RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14531
(222 letters)
>gnl|CDD|153056 cd00033, CCP, Complement control protein (CCP) modules (aka short
consensus repeats SCRs or SUSHI repeats) have been
identified in several proteins of the complement system.
SUSHI repeats (short complement-like repeat, SCR) are
abundant in complement control proteins. The complement
control protein (CCP) modules (also known as short
consensus repeats SCRs or SUSHI repeats) contain
approximately 60 amino acid residues and have been
identified in several proteins of the complement system.
Typically, 2 to 4 modules contribute to a binding site,
implying that the orientation of the modules to each
other is critical for function.
Length = 57
Score = 58.6 bits (142), Expect = 6e-12
Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 96 CPVPALPLNGHLIEDPTGGPYRVGAILQFACNDRHHLLGEETIVCTETGRWSRAPPRCK 154
CP P +P NG + + G Y G+ + ++CN+ + L+G TI CTE G WS PP C+
Sbjct: 1 CPPPPVPENGTVT--GSKGSYSYGSTVTYSCNEGYTLVGSSTITCTENGGWSPPPPTCE 57
Score = 49.4 bits (118), Expect = 1e-08
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
Query: 157 CEYPGEPQNGKIIPLKFFYDPGDHIQVTCNDGYVKPLDITPTSGPYCQSDGTWSLDIPHC 216
C P P+NG + K Y G + +CN+GY L + T C +G WS P C
Sbjct: 1 CPPPPVPENGTVTGSKGSYSYGSTVTYSCNEGYT--LVGSSTI--TCTENGGWSPPPPTC 56
Score = 47.5 bits (113), Expect = 8e-08
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 25 CPKI-VVENPYLTLVEQNNTYRGHAIFQCSWGYQLKGPPDIVCQKNGSWSGAIPEC 79
CP V EN +T + + +Y + C+ GY L G I C +NG WS P C
Sbjct: 1 CPPPPVPENGTVTGSKGSYSYGSTVTYSCNEGYTLVGSSTITCTENGGWSPPPPTC 56
>gnl|CDD|165167 PHA02817, PHA02817, EEV Host range protein; Provisional.
Length = 225
Score = 62.3 bits (151), Expect = 6e-12
Identities = 41/142 (28%), Positives = 68/142 (47%), Gaps = 19/142 (13%)
Query: 88 FFFFNPVHCPVPALPLNGHLIEDPTGGPYRVGAILQFACND-----RHHLLGEETIVCTE 142
+ + C P NG++ T Y +G+ + F C + R+ L+GE+ I+C +
Sbjct: 16 YSLCDLNKCCYPPSIKNGYIYNKKT--EYNIGSNVTFFCGNNTRGVRYTLVGEKNIICEK 73
Query: 143 TGRWSRAPPRCKA-RCEYPGEPQNGKI--IP--LKFFYDPGDHIQVTCNDGYVKPLDITP 197
G+W++ P CK RC +P QNG + IP KF+Y+ + +C G+V L T
Sbjct: 74 DGKWNKEFPVCKIIRCRFPAL-QNGFVNGIPDSKKFYYE--SEVSFSCKPGFV--LIGTK 128
Query: 198 TSGPYCQSDGTWSLDIPHCTNY 219
S C + +W +P C+
Sbjct: 129 YS--VCGINSSWIPKVPICSRD 148
Score = 44.5 bits (105), Expect = 1e-05
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Query: 11 GQWSGEVPTCQQIICPKIVVENPYLTLVEQNNT--YRGHAIFQCSWGYQLKGPPDIVCQK 68
G+W+ E P C+ I C ++N ++ + + Y F C G+ L G VC
Sbjct: 75 GKWNKEFPVCKIIRCRFPALQNGFVNGIPDSKKFYYESEVSFSCKPGFVLIGTKYSVCGI 134
Query: 69 NGSWSGAIPEC 79
N SW +P C
Sbjct: 135 NSSWIPKVPIC 145
Score = 38.0 bits (88), Expect = 0.002
Identities = 26/98 (26%), Positives = 39/98 (39%), Gaps = 13/98 (13%)
Query: 56 YQLKGPPDIVCQKNGSWSGAIPECNAFFFFFFFFFFNPVHCPVPALPLNGHLIEDPTGGP 115
Y L G +I+C+K+G W+ P C + C PAL NG + P
Sbjct: 61 YTLVGEKNIICEKDGKWNKEFPVCKI------------IRCRFPALQ-NGFVNGIPDSKK 107
Query: 116 YRVGAILQFACNDRHHLLGEETIVCTETGRWSRAPPRC 153
+ + + F+C L+G + VC W P C
Sbjct: 108 FYYESEVSFSCKPGFVLIGTKYSVCGINSSWIPKVPIC 145
>gnl|CDD|214478 smart00032, CCP, Domain abundant in complement control proteins;
SUSHI repeat; short complement-like repeat (SCR). The
complement control protein (CCP) modules (also known as
short consensus repeats SCRs or SUSHI repeats) contain
approximately 60 amino acid residues and have been
identified in several proteins of the complement system.
A missense mutation in seventh CCP domain causes
deficiency of the b subunit of factor XIII.
Length = 56
Score = 54.1 bits (130), Expect = 2e-10
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 96 CPVPALPLNGHLIEDPTGGPYRVGAILQFACNDRHHLLGEETIVCTETGRWSRAPPRC 153
CP P NG + + G Y G + ++C+ + L+G TI C E G WS PP C
Sbjct: 1 CPPPPDIENGTVT--SSSGTYSYGDTVTYSCDPGYTLIGSSTITCLENGTWSPPPPTC 56
Score = 48.7 bits (116), Expect = 2e-08
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
Query: 157 CEYPGEPQNGKIIPLKFFYDPGDHIQVTCNDGYVKPLDITPTSGPYCQSDGTWSLDIPHC 216
C P + +NG + Y GD + +C+ GY L + T C +GTWS P C
Sbjct: 1 CPPPPDIENGTVTSSSGTYSYGDTVTYSCDPGYT--LIGSSTI--TCLENGTWSPPPPTC 56
Score = 48.7 bits (116), Expect = 2e-08
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 25 CPKI-VVENPYLTLVEQNNTYRGHAIFQCSWGYQLKGPPDIVCQKNGSWSGAIPEC 79
CP +EN +T +Y + C GY L G I C +NG+WS P C
Sbjct: 1 CPPPPDIENGTVTSSSGTYSYGDTVTYSCDPGYTLIGSSTITCLENGTWSPPPPTC 56
>gnl|CDD|165022 PHA02639, PHA02639, EEV host range protein; Provisional.
Length = 295
Score = 54.3 bits (130), Expect = 8e-09
Identities = 50/179 (27%), Positives = 69/179 (38%), Gaps = 33/179 (18%)
Query: 50 FQCSWGYQLKGPPDIVCQK---NGSWSGAIPECNAFFFFFFFFFFNPVHCPVPALPLNGH 106
+ C+ Y L G C K N WS P C C P +NG
Sbjct: 48 YTCNTDYALIGDRFRTCIKDKNNAIWSNKAPFCML------------KECNDPPSIINGK 95
Query: 107 LIEDPTGGPYRVGAILQFACND----RHHLLGEETIVCTETGRWSRAPPRCKA-RCEYPG 161
+ Y+VG + + CN+ ++ L+G E I C + W PP CK C +P
Sbjct: 96 IYNKRE--MYKVGDEIYYVCNEHKGVQYSLVGNEKITCIQDKSWKPDPPICKMINCRFPA 153
Query: 162 EPQNGKI--IPL--KFFYDPGDHIQVTCNDGYVKPLDITPTSGPYCQSDGTWSLDIPHC 216
QNG I IP KF+Y + +C G+ D+ C + TW IP C
Sbjct: 154 L-QNGYINGIPSNKKFYYK--TRVGFSCKSGF----DLVGEKYSTCNINATWFPSIPTC 205
Score = 50.4 bits (120), Expect = 2e-07
Identities = 34/127 (26%), Positives = 51/127 (40%), Gaps = 6/127 (4%)
Query: 94 VHCPVPALPLNGHLIEDPTGGPYRVGAILQFACNDRHHLLGEETIVCTE---TGRWSRAP 150
++C P NG + E Y +G ++++ CN + L+G+ C + WS
Sbjct: 20 IYCDKPDDISNGFITE--LMEKYEIGKLIEYTCNTDYALIGDRFRTCIKDKNNAIWSNKA 77
Query: 151 PRCKAR-CEYPGEPQNGKIIPLKFFYDPGDHIQVTCNDGYVKPLDITPTSGPYCQSDGTW 209
P C + C P NGKI + Y GD I CN+ + C D +W
Sbjct: 78 PFCMLKECNDPPSIINGKIYNKREMYKVGDEIYYVCNEHKGVQYSLVGNEKITCIQDKSW 137
Query: 210 SLDIPHC 216
D P C
Sbjct: 138 KPDPPIC 144
Score = 40.8 bits (95), Expect = 3e-04
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
Query: 13 WSGEVPTCQQIICPKIVVENPYLTLVEQNNT--YRGHAIFQCSWGYQLKGPPDIVCQKNG 70
W + P C+ I C ++N Y+ + N Y+ F C G+ L G C N
Sbjct: 137 WKPDPPICKMINCRFPALQNGYINGIPSNKKFYYKTRVGFSCKSGFDLVGEKYSTCNINA 196
Query: 71 SWSGAIPEC 79
+W +IP C
Sbjct: 197 TWFPSIPTC 205
>gnl|CDD|215703 pfam00084, Sushi, Sushi domain (SCR repeat).
Length = 56
Score = 48.7 bits (116), Expect = 2e-08
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 96 CPVPALPLNGHLIEDPTGGPYRVGAILQFACNDRHHLLGEETIVCTETGRWSRAPPRC 153
CP P +G + T Y+VG+++++ C+ + L+G I C + G WS P C
Sbjct: 1 CPAPPPIPHGVI--STTKNSYQVGSVVRYECDPGYVLVGSSVITCQDDGTWSPPLPEC 56
Score = 41.0 bits (96), Expect = 1e-05
Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
Query: 157 CEYPGEPQNGKIIPLKFFYDPGDHIQVTCNDGYVKPLDITPTSGPYCQSDGTWSLDIPHC 216
C P +G I K Y G ++ C+ GYV T CQ DGTWS +P C
Sbjct: 1 CPAPPPIPHGVISTTKNSYQVGSVVRYECDPGYVLVGSSVIT----CQDDGTWSPPLPEC 56
Score = 40.6 bits (95), Expect = 2e-05
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 25 CPKI-VVENPYLTLVEQNNTYRGHAIFQCSWGYQLKGPPDIVCQKNGSWSGAIPEC 79
CP + + ++ + + ++C GY L G I CQ +G+WS +PEC
Sbjct: 1 CPAPPPIPHGVISTTKNSYQVGSVVRYECDPGYVLVGSSVITCQDDGTWSPPLPEC 56
>gnl|CDD|222943 PHA02927, PHA02927, secreted complement-binding protein;
Provisional.
Length = 263
Score = 52.0 bits (124), Expect = 4e-08
Identities = 44/172 (25%), Positives = 70/172 (40%), Gaps = 25/172 (14%)
Query: 50 FQCSWGYQLKGPPDIVCQ--KNGS--WSGAIPECNAFFFFFFFFFFNPVHCPVPALPLNG 105
+ C+ GYQL G C+ GS W+ P C + V C P NG
Sbjct: 110 YSCNSGYQLIGESKSYCELGSTGSMVWNPEAPICES------------VKCQSPPSISNG 157
Query: 106 HLIEDPTGGPYRVGAILQFACNDRHHLLGEETIVCTETGRWSRAPPRCK-ARCEYPGEPQ 164
+ Y G+++ ++CN + L+G ++C+ G WS PP C+ +C +P
Sbjct: 158 R--HNGYEDFYTDGSVVTYSCNSGYSLIGNSGVLCS-GGEWSD-PPTCQIVKCPHPTISN 213
Query: 165 NGKIIPLKFFYDPGDHIQVTCNDGYVKPLDITPTSGPYCQSDGTWSLDIPHC 216
K Y D++ C GY ++ +S C TW ++P C
Sbjct: 214 GYLSSGFKRSYSYNDNVDFKCKYGY----KLSGSSSSTCSPGNTWQPELPKC 261
Score = 48.5 bits (115), Expect = 5e-07
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Query: 9 SQGQWSGEVPTCQQIICPKIVVENPYLTL-VEQNNTYRGHAIFQCSWGYQLKGPPDIVCQ 67
S G+WS + PTCQ + CP + N YL+ +++ +Y + F+C +GY+L G C
Sbjct: 191 SGGEWS-DPPTCQIVKCPHPTISNGYLSSGFKRSYSYNDNVDFKCKYGYKLSGSSSSTCS 249
Query: 68 KNGSWSGAIPEC 79
+W +P+C
Sbjct: 250 PGNTWQPELPKC 261
Score = 47.0 bits (111), Expect = 2e-06
Identities = 39/126 (30%), Positives = 56/126 (44%), Gaps = 15/126 (11%)
Query: 96 CPVPALPLNGHLIEDPTGGPYRVGAILQFACNDRHHLLGEETIVC----TETGRWSRAPP 151
CP P NG L G G+ + ++CN + L+GE C T + W+ P
Sbjct: 86 CPSPRDIDNGQL----DIGGVDFGSSITYSCNSGYQLIGESKSYCELGSTGSMVWNPEAP 141
Query: 152 RCKA-RCEYPGEPQNGKIIPLKFFYDPGDHIQVTCNDGYVKPLDITPTSGPYCQSDGTWS 210
C++ +C+ P NG+ + FY G + +CN GY + SG C S G WS
Sbjct: 142 ICESVKCQSPPSISNGRHNGYEDFYTDGSVVTYSCNSGY----SLIGNSGVLC-SGGEWS 196
Query: 211 LDIPHC 216
D P C
Sbjct: 197 -DPPTC 201
Score = 36.6 bits (84), Expect = 0.007
Identities = 35/142 (24%), Positives = 50/142 (35%), Gaps = 17/142 (11%)
Query: 13 WSGEVPTCQQIICPKI-VVENPYLTLVEQNNTYRGHAIFQCSWGYQLKGPPDIVCQKNGS 71
W+ E P C+ + C + N E T + C+ GY L G ++C G
Sbjct: 136 WNPEAPICESVKCQSPPSISNGRHNGYEDFYTDGSVVTYSCNSGYSLIGNSGVLCS-GGE 194
Query: 72 WSGAIPECNAFFFFFFFFFFNPVHCPVPALPLNGHLIEDPTGGPYRVGAILQFACNDRHH 131
WS P C V CP P + NG+L Y + F C +
Sbjct: 195 WSDP-PTCQI------------VKCPHPTI-SNGYL-SSGFKRSYSYNDNVDFKCKYGYK 239
Query: 132 LLGEETIVCTETGRWSRAPPRC 153
L G + C+ W P+C
Sbjct: 240 LSGSSSSTCSPGNTWQPELPKC 261
>gnl|CDD|165176 PHA02831, PHA02831, EEV host range protein; Provisional.
Length = 268
Score = 43.1 bits (101), Expect = 4e-05
Identities = 21/69 (30%), Positives = 31/69 (44%)
Query: 11 GQWSGEVPTCQQIICPKIVVENPYLTLVEQNNTYRGHAIFQCSWGYQLKGPPDIVCQKNG 70
QW + P C+ I C ++N +L + E+ Y F+C G+ L G C N
Sbjct: 127 KQWVPKYPVCKLIRCKYPALQNGFLNVFEKKFYYGDIVNFKCKKGFILLGSSVSTCDINS 186
Query: 71 SWSGAIPEC 79
W IP+C
Sbjct: 187 IWYPGIPKC 195
>gnl|CDD|165263 PHA02954, PHA02954, EEV membrane glycoprotein; Provisional.
Length = 317
Score = 42.4 bits (99), Expect = 9e-05
Identities = 35/141 (24%), Positives = 59/141 (41%), Gaps = 22/141 (15%)
Query: 13 WSGEVPTCQQIICPKIVVENPYLTLVEQNNTYRGHAIFQCSWGYQLKGPPDIVCQKNGSW 72
W+ V TC C + +E+ V++ ++ H C GY++ G I C N SW
Sbjct: 119 WNDTV-TCPNAECQPLQLEHGSCQPVKEKYSFGEHITINCDVGYEVIGASYISCTAN-SW 176
Query: 73 SGAIPECNAFFFFFFFFFFNPVHCPVPALPLNGHLIEDPTGGPYRVGAILQFACNDRHHL 132
+ IP C C +P+L NG + +G + +G ++ +C L
Sbjct: 177 N-VIPSCQQ-------------KCDIPSLS-NGLI----SGSTFSIGGVIHLSCKSGFTL 217
Query: 133 LGEETIVCTETGRWSRAPPRC 153
G + C + G+W+ P C
Sbjct: 218 TGSPSSTCID-GKWNPVLPIC 237
Score = 30.8 bits (69), Expect = 0.48
Identities = 27/110 (24%), Positives = 47/110 (42%), Gaps = 15/110 (13%)
Query: 116 YRVGAILQFACNDRHHLLGEETIVCTETG---RWSRAPPRCKARCEYPGEPQNGKIIPLK 172
Y V + + C D + C E W+ A C+ P + ++G P+K
Sbjct: 91 YEVNSTITLICKDE-----TKYFRCEEKNGNTSWNDTVTCPNAECQ-PLQLEHGSCQPVK 144
Query: 173 FFYDPGDHIQVTCNDGYVKPLDITPTSGPYCQSDGTWSLDIPHCTNYTDV 222
Y G+HI + C+ GY ++ S C ++ +W++ IP C D+
Sbjct: 145 EKYSFGEHITINCDVGY----EVIGASYISCTAN-SWNV-IPSCQQKCDI 188
>gnl|CDD|215240 PLN02439, PLN02439, arginine decarboxylase.
Length = 559
Score = 30.0 bits (68), Expect = 0.98
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 6/43 (13%)
Query: 101 LPLNGHLIEDPTGGPYRVGAIL----QFACNDRHHLLGEETIV 139
LPL H +E GGPY +G L Q A H+L G ++V
Sbjct: 446 LPL--HELEKNGGGPYYLGMFLGGAYQEALGSLHNLFGGPSVV 486
>gnl|CDD|215271 PLN02491, PLN02491, carotenoid 9,10(9',10')-cleavage dioxygenase.
Length = 545
Score = 28.7 bits (64), Expect = 2.6
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 91 FNPVH---CPVPALPLNGHLIEDPTGGPYRVGAILQFA 125
F PV PV LP+ GHL E G RVG +F+
Sbjct: 56 FAPVRDETPPVKDLPVRGHLPECLNGEFVRVGPNPKFS 93
>gnl|CDD|220906 pfam10926, DUF2800, Protein of unknown function (DUF2800). This is
a family of uncharacterized proteins found in bacteria
and viruses. Some members of this family are annotated
as being Phi APSE P51-like proteins.
Length = 363
Score = 28.4 bits (64), Expect = 3.0
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 133 LGEETIVCTETGRWSRAPPRCKARCEY 159
G+ E R+ +A C+AR +
Sbjct: 204 AGDGEFKPGEHCRFCKAKATCRARAQA 230
>gnl|CDD|177150 MTH00083, COX3, cytochrome c oxidase subunit III; Provisional.
Length = 256
Score = 28.0 bits (63), Expect = 3.4
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 6/39 (15%)
Query: 82 FFFFFFFFFFNPVHCPVPAL-----PLNGHLIEDPTGGP 115
FFF F+ FF+ PV L P+ HL+ + G P
Sbjct: 89 FFFSIFWTFFDAALVPVHELGGVWSPIGIHLV-NYLGVP 126
>gnl|CDD|217257 pfam02867, Ribonuc_red_lgC, Ribonucleotide reductase, barrel
domain.
Length = 516
Score = 27.9 bits (63), Expect = 4.7
Identities = 12/37 (32%), Positives = 14/37 (37%), Gaps = 11/37 (29%)
Query: 112 TGGPYRVGAILQF--ACNDRHHLLGEETIV----CTE 142
TG PY + F A N + TI CTE
Sbjct: 185 TGEPY-----ILFKDAVNRHNPQKHLGTIKSSNLCTE 216
>gnl|CDD|234848 PRK00854, rocD, ornithine--oxo-acid transaminase; Reviewed.
Length = 401
Score = 27.4 bits (61), Expect = 6.2
Identities = 10/21 (47%), Positives = 13/21 (61%), Gaps = 5/21 (23%)
Query: 54 WGYQLKGPPD-----IVCQKN 69
WGY++KG P+ IVC N
Sbjct: 121 WGYEVKGVPEGQAEIIVCADN 141
>gnl|CDD|224115 COG1194, MutY, A/G-specific DNA glycosylase [DNA replication,
recombination, and repair].
Length = 342
Score = 26.9 bits (60), Expect = 9.8
Identities = 11/20 (55%), Positives = 12/20 (60%)
Query: 114 GPYRVGAILQFACNDRHHLL 133
GPY GAIL FA N +L
Sbjct: 122 GPYTAGAILSFAFNQPEPVL 141
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.143 0.502
Gapped
Lambda K H
0.267 0.0628 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,703,040
Number of extensions: 1081474
Number of successful extensions: 1255
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1229
Number of HSP's successfully gapped: 43
Length of query: 222
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 129
Effective length of database: 6,812,680
Effective search space: 878835720
Effective search space used: 878835720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 57 (26.0 bits)