Query psy14531
Match_columns 222
No_of_seqs 142 out of 1377
Neff 9.1
Searched_HMMs 46136
Date Fri Aug 16 22:15:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14531.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14531hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PHA02927 secreted complement-b 100.0 7.8E-39 1.7E-43 261.6 20.6 191 3-218 66-263 (263)
2 PHA02639 EEV host range protei 100.0 5.6E-36 1.2E-40 246.0 19.5 183 19-220 16-209 (295)
3 PHA02927 secreted complement-b 100.0 1.7E-32 3.7E-37 224.2 17.1 178 19-220 15-205 (263)
4 PHA02954 EEV membrane glycopro 100.0 2.6E-31 5.7E-36 219.6 17.6 181 4-221 58-242 (317)
5 PHA02831 EEV host range protei 100.0 4E-31 8.6E-36 213.3 16.2 159 38-220 36-199 (268)
6 PHA02639 EEV host range protei 100.0 2E-27 4.3E-32 195.5 15.6 144 3-159 60-211 (295)
7 PHA02831 EEV host range protei 100.0 2.5E-27 5.5E-32 191.2 14.1 145 4-167 58-209 (268)
8 PHA02954 EEV membrane glycopro 99.9 5.7E-27 1.2E-31 193.8 15.1 168 18-219 14-185 (317)
9 PHA02817 EEV Host range protei 99.9 5E-25 1.1E-29 173.5 12.6 125 18-155 17-147 (225)
10 PHA02817 EEV Host range protei 99.9 5.6E-24 1.2E-28 167.6 13.1 120 94-220 22-149 (225)
11 cd00033 CCP Complement control 99.3 1.1E-11 2.4E-16 77.4 6.3 56 25-80 1-57 (57)
12 smart00032 CCP Domain abundant 99.3 1.5E-11 3.2E-16 76.7 6.2 55 25-79 1-57 (57)
13 PF00084 Sushi: Sushi domain ( 99.3 4.7E-12 1E-16 78.9 3.9 55 25-79 1-56 (56)
14 cd00033 CCP Complement control 99.3 1.5E-11 3.3E-16 76.7 5.9 57 157-217 1-57 (57)
15 smart00032 CCP Domain abundant 99.2 3.3E-11 7.1E-16 75.1 6.8 57 96-153 1-57 (57)
16 PF00084 Sushi: Sushi domain ( 99.2 7.4E-12 1.6E-16 78.0 3.2 56 157-216 1-56 (56)
17 PF14704 DERM: Dermatopontin 92.6 1.3 2.7E-05 33.3 8.5 137 43-210 2-144 (152)
18 smart00008 HormR Domain presen 88.6 0.46 1E-05 30.6 2.6 33 116-148 18-53 (70)
19 PF02793 HRM: Hormone receptor 86.9 0.47 1E-05 30.1 1.8 33 117-149 18-55 (66)
20 smart00008 HormR Domain presen 84.8 1.2 2.5E-05 28.7 2.9 42 176-218 19-63 (70)
21 PF02793 HRM: Hormone receptor 79.6 0.99 2.1E-05 28.6 1.1 36 176-211 18-54 (66)
22 PF14704 DERM: Dermatopontin 68.4 16 0.00034 27.4 5.3 94 41-157 55-152 (152)
23 KOG4564|consensus 53.8 15 0.00031 32.9 3.3 44 117-161 78-131 (473)
24 PF12662 cEGF: Complement Clr- 53.6 10 0.00022 18.9 1.4 17 183-204 4-20 (24)
25 KOG4564|consensus 51.8 19 0.0004 32.3 3.6 34 44-77 79-117 (473)
26 PF09014 Sushi_2: Beta-2-glyco 47.7 4.8 0.0001 26.9 -0.5 38 173-216 28-65 (85)
27 PF03436 DUF281: Domain of unk 43.5 20 0.00044 22.5 1.9 14 135-148 48-61 (62)
No 1
>PHA02927 secreted complement-binding protein; Provisional
Probab=100.00 E-value=7.8e-39 Score=261.60 Aligned_cols=191 Identities=27% Similarity=0.623 Sum_probs=168.4
Q ss_pred CceEeccCCccCCCCCeeEEeeCCCCcc-CCCeEEeccCCcccccEEEEEcCCCCeEeCCCceEeCCCC----eeeCCCC
Q psy14531 3 HPVFRVSQGQWSGEVPTCQQIICPKIVV-ENPYLTLVEQNNTYRGHAIFQCSWGYQLKGPPDIVCQKNG----SWSGAIP 77 (222)
Q Consensus 3 ~~~~c~~~g~Ws~~~p~C~~~~C~~p~~-~ng~~~~~~~~~~~g~~~~~~C~~gy~l~G~~~~~C~~~g----~W~~~~p 77 (222)
..++|+.+| |+. .|.|+++.|+.|+. +||.+.. ..+.+|++|+|+|++||.|.|...++|+.++ +|+.+.|
T Consensus 66 ~~~~C~~~g-Ws~-~p~C~~~~C~~p~~i~NG~~~~--~~~~~G~~v~y~C~~Gy~l~G~~~~~C~~~~~g~~~Ws~~~P 141 (263)
T PHA02927 66 IYAKCTGTG-WTL-FNQCIKRRCPSPRDIDNGQLDI--GGVDFGSSITYSCNSGYQLIGESKSYCELGSTGSMVWNPEAP 141 (263)
T ss_pred cEEEecCCC-CCC-CCcEEeCCCcCCCCCCCCEEeC--CCccCCCEEEEECCCCCEEcCCCeeEEEeCCCCcceECCCCC
Confidence 357899877 995 68999999999987 9999875 4578999999999999999999999998753 7999999
Q ss_pred ceeccceeeeecccccccCCCCCCCCCceEEeCCCCCCcCCCCEEEEEcCCCCEEcCCCeEEeCcCCeeeCCCCcee-ec
Q psy14531 78 ECNAFFFFFFFFFFNPVHCPVPALPLNGHLIEDPTGGPYRVGAILQFACNDRHHLLGEETIVCTETGRWSRAPPRCK-AR 156 (222)
Q Consensus 78 ~C~~~~~~~~~~~~~~~~C~~p~~~~~g~~~~~~~~~~~~~g~~~~~~C~~gy~~~g~~~~~C~~~g~Ws~~~p~C~-~~ 156 (222)
.|+. +.|+.|+.+.||.+.. ....|.+|++|+|.|+.||.|.|...++|+ +|+|+. +|.|+ +.
T Consensus 142 ~C~~------------~~C~~P~~~~nG~~~~--~~~~y~~g~~v~y~C~~Gy~l~G~~~~~C~-~G~Ws~-~P~C~~v~ 205 (263)
T PHA02927 142 ICES------------VKCQSPPSISNGRHNG--YEDFYTDGSVVTYSCNSGYSLIGNSGVLCS-GGEWSD-PPTCQIVK 205 (263)
T ss_pred cccc------------ccCCCCCCCCCcEEcC--CcccccCCCEEEEECCCCCEECCCCeeEEC-CCccCC-CCeEeEeE
Confidence 9999 8999999999998753 245688999999999999999999999997 899997 79999 79
Q ss_pred CCCCCCCCCeEEec-CccccCCCCeEEEEcCCCCeeccCCCCCCcceeCCCCcccCCCCceee
Q psy14531 157 CEYPGEPQNGKIIP-LKFFYDPGDHIQVTCNDGYVKPLDITPTSGPYCQSDGTWSLDIPHCTN 218 (222)
Q Consensus 157 C~~p~~~~~g~~~~-~~~~~~~g~~v~y~C~~gy~~~~~~~~~~~~~C~~~G~W~~~~p~C~~ 218 (222)
|..|. +.||.+.. .+..|.+|++|+|.|++||.+.|+ ..++|+.+|+|++++|+|++
T Consensus 206 C~~P~-i~ng~~~~~~k~~y~~g~~v~y~C~~Gy~l~G~----~~~~C~~~g~Ws~~~P~C~~ 263 (263)
T PHA02927 206 CPHPT-ISNGYLSSGFKRSYSYNDNVDFKCKYGYKLSGS----SSSTCSPGNTWQPELPKCVR 263 (263)
T ss_pred CcCCC-CCCCEEecCCCCccccCCEEEEECCCCCeEcCC----CCeEECCCCEECCCCCeecC
Confidence 99874 67887764 356788999999999999999998 78999999999999999974
No 2
>PHA02639 EEV host range protein; Provisional
Probab=100.00 E-value=5.6e-36 Score=246.04 Aligned_cols=183 Identities=26% Similarity=0.539 Sum_probs=160.8
Q ss_pred eeEEeeCCCCcc-CCCeEEeccCCcccccEEEEEcCCCCeEeCCCceEeCCC---CeeeCCCCceeccceeeeecccccc
Q psy14531 19 TCQQIICPKIVV-ENPYLTLVEQNNTYRGHAIFQCSWGYQLKGPPDIVCQKN---GSWSGAIPECNAFFFFFFFFFFNPV 94 (222)
Q Consensus 19 ~C~~~~C~~p~~-~ng~~~~~~~~~~~g~~~~~~C~~gy~l~G~~~~~C~~~---g~W~~~~p~C~~~~~~~~~~~~~~~ 94 (222)
.++.+.|+.|+. +||.+......|.+|+.|.|+|++||.|.|...++|+.+ |+|+++.|.|+. +
T Consensus 16 ~~k~i~C~~P~~i~NG~v~~~~~~y~~G~~V~Y~Cn~GY~L~G~~~~~C~~d~~nG~WS~~~P~C~~------------~ 83 (295)
T PHA02639 16 GVKSIYCDKPDDISNGFITELMEKYEIGKLIEYTCNTDYALIGDRFRTCIKDKNNAIWSNKAPFCML------------K 83 (295)
T ss_pred CccccCCcCCCCCCCCEEeccCCcccCCCEEEEEeCCCCEECCCCeEEEeCCCCCCEECCCCCEEee------------c
Confidence 356788999987 999988666789999999999999999999999999864 699999999998 8
Q ss_pred cCCCCCCCCCceEEeCCCCCCcCCCCEEEEEcCC----CCEEcCCCeEEeCcCCeeeCCCCcee-ecCCCCCCCCCeEEe
Q psy14531 95 HCPVPALPLNGHLIEDPTGGPYRVGAILQFACND----RHHLLGEETIVCTETGRWSRAPPRCK-ARCEYPGEPQNGKII 169 (222)
Q Consensus 95 ~C~~p~~~~~g~~~~~~~~~~~~~g~~~~~~C~~----gy~~~g~~~~~C~~~g~Ws~~~p~C~-~~C~~p~~~~~g~~~ 169 (222)
.|+.|+.+.||.+.. ....|.+|++++|+|+. ||.+.|...++|+.+|+|++..|.|+ +.|+.| .+.||.+.
T Consensus 84 ~C~~Pp~~~nG~i~~--~~~~y~~G~~V~y~C~~g~~~gY~L~G~~~~~C~~dG~WS~~~P~C~~i~C~~P-~i~nG~v~ 160 (295)
T PHA02639 84 ECNDPPSIINGKIYN--KREMYKVGDEIYYVCNEHKGVQYSLVGNEKITCIQDKSWKPDPPICKMINCRFP-ALQNGYIN 160 (295)
T ss_pred cCcCCCCCCCcEEec--CCCceECCCEEEEEeCCCCCCceEECCCCeEEECCCCeECCCCCeeeeEEeCCC-CCCCCceE
Confidence 999999999998863 35678999999999999 59999999999999999999899999 799977 46777654
Q ss_pred c--CccccCCCCeEEEEcCCCCeeccCCCCCCcceeCCCCcccCCCCceeeCc
Q psy14531 170 P--LKFFYDPGDHIQVTCNDGYVKPLDITPTSGPYCQSDGTWSLDIPHCTNYT 220 (222)
Q Consensus 170 ~--~~~~~~~g~~v~y~C~~gy~~~~~~~~~~~~~C~~~G~W~~~~p~C~~~~ 220 (222)
. ....|..|+.|+|+|++||.+.|+ ..++|+.+|+|++++|+|+...
T Consensus 161 ~~~~~~~~~yg~~V~fsC~~GY~L~Gs----~~~tC~~nG~Ws~~~P~C~~~~ 209 (295)
T PHA02639 161 GIPSNKKFYYKTRVGFSCKSGFDLVGE----KYSTCNINATWFPSIPTCVRNK 209 (295)
T ss_pred cccCCCceecCCEEEEEcCCCCeEcCC----CcEEECCCCeECCCCCeEeccC
Confidence 2 234566799999999999999998 8899999999999999998754
No 3
>PHA02927 secreted complement-binding protein; Provisional
Probab=100.00 E-value=1.7e-32 Score=224.21 Aligned_cols=178 Identities=28% Similarity=0.558 Sum_probs=155.4
Q ss_pred eeEEeeCCCCcc-CCCeEEe-----ccCCcccccEEEEEcCCCCeEe--CCCceEeCCCCeeeCCCCceeccceeeeecc
Q psy14531 19 TCQQIICPKIVV-ENPYLTL-----VEQNNTYRGHAIFQCSWGYQLK--GPPDIVCQKNGSWSGAIPECNAFFFFFFFFF 90 (222)
Q Consensus 19 ~C~~~~C~~p~~-~ng~~~~-----~~~~~~~g~~~~~~C~~gy~l~--G~~~~~C~~~g~W~~~~p~C~~~~~~~~~~~ 90 (222)
.|.++.|+.|.. .|+.+.. ....|.+|++|+|+|++||.+. |...++|+.+| |+ ..|.|+.
T Consensus 15 ~c~~~~c~~~~~~~~~~~~~~~~~~~~~~y~~g~~v~y~C~~Gy~~~~~g~~~~~C~~~g-Ws-~~p~C~~--------- 83 (263)
T PHA02927 15 GCVLSCCTIPSRPINMKFKNSVETDANANYNIGDTIEYLCLPGYRKQKMGPIYAKCTGTG-WT-LFNQCIK--------- 83 (263)
T ss_pred HHHhccCCCCCcccceeeccccccccCceeCCCCEEEEEeCCCceecCCCccEEEecCCC-CC-CCCcEEe---------
Confidence 477888999988 8888763 2346889999999999999974 78889999888 99 4799998
Q ss_pred cccccCCCCCCCCCceEEeCCCCCCcCCCCEEEEEcCCCCEEcCCCeEEeCcCC----eeeCCCCcee-ecCCCCCCCCC
Q psy14531 91 FNPVHCPVPALPLNGHLIEDPTGGPYRVGAILQFACNDRHHLLGEETIVCTETG----RWSRAPPRCK-ARCEYPGEPQN 165 (222)
Q Consensus 91 ~~~~~C~~p~~~~~g~~~~~~~~~~~~~g~~~~~~C~~gy~~~g~~~~~C~~~g----~Ws~~~p~C~-~~C~~p~~~~~ 165 (222)
+.|+.|+.++||.+.. ..+.+|++|+|+|+.||.|+|...++|+.+| +|++..|.|+ +.|+.|+.+.|
T Consensus 84 ---~~C~~p~~i~NG~~~~----~~~~~G~~v~y~C~~Gy~l~G~~~~~C~~~~~g~~~Ws~~~P~C~~~~C~~P~~~~n 156 (263)
T PHA02927 84 ---RRCPSPRDIDNGQLDI----GGVDFGSSITYSCNSGYQLIGESKSYCELGSTGSMVWNPEAPICESVKCQSPPSISN 156 (263)
T ss_pred ---CCCcCCCCCCCCEEeC----CCccCCCEEEEECCCCCEEcCCCeeEEEeCCCCcceECCCCCccccccCCCCCCCCC
Confidence 8999999999999863 3467899999999999999999999998753 8999899999 79999999999
Q ss_pred eEEecCccccCCCCeEEEEcCCCCeeccCCCCCCcceeCCCCcccCCCCceeeCc
Q psy14531 166 GKIIPLKFFYDPGDHIQVTCNDGYVKPLDITPTSGPYCQSDGTWSLDIPHCTNYT 220 (222)
Q Consensus 166 g~~~~~~~~~~~g~~v~y~C~~gy~~~~~~~~~~~~~C~~~G~W~~~~p~C~~~~ 220 (222)
|.+...+..|..|+.|+|.|++||.+.|+ ..++|. +|+|+. +|.|+++.
T Consensus 157 G~~~~~~~~y~~g~~v~y~C~~Gy~l~G~----~~~~C~-~G~Ws~-~P~C~~v~ 205 (263)
T PHA02927 157 GRHNGYEDFYTDGSVVTYSCNSGYSLIGN----SGVLCS-GGEWSD-PPTCQIVK 205 (263)
T ss_pred cEEcCCcccccCCCEEEEECCCCCEECCC----CeeEEC-CCccCC-CCeEeEeE
Confidence 99877666788899999999999999998 789997 899997 69998653
No 4
>PHA02954 EEV membrane glycoprotein; Provisional
Probab=99.98 E-value=2.6e-31 Score=219.57 Aligned_cols=181 Identities=22% Similarity=0.507 Sum_probs=149.9
Q ss_pred ceEeccCCccCCCCCeeEEeeCCCCcc-CCCeEEeccCCcccccEEEEEcCCCCeEeCCCceEeCC---CCeeeCCCCce
Q psy14531 4 PVFRVSQGQWSGEVPTCQQIICPKIVV-ENPYLTLVEQNNTYRGHAIFQCSWGYQLKGPPDIVCQK---NGSWSGAIPEC 79 (222)
Q Consensus 4 ~~~c~~~g~Ws~~~p~C~~~~C~~p~~-~ng~~~~~~~~~~~g~~~~~~C~~gy~l~G~~~~~C~~---~g~W~~~~p~C 79 (222)
.++|.. ++|+...| |+ +.|..|+. .++.. ...|.+|+.|+|+|++||. .++|+. ++.|+. .|.|
T Consensus 58 ~itC~~-~~WS~~~p-C~-k~C~~p~~~~~~~~---~~~y~~G~~V~ysC~~Gy~-----~~~C~~~g~~~~WS~-~ptC 125 (317)
T PHA02954 58 NAVCET-DKWKYENP-CK-KMCTVSDYVSELYD---KPLYEVNSTITLICKDETK-----YFRCEEKNGNTSWND-TVTC 125 (317)
T ss_pred CeEECC-CcccCCCC-CC-CcCCCCcccccccc---CCCccCCCEEEEEECCCCc-----EEEeCCCCCCCccCC-CCee
Confidence 478855 47998877 97 67998876 55433 2568899999999999995 578975 567996 5799
Q ss_pred eccceeeeecccccccCCCCCCCCCceEEeCCCCCCcCCCCEEEEEcCCCCEEcCCCeEEeCcCCeeeCCCCceeecCCC
Q psy14531 80 NAFFFFFFFFFFNPVHCPVPALPLNGHLIEDPTGGPYRVGAILQFACNDRHHLLGEETIVCTETGRWSRAPPRCKARCEY 159 (222)
Q Consensus 80 ~~~~~~~~~~~~~~~~C~~p~~~~~g~~~~~~~~~~~~~g~~~~~~C~~gy~~~g~~~~~C~~~g~Ws~~~p~C~~~C~~ 159 (222)
+. +.|++|. +.||.+.. ....|.+|+.|+|+|+.||.|.|+..++|+++ .|+ ..|.|+..|+.
T Consensus 126 ~~------------i~C~pP~-i~NG~~~~--~~~~Y~yGd~VtysC~~GY~L~Gs~~i~C~~~-~Ws-~~P~C~~~C~~ 188 (317)
T PHA02954 126 PN------------AECQPLQ-LEHGSCQP--VKEKYSFGEHITINCDVGYEVIGASYISCTAN-SWN-VIPSCQQKCDI 188 (317)
T ss_pred cc------------eECCCCC-CCCCeecc--CCCceeCCCEEEEEcCCCCEECcCCeeEECCC-cCC-CCCccccccCC
Confidence 99 8997654 67998752 35679999999999999999999999999977 698 47999988986
Q ss_pred CCCCCCeEEecCccccCCCCeEEEEcCCCCeeccCCCCCCcceeCCCCcccCCCCceeeCcC
Q psy14531 160 PGEPQNGKIIPLKFFYDPGDHIQVTCNDGYVKPLDITPTSGPYCQSDGTWSLDIPHCTNYTD 221 (222)
Q Consensus 160 p~~~~~g~~~~~~~~~~~g~~v~y~C~~gy~~~~~~~~~~~~~C~~~G~W~~~~p~C~~~~~ 221 (222)
| .+.||.+.. ..|.+|+.|+|.|++||.+.|+ ..++|. +|+|++++|.|....+
T Consensus 189 P-~i~NG~~sg--~~y~~Gd~Vtf~C~~Gy~L~Gs----~~itC~-~g~Ws~~~P~C~~~~~ 242 (317)
T PHA02954 189 P-SLSNGLISG--STFSIGGVIHLSCKSGFTLTGS----PSSTCI-DGKWNPVLPICVRSNE 242 (317)
T ss_pred C-CCCCCeEcC--CCcccCCEEEEECCCCCeECCC----cceEEC-CCeEeCCCCceeCCCC
Confidence 5 678998765 3577899999999999999998 889997 9999999999988654
No 5
>PHA02831 EEV host range protein; Provisional
Probab=99.97 E-value=4e-31 Score=213.26 Aligned_cols=159 Identities=26% Similarity=0.585 Sum_probs=137.8
Q ss_pred ccCCcccccEEEEEcCCCCeEeCCCceEeCCCCeeeCCCCceeccceeeeecccccccCCCCCCCCCceEEeCCCCCCcC
Q psy14531 38 VEQNNTYRGHAIFQCSWGYQLKGPPDIVCQKNGSWSGAIPECNAFFFFFFFFFFNPVHCPVPALPLNGHLIEDPTGGPYR 117 (222)
Q Consensus 38 ~~~~~~~g~~~~~~C~~gy~l~G~~~~~C~~~g~W~~~~p~C~~~~~~~~~~~~~~~~C~~p~~~~~g~~~~~~~~~~~~ 117 (222)
.+..|.+|++|+|+|++||.+ ..++|. +|+|++. |.|... +.|+.|+.+.||.+.. ....|.
T Consensus 36 ~~~~Y~~Gs~V~Y~C~~GY~~---~~itC~-dG~WS~~-P~C~~~-----------~~C~~Pp~i~NG~i~~--~~~~Y~ 97 (268)
T PHA02831 36 ENKVYEENENLEYKCNNNFDK---VFVTCN-NGSWSTK-NMCIGK-----------RNCKDPVTILNGYIKN--KKDQYS 97 (268)
T ss_pred cCcccCCCCEEEEECCCCCEe---eeEEeC-CCccCCC-Cccccc-----------ccCcCCCCCCCCEEec--cCCcee
Confidence 345789999999999999985 478996 9999964 777531 5899999999999863 356689
Q ss_pred CCCEEEEEcC----CCCEEcCCCeEEeCcCCeeeCCCCcee-ecCCCCCCCCCeEEecCccccCCCCeEEEEcCCCCeec
Q psy14531 118 VGAILQFACN----DRHHLLGEETIVCTETGRWSRAPPRCK-ARCEYPGEPQNGKIIPLKFFYDPGDHIQVTCNDGYVKP 192 (222)
Q Consensus 118 ~g~~~~~~C~----~gy~~~g~~~~~C~~~g~Ws~~~p~C~-~~C~~p~~~~~g~~~~~~~~~~~g~~v~y~C~~gy~~~ 192 (222)
+|+.|+|+|+ .||.|.|.+.++|. +|+|++..|.|+ +.|+.| .+.||.+...+..|.+|+.|+|.|++||.+.
T Consensus 98 ~Gd~VtYsC~~g~~~GY~LvG~s~~tC~-dG~WS~~~P~C~~i~C~~P-~i~NG~i~~~~~~y~~G~~Vty~C~~GY~L~ 175 (268)
T PHA02831 98 FGDSVTYACKVNKLEKYSIVGNETVKCI-NKQWVPKYPVCKLIRCKYP-ALQNGFLNVFEKKFYYGDIVNFKCKKGFILL 175 (268)
T ss_pred CCCEEEEECCCCCCCCeeEcCCceeEeC-CCcCCCCCCeeeEeeCCCC-CCCCCccccCCCceecCCEEEEEcCCCCEEC
Confidence 9999999999 69999999999996 999999899999 789988 4779987765567888999999999999999
Q ss_pred cCCCCCCcceeCCCCcccCCCCceeeCc
Q psy14531 193 LDITPTSGPYCQSDGTWSLDIPHCTNYT 220 (222)
Q Consensus 193 ~~~~~~~~~~C~~~G~W~~~~p~C~~~~ 220 (222)
|+ ..++|+.+|+|++++|+|+...
T Consensus 176 Gs----s~~tC~~nG~Wsp~~P~C~~~~ 199 (268)
T PHA02831 176 GS----SVSTCDINSIWYPGIPKCVKDK 199 (268)
T ss_pred CC----ccEEECCCCeECCCCCCccCcc
Confidence 98 7899999999999999998763
No 6
>PHA02639 EEV host range protein; Provisional
Probab=99.95 E-value=2e-27 Score=195.52 Aligned_cols=144 Identities=22% Similarity=0.429 Sum_probs=125.6
Q ss_pred CceEecc---CCccCCCCCeeEEeeCCCCcc-CCCeEEeccCCcccccEEEEEcCC----CCeEeCCCceEeCCCCeeeC
Q psy14531 3 HPVFRVS---QGQWSGEVPTCQQIICPKIVV-ENPYLTLVEQNNTYRGHAIFQCSW----GYQLKGPPDIVCQKNGSWSG 74 (222)
Q Consensus 3 ~~~~c~~---~g~Ws~~~p~C~~~~C~~p~~-~ng~~~~~~~~~~~g~~~~~~C~~----gy~l~G~~~~~C~~~g~W~~ 74 (222)
..++|+. +|.|++..|.|+.+.|+.|+. +||.+......|.+|+.++|+|+. ||.|.|...++|+.+|+|++
T Consensus 60 ~~~~C~~d~~nG~WS~~~P~C~~~~C~~Pp~~~nG~i~~~~~~y~~G~~V~y~C~~g~~~gY~L~G~~~~~C~~dG~WS~ 139 (295)
T PHA02639 60 RFRTCIKDKNNAIWSNKAPFCMLKECNDPPSIINGKIYNKREMYKVGDEIYYVCNEHKGVQYSLVGNEKITCIQDKSWKP 139 (295)
T ss_pred CeEEEeCCCCCCEECCCCCEEeeccCcCCCCCCCcEEecCCCceECCCEEEEEeCCCCCCceEECCCCeEEECCCCeECC
Confidence 4578985 469999999999999999888 999988766778999999999999 59999999999999999999
Q ss_pred CCCceeccceeeeecccccccCCCCCCCCCceEEeCCCCCCcCCCCEEEEEcCCCCEEcCCCeEEeCcCCeeeCCCCcee
Q psy14531 75 AIPECNAFFFFFFFFFFNPVHCPVPALPLNGHLIEDPTGGPYRVGAILQFACNDRHHLLGEETIVCTETGRWSRAPPRCK 154 (222)
Q Consensus 75 ~~p~C~~~~~~~~~~~~~~~~C~~p~~~~~g~~~~~~~~~~~~~g~~~~~~C~~gy~~~g~~~~~C~~~g~Ws~~~p~C~ 154 (222)
+.|.|+. +.|+.|. +.||.+........+.+|++|+|+|+.||.|.|+..++|+.+|+|+++.|.|+
T Consensus 140 ~~P~C~~------------i~C~~P~-i~nG~v~~~~~~~~~~yg~~V~fsC~~GY~L~Gs~~~tC~~nG~Ws~~~P~C~ 206 (295)
T PHA02639 140 DPPICKM------------INCRFPA-LQNGYINGIPSNKKFYYKTRVGFSCKSGFDLVGEKYSTCNINATWFPSIPTCV 206 (295)
T ss_pred CCCeeee------------EEeCCCC-CCCCceEcccCCCceecCCEEEEEcCCCCeEcCCCcEEECCCCeECCCCCeEe
Confidence 9999999 8999775 46887653333466889999999999999999999999999999999999998
Q ss_pred ecCCC
Q psy14531 155 ARCEY 159 (222)
Q Consensus 155 ~~C~~ 159 (222)
...+.
T Consensus 207 ~~~~~ 211 (295)
T PHA02639 207 RNKPI 211 (295)
T ss_pred ccCCc
Confidence 65543
No 7
>PHA02831 EEV host range protein; Provisional
Probab=99.95 E-value=2.5e-27 Score=191.23 Aligned_cols=145 Identities=24% Similarity=0.498 Sum_probs=123.5
Q ss_pred ceEeccCCccCCCCCeeE-EeeCCCCcc-CCCeEEeccCCcccccEEEEEcC----CCCeEeCCCceEeCCCCeeeCCCC
Q psy14531 4 PVFRVSQGQWSGEVPTCQ-QIICPKIVV-ENPYLTLVEQNNTYRGHAIFQCS----WGYQLKGPPDIVCQKNGSWSGAIP 77 (222)
Q Consensus 4 ~~~c~~~g~Ws~~~p~C~-~~~C~~p~~-~ng~~~~~~~~~~~g~~~~~~C~----~gy~l~G~~~~~C~~~g~W~~~~p 77 (222)
.++| .+|.|+.. |.|. .+.|+.|+. +||.+......|.+|+.|+|+|+ .||.|.|...++|. +|+|+++.|
T Consensus 58 ~itC-~dG~WS~~-P~C~~~~~C~~Pp~i~NG~i~~~~~~Y~~Gd~VtYsC~~g~~~GY~LvG~s~~tC~-dG~WS~~~P 134 (268)
T PHA02831 58 FVTC-NNGSWSTK-NMCIGKRNCKDPVTILNGYIKNKKDQYSFGDSVTYACKVNKLEKYSIVGNETVKCI-NKQWVPKYP 134 (268)
T ss_pred eEEe-CCCccCCC-CcccccccCcCCCCCCCCEEeccCCceeCCCEEEEECCCCCCCCeeEcCCceeEeC-CCcCCCCCC
Confidence 4556 69999975 6776 467999887 99999876677999999999999 69999999999996 999999999
Q ss_pred ceeccceeeeecccccccCCCCCCCCCceEEeCCCCCCcCCCCEEEEEcCCCCEEcCCCeEEeCcCCeeeCCCCcee-ec
Q psy14531 78 ECNAFFFFFFFFFFNPVHCPVPALPLNGHLIEDPTGGPYRVGAILQFACNDRHHLLGEETIVCTETGRWSRAPPRCK-AR 156 (222)
Q Consensus 78 ~C~~~~~~~~~~~~~~~~C~~p~~~~~g~~~~~~~~~~~~~g~~~~~~C~~gy~~~g~~~~~C~~~g~Ws~~~p~C~-~~ 156 (222)
.|+. +.|+.|. +.||.+.. ....|.+|++|+|+|+.||.|.|+..++|+.+|+|++..|.|+ ..
T Consensus 135 ~C~~------------i~C~~P~-i~NG~i~~--~~~~y~~G~~Vty~C~~GY~L~Gss~~tC~~nG~Wsp~~P~C~~~~ 199 (268)
T PHA02831 135 VCKL------------IRCKYPA-LQNGFLNV--FEKKFYYGDIVNFKCKKGFILLGSSVSTCDINSIWYPGIPKCVKDK 199 (268)
T ss_pred eeeE------------eeCCCCC-CCCCcccc--CCCceecCCEEEEEcCCCCEECCCccEEECCCCeECCCCCCccCcc
Confidence 9999 8999875 67998652 3567899999999999999999999999999999999999999 56
Q ss_pred CCCCCCCCCeE
Q psy14531 157 CEYPGEPQNGK 167 (222)
Q Consensus 157 C~~p~~~~~g~ 167 (222)
|..+ ..++..
T Consensus 200 ~~~~-~~~~~~ 209 (268)
T PHA02831 200 VHNE-IQPNYL 209 (268)
T ss_pred cCCC-CCccce
Confidence 7755 344444
No 8
>PHA02954 EEV membrane glycoprotein; Provisional
Probab=99.95 E-value=5.7e-27 Score=193.80 Aligned_cols=168 Identities=26% Similarity=0.538 Sum_probs=138.1
Q ss_pred CeeEEeeCCCCccCCCeEEeccCCcccccEEEEEcCCCCeEeCCCceEeCCCCeeeCCCCceeccceeeeecccccccCC
Q psy14531 18 PTCQQIICPKIVVENPYLTLVEQNNTYRGHAIFQCSWGYQLKGPPDIVCQKNGSWSGAIPECNAFFFFFFFFFFNPVHCP 97 (222)
Q Consensus 18 p~C~~~~C~~p~~~ng~~~~~~~~~~~g~~~~~~C~~gy~l~G~~~~~C~~~g~W~~~~p~C~~~~~~~~~~~~~~~~C~ 97 (222)
+.|+.+.|+.|..+||.+......|.+|+.|+|+|+.||.+.+. .++|+.+ .|+.+.| |.. .|.
T Consensus 14 ~~~v~~~C~~P~~~ng~~~~~~~~Y~~gd~V~y~C~~GY~l~~~-~itC~~~-~WS~~~p-C~k-------------~C~ 77 (317)
T PHA02954 14 PAVVYSTCTVPTMNNAKLTSTETSFNDKQKVTFTCDSGYYSLDP-NAVCETD-KWKYENP-CKK-------------MCT 77 (317)
T ss_pred HHHHhCcCCCCCCCcCEEcCCcccccCCCEEEEEcCCCcccCCC-CeEECCC-cccCCCC-CCC-------------cCC
Confidence 56778899998879999876546788899999999999998875 6999865 5998777 976 798
Q ss_pred CCCCCCCceEEeCCCCCCcCCCCEEEEEcCCCCEEcCCCeEEeCc---CCeeeCCCCcee-ecCCCCCCCCCeEEecCcc
Q psy14531 98 VPALPLNGHLIEDPTGGPYRVGAILQFACNDRHHLLGEETIVCTE---TGRWSRAPPRCK-ARCEYPGEPQNGKIIPLKF 173 (222)
Q Consensus 98 ~p~~~~~g~~~~~~~~~~~~~g~~~~~~C~~gy~~~g~~~~~C~~---~g~Ws~~~p~C~-~~C~~p~~~~~g~~~~~~~ 173 (222)
.|..+.++.. ...|.+|++|+|+|+.||. .++|.. ++.|+. .|.|+ +.|..| .+.||.+...+.
T Consensus 78 ~p~~~~~~~~-----~~~y~~G~~V~ysC~~Gy~-----~~~C~~~g~~~~WS~-~ptC~~i~C~pP-~i~NG~~~~~~~ 145 (317)
T PHA02954 78 VSDYVSELYD-----KPLYEVNSTITLICKDETK-----YFRCEEKNGNTSWND-TVTCPNAECQPL-QLEHGSCQPVKE 145 (317)
T ss_pred CCcccccccc-----CCCccCCCEEEEEECCCCc-----EEEeCCCCCCCccCC-CCeecceECCCC-CCCCCeeccCCC
Confidence 8766655432 3568999999999999984 578975 578997 67999 889755 578999876666
Q ss_pred ccCCCCeEEEEcCCCCeeccCCCCCCcceeCCCCcccCCCCceeeC
Q psy14531 174 FYDPGDHIQVTCNDGYVKPLDITPTSGPYCQSDGTWSLDIPHCTNY 219 (222)
Q Consensus 174 ~~~~g~~v~y~C~~gy~~~~~~~~~~~~~C~~~G~W~~~~p~C~~~ 219 (222)
.|.+|+.|+|.|++||.+.|+ ..++|+.+ .|+ ++|.|...
T Consensus 146 ~Y~yGd~VtysC~~GY~L~Gs----~~i~C~~~-~Ws-~~P~C~~~ 185 (317)
T PHA02954 146 KYSFGEHITINCDVGYEVIGA----SYISCTAN-SWN-VIPSCQQK 185 (317)
T ss_pred ceeCCCEEEEEcCCCCEECcC----CeeEECCC-cCC-CCCccccc
Confidence 788999999999999999998 89999966 698 57999753
No 9
>PHA02817 EEV Host range protein; Provisional
Probab=99.93 E-value=5e-25 Score=173.47 Aligned_cols=125 Identities=25% Similarity=0.554 Sum_probs=111.1
Q ss_pred CeeEEeeCCCCcc-CCCeEEeccCCcccccEEEEEcCCC-----CeEeCCCceEeCCCCeeeCCCCceeccceeeeeccc
Q psy14531 18 PTCQQIICPKIVV-ENPYLTLVEQNNTYRGHAIFQCSWG-----YQLKGPPDIVCQKNGSWSGAIPECNAFFFFFFFFFF 91 (222)
Q Consensus 18 p~C~~~~C~~p~~-~ng~~~~~~~~~~~g~~~~~~C~~g-----y~l~G~~~~~C~~~g~W~~~~p~C~~~~~~~~~~~~ 91 (222)
-.|+.++|+.|+. +||.+......|.+|+.|+|+|++| |.|.|...++|+.+|+|+++.|.|+.
T Consensus 17 ~~C~~~~C~~PP~i~NG~i~~~~~~Y~~Gd~Vty~C~~G~~~~gY~L~G~~~i~C~~dG~Ws~~~P~C~~---------- 86 (225)
T PHA02817 17 SLCDLNKCCYPPSIKNGYIYNKKTEYNIGSNVTFFCGNNTRGVRYTLVGEKNIICEKDGKWNKEFPVCKI---------- 86 (225)
T ss_pred CEecCcCCCCCCCCCCCEEecCCCceeCCCEEEEEeCCCCCCCCEEECCCCeEEECCCCcCCCCCCeeee----------
Confidence 4698899999888 9999876667789999999999997 89999999999999999998999998
Q ss_pred ccccCCCCCCCCCceEEeCCCCCCcCCCCEEEEEcCCCCEEcCCCeEEeCcCCeeeCCCCceee
Q psy14531 92 NPVHCPVPALPLNGHLIEDPTGGPYRVGAILQFACNDRHHLLGEETIVCTETGRWSRAPPRCKA 155 (222)
Q Consensus 92 ~~~~C~~p~~~~~g~~~~~~~~~~~~~g~~~~~~C~~gy~~~g~~~~~C~~~g~Ws~~~p~C~~ 155 (222)
+.|+.|. ++||.+........|.+|++|+|.|++||.|.|...++|+++|+|++..|.|..
T Consensus 87 --v~C~~P~-i~NG~v~~~~~~~~y~yg~~Vty~C~~Gy~L~G~~~~tC~~~G~WSp~~P~C~~ 147 (225)
T PHA02817 87 --IRCRFPA-LQNGFVNGIPDSKKFYYESEVSFSCKPGFVLIGTKYSVCGINSSWIPKVPICSR 147 (225)
T ss_pred --eECCCCC-CcCceeEccccCCceEcCCEEEEEcCCCCEEcCCCceEECCCCeECCCCCEeec
Confidence 8999876 568877533335678899999999999999999999999999999998999984
No 10
>PHA02817 EEV Host range protein; Provisional
Probab=99.91 E-value=5.6e-24 Score=167.56 Aligned_cols=120 Identities=27% Similarity=0.625 Sum_probs=105.4
Q ss_pred ccCCCCCCCCCceEEeCCCCCCcCCCCEEEEEcCCC-----CEEcCCCeEEeCcCCeeeCCCCcee-ecCCCCCCCCCeE
Q psy14531 94 VHCPVPALPLNGHLIEDPTGGPYRVGAILQFACNDR-----HHLLGEETIVCTETGRWSRAPPRCK-ARCEYPGEPQNGK 167 (222)
Q Consensus 94 ~~C~~p~~~~~g~~~~~~~~~~~~~g~~~~~~C~~g-----y~~~g~~~~~C~~~g~Ws~~~p~C~-~~C~~p~~~~~g~ 167 (222)
+.|+.|+.+.||.+.. ....|.+|++|+|+|..| |.+.|...++|+.+|+|++..|.|+ +.|+.|. +.||.
T Consensus 22 ~~C~~PP~i~NG~i~~--~~~~Y~~Gd~Vty~C~~G~~~~gY~L~G~~~i~C~~dG~Ws~~~P~C~~v~C~~P~-i~NG~ 98 (225)
T PHA02817 22 NKCCYPPSIKNGYIYN--KKTEYNIGSNVTFFCGNNTRGVRYTLVGEKNIICEKDGKWNKEFPVCKIIRCRFPA-LQNGF 98 (225)
T ss_pred cCCCCCCCCCCCEEec--CCCceeCCCEEEEEeCCCCCCCCEEECCCCeEEECCCCcCCCCCCeeeeeECCCCC-CcCce
Confidence 7999999999999753 356789999999999997 8999999999999999998899999 7999885 67887
Q ss_pred Ee--cCccccCCCCeEEEEcCCCCeeccCCCCCCcceeCCCCcccCCCCceeeCc
Q psy14531 168 II--PLKFFYDPGDHIQVTCNDGYVKPLDITPTSGPYCQSDGTWSLDIPHCTNYT 220 (222)
Q Consensus 168 ~~--~~~~~~~~g~~v~y~C~~gy~~~~~~~~~~~~~C~~~G~W~~~~p~C~~~~ 220 (222)
+. .....|..|+.|+|.|++||.+.|. ..++|+.+|+|++++|+|++..
T Consensus 99 v~~~~~~~~y~yg~~Vty~C~~Gy~L~G~----~~~tC~~~G~WSp~~P~C~~~~ 149 (225)
T PHA02817 99 VNGIPDSKKFYYESEVSFSCKPGFVLIGT----KYSVCGINSSWIPKVPICSRDN 149 (225)
T ss_pred eEccccCCceEcCCEEEEEcCCCCEEcCC----CceEECCCCeECCCCCEeecCC
Confidence 65 3345677899999999999999998 7899999999999999998643
No 11
>cd00033 CCP Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system. SUSHI repeats (short complement-like repeat, SCR) are abundant in complement control proteins. The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. Typically, 2 to 4 modules contribute to a binding site, implying that the orientation of the modules to each other is critical for function.
Probab=99.28 E-value=1.1e-11 Score=77.37 Aligned_cols=56 Identities=36% Similarity=0.746 Sum_probs=50.7
Q ss_pred CCCCcc-CCCeEEeccCCcccccEEEEEcCCCCeEeCCCceEeCCCCeeeCCCCcee
Q psy14531 25 CPKIVV-ENPYLTLVEQNNTYRGHAIFQCSWGYQLKGPPDIVCQKNGSWSGAIPECN 80 (222)
Q Consensus 25 C~~p~~-~ng~~~~~~~~~~~g~~~~~~C~~gy~l~G~~~~~C~~~g~W~~~~p~C~ 80 (222)
|+.|+. +||.+......|.+|+.|+|+|+.||.|.|...++|+.+|+|+...|.|.
T Consensus 1 C~~p~~~~~g~~~~~~~~~~~g~~~~~~C~~Gy~~~g~~~~~C~~~g~W~~~~p~C~ 57 (57)
T cd00033 1 CPPPPVPENGTVTGSKGSYSYGSTVTYSCNEGYTLVGSSTITCTENGGWSPPPPTCE 57 (57)
T ss_pred CcCCCCCCCcEEecCCCcccCCCEEEEECCCCCeEeCCCeeEECCCCeECCCCcccC
Confidence 777877 89999876678999999999999999999999999999999999888884
No 12
>smart00032 CCP Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR). The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. A missense mutation in seventh CCP domain causes deficiency of the b subunit of factor XIII.
Probab=99.27 E-value=1.5e-11 Score=76.69 Aligned_cols=55 Identities=31% Similarity=0.668 Sum_probs=49.1
Q ss_pred CCCCcc-CCCeEEecc-CCcccccEEEEEcCCCCeEeCCCceEeCCCCeeeCCCCce
Q psy14531 25 CPKIVV-ENPYLTLVE-QNNTYRGHAIFQCSWGYQLKGPPDIVCQKNGSWSGAIPEC 79 (222)
Q Consensus 25 C~~p~~-~ng~~~~~~-~~~~~g~~~~~~C~~gy~l~G~~~~~C~~~g~W~~~~p~C 79 (222)
|+.|+. .||.+.... ..|.+|+.++|.|+.||.|.|...++|+.+|+|+...|.|
T Consensus 1 C~~p~~~~~g~~~~~~~~~~~~g~~~~~~C~~Gy~l~g~~~~~C~~~g~Ws~~~p~C 57 (57)
T smart00032 1 CPPPPDIENGTITSSNKGTYSVGDTVTYSCNPGYTLIGSSTITCLEDGTWSPPAPTC 57 (57)
T ss_pred CcCCCCCCCCEEecCCCCeecCCCEEEEEcCCCCEEcCCCeeEECCCCEECCCCCcC
Confidence 677776 899988764 6789999999999999999999999999999999888877
No 13
>PF00084 Sushi: Sushi domain (SCR repeat); InterPro: IPR000436 Sushi domains are also known as Complement control protein (CCP) modules, or short consensus repeats (SCR), exist in a wide variety of complement and adhesion proteins. The structure is known for this domain, it is based on a beta-sandwich arrangement; one face made up of three beta-strands hydrogen-bonded to form a triple-stranded region at its centre and the other face formed from two separate beta-strands []. CD21 (also called C3d receptor, CR2, Epstein Barr virus receptor or EBV-R) is the receptor for EBV and for C3d, C3dg and iC3b. Complement components may activate B cells through CD21. CD21 is part of a large signal-transduction complex that also involves CD19, CD81, and Leu13. Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Complement decay-accelerating factor (Antigen CD55) belongs to the Cromer blood group system and is associated with Cr(a), Dr(a), Es(a), Tc(a/b/c), Wd(a), WES(a/b), IFC and UMC antigens. Complement receptor type 1 (C3b/C4b receptor) (Antigen CD35) belongs to the Knops blood group system and is associated with Kn(a/b), McC(a), Sl(a) and Yk(a) antigens. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; PDB: 1HFH_A 1HFI_A 1E5G_A 2UWN_A 2V8E_A 2XWB_H 3HS0_I 2OK5_A 2XWJ_J 3HRZ_D ....
Probab=99.26 E-value=4.7e-12 Score=78.92 Aligned_cols=55 Identities=35% Similarity=0.756 Sum_probs=48.8
Q ss_pred CCCCcc-CCCeEEeccCCcccccEEEEEcCCCCeEeCCCceEeCCCCeeeCCCCce
Q psy14531 25 CPKIVV-ENPYLTLVEQNNTYRGHAIFQCSWGYQLKGPPDIVCQKNGSWSGAIPEC 79 (222)
Q Consensus 25 C~~p~~-~ng~~~~~~~~~~~g~~~~~~C~~gy~l~G~~~~~C~~~g~W~~~~p~C 79 (222)
|+.|+. +|+.+......|.+|+.|+|+|+.||.+.|...++|+.+|+|+.+.|.|
T Consensus 1 C~~P~~~~~~~~~~~~~~~~~g~~~~~~C~~Gy~~~g~~~~~C~~~g~W~~~~p~C 56 (56)
T PF00084_consen 1 CPPPPPIPNGSISCTNNPYSYGSTVTFSCNPGYELSGSSTITCQSNGQWSPPPPTC 56 (56)
T ss_dssp EESESCBTTEEEESSSSSEETTEEEEEEESTTEEEESSSEEEEETTSEESSTTSEE
T ss_pred CcCCCCCCCcEEecCCCCccCCCEEEEcCCCCCEecCCCEEEECCCCEECCCCCCC
Confidence 566766 8887776667899999999999999999999999999999999988887
No 14
>cd00033 CCP Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system. SUSHI repeats (short complement-like repeat, SCR) are abundant in complement control proteins. The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. Typically, 2 to 4 modules contribute to a binding site, implying that the orientation of the modules to each other is critical for function.
Probab=99.26 E-value=1.5e-11 Score=76.73 Aligned_cols=57 Identities=33% Similarity=0.652 Sum_probs=51.2
Q ss_pred CCCCCCCCCeEEecCccccCCCCeEEEEcCCCCeeccCCCCCCcceeCCCCcccCCCCcee
Q psy14531 157 CEYPGEPQNGKIIPLKFFYDPGDHIQVTCNDGYVKPLDITPTSGPYCQSDGTWSLDIPHCT 217 (222)
Q Consensus 157 C~~p~~~~~g~~~~~~~~~~~g~~v~y~C~~gy~~~~~~~~~~~~~C~~~G~W~~~~p~C~ 217 (222)
|+.|+.+.||.+......|..|+.|+|.|++||.+.|. ..++|+.+|+|++..|.|.
T Consensus 1 C~~p~~~~~g~~~~~~~~~~~g~~~~~~C~~Gy~~~g~----~~~~C~~~g~W~~~~p~C~ 57 (57)
T cd00033 1 CPPPPVPENGTVTGSKGSYSYGSTVTYSCNEGYTLVGS----STITCTENGGWSPPPPTCE 57 (57)
T ss_pred CcCCCCCCCcEEecCCCcccCCCEEEEECCCCCeEeCC----CeeEECCCCeECCCCcccC
Confidence 77888888999887666788999999999999999887 7899999999999989984
No 15
>smart00032 CCP Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR). The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. A missense mutation in seventh CCP domain causes deficiency of the b subunit of factor XIII.
Probab=99.24 E-value=3.3e-11 Score=75.06 Aligned_cols=57 Identities=39% Similarity=0.846 Sum_probs=49.7
Q ss_pred CCCCCCCCCceEEeCCCCCCcCCCCEEEEEcCCCCEEcCCCeEEeCcCCeeeCCCCce
Q psy14531 96 CPVPALPLNGHLIEDPTGGPYRVGAILQFACNDRHHLLGEETIVCTETGRWSRAPPRC 153 (222)
Q Consensus 96 C~~p~~~~~g~~~~~~~~~~~~~g~~~~~~C~~gy~~~g~~~~~C~~~g~Ws~~~p~C 153 (222)
|+.|+.+.||.+.... ...|.+|++++|.|+.||.+.|...++|+.+|+|+...|.|
T Consensus 1 C~~p~~~~~g~~~~~~-~~~~~~g~~~~~~C~~Gy~l~g~~~~~C~~~g~Ws~~~p~C 57 (57)
T smart00032 1 CPPPPDIENGTITSSN-KGTYSVGDTVTYSCNPGYTLIGSSTITCLEDGTWSPPAPTC 57 (57)
T ss_pred CcCCCCCCCCEEecCC-CCeecCCCEEEEEcCCCCEEcCCCeeEECCCCEECCCCCcC
Confidence 6777878899887542 36799999999999999999999999999999999977877
No 16
>PF00084 Sushi: Sushi domain (SCR repeat); InterPro: IPR000436 Sushi domains are also known as Complement control protein (CCP) modules, or short consensus repeats (SCR), exist in a wide variety of complement and adhesion proteins. The structure is known for this domain, it is based on a beta-sandwich arrangement; one face made up of three beta-strands hydrogen-bonded to form a triple-stranded region at its centre and the other face formed from two separate beta-strands []. CD21 (also called C3d receptor, CR2, Epstein Barr virus receptor or EBV-R) is the receptor for EBV and for C3d, C3dg and iC3b. Complement components may activate B cells through CD21. CD21 is part of a large signal-transduction complex that also involves CD19, CD81, and Leu13. Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Complement decay-accelerating factor (Antigen CD55) belongs to the Cromer blood group system and is associated with Cr(a), Dr(a), Es(a), Tc(a/b/c), Wd(a), WES(a/b), IFC and UMC antigens. Complement receptor type 1 (C3b/C4b receptor) (Antigen CD35) belongs to the Knops blood group system and is associated with Kn(a/b), McC(a), Sl(a) and Yk(a) antigens. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; PDB: 1HFH_A 1HFI_A 1E5G_A 2UWN_A 2V8E_A 2XWB_H 3HS0_I 2OK5_A 2XWJ_J 3HRZ_D ....
Probab=99.22 E-value=7.4e-12 Score=78.02 Aligned_cols=56 Identities=36% Similarity=0.610 Sum_probs=49.3
Q ss_pred CCCCCCCCCeEEecCccccCCCCeEEEEcCCCCeeccCCCCCCcceeCCCCcccCCCCce
Q psy14531 157 CEYPGEPQNGKIIPLKFFYDPGDHIQVTCNDGYVKPLDITPTSGPYCQSDGTWSLDIPHC 216 (222)
Q Consensus 157 C~~p~~~~~g~~~~~~~~~~~g~~v~y~C~~gy~~~~~~~~~~~~~C~~~G~W~~~~p~C 216 (222)
|..|+.+.++.+......|.+|+.|+|.|++||++.|. ..++|+.+|+|+++.|.|
T Consensus 1 C~~P~~~~~~~~~~~~~~~~~g~~~~~~C~~Gy~~~g~----~~~~C~~~g~W~~~~p~C 56 (56)
T PF00084_consen 1 CPPPPPIPNGSISCTNNPYSYGSTVTFSCNPGYELSGS----STITCQSNGQWSPPPPTC 56 (56)
T ss_dssp EESESCBTTEEEESSSSSEETTEEEEEEESTTEEEESS----SEEEEETTSEESSTTSEE
T ss_pred CcCCCCCCCcEEecCCCCccCCCEEEEcCCCCCEecCC----CEEEECCCCEECCCCCCC
Confidence 66777888997766557888999999999999999888 899998899999998987
No 17
>PF14704 DERM: Dermatopontin
Probab=92.60 E-value=1.3 Score=33.31 Aligned_cols=137 Identities=20% Similarity=0.323 Sum_probs=76.9
Q ss_pred ccccEEEEEcCCCCeEeCCCceEeC--CCCeeeCCCCceeccceeeeecccccccCCCCCCCCCceEEeCCCCCCcCCCC
Q psy14531 43 TYRGHAIFQCSWGYQLKGPPDIVCQ--KNGSWSGAIPECNAFFFFFFFFFFNPVHCPVPALPLNGHLIEDPTGGPYRVGA 120 (222)
Q Consensus 43 ~~g~~~~~~C~~gy~l~G~~~~~C~--~~g~W~~~~p~C~~~~~~~~~~~~~~~~C~~p~~~~~g~~~~~~~~~~~~~g~ 120 (222)
.++..+.|+|..|-.|.+....... +|..|. -.|.. +.= .+..+.-... ...-.++.
T Consensus 2 ~~d~~f~f~Cp~gq~i~~v~S~~~n~~eDR~W~---F~C~~------------~~~----~~~~~~~~~~--~~vN~~d~ 60 (152)
T PF14704_consen 2 NYDQPFSFQCPSGQGISGVRSYHSNNREDRRWS---FGCSP------------VGS----GPTQGSSCWW--SYVNNYDQ 60 (152)
T ss_pred CCCCCEEEECCCCCEEEEEEEEeCCCCCcccEE---EEEEe------------CCC----CCCccceEcc--hhhhccCC
Confidence 4567789999999999988888777 688898 45665 211 1111111111 13335688
Q ss_pred EEEEEcCCCCEEcCCCeEEeC--cCCeeeCCCCceeecCCCCCCCCCeEE-ec-CccccCCCCeEEEEcCCCCeeccCCC
Q psy14531 121 ILQFACNDRHHLLGEETIVCT--ETGRWSRAPPRCKARCEYPGEPQNGKI-IP-LKFFYDPGDHIQVTCNDGYVKPLDIT 196 (222)
Q Consensus 121 ~~~~~C~~gy~~~g~~~~~C~--~~g~Ws~~~p~C~~~C~~p~~~~~g~~-~~-~~~~~~~g~~v~y~C~~gy~~~~~~~ 196 (222)
.+.|+|+.++.|.|-....=. +|-.|. ..| |........... .. ....| +..+.|.=..++.+.|..+
T Consensus 61 ~~~~tCp~n~~i~G~~S~h~n~~eDR~w~---f~C---~~~~~~~~~~C~~~t~~~N~~--d~~~~~~~~~~~~i~G~~S 132 (152)
T PF14704_consen 61 PFNFTCPSNYYITGMQSYHDNSKEDRRWQ---FQC---CRINGATLYNCYWTTGYVNNY--DGPLDFTVPSGYVITGVSS 132 (152)
T ss_pred cEEEECCCCCEEEEEEEEecCCcccCceE---EEE---EecCCceeecceecccccccC--CCcEEEEcCCCcEEEeEee
Confidence 999999999998875443321 345563 245 222222111111 11 11122 6667787778888877632
Q ss_pred CCCcceeCCCCccc
Q psy14531 197 PTSGPYCQSDGTWS 210 (222)
Q Consensus 197 ~~~~~~C~~~G~W~ 210 (222)
. --.-.+|..|.
T Consensus 133 ~--~~~~~~DR~wk 144 (152)
T PF14704_consen 133 Y--HDNSNEDRRWK 144 (152)
T ss_pred e--cCCCCcCceEE
Confidence 1 11224566775
No 18
>smart00008 HormR Domain present in hormone receptors.
Probab=88.61 E-value=0.46 Score=30.64 Aligned_cols=33 Identities=27% Similarity=0.556 Sum_probs=26.6
Q ss_pred cCCCCEEEEEcCCCCEEcCC---CeEEeCcCCeeeC
Q psy14531 116 YRVGAILQFACNDRHHLLGE---ETIVCTETGRWSR 148 (222)
Q Consensus 116 ~~~g~~~~~~C~~gy~~~g~---~~~~C~~~g~Ws~ 148 (222)
-..|+++...|..++..... ..+.|..+|.|+.
T Consensus 18 t~~G~~~~~~CP~~~~g~~~~~~a~R~C~~~G~W~~ 53 (70)
T smart00008 18 TPAGQLVEVPCPDYFSGFSYKTGASRNCTENGGWSP 53 (70)
T ss_pred CCCCCEEEecCCCcccCcCCCCCEEEEcCCCCCCcc
Confidence 36699999999998765422 7899999999986
No 19
>PF02793 HRM: Hormone receptor domain; InterPro: IPR001879 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The secretin-like GPCRs include secretin [], calcitonin [], parathyroid hormone/parathyroid hormone-related peptides [] and vasoactive intestinal peptide [], all of which activate adenylyl cyclase and the phosphatidyl-inositol-calcium pathway. These receptors contain seven transmembrane regions, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins (however there is no significant sequence identity between these families, the secretin-like receptors thus bear their own unique '7TM' signature). Their N terminus is probably located on the extracellular side of the membrane and potentially glycosylated. This N-terminal region contains a long conserved region which allow the binding of large peptidic ligand such as glucagon, secretin, VIP and PACAP; this region contains five conserved cysteines residues which could be involved in disulphide bond. The C-terminal region of these receptor is probably cytoplasmic. Every receptor gene in this family is encoded on multiple exons, and several of these genes are alternatively spliced to yield functionally distinct products. This domain is found in the extracellular part of some of the secretin-like (family 2) GPCRs including the calcitonin receptor; corticotropin releasing factor receptor 1; diuretic hormone receptor; glucagon-like peptide 1 receptor; and parathyroid hormone peptide receptor.; GO: 0004930 G-protein coupled receptor activity, 0016020 membrane; PDB: 3EHT_A 3EHU_A 2L27_A 3EHS_A 4DLO_B 2QKH_A 3C5T_A 3C59_A 3IOL_A 3N7R_B ....
Probab=86.87 E-value=0.47 Score=30.08 Aligned_cols=33 Identities=27% Similarity=0.477 Sum_probs=26.5
Q ss_pred CCCCEEEEEcCCCCEE-----cCCCeEEeCcCCeeeCC
Q psy14531 117 RVGAILQFACNDRHHL-----LGEETIVCTETGRWSRA 149 (222)
Q Consensus 117 ~~g~~~~~~C~~gy~~-----~g~~~~~C~~~g~Ws~~ 149 (222)
..|+++...|..++.. .|..++.|..+|+|...
T Consensus 18 ~~G~~a~~~CP~~~~~~~~~~~g~a~R~C~~nG~W~~~ 55 (66)
T PF02793_consen 18 PAGETASQPCPSGFYGFGSDTSGNATRNCTENGTWEEH 55 (66)
T ss_dssp ETTEEEEEECSTTSTCCTSSTTSEEEEEEETTSSBECS
T ss_pred CCCCEEEeeCcCCccccccccceeEEEEcCCCCcCCCc
Confidence 5688999999998742 24578999999999873
No 20
>smart00008 HormR Domain present in hormone receptors.
Probab=84.77 E-value=1.2 Score=28.74 Aligned_cols=42 Identities=26% Similarity=0.545 Sum_probs=29.1
Q ss_pred CCCCeEEEEcCCCCeeccCCCCCCcceeCCCCcccC---CCCceee
Q psy14531 176 DPGDHIQVTCNDGYVKPLDITPTSGPYCQSDGTWSL---DIPHCTN 218 (222)
Q Consensus 176 ~~g~~v~y~C~~gy~~~~~~~~~~~~~C~~~G~W~~---~~p~C~~ 218 (222)
+.|+++...|..++........ ..+.|..+|.|.. ..-.|..
T Consensus 19 ~~G~~~~~~CP~~~~g~~~~~~-a~R~C~~~G~W~~~~~ny~~C~~ 63 (70)
T smart00008 19 PAGQLVEVPCPDYFSGFSYKTG-ASRNCTENGGWSPPFPNYSNCTS 63 (70)
T ss_pred CCCCEEEecCCCcccCcCCCCC-EEEEcCCCCCCccCCCCHhhccC
Confidence 4599999999887764332211 5799999999985 3344543
No 21
>PF02793 HRM: Hormone receptor domain; InterPro: IPR001879 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The secretin-like GPCRs include secretin [], calcitonin [], parathyroid hormone/parathyroid hormone-related peptides [] and vasoactive intestinal peptide [], all of which activate adenylyl cyclase and the phosphatidyl-inositol-calcium pathway. These receptors contain seven transmembrane regions, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins (however there is no significant sequence identity between these families, the secretin-like receptors thus bear their own unique '7TM' signature). Their N terminus is probably located on the extracellular side of the membrane and potentially glycosylated. This N-terminal region contains a long conserved region which allow the binding of large peptidic ligand such as glucagon, secretin, VIP and PACAP; this region contains five conserved cysteines residues which could be involved in disulphide bond. The C-terminal region of these receptor is probably cytoplasmic. Every receptor gene in this family is encoded on multiple exons, and several of these genes are alternatively spliced to yield functionally distinct products. This domain is found in the extracellular part of some of the secretin-like (family 2) GPCRs including the calcitonin receptor; corticotropin releasing factor receptor 1; diuretic hormone receptor; glucagon-like peptide 1 receptor; and parathyroid hormone peptide receptor.; GO: 0004930 G-protein coupled receptor activity, 0016020 membrane; PDB: 3EHT_A 3EHU_A 2L27_A 3EHS_A 4DLO_B 2QKH_A 3C5T_A 3C59_A 3IOL_A 3N7R_B ....
Probab=79.65 E-value=0.99 Score=28.57 Aligned_cols=36 Identities=19% Similarity=0.449 Sum_probs=25.7
Q ss_pred CCCCeEEEEcCCCCeeccCC-CCCCcceeCCCCcccC
Q psy14531 176 DPGDHIQVTCNDGYVKPLDI-TPTSGPYCQSDGTWSL 211 (222)
Q Consensus 176 ~~g~~v~y~C~~gy~~~~~~-~~~~~~~C~~~G~W~~ 211 (222)
+.|+++...|..++...+.+ .....+.|..+|+|..
T Consensus 18 ~~G~~a~~~CP~~~~~~~~~~~g~a~R~C~~nG~W~~ 54 (66)
T PF02793_consen 18 PAGETASQPCPSGFYGFGSDTSGNATRNCTENGTWEE 54 (66)
T ss_dssp ETTEEEEEECSTTSTCCTSSTTSEEEEEEETTSSBEC
T ss_pred CCCCEEEeeCcCCccccccccceeEEEEcCCCCcCCC
Confidence 35999999999887422111 1126899999999986
No 22
>PF14704 DERM: Dermatopontin
Probab=68.41 E-value=16 Score=27.39 Aligned_cols=94 Identities=21% Similarity=0.360 Sum_probs=56.2
Q ss_pred CcccccEEEEEcCCCCeEeCCCceEeC--CCCeeeCCCCceeccceeeeecccccccCCCCCCCCCceEEeCCCCCCcCC
Q psy14531 41 NNTYRGHAIFQCSWGYQLKGPPDIVCQ--KNGSWSGAIPECNAFFFFFFFFFFNPVHCPVPALPLNGHLIEDPTGGPYRV 118 (222)
Q Consensus 41 ~~~~g~~~~~~C~~gy~l~G~~~~~C~--~~g~W~~~~p~C~~~~~~~~~~~~~~~~C~~p~~~~~g~~~~~~~~~~~~~ 118 (222)
.+.++..+.|+|..|+.|.|.....=. +|..|. ..|.. +.= ..+.+-... ....-..
T Consensus 55 vN~~d~~~~~tCp~n~~i~G~~S~h~n~~eDR~w~---f~C~~------------~~~---~~~~~C~~~---t~~~N~~ 113 (152)
T PF14704_consen 55 VNNYDQPFNFTCPSNYYITGMQSYHDNSKEDRRWQ---FQCCR------------ING---ATLYNCYWT---TGYVNNY 113 (152)
T ss_pred hhccCCcEEEECCCCCEEEEEEEEecCCcccCceE---EEEEe------------cCC---ceeecceec---ccccccC
Confidence 356789999999999999988766654 478887 45544 110 011111100 0112245
Q ss_pred CCEEEEEcCCCCEEcCCCe--EEeCcCCeeeCCCCceeecC
Q psy14531 119 GAILQFACNDRHHLLGEET--IVCTETGRWSRAPPRCKARC 157 (222)
Q Consensus 119 g~~~~~~C~~gy~~~g~~~--~~C~~~g~Ws~~~p~C~~~C 157 (222)
...+.|+-..++.|.|-.. ---.+|-.|. .-.|+..|
T Consensus 114 d~~~~~~~~~~~~i~G~~S~~~~~~~DR~wk--~~~C~~~C 152 (152)
T PF14704_consen 114 DGPLDFTVPSGYVITGVSSYHDNSNEDRRWK--FRTCRVEC 152 (152)
T ss_pred CCcEEEEcCCCcEEEeEeeecCCCCcCceEE--EEEEeeeC
Confidence 6778888888898887432 2234566775 33466554
No 23
>KOG4564|consensus
Probab=53.82 E-value=15 Score=32.94 Aligned_cols=44 Identities=30% Similarity=0.626 Sum_probs=31.6
Q ss_pred CCCCEEEEEcCCCCEE-----cCCCeEEeCcCCeeeCCCCcee-----ecCCCCC
Q psy14531 117 RVGAILQFACNDRHHL-----LGEETIVCTETGRWSRAPPRCK-----ARCEYPG 161 (222)
Q Consensus 117 ~~g~~~~~~C~~gy~~-----~g~~~~~C~~~g~Ws~~~p~C~-----~~C~~p~ 161 (222)
..|+.+...|++.+.. .|...+.|.+||+|+..++. . ..|..+.
T Consensus 78 ~~G~~v~~~CP~yf~~~~~~~~~~v~R~C~~~G~W~~~~~~-~~W~nyt~C~~~~ 131 (473)
T KOG4564|consen 78 PAGTLVTVPCPDYFPGFSYSTSGNVTRNCTSNGTWSERPPS-RTWTNYTACGKNE 131 (473)
T ss_pred CCCceEEecCccccCCCcccCCCceEeecCCCCccCCCCCc-CCCCCchhccCcc
Confidence 5588888889886532 35678999999999986654 3 3576653
No 24
>PF12662 cEGF: Complement Clr-like EGF-like
Probab=53.60 E-value=10 Score=18.94 Aligned_cols=17 Identities=35% Similarity=0.823 Sum_probs=11.7
Q ss_pred EEcCCCCeeccCCCCCCcceeC
Q psy14531 183 VTCNDGYVKPLDITPTSGPYCQ 204 (222)
Q Consensus 183 y~C~~gy~~~~~~~~~~~~~C~ 204 (222)
-.|.+||.+..+ ..+|.
T Consensus 4 C~C~~Gy~l~~d-----~~~C~ 20 (24)
T PF12662_consen 4 CSCPPGYQLSPD-----GRSCE 20 (24)
T ss_pred eeCCCCCcCCCC-----CCccc
Confidence 468899997644 35665
No 25
>KOG4564|consensus
Probab=51.78 E-value=19 Score=32.28 Aligned_cols=34 Identities=24% Similarity=0.417 Sum_probs=24.0
Q ss_pred cccEEEEEcCCCCe-----EeCCCceEeCCCCeeeCCCC
Q psy14531 44 YRGHAIFQCSWGYQ-----LKGPPDIVCQKNGSWSGAIP 77 (222)
Q Consensus 44 ~g~~~~~~C~~gy~-----l~G~~~~~C~~~g~W~~~~p 77 (222)
.|+.+...|...+. -.|..++.|..||+|+...+
T Consensus 79 ~G~~v~~~CP~yf~~~~~~~~~~v~R~C~~~G~W~~~~~ 117 (473)
T KOG4564|consen 79 AGTLVTVPCPDYFPGFSYSTSGNVTRNCTSNGTWSERPP 117 (473)
T ss_pred CCceEEecCccccCCCcccCCCceEeecCCCCccCCCCC
Confidence 36666667755332 35778999999999997544
No 26
>PF09014 Sushi_2: Beta-2-glycoprotein-1 fifth domain; InterPro: IPR015104 The fifth domain of beta-2-glycoprotein-1 (b2GP-1) is composed of four well-defined anti-parallel beta-strands and two short alpha-helices, as well as a long highly flexible loop. It plays an important role in the binding of b2GP-1 to negatively charged compounds and subsequent capture for binding of anti-b2GP-1 antibodies []. ; PDB: 1C1Z_A 3OP8_B 2KRI_A 1QUB_A 1G4G_A 1G4F_A.
Probab=47.74 E-value=4.8 Score=26.88 Aligned_cols=38 Identities=29% Similarity=0.392 Sum_probs=21.1
Q ss_pred cccCCCCeEEEEcCCCCeeccCCCCCCcceeCCCCcccCCCCce
Q psy14531 173 FFYDPGDHIQVTCNDGYVKPLDITPTSGPYCQSDGTWSLDIPHC 216 (222)
Q Consensus 173 ~~~~~g~~v~y~C~~gy~~~~~~~~~~~~~C~~~G~W~~~~p~C 216 (222)
....||+.|.|.|+.--.--+- +...+|. ||+.. +|.|
T Consensus 28 ~~v~Hge~VsffCknkekkCsy---~~~~qC~-DG~l~--iP~C 65 (85)
T PF09014_consen 28 NGVLHGEIVSFFCKNKEKKCSY---TVDAQCI-DGTLE--IPEC 65 (85)
T ss_dssp T-BETT-EEEEEEEETTTTEEE---EEEEEEE-TTEE-----TT
T ss_pred CceeeCCEEEEEEcCCcccCCC---ccccEEe-cCccc--Cccc
Confidence 3457899999999743221111 1457897 89764 5666
No 27
>PF03436 DUF281: Domain of unknown function (DUF281) ; InterPro: IPR005098 This domain is found in a number of worm proteins and has no known function. The boundaries of the presumed domain are rather uncertain.
Probab=43.49 E-value=20 Score=22.49 Aligned_cols=14 Identities=29% Similarity=1.013 Sum_probs=11.6
Q ss_pred CCeEEeCcCCeeeC
Q psy14531 135 EETIVCTETGRWSR 148 (222)
Q Consensus 135 ~~~~~C~~~g~Ws~ 148 (222)
...++|++||+|.+
T Consensus 48 ~a~lTC~~DGtw~d 61 (62)
T PF03436_consen 48 EASLTCQDDGTWQD 61 (62)
T ss_pred eEEEEECCCcEEec
Confidence 35789999999975
Done!