of Complement Activation And
Binds Heparan Sulfate Proteoglycans
pdb|1G44|B Chain B, Crystal Structure Of A Complement Control Protein That
Regulates Both Pathways Of Complement Activation And
Binds Heparan Sulfate Proteoglycans
pdb|1G44|C Chain C, Crystal Structure Of A Complement Control Protein That
Regulates Both Pathways Of Complement Activation And
Binds Heparan Sulfate Proteoglycans
pdb|1RID|A Chain A, Vaccinia Complement Protein In Complex With Heparin
pdb|1RID|B Chain B, Vaccinia Complement Protein In Complex With Heparin
pdb|1Y8E|A Chain A, Vcp:suramin Complex
pdb|1Y8E|B Chain B, Vcp:suramin Complex
Length = 244
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 57/127 (44%), Gaps = 15/127 (11%)
Query: 95 HCPVPALPLNGHLIEDPTGGPYRVGAILQFACNDRHHLLGEETIVC----TETGRWSRAP 150
CP P NG L G G+ + ++CN +HL+GE C T + W+
Sbjct: 66 RCPSPRDIDNGQL----DIGGVDFGSSITYSCNSGYHLIGESKSYCELGSTGSMVWNPEA 121
Query: 151 PRCKA-RCEYPGEPQNGKIIPLKFFYDPGDHIQVTCNDGYVKPLDITPTSGPYCQSDGTW 209
P C++ +C+ P NG+ + FY G + +CN GY + SG C S G W
Sbjct: 122 PICESVKCQSPPSISNGRHNGYEDFYTDGSVVTYSCNSGY----SLIGNSGVLC-SGGEW 176
Query: 210 SLDIPHC 216
S D P C
Sbjct: 177 S-DPPTC 182
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Query: 9 SQGQWSGEVPTCQQIICPKIVVENPYLTL-VEQNNTYRGHAIFQCSWGYQLKGPPDIVCQ 67
S G+WS + PTCQ + CP + N YL+ +++ +Y + F+C +GY+L G C
Sbjct: 172 SGGEWS-DPPTCQIVKCPHPTISNGYLSSGFKRSYSYNDNVDFKCKYGYKLSGSSSSTCS 230
Query: 68 KNGSWSGAIPEC 79
+W +P+C
Sbjct: 231 PGNTWKPELPKC 242
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 66/172 (38%), Gaps = 25/172 (14%)
Query: 50 FQCSWGYQLKGPPDIVCQKNGS----WSGAIPECNAXXXXXXXXXXNPVHCPVPALPLNG 105
+ C+ GY L G C+ + W+ P C + V C P NG
Sbjct: 91 YSCNSGYHLIGESKSYCELGSTGSMVWNPEAPICES------------VKCQSPPSISNG 138
Query: 106 HLIEDPTGGPYRVGAILQFACNDRHHLLGEETIVCTETGRWSRAPPRCK-ARCEYPGEPQ 164
+ Y G+++ ++CN + L+G ++C+ G WS PP C+ +C +P
Sbjct: 139 R--HNGYEDFYTDGSVVTYSCNSGYSLIGNSGVLCS-GGEWSD-PPTCQIVKCPHPTISN 194
Query: 165 NGKIIPLKFFYDPGDHIQVTCNDGYVKPLDITPTSGPYCQSDGTWSLDIPHC 216
K Y D++ C GY + T P TW ++P C
Sbjct: 195 GYLSSGFKRSYSYNDNVDFKCKYGYKLSGSSSSTCSP----GNTWKPELPKC 242
Score = 27.3 bits (59), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 50/142 (35%), Gaps = 17/142 (11%)
Query: 13 WSGEVPTCQQIICPKI-VVENPYLTLVEQNNTYRGHAIFQCSWGYQLKGPPDIVCQKNGS 71
W+ E P C+ + C + N E T + C+ GY L G ++C G
Sbjct: 117 WNPEAPICESVKCQSPPSISNGRHNGYEDFYTDGSVVTYSCNSGYSLIGNSGVLCS-GGE 175
Query: 72 WSGAIPECNAXXXXXXXXXXNPVHCPVPALPLNGHLIEDPTGGPYRVGAILQFACNDRHH 131
WS P C V CP P + NG+L Y + F C +
Sbjct: 176 WSDP-PTCQI------------VKCPHPTIS-NGYL-SSGFKRSYSYNDNVDFKCKYGYK 220
Query: 132 LLGEETIVCTETGRWSRAPPRC 153
L G + C+ W P+C
Sbjct: 221 LSGSSSSTCSPGNTWKPELPKC 242
>pdb|1M11|R Chain R, Structural Model Of Human Decay-accelerating Factor Bound
To Echovirus 7 From Cryo-electron Microscopy
Length = 243
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 69/168 (41%), Gaps = 25/168 (14%)
Query: 30 VENPYLTLVEQNNTYRGHAI-FQCSWGYQLK--GPPDIVCQKNGSWSGAIPECNAXXXXX 86
++ PY+T QN G + ++C GY+ + P + C +N WS A+ C
Sbjct: 75 LKQPYIT---QNYFPVGTVVEYECRPGYRREPSLSPKLTCLQNLKWSTAVEFCKKK---- 127
Query: 87 XXXXXNPVHCPVPALPLNGHLIEDPTGGPYRVGAILQFACNDRHHLLGEETIVCTETG-- 144
CP P NG + D GG GA + F+CN + L G + C +G
Sbjct: 128 --------SCPNPGEIRNGQI--DVPGG-ILFGATISFSCNTGYKLFGSTSSFCLISGSS 176
Query: 145 -RWSRAPPRCKA-RCEYPGEPQNGKIIPLKFFYDPGDHIQVTCNDGYV 190
+WS P C+ C P + NG I + Y + CN G+
Sbjct: 177 VQWSDPLPECREIYCPAPPQIDNGIIQGERDHYGYRQSVTYACNKGFT 224
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 57/142 (40%), Gaps = 20/142 (14%)
Query: 12 QWSGEVPTCQQIICPKIVVENPYLTLVEQNNTYRGHAIFQCSWGYQLKGPPDIVCQKNGS 71
+WS V C++ CP V + F C+ GY+L G C +GS
Sbjct: 116 KWSTAVEFCKKKSCPNPGEIRNGQIDVPGGILFGATISFSCNTGYKLFGSTSSFCLISGS 175
Query: 72 ---WSGAIPECNAXXXXXXXXXXNPVHCPVPALPLNGHLIEDPTGGPYRVGAILQFACND 128
WS +PEC ++CP P NG + + YR + +ACN
Sbjct: 176 SVQWSDPLPECRE------------IYCPAPPQIDNGIIQGERDHYGYRQS--VTYACNK 221
Query: 129 RHHLLGEETIVCT---ETGRWS 147
++GE +I CT + G WS
Sbjct: 222 GFTMIGEHSIYCTVNNDEGEWS 243
Score = 34.7 bits (78), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Query: 9 SQGQWSGEVPTCQQIICPK-IVVENPYLTLVEQNNTYRGHAIFQCSWGYQLKGPPDIVCQ 67
S QWS +P C++I CP ++N + + YR + C+ G+ + G I C
Sbjct: 175 SSVQWSDPLPECREIYCPAPPQIDNGIIQGERDHYGYRQSVTYACNKGFTMIGEHSIYCT 234
Query: 68 KN---GSWS 73
N G WS
Sbjct: 235 VNNDEGEWS 243
Score = 28.5 bits (62), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/102 (18%), Positives = 42/102 (41%), Gaps = 7/102 (6%)
Query: 120 AILQFACNDRH-HLLGE-ETIVCTETGRWSRAPPRCKARCEYPGEPQNGKIIP---LKFF 174
++ + C + + GE ++++C + +WS C CE P + + + +
Sbjct: 25 TVITYKCEESFVKIPGEKDSVICLKGSQWSDIEEFCNRSCEVPTRLNSASLKQPYITQNY 84
Query: 175 YDPGDHIQVTCNDGYVKPLDITPTSGPYCQSDGTWSLDIPHC 216
+ G ++ C GY + ++P C + WS + C
Sbjct: 85 FPVGTVVEYECRPGYRREPSLSPKLT--CLQNLKWSTAVEFC 124
>pdb|1CKL|A Chain A, N-Terminal Two Domains Of Human Cd46 (Membrane Cofactor
Protein, Mcp)
pdb|1CKL|B Chain B, N-Terminal Two Domains Of Human Cd46 (Membrane Cofactor
Protein, Mcp)
pdb|1CKL|C Chain C, N-Terminal Two Domains Of Human Cd46 (Membrane Cofactor
Protein, Mcp)
pdb|1CKL|D Chain D, N-Terminal Two Domains Of Human Cd46 (Membrane Cofactor
Protein, Mcp)
pdb|1CKL|E Chain E, N-Terminal Two Domains Of Human Cd46 (Membrane Cofactor
Protein, Mcp)
pdb|1CKL|F Chain F, N-Terminal Two Domains Of Human Cd46 (Membrane Cofactor
Protein, Mcp)
pdb|2O39|C Chain C, Human Adenovirus Type 11 Knob In Complex With Domains Scr1
And Scr2 Of Cd46 (membrane Cofactor Protein, Mcp)
pdb|2O39|D Chain D, Human Adenovirus Type 11 Knob In Complex With Domains Scr1
And Scr2 Of Cd46 (membrane Cofactor Protein, Mcp)
pdb|3INB|C Chain C, Structure Of The Measles Virus Hemagglutinin Bound To The
Cd46 Receptor
pdb|3INB|D Chain D, Structure Of The Measles Virus Hemagglutinin Bound To The
Cd46 Receptor
pdb|3L89|M Chain M, Human Adenovirus Type 21 Knob In Complex With Domains Scr1
And Scr2 Of Cd46 (Membrane Cofactor Protein, Mcp)
pdb|3L89|N Chain N, Human Adenovirus Type 21 Knob In Complex With Domains Scr1
And Scr2 Of Cd46 (Membrane Cofactor Protein, Mcp)
pdb|3L89|O Chain O, Human Adenovirus Type 21 Knob In Complex With Domains Scr1
And Scr2 Of Cd46 (Membrane Cofactor Protein, Mcp)
pdb|3L89|P Chain P, Human Adenovirus Type 21 Knob In Complex With Domains Scr1
And Scr2 Of Cd46 (Membrane Cofactor Protein, Mcp)
pdb|3L89|Q Chain Q, Human Adenovirus Type 21 Knob In Complex With Domains Scr1
And Scr2 Of Cd46 (Membrane Cofactor Protein, Mcp)
pdb|3L89|R Chain R, Human Adenovirus Type 21 Knob In Complex With Domains Scr1
And Scr2 Of Cd46 (Membrane Cofactor Protein, Mcp)
pdb|3L89|S Chain S, Human Adenovirus Type 21 Knob In Complex With Domains Scr1
And Scr2 Of Cd46 (Membrane Cofactor Protein, Mcp)
pdb|3L89|T Chain T, Human Adenovirus Type 21 Knob In Complex With Domains Scr1
And Scr2 Of Cd46 (Membrane Cofactor Protein, Mcp)
pdb|3L89|U Chain U, Human Adenovirus Type 21 Knob In Complex With Domains Scr1
And Scr2 Of Cd46 (Membrane Cofactor Protein, Mcp)
pdb|3L89|V Chain V, Human Adenovirus Type 21 Knob In Complex With Domains Scr1
And Scr2 Of Cd46 (Membrane Cofactor Protein, Mcp)
pdb|3L89|W Chain W, Human Adenovirus Type 21 Knob In Complex With Domains Scr1
And Scr2 Of Cd46 (Membrane Cofactor Protein, Mcp)
pdb|3L89|X Chain X, Human Adenovirus Type 21 Knob In Complex With Domains Scr1
And Scr2 Of Cd46 (Membrane Cofactor Protein, Mcp)
Length = 126
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
Query: 96 CPVPALPLNGHLIEDPTGGPYRVGAILQFACNDRHHLLGEETIVCTETGR---WSRAPPR 152
CP PLNG + P G Y G + F CN+ ++L+GEE + C G WS PP
Sbjct: 65 CPYIRDPLNGQAV--PANGTYEFGYQMHFICNEGYYLIGEEILYCELKGSVAIWSGKPPI 122
Query: 153 CK 154
C+
Sbjct: 123 CE 124
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 41/111 (36%), Gaps = 13/111 (11%)
Query: 116 YRVGAILQFACNDRHHL---LGEETIVCTETGRWSRAPPRCKAR--CEYPGEPQNGKIIP 170
Y +G + + C + L TI C W R C Y +P NG+ +P
Sbjct: 20 YEIGERVDYKCKKGYFYIPPLATHTI-CDRNHTWLPVSDDACYRETCPYIRDPLNGQAVP 78
Query: 171 LKFFYDPGDHIQVTCNDGYVKPLDITPTSGPYCQSDGT---WSLDIPHCTN 218
Y+ G + CN+GY + YC+ G+ WS P C
Sbjct: 79 ANGTYEFGYQMHFICNEGYY----LIGEEILYCELKGSVAIWSGKPPICEK 125
>pdb|1GKG|A Chain A, Structure Determination And Rational Mutagenesis Reveal
Binding Surface Of Immune Adherence Receptor, Cr1 (Cd35)
Length = 136
Score = 43.5 bits (101), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 56/136 (41%), Gaps = 22/136 (16%)
Query: 96 CPVPALPLNG--HLIEDPTGGPYRVGAILQFACNDRHHLLGE---ETIVCTETGRWSRAP 150
C P P+NG H+I D +VG+ + ++C H L+G E I+ T WS P
Sbjct: 7 CKTPPDPVNGMVHVITD-----IQVGSRITYSCTTGHRLIGHSSAECILSGNTAHWSTKP 61
Query: 151 PRC-KARCEYPGEPQNGKIIPL---KFFYDPGDHIQVTCNDGY--VKPLDITPTSGPYCQ 204
P C + C P NG I F Y G + CN G K ++ YC
Sbjct: 62 PICQRIPCGLPPTIANGDFISTNRENFHY--GSVVTYRCNLGSRGRKVFELVGEPSIYCT 119
Query: 205 SD----GTWSLDIPHC 216
S+ G WS P C
Sbjct: 120 SNDDQVGIWSGPAPQC 135
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 12/87 (13%)
Query: 5 VFRVSQGQWSGEVPTCQQIIC--PKIVVENPYLTLVEQNNTYRGHAIFQCSWG------Y 56
+ + WS + P CQ+I C P + +++ +N Y ++C+ G +
Sbjct: 49 ILSGNTAHWSTKPPICQRIPCGLPPTIANGDFISTNRENFHYGSVVTYRCNLGSRGRKVF 108
Query: 57 QLKGPPDIVCQKN----GSWSGAIPEC 79
+L G P I C N G WSG P+C
Sbjct: 109 ELVGEPSIYCTSNDDQVGIWSGPAPQC 135
>pdb|1W2R|A Chain A, Solution Structure Of Cr2 Scr 1-2 By X-Ray Scattering
pdb|1W2S|B Chain B, Solution Structure Of Cr2 Scr 1-2 In Its Complex With C3d
By X-Ray Scattering
Length = 142
Score = 43.5 bits (101), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 57/134 (42%), Gaps = 15/134 (11%)
Query: 94 VHCPVPALPLNGHLIEDPTGGPYRVGAILQFACNDRHHLLGEETIVCTET----GRWSRA 149
+ C P LNG + T P VG +++++C+ L+GE++++C G W +
Sbjct: 5 ISCGSPPPILNGRISYYST--PIAVGTVIRYSCSGTFRLIGEKSLLCITKDKVDGTWDKP 62
Query: 150 PPRCKARCEYPGEPQ----NGKIIPLKFFYDPGDHIQVTCNDGYVKPLDITPTSGPYCQS 205
P+C+ +Y P+ G I Y GD + C + + +CQ+
Sbjct: 63 APKCQYFNKYSSCPEPIVPGGYKIRGSTPYRHGDSVTFACKTNF----SMNGNKSVWCQA 118
Query: 206 DGTWS-LDIPHCTN 218
+ W +P C +
Sbjct: 119 NNMWGPTRLPTCVS 132
Score = 27.7 bits (60), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 22/66 (33%), Gaps = 4/66 (6%)
Query: 11 GQWSGEVPTCQQI----ICPKIVVENPYLTLVEQNNTYRGHAIFQCSWGYQLKGPPDIVC 66
G W P CQ CP+ +V Y + F C + + G + C
Sbjct: 57 GTWDKPAPKCQYFNKYSSCPEPIVPGGYKIRGSTPYRHGDSVTFACKTNFSMNGNKSVWC 116
Query: 67 QKNGSW 72
Q N W
Sbjct: 117 QANNMW 122
>pdb|3OED|C Chain C, The Structure Of The Complex Between Complement Receptor
Cr2 And Its Ligand Complement Fragment C3d
pdb|3OED|D Chain D, The Structure Of The Complex Between Complement Receptor
Cr2 And Its Ligand Complement Fragment C3d
Length = 135
Score = 43.5 bits (101), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 57/134 (42%), Gaps = 15/134 (11%)
Query: 94 VHCPVPALPLNGHLIEDPTGGPYRVGAILQFACNDRHHLLGEETIVCTET----GRWSRA 149
+ C P LNG + T P VG +++++C+ L+GE++++C G W +
Sbjct: 3 ISCGSPPPILNGRISYYST--PIAVGTVIRYSCSGTFRLIGEKSLLCITKDKVDGTWDKP 60
Query: 150 PPRCKARCEYPGEPQ----NGKIIPLKFFYDPGDHIQVTCNDGYVKPLDITPTSGPYCQS 205
P+C+ +Y P+ G I Y GD + C + + +CQ+
Sbjct: 61 APKCEYFNKYSSCPEPIVPGGYKIRGSTPYRHGDSVTFACKTNF----SMNGNKSVWCQA 116
Query: 206 DGTWS-LDIPHCTN 218
+ W +P C +
Sbjct: 117 NNMWGPTRLPTCVS 130
Score = 26.9 bits (58), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 15/67 (22%), Positives = 22/67 (32%), Gaps = 4/67 (5%)
Query: 10 QGQWSGEVPTCQQI----ICPKIVVENPYLTLVEQNNTYRGHAIFQCSWGYQLKGPPDIV 65
G W P C+ CP+ +V Y + F C + + G +
Sbjct: 54 DGTWDKPAPKCEYFNKYSSCPEPIVPGGYKIRGSTPYRHGDSVTFACKTNFSMNGNKSVW 113
Query: 66 CQKNGSW 72
CQ N W
Sbjct: 114 CQANNMW 120
>pdb|1GHQ|B Chain B, Cr2-C3d Complex Structure
pdb|1GHQ|C Chain C, Cr2-C3d Complex Structure
Length = 134
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 57/134 (42%), Gaps = 15/134 (11%)
Query: 94 VHCPVPALPLNGHLIEDPTGGPYRVGAILQFACNDRHHLLGEETIVCTET----GRWSRA 149
+ C P LNG + T P VG +++++C+ L+GE++++C G W +
Sbjct: 2 ISCGSPPPILNGRISYYST--PIAVGTVIRYSCSGTFRLIGEKSLLCITKDKVDGTWDKP 59
Query: 150 PPRCKARCEYPGEPQ----NGKIIPLKFFYDPGDHIQVTCNDGYVKPLDITPTSGPYCQS 205
P+C+ +Y P+ G I Y GD + C + + +CQ+
Sbjct: 60 APKCEYFNKYSSCPEPIVPGGYKIRGSTPYRHGDSVTFACKTNF----SMNGNKSVWCQA 115
Query: 206 DGTWS-LDIPHCTN 218
+ W +P C +
Sbjct: 116 NNMWGPTRLPTCVS 129
Score = 26.9 bits (58), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 15/67 (22%), Positives = 22/67 (32%), Gaps = 4/67 (5%)
Query: 10 QGQWSGEVPTCQQI----ICPKIVVENPYLTLVEQNNTYRGHAIFQCSWGYQLKGPPDIV 65
G W P C+ CP+ +V Y + F C + + G +
Sbjct: 53 DGTWDKPAPKCEYFNKYSSCPEPIVPGGYKIRGSTPYRHGDSVTFACKTNFSMNGNKSVW 112
Query: 66 CQKNGSW 72
CQ N W
Sbjct: 113 CQANNMW 119
>pdb|2QFH|A Chain A, Solution Structure Of The C-Terminal Scr-1620 FRAGMENT OF
Complement Factor H
Length = 333
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/178 (21%), Positives = 70/178 (39%), Gaps = 23/178 (12%)
Query: 18 PTCQQIICPKIVVENPYLTLVEQNNTYRG--HAIFQCSWGYQLKGPPDIVCQKNGSWSGA 75
P+C + C + + + E+ + Y+ + C+ Y++ G ++ C N W+G
Sbjct: 61 PSCIKTDCLSLPSFENAIPMGEKKDVYKAGEQVTYTCATYYKMDGASNVTC-INSRWTGR 119
Query: 76 IPECNAXXXXXXXXXXNPVHCPVPALPLNGHLIEDPTGGPYRVGAILQFACNDRHHLLGE 135
P C C P N +++ Y G +++ C + + G+
Sbjct: 120 -PTCRD------------TSCVNPPTVQNAYIVSRQMSK-YPSGERVRYQCRSPYEMFGD 165
Query: 136 ETIVCTETGRWSRAPPRCK---ARCEYPGEPQNGKIIPLKF-FYDPGDHIQVTCNDGY 189
E ++C G W+ PP+CK +C P NG I Y P ++ C + Y
Sbjct: 166 EEVMCL-NGNWTE-PPQCKDSTGKCGPPPPIDNGDITSFPLSVYAPASSVEYQCQNLY 221
>pdb|1LY2|A Chain A, Crystal Structure Of Unliganded Human Cd21 Scr1-Scr2
(Complement Receptor Type 2)
Length = 130
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 56/134 (41%), Gaps = 15/134 (11%)
Query: 94 VHCPVPALPLNGHLIEDPTGGPYRVGAILQFACNDRHHLLGEETIVCTET----GRWSRA 149
C P LNG + T P VG +++++C+ L+GE++++C G W +
Sbjct: 2 ASCGSPPPILNGRISYYST--PIAVGTVIRYSCSGTFRLIGEKSLLCITKDKVDGTWDKP 59
Query: 150 PPRCKARCEYPGEPQ----NGKIIPLKFFYDPGDHIQVTCNDGYVKPLDITPTSGPYCQS 205
P+C+ +Y P+ G I Y GD + C + + +CQ+
Sbjct: 60 APKCEYFNKYSSCPEPIVPGGYKIRGSTPYRHGDSVTFACKTNF----SMNGNKSVWCQA 115
Query: 206 DGTWS-LDIPHCTN 218
+ W +P C +
Sbjct: 116 NNMWGPTRLPTCVS 129
Score = 26.9 bits (58), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 15/67 (22%), Positives = 22/67 (32%), Gaps = 4/67 (5%)
Query: 10 QGQWSGEVPTCQQI----ICPKIVVENPYLTLVEQNNTYRGHAIFQCSWGYQLKGPPDIV 65
G W P C+ CP+ +V Y + F C + + G +
Sbjct: 53 DGTWDKPAPKCEYFNKYSSCPEPIVPGGYKIRGSTPYRHGDSVTFACKTNFSMNGNKSVW 112
Query: 66 CQKNGSW 72
CQ N W
Sbjct: 113 CQANNMW 119
>pdb|2A55|A Chain A, Solution Structure Of The Two N-Terminal Ccp Modules Of
C4b- Binding Protein (C4bp) Alpha-Chain
Length = 133
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 53/124 (42%), Gaps = 9/124 (7%)
Query: 97 PVPALPLNGHLIEDPTGGPYRVGAILQFAC---NDRHHLLGEETIVCTETGRWSRAPPRC 153
P P L + T ++ G L++ C R H +T+ C G W
Sbjct: 5 PPPTLSFAAPMDITLTETRFKTGTTLKYTCLPGYVRSH--STQTLTCNSDGEWVYNTFCI 62
Query: 154 KARCEYPGEPQNGKIIPLKFFYDPGDHIQVTCNDGYVKPLDITPTSGPYCQSDGT-WSLD 212
RC +PGE +NG+ + +K G I+ +C++G+ L + TS Q G WS
Sbjct: 63 YKRCRHPGELRNGQ-VEIKTDLSFGSQIEFSCSEGFF--LIGSTTSRCEVQDRGVGWSHP 119
Query: 213 IPHC 216
+P C
Sbjct: 120 LPQC 123
>pdb|1NWV|A Chain A, Solution Structure Of A Functionally Active Component Of
Decay Accelerating Factor
pdb|2QZH|A Chain A, Scr23 OF DAF FROM THE NMR STRUCTURE 1NWV FITTED INTO A
Cryoem Reconstruction Of Cvb3-Rd Complexed With Daf
Length = 129
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 60/133 (45%), Gaps = 16/133 (12%)
Query: 96 CPVPALPLNGHLIEDP--TGGPYRVGAILQFACND--RHHLLGEETIVCTETGRWSRAPP 151
C VP LN ++ P T + VG ++++ C R + C + +WS A
Sbjct: 4 CEVPTR-LNSASLKQPYITQNYFPVGTVVEYECRPGYRREPSLSPKLTCLQNLKWSTAVE 62
Query: 152 RCKAR-CEYPGEPQNGKI-IPLKFFYDPGDHIQVTCNDGYVKPLDITPTSGPYCQSDGT- 208
CK + C PGE +NG+I +P + G I +CN GY + ++ +C G+
Sbjct: 63 FCKKKSCPNPGEIRNGQIDVPGGILF--GATISFSCNTGY----KLFGSTSSFCLISGSS 116
Query: 209 --WSLDIPHCTNY 219
WS +P C +
Sbjct: 117 VQWSDPLPECREH 129
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 56/131 (42%), Gaps = 24/131 (18%)
Query: 30 VENPYLTLVEQNNTYRGHAI-FQCSWGYQLK--GPPDIVCQKNGSWSGAIPECNAXXXXX 86
++ PY+T QN G + ++C GY+ + P + C +N WS A+ C
Sbjct: 15 LKQPYIT---QNYFPVGTVVEYECRPGYRREPSLSPKLTCLQNLKWSTAVEFCKKK---- 67
Query: 87 XXXXXNPVHCPVPALPLNGHLIEDPTGGPYRVGAILQFACNDRHHLLGEETIVCTETG-- 144
CP P NG + D GG GA + F+CN + L G + C +G
Sbjct: 68 --------SCPNPGEIRNGQI--DVPGG-ILFGATISFSCNTGYKLFGSTSSFCLISGSS 116
Query: 145 -RWSRAPPRCK 154
+WS P C+
Sbjct: 117 VQWSDPLPECR 127
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 29/72 (40%), Gaps = 3/72 (4%)
Query: 12 QWSGEVPTCQQIICPKIVVENPYLTLVEQNNTYRGHAIFQCSWGYQLKGPPDIVCQKNGS 71
+WS V C++ CP V + F C+ GY+L G C +GS
Sbjct: 56 KWSTAVEFCKKKSCPNPGEIRNGQIDVPGGILFGATISFSCNTGYKLFGSTSSFCLISGS 115
Query: 72 ---WSGAIPECN 80
WS +PEC
Sbjct: 116 SVQWSDPLPECR 127
>pdb|2ATY|A Chain A, Complement Receptor Chimaeric Conjugate Cr2-Ig
pdb|2ATY|B Chain B, Complement Receptor Chimaeric Conjugate Cr2-Ig
Length = 376
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 57/134 (42%), Gaps = 15/134 (11%)
Query: 94 VHCPVPALPLNGHLIEDPTGGPYRVGAILQFACNDRHHLLGEETIVCTET----GRWSRA 149
+ C P LNG + T P VG +++++C+ L+GE++++C G W +
Sbjct: 2 ISCGSPPPILNGRISYYST--PIAVGTVIRYSCSGTFRLIGEKSLLCITKDKVDGTWDKP 59
Query: 150 PPRCKARCEYPGEPQ----NGKIIPLKFFYDPGDHIQVTCNDGYVKPLDITPTSGPYCQS 205
P+C+ +Y P+ G I Y GD + C + + +CQ+
Sbjct: 60 APKCEYFNKYSSCPEPIVPGGYKIRGSTPYRHGDSVTFACKTNF----SMNGNKSVWCQA 115
Query: 206 DGTWS-LDIPHCTN 218
+ W +P C +
Sbjct: 116 NNMWGPTRLPTCVS 129
>pdb|1VVC|A Chain A, C-Terminal Half Of Vaccinia Virus Complement Control
Protein, Nmr, Minimized Average Structure
pdb|1VVD|A Chain A, C-Terminal Half Of Vaccinia Virus Complement Control
Protein, Nmr, 21 Structures
pdb|1VVE|A Chain A, C-Terminal Half Of Vaccinia Virus Complement Control
Protein, Nmr, 21 Structures
Length = 118
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Query: 9 SQGQWSGEVPTCQQIICPKIVVENPYLTL-VEQNNTYRGHAIFQCSWGYQLKGPPDIVCQ 67
S G+WS + PTCQ + CP + N YL+ +++ +Y + F+C +GY+L G C
Sbjct: 46 SGGEWS-DPPTCQIVKCPHPTISNGYLSSGFKRSYSYNDNVDFKCKYGYKLSGSSSSTCS 104
Query: 68 KNGSWSGAIPEC 79
+W +P+C
Sbjct: 105 PGNTWKPELPKC 116
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 7/102 (6%)
Query: 116 YRVGAILQFACNDRHHLLGEETIVCTETGRWSRAPPRCK-ARCEYPGEPQNGKIIPLKFF 174
Y G+++ ++CN + L+G ++C+ G WS PP C+ +C +P K
Sbjct: 21 YTDGSVVTYSCNSGYSLIGNSGVLCS-GGEWSD-PPTCQIVKCPHPTISNGYLSSGFKRS 78
Query: 175 YDPGDHIQVTCNDGYVKPLDITPTSGPYCQSDGTWSLDIPHC 216
Y D++ C GY + T P TW ++P C
Sbjct: 79 YSYNDNVDFKCKYGYKLSGSSSSTCSP----GNTWKPELPKC 116
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
Query: 155 ARCEYPGEPQNGKIIPLKFFYDPGDHIQVTCNDGYVKPLDITPTSGPYCQSDGTWSLDIP 214
+C+ P NG+ + FY G + +CN GY + SG C S G WS D P
Sbjct: 1 VKCQSPPSISNGRHNGYEDFYTDGSVVTYSCNSGY----SLIGNSGVLC-SGGEWS-DPP 54
Query: 215 HC 216
C
Sbjct: 55 TC 56
>pdb|3T5O|A Chain A, Crystal Structure Of Human Complement Component C6
pdb|4A5W|B Chain B, Crystal Structure Of C5b6
pdb|4E0S|B Chain B, Crystal Structure Of C5b-6
Length = 913
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 41/96 (42%), Gaps = 3/96 (3%)
Query: 96 CPVPALPLNGHLIEDPTGGPYRVGAILQFACNDRHHLLGEETIVCTETGRWSRAPPRC-K 154
CP P P NG + + Y VG ++ +C +G + C G W + C +
Sbjct: 623 CPQPVPPENGFIRNEKQ--LYLVGEDVEISCLTGFETVGYQYFRCLPDGTWRQGDVECQR 680
Query: 155 ARCEYPGEPQNGKIIPLKFFYDPGDHIQVTCNDGYV 190
C P + I P + Y G+ I++TC G+V
Sbjct: 681 TECIKPVVQEVLTITPFQRLYRIGESIELTCPKGFV 716
>pdb|4FXG|G Chain G, Complement C4 In Complex With Masp-2
pdb|4FXG|I Chain I, Complement C4 In Complex With Masp-2
Length = 154
Score = 36.6 bits (83), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 51/128 (39%), Gaps = 21/128 (16%)
Query: 96 CPVPALPLNGHLIEDPTGGPYRVGAILQFACNDRHHL------LGEETIVCTETGRWSRA 149
CP P P NGH+ P Y + C + L L T VC + G W R
Sbjct: 10 CPYPMAPPNGHV--SPVQAKYILKDSFSIFCETGYELLQGHLPLKSFTAVCQKDGSWDRP 67
Query: 150 PPRCK-ARCEYPGEPQNGKIIPLKFFYDPG-----DHIQVTCNDGYVKPLDITPTSGPY- 202
P C C P + +G++ ++ PG IQ +C + + + G Y
Sbjct: 68 MPACSIVDCGPPDDLPSGRV---EYITGPGVTTYKAVIQYSCEETF---YTMKVNDGKYV 121
Query: 203 CQSDGTWS 210
C++DG W+
Sbjct: 122 CEADGFWT 129
Score = 36.2 bits (82), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Query: 157 CEYPGEPQNGKIIPLKFFYDPGDHIQVTCNDGYVKPLDITPTSG--PYCQSDGTWSLDIP 214
C YP P NG + P++ Y D + C GY P CQ DG+W +P
Sbjct: 10 CPYPMAPPNGHVSPVQAKYILKDSFSIFCETGYELLQGHLPLKSFTAVCQKDGSWDRPMP 69
Query: 215 HCT 217
C+
Sbjct: 70 ACS 72
Score = 30.4 bits (67), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 58/150 (38%), Gaps = 27/150 (18%)
Query: 32 NPYLTLVEQNNTYRGHAIFQCSWGYQLK------GPPDIVCQKNGSWSGAIPECNAXXXX 85
N +++ V+ + C GY+L VCQK+GSW +P C+
Sbjct: 18 NGHVSPVQAKYILKDSFSIFCETGYELLQGHLPLKSFTAVCQKDGSWDRPMPACSI---- 73
Query: 86 XXXXXXNPVHCPVPALPLNGHLIEDPTG-GPYRVGAILQFACNDRHHLL--GEETIVCTE 142
V C P +G +E TG G A++Q++C + + + + VC
Sbjct: 74 --------VDCGPPDDLPSGR-VEYITGPGVTTYKAVIQYSCEETFYTMKVNDGKYVCEA 124
Query: 143 TGRWS-----RAPPRCKARCEYPGEPQNGK 167
G W+ ++ P C+ C G+
Sbjct: 125 DGFWTSSKGEKSLPVCEPVCGLSARTTGGR 154
>pdb|1ZJK|A Chain A, Crystal Structure Of The Zymogen Catalytic Region Of Human
Masp-2
Length = 403
Score = 36.6 bits (83), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 51/128 (39%), Gaps = 21/128 (16%)
Query: 96 CPVPALPLNGHLIEDPTGGPYRVGAILQFACNDRHHL------LGEETIVCTETGRWSRA 149
CP P P NGH+ P Y + C + L L T VC + G W R
Sbjct: 17 CPYPMAPPNGHV--SPVQAKYILKDSFSIFCETGYELLQGHLPLKSFTAVCQKDGSWDRP 74
Query: 150 PPRCK-ARCEYPGEPQNGKIIPLKFFYDPG-----DHIQVTCNDGYVKPLDITPTSGPY- 202
P C C P + +G++ ++ PG IQ +C + + + G Y
Sbjct: 75 MPACSIVDCGPPDDLPSGRV---EYITGPGVTTYKAVIQYSCEETFYT---MKVNDGKYV 128
Query: 203 CQSDGTWS 210
C++DG W+
Sbjct: 129 CEADGFWT 136
Score = 36.2 bits (82), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Query: 157 CEYPGEPQNGKIIPLKFFYDPGDHIQVTCNDGYVKPLDITPTSG--PYCQSDGTWSLDIP 214
C YP P NG + P++ Y D + C GY P CQ DG+W +P
Sbjct: 17 CPYPMAPPNGHVSPVQAKYILKDSFSIFCETGYELLQGHLPLKSFTAVCQKDGSWDRPMP 76
Query: 215 HCT 217
C+
Sbjct: 77 ACS 79
Score = 31.6 bits (70), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 47/112 (41%), Gaps = 21/112 (18%)
Query: 65 VCQKNGSWSGAIPECNAXXXXXXXXXXNPVHCPVPALPLNGHLIEDPTG-GPYRVGAILQ 123
VCQK+GSW +P C+ V C P +G +E TG G A++Q
Sbjct: 64 VCQKDGSWDRPMPACSI------------VDCGPPDDLPSGR-VEYITGPGVTTYKAVIQ 110
Query: 124 FACNDRHHLL--GEETIVCTETGRWS-----RAPPRCKARCEYPGEPQNGKI 168
++C + + + + VC G W+ ++ P C+ C G+I
Sbjct: 111 YSCEETFYTMKVNDGKYVCEADGFWTSSKGEKSLPVCEPVCGLSARTTGGQI 162
>pdb|2QZD|A Chain A, Fitted Structure Of Scr4 Of Daf Into Cryoem Density
Length = 65
Score = 36.6 bits (83), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Query: 94 VHCPVPALPLNGHLIEDPTGGPYRVGAILQFACNDRHHLLGEETIVCT---ETGRWSRAP 150
++CP P NG + + YR + +ACN ++GE +I CT + G WS P
Sbjct: 2 IYCPAPPQIDNGIIQGERDHYGYR--QSVTYACNKGFTMIGEHSIYCTVNNDEGEWSGPP 59
Query: 151 PRCKA 155
P C+
Sbjct: 60 PECRG 64
Score = 30.0 bits (66), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
Query: 22 QIICPKI-VVENPYLTLVEQNNTYRGHAIFQCSWGYQLKGPPDIVCQKN---GSWSGAIP 77
+I CP ++N + + YR + C+ G+ + G I C N G WSG P
Sbjct: 1 EIYCPAPPQIDNGIIQGERDHYGYRQSVTYACNKGFTMIGEHSIYCTVNNDEGEWSGPPP 60
Query: 78 ECNA 81
EC
Sbjct: 61 ECRG 64
>pdb|1GKN|A Chain A, Structure Determination And Rational Mutagenesis Reveal
Binding Surface Of Immune Adherence Receptor, Cr1 (Cd35)
Length = 128
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 39/99 (39%), Gaps = 22/99 (22%)
Query: 61 PPDIVCQKNGSWSGAIPECNAXXXXXXXXXXNPVHCPVPALPLNG--HLIEDPTGGPYRV 118
P I C N WS C C P P+NG H+I D +V
Sbjct: 44 PFSITCLDNLVWSSPKDVCKRKS------------CKTPPDPVNGMVHVITD-----IQV 86
Query: 119 GAILQFACNDRHHLLGE---ETIVCTETGRWSRAPPRCK 154
G+ + ++C H L+G E I+ T WS PP C+
Sbjct: 87 GSRITYSCTTGHRLIGHSSAECILSGNTAHWSTKPPICQ 125
Score = 31.6 bits (70), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 40/98 (40%), Gaps = 5/98 (5%)
Query: 94 VHCPVPALPLNGHLIEDPTGGPYRVGAILQFACNDRHHLLGEE-TIVCTETGRWSRAPPR 152
HC P L L T + +G L++ C R G +I C + WS
Sbjct: 4 AHCQAPDHFLFAKLKTQTTASDFPIGTSLKYEC--RPEYYGRPFSITCLDNLVWSSPKDV 61
Query: 153 CKAR-CEYPGEPQNGKIIPLKFFYDPGDHIQVTCNDGY 189
CK + C+ P +P NG ++ + G I +C G+
Sbjct: 62 CKRKSCKTPPDPVNG-MVHVITDIQVGSRITYSCTTGH 98
>pdb|2QY0|A Chain A, Active Dimeric Structure Of The Catalytic Domain Of C1r
Reveals Enzyme-product Like Contacts
pdb|2QY0|C Chain C, Active Dimeric Structure Of The Catalytic Domain Of C1r
Reveals Enzyme-product Like Contacts
Length = 159
Score = 35.8 bits (81), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 54/158 (34%), Gaps = 32/158 (20%)
Query: 26 PKIVVENPYLTLVEQNNTYRGHAIFQCSWGYQLKGPPDI------VCQKNGSWSGAIPEC 79
PK + E + ++ +R + I C GYQL + VCQ +G+W A+P C
Sbjct: 8 PKTLDEFTIIQNLQPQYQFRDYFIATCKQGYQLIEGNQVLHSFTAVCQDDGTWHRAMPRC 67
Query: 80 NAXXXXXXXXXXNPVHCPVPALPLNGHLIEDPTGGPYRVGAILQFACNDRHHLLGEET-- 137
C P NG T G A +Q+ C++ ++ +
Sbjct: 68 KIK------------DCGQPRNLPNGDFRYTTTMGVNTYKARIQYYCHEPYYKMQTRAGS 115
Query: 138 -------IVCTETGRWSRAP-----PRCKARCEYPGEP 163
CT G W PRC C P P
Sbjct: 116 RESEQGVYTCTAQGIWKNEQKGEKIPRCLPVCGKPVNP 153
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 43/103 (41%), Gaps = 19/103 (18%)
Query: 130 HHLLGEETIVCTETGRWSRAPPRCKAR-CEYPGEPQNGKIIPLKFFYDPG-----DHIQV 183
+ +L T VC + G W RA PRCK + C G+P+N ++ G IQ
Sbjct: 44 NQVLHSFTAVCQDDGTWHRAMPRCKIKDC---GQPRNLPNGDFRYTTTMGVNTYKARIQY 100
Query: 184 TCNDGYVKPLDITPT----SGPY-CQSDGTWSLD-----IPHC 216
C++ Y K + G Y C + G W + IP C
Sbjct: 101 YCHEPYYKMQTRAGSRESEQGVYTCTAQGIWKNEQKGEKIPRC 143
>pdb|1PPQ|A Chain A, Nmr Structure Of 16th Module Of Immune Adherence Receptor,
Cr1 (Cd35)
Length = 68
Score = 35.8 bits (81), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 10/64 (15%)
Query: 96 CPVPALPLNG--HLIEDPTGGPYRVGAILQFACNDRHHLLGE---ETIVCTETGRWSRAP 150
C P P+NG H+I D +VG+ + ++C H L+G E I+ T WS P
Sbjct: 7 CKTPPDPVNGMVHVITD-----IQVGSRITYSCTTGHRLIGHSSAECILSGNTAHWSTKP 61
Query: 151 PRCK 154
P C+
Sbjct: 62 PICQ 65
>pdb|1GPZ|A Chain A, The Crystal Structure Of The Zymogen Catalytic Domain Of
Complement Protease C1r
pdb|1GPZ|B Chain B, The Crystal Structure Of The Zymogen Catalytic Domain Of
Complement Protease C1r
Length = 399
Score = 35.0 bits (79), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 57/158 (36%), Gaps = 32/158 (20%)
Query: 26 PKIVVENPYLTLVEQNNTYRGHAIFQCSWGYQLKGPPDI------VCQKNGSWSGAIPEC 79
PK + E + ++ +R + I C GYQL + VCQ +G+W A+P C
Sbjct: 6 PKTLDEFTIIQNLQPQYQFRDYFIATCKQGYQLIEGNQVLHSFTAVCQDDGTWHRAMPRC 65
Query: 80 NAXXXXXXXXXXNPVHCPVPALPLNGHLIEDPTGGPYRVGAILQFACNDRHHLL------ 133
C P NG T G A +Q+ C++ ++ +
Sbjct: 66 KIK------------DCGQPRNLPNGDFRYTTTMGVNTYKARIQYYCHEPYYKMQTRAGS 113
Query: 134 --GEETI-VCTETGRWSRAP-----PRCKARCEYPGEP 163
E+ + CT G W PRC C P P
Sbjct: 114 RESEQGVYTCTAQGIWKNEQKGEKIPRCLPVCGKPVNP 151
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
Query: 130 HHLLGEETIVCTETGRWSRAPPRCKAR-CEYPGEPQN 165
+ +L T VC + G W RA PRCK + C G+P+N
Sbjct: 42 NQVLHSFTAVCQDDGTWHRAMPRCKIKDC---GQPRN 75
>pdb|2EHF|A Chain A, Solution Structure Of The Third Sushi Domain From Human
Cub And Sushi Domain-Containing Protein 1
Length = 73
Score = 34.7 bits (78), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 24/60 (40%), Gaps = 4/60 (6%)
Query: 96 CPVPALPLNGHLIEDPTGGPYRVGAILQFACNDRHHLLGEETIVCTETGRWSRAPPRCKA 155
C P +P G TG + G L F C L+GE I C + +WS P C
Sbjct: 14 CGDPGIPAYGKR----TGSSFLHGDTLTFECPAAFELVGERVITCQQNNQWSGNKPSCSG 69
Score = 31.6 bits (70), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 49 IFQCSWGYQLKGPPDIVCQKNGSWSGAIPECNA 81
F+C ++L G I CQ+N WSG P C+
Sbjct: 37 TFECPAAFELVGERVITCQQNNQWSGNKPSCSG 69
>pdb|3GOV|A Chain A, Crystal Structure Of The Catalytic Region Of Human Masp-1
pdb|4DJZ|A Chain A, Catalytic Fragment Of Masp-1 In Complex With Its Specific
Inhibitor Developed By Directed Evolution On Sgci
Scaffold
pdb|4DJZ|C Chain C, Catalytic Fragment Of Masp-1 In Complex With Its Specific
Inhibitor Developed By Directed Evolution On Sgci
Scaffold
Length = 155
Score = 34.7 bits (78), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 163 PQNGKIIPLKFFYDPGDHIQVTCNDGY--VKPLDITPTSGPYCQSDGTWSLDIPHC 216
P +GKI P + Y D + V+C+ GY +K T C DGTWS IP C
Sbjct: 14 PVHGKIEPSQAKYFFKDQVLVSCDTGYKVLKDNVEMDTFQIECLKDGTWSNKIPTC 69
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 29/131 (22%), Positives = 50/131 (38%), Gaps = 26/131 (19%)
Query: 44 YRGHAIFQCSWGYQ-LKGPPD-----IVCQKNGSWSGAIPECNAXXXXXXXXXXNPVHCP 97
++ + C GY+ LK + I C K+G+WS IP C V C
Sbjct: 28 FKDQVLVSCDTGYKVLKDNVEMDTFQIECLKDGTWSNKIPTCKI------------VDCR 75
Query: 98 VPALPLNGHLIEDPTGGPYRVGAILQFACNDRHH-LLGEETIV--CTETGRW-----SRA 149
P +G + + ++++C + ++ +L T + C+ G W R+
Sbjct: 76 APGELEHGLITFSTRNNLTTYKSEIKYSCQEPYYKMLNNNTGIYTCSAQGVWMNKVLGRS 135
Query: 150 PPRCKARCEYP 160
P C C P
Sbjct: 136 LPTCLPVCGLP 146
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 6/75 (8%)
Query: 8 VSQGQWSGEVPTCQQIICPK-IVVENPYLTLVEQNN--TYRGHAIFQCSWGY--QLKGPP 62
+ G WS ++PTC+ + C +E+ +T +NN TY+ + C Y L
Sbjct: 57 LKDGTWSNKIPTCKIVDCRAPGELEHGLITFSTRNNLTTYKSEIKYSCQEPYYKMLNNNT 116
Query: 63 DI-VCQKNGSWSGAI 76
I C G W +
Sbjct: 117 GIYTCSAQGVWMNKV 131
>pdb|4IGD|A Chain A, Crystal Structure Of The Zymogen Catalytic Region Of Human
Masp-1
Length = 406
Score = 34.3 bits (77), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 163 PQNGKIIPLKFFYDPGDHIQVTCNDGY--VKPLDITPTSGPYCQSDGTWSLDIPHC 216
P +GKI P + Y D + V+C+ GY +K T C DGTWS IP C
Sbjct: 14 PVHGKIEPSQAKYFFKDQVLVSCDTGYKVLKDNVEMDTFQIECLKDGTWSNKIPTC 69
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 29/131 (22%), Positives = 50/131 (38%), Gaps = 26/131 (19%)
Query: 44 YRGHAIFQCSWGYQ-LKGPPD-----IVCQKNGSWSGAIPECNAXXXXXXXXXXNPVHCP 97
++ + C GY+ LK + I C K+G+WS IP C V C
Sbjct: 28 FKDQVLVSCDTGYKVLKDNVEMDTFQIECLKDGTWSNKIPTCKI------------VDCR 75
Query: 98 VPALPLNGHLIEDPTGGPYRVGAILQFACNDRHH-LLGEETIV--CTETGRW-----SRA 149
P +G + + ++++C + ++ +L T + C+ G W R+
Sbjct: 76 APGELEHGLITFSTRNNLTTYKSEIKYSCQEPYYKMLNNNTGIYTCSAQGVWMNKVLGRS 135
Query: 150 PPRCKARCEYP 160
P C C P
Sbjct: 136 LPTCLPVCGLP 146
Score = 27.7 bits (60), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 6/75 (8%)
Query: 8 VSQGQWSGEVPTCQQIICPK-IVVENPYLTLVEQNN--TYRGHAIFQCSWGY--QLKGPP 62
+ G WS ++PTC+ + C +E+ +T +NN TY+ + C Y L
Sbjct: 57 LKDGTWSNKIPTCKIVDCRAPGELEHGLITFSTRNNLTTYKSEIKYSCQEPYYKMLNNNT 116
Query: 63 DI-VCQKNGSWSGAI 76
I C G W +
Sbjct: 117 GIYTCSAQGVWMNKV 131
>pdb|4AQB|A Chain A, Mbl-Ficolin Associated Protein-1, Map-1 Aka Map44
Length = 361
Score = 33.9 bits (76), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 163 PQNGKIIPLKFFYDPGDHIQVTCNDGY--VKPLDITPTSGPYCQSDGTWSLDIPHC 216
P +GKI P + Y D + V+C+ GY +K T C DGTWS IP C
Sbjct: 288 PVHGKIEPSQAKYFFKDQVLVSCDTGYKVLKDNVEMDTFQIECLKDGTWSNKIPTC 343
Score = 26.9 bits (58), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 6/44 (13%)
Query: 44 YRGHAIFQCSWGYQ-LKGPPD-----IVCQKNGSWSGAIPECNA 81
++ + C GY+ LK + I C K+G+WS IP C
Sbjct: 302 FKDQVLVSCDTGYKVLKDNVEMDTFQIECLKDGTWSNKIPTCKK 345
>pdb|3SW0|X Chain X, Structure Of The C-terminal Region (modules 18-20) Of
Complement Regulator Factor H
Length = 188
Score = 33.5 bits (75), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 41/100 (41%), Gaps = 7/100 (7%)
Query: 94 VHCPVPALPLNGHLIEDPTGGPYRVGAILQFACNDRHHLLGEETIVCTETGRWSRAPPRC 153
C P N +++ Y G +++ C + + G+E ++C G W+ PP+C
Sbjct: 3 TSCVNPPTVQNAYIVSRQMSK-YPSGERVRYQCRSPYEMFGDEEVMCL-NGNWTE-PPQC 59
Query: 154 K---ARCEYPGEPQNGKIIPLKF-FYDPGDHIQVTCNDGY 189
K +C P NG I Y P ++ C + Y
Sbjct: 60 KDSTGKCGPPPPIDNGDITSFPLSVYAPASSVEYQCQNLY 99
>pdb|4B2R|A Chain A, Solution Structure Of Ccp Modules 10-11 Of Complement
Factor H
Length = 126
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 7/100 (7%)
Query: 95 HCPVPALPLNGHLIEDPTGGPYRVGAILQFACNDRHHLLGEETIVCTETGRWSRAPPRCK 154
C +P + + HL+ D Y+VG +L+F+C ++G ++ C G S P CK
Sbjct: 7 ECELPKIDV--HLVPDRKKDQYKVGEVLKFSCKPGFTIVGPNSVQCYHFG-LSPDLPICK 63
Query: 155 AR---CEYPGEPQNGKII-PLKFFYDPGDHIQVTCNDGYV 190
+ C P E NG + K Y + ++ CN ++
Sbjct: 64 EQVQSCGPPPELLNGNVKEKTKEEYGHSEVVEYYCNPRFL 103
Score = 31.2 bits (69), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 41/101 (40%), Gaps = 13/101 (12%)
Query: 50 FQCSWGYQLKGPPDIVCQKNGSWSGAIPECNAXXXXXXXXXXNPVHCPVPALPLNGHLIE 109
F C G+ + GP + C G S +P C C P LNG+ ++
Sbjct: 34 FSCKPGFTIVGPNSVQCYHFG-LSPDLPICKEQVQS----------CGPPPELLNGN-VK 81
Query: 110 DPTGGPYRVGAILQFACNDRHHLLGEETIVCTETGRWSRAP 150
+ T Y ++++ CN R + G I C + G W+ P
Sbjct: 82 EKTKEEYGHSEVVEYYCNPRFLMKGPNKIQCVD-GEWTTLP 121
>pdb|2RLP|A Chain A, Nmr Structure Of Ccp Modules 1-2 Of Complement Factor H
Length = 129
Score = 32.7 bits (73), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 41/108 (37%), Gaps = 12/108 (11%)
Query: 47 HAIFQCSWGYQLKGPPDIVCQKNGSWSGAIPECNAXXXXXXXXXXNPVHCPVPALPLNGH 106
AI++C GY+ G +VC+K G W P +P P L G
Sbjct: 34 QAIYKCRPGYRSLGNVIMVCRK-GEWVALNP----LRKCQKRPCGHPGDTPFGTFTLTG- 87
Query: 107 LIEDPTGGPYRVGAILQFACNDRHHLLGEETIVCTETGRWSRAPPRCK 154
G + G + CN+ + LLGE +T W+ P C+
Sbjct: 88 ------GNVFEYGVKAVYTCNEGYQLLGEINYRECDTDGWTNDIPICE 129
>pdb|1SRZ|A Chain A, Solution Structure Of The Second Complement Control
Protein (Ccp) Module Of The Gaba(B)r1a Receptor, Pro-119
Trans Conformer
pdb|1SS2|A Chain A, Solution Structure Of The Second Complement Control
Protein (Ccp) Module Of The Gaba(B)r1a Receptor, Pro-119
Cis Conformer
Length = 68
Score = 32.0 bits (71), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 112 TGG--PYRVGAILQFACNDRHHLLGEETIVCTETGRWSRAPPRCKA 155
TGG P GA ++F C+ HL+G VC++ G+WS P C+
Sbjct: 23 TGGDLPALDGARVEFRCDPDFHLVGSSRSVCSQ-GQWSTPKPHCQV 67
>pdb|2YRA|A Chain A, Solution Structure Of The Zinc Finger Domains (1-87) From
Human F-Box Only Protein
Length = 74
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 119 GAILQFACNDRHHLLGEETIVCTETGRWSRAPPRCKARCE 158
GA + + C+ + ++G +T+ C WS PP C+ E
Sbjct: 29 GARITYQCDPGYDIVGSDTLTCQWDLSWSSDPPFCEKTEE 68
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 21/51 (41%)
Query: 30 VENPYLTLVEQNNTYRGHAIFQCSWGYQLKGPPDIVCQKNGSWSGAIPECN 80
++N + T +QC GY + G + CQ + SWS P C
Sbjct: 14 IQNGWKTTSHTELVRGARITYQCDPGYDIVGSDTLTCQWDLSWSSDPPFCE 64
>pdb|4B2S|A Chain A, Solution Structure Of Ccp Modules 11-12 Of Complement
Factor H
Length = 127
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 47/115 (40%), Gaps = 18/115 (15%)
Query: 39 EQNNTYRGHAI---FQCSWGYQLKGPPDIVCQKNGSWSGAIPECNAXXXXXXXXXXNPVH 95
E+ GH+ + C+ + +KGP I C +G W+ +P C
Sbjct: 23 EKTKEEYGHSEVVEYYCNPRFLMKGPNKIQC-VDGEWT-TLPVCIVEESTCGD------- 73
Query: 96 CPVPALPLNGHLIEDPTGGPYRVGAILQFACNDRHHLLGEETIVCTETGRWSRAP 150
+P L + P PY G ++F C++ ++G +I C G W++ P
Sbjct: 74 --IPELEHGWAQLSSP---PYYYGDSVEFNCSESFTMIGHRSITCIH-GVWTQLP 122
>pdb|3POB|A Chain A, Crystal Structure Of Masp-1 Cub2 Domain In Complex With
The Collagen- Like Domain Of Mbl
pdb|3POE|A Chain A, Crystal Structure Of The Masp-1 Cub2 Domain Bound To Ca2+
pdb|3POF|A Chain A, Crystal Structure Of Masp-1 Cub2 Domain Bound To Ca2+
pdb|3POF|B Chain B, Crystal Structure Of Masp-1 Cub2 Domain Bound To Ca2+
pdb|3POG|A Chain A, Crystal Structure Of The Masp-1 Cub2 Domain Bound To Ca2+
pdb|3POG|B Chain B, Crystal Structure Of The Masp-1 Cub2 Domain Bound To Ca2+
pdb|3POG|C Chain C, Crystal Structure Of The Masp-1 Cub2 Domain Bound To Ca2+
pdb|3POI|A Chain A, Crystal Structure Of Masp-1 Cub2 Domain Bound To
Methylamine
pdb|3POI|B Chain B, Crystal Structure Of Masp-1 Cub2 Domain Bound To
Methylamine
pdb|3POJ|A Chain A, Crystal Structure Of Masp-1 Cub2 Domain Bound To
Ethylamine
pdb|3POJ|B Chain B, Crystal Structure Of Masp-1 Cub2 Domain Bound To
Ethylamine
Length = 115
Score = 27.7 bits (60), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 155 ARCEYPGEPQNGKIIPLKF--FYDPGDHIQVTCNDGYVKPLDITPTSGPYC 203
+ C Y + + G ++ L+F +D DH +V C Y+K + GP+C
Sbjct: 29 SECSYTIDLEEGFMVTLQFEDIFDIEDHPEVPCPYDYIKIKAGSKVWGPFC 79
>pdb|2KMS|A Chain A, Combined High- And Low-Resolution Techniques Reveal
Compact Structure In Central Portion Of Factor H Despite
Long Inter-Modular Linkers
Length = 115
Score = 26.9 bits (58), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 115 PYRVGAILQFACNDRHHLLGEETIVCTETGRWSRAP 150
PY G ++F C++ ++G +I C G W++ P
Sbjct: 19 PYYYGDSVEFNCSESFTMIGHRSITCIH-GVWTQLP 53
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.140 0.485
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,312,603
Number of Sequences: 62578
Number of extensions: 365134
Number of successful extensions: 894
Number of sequences better than 100.0: 67
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 475
Number of HSP's gapped (non-prelim): 214
length of query: 222
length of database: 14,973,337
effective HSP length: 95
effective length of query: 127
effective length of database: 9,028,427
effective search space: 1146610229
effective search space used: 1146610229
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)