Query psy14532
Match_columns 258
No_of_seqs 199 out of 1638
Neff 11.8
Searched_HMMs 46136
Date Fri Aug 16 22:16:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14532.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14532hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3513|consensus 100.0 4.8E-34 1E-38 235.2 23.9 229 1-250 330-563 (1051)
2 KOG3513|consensus 100.0 1.4E-30 3E-35 214.9 22.7 224 2-251 240-472 (1051)
3 KOG4221|consensus 100.0 9.7E-30 2.1E-34 209.9 22.5 232 2-256 140-379 (1381)
4 KOG4194|consensus 100.0 2.9E-29 6.3E-34 194.6 16.8 239 2-249 503-751 (873)
5 PHA02785 IL-beta-binding prote 100.0 1.5E-26 3.3E-31 176.6 21.2 210 11-249 35-267 (326)
6 KOG4222|consensus 99.9 9.6E-27 2.1E-31 191.4 16.3 233 2-253 31-273 (1281)
7 KOG4222|consensus 99.9 8.9E-26 1.9E-30 185.8 15.2 222 4-246 133-356 (1281)
8 KOG4221|consensus 99.9 5.3E-24 1.2E-28 176.5 21.9 226 4-251 43-283 (1381)
9 KOG4194|consensus 99.9 5.9E-24 1.3E-28 165.5 15.5 208 2-229 612-824 (873)
10 PHA02826 IL-1 receptor-like pr 99.9 9E-23 2E-27 146.9 17.2 166 9-189 29-211 (227)
11 PHA02785 IL-beta-binding prote 99.8 1.3E-19 2.9E-24 138.7 17.1 159 9-190 128-316 (326)
12 cd05851 Ig3_Contactin-1 Third 99.8 6.2E-18 1.3E-22 104.3 10.3 87 2-110 1-87 (88)
13 cd05762 Ig8_MLCK Eighth immuno 99.8 1.1E-17 2.4E-22 105.2 10.2 95 3-115 1-95 (98)
14 cd05747 Ig5_Titin_like M5, fif 99.7 2.9E-16 6.2E-21 98.0 10.0 89 2-108 3-91 (92)
15 cd04968 Ig3_Contactin_like Thi 99.7 7.9E-16 1.7E-20 95.3 10.6 87 2-110 1-87 (88)
16 PF07679 I-set: Immunoglobulin 99.7 5.2E-16 1.1E-20 96.8 9.5 90 3-110 1-90 (90)
17 cd05728 Ig4_Contactin-2-like F 99.7 7E-16 1.5E-20 94.7 9.7 84 5-110 2-85 (85)
18 cd05730 Ig3_NCAM-1_like Third 99.7 1.2E-15 2.7E-20 95.9 10.4 92 2-112 1-94 (95)
19 PHA02826 IL-1 receptor-like pr 99.7 2.5E-15 5.5E-20 108.5 12.7 124 120-251 30-180 (227)
20 cd05867 Ig4_L1-CAM_like Fourth 99.7 1.7E-15 3.7E-20 91.0 10.0 75 17-110 1-75 (76)
21 cd05745 Ig3_Peroxidasin Third 99.7 1E-15 2.2E-20 91.4 8.8 74 16-110 1-74 (74)
22 cd05762 Ig8_MLCK Eighth immuno 99.7 2.3E-15 5.1E-20 94.6 10.0 87 118-206 6-95 (98)
23 cd05745 Ig3_Peroxidasin Third 99.6 1.3E-15 2.8E-20 91.0 8.3 73 126-200 1-73 (74)
24 cd05848 Ig1_Contactin-5 First 99.6 4.8E-15 1E-19 92.6 11.2 89 2-108 1-92 (94)
25 cd05852 Ig5_Contactin-1 Fifth 99.6 1.5E-15 3.2E-20 89.9 8.4 73 17-110 1-73 (73)
26 cd05894 Ig_C5_MyBP-C C5 immuno 99.6 3.2E-15 7E-20 91.6 9.7 83 11-110 4-86 (86)
27 cd04975 Ig4_SCFR_like Fourth i 99.6 4.9E-15 1.1E-19 93.3 10.6 89 10-111 11-100 (101)
28 cd05850 Ig1_Contactin-2 First 99.6 9.6E-15 2.1E-19 91.3 11.5 90 2-109 1-93 (94)
29 cd07693 Ig1_Robo First immunog 99.6 6.5E-15 1.4E-19 93.8 11.0 94 2-110 1-99 (100)
30 cd05866 Ig1_NCAM-2 First immun 99.6 8.9E-15 1.9E-19 90.4 11.1 85 5-110 3-91 (92)
31 cd05740 Ig_CEACAM_D4 Fourth im 99.6 5.8E-15 1.2E-19 91.4 10.0 87 3-110 2-90 (91)
32 cd05852 Ig5_Contactin-1 Fifth 99.6 2.4E-15 5.2E-20 89.0 7.9 72 127-200 1-72 (73)
33 cd05865 Ig1_NCAM-1 First immun 99.6 8.4E-15 1.8E-19 91.4 10.6 91 5-110 3-95 (96)
34 cd05863 Ig2_VEGFR-3 Second imm 99.6 4.2E-15 9.2E-20 85.8 8.5 65 20-110 1-65 (67)
35 cd04972 Ig_TrkABC_d4 Fourth do 99.6 6.8E-15 1.5E-19 91.4 9.9 86 6-109 4-89 (90)
36 cd05868 Ig4_NrCAM Fourth immun 99.6 7E-15 1.5E-19 88.1 9.5 75 17-110 1-75 (76)
37 cd05870 Ig5_NCAM-2 Fifth immun 99.6 6.7E-15 1.5E-19 92.9 9.7 93 2-110 2-98 (98)
38 cd05737 Ig_Myomesin_like_C C-t 99.6 6E-15 1.3E-19 92.0 9.3 84 9-109 8-91 (92)
39 cd05724 Ig2_Robo Second immuno 99.6 9.9E-15 2.2E-19 90.1 10.1 83 8-109 2-85 (86)
40 cd05849 Ig1_Contactin-1 First 99.6 1.3E-14 2.8E-19 90.3 10.2 89 2-109 1-92 (93)
41 cd05869 Ig5_NCAM-1 Fifth immun 99.6 9.8E-15 2.1E-19 92.0 9.8 94 2-110 2-97 (97)
42 cd05722 Ig1_Neogenin First imm 99.6 1.5E-14 3.2E-19 90.9 10.4 89 5-110 2-95 (95)
43 cd05854 Ig6_Contactin-2 Sixth 99.6 1.8E-14 3.8E-19 88.2 10.2 83 18-114 1-85 (85)
44 cd05892 Ig_Myotilin_C C-termin 99.6 1E-14 2.2E-19 86.6 8.7 75 20-110 1-75 (75)
45 cd05771 IgC_Tapasin_R Tapasin- 99.6 2.4E-14 5.1E-19 96.5 11.4 114 74-190 1-132 (139)
46 cd05851 Ig3_Contactin-1 Third 99.6 1.8E-14 3.8E-19 88.9 9.8 81 118-201 7-87 (88)
47 cd04975 Ig4_SCFR_like Fourth i 99.6 1.1E-14 2.3E-19 91.7 8.6 81 120-202 11-100 (101)
48 cd05732 Ig5_NCAM-1_like Fifth 99.6 1.5E-14 3.2E-19 91.3 9.4 93 2-110 2-96 (96)
49 cd04973 Ig1_FGFR First immunog 99.6 1.4E-14 3E-19 87.5 8.6 78 9-109 1-78 (79)
50 cd05857 Ig2_FGFR Second immuno 99.6 2E-14 4.4E-19 88.4 9.2 82 12-110 4-85 (85)
51 cd05723 Ig4_Neogenin Fourth im 99.6 3.2E-14 7E-19 84.1 9.7 71 19-110 1-71 (71)
52 cd05853 Ig6_Contactin-4 Sixth 99.6 2.8E-14 6E-19 86.3 9.4 83 18-114 1-85 (85)
53 cd04978 Ig4_L1-NrCAM_like Four 99.6 3E-14 6.6E-19 85.7 9.3 75 17-110 1-75 (76)
54 cd04969 Ig5_Contactin_like Fif 99.6 2.9E-14 6.2E-19 84.9 8.9 73 17-110 1-73 (73)
55 cd05735 Ig8_DSCAM Eight immuno 99.6 3.9E-14 8.5E-19 87.3 9.6 86 17-115 1-86 (88)
56 cd05893 Ig_Palladin_C C-termin 99.6 3.2E-14 6.9E-19 84.6 8.8 75 20-110 1-75 (75)
57 cd04969 Ig5_Contactin_like Fif 99.6 2E-14 4.2E-19 85.6 7.9 72 127-200 1-72 (73)
58 cd05740 Ig_CEACAM_D4 Fourth im 99.6 4E-14 8.7E-19 87.6 9.2 79 120-201 11-90 (91)
59 cd05859 Ig4_PDGFR-alpha Fourth 99.6 7.3E-14 1.6E-18 88.1 10.4 89 11-111 12-100 (101)
60 cd05723 Ig4_Neogenin Fourth im 99.6 3.2E-14 6.9E-19 84.1 8.3 70 129-200 1-70 (71)
61 cd05749 Ig2_Tyro3_like Second 99.6 5E-14 1.1E-18 84.9 9.1 79 5-108 1-80 (81)
62 cd04970 Ig6_Contactin_like Six 99.6 6.1E-14 1.3E-18 86.2 9.7 83 18-114 1-85 (85)
63 cd04976 Ig2_VEGFR Second immun 99.6 5.3E-14 1.2E-18 83.0 9.0 69 20-110 1-69 (71)
64 cd05737 Ig_Myomesin_like_C C-t 99.6 4.5E-14 9.7E-19 88.1 8.9 80 119-200 8-91 (92)
65 cd05724 Ig2_Robo Second immuno 99.6 7E-14 1.5E-18 86.3 9.7 80 120-200 4-85 (86)
66 cd05728 Ig4_Contactin-2-like F 99.6 5E-14 1.1E-18 86.4 8.7 80 118-200 5-84 (85)
67 cd05738 Ig2_RPTP_IIa_LAR_like 99.5 8.1E-14 1.8E-18 83.1 9.3 73 20-110 1-73 (74)
68 KOG3515|consensus 99.5 1.6E-13 3.4E-18 112.1 13.2 223 4-249 9-251 (741)
69 cd05891 Ig_M-protein_C C-termi 99.5 8.6E-14 1.9E-18 86.6 9.1 85 8-109 7-91 (92)
70 cd04977 Ig1_NCAM-1_like First 99.5 9.2E-14 2E-18 86.5 9.2 89 5-110 3-92 (92)
71 cd05760 Ig2_PTK7 Second immuno 99.5 1.8E-13 4E-18 82.2 10.0 74 20-111 1-75 (77)
72 cd05864 Ig2_VEGFR-2 Second imm 99.5 1.1E-13 2.4E-18 81.0 8.7 61 20-102 1-61 (70)
73 cd05738 Ig2_RPTP_IIa_LAR_like 99.5 5.9E-14 1.3E-18 83.7 7.6 71 130-201 1-73 (74)
74 cd05773 Ig8_hNephrin_like Eigh 99.5 1.6E-13 3.5E-18 88.0 10.2 100 2-114 4-108 (109)
75 cd05866 Ig1_NCAM-2 First immun 99.5 9E-14 1.9E-18 85.9 8.3 81 119-201 7-91 (92)
76 cd05876 Ig3_L1-CAM Third immun 99.5 1.2E-13 2.5E-18 81.7 8.5 70 20-110 1-70 (71)
77 cd05894 Ig_C5_MyBP-C C5 immuno 99.5 1E-13 2.2E-18 85.0 8.4 78 121-200 4-85 (86)
78 cd05892 Ig_Myotilin_C C-termin 99.5 6.2E-14 1.4E-18 83.3 7.3 69 130-200 1-74 (75)
79 cd05739 Ig3_RPTP_IIa_LAR_like 99.5 2E-13 4.4E-18 79.9 9.3 68 17-108 1-68 (69)
80 cd05756 Ig1_IL1R_like First im 99.5 7.3E-14 1.6E-18 86.9 7.9 83 10-110 7-94 (94)
81 cd05722 Ig1_Neogenin First imm 99.5 1.5E-13 3.2E-18 86.3 9.3 82 119-201 6-95 (95)
82 cd05735 Ig8_DSCAM Eight immuno 99.5 1.2E-13 2.6E-18 85.1 8.7 78 127-206 1-86 (88)
83 cd05744 Ig_Myotilin_C_like Imm 99.5 2.2E-13 4.7E-18 81.3 9.5 75 20-110 1-75 (75)
84 cd05865 Ig1_NCAM-1 First immun 99.5 1.6E-13 3.5E-18 85.6 9.3 81 120-201 8-95 (96)
85 cd05730 Ig3_NCAM-1_like Third 99.5 1.8E-13 3.9E-18 86.0 9.5 81 121-203 12-94 (95)
86 cd05746 Ig4_Peroxidasin Fourth 99.5 5.1E-14 1.1E-18 82.8 6.5 61 130-191 1-61 (69)
87 cd05746 Ig4_Peroxidasin Fourth 99.5 9.8E-14 2.1E-18 81.5 7.7 68 20-108 1-68 (69)
88 cd05726 Ig4_Robo Fhird immunog 99.5 2.1E-13 4.5E-18 84.7 9.5 85 17-114 1-85 (90)
89 cd04968 Ig3_Contactin_like Thi 99.5 2.7E-13 5.8E-18 83.9 9.9 80 119-201 8-87 (88)
90 cd05849 Ig1_Contactin-1 First 99.5 1.6E-13 3.4E-18 85.3 8.9 74 127-200 19-92 (93)
91 cd05876 Ig3_L1-CAM Third immun 99.5 1E-13 2.3E-18 81.9 7.7 70 130-201 1-70 (71)
92 cd05859 Ig4_PDGFR-alpha Fourth 99.5 1.4E-13 2.9E-18 86.9 8.5 80 121-202 12-100 (101)
93 cd05752 Ig1_FcgammaR_like Frst 99.5 9.4E-14 2E-18 83.2 7.3 67 3-97 1-68 (78)
94 cd05748 Ig_Titin_like Immunogl 99.5 2E-13 4.4E-18 81.5 8.8 74 19-110 1-74 (74)
95 cd05763 Ig_1 Subgroup of the i 99.5 1.9E-13 4.1E-18 81.9 8.6 74 20-110 1-74 (75)
96 cd05747 Ig5_Titin_like M5, fif 99.5 2.5E-13 5.5E-18 84.7 9.5 75 116-191 7-84 (92)
97 cd05867 Ig4_L1-CAM_like Fourth 99.5 1.8E-13 3.9E-18 82.1 8.3 73 127-201 1-75 (76)
98 cd05725 Ig3_Robo Third immunog 99.5 1.7E-13 3.7E-18 80.6 8.1 69 20-110 1-69 (69)
99 cd05863 Ig2_VEGFR-3 Second imm 99.5 1E-13 2.2E-18 80.0 6.9 65 130-201 1-65 (67)
100 cd05848 Ig1_Contactin-5 First 99.5 2.3E-13 5E-18 85.0 8.9 74 126-199 18-92 (94)
101 cd05868 Ig4_NrCAM Fourth immun 99.5 2E-13 4.4E-18 81.7 7.9 73 127-201 1-75 (76)
102 cd05893 Ig_Palladin_C C-termin 99.5 1.3E-13 2.8E-18 82.0 6.8 69 130-200 1-74 (75)
103 cd05856 Ig2_FGFRL1-like Second 99.5 2.3E-13 4.9E-18 83.2 8.2 78 12-109 4-81 (82)
104 cd05753 Ig2_FcgammaR_like Seco 99.5 2.3E-13 5E-18 82.8 8.0 78 8-110 5-83 (83)
105 cd05726 Ig4_Robo Fhird immunog 99.5 4.6E-13 1E-17 83.1 9.3 76 127-204 1-84 (90)
106 cd05764 Ig_2 Subgroup of the i 99.5 5.3E-13 1.1E-17 79.7 9.1 73 17-110 1-74 (74)
107 cd04976 Ig2_VEGFR Second immun 99.5 2.4E-13 5.3E-18 80.2 7.4 69 130-201 1-69 (71)
108 cd07693 Ig1_Robo First immunog 99.5 6.9E-13 1.5E-17 84.4 10.0 83 118-201 7-99 (100)
109 cd05891 Ig_M-protein_C C-termi 99.5 4.5E-13 9.7E-18 83.3 8.8 79 119-199 8-90 (92)
110 cd04972 Ig_TrkABC_d4 Fourth do 99.5 4.2E-13 9E-18 83.3 8.4 80 119-200 7-89 (90)
111 cd05743 Ig_Perlecan_D2_like Im 99.5 4.2E-13 9E-18 80.9 8.2 69 17-102 1-69 (78)
112 cd04978 Ig4_L1-NrCAM_like Four 99.5 3.7E-13 8E-18 80.9 8.0 73 127-201 1-75 (76)
113 cd05854 Ig6_Contactin-2 Sixth 99.5 3.7E-13 8E-18 82.3 8.0 76 128-205 1-85 (85)
114 cd04967 Ig1_Contactin First Ig 99.5 1.3E-12 2.7E-17 81.3 10.5 83 3-103 2-87 (91)
115 cd05764 Ig_2 Subgroup of the i 99.5 5.4E-13 1.2E-17 79.7 8.5 72 127-200 1-73 (74)
116 cd05850 Ig1_Contactin-2 First 99.5 7.3E-13 1.6E-17 82.7 9.3 73 127-200 19-93 (94)
117 cd05758 Ig5_KIRREL3-like Fifth 99.5 1E-12 2.2E-17 82.9 10.1 94 2-108 2-97 (98)
118 cd05774 Ig_CEACAM_D1 First imm 99.5 7.5E-13 1.6E-17 83.6 9.3 102 6-109 2-104 (105)
119 cd04973 Ig1_FGFR First immunog 99.5 7.8E-13 1.7E-17 79.8 8.9 69 120-191 2-70 (79)
120 cd04974 Ig3_FGFR Third immunog 99.5 7.5E-13 1.6E-17 82.1 8.8 85 17-110 1-89 (90)
121 cd04970 Ig6_Contactin_like Six 99.5 4.6E-13 1E-17 82.2 7.8 76 128-205 1-85 (85)
122 cd05870 Ig5_NCAM-2 Fifth immun 99.5 1E-12 2.2E-17 82.9 9.5 84 115-200 4-97 (98)
123 cd05853 Ig6_Contactin-4 Sixth 99.5 7.2E-13 1.6E-17 80.2 8.3 76 128-205 1-85 (85)
124 cd05733 Ig6_L1-CAM_like Sixth 99.5 6.9E-13 1.5E-17 79.7 8.2 72 20-108 1-76 (77)
125 cd05748 Ig_Titin_like Immunogl 99.5 6E-13 1.3E-17 79.5 7.8 70 129-200 1-73 (74)
126 cd05731 Ig3_L1-CAM_like Third 99.5 7.7E-13 1.7E-17 78.4 8.2 70 20-110 1-70 (71)
127 cd05732 Ig5_NCAM-1_like Fifth 99.4 1.1E-12 2.3E-17 82.7 9.3 85 114-200 3-95 (96)
128 cd05857 Ig2_FGFR Second immuno 99.4 9.1E-13 2E-17 81.0 8.5 78 122-201 4-85 (85)
129 cd05765 Ig_3 Subgroup of the i 99.4 8.6E-13 1.9E-17 80.4 8.3 81 17-110 1-81 (81)
130 cd05875 Ig6_hNeurofascin_like 99.4 1.5E-12 3.2E-17 78.0 9.0 72 20-108 1-76 (77)
131 cd04979 Ig_Semaphorin_C Immuno 99.4 1.4E-12 3.1E-17 80.8 9.2 87 8-112 2-88 (89)
132 cd05744 Ig_Myotilin_C_like Imm 99.4 7.2E-13 1.6E-17 79.0 7.6 69 130-200 1-74 (75)
133 cd07702 Ig2_VEGFR-1 Second imm 99.4 4.1E-13 8.8E-18 78.7 6.2 60 130-190 1-60 (72)
134 cd04977 Ig1_NCAM-1_like First 99.4 1.4E-12 3E-17 81.2 9.0 79 120-200 8-91 (92)
135 cd05734 Ig7_DSCAM Seventh immu 99.4 9.4E-13 2E-17 79.6 8.1 71 130-201 1-79 (79)
136 cd05773 Ig8_hNephrin_like Eigh 99.4 1.8E-12 3.9E-17 83.2 9.7 79 126-205 22-108 (109)
137 cd05864 Ig2_VEGFR-2 Second imm 99.4 6.3E-13 1.4E-17 77.7 7.0 59 130-191 1-59 (70)
138 cd07702 Ig2_VEGFR-1 Second imm 99.4 1.6E-12 3.4E-17 76.2 8.6 62 20-101 1-62 (72)
139 cd05855 Ig_TrkB_d5 Fifth domai 99.4 1.4E-12 3E-17 77.8 8.3 75 22-109 3-77 (79)
140 cd05725 Ig3_Robo Third immunog 99.4 9.2E-13 2E-17 77.5 7.6 68 130-200 1-68 (69)
141 cd05734 Ig7_DSCAM Seventh immu 99.4 1.2E-12 2.7E-17 79.1 8.3 79 20-110 1-79 (79)
142 cd05869 Ig5_NCAM-1 Fifth immun 99.4 2.4E-12 5.2E-17 81.1 9.9 77 122-200 12-96 (97)
143 cd05731 Ig3_L1-CAM_like Third 99.4 5.9E-13 1.3E-17 78.9 6.7 70 130-201 1-70 (71)
144 cd05874 Ig6_NrCAM Sixth immuno 99.4 1.8E-12 4E-17 77.6 8.8 72 20-108 1-76 (77)
145 cd05760 Ig2_PTK7 Second immuno 99.4 1.8E-12 3.9E-17 77.9 8.2 72 130-202 1-75 (77)
146 PF07679 I-set: Immunoglobulin 99.4 6.4E-13 1.4E-17 82.7 6.5 81 118-200 6-89 (90)
147 cd04971 Ig_TrKABC_d5 Fifth dom 99.4 2.3E-12 4.9E-17 77.8 8.5 77 22-109 3-79 (81)
148 cd05758 Ig5_KIRREL3-like Fifth 99.4 3.2E-12 7E-17 80.6 9.6 79 113-191 2-90 (98)
149 cd05749 Ig2_Tyro3_like Second 99.4 1.6E-12 3.5E-17 78.3 7.7 75 119-199 5-80 (81)
150 cd05736 Ig2_Follistatin_like S 99.4 4.8E-12 1E-16 76.0 9.7 73 20-111 1-74 (76)
151 cd05873 Ig_Sema4D_like Immunog 99.4 4.1E-12 8.9E-17 77.2 9.2 70 8-98 2-71 (87)
152 cd05743 Ig_Perlecan_D2_like Im 99.4 1.6E-12 3.4E-17 78.4 7.4 65 127-192 1-68 (78)
153 cd05855 Ig_TrkB_d5 Fifth domai 99.4 1.5E-12 3.2E-17 77.7 6.9 67 132-200 3-77 (79)
154 cd05754 Ig3_Perlecan_like Thir 99.4 2.2E-12 4.7E-17 79.2 7.9 78 6-107 5-83 (85)
155 cd05858 Ig3_FGFR-2 Third immun 99.4 3E-12 6.5E-17 79.4 8.5 85 17-110 1-89 (90)
156 cd05856 Ig2_FGFRL1-like Second 99.4 2.1E-12 4.5E-17 78.9 7.6 76 123-200 5-81 (82)
157 PF13895 Ig_2: Immunoglobulin 99.4 5.4E-12 1.2E-16 76.7 8.8 80 2-110 1-80 (80)
158 cd04971 Ig_TrKABC_d5 Fifth dom 99.4 2.7E-12 5.8E-17 77.5 7.0 68 131-200 2-79 (81)
159 cd05756 Ig1_IL1R_like First im 99.4 4.4E-12 9.5E-17 78.9 8.2 78 121-200 8-93 (94)
160 cd05874 Ig6_NrCAM Sixth immuno 99.4 4.3E-12 9.3E-17 76.0 7.3 70 130-199 1-76 (77)
161 cd05763 Ig_1 Subgroup of the i 99.4 7.6E-12 1.6E-16 74.9 8.4 70 130-201 1-74 (75)
162 cd05882 Ig1_Necl-1 First (N-te 99.4 4E-12 8.8E-17 79.1 7.3 80 10-97 5-84 (95)
163 cd05750 Ig_Pro_neuregulin Immu 99.4 5.1E-12 1.1E-16 75.7 7.5 69 20-102 1-70 (75)
164 cd05875 Ig6_hNeurofascin_like 99.4 6.4E-12 1.4E-16 75.3 7.8 70 130-199 1-76 (77)
165 cd05742 Ig1_VEGFR_like First i 99.3 7.7E-12 1.7E-16 76.6 8.1 81 17-110 1-83 (84)
166 cd05739 Ig3_RPTP_IIa_LAR_like 99.3 8.3E-12 1.8E-16 73.0 7.8 61 127-191 1-61 (69)
167 cd05861 Ig1_PDGFR-alphabeta Fr 99.3 1.9E-11 4.1E-16 74.6 9.4 81 17-111 1-83 (84)
168 cd04974 Ig3_FGFR Third immunog 99.3 1.4E-11 3.1E-16 76.3 8.9 73 127-201 1-89 (90)
169 cd05729 Ig2_FGFR_like Second i 99.3 1.8E-11 4E-16 75.3 9.4 81 12-109 4-84 (85)
170 cd05733 Ig6_L1-CAM_like Sixth 99.3 7.2E-12 1.6E-16 75.2 7.1 70 130-199 1-76 (77)
171 cd05757 Ig2_IL1R_like Second i 99.3 1.5E-11 3.3E-16 76.0 8.6 71 11-102 4-79 (92)
172 cd05873 Ig_Sema4D_like Immunog 99.3 1.4E-11 3E-16 74.9 7.4 68 120-189 4-71 (87)
173 cd07690 Ig1_CD4 First immunogl 99.3 1.3E-11 2.7E-16 76.4 7.3 86 12-100 2-90 (94)
174 cd05771 IgC_Tapasin_R Tapasin- 99.3 1.1E-11 2.5E-16 83.5 7.8 78 166-245 2-80 (139)
175 cd05898 Ig5_KIRREL3 Fifth immu 99.3 3.6E-11 7.8E-16 74.8 9.3 94 2-108 2-97 (98)
176 cd07701 Ig1_Necl-3 First (N-te 99.3 1.4E-11 2.9E-16 77.0 7.5 87 9-109 4-94 (95)
177 cd05858 Ig3_FGFR-2 Third immun 99.3 1.9E-11 4E-16 75.9 7.9 73 127-201 1-89 (90)
178 cd05765 Ig_3 Subgroup of the i 99.3 2.1E-11 4.5E-16 74.2 8.0 72 127-200 1-80 (81)
179 cd05741 Ig_CEACAM_D1_like Firs 99.3 2.1E-11 4.6E-16 76.1 8.2 91 17-109 1-91 (92)
180 cd04967 Ig1_Contactin First Ig 99.3 2.3E-11 5E-16 75.6 8.0 68 126-194 18-87 (91)
181 cd04979 Ig_Semaphorin_C Immuno 99.3 3.2E-11 7E-16 74.7 8.6 79 121-202 5-87 (89)
182 cd05752 Ig1_FcgammaR_like Frst 99.3 2.6E-11 5.7E-16 72.6 7.9 71 119-201 7-78 (78)
183 cd05753 Ig2_FcgammaR_like Seco 99.3 2.7E-11 5.9E-16 73.6 7.7 75 121-201 8-83 (83)
184 cd05736 Ig2_Follistatin_like S 99.3 4.9E-11 1.1E-15 71.5 8.4 71 130-202 1-74 (76)
185 PHA03376 BARF1; Provisional 99.3 9.7E-11 2.1E-15 79.1 10.4 133 11-151 20-163 (221)
186 cd05727 Ig2_Contactin-2-like S 99.3 1.9E-11 4.1E-16 75.4 6.6 73 10-99 11-84 (96)
187 cd05845 Ig2_L1-CAM_like Second 99.3 2.6E-11 5.7E-16 74.6 6.8 79 2-99 2-83 (95)
188 cd05750 Ig_Pro_neuregulin Immu 99.2 2.7E-11 5.8E-16 72.6 6.3 61 130-191 1-68 (75)
189 cd05895 Ig_Pro_neuregulin-1 Im 99.2 5.6E-11 1.2E-15 71.3 7.4 69 20-102 1-71 (76)
190 cd05727 Ig2_Contactin-2-like S 99.2 9.4E-11 2E-15 72.3 7.9 70 120-190 11-84 (96)
191 cd05897 Ig2_IL1R2_like Second 99.2 1.7E-10 3.6E-15 71.3 8.7 72 11-100 4-80 (95)
192 cd05871 Ig_Semaphorin_classIII 99.2 2E-10 4.3E-15 71.0 9.1 85 11-111 5-89 (91)
193 smart00408 IGc2 Immunoglobulin 99.2 1.9E-10 4.2E-15 66.1 8.2 62 16-98 1-62 (63)
194 cd05757 Ig2_IL1R_like Second i 99.2 1.9E-10 4.1E-15 71.1 8.3 68 122-191 5-77 (92)
195 cd05742 Ig1_VEGFR_like First i 99.2 1.1E-10 2.4E-15 71.4 6.9 73 127-201 1-83 (84)
196 cd05898 Ig5_KIRREL3 Fifth immu 99.2 5.3E-10 1.2E-14 69.5 9.8 85 113-198 2-96 (98)
197 cd05896 Ig1_IL1RAPL-1_like Fir 99.2 3.7E-10 8E-15 69.9 8.5 85 10-109 8-103 (104)
198 cd05754 Ig3_Perlecan_like Thir 99.2 2.6E-10 5.6E-15 70.0 8.0 69 119-191 8-77 (85)
199 cd05717 Ig1_Necl-1-3_like Firs 99.2 2E-10 4.4E-15 72.0 7.4 91 9-109 4-94 (95)
200 cd05845 Ig2_L1-CAM_like Second 99.2 2.6E-10 5.7E-15 70.2 7.5 70 120-190 11-83 (95)
201 cd05729 Ig2_FGFR_like Second i 99.2 4.5E-10 9.7E-15 69.0 8.6 77 122-200 4-84 (85)
202 smart00408 IGc2 Immunoglobulin 99.2 3.9E-10 8.5E-15 64.8 7.9 62 126-189 1-62 (63)
203 cd05861 Ig1_PDGFR-alphabeta Fr 99.1 4E-10 8.6E-15 68.7 8.1 75 127-202 1-83 (84)
204 cd05879 Ig_P0 Immunoglobulin ( 99.1 9.5E-10 2.1E-14 70.9 9.6 92 8-100 4-105 (116)
205 cd05775 Ig_SLAM-CD84_like_N N- 99.1 3.1E-10 6.7E-15 71.3 7.0 94 15-111 2-97 (97)
206 cd05862 Ig1_VEGFR First immuno 99.1 1.2E-09 2.6E-14 66.9 9.3 83 17-111 1-85 (86)
207 cd05880 Ig_EVA1 Immunoglobulin 99.1 1.2E-09 2.7E-14 70.7 9.5 88 8-100 4-104 (115)
208 cd05900 Ig_Aggrecan Immunoglob 99.1 8.6E-10 1.9E-14 70.6 8.6 89 16-111 1-109 (112)
209 cd05882 Ig1_Necl-1 First (N-te 99.1 7.7E-10 1.7E-14 68.8 8.1 68 120-188 5-84 (95)
210 smart00409 IG Immunoglobulin. 99.1 2.6E-09 5.6E-14 65.4 10.4 83 10-110 2-85 (86)
211 smart00410 IG_like Immunoglobu 99.1 2.6E-09 5.6E-14 65.4 10.4 83 10-110 2-85 (86)
212 cd05751 Ig1_LILRB1_like First 99.1 8E-10 1.7E-14 68.5 7.9 87 2-110 2-90 (91)
213 KOG3515|consensus 99.1 1.7E-09 3.7E-14 89.0 11.9 226 10-249 105-345 (741)
214 cd07701 Ig1_Necl-3 First (N-te 99.1 7.4E-10 1.6E-14 69.2 7.7 70 119-189 4-85 (95)
215 PF13895 Ig_2: Immunoglobulin 99.1 3E-10 6.5E-15 68.9 5.8 72 122-201 9-80 (80)
216 PF07686 V-set: Immunoglobulin 99.1 7E-10 1.5E-14 72.2 7.9 105 5-110 4-114 (114)
217 cd05895 Ig_Pro_neuregulin-1 Im 99.1 3.5E-10 7.5E-15 67.8 5.9 61 130-191 1-69 (76)
218 cd05885 Ig2_Necl-4 Second immu 99.1 1.9E-09 4.2E-14 64.1 8.5 62 129-191 1-68 (80)
219 PF00047 ig: Immunoglobulin do 99.1 5.3E-10 1.1E-14 64.6 5.9 58 127-185 1-64 (64)
220 PF00047 ig: Immunoglobulin do 99.1 4.2E-10 9.2E-15 65.0 5.4 63 17-94 1-64 (64)
221 cd05878 Ig_Aggrecan_like Immun 99.1 1.3E-09 2.9E-14 69.9 8.0 90 16-112 1-108 (110)
222 cd05751 Ig1_LILRB1_like First 99.1 1.4E-09 3E-14 67.5 7.8 86 114-201 3-90 (91)
223 cd05872 Ig_Sema4B_like Immunog 99.0 2.9E-09 6.3E-14 64.2 8.6 80 10-111 4-83 (85)
224 cd05877 Ig_LP_like Immunoglobu 99.0 3.7E-09 8E-14 67.8 9.5 93 16-111 1-103 (106)
225 cd04983 IgV_TCR_alpha_like Imm 99.0 1.3E-09 2.7E-14 70.4 7.3 87 6-98 2-93 (109)
226 cd05871 Ig_Semaphorin_classIII 99.0 3.2E-09 7E-14 65.6 8.7 78 122-202 6-89 (91)
227 cd05713 Ig_MOG_like Immunoglob 99.0 2.6E-09 5.7E-14 67.7 8.5 88 17-110 1-99 (100)
228 cd05715 Ig_P0-like Immunoglobu 99.0 4.4E-09 9.5E-14 68.5 9.7 92 8-100 4-105 (116)
229 cd05714 Ig_CSPGs_LP Immunoglob 99.0 1.4E-09 3E-14 69.8 7.0 94 16-112 1-104 (106)
230 cd05860 Ig4_SCFR Fourth immuno 99.0 5.4E-09 1.2E-13 64.6 9.1 89 10-111 11-100 (101)
231 cd05897 Ig2_IL1R2_like Second 99.0 2.2E-09 4.8E-14 66.3 6.9 68 122-190 5-79 (95)
232 cd05881 Ig1_Necl-2 First (N-te 99.0 2.8E-09 6.1E-14 65.9 7.3 81 10-98 5-85 (95)
233 cd05846 Ig1_MRC-OX-2_like Firs 99.0 6.6E-09 1.4E-13 65.3 9.0 92 17-111 1-97 (97)
234 PHA02987 Ig domain OX-2-like p 99.0 3.9E-09 8.5E-14 71.9 8.3 98 9-114 22-125 (189)
235 cd05899 IgV_TCR_beta Immunoglo 99.0 2.2E-09 4.7E-14 69.3 6.8 87 6-97 2-94 (110)
236 smart00410 IG_like Immunoglobu 99.0 1E-08 2.2E-13 62.7 9.6 79 121-201 3-85 (86)
237 smart00409 IG Immunoglobulin. 99.0 1E-08 2.2E-13 62.7 9.6 79 121-201 3-85 (86)
238 cd05718 Ig1_PVR_like First imm 99.0 5E-09 1.1E-13 66.1 7.9 89 18-110 1-97 (98)
239 cd05886 Ig1_Nectin-1_like Firs 99.0 1.1E-08 2.4E-13 64.0 9.1 39 72-111 61-99 (99)
240 cd00099 IgV Immunoglobulin var 99.0 4.6E-09 1E-13 67.3 7.7 84 13-99 2-91 (105)
241 cd05885 Ig2_Necl-4 Second immu 99.0 1.2E-08 2.7E-13 60.7 8.7 68 19-101 1-69 (80)
242 cd05872 Ig_Sema4B_like Immunog 98.9 1.1E-08 2.5E-13 61.7 8.4 65 121-188 5-69 (85)
243 PF13927 Ig_3: Immunoglobulin 98.9 2.3E-09 5.1E-14 64.0 5.5 74 2-96 1-75 (75)
244 cd05888 Ig1_Nectin-4_like Frst 98.9 1.5E-08 3.2E-13 64.0 9.2 86 18-110 1-99 (100)
245 PHA03376 BARF1; Provisional 98.9 3.9E-08 8.4E-13 66.8 10.9 119 121-242 20-161 (221)
246 cd05883 Ig2_Necl-2 Second immu 98.9 1.2E-08 2.7E-13 60.8 7.7 73 130-203 2-81 (82)
247 cd04980 IgV_L_kappa Immunoglob 98.9 2E-08 4.2E-13 64.4 9.1 88 5-97 3-93 (106)
248 cd05717 Ig1_Necl-1-3_like Firs 98.9 1.4E-08 3E-13 63.7 8.2 70 119-189 4-85 (95)
249 cd05862 Ig1_VEGFR First immuno 98.9 1.3E-08 2.8E-13 62.3 7.7 74 127-202 1-85 (86)
250 cd05887 Ig1_Nectin-3_like Firs 98.9 1.7E-08 3.7E-13 62.6 8.2 90 18-110 1-95 (96)
251 cd05902 Ig_Neurocan Immunoglob 98.9 8.8E-09 1.9E-13 65.7 7.2 90 17-111 2-107 (110)
252 cd05711 Ig_FcalphaRI Immunoglo 98.9 1.2E-08 2.7E-13 63.5 7.7 76 2-96 1-76 (94)
253 cd05759 Ig2_KIRREL3-like Secon 98.9 2.2E-08 4.7E-13 60.9 8.3 70 130-200 2-81 (82)
254 cd04982 IgV_TCR_gamma Immunogl 98.9 2.3E-08 5E-13 65.2 8.9 87 7-97 3-99 (116)
255 cd05774 Ig_CEACAM_D1 First imm 98.9 2.5E-08 5.4E-13 63.1 8.7 78 121-199 7-103 (105)
256 cd05901 Ig_Versican Immunoglob 98.9 2.6E-08 5.6E-13 63.7 8.2 91 17-111 2-114 (117)
257 cd05741 Ig_CEACAM_D1_like Firs 98.8 2.4E-08 5.2E-13 62.2 7.8 73 127-200 1-91 (92)
258 cd05889 Ig1_DNAM-1_like First 98.8 2.3E-08 5E-13 62.1 7.5 84 18-108 1-93 (96)
259 cd05860 Ig4_SCFR Fourth immuno 98.8 3.3E-08 7.2E-13 61.1 7.9 80 120-201 11-99 (101)
260 cd07690 Ig1_CD4 First immunogl 98.8 1.1E-08 2.4E-13 63.3 5.7 67 123-190 3-89 (94)
261 cd05759 Ig2_KIRREL3-like Secon 98.8 8.1E-08 1.8E-12 58.4 9.0 70 19-100 1-71 (82)
262 cd05896 Ig1_IL1RAPL-1_like Fir 98.8 7.4E-08 1.6E-12 59.8 8.4 68 122-190 10-94 (104)
263 cd07706 IgV_TCR_delta Immunogl 98.8 3.9E-08 8.4E-13 64.1 7.4 85 5-97 2-94 (116)
264 cd04984 IgV_L_lambda Immunoglo 98.8 3.3E-08 7.2E-13 62.3 6.7 80 13-97 2-85 (98)
265 cd05712 Ig_Siglec_N Immunoglob 98.7 8.6E-08 1.9E-12 62.7 7.7 88 7-97 4-102 (119)
266 PF13927 Ig_3: Immunoglobulin 98.7 1.7E-08 3.6E-13 60.2 3.6 61 126-187 14-75 (75)
267 cd05711 Ig_FcalphaRI Immunoglo 98.7 2.4E-07 5.1E-12 57.7 7.9 72 114-187 2-76 (94)
268 cd05883 Ig2_Necl-2 Second immu 98.6 5.6E-07 1.2E-11 53.8 8.7 79 19-111 1-80 (82)
269 cd05881 Ig1_Necl-2 First (N-te 98.6 5.6E-07 1.2E-11 55.7 8.3 68 120-188 5-84 (95)
270 cd04981 IgV_H Immunoglobulin ( 98.6 5.4E-07 1.2E-11 58.6 8.4 86 8-96 3-97 (117)
271 cd05716 Ig_pIgR Immunoglobulin 98.6 1.1E-07 2.3E-12 60.0 4.9 80 12-98 2-87 (98)
272 cd05900 Ig_Aggrecan Immunoglob 98.6 9.3E-07 2E-11 56.7 9.0 75 126-202 1-109 (112)
273 cd05761 Ig2_Necl-1-4_like Seco 98.6 5.5E-07 1.2E-11 54.6 7.6 60 130-190 2-69 (82)
274 cd05755 Ig2_ICAM-1_like Second 98.6 9.2E-07 2E-11 55.1 8.2 81 4-99 3-86 (100)
275 cd07700 IgV_CD8_beta Immunoglo 98.5 3E-07 6.5E-12 58.9 6.3 83 13-96 2-93 (107)
276 cd05775 Ig_SLAM-CD84_like_N N- 98.5 3E-07 6.5E-12 57.7 6.1 76 125-201 2-96 (97)
277 cd04983 IgV_TCR_alpha_like Imm 98.5 1E-06 2.2E-11 56.7 8.7 70 119-189 5-93 (109)
278 cd05714 Ig_CSPGs_LP Immunoglob 98.5 1.2E-06 2.6E-11 56.0 8.2 76 126-203 1-104 (106)
279 cd00099 IgV Immunoglobulin var 98.5 6.4E-07 1.4E-11 57.2 6.9 66 123-189 2-90 (105)
280 cd07694 Ig2_CD4 Second immunog 98.5 1.7E-06 3.7E-11 51.7 8.0 76 11-111 8-86 (88)
281 cd07705 Ig2_Necl-1 Second immu 98.5 3.2E-06 7E-11 51.2 9.1 60 130-190 2-70 (83)
282 cd05713 Ig_MOG_like Immunoglob 98.5 1.7E-06 3.8E-11 54.7 8.1 73 127-201 1-99 (100)
283 cd05877 Ig_LP_like Immunoglobu 98.5 1.7E-06 3.7E-11 55.4 8.1 75 126-202 1-103 (106)
284 cd05879 Ig_P0 Immunoglobulin ( 98.5 2.3E-06 5E-11 55.3 8.6 71 119-190 5-104 (116)
285 cd00098 IgC Immunoglobulin Con 98.5 1.2E-06 2.7E-11 54.8 7.2 75 15-100 11-87 (95)
286 cd05884 Ig2_Necl-3 Second immu 98.4 3.5E-06 7.6E-11 51.0 8.6 60 130-190 2-70 (83)
287 cd05720 Ig_CD8_alpha Immunoglo 98.4 3.7E-07 8.1E-12 58.1 4.5 83 13-96 2-90 (104)
288 cd05715 Ig_P0-like Immunoglobu 98.4 4.9E-06 1.1E-10 54.1 9.7 71 119-190 5-104 (116)
289 cd05761 Ig2_Necl-1-4_like Seco 98.4 3.5E-06 7.7E-11 51.0 8.4 69 19-100 1-70 (82)
290 cd05718 Ig1_PVR_like First imm 98.4 2.9E-06 6.3E-11 53.4 8.2 72 128-201 1-97 (98)
291 cd07698 IgC_MHC_I_alpha3 Class 98.4 6.3E-06 1.4E-10 51.2 9.3 78 2-99 2-84 (93)
292 cd05755 Ig2_ICAM-1_like Second 98.4 2.1E-06 4.5E-11 53.5 7.0 68 123-191 12-87 (100)
293 cd07694 Ig2_CD4 Second immunog 98.4 5.9E-06 1.3E-10 49.4 8.2 64 121-188 8-73 (88)
294 cd05899 IgV_TCR_beta Immunoglo 98.4 2.8E-06 6.1E-11 54.7 7.3 68 119-188 5-94 (110)
295 cd05878 Ig_Aggrecan_like Immun 98.3 5.2E-06 1.1E-10 53.3 8.3 76 126-203 1-108 (110)
296 cd05880 Ig_EVA1 Immunoglobulin 98.3 1E-05 2.2E-10 52.4 9.5 71 119-190 5-103 (115)
297 cd00098 IgC Immunoglobulin Con 98.3 2.2E-06 4.7E-11 53.6 6.2 65 125-190 11-86 (95)
298 cd04980 IgV_L_kappa Immunoglob 98.3 5.4E-06 1.2E-10 53.0 7.9 69 119-188 7-93 (106)
299 cd05884 Ig2_Necl-3 Second immu 98.3 1E-05 2.2E-10 48.9 8.6 69 20-100 2-71 (83)
300 cd05770 IgC_beta2m Class I maj 98.3 1.7E-05 3.6E-10 49.0 9.6 79 2-99 1-84 (93)
301 cd05767 IgC_MHC_II_alpha Class 98.3 1.5E-05 3.2E-10 49.4 9.2 44 2-46 1-46 (94)
302 cd07705 Ig2_Necl-1 Second immu 98.3 1.4E-05 2.9E-10 48.5 8.9 69 20-100 2-71 (83)
303 smart00406 IGv Immunoglobulin 98.3 2.3E-06 4.9E-11 51.7 5.3 74 19-94 1-81 (81)
304 cd07699 IgC_L Immunoglobulin C 98.3 6.8E-06 1.5E-10 51.8 7.5 87 2-99 1-90 (100)
305 cd04982 IgV_TCR_gamma Immunogl 98.2 7.3E-06 1.6E-10 53.4 7.2 68 119-187 5-98 (116)
306 cd04984 IgV_L_lambda Immunoglo 98.2 1.1E-05 2.5E-10 50.7 7.8 64 123-187 2-84 (98)
307 cd05887 Ig1_Nectin-3_like Firs 98.2 2.7E-05 5.8E-10 48.4 9.1 73 128-201 1-95 (96)
308 PHA02987 Ig domain OX-2-like p 98.2 1.9E-05 4.2E-10 54.2 8.9 84 121-205 24-125 (189)
309 cd05766 IgC_MHC_II_beta Class 98.2 4.3E-05 9.4E-10 47.4 9.5 70 14-100 11-85 (94)
310 cd05769 IgC_TCR_beta T cell re 98.2 1.9E-05 4E-10 50.8 7.9 91 1-101 1-95 (115)
311 cd05772 IgC_SIRP Signal-regula 98.2 5.7E-05 1.2E-09 48.4 10.1 35 11-45 15-51 (111)
312 PF08205 C2-set_2: CD80-like C 98.2 1.7E-05 3.6E-10 48.9 7.5 85 3-100 1-86 (89)
313 cd05846 Ig1_MRC-OX-2_like Firs 98.2 2.3E-05 5.1E-10 49.1 8.3 74 127-201 1-96 (97)
314 cd00096 Ig Immunoglobulin doma 98.2 1.1E-05 2.3E-10 47.0 6.4 66 20-98 1-66 (74)
315 PF07686 V-set: Immunoglobulin 98.2 4.5E-06 9.9E-11 54.0 5.0 69 119-188 8-101 (114)
316 KOG1480|consensus 98.1 1.4E-06 3E-11 71.5 2.7 190 3-205 25-222 (909)
317 smart00407 IGc1 Immunoglobulin 98.1 3.5E-05 7.5E-10 45.8 8.1 69 19-98 1-71 (75)
318 cd05766 IgC_MHC_II_beta Class 98.1 3E-05 6.5E-10 48.2 8.1 65 125-190 12-84 (94)
319 cd05886 Ig1_Nectin-1_like Firs 98.1 6.6E-05 1.4E-09 47.0 9.3 36 164-201 62-98 (99)
320 cd07692 Ig_CD3_epsilon Immunog 98.1 6.7E-06 1.4E-10 46.1 4.1 52 15-97 5-56 (65)
321 cd05902 Ig_Neurocan Immunoglob 98.1 2.3E-05 5E-10 50.1 7.0 74 127-202 2-107 (110)
322 cd05888 Ig1_Nectin-4_like Frst 98.1 4.8E-05 1E-09 48.0 8.1 71 129-201 2-99 (100)
323 PHA03270 envelope glycoprotein 98.1 0.0031 6.7E-08 49.2 22.9 166 75-251 183-366 (466)
324 cd05901 Ig_Versican Immunoglob 98.1 3.5E-05 7.5E-10 49.5 7.3 37 164-202 78-114 (117)
325 cd07704 Ig2_Nectin-3-4_like Se 98.0 9.1E-05 2E-09 45.9 8.3 71 118-190 7-85 (97)
326 PF08205 C2-set_2: CD80-like C 98.0 1.3E-05 2.9E-10 49.4 4.8 63 127-190 14-85 (89)
327 cd05716 Ig_pIgR Immunoglobulin 98.0 4.4E-05 9.6E-10 48.0 7.1 67 122-189 2-87 (98)
328 cd05847 IgC_CH2_IgE CH2 domain 98.0 7.1E-05 1.5E-09 46.4 7.8 80 9-99 6-87 (94)
329 PHA03269 envelope glycoprotein 98.0 0.0015 3.3E-08 51.5 16.3 164 75-249 290-474 (566)
330 cd05768 IgC_CH4 CH4 domain (fo 98.0 5.7E-05 1.2E-09 47.7 7.3 38 8-45 7-46 (102)
331 cd05767 IgC_MHC_II_alpha Class 98.0 8.9E-05 1.9E-09 46.0 7.9 63 126-189 14-84 (94)
332 cd05772 IgC_SIRP Signal-regula 98.0 0.00013 2.7E-09 46.8 8.8 65 123-189 17-92 (111)
333 cd07700 IgV_CD8_beta Immunoglo 97.9 7E-05 1.5E-09 47.9 7.3 64 123-187 2-93 (107)
334 PHA02982 hypothetical protein; 97.9 0.0001 2.2E-09 51.2 8.3 136 10-151 32-172 (251)
335 smart00407 IGc1 Immunoglobulin 97.9 6E-05 1.3E-09 44.7 6.4 59 130-189 2-71 (75)
336 PF08204 V-set_CD47: CD47 immu 97.9 1.5E-05 3.2E-10 51.7 3.8 91 15-111 25-120 (130)
337 cd05770 IgC_beta2m Class I maj 97.9 0.00013 2.9E-09 45.0 7.9 63 125-189 13-83 (93)
338 cd07698 IgC_MHC_I_alpha3 Class 97.9 0.00014 2.9E-09 45.2 8.0 63 127-190 14-84 (93)
339 cd07697 IgC_TCR_gamma T cell r 97.9 0.0002 4.3E-09 44.5 8.4 39 8-46 7-47 (96)
340 cd05847 IgC_CH2_IgE CH2 domain 97.9 7.2E-05 1.6E-09 46.4 6.4 64 126-190 13-87 (94)
341 cd05721 IgV_CTLA-4 Immunoglobu 97.9 5.4E-05 1.2E-09 48.1 5.7 83 6-94 2-93 (115)
342 cd05889 Ig1_DNAM-1_like First 97.9 0.00027 5.9E-09 43.9 8.6 61 128-189 1-83 (96)
343 cd07699 IgC_L Immunoglobulin C 97.8 5.7E-05 1.2E-09 47.6 5.3 65 124-189 14-89 (100)
344 cd00096 Ig Immunoglobulin doma 97.8 6.5E-05 1.4E-09 43.5 5.3 59 130-189 1-66 (74)
345 cd07706 IgV_TCR_delta Immunogl 97.8 8.8E-05 1.9E-09 48.2 6.1 69 119-188 6-94 (116)
346 cd05768 IgC_CH4 CH4 domain (fo 97.8 9.4E-05 2E-09 46.7 6.0 65 124-189 13-91 (102)
347 cd05719 Ig2_PVR_like Second im 97.8 0.00033 7.1E-09 43.6 7.9 61 128-190 16-83 (95)
348 PHA03273 envelope glycoprotein 97.8 0.0036 7.8E-08 49.3 15.0 158 75-243 199-376 (486)
349 cd07696 IgC_CH3 CH3 domain (th 97.7 0.00024 5.2E-09 44.3 7.0 34 8-41 5-41 (96)
350 cd07691 Ig_CD3_gamma_delta Imm 97.7 0.00019 4E-09 40.7 5.8 49 127-187 6-54 (69)
351 cd07703 Ig2_Nectin-2_like Seco 97.7 0.00028 6.1E-09 43.8 7.1 61 128-190 16-83 (95)
352 PF07654 C1-set: Immunoglobuli 97.7 0.00026 5.7E-09 42.9 6.8 69 15-100 6-79 (83)
353 cd07696 IgC_CH3 CH3 domain (th 97.7 0.00024 5.1E-09 44.3 6.6 68 122-189 9-86 (96)
354 PHA02633 hypothetical protein; 97.7 0.00016 3.6E-09 39.8 4.9 39 73-113 17-55 (63)
355 cd05712 Ig_Siglec_N Immunoglob 97.7 0.00042 9.1E-09 45.3 7.7 69 119-188 6-102 (119)
356 cd07691 Ig_CD3_gamma_delta Imm 97.6 0.00021 4.5E-09 40.5 5.0 50 16-96 5-54 (69)
357 PF07654 C1-set: Immunoglobuli 97.6 0.00061 1.3E-08 41.3 7.6 64 126-190 7-78 (83)
358 cd05720 Ig_CD8_alpha Immunoglo 97.6 0.0003 6.6E-09 44.7 6.1 64 123-187 2-90 (104)
359 cd04985 IgC_CH1 CH1 domain (fi 97.6 0.00095 2.1E-08 41.5 8.1 27 16-42 15-43 (95)
360 cd07697 IgC_TCR_gamma T cell r 97.6 0.0014 3E-08 40.8 8.7 67 123-189 12-85 (96)
361 cd05769 IgC_TCR_beta T cell re 97.6 0.00032 7E-09 45.2 6.0 66 124-190 15-93 (115)
362 cd07692 Ig_CD3_epsilon Immunog 97.5 0.00052 1.1E-08 38.6 5.7 52 124-187 4-55 (65)
363 cd04981 IgV_H Immunoglobulin ( 97.5 0.00054 1.2E-08 44.6 6.4 68 119-187 4-97 (117)
364 PHA03271 envelope glycoprotein 97.4 0.038 8.3E-07 43.2 17.0 163 75-248 208-389 (490)
365 cd04985 IgC_CH1 CH1 domain (fi 97.4 0.0012 2.7E-08 41.0 6.6 62 126-189 15-87 (95)
366 cd05719 Ig2_PVR_like Second im 97.4 0.0025 5.5E-08 39.6 7.9 79 7-100 5-84 (95)
367 cd04986 IgC_CH2 CH2 domain (se 97.3 0.0011 2.4E-08 41.3 5.9 41 2-42 3-47 (99)
368 cd04986 IgC_CH2 CH2 domain (se 97.3 0.001 2.2E-08 41.5 5.7 66 124-190 16-90 (99)
369 smart00406 IGv Immunoglobulin 97.2 0.00086 1.9E-08 40.2 4.9 56 129-185 1-81 (81)
370 cd07703 Ig2_Nectin-2_like Seco 97.2 0.0034 7.3E-08 39.0 7.2 78 9-101 7-85 (95)
371 cd07689 Ig2_VCAM-1 Second immu 96.9 0.0065 1.4E-07 37.6 6.4 66 124-190 12-87 (99)
372 cd07689 Ig2_VCAM-1 Second immu 96.9 0.0081 1.8E-07 37.1 6.6 33 13-45 11-46 (99)
373 PF11465 Receptor_2B4: Natural 96.7 0.0059 1.3E-07 38.0 5.1 40 71-111 68-107 (108)
374 PHA02914 Immunoglobulin-like d 96.7 0.025 5.5E-07 43.8 9.4 139 9-153 271-421 (500)
375 PHA03270 envelope glycoprotein 96.7 0.027 5.8E-07 44.2 9.3 81 165-248 182-265 (466)
376 cd07704 Ig2_Nectin-3-4_like Se 96.6 0.02 4.2E-07 35.6 7.0 75 10-99 9-85 (97)
377 PF07354 Sp38: Zona-pellucida- 96.6 0.0058 1.3E-07 44.6 5.2 49 140-189 11-60 (271)
378 PHA03269 envelope glycoprotein 96.6 0.022 4.9E-07 45.3 8.6 80 166-248 290-373 (566)
379 PHA03273 envelope glycoprotein 96.5 0.034 7.4E-07 44.1 9.3 80 166-248 199-281 (486)
380 PHA02914 Immunoglobulin-like d 96.5 0.31 6.7E-06 38.2 18.3 118 124-249 276-424 (500)
381 KOG1480|consensus 96.4 0.0017 3.8E-08 54.2 1.8 85 7-111 134-219 (909)
382 cd05721 IgV_CTLA-4 Immunoglobu 96.4 0.028 6.1E-07 35.9 6.7 66 120-186 6-94 (115)
383 PHA02633 hypothetical protein; 96.3 0.015 3.3E-07 32.3 4.6 41 163-205 16-56 (63)
384 PHA02982 hypothetical protein; 96.3 0.065 1.4E-06 37.8 8.6 119 121-246 33-174 (251)
385 PHA03042 CD47-like protein; Pr 96.2 0.033 7.1E-07 41.0 7.3 71 126-202 30-105 (286)
386 PF07354 Sp38: Zona-pellucida- 96.2 0.01 2.2E-07 43.4 4.6 49 30-98 11-60 (271)
387 PF08204 V-set_CD47: CD47 immu 96.1 0.017 3.7E-07 37.8 4.9 74 126-202 26-120 (130)
388 PHA03271 envelope glycoprotein 96.1 0.064 1.4E-06 42.0 8.6 83 165-250 207-293 (490)
389 KOG4597|consensus 96.1 0.0092 2E-07 47.2 4.2 91 5-111 199-292 (560)
390 PHA03042 CD47-like protein; Pr 96.1 0.036 7.8E-07 40.8 6.8 71 16-111 30-105 (286)
391 TIGR00864 PCC polycystin catio 95.3 3.5 7.5E-05 41.2 21.9 191 8-242 1703-1904(2740)
392 PHA02865 MHC-like TNF binding 95.2 0.23 5E-06 38.3 8.7 21 19-39 216-238 (338)
393 KOG0613|consensus 95.2 0.17 3.7E-06 45.5 8.9 167 75-245 279-479 (1205)
394 cd05890 Ig2_Nectin-1_like Seco 94.7 0.32 6.9E-06 29.8 6.6 69 129-200 22-97 (98)
395 PF05790 C2-set: Immunoglobuli 94.2 0.68 1.5E-05 27.7 7.8 21 75-96 44-64 (80)
396 KOG4597|consensus 94.1 0.19 4E-06 40.3 5.9 79 121-201 205-291 (560)
397 PHA03052 Hypothetical protein; 93.8 0.24 5.1E-06 28.0 4.4 38 212-249 5-44 (69)
398 PHA02865 MHC-like TNF binding 93.3 0.33 7.1E-06 37.5 6.0 21 129-149 216-238 (338)
399 PF02124 Marek_A: Marek's dise 93.0 2.5 5.3E-05 30.5 15.6 141 32-189 7-161 (211)
400 PF03921 ICAM_N: Intercellular 92.7 1.5 3.2E-05 27.0 8.7 82 5-114 6-89 (91)
401 PF11465 Receptor_2B4: Natural 92.3 0.38 8.2E-06 30.2 4.2 39 162-201 68-106 (108)
402 PHA03052 Hypothetical protein; 91.9 0.63 1.4E-05 26.4 4.4 35 9-43 4-41 (69)
403 PF06328 Lep_receptor_Ig: Ig-l 90.9 1.9 4E-05 26.4 6.3 39 8-46 9-52 (89)
404 PF05790 C2-set: Immunoglobuli 90.9 2.2 4.9E-05 25.5 7.2 52 141-200 26-77 (80)
405 PF06832 BiPBP_C: Penicillin-B 90.8 2.5 5.4E-05 25.8 8.6 72 2-102 10-85 (89)
406 PF06328 Lep_receptor_Ig: Ig-l 90.6 1.8 3.9E-05 26.5 6.0 53 119-172 10-69 (89)
407 TIGR00864 PCC polycystin catio 90.3 23 0.0005 36.1 21.9 202 10-247 1875-2086(2740)
408 PHA03112 IL-18 binding protein 87.3 5.2 0.00011 26.7 6.7 28 13-40 34-63 (141)
409 PHA03240 envelope glycoprotein 87.1 1.7 3.7E-05 31.0 4.6 29 10-38 31-59 (258)
410 PHA03189 UL14 tegument protein 86.4 7.1 0.00015 29.8 7.7 22 8-29 58-79 (348)
411 KOG0613|consensus 86.4 2.2 4.7E-05 38.9 5.9 163 6-184 338-511 (1205)
412 PF11049 KSHV_K1: Glycoprotein 82.7 4.4 9.5E-05 22.9 4.0 58 21-114 2-59 (71)
413 KOG1026|consensus 77.4 7.7 0.00017 34.0 5.8 147 11-191 201-353 (774)
414 PF03921 ICAM_N: Intercellular 76.2 16 0.00034 22.6 7.3 79 119-206 10-90 (91)
415 cd05890 Ig2_Nectin-1_like Seco 68.7 13 0.00028 23.1 3.8 21 221-241 22-42 (98)
416 PHA03189 UL14 tegument protein 68.6 51 0.0011 25.5 7.6 18 171-189 139-156 (348)
417 PF02124 Marek_A: Marek's dise 64.4 53 0.0012 24.0 10.0 96 142-246 7-117 (211)
418 PHA03282 envelope glycoprotein 58.4 30 0.00065 28.4 5.1 40 71-111 121-161 (540)
419 PHA03112 IL-18 binding protein 53.7 67 0.0014 21.7 6.0 27 217-243 36-63 (141)
420 PHA03283 envelope glycoprotein 52.5 1.4E+02 0.0031 25.2 8.4 37 74-112 134-170 (542)
421 PHA03286 envelope glycoprotein 49.9 1.5E+02 0.0032 24.6 9.1 37 74-111 127-163 (492)
422 PHA03283 envelope glycoprotein 46.7 1.8E+02 0.0039 24.6 8.6 76 164-241 133-233 (542)
423 KOG1026|consensus 44.9 71 0.0015 28.5 5.7 110 122-246 202-313 (774)
424 PF09085 Adhes-Ig_like: Adhesi 44.7 38 0.00082 21.0 3.0 36 215-250 12-51 (110)
425 PHA03286 envelope glycoprotein 44.2 1.9E+02 0.004 24.1 8.8 78 164-242 126-226 (492)
426 PF00801 PKD: PKD domain; Int 40.6 47 0.001 18.8 3.0 29 214-243 6-34 (69)
427 KOG0200|consensus 40.4 2.5E+02 0.0055 24.6 10.4 23 73-96 12-34 (609)
428 PF01688 Herpes_gI: Alphaherpe 39.1 90 0.002 21.7 4.5 22 76-98 126-147 (161)
429 PF02480 Herpes_gE: Alphaherpe 38.4 10 0.00023 31.1 0.0 39 73-112 88-126 (439)
430 KOG3611|consensus 37.8 98 0.0021 27.7 5.5 40 72-112 610-649 (737)
431 PF05566 Pox_vIL-18BP: Orthopo 36.3 1.2E+02 0.0025 19.4 5.6 31 75-107 94-124 (126)
432 PHA02935 Hypothetical protein; 35.4 77 0.0017 22.7 3.8 60 76-137 104-165 (349)
433 PF08043 Xin: Xin repeat; Int 34.1 38 0.00082 13.3 1.2 12 236-247 5-16 (16)
434 PHA03282 envelope glycoprotein 33.8 1.7E+02 0.0037 24.4 5.9 26 163-189 122-147 (540)
435 PHA03281 envelope glycoprotein 33.1 3.2E+02 0.0068 23.5 8.6 75 73-148 297-394 (642)
436 PF02440 Adeno_E3_CR1: Adenovi 31.8 67 0.0015 18.2 2.5 20 216-240 2-21 (63)
437 PF02010 REJ: REJ domain; Int 31.2 1.1E+02 0.0024 25.1 4.9 168 73-241 37-233 (440)
438 KOG3611|consensus 30.4 1.7E+02 0.0038 26.2 5.9 72 129-202 571-648 (737)
439 PF15096 G6B: G6B family 26.1 73 0.0016 22.6 2.4 16 13-28 7-22 (224)
440 PHA03281 envelope glycoprotein 26.0 4.3E+02 0.0093 22.8 9.0 77 164-241 297-394 (642)
441 PHA03290 envelope glycoprotein 23.7 2.2E+02 0.0048 22.5 4.7 24 75-99 130-153 (357)
442 PF13220 DUF4028: Protein of u 22.9 1E+02 0.0022 16.6 2.0 19 83-101 6-24 (65)
443 PF05404 TRAP-delta: Transloco 21.8 3E+02 0.0064 19.4 5.1 24 20-44 47-70 (167)
444 PRK14081 triple tyrosine motif 21.4 5.9E+02 0.013 22.8 20.3 194 12-239 396-611 (667)
445 PHA03289 envelope glycoprotein 21.3 2.5E+02 0.0055 22.1 4.6 24 75-99 123-146 (352)
446 PHA03292 envelope glycoprotein 20.3 2.5E+02 0.0054 22.7 4.5 24 75-99 129-152 (413)
No 1
>KOG3513|consensus
Probab=100.00 E-value=4.8e-34 Score=235.18 Aligned_cols=229 Identities=30% Similarity=0.540 Sum_probs=198.2
Q ss_pred CCCcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEee
Q psy14532 1 SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIEN 80 (258)
Q Consensus 1 ~~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~ 80 (258)
.+|.++..+.+..+-.|+++.|.|.+.|.|.+.+.|+++|.++.....+.++.+ .++.|.|.+
T Consensus 330 a~P~w~~~~~d~~~~~gs~v~~eC~a~g~P~p~v~WlkNg~pl~~~~r~~~~~i-----------------~~g~L~is~ 392 (1051)
T KOG3513|consen 330 APPYWLQKPQDTEADTGSNVTLECKASGKPNPTVKWLKNGEPLEPAERDPRYKI-----------------DDGTLIISN 392 (1051)
T ss_pred cCchhhcccceeEecCCCCeEEEEEecCCCCCceEEeeCCeecCccCCCcceEE-----------------eCCEEEEEe
Confidence 378888999999999999999999999999999999999999986644344444 378999999
Q ss_pred cccCCCceEEEEEEEeCCcceeeceEEEEEecC-Ceecc---CCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCC
Q psy14532 81 VQKDHDRGVYWCTATNKQGRSSSQNVHISVTGA-PFVRP---MGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLN 156 (258)
Q Consensus 81 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~-~~~~~---~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~ 156 (258)
+ ...|+|.|.|.+.|..|... ..+.|.|.+. |.+.. .....+..|.++.|.|...+.|.+.+.|.++++.+..+
T Consensus 393 v-~~~dsg~YQC~A~Nk~G~i~-anA~L~V~a~~P~f~~~p~~~~~~a~~g~~v~i~C~~~asP~p~~~W~k~~~~~~~~ 470 (1051)
T KOG3513|consen 393 V-QESDSGVYQCIAENKYGTIY-ANAELKVLASAPVFPLNPVERKVMAVVGGTVTIDCKPFASPKPKVSWLKGGEKLLQS 470 (1051)
T ss_pred c-ccccCeEEEeeeecccceEe-eeeEEEEEccCCCCCCCccceEEEEEeCCeEEEeeccCCCCcceEEEEcCCcccccC
Confidence 9 99999999999999999988 8899999876 43333 22346778999999999999999999999988877788
Q ss_pred cceEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEeecCCccccCCCCCccCCCCeeeEEEEec-cCCCCc
Q psy14532 157 RRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVT-KGDPPL 235 (258)
Q Consensus 157 ~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~-~~~p~~ 235 (258)
.++.+..+++|.|.++++ +|+|.|+|.|+|..| .......|.|..++.+...|....+..|+.++|+|.+. +-....
T Consensus 471 ~r~~i~edGtL~I~n~t~-~DaG~YtC~A~N~~G-~a~~~~~L~Vkd~tri~~~P~~~~v~~g~~v~l~Ce~shD~~ld~ 548 (1051)
T KOG3513|consen 471 GRIRILEDGTLEISNVTR-SDAGKYTCVAENKLG-KAESTGNLIVKDATRITLAPSNTDVKVGESVTLTCEASHDPSLDI 548 (1051)
T ss_pred ceEEECCCCcEEecccCc-ccCcEEEEEEEcccC-ccceEEEEEEecCceEEeccchhhhccCceEEEEeecccCCCcce
Confidence 899999999999999998 999999999999999 45677889999999998888888899999999999995 223457
Q ss_pred eeEEEECCEeccccc
Q psy14532 236 TISWLKNGLPILSAM 250 (258)
Q Consensus 236 ~~~W~~~g~~l~~~~ 250 (258)
.|.|.+||..++...
T Consensus 549 ~f~W~~nG~~id~~~ 563 (1051)
T KOG3513|consen 549 TFTWKKNGRPIDFNP 563 (1051)
T ss_pred EEEEEECCEEhhccC
Confidence 899999999886543
No 2
>KOG3513|consensus
Probab=99.98 E-value=1.4e-30 Score=214.95 Aligned_cols=224 Identities=30% Similarity=0.485 Sum_probs=181.3
Q ss_pred CCcce-eeceeeeecCCCceEEEEEEeecCCCeEEEeeCCE-eCcCCccccceecccceeeccccccceeeeeCCcEEEe
Q psy14532 2 HPQLI-YKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGY-PLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIE 79 (258)
Q Consensus 2 ~p~~~-~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~ 79 (258)
+|.|. ..+.+..+..|+.|.|.|.+.|.|.|++.|.|.+. ++... .. ......+|.|.
T Consensus 240 ~P~i~~~~p~~~~a~~G~~v~LECfA~G~P~P~i~W~k~~g~~~~~r-----~~---------------~~~~~~vL~I~ 299 (1051)
T KOG3513|consen 240 APKILVPFPETETALKGQSVKLECFALGNPTPQIKWRKVDGKPPPRR-----AT---------------YSNYGKVLKIP 299 (1051)
T ss_pred CCccccCCCCcccccCCCeEEEEEEecCCCCCcEEEEeCCCCCCCcc-----ee---------------eeccccEEEec
Confidence 56663 34457788999999999999999999999999765 33322 11 11235689999
Q ss_pred ecccCCCceEEEEEEEeCCcceeeceEEEEEecCCeec-cCCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcc
Q psy14532 80 NVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVR-PMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRR 158 (258)
Q Consensus 80 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~-~~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~ 158 (258)
++ +.+|.|.|.|.+.|..|... ..+.|.|..+|... ...+..+..|+.+.+.|.+.|.|.|.++|.+|+.++....+
T Consensus 300 nv-~~~D~G~Y~C~AeN~~G~~~-~~~~v~v~a~P~w~~~~~d~~~~~gs~v~~eC~a~g~P~p~v~WlkNg~pl~~~~r 377 (1051)
T KOG3513|consen 300 NV-QYEDAGEYECIAENSRGSAT-HSGHVTVYAPPYWLQKPQDTEADTGSNVTLECKASGKPNPTVKWLKNGEPLEPAER 377 (1051)
T ss_pred cc-CcCCCeEEEEEEecccccce-eeEEEEEecCchhhcccceeEecCCCCeEEEEEecCCCCCceEEeeCCeecCccCC
Confidence 99 99999999999999999776 88999999887544 46677888999999999999999999999999999875554
Q ss_pred ---eEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEeecC-CccccCCCCC--ccCCCCeeeEEEEeccCC
Q psy14532 159 ---QKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVP-PKIAPFEFQP--DLHSGDRAGVQCLVTKGD 232 (258)
Q Consensus 159 ---~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~-p~~~~~~~~~--~~~~g~~~~l~C~~~~~~ 232 (258)
.. ..++.|.|.++.. .|+|.|.|.|+|..| .....+.|.|... |.+...+... .+..|..+.|.|.. .+.
T Consensus 378 ~~~~~-i~~g~L~is~v~~-~dsg~YQC~A~Nk~G-~i~anA~L~V~a~~P~f~~~p~~~~~~a~~g~~v~i~C~~-~as 453 (1051)
T KOG3513|consen 378 DPRYK-IDDGTLIISNVQE-SDSGVYQCIAENKYG-TIYANAELKVLASAPVFPLNPVERKVMAVVGGTVTIDCKP-FAS 453 (1051)
T ss_pred CcceE-EeCCEEEEEeccc-ccCeEEEeeeecccc-eEeeeeEEEEEccCCCCCCCccceEEEEEeCCeEEEeecc-CCC
Confidence 43 3678999999997 999999999999998 4556777888765 6666555443 67789999999999 799
Q ss_pred CCceeEEEECCEecccccc
Q psy14532 233 PPLTISWLKNGLPILSAMG 251 (258)
Q Consensus 233 p~~~~~W~~~g~~l~~~~~ 251 (258)
|.+.+.|.++++.+..+.+
T Consensus 454 P~p~~~W~k~~~~~~~~~r 472 (1051)
T KOG3513|consen 454 PKPKVSWLKGGEKLLQSGR 472 (1051)
T ss_pred CcceEEEEcCCcccccCce
Confidence 9999999998885544443
No 3
>KOG4221|consensus
Probab=99.97 E-value=9.7e-30 Score=209.91 Aligned_cols=232 Identities=27% Similarity=0.488 Sum_probs=194.0
Q ss_pred CCcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeec
Q psy14532 2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENV 81 (258)
Q Consensus 2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~ 81 (258)
.+.|...+.+..+..|+++.|.|.+.+.+.+.+.|.++..++... . +.....++.|.|..+
T Consensus 140 ~~~f~~~~~~~t~~~g~ta~f~c~vn~e~~p~i~w~kn~~pl~~~---~----------------r~i~lpsG~L~I~~~ 200 (1381)
T KOG4221|consen 140 LADFALQPESTTLLYGQTALFSCEVNAEPVPTIMWLKNDQPLPLD---S----------------RVIVLPSGALEISGL 200 (1381)
T ss_pred cCccccCccceeEecCCcEEEEEEEcCccCceeEEecccccccCC---C----------------cEEEcCCCcEEeccc
Confidence 356677788899999999999999999888899999998877655 1 233456899999999
Q ss_pred ccCCCceEEEEEEEeCCcceeeceEEEEEecCC-------eeccCCCcceecCCcEEEEeeeCcccCceEEEEeCCcccC
Q psy14532 82 QKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP-------FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLP 154 (258)
Q Consensus 82 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~-------~~~~~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~ 154 (258)
+..|.|.|+|.+.+......+..+.|+|...+ ++..+....+..|+.+.|.|.+.+.|.|.|.|.+|+..+.
T Consensus 201 -qp~d~g~yrc~vt~g~~~r~S~~a~ltv~s~~~~~~~~~fl~~p~~~~v~~g~~v~leCvvs~~p~p~v~Wlrng~~i~ 279 (1381)
T KOG4221|consen 201 -QPSDTGEYRCVVTGGASQRTSNEAELTVLSDPGALNKLVFLDEPSNAVVVEGDDVVLECVVSGVPKPSVKWLRNGEKIS 279 (1381)
T ss_pred -ccCCCceEEEEEecCCcCCccceeEEEecCCcccccceeeecCCCccccccCCcEEEEEEecCCCCCceEEeeCCeeee
Confidence 99999999999999876655677888887433 2334566788899999999999999999999999999887
Q ss_pred CCc-ceEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEeecCCccccCCCCCccCCCCeeeEEEEeccCCC
Q psy14532 155 LNR-RQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDP 233 (258)
Q Consensus 155 ~~~-~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p 233 (258)
... ++.....+.|.|.+++. +|+|.|+|.|.|... .......|.|..+|.+...+......++.++.|.|.+ .+.|
T Consensus 280 ~ds~rivl~g~~slliS~a~~-~dSg~YtC~Atn~~D-~idasaev~V~a~P~~~~~p~~l~A~e~~die~ec~~-~g~p 356 (1381)
T KOG4221|consen 280 VDSYRIVLVGGSSLLISNATD-DDSGKYTCRATNTND-SIDASAEVTVLAPPGFTKAPTTLVAHESMDIEFECPV-SGKP 356 (1381)
T ss_pred ecceEEEEecccceEEecccc-ccCceEEEEecCCCc-ccccceEEEEEcCCCCCCCCcceeeeeccceeEeCCC-CCCC
Confidence 654 33444567899999996 999999999999654 3456778899999999999988899999999999999 5779
Q ss_pred CceeEEEECCEeccccccceecC
Q psy14532 234 PLTISWLKNGLPILSAMGVGRKG 256 (258)
Q Consensus 234 ~~~~~W~~~g~~l~~~~~~~~~~ 256 (258)
.+.+.|+++|..+..++++...+
T Consensus 357 ~p~v~w~kNgd~~ipsdy~ki~~ 379 (1381)
T KOG4221|consen 357 IPTVRWYKNGDRIIPSDYFKIVG 379 (1381)
T ss_pred cceEEEEecCcccCcccceEecC
Confidence 99999999999999888877654
No 4
>KOG4194|consensus
Probab=99.97 E-value=2.9e-29 Score=194.63 Aligned_cols=239 Identities=26% Similarity=0.403 Sum_probs=185.2
Q ss_pred CCcceeeceeeeecCCCceEEEEEEeec--CCCeEEEeeCCEeCcCCc-ccc-ceecccceeeccccccceeeeeCCcEE
Q psy14532 2 HPQLIYKFIQQTLQPGPPVSLKCIATGN--PTPHISWKLDGYPLAGDR-HEN-KNRIGEARVQQLPLNRRQKVFPNGTLL 77 (258)
Q Consensus 2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~--~~~~v~W~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~ 77 (258)
+|+|..+|.++.+..|+.++|+|.+.+. ....+.|.++.+...... ++. .+... .+ ..- ..+.....+-|+
T Consensus 503 kpqI~~qPe~~~al~g~nirftC~a~sssasplsi~WR~dnevq~rv~ved~a~~~~q-~r--~~~--~~e~~~~~~~L~ 577 (873)
T KOG4194|consen 503 KPQIVTQPETVSALIGENIRFTCNAYSSSASPLSIEWRKDNEVQPRVDVEDFATFLSQ-NR--NGT--FGEREEYTAILH 577 (873)
T ss_pred CcceecCchHhhhhhccceEEEEEeccCCCCCceeEeeeccccCcccchhcchhhhhh-hc--cCc--cchhhhhhheee
Confidence 5889999999999999999999998763 344899999866332210 000 00000 00 000 011112245689
Q ss_pred EeecccCCCceEEEEEEEeCCcceeeceEEEEEecCCeec-cCCCcceecCCcEEEEeeeCcccCceEEEEeCCcc-cCC
Q psy14532 78 IENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVR-PMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQ-LPL 155 (258)
Q Consensus 78 i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~-~~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~-~~~ 155 (258)
+.|+ ...|+|.|.|+++|..|...+..+.|+|...|.+. .+.+..+..|+.+.|.|.+.|.|.|.|.|-++|.. ++.
T Consensus 578 L~nV-t~td~grYQCVvtN~FGStysqk~KltV~~~PsFtktP~dltl~tg~mArl~CaAtG~P~PeIawqkdggtdFPA 656 (873)
T KOG4194|consen 578 LDNV-TFTDEGRYQCVVTNHFGSTYSQKAKLTVNQAPSFTKTPEDLTLRTGQMARLECAATGHPRPEIAWQKDGGTDFPA 656 (873)
T ss_pred eeee-ecccCceEEEEEecccCcchhheeEEEeeccCccccCcccceeecccceeeeeeccCCCCcceeehhcCCCCCch
Confidence 9999 99999999999999999998899999998777544 57788899999999999999999999999998765 543
Q ss_pred Cc--c-eEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEeecCCccccCCCCCccCCCCeeeEEEEeccCC
Q psy14532 156 NR--R-QKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGD 232 (258)
Q Consensus 156 ~~--~-~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~ 232 (258)
.. + +.+..+..+.|.+++. +|.|.|+|.|.|..| ..+....|.|...|.+..+.....+..|+++.|.|.+ .+.
T Consensus 657 A~eRRl~Vmpedd~f~Itnvk~-eD~GiYtC~A~n~AG-~isanAtL~V~e~p~f~~PL~~~~V~~get~vlqC~a-~~~ 733 (873)
T KOG4194|consen 657 ARERRLHVMPEDDVFFITNVKI-EDQGIYTCTAQNVAG-QISANATLTVLETPSFSIPLEDQLVVVGETLVLQCLA-EGA 733 (873)
T ss_pred hhhheeeecCCCCEEEEecccc-cccceeEEeeecccc-ceeeceEEEEecCCcccccccceEEEecceEEEEEec-CCC
Confidence 32 2 3345667899999998 999999999999998 5678888999999988877778889999999999999 565
Q ss_pred CC-ceeEEEECCEecccc
Q psy14532 233 PP-LTISWLKNGLPILSA 249 (258)
Q Consensus 233 p~-~~~~W~~~g~~l~~~ 249 (258)
|+ |...|+|++++|.-.
T Consensus 734 ~a~pr~~W~k~d~pil~t 751 (873)
T KOG4194|consen 734 PADPRLEWFKEDKPILIT 751 (873)
T ss_pred CCCccccccCCCCceEEe
Confidence 55 999999988887543
No 5
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.96 E-value=1.5e-26 Score=176.61 Aligned_cols=210 Identities=23% Similarity=0.355 Sum_probs=146.9
Q ss_pred eeeecCCCceEEEEEE-----eecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCC-cEEEeecccC
Q psy14532 11 QQTLQPGPPVSLKCIA-----TGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNG-TLLIENVQKD 84 (258)
Q Consensus 11 ~~~~~~g~~v~l~C~~-----~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~i~~~~~~ 84 (258)
...+.+|+.+.|.|.+ .+.|.+.+.|+|++..... .. ...++ .|.|.++ ..
T Consensus 35 ~~~~~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~~~~-----~~-----------------~~~~g~~l~i~~~-~~ 91 (326)
T PHA02785 35 SFMELENEPVILPCPQINTLSSGYNILDILWEKRGADNDR-----II-----------------PIDNGSNMLILNP-TQ 91 (326)
T ss_pred hhhhhcCCCEEEECCCccccccCCCCceEEEEECCCccce-----EE-----------------EccCCceEEEccc-Cc
Confidence 4457789999999996 5778889999998742110 00 01123 4789999 89
Q ss_pred CCceEEEEEEEeCCcceeeceEEEEEecCC--ee-ccCCCcceecCCcEEEEeee-----CcccCceEEEEeCCcccCCC
Q psy14532 85 HDRGVYWCTATNKQGRSSSQNVHISVTGAP--FV-RPMGNVSAIAGEPLYLGCPV-----AGYPIESITWQKGVQQLPLN 156 (258)
Q Consensus 85 ~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~--~~-~~~~~~~~~~g~~~~l~C~~-----~~~~~~~i~W~~~~~~~~~~ 156 (258)
+|+|.|+|.+.|..+... ..+.|+|.... .+ .......+.+|..+.|.|.. .+.+.+.+.|+++.. + ..
T Consensus 92 ~DsG~Y~C~a~N~~g~~~-~s~~L~V~~~~~~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~~-~-~~ 168 (326)
T PHA02785 92 SDSGIYICITKNETYCDM-MSLNLTIVSVSESNIDLISYPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHRR-L-RN 168 (326)
T ss_pred ccCeEEEEEEECCCcceE-EEEEEEEEecCCCccceeeccceecccCcEEEECCChhhcccCCCCceEEEccCCc-c-CC
Confidence 999999999999887665 66777775432 11 11233456788999999972 356788999987543 2 22
Q ss_pred cceEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCc---cceEEEEeec---CCccccCCCCCccCCCCeeeEEEEecc
Q psy14532 157 RRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSS---SQNVHISVTV---PPKIAPFEFQPDLHSGDRAGVQCLVTK 230 (258)
Q Consensus 157 ~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~---~~~~~l~v~~---~p~~~~~~~~~~~~~g~~~~l~C~~~~ 230 (258)
.+.....++.|.|.+++. +|.|.|+|.+.+..+... ...+.|.|.. +|.+ ..+....+..|+.++|.|.+.
T Consensus 169 ~r~~~~~~~~L~i~~v~~-~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~~~~pp~~-~~p~~~~~~~G~~v~L~C~a~- 245 (326)
T PHA02785 169 KRLKQRTPGIITIEDVRK-NDAGYYTCVLKYIYGDKTYNVTRIVKLEVRDRIIPPTM-QLPEGVVTSIGSNLTIACRVS- 245 (326)
T ss_pred cceEecCCCeEEEeecCh-hhCeEEEEEEEeccCCEEEeEEEEEEEEEeccCCCcee-cCCCcEEecCCCcEEEEEEEE-
Confidence 344444567899999997 999999999999876322 2234455542 2222 234455677899999999995
Q ss_pred CCCC---ceeEEEECCEecccc
Q psy14532 231 GDPP---LTISWLKNGLPILSA 249 (258)
Q Consensus 231 ~~p~---~~~~W~~~g~~l~~~ 249 (258)
+.|. +.+.|++||+.|+..
T Consensus 246 g~P~~~~~~v~W~kng~~i~~~ 267 (326)
T PHA02785 246 LRPPTTDADVFWISNGMYYEED 267 (326)
T ss_pred CCCCCCCceEEEEECCEECCCc
Confidence 5554 589999999998653
No 6
>KOG4222|consensus
Probab=99.95 E-value=9.6e-27 Score=191.41 Aligned_cols=233 Identities=30% Similarity=0.481 Sum_probs=190.8
Q ss_pred CCcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCC-ccccceecccceeeccccccceeeeeCCcEEEee
Q psy14532 2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGD-RHENKNRIGEARVQQLPLNRRQKVFPNGTLLIEN 80 (258)
Q Consensus 2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~ 80 (258)
+|+|+.++.++.+..|+.++|.|.++|.|.+.++|||+|+.+... ....+ .+..+++|.+.+
T Consensus 31 ~p~iiehp~d~vvs~~~patlnc~asG~ppPti~w~k~G~~~~~~e~~shR-----------------~~lp~gsLf~l~ 93 (1281)
T KOG4222|consen 31 PPRIIEHPHDLVVSKGEPATLNCKASGDPPPTIEWYKDGENVFKGEPGSHR-----------------FLLPDGSLFLLR 93 (1281)
T ss_pred CCceEecchhhhccCCCCceeecCCCCCCCCceecccCCcccCCCCCCCcc-----------------eecCCccEEEEe
Confidence 789999999999999999999999999999999999999644333 21222 233467776655
Q ss_pred cc----cCCCceEEEEEEEeCCcceeeceEEEEEecC--CeeccCCCcceecCCcEEEEeee-CcccCceEEEEeCCccc
Q psy14532 81 VQ----KDHDRGVYWCTATNKQGRSSSQNVHISVTGA--PFVRPMGNVSAIAGEPLYLGCPV-AGYPIESITWQKGVQQL 153 (258)
Q Consensus 81 ~~----~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~--~~~~~~~~~~~~~g~~~~l~C~~-~~~~~~~i~W~~~~~~~ 153 (258)
+. ...|.|.|+|.+.|..+...+....|.+... .+-..+..+.+..|+.+.|.|.- .+.|.+.+.|.|+++.+
T Consensus 94 ~ahg~~a~~d~G~y~cvasn~~g~avSr~a~L~vavlrddfrv~prd~~~a~ge~avlEcgpP~ghpeptvSw~Kdg~pl 173 (1281)
T KOG4222|consen 94 LAHGKKAGHDHGVYSCVASNRLGEAVSRGASLIVAVLRDDFRVSPRDVQAAVGEEAVLECGPPRGHPEPTVSWVKDGKPL 173 (1281)
T ss_pred cccCCcccCCCceeEeeecCccceeeecCceEEEEEechhcccCcccccccccceeEEeccCCCCCCCCcceeecCCCcc
Confidence 41 1338999999999999887766666666543 33344556778889999999986 67889999999999988
Q ss_pred C--CCcceEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEeecCCccccCCCCCccCCCCeeeEEEEeccC
Q psy14532 154 P--LNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKG 231 (258)
Q Consensus 154 ~--~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~ 231 (258)
. ......+...+.|.|.++.. .|.|.|.|.+.|..+...+...+|.|..+|.+...+....+..|..+.+.|.+ .+
T Consensus 174 ~~~~~~~~~lisgG~LlIsnvrk-sD~GtY~CVatNmvG~ReS~~A~lsv~e~P~f~~rp~~~~v~~g~~~~f~c~v-~G 251 (1281)
T KOG4222|consen 174 DHYDVPIIALISGGNLLISNVRK-SDEGTYACVATNMVGERESIPARLSVQEKPWFWKRPKDLAVLVGAAAEFDCRV-GG 251 (1281)
T ss_pred ccccceeEEEecCCcEEEecccc-CCCceeeeeecccccccccccceeeeccCCccccccccceeeccccccccccc-CC
Confidence 7 33455567889999999998 99999999999999999999999999999999988888889999999999999 89
Q ss_pred CCCceeEEEECCEeccccccce
Q psy14532 232 DPPLTISWLKNGLPILSAMGVG 253 (258)
Q Consensus 232 ~p~~~~~W~~~g~~l~~~~~~~ 253 (258)
.|.+.+.|.+++..+.-..+.+
T Consensus 252 dP~P~Vrwkk~~~~~P~~ry~i 273 (1281)
T KOG4222|consen 252 DPQPTVRWKKDDPSLPRSRYSI 273 (1281)
T ss_pred CCCCceeeeccCCCCCccceee
Confidence 9999999999888777665443
No 7
>KOG4222|consensus
Probab=99.94 E-value=8.9e-26 Score=185.78 Aligned_cols=222 Identities=28% Similarity=0.494 Sum_probs=186.5
Q ss_pred cceeeceeeeecCCCceEEEEEE-eecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecc
Q psy14532 4 QLIYKFIQQTLQPGPPVSLKCIA-TGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQ 82 (258)
Q Consensus 4 ~~~~~~~~~~~~~g~~v~l~C~~-~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~ 82 (258)
.|.+.+.++.+..|+.++|.|.- .++|.+.+.|.|+|+++..+.... ..+...|.|.|.|+
T Consensus 133 dfrv~prd~~~a~ge~avlEcgpP~ghpeptvSw~Kdg~pl~~~~~~~-----------------~~lisgG~LlIsnv- 194 (1281)
T KOG4222|consen 133 DFRVSPRDVQAAVGEEAVLECGPPRGHPEPTVSWVKDGKPLDHYDVPI-----------------IALISGGNLLISNV- 194 (1281)
T ss_pred hcccCcccccccccceeEEeccCCCCCCCCcceeecCCCcccccccee-----------------EEEecCCcEEEecc-
Confidence 35667888999999999999975 567889999999999887442222 22345789999999
Q ss_pred cCCCceEEEEEEEeCCcceeeceEEEEEecCCeec-cCCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcceEE
Q psy14532 83 KDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVR-PMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKV 161 (258)
Q Consensus 83 ~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~-~~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~ 161 (258)
+..|+|.|.|++.|..|...+....|.|..+|.+. .+....+..|..+.+.|.+.|.|.+.+.|.+++..+........
T Consensus 195 rksD~GtY~CVatNmvG~ReS~~A~lsv~e~P~f~~rp~~~~v~~g~~~~f~c~v~GdP~P~Vrwkk~~~~~P~~ry~i~ 274 (1281)
T KOG4222|consen 195 RKSDEGTYACVATNMVGERESIPARLSVQEKPWFWKRPKDLAVLVGAAAEFDCRVGGDPQPTVRWKKDDPSLPRSRYSIL 274 (1281)
T ss_pred ccCCCceeeeeecccccccccccceeeeccCCccccccccceeecccccccccccCCCCCCceeeeccCCCCCccceeee
Confidence 99999999999999999888789999999887544 46677888999999999999999999999998777765544434
Q ss_pred ecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEeecCCccccCCCCCccCCCCeeeEEEEeccCCCCceeEEEE
Q psy14532 162 FPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISWLK 241 (258)
Q Consensus 162 ~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~ 241 (258)
....+|.|.++.. .|.|.|.|.+.|..+ .......+.|.++|.+...+....+..|..++|.|.+ .+.|.+.+.|.+
T Consensus 275 ~d~qtl~i~r~tp-~deg~y~C~a~n~vG-~l~asa~ltV~apP~f~kkp~dq~v~lg~~vt~pc~~-~gnP~PavfW~k 351 (1281)
T KOG4222|consen 275 DDTQTLRIDRVTP-TDEGTYVCPAENLVG-GLEASATLTVQAPPSFGKKPRDQKVALGGTVTFPCET-LGNPPPAVFWLK 351 (1281)
T ss_pred eccccccccccCC-Ccccceeeecccccc-ccccccceEEecCcccccccCccccccCceEEeeeec-CCCCCcceEEec
Confidence 4448899999997 999999999999988 4557778899999999988888899999999999999 699999999999
Q ss_pred CCEec
Q psy14532 242 NGLPI 246 (258)
Q Consensus 242 ~g~~l 246 (258)
.|...
T Consensus 352 eg~q~ 356 (1281)
T KOG4222|consen 352 EGSQD 356 (1281)
T ss_pred cCcce
Confidence 76544
No 8
>KOG4221|consensus
Probab=99.93 E-value=5.3e-24 Score=176.46 Aligned_cols=226 Identities=29% Similarity=0.495 Sum_probs=181.9
Q ss_pred cceeeceeeeecCCCceEEEEEEeec--CCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeec
Q psy14532 4 QLIYKFIQQTLQPGPPVSLKCIATGN--PTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENV 81 (258)
Q Consensus 4 ~~~~~~~~~~~~~g~~v~l~C~~~~~--~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~ 81 (258)
.|..++.+. .+|..+.|.|..... +.+.+.|.|||..+...... +..+..|++|.|.++
T Consensus 43 ~f~~ep~d~--~~~~svlLecs~~~~~~~~~~i~wkkDg~~l~e~~d~-----------------~~~~LsNgSl~i~~v 103 (1381)
T KOG4221|consen 43 QFLLEPSDA--MEGSSVLLECSAYAAGGTSVKIEWKKDGSQLNEVYDD-----------------RRQLLSNGSLYISSV 103 (1381)
T ss_pred eEEeccccc--ccccceEEeccccccCCCCeeEEEccCchhhhhhhhh-----------------HHhhccCCceeEeee
Confidence 455666654 899999999986543 46789999998776554222 223446999999998
Q ss_pred ccC-----CCceEEEEEEEeC-CcceeeceEEEEEecCCe-eccCCCcceecCCcEEEEeeeCcccCceEEEEeCCcccC
Q psy14532 82 QKD-----HDRGVYWCTATNK-QGRSSSQNVHISVTGAPF-VRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLP 154 (258)
Q Consensus 82 ~~~-----~d~G~Y~C~~~~~-~~~~~~~~~~l~v~~~~~-~~~~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~ 154 (258)
.. .|+|.|.|.++.. .+..-+..+.|.+...+. ........+..|+++.|.|.+.+.+-+.+.|.++..++.
T Consensus 104 -~~~kh~~~~eg~Yqc~atv~~~gsi~Sr~a~v~~a~~~~f~~~~~~~t~~~g~ta~f~c~vn~e~~p~i~w~kn~~pl~ 182 (1381)
T KOG4221|consen 104 -LASKHNKVDEGVYQCLATVEDVGSILSRTAKVALAGLADFALQPESTTLLYGQTALFSCEVNAEPVPTIMWLKNDQPLP 182 (1381)
T ss_pred -cccccccccCceEEEEEEccccceeecceEEEEecccCccccCccceeEecCCcEEEEEEEcCccCceeEEeccccccc
Confidence 66 7899999999986 455556778888876653 334667788999999999999998888999999999888
Q ss_pred CCcceEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEeecCCcc------ccCCCCCccCCCCeeeEEEEe
Q psy14532 155 LNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKI------APFEFQPDLHSGDRAGVQCLV 228 (258)
Q Consensus 155 ~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~------~~~~~~~~~~~g~~~~l~C~~ 228 (258)
...++....++.|.|..+.. .|.|.|.|.|.+......+....|.+...|.. ...+....+..|+.+.|.|.+
T Consensus 183 ~~~r~i~lpsG~L~I~~~qp-~d~g~yrc~vt~g~~~r~S~~a~ltv~s~~~~~~~~~fl~~p~~~~v~~g~~v~leCvv 261 (1381)
T KOG4221|consen 183 LDSRVIVLPSGALEISGLQP-SDTGEYRCVVTGGASQRTSNEAELTVLSDPGALNKLVFLDEPSNAVVVEGDDVVLECVV 261 (1381)
T ss_pred CCCcEEEcCCCcEEeccccc-CCCceEEEEEecCCcCCccceeEEEecCCcccccceeeecCCCccccccCCcEEEEEEe
Confidence 88888889999999999997 99999999999988666678888888744432 223556678899999999999
Q ss_pred ccCCCCceeEEEECCEecccccc
Q psy14532 229 TKGDPPLTISWLKNGLPILSAMG 251 (258)
Q Consensus 229 ~~~~p~~~~~W~~~g~~l~~~~~ 251 (258)
.+.|.|.|.|.+||..|.-.+.
T Consensus 262 -s~~p~p~v~Wlrng~~i~~ds~ 283 (1381)
T KOG4221|consen 262 -SGVPKPSVKWLRNGEKISVDSY 283 (1381)
T ss_pred -cCCCCCceEEeeCCeeeeecce
Confidence 7999999999999999987753
No 9
>KOG4194|consensus
Probab=99.92 E-value=5.9e-24 Score=165.47 Aligned_cols=208 Identities=27% Similarity=0.447 Sum_probs=157.1
Q ss_pred CCcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEe-CcCCccccceecccceeeccccccceeeeeCCcEEEee
Q psy14532 2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYP-LAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIEN 80 (258)
Q Consensus 2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~ 80 (258)
.|.|...|.++++..|+.+.|.|.++|.|.|++.|.|+|.. .+.......+ .+-.+..+.|.|
T Consensus 612 ~PsFtktP~dltl~tg~mArl~CaAtG~P~PeIawqkdggtdFPAA~eRRl~----------------Vmpedd~f~Itn 675 (873)
T KOG4194|consen 612 APSFTKTPEDLTLRTGQMARLECAATGHPRPEIAWQKDGGTDFPAARERRLH----------------VMPEDDVFFITN 675 (873)
T ss_pred cCccccCcccceeecccceeeeeeccCCCCcceeehhcCCCCCchhhhheee----------------ecCCCCEEEEec
Confidence 58999999999999999999999999999999999997643 4333221222 222456789999
Q ss_pred cccCCCceEEEEEEEeCCcceeeceEEEEEecCCee-ccCCCcceecCCcEEEEeeeCcccC-ceEEEEeCCcccCCCcc
Q psy14532 81 VQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFV-RPMGNVSAIAGEPLYLGCPVAGYPI-ESITWQKGVQQLPLNRR 158 (258)
Q Consensus 81 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~-~~~~~~~~~~g~~~~l~C~~~~~~~-~~i~W~~~~~~~~~~~~ 158 (258)
+ +.+|+|.|+|.+.+..|+.+ ..+.|.|...|.. .+..+..+..|+++.|.|.+.+.|. |.+.|+|+++++....+
T Consensus 676 v-k~eD~GiYtC~A~n~AG~is-anAtL~V~e~p~f~~PL~~~~V~~get~vlqC~a~~~~a~pr~~W~k~d~pil~t~r 753 (873)
T KOG4194|consen 676 V-KIEDQGIYTCTAQNVAGQIS-ANATLTVLETPSFSIPLEDQLVVVGETLVLQCLAEGAPADPRLEWFKEDKPILITER 753 (873)
T ss_pred c-cccccceeEEeeecccccee-eceEEEEecCCcccccccceEEEecceEEEEEecCCCCCCccccccCCCCceEEeec
Confidence 9 99999999999999999998 9999999988654 4567788999999999999999776 99999999999877766
Q ss_pred eEEecCC-eEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEeecCCccccCC-CCCccCCCCeeeEEEEec
Q psy14532 159 QKVFPNG-TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFE-FQPDLHSGDRAGVQCLVT 229 (258)
Q Consensus 159 ~~~~~~~-~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~-~~~~~~~g~~~~l~C~~~ 229 (258)
.....+. .|.+.+... +|+|.|+|+..+..+ .....+.+.+...+.-.... ....+..-..+.+.|.+.
T Consensus 754 h~f~d~dQllvv~~~~~-~daG~yTcem~~~~~-~~~~~i~l~~~~~~~~~~Se~~~Tq~~~riia~vs~~vd 824 (873)
T KOG4194|consen 754 HTFPDGDQLLVVKENLV-EDAGIYTCEMSNTLG-TERIHICLLVYQKKKCRMSEDGSTQVGIRIIAVVSCSVD 824 (873)
T ss_pred ccCCCCCeEEEEEehhh-hhcceEEEEEEeecc-ceeeEEEEEEeecCCcccccCCccEEEEEEEEEEeeeec
Confidence 6554444 466777776 999999999999887 44455666655544322221 111222233456667663
No 10
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.91 E-value=9e-23 Score=146.87 Aligned_cols=166 Identities=18% Similarity=0.286 Sum_probs=116.7
Q ss_pred ceeeeecCCCceEEEEEEeec-----------CCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEE
Q psy14532 9 FIQQTLQPGPPVSLKCIATGN-----------PTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLL 77 (258)
Q Consensus 9 ~~~~~~~~g~~v~l~C~~~~~-----------~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 77 (258)
+....+.+|++|.|.|.+.+. ..+.+.|+|++..........+. .............+++|.
T Consensus 29 ~~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~-------~~~~i~~~~~~~r~~~L~ 101 (227)
T PHA02826 29 LTPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGART-------KIKKITHNEIGDRSENLW 101 (227)
T ss_pred cceEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCcc-------ccccccccceecCCCeEE
Confidence 456778999999999997653 34589999987542111000000 000000011112356899
Q ss_pred EeecccCCCceEEEEEEEeCCcceeeceEEEEEecCCeeccCCCcceecCCcEEEEeeeCc-----ccCceEEEEeCCcc
Q psy14532 78 IENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGNVSAIAGEPLYLGCPVAG-----YPIESITWQKGVQQ 152 (258)
Q Consensus 78 i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~g~~~~l~C~~~~-----~~~~~i~W~~~~~~ 152 (258)
|.++ +.+|+|.|.|.+.+..+... ..+.|.|...+ ....+.+|+.+.|.|.+.+ .|.|.++|++++..
T Consensus 102 I~~v-~~~DsG~Y~C~a~N~~~~~~-~~i~L~V~~~~-----~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~ 174 (227)
T PHA02826 102 IGNV-INIDEGIYICTISSGNICEE-STIRLTFDSGT-----INYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNI 174 (227)
T ss_pred ECCC-ChHHCEEEEEEEEECCcceE-EEEEEEEecCC-----ccceEecCCCEEEEeeCCCCccccCCCceEEEEECCEE
Confidence 9999 99999999999999776655 77777775322 2345678999999999753 35789999999998
Q ss_pred cCCCcceEEec-CCeEEEEecccCCCCcEEEEEEEeCC
Q psy14532 153 LPLNRRQKVFP-NGTLLIENVQKDHDRGVYWCTATNKQ 189 (258)
Q Consensus 153 ~~~~~~~~~~~-~~~l~i~~~~~~~~~g~y~C~~~~~~ 189 (258)
+....+..+.. .++|.|.+++. +|+|.|+|.+....
T Consensus 175 l~~~~r~~~~~~~~~L~I~~V~~-~DsG~YtC~a~~~~ 211 (227)
T PHA02826 175 VLYTDRIQLRNNNSTLVIKSATH-DDSGIYTCNLRFNK 211 (227)
T ss_pred CCCCCCEEEeCCCCEEEECcCCH-HhCEEEEEEEEEeE
Confidence 87666555543 35799999998 99999999999754
No 11
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.85 E-value=1.3e-19 Score=138.67 Aligned_cols=159 Identities=21% Similarity=0.322 Sum_probs=111.7
Q ss_pred ceeeeecCCCceEEEEEE-----eecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeeccc
Q psy14532 9 FIQQTLQPGPPVSLKCIA-----TGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQK 83 (258)
Q Consensus 9 ~~~~~~~~g~~v~l~C~~-----~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~ 83 (258)
+.+..+.+|+.+.|.|.. .+.+.+.++|++++. +.. .+ .....++.|.|.++ +
T Consensus 128 ~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~~-~~~----~r----------------~~~~~~~~L~i~~v-~ 185 (326)
T PHA02785 128 SYPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHRR-LRN----KR----------------LKQRTPGIITIEDV-R 185 (326)
T ss_pred eccceecccCcEEEECCChhhcccCCCCceEEEccCCc-cCC----cc----------------eEecCCCeEEEeec-C
Confidence 344567899999999972 345778999987542 211 11 11223568999999 9
Q ss_pred CCCceEEEEEEEeCCccee---eceEEEEEec---CCeeccCCCcceecCCcEEEEeeeCcccC---ceEEEEeCCcccC
Q psy14532 84 DHDRGVYWCTATNKQGRSS---SQNVHISVTG---APFVRPMGNVSAIAGEPLYLGCPVAGYPI---ESITWQKGVQQLP 154 (258)
Q Consensus 84 ~~d~G~Y~C~~~~~~~~~~---~~~~~l~v~~---~~~~~~~~~~~~~~g~~~~l~C~~~~~~~---~~i~W~~~~~~~~ 154 (258)
.+|+|.|+|.+.+..+... +..+.|.|.. +|.+..+....+..|+.+.|.|.+.+.|. +.+.|++|+..+.
T Consensus 186 ~~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~~~~pp~~~~p~~~~~~~G~~v~L~C~a~g~P~~~~~~v~W~kng~~i~ 265 (326)
T PHA02785 186 KNDAGYYTCVLKYIYGDKTYNVTRIVKLEVRDRIIPPTMQLPEGVVTSIGSNLTIACRVSLRPPTTDADVFWISNGMYYE 265 (326)
T ss_pred hhhCeEEEEEEEeccCCEEEeEEEEEEEEEeccCCCceecCCCcEEecCCCcEEEEEEEECCCCCCCceEEEEECCEECC
Confidence 9999999999999776542 2344565542 33333345566778999999999998775 4899999998764
Q ss_pred CCc-----ceEE-----------ecCCeEEEEecccCCCCcEEEEEEEeCCC
Q psy14532 155 LNR-----RQKV-----------FPNGTLLIENVQKDHDRGVYWCTATNKQG 190 (258)
Q Consensus 155 ~~~-----~~~~-----------~~~~~l~i~~~~~~~~~g~y~C~~~~~~~ 190 (258)
... +... ...+.|.|.+++. +|.|.|+|.|.|..+
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~-~D~G~Y~C~A~n~~~ 316 (326)
T PHA02785 266 EDDEDGDGRISVANKIYTTDKRRVITSRLNINPVKE-EDATTFTCMAFTIPS 316 (326)
T ss_pred CcCCCCceeEEEecCccccccceeeeEEEEECCcch-hcCeeeEEEEEeccC
Confidence 321 1111 1134699999987 999999999999764
No 12
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.77 E-value=6.2e-18 Score=104.34 Aligned_cols=87 Identities=29% Similarity=0.516 Sum_probs=72.7
Q ss_pred CCcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeec
Q psy14532 2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENV 81 (258)
Q Consensus 2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~ 81 (258)
||.|...+.+..+.+|+.+.|.|.+.|.|.|.++|+|++..+... .... ..++.|.|.++
T Consensus 1 ~p~i~~~~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~---~~~~-----------------~~~~~L~I~~v 60 (88)
T cd05851 1 PADINVKFKDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPAT---AEIS-----------------MSGAVLKIFNI 60 (88)
T ss_pred CCceEEccccEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCCC---CEEe-----------------cCCCEEEECcC
Confidence 799999999999999999999999999999999999998765432 1111 12457999999
Q ss_pred ccCCCceEEEEEEEeCCcceeeceEEEEE
Q psy14532 82 QKDHDRGVYWCTATNKQGRSSSQNVHISV 110 (258)
Q Consensus 82 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 110 (258)
+.+|+|.|+|.+.|..|... ..+.|.|
T Consensus 61 -~~~D~G~Y~C~A~N~~G~~~-~~~~l~V 87 (88)
T cd05851 61 -QPEDEGTYECEAENIKGKDK-HQARVYV 87 (88)
T ss_pred -ChhhCEEEEEEEEcCCCceE-EEEEEEE
Confidence 99999999999999999876 6677765
No 13
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.76 E-value=1.1e-17 Score=105.17 Aligned_cols=95 Identities=22% Similarity=0.295 Sum_probs=78.7
Q ss_pred CcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecc
Q psy14532 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQ 82 (258)
Q Consensus 3 p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~ 82 (258)
|.|...+.++.+.+|+.+.|.|.+.|.|.+.+.|+|++..+... .++.+. .......|.|.++
T Consensus 1 p~~~~~p~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~---~~~~~~-------------~~~~~s~L~I~~~- 63 (98)
T cd05762 1 PQIIQFPEDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEG---EGIKIE-------------NTENSSKLTITEG- 63 (98)
T ss_pred CceEECCcCEEEECCCEEEEEEEEcccCCCceEEEECCEEecCC---CcEEEE-------------ecCCeeEEEECCC-
Confidence 78888999999999999999999999999999999999988644 122111 0012357999999
Q ss_pred cCCCceEEEEEEEeCCcceeeceEEEEEecCCe
Q psy14532 83 KDHDRGVYWCTATNKQGRSSSQNVHISVTGAPF 115 (258)
Q Consensus 83 ~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~ 115 (258)
...|+|.|+|.+.|..|... ..+.|.|...|.
T Consensus 64 ~~~D~G~Ytc~a~N~~G~~~-~~~~l~V~~~P~ 95 (98)
T cd05762 64 QQEHCGCYTLEVENKLGSRQ-AQVNLTVVDKPD 95 (98)
T ss_pred ChhhCEEEEEEEEcCCCcee-EEEEEEEecCCC
Confidence 99999999999999999988 789999987763
No 14
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.70 E-value=2.9e-16 Score=98.04 Aligned_cols=89 Identities=20% Similarity=0.412 Sum_probs=70.9
Q ss_pred CCcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeec
Q psy14532 2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENV 81 (258)
Q Consensus 2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~ 81 (258)
||+|...|.++.+.+|+++.|.|.+.+.|.+.+.|+|++..+... .++.+. .....++|.|.++
T Consensus 3 ~~~~~~~p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~---~~~~~~-------------~~~~~~~L~i~~~ 66 (92)
T cd05747 3 PATILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSS---QRHQIT-------------STEYKSTFEISKV 66 (92)
T ss_pred CCcccccCccEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCCC---CcEEEE-------------EcCCeeEEEECCC
Confidence 789999999999999999999999999999999999998876543 111111 0012357999999
Q ss_pred ccCCCceEEEEEEEeCCcceeeceEEE
Q psy14532 82 QKDHDRGVYWCTATNKQGRSSSQNVHI 108 (258)
Q Consensus 82 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l 108 (258)
..+|+|.|.|.+.|..|... ..+.|
T Consensus 67 -~~~D~G~Y~C~a~N~~G~~~-~~~~l 91 (92)
T cd05747 67 -QMSDEGNYTVVVENSEGKQE-AQFTL 91 (92)
T ss_pred -CcccCEeEEEEEEcCCCCEe-EEEEe
Confidence 99999999999999998766 55544
No 15
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.68 E-value=7.9e-16 Score=95.29 Aligned_cols=87 Identities=26% Similarity=0.459 Sum_probs=70.9
Q ss_pred CCcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeec
Q psy14532 2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENV 81 (258)
Q Consensus 2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~ 81 (258)
||.+...+.+..+.+|+++.|.|.+.+.|.+.+.|+|++..+... .. ....+++|.|.++
T Consensus 1 p~~~~~~p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~---~~-----------------~~~~~~~L~i~~v 60 (88)
T cd04968 1 PSIIVVFPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSS---AE-----------------ISMSGAVLKIPNI 60 (88)
T ss_pred CCcEEECCCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCc---cE-----------------EEEeCCEEEECCC
Confidence 577788889999999999999999999999999999987644322 00 0124678999999
Q ss_pred ccCCCceEEEEEEEeCCcceeeceEEEEE
Q psy14532 82 QKDHDRGVYWCTATNKQGRSSSQNVHISV 110 (258)
Q Consensus 82 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 110 (258)
+.+|+|.|+|.+.|..|... ..+.|.|
T Consensus 61 -~~~D~G~Y~C~a~N~~G~~~-~~~~l~V 87 (88)
T cd04968 61 -QFEDEGTYECEAENIKGKDT-HQGRIYV 87 (88)
T ss_pred -CcccCEEEEEEEEECCCcEE-EEEEEEE
Confidence 99999999999999998876 6677765
No 16
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.68 E-value=5.2e-16 Score=96.80 Aligned_cols=90 Identities=32% Similarity=0.618 Sum_probs=73.5
Q ss_pred CcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecc
Q psy14532 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQ 82 (258)
Q Consensus 3 p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~ 82 (258)
|+|...+.++.+.+|+++.|.|.+.+.|.+.+.|++++..+... .++.+. ......+|.|.++
T Consensus 1 P~~~~~~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~---~~~~~~-------------~~~~~~~L~I~~v- 63 (90)
T PF07679_consen 1 PVFTKKPKDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTSS---QRYQIE-------------SDGGSSSLTIKNV- 63 (90)
T ss_dssp EEEEEESSEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEESS---SSEEEE-------------EETTEEEEEESSE-
T ss_pred CEEEEecCCEEEeCCCEEEEEEEEEeCCCCcccccccccceeee---eeeeee-------------cccceeEEccCCC-
Confidence 78889999999999999999999999999999999999888764 222221 0113557999999
Q ss_pred cCCCceEEEEEEEeCCcceeeceEEEEE
Q psy14532 83 KDHDRGVYWCTATNKQGRSSSQNVHISV 110 (258)
Q Consensus 83 ~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 110 (258)
..+|+|.|+|.+.+..+... ..+.|.|
T Consensus 64 ~~~D~G~Y~C~~~n~~g~~~-~~~~l~V 90 (90)
T PF07679_consen 64 TREDAGTYTCVASNSSGEAT-ASVNLTV 90 (90)
T ss_dssp SGGGSEEEEEEEEETTEEEE-EEEEEEE
T ss_pred ChhhCEEEEEEEEECCCEEE-EEEEEEC
Confidence 99999999999999987776 6677665
No 17
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.68 E-value=7e-16 Score=94.67 Aligned_cols=84 Identities=30% Similarity=0.561 Sum_probs=68.7
Q ss_pred ceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccC
Q psy14532 5 LIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKD 84 (258)
Q Consensus 5 ~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~ 84 (258)
+...|.++.+.+|+++.|.|.+.+.|.+.+.|+|++..+... .+.. ..++.|.|.++ ..
T Consensus 2 ~~~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~---~~~~-----------------~~~~~L~i~~~-~~ 60 (85)
T cd05728 2 WLKVISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASE---NRIE-----------------VEAGDLRITKL-SL 60 (85)
T ss_pred ccccCCccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCCC---CeEE-----------------EeCCEEEEeeC-CH
Confidence 456788899999999999999999999999999999877543 1111 13567999999 99
Q ss_pred CCceEEEEEEEeCCcceeeceEEEEE
Q psy14532 85 HDRGVYWCTATNKQGRSSSQNVHISV 110 (258)
Q Consensus 85 ~d~G~Y~C~~~~~~~~~~~~~~~l~v 110 (258)
+|+|.|+|.+.|..|... .++.|.|
T Consensus 61 ~D~G~Y~C~a~N~~G~~~-~~~~l~V 85 (85)
T cd05728 61 SDSGMYQCVAENKHGTIY-ASAELAV 85 (85)
T ss_pred HHCEEEEEEEECCCCeEE-EEEEEEC
Confidence 999999999999998776 6666653
No 18
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.67 E-value=1.2e-15 Score=95.88 Aligned_cols=92 Identities=28% Similarity=0.527 Sum_probs=70.8
Q ss_pred CCcceeec--eeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEe
Q psy14532 2 HPQLIYKF--IQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIE 79 (258)
Q Consensus 2 ~p~~~~~~--~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~ 79 (258)
||.|.... .+..+..|+++.|.|.+.|.|.+.+.|++++..+.... .++... .....|.|.
T Consensus 1 pp~i~~~~~~~~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~--~~~~~~---------------~~~~~L~I~ 63 (95)
T cd05730 1 PPTIRARQSEVNATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGE--EKYSFN---------------EDGSEMTIL 63 (95)
T ss_pred CCccccCCcccceEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCCC--CEEEEe---------------CCCCEEEEC
Confidence 67776544 44578999999999999999999999999998775431 111110 113469999
Q ss_pred ecccCCCceEEEEEEEeCCcceeeceEEEEEec
Q psy14532 80 NVQKDHDRGVYWCTATNKQGRSSSQNVHISVTG 112 (258)
Q Consensus 80 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~ 112 (258)
++ ..+|+|.|+|.+.|..|... ..+.|.|..
T Consensus 64 ~v-~~~D~G~Y~C~a~N~~G~~~-~~~~L~V~~ 94 (95)
T cd05730 64 DV-DKLDEAEYTCIAENKAGEQE-AEIHLKVFA 94 (95)
T ss_pred CC-ChhhCEEEEEEEEcCCCeEE-EEEEEEEEe
Confidence 99 99999999999999999876 788888764
No 19
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.66 E-value=2.5e-15 Score=108.46 Aligned_cols=124 Identities=25% Similarity=0.377 Sum_probs=88.3
Q ss_pred CCcceecCCcEEEEeeeCccc-----------CceEEEEeCCccc--CC-Ccc--------eE-EecCCeEEEEecccCC
Q psy14532 120 GNVSAIAGEPLYLGCPVAGYP-----------IESITWQKGVQQL--PL-NRR--------QK-VFPNGTLLIENVQKDH 176 (258)
Q Consensus 120 ~~~~~~~g~~~~l~C~~~~~~-----------~~~i~W~~~~~~~--~~-~~~--------~~-~~~~~~l~i~~~~~~~ 176 (258)
....+.+|+.+.|.|.+.+.+ ...+.|++++... .. +.+ .. ...++.|.|.++.. +
T Consensus 30 ~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~-~ 108 (227)
T PHA02826 30 TPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVIN-I 108 (227)
T ss_pred ceEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCCh-H
Confidence 345678999999999986643 3489999986431 00 000 01 12356899999997 9
Q ss_pred CCcEEEEEEEeCCCCCccceEEEEeecCCccccCCCCCccCCCCeeeEEEEeccC----CCCceeEEEECCEecccccc
Q psy14532 177 DRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKG----DPPLTISWLKNGLPILSAMG 251 (258)
Q Consensus 177 ~~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~----~p~~~~~W~~~g~~l~~~~~ 251 (258)
|+|.|+|.|.|..+. ....+.|.|..++ ....+.+|+.+.|.|.+.++ .|.+.+.|+++|+.|..+..
T Consensus 109 DsG~Y~C~a~N~~~~-~~~~i~L~V~~~~------~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~~~~r 180 (227)
T PHA02826 109 DEGIYICTISSGNIC-EESTIRLTFDSGT------INYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVLYTDR 180 (227)
T ss_pred HCEEEEEEEEECCcc-eEEEEEEEEecCC------ccceEecCCCEEEEeeCCCCccccCCCceEEEEECCEECCCCCC
Confidence 999999999997653 4455666664321 23456789999999998544 45789999999999976544
No 20
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.66 E-value=1.7e-15 Score=90.96 Aligned_cols=75 Identities=33% Similarity=0.748 Sum_probs=60.2
Q ss_pred CCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEEEEEEe
Q psy14532 17 GPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATN 96 (258)
Q Consensus 17 g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~~~~ 96 (258)
|+++.|.|.+.+.|.|.++|+|+|..+.......++ ...+++|.|.++ +.+|+|.|.|.+.|
T Consensus 1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~-----------------~~~~~~L~I~~~-~~~D~G~Y~C~a~N 62 (76)
T cd05867 1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRR-----------------HVSSGALILTDV-QPSDTAVYQCEARN 62 (76)
T ss_pred CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceE-----------------EeeCCEEEECCC-ChhhCEEEEEEEEC
Confidence 789999999999999999999999877643211111 123578999999 99999999999999
Q ss_pred CCcceeeceEEEEE
Q psy14532 97 KQGRSSSQNVHISV 110 (258)
Q Consensus 97 ~~~~~~~~~~~l~v 110 (258)
..|... ..+.|.|
T Consensus 63 ~~G~~~-~~~~l~V 75 (76)
T cd05867 63 RHGNLL-ANAHVHV 75 (76)
T ss_pred CCCeEE-EEEEEEE
Confidence 998876 6777765
No 21
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.66 E-value=1e-15 Score=91.45 Aligned_cols=74 Identities=36% Similarity=0.627 Sum_probs=60.0
Q ss_pred CCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEEEEEE
Q psy14532 16 PGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTAT 95 (258)
Q Consensus 16 ~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~~~ 95 (258)
+|+++.|.|.+.+.|.|.+.|+|++..+... .+. .+..+++|.|.++ +.+|+|.|+|.+.
T Consensus 1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~---~~~----------------~~~~~~~L~I~~v-~~~D~G~Y~C~A~ 60 (74)
T cd05745 1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVD---RRH----------------LVLSSGTLRISRV-ALHDQGQYECQAV 60 (74)
T ss_pred CCCeEEEEeECCEecCCEEEEEECCEECCCC---CCe----------------EEccCCeEEEeeC-CHHhCEEEEEEEE
Confidence 6999999999999999999999999877543 111 1123568999999 9999999999999
Q ss_pred eCCcceeeceEEEEE
Q psy14532 96 NKQGRSSSQNVHISV 110 (258)
Q Consensus 96 ~~~~~~~~~~~~l~v 110 (258)
|..|... ..+.|.|
T Consensus 61 N~~G~~~-~~~~L~V 74 (74)
T cd05745 61 NIVGSQR-TVAQLTV 74 (74)
T ss_pred eCCCcee-EEEEEeC
Confidence 9998876 6666653
No 22
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.65 E-value=2.3e-15 Score=94.61 Aligned_cols=87 Identities=26% Similarity=0.316 Sum_probs=72.9
Q ss_pred cCCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcceEEe---cCCeEEEEecccCCCCcEEEEEEEeCCCCCcc
Q psy14532 118 PMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVF---PNGTLLIENVQKDHDRGVYWCTATNKQGRSSS 194 (258)
Q Consensus 118 ~~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~ 194 (258)
.+....+..|+.+.|.|.+.|.|.+.+.|++++..+....++.+. ..+.|.|.++.. +|.|.|+|.+.|..|. ..
T Consensus 6 ~p~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~~~~~~~~~~~~s~L~I~~~~~-~D~G~Ytc~a~N~~G~-~~ 83 (98)
T cd05762 6 FPEDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEGEGIKIENTENSSKLTITEGQQ-EHCGCYTLEVENKLGS-RQ 83 (98)
T ss_pred CCcCEEEECCCEEEEEEEEcccCCCceEEEECCEEecCCCcEEEEecCCeeEEEECCCCh-hhCEEEEEEEEcCCCc-ee
Confidence 456678899999999999999999999999999988766555543 245799999997 9999999999999994 55
Q ss_pred ceEEEEeecCCc
Q psy14532 195 QNVHISVTVPPK 206 (258)
Q Consensus 195 ~~~~l~v~~~p~ 206 (258)
..+.|.|...|.
T Consensus 84 ~~~~l~V~~~P~ 95 (98)
T cd05762 84 AQVNLTVVDKPD 95 (98)
T ss_pred EEEEEEEecCCC
Confidence 678888887764
No 23
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.65 E-value=1.3e-15 Score=90.99 Aligned_cols=73 Identities=37% Similarity=0.674 Sum_probs=61.8
Q ss_pred cCCcEEEEeeeCcccCceEEEEeCCcccCCCcceEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEE
Q psy14532 126 AGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHIS 200 (258)
Q Consensus 126 ~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~ 200 (258)
+|+.+.|.|.+.|.|.|.++|++++..+....+..+..++.|.|.++.. +|.|.|+|.|.|..|. .+..+.|.
T Consensus 1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~A~N~~G~-~~~~~~L~ 73 (74)
T cd05745 1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVLSSGTLRISRVAL-HDQGQYECQAVNIVGS-QRTVAQLT 73 (74)
T ss_pred CCCeEEEEeECCEecCCEEEEEECCEECCCCCCeEEccCCeEEEeeCCH-HhCEEEEEEEEeCCCc-eeEEEEEe
Confidence 5889999999999999999999999888766666666778999999997 9999999999999884 44455554
No 24
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.65 E-value=4.8e-15 Score=92.57 Aligned_cols=89 Identities=27% Similarity=0.459 Sum_probs=67.5
Q ss_pred CCcceeeceeeeec---CCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEE
Q psy14532 2 HPQLIYKFIQQTLQ---PGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLI 78 (258)
Q Consensus 2 ~p~~~~~~~~~~~~---~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i 78 (258)
.|.|+..|.++.+. +|+++.|.|.+.|.|.+.++|+|++..+..... .++ ...+++|.|
T Consensus 1 ~P~f~~~p~~~~~~~~~~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~~-~~~-----------------~~~~g~L~i 62 (94)
T cd05848 1 GPVFVQEPDDAIFPTDSDEKKVILNCEARGNPVPTYRWLRNGTEIDTESD-YRY-----------------SLIDGNLII 62 (94)
T ss_pred CCeeEECCCcEEccCCCCCCEEEEEEEeeecCCCEEEEEECCeECccCCC-ceE-----------------EeeCCeEEE
Confidence 37888888887654 478999999999999999999999988754311 111 123568999
Q ss_pred eecccCCCceEEEEEEEeCCcceeeceEEE
Q psy14532 79 ENVQKDHDRGVYWCTATNKQGRSSSQNVHI 108 (258)
Q Consensus 79 ~~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l 108 (258)
.++....|+|.|+|.+.|..|...+..+.|
T Consensus 63 ~~~~~~~D~G~Y~C~A~N~~G~~~S~~~~l 92 (94)
T cd05848 63 SNPSEVKDSGRYQCLATNSIGSILSREALL 92 (94)
T ss_pred ccCCccCcCEEEEEEEEcCCCeEEeccEEE
Confidence 887236899999999999998776555544
No 25
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.65 E-value=1.5e-15 Score=89.93 Aligned_cols=73 Identities=29% Similarity=0.570 Sum_probs=59.0
Q ss_pred CCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEEEEEEe
Q psy14532 17 GPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATN 96 (258)
Q Consensus 17 g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~~~~ 96 (258)
|+++.|.|.+.+.|.+.+.|+|++..+... .++ .+..+++|.|.++ +.+|+|.|.|.+.|
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~~---~r~----------------~~~~~g~L~I~~v-~~~D~G~Y~C~A~N 60 (73)
T cd05852 1 GGRVIIECKPKAAPKPKFSWSKGTELLVNN---SRI----------------SIWDDGSLEILNI-TKLDEGSYTCFAEN 60 (73)
T ss_pred CCeEEEEEecceeCCCEEEEEeCCEecccC---CCE----------------EEcCCCEEEECcC-ChhHCEEEEEEEEC
Confidence 789999999999999999999998766433 222 2234678999999 99999999999999
Q ss_pred CCcceeeceEEEEE
Q psy14532 97 KQGRSSSQNVHISV 110 (258)
Q Consensus 97 ~~~~~~~~~~~l~v 110 (258)
..|... ..+.|+|
T Consensus 61 ~~G~~~-~~~~l~~ 73 (73)
T cd05852 61 NRGKAN-STGVLSV 73 (73)
T ss_pred CCCcee-EEEEEEC
Confidence 998877 6666653
No 26
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.64 E-value=3.2e-15 Score=91.65 Aligned_cols=83 Identities=22% Similarity=0.422 Sum_probs=64.6
Q ss_pred eeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEE
Q psy14532 11 QQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVY 90 (258)
Q Consensus 11 ~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y 90 (258)
.+.+.+|+++.|.|.+.|.|.|.+.|+|++.++.... .++.+. .....++|.|.++ ..+|+|.|
T Consensus 4 ~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~--~r~~~~-------------~~~~~~~L~I~~~-~~~D~G~Y 67 (86)
T cd05894 4 TIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETE--GRVRVE-------------SYKDLSSFVIEGA-EREDEGVY 67 (86)
T ss_pred EEEEEcCCEEEEEeeEeecCCCeEEEEECCEECccCC--CeEEEE-------------EcCCeEEEEECCC-ccCcCEEE
Confidence 4678899999999999999999999999998876431 122111 0011357999999 99999999
Q ss_pred EEEEEeCCcceeeceEEEEE
Q psy14532 91 WCTATNKQGRSSSQNVHISV 110 (258)
Q Consensus 91 ~C~~~~~~~~~~~~~~~l~v 110 (258)
+|.+.|..|... ..+.|.|
T Consensus 68 ~c~a~N~~G~~~-~~~~l~V 86 (86)
T cd05894 68 TITVTNPVGEDH-ASLFVKV 86 (86)
T ss_pred EEEEEeCCCcEE-EEEEEEC
Confidence 999999999876 6666654
No 27
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.64 E-value=4.9e-15 Score=93.25 Aligned_cols=89 Identities=19% Similarity=0.303 Sum_probs=66.3
Q ss_pred eeeeecCCCceEEEEEEee-cCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCce
Q psy14532 10 IQQTLQPGPPVSLKCIATG-NPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRG 88 (258)
Q Consensus 10 ~~~~~~~g~~v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G 88 (258)
..+.+.+|+++.|.|.+.+ .|.|.+.|+|+|.++.... ...+... .........+|.|.++ ..+|+|
T Consensus 11 ~~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~---~~~~~~~--------~~~~~~~~~~L~i~~v-~~~D~G 78 (101)
T cd04975 11 TTIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKL---TEIVTSE--------NESEYRYVSELKLVRL-KESEAG 78 (101)
T ss_pred ceEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCc---ceeEEEe--------ccCcceEEEEEEEeec-CHhhCe
Confidence 4577899999999999999 8999999999999886431 1110000 0000012357999999 999999
Q ss_pred EEEEEEEeCCcceeeceEEEEEe
Q psy14532 89 VYWCTATNKQGRSSSQNVHISVT 111 (258)
Q Consensus 89 ~Y~C~~~~~~~~~~~~~~~l~v~ 111 (258)
.|+|.|.|..|... ..+.|.|.
T Consensus 79 ~Ytc~A~N~~G~~~-~t~~L~V~ 100 (101)
T cd04975 79 TYTFLASNSDASKS-LTFELYVN 100 (101)
T ss_pred eEEEEEECCCccEE-EEEEEEEE
Confidence 99999999999776 77777764
No 28
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.63 E-value=9.6e-15 Score=91.26 Aligned_cols=90 Identities=27% Similarity=0.458 Sum_probs=68.6
Q ss_pred CCcceeeceeeeecCC---CceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEE
Q psy14532 2 HPQLIYKFIQQTLQPG---PPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLI 78 (258)
Q Consensus 2 ~p~~~~~~~~~~~~~g---~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i 78 (258)
.|.|...|.++.+.+| ++++|.|.+.+.|.+.++|+++|..+..... .++ ...+++|.|
T Consensus 1 ~P~f~~~P~~~~~~~~~~g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~-~~~-----------------~~~~g~L~I 62 (94)
T cd05850 1 GPVFEEQPSSLLFPEGSPEEKVTLGCRARASPPATYRWKMNGTEIKFAPE-SRY-----------------TLVAGNLVI 62 (94)
T ss_pred CCeeEECCCCEEecCCCCCCeEEEEeEceeCCCCEEEEEECCEECccCCC-ceE-----------------EEECCeEEE
Confidence 3778888888877666 5799999999999999999999988753311 111 113568999
Q ss_pred eecccCCCceEEEEEEEeCCcceeeceEEEE
Q psy14532 79 ENVQKDHDRGVYWCTATNKQGRSSSQNVHIS 109 (258)
Q Consensus 79 ~~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~ 109 (258)
.++....|+|.|.|.+.|..|...+..+.|.
T Consensus 63 ~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l~ 93 (94)
T cd05850 63 NNPQKARDAGSYQCLAINRCGTVVSREANLR 93 (94)
T ss_pred ccCCccCcCEEEEEEEEcCcCcEEEEEEEEe
Confidence 8862468999999999999998776666553
No 29
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.63 E-value=6.5e-15 Score=93.77 Aligned_cols=94 Identities=33% Similarity=0.672 Sum_probs=69.4
Q ss_pred CCcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEE---
Q psy14532 2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLI--- 78 (258)
Q Consensus 2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i--- 78 (258)
||.|...+.++.+.+|+++.|.|.+.+.|.+.+.|+|+|..+......... +.....++.+.+
T Consensus 1 ~P~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~--------------~~~~~~~~~~~~~~i 66 (100)
T cd07693 1 PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRS--------------HRIVLPSGSLFFLRV 66 (100)
T ss_pred CCeEEecCceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCc--------------ceEEecCCcEEEEEe
Confidence 689999999999999999999999999999999999999887652110000 011122333322
Q ss_pred --eecccCCCceEEEEEEEeCCcceeeceEEEEE
Q psy14532 79 --ENVQKDHDRGVYWCTATNKQGRSSSQNVHISV 110 (258)
Q Consensus 79 --~~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 110 (258)
.++ ..+|+|.|+|.+.|..|...+..+.|.|
T Consensus 67 ~~~~~-~~~D~G~Y~C~a~N~~G~~~s~~~~l~v 99 (100)
T cd07693 67 VHGRK-GRSDEGVYVCVAHNSLGEAVSRNASLEV 99 (100)
T ss_pred eccCC-CcCcCEEEEEEEEccccceecceEEEEe
Confidence 223 5789999999999999986657777765
No 30
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.63 E-value=8.9e-15 Score=90.40 Aligned_cols=85 Identities=25% Similarity=0.459 Sum_probs=66.3
Q ss_pred ceeeceeeeecCCCceEEEEEEeecCCCeEEEeeC-CEeCcCCccccceecccceeeccccccceeeeeC---CcEEEee
Q psy14532 5 LIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLD-GYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPN---GTLLIEN 80 (258)
Q Consensus 5 ~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~i~~ 80 (258)
+...+.++.+.+|+++.|.|.+.|.|. .+.|+++ +..+... .++. +..+ .+|.|.+
T Consensus 3 ~~~~~~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~---~r~~----------------~~~~g~~~~L~I~~ 62 (92)
T cd05866 3 VSISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSS---QRVV----------------VQKEGVRSRLTIYN 62 (92)
T ss_pred EEEEecceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCC---CCEE----------------EEeCCCeeEEEEec
Confidence 456788899999999999999999887 8999984 6555432 1111 1122 3799999
Q ss_pred cccCCCceEEEEEEEeCCcceeeceEEEEE
Q psy14532 81 VQKDHDRGVYWCTATNKQGRSSSQNVHISV 110 (258)
Q Consensus 81 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 110 (258)
+ ..+|+|.|+|.+.|..|....+++.|.+
T Consensus 63 v-~~~D~G~Y~C~A~N~~G~~~~~~i~l~~ 91 (92)
T cd05866 63 A-NIEDAGIYRCQATDAKGQTQEATVVLEI 91 (92)
T ss_pred C-ChHHCEEEEEEEEcCCCcEEEEEEEEEE
Confidence 9 9999999999999999887657777765
No 31
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.63 E-value=5.8e-15 Score=91.42 Aligned_cols=87 Identities=29% Similarity=0.417 Sum_probs=68.3
Q ss_pred Ccce--eeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEee
Q psy14532 3 PQLI--YKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIEN 80 (258)
Q Consensus 3 p~~~--~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~ 80 (258)
|.|. ..+.++.+.+|++++|.|.+.+. .+.+.|+|++..+... +..+ ...+++|.|.+
T Consensus 2 p~~~~~~~~~~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~~----~~~~---------------~~~~~~L~I~~ 61 (91)
T cd05740 2 PVINSNNSVGNQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVPP----RLQL---------------SNDNRTLTFNN 61 (91)
T ss_pred CEeecccccCccccccCCcEEEEEEeCCC-CCEEEEEECCEECCCC----CEEE---------------eCCCCEEEECc
Confidence 5553 34456789999999999999999 8999999998876432 1111 11245799999
Q ss_pred cccCCCceEEEEEEEeCCcceeeceEEEEE
Q psy14532 81 VQKDHDRGVYWCTATNKQGRSSSQNVHISV 110 (258)
Q Consensus 81 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 110 (258)
+ +.+|+|.|.|.+.|..|...+..+.|.|
T Consensus 62 v-~~~D~G~Y~C~a~N~~G~~~S~~~~L~V 90 (91)
T cd05740 62 V-TRSDTGHYQCEASNEVSNMTSDPYILNV 90 (91)
T ss_pred C-ChhhCEEEEEEEEcCCCCEEeeeEEEEe
Confidence 9 9999999999999999987767777776
No 32
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.63 E-value=2.4e-15 Score=89.04 Aligned_cols=72 Identities=31% Similarity=0.574 Sum_probs=61.1
Q ss_pred CCcEEEEeeeCcccCceEEEEeCCcccCCCcceEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEE
Q psy14532 127 GEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHIS 200 (258)
Q Consensus 127 g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~ 200 (258)
|+.+.|.|.+.|.|.|.++|++++..+....++.+..+++|.|.++.. +|.|.|+|.|.|..|+ ......|.
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~r~~~~~~g~L~I~~v~~-~D~G~Y~C~A~N~~G~-~~~~~~l~ 72 (73)
T cd05852 1 GGRVIIECKPKAAPKPKFSWSKGTELLVNNSRISIWDDGSLEILNITK-LDEGSYTCFAENNRGK-ANSTGVLS 72 (73)
T ss_pred CCeEEEEEecceeCCCEEEEEeCCEecccCCCEEEcCCCEEEECcCCh-hHCEEEEEEEECCCCc-eeEEEEEE
Confidence 678999999999999999999999877766777777888999999997 9999999999999884 33444443
No 33
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.63 E-value=8.4e-15 Score=91.43 Aligned_cols=91 Identities=22% Similarity=0.327 Sum_probs=65.5
Q ss_pred ceeeceeeeecCCCceEEEEEEeecCC-CeEEEee-CCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecc
Q psy14532 5 LIYKFIQQTLQPGPPVSLKCIATGNPT-PHISWKL-DGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQ 82 (258)
Q Consensus 5 ~~~~~~~~~~~~g~~v~l~C~~~~~~~-~~v~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~ 82 (258)
+...|.+..+.+|+++.|.|.+.|.|. +.+.|++ ++..+.... .++.+.. .....++|.|.++
T Consensus 3 ~~~~p~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~--~r~~v~~------------~~~~~~~L~I~~v- 67 (96)
T cd05865 3 VDIVPSQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQ--QRISVVR------------NDDYSSTLTIYNA- 67 (96)
T ss_pred EEEeCCccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccC--CeEEEEe------------CCCCceEEEEecc-
Confidence 456777888999999999999999985 6999998 676554321 1111100 0001257999999
Q ss_pred cCCCceEEEEEEEeCCcceeeceEEEEE
Q psy14532 83 KDHDRGVYWCTATNKQGRSSSQNVHISV 110 (258)
Q Consensus 83 ~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 110 (258)
+.+|+|.|+|.|.|..+.....++.|.|
T Consensus 68 ~~~D~G~YtC~A~N~~~g~~~~s~~l~v 95 (96)
T cd05865 68 NIDDAGIYKCVVSNEDEGESEATVNVKI 95 (96)
T ss_pred ChhhCEEEEEEEEcCCCCcEEEEEEEEE
Confidence 9999999999999997444337777776
No 34
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.63 E-value=4.2e-15 Score=85.82 Aligned_cols=65 Identities=22% Similarity=0.417 Sum_probs=53.7
Q ss_pred eEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEEEEEEeCCc
Q psy14532 20 VSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQG 99 (258)
Q Consensus 20 v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~~~~~~~ 99 (258)
+.|.|.+.|.|.|.++|+|+|..+... ...+.|.|.++ ..+|+|.|+|.+.|..|
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~------------------------~~~~~L~i~~v-~~~D~G~YtC~a~N~~g 55 (67)
T cd05863 1 VKLPVKVAAYPPPEFQWYKDGKLISGK------------------------HSQHSLQIKDV-TEASAGTYTLVLWNSAA 55 (67)
T ss_pred CEEEEEEEEeCCCEEEEEECCEECccc------------------------CCcCEEEECCC-CHHHCEEEEEEEEECCc
Confidence 579999999999999999999888532 02458999999 99999999999999988
Q ss_pred ceeeceEEEEE
Q psy14532 100 RSSSQNVHISV 110 (258)
Q Consensus 100 ~~~~~~~~l~v 110 (258)
... ..+.+.+
T Consensus 56 ~~~-~~~~~~l 65 (67)
T cd05863 56 GLE-KRISLEL 65 (67)
T ss_pred cEE-EEEEEEE
Confidence 765 5555554
No 35
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.62 E-value=6.8e-15 Score=91.41 Aligned_cols=86 Identities=20% Similarity=0.432 Sum_probs=65.8
Q ss_pred eeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCC
Q psy14532 6 IYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDH 85 (258)
Q Consensus 6 ~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~ 85 (258)
...+.+..+.+|+++.|.|.+.|.|.|.+.|++++..+..... ... .......+|.|.++ ..+
T Consensus 4 v~~p~~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~---~~~-------------~~~~~~~~L~I~~v-~~~ 66 (90)
T cd04972 4 VDGPNATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRT---DTL-------------ETTVDIYNLQLSNI-TSE 66 (90)
T ss_pred ccCCcCEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCCcc---EEE-------------EecCCEEEEEEecC-Ccc
Confidence 4556677799999999999999999999999999987643311 000 01112347999999 999
Q ss_pred CceEEEEEEEeCCcceeeceEEEE
Q psy14532 86 DRGVYWCTATNKQGRSSSQNVHIS 109 (258)
Q Consensus 86 d~G~Y~C~~~~~~~~~~~~~~~l~ 109 (258)
|.|.|+|.+.|..|... ..+.|.
T Consensus 67 D~g~Y~C~A~N~~G~~~-~~~~L~ 89 (90)
T cd04972 67 TQTTVTCTAENPVGQAN-VSVQVT 89 (90)
T ss_pred cCEEEEEEEECCCCcee-EEEEEe
Confidence 99999999999998876 666654
No 36
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.62 E-value=7e-15 Score=88.07 Aligned_cols=75 Identities=31% Similarity=0.593 Sum_probs=59.2
Q ss_pred CCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEEEEEEe
Q psy14532 17 GPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATN 96 (258)
Q Consensus 17 g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~~~~ 96 (258)
|+++.|.|.+.|.|.|+|.|+|+|.++........ .....+.|.|.++ +..|+|.|+|.+.|
T Consensus 1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~-----------------~~~~~~~l~i~~v-~~~D~G~Y~C~A~N 62 (76)
T cd05868 1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPS-----------------RKVDGDTIIFSKV-QERSSAVYQCNASN 62 (76)
T ss_pred CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCce-----------------EEecCCEEEECCC-CHhhCEEEEEEEEc
Confidence 78999999999999999999999988753311000 0112457889999 99999999999999
Q ss_pred CCcceeeceEEEEE
Q psy14532 97 KQGRSSSQNVHISV 110 (258)
Q Consensus 97 ~~~~~~~~~~~l~v 110 (258)
..|... .++.|.|
T Consensus 63 ~~G~~~-~~~~l~v 75 (76)
T cd05868 63 EYGYLL-ANAFVNV 75 (76)
T ss_pred CCCEEE-EEEEEEe
Confidence 999887 7777766
No 37
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.62 E-value=6.7e-15 Score=92.93 Aligned_cols=93 Identities=25% Similarity=0.510 Sum_probs=66.4
Q ss_pred CCcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeC--CEeCcCCc--cccceecccceeeccccccceeeeeCCcEE
Q psy14532 2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLD--GYPLAGDR--HENKNRIGEARVQQLPLNRRQKVFPNGTLL 77 (258)
Q Consensus 2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~--~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 77 (258)
+|.|. .+.+..+.+|++++|.|.+.|.|.|.+.|+|. +..+.... ...++.+. .....++|.
T Consensus 2 ~p~i~-~~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~-------------~~~~~~~L~ 67 (98)
T cd05870 2 QPHII-QLKNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVK-------------GQHGESSLH 67 (98)
T ss_pred CCEEE-eeccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEe-------------ecCCeeEEE
Confidence 57775 47789999999999999999999999999994 33322110 00111110 001235799
Q ss_pred EeecccCCCceEEEEEEEeCCcceeeceEEEEE
Q psy14532 78 IENVQKDHDRGVYWCTATNKQGRSSSQNVHISV 110 (258)
Q Consensus 78 i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 110 (258)
|.++ +.+|+|.|+|.+.|..|... .++.|.|
T Consensus 68 I~~v-~~~D~G~Y~C~A~N~~G~~~-~~~~l~~ 98 (98)
T cd05870 68 IKDV-KLSDSGRYDCEAASRIGGHQ-KSMYLDI 98 (98)
T ss_pred EeeC-CcCCCEEEEEEEeccCCcce-eEEEEeC
Confidence 9999 99999999999999999776 6666653
No 38
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.62 E-value=6e-15 Score=92.01 Aligned_cols=84 Identities=26% Similarity=0.402 Sum_probs=63.2
Q ss_pred ceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCce
Q psy14532 9 FIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRG 88 (258)
Q Consensus 9 ~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G 88 (258)
|..+.+.+|+++.|.|.+.+.|.|.+.|+|++..+... .++.+.. ......+|.|.++ ..+|+|
T Consensus 8 p~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~---~~~~~~~------------~~~~~~~L~I~~v-~~~D~G 71 (92)
T cd05737 8 PDVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALS---DHYNVKV------------EQGKYASLTIKGV-SSEDSG 71 (92)
T ss_pred CceEEEeCCCcEEEEEEEEecCCCeEEEEECCEECccC---CCEEEEE------------cCCCEEEEEEccC-ChhhCE
Confidence 45578899999999999999999999999999887543 1111110 0001236999999 999999
Q ss_pred EEEEEEEeCCcceeeceEEEE
Q psy14532 89 VYWCTATNKQGRSSSQNVHIS 109 (258)
Q Consensus 89 ~Y~C~~~~~~~~~~~~~~~l~ 109 (258)
.|+|.+.|..|... ..+.|.
T Consensus 72 ~Y~C~a~N~~G~~~-~~~~v~ 91 (92)
T cd05737 72 KYGIVVKNKYGGET-VDVTVS 91 (92)
T ss_pred EEEEEEEECCCcce-EEEEEe
Confidence 99999999988776 555554
No 39
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.62 E-value=9.9e-15 Score=90.11 Aligned_cols=83 Identities=33% Similarity=0.637 Sum_probs=64.9
Q ss_pred eceeeeecCCCceEEEEEE-eecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCC
Q psy14532 8 KFIQQTLQPGPPVSLKCIA-TGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHD 86 (258)
Q Consensus 8 ~~~~~~~~~g~~v~l~C~~-~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d 86 (258)
.|.+..+.+|+++.|.|.+ .+.|.+.+.|+|++..+.... .+ .....+++|.|.++ +.+|
T Consensus 2 ~p~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~--~~----------------~~~~~~~~L~I~~~-~~~D 62 (86)
T cd05724 2 EPSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDN--ER----------------VRIVDDGNLLIAEA-RKSD 62 (86)
T ss_pred CCccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCC--CC----------------EEEccCCEEEEeEC-Cccc
Confidence 4567888999999999998 678899999999988765431 11 11223568999999 9999
Q ss_pred ceEEEEEEEeCCcceeeceEEEE
Q psy14532 87 RGVYWCTATNKQGRSSSQNVHIS 109 (258)
Q Consensus 87 ~G~Y~C~~~~~~~~~~~~~~~l~ 109 (258)
+|.|+|.+.|..|...+..+.|.
T Consensus 63 ~G~Y~C~a~N~~G~~~s~~~~l~ 85 (86)
T cd05724 63 EGTYKCVATNMVGERESAAARLS 85 (86)
T ss_pred CEEEEEEEEeccCceeeeeEEEE
Confidence 99999999999887665666554
No 40
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.61 E-value=1.3e-14 Score=90.26 Aligned_cols=89 Identities=26% Similarity=0.447 Sum_probs=67.1
Q ss_pred CCcceeeceeeeecCCC---ceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEE
Q psy14532 2 HPQLIYKFIQQTLQPGP---PVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLI 78 (258)
Q Consensus 2 ~p~~~~~~~~~~~~~g~---~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i 78 (258)
+|.|...|.++.+.++. .+.|.|.+.|.|.+.+.|+|++..+.... .++ ...++.|.|
T Consensus 1 ~P~f~~~P~~~~~~~~~~~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~--~~~-----------------~~~~g~L~I 61 (93)
T cd05849 1 GPVFEEQPIDTIYPEESTEGKVSVNCRARANPFPIYKWRKNNLDIDLTN--DRY-----------------SMVGGNLVI 61 (93)
T ss_pred CCEEEECCCCEEecCCccCCeEEEeCcCccCCCCEEEEEECCEEccCCC--CeE-----------------EEECCEEEE
Confidence 47788888877665544 89999999999999999999988764321 111 123578999
Q ss_pred eecccCCCceEEEEEEEeCCcceeeceEEEE
Q psy14532 79 ENVQKDHDRGVYWCTATNKQGRSSSQNVHIS 109 (258)
Q Consensus 79 ~~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~ 109 (258)
.++....|+|.|.|.+.|..|...+..++|.
T Consensus 62 ~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l~ 92 (93)
T cd05849 62 NNPDKYKDAGRYVCIVSNIYGKVRSREATLS 92 (93)
T ss_pred CcCCcCCCCEEEEEEEEeCcceEEEccEEEe
Confidence 8872368999999999999998765666553
No 41
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.61 E-value=9.8e-15 Score=92.00 Aligned_cols=94 Identities=24% Similarity=0.512 Sum_probs=68.9
Q ss_pred CCcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCcc--ccceecccceeeccccccceeeeeCCcEEEe
Q psy14532 2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRH--ENKNRIGEARVQQLPLNRRQKVFPNGTLLIE 79 (258)
Q Consensus 2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~ 79 (258)
+|.|...+....+..|++++|.|.+.|.|.|.++|++++..+..... ..++.+. .....++|.|.
T Consensus 2 ~p~i~~~~~~~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~-------------~~~~~~~L~I~ 68 (97)
T cd05869 2 KPKITYVENQTAMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVR-------------SHARVSSLTLK 68 (97)
T ss_pred CceEEEccCceEEEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEE-------------cCccEEEEEEe
Confidence 58887777766677799999999999999999999998776543210 0111100 00112479999
Q ss_pred ecccCCCceEEEEEEEeCCcceeeceEEEEE
Q psy14532 80 NVQKDHDRGVYWCTATNKQGRSSSQNVHISV 110 (258)
Q Consensus 80 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 110 (258)
++ +.+|+|.|+|.+.|..|... ..+.|.|
T Consensus 69 ~v-~~~D~G~Y~C~A~N~~G~~~-~~~~l~v 97 (97)
T cd05869 69 YI-QYTDAGEYLCTASNTIGQDS-QSMYLEV 97 (97)
T ss_pred cC-ccCcCEEEEEEEecCCCCee-EEEEEEC
Confidence 99 99999999999999999877 6666654
No 42
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.61 E-value=1.5e-14 Score=90.87 Aligned_cols=89 Identities=36% Similarity=0.623 Sum_probs=67.6
Q ss_pred ceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecc--
Q psy14532 5 LIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQ-- 82 (258)
Q Consensus 5 ~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-- 82 (258)
|...|.+..+.+|+++.|.|.+.+.|.+.+.|+|+|..+..... . +..+..+++|.|.++.
T Consensus 2 f~~~P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~-~----------------~~~~~~~~~l~i~~v~~~ 64 (95)
T cd05722 2 FLSEPSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSD-E----------------RRQQLPNGSLLITSVVHS 64 (95)
T ss_pred cEECCCCeEEcCCCCEEEeeecccCCCCEEEEEECCeECccccC-c----------------ceEEccCCeEEEeeeecc
Confidence 45677888899999999999999999999999999988764311 0 0112245667777652
Q ss_pred --cCCCceEEEEEEEeC-CcceeeceEEEEE
Q psy14532 83 --KDHDRGVYWCTATNK-QGRSSSQNVHISV 110 (258)
Q Consensus 83 --~~~d~G~Y~C~~~~~-~~~~~~~~~~l~v 110 (258)
...|.|.|.|.+.|. .|...+..+.|.|
T Consensus 65 ~~~~~D~G~Y~C~a~N~~~G~~~s~~~~l~v 95 (95)
T cd05722 65 KHNKPDEGFYQCVAQNDSLGSIVSRTARLTV 95 (95)
T ss_pred CCCCCcCEEEEEEEECCccCcEEEeeeEEeC
Confidence 368999999999999 8877667776654
No 43
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.60 E-value=1.8e-14 Score=88.16 Aligned_cols=83 Identities=29% Similarity=0.506 Sum_probs=61.8
Q ss_pred CceEEEEEEeecCCC--eEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEEEEEE
Q psy14532 18 PPVSLKCIATGNPTP--HISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTAT 95 (258)
Q Consensus 18 ~~v~l~C~~~~~~~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~~~ 95 (258)
+.+.|.|.+.+.|.+ .+.|++++..+.......++... ......++|.|.++ +..|+|.|+|.|.
T Consensus 1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~------------~~~~~~~~L~I~~v-~~~D~G~YtC~A~ 67 (85)
T cd05854 1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRM------------EVKETIGDLVIVNA-QLSHAGTYTCTAQ 67 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEE------------EecceEeEEEEccC-ChhhCeEEEEEEe
Confidence 478999999998876 68999999887543211111100 01112468999999 9999999999999
Q ss_pred eCCcceeeceEEEEEecCC
Q psy14532 96 NKQGRSSSQNVHISVTGAP 114 (258)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~ 114 (258)
+..|... ..+.|.|..+|
T Consensus 68 n~~g~~~-~~~~L~V~~~P 85 (85)
T cd05854 68 TVVDSAS-ASATLVVRGPP 85 (85)
T ss_pred cCCCCEE-EEEEEEEECCC
Confidence 9998887 88899988764
No 44
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.60 E-value=1e-14 Score=86.61 Aligned_cols=75 Identities=28% Similarity=0.436 Sum_probs=55.4
Q ss_pred eEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEEEEEEeCCc
Q psy14532 20 VSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQG 99 (258)
Q Consensus 20 v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~~~~~~~ 99 (258)
|.|.|.+.|.|.|.+.|+|++..+.... .++.+... .....+|.|.++ ..+|+|.|+|.+.|..|
T Consensus 1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~--~r~~~~~~------------~~g~~~L~I~~~-~~~D~G~Y~C~A~N~~G 65 (75)
T cd05892 1 VKLECQISAIPPPKIFWKRNNEMVQYNT--DRISLYQD------------NSGRVTLLIKNV-NKKDAGWYTVSAVNEAG 65 (75)
T ss_pred CEEEEEEEecCCCeEEEEECCEECcCCC--CeEEEEEc------------CCCcEEEEECCC-ChhhCEEEEEEEEcCcC
Confidence 5799999999999999999998876431 12211100 001127999999 99999999999999999
Q ss_pred ceeeceEEEEE
Q psy14532 100 RSSSQNVHISV 110 (258)
Q Consensus 100 ~~~~~~~~l~v 110 (258)
... ..+.|.|
T Consensus 66 ~~~-~~a~L~V 75 (75)
T cd05892 66 VAT-CHARLDV 75 (75)
T ss_pred eEE-EEEEEeC
Confidence 877 6666654
No 45
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=99.60 E-value=2.4e-14 Score=96.54 Aligned_cols=114 Identities=24% Similarity=0.458 Sum_probs=79.0
Q ss_pred CcEEEeecccCCCceEEEEEEEeCCcceeeceEEEEEecCCeeccCC-CcceecCCcEEEEeeeCcc-cC-ceEEEEeCC
Q psy14532 74 GTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMG-NVSAIAGEPLYLGCPVAGY-PI-ESITWQKGV 150 (258)
Q Consensus 74 ~~l~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~-~~~~~~g~~~~l~C~~~~~-~~-~~i~W~~~~ 150 (258)
++|.|.++ +..|+|.|.|.+.+..+... ..+.|.|..+|.+.... ......|+.+.|.|.+.+. |. +.|.|++++
T Consensus 1 asL~i~~v-~~~D~G~Y~C~~~~~~~~~~-~~~~l~v~~~P~v~~~~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g 78 (139)
T cd05771 1 ASLTLPGL-TVHDEGTYICSVSTPPHQAQ-QIIQLSVSEPPRVRLSLEKLVSMIEEPQTLICHIAGYYPLDVQVEWTREP 78 (139)
T ss_pred CeEEECCC-CHHHCEEEEEEEEccCccee-eEEEEEEecCCceEEeCCCceeecCCcEEEEEEECCCCCCCeEEEEEECC
Confidence 36899999 99999999999998777665 88899998887664432 2333478899999999884 54 589999987
Q ss_pred cccCC-----Cc----ceEEecCCe------EEEEecccCCCCcEEEEEEEeCCC
Q psy14532 151 QQLPL-----NR----RQKVFPNGT------LLIENVQKDHDRGVYWCTATNKQG 190 (258)
Q Consensus 151 ~~~~~-----~~----~~~~~~~~~------l~i~~~~~~~~~g~y~C~~~~~~~ 190 (258)
..... .. ......+++ |.+..... ++...|+|.+.+...
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~-~~g~~ytC~V~H~~l 132 (139)
T cd05771 79 PGDSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTE-DAGATYTCRVSHVSL 132 (139)
T ss_pred CCCccceeccCCeEecceEeCCCCCEEEEEEEEecCCcc-CCCCEEEEEEEcCCC
Confidence 54221 11 112233444 34433322 456799999998643
No 46
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.60 E-value=1.8e-14 Score=88.90 Aligned_cols=81 Identities=27% Similarity=0.532 Sum_probs=64.7
Q ss_pred cCCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcceEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceE
Q psy14532 118 PMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNV 197 (258)
Q Consensus 118 ~~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~ 197 (258)
.+.+..+.+|+.+.|.|.+.|.|.|.++|++++..+....+.. ..++.|.|.++.. +|.|.|+|.|.|..|. ....+
T Consensus 7 ~~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~-~~~~~L~I~~v~~-~D~G~Y~C~A~N~~G~-~~~~~ 83 (88)
T cd05851 7 KFKDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPATAEIS-MSGAVLKIFNIQP-EDEGTYECEAENIKGK-DKHQA 83 (88)
T ss_pred ccccEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCCCCEEe-cCCCEEEECcCCh-hhCEEEEEEEEcCCCc-eEEEE
Confidence 3556778899999999999999999999999988776544333 2456899999997 9999999999999985 44555
Q ss_pred EEEe
Q psy14532 198 HISV 201 (258)
Q Consensus 198 ~l~v 201 (258)
.|.|
T Consensus 84 ~l~V 87 (88)
T cd05851 84 RVYV 87 (88)
T ss_pred EEEE
Confidence 5544
No 47
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.59 E-value=1.1e-14 Score=91.75 Aligned_cols=81 Identities=22% Similarity=0.265 Sum_probs=64.7
Q ss_pred CCcceecCCcEEEEeeeCc-ccCceEEEEeCCcccCCCcceEEec--------CCeEEEEecccCCCCcEEEEEEEeCCC
Q psy14532 120 GNVSAIAGEPLYLGCPVAG-YPIESITWQKGVQQLPLNRRQKVFP--------NGTLLIENVQKDHDRGVYWCTATNKQG 190 (258)
Q Consensus 120 ~~~~~~~g~~~~l~C~~~~-~~~~~i~W~~~~~~~~~~~~~~~~~--------~~~l~i~~~~~~~~~g~y~C~~~~~~~ 190 (258)
....+.+|+.+.|.|.+.| .|+|.+.|+|++..+.......... ...|.|.++.. +|+|.|+|.|.|..|
T Consensus 11 ~~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~-~D~G~Ytc~A~N~~G 89 (101)
T cd04975 11 TTIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKE-SEAGTYTFLASNSDA 89 (101)
T ss_pred ceEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCH-hhCeeEEEEEECCCc
Confidence 4567889999999999999 8899999999999887544332221 25799999997 999999999999998
Q ss_pred CCccceEEEEee
Q psy14532 191 RSSSQNVHISVT 202 (258)
Q Consensus 191 ~~~~~~~~l~v~ 202 (258)
..+..+.|.|.
T Consensus 90 -~~~~t~~L~V~ 100 (101)
T cd04975 90 -SKSLTFELYVN 100 (101)
T ss_pred -cEEEEEEEEEE
Confidence 45566666664
No 48
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.59 E-value=1.5e-14 Score=91.26 Aligned_cols=93 Identities=24% Similarity=0.440 Sum_probs=68.1
Q ss_pred CCcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCcc--ccceecccceeeccccccceeeeeCCcEEEe
Q psy14532 2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRH--ENKNRIGEARVQQLPLNRRQKVFPNGTLLIE 79 (258)
Q Consensus 2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~ 79 (258)
+|+|. .+.+..+.+|+++.|.|.+.+.|.+.+.|++++..+..... ..++.+. .....++|.|.
T Consensus 2 ~P~i~-~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~L~I~ 67 (96)
T cd05732 2 QPKIT-YLENQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVR-------------GHARVSSLTLK 67 (96)
T ss_pred Cccce-ecCceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEe-------------CCccEEEEEEC
Confidence 68885 56678899999999999999999999999998755432210 0011100 00123479999
Q ss_pred ecccCCCceEEEEEEEeCCcceeeceEEEEE
Q psy14532 80 NVQKDHDRGVYWCTATNKQGRSSSQNVHISV 110 (258)
Q Consensus 80 ~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 110 (258)
++ +.+|+|.|.|.+.|..|... .++.|.|
T Consensus 68 ~v-~~~D~G~Y~C~a~N~~G~~~-~s~~l~v 96 (96)
T cd05732 68 DV-QLTDAGRYDCEASNRIGGDQ-QSMYLEV 96 (96)
T ss_pred cC-CcCcCEEeEEEEEeCCCCcE-EEEEEeC
Confidence 99 99999999999999999876 6666653
No 49
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.59 E-value=1.4e-14 Score=87.52 Aligned_cols=78 Identities=23% Similarity=0.527 Sum_probs=59.6
Q ss_pred ceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCce
Q psy14532 9 FIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRG 88 (258)
Q Consensus 9 ~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G 88 (258)
|.+..+.+|++++|.|.+.+. .+.+.|+|+|.++... .+..+ ...+|.|.++ +.+|+|
T Consensus 1 ~~~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~---~~~~~-----------------~~~~L~I~~~-~~~DsG 58 (79)
T cd04973 1 VESYSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGEN---NRTRI-----------------TGEEVQIKDA-VPRDSG 58 (79)
T ss_pred CCcEEecCCCCEEEEEEecCC-CceEEEeeCCcCCCCC---ceEEE-----------------eCCEEEECCC-ChhhCE
Confidence 456778999999999999885 5689999999877543 11111 2457999999 999999
Q ss_pred EEEEEEEeCCcceeeceEEEE
Q psy14532 89 VYWCTATNKQGRSSSQNVHIS 109 (258)
Q Consensus 89 ~Y~C~~~~~~~~~~~~~~~l~ 109 (258)
.|+|.+.+..|... ..+.|.
T Consensus 59 ~Y~C~a~n~~g~~~-~~~~v~ 78 (79)
T cd04973 59 LYACVTSSPSGSDT-TYFSVN 78 (79)
T ss_pred EEEEEEeCCCCccc-EEEEEe
Confidence 99999999877654 444443
No 50
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.58 E-value=2e-14 Score=88.44 Aligned_cols=82 Identities=26% Similarity=0.541 Sum_probs=62.6
Q ss_pred eeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEE
Q psy14532 12 QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYW 91 (258)
Q Consensus 12 ~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~ 91 (258)
+.+.+|+++.|.|.+.+.|.+.+.|+|++..+........+.. .....+|.|.++ ..+|+|.|+
T Consensus 4 ~~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~---------------~~~~~~l~i~~~-~~~D~G~Y~ 67 (85)
T cd05857 4 HAVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKV---------------RNQHWSLIMESV-VPSDKGNYT 67 (85)
T ss_pred EEcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeEE---------------eCCceEEEEccC-CcccCEEEE
Confidence 4578999999999999999999999999988764311111100 112457899999 999999999
Q ss_pred EEEEeCCcceeeceEEEEE
Q psy14532 92 CTATNKQGRSSSQNVHISV 110 (258)
Q Consensus 92 C~~~~~~~~~~~~~~~l~v 110 (258)
|.+.|..|... ..+.|.|
T Consensus 68 C~a~N~~G~~~-~~~~l~v 85 (85)
T cd05857 68 CVVENEYGSIN-HTYHLDV 85 (85)
T ss_pred EEEEeCCCEEE-EEEEEEC
Confidence 99999999876 6666654
No 51
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.58 E-value=3.2e-14 Score=84.08 Aligned_cols=71 Identities=25% Similarity=0.512 Sum_probs=56.3
Q ss_pred ceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEEEEEEeCC
Q psy14532 19 PVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQ 98 (258)
Q Consensus 19 ~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~~~~~~ 98 (258)
++.|.|.+.|.|.|.++|+|++..+... .++ .+..++.|.|.++ +.+|+|.|+|.+.|..
T Consensus 1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~---~~~----------------~~~~~~~l~i~~v-~~~D~G~Y~C~A~N~~ 60 (71)
T cd05723 1 DVIFECEVTGKPTPTVKWVKNGDMVIPS---DYF----------------KIVKEHNLQVLGL-VKSDEGFYQCIAENDV 60 (71)
T ss_pred CEEEEEEEEEeCCCEEEEEECCeECCCC---CCE----------------EEEecCCEEEEcC-CcccCEEEEEEEEcCC
Confidence 4899999999999999999998876543 111 1223567899999 9999999999999999
Q ss_pred cceeeceEEEEE
Q psy14532 99 GRSSSQNVHISV 110 (258)
Q Consensus 99 ~~~~~~~~~l~v 110 (258)
|... ..+.|.|
T Consensus 61 G~~~-~~~~L~V 71 (71)
T cd05723 61 GNVQ-ASAQLII 71 (71)
T ss_pred CEEE-EEEEEEC
Confidence 9877 6666653
No 52
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.58 E-value=2.8e-14 Score=86.33 Aligned_cols=83 Identities=17% Similarity=0.331 Sum_probs=62.1
Q ss_pred CceEEEEEEeec--CCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEEEEEE
Q psy14532 18 PPVSLKCIATGN--PTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTAT 95 (258)
Q Consensus 18 ~~v~l~C~~~~~--~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~~~ 95 (258)
+++.|.|.+.+. +.+.|.|+++|+++.......++... .....+++|.|.++ +..|+|.|+|.+.
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~------------~~~~~~~~L~I~nv-~~~dsG~YtC~a~ 67 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERV------------GGQDSAGDLMIRSI-QLKHAGKYVCMVQ 67 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEe------------ccCCCCCcEEEecC-CHHHCEEEEEEEE
Confidence 578999999874 46689999999998632111121110 00123568999999 9999999999999
Q ss_pred eCCcceeeceEEEEEecCC
Q psy14532 96 NKQGRSSSQNVHISVTGAP 114 (258)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~ 114 (258)
+..+... .+..|.|..+|
T Consensus 68 n~~~~~~-a~a~L~V~~pP 85 (85)
T cd05853 68 TSVDKLS-AAADLIVRGPP 85 (85)
T ss_pred cccCceE-EEEEEEEecCC
Confidence 9998887 88899998775
No 53
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.58 E-value=3e-14 Score=85.71 Aligned_cols=75 Identities=35% Similarity=0.666 Sum_probs=60.0
Q ss_pred CCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEEEEEEe
Q psy14532 17 GPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATN 96 (258)
Q Consensus 17 g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~~~~ 96 (258)
|+++.|.|.+.+.|.|.+.|++++..+....... ......+.|.|.++ +..|+|.|+|.+.|
T Consensus 1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~~-----------------~~~~~~~~L~i~~v-~~~D~G~Y~C~A~N 62 (76)
T cd04978 1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDP-----------------RRRVDGGTLILSNV-QPNDTAVYQCNASN 62 (76)
T ss_pred CCeEEEEEEceeeCCCEEEEEECCEECCCCCCcc-----------------eEEccCCEEEECCC-ChhhCEEEEEEEEc
Confidence 7899999999999999999999998776542110 11223568999999 99999999999999
Q ss_pred CCcceeeceEEEEE
Q psy14532 97 KQGRSSSQNVHISV 110 (258)
Q Consensus 97 ~~~~~~~~~~~l~v 110 (258)
..|... ..+.|.|
T Consensus 63 ~~G~~~-~~~~l~V 75 (76)
T cd04978 63 VHGYLL-ANAFVHV 75 (76)
T ss_pred cCCeEE-EeEEEEE
Confidence 988876 6777765
No 54
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.57 E-value=2.9e-14 Score=84.91 Aligned_cols=73 Identities=33% Similarity=0.576 Sum_probs=58.4
Q ss_pred CCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEEEEEEe
Q psy14532 17 GPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATN 96 (258)
Q Consensus 17 g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~~~~ 96 (258)
|+++.|.|.+.+.|.+.+.|+|++..+... .++ ....+++|.|.++ +.+|+|.|+|.+.|
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~---~~~----------------~~~~~~~L~i~~v-~~~D~G~Y~C~a~N 60 (73)
T cd04969 1 GGDVIIECKPKAAPKPTISWSKGTELLTNS---SRI----------------CIWPDGSLEILNV-TKSDEGKYTCFAEN 60 (73)
T ss_pred CCeEEEEEeeeEcCCCEEEEEECCEEcccC---CCE----------------EECCCCeEEEccC-ChhHCEEEEEEEEC
Confidence 789999999999999999999998876533 111 1223568999999 99999999999999
Q ss_pred CCcceeeceEEEEE
Q psy14532 97 KQGRSSSQNVHISV 110 (258)
Q Consensus 97 ~~~~~~~~~~~l~v 110 (258)
..|... ..+.|.|
T Consensus 61 ~~G~~~-~~~~l~V 73 (73)
T cd04969 61 FFGKAN-STGSLSV 73 (73)
T ss_pred CCCceE-EEEEEEC
Confidence 998876 6666553
No 55
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.57 E-value=3.9e-14 Score=87.28 Aligned_cols=86 Identities=19% Similarity=0.306 Sum_probs=64.2
Q ss_pred CCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEEEEEEe
Q psy14532 17 GPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATN 96 (258)
Q Consensus 17 g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~~~~ 96 (258)
|+.++|.|.+.+.|.+.+.|+|++..+.... .++.+.... .......+|.|.++ ...|+|.|+|.+.|
T Consensus 1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~--~r~~~~~~~---------~~~~~~s~L~I~~~-~~~D~G~YtC~A~N 68 (88)
T cd05735 1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEM--SRYLVSTKE---------VGDEVISTLQILPT-VREDSGFFSCHAIN 68 (88)
T ss_pred CCeEEEEEEEECCCCCEEEEeeCCEECCCCC--CcEEEEEec---------CCCcEEEEEEECCC-CcccCEEEEEEEEc
Confidence 7899999999999999999999998775431 122211000 00011347999999 99999999999999
Q ss_pred CCcceeeceEEEEEecCCe
Q psy14532 97 KQGRSSSQNVHISVTGAPF 115 (258)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~~ 115 (258)
..|... ..+.|.|..+|.
T Consensus 69 ~~G~~~-~~~~L~V~~~P~ 86 (88)
T cd05735 69 SYGEDR-GIIQLTVQEPPD 86 (88)
T ss_pred CCCcce-EEEEEEEeCCCC
Confidence 999887 888899987653
No 56
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.57 E-value=3.2e-14 Score=84.63 Aligned_cols=75 Identities=28% Similarity=0.461 Sum_probs=55.1
Q ss_pred eEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEEEEEEeCCc
Q psy14532 20 VSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQG 99 (258)
Q Consensus 20 v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~~~~~~~ 99 (258)
|.|.|.+.|.|.|.+.|+|++..+.... .++.+... .....+|.|.++ ..+|+|.|+|.+.|..|
T Consensus 1 v~l~C~v~G~P~P~v~W~k~~~~l~~~~--~~~~~~~~------------~~~~~~L~I~~v-~~~D~G~Y~C~A~N~~G 65 (75)
T cd05893 1 VRLECRVSGVPHPQIFWKKENESLTHNT--DRVSMHQD------------NCGYICLLIQGA-TKEDAGWYTVSAKNEAG 65 (75)
T ss_pred CEEEEEEeEecCCEEEEEECCEECCCCC--CeEEEEEc------------CCCEEEEEECCC-CHHHCEEEEEEEEcCCC
Confidence 5799999999999999999998875431 12211100 000125899999 99999999999999999
Q ss_pred ceeeceEEEEE
Q psy14532 100 RSSSQNVHISV 110 (258)
Q Consensus 100 ~~~~~~~~l~v 110 (258)
... ..+.|.|
T Consensus 66 ~~~-~~a~L~V 75 (75)
T cd05893 66 IVS-CTARLDV 75 (75)
T ss_pred EEE-EEEEEeC
Confidence 877 6666653
No 57
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.57 E-value=2e-14 Score=85.63 Aligned_cols=72 Identities=33% Similarity=0.592 Sum_probs=61.0
Q ss_pred CCcEEEEeeeCcccCceEEEEeCCcccCCCcceEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEE
Q psy14532 127 GEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHIS 200 (258)
Q Consensus 127 g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~ 200 (258)
|+.+.|.|.+.|.|.+.++|++++..+....+..+..++.|.|.++.. +|+|.|+|.+.|..|. ....+.|.
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~L~i~~v~~-~D~G~Y~C~a~N~~G~-~~~~~~l~ 72 (73)
T cd04969 1 GGDVIIECKPKAAPKPTISWSKGTELLTNSSRICIWPDGSLEILNVTK-SDEGKYTCFAENFFGK-ANSTGSLS 72 (73)
T ss_pred CCeEEEEEeeeEcCCCEEEEEECCEEcccCCCEEECCCCeEEEccCCh-hHCEEEEEEEECCCCc-eEEEEEEE
Confidence 678999999999999999999999888766677777778999999998 9999999999999884 44444444
No 58
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.56 E-value=4e-14 Score=87.64 Aligned_cols=79 Identities=29% Similarity=0.437 Sum_probs=65.3
Q ss_pred CCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcceEEe-cCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEE
Q psy14532 120 GNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVF-PNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVH 198 (258)
Q Consensus 120 ~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~ 198 (258)
..+.+.+|+.++|.|.+.|. .|.+.|++++..+.... ..+. ..+.|.|.++.. +|.|.|.|.|.|..|...+..+.
T Consensus 11 ~~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~~~-~~~~~~~~~L~I~~v~~-~D~G~Y~C~a~N~~G~~~S~~~~ 87 (91)
T cd05740 11 GNQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVPPR-LQLSNDNRTLTFNNVTR-SDTGHYQCEASNEVSNMTSDPYI 87 (91)
T ss_pred CccccccCCcEEEEEEeCCC-CCEEEEEECCEECCCCC-EEEeCCCCEEEECcCCh-hhCEEEEEEEEcCCCCEEeeeEE
Confidence 34578899999999999999 99999999988765433 3333 346899999997 99999999999999977777777
Q ss_pred EEe
Q psy14532 199 ISV 201 (258)
Q Consensus 199 l~v 201 (258)
|.|
T Consensus 88 L~V 90 (91)
T cd05740 88 LNV 90 (91)
T ss_pred EEe
Confidence 766
No 59
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.56 E-value=7.3e-14 Score=88.09 Aligned_cols=89 Identities=18% Similarity=0.211 Sum_probs=65.7
Q ss_pred eeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEE
Q psy14532 11 QQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVY 90 (258)
Q Consensus 11 ~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y 90 (258)
...+..|+.+.|.|.+.|.|.|.+.|+|+|.++..... ....... .........+|.|.++ ..+|+|.|
T Consensus 12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~--~~~~~~~--------~~~~~~~~s~L~I~~v-~~~D~G~Y 80 (101)
T cd05859 12 LEFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLT--EITTSEH--------NVQETRYVSKLKLIRA-KEEDSGLY 80 (101)
T ss_pred eEEEecCCcEEEEEEEEEeCCCceEEEECCEECcCCcc--eEEeccc--------cccceeeccEEEEeeC-CHHHCEEE
Confidence 46688999999999999999999999999998875421 1100000 0000112357999999 99999999
Q ss_pred EEEEEeCCcceeeceEEEEEe
Q psy14532 91 WCTATNKQGRSSSQNVHISVT 111 (258)
Q Consensus 91 ~C~~~~~~~~~~~~~~~l~v~ 111 (258)
+|.|.|..|... .++.|.|.
T Consensus 81 tc~A~N~~g~~~-~t~~l~V~ 100 (101)
T cd05859 81 TALAQNEDAVKS-YTFALQIQ 100 (101)
T ss_pred EEEEEcCCceEE-EEEEEEEE
Confidence 999999988776 67777764
No 60
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.56 E-value=3.2e-14 Score=84.08 Aligned_cols=70 Identities=23% Similarity=0.442 Sum_probs=58.0
Q ss_pred cEEEEeeeCcccCceEEEEeCCcccCCCcceEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEE
Q psy14532 129 PLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHIS 200 (258)
Q Consensus 129 ~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~ 200 (258)
.+.|.|.+.|.|.|.++|++++..+....++.+...+.|.|.++.. +|.|.|+|.|.|..|+ ....+.|.
T Consensus 1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~~~~~~~~~~~l~i~~v~~-~D~G~Y~C~A~N~~G~-~~~~~~L~ 70 (71)
T cd05723 1 DVIFECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKEHNLQVLGLVK-SDEGFYQCIAENDVGN-VQASAQLI 70 (71)
T ss_pred CEEEEEEEEEeCCCEEEEEECCeECCCCCCEEEEecCCEEEEcCCc-ccCEEEEEEEEcCCCE-EEEEEEEE
Confidence 3789999999999999999999887766666666778899999987 9999999999999884 44445444
No 61
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=99.56 E-value=5e-14 Score=84.86 Aligned_cols=79 Identities=23% Similarity=0.448 Sum_probs=61.4
Q ss_pred ceeeceeeeecCCCceEEEEEEeecCCC-eEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeeccc
Q psy14532 5 LIYKFIQQTLQPGPPVSLKCIATGNPTP-HISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQK 83 (258)
Q Consensus 5 ~~~~~~~~~~~~g~~v~l~C~~~~~~~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~ 83 (258)
|...|.++.+.+|+++.|.|.+.|.|.| +|.|+|+|.++... .. ...+.|.|..+
T Consensus 1 f~~~P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~-----~~-----------------~~~s~L~i~~~-- 56 (81)
T cd05749 1 FTVEPEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGDP-----PA-----------------PSPSVLNVPGL-- 56 (81)
T ss_pred CcCCCCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCCC-----CC-----------------CCCCEEEEccc--
Confidence 3456788999999999999999999999 79999999877531 00 01346788766
Q ss_pred CCCceEEEEEEEeCCcceeeceEEE
Q psy14532 84 DHDRGVYWCTATNKQGRSSSQNVHI 108 (258)
Q Consensus 84 ~~d~G~Y~C~~~~~~~~~~~~~~~l 108 (258)
.|+|.|.|.+.|..|...+..+.|
T Consensus 57 -~d~g~Y~C~A~N~~G~~~s~~a~~ 80 (81)
T cd05749 57 -NETSKFSCEAHNAKGVTTSRTGTV 80 (81)
T ss_pred -cCCeEEEEEEEeccCcEEeeeEEe
Confidence 478999999999998766555544
No 62
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.56 E-value=6.1e-14 Score=86.16 Aligned_cols=83 Identities=29% Similarity=0.515 Sum_probs=61.3
Q ss_pred CceEEEEEEeecCCC--eEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEEEEEE
Q psy14532 18 PPVSLKCIATGNPTP--HISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTAT 95 (258)
Q Consensus 18 ~~v~l~C~~~~~~~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~~~ 95 (258)
+++.|.|.+.+.|.+ .+.|++++..+........+.. .......++|.|.++ +..|+|.|+|.+.
T Consensus 1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~------------~~~~~~~~~L~I~~v-~~~D~G~Y~C~a~ 67 (85)
T cd04970 1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRR------------VGGKDSNGDLMIRNA-QLKHAGKYTCTAQ 67 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEE------------EecccccceEEEccC-CHHhCeeeEEEEe
Confidence 578999999998876 6799999987754311111100 011123578999999 9999999999999
Q ss_pred eCCcceeeceEEEEEecCC
Q psy14532 96 NKQGRSSSQNVHISVTGAP 114 (258)
Q Consensus 96 ~~~~~~~~~~~~l~v~~~~ 114 (258)
|..+... ..+.|.|..+|
T Consensus 68 n~~g~~~-~~~~l~V~~pP 85 (85)
T cd04970 68 TVVDSLS-ASADLIVRGPP 85 (85)
T ss_pred cCCCcEE-EEEEEEEECCC
Confidence 9888776 88889988764
No 63
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.56 E-value=5.3e-14 Score=83.00 Aligned_cols=69 Identities=26% Similarity=0.476 Sum_probs=54.6
Q ss_pred eEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEEEEEEeCCc
Q psy14532 20 VSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQG 99 (258)
Q Consensus 20 v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~~~~~~~ 99 (258)
|.|.|.+.|.|.|.+.|+|+|..+... .+.. ...++|.|.++ ..+|+|.|+|.+.|..|
T Consensus 1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~---~~~~-----------------~~~~~L~I~~v-~~~D~G~YtC~a~N~~g 59 (71)
T cd04976 1 VRLPVKVKAYPPPEIQWYKNGKLISEK---NRTK-----------------KSGHSLTIKDV-TEEDAGNYTVVLTNKQA 59 (71)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCC---CEEE-----------------cCCCEEEECcC-CHHHCEEEEEEEEcCCc
Confidence 579999999999999999999887654 1111 12468999999 99999999999999888
Q ss_pred ceeeceEEEEE
Q psy14532 100 RSSSQNVHISV 110 (258)
Q Consensus 100 ~~~~~~~~l~v 110 (258)
... ..+.+.+
T Consensus 60 ~~~-~~~~~~~ 69 (71)
T cd04976 60 KLE-KRLTFTL 69 (71)
T ss_pred cEE-EEEEEEE
Confidence 765 5555544
No 64
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.55 E-value=4.5e-14 Score=88.05 Aligned_cols=80 Identities=31% Similarity=0.458 Sum_probs=63.3
Q ss_pred CCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcceEEec----CCeEEEEecccCCCCcEEEEEEEeCCCCCcc
Q psy14532 119 MGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFP----NGTLLIENVQKDHDRGVYWCTATNKQGRSSS 194 (258)
Q Consensus 119 ~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~ 194 (258)
+....+.+|+.+.|.|.+.|.|.|.+.|++++..+....++.+.. ...|.|.++.. +|+|.|+|.+.|..|. .+
T Consensus 8 p~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~a~N~~G~-~~ 85 (92)
T cd05737 8 PDVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSS-EDSGKYGIVVKNKYGG-ET 85 (92)
T ss_pred CceEEEeCCCcEEEEEEEEecCCCeEEEEECCEECccCCCEEEEEcCCCEEEEEEccCCh-hhCEEEEEEEEECCCc-ce
Confidence 345678899999999999999999999999998887665554432 23699999997 9999999999999884 33
Q ss_pred ceEEEE
Q psy14532 195 QNVHIS 200 (258)
Q Consensus 195 ~~~~l~ 200 (258)
..+.|.
T Consensus 86 ~~~~v~ 91 (92)
T cd05737 86 VDVTVS 91 (92)
T ss_pred EEEEEe
Confidence 444443
No 65
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.55 E-value=7e-14 Score=86.28 Aligned_cols=80 Identities=35% Similarity=0.616 Sum_probs=65.3
Q ss_pred CCcceecCCcEEEEeee-CcccCceEEEEeCCcccCC-CcceEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceE
Q psy14532 120 GNVSAIAGEPLYLGCPV-AGYPIESITWQKGVQQLPL-NRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNV 197 (258)
Q Consensus 120 ~~~~~~~g~~~~l~C~~-~~~~~~~i~W~~~~~~~~~-~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~ 197 (258)
....+.+|+++.|.|.+ .+.|.+.+.|++++..+.. ..+.....++.|.|.++.. +|+|.|+|.+.|..|...+..+
T Consensus 4 ~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~~~~L~I~~~~~-~D~G~Y~C~a~N~~G~~~s~~~ 82 (86)
T cd05724 4 SDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVDDGNLLIAEARK-SDEGTYKCVATNMVGERESAAA 82 (86)
T ss_pred ccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEEccCCEEEEeECCc-ccCEEEEEEEEeccCceeeeeE
Confidence 45677899999999998 6889999999999887765 3445555578899999997 9999999999999886666665
Q ss_pred EEE
Q psy14532 198 HIS 200 (258)
Q Consensus 198 ~l~ 200 (258)
.|.
T Consensus 83 ~l~ 85 (86)
T cd05724 83 RLS 85 (86)
T ss_pred EEE
Confidence 554
No 66
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.55 E-value=5e-14 Score=86.42 Aligned_cols=80 Identities=29% Similarity=0.489 Sum_probs=65.5
Q ss_pred cCCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcceEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceE
Q psy14532 118 PMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNV 197 (258)
Q Consensus 118 ~~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~ 197 (258)
.+....+..|+.+.|.|.+.|.|.|.+.|++++..+....+... .++.|.|.++.. +|+|.|+|.|.|..|. ....+
T Consensus 5 ~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~-~~~~L~i~~~~~-~D~G~Y~C~a~N~~G~-~~~~~ 81 (85)
T cd05728 5 VISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEV-EAGDLRITKLSL-SDSGMYQCVAENKHGT-IYASA 81 (85)
T ss_pred cCCccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCCCCeEEE-eCCEEEEeeCCH-HHCEEEEEEEECCCCe-EEEEE
Confidence 45567788999999999999999999999999998876555543 567899999997 9999999999999884 44444
Q ss_pred EEE
Q psy14532 198 HIS 200 (258)
Q Consensus 198 ~l~ 200 (258)
.|.
T Consensus 82 ~l~ 84 (85)
T cd05728 82 ELA 84 (85)
T ss_pred EEE
Confidence 443
No 67
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.55 E-value=8.1e-14 Score=83.06 Aligned_cols=73 Identities=36% Similarity=0.636 Sum_probs=56.9
Q ss_pred eEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEEEEEEeCCc
Q psy14532 20 VSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQG 99 (258)
Q Consensus 20 v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~~~~~~~ 99 (258)
++|.|.+.|.|.|.+.|+|++..+..... .++ ....+++|.|.++ +.+|+|.|+|.+.|..|
T Consensus 1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~-~~~----------------~~~~~g~L~i~~~-~~~D~G~Y~C~a~N~~G 62 (74)
T cd05738 1 ATMLCAASGNPDPEITWFKDFLPVDTTSN-GRI----------------KQLRSGALQIENS-EESDQGKYECVATNSAG 62 (74)
T ss_pred CEEEEEEeEecCCEEEEEECCEECccCCC-CCE----------------EEcCCcEEEECCC-ChhhCEEEEEEEECCCC
Confidence 57999999999999999999887653211 111 1224568999999 99999999999999998
Q ss_pred ceeeceEEEEE
Q psy14532 100 RSSSQNVHISV 110 (258)
Q Consensus 100 ~~~~~~~~l~v 110 (258)
...+..+.|.|
T Consensus 63 ~~~s~~a~l~v 73 (74)
T cd05738 63 TRYSAPANLYV 73 (74)
T ss_pred ceEcccEEEEE
Confidence 87657777765
No 68
>KOG3515|consensus
Probab=99.54 E-value=1.6e-13 Score=112.06 Aligned_cols=223 Identities=20% Similarity=0.300 Sum_probs=146.0
Q ss_pred cceeeceeeeecCCCceEEEEEEeec-CCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecc
Q psy14532 4 QLIYKFIQQTLQPGPPVSLKCIATGN-PTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQ 82 (258)
Q Consensus 4 ~~~~~~~~~~~~~g~~v~l~C~~~~~-~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~ 82 (258)
.......+..+..|+.|.|.|.+.+. |...|.|++.++.+.. +. ....+.+|.....
T Consensus 9 v~~~~~l~~~~~~g~~v~l~C~v~~~pp~~~~eW~h~~~~~~~-----~~----------------~~~~~~~~~~~~~- 66 (741)
T KOG3515|consen 9 VCESSSLTVGLRLGEDVPLPCRVNSNPPEIDVEWYHSTSGEHG-----RY----------------ATIADPTLVTTGD- 66 (741)
T ss_pred cccCCCCChhhccCCcceeeeecCCCCCCcceEEEecCccccc-----cc----------------ccccCCceeeecc-
Confidence 33333344488999999999999876 5568999998765541 11 1112446666666
Q ss_pred cCCCceEEEEEEEeCCcceeeceEEEEEecCCeecc-CCCcceecCCcEEEEeeeC--cccCceEEEEeCCcccCCCcc-
Q psy14532 83 KDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRP-MGNVSAIAGEPLYLGCPVA--GYPIESITWQKGVQQLPLNRR- 158 (258)
Q Consensus 83 ~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~-~~~~~~~~g~~~~l~C~~~--~~~~~~i~W~~~~~~~~~~~~- 158 (258)
..+.-+.|.|++.+..+........+.+..++.-.. ........+..+.+.|.+. +.|.+.+.|..++........
T Consensus 67 ~~~~~~~~~c~a~ns~~~~~~~~~~l~v~~~pa~~~~~~e~~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~ 146 (741)
T KOG3515|consen 67 VRDTVAELNCRAFNSVGMPSRCPMILDVDYPPACLPELGEIFQVDKGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVNQ 146 (741)
T ss_pred hhhhhhhhhhhhcccccCceecceeeccccCccccccccchhhhcCCeEEEEEeecCCCCCCcceeeeeccEEeecccCC
Confidence 666778999999998766555777777777664322 3334455678899999653 467889999987654322110
Q ss_pred -e---------EEecCCeEEEEecccCCCCcEEEEEEEeCCCCCc--cceEEEEeecCCc---cccCCCCCccCCCCeee
Q psy14532 159 -Q---------KVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSS--SQNVHISVTVPPK---IAPFEFQPDLHSGDRAG 223 (258)
Q Consensus 159 -~---------~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~--~~~~~l~v~~~p~---~~~~~~~~~~~~g~~~~ 223 (258)
. .......+.+...+. ++.|.|+|.+.+...... .....+.+..+.. +..........+|+.+.
T Consensus 147 ~~~~~~~a~gss~t~~s~l~~~v~Rk-a~~g~~tC~A~nr~s~~l~~~~~~~i~v~~~~~~~~~~~~~~~qsF~~g~~in 225 (741)
T KOG3515|consen 147 RGRVGAGALGSSYTEPSLLKQTVSRK-ADNGNYTCPANNRNSPGLSFAKQLTIIVEAPCKGIGITGAQEQQSFTEGQTIN 225 (741)
T ss_pred cccccccccCceeccccceeeEEEEe-cCCceeEcccccccCccccccceeEeecccccccceecchhhcCcccccceEE
Confidence 0 001233466666665 999999999998632222 2233333333221 11112225678899999
Q ss_pred EEEEeccCCCCceeEEEECCEecccc
Q psy14532 224 VQCLVTKGDPPLTISWLKNGLPILSA 249 (258)
Q Consensus 224 l~C~~~~~~p~~~~~W~~~g~~l~~~ 249 (258)
|.|.+.++.|.+.+.|+++...+..+
T Consensus 226 lvc~~~gg~P~~~~~w~~~s~~~~~~ 251 (741)
T KOG3515|consen 226 LVCNAQGGNPSQQQTWYKDSRPQSES 251 (741)
T ss_pred EEehhhcCCcchhhhhccccccchhh
Confidence 99999889999999999998888765
No 69
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.54 E-value=8.6e-14 Score=86.58 Aligned_cols=85 Identities=25% Similarity=0.377 Sum_probs=63.5
Q ss_pred eceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCc
Q psy14532 8 KFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDR 87 (258)
Q Consensus 8 ~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~ 87 (258)
.|..+.+.+|+++.|.|.+.+.|.+.+.|++++..+... .++... .. .....+|.|.++ ..+|+
T Consensus 7 ~p~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~---~~~~~~--------~~----~~~~~~L~I~~~-~~~D~ 70 (92)
T cd05891 7 LPDVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELS---EHYSVK--------LE----QGKYASLTIKGV-TSEDS 70 (92)
T ss_pred CCCcEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCC---CCEEEE--------Ec----CCCEEEEEECCC-ChhhC
Confidence 456778999999999999999999999999998776533 111110 00 001136999999 99999
Q ss_pred eEEEEEEEeCCcceeeceEEEE
Q psy14532 88 GVYWCTATNKQGRSSSQNVHIS 109 (258)
Q Consensus 88 G~Y~C~~~~~~~~~~~~~~~l~ 109 (258)
|.|+|.+.|..|... ..+.|.
T Consensus 71 G~Y~C~a~N~~G~~~-~~~~v~ 91 (92)
T cd05891 71 GKYSINVKNKYGGET-VDVTVS 91 (92)
T ss_pred EEEEEEEEeCCCcee-eEEEEE
Confidence 999999999988776 655554
No 70
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=99.54 E-value=9.2e-14 Score=86.45 Aligned_cols=89 Identities=27% Similarity=0.386 Sum_probs=63.0
Q ss_pred ceeeceeeeecCCCceEEEEEEeecCCCeEEEee-CCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeeccc
Q psy14532 5 LIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKL-DGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQK 83 (258)
Q Consensus 5 ~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~ 83 (258)
+...|....+.+|+++.|.|.+.|.| +.+.|++ ++..+... .+.... .......+|.|.++ +
T Consensus 3 v~v~p~~~~v~~G~~~~l~C~~~G~p-~~i~W~~~~~~~~~~~---~~~~~~------------~~~~~~~~L~I~~v-~ 65 (92)
T cd04977 3 VDIVPSQGEISVGESKFFLCQVIGEP-KDISWFSPNGEKLVTQ---QQISVV------------QNDDVRSTLTIYNA-N 65 (92)
T ss_pred EEEecCcEEECCCCeEEEEEEeEeeC-CeEEEECCCCCEeccC---CCEEEE------------eCCCCEEEEEEecC-C
Confidence 45677888999999999999999986 4999997 45444331 111100 00011347999999 9
Q ss_pred CCCceEEEEEEEeCCcceeeceEEEEE
Q psy14532 84 DHDRGVYWCTATNKQGRSSSQNVHISV 110 (258)
Q Consensus 84 ~~d~G~Y~C~~~~~~~~~~~~~~~l~v 110 (258)
.+|+|.|+|.+.|..|.....++.|.|
T Consensus 66 ~~D~G~Y~C~A~N~~g~~~~~sv~l~~ 92 (92)
T cd04977 66 IEDAGIYKCVATDAKGTESEATVNLKI 92 (92)
T ss_pred cccCEEEEEEEEcCCCCcceeEEEEEC
Confidence 999999999999987655446666653
No 71
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.53 E-value=1.8e-13 Score=82.16 Aligned_cols=74 Identities=32% Similarity=0.636 Sum_probs=56.0
Q ss_pred eEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEEEEEEeCCc
Q psy14532 20 VSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQG 99 (258)
Q Consensus 20 v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~~~~~~~ 99 (258)
|+|.|.+.|.|.|.+.|+|+|.++.... ..+.+ ....++|.|.++ ..+|+|.|.|.+.|..|
T Consensus 1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~--~~~~~---------------~~~~~~L~I~~~-~~~D~G~Y~C~a~N~~G 62 (77)
T cd05760 1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQ--GNYSV---------------SSKERTLTLRSA-GPDDSGLYYCCAHNAFG 62 (77)
T ss_pred CEEEEEeeecCCCcEEEEECCEECCCCC--ccEEE---------------eCCCCEEEEeeC-CcccCEEEEEEEEeCCC
Confidence 5899999999999999999998775431 11111 112457999999 99999999999999988
Q ss_pred cee-eceEEEEEe
Q psy14532 100 RSS-SQNVHISVT 111 (258)
Q Consensus 100 ~~~-~~~~~l~v~ 111 (258)
... +..+.|.|.
T Consensus 63 ~~~s~~~~~l~v~ 75 (77)
T cd05760 63 SVCSSQNFTLSII 75 (77)
T ss_pred eEeeCceEEEEEe
Confidence 754 356666664
No 72
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.53 E-value=1.1e-13 Score=80.95 Aligned_cols=61 Identities=23% Similarity=0.341 Sum_probs=50.2
Q ss_pred eEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEEEEEEeCCc
Q psy14532 20 VSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQG 99 (258)
Q Consensus 20 v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~~~~~~~ 99 (258)
+.|.|.+.|.|.|.+.|+|+|.++... .. ......|.|.++ ..+|+|.|+|.+.|..|
T Consensus 1 ~~~~c~v~G~P~P~v~W~k~g~~l~~~---~~------------------~~~~~~L~I~~v-~~~D~G~YtC~a~N~~G 58 (70)
T cd05864 1 VKIPVKYYGYPPPEVKWYKNGQLIVLN---HT------------------FKRGVHLTIYEV-TEKDAGNYTVVLTNPIT 58 (70)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCC---CE------------------EccCCEEEECcC-CHHHCEEEEEEEEECCC
Confidence 478999999999999999999988643 11 012347999999 99999999999999998
Q ss_pred cee
Q psy14532 100 RSS 102 (258)
Q Consensus 100 ~~~ 102 (258)
...
T Consensus 59 ~~~ 61 (70)
T cd05864 59 KEE 61 (70)
T ss_pred cee
Confidence 665
No 73
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.53 E-value=5.9e-14 Score=83.67 Aligned_cols=71 Identities=35% Similarity=0.533 Sum_probs=58.8
Q ss_pred EEEEeeeCcccCceEEEEeCCcccC--CCcceEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEe
Q psy14532 130 LYLGCPVAGYPIESITWQKGVQQLP--LNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISV 201 (258)
Q Consensus 130 ~~l~C~~~~~~~~~i~W~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v 201 (258)
++|.|.+.|.|.|.+.|++++..+. ...++....++.|.|.++.. +|+|.|+|.|.|..|...+....|.|
T Consensus 1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~g~L~i~~~~~-~D~G~Y~C~a~N~~G~~~s~~a~l~v 73 (74)
T cd05738 1 ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQLRSGALQIENSEE-SDQGKYECVATNSAGTRYSAPANLYV 73 (74)
T ss_pred CEEEEEEeEecCCEEEEEECCEECccCCCCCEEEcCCcEEEECCCCh-hhCEEEEEEEECCCCceEcccEEEEE
Confidence 4789999999999999999988775 34455566677899999987 99999999999999876667666655
No 74
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.53 E-value=1.6e-13 Score=88.03 Aligned_cols=100 Identities=24% Similarity=0.365 Sum_probs=69.6
Q ss_pred CCcceeeceeeee----cCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEE
Q psy14532 2 HPQLIYKFIQQTL----QPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLL 77 (258)
Q Consensus 2 ~p~~~~~~~~~~~----~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 77 (258)
+|.|...+....+ ..|.++.|.|.+.|.|.+.+.|+|++..+.... .++.... .. ......++|.
T Consensus 4 ~P~~~~~~~~~~~~~~~~~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~--~r~~~~~-------~~--~~~~~~s~L~ 72 (109)
T cd05773 4 APDLQKGPQLRKVASRGDGSSDANLVCQAQGVPRVQFRWAKNGVPLDLGN--PRYEETT-------EH--TGTVHTSILT 72 (109)
T ss_pred ccccccCCceEEEEEecCCCCEEEEEEECcccCCCEEEEEECCEECCCCC--CeEEEEe-------ec--cCccceeEEE
Confidence 5677555542222 356899999999999999999999998875431 1211110 00 0001135799
Q ss_pred Eeeccc-CCCceEEEEEEEeCCcceeeceEEEEEecCC
Q psy14532 78 IENVQK-DHDRGVYWCTATNKQGRSSSQNVHISVTGAP 114 (258)
Q Consensus 78 i~~~~~-~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~ 114 (258)
|.++ . ..|.|.|+|.|.|..|... ..+.|.+...|
T Consensus 73 I~~v-~~~~D~G~Y~C~A~N~~G~~~-~~i~L~~~~~p 108 (109)
T cd05773 73 IINV-SAALDYALFTCTAHNSLGEDS-LDIQLVSTSRP 108 (109)
T ss_pred ECcC-CccCCCEEEEEEEEeCCccCc-EEEEEEecCCC
Confidence 9998 6 6899999999999999887 88888887665
No 75
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.53 E-value=9e-14 Score=85.94 Aligned_cols=81 Identities=28% Similarity=0.544 Sum_probs=64.5
Q ss_pred CCCcceecCCcEEEEeeeCcccCceEEEEe-CCcccCCCcceEEecCC---eEEEEecccCCCCcEEEEEEEeCCCCCcc
Q psy14532 119 MGNVSAIAGEPLYLGCPVAGYPIESITWQK-GVQQLPLNRRQKVFPNG---TLLIENVQKDHDRGVYWCTATNKQGRSSS 194 (258)
Q Consensus 119 ~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~-~~~~~~~~~~~~~~~~~---~l~i~~~~~~~~~g~y~C~~~~~~~~~~~ 194 (258)
+....+..|+.+.|.|.+.|.|. .+.|++ ++..+....+..+..++ .|.|.++.. +|+|.|+|.|.|..|....
T Consensus 7 ~~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~~r~~~~~~g~~~~L~I~~v~~-~D~G~Y~C~A~N~~G~~~~ 84 (92)
T cd05866 7 LSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNANI-EDAGIYRCQATDAKGQTQE 84 (92)
T ss_pred ecceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCCCCEEEEeCCCeeEEEEecCCh-HHCEEEEEEEEcCCCcEEE
Confidence 34566889999999999999887 899998 45565555556655554 799999997 9999999999999986666
Q ss_pred ceEEEEe
Q psy14532 195 QNVHISV 201 (258)
Q Consensus 195 ~~~~l~v 201 (258)
..+.|.+
T Consensus 85 ~~i~l~~ 91 (92)
T cd05866 85 ATVVLEI 91 (92)
T ss_pred EEEEEEE
Confidence 6666654
No 76
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.52 E-value=1.2e-13 Score=81.67 Aligned_cols=70 Identities=39% Similarity=0.700 Sum_probs=55.1
Q ss_pred eEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEEEEEEeCCc
Q psy14532 20 VSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQG 99 (258)
Q Consensus 20 v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~~~~~~~ 99 (258)
+.|.|.+.|.|.|.+.|+|++..+.... . .....+++|.|.++ ..+|+|.|+|.+.|..|
T Consensus 1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~~---~----------------~~~~~~~~L~I~~v-~~~D~G~Y~C~a~N~~G 60 (71)
T cd05876 1 LVLECIAEGLPTPEVHWDRIDGPLSPNR---T----------------KKLNNNKTLQLDNV-LESDDGEYVCTAENSEG 60 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCcCCCCCc---e----------------eEEcCCCEEEEccc-CHHhCEEEEEEEEcCCC
Confidence 5799999999999999999987554320 0 01123568999999 99999999999999999
Q ss_pred ceeeceEEEEE
Q psy14532 100 RSSSQNVHISV 110 (258)
Q Consensus 100 ~~~~~~~~l~v 110 (258)
... ..+.|.|
T Consensus 61 ~~~-~~~~l~V 70 (71)
T cd05876 61 SAR-HHYTVTV 70 (71)
T ss_pred eEE-EEEEEEE
Confidence 876 6676665
No 77
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.52 E-value=1e-13 Score=85.02 Aligned_cols=78 Identities=28% Similarity=0.560 Sum_probs=62.2
Q ss_pred CcceecCCcEEEEeeeCcccCceEEEEeCCcccCCC-cceEEec---CCeEEEEecccCCCCcEEEEEEEeCCCCCccce
Q psy14532 121 NVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLN-RRQKVFP---NGTLLIENVQKDHDRGVYWCTATNKQGRSSSQN 196 (258)
Q Consensus 121 ~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~-~~~~~~~---~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~ 196 (258)
.+.+..|+.+.|.|.+.|.|.|.+.|++++..+... .++.+.. .+.|.|.++.. +|+|.|+|.|.|..|. .+..
T Consensus 4 ~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~-~D~G~Y~c~a~N~~G~-~~~~ 81 (86)
T cd05894 4 TIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAER-EDEGVYTITVTNPVGE-DHAS 81 (86)
T ss_pred EEEEEcCCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEEEEcCCeEEEEECCCcc-CcCEEEEEEEEeCCCc-EEEE
Confidence 356789999999999999999999999999888643 2344332 35799999997 9999999999999984 4455
Q ss_pred EEEE
Q psy14532 197 VHIS 200 (258)
Q Consensus 197 ~~l~ 200 (258)
+.|.
T Consensus 82 ~~l~ 85 (86)
T cd05894 82 LFVK 85 (86)
T ss_pred EEEE
Confidence 5554
No 78
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.52 E-value=6.2e-14 Score=83.25 Aligned_cols=69 Identities=30% Similarity=0.599 Sum_probs=53.9
Q ss_pred EEEEeeeCcccCceEEEEeCCcccCCC-cceEEecC--C--eEEEEecccCCCCcEEEEEEEeCCCCCccceEEEE
Q psy14532 130 LYLGCPVAGYPIESITWQKGVQQLPLN-RRQKVFPN--G--TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHIS 200 (258)
Q Consensus 130 ~~l~C~~~~~~~~~i~W~~~~~~~~~~-~~~~~~~~--~--~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~ 200 (258)
+.|.|.+.|.|.|.++|++++..+... .++.+..+ + +|.|.++.. +|+|.|+|.|.|..|. .+....|.
T Consensus 1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~-~D~G~Y~C~A~N~~G~-~~~~a~L~ 74 (75)
T cd05892 1 VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNK-KDAGWYTVSAVNEAGV-ATCHARLD 74 (75)
T ss_pred CEEEEEEEecCCCeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCCh-hhCEEEEEEEEcCcCe-EEEEEEEe
Confidence 479999999999999999999888643 44444332 2 699999998 9999999999999884 33444444
No 79
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=99.52 E-value=2e-13 Score=79.86 Aligned_cols=68 Identities=25% Similarity=0.526 Sum_probs=51.9
Q ss_pred CCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEEEEEEe
Q psy14532 17 GPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATN 96 (258)
Q Consensus 17 g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~~~~ 96 (258)
|++++|.|.+.|.|.|.|.|+|++..+... .+.. .....|.|.++ . |+|.|+|.+.|
T Consensus 1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~---~~~~-----------------~~~~~L~i~~~-~--d~G~Y~C~A~N 57 (69)
T cd05739 1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKE---DEMP-----------------VGRNVLELTNI-Y--ESANYTCVAIS 57 (69)
T ss_pred CCeEEEEEEeeecCCCEEEEEECCEECCCc---ccee-----------------cCccEEEEecc-c--cCeeEEEEEEe
Confidence 788999999999999999999999876443 1111 12346888887 4 78999999999
Q ss_pred CCcceeeceEEE
Q psy14532 97 KQGRSSSQNVHI 108 (258)
Q Consensus 97 ~~~~~~~~~~~l 108 (258)
..|... ..+.|
T Consensus 58 ~~G~~~-~~a~l 68 (69)
T cd05739 58 SLGMIE-ATAQV 68 (69)
T ss_pred CCCEEE-EEEEE
Confidence 998766 44443
No 80
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.52 E-value=7.3e-14 Score=86.91 Aligned_cols=83 Identities=18% Similarity=0.266 Sum_probs=61.2
Q ss_pred eeeeecCCCceEEEEEEee-----cCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccC
Q psy14532 10 IQQTLQPGPPVSLKCIATG-----NPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKD 84 (258)
Q Consensus 10 ~~~~~~~g~~v~l~C~~~~-----~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~ 84 (258)
....+.+|+++.|.|.+.+ .|.+.+.|||++..+..... ... + ....+++|.|.++ ..
T Consensus 7 ~~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~-~~~--------------r-~~~~~~~L~I~~~-~~ 69 (94)
T cd05756 7 KKSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTE-ERS--------------R-MHQQKDLLWFLPA-AL 69 (94)
T ss_pred eEEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCccccc-ccc--------------e-eeecCCeEEEccC-Cc
Confidence 4567889999999999988 57889999999865432100 000 0 1113568999999 99
Q ss_pred CCceEEEEEEEeCCcceeeceEEEEE
Q psy14532 85 HDRGVYWCTATNKQGRSSSQNVHISV 110 (258)
Q Consensus 85 ~d~G~Y~C~~~~~~~~~~~~~~~l~v 110 (258)
+|+|.|.|.+.|..+... ..+.|.|
T Consensus 70 ~DsG~Y~C~~~N~~g~~~-~~~~L~v 94 (94)
T cd05756 70 EDSGLYTCVVRNSTYCMK-VSISLTV 94 (94)
T ss_pred ccCeEEEEEEcCCCccEE-EEEEEEC
Confidence 999999999999988776 6666653
No 81
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.52 E-value=1.5e-13 Score=86.34 Aligned_cols=82 Identities=35% Similarity=0.646 Sum_probs=64.7
Q ss_pred CCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcc--eEEecCCeEEEEec-----ccCCCCcEEEEEEEeC-CC
Q psy14532 119 MGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRR--QKVFPNGTLLIENV-----QKDHDRGVYWCTATNK-QG 190 (258)
Q Consensus 119 ~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~--~~~~~~~~l~i~~~-----~~~~~~g~y~C~~~~~-~~ 190 (258)
+....+.+|+.+.|.|.+.+.|.+.+.|++++..+..... .....++.+.|.++ .. .|.|.|+|.+.|. .|
T Consensus 6 P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~l~i~~v~~~~~~~-~D~G~Y~C~a~N~~~G 84 (95)
T cd05722 6 PSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPNGSLLITSVVHSKHNK-PDEGFYQCVAQNDSLG 84 (95)
T ss_pred CCCeEEcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEEccCCeEEEeeeeccCCCC-CcCEEEEEEEECCccC
Confidence 4456677899999999999999999999999988764432 44456677888776 34 8999999999999 88
Q ss_pred CCccceEEEEe
Q psy14532 191 RSSSQNVHISV 201 (258)
Q Consensus 191 ~~~~~~~~l~v 201 (258)
...++.+.|.|
T Consensus 85 ~~~s~~~~l~v 95 (95)
T cd05722 85 SIVSRTARLTV 95 (95)
T ss_pred cEEEeeeEEeC
Confidence 76677776654
No 82
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.52 E-value=1.2e-13 Score=85.10 Aligned_cols=78 Identities=24% Similarity=0.428 Sum_probs=62.0
Q ss_pred CCcEEEEeeeCcccCceEEEEeCCcccCCC-cceEEec----C---CeEEEEecccCCCCcEEEEEEEeCCCCCccceEE
Q psy14532 127 GEPLYLGCPVAGYPIESITWQKGVQQLPLN-RRQKVFP----N---GTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVH 198 (258)
Q Consensus 127 g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~-~~~~~~~----~---~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~ 198 (258)
|+.+.|.|.+.|.|++.+.|++++..+... .++.+.. . ..|.|.++.. +|.|.|+|.|.|..|. ....+.
T Consensus 1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~-~D~G~YtC~A~N~~G~-~~~~~~ 78 (88)
T cd05735 1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVR-EDSGFFSCHAINSYGE-DRGIIQ 78 (88)
T ss_pred CCeEEEEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCc-ccCEEEEEEEEcCCCc-ceEEEE
Confidence 788999999999999999999999777543 2333221 1 4689999987 9999999999999994 557788
Q ss_pred EEeecCCc
Q psy14532 199 ISVTVPPK 206 (258)
Q Consensus 199 l~v~~~p~ 206 (258)
|.|..+|.
T Consensus 79 L~V~~~P~ 86 (88)
T cd05735 79 LTVQEPPD 86 (88)
T ss_pred EEEeCCCC
Confidence 88887764
No 83
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.52 E-value=2.2e-13 Score=81.30 Aligned_cols=75 Identities=29% Similarity=0.435 Sum_probs=54.7
Q ss_pred eEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEEEEEEeCCc
Q psy14532 20 VSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQG 99 (258)
Q Consensus 20 v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~~~~~~~ 99 (258)
+.|.|.+.|.|.|.+.|+|++..+.... .++.+... .....+|.|.++ +.+|+|.|+|.+.|..|
T Consensus 1 v~L~C~v~G~P~P~v~W~k~~~~i~~~~--~r~~~~~~------------~~~~~~L~I~~~-~~~D~G~Y~C~a~N~~G 65 (75)
T cd05744 1 VRLECRVSAIPPPQIFWKKNNEMLTYNT--DRISLYQD------------NCGRICLLIQNA-NKEDAGWYTVSAVNEAG 65 (75)
T ss_pred CEEEEEEeecCCCeEEEEECCEECCCCC--CcEEEEEc------------CCCeEEEEECCC-CcccCEEEEEEEEcCCC
Confidence 5799999999999999999998875331 11111100 001125999999 99999999999999999
Q ss_pred ceeeceEEEEE
Q psy14532 100 RSSSQNVHISV 110 (258)
Q Consensus 100 ~~~~~~~~l~v 110 (258)
... ..+.|.|
T Consensus 66 ~~~-~~~~l~v 75 (75)
T cd05744 66 VVS-CNARLDV 75 (75)
T ss_pred cEE-EEEEEeC
Confidence 876 5666653
No 84
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.52 E-value=1.6e-13 Score=85.63 Aligned_cols=81 Identities=27% Similarity=0.472 Sum_probs=60.7
Q ss_pred CCcceecCCcEEEEeeeCcccC-ceEEEEe-CCcccCC-CcceEEec----CCeEEEEecccCCCCcEEEEEEEeCCCCC
Q psy14532 120 GNVSAIAGEPLYLGCPVAGYPI-ESITWQK-GVQQLPL-NRRQKVFP----NGTLLIENVQKDHDRGVYWCTATNKQGRS 192 (258)
Q Consensus 120 ~~~~~~~g~~~~l~C~~~~~~~-~~i~W~~-~~~~~~~-~~~~~~~~----~~~l~i~~~~~~~~~g~y~C~~~~~~~~~ 192 (258)
....+..|+.+.|.|.+.|.|. +.+.|++ ++..+.. ..++.+.. .++|.|.++.. +|.|.|+|.|.|..+..
T Consensus 8 ~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~-~D~G~YtC~A~N~~~g~ 86 (96)
T cd05865 8 SQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANI-DDAGIYKCVVSNEDEGE 86 (96)
T ss_pred CccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccCh-hhCEEEEEEEEcCCCCc
Confidence 3456788999999999999984 7999998 6765544 33333322 25799999997 99999999999997435
Q ss_pred ccceEEEEe
Q psy14532 193 SSQNVHISV 201 (258)
Q Consensus 193 ~~~~~~l~v 201 (258)
....+.|.|
T Consensus 87 ~~~s~~l~v 95 (96)
T cd05865 87 SEATVNVKI 95 (96)
T ss_pred EEEEEEEEE
Confidence 556666654
No 85
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.52 E-value=1.8e-13 Score=86.02 Aligned_cols=81 Identities=27% Similarity=0.523 Sum_probs=64.7
Q ss_pred CcceecCCcEEEEeeeCcccCceEEEEeCCcccCCC-cceEEecC-CeEEEEecccCCCCcEEEEEEEeCCCCCccceEE
Q psy14532 121 NVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLN-RRQKVFPN-GTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVH 198 (258)
Q Consensus 121 ~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~-~~~~~~~~-~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~ 198 (258)
...+..|+.+.|.|.+.|.|.+.+.|++++..+... .++..... ..|.|.++.. +|.|.|+|.|.|..|. ....+.
T Consensus 12 ~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~a~N~~G~-~~~~~~ 89 (95)
T cd05730 12 NATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSFNEDGSEMTILDVDK-LDEAEYTCIAENKAGE-QEAEIH 89 (95)
T ss_pred ceEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCCCCEEEEeCCCCEEEECCCCh-hhCEEEEEEEEcCCCe-EEEEEE
Confidence 346788999999999999999999999999877654 33333333 4699999997 9999999999999984 556777
Q ss_pred EEeec
Q psy14532 199 ISVTV 203 (258)
Q Consensus 199 l~v~~ 203 (258)
|.|..
T Consensus 90 L~V~~ 94 (95)
T cd05730 90 LKVFA 94 (95)
T ss_pred EEEEe
Confidence 77653
No 86
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.52 E-value=5.1e-14 Score=82.76 Aligned_cols=61 Identities=33% Similarity=0.562 Sum_probs=54.2
Q ss_pred EEEEeeeCcccCceEEEEeCCcccCCCcceEEecCCeEEEEecccCCCCcEEEEEEEeCCCC
Q psy14532 130 LYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGR 191 (258)
Q Consensus 130 ~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~ 191 (258)
+.|.|.+.|.|.|.+.|++++..+....++.+..++.|.|.++.. +|+|.|+|.|.|..|.
T Consensus 1 v~L~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~~~L~I~~~~~-~D~G~Y~C~a~N~~G~ 61 (69)
T cd05746 1 VQIPCSAQGDPEPTITWNKDGVQVTESGKFHISPEGYLAIRDVGV-ADQGRYECVARNTIGY 61 (69)
T ss_pred CEeEecceEeCCCEEEEEECCEECCCCCCEEECCCCEEEECcCCh-hhCEEEEEEEECCCCc
Confidence 479999999999999999999888766667676788999999997 9999999999999884
No 87
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.52 E-value=9.8e-14 Score=81.54 Aligned_cols=68 Identities=35% Similarity=0.660 Sum_probs=53.7
Q ss_pred eEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEEEEEEeCCc
Q psy14532 20 VSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQG 99 (258)
Q Consensus 20 v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~~~~~~~ 99 (258)
|.|.|.+.+.|.|.+.|+|++..+... .++. +..+++|.|.++ ..+|+|.|+|.+.|..|
T Consensus 1 v~L~C~~~g~P~p~i~W~k~g~~~~~~---~~~~----------------~~~~~~L~I~~~-~~~D~G~Y~C~a~N~~G 60 (69)
T cd05746 1 VQIPCSAQGDPEPTITWNKDGVQVTES---GKFH----------------ISPEGYLAIRDV-GVADQGRYECVARNTIG 60 (69)
T ss_pred CEeEecceEeCCCEEEEEECCEECCCC---CCEE----------------ECCCCEEEECcC-ChhhCEEEEEEEECCCC
Confidence 579999999999999999998876543 1111 123568999999 99999999999999998
Q ss_pred ceeeceEEE
Q psy14532 100 RSSSQNVHI 108 (258)
Q Consensus 100 ~~~~~~~~l 108 (258)
... ..+.|
T Consensus 61 ~~~-~~~~L 68 (69)
T cd05746 61 YAS-VSMVL 68 (69)
T ss_pred cEE-EEEEe
Confidence 776 55444
No 88
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.52 E-value=2.1e-13 Score=84.72 Aligned_cols=85 Identities=32% Similarity=0.449 Sum_probs=61.3
Q ss_pred CCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEEEEEEe
Q psy14532 17 GPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATN 96 (258)
Q Consensus 17 g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~~~~ 96 (258)
|+++.|.|.+.+.|.+.+.|+|++..+..... .. . ....+..+..+++|.|.++ +.+|+|.|+|.+.|
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~-~~--~--------~~~~r~~v~~~~~L~I~~v-~~~D~G~Y~C~a~N 68 (90)
T cd05726 1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSY-QP--P--------QSSSRFSVSQTGDLTITNV-QRSDVGYYICQTLN 68 (90)
T ss_pred CCEEEEEEECCccCCCEEEEEeCCCcceeecc-cC--C--------CCCCeEEECCCCeEEEeeC-ChhhCEEEEEEEEc
Confidence 78999999999999999999998653211000 00 0 0011222234568999999 99999999999999
Q ss_pred CCcceeeceEEEEEecCC
Q psy14532 97 KQGRSSSQNVHISVTGAP 114 (258)
Q Consensus 97 ~~~~~~~~~~~l~v~~~~ 114 (258)
..|... ..+.|.|....
T Consensus 69 ~~G~~~-~~~~l~V~~~~ 85 (90)
T cd05726 69 VAGSIL-TKAYLEVTDVI 85 (90)
T ss_pred CCCceE-EEEEEEEeecc
Confidence 999877 77888887543
No 89
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.51 E-value=2.7e-13 Score=83.91 Aligned_cols=80 Identities=29% Similarity=0.503 Sum_probs=63.4
Q ss_pred CCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcceEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEE
Q psy14532 119 MGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVH 198 (258)
Q Consensus 119 ~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~ 198 (258)
+....+.+|+.+.|.|.+.|.|.+.+.|++++..+....... ..++.|.|.++.. +|+|.|+|.+.|..|. ......
T Consensus 8 p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~-~~~~~L~i~~v~~-~D~G~Y~C~a~N~~G~-~~~~~~ 84 (88)
T cd04968 8 PKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEIS-MSGAVLKIPNIQF-EDEGTYECEAENIKGK-DTHQGR 84 (88)
T ss_pred CCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCccEEE-EeCCEEEECCCCc-ccCEEEEEEEEECCCc-EEEEEE
Confidence 455668899999999999999999999999877654443332 4567899999997 9999999999999885 445555
Q ss_pred EEe
Q psy14532 199 ISV 201 (258)
Q Consensus 199 l~v 201 (258)
|.|
T Consensus 85 l~V 87 (88)
T cd04968 85 IYV 87 (88)
T ss_pred EEE
Confidence 544
No 90
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.51 E-value=1.6e-13 Score=85.34 Aligned_cols=74 Identities=24% Similarity=0.460 Sum_probs=57.6
Q ss_pred CCcEEEEeeeCcccCceEEEEeCCcccCCCcceEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEE
Q psy14532 127 GEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHIS 200 (258)
Q Consensus 127 g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~ 200 (258)
++.+.|.|.+.|.|.|.++|++++..+..........++.|.|.++...+|+|.|+|.|.|..|...++.+.|.
T Consensus 19 ~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l~ 92 (93)
T cd05849 19 EGKVSVNCRARANPFPIYKWRKNNLDIDLTNDRYSMVGGNLVINNPDKYKDAGRYVCIVSNIYGKVRSREATLS 92 (93)
T ss_pred CCeEEEeCcCccCCCCEEEEEECCEEccCCCCeEEEECCEEEECcCCcCCCCEEEEEEEEeCcceEEEccEEEe
Confidence 45799999999999999999999887753322223456789998875338999999999999987666666554
No 91
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.51 E-value=1e-13 Score=81.88 Aligned_cols=70 Identities=34% Similarity=0.598 Sum_probs=55.8
Q ss_pred EEEEeeeCcccCceEEEEeCCcccCCCcceEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEe
Q psy14532 130 LYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISV 201 (258)
Q Consensus 130 ~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v 201 (258)
+.|.|.+.|.|.|.+.|++++..+...........++|.|.++.. +|.|.|+|.|.|..|. .+..+.|.|
T Consensus 1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~a~N~~G~-~~~~~~l~V 70 (71)
T cd05876 1 LVLECIAEGLPTPEVHWDRIDGPLSPNRTKKLNNNKTLQLDNVLE-SDDGEYVCTAENSEGS-ARHHYTVTV 70 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCcCCCCCceeEEcCCCEEEEcccCH-HhCEEEEEEEEcCCCe-EEEEEEEEE
Confidence 478999999999999999998876544333344567899999997 9999999999999984 445555554
No 92
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.51 E-value=1.4e-13 Score=86.86 Aligned_cols=80 Identities=21% Similarity=0.201 Sum_probs=63.2
Q ss_pred CcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcceEEe---------cCCeEEEEecccCCCCcEEEEEEEeCCCC
Q psy14532 121 NVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVF---------PNGTLLIENVQKDHDRGVYWCTATNKQGR 191 (258)
Q Consensus 121 ~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~---------~~~~l~i~~~~~~~~~g~y~C~~~~~~~~ 191 (258)
...+..|+.+.|.|.+.|.|.|.+.|++++..+......... ..++|.|.++.. +|+|.|+|.|.|..+.
T Consensus 12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~-~D~G~Ytc~A~N~~g~ 90 (101)
T cd05859 12 LEFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKE-EDSGLYTALAQNEDAV 90 (101)
T ss_pred eEEEecCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCH-HHCEEEEEEEEcCCce
Confidence 456778899999999999999999999999988755432221 135799999997 9999999999999874
Q ss_pred CccceEEEEee
Q psy14532 192 SSSQNVHISVT 202 (258)
Q Consensus 192 ~~~~~~~l~v~ 202 (258)
.+.++.|.|.
T Consensus 91 -~~~t~~l~V~ 100 (101)
T cd05859 91 -KSYTFALQIQ 100 (101)
T ss_pred -EEEEEEEEEE
Confidence 4455666654
No 93
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.51 E-value=9.4e-14 Score=83.16 Aligned_cols=67 Identities=21% Similarity=0.373 Sum_probs=55.3
Q ss_pred CcceeeceeeeecCCCceEEEEEEeecCC-CeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeec
Q psy14532 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPT-PHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENV 81 (258)
Q Consensus 3 p~~~~~~~~~~~~~g~~v~l~C~~~~~~~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~ 81 (258)
|.+...|....+.+|++|+|.|.+.+.|. ..+.|+|++..+... ..+|.|.++
T Consensus 1 ~vv~~~P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~~--------------------------~~~l~i~~~ 54 (78)
T cd05752 1 AVVSLDPPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLETT--------------------------TNSYRIRAA 54 (78)
T ss_pred CeEEeCCCCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEeecc--------------------------CCeEEEeec
Confidence 56778888899999999999999988765 479999999876321 457888888
Q ss_pred ccCCCceEEEEEEEeC
Q psy14532 82 QKDHDRGVYWCTATNK 97 (258)
Q Consensus 82 ~~~~d~G~Y~C~~~~~ 97 (258)
.+|+|.|+|.+.+.
T Consensus 55 --~~dsG~Y~C~a~~~ 68 (78)
T cd05752 55 --NNDSGEYRCQTQGS 68 (78)
T ss_pred --ccCCEEeEEECCCC
Confidence 77999999999865
No 94
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.51 E-value=2e-13 Score=81.54 Aligned_cols=74 Identities=31% Similarity=0.552 Sum_probs=56.1
Q ss_pred ceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEEEEEEeCC
Q psy14532 19 PVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQ 98 (258)
Q Consensus 19 ~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~~~~~~ 98 (258)
++.|.|.+.|.|.|.+.|+|++..+... .+..+. .......|.|.++ ...|+|.|+|.+.|..
T Consensus 1 ~~~l~c~~~G~P~p~v~W~k~g~~l~~~---~~~~~~-------------~~~~~~~L~I~~~-~~~D~G~Y~C~a~N~~ 63 (74)
T cd05748 1 SVRLEVPISGRPTPTVTWSKDGKPLKLS---GRVQIE-------------TTASSTSLVIKNA-ERSDSGKYTLTLKNPA 63 (74)
T ss_pred CEEEEeeEeeeCCCeEEEEECCEEcCCC---CeEEEE-------------ECCCeEEEEECCC-CcCcCEEEEEEEECCC
Confidence 4789999999999999999999887433 121111 0012357999999 9999999999999999
Q ss_pred cceeeceEEEEE
Q psy14532 99 GRSSSQNVHISV 110 (258)
Q Consensus 99 ~~~~~~~~~l~v 110 (258)
|... ..+.|.|
T Consensus 64 G~~~-~~~~l~V 74 (74)
T cd05748 64 GEKS-ATINVKV 74 (74)
T ss_pred ccEE-EEEEEEC
Confidence 8876 6666653
No 95
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.51 E-value=1.9e-13 Score=81.87 Aligned_cols=74 Identities=38% Similarity=0.616 Sum_probs=53.9
Q ss_pred eEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEEEEEEeCCc
Q psy14532 20 VSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQG 99 (258)
Q Consensus 20 v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~~~~~~~ 99 (258)
+.|.|.+.|.|.|.+.|+|++..........++. .....+.|.|.++ +.+|+|.|.|.+.|..|
T Consensus 1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~---------------~~~~~~~L~I~~~-~~~D~G~Y~C~A~N~~G 64 (75)
T cd05763 1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMH---------------VMPEDDVFFIVDV-KIEDTGVYSCTAQNTAG 64 (75)
T ss_pred CEeEeecccccCCEEEEEeCCCccCCcccccceE---------------EecCCCEEEEeeC-CcccCEEEEEEEEcCCC
Confidence 4799999999999999999875322111111111 1123457999999 99999999999999988
Q ss_pred ceeeceEEEEE
Q psy14532 100 RSSSQNVHISV 110 (258)
Q Consensus 100 ~~~~~~~~l~v 110 (258)
... ..+.|.|
T Consensus 65 ~~~-~~~~l~V 74 (75)
T cd05763 65 SIS-ANATLTV 74 (75)
T ss_pred EEE-eeEEEEE
Confidence 766 7777766
No 96
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.51 E-value=2.5e-13 Score=84.68 Aligned_cols=75 Identities=25% Similarity=0.468 Sum_probs=62.4
Q ss_pred eccCCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcceEEec---CCeEEEEecccCCCCcEEEEEEEeCCCC
Q psy14532 116 VRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFP---NGTLLIENVQKDHDRGVYWCTATNKQGR 191 (258)
Q Consensus 116 ~~~~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~~~~g~y~C~~~~~~~~ 191 (258)
+..+....+..|+.+.|.|.+.+.|.+.+.|++++..+....++.+.. .+.|.|.++.. +|.|.|+|.+.|..|.
T Consensus 7 ~~~p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~-~D~G~Y~C~a~N~~G~ 84 (92)
T cd05747 7 LTKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFEISKVQM-SDEGNYTVVVENSEGK 84 (92)
T ss_pred cccCccEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCCCCcEEEEEcCCeeEEEECCCCc-ccCEeEEEEEEcCCCC
Confidence 344567789999999999999999999999999988776555554433 34799999987 9999999999999884
No 97
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.50 E-value=1.8e-13 Score=82.11 Aligned_cols=73 Identities=33% Similarity=0.610 Sum_probs=57.5
Q ss_pred CCcEEEEeeeCcccCceEEEEeCCcccCCCc--ceEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEe
Q psy14532 127 GEPLYLGCPVAGYPIESITWQKGVQQLPLNR--RQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISV 201 (258)
Q Consensus 127 g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~--~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v 201 (258)
|+.+.|.|.+.|.|.|.++|++++..+.... ......++.|.|.++.. +|+|.|+|.+.|..|. ....+.|.|
T Consensus 1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~~~~~~L~I~~~~~-~D~G~Y~C~a~N~~G~-~~~~~~l~V 75 (76)
T cd05867 1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHVSSGALILTDVQP-SDTAVYQCEARNRHGN-LLANAHVHV 75 (76)
T ss_pred CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEEeeCCEEEECCCCh-hhCEEEEEEEECCCCe-EEEEEEEEE
Confidence 6789999999999999999999998765432 12223567899999997 9999999999999885 344555554
No 98
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.50 E-value=1.7e-13 Score=80.60 Aligned_cols=69 Identities=28% Similarity=0.601 Sum_probs=53.6
Q ss_pred eEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEEEEEEeCCc
Q psy14532 20 VSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQG 99 (258)
Q Consensus 20 v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~~~~~~~ 99 (258)
++|.|.+.+.|.+.+.|+|++..+... + ......++|.|.++ +.+|+|.|+|.+.|..|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~~----~----------------~~~~~~~~L~I~~v-~~~D~G~Y~C~a~N~~G 59 (69)
T cd05725 1 VEFQCEVGGDPVPTVLWRKEDGELPKG----R----------------AEILDDKSLKIRNV-TAGDEGSYTCEAENMVG 59 (69)
T ss_pred CEEEEECccCCCCEEEEEECCccCCCC----c----------------EEEeeCCEEEECcC-ChhHCEEEEEEEEcCCC
Confidence 579999999999999999987654322 1 11124568999999 99999999999999998
Q ss_pred ceeeceEEEEE
Q psy14532 100 RSSSQNVHISV 110 (258)
Q Consensus 100 ~~~~~~~~l~v 110 (258)
... ..+.|.|
T Consensus 60 ~~~-~~~~l~V 69 (69)
T cd05725 60 KIE-ASASLTV 69 (69)
T ss_pred cEE-EEEEEEC
Confidence 776 6666553
No 99
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.50 E-value=1e-13 Score=80.04 Aligned_cols=65 Identities=20% Similarity=0.327 Sum_probs=52.6
Q ss_pred EEEEeeeCcccCceEEEEeCCcccCCCcceEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEe
Q psy14532 130 LYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISV 201 (258)
Q Consensus 130 ~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v 201 (258)
+.|.|.+.|.|.|.+.|+|++..+... ...+.|.|.++.. +|+|.|+|.|.|..+. .++.+.+.+
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~-----~~~~~L~i~~v~~-~D~G~YtC~a~N~~g~-~~~~~~~~l 65 (67)
T cd05863 1 VKLPVKVAAYPPPEFQWYKDGKLISGK-----HSQHSLQIKDVTE-ASAGTYTLVLWNSAAG-LEKRISLEL 65 (67)
T ss_pred CEEEEEEEEeCCCEEEEEECCEECccc-----CCcCEEEECCCCH-HHCEEEEEEEEECCcc-EEEEEEEEE
Confidence 478999999999999999999888532 1346899999997 9999999999999884 445555544
No 100
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.50 E-value=2.3e-13 Score=84.96 Aligned_cols=74 Identities=24% Similarity=0.483 Sum_probs=57.5
Q ss_pred cCCcEEEEeeeCcccCceEEEEeCCcccCCCcceE-EecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEE
Q psy14532 126 AGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQK-VFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHI 199 (258)
Q Consensus 126 ~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l 199 (258)
+|+.+.|.|.+.|.|.|.++|++++..+....... ...++.|.|.++...+|.|.|+|.|.|..|...+..+.|
T Consensus 18 ~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~~~~~~~~~g~L~i~~~~~~~D~G~Y~C~A~N~~G~~~S~~~~l 92 (94)
T cd05848 18 DEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSLIDGNLIISNPSEVKDSGRYQCLATNSIGSILSREALL 92 (94)
T ss_pred CCCEEEEEEEeeecCCCEEEEEECCeECccCCCceEEeeCCeEEEccCCccCcCEEEEEEEEcCCCeEEeccEEE
Confidence 47899999999999999999999998876433222 235678888887423899999999999998665555544
No 101
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.49 E-value=2e-13 Score=81.70 Aligned_cols=73 Identities=27% Similarity=0.464 Sum_probs=56.9
Q ss_pred CCcEEEEeeeCcccCceEEEEeCCcccCCCc--ceEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEe
Q psy14532 127 GEPLYLGCPVAGYPIESITWQKGVQQLPLNR--RQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISV 201 (258)
Q Consensus 127 g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~--~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v 201 (258)
|+.+.|.|.+.|.|.|.|+|++++..+.... .......+.|.|.++.. .|+|.|+|.|.|..|. ....+.|.|
T Consensus 1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~~~~~~~l~i~~v~~-~D~G~Y~C~A~N~~G~-~~~~~~l~v 75 (76)
T cd05868 1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRKVDGDTIIFSKVQE-RSSAVYQCNASNEYGY-LLANAFVNV 75 (76)
T ss_pred CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceEEecCCEEEECCCCH-hhCEEEEEEEEcCCCE-EEEEEEEEe
Confidence 6789999999999999999999998875322 12223445788889987 9999999999999984 445555554
No 102
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.49 E-value=1.3e-13 Score=82.00 Aligned_cols=69 Identities=32% Similarity=0.520 Sum_probs=53.7
Q ss_pred EEEEeeeCcccCceEEEEeCCcccCCC-cceEEecCC----eEEEEecccCCCCcEEEEEEEeCCCCCccceEEEE
Q psy14532 130 LYLGCPVAGYPIESITWQKGVQQLPLN-RRQKVFPNG----TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHIS 200 (258)
Q Consensus 130 ~~l~C~~~~~~~~~i~W~~~~~~~~~~-~~~~~~~~~----~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~ 200 (258)
+.|.|.+.|.|.|.++|++++..+... .++.+...+ .|.|.++.. +|+|.|+|.|.|..|. .+....|.
T Consensus 1 v~l~C~v~G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~A~N~~G~-~~~~a~L~ 74 (75)
T cd05893 1 VRLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATK-EDAGWYTVSAKNEAGI-VSCTARLD 74 (75)
T ss_pred CEEEEEEeEecCCEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCH-HHCEEEEEEEEcCCCE-EEEEEEEe
Confidence 479999999999999999998887643 344443332 589999997 9999999999999984 34445544
No 103
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=99.49 E-value=2.3e-13 Score=83.22 Aligned_cols=78 Identities=32% Similarity=0.577 Sum_probs=59.3
Q ss_pred eeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEE
Q psy14532 12 QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYW 91 (258)
Q Consensus 12 ~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~ 91 (258)
+.+..|+++.|.|.+.+.|.+.+.|++++..+..... .. ......+|.|.++ ..+|+|.|+
T Consensus 4 ~~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~---~~---------------~~~~~~~L~i~~v-~~~D~G~Y~ 64 (82)
T cd05856 4 IARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEI---GE---------------SRKKKWTLSLKNL-KPEDSGKYT 64 (82)
T ss_pred eeccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCcc---ce---------------ecCceEEEEEccC-ChhhCEEEE
Confidence 4467899999999999999999999999876643310 00 0012357999999 999999999
Q ss_pred EEEEeCCcceeeceEEEE
Q psy14532 92 CTATNKQGRSSSQNVHIS 109 (258)
Q Consensus 92 C~~~~~~~~~~~~~~~l~ 109 (258)
|.+.|..|... ..+.|.
T Consensus 65 C~a~N~~G~~~-~~~~v~ 81 (82)
T cd05856 65 CHVSNRAGEIN-ATYKVD 81 (82)
T ss_pred EEEEcCCccEE-EEEEEe
Confidence 99999988765 555554
No 104
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.49 E-value=2.3e-13 Score=82.76 Aligned_cols=78 Identities=24% Similarity=0.361 Sum_probs=60.1
Q ss_pred eceeeeecCCCceEEEEEEee-cCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCC
Q psy14532 8 KFIQQTLQPGPPVSLKCIATG-NPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHD 86 (258)
Q Consensus 8 ~~~~~~~~~g~~v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d 86 (258)
.+....+.+|++|+|.|.+.. .+...+.|+|++..+... ..+..|.|.++ +.+|
T Consensus 5 ~~p~~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~~------------------------~~~~~l~I~~~-~~~d 59 (83)
T cd05753 5 QVPSRVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKYS------------------------HSNSNLSIPQA-TLSD 59 (83)
T ss_pred ECCcceecCCCCEEEEeeCCCCCcceEEEEEECCeEcccc------------------------CCCceEEECcc-CHHH
Confidence 344557899999999999854 456689999998765321 02457999999 9999
Q ss_pred ceEEEEEEEeCCcceeeceEEEEE
Q psy14532 87 RGVYWCTATNKQGRSSSQNVHISV 110 (258)
Q Consensus 87 ~G~Y~C~~~~~~~~~~~~~~~l~v 110 (258)
+|.|+|.+.+..+...+..+.|+|
T Consensus 60 sG~Y~C~~~~~~~~~~s~~~~i~~ 83 (83)
T cd05753 60 SGSYHCSGIIGSYDYSSEPVSITV 83 (83)
T ss_pred CEEEEEEEEeCCceecCCCEEEEC
Confidence 999999999988766666666654
No 105
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.48 E-value=4.6e-13 Score=83.13 Aligned_cols=76 Identities=33% Similarity=0.476 Sum_probs=60.9
Q ss_pred CCcEEEEeeeCcccCceEEEEeCCccc--------CCCcceEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEE
Q psy14532 127 GEPLYLGCPVAGYPIESITWQKGVQQL--------PLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVH 198 (258)
Q Consensus 127 g~~~~l~C~~~~~~~~~i~W~~~~~~~--------~~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~ 198 (258)
|+.+.|.|.+.+.|.|.+.|++++... ....++.+..++.|.|.++.. +|+|.|+|.+.|..|. ....+.
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~~L~I~~v~~-~D~G~Y~C~a~N~~G~-~~~~~~ 78 (90)
T cd05726 1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQR-SDVGYYICQTLNVAGS-ILTKAY 78 (90)
T ss_pred CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEECCCCeEEEeeCCh-hhCEEEEEEEEcCCCc-eEEEEE
Confidence 678999999999999999999987643 123445555677899999997 9999999999999884 456677
Q ss_pred EEeecC
Q psy14532 199 ISVTVP 204 (258)
Q Consensus 199 l~v~~~ 204 (258)
|.|...
T Consensus 79 l~V~~~ 84 (90)
T cd05726 79 LEVTDV 84 (90)
T ss_pred EEEeec
Confidence 777653
No 106
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.48 E-value=5.3e-13 Score=79.74 Aligned_cols=73 Identities=33% Similarity=0.646 Sum_probs=56.1
Q ss_pred CCceEEEEEEeecCCCeEEEee-CCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEEEEEE
Q psy14532 17 GPPVSLKCIATGNPTPHISWKL-DGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTAT 95 (258)
Q Consensus 17 g~~v~l~C~~~~~~~~~v~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~~~ 95 (258)
|+.+.|.|.+.+.|.+.+.|++ ++..+... .+ .....+++|.|.++ ..+|.|.|+|.+.
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~---~~----------------~~~~~~~~L~i~~~-~~~D~G~Y~C~a~ 60 (74)
T cd05764 1 GQRATLRCKARGDPEPAIHWISPDGKLISNS---SR----------------TLVYDNGTLDILIT-TVKDTGSFTCIAS 60 (74)
T ss_pred CCeEEEEEEccCcCCCEEEEEeCCCEEecCC---Ce----------------EEEecCCEEEEEEC-ChhhCEEEEEEEE
Confidence 7899999999999999999997 55554322 11 11234678999999 9999999999999
Q ss_pred eCCcceeeceEEEEE
Q psy14532 96 NKQGRSSSQNVHISV 110 (258)
Q Consensus 96 ~~~~~~~~~~~~l~v 110 (258)
|..|... ..+.|.|
T Consensus 61 N~~G~~~-~~~~l~v 74 (74)
T cd05764 61 NAAGEAT-ATVELHI 74 (74)
T ss_pred CCCCeEE-EEEEEEC
Confidence 9998765 6666553
No 107
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.48 E-value=2.4e-13 Score=80.17 Aligned_cols=69 Identities=26% Similarity=0.409 Sum_probs=54.9
Q ss_pred EEEEeeeCcccCceEEEEeCCcccCCCcceEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEe
Q psy14532 130 LYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISV 201 (258)
Q Consensus 130 ~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v 201 (258)
+.|.|.+.|.|.|.+.|++++..+...... ....++|.|.++.. +|+|.|+|.+.|..+. ....+.+.+
T Consensus 1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~~~~-~~~~~~L~I~~v~~-~D~G~YtC~a~N~~g~-~~~~~~~~~ 69 (71)
T cd04976 1 VRLPVKVKAYPPPEIQWYKNGKLISEKNRT-KKSGHSLTIKDVTE-EDAGNYTVVLTNKQAK-LEKRLTFTL 69 (71)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCCCEE-EcCCCEEEECcCCH-HHCEEEEEEEEcCCcc-EEEEEEEEE
Confidence 468999999999999999999888765433 34567899999997 9999999999998874 334444443
No 108
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.48 E-value=6.9e-13 Score=84.36 Aligned_cols=83 Identities=33% Similarity=0.607 Sum_probs=61.2
Q ss_pred cCCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCC-----cceEEecCCeEEEEec-----ccCCCCcEEEEEEEe
Q psy14532 118 PMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLN-----RRQKVFPNGTLLIENV-----QKDHDRGVYWCTATN 187 (258)
Q Consensus 118 ~~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~-----~~~~~~~~~~l~i~~~-----~~~~~~g~y~C~~~~ 187 (258)
.+....+.+|+.+.|.|.+.|.|.|.+.|++++..+... .......++.+.+..+ .. +|+|.|+|.+.|
T Consensus 7 ~p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~D~G~Y~C~a~N 85 (100)
T cd07693 7 HPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGR-SDEGVYVCVAHN 85 (100)
T ss_pred cCceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCc-CcCEEEEEEEEc
Confidence 345677889999999999999999999999999877641 2222233444333222 44 899999999999
Q ss_pred CCCCCccceEEEEe
Q psy14532 188 KQGRSSSQNVHISV 201 (258)
Q Consensus 188 ~~~~~~~~~~~l~v 201 (258)
..|...+..+.|.|
T Consensus 86 ~~G~~~s~~~~l~v 99 (100)
T cd07693 86 SLGEAVSRNASLEV 99 (100)
T ss_pred cccceecceEEEEe
Confidence 99976777777665
No 109
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.48 E-value=4.5e-13 Score=83.35 Aligned_cols=79 Identities=29% Similarity=0.463 Sum_probs=61.5
Q ss_pred CCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcceEEe--cC--CeEEEEecccCCCCcEEEEEEEeCCCCCcc
Q psy14532 119 MGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVF--PN--GTLLIENVQKDHDRGVYWCTATNKQGRSSS 194 (258)
Q Consensus 119 ~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~--~~--~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~ 194 (258)
+..+.+.+|+.+.|.|.+.+.|.+.+.|++++..+....++... .. .+|.|.++.. +|+|.|+|.+.|..|. ..
T Consensus 8 p~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~-~D~G~Y~C~a~N~~G~-~~ 85 (92)
T cd05891 8 PDVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTS-EDSGKYSINVKNKYGG-ET 85 (92)
T ss_pred CCcEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCCh-hhCEEEEEEEEeCCCc-ee
Confidence 45677889999999999999999999999998877655443321 21 2689999987 9999999999999884 33
Q ss_pred ceEEE
Q psy14532 195 QNVHI 199 (258)
Q Consensus 195 ~~~~l 199 (258)
..+.|
T Consensus 86 ~~~~v 90 (92)
T cd05891 86 VDVTV 90 (92)
T ss_pred eEEEE
Confidence 44444
No 110
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.47 E-value=4.2e-13 Score=83.34 Aligned_cols=80 Identities=18% Similarity=0.326 Sum_probs=61.3
Q ss_pred CCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcceEE---ecCCeEEEEecccCCCCcEEEEEEEeCCCCCccc
Q psy14532 119 MGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKV---FPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQ 195 (258)
Q Consensus 119 ~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~---~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~ 195 (258)
+....+..|+.+.|.|.+.|.|.|.+.|++++..+........ .....|.|.++.. +|.|.|+|.|.|..|. ...
T Consensus 7 p~~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~g~Y~C~A~N~~G~-~~~ 84 (90)
T cd04972 7 PNATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITS-ETQTTVTCTAENPVGQ-ANV 84 (90)
T ss_pred CcCEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCCccEEEEecCCEEEEEEecCCc-ccCEEEEEEEECCCCc-eeE
Confidence 3445588999999999999999999999999987654332211 2234799999987 8999999999999884 444
Q ss_pred eEEEE
Q psy14532 196 NVHIS 200 (258)
Q Consensus 196 ~~~l~ 200 (258)
.+.|.
T Consensus 85 ~~~L~ 89 (90)
T cd04972 85 SVQVT 89 (90)
T ss_pred EEEEe
Confidence 45544
No 111
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.47 E-value=4.2e-13 Score=80.92 Aligned_cols=69 Identities=38% Similarity=0.629 Sum_probs=53.1
Q ss_pred CCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEEEEEEe
Q psy14532 17 GPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATN 96 (258)
Q Consensus 17 g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~~~~ 96 (258)
|+++.|.|.+.+.|.|.+.|++++..+... .++.+. .....+.|.|.++ ..+|+|.|+|.+.|
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~---~~~~~~-------------~~~~~~~L~I~~v-~~~D~G~Y~C~a~N 63 (78)
T cd05743 1 GETVEFTCVATGVPTPIINWRLNWGHVPDS---ARVSIT-------------SEGGYGTLTIRDV-KESDQGAYTCEAIN 63 (78)
T ss_pred CCEEEEEEEEEEecCCEEEEEECCeECCCC---CCEEEE-------------ECCCEEEEEECCC-ChHHCEEEEEEEEe
Confidence 789999999999999999999998766433 111111 0012357999999 99999999999999
Q ss_pred CCccee
Q psy14532 97 KQGRSS 102 (258)
Q Consensus 97 ~~~~~~ 102 (258)
..|...
T Consensus 64 ~~G~~~ 69 (78)
T cd05743 64 TRGMVF 69 (78)
T ss_pred cCCEEE
Confidence 988765
No 112
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.47 E-value=3.7e-13 Score=80.92 Aligned_cols=73 Identities=33% Similarity=0.534 Sum_probs=58.2
Q ss_pred CCcEEEEeeeCcccCceEEEEeCCcccCCCcc--eEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEe
Q psy14532 127 GEPLYLGCPVAGYPIESITWQKGVQQLPLNRR--QKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISV 201 (258)
Q Consensus 127 g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~--~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v 201 (258)
|+.+.|.|.+.|.|.|.+.|++++..+..... ......+.|.|.++.. +|.|.|+|.|.|..|. ....+.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~-~D~G~Y~C~A~N~~G~-~~~~~~l~V 75 (76)
T cd04978 1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDPRRRVDGGTLILSNVQP-NDTAVYQCNASNVHGY-LLANAFVHV 75 (76)
T ss_pred CCeEEEEEEceeeCCCEEEEEECCEECCCCCCcceEEccCCEEEECCCCh-hhCEEEEEEEEccCCe-EEEeEEEEE
Confidence 67899999999999999999999987754432 2334567899999997 9999999999999884 445555554
No 113
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.47 E-value=3.7e-13 Score=82.31 Aligned_cols=76 Identities=30% Similarity=0.449 Sum_probs=59.4
Q ss_pred CcEEEEeeeCcccCc--eEEEEeCCcccCCCc---ceEE----ecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEE
Q psy14532 128 EPLYLGCPVAGYPIE--SITWQKGVQQLPLNR---RQKV----FPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVH 198 (258)
Q Consensus 128 ~~~~l~C~~~~~~~~--~i~W~~~~~~~~~~~---~~~~----~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~ 198 (258)
+++.|.|.+.|.|.+ .++|++++..+.... ++.. ...++|.|.+++. .|+|.|+|.|.|..+ ..+..+.
T Consensus 1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~YtC~A~n~~g-~~~~~~~ 78 (85)
T cd05854 1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQL-SHAGTYTCTAQTVVD-SASASAT 78 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCCh-hhCeEEEEEEecCCC-CEEEEEE
Confidence 468999999998876 689999998765321 2211 1346899999998 999999999999988 5667888
Q ss_pred EEeecCC
Q psy14532 199 ISVTVPP 205 (258)
Q Consensus 199 l~v~~~p 205 (258)
|.|..+|
T Consensus 79 L~V~~~P 85 (85)
T cd05854 79 LVVRGPP 85 (85)
T ss_pred EEEECCC
Confidence 8888765
No 114
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=99.47 E-value=1.3e-12 Score=81.35 Aligned_cols=83 Identities=29% Similarity=0.494 Sum_probs=62.0
Q ss_pred CcceeeceeeeecCC---CceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEe
Q psy14532 3 PQLIYKFIQQTLQPG---PPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIE 79 (258)
Q Consensus 3 p~~~~~~~~~~~~~g---~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~ 79 (258)
|.|..+|.++.+.++ +++.|.|.+.+.|.+.++|++++..+..... ..+ ...++.|.|.
T Consensus 2 P~f~~~p~~~~~~~~~~~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~-~~~-----------------~~~~~~L~i~ 63 (91)
T cd04967 2 PVFEEQPDDTIFPEESDEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPD-SRY-----------------SLVGGNLVIS 63 (91)
T ss_pred CeeEeCCCCEEccCCCCCCEEEEEEeeeEcCCCEEEEEECCEECCCCCC-CCE-----------------EEECCEEEEe
Confidence 677778887766554 5799999999999999999999987743210 111 1235689998
Q ss_pred ecccCCCceEEEEEEEeCCcceee
Q psy14532 80 NVQKDHDRGVYWCTATNKQGRSSS 103 (258)
Q Consensus 80 ~~~~~~d~G~Y~C~~~~~~~~~~~ 103 (258)
++....|+|.|+|.+.|..|...+
T Consensus 64 ~~~~~~d~G~Y~C~a~N~~G~~~S 87 (91)
T cd04967 64 NPSKAKDAGRYQCLASNIVGTVLS 87 (91)
T ss_pred cCCccCCCEEEEEEEEcCCCEEEe
Confidence 882358999999999999886653
No 115
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.47 E-value=5.4e-13 Score=79.68 Aligned_cols=72 Identities=29% Similarity=0.498 Sum_probs=57.5
Q ss_pred CCcEEEEeeeCcccCceEEEEe-CCcccCCCcceEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEE
Q psy14532 127 GEPLYLGCPVAGYPIESITWQK-GVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHIS 200 (258)
Q Consensus 127 g~~~~l~C~~~~~~~~~i~W~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~ 200 (258)
|+.+.|.|.+.|.|.|.+.|++ ++..+....+......++|.|.++.. +|.|.|+|.|.|..|. .+..+.|.
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~-~D~G~Y~C~a~N~~G~-~~~~~~l~ 73 (74)
T cd05764 1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLVYDNGTLDILITTV-KDTGSFTCIASNAAGE-ATATVELH 73 (74)
T ss_pred CCeEEEEEEccCcCCCEEEEEeCCCEEecCCCeEEEecCCEEEEEECCh-hhCEEEEEEEECCCCe-EEEEEEEE
Confidence 6789999999999999999997 56555554555556778999999987 9999999999999884 44445444
No 116
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.47 E-value=7.3e-13 Score=82.75 Aligned_cols=73 Identities=29% Similarity=0.533 Sum_probs=56.8
Q ss_pred CCcEEEEeeeCcccCceEEEEeCCcccCCC--cceEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEE
Q psy14532 127 GEPLYLGCPVAGYPIESITWQKGVQQLPLN--RRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHIS 200 (258)
Q Consensus 127 g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~--~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~ 200 (258)
|+.+.|.|.+.|.|.+.++|++++..+... .++. ..++.|.|.++....|.|.|+|.|.|..|...+..+.|.
T Consensus 19 g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~-~~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l~ 93 (94)
T cd05850 19 EEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYT-LVAGNLVINNPQKARDAGSYQCLAINRCGTVVSREANLR 93 (94)
T ss_pred CCeEEEEeEceeCCCCEEEEEECCEECccCCCceEE-EECCeEEEccCCccCcCEEEEEEEEcCcCcEEEEEEEEe
Confidence 468999999999999999999999887533 2333 346788887754338999999999999997666665543
No 117
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.47 E-value=1e-12 Score=82.94 Aligned_cols=94 Identities=20% Similarity=0.277 Sum_probs=65.6
Q ss_pred CCcceeeceeeeecCCCceEEEEEEeecCCC-eEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEee
Q psy14532 2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTP-HISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIEN 80 (258)
Q Consensus 2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~ 80 (258)
||.|. .+....+.+|+++.|.|.+.+.|.| .+.|++++..+..... .++.+..... . ....++|.|.+
T Consensus 2 pp~i~-~~~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~-~r~~i~~~~~--------~-~~~~s~L~I~~ 70 (98)
T cd05758 2 PPIIT-SEATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSS-GRYTVETDPS--------P-GGVLSTLTISN 70 (98)
T ss_pred CCeEc-CCCcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCC-CCEEEEEecC--------C-CceEEEEEECC
Confidence 67775 4567788999999999999999998 6999999987764321 1222211000 0 00123699999
Q ss_pred cccC-CCceEEEEEEEeCCcceeeceEEE
Q psy14532 81 VQKD-HDRGVYWCTATNKQGRSSSQNVHI 108 (258)
Q Consensus 81 ~~~~-~d~G~Y~C~~~~~~~~~~~~~~~l 108 (258)
+ .. +|.|.|.|.|.|..|... ..+.|
T Consensus 71 v-~~~d~~G~Y~C~A~N~~G~~~-~~~~L 97 (98)
T cd05758 71 T-QESDFQTSYNCTAWNSFGSGT-AIISL 97 (98)
T ss_pred c-cccccceeEEEEEEcCCCccc-EEEEe
Confidence 9 77 559999999999998766 44443
No 118
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=99.47 E-value=7.5e-13 Score=83.61 Aligned_cols=102 Identities=19% Similarity=0.269 Sum_probs=68.9
Q ss_pred eeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecc-cceeeccccccceeeeeCCcEEEeecccC
Q psy14532 6 IYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIG-EARVQQLPLNRRQKVFPNGTLLIENVQKD 84 (258)
Q Consensus 6 ~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~i~~~~~~ 84 (258)
..++.+..+.+|++|.|.|.........+.|+|+..... ......+... ........+..|..+..+++|.|.++ +.
T Consensus 2 tie~~p~~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~-~~~I~~y~~~~~~~~~gp~~~gR~~~~~ngSL~I~~v-~~ 79 (105)
T cd05774 2 TIELVPPQVAEGENVLLLVHNLPENLLAYAWYKGKTVSP-NFLIASYIISTNSSTPGPAYSGRETIYPNGSLLIQNV-TQ 79 (105)
T ss_pred eEeccCCcccCCCCEEEEecCCCCCceEEEEEcCCCCCC-CEEEEEEECCCcccccCcccCCcEEEeCCCcEEEecC-Cc
Confidence 345667788999999999976544455899999632111 1011111111 12233445678888999999999999 99
Q ss_pred CCceEEEEEEEeCCcceeeceEEEE
Q psy14532 85 HDRGVYWCTATNKQGRSSSQNVHIS 109 (258)
Q Consensus 85 ~d~G~Y~C~~~~~~~~~~~~~~~l~ 109 (258)
.|+|.|+|.+.+.........+.|.
T Consensus 80 ~D~G~Y~~~v~~~~~~~~~~~v~l~ 104 (105)
T cd05774 80 KDTGFYTLQTITTNFQVEQATVHLQ 104 (105)
T ss_pred ccCEEEEEEEEeCCccEEEEEEEEE
Confidence 9999999999987754443555554
No 119
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.46 E-value=7.8e-13 Score=79.85 Aligned_cols=69 Identities=29% Similarity=0.521 Sum_probs=57.4
Q ss_pred CCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcceEEecCCeEEEEecccCCCCcEEEEEEEeCCCC
Q psy14532 120 GNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGR 191 (258)
Q Consensus 120 ~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~ 191 (258)
....+.+|+.+.|.|.+.+. .+.+.|++++..+....+..+ ..+.|.|.++.. +|+|.|+|.+.|..+.
T Consensus 2 ~~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~~~~~~-~~~~L~I~~~~~-~DsG~Y~C~a~n~~g~ 70 (79)
T cd04973 2 ESYSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGENNRTRI-TGEEVQIKDAVP-RDSGLYACVTSSPSGS 70 (79)
T ss_pred CcEEecCCCCEEEEEEecCC-CceEEEeeCCcCCCCCceEEE-eCCEEEECCCCh-hhCEEEEEEEeCCCCc
Confidence 34567899999999999885 568999999998877666655 356899999997 9999999999998764
No 120
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.46 E-value=7.5e-13 Score=82.07 Aligned_cols=85 Identities=24% Similarity=0.341 Sum_probs=56.1
Q ss_pred CCceEEEEEEeecCCCeEEEeeCCE----eCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEEE
Q psy14532 17 GPPVSLKCIATGNPTPHISWKLDGY----PLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWC 92 (258)
Q Consensus 17 g~~v~l~C~~~~~~~~~v~W~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C 92 (258)
|++++|.|.+.+.|.|.|+|+|++. .+..... ...... .. ............|.|.++ +.+|+|.|+|
T Consensus 1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~-~~~~~~-----~~-~~~~~~~~~~~~L~I~~v-~~~D~G~Y~C 72 (90)
T cd04974 1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGL-PYVTVL-----KV-AGINTTDNESEVLYLRNV-SFDDAGEYTC 72 (90)
T ss_pred CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCC-ceEEEE-----Ee-cCCcccccccceEEEecc-ccccCcEEEE
Confidence 7899999999999999999999642 2111100 000000 00 000001112347899999 9999999999
Q ss_pred EEEeCCcceeeceEEEEE
Q psy14532 93 TATNKQGRSSSQNVHISV 110 (258)
Q Consensus 93 ~~~~~~~~~~~~~~~l~v 110 (258)
.|.|..|... .++.|.|
T Consensus 73 ~A~N~~G~~~-~sa~L~V 89 (90)
T cd04974 73 LAGNSIGPSH-HSAWLTV 89 (90)
T ss_pred EeecccCccc-CCEEEEe
Confidence 9999999877 7777776
No 121
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.46 E-value=4.6e-13 Score=82.21 Aligned_cols=76 Identities=28% Similarity=0.433 Sum_probs=59.5
Q ss_pred CcEEEEeeeCcccCc--eEEEEeCCcccCCCcc-------eEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEE
Q psy14532 128 EPLYLGCPVAGYPIE--SITWQKGVQQLPLNRR-------QKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVH 198 (258)
Q Consensus 128 ~~~~l~C~~~~~~~~--~i~W~~~~~~~~~~~~-------~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~ 198 (258)
+.+.|.|.+.+.|.+ .+.|++++..+..... ......+.|.|.+++. .|+|.|+|.|.|..+. .+..+.
T Consensus 1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~a~n~~g~-~~~~~~ 78 (85)
T cd04970 1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQL-KHAGKYTCTAQTVVDS-LSASAD 78 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCH-HhCeeeEEEEecCCCc-EEEEEE
Confidence 468999999998876 6799999887653321 1123457899999998 9999999999998874 567788
Q ss_pred EEeecCC
Q psy14532 199 ISVTVPP 205 (258)
Q Consensus 199 l~v~~~p 205 (258)
|.|..+|
T Consensus 79 l~V~~pP 85 (85)
T cd04970 79 LIVRGPP 85 (85)
T ss_pred EEEECCC
Confidence 8888765
No 122
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.46 E-value=1e-12 Score=82.93 Aligned_cols=84 Identities=24% Similarity=0.464 Sum_probs=61.8
Q ss_pred eeccCCCcceecCCcEEEEeeeCcccCceEEEEeC--CcccCC-----CcceEEec---CCeEEEEecccCCCCcEEEEE
Q psy14532 115 FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKG--VQQLPL-----NRRQKVFP---NGTLLIENVQKDHDRGVYWCT 184 (258)
Q Consensus 115 ~~~~~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~--~~~~~~-----~~~~~~~~---~~~l~i~~~~~~~~~g~y~C~ 184 (258)
.+..+....+.+|+.+.|.|.+.|.|.|.+.|+++ +..+.. ..++.+.. ...|.|.++.. +|+|.|+|.
T Consensus 4 ~i~~~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~-~D~G~Y~C~ 82 (98)
T cd05870 4 HIIQLKNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKL-SDSGRYDCE 82 (98)
T ss_pred EEEeeccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCc-CCCEEEEEE
Confidence 33445667888999999999999999999999994 332221 12333322 34799999997 999999999
Q ss_pred EEeCCCCCccceEEEE
Q psy14532 185 ATNKQGRSSSQNVHIS 200 (258)
Q Consensus 185 ~~~~~~~~~~~~~~l~ 200 (258)
|.|..|. ....+.|.
T Consensus 83 A~N~~G~-~~~~~~l~ 97 (98)
T cd05870 83 AASRIGG-HQKSMYLD 97 (98)
T ss_pred EeccCCc-ceeEEEEe
Confidence 9999984 44555554
No 123
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.46 E-value=7.2e-13 Score=80.17 Aligned_cols=76 Identities=22% Similarity=0.347 Sum_probs=60.1
Q ss_pred CcEEEEeeeCc--ccCceEEEEeCCcccCCC---cceEE----ecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEE
Q psy14532 128 EPLYLGCPVAG--YPIESITWQKGVQQLPLN---RRQKV----FPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVH 198 (258)
Q Consensus 128 ~~~~l~C~~~~--~~~~~i~W~~~~~~~~~~---~~~~~----~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~ 198 (258)
+++.|.|.+.+ .+++.+.|++++..+... .++.. ...+.|.|.+++. .|+|.|+|.|.+..+ ..+....
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~-~dsG~YtC~a~n~~~-~~~a~a~ 78 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQL-KHAGKYVCMVQTSVD-KLSAAAD 78 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCH-HHCEEEEEEEEcccC-ceEEEEE
Confidence 46899999976 457799999999988632 23333 2456899999997 999999999999987 4667788
Q ss_pred EEeecCC
Q psy14532 199 ISVTVPP 205 (258)
Q Consensus 199 l~v~~~p 205 (258)
|.|..||
T Consensus 79 L~V~~pP 85 (85)
T cd05853 79 LIVRGPP 85 (85)
T ss_pred EEEecCC
Confidence 8888776
No 124
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=99.45 E-value=6.9e-13 Score=79.65 Aligned_cols=72 Identities=32% Similarity=0.660 Sum_probs=52.9
Q ss_pred eEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccC----CCceEEEEEEE
Q psy14532 20 VSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKD----HDRGVYWCTAT 95 (258)
Q Consensus 20 v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~----~d~G~Y~C~~~ 95 (258)
+.|.|.+.|.|.|.++|+|++..+..... .++.. ...+++|.|.++ .. +|+|.|.|.+.
T Consensus 1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~-~~~~~---------------~~~~g~L~i~~~-~~~~~~~d~G~Y~C~A~ 63 (77)
T cd05733 1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKD-PRVTM---------------KPDSGTLVIDNM-NGGRAEDYEGEYQCYAS 63 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCCCC-CCEEE---------------eCCCCEEEEecc-CCCCCcCCCEEEEEEEE
Confidence 57999999999999999999987754311 11111 123678999887 53 68999999999
Q ss_pred eCCcceeeceEEE
Q psy14532 96 NKQGRSSSQNVHI 108 (258)
Q Consensus 96 ~~~~~~~~~~~~l 108 (258)
|..|...+..+.|
T Consensus 64 N~~G~~~s~~~~l 76 (77)
T cd05733 64 NELGTAISNEIHL 76 (77)
T ss_pred cCCCcEEccccEE
Confidence 9999776555544
No 125
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.45 E-value=6e-13 Score=79.45 Aligned_cols=70 Identities=29% Similarity=0.548 Sum_probs=55.7
Q ss_pred cEEEEeeeCcccCceEEEEeCCcccCCCcceEEec---CCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEE
Q psy14532 129 PLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFP---NGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHIS 200 (258)
Q Consensus 129 ~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~ 200 (258)
.+.|.|.+.|.|.|.+.|++++..+....+..+.. ...|.|.++.. +|+|.|+|.|.|..|. .+..+.|.
T Consensus 1 ~~~l~c~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~-~D~G~Y~C~a~N~~G~-~~~~~~l~ 73 (74)
T cd05748 1 SVRLEVPISGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAER-SDSGKYTLTLKNPAGE-KSATINVK 73 (74)
T ss_pred CEEEEeeEeeeCCCeEEEEECCEEcCCCCeEEEEECCCeEEEEECCCCc-CcCEEEEEEEECCCcc-EEEEEEEE
Confidence 37899999999999999999998886555554432 34799999997 9999999999999884 44555544
No 126
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=99.45 E-value=7.7e-13 Score=78.41 Aligned_cols=70 Identities=41% Similarity=0.676 Sum_probs=54.0
Q ss_pred eEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEEEEEEeCCc
Q psy14532 20 VSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQG 99 (258)
Q Consensus 20 v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~~~~~~~ 99 (258)
+.|.|.+.|.|.|.+.|+|++..+... +.. .....++|.|.++ +.+|+|.|+|.+.|..|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~~----~~~---------------~~~~~~~L~i~~v-~~~D~G~Y~C~a~N~~G 60 (71)
T cd05731 1 LLLECIAEGLPTPEISWIKIGGELPAD----RTK---------------FENFNKTLKIDNV-SEEDDGEYRCTASNSLG 60 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCeECCCC----cee---------------EecCCCEEEECCC-CHHHCEEEEEEEEeCCc
Confidence 579999999999999999988765432 000 0112457999999 99999999999999998
Q ss_pred ceeeceEEEEE
Q psy14532 100 RSSSQNVHISV 110 (258)
Q Consensus 100 ~~~~~~~~l~v 110 (258)
... ..+.|.|
T Consensus 61 ~~~-~~~~l~V 70 (71)
T cd05731 61 SAR-HTISVTV 70 (71)
T ss_pred eEE-EEEEEEE
Confidence 766 6666665
No 127
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.45 E-value=1.1e-12 Score=82.74 Aligned_cols=85 Identities=29% Similarity=0.497 Sum_probs=63.1
Q ss_pred CeeccCCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCC-----cceEEec---CCeEEEEecccCCCCcEEEEEE
Q psy14532 114 PFVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLN-----RRQKVFP---NGTLLIENVQKDHDRGVYWCTA 185 (258)
Q Consensus 114 ~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~-----~~~~~~~---~~~l~i~~~~~~~~~g~y~C~~ 185 (258)
|.+.......+.+|+.+.|.|.+.|.|.+.+.|++++..+... .+..+.. .+.|.|.++.. +|.|.|+|.+
T Consensus 3 P~i~~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~a 81 (96)
T cd05732 3 PKITYLENQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQL-TDAGRYDCEA 81 (96)
T ss_pred ccceecCceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCc-CcCEEeEEEE
Confidence 3344455677889999999999999999999999987655432 1222222 24799999997 9999999999
Q ss_pred EeCCCCCccceEEEE
Q psy14532 186 TNKQGRSSSQNVHIS 200 (258)
Q Consensus 186 ~~~~~~~~~~~~~l~ 200 (258)
.|..|. .+..+.|.
T Consensus 82 ~N~~G~-~~~s~~l~ 95 (96)
T cd05732 82 SNRIGG-DQQSMYLE 95 (96)
T ss_pred EeCCCC-cEEEEEEe
Confidence 999985 44555554
No 128
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.44 E-value=9.1e-13 Score=81.05 Aligned_cols=78 Identities=28% Similarity=0.535 Sum_probs=60.1
Q ss_pred cceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcce---EE-ecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceE
Q psy14532 122 VSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQ---KV-FPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNV 197 (258)
Q Consensus 122 ~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~---~~-~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~ 197 (258)
..+..|+.+.|.|.+.|.|.+.+.|++++..+...... .. .....|.|.++.. +|+|.|+|.+.|..|. ....+
T Consensus 4 ~~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~-~D~G~Y~C~a~N~~G~-~~~~~ 81 (85)
T cd05857 4 HAVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVP-SDKGNYTCVVENEYGS-INHTY 81 (85)
T ss_pred EEcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCc-ccCEEEEEEEEeCCCE-EEEEE
Confidence 35678999999999999999999999999887654332 11 2234688889987 9999999999999884 44555
Q ss_pred EEEe
Q psy14532 198 HISV 201 (258)
Q Consensus 198 ~l~v 201 (258)
.|.|
T Consensus 82 ~l~v 85 (85)
T cd05857 82 HLDV 85 (85)
T ss_pred EEEC
Confidence 5543
No 129
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.44 E-value=8.6e-13 Score=80.39 Aligned_cols=81 Identities=31% Similarity=0.468 Sum_probs=55.2
Q ss_pred CCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEEEEEEe
Q psy14532 17 GPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATN 96 (258)
Q Consensus 17 g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~~~~ 96 (258)
|+++.|.|.+.+.|.+.+.|+|++..-.. ..+... ....+......++|.|.++ +.+|+|.|+|.+.|
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~------~~~~~~-----~~~~~~~~~~~~~L~I~~~-~~~D~G~Y~C~a~N 68 (81)
T cd05765 1 GETASFHCDVTGRPPPEITWEKQVHGKEN------LIMRPN-----HVRGNVVVTNIGQLVIYNA-QPQDAGLYTCTARN 68 (81)
T ss_pred CCcEEEEeeccccCCCcEEEEecCCCCcc------eeecCC-----cccCCEEEccccEEEEccC-CcccCEEEEEEEec
Confidence 78999999999999999999997321000 000000 0000111223468999999 99999999999999
Q ss_pred CCcceeeceEEEEE
Q psy14532 97 KQGRSSSQNVHISV 110 (258)
Q Consensus 97 ~~~~~~~~~~~l~v 110 (258)
..|... ..+.|.|
T Consensus 69 ~~G~~~-~~~~l~v 81 (81)
T cd05765 69 SGGLLR-ANFPLSV 81 (81)
T ss_pred CCceEE-EEEEEeC
Confidence 998766 6666654
No 130
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=99.44 E-value=1.5e-12 Score=78.04 Aligned_cols=72 Identities=26% Similarity=0.505 Sum_probs=51.8
Q ss_pred eEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeeccc----CCCceEEEEEEE
Q psy14532 20 VSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQK----DHDRGVYWCTAT 95 (258)
Q Consensus 20 v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~----~~d~G~Y~C~~~ 95 (258)
+.|.|.+.|.|.|.++|+|++..+.... ..++. ....+++|.|.++ . .+|+|.|.|.+.
T Consensus 1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~-~~~~~---------------~~~~~~~L~i~~~-~~~~~~~d~G~Y~C~A~ 63 (77)
T cd05875 1 IIIECEAKGNPVPTFQWTRNGKFFNVAK-DPRVS---------------MRRRSGTLVIDFS-GGGRPEDYEGEYQCFAR 63 (77)
T ss_pred CEEEEeccccCCCEEEEEECCEEccCcC-CCcEE---------------EeCCCceEEEecc-CCCCCCCCCEEEEEEEE
Confidence 5799999999999999999998764321 11111 1123578888876 3 346999999999
Q ss_pred eCCcceeeceEEE
Q psy14532 96 NKQGRSSSQNVHI 108 (258)
Q Consensus 96 ~~~~~~~~~~~~l 108 (258)
|..|...+..+.|
T Consensus 64 N~~G~~~s~~~~~ 76 (77)
T cd05875 64 NNLGTALSNKILL 76 (77)
T ss_pred eccceEEEEEEEE
Confidence 9999776565554
No 131
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=99.44 E-value=1.4e-12 Score=80.78 Aligned_cols=87 Identities=22% Similarity=0.363 Sum_probs=63.0
Q ss_pred eceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCc
Q psy14532 8 KFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDR 87 (258)
Q Consensus 8 ~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~ 87 (258)
.+..+.+.+|+++.|.|.+.+ |.+.+.|++++..+..... ... ........|.|.++ ..+|+
T Consensus 2 ~~~~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~---------------~~~-~~~~~~~~L~I~~~-~~~D~ 63 (89)
T cd04979 2 EEKVVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEE---------------PEE-RLLVTEDGLLIRSV-SPADA 63 (89)
T ss_pred cceEEEEECCCcEEEEEeCCC-CCceEEEEECCcccccccC---------------cCc-eEEEcCCCEEEccC-CHHHC
Confidence 355677899999999999876 7789999999876543310 000 01112346999999 99999
Q ss_pred eEEEEEEEeCCcceeeceEEEEEec
Q psy14532 88 GVYWCTATNKQGRSSSQNVHISVTG 112 (258)
Q Consensus 88 G~Y~C~~~~~~~~~~~~~~~l~v~~ 112 (258)
|.|+|.+.+..+.....++.|.|..
T Consensus 64 G~Y~C~a~~~~~~~~~~~~~l~V~~ 88 (89)
T cd04979 64 GVYTCQSVEHGFKQTLATYSLNVLE 88 (89)
T ss_pred EEEEEEEecCccceeEeEEEEEEec
Confidence 9999999987665555777777753
No 132
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.44 E-value=7.2e-13 Score=79.04 Aligned_cols=69 Identities=35% Similarity=0.590 Sum_probs=53.2
Q ss_pred EEEEeeeCcccCceEEEEeCCcccCCC-cceEEecC--C--eEEEEecccCCCCcEEEEEEEeCCCCCccceEEEE
Q psy14532 130 LYLGCPVAGYPIESITWQKGVQQLPLN-RRQKVFPN--G--TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHIS 200 (258)
Q Consensus 130 ~~l~C~~~~~~~~~i~W~~~~~~~~~~-~~~~~~~~--~--~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~ 200 (258)
+.|.|.+.|.|.|.+.|++++..+... .++.+... + +|.|.++.. +|+|.|+|.+.|..|. .+..+.|.
T Consensus 1 v~L~C~v~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~-~D~G~Y~C~a~N~~G~-~~~~~~l~ 74 (75)
T cd05744 1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANK-EDAGWYTVSAVNEAGV-VSCNARLD 74 (75)
T ss_pred CEEEEEEeecCCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCc-ccCEEEEEEEEcCCCc-EEEEEEEe
Confidence 479999999999999999999887643 34443322 2 599999987 9999999999999984 43445444
No 133
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.44 E-value=4.1e-13 Score=78.68 Aligned_cols=60 Identities=22% Similarity=0.257 Sum_probs=48.6
Q ss_pred EEEEeeeCcccCceEEEEeCCcccCCCcceEEecCCeEEEEecccCCCCcEEEEEEEeCCC
Q psy14532 130 LYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQG 190 (258)
Q Consensus 130 ~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~ 190 (258)
+.|.|.+.|.|.|.+.|++++.++............+|.|.++.. +|+|.|+|.+.+...
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~L~I~~v~~-~D~G~YtC~a~~~~~ 60 (72)
T cd07702 1 YRLTPKVKAFPAPEVIWLKDGLPAAEKCSRYHVDGYSLVIKDVTE-EDAGIYTILLGIKQY 60 (72)
T ss_pred CeEEeeEEEcCCCeEEEEECCEECCCCCcEEEeCCCEEEECcCCH-HHCEEEEEEEEcccc
Confidence 368999999999999999999887654222233445899999997 999999999999753
No 134
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=99.44 E-value=1.4e-12 Score=81.17 Aligned_cols=79 Identities=30% Similarity=0.517 Sum_probs=58.9
Q ss_pred CCcceecCCcEEEEeeeCcccCceEEEEe-CCcccCCCcceEEecC----CeEEEEecccCCCCcEEEEEEEeCCCCCcc
Q psy14532 120 GNVSAIAGEPLYLGCPVAGYPIESITWQK-GVQQLPLNRRQKVFPN----GTLLIENVQKDHDRGVYWCTATNKQGRSSS 194 (258)
Q Consensus 120 ~~~~~~~g~~~~l~C~~~~~~~~~i~W~~-~~~~~~~~~~~~~~~~----~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~ 194 (258)
....+..|+.+.|.|.+.|.|. .+.|++ ++..+....+.....+ .+|.|.++.. +|+|.|+|.|.|..+....
T Consensus 8 ~~~~v~~G~~~~l~C~~~G~p~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~A~N~~g~~~~ 85 (92)
T cd04977 8 SQGEISVGESKFFLCQVIGEPK-DISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANI-EDAGIYKCVATDAKGTESE 85 (92)
T ss_pred CcEEECCCCeEEEEEEeEeeCC-eEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCc-ccCEEEEEEEEcCCCCcce
Confidence 4466889999999999999864 999998 5554443333333222 3799999997 9999999999998765555
Q ss_pred ceEEEE
Q psy14532 195 QNVHIS 200 (258)
Q Consensus 195 ~~~~l~ 200 (258)
.++.|.
T Consensus 86 ~sv~l~ 91 (92)
T cd04977 86 ATVNLK 91 (92)
T ss_pred eEEEEE
Confidence 666554
No 135
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.44 E-value=9.4e-13 Score=79.65 Aligned_cols=71 Identities=32% Similarity=0.677 Sum_probs=55.7
Q ss_pred EEEEeeeCcccCceEEEEeCCcccC--------CCcceEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEe
Q psy14532 130 LYLGCPVAGYPIESITWQKGVQQLP--------LNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISV 201 (258)
Q Consensus 130 ~~l~C~~~~~~~~~i~W~~~~~~~~--------~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v 201 (258)
++|.|.+.|.|.|.++|++++.... ...+.....+++|.|.++.. +|.|.|.|.|.|..|...++.+.|.|
T Consensus 1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~I~~v~~-~D~G~Y~C~a~N~~G~~~s~~~~l~~ 79 (79)
T cd05734 1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVLE-EDSGYYLCKVSNDVGADASKSMVLTV 79 (79)
T ss_pred CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEEecCCeEEECcCCc-ccCEEEEEEEEeCCCCCCceEEEEeC
Confidence 4799999999999999999643211 22344445678899999987 99999999999999877677776654
No 136
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.44 E-value=1.8e-12 Score=83.22 Aligned_cols=79 Identities=28% Similarity=0.405 Sum_probs=61.1
Q ss_pred cCCcEEEEeeeCcccCceEEEEeCCcccCCC-cceEEe-------cCCeEEEEecccCCCCcEEEEEEEeCCCCCccceE
Q psy14532 126 AGEPLYLGCPVAGYPIESITWQKGVQQLPLN-RRQKVF-------PNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNV 197 (258)
Q Consensus 126 ~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~-~~~~~~-------~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~ 197 (258)
.|..+.|.|.+.|.|.+.+.|++++..+... .++... ..+.|.|.++...+|.|.|+|.|.|..|. ....+
T Consensus 22 ~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G~-~~~~i 100 (109)
T cd05773 22 GSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALDYALFTCTAHNSLGE-DSLDI 100 (109)
T ss_pred CCCEEEEEEECcccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCCCEEEEEEEEeCCcc-CcEEE
Confidence 4678999999999999999999999877532 232211 12468898886338999999999999985 56778
Q ss_pred EEEeecCC
Q psy14532 198 HISVTVPP 205 (258)
Q Consensus 198 ~l~v~~~p 205 (258)
.|.+..+|
T Consensus 101 ~L~~~~~p 108 (109)
T cd05773 101 QLVSTSRP 108 (109)
T ss_pred EEEecCCC
Confidence 88887766
No 137
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.44 E-value=6.3e-13 Score=77.75 Aligned_cols=59 Identities=27% Similarity=0.353 Sum_probs=49.9
Q ss_pred EEEEeeeCcccCceEEEEeCCcccCCCcceEEecCCeEEEEecccCCCCcEEEEEEEeCCCC
Q psy14532 130 LYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGR 191 (258)
Q Consensus 130 ~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~ 191 (258)
+.|.|.+.|.|.|.+.|++++..+..... ......|.|.++.. +|+|.|+|.|.|..|.
T Consensus 1 ~~~~c~v~G~P~P~v~W~k~g~~l~~~~~--~~~~~~L~I~~v~~-~D~G~YtC~a~N~~G~ 59 (70)
T cd05864 1 VKIPVKYYGYPPPEVKWYKNGQLIVLNHT--FKRGVHLTIYEVTE-KDAGNYTVVLTNPITK 59 (70)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCCCE--EccCCEEEECcCCH-HHCEEEEEEEEECCCc
Confidence 36899999999999999999998865433 33456799999987 9999999999999874
No 138
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.44 E-value=1.6e-12 Score=76.21 Aligned_cols=62 Identities=26% Similarity=0.382 Sum_probs=48.4
Q ss_pred eEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEEEEEEeCCc
Q psy14532 20 VSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQG 99 (258)
Q Consensus 20 v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~~~~~~~ 99 (258)
+.|.|.+.|.|.|++.|+|++.++.... ..+. ....+|.|.++ ..+|+|.|+|.+.+...
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~--~~~~-----------------~~~~~L~I~~v-~~~D~G~YtC~a~~~~~ 60 (72)
T cd07702 1 YRLTPKVKAFPAPEVIWLKDGLPAAEKC--SRYH-----------------VDGYSLVIKDV-TEEDAGIYTILLGIKQY 60 (72)
T ss_pred CeEEeeEEEcCCCeEEEEECCEECCCCC--cEEE-----------------eCCCEEEECcC-CHHHCEEEEEEEEcccc
Confidence 4699999999999999999998875431 1111 12447999999 99999999999999754
Q ss_pred ce
Q psy14532 100 RS 101 (258)
Q Consensus 100 ~~ 101 (258)
..
T Consensus 61 ~~ 62 (72)
T cd07702 61 NL 62 (72)
T ss_pred ce
Confidence 43
No 139
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.43 E-value=1.4e-12 Score=77.78 Aligned_cols=75 Identities=24% Similarity=0.391 Sum_probs=53.2
Q ss_pred EEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEEEEEEeCCcce
Q psy14532 22 LKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRS 101 (258)
Q Consensus 22 l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~~~~~~~~~ 101 (258)
|.|.+.|.|.|.++|+|+|.++....... ..+.. .......++|.|.++ ...|+|.|+|.|.|..|..
T Consensus 3 i~~~v~G~P~Pti~W~kng~~l~~~~~~~-~~~~~----------~~~~~~~~~L~i~~~-~~~D~G~YtC~A~N~~G~~ 70 (79)
T cd05855 3 IPFTVKGNPKPTLQWFHEGAILNESEYIC-TKIHV----------INNTEYHGCLQLDNP-THLNNGIYTLVAKNEYGED 70 (79)
T ss_pred EEEEEeEeCCCceEEEECCEECCCCccee-eeeEe----------ecccceEEEEEECCC-CcccCEEEEEEEEcCCccc
Confidence 78999999999999999999986541110 00000 000112457999999 9999999999999999976
Q ss_pred eeceEEEE
Q psy14532 102 SSQNVHIS 109 (258)
Q Consensus 102 ~~~~~~l~ 109 (258)
. .++.+.
T Consensus 71 ~-~~~~~~ 77 (79)
T cd05855 71 E-KNVSAH 77 (79)
T ss_pred c-eEEEee
Confidence 6 555443
No 140
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.43 E-value=9.2e-13 Score=77.47 Aligned_cols=68 Identities=29% Similarity=0.612 Sum_probs=54.0
Q ss_pred EEEEeeeCcccCceEEEEeCCcccCCCcceEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEE
Q psy14532 130 LYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHIS 200 (258)
Q Consensus 130 ~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~ 200 (258)
+.|.|.+.|.|.|.+.|++++..+... +......+.|.|.++.. +|+|.|+|.+.|..|. ....+.|.
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~~-~~~~~~~~~L~I~~v~~-~D~G~Y~C~a~N~~G~-~~~~~~l~ 68 (69)
T cd05725 1 VEFQCEVGGDPVPTVLWRKEDGELPKG-RAEILDDKSLKIRNVTA-GDEGSYTCEAENMVGK-IEASASLT 68 (69)
T ss_pred CEEEEECccCCCCEEEEEECCccCCCC-cEEEeeCCEEEECcCCh-hHCEEEEEEEEcCCCc-EEEEEEEE
Confidence 478999999999999999997766433 34445677899999997 9999999999999884 44444443
No 141
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.43 E-value=1.2e-12 Score=79.09 Aligned_cols=79 Identities=33% Similarity=0.596 Sum_probs=54.7
Q ss_pred eEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEEEEEEeCCc
Q psy14532 20 VSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQG 99 (258)
Q Consensus 20 v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~~~~~~~ 99 (258)
|+|.|.+.|.|.|.+.|++++...... .... .....+.....+++|.|.++ ..+|+|.|.|.+.|..|
T Consensus 1 v~l~C~~~G~P~P~v~W~~~~~~~~~~---~~~~--------~~~~~r~~~~~~~~L~I~~v-~~~D~G~Y~C~a~N~~G 68 (79)
T cd05734 1 VTLNCSAEGYPPPTIVWKHSKGRGHPQ---HTHT--------CCLAGRIQLLSNGSLLIKHV-LEEDSGYYLCKVSNDVG 68 (79)
T ss_pred CEeEeeCeEeCCCEEEEEECCCccccc---cccc--------cccCCCEEEecCCeEEECcC-CcccCEEEEEEEEeCCC
Confidence 589999999999999999964321110 0000 00111222335688999999 99999999999999998
Q ss_pred ceeeceEEEEE
Q psy14532 100 RSSSQNVHISV 110 (258)
Q Consensus 100 ~~~~~~~~l~v 110 (258)
...+..+.|+|
T Consensus 69 ~~~s~~~~l~~ 79 (79)
T cd05734 69 ADASKSMVLTV 79 (79)
T ss_pred CCCceEEEEeC
Confidence 77657766654
No 142
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.43 E-value=2.4e-12 Score=81.07 Aligned_cols=77 Identities=30% Similarity=0.527 Sum_probs=57.5
Q ss_pred cceecCCcEEEEeeeCcccCceEEEEeCCcccCCCc-----ceEEecC---CeEEEEecccCCCCcEEEEEEEeCCCCCc
Q psy14532 122 VSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNR-----RQKVFPN---GTLLIENVQKDHDRGVYWCTATNKQGRSS 193 (258)
Q Consensus 122 ~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~-----~~~~~~~---~~l~i~~~~~~~~~g~y~C~~~~~~~~~~ 193 (258)
..+..|+.+.|.|.+.|.|.|.++|++++..+.... ++.+... +.|.|.++.. +|+|.|+|.|.|..|. .
T Consensus 12 ~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~-~D~G~Y~C~A~N~~G~-~ 89 (97)
T cd05869 12 TAMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQY-TDAGEYLCTASNTIGQ-D 89 (97)
T ss_pred eEEEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCcc-CcCEEEEEEEecCCCC-e
Confidence 344558999999999999999999999876654321 2222222 4799999987 9999999999999984 4
Q ss_pred cceEEEE
Q psy14532 194 SQNVHIS 200 (258)
Q Consensus 194 ~~~~~l~ 200 (258)
+..+.|.
T Consensus 90 ~~~~~l~ 96 (97)
T cd05869 90 SQSMYLE 96 (97)
T ss_pred eEEEEEE
Confidence 4555554
No 143
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=99.43 E-value=5.9e-13 Score=78.91 Aligned_cols=70 Identities=37% Similarity=0.611 Sum_probs=53.9
Q ss_pred EEEEeeeCcccCceEEEEeCCcccCCCcceEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEe
Q psy14532 130 LYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISV 201 (258)
Q Consensus 130 ~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v 201 (258)
+.|.|.+.|.|.|.+.|++++..+...........+.|.|.++.. +|+|.|+|.|.|..|. .+..+.|.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~L~i~~v~~-~D~G~Y~C~a~N~~G~-~~~~~~l~V 70 (71)
T cd05731 1 LLLECIAEGLPTPEISWIKIGGELPADRTKFENFNKTLKIDNVSE-EDDGEYRCTASNSLGS-ARHTISVTV 70 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCeECCCCceeEecCCCEEEECCCCH-HHCEEEEEEEEeCCce-EEEEEEEEE
Confidence 478999999999999999988766543322233456899999997 9999999999999883 445555544
No 144
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.43 E-value=1.8e-12 Score=77.64 Aligned_cols=72 Identities=35% Similarity=0.606 Sum_probs=51.3
Q ss_pred eEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccC----CCceEEEEEEE
Q psy14532 20 VSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKD----HDRGVYWCTAT 95 (258)
Q Consensus 20 v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~----~d~G~Y~C~~~ 95 (258)
+.|.|.+.|.|.|+++|+|++..+..... .... ....+++|.|..+ .. .|+|.|+|.|.
T Consensus 1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~-~~~~---------------~~~~~g~l~i~~~-~~~~~~~d~G~Y~C~A~ 63 (77)
T cd05874 1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKD-PKVT---------------MKPNTGTLVINIM-NGEKAEAYEGVYQCTAR 63 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCcCC-CCEE---------------EeCCCceEEEecc-ccCCCCCCCEEEEEEEE
Confidence 57999999999999999999887643210 1111 1123567888777 53 37899999999
Q ss_pred eCCcceeeceEEE
Q psy14532 96 NKQGRSSSQNVHI 108 (258)
Q Consensus 96 ~~~~~~~~~~~~l 108 (258)
|..|...+..+.|
T Consensus 64 N~~G~~~s~~~~~ 76 (77)
T cd05874 64 NERGAAVSNNIVI 76 (77)
T ss_pred cCCCeEEeeEEEE
Confidence 9998776555544
No 145
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.42 E-value=1.8e-12 Score=77.86 Aligned_cols=72 Identities=28% Similarity=0.493 Sum_probs=55.7
Q ss_pred EEEEeeeCcccCceEEEEeCCcccCCCc-ceEEe-cCCeEEEEecccCCCCcEEEEEEEeCCCCCc-cceEEEEee
Q psy14532 130 LYLGCPVAGYPIESITWQKGVQQLPLNR-RQKVF-PNGTLLIENVQKDHDRGVYWCTATNKQGRSS-SQNVHISVT 202 (258)
Q Consensus 130 ~~l~C~~~~~~~~~i~W~~~~~~~~~~~-~~~~~-~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~-~~~~~l~v~ 202 (258)
++|.|.+.|.|.|.+.|++++..+.... ...+. ..+.|.|.++.. +|+|.|.|.+.|..|... +..+.|.|.
T Consensus 1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~L~I~~~~~-~D~G~Y~C~a~N~~G~~~s~~~~~l~v~ 75 (77)
T cd05760 1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVSSKERTLTLRSAGP-DDSGLYYCCAHNAFGSVCSSQNFTLSII 75 (77)
T ss_pred CEEEEEeeecCCCcEEEEECCEECCCCCccEEEeCCCCEEEEeeCCc-ccCEEEEEEEEeCCCeEeeCceEEEEEe
Confidence 4799999999999999999998875443 22232 345899999997 999999999999988543 456666653
No 146
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.42 E-value=6.4e-13 Score=82.75 Aligned_cols=81 Identities=31% Similarity=0.586 Sum_probs=65.1
Q ss_pred cCCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcceEEe---cCCeEEEEecccCCCCcEEEEEEEeCCCCCcc
Q psy14532 118 PMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVF---PNGTLLIENVQKDHDRGVYWCTATNKQGRSSS 194 (258)
Q Consensus 118 ~~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~ 194 (258)
.+....+..|+.+.|.|.+.+.|.+.+.|++++..+....+..+. ....|.|.++.. +|+|.|+|.+.+..+. ..
T Consensus 6 ~~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~~~n~~g~-~~ 83 (90)
T PF07679_consen 6 KPKDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTSSQRYQIESDGGSSSLTIKNVTR-EDAGTYTCVASNSSGE-AT 83 (90)
T ss_dssp ESSEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEESSSSEEEEEETTEEEEEESSESG-GGSEEEEEEEEETTEE-EE
T ss_pred ecCCEEEeCCCEEEEEEEEEeCCCCcccccccccceeeeeeeeeecccceeEEccCCCCh-hhCEEEEEEEEECCCE-EE
Confidence 356678899999999999999999999999999888776555543 234799999997 9999999999999763 33
Q ss_pred ceEEEE
Q psy14532 195 QNVHIS 200 (258)
Q Consensus 195 ~~~~l~ 200 (258)
..+.|.
T Consensus 84 ~~~~l~ 89 (90)
T PF07679_consen 84 ASVNLT 89 (90)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 444444
No 147
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.41 E-value=2.3e-12 Score=77.82 Aligned_cols=77 Identities=22% Similarity=0.365 Sum_probs=53.5
Q ss_pred EEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEEEEEEeCCcce
Q psy14532 22 LKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRS 101 (258)
Q Consensus 22 l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~~~~~~~~~ 101 (258)
|.|.+.|.|.|.++|+|+|+.+...... ...... .........++|.|.++ +..|+|.|+|.|.|..|..
T Consensus 3 i~~~v~G~P~P~v~W~k~g~~i~~~~~~-~~~~~~--------~~~~~~~~~~~L~I~~~-~~~D~G~YtC~A~N~~G~~ 72 (81)
T cd04971 3 IPFTVRGNPKPTLTWYHNGAVLNESDYI-RTEIHY--------EVTTPTEYHGCLQFDNP-THVNNGNYTLVASNEYGQD 72 (81)
T ss_pred EEEEeEeeCCCcEEEEECCEECcCCCce-eEEEEe--------ecccccccEEEEEECCC-CcccCeEEEEEEEeCCCCe
Confidence 6899999999999999999988654210 000000 00001112457999999 9999999999999999887
Q ss_pred eeceEEEE
Q psy14532 102 SSQNVHIS 109 (258)
Q Consensus 102 ~~~~~~l~ 109 (258)
. ..+.|.
T Consensus 73 ~-~~~~~~ 79 (81)
T cd04971 73 S-KSISAH 79 (81)
T ss_pred e-eEEEee
Confidence 6 555543
No 148
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.41 E-value=3.2e-12 Score=80.64 Aligned_cols=79 Identities=28% Similarity=0.363 Sum_probs=60.5
Q ss_pred CCeeccCCCcceecCCcEEEEeeeCcccCc-eEEEEeCCcccCCC--cceEEecC-------CeEEEEecccCCCCcEEE
Q psy14532 113 APFVRPMGNVSAIAGEPLYLGCPVAGYPIE-SITWQKGVQQLPLN--RRQKVFPN-------GTLLIENVQKDHDRGVYW 182 (258)
Q Consensus 113 ~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-~i~W~~~~~~~~~~--~~~~~~~~-------~~l~i~~~~~~~~~g~y~ 182 (258)
+|.+.......+..|+.+.|.|.+.|.|.| .+.|++++..+... .++.+... +.|.|.++..++|.|.|+
T Consensus 2 pp~i~~~~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~ 81 (98)
T cd05758 2 PPIITSEATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSYN 81 (98)
T ss_pred CCeEcCCCcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeEE
Confidence 344444556678899999999999999988 69999998877543 34444332 369999998635589999
Q ss_pred EEEEeCCCC
Q psy14532 183 CTATNKQGR 191 (258)
Q Consensus 183 C~~~~~~~~ 191 (258)
|.|.|..|.
T Consensus 82 C~A~N~~G~ 90 (98)
T cd05758 82 CTAWNSFGS 90 (98)
T ss_pred EEEEcCCCc
Confidence 999999985
No 149
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=99.41 E-value=1.6e-12 Score=78.30 Aligned_cols=75 Identities=23% Similarity=0.393 Sum_probs=57.7
Q ss_pred CCCcceecCCcEEEEeeeCcccCc-eEEEEeCCcccCCCcceEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceE
Q psy14532 119 MGNVSAIAGEPLYLGCPVAGYPIE-SITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNV 197 (258)
Q Consensus 119 ~~~~~~~~g~~~~l~C~~~~~~~~-~i~W~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~ 197 (258)
+....+..|+.+.|.|.+.|.|.| .|.|++++..+... . ....+.|.|..+ .|.|.|.|.|.|..|...++..
T Consensus 5 P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~--~-~~~~s~L~i~~~---~d~g~Y~C~A~N~~G~~~s~~a 78 (81)
T cd05749 5 PEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGDP--P-APSPSVLNVPGL---NETSKFSCEAHNAKGVTTSRTG 78 (81)
T ss_pred CCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCCC--C-CCCCCEEEEccc---cCCeEEEEEEEeccCcEEeeeE
Confidence 456778899999999999999999 79999999877541 1 123456888765 4679999999999986555544
Q ss_pred EE
Q psy14532 198 HI 199 (258)
Q Consensus 198 ~l 199 (258)
+|
T Consensus 79 ~~ 80 (81)
T cd05749 79 TV 80 (81)
T ss_pred Ee
Confidence 43
No 150
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=99.41 E-value=4.8e-12 Score=75.96 Aligned_cols=73 Identities=30% Similarity=0.551 Sum_probs=56.0
Q ss_pred eEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeC-CcEEEeecccCCCceEEEEEEEeCC
Q psy14532 20 VSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPN-GTLLIENVQKDHDRGVYWCTATNKQ 98 (258)
Q Consensus 20 v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~i~~~~~~~d~G~Y~C~~~~~~ 98 (258)
+.|.|.+.+.|.+.+.|+|++..+..... .++ ....+ ..|.|.++ ..+|.|.|+|.+.|..
T Consensus 1 ~~L~C~v~g~P~p~v~W~k~~~~l~~~~~-~~~----------------~~~~~~~~l~I~~~-~~~D~G~Y~C~a~N~~ 62 (76)
T cd05736 1 ASLRCHAEGIPLPRLTWLKNGMDITPKLS-KQL----------------TLIANGSELHISNV-RYEDTGAYTCIAKNEA 62 (76)
T ss_pred CEeEeEeeecCCCEEEEEECCEECCCCCC-ccE----------------EEeCCCCEEEECcC-CcccCEEEEEEEEcCC
Confidence 46999999999999999999887754311 111 11122 35899999 9999999999999999
Q ss_pred cceeeceEEEEEe
Q psy14532 99 GRSSSQNVHISVT 111 (258)
Q Consensus 99 ~~~~~~~~~l~v~ 111 (258)
|... ..+.|.|.
T Consensus 63 G~~~-~~~~l~V~ 74 (76)
T cd05736 63 GVDE-DISSLFVE 74 (76)
T ss_pred CCcc-eEEEEEEE
Confidence 8877 77777775
No 151
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=99.41 E-value=4.1e-12 Score=77.19 Aligned_cols=70 Identities=30% Similarity=0.491 Sum_probs=55.6
Q ss_pred eceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCc
Q psy14532 8 KFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDR 87 (258)
Q Consensus 8 ~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~ 87 (258)
.|.+..+.+|+++.|.|.+.+ +.+.+.|+++|.++.... .++ ...++.|.|.++ +.+|+
T Consensus 2 ~P~~~~v~~G~~v~L~C~~~~-~~~~i~W~~ng~~i~~~~--~r~-----------------~~~~~~L~I~nv-~~~Ds 60 (87)
T cd05873 2 DPRQRTFKLGNNAELKCSPKS-NLARVVWKFDGKVLTPES--AKY-----------------LLYRDGLLIFNA-SEADA 60 (87)
T ss_pred CcceEEEECCCCEEEEEECCC-CCCeEEEEECCEECCCCC--ceE-----------------EEECCcEEEeCC-CHHHC
Confidence 467788999999999999764 567999999999876431 111 123567999999 99999
Q ss_pred eEEEEEEEeCC
Q psy14532 88 GVYWCTATNKQ 98 (258)
Q Consensus 88 G~Y~C~~~~~~ 98 (258)
|.|+|.+....
T Consensus 61 G~Y~C~a~e~~ 71 (87)
T cd05873 61 GRYQCLSVEKS 71 (87)
T ss_pred EEEEEEEEecc
Confidence 99999998764
No 152
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.40 E-value=1.6e-12 Score=78.38 Aligned_cols=65 Identities=32% Similarity=0.615 Sum_probs=53.5
Q ss_pred CCcEEEEeeeCcccCceEEEEeCCcccCCCcceEEec---CCeEEEEecccCCCCcEEEEEEEeCCCCC
Q psy14532 127 GEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFP---NGTLLIENVQKDHDRGVYWCTATNKQGRS 192 (258)
Q Consensus 127 g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~~~~g~y~C~~~~~~~~~ 192 (258)
|+++.|.|.+.|.|.|.+.|++++..+....++.+.. .+.|.|.++.. +|.|.|+|.+.|..|..
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~a~N~~G~~ 68 (78)
T cd05743 1 GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKE-SDQGAYTCEAINTRGMV 68 (78)
T ss_pred CCEEEEEEEEEEecCCEEEEEECCeECCCCCCEEEEECCCEEEEEECCCCh-HHCEEEEEEEEecCCEE
Confidence 6789999999999999999999987776555444332 24799999997 99999999999998743
No 153
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.40 E-value=1.5e-12 Score=77.68 Aligned_cols=67 Identities=22% Similarity=0.320 Sum_probs=51.9
Q ss_pred EEeeeCcccCceEEEEeCCcccCCCcceEE--------ecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEE
Q psy14532 132 LGCPVAGYPIESITWQKGVQQLPLNRRQKV--------FPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHIS 200 (258)
Q Consensus 132 l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~--------~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~ 200 (258)
|.|.+.|.|.|.++|++++..+........ ...+.|.|.++.. +|+|.|+|.|.|..|+ .+..+.+.
T Consensus 3 i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~-~D~G~YtC~A~N~~G~-~~~~~~~~ 77 (79)
T cd05855 3 IPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTH-LNNGIYTLVAKNEYGE-DEKNVSAH 77 (79)
T ss_pred EEEEEeEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCc-ccCEEEEEEEEcCCcc-cceEEEee
Confidence 678999999999999999998875543211 1234799999997 9999999999999984 44444443
No 154
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=99.40 E-value=2.2e-12 Score=79.24 Aligned_cols=78 Identities=29% Similarity=0.439 Sum_probs=60.2
Q ss_pred eeeceeeeecCCCceEEEEEEee-cCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccC
Q psy14532 6 IYKFIQQTLQPGPPVSLKCIATG-NPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKD 84 (258)
Q Consensus 6 ~~~~~~~~~~~g~~v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~ 84 (258)
+..|....+.+|++++|.|.+.+ .+.+.+.|++++..+... ....++.|.|.++ +.
T Consensus 5 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~----------------------~~~~~~~L~I~~v-~~ 61 (85)
T cd05754 5 VEEPRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSR----------------------AMDFNGILTIRNV-QL 61 (85)
T ss_pred ecCCCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCc----------------------ccccCCEEEECCC-CH
Confidence 45667788999999999999865 677899999987543221 0112568999999 99
Q ss_pred CCceEEEEEEEeCCcceeeceEE
Q psy14532 85 HDRGVYWCTATNKQGRSSSQNVH 107 (258)
Q Consensus 85 ~d~G~Y~C~~~~~~~~~~~~~~~ 107 (258)
+|+|.|.|.+.|..|... ..+.
T Consensus 62 ~DsG~Y~C~a~n~~g~~~-~~~~ 83 (85)
T cd05754 62 SDAGTYVCTGSNMLDTDE-ATAT 83 (85)
T ss_pred HHCEEEEEEEeccCCeEe-EEEE
Confidence 999999999999887665 4443
No 155
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=99.40 E-value=3e-12 Score=79.44 Aligned_cols=85 Identities=24% Similarity=0.320 Sum_probs=55.7
Q ss_pred CCceEEEEEEeecCCCeEEEeeCC----EeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEEE
Q psy14532 17 GPPVSLKCIATGNPTPHISWKLDG----YPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWC 92 (258)
Q Consensus 17 g~~v~l~C~~~~~~~~~v~W~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C 92 (258)
|+++.|.|.+.+.|.|.+.|+|++ ..+..... ....... .... ........+|.|.++ +.+|+|.|+|
T Consensus 1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~-~~~~~~~----~~~~--~~~~~~~~~L~I~~v-~~~D~G~Y~C 72 (90)
T cd05858 1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGL-PYVTVLK----TAGV--NTTDKEMEVLYLRNV-TFEDAGEYTC 72 (90)
T ss_pred CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCC-eeEEEec----cCCc--eecCCceeEEEEccC-CHHHCEEEEE
Confidence 789999999999999999999853 32221100 0000000 0000 000001247999999 9999999999
Q ss_pred EEEeCCcceeeceEEEEE
Q psy14532 93 TATNKQGRSSSQNVHISV 110 (258)
Q Consensus 93 ~~~~~~~~~~~~~~~l~v 110 (258)
.+.|..|... .++.|.|
T Consensus 73 ~A~N~~G~~~-~~a~L~V 89 (90)
T cd05858 73 LAGNSIGISH-HSAWLTV 89 (90)
T ss_pred EEEeCCCccc-ceEEEEE
Confidence 9999999876 7777776
No 156
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=99.39 E-value=2.1e-12 Score=78.92 Aligned_cols=76 Identities=25% Similarity=0.444 Sum_probs=58.2
Q ss_pred ceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcceEE-ecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEE
Q psy14532 123 SAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKV-FPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHIS 200 (258)
Q Consensus 123 ~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~ 200 (258)
....|+.+.|.|.+.+.|.+.+.|++++..+........ .....|.|.++.. +|+|.|+|.+.|..|. ....+.|.
T Consensus 5 ~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~L~i~~v~~-~D~G~Y~C~a~N~~G~-~~~~~~v~ 81 (82)
T cd05856 5 ARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGESRKKKWTLSLKNLKP-EDSGKYTCHVSNRAGE-INATYKVD 81 (82)
T ss_pred eccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCccceecCceEEEEEccCCh-hhCEEEEEEEEcCCcc-EEEEEEEe
Confidence 456789999999999999999999999887754432222 2235799999997 9999999999999884 44444443
No 157
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=99.38 E-value=5.4e-12 Score=76.67 Aligned_cols=80 Identities=35% Similarity=0.698 Sum_probs=60.7
Q ss_pred CCcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeec
Q psy14532 2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENV 81 (258)
Q Consensus 2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~ 81 (258)
+|.|...+ ..+.+|++++|.|.+.+.+...+.|++++..+... ...+.|.++
T Consensus 1 kP~l~~~~--~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~--------------------------~~~~~~~~~ 52 (80)
T PF13895_consen 1 KPVLSSSP--QSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINSS--------------------------QNGLFIPNV 52 (80)
T ss_dssp --EEEEES--SEEETTSEEEEEEEEESSSSSEEEEEETTEEEEEE--------------------------SSEEEESSE
T ss_pred CcEEEccc--eEEeCCCcEEEEEEEEcccceeeeeeeeeeeeeee--------------------------eeeeeeeee
Confidence 46666555 66889999999999998888899999988665522 112677888
Q ss_pred ccCCCceEEEEEEEeCCcceeeceEEEEE
Q psy14532 82 QKDHDRGVYWCTATNKQGRSSSQNVHISV 110 (258)
Q Consensus 82 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 110 (258)
..+|.|.|+|.+.+..+...+..+.|.|
T Consensus 53 -~~~~~g~y~C~~~~~~~~~~s~~~~v~V 80 (80)
T PF13895_consen 53 -SPEDSGNYTCRASNGSGSNTSTSVNVTV 80 (80)
T ss_dssp -EGGGTEEEEEEEEETTEEEEEEEEEEEE
T ss_pred -ccccCEEEEEEEEeCCCCeEeeeEEeeC
Confidence 8999999999999976655556666664
No 158
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.37 E-value=2.7e-12 Score=77.51 Aligned_cols=68 Identities=22% Similarity=0.331 Sum_probs=51.8
Q ss_pred EEEeeeCcccCceEEEEeCCcccCCCcceEE----------ecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEE
Q psy14532 131 YLGCPVAGYPIESITWQKGVQQLPLNRRQKV----------FPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHIS 200 (258)
Q Consensus 131 ~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~----------~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~ 200 (258)
.|.|.+.|.|.|.++|++++..+........ ...+.|.|.++.. +|+|.|+|.|.|..|. .+..+.|.
T Consensus 2 ~i~~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~-~D~G~YtC~A~N~~G~-~~~~~~~~ 79 (81)
T cd04971 2 CIPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTH-VNNGNYTLVASNEYGQ-DSKSISAH 79 (81)
T ss_pred eEEEEeEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCc-ccCeEEEEEEEeCCCC-eeeEEEee
Confidence 3689999999999999999988875543221 1134699999997 9999999999999984 44444443
No 159
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.37 E-value=4.4e-12 Score=78.92 Aligned_cols=78 Identities=22% Similarity=0.424 Sum_probs=57.9
Q ss_pred CcceecCCcEEEEeeeCc-----ccCceEEEEeCCcccCCC--cceEE-ecCCeEEEEecccCCCCcEEEEEEEeCCCCC
Q psy14532 121 NVSAIAGEPLYLGCPVAG-----YPIESITWQKGVQQLPLN--RRQKV-FPNGTLLIENVQKDHDRGVYWCTATNKQGRS 192 (258)
Q Consensus 121 ~~~~~~g~~~~l~C~~~~-----~~~~~i~W~~~~~~~~~~--~~~~~-~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~ 192 (258)
...+.+|+.+.|.|.+.+ .|.+.+.|++++..+... ...++ ..++.|.|.++.. +|+|.|+|.+.|..+.
T Consensus 8 ~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~~~~~L~I~~~~~-~DsG~Y~C~~~N~~g~- 85 (94)
T cd05756 8 KSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQQKDLLWFLPAAL-EDSGLYTCVVRNSTYC- 85 (94)
T ss_pred EEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeeecCCeEEEccCCc-ccCeEEEEEEcCCCcc-
Confidence 455778999999999988 678899999998764321 11222 2357899999997 9999999999998774
Q ss_pred ccceEEEE
Q psy14532 193 SSQNVHIS 200 (258)
Q Consensus 193 ~~~~~~l~ 200 (258)
.+..+.|.
T Consensus 86 ~~~~~~L~ 93 (94)
T cd05756 86 MKVSISLT 93 (94)
T ss_pred EEEEEEEE
Confidence 33444444
No 160
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.36 E-value=4.3e-12 Score=76.03 Aligned_cols=70 Identities=29% Similarity=0.575 Sum_probs=51.8
Q ss_pred EEEEeeeCcccCceEEEEeCCcccCCC--cceEE-ecCCeEEEEeccc---CCCCcEEEEEEEeCCCCCccceEEE
Q psy14532 130 LYLGCPVAGYPIESITWQKGVQQLPLN--RRQKV-FPNGTLLIENVQK---DHDRGVYWCTATNKQGRSSSQNVHI 199 (258)
Q Consensus 130 ~~l~C~~~~~~~~~i~W~~~~~~~~~~--~~~~~-~~~~~l~i~~~~~---~~~~g~y~C~~~~~~~~~~~~~~~l 199 (258)
+.|.|.+.|.|.|.++|++++..+... ....+ ..+++|.|..+.. +.|.|.|+|.|.|..|...++.+.|
T Consensus 1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~~ 76 (77)
T cd05874 1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVSNNIVI 76 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCcCCCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEeeEEEE
Confidence 479999999999999999998876322 22333 3467888877754 1378999999999998766655544
No 161
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.36 E-value=7.6e-12 Score=74.86 Aligned_cols=70 Identities=37% Similarity=0.603 Sum_probs=52.3
Q ss_pred EEEEeeeCcccCceEEEEeCCccc-CC--CcceEE-ecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEe
Q psy14532 130 LYLGCPVAGYPIESITWQKGVQQL-PL--NRRQKV-FPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISV 201 (258)
Q Consensus 130 ~~l~C~~~~~~~~~i~W~~~~~~~-~~--~~~~~~-~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v 201 (258)
+.|.|.+.|.|.|.++|++++... .. ..+... ...+.|.|.++.. +|+|.|+|.|.|..|. .+..+.|.|
T Consensus 1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~-~D~G~Y~C~A~N~~G~-~~~~~~l~V 74 (75)
T cd05763 1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKI-EDTGVYSCTAQNTAGS-ISANATLTV 74 (75)
T ss_pred CEeEeecccccCCEEEEEeCCCccCCcccccceEEecCCCEEEEeeCCc-ccCEEEEEEEEcCCCE-EEeeEEEEE
Confidence 468999999999999999987632 21 222333 2346799999997 9999999999999884 445566654
No 162
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=99.36 E-value=4e-12 Score=79.07 Aligned_cols=80 Identities=20% Similarity=0.282 Sum_probs=52.9
Q ss_pred eeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceE
Q psy14532 10 IQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGV 89 (258)
Q Consensus 10 ~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~ 89 (258)
.++.+.+|+++.|.|.+.+.|.+.+.|++++..+.... ........+. ..........+|.|.++ +.+|+|.
T Consensus 5 ~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~--~~~~~~~~r~-----~~~~~~~~~~~L~I~nV-~~~D~G~ 76 (95)
T cd05882 5 QDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFG--EKRALRDNRI-----QLVKSTPTELIISISNV-QLSDEGE 76 (95)
T ss_pred ccEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeC--CeEEEeCCeE-----EEEeCCCceEEEEECCC-CcccCEE
Confidence 56789999999999999999999999999765321100 0000000000 00000012358999999 9999999
Q ss_pred EEEEEEeC
Q psy14532 90 YWCTATNK 97 (258)
Q Consensus 90 Y~C~~~~~ 97 (258)
|+|.+...
T Consensus 77 YtC~~~t~ 84 (95)
T cd05882 77 YTCSIFTM 84 (95)
T ss_pred EEEEEEee
Confidence 99999873
No 163
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=99.35 E-value=5.1e-12 Score=75.71 Aligned_cols=69 Identities=30% Similarity=0.456 Sum_probs=50.8
Q ss_pred eEEEEEEee-cCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEEEEEEeCC
Q psy14532 20 VSLKCIATG-NPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQ 98 (258)
Q Consensus 20 v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~~~~~~ 98 (258)
+.|.|.+.+ .|.+.+.|+|++..+..........+. .....++|.|.++ +.+|+|.|+|.+.|..
T Consensus 1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~-------------~~~~~~~L~I~~~-~~~D~G~Y~C~a~N~~ 66 (75)
T cd05750 1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIR-------------NKKKNSELQINKA-KLADSGEYTCVVENIL 66 (75)
T ss_pred CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEEE-------------ecCceEEEEEccC-CcccCeEEEEEEEEcC
Confidence 479999999 899999999999877654211110010 0012357999999 9999999999999998
Q ss_pred ccee
Q psy14532 99 GRSS 102 (258)
Q Consensus 99 ~~~~ 102 (258)
|...
T Consensus 67 G~~~ 70 (75)
T cd05750 67 GNDT 70 (75)
T ss_pred Ccee
Confidence 8765
No 164
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=99.35 E-value=6.4e-12 Score=75.27 Aligned_cols=70 Identities=23% Similarity=0.485 Sum_probs=52.3
Q ss_pred EEEEeeeCcccCceEEEEeCCcccC--CCcceEE-ecCCeEEEEecc---cCCCCcEEEEEEEeCCCCCccceEEE
Q psy14532 130 LYLGCPVAGYPIESITWQKGVQQLP--LNRRQKV-FPNGTLLIENVQ---KDHDRGVYWCTATNKQGRSSSQNVHI 199 (258)
Q Consensus 130 ~~l~C~~~~~~~~~i~W~~~~~~~~--~~~~~~~-~~~~~l~i~~~~---~~~~~g~y~C~~~~~~~~~~~~~~~l 199 (258)
+.|.|.+.|.|.|.++|++++..+. ...+..+ ..+++|.|..+. .++|.|.|+|.|.|..|...+..+.|
T Consensus 1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~~ 76 (77)
T cd05875 1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALSNKILL 76 (77)
T ss_pred CEEEEeccccCCCEEEEEECCEEccCcCCCcEEEeCCCceEEEeccCCCCCCCCCEEEEEEEEeccceEEEEEEEE
Confidence 4689999999999999999998653 2333333 356788888753 22579999999999998766665544
No 165
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=99.35 E-value=7.7e-12 Score=76.58 Aligned_cols=81 Identities=17% Similarity=0.305 Sum_probs=55.7
Q ss_pred CCceEEEEEEeec--CCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEEEEE
Q psy14532 17 GPPVSLKCIATGN--PTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTA 94 (258)
Q Consensus 17 g~~v~l~C~~~~~--~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~~ 94 (258)
|++++|.|.+.+. |.+.+.|++++..+......... ..........++|.|.++ +..|+|.|+|.+
T Consensus 1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~-----------~~~~~~~~~~s~L~I~~v-~~~DsG~Y~C~a 68 (84)
T cd05742 1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTR-----------QSLSEATELSSTLTIPNA-TLKDSGTYTCAA 68 (84)
T ss_pred CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecc-----------cccccceEEEEEEEECCC-ChhhCEEEEEEE
Confidence 7899999999998 78899999877654322110000 000001112457999999 999999999999
Q ss_pred EeCCcceeeceEEEEE
Q psy14532 95 TNKQGRSSSQNVHISV 110 (258)
Q Consensus 95 ~~~~~~~~~~~~~l~v 110 (258)
.+..+... .+..|.|
T Consensus 69 ~n~~~~~~-~s~~v~v 83 (84)
T cd05742 69 SSGTMDQK-ESTKVNI 83 (84)
T ss_pred ccCCCceE-EEEEEEE
Confidence 99987765 5666654
No 166
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=99.35 E-value=8.3e-12 Score=73.03 Aligned_cols=61 Identities=26% Similarity=0.509 Sum_probs=48.7
Q ss_pred CCcEEEEeeeCcccCceEEEEeCCcccCCCcceEEecCCeEEEEecccCCCCcEEEEEEEeCCCC
Q psy14532 127 GEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGR 191 (258)
Q Consensus 127 g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~ 191 (258)
|+.+.|.|.+.|.|.|.|.|++++..+........ ....|.|.++ .|.|.|+|.|.|..|.
T Consensus 1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~~~~~~-~~~~L~i~~~---~d~G~Y~C~A~N~~G~ 61 (69)
T cd05739 1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKEDEMPV-GRNVLELTNI---YESANYTCVAISSLGM 61 (69)
T ss_pred CCeEEEEEEeeecCCCEEEEEECCEECCCccceec-CccEEEEecc---ccCeeEEEEEEeCCCE
Confidence 67899999999999999999999987755443322 3446888775 4689999999999884
No 167
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=99.34 E-value=1.9e-11 Score=74.61 Aligned_cols=81 Identities=23% Similarity=0.438 Sum_probs=54.8
Q ss_pred CCceEEEEEEeecCCCeEEEeeCCEeCcCCcccc-ceecccceeeccccccceeeeeCCcEEEeecccCCCceEEEEEEE
Q psy14532 17 GPPVSLKCIATGNPTPHISWKLDGYPLAGDRHEN-KNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTAT 95 (258)
Q Consensus 17 g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~~~ 95 (258)
|++++|.|.+.+.|.+.+.|++.++......... ...+. ......+|.|.++ +.+|+|.|.|.+.
T Consensus 1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~-------------~~~~~s~L~I~~~-~~~DsG~Y~C~a~ 66 (84)
T cd05861 1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPEVEEVKVP-------------ATTLRSTLTFPHA-TVEDSGTYECAAH 66 (84)
T ss_pred CCcEEEEEEEECCCccEEEEEECCccCCCCceEEEEEecC-------------CcEEEEEEEECCC-CcCCCEEEEEEEE
Confidence 7899999999998889999998765322110000 00000 0112457999999 9999999999999
Q ss_pred eCCc-ceeeceEEEEEe
Q psy14532 96 NKQG-RSSSQNVHISVT 111 (258)
Q Consensus 96 ~~~~-~~~~~~~~l~v~ 111 (258)
+..+ .....++.|+|.
T Consensus 67 n~~~~~~~~~sv~i~V~ 83 (84)
T cd05861 67 ESTQDQKAFKKVNITVH 83 (84)
T ss_pred ECccCcceeEEEEEEEe
Confidence 8765 223377777775
No 168
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.34 E-value=1.4e-11 Score=76.35 Aligned_cols=73 Identities=27% Similarity=0.393 Sum_probs=52.7
Q ss_pred CCcEEEEeeeCcccCceEEEEeCC----cccCCCc--ceEE----------ecCCeEEEEecccCCCCcEEEEEEEeCCC
Q psy14532 127 GEPLYLGCPVAGYPIESITWQKGV----QQLPLNR--RQKV----------FPNGTLLIENVQKDHDRGVYWCTATNKQG 190 (258)
Q Consensus 127 g~~~~l~C~~~~~~~~~i~W~~~~----~~~~~~~--~~~~----------~~~~~l~i~~~~~~~~~g~y~C~~~~~~~ 190 (258)
|+.+.|.|.+.|.|.|.|+|++++ ..+.... .... .....|.|.++.. +|+|.|+|.|.|..|
T Consensus 1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~A~N~~G 79 (90)
T cd04974 1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSF-DDAGEYTCLAGNSIG 79 (90)
T ss_pred CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEecccc-ccCcEEEEEeecccC
Confidence 678999999999999999999963 2221111 1011 1234689999997 999999999999998
Q ss_pred CCccceEEEEe
Q psy14532 191 RSSSQNVHISV 201 (258)
Q Consensus 191 ~~~~~~~~l~v 201 (258)
. ...++.|.|
T Consensus 80 ~-~~~sa~L~V 89 (90)
T cd04974 80 P-SHHSAWLTV 89 (90)
T ss_pred c-ccCCEEEEe
Confidence 5 445666655
No 169
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=99.34 E-value=1.8e-11 Score=75.26 Aligned_cols=81 Identities=32% Similarity=0.579 Sum_probs=59.1
Q ss_pred eeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEE
Q psy14532 12 QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYW 91 (258)
Q Consensus 12 ~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~ 91 (258)
+.+.+|+.+.|.|.+.+.|.+.+.|++++..+.......... .......|.|.++ ..+|+|.|.
T Consensus 4 ~~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~---------------~~~~~~~l~i~~~-~~~d~g~Y~ 67 (85)
T cd05729 4 HAVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYK---------------VRKKKWTLILESV-VPSDSGKYT 67 (85)
T ss_pred eEecCCCcEEEEEEcCCCCCCeEEEEECCEECcccCceeEEE---------------ccCcEEEEEEeEC-CcccCEEEE
Confidence 456789999999999998889999999987765331100000 0012346889999 999999999
Q ss_pred EEEEeCCcceeeceEEEE
Q psy14532 92 CTATNKQGRSSSQNVHIS 109 (258)
Q Consensus 92 C~~~~~~~~~~~~~~~l~ 109 (258)
|.+.+..|... .++.|.
T Consensus 68 C~~~n~~g~~~-~~~~l~ 84 (85)
T cd05729 68 CIVENKYGSIN-HTYKVD 84 (85)
T ss_pred EEEEECCceEE-EEEEEe
Confidence 99999887755 566554
No 170
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=99.33 E-value=7.2e-12 Score=75.21 Aligned_cols=70 Identities=26% Similarity=0.566 Sum_probs=52.8
Q ss_pred EEEEeeeCcccCceEEEEeCCcccCCC--cceEE-ecCCeEEEEeccc---CCCCcEEEEEEEeCCCCCccceEEE
Q psy14532 130 LYLGCPVAGYPIESITWQKGVQQLPLN--RRQKV-FPNGTLLIENVQK---DHDRGVYWCTATNKQGRSSSQNVHI 199 (258)
Q Consensus 130 ~~l~C~~~~~~~~~i~W~~~~~~~~~~--~~~~~-~~~~~l~i~~~~~---~~~~g~y~C~~~~~~~~~~~~~~~l 199 (258)
+.|.|.+.|.|.|.++|++++..+... ..... ..++.|.|.++.. .+|+|.|+|.|.|..|...+..+.|
T Consensus 1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~l 76 (77)
T cd05733 1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAISNEIHL 76 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCCCCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEccccEE
Confidence 478999999999999999999876432 23333 3467898888742 2689999999999998766655543
No 171
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=99.33 E-value=1.5e-11 Score=76.02 Aligned_cols=71 Identities=30% Similarity=0.473 Sum_probs=54.8
Q ss_pred eeeecCCCceEEEEEEeec-----CCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCC
Q psy14532 11 QQTLQPGPPVSLKCIATGN-----PTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDH 85 (258)
Q Consensus 11 ~~~~~~g~~v~l~C~~~~~-----~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~ 85 (258)
.+.+.+|+++.|.|...+. +.+.+.|+|++.++.... . ....++.|.|.++ ..+
T Consensus 4 ~~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~---~-----------------~~~~~~~L~I~~v-~~~ 62 (92)
T cd05757 4 KQILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDR---K-----------------RFVKGSKLLIQNV-TEE 62 (92)
T ss_pred eEEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCc---c-----------------EEecCCEEEEeeC-Chh
Confidence 3568899999999986532 467999999998876431 1 0114678999999 999
Q ss_pred CceEEEEEEEeCCccee
Q psy14532 86 DRGVYWCTATNKQGRSS 102 (258)
Q Consensus 86 d~G~Y~C~~~~~~~~~~ 102 (258)
|+|.|+|.+.+..+...
T Consensus 63 DsG~YtC~~~n~~~~~~ 79 (92)
T cd05757 63 DAGNYTCKLTFTHNGKQ 79 (92)
T ss_pred hCEEEEEEEEecCCCEE
Confidence 99999999998876543
No 172
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=99.31 E-value=1.4e-11 Score=74.89 Aligned_cols=68 Identities=21% Similarity=0.328 Sum_probs=55.5
Q ss_pred CCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcceEEecCCeEEEEecccCCCCcEEEEEEEeCC
Q psy14532 120 GNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQ 189 (258)
Q Consensus 120 ~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~ 189 (258)
....+..|+++.|.|.+.+ +.+.+.|++++..+..........++.|.|.+++. +|+|.|+|.+.+..
T Consensus 4 ~~~~v~~G~~v~L~C~~~~-~~~~i~W~~ng~~i~~~~~r~~~~~~~L~I~nv~~-~DsG~Y~C~a~e~~ 71 (87)
T cd05873 4 RQRTFKLGNNAELKCSPKS-NLARVVWKFDGKVLTPESAKYLLYRDGLLIFNASE-ADAGRYQCLSVEKS 71 (87)
T ss_pred ceEEEECCCCEEEEEECCC-CCCeEEEEECCEECCCCCceEEEECCcEEEeCCCH-HHCEEEEEEEEecc
Confidence 4567889999999999864 67899999999988765333344667899999997 99999999999863
No 173
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=99.31 E-value=1.3e-11 Score=76.37 Aligned_cols=86 Identities=19% Similarity=0.268 Sum_probs=54.1
Q ss_pred eeecCCCceEEEEEEeecCCCeEEEeeCCEeC-cCCccccceecccceeeccccccceee--eeCCcEEEeecccCCCce
Q psy14532 12 QTLQPGPPVSLKCIATGNPTPHISWKLDGYPL-AGDRHENKNRIGEARVQQLPLNRRQKV--FPNGTLLIENVQKDHDRG 88 (258)
Q Consensus 12 ~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~~d~G 88 (258)
+.+.+|++|+|.|...+.+.+.+.|+++++.. .... ....+........++..+... ..+.+|.|.++ +.+|+|
T Consensus 2 v~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~--~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l-~~sDsg 78 (94)
T cd07690 2 VLGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQ--GSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNL-KIEDSD 78 (94)
T ss_pred eEeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcC--CEEEEecccccCCCCceecccCCCCeEEEEECCC-CHHHCE
Confidence 45789999999999988888899999876332 2221 111111111111111111111 12346999999 999999
Q ss_pred EEEEEEEeCCcc
Q psy14532 89 VYWCTATNKQGR 100 (258)
Q Consensus 89 ~Y~C~~~~~~~~ 100 (258)
.|.|.+.+..+.
T Consensus 79 tY~C~v~~~~~~ 90 (94)
T cd07690 79 TYICEVEDKKEE 90 (94)
T ss_pred EEEEEECCccce
Confidence 999999887653
No 174
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=99.31 E-value=1.1e-11 Score=83.47 Aligned_cols=78 Identities=18% Similarity=0.363 Sum_probs=63.5
Q ss_pred eEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEeecCCccccCCCCCccCCCCeeeEEEEeccCCCC-ceeEEEECCE
Q psy14532 166 TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPP-LTISWLKNGL 244 (258)
Q Consensus 166 ~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~-~~~~W~~~g~ 244 (258)
+|.|.+++. +|+|.|.|.+.+..+. ....+.|.|..+|.+...+.......|+.+.|.|.+.+.+|. +.|.|+++|.
T Consensus 2 sL~i~~v~~-~D~G~Y~C~~~~~~~~-~~~~~~l~v~~~P~v~~~~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g~ 79 (139)
T cd05771 2 SLTLPGLTV-HDEGTYICSVSTPPHQ-AQQIIQLSVSEPPRVRLSLEKLVSMIEEPQTLICHIAGYYPLDVQVEWTREPP 79 (139)
T ss_pred eEEECCCCH-HHCEEEEEEEEccCcc-eeeEEEEEEecCCceEEeCCCceeecCCcEEEEEEECCCCCCCeEEEEEECCC
Confidence 588899998 9999999999987663 567888999999988776654444478999999999655675 6999999986
Q ss_pred e
Q psy14532 245 P 245 (258)
Q Consensus 245 ~ 245 (258)
.
T Consensus 80 ~ 80 (139)
T cd05771 80 G 80 (139)
T ss_pred C
Confidence 4
No 175
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=99.31 E-value=3.6e-11 Score=74.76 Aligned_cols=94 Identities=22% Similarity=0.334 Sum_probs=64.4
Q ss_pred CCcceeeceeeeecCCCceEEEEEEeecCCC-eEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEee
Q psy14532 2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTP-HISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIEN 80 (258)
Q Consensus 2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~ 80 (258)
||.| .....+.+.+|+++.|.|.+.+.|.| .+.|.+.+..+.... ..++.+..... ......+|.|.+
T Consensus 2 pP~i-~~~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~-~~r~~I~~~~~---------~~g~~S~L~I~~ 70 (98)
T cd05898 2 PPII-SSEQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGT-SERYTVERTST---------GSGVLSTLTINN 70 (98)
T ss_pred CCEE-ecCceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCC-CCCEEEEEEcc---------CCCcEEEEEECC
Confidence 6777 56677889999999999999777776 689988876554431 12333221100 001234699999
Q ss_pred cccCCC-ceEEEEEEEeCCcceeeceEEE
Q psy14532 81 VQKDHD-RGVYWCTATNKQGRSSSQNVHI 108 (258)
Q Consensus 81 ~~~~~d-~G~Y~C~~~~~~~~~~~~~~~l 108 (258)
+ ...| .|.|.|.+.|..|... ..+.|
T Consensus 71 ~-~~~d~~g~Y~C~a~N~~G~d~-~~i~L 97 (98)
T cd05898 71 I-MEADFQTHYNCTAWNSFGSGT-AIIQL 97 (98)
T ss_pred C-ccccCCcEEEEEEEeCCccce-EEEEe
Confidence 9 7656 8999999999998876 54444
No 176
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=99.31 E-value=1.4e-11 Score=76.98 Aligned_cols=87 Identities=16% Similarity=0.269 Sum_probs=56.1
Q ss_pred ceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceee----eeCCcEEEeecccC
Q psy14532 9 FIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKV----FPNGTLLIENVQKD 84 (258)
Q Consensus 9 ~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~ 84 (258)
+.++.+.+|++++|.|.+.+.|.+.+.|++.+..+.... ...... ..|... ....+|.|.++ +.
T Consensus 4 ~~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~--~~~~~~---------~~r~~~~~~~~~~~sL~I~~v-~~ 71 (95)
T cd07701 4 TQNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFD--DKKALR---------DNRIELVRASWHELSISISDV-SL 71 (95)
T ss_pred cceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEc--Cccccc---------CCCEEEEECCCCcEEEEECcC-Cc
Confidence 467889999999999999998889999997432111000 000000 011111 12357999999 99
Q ss_pred CCceEEEEEEEeCCcceeeceEEEE
Q psy14532 85 HDRGVYWCTATNKQGRSSSQNVHIS 109 (258)
Q Consensus 85 ~d~G~Y~C~~~~~~~~~~~~~~~l~ 109 (258)
+|+|.|.|.+...... . ....|.
T Consensus 72 ~DsG~Y~C~~~t~~~~-~-~~~~l~ 94 (95)
T cd07701 72 SDEGQYTCSLFTMPVK-T-SKAYLT 94 (95)
T ss_pred ccCEEEEEEeEeecCc-c-EEEEEE
Confidence 9999999999875433 2 444444
No 177
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=99.30 E-value=1.9e-11 Score=75.87 Aligned_cols=73 Identities=27% Similarity=0.389 Sum_probs=52.8
Q ss_pred CCcEEEEeeeCcccCceEEEEeCC----cccCCCc--ceEEec----------CCeEEEEecccCCCCcEEEEEEEeCCC
Q psy14532 127 GEPLYLGCPVAGYPIESITWQKGV----QQLPLNR--RQKVFP----------NGTLLIENVQKDHDRGVYWCTATNKQG 190 (258)
Q Consensus 127 g~~~~l~C~~~~~~~~~i~W~~~~----~~~~~~~--~~~~~~----------~~~l~i~~~~~~~~~g~y~C~~~~~~~ 190 (258)
|+.+.|.|.+.+.|.|.++|+++. ..+.... ...... .+.|.|.+++. +|+|.|+|.|.|..|
T Consensus 1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~-~D~G~Y~C~A~N~~G 79 (90)
T cd05858 1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTF-EDAGEYTCLAGNSIG 79 (90)
T ss_pred CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCH-HHCEEEEEEEEeCCC
Confidence 678999999999999999999842 2222111 111111 14699999998 999999999999998
Q ss_pred CCccceEEEEe
Q psy14532 191 RSSSQNVHISV 201 (258)
Q Consensus 191 ~~~~~~~~l~v 201 (258)
. ....+.|.|
T Consensus 80 ~-~~~~a~L~V 89 (90)
T cd05858 80 I-SHHSAWLTV 89 (90)
T ss_pred c-ccceEEEEE
Confidence 4 455566655
No 178
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.30 E-value=2.1e-11 Score=74.22 Aligned_cols=72 Identities=40% Similarity=0.587 Sum_probs=53.2
Q ss_pred CCcEEEEeeeCcccCceEEEEeCCc---cc--CCC---cceEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEE
Q psy14532 127 GEPLYLGCPVAGYPIESITWQKGVQ---QL--PLN---RRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVH 198 (258)
Q Consensus 127 g~~~~l~C~~~~~~~~~i~W~~~~~---~~--~~~---~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~ 198 (258)
|+.+.|.|.+.|.|.|.++|+++.. .+ ... ........+.|.|.++.. +|+|.|+|.+.|..|. .+..+.
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~-~D~G~Y~C~a~N~~G~-~~~~~~ 78 (81)
T cd05765 1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQP-QDAGLYTCTARNSGGL-LRANFP 78 (81)
T ss_pred CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCc-ccCEEEEEEEecCCce-EEEEEE
Confidence 6889999999999999999999742 11 111 112233456899999998 9999999999999884 445555
Q ss_pred EE
Q psy14532 199 IS 200 (258)
Q Consensus 199 l~ 200 (258)
|.
T Consensus 79 l~ 80 (81)
T cd05765 79 LS 80 (81)
T ss_pred Ee
Confidence 54
No 179
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=99.30 E-value=2.1e-11 Score=76.12 Aligned_cols=91 Identities=20% Similarity=0.326 Sum_probs=61.3
Q ss_pred CCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEEEEEEe
Q psy14532 17 GPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATN 96 (258)
Q Consensus 17 g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~~~~ 96 (258)
|++|+|.|.........+.|++............ ............+..|..+..+++|.|.++ +.+|+|.|+|.+..
T Consensus 1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~-~~~~~~~~~~~~~~~R~~~~~~~sL~I~~l-~~~DsG~Y~c~v~~ 78 (92)
T cd05741 1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIAS-YIATNSTVFGPAYSGRETIYPNGSLLIQNL-TKEDSGTYTLQIIS 78 (92)
T ss_pred CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEE-EecCCceeECCCcCCeEEEcCCceEEEccC-CchhcEEEEEEEEc
Confidence 7899999988765566999999754332211000 001122222334566777777899999999 99999999999998
Q ss_pred CCcceeeceEEEE
Q psy14532 97 KQGRSSSQNVHIS 109 (258)
Q Consensus 97 ~~~~~~~~~~~l~ 109 (258)
..+......+.|.
T Consensus 79 ~~~~~~~~~~~l~ 91 (92)
T cd05741 79 TNGVTENAKFFLR 91 (92)
T ss_pred CCCcEEEEEEEEE
Confidence 8765554555554
No 180
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=99.29 E-value=2.3e-11 Score=75.63 Aligned_cols=68 Identities=28% Similarity=0.445 Sum_probs=52.2
Q ss_pred cCCcEEEEeeeCcccCceEEEEeCCcccCCC--cceEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCcc
Q psy14532 126 AGEPLYLGCPVAGYPIESITWQKGVQQLPLN--RRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSS 194 (258)
Q Consensus 126 ~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~--~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~ 194 (258)
.|+.+.|.|.+.|.|.+.++|++++..+... ..+. ..++.|.|.++...+|.|.|+|.|.|..|...+
T Consensus 18 ~~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~~-~~~~~L~i~~~~~~~d~G~Y~C~a~N~~G~~~S 87 (91)
T cd04967 18 DEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYS-LVGGNLVISNPSKAKDAGRYQCLASNIVGTVLS 87 (91)
T ss_pred CCCEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCEE-EECCEEEEecCCccCCCEEEEEEEEcCCCEEEe
Confidence 3467999999999999999999999877432 2232 345788888776338999999999999885443
No 181
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=99.29 E-value=3.2e-11 Score=74.68 Aligned_cols=79 Identities=24% Similarity=0.428 Sum_probs=60.8
Q ss_pred CcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCc----ceEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccce
Q psy14532 121 NVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNR----RQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQN 196 (258)
Q Consensus 121 ~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~----~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~ 196 (258)
...+.+|+.+.|.|.+.+ |.+.+.|++++..+.... +... ..+.|.|.++.. +|+|.|.|.+.+..+......
T Consensus 5 ~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~~-~~~~L~I~~~~~-~D~G~Y~C~a~~~~~~~~~~~ 81 (89)
T cd04979 5 VVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLLV-TEDGLLIRSVSP-ADAGVYTCQSVEHGFKQTLAT 81 (89)
T ss_pred EEEEECCCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEEE-cCCCEEEccCCH-HHCEEEEEEEecCccceeEeE
Confidence 456788999999999877 778999999987765442 2322 345689999997 999999999998765455666
Q ss_pred EEEEee
Q psy14532 197 VHISVT 202 (258)
Q Consensus 197 ~~l~v~ 202 (258)
+.|.|.
T Consensus 82 ~~l~V~ 87 (89)
T cd04979 82 YSLNVL 87 (89)
T ss_pred EEEEEe
Confidence 777664
No 182
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.29 E-value=2.6e-11 Score=72.58 Aligned_cols=71 Identities=25% Similarity=0.382 Sum_probs=55.2
Q ss_pred CCCcceecCCcEEEEeeeCcccC-ceEEEEeCCcccCCCcceEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceE
Q psy14532 119 MGNVSAIAGEPLYLGCPVAGYPI-ESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNV 197 (258)
Q Consensus 119 ~~~~~~~~g~~~~l~C~~~~~~~-~~i~W~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~ 197 (258)
++...+.+|+.++|.|.+.+.|. ..+.|++++..+. .....|.|.++ . +|+|.|+|.+.+. ..+..+
T Consensus 7 P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~-------~~~~~l~i~~~-~-~dsG~Y~C~a~~~---~~S~~v 74 (78)
T cd05752 7 PPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLE-------TTTNSYRIRAA-N-NDSGEYRCQTQGS---SLSDPV 74 (78)
T ss_pred CCCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEee-------ccCCeEEEeec-c-cCCEEeEEECCCC---cCCCCE
Confidence 44567889999999999988775 4799999998762 13567899999 6 9999999999875 345555
Q ss_pred EEEe
Q psy14532 198 HISV 201 (258)
Q Consensus 198 ~l~v 201 (258)
.|.|
T Consensus 75 ~l~V 78 (78)
T cd05752 75 HLEV 78 (78)
T ss_pred EEeC
Confidence 5543
No 183
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.28 E-value=2.7e-11 Score=73.62 Aligned_cols=75 Identities=27% Similarity=0.376 Sum_probs=59.7
Q ss_pred CcceecCCcEEEEeeeCc-ccCceEEEEeCCcccCCCcceEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEE
Q psy14532 121 NVSAIAGEPLYLGCPVAG-YPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHI 199 (258)
Q Consensus 121 ~~~~~~g~~~~l~C~~~~-~~~~~i~W~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l 199 (258)
...+.+|+.++|.|.+.+ .+...+.|++++..+... .....|.|.+++. +|+|.|+|.+.+..++..+..+.|
T Consensus 8 ~~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~~-----~~~~~l~I~~~~~-~dsG~Y~C~~~~~~~~~~s~~~~i 81 (83)
T cd05753 8 SRVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKYS-----HSNSNLSIPQATL-SDSGSYHCSGIIGSYDYSSEPVSI 81 (83)
T ss_pred cceecCCCCEEEEeeCCCCCcceEEEEEECCeEcccc-----CCCceEEECccCH-HHCEEEEEEEEeCCceecCCCEEE
Confidence 346889999999999854 556789999998765421 1346799999998 999999999999988777777776
Q ss_pred Ee
Q psy14532 200 SV 201 (258)
Q Consensus 200 ~v 201 (258)
.|
T Consensus 82 ~~ 83 (83)
T cd05753 82 TV 83 (83)
T ss_pred EC
Confidence 54
No 184
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=99.27 E-value=4.9e-11 Score=71.54 Aligned_cols=71 Identities=28% Similarity=0.485 Sum_probs=54.8
Q ss_pred EEEEeeeCcccCceEEEEeCCcccCCCc--ceEEecC-CeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEee
Q psy14532 130 LYLGCPVAGYPIESITWQKGVQQLPLNR--RQKVFPN-GTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVT 202 (258)
Q Consensus 130 ~~l~C~~~~~~~~~i~W~~~~~~~~~~~--~~~~~~~-~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~ 202 (258)
+.|.|.+.|.|.|.+.|++++..+.... +.....+ ..|.|.++.. +|.|.|+|.+.|..|. ....+.|.|.
T Consensus 1 ~~L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~-~D~G~Y~C~a~N~~G~-~~~~~~l~V~ 74 (76)
T cd05736 1 ASLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRY-EDTGAYTCIAKNEAGV-DEDISSLFVE 74 (76)
T ss_pred CEeEeEeeecCCCEEEEEECCEECCCCCCccEEEeCCCCEEEECcCCc-ccCEEEEEEEEcCCCC-cceEEEEEEE
Confidence 3689999999999999999988775443 2333333 3699999997 9999999999999884 4466666654
No 185
>PHA03376 BARF1; Provisional
Probab=99.27 E-value=9.7e-11 Score=79.14 Aligned_cols=133 Identities=18% Similarity=0.212 Sum_probs=77.4
Q ss_pred eeeecCCCceEEEEEEee---cCCCeEEEeeCC----EeCcCCccccceecccceeeccccccceee---eeCCcEEEee
Q psy14532 11 QQTLQPGPPVSLKCIATG---NPTPHISWKLDG----YPLAGDRHENKNRIGEARVQQLPLNRRQKV---FPNGTLLIEN 80 (258)
Q Consensus 11 ~~~~~~g~~v~l~C~~~~---~~~~~v~W~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~i~~ 80 (258)
.+.+..|+.+.|+|.... .+...|+|+|.+ ..+-... +..... .+..+..+..+ ..+-+|.|.+
T Consensus 20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~--ggdVv~----~QmEyRGrtD~~~~~gnvsLvI~~ 93 (221)
T PHA03376 20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRM--HHDVIF----IEWPFRGFFDIHRSANTFFLVVTA 93 (221)
T ss_pred chhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEc--CCeeee----eeeccccEEEEEecCCeEEEEEEe
Confidence 567889999999998652 245589999953 2111110 111111 11122223222 2345789999
Q ss_pred cccCCCceEEEEEEEeCCcceeeceEEEEEecCCeecc-CCCcceecCCcEEEEeeeCcccCceEEEEeCCc
Q psy14532 81 VQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRP-MGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQ 151 (258)
Q Consensus 81 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~-~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~ 151 (258)
+ +.+|.|+|+|.+........ +.-.|.+..+-.+.. ........-+...+.|.+.|+|.|.+.|..+..
T Consensus 94 l-~lSDdGtY~C~fQkge~~~~-k~ehLt~V~~~~Lsv~a~~~dFp~~~~~~i~C~sggfP~P~~~Wle~~~ 163 (221)
T PHA03376 94 A-NISHDGNYLCRMKLGETEVT-KQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEG 163 (221)
T ss_pred e-eecCCceEEEEEEcCCCcee-eeeeeeeeecceEEEEeccccCCCCCeeEEEEecCCcCCchheeccccC
Confidence 9 99999999999987654333 222333332211111 000011124667899998889999999987654
No 186
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.27 E-value=1.9e-11 Score=75.37 Aligned_cols=73 Identities=26% Similarity=0.406 Sum_probs=54.0
Q ss_pred eeeeecCCCceEEEEEE-eecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCce
Q psy14532 10 IQQTLQPGPPVSLKCIA-TGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRG 88 (258)
Q Consensus 10 ~~~~~~~g~~v~l~C~~-~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G 88 (258)
....+.+|+.++|.|.. .+.|.+.+.|++++.++.... ..+ +.....+|.|.|.++ +.+|+|
T Consensus 11 ~~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~-d~r---------------~~~~~~~G~L~fs~v-~~~D~g 73 (96)
T cd05727 11 DEVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPE-DGR---------------RFVSQTNGNLYIAKV-EASDRG 73 (96)
T ss_pred CceeeeeCCcEEEeeCCCCCCCCCEEEEEECCccccccc-CCC---------------eEEeCCCCcEEEeec-CHhhCc
Confidence 44668899999999975 457889999999975432211 011 111224789999999 999999
Q ss_pred EEEEEEEeCCc
Q psy14532 89 VYWCTATNKQG 99 (258)
Q Consensus 89 ~Y~C~~~~~~~ 99 (258)
.|.|.|.+...
T Consensus 74 ~Y~C~A~n~~~ 84 (96)
T cd05727 74 NYSCFVSSPSS 84 (96)
T ss_pred eeEEEEEeccc
Confidence 99999998754
No 187
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.26 E-value=2.6e-11 Score=74.58 Aligned_cols=79 Identities=23% Similarity=0.304 Sum_probs=59.6
Q ss_pred CCcce-eeceeeeecCCCceEEEEE-EeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEe
Q psy14532 2 HPQLI-YKFIQQTLQPGPPVSLKCI-ATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIE 79 (258)
Q Consensus 2 ~p~~~-~~~~~~~~~~g~~v~l~C~-~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~ 79 (258)
.|.|. .....+.+.+|+.+.|.|. ..+.|.+.+.|++++...... ..|..+..+|.|.|.
T Consensus 2 ~~~~~~~~~~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~------------------~~Ri~~~~~GnL~fs 63 (95)
T cd05845 2 TPKWPKEKIRPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQ------------------DERVSMGQNGNLYFA 63 (95)
T ss_pred CCcCCccccceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccccc------------------cccEEECCCceEEEE
Confidence 45553 3457788999999999997 588899999999765322111 123344467999999
Q ss_pred ecccCCCce-EEEEEEEeCCc
Q psy14532 80 NVQKDHDRG-VYWCTATNKQG 99 (258)
Q Consensus 80 ~~~~~~d~G-~Y~C~~~~~~~ 99 (258)
++ ...|.| .|.|.+.+...
T Consensus 64 ~v-~~~D~g~~Y~C~a~~~~~ 83 (95)
T cd05845 64 NV-EEQDSHPDYICHAHFPGL 83 (95)
T ss_pred EE-ehhhCCCCeEEEEEcccc
Confidence 99 999999 89999998753
No 188
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=99.25 E-value=2.7e-11 Score=72.57 Aligned_cols=61 Identities=28% Similarity=0.513 Sum_probs=49.0
Q ss_pred EEEEeeeCc-ccCceEEEEeCCcccCCCcceE---E---ecCCeEEEEecccCCCCcEEEEEEEeCCCC
Q psy14532 130 LYLGCPVAG-YPIESITWQKGVQQLPLNRRQK---V---FPNGTLLIENVQKDHDRGVYWCTATNKQGR 191 (258)
Q Consensus 130 ~~l~C~~~~-~~~~~i~W~~~~~~~~~~~~~~---~---~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~ 191 (258)
+.|.|.+.+ .|.+.+.|++++..+....... + ...+.|.|.++.. +|.|.|+|.|.|..|.
T Consensus 1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~-~D~G~Y~C~a~N~~G~ 68 (75)
T cd05750 1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKL-ADSGEYTCVVENILGN 68 (75)
T ss_pred CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCc-ccCeEEEEEEEEcCCc
Confidence 468999999 8999999999998876543322 2 1235799999997 9999999999999884
No 189
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=99.24 E-value=5.6e-11 Score=71.27 Aligned_cols=69 Identities=26% Similarity=0.472 Sum_probs=48.3
Q ss_pred eEEEEEEee-cCCCeEEEeeCCEeCcCCcc-ccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEEEEEEeC
Q psy14532 20 VSLKCIATG-NPTPHISWKLDGYPLAGDRH-ENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNK 97 (258)
Q Consensus 20 v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~~~~~ 97 (258)
+.|.|.+.+ .|.+.+.|+++++.+..... ..++.+. .....++|.|.++ ...|+|.|+|.+.|.
T Consensus 1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~-------------~~~~~~~L~I~~~-~~~DsG~Y~C~a~N~ 66 (76)
T cd05895 1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIR-------------KKKKSSELQISKA-SLADNGEYKCMVSSK 66 (76)
T ss_pred CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEE-------------eCCcEEEEEECcC-CcccCEEEEEEEEeC
Confidence 579999865 57789999999887753210 0111100 0112357999999 999999999999999
Q ss_pred Cccee
Q psy14532 98 QGRSS 102 (258)
Q Consensus 98 ~~~~~ 102 (258)
.|...
T Consensus 67 ~g~~~ 71 (76)
T cd05895 67 LGNDS 71 (76)
T ss_pred CCcee
Confidence 87655
No 190
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.22 E-value=9.4e-11 Score=72.30 Aligned_cols=70 Identities=30% Similarity=0.419 Sum_probs=55.7
Q ss_pred CCcceecCCcEEEEeee-CcccCceEEEEeCCccc--CCCcceEEe-cCCeEEEEecccCCCCcEEEEEEEeCCC
Q psy14532 120 GNVSAIAGEPLYLGCPV-AGYPIESITWQKGVQQL--PLNRRQKVF-PNGTLLIENVQKDHDRGVYWCTATNKQG 190 (258)
Q Consensus 120 ~~~~~~~g~~~~l~C~~-~~~~~~~i~W~~~~~~~--~~~~~~~~~-~~~~l~i~~~~~~~~~g~y~C~~~~~~~ 190 (258)
....+.+|+.+.|.|.. .+.|.+.+.|++++... ....+..+. .+|.|.+.++.. +|.|.|+|.|.|...
T Consensus 11 ~~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~~~~G~L~fs~v~~-~D~g~Y~C~A~n~~~ 84 (96)
T cd05727 11 DEVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVSQTNGNLYIAKVEA-SDRGNYSCFVSSPSS 84 (96)
T ss_pred CceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEeCCCCcEEEeecCH-hhCceeEEEEEeccc
Confidence 34568899999999976 67899999999997653 223333343 479999999998 999999999999864
No 191
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.21 E-value=1.7e-10 Score=71.29 Aligned_cols=72 Identities=22% Similarity=0.253 Sum_probs=51.8
Q ss_pred eeeecCCCceEEEEEE-e----ecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCC
Q psy14532 11 QQTLQPGPPVSLKCIA-T----GNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDH 85 (258)
Q Consensus 11 ~~~~~~g~~v~l~C~~-~----~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~ 85 (258)
.+.+.+|.+..|.|.- . ..+.+.+.|||++.++..... +... ......|.|.++ ..+
T Consensus 4 ~~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~--~~~~---------------~~~~~~L~I~~v-~~~ 65 (95)
T cd05897 4 PQILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNE--KFYS---------------LKGSTYLHIIDV-SLN 65 (95)
T ss_pred eeEeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCc--ceEe---------------cCCCCEEEEEEc-Chh
Confidence 3567899999999973 2 235669999999988764311 1100 011346999999 999
Q ss_pred CceEEEEEEEeCCcc
Q psy14532 86 DRGVYWCTATNKQGR 100 (258)
Q Consensus 86 d~G~Y~C~~~~~~~~ 100 (258)
|+|.|+|.+.+..+.
T Consensus 66 D~G~YtC~~~~~~~g 80 (95)
T cd05897 66 DSGYYTCKLQFTHEG 80 (95)
T ss_pred hCEEEEEEEEEeeCC
Confidence 999999999997644
No 192
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=99.21 E-value=2e-10 Score=71.04 Aligned_cols=85 Identities=18% Similarity=0.307 Sum_probs=55.1
Q ss_pred eeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEE
Q psy14532 11 QQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVY 90 (258)
Q Consensus 11 ~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y 90 (258)
.+.+.+|+++.|.|.. +.|.+.+.||+.+....... ... ...+. ...+++|.|.++ +.+|+|.|
T Consensus 5 ~~~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~-----~~~--------~~~r~-~~~~~~L~I~~~-~~~DsG~Y 68 (91)
T cd05871 5 VVYGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKE-----EVK--------TEERL-IHTERGLLLRSL-QRSDAGVY 68 (91)
T ss_pred EEEEecCCcEEEEEEC-CCCCceEEEEEECCCCCccc-----ccc--------ccccE-EEecCeEEEeeC-ChhHCEEE
Confidence 3567899999999986 47888999998432111000 000 00111 123567999999 99999999
Q ss_pred EEEEEeCCcceeeceEEEEEe
Q psy14532 91 WCTATNKQGRSSSQNVHISVT 111 (258)
Q Consensus 91 ~C~~~~~~~~~~~~~~~l~v~ 111 (258)
+|.+.+.........+.|.|.
T Consensus 69 ~C~a~~~~~~~~~~~~~l~v~ 89 (91)
T cd05871 69 TCTAVEHSFSQTLAKYTLHVI 89 (91)
T ss_pred EEEEEccCCeEEEEEEEEEEe
Confidence 999985433333257777765
No 193
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=99.20 E-value=1.9e-10 Score=66.13 Aligned_cols=62 Identities=40% Similarity=0.706 Sum_probs=48.4
Q ss_pred CCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEEEEEE
Q psy14532 16 PGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTAT 95 (258)
Q Consensus 16 ~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~~~ 95 (258)
+|++++|.|.+.+.+.+.+.|++++..+... . ........|.|.++ ...|+|.|+|.+.
T Consensus 1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~---~-----------------~~~~~~~~L~i~~~-~~~d~G~Y~C~~~ 59 (63)
T smart00408 1 EGQSVTLTCPAEGDPVPNITWLKDGKPLPES---N-----------------RLSASGSTLTIKSV-SLEDSGEYTCVAE 59 (63)
T ss_pred CCceEEEEeeCccCCCCeEEEEECCEECCCC---C-----------------EEecCCcEEEEeeC-CcccCEEEEEEEe
Confidence 5899999999887888899999988766511 0 01123567999999 9999999999998
Q ss_pred eCC
Q psy14532 96 NKQ 98 (258)
Q Consensus 96 ~~~ 98 (258)
+..
T Consensus 60 n~~ 62 (63)
T smart00408 60 NSA 62 (63)
T ss_pred cCC
Confidence 764
No 194
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=99.19 E-value=1.9e-10 Score=71.12 Aligned_cols=68 Identities=24% Similarity=0.413 Sum_probs=54.6
Q ss_pred cceecCCcEEEEeeeCc-c----cCceEEEEeCCcccCCCcceEEecCCeEEEEecccCCCCcEEEEEEEeCCCC
Q psy14532 122 VSAIAGEPLYLGCPVAG-Y----PIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGR 191 (258)
Q Consensus 122 ~~~~~g~~~~l~C~~~~-~----~~~~i~W~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~ 191 (258)
..+..|....|.|...+ . |.+.+.|++++..+....... ..++.|.|.++.. +|+|.|+|.+.+..+.
T Consensus 5 ~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~~-~~~~~L~I~~v~~-~DsG~YtC~~~n~~~~ 77 (92)
T cd05757 5 QILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKRF-VKGSKLLIQNVTE-EDAGNYTCKLTFTHNG 77 (92)
T ss_pred EEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccEE-ecCCEEEEeeCCh-hhCEEEEEEEEecCCC
Confidence 45678899999998643 2 567999999999887554433 3678899999997 9999999999998753
No 195
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=99.18 E-value=1.1e-10 Score=71.40 Aligned_cols=73 Identities=22% Similarity=0.333 Sum_probs=52.8
Q ss_pred CCcEEEEeeeCcc--cCceEEEEeCCcccCCCcce----E----EecCCeEEEEecccCCCCcEEEEEEEeCCCCCccce
Q psy14532 127 GEPLYLGCPVAGY--PIESITWQKGVQQLPLNRRQ----K----VFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQN 196 (258)
Q Consensus 127 g~~~~l~C~~~~~--~~~~i~W~~~~~~~~~~~~~----~----~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~ 196 (258)
|+.+.|.|.+.+. |.+.+.|.+++......... . ....+.|.|.+++. +|+|.|+|.+.|..+. .+.+
T Consensus 1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~-~DsG~Y~C~a~n~~~~-~~~s 78 (84)
T cd05742 1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATL-KDSGTYTCAASSGTMD-QKES 78 (84)
T ss_pred CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCCh-hhCEEEEEEEccCCCc-eEEE
Confidence 6889999999988 78899999876544322110 0 01234799999998 9999999999998874 4455
Q ss_pred EEEEe
Q psy14532 197 VHISV 201 (258)
Q Consensus 197 ~~l~v 201 (258)
..|.|
T Consensus 79 ~~v~v 83 (84)
T cd05742 79 TKVNI 83 (84)
T ss_pred EEEEE
Confidence 55544
No 196
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=99.18 E-value=5.3e-10 Score=69.53 Aligned_cols=85 Identities=25% Similarity=0.307 Sum_probs=61.1
Q ss_pred CCeeccCCCcceecCCcEEEEeeeCcccCc-eEEEEeCCcccCCC--cceEEec-------CCeEEEEecccCCCCcEEE
Q psy14532 113 APFVRPMGNVSAIAGEPLYLGCPVAGYPIE-SITWQKGVQQLPLN--RRQKVFP-------NGTLLIENVQKDHDRGVYW 182 (258)
Q Consensus 113 ~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-~i~W~~~~~~~~~~--~~~~~~~-------~~~l~i~~~~~~~~~g~y~ 182 (258)
+|.+.......+.+|+.+.|.|.+.+.|.| .|.|..++..+... .++.+.. ...|.|.++...++.|.|.
T Consensus 2 pP~i~~~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y~ 81 (98)
T cd05898 2 PPIISSEQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHYN 81 (98)
T ss_pred CCEEecCceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEEE
Confidence 455556667788999999999999888876 67888877665432 3444432 2369999987523479999
Q ss_pred EEEEeCCCCCccceEE
Q psy14532 183 CTATNKQGRSSSQNVH 198 (258)
Q Consensus 183 C~~~~~~~~~~~~~~~ 198 (258)
|.|.|..|. ....+.
T Consensus 82 C~a~N~~G~-d~~~i~ 96 (98)
T cd05898 82 CTAWNSFGS-GTAIIQ 96 (98)
T ss_pred EEEEeCCcc-ceEEEE
Confidence 999999985 334443
No 197
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=99.17 E-value=3.7e-10 Score=69.94 Aligned_cols=85 Identities=13% Similarity=0.188 Sum_probs=56.6
Q ss_pred eeeeecCCCceEEEEEEe-----------ecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEE
Q psy14532 10 IQQTLQPGPPVSLKCIAT-----------GNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLI 78 (258)
Q Consensus 10 ~~~~~~~g~~v~l~C~~~-----------~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i 78 (258)
....+.+|+.+.|.|... ......+.|||++..+....... +...........|.|
T Consensus 8 ~~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~-------------~~~~Ri~~~~~~Lwf 74 (104)
T cd05896 8 KKYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEII-------------FDGVRMSKEEDSIWF 74 (104)
T ss_pred eeEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCccc-------------ccceeEEEeCCEEEE
Confidence 346789999999999861 11233799999875444331100 000112234668999
Q ss_pred eecccCCCceEEEEEEEeCCcceeeceEEEE
Q psy14532 79 ENVQKDHDRGVYWCTATNKQGRSSSQNVHIS 109 (258)
Q Consensus 79 ~~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~ 109 (258)
.++ ..+|+|.|+|++.|...... .++.|+
T Consensus 75 ~Pa-~~eDSG~Y~C~~rN~t~C~~-~~i~l~ 103 (104)
T cd05896 75 RPA-ELQDSGLYTCVLRNSTYCMK-VSMSLT 103 (104)
T ss_pred EeC-ChhhCeEEEEEECCCCcceE-EEEEEE
Confidence 999 99999999999999876555 555554
No 198
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=99.17 E-value=2.6e-10 Score=69.97 Aligned_cols=69 Identities=28% Similarity=0.401 Sum_probs=55.3
Q ss_pred CCCcceecCCcEEEEeeeCc-ccCceEEEEeCCcccCCCcceEEecCCeEEEEecccCCCCcEEEEEEEeCCCC
Q psy14532 119 MGNVSAIAGEPLYLGCPVAG-YPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGR 191 (258)
Q Consensus 119 ~~~~~~~~g~~~~l~C~~~~-~~~~~i~W~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~ 191 (258)
+....+.+|+.++|.|.+.+ .|.+.+.|++++..+... ....++.|.|.++.. +|+|.|.|.+.|..+.
T Consensus 8 p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~---~~~~~~~L~I~~v~~-~DsG~Y~C~a~n~~g~ 77 (85)
T cd05754 8 PRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSR---AMDFNGILTIRNVQL-SDAGTYVCTGSNMLDT 77 (85)
T ss_pred CCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCc---ccccCCEEEECCCCH-HHCEEEEEEEeccCCe
Confidence 45567889999999999865 678899999988665332 223467899999997 9999999999998774
No 199
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=99.16 E-value=2e-10 Score=72.02 Aligned_cols=91 Identities=16% Similarity=0.215 Sum_probs=54.8
Q ss_pred ceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCce
Q psy14532 9 FIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRG 88 (258)
Q Consensus 9 ~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G 88 (258)
..++.+.+|++++|.|.+.+.+.+.+.|++.+..+.... ....... .++..........+|.|.++ +.+|+|
T Consensus 4 ~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~--~~~~~~~-----~r~~~~~~~~~~~~L~I~~v-~~~DsG 75 (95)
T cd05717 4 TQDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFN--DKRALRD-----NRIQLVNFSANELSISISNV-SLSDEG 75 (95)
T ss_pred CCcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEec--ccccccc-----CcEEEEcCCCCeeEEEEccC-CcccCE
Confidence 356778999999999999887788999986432110000 0000000 00100000112357999999 999999
Q ss_pred EEEEEEEeCCcceeeceEEEE
Q psy14532 89 VYWCTATNKQGRSSSQNVHIS 109 (258)
Q Consensus 89 ~Y~C~~~~~~~~~~~~~~~l~ 109 (258)
.|+|.+...... . ..+.|+
T Consensus 76 ~Y~C~~~~~~~~-~-~~~~~~ 94 (95)
T cd05717 76 RYTCSLYTMPVQ-T-AKATVT 94 (95)
T ss_pred EEEEEEecCCCc-e-EEEEEE
Confidence 999999876533 2 444444
No 200
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.15 E-value=2.6e-10 Score=70.19 Aligned_cols=70 Identities=23% Similarity=0.299 Sum_probs=58.7
Q ss_pred CCcceecCCcEEEEee-eCcccCceEEEEeCCcc-cCCCcceEEecCCeEEEEecccCCCCc-EEEEEEEeCCC
Q psy14532 120 GNVSAIAGEPLYLGCP-VAGYPIESITWQKGVQQ-LPLNRRQKVFPNGTLLIENVQKDHDRG-VYWCTATNKQG 190 (258)
Q Consensus 120 ~~~~~~~g~~~~l~C~-~~~~~~~~i~W~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~~~~g-~y~C~~~~~~~ 190 (258)
....+.+|+.+.|.|. ..|.|.+.|.|+.++.. +....+..+..+|.|.|.++.. .|.| .|.|.|.+...
T Consensus 11 ~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~~~Ri~~~~~GnL~fs~v~~-~D~g~~Y~C~a~~~~~ 83 (95)
T cd05845 11 RPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQDERVSMGQNGNLYFANVEE-QDSHPDYICHAHFPGL 83 (95)
T ss_pred ceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccccccccEEECCCceEEEEEEeh-hhCCCCeEEEEEcccc
Confidence 4567889999999997 58899999999986543 4456677777889999999997 9999 79999998753
No 201
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=99.15 E-value=4.5e-10 Score=69.00 Aligned_cols=77 Identities=30% Similarity=0.481 Sum_probs=57.0
Q ss_pred cceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcceEE----ecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceE
Q psy14532 122 VSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKV----FPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNV 197 (258)
Q Consensus 122 ~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~----~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~ 197 (258)
..+..|+.+.|.|.+.+.|.+.+.|++++..+........ .....|.|.++.. +|.|.|.|.+.|..+. .+.++
T Consensus 4 ~~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-~d~g~Y~C~~~n~~g~-~~~~~ 81 (85)
T cd05729 4 HAVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVP-SDSGKYTCIVENKYGS-INHTY 81 (85)
T ss_pred eEecCCCcEEEEEEcCCCCCCeEEEEECCEECcccCceeEEEccCcEEEEEEeECCc-ccCEEEEEEEEECCce-EEEEE
Confidence 3456799999999999989899999999877653322221 1123688889987 9999999999998874 44455
Q ss_pred EEE
Q psy14532 198 HIS 200 (258)
Q Consensus 198 ~l~ 200 (258)
.|.
T Consensus 82 ~l~ 84 (85)
T cd05729 82 KVD 84 (85)
T ss_pred EEe
Confidence 444
No 202
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=99.15 E-value=3.9e-10 Score=64.80 Aligned_cols=62 Identities=35% Similarity=0.646 Sum_probs=50.0
Q ss_pred cCCcEEEEeeeCcccCceEEEEeCCcccCCCcceEEecCCeEEEEecccCCCCcEEEEEEEeCC
Q psy14532 126 AGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQ 189 (258)
Q Consensus 126 ~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~ 189 (258)
+|+.+.|.|.+.+.+.+.+.|++++..+. ...........|.|.++.. .|.|.|+|.+.+..
T Consensus 1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~-~~~~~~~~~~~L~i~~~~~-~d~G~Y~C~~~n~~ 62 (63)
T smart00408 1 EGQSVTLTCPAEGDPVPNITWLKDGKPLP-ESNRLSASGSTLTIKSVSL-EDSGEYTCVAENSA 62 (63)
T ss_pred CCceEEEEeeCccCCCCeEEEEECCEECC-CCCEEecCCcEEEEeeCCc-ccCEEEEEEEecCC
Confidence 47889999998888888999999887776 2222334556899999987 99999999998864
No 203
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=99.15 E-value=4e-10 Score=68.75 Aligned_cols=75 Identities=24% Similarity=0.406 Sum_probs=53.2
Q ss_pred CCcEEEEeeeCcccCceEEEEeCCcccCCCc----ceEEe---cCCeEEEEecccCCCCcEEEEEEEeCCC-CCccceEE
Q psy14532 127 GEPLYLGCPVAGYPIESITWQKGVQQLPLNR----RQKVF---PNGTLLIENVQKDHDRGVYWCTATNKQG-RSSSQNVH 198 (258)
Q Consensus 127 g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~----~~~~~---~~~~l~i~~~~~~~~~g~y~C~~~~~~~-~~~~~~~~ 198 (258)
|+++.|.|.+.+.|.+.+.|++.++...... ...+. ....|.|.+++. +|+|.|.|.+.+... ...+.++.
T Consensus 1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~-~DsG~Y~C~a~n~~~~~~~~~sv~ 79 (84)
T cd05861 1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATV-EDSGTYECAAHESTQDQKAFKKVN 79 (84)
T ss_pred CCcEEEEEEEECCCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCc-CCCEEEEEEEEECccCcceeEEEE
Confidence 7899999999998889999998665322111 11111 134799999997 999999999998754 23455666
Q ss_pred EEee
Q psy14532 199 ISVT 202 (258)
Q Consensus 199 l~v~ 202 (258)
|.|.
T Consensus 80 i~V~ 83 (84)
T cd05861 80 ITVH 83 (84)
T ss_pred EEEe
Confidence 6654
No 204
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=99.13 E-value=9.5e-10 Score=70.95 Aligned_cols=92 Identities=16% Similarity=0.221 Sum_probs=54.6
Q ss_pred eceeeeecCCCceEEEEEEeec----CCCeEEEeeCCEeCcCCccccceeccccee-eccccccceee-----eeCCcEE
Q psy14532 8 KFIQQTLQPGPPVSLKCIATGN----PTPHISWKLDGYPLAGDRHENKNRIGEARV-QQLPLNRRQKV-----FPNGTLL 77 (258)
Q Consensus 8 ~~~~~~~~~g~~v~l~C~~~~~----~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-----~~~~~l~ 77 (258)
.+..+.+..|++++|.|..... +...|.|.+....-........+..+.... ....+.+|... ..+++|.
T Consensus 4 ~~~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~ 83 (116)
T cd05879 4 TDREVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIV 83 (116)
T ss_pred ccceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEE
Confidence 4566788999999999998653 335899954211000000001111111111 11223333322 3567899
Q ss_pred EeecccCCCceEEEEEEEeCCcc
Q psy14532 78 IENVQKDHDRGVYWCTATNKQGR 100 (258)
Q Consensus 78 i~~~~~~~d~G~Y~C~~~~~~~~ 100 (258)
|.++ +.+|+|.|+|.+.+..+.
T Consensus 84 I~nv-~~sD~G~Y~C~v~n~p~~ 105 (116)
T cd05879 84 IHNL-DYTDNGTFTCDVKNPPDI 105 (116)
T ss_pred EccC-CcccCEEEEEEEEcCCCc
Confidence 9999 999999999999997763
No 205
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=99.12 E-value=3.1e-10 Score=71.25 Aligned_cols=94 Identities=19% Similarity=0.232 Sum_probs=60.3
Q ss_pred cCCCceEEEEEEee-cCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeee-CCcEEEeecccCCCceEEEE
Q psy14532 15 QPGPPVSLKCIATG-NPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFP-NGTLLIENVQKDHDRGVYWC 92 (258)
Q Consensus 15 ~~g~~v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~i~~~~~~~d~G~Y~C 92 (258)
..|++|+|.|.... .....+.|++....+....... ...........+..|..+.. +++|.|.++ +.+|+|.|.|
T Consensus 2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~--~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~-~~~DsG~Y~c 78 (97)
T cd05775 2 ILGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEE--TAPEIIVTDPSYKERVNFSQNDYSLQISNL-KMEDAGSYRA 78 (97)
T ss_pred ccCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCC--CCCccEEeCCCceeeEEecCCceeEEECCC-chHHCEEEEE
Confidence 47999999998764 4456899998743322111000 00111112223333444433 488999999 9999999999
Q ss_pred EEEeCCcceeeceEEEEEe
Q psy14532 93 TATNKQGRSSSQNVHISVT 111 (258)
Q Consensus 93 ~~~~~~~~~~~~~~~l~v~ 111 (258)
.+....+......+.|.|+
T Consensus 79 ~v~~~~~~~~~~~f~L~vy 97 (97)
T cd05775 79 EINTKNGVTITKEFTLHIY 97 (97)
T ss_pred EEEcCCCCeEEEEEEEEeC
Confidence 9998877666677777764
No 206
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=99.12 E-value=1.2e-09 Score=66.89 Aligned_cols=83 Identities=27% Similarity=0.349 Sum_probs=53.7
Q ss_pred CCceEEEEEEeecC--CCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEEEEE
Q psy14532 17 GPPVSLKCIATGNP--TPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTA 94 (258)
Q Consensus 17 g~~v~l~C~~~~~~--~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~~ 94 (258)
|++++|.|.+.+.+ ...+.|...++............ ...........+|.|.++ +..|+|.|+|.+
T Consensus 1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~----------~~~~~~~~~~s~L~I~~~-~~~DsG~Y~C~a 69 (86)
T cd05862 1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENR----------RSLQEHTELSSTLTIENV-TLSDLGRYTCTA 69 (86)
T ss_pred CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceeccccc----------ccccccceeeeEEEEecC-CcccCEEEEEEE
Confidence 78999999998754 45789988765432110000000 000001112457999999 999999999999
Q ss_pred EeCCcceeeceEEEEEe
Q psy14532 95 TNKQGRSSSQNVHISVT 111 (258)
Q Consensus 95 ~~~~~~~~~~~~~l~v~ 111 (258)
.+..+... ....|.|+
T Consensus 70 ~n~~~~~~-~~t~~~V~ 85 (86)
T cd05862 70 SSGQMIAK-NSTIVIVH 85 (86)
T ss_pred eecceEec-ccEEEEEe
Confidence 99876555 66677765
No 207
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=99.11 E-value=1.2e-09 Score=70.73 Aligned_cols=88 Identities=19% Similarity=0.232 Sum_probs=52.9
Q ss_pred eceeeeecCCCceEEEEEEeecC----CCeEEEeeC----CEeCcCCccccceecccceeeccccccceee-----eeCC
Q psy14532 8 KFIQQTLQPGPPVSLKCIATGNP----TPHISWKLD----GYPLAGDRHENKNRIGEARVQQLPLNRRQKV-----FPNG 74 (258)
Q Consensus 8 ~~~~~~~~~g~~v~l~C~~~~~~----~~~v~W~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 74 (258)
.+..+.+.+|++++|.|.....+ ...+.|++. +.... ...+..+........+..|... ..+.
T Consensus 4 ~~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~----v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~ 79 (115)
T cd05880 4 TSKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREES----VFYYHKRPYPPPDGRFKGRVVWDGNIMRRDA 79 (115)
T ss_pred cCceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeE----EEEECCCccccCcccccCeEEEecCCcCCce
Confidence 45677899999999999976432 236999852 11100 0001111111111222233222 2356
Q ss_pred cEEEeecccCCCceEEEEEEEeCCcc
Q psy14532 75 TLLIENVQKDHDRGVYWCTATNKQGR 100 (258)
Q Consensus 75 ~l~i~~~~~~~d~G~Y~C~~~~~~~~ 100 (258)
+|.|.++ +.+|+|.|+|.+.+....
T Consensus 80 sL~I~~v-~~~D~G~Y~C~v~~~~~~ 104 (115)
T cd05880 80 SILIWQL-QPTDNGTYTCQVKNPPDV 104 (115)
T ss_pred EEEEeeC-ChhhCEEEEEEEEeCCCC
Confidence 7999999 999999999999987653
No 208
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=99.11 E-value=8.6e-10 Score=70.60 Aligned_cols=89 Identities=17% Similarity=0.249 Sum_probs=53.7
Q ss_pred CCCceEEEEEEeecC------------CCeEEEeeCC--EeCcCCccccceecccceeeccccccceee------eeCCc
Q psy14532 16 PGPPVSLKCIATGNP------------TPHISWKLDG--YPLAGDRHENKNRIGEARVQQLPLNRRQKV------FPNGT 75 (258)
Q Consensus 16 ~g~~v~l~C~~~~~~------------~~~v~W~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 75 (258)
.|++|+|.|...... .+.|.|+|.. +...... ...........+.+|..+ ..+.+
T Consensus 1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~-----~~~~~~~~~~~f~~R~sl~~~~~~~~~as 75 (112)
T cd05900 1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLV-----ATEGKVRVNTEYLDRVSLPNYPAIPSDAT 75 (112)
T ss_pred CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEE-----EECCeEEECccccCeEEecccCCCCCCcE
Confidence 489999999986432 3589999842 1110000 000000011223333333 24778
Q ss_pred EEEeecccCCCceEEEEEEEeCCcceeeceEEEEEe
Q psy14532 76 LLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVT 111 (258)
Q Consensus 76 l~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~ 111 (258)
|+|.++ +.+|+|.|+|.+.+...-.. ..+.|.|.
T Consensus 76 L~I~nl-~~sDsG~Y~C~V~~g~~~~~-~~v~l~v~ 109 (112)
T cd05900 76 LEITEL-RSNDSGTYRCEVMHGIEDNY-DTVEVQVK 109 (112)
T ss_pred EEEeec-ccccCEEEEEEEecCCCCce-eEEEEEEE
Confidence 999999 99999999999996654444 66666664
No 209
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=99.10 E-value=7.7e-10 Score=68.84 Aligned_cols=68 Identities=25% Similarity=0.367 Sum_probs=52.1
Q ss_pred CCcceecCCcEEEEeeeCcccCceEEEEeCCcccC--------CCcceEEe----cCCeEEEEecccCCCCcEEEEEEEe
Q psy14532 120 GNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLP--------LNRRQKVF----PNGTLLIENVQKDHDRGVYWCTATN 187 (258)
Q Consensus 120 ~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~--------~~~~~~~~----~~~~l~i~~~~~~~~~g~y~C~~~~ 187 (258)
....+.+|+++.|.|.+.+.|.+.+.|++++..+. ...++.+. ....|.|.++.. +|+|.|+|.+..
T Consensus 5 ~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~-~D~G~YtC~~~t 83 (95)
T cd05882 5 QDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQL-SDEGEYTCSIFT 83 (95)
T ss_pred ccEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCc-ccCEEEEEEEEe
Confidence 45678899999999999999999999998765321 11222221 134799999998 999999999987
Q ss_pred C
Q psy14532 188 K 188 (258)
Q Consensus 188 ~ 188 (258)
.
T Consensus 84 ~ 84 (95)
T cd05882 84 M 84 (95)
T ss_pred e
Confidence 3
No 210
>smart00409 IG Immunoglobulin.
Probab=99.10 E-value=2.6e-09 Score=65.43 Aligned_cols=83 Identities=34% Similarity=0.601 Sum_probs=59.3
Q ss_pred eeeeecCCCceEEEEEEeecCCCeEEEeeC-CEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCce
Q psy14532 10 IQQTLQPGPPVSLKCIATGNPTPHISWKLD-GYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRG 88 (258)
Q Consensus 10 ~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G 88 (258)
..+.+.+|+++.|.|.+.+.+...+.|+++ +..+... .+.... ......+|.|.++ +..|+|
T Consensus 2 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~---~~~~~~-------------~~~~~~~l~i~~~-~~~d~G 64 (86)
T smart00409 2 PSVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAES---GRFSVS-------------RSGSNSTLTISNV-TPEDSG 64 (86)
T ss_pred CcEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCC---CcEEEE-------------EcCCeeEEEEEee-ccccCe
Confidence 346678999999999998877789999998 6665411 111111 0001357999999 999999
Q ss_pred EEEEEEEeCCcceeeceEEEEE
Q psy14532 89 VYWCTATNKQGRSSSQNVHISV 110 (258)
Q Consensus 89 ~Y~C~~~~~~~~~~~~~~~l~v 110 (258)
.|.|.+.+..+... ..+.|.|
T Consensus 65 ~Y~C~v~~~~~~~~-~~~~l~V 85 (86)
T smart00409 65 TYTCAATNSSGSAS-STTTLTV 85 (86)
T ss_pred EEEEEEEcCCCeEE-EEEEEEE
Confidence 99999997776655 3366655
No 211
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=99.10 E-value=2.6e-09 Score=65.43 Aligned_cols=83 Identities=34% Similarity=0.601 Sum_probs=59.3
Q ss_pred eeeeecCCCceEEEEEEeecCCCeEEEeeC-CEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCce
Q psy14532 10 IQQTLQPGPPVSLKCIATGNPTPHISWKLD-GYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRG 88 (258)
Q Consensus 10 ~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G 88 (258)
..+.+.+|+++.|.|.+.+.+...+.|+++ +..+... .+.... ......+|.|.++ +..|+|
T Consensus 2 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~---~~~~~~-------------~~~~~~~l~i~~~-~~~d~G 64 (86)
T smart00410 2 PSVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAES---GRFSVS-------------RSGSNSTLTISNV-TPEDSG 64 (86)
T ss_pred CcEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCC---CcEEEE-------------EcCCeeEEEEEee-ccccCe
Confidence 346678999999999998877789999998 6665411 111111 0001357999999 999999
Q ss_pred EEEEEEEeCCcceeeceEEEEE
Q psy14532 89 VYWCTATNKQGRSSSQNVHISV 110 (258)
Q Consensus 89 ~Y~C~~~~~~~~~~~~~~~l~v 110 (258)
.|.|.+.+..+... ..+.|.|
T Consensus 65 ~Y~C~v~~~~~~~~-~~~~l~V 85 (86)
T smart00410 65 TYTCAATNSSGSAS-STTTLTV 85 (86)
T ss_pred EEEEEEEcCCCeEE-EEEEEEE
Confidence 99999997776655 3366655
No 212
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=99.09 E-value=8e-10 Score=68.55 Aligned_cols=87 Identities=18% Similarity=0.294 Sum_probs=58.6
Q ss_pred CCcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeec
Q psy14532 2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENV 81 (258)
Q Consensus 2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~ 81 (258)
+|.|...+. ..+.+|++|+|.|... .+...+.|+|+|....... . . .....+.+.|.++
T Consensus 2 kP~L~a~p~-~vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~~--~--~---------------~~~~~~~f~i~~v 60 (91)
T cd05751 2 KPSLWAEPS-SVVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVKK--P--P---------------EPQNKAKFFIPSM 60 (91)
T ss_pred CCEEEecCC-CccCCCCcEEEEEecC-CCCCEEEEEECCCCccccc--c--C---------------CCceeEEEEccCC
Confidence 466766664 5688999999999875 4567899999876433210 0 0 0012457899999
Q ss_pred ccCCCceEEEEEEEeCCc--ceeeceEEEEE
Q psy14532 82 QKDHDRGVYWCTATNKQG--RSSSQNVHISV 110 (258)
Q Consensus 82 ~~~~d~G~Y~C~~~~~~~--~~~~~~~~l~v 110 (258)
+.+|+|.|+|.+.+... ...+..+.|.|
T Consensus 61 -~~~~~G~Y~C~~~~~~~~~S~~Sd~lel~V 90 (91)
T cd05751 61 -KREHAGRYRCYYRSGVALWSEPSDPLELVV 90 (91)
T ss_pred -ChhHCEEEEEEEECCCCccCCCCCcEEEEe
Confidence 99999999999987631 12234455544
No 213
>KOG3515|consensus
Probab=99.09 E-value=1.7e-09 Score=88.99 Aligned_cols=226 Identities=22% Similarity=0.343 Sum_probs=133.9
Q ss_pred eeeeecCCCceEEEEEEe--ecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCc
Q psy14532 10 IQQTLQPGPPVSLKCIAT--GNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDR 87 (258)
Q Consensus 10 ~~~~~~~g~~v~l~C~~~--~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~ 87 (258)
.......+..+.+.|... +.|.+++.|..+......... ......... .........-+.+... +.++.
T Consensus 105 ~e~~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~-~~~~~~~~a-------~gss~t~~s~l~~~v~-Rka~~ 175 (741)
T KOG3515|consen 105 GEIFQVDKGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVN-QRGRVGAGA-------LGSSYTEPSLLKQTVS-RKADN 175 (741)
T ss_pred cchhhhcCCeEEEEEeecCCCCCCcceeeeeccEEeecccC-Ccccccccc-------cCceeccccceeeEEE-EecCC
Confidence 344567888999999654 357779999987654332210 000000000 0001122345677777 89999
Q ss_pred eEEEEEEEeCC--cceeeceEEEEEecCC--e-ecc-CCCcceecCCcEEEEeeeC-cccCceEEEEeCCcccCCCcceE
Q psy14532 88 GVYWCTATNKQ--GRSSSQNVHISVTGAP--F-VRP-MGNVSAIAGEPLYLGCPVA-GYPIESITWQKGVQQLPLNRRQK 160 (258)
Q Consensus 88 G~Y~C~~~~~~--~~~~~~~~~l~v~~~~--~-~~~-~~~~~~~~g~~~~l~C~~~-~~~~~~i~W~~~~~~~~~~~~~~ 160 (258)
|.|+|.+.+.. +....+...+.+..+. . +.. .....+.+|+.+.|.|.+. +.|.+.+.|+++...........
T Consensus 176 g~~tC~A~nr~s~~l~~~~~~~i~v~~~~~~~~~~~~~~~qsF~~g~~inlvc~~~gg~P~~~~~w~~~s~~~~~~sl~~ 255 (741)
T KOG3515|consen 176 GNYTCPANNRNSPGLSFAKQLTIIVEAPCKGIGITGAQEQQSFTEGQTINLVCNAQGGNPSQQQTWYKDSRPQSESSLLS 255 (741)
T ss_pred ceeEcccccccCccccccceeEeecccccccceecchhhcCcccccceEEEEehhhcCCcchhhhhccccccchhhhccc
Confidence 99999999853 2222133344443332 1 111 2235678899999999774 47889999999877655431111
Q ss_pred EecCC-----eEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEeecCCc-cccCCCCCccCCCCeeeEEEEeccCCCC
Q psy14532 161 VFPNG-----TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPK-IAPFEFQPDLHSGDRAGVQCLVTKGDPP 234 (258)
Q Consensus 161 ~~~~~-----~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p~-~~~~~~~~~~~~g~~~~l~C~~~~~~p~ 234 (258)
...++ ++.+..- +.++.-...|++.|. ......+.+..+|. ..+.+....+..|+...+.|....++|.
T Consensus 256 ~~~sg~~v~~~~~~~~~-r~~~~~~~kc~a~n~----~~~~~~tav~~~~~~~~Ist~~~~ls~g~s~r~~c~~sss~p~ 330 (741)
T KOG3515|consen 256 QEPSGDTVSSTLVLRVG-RQDLQAQLKCKASNL----LAASQITAVQVKPTAVPISTSDSGLSSGRSARSSCVSSSSKPP 330 (741)
T ss_pred CCCCCCccccccccccc-ccchhhhhhccccCc----cccceeeecccccccccccCcccccccccccccceeccCCCCc
Confidence 11111 2333322 325556788999981 22334445555443 3333444458889999999998888999
Q ss_pred ceeEEEECCEecccc
Q psy14532 235 LTISWLKNGLPILSA 249 (258)
Q Consensus 235 ~~~~W~~~g~~l~~~ 249 (258)
..+.|+++.......
T Consensus 331 ~~i~w~~~~~~~~~~ 345 (741)
T KOG3515|consen 331 AHIAWYKDTKMPKGS 345 (741)
T ss_pred cceeeeccCcccccc
Confidence 999999966655443
No 214
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=99.09 E-value=7.4e-10 Score=69.16 Aligned_cols=70 Identities=21% Similarity=0.353 Sum_probs=51.8
Q ss_pred CCCcceecCCcEEEEeeeCcccCceEEEEeC--------CcccCCCcceEEe----cCCeEEEEecccCCCCcEEEEEEE
Q psy14532 119 MGNVSAIAGEPLYLGCPVAGYPIESITWQKG--------VQQLPLNRRQKVF----PNGTLLIENVQKDHDRGVYWCTAT 186 (258)
Q Consensus 119 ~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~--------~~~~~~~~~~~~~----~~~~l~i~~~~~~~~~g~y~C~~~ 186 (258)
...+.+.+|+++.|.|.+.+.|.+.+.|++. +.......++... ...+|.|.++.. +|+|.|.|.+.
T Consensus 4 ~~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~-~DsG~Y~C~~~ 82 (95)
T cd07701 4 TQNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSL-SDEGQYTCSLF 82 (95)
T ss_pred cceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCc-ccCEEEEEEeE
Confidence 3457788999999999999989999999852 2211122333321 234799999997 99999999999
Q ss_pred eCC
Q psy14532 187 NKQ 189 (258)
Q Consensus 187 ~~~ 189 (258)
...
T Consensus 83 t~~ 85 (95)
T cd07701 83 TMP 85 (95)
T ss_pred eec
Confidence 753
No 215
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=99.09 E-value=3e-10 Score=68.89 Aligned_cols=72 Identities=32% Similarity=0.584 Sum_probs=55.1
Q ss_pred cceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcceEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEe
Q psy14532 122 VSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISV 201 (258)
Q Consensus 122 ~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v 201 (258)
..+..|+.+.|.|.+.+.|...+.|++++..+... ...+.+.++.. +|.|.|+|.+.+..+...+..+.|.|
T Consensus 9 ~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~-------~~~~~~~~~~~-~~~g~y~C~~~~~~~~~~s~~~~v~V 80 (80)
T PF13895_consen 9 QSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINSS-------QNGLFIPNVSP-EDSGNYTCRASNGSGSNTSTSVNVTV 80 (80)
T ss_dssp SEEETTSEEEEEEEEESSSSSEEEEEETTEEEEEE-------SSEEEESSEEG-GGTEEEEEEEEETTEEEEEEEEEEEE
T ss_pred eEEeCCCcEEEEEEEEcccceeeeeeeeeeeeeee-------eeeeeeeeecc-ccCEEEEEEEEeCCCCeEeeeEEeeC
Confidence 56889999999999998888899999987665422 12266677776 99999999999966545556666554
No 216
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=99.09 E-value=7e-10 Score=72.20 Aligned_cols=105 Identities=17% Similarity=0.235 Sum_probs=63.5
Q ss_pred ceeeceeeeecCCCceEEEEEEe-ecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeC-----CcEEE
Q psy14532 5 LIYKFIQQTLQPGPPVSLKCIAT-GNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPN-----GTLLI 78 (258)
Q Consensus 5 ~~~~~~~~~~~~g~~v~l~C~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~l~i 78 (258)
+...+..+.+.+|++|.|.|... ......+.|++....-....................+..+..+..+ .+|.|
T Consensus 4 vt~~~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i 83 (114)
T PF07686_consen 4 VTQPPSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTI 83 (114)
T ss_dssp EEEEESEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEE
T ss_pred EEEeCCeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEE
Confidence 44457888999999999999988 4455689999842100000000000001112223333444444433 35999
Q ss_pred eecccCCCceEEEEEEEeCCcceeeceEEEEE
Q psy14532 79 ENVQKDHDRGVYWCTATNKQGRSSSQNVHISV 110 (258)
Q Consensus 79 ~~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v 110 (258)
.++ +.+|+|.|.|.+...........+.|.|
T Consensus 84 ~~l-~~~DsG~Y~C~v~~~~~~~~~~~~~L~V 114 (114)
T PF07686_consen 84 KNL-QPSDSGTYFCQVSTSNEQSFGNGTKLTV 114 (114)
T ss_dssp SSE-SGGGEEEEEEEEEESSEEEEEEEEEEEE
T ss_pred CCC-CcCcCEEEEEEEEECCCCEECCcEEEEC
Confidence 999 9999999999999874444435555554
No 217
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=99.09 E-value=3.5e-10 Score=67.81 Aligned_cols=61 Identities=26% Similarity=0.495 Sum_probs=46.3
Q ss_pred EEEEeeeCc-ccCceEEEEeCCcccCCCc----ceEEe---cCCeEEEEecccCCCCcEEEEEEEeCCCC
Q psy14532 130 LYLGCPVAG-YPIESITWQKGVQQLPLNR----RQKVF---PNGTLLIENVQKDHDRGVYWCTATNKQGR 191 (258)
Q Consensus 130 ~~l~C~~~~-~~~~~i~W~~~~~~~~~~~----~~~~~---~~~~l~i~~~~~~~~~g~y~C~~~~~~~~ 191 (258)
+.|.|.+.+ .|.+.+.|++++..+.... +.... ..+.|.|.++.. +|+|.|+|.+.|..+.
T Consensus 1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~-~DsG~Y~C~a~N~~g~ 69 (76)
T cd05895 1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASL-ADNGEYKCMVSSKLGN 69 (76)
T ss_pred CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCc-ccCEEEEEEEEeCCCc
Confidence 479999864 6778999999988775332 11221 235699999997 9999999999999874
No 218
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=99.07 E-value=1.9e-09 Score=64.10 Aligned_cols=62 Identities=18% Similarity=0.262 Sum_probs=45.9
Q ss_pred cEEEEeeeC-cccCceEEEEeCCcccCCCcc-----eEEecCCeEEEEecccCCCCcEEEEEEEeCCCC
Q psy14532 129 PLYLGCPVA-GYPIESITWQKGVQQLPLNRR-----QKVFPNGTLLIENVQKDHDRGVYWCTATNKQGR 191 (258)
Q Consensus 129 ~~~l~C~~~-~~~~~~i~W~~~~~~~~~~~~-----~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~ 191 (258)
.+.|.|... +.|++.|.||+++..+..... ......+.|.+..... +|++.|+|+|.|..+.
T Consensus 1 ~~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~~~~~~~~t~~s~L~~~~~~~-Ddg~~~~C~A~n~a~~ 68 (80)
T cd05885 1 EVELTCLSPRSKPAATLRWYRDRKELKGVISQQENGKTVSVSNTIRFPVDRK-DDGAILSCEASHPALV 68 (80)
T ss_pred CEEEEEeCCCccCCCeEEEEECCEECCCCcccccCCceEEEEEEEEEEeeec-cCCcEEEEEEEChhhC
Confidence 368999985 589999999999998854321 1112234577777765 9999999999998864
No 219
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=99.07 E-value=5.3e-10 Score=64.62 Aligned_cols=58 Identities=36% Similarity=0.638 Sum_probs=45.4
Q ss_pred CCcEEEEeee-CcccCceEEEEeCCcccCCCcceEEecCC-e----EEEEecccCCCCcEEEEEE
Q psy14532 127 GEPLYLGCPV-AGYPIESITWQKGVQQLPLNRRQKVFPNG-T----LLIENVQKDHDRGVYWCTA 185 (258)
Q Consensus 127 g~~~~l~C~~-~~~~~~~i~W~~~~~~~~~~~~~~~~~~~-~----l~i~~~~~~~~~g~y~C~~ 185 (258)
|+++.|.|.+ .+.+...+.|++++............... . |.|.++.. +|+|.|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~-~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTP-EDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTG-GGTEEEEEEE
T ss_pred CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEeecccceeeeEEEEccCCH-HHCEEEEEEC
Confidence 7899999999 66678899999998877655443332222 2 99999998 9999999986
No 220
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=99.06 E-value=4.2e-10 Score=65.03 Aligned_cols=63 Identities=29% Similarity=0.602 Sum_probs=42.5
Q ss_pred CCceEEEEEE-eecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEEEEE
Q psy14532 17 GPPVSLKCIA-TGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTA 94 (258)
Q Consensus 17 g~~v~l~C~~-~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~~ 94 (258)
|++++|.|.+ .+.+...+.|++++............... .. ....|.|.++ +.+|+|.|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~------------~~--~~~~L~i~~v-~~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRSTNS------------VS--STSRLTISNV-TPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEETT------------TE--EEEEEEESSC-TGGGTEEEEEEE
T ss_pred CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEeeccc------------ce--eeeEEEEccC-CHHHCEEEEEEC
Confidence 7899999999 55677799999987655433110000000 00 0003999999 999999999986
No 221
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=99.06 E-value=1.3e-09 Score=69.93 Aligned_cols=90 Identities=22% Similarity=0.299 Sum_probs=55.9
Q ss_pred CCCceEEEEEEeecC----------CCeEEEeeC--CEeCcCCccccceecccceeeccccccceee------eeCCcEE
Q psy14532 16 PGPPVSLKCIATGNP----------TPHISWKLD--GYPLAGDRHENKNRIGEARVQQLPLNRRQKV------FPNGTLL 77 (258)
Q Consensus 16 ~g~~v~l~C~~~~~~----------~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~l~ 77 (258)
.|++|+|.|.....+ ...+.|+|. ++...... . ..........+.+|..+ ..+.+|.
T Consensus 1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~----~-~~~~~~~~~~f~gR~~~~~~~~~~~~asL~ 75 (110)
T cd05878 1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLV----A-QDGVVKVGQEYQGRVSLPNYPENRGDASLE 75 (110)
T ss_pred CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEE----E-ECCEEEecccccCeEEeccCCCCCCcEEEE
Confidence 389999999986532 357999985 22111000 0 00000112233334333 2456799
Q ss_pred EeecccCCCceEEEEEEEeCCcceeeceEEEEEec
Q psy14532 78 IENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTG 112 (258)
Q Consensus 78 i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~ 112 (258)
|.++ +.+|+|.|+|.+........ ..+.|.|..
T Consensus 76 I~~l-~~sD~G~Y~C~v~~~~~~~~-~~v~l~V~g 108 (110)
T cd05878 76 ISRL-RSSDSGVYRCEVMHGIEDEQ-DTVPLEVTG 108 (110)
T ss_pred ECCC-ChhhCEEEEEEEEeCCCcce-EEEEEEEEE
Confidence 9999 99999999999998665555 777777753
No 222
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=99.06 E-value=1.4e-09 Score=67.51 Aligned_cols=86 Identities=14% Similarity=0.245 Sum_probs=58.9
Q ss_pred CeeccCCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcceEEecCCeEEEEecccCCCCcEEEEEEEeCC-C-C
Q psy14532 114 PFVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQ-G-R 191 (258)
Q Consensus 114 ~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~-~-~ 191 (258)
|.+...+...+..|++|+|.|... .+...+.|+++|..............+.+.|.+++. +|+|.|+|.+.+.. . +
T Consensus 3 P~L~a~p~~vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~~~~~~~~~~~f~i~~v~~-~~~G~Y~C~~~~~~~~~S 80 (91)
T cd05751 3 PSLWAEPSSVVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVKKPPEPQNKAKFFIPSMKR-EHAGRYRCYYRSGVALWS 80 (91)
T ss_pred CEEEecCCCccCCCCcEEEEEecC-CCCCEEEEEECCCCccccccCCCceeEEEEccCCCh-hHCEEEEEEEECCCCccC
Confidence 444444556788999999999876 456689999988764432111112345689999998 99999999998863 1 2
Q ss_pred CccceEEEEe
Q psy14532 192 SSSQNVHISV 201 (258)
Q Consensus 192 ~~~~~~~l~v 201 (258)
..+..+.|.|
T Consensus 81 ~~Sd~lel~V 90 (91)
T cd05751 81 EPSDPLELVV 90 (91)
T ss_pred CCCCcEEEEe
Confidence 3455555554
No 223
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=99.05 E-value=2.9e-09 Score=64.25 Aligned_cols=80 Identities=24% Similarity=0.409 Sum_probs=56.3
Q ss_pred eeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceE
Q psy14532 10 IQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGV 89 (258)
Q Consensus 10 ~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~ 89 (258)
....+.+|+++.|.|...+. ...+.|++++..+... .++.. ...-|.|.++ +..|+|.
T Consensus 4 ~~~tv~~g~~v~L~C~~~s~-~A~v~W~~ng~~l~~~---~r~~~-----------------~~~GLlI~~~-~~~dsG~ 61 (85)
T cd05872 4 KNRTVAPGADVVLPCQLRSN-LASPVWLFNGTPLNAQ---FSYRV-----------------GTDGLLILVT-SPEHSGT 61 (85)
T ss_pred eEEEEecCCCEEEECCCCCC-CccEEEEECCcccCCC---cceEE-----------------eCCCCEEEEC-CHhhCEE
Confidence 45778999999999998764 6699999999877532 22211 1334789999 9999999
Q ss_pred EEEEEEeCCcceeeceEEEEEe
Q psy14532 90 YWCTATNKQGRSSSQNVHISVT 111 (258)
Q Consensus 90 Y~C~~~~~~~~~~~~~~~l~v~ 111 (258)
|.|.+.-..-......+.|.|.
T Consensus 62 Y~C~s~E~gf~~~~~~y~l~v~ 83 (85)
T cd05872 62 YRCYSEEEGFQQLVASYSLNVV 83 (85)
T ss_pred EEEEEecCCCeEEEEEEEEEEe
Confidence 9999874432222255555543
No 224
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=99.04 E-value=3.7e-09 Score=67.76 Aligned_cols=93 Identities=18% Similarity=0.252 Sum_probs=55.0
Q ss_pred CCCceEEEEEEeecC------CCeEEEeeCCEeCcCCccccceecccceeeccccccceeee----eCCcEEEeecccCC
Q psy14532 16 PGPPVSLKCIATGNP------TPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVF----PNGTLLIENVQKDH 85 (258)
Q Consensus 16 ~g~~v~l~C~~~~~~------~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~i~~~~~~~ 85 (258)
.|++|+|.|.....+ ...|.|+|....-.... ...+..+........+..|..+. .+.+|.|.++ +.+
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~-~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v-~~~ 78 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEE-DVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDL-RLE 78 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeE-EEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccC-ChH
Confidence 489999999876542 34799998531100000 00000001111111222333322 2467999999 999
Q ss_pred CceEEEEEEEeCCcceeeceEEEEEe
Q psy14532 86 DRGVYWCTATNKQGRSSSQNVHISVT 111 (258)
Q Consensus 86 d~G~Y~C~~~~~~~~~~~~~~~l~v~ 111 (258)
|+|.|+|.+.+..+... ..+.|.|.
T Consensus 79 DsG~Y~C~v~~~~~~~~-~~~~l~v~ 103 (106)
T cd05877 79 DYGRYRCEVIDGLEDES-VVVALRLR 103 (106)
T ss_pred HCEEEEEEEEecccceE-EEEEEEEE
Confidence 99999999988766555 77777765
No 225
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=99.04 E-value=1.3e-09 Score=70.37 Aligned_cols=87 Identities=16% Similarity=0.141 Sum_probs=54.1
Q ss_pred eeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeee-----eCCcEEEee
Q psy14532 6 IYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVF-----PNGTLLIEN 80 (258)
Q Consensus 6 ~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~i~~ 80 (258)
...+..+.+.+|++|+|.|.+.+.+...+.|+|....-... ........ .. .....|..+. ...+|.|.+
T Consensus 2 ~q~~~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~---~l~~~~~~-~~-~~~~~r~~~~~~~~~~~~~L~I~~ 76 (109)
T cd04983 2 TQSPQSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQ---FLIYISSN-GE-EKEKGRFSATLDKSRKSSSLHISA 76 (109)
T ss_pred eecCCceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeE---EEEEEecC-CC-cccCCcEEEEEcccCCEEEEEECC
Confidence 35567788999999999999987677799999853110000 00000000 00 0111122111 345799999
Q ss_pred cccCCCceEEEEEEEeCC
Q psy14532 81 VQKDHDRGVYWCTATNKQ 98 (258)
Q Consensus 81 ~~~~~d~G~Y~C~~~~~~ 98 (258)
+ +.+|+|.|.|.+.+..
T Consensus 77 ~-~~~DsG~Y~C~~~~~~ 93 (109)
T cd04983 77 A-QLSDSAVYFCALSESG 93 (109)
T ss_pred C-CHHHCEEEEEEEecCC
Confidence 9 9999999999998654
No 226
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=99.03 E-value=3.2e-09 Score=65.61 Aligned_cols=78 Identities=24% Similarity=0.372 Sum_probs=53.7
Q ss_pred cceecCCcEEEEeeeCcccCceEEEEeCCc--cc----CCCcceEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccc
Q psy14532 122 VSAIAGEPLYLGCPVAGYPIESITWQKGVQ--QL----PLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQ 195 (258)
Q Consensus 122 ~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~--~~----~~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~ 195 (258)
+...+|+.+.|.|.. +.|.+.+.|++... .. ....+... ..+.|.|.++.. +|+|.|+|.+.+........
T Consensus 6 ~~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~-~~~~L~I~~~~~-~DsG~Y~C~a~~~~~~~~~~ 82 (91)
T cd05871 6 VYGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERLIH-TERGLLLRSLQR-SDAGVYTCTAVEHSFSQTLA 82 (91)
T ss_pred EEEecCCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccEEE-ecCeEEEeeCCh-hHCEEEEEEEEccCCeEEEE
Confidence 456789999999996 47888999998432 21 11223332 446799999998 99999999998543223334
Q ss_pred eEEEEee
Q psy14532 196 NVHISVT 202 (258)
Q Consensus 196 ~~~l~v~ 202 (258)
.+.|.|.
T Consensus 83 ~~~l~v~ 89 (91)
T cd05871 83 KYTLHVI 89 (91)
T ss_pred EEEEEEe
Confidence 5666654
No 227
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=99.03 E-value=2.6e-09 Score=67.69 Aligned_cols=88 Identities=18% Similarity=0.281 Sum_probs=52.3
Q ss_pred CCceEEEEEEeec---CCCeEEEeeCCE--eCcCCccccceecccceeeccccccceee------eeCCcEEEeecccCC
Q psy14532 17 GPPVSLKCIATGN---PTPHISWKLDGY--PLAGDRHENKNRIGEARVQQLPLNRRQKV------FPNGTLLIENVQKDH 85 (258)
Q Consensus 17 g~~v~l~C~~~~~---~~~~v~W~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~l~i~~~~~~~ 85 (258)
|++|+|.|..... ....+.|+|... .+... ....... ......+..|..+ ..+.+|.|.++ +.+
T Consensus 1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~-~~~~~~~---~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v-~~~ 75 (100)
T cd05713 1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLY-RDGQDQY---GEQMPEYRGRTELLKDAIAEGSVALRIHNV-RAS 75 (100)
T ss_pred CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEE-cCCcccc---cccCccccceEEeecccccCCcEEEEEEcC-Chh
Confidence 7899999998632 223789998542 11111 0000000 0011112223222 13467999999 999
Q ss_pred CceEEEEEEEeCCcceeeceEEEEE
Q psy14532 86 DRGVYWCTATNKQGRSSSQNVHISV 110 (258)
Q Consensus 86 d~G~Y~C~~~~~~~~~~~~~~~l~v 110 (258)
|+|.|+|.+.+..+... ..+.|+|
T Consensus 76 D~G~Y~C~v~~~~~~~~-~~i~l~v 99 (100)
T cd05713 76 DEGLYTCFFQSDGFYEE-ATVELKV 99 (100)
T ss_pred hCEEEEEEEecCCcEEE-EEEEEEE
Confidence 99999999998776644 7777766
No 228
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=99.03 E-value=4.4e-09 Score=68.50 Aligned_cols=92 Identities=16% Similarity=0.250 Sum_probs=53.1
Q ss_pred eceeeeecCCCceEEEEEEeecC----CCeEEEeeCCEeCcCCccccceecccce-eeccccccceeee-----eCCcEE
Q psy14532 8 KFIQQTLQPGPPVSLKCIATGNP----TPHISWKLDGYPLAGDRHENKNRIGEAR-VQQLPLNRRQKVF-----PNGTLL 77 (258)
Q Consensus 8 ~~~~~~~~~g~~v~l~C~~~~~~----~~~v~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-----~~~~l~ 77 (258)
.|..+.+.+|++|+|.|...... ...+.|++....-........+..+... .....+..|..+. .+.+|+
T Consensus 4 ~p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~ 83 (116)
T cd05715 4 TPREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIV 83 (116)
T ss_pred cCCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEE
Confidence 46677889999999999886432 2469998742100000000000000000 0112233332222 246799
Q ss_pred EeecccCCCceEEEEEEEeCCcc
Q psy14532 78 IENVQKDHDRGVYWCTATNKQGR 100 (258)
Q Consensus 78 i~~~~~~~d~G~Y~C~~~~~~~~ 100 (258)
|.++ +.+|+|.|.|.+.+....
T Consensus 84 I~~v-~~~D~G~Y~C~v~~~~~~ 105 (116)
T cd05715 84 IHNL-QFTDNGTYTCDVKNPPDI 105 (116)
T ss_pred EeeC-CcccCEEEEEEEEeCCCC
Confidence 9999 999999999999987654
No 229
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=99.02 E-value=1.4e-09 Score=69.75 Aligned_cols=94 Identities=22% Similarity=0.263 Sum_probs=55.5
Q ss_pred CCCceEEEEEEeecC------CCeEEEeeCCEeCcCCccccceecccceeecccccccee----eeeCCcEEEeecccCC
Q psy14532 16 PGPPVSLKCIATGNP------TPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQK----VFPNGTLLIENVQKDH 85 (258)
Q Consensus 16 ~g~~v~l~C~~~~~~------~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~i~~~~~~~ 85 (258)
.|++|+|.|.....+ ...+.|+|....-..... .....+........+..+.. ...+.+|.|.++ +.+
T Consensus 1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~-v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v-~~s 78 (106)
T cd05714 1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVD-VLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDL-RLE 78 (106)
T ss_pred CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEE-EEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCC-CHH
Confidence 489999999987542 458999986310000000 00000100011112222222 124678999999 999
Q ss_pred CceEEEEEEEeCCcceeeceEEEEEec
Q psy14532 86 DRGVYWCTATNKQGRSSSQNVHISVTG 112 (258)
Q Consensus 86 d~G~Y~C~~~~~~~~~~~~~~~l~v~~ 112 (258)
|+|.|+|.+.+..+... ..+.|.|..
T Consensus 79 D~G~Y~C~v~~~~~~~~-~~v~L~V~~ 104 (106)
T cd05714 79 DSGRYRCEVIDGIEDEQ-DTVELEVRG 104 (106)
T ss_pred HCEEEEEEEEcCCCceE-EEEEEEEEE
Confidence 99999999998755444 777777753
No 230
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=99.02 E-value=5.4e-09 Score=64.59 Aligned_cols=89 Identities=15% Similarity=0.200 Sum_probs=64.1
Q ss_pred eeeeecCCCceEEEEEEeecCCCe-EEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCce
Q psy14532 10 IQQTLQPGPPVSLKCIATGNPTPH-ISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRG 88 (258)
Q Consensus 10 ~~~~~~~g~~v~l~C~~~~~~~~~-v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G 88 (258)
..+.|.+|+.+.|.|.+.+.|.+. +.|.+++..+...... .... .......-.+.|.+.++ +..|.|
T Consensus 11 ~~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~-~~~~----------~~~~~~rY~S~L~L~Rl-k~~E~G 78 (101)
T cd05860 11 TTIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDH-YVKS----------RNESNNRYVSELHLTRL-KGTEGG 78 (101)
T ss_pred ceEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccc-eeEE----------eccCceEEEEEEEEeec-ChhhCc
Confidence 346689999999999999999997 9999987655433211 1100 00011112357999999 999999
Q ss_pred EEEEEEEeCCcceeeceEEEEEe
Q psy14532 89 VYWCTATNKQGRSSSQNVHISVT 111 (258)
Q Consensus 89 ~Y~C~~~~~~~~~~~~~~~l~v~ 111 (258)
.|+|.+.|...... .++.|.|.
T Consensus 79 ~YTf~a~N~~~~~s-~tF~l~v~ 100 (101)
T cd05860 79 TYTFLVSNSDASAS-VTFNVYVN 100 (101)
T ss_pred EEEEEEECCCCeEE-EEEEEEEe
Confidence 99999999988776 77777764
No 231
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.00 E-value=2.2e-09 Score=66.30 Aligned_cols=68 Identities=19% Similarity=0.211 Sum_probs=50.9
Q ss_pred cceecCCcEEEEeee-Cc----ccCceEEEEeCCcccCCCcce-EE-ecCCeEEEEecccCCCCcEEEEEEEeCCC
Q psy14532 122 VSAIAGEPLYLGCPV-AG----YPIESITWQKGVQQLPLNRRQ-KV-FPNGTLLIENVQKDHDRGVYWCTATNKQG 190 (258)
Q Consensus 122 ~~~~~g~~~~l~C~~-~~----~~~~~i~W~~~~~~~~~~~~~-~~-~~~~~l~i~~~~~~~~~g~y~C~~~~~~~ 190 (258)
..+..|....|.|.- .+ .+.+.++|++++..+...... .. .....|.|.++.. +|+|.|+|++.+..+
T Consensus 5 ~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~~~~~~~~L~I~~v~~-~D~G~YtC~~~~~~~ 79 (95)
T cd05897 5 QILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFYSLKGSTYLHIIDVSL-NDSGYYTCKLQFTHE 79 (95)
T ss_pred eEeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceEecCCCCEEEEEEcCh-hhCEEEEEEEEEeeC
Confidence 345678899999972 33 356799999999887644322 22 2345799999998 999999999999764
No 232
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=99.00 E-value=2.8e-09 Score=65.90 Aligned_cols=81 Identities=17% Similarity=0.199 Sum_probs=50.9
Q ss_pred eeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceE
Q psy14532 10 IQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGV 89 (258)
Q Consensus 10 ~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~ 89 (258)
.++.+.+|++++|.|.+.+.....+.|++.+..+..... ... ..+.+.....+ .....+|.|.++ +.+|+|.
T Consensus 5 ~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~-~~~-~~d~Rf~~~~~-----~~~~~tL~I~~v-q~~D~G~ 76 (95)
T cd05881 5 EDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRD-VRP-LKDSRFQLVNF-----SSNELRVSLSNV-SLSDEGR 76 (95)
T ss_pred CceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecC-ccc-cCCcCEEEEeC-----CCCEEEEEECcC-CcccCEE
Confidence 567899999999999998876678899976532211100 000 01111100000 012336999999 9999999
Q ss_pred EEEEEEeCC
Q psy14532 90 YWCTATNKQ 98 (258)
Q Consensus 90 Y~C~~~~~~ 98 (258)
|.|.+....
T Consensus 77 Y~Cqv~t~p 85 (95)
T cd05881 77 YFCQLYTDP 85 (95)
T ss_pred EEEEEEccc
Confidence 999998644
No 233
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=98.99 E-value=6.6e-09 Score=65.32 Aligned_cols=92 Identities=21% Similarity=0.196 Sum_probs=52.9
Q ss_pred CCceEEEEEEeecC-CCeEEEeeCCEeCcCCccccceecccceeecccccccee----eeeCCcEEEeecccCCCceEEE
Q psy14532 17 GPPVSLKCIATGNP-TPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQK----VFPNGTLLIENVQKDHDRGVYW 91 (258)
Q Consensus 17 g~~v~l~C~~~~~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~i~~~~~~~d~G~Y~ 91 (258)
|++|+|.|...... ...|.|+|........ ...+...........+..+.. ...+.+|.|.++ +.+|+|.|+
T Consensus 1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~--i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv-~~~D~G~Y~ 77 (97)
T cd05846 1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPEN--IATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNV-TLEDEGCYK 77 (97)
T ss_pred CCcEEEEEEeCCCCeeEEEEEEEcCCCCceE--EEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCC-ceeeeEEEE
Confidence 78999999865432 2379999842110000 000000001111112222211 124578999999 999999999
Q ss_pred EEEEeCCcceeeceEEEEEe
Q psy14532 92 CTATNKQGRSSSQNVHISVT 111 (258)
Q Consensus 92 C~~~~~~~~~~~~~~~l~v~ 111 (258)
|.+...+.......+.|+|.
T Consensus 78 C~~~~~p~g~~~~~~~L~v~ 97 (97)
T cd05846 78 CIFNTFPDGSKSGTMCLTVY 97 (97)
T ss_pred EEEEeCCCCCeeeEEEEEEC
Confidence 99987655444477788763
No 234
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=98.99 E-value=3.9e-09 Score=71.87 Aligned_cols=98 Identities=24% Similarity=0.356 Sum_probs=65.1
Q ss_pred ceeeeecCCCceEEEEEEe-ecCCCeEEEeeCCEeCcCCccccceecccceeecccccccee----eeeCCcEEEeeccc
Q psy14532 9 FIQQTLQPGPPVSLKCIAT-GNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQK----VFPNGTLLIENVQK 83 (258)
Q Consensus 9 ~~~~~~~~g~~v~l~C~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~i~~~~~ 83 (258)
...+.|.+|++|+|.|... +...+.+.|+|..+.+......+ ..+ ..++.+|.. -..+.+|.|.++ +
T Consensus 22 ~~~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g-~~i------~~~Fk~Rve~mS~s~~~StItIknV-t 93 (189)
T PHA02987 22 FVKITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCG-PVI------VDKFKNKIEYLSKSFNESTILIKNV-S 93 (189)
T ss_pred eEEEEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCC-cEE------ChhhcCeEEEeccCCCcceEEEEeC-C
Confidence 3467789999999999974 55577899999644333222111 111 112222221 124567999999 9
Q ss_pred CCCceEEEEEEEeCCcc-eeeceEEEEEecCC
Q psy14532 84 DHDRGVYWCTATNKQGR-SSSQNVHISVTGAP 114 (258)
Q Consensus 84 ~~d~G~Y~C~~~~~~~~-~~~~~~~l~v~~~~ 114 (258)
.+|+|.|+|.+...+.. ..+....|.|....
T Consensus 94 ~sDeGcY~C~F~tfp~G~~~~gt~CLtVt~~~ 125 (189)
T PHA02987 94 LKDNGCYTCIFNTLLSKNNEKGVVCLNVTTDS 125 (189)
T ss_pred hhhCeEEEEEEEecCCCCCceeEEEEEEEchh
Confidence 99999999998875433 55588899998664
No 235
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.98 E-value=2.2e-09 Score=69.29 Aligned_cols=87 Identities=16% Similarity=0.202 Sum_probs=52.5
Q ss_pred eeeceeeeecCCCceEEEEEEeecCCCeEEEeeCC--EeCcCCccccceecccceee----ccccccceeeeeCCcEEEe
Q psy14532 6 IYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDG--YPLAGDRHENKNRIGEARVQ----QLPLNRRQKVFPNGTLLIE 79 (258)
Q Consensus 6 ~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~--~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~i~ 79 (258)
.+.|..+.+.+|++|+|.|...+ +...+.|||.. +....- ........... ..++..........+|.|.
T Consensus 2 ~Q~p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l---~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~ 77 (110)
T cd05899 2 TQSPRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLL---FYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIK 77 (110)
T ss_pred EECCCceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEE---EEEcCCCceEecCccCCceEEECcCCCccEEEEC
Confidence 45677888999999999999887 66789999853 111100 00000000000 0111100000124579999
Q ss_pred ecccCCCceEEEEEEEeC
Q psy14532 80 NVQKDHDRGVYWCTATNK 97 (258)
Q Consensus 80 ~~~~~~d~G~Y~C~~~~~ 97 (258)
++ +.+|+|.|.|.+...
T Consensus 78 ~~-~~~Dsg~Y~Ca~~~~ 94 (110)
T cd05899 78 SA-EPEDSAVYLCASSLG 94 (110)
T ss_pred CC-ChhhCEEEEEEeeCC
Confidence 99 999999999998764
No 236
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=98.98 E-value=1e-08 Score=62.75 Aligned_cols=79 Identities=37% Similarity=0.574 Sum_probs=58.2
Q ss_pred CcceecCCcEEEEeeeCcccCceEEEEeC-CcccCCCcceEEecC---CeEEEEecccCCCCcEEEEEEEeCCCCCccce
Q psy14532 121 NVSAIAGEPLYLGCPVAGYPIESITWQKG-VQQLPLNRRQKVFPN---GTLLIENVQKDHDRGVYWCTATNKQGRSSSQN 196 (258)
Q Consensus 121 ~~~~~~g~~~~l~C~~~~~~~~~i~W~~~-~~~~~~~~~~~~~~~---~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~ 196 (258)
...+..|+.+.|.|.+.+.+.+.+.|+++ +..+....+...... ..|.|.++.. .|+|.|.|.+.+..+... ..
T Consensus 3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~-~d~G~Y~C~v~~~~~~~~-~~ 80 (86)
T smart00410 3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTP-EDSGTYTCAATNSSGSAS-ST 80 (86)
T ss_pred cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeecc-ccCeEEEEEEEcCCCeEE-EE
Confidence 35577899999999998877889999998 666653444444333 5799999997 999999999997765333 22
Q ss_pred EEEEe
Q psy14532 197 VHISV 201 (258)
Q Consensus 197 ~~l~v 201 (258)
+.|.|
T Consensus 81 ~~l~V 85 (86)
T smart00410 81 TTLTV 85 (86)
T ss_pred EEEEE
Confidence 44443
No 237
>smart00409 IG Immunoglobulin.
Probab=98.98 E-value=1e-08 Score=62.75 Aligned_cols=79 Identities=37% Similarity=0.574 Sum_probs=58.2
Q ss_pred CcceecCCcEEEEeeeCcccCceEEEEeC-CcccCCCcceEEecC---CeEEEEecccCCCCcEEEEEEEeCCCCCccce
Q psy14532 121 NVSAIAGEPLYLGCPVAGYPIESITWQKG-VQQLPLNRRQKVFPN---GTLLIENVQKDHDRGVYWCTATNKQGRSSSQN 196 (258)
Q Consensus 121 ~~~~~~g~~~~l~C~~~~~~~~~i~W~~~-~~~~~~~~~~~~~~~---~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~ 196 (258)
...+..|+.+.|.|.+.+.+.+.+.|+++ +..+....+...... ..|.|.++.. .|+|.|.|.+.+..+... ..
T Consensus 3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~-~d~G~Y~C~v~~~~~~~~-~~ 80 (86)
T smart00409 3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTP-EDSGTYTCAATNSSGSAS-ST 80 (86)
T ss_pred cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeecc-ccCeEEEEEEEcCCCeEE-EE
Confidence 35577899999999998877889999998 666653444444333 5799999997 999999999997765333 22
Q ss_pred EEEEe
Q psy14532 197 VHISV 201 (258)
Q Consensus 197 ~~l~v 201 (258)
+.|.|
T Consensus 81 ~~l~V 85 (86)
T smart00409 81 TTLTV 85 (86)
T ss_pred EEEEE
Confidence 44443
No 238
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=98.97 E-value=5e-09 Score=66.14 Aligned_cols=89 Identities=17% Similarity=0.200 Sum_probs=50.7
Q ss_pred CceEEEEEEeecC---CCeEEEeeCCEeCcCCccccceecccceeeccccccceeee----eCCcEEEeecccCCCceEE
Q psy14532 18 PPVSLKCIATGNP---TPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVF----PNGTLLIENVQKDHDRGVY 90 (258)
Q Consensus 18 ~~v~l~C~~~~~~---~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~i~~~~~~~d~G~Y 90 (258)
++|+|.|...... ...|.|+|....-.. ....+...........+..|..+. .+.+|.|.++ +.+|+|.|
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~--~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v-~~~D~G~Y 77 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQ--NIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNL-RLEDEGNY 77 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeECCCCCE--EEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccC-CcccCEEE
Confidence 5799999987643 347999985421000 000000000000001122222222 3568999999 99999999
Q ss_pred EEEEEeC-CcceeeceEEEEE
Q psy14532 91 WCTATNK-QGRSSSQNVHISV 110 (258)
Q Consensus 91 ~C~~~~~-~~~~~~~~~~l~v 110 (258)
.|.+... .|... ..+.|.|
T Consensus 78 ~C~v~~~~~g~~~-~~~~l~V 97 (98)
T cd05718 78 ICEFATFPQGNRQ-KVTTLTV 97 (98)
T ss_pred EEEEEeCCCCcEE-EEEEEEe
Confidence 9999764 44444 7777766
No 239
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=98.96 E-value=1.1e-08 Score=64.02 Aligned_cols=39 Identities=21% Similarity=0.433 Sum_probs=31.7
Q ss_pred eCCcEEEeecccCCCceEEEEEEEeCCcceeeceEEEEEe
Q psy14532 72 PNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVT 111 (258)
Q Consensus 72 ~~~~l~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~ 111 (258)
.+++|.|.++ +.+|+|.|+|.+.+......+..+.|.|+
T Consensus 61 ~daSi~i~nl-~~~D~G~Y~C~v~t~P~g~~~~~~~L~V~ 99 (99)
T cd05886 61 EDGTISLSRL-ELEDEGVYICEFATFPTGNRESQLNLTVY 99 (99)
T ss_pred CcceEEEcCC-ccccCEEEEEEEEeCCCCCeEEEEEEEEC
Confidence 4689999999 99999999999999544334478888774
No 240
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.96 E-value=4.6e-09 Score=67.25 Aligned_cols=84 Identities=19% Similarity=0.251 Sum_probs=49.8
Q ss_pred eecCCCceEEEEEEeec-CCCeEEEeeCCEeCcCCccccceecccceeeccccccceeee-----eCCcEEEeecccCCC
Q psy14532 13 TLQPGPPVSLKCIATGN-PTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVF-----PNGTLLIENVQKDHD 86 (258)
Q Consensus 13 ~~~~g~~v~l~C~~~~~-~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~i~~~~~~~d 86 (258)
.+.+|++|+|.|.+... +...+.|+|....-... ........... ....+..+.... .+.+|.|.++ +.+|
T Consensus 2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~-~i~~~~~~~~~-~~~~~~~r~~~~~~~~~~~~sL~I~~v-~~~D 78 (105)
T cd00099 2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPE-LLIYISSNGSQ-YAGGVKGRFSGTRDSSKSSFTLTISSL-QPED 78 (105)
T ss_pred eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCE-EEEEEeCCCCc-cCccCCCcEEEEEeccCCEEEEEECCC-CHHH
Confidence 57899999999999875 66789999853210000 00000000000 011112222221 2347999999 9999
Q ss_pred ceEEEEEEEeCCc
Q psy14532 87 RGVYWCTATNKQG 99 (258)
Q Consensus 87 ~G~Y~C~~~~~~~ 99 (258)
+|.|.|.+.+..+
T Consensus 79 ~G~Y~C~v~~~~~ 91 (105)
T cd00099 79 SAVYYCAVSLSGG 91 (105)
T ss_pred CEEEEEEEecCCC
Confidence 9999999987664
No 241
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=98.96 E-value=1.2e-08 Score=60.67 Aligned_cols=68 Identities=21% Similarity=0.348 Sum_probs=48.5
Q ss_pred ceEEEEEEee-cCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEEEEEEeC
Q psy14532 19 PVSLKCIATG-NPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNK 97 (258)
Q Consensus 19 ~v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~~~~~ 97 (258)
.+.|+|...+ .|.+.++|||+++++..... .. .........++|.+... +.+|.+.|+|.+.|.
T Consensus 1 ~~~L~C~s~~skP~a~i~W~k~~~~l~~~~~-~~-------------~~~~~~t~~s~L~~~~~-~~Ddg~~~~C~A~n~ 65 (80)
T cd05885 1 EVELTCLSPRSKPAATLRWYRDRKELKGVIS-QQ-------------ENGKTVSVSNTIRFPVD-RKDDGAILSCEASHP 65 (80)
T ss_pred CEEEEEeCCCccCCCeEEEEECCEECCCCcc-cc-------------cCCceEEEEEEEEEEee-eccCCcEEEEEEECh
Confidence 3789999765 68889999999999864310 00 01111223456888888 899999999999998
Q ss_pred Ccce
Q psy14532 98 QGRS 101 (258)
Q Consensus 98 ~~~~ 101 (258)
.+..
T Consensus 66 a~~~ 69 (80)
T cd05885 66 ALVS 69 (80)
T ss_pred hhCC
Confidence 7643
No 242
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=98.94 E-value=1.1e-08 Score=61.68 Aligned_cols=65 Identities=23% Similarity=0.371 Sum_probs=52.2
Q ss_pred CcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcceEEecCCeEEEEecccCCCCcEEEEEEEeC
Q psy14532 121 NVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNK 188 (258)
Q Consensus 121 ~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~ 188 (258)
...+..|+.+.|.|...+. .+.+.|++++..+....+......+ |.|.+++. .|+|.|.|.+.-.
T Consensus 5 ~~tv~~g~~v~L~C~~~s~-~A~v~W~~ng~~l~~~~r~~~~~~G-LlI~~~~~-~dsG~Y~C~s~E~ 69 (85)
T cd05872 5 NRTVAPGADVVLPCQLRSN-LASPVWLFNGTPLNAQFSYRVGTDG-LLILVTSP-EHSGTYRCYSEEE 69 (85)
T ss_pred EEEEecCCCEEEECCCCCC-CccEEEEECCcccCCCcceEEeCCC-CEEEECCH-hhCEEEEEEEecC
Confidence 4567899999999998764 6699999999988766555554444 66888887 9999999998744
No 243
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=98.94 E-value=2.3e-09 Score=63.99 Aligned_cols=74 Identities=36% Similarity=0.555 Sum_probs=51.9
Q ss_pred CCcceeeceeeeecCCCceEEEEEEeecC-CCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEee
Q psy14532 2 HPQLIYKFIQQTLQPGPPVSLKCIATGNP-TPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIEN 80 (258)
Q Consensus 2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~ 80 (258)
||.|...+.......+. +.|.|.+.+.+ .+.++|+........ ........+++|.|.+
T Consensus 1 kP~I~~~~~~~~~~~~~-~~l~C~~~~~~~~~~~~W~~~~~~~~~-------------------~~~~~~~~~~~L~i~~ 60 (75)
T PF13927_consen 1 KPQISVPPPPVVTSGGS-VTLTCSAEGGPPPPSISWYDSNPSFNS-------------------NSRGSSSSNSTLTISN 60 (75)
T ss_dssp ESEEEEESTSEEETTEE-EEEEEEESSEESSEEEEEETEEEEEEE-------------------EEEEEEEEEEEEEESS
T ss_pred CCEEEEcCCCcEeecee-EEEEEEEccccCCeEEEEEecCCceee-------------------eeeeccceeeEEEEcc
Confidence 58888877777666666 99999998876 779999911000000 0011223456799999
Q ss_pred cccCCCceEEEEEEEe
Q psy14532 81 VQKDHDRGVYWCTATN 96 (258)
Q Consensus 81 ~~~~~d~G~Y~C~~~~ 96 (258)
+ ..+|.|.|+|.|.|
T Consensus 61 v-~~~~~g~y~C~a~N 75 (75)
T PF13927_consen 61 V-TRSDNGTYTCIASN 75 (75)
T ss_dssp C-CGGGTEEEEEEEEE
T ss_pred C-CHHhCcEEEEEEEC
Confidence 9 99999999999975
No 244
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=98.94 E-value=1.5e-08 Score=64.00 Aligned_cols=86 Identities=16% Similarity=0.271 Sum_probs=50.9
Q ss_pred CceEEEEEEeecC---CCeEEEeeCCE---e--CcCCccccceecccceeeccccccceeee-----eCCcEEEeecccC
Q psy14532 18 PPVSLKCIATGNP---TPHISWKLDGY---P--LAGDRHENKNRIGEARVQQLPLNRRQKVF-----PNGTLLIENVQKD 84 (258)
Q Consensus 18 ~~v~l~C~~~~~~---~~~v~W~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~i~~~~~~ 84 (258)
.+|+|.|...... ...|.|+|... + +... ....+... ...+.+|.... .+++|.|.++ +.
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~----~~~~~~~~--~~~~~~Rv~f~~~~~~~~~sL~I~nv-~~ 73 (100)
T cd05888 1 GDTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALL----HFKYGQTE--FHAYEGRVRFETPNPIADGALILRNA-VQ 73 (100)
T ss_pred CCEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEE----eccCCccc--CCCccCcEEEeCCCCCCceEEEEecC-cc
Confidence 3689999986543 34899998421 1 1100 00001000 11222232222 3668999999 99
Q ss_pred CCceEEEEEEEeCCcceeeceEEEEE
Q psy14532 85 HDRGVYWCTATNKQGRSSSQNVHISV 110 (258)
Q Consensus 85 ~d~G~Y~C~~~~~~~~~~~~~~~l~v 110 (258)
+|+|.|.|.+.+.........+.|.|
T Consensus 74 sD~GtY~C~v~~~p~g~~~~~~~L~V 99 (100)
T cd05888 74 ADEGKYKCRVITFPAGNFEAELVLTV 99 (100)
T ss_pred ccceEEEEEEEeCCCCCeeeEEEEEe
Confidence 99999999999854443347777776
No 245
>PHA03376 BARF1; Provisional
Probab=98.92 E-value=3.9e-08 Score=66.83 Aligned_cols=119 Identities=20% Similarity=0.271 Sum_probs=70.5
Q ss_pred CcceecCCcEEEEeeeCc---ccCceEEEEeCCc----cc-------------CCCcceEE---ecCCeEEEEecccCCC
Q psy14532 121 NVSAIAGEPLYLGCPVAG---YPIESITWQKGVQ----QL-------------PLNRRQKV---FPNGTLLIENVQKDHD 177 (258)
Q Consensus 121 ~~~~~~g~~~~l~C~~~~---~~~~~i~W~~~~~----~~-------------~~~~~~~~---~~~~~l~i~~~~~~~~ 177 (258)
.+....|+.+.|.|.... .....|.|+|.+. .+ ....+..+ ..+-+|.|.+++. +|
T Consensus 20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~l-SD 98 (221)
T PHA03376 20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANI-SH 98 (221)
T ss_pred chhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeee-cC
Confidence 456778999999998752 2455899999432 10 01111222 1223688899997 99
Q ss_pred CcEEEEEEEeCCCCCccceEEEEeecCCccccCCCCCccCCCCeeeEEEEeccCCCCceeEEEEC
Q psy14532 178 RGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISWLKN 242 (258)
Q Consensus 178 ~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~ 242 (258)
.|.|+|.+........ .--.|.+..+-.+.+.........-+...+.|.+ +++|.|.++|.-+
T Consensus 99 dGtY~C~fQkge~~~~-k~ehLt~V~~~~Lsv~a~~~dFp~~~~~~i~C~s-ggfP~P~~~Wle~ 161 (221)
T PHA03376 99 DGNYLCRMKLGETEVT-KQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTV-NAFPHPHVQWLMP 161 (221)
T ss_pred CceEEEEEEcCCCcee-eeeeeeeeecceEEEEeccccCCCCCeeEEEEec-CCcCCchheeccc
Confidence 9999999987653211 1111221111111111111112225678999995 9999999999864
No 246
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.92 E-value=1.2e-08 Score=60.84 Aligned_cols=73 Identities=16% Similarity=0.322 Sum_probs=49.9
Q ss_pred EEEEeeeCc-ccCceEEEEeCCcccCCCcceE-Ee-----cCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEee
Q psy14532 130 LYLGCPVAG-YPIESITWQKGVQQLPLNRRQK-VF-----PNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVT 202 (258)
Q Consensus 130 ~~l~C~~~~-~~~~~i~W~~~~~~~~~~~~~~-~~-----~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~ 202 (258)
+.|.|.+.| +|.+.|.|++++..+....... .. ..+.|.+.... ++|+..|+|+|.|..-........|+|.
T Consensus 2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~-eDdG~~~~C~a~~~~l~~~~~~~~L~V~ 80 (82)
T cd05883 2 IELNCTAMASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTK-EDDGVPVICLVDHPAVKDLQTQRYLEVQ 80 (82)
T ss_pred EEEEEEecCCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECch-hhCCCEEEEEEcCcccCCceeeEEEEEE
Confidence 689999866 7899999999998876542211 11 12246665444 4777799999999875445666667765
Q ss_pred c
Q psy14532 203 V 203 (258)
Q Consensus 203 ~ 203 (258)
+
T Consensus 81 y 81 (82)
T cd05883 81 Y 81 (82)
T ss_pred E
Confidence 4
No 247
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.91 E-value=2e-08 Score=64.35 Aligned_cols=88 Identities=17% Similarity=0.189 Sum_probs=51.8
Q ss_pred ceeeceeeeecCCCceEEEEEEeecC-CCeEEEeeCC--EeCcCCccccceecccceeeccccccceeeeeCCcEEEeec
Q psy14532 5 LIYKFIQQTLQPGPPVSLKCIATGNP-TPHISWKLDG--YPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENV 81 (258)
Q Consensus 5 ~~~~~~~~~~~~g~~v~l~C~~~~~~-~~~v~W~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~ 81 (258)
+.+.|..+.+.+|++|+|.|.+.+.. ...+.|||.. +....- .............++... .......|.|.++
T Consensus 3 v~Q~p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l---~~~~~~~~~~~~~r~~~~-~~~~~~~L~I~~~ 78 (106)
T cd04980 3 LTQSPATLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLL---IYGASTLASGTPSRFSGS-GSGTDFTLTISRV 78 (106)
T ss_pred EEECCCcEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEE---EECccccCCCCCCCEEEe-ccCCEEEEEECCC
Confidence 45677888999999999999987654 5679999842 111000 000000000000011110 0112346999999
Q ss_pred ccCCCceEEEEEEEeC
Q psy14532 82 QKDHDRGVYWCTATNK 97 (258)
Q Consensus 82 ~~~~d~G~Y~C~~~~~ 97 (258)
+.+|+|.|.|.+.+.
T Consensus 79 -~~~Dsg~Y~Ca~~~~ 93 (106)
T cd04980 79 -EPEDAAVYYCQQYGT 93 (106)
T ss_pred -ChHHCEEEEEEEeCC
Confidence 999999999998654
No 248
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=98.91 E-value=1.4e-08 Score=63.68 Aligned_cols=70 Identities=24% Similarity=0.374 Sum_probs=50.2
Q ss_pred CCCcceecCCcEEEEeeeCcccCceEEEEeCCccc--------CCCcceEEe----cCCeEEEEecccCCCCcEEEEEEE
Q psy14532 119 MGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQL--------PLNRRQKVF----PNGTLLIENVQKDHDRGVYWCTAT 186 (258)
Q Consensus 119 ~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~--------~~~~~~~~~----~~~~l~i~~~~~~~~~g~y~C~~~ 186 (258)
.....+.+|+++.|.|.+.+.+.+.+.|++.+..+ ....++.+. ....|.|.+++. +|+|.|+|.+.
T Consensus 4 ~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~-~DsG~Y~C~~~ 82 (95)
T cd05717 4 TQDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSL-SDEGRYTCSLY 82 (95)
T ss_pred CCcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCc-ccCEEEEEEEe
Confidence 34567889999999999988778899998522211 011233331 234689999998 99999999998
Q ss_pred eCC
Q psy14532 187 NKQ 189 (258)
Q Consensus 187 ~~~ 189 (258)
...
T Consensus 83 ~~~ 85 (95)
T cd05717 83 TMP 85 (95)
T ss_pred cCC
Confidence 764
No 249
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=98.90 E-value=1.3e-08 Score=62.32 Aligned_cols=74 Identities=28% Similarity=0.327 Sum_probs=50.7
Q ss_pred CCcEEEEeeeCccc--CceEEEEeCCcccCCC---c--ceE----EecCCeEEEEecccCCCCcEEEEEEEeCCCCCccc
Q psy14532 127 GEPLYLGCPVAGYP--IESITWQKGVQQLPLN---R--RQK----VFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQ 195 (258)
Q Consensus 127 g~~~~l~C~~~~~~--~~~i~W~~~~~~~~~~---~--~~~----~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~ 195 (258)
|+.+.|.|.+.+.+ ...+.|...+...... . +.. ....+.|.|.++.. .|+|.|+|.+.|..+ ....
T Consensus 1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~-~DsG~Y~C~a~n~~~-~~~~ 78 (86)
T cd05862 1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTL-SDLGRYTCTASSGQM-IAKN 78 (86)
T ss_pred CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCc-ccCEEEEEEEeecce-Eecc
Confidence 68899999997644 4588998866533111 1 000 11245799999997 999999999999876 3445
Q ss_pred eEEEEee
Q psy14532 196 NVHISVT 202 (258)
Q Consensus 196 ~~~l~v~ 202 (258)
...|.|+
T Consensus 79 ~t~~~V~ 85 (86)
T cd05862 79 STIVIVH 85 (86)
T ss_pred cEEEEEe
Confidence 5556554
No 250
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=98.90 E-value=1.7e-08 Score=62.56 Aligned_cols=90 Identities=23% Similarity=0.293 Sum_probs=52.3
Q ss_pred CceEEEEEEeec-CCCeEEEeeCC----EeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEEE
Q psy14532 18 PPVSLKCIATGN-PTPHISWKLDG----YPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWC 92 (258)
Q Consensus 18 ~~v~l~C~~~~~-~~~~v~W~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C 92 (258)
++|+|.|..... ...+|.|.|-. ..+..........+......+..+. .....+++|.|.++ +.+|+|.|+|
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~--~~~~~d~sl~i~nv-~~~D~G~Y~C 77 (96)
T cd05887 1 KNVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFK--NYSLLDATIMLENV-GFSDIGVYIC 77 (96)
T ss_pred CCEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEc--CCCCCccEEEEeCC-CccccEEEEE
Confidence 468999998642 34489998842 1111111001111111111111111 11234789999999 9999999999
Q ss_pred EEEeCCcceeeceEEEEE
Q psy14532 93 TATNKQGRSSSQNVHISV 110 (258)
Q Consensus 93 ~~~~~~~~~~~~~~~l~v 110 (258)
.+...+.........|.|
T Consensus 78 ~v~tfP~G~~~~~~~l~~ 95 (96)
T cd05887 78 KAVTFPLGNTQSSTTVTV 95 (96)
T ss_pred EEEeCCCCCeeEEEEEEE
Confidence 998766544447777776
No 251
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=98.90 E-value=8.8e-09 Score=65.68 Aligned_cols=90 Identities=20% Similarity=0.262 Sum_probs=55.7
Q ss_pred CCceEEEEEEeecC-------CCeEEEeeCC--EeCcCCcccccee-cccceeeccccccceeee------eCCcEEEee
Q psy14532 17 GPPVSLKCIATGNP-------TPHISWKLDG--YPLAGDRHENKNR-IGEARVQQLPLNRRQKVF------PNGTLLIEN 80 (258)
Q Consensus 17 g~~v~l~C~~~~~~-------~~~v~W~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~------~~~~l~i~~ 80 (258)
|++|+|.|...-.| .+.+.|.|.- +..... ..+. .+........+..|..+. .+.+|.|.+
T Consensus 2 ~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~---~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~n 78 (110)
T cd05902 2 SSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQR---PVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSR 78 (110)
T ss_pred CCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEE---EEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECC
Confidence 78999999965322 3689999841 111100 0000 111111234455555543 356899999
Q ss_pred cccCCCceEEEEEEEeCCcceeeceEEEEEe
Q psy14532 81 VQKDHDRGVYWCTATNKQGRSSSQNVHISVT 111 (258)
Q Consensus 81 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~ 111 (258)
+ +.+|+|.|+|.+........ ..+.|.|.
T Consensus 79 v-~~~D~G~Y~C~v~~g~~~~~-~~v~L~V~ 107 (110)
T cd05902 79 L-RYSDSGTYRCEVVLGINDEQ-DTVPLEVT 107 (110)
T ss_pred C-CHHHCEEEEEEEEECCcccE-EEEEEEEE
Confidence 9 99999999999998654444 77777775
No 252
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=98.90 E-value=1.2e-08 Score=63.52 Aligned_cols=76 Identities=16% Similarity=0.150 Sum_probs=50.9
Q ss_pred CCcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeec
Q psy14532 2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENV 81 (258)
Q Consensus 2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~ 81 (258)
+|.|...+ ...+.+|++|+|.|.... ....+.|+|+|............ .....+.+.|..+
T Consensus 1 kP~l~a~p-~~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~~~~~~----------------~~~~~a~f~I~~~ 62 (94)
T cd05711 1 KPFLSAHP-SPVVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVLHLYEKH----------------HGGFQASFPLGPV 62 (94)
T ss_pred CCEEEecC-CCccCCCCeEEEEEecCC-CCCEEEEEECCCCCCceeccccc----------------CCeEEEEEEecCC
Confidence 46676655 466889999999997764 45589999987643221000000 0011346889999
Q ss_pred ccCCCceEEEEEEEe
Q psy14532 82 QKDHDRGVYWCTATN 96 (258)
Q Consensus 82 ~~~~d~G~Y~C~~~~ 96 (258)
+.+|+|.|+|....
T Consensus 63 -~~~~~G~Y~C~~~~ 76 (94)
T cd05711 63 -TPAHAGTYRCYGSY 76 (94)
T ss_pred -CcccCEEEEEEEEC
Confidence 99999999999764
No 253
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.88 E-value=2.2e-08 Score=60.89 Aligned_cols=70 Identities=20% Similarity=0.336 Sum_probs=46.0
Q ss_pred EEEEeeeCc-ccCceEEEEeCCcccCCCcce-EEecC-------CeEEEEecccCCCCcEEEEEEEeCCCC-CccceEEE
Q psy14532 130 LYLGCPVAG-YPIESITWQKGVQQLPLNRRQ-KVFPN-------GTLLIENVQKDHDRGVYWCTATNKQGR-SSSQNVHI 199 (258)
Q Consensus 130 ~~l~C~~~~-~~~~~i~W~~~~~~~~~~~~~-~~~~~-------~~l~i~~~~~~~~~g~y~C~~~~~~~~-~~~~~~~l 199 (258)
+.|.|.+.| .|.+.++|++++..+...... ....+ +.|.+..... ++.|.|+|.|.|.... ....++.|
T Consensus 2 ~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~~~~~y~C~a~n~~l~~~~~~s~~l 80 (82)
T cd05759 2 YNLTCRARGAKPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDH-DTGRTFTCRARNEALPTGKETSVTL 80 (82)
T ss_pred EEEEEEEeCccCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCcee-cCCCEEEEEEcCccCCCCcEEEEEE
Confidence 689999987 688899999999876533211 11112 2456665554 7888999999997632 33445544
Q ss_pred E
Q psy14532 200 S 200 (258)
Q Consensus 200 ~ 200 (258)
+
T Consensus 81 ~ 81 (82)
T cd05759 81 D 81 (82)
T ss_pred c
Confidence 4
No 254
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.88 E-value=2.3e-08 Score=65.20 Aligned_cols=87 Identities=18% Similarity=0.233 Sum_probs=51.6
Q ss_pred eeceeeeecCCCceEEEEEEee--cCCCeEEEeeCC--EeCcCCccccceecccc-eeeccccccceeee-----eCCcE
Q psy14532 7 YKFIQQTLQPGPPVSLKCIATG--NPTPHISWKLDG--YPLAGDRHENKNRIGEA-RVQQLPLNRRQKVF-----PNGTL 76 (258)
Q Consensus 7 ~~~~~~~~~~g~~v~l~C~~~~--~~~~~v~W~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-----~~~~l 76 (258)
+.+..+.+.+|++|+|.|.+.+ .+...+.|||.. .....- ........ ......+..+.... ...+|
T Consensus 3 Q~p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l---~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L 79 (116)
T cd04982 3 QPQLSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERL---LYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTL 79 (116)
T ss_pred CcCCeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEE---EEEecCCCcEEeCcccCCCEEEEEECCCCEEEE
Confidence 4567788999999999999876 566789999852 111000 00000000 00000111122211 23469
Q ss_pred EEeecccCCCceEEEEEEEeC
Q psy14532 77 LIENVQKDHDRGVYWCTATNK 97 (258)
Q Consensus 77 ~i~~~~~~~d~G~Y~C~~~~~ 97 (258)
.|.++ +.+|+|.|.|.+...
T Consensus 80 ~I~~~-~~~Dsg~Y~C~~~~~ 99 (116)
T cd04982 80 TIQNL-EKEDSATYYCAYWES 99 (116)
T ss_pred EEEEC-CHHHCEEEEEEEecC
Confidence 99999 999999999998643
No 255
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=98.88 E-value=2.5e-08 Score=63.10 Aligned_cols=78 Identities=26% Similarity=0.414 Sum_probs=55.2
Q ss_pred CcceecCCcEEEEeeeCcccCceEEEEeCCccc-------------------CCCcceEEecCCeEEEEecccCCCCcEE
Q psy14532 121 NVSAIAGEPLYLGCPVAGYPIESITWQKGVQQL-------------------PLNRRQKVFPNGTLLIENVQKDHDRGVY 181 (258)
Q Consensus 121 ~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~-------------------~~~~~~~~~~~~~l~i~~~~~~~~~g~y 181 (258)
+..+.+|+.+.|.|.........+.|+|..... ....+..+..+++|.|.+++. +|+|.|
T Consensus 7 p~~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ngSL~I~~v~~-~D~G~Y 85 (105)
T cd05774 7 PPQVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNGSLLIQNVTQ-KDTGFY 85 (105)
T ss_pred CCcccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCCcEEEecCCc-ccCEEE
Confidence 345778999999997643344589999953211 123455667788999999997 999999
Q ss_pred EEEEEeCCCCCccceEEE
Q psy14532 182 WCTATNKQGRSSSQNVHI 199 (258)
Q Consensus 182 ~C~~~~~~~~~~~~~~~l 199 (258)
+|.+.+.........+.|
T Consensus 86 ~~~v~~~~~~~~~~~v~l 103 (105)
T cd05774 86 TLQTITTNFQVEQATVHL 103 (105)
T ss_pred EEEEEeCCccEEEEEEEE
Confidence 999998764333344443
No 256
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=98.86 E-value=2.6e-08 Score=63.70 Aligned_cols=91 Identities=19% Similarity=0.200 Sum_probs=56.1
Q ss_pred CCceEEEEEEeecC-----------CCeEEEeeCC-----EeCcCCccccceecccceeeccccccceeee------eCC
Q psy14532 17 GPPVSLKCIATGNP-----------TPHISWKLDG-----YPLAGDRHENKNRIGEARVQQLPLNRRQKVF------PNG 74 (258)
Q Consensus 17 g~~v~l~C~~~~~~-----------~~~v~W~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~ 74 (258)
|++++|.|.....| ...|.|++-. +..... .-....+........+.+|..+. .+.
T Consensus 2 ~g~v~LPC~f~~~p~~p~~~~~~~~~~rIkW~~~~~~~~g~~~~e~--~Vlv~~~g~~~~~~~y~gRv~l~~~~~~~g~a 79 (117)
T cd05901 2 SGSVVLPCRFSTLPTLPPSVITTSEFLRIKWTKIEVDKNGKDHKET--TVLVAQNGIIKIGQEYMGRVSVPSHPEDQGDA 79 (117)
T ss_pred CCCEEEeeEEEecCCCCCcccCCCCCcEEEEEEecccccccCCCcc--EEEEEECCEEEECCcccCcEEeeccCCcCCce
Confidence 78899999987432 2379999731 110000 00001111111223444454442 467
Q ss_pred cEEEeecccCCCceEEEEEEEeCCcceeeceEEEEEe
Q psy14532 75 TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVT 111 (258)
Q Consensus 75 ~l~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~ 111 (258)
+|.|.++ +.+|+|.|+|.+........ ..+.|.|.
T Consensus 80 sL~i~~v-~~sD~G~Y~C~V~~g~~~~~-~~v~L~V~ 114 (117)
T cd05901 80 SLTIVKL-RASDAGVYRCEVMHGIEDTQ-DTVSLDVS 114 (117)
T ss_pred EEEEccc-ccccCEEEEEEEEECCcccE-EEEEEEEE
Confidence 8999999 99999999999998876555 77777775
No 257
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=98.85 E-value=2.4e-08 Score=62.22 Aligned_cols=73 Identities=29% Similarity=0.533 Sum_probs=52.8
Q ss_pred CCcEEEEeeeCcccCceEEEEeCCcccC------------------CCcceEEecCCeEEEEecccCCCCcEEEEEEEeC
Q psy14532 127 GEPLYLGCPVAGYPIESITWQKGVQQLP------------------LNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNK 188 (258)
Q Consensus 127 g~~~~l~C~~~~~~~~~i~W~~~~~~~~------------------~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~ 188 (258)
|++|+|.|.........+.|++...... ...+..+..+++|.|.+++. +|+|.|+|.+...
T Consensus 1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~l~~-~DsG~Y~c~v~~~ 79 (92)
T cd05741 1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPNGSLLIQNLTK-EDSGTYTLQIIST 79 (92)
T ss_pred CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCCceEEEccCCc-hhcEEEEEEEEcC
Confidence 7899999988765566899998653221 12334455667899999997 9999999999987
Q ss_pred CCCCccceEEEE
Q psy14532 189 QGRSSSQNVHIS 200 (258)
Q Consensus 189 ~~~~~~~~~~l~ 200 (258)
.+......+.|.
T Consensus 80 ~~~~~~~~~~l~ 91 (92)
T cd05741 80 NGVTENAKFFLR 91 (92)
T ss_pred CCcEEEEEEEEE
Confidence 654444444443
No 258
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=98.85 E-value=2.3e-08 Score=62.05 Aligned_cols=84 Identities=17% Similarity=0.243 Sum_probs=49.4
Q ss_pred CceEEEEEEee-cCCCeEEEeeCCE----eCcCCccccceecccceeeccccccceeee----eCCcEEEeecccCCCce
Q psy14532 18 PPVSLKCIATG-NPTPHISWKLDGY----PLAGDRHENKNRIGEARVQQLPLNRRQKVF----PNGTLLIENVQKDHDRG 88 (258)
Q Consensus 18 ~~v~l~C~~~~-~~~~~v~W~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~i~~~~~~~d~G 88 (258)
+.++|.|.... ....+|.|.|... .+..........+. .++.+|.... .+.+|.|.++ +.+|+|
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~------~~y~~Rv~f~~~~~~d~sI~i~nv-t~~D~G 73 (96)
T cd05889 1 EKMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIE------DKYRGRVYFLNSTREDMSLSFNNA-TEEDVG 73 (96)
T ss_pred CCEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEEC------ccccCeEEEecCCCCccEEEEcCC-CcccCE
Confidence 46899999764 2455899998421 12111111111111 1222332222 4688999999 999999
Q ss_pred EEEEEEEeCCcceeeceEEE
Q psy14532 89 VYWCTATNKQGRSSSQNVHI 108 (258)
Q Consensus 89 ~Y~C~~~~~~~~~~~~~~~l 108 (258)
.|+|.+...+.....+.+.+
T Consensus 74 ~Y~C~~~t~P~g~~~~~i~~ 93 (96)
T cd05889 74 LYCCSLVTYPQGSWEKVIEV 93 (96)
T ss_pred EEEEEEEeCCCCCeEEEEEE
Confidence 99999987654443254443
No 259
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=98.84 E-value=3.3e-08 Score=61.15 Aligned_cols=80 Identities=21% Similarity=0.226 Sum_probs=58.6
Q ss_pred CCcceecCCcEEEEeeeCcccCce-EEEEeCCcccCCCcc--eEEe------cCCeEEEEecccCCCCcEEEEEEEeCCC
Q psy14532 120 GNVSAIAGEPLYLGCPVAGYPIES-ITWQKGVQQLPLNRR--QKVF------PNGTLLIENVQKDHDRGVYWCTATNKQG 190 (258)
Q Consensus 120 ~~~~~~~g~~~~l~C~~~~~~~~~-i~W~~~~~~~~~~~~--~~~~------~~~~l~i~~~~~~~~~g~y~C~~~~~~~ 190 (258)
....+.+|+.+.|.|.++++|.|. +.|.+++..+..... .... ..+.|.|..++. ++.|.|+|.|.|...
T Consensus 11 ~~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~-~E~G~YTf~a~N~~~ 89 (101)
T cd05860 11 TTIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKG-TEGGTYTFLVSNSDA 89 (101)
T ss_pred ceEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecCh-hhCcEEEEEEECCCC
Confidence 346788999999999999999996 999998765432222 1111 124689999987 999999999999876
Q ss_pred CCccceEEEEe
Q psy14532 191 RSSSQNVHISV 201 (258)
Q Consensus 191 ~~~~~~~~l~v 201 (258)
..+.++.|.|
T Consensus 90 -~~s~tF~l~v 99 (101)
T cd05860 90 -SASVTFNVYV 99 (101)
T ss_pred -eEEEEEEEEE
Confidence 3445555544
No 260
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.83 E-value=1.1e-08 Score=63.32 Aligned_cols=67 Identities=22% Similarity=0.345 Sum_probs=48.1
Q ss_pred ceecCCcEEEEeeeCcccCceEEEEeCCcccC--------------CCcceEEe----c--CCeEEEEecccCCCCcEEE
Q psy14532 123 SAIAGEPLYLGCPVAGYPIESITWQKGVQQLP--------------LNRRQKVF----P--NGTLLIENVQKDHDRGVYW 182 (258)
Q Consensus 123 ~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~--------------~~~~~~~~----~--~~~l~i~~~~~~~~~g~y~ 182 (258)
.+..|++++|.|.+.+.+.+.+.|++++.... ...+.... . +..|.|.++.. +|+|.|.
T Consensus 3 ~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~-sDsgtY~ 81 (94)
T cd07690 3 LGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKI-EDSDTYI 81 (94)
T ss_pred EeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCH-HHCEEEE
Confidence 46789999999999888888999996552211 01111111 1 12599999998 9999999
Q ss_pred EEEEeCCC
Q psy14532 183 CTATNKQG 190 (258)
Q Consensus 183 C~~~~~~~ 190 (258)
|.+.+..+
T Consensus 82 C~v~~~~~ 89 (94)
T cd07690 82 CEVEDKKE 89 (94)
T ss_pred EEECCccc
Confidence 99998754
No 261
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.81 E-value=8.1e-08 Score=58.36 Aligned_cols=70 Identities=27% Similarity=0.411 Sum_probs=44.7
Q ss_pred ceEEEEEEee-cCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEEEEEEeC
Q psy14532 19 PVSLKCIATG-NPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNK 97 (258)
Q Consensus 19 ~v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~~~~~ 97 (258)
.+.|.|.+.+ .|.+.+.|+|++..+..... ...... ..........|.|... ..+|.|.|+|.+.+.
T Consensus 1 ~~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~-~~~~~~----------~~~~~~~~s~L~i~~~-~~~~~~~y~C~a~n~ 68 (82)
T cd05759 1 PYNLTCRARGAKPAAEIIWFRDGEVLDGATY-SKELLK----------DGKRETTVSTLPITPS-DHDTGRTFTCRARNE 68 (82)
T ss_pred CEEEEEEEeCccCCCEEEEEECCEEccCcee-eeeEec----------CCCeEEEEEEEEEeCc-eecCCCEEEEEEcCc
Confidence 3689999987 57789999999988754311 000000 0001111235667766 777889999999987
Q ss_pred Ccc
Q psy14532 98 QGR 100 (258)
Q Consensus 98 ~~~ 100 (258)
...
T Consensus 69 ~l~ 71 (82)
T cd05759 69 ALP 71 (82)
T ss_pred cCC
Confidence 643
No 262
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=98.79 E-value=7.4e-08 Score=59.82 Aligned_cols=68 Identities=21% Similarity=0.373 Sum_probs=48.8
Q ss_pred cceecCCcEEEEeeeC------cc-----cCceEEEEeCCcccCCCcc-----eEE-ecCCeEEEEecccCCCCcEEEEE
Q psy14532 122 VSAIAGEPLYLGCPVA------GY-----PIESITWQKGVQQLPLNRR-----QKV-FPNGTLLIENVQKDHDRGVYWCT 184 (258)
Q Consensus 122 ~~~~~g~~~~l~C~~~------~~-----~~~~i~W~~~~~~~~~~~~-----~~~-~~~~~l~i~~~~~~~~~g~y~C~ 184 (258)
..+.+|+.+.|.|... ++ ....+.|+|++........ .++ .....|.|.++.. +|+|.|+|.
T Consensus 10 ~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~~Lwf~Pa~~-eDSG~Y~C~ 88 (104)
T cd05896 10 YMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEEDSIWFRPAEL-QDSGLYTCV 88 (104)
T ss_pred EEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeCCEEEEEeCCh-hhCeEEEEE
Confidence 4577899999999861 11 1347999998754443221 122 3556799999998 999999999
Q ss_pred EEeCCC
Q psy14532 185 ATNKQG 190 (258)
Q Consensus 185 ~~~~~~ 190 (258)
+.|...
T Consensus 89 ~rN~t~ 94 (104)
T cd05896 89 LRNSTY 94 (104)
T ss_pred ECCCCc
Confidence 998753
No 263
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.78 E-value=3.9e-08 Score=64.09 Aligned_cols=85 Identities=18% Similarity=0.193 Sum_probs=52.9
Q ss_pred ceeeceeeeecCCCceEEEEEEeec-CCCeEEEeeCC--EeCcCCccccceecccceeeccccccceeee-----eCCcE
Q psy14532 5 LIYKFIQQTLQPGPPVSLKCIATGN-PTPHISWKLDG--YPLAGDRHENKNRIGEARVQQLPLNRRQKVF-----PNGTL 76 (258)
Q Consensus 5 ~~~~~~~~~~~~g~~v~l~C~~~~~-~~~~v~W~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l 76 (258)
+.+.+..+.+.+|++|+|.|..... ....+.|+|.. ..+. ..+.........+..|..+. .+.+|
T Consensus 2 v~q~~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~-------~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL 74 (116)
T cd07706 2 VTQAQPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMT-------FLIRQKSIYGNATKGRYSVNFQKAQKSISL 74 (116)
T ss_pred cEEeCCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceE-------EEEEecCccCCccCCeEEEEEeccCCEEEE
Confidence 4567778889999999999997653 34579999842 1110 00000000111112222221 23469
Q ss_pred EEeecccCCCceEEEEEEEeC
Q psy14532 77 LIENVQKDHDRGVYWCTATNK 97 (258)
Q Consensus 77 ~i~~~~~~~d~G~Y~C~~~~~ 97 (258)
.|.++ +.+|+|.|.|.+...
T Consensus 75 ~I~~~-~~~Dsg~Y~C~~~~~ 94 (116)
T cd07706 75 TISAL-QLEDSAKYFCALSTL 94 (116)
T ss_pred EECCC-CHHHCEEEEEEEECC
Confidence 99999 999999999999853
No 264
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.77 E-value=3.3e-08 Score=62.30 Aligned_cols=80 Identities=14% Similarity=0.228 Sum_probs=45.6
Q ss_pred eecCCCceEEEEEEeec--CCCeEEEeeCCE--eCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCce
Q psy14532 13 TLQPGPPVSLKCIATGN--PTPHISWKLDGY--PLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRG 88 (258)
Q Consensus 13 ~~~~g~~v~l~C~~~~~--~~~~v~W~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G 88 (258)
.+.+|++|+|.|..... ....+.|||... ....- .............++... ......+|.|.++ +.+|+|
T Consensus 2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l---~~~~~~~~~~~~~rf~~~-~~~~~~~L~I~~~-~~~Dsg 76 (98)
T cd04984 2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYL---IYEDSDRPSGIPDRFSGS-KSGNTASLTISGA-QTEDEA 76 (98)
T ss_pred ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEE---EEeccccCCCCCCCEEEE-ccCCEEEEEECCC-ChhhCE
Confidence 57899999999998654 456799998421 11100 000000000000111110 1112346999999 999999
Q ss_pred EEEEEEEeC
Q psy14532 89 VYWCTATNK 97 (258)
Q Consensus 89 ~Y~C~~~~~ 97 (258)
.|.|.+.+.
T Consensus 77 ~Y~C~~~~~ 85 (98)
T cd04984 77 DYYCQVWDS 85 (98)
T ss_pred EEEEEEccC
Confidence 999998753
No 265
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=98.73 E-value=8.6e-08 Score=62.66 Aligned_cols=88 Identities=17% Similarity=0.157 Sum_probs=51.1
Q ss_pred eeceeeeecCCCceEEEEEEeecC------CCeEEEeeCCEeCcCCccccceecccceeeccccccceee-----eeCCc
Q psy14532 7 YKFIQQTLQPGPPVSLKCIATGNP------TPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKV-----FPNGT 75 (258)
Q Consensus 7 ~~~~~~~~~~g~~v~l~C~~~~~~------~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~ 75 (258)
..|..+.+.+|++|+|.|...... ...+.|||....-.... ..............+..|... ..+.+
T Consensus 4 q~P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~--~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~s 81 (119)
T cd05712 4 WMPKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRP--PVATNNRSRLVHESTRGRFRLLGDLGKKNCS 81 (119)
T ss_pred cCCCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCC--cEEEcCCCccccccccccEEEecCCCCCEEE
Confidence 356778899999999999865321 34689998532100000 000001011111122233222 22457
Q ss_pred EEEeecccCCCceEEEEEEEeC
Q psy14532 76 LLIENVQKDHDRGVYWCTATNK 97 (258)
Q Consensus 76 l~i~~~~~~~d~G~Y~C~~~~~ 97 (258)
|.|.++ +.+|+|.|.|.+...
T Consensus 82 L~I~~l-~~~Dsg~Y~C~~~~~ 102 (119)
T cd05712 82 LLISDA-QPEDSGKYFFRVELG 102 (119)
T ss_pred EEEccC-ChhhCeEEEEEEEcC
Confidence 999999 999999999998764
No 266
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=98.70 E-value=1.7e-08 Score=60.23 Aligned_cols=61 Identities=36% Similarity=0.596 Sum_probs=42.1
Q ss_pred cCCcEEEEeeeCccc-CceEEEEeCCcccCCCcceEEecCCeEEEEecccCCCCcEEEEEEEe
Q psy14532 126 AGEPLYLGCPVAGYP-IESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATN 187 (258)
Q Consensus 126 ~g~~~~l~C~~~~~~-~~~i~W~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~ 187 (258)
.+..+.|.|.+.+.+ .+.+.|+.................+.|.|.++.. +|.|.|+|.|.|
T Consensus 14 ~~~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~-~~~g~y~C~a~N 75 (75)
T PF13927_consen 14 SGGSVTLTCSAEGGPPPPSISWYDSNPSFNSNSRGSSSSNSTLTISNVTR-SDNGTYTCIASN 75 (75)
T ss_dssp TTEEEEEEEEESSEESSEEEEEETEEEEEEEEEEEEEEEEEEEEESSCCG-GGTEEEEEEEEE
T ss_pred eceeEEEEEEEccccCCeEEEEEecCCceeeeeeeccceeeEEEEccCCH-HhCcEEEEEEEC
Confidence 333499999998877 8899999111111111222233456799999987 999999999986
No 267
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=98.66 E-value=2.4e-07 Score=57.73 Aligned_cols=72 Identities=17% Similarity=0.251 Sum_probs=49.8
Q ss_pred CeeccCCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCc---ceEEecCCeEEEEecccCCCCcEEEEEEEe
Q psy14532 114 PFVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNR---RQKVFPNGTLLIENVQKDHDRGVYWCTATN 187 (258)
Q Consensus 114 ~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~---~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~ 187 (258)
|.+...+...+..|++|+|.|.... ....+.|+|++....... .........+.|.+++. +|+|.|.|....
T Consensus 2 P~l~a~p~~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~-~~~G~Y~C~~~~ 76 (94)
T cd05711 2 PFLSAHPSPVVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTP-AHAGTYRCYGSY 76 (94)
T ss_pred CEEEecCCCccCCCCeEEEEEecCC-CCCEEEEEECCCCCCceecccccCCeEEEEEEecCCCc-ccCEEEEEEEEC
Confidence 3444555667889999999998754 445799999887643211 00011223688999987 999999999864
No 268
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.64 E-value=5.6e-07 Score=53.80 Aligned_cols=79 Identities=16% Similarity=0.294 Sum_probs=49.8
Q ss_pred ceEEEEEEee-cCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEEEEEEeC
Q psy14532 19 PVSLKCIATG-NPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNK 97 (258)
Q Consensus 19 ~v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~~~~~ 97 (258)
.+.|.|.+.+ .|...|.|+|++.++...... ..... .......+|.+..- ..+|...|+|.+.+.
T Consensus 1 ~~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~-~~~~~------------~~~t~~S~L~~~p~-~eDdG~~~~C~a~~~ 66 (82)
T cd05883 1 EIELNCTAMASKPAATIRWFKGNKELTGKSTV-EETWS------------RMFTVTSQLMLKVT-KEDDGVPVICLVDHP 66 (82)
T ss_pred CEEEEEEecCCCCCCEEEEEECCEECcCcccc-eeccC------------CCcEEEEEEEEECc-hhhCCCEEEEEEcCc
Confidence 3789999877 588899999999888654110 00000 01112335666555 777778999999987
Q ss_pred CcceeeceEEEEEe
Q psy14532 98 QGRSSSQNVHISVT 111 (258)
Q Consensus 98 ~~~~~~~~~~l~v~ 111 (258)
..........|.|.
T Consensus 67 ~l~~~~~~~~L~V~ 80 (82)
T cd05883 67 AVKDLQTQRYLEVQ 80 (82)
T ss_pred ccCCceeeEEEEEE
Confidence 64333356666654
No 269
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=98.60 E-value=5.6e-07 Score=55.71 Aligned_cols=68 Identities=21% Similarity=0.343 Sum_probs=48.4
Q ss_pred CCcceecCCcEEEEeeeCcccCceEEEEeCCccc--------CCCcceEEec-CC---eEEEEecccCCCCcEEEEEEEe
Q psy14532 120 GNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQL--------PLNRRQKVFP-NG---TLLIENVQKDHDRGVYWCTATN 187 (258)
Q Consensus 120 ~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~--------~~~~~~~~~~-~~---~l~i~~~~~~~~~g~y~C~~~~ 187 (258)
..+.+.+|+++.|.|.+.+.....+.|++-+..+ ....++.... ++ +|.|.++.. +|+|.|.|.+..
T Consensus 5 ~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~-~D~G~Y~Cqv~t 83 (95)
T cd05881 5 EDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSL-SDEGRYFCQLYT 83 (95)
T ss_pred CceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCc-ccCEEEEEEEEc
Confidence 4567889999999999987655667777644221 2333444322 12 589999997 999999999986
Q ss_pred C
Q psy14532 188 K 188 (258)
Q Consensus 188 ~ 188 (258)
.
T Consensus 84 ~ 84 (95)
T cd05881 84 D 84 (95)
T ss_pred c
Confidence 4
No 270
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=98.59 E-value=5.4e-07 Score=58.62 Aligned_cols=86 Identities=19% Similarity=0.254 Sum_probs=47.9
Q ss_pred eceeeeecCCCceEEEEEEeecC--CCeEEEeeCC--EeCcCCccccceecccceeeccccccceeee--e---CCcEEE
Q psy14532 8 KFIQQTLQPGPPVSLKCIATGNP--TPHISWKLDG--YPLAGDRHENKNRIGEARVQQLPLNRRQKVF--P---NGTLLI 78 (258)
Q Consensus 8 ~~~~~~~~~g~~v~l~C~~~~~~--~~~v~W~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~l~i 78 (258)
.|....+.+|++|+|.|...... ...+.|||.. +....- ...............+..+.... . ...|.|
T Consensus 3 ~~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l--~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I 80 (117)
T cd04981 3 ESGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWI--GFINPGGGETYYADSVKGRFTITRDTSKSTVYLQL 80 (117)
T ss_pred cCCCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEE--EEEecCCCceEeCcccCCcEEEEEEccCCEEEEEE
Confidence 45667889999999999876432 4579999842 211000 00000000000011111222221 1 125899
Q ss_pred eecccCCCceEEEEEEEe
Q psy14532 79 ENVQKDHDRGVYWCTATN 96 (258)
Q Consensus 79 ~~~~~~~d~G~Y~C~~~~ 96 (258)
.++ ..+|+|.|.|.+..
T Consensus 81 ~~~-~~~Dsa~YyCa~~~ 97 (117)
T cd04981 81 NSL-TPEDTAVYYCARGL 97 (117)
T ss_pred CCC-CHHHCEEEEEEEEc
Confidence 999 99999999998864
No 271
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=98.58 E-value=1.1e-07 Score=59.98 Aligned_cols=80 Identities=19% Similarity=0.230 Sum_probs=48.7
Q ss_pred eeecCCCceEEEEEEee-cCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeee-----eCCcEEEeecccCC
Q psy14532 12 QTLQPGPPVSLKCIATG-NPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVF-----PNGTLLIENVQKDH 85 (258)
Q Consensus 12 ~~~~~g~~v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~i~~~~~~~ 85 (258)
+.+.+|++|+|.|.... .....+.|+|....... ..+ . ........+..+..+. ...+|.|.++ +.+
T Consensus 2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~----~~l-~-~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v-~~~ 74 (98)
T cd05716 2 VTGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCC----LII-V-SEGSVQSQYEGRVSLTDDPDNGVFTVTLNQL-RKE 74 (98)
T ss_pred EEEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCC----eEE-E-CCCccccccCCCEEEEecCCCCEEEEEEcCC-CHH
Confidence 45789999999998765 34567999985321100 000 0 0011111222232222 2346999999 999
Q ss_pred CceEEEEEEEeCC
Q psy14532 86 DRGVYWCTATNKQ 98 (258)
Q Consensus 86 d~G~Y~C~~~~~~ 98 (258)
|+|.|.|.+....
T Consensus 75 DsG~Y~C~~~~~~ 87 (98)
T cd05716 75 DAGWYWCGVGDDG 87 (98)
T ss_pred HCEEEEEEcccCC
Confidence 9999999987654
No 272
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.58 E-value=9.3e-07 Score=56.69 Aligned_cols=75 Identities=20% Similarity=0.326 Sum_probs=49.7
Q ss_pred cCCcEEEEeeeCccc------------CceEEEEeCC--ccc--------------CCCcceEEe------cCCeEEEEe
Q psy14532 126 AGEPLYLGCPVAGYP------------IESITWQKGV--QQL--------------PLNRRQKVF------PNGTLLIEN 171 (258)
Q Consensus 126 ~g~~~~l~C~~~~~~------------~~~i~W~~~~--~~~--------------~~~~~~~~~------~~~~l~i~~ 171 (258)
.|++++|.|...... .+.|.|++.. ... ....+..+. .+.+|.|.+
T Consensus 1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n 80 (112)
T cd05900 1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE 80 (112)
T ss_pred CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence 488999999885422 3589999842 110 111233332 355799999
Q ss_pred cccCCCCcEEEEEEEeCCCCCccceEEEEee
Q psy14532 172 VQKDHDRGVYWCTATNKQGRSSSQNVHISVT 202 (258)
Q Consensus 172 ~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~ 202 (258)
++. +|+|.|.|.+.+... ..+..+.|.|.
T Consensus 81 l~~-sDsG~Y~C~V~~g~~-~~~~~v~l~v~ 109 (112)
T cd05900 81 LRS-NDSGTYRCEVMHGIE-DNYDTVEVQVK 109 (112)
T ss_pred ccc-ccCEEEEEEEecCCC-CceeEEEEEEE
Confidence 998 999999999997644 34455556554
No 273
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=98.57 E-value=5.5e-07 Score=54.57 Aligned_cols=60 Identities=22% Similarity=0.314 Sum_probs=39.7
Q ss_pred EEEEeeeCc-ccCceEEEEeCCcccCCCcceEEe-cCCe------EEEEecccCCCCcEEEEEEEeCCC
Q psy14532 130 LYLGCPVAG-YPIESITWQKGVQQLPLNRRQKVF-PNGT------LLIENVQKDHDRGVYWCTATNKQG 190 (258)
Q Consensus 130 ~~l~C~~~~-~~~~~i~W~~~~~~~~~~~~~~~~-~~~~------l~i~~~~~~~~~g~y~C~~~~~~~ 190 (258)
+.|.|.+.+ +|.+.|+|++++..+......... .+++ |.+..... ++++.|+|.|.|...
T Consensus 2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~s~l~~~~~~~-d~g~~~~C~v~h~~l 69 (82)
T cd05761 2 VELTCTSSGSKPAATIRWFKGDKELKGVKLKEEDENGKTFTVTSSLRFQVDRE-DDGAPIICRVDHPAL 69 (82)
T ss_pred EEEEEEecCcCcCCeEEEEECCEEccCceeeEecCCCCEEEEEEEEEEEcchh-hCCCEEEEEEeChhc
Confidence 689999966 688899999999877533211111 2222 33333333 667799999999864
No 274
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=98.55 E-value=9.2e-07 Score=55.09 Aligned_cols=81 Identities=12% Similarity=0.176 Sum_probs=51.7
Q ss_pred cceeeceeeeecCCCceEEEEEEee-cCCCe--EEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEee
Q psy14532 4 QLIYKFIQQTLQPGPPVSLKCIATG-NPTPH--ISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIEN 80 (258)
Q Consensus 4 ~~~~~~~~~~~~~g~~v~l~C~~~~-~~~~~--v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~ 80 (258)
++...+.+..+.+|+.++|.|.+.+ .|... +.|||++..+....... .. ........+|.+.-
T Consensus 3 ~V~l~~~p~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~--~~------------~~~~~~~stlt~~~ 68 (100)
T cd05755 3 SVELSPLPSWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGD--NT------------KSPVNAPATITITV 68 (100)
T ss_pred eEEEecCCCcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceecc--cc------------CCCceeEEEEEEec
Confidence 4556666677899999999999987 46665 79999998875431100 00 00011223455554
Q ss_pred cccCCCceEEEEEEEeCCc
Q psy14532 81 VQKDHDRGVYWCTATNKQG 99 (258)
Q Consensus 81 ~~~~~d~G~Y~C~~~~~~~ 99 (258)
. +.+|...|+|.+.+...
T Consensus 69 ~-r~D~g~~~sC~A~l~l~ 86 (100)
T cd05755 69 D-REDHGANFSCETELDLR 86 (100)
T ss_pred c-hhhCCcEEEEEEEeccC
Confidence 4 55555699999987654
No 275
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=98.55 E-value=3e-07 Score=58.89 Aligned_cols=83 Identities=19% Similarity=0.201 Sum_probs=44.5
Q ss_pred eecCCCceEEEEEEeec-CCCeEEEeeCCEeC-cCCccccceec-ccceeecccc-ccceee--ee---CCcEEEeeccc
Q psy14532 13 TLQPGPPVSLKCIATGN-PTPHISWKLDGYPL-AGDRHENKNRI-GEARVQQLPL-NRRQKV--FP---NGTLLIENVQK 83 (258)
Q Consensus 13 ~~~~g~~v~l~C~~~~~-~~~~v~W~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~-~~~~~~--~~---~~~l~i~~~~~ 83 (258)
.+.+|++|+|.|...+. ....+.|||..... ......-.... .........+ ..+... .. ...|.|.++ +
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~-~ 80 (107)
T cd07700 2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRV-K 80 (107)
T ss_pred EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCC-C
Confidence 57899999999998653 34579999852210 00000000000 0000000001 111111 11 235999999 9
Q ss_pred CCCceEEEEEEEe
Q psy14532 84 DHDRGVYWCTATN 96 (258)
Q Consensus 84 ~~d~G~Y~C~~~~ 96 (258)
.+|+|.|.|....
T Consensus 81 ~~Dsg~YyCa~~~ 93 (107)
T cd07700 81 PEDSGTYFCMTVG 93 (107)
T ss_pred HHHCEEEEEeEcC
Confidence 9999999999764
No 276
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=98.55 E-value=3e-07 Score=57.69 Aligned_cols=76 Identities=24% Similarity=0.358 Sum_probs=52.6
Q ss_pred ecCCcEEEEeeeCc-ccCceEEEEeCCcccC-----------------CCcceEEec-CCeEEEEecccCCCCcEEEEEE
Q psy14532 125 IAGEPLYLGCPVAG-YPIESITWQKGVQQLP-----------------LNRRQKVFP-NGTLLIENVQKDHDRGVYWCTA 185 (258)
Q Consensus 125 ~~g~~~~l~C~~~~-~~~~~i~W~~~~~~~~-----------------~~~~~~~~~-~~~l~i~~~~~~~~~g~y~C~~ 185 (258)
..|++|+|.|.... .....+.|++....+. ...+..+.. +.+|.|.+++. +|+|.|.|.+
T Consensus 2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~-~DsG~Y~c~v 80 (97)
T cd05775 2 ILGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKM-EDAGSYRAEI 80 (97)
T ss_pred ccCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCch-HHCEEEEEEE
Confidence 36899999998754 4456899997532110 011233323 36799999998 9999999999
Q ss_pred EeCCCCCccceEEEEe
Q psy14532 186 TNKQGRSSSQNVHISV 201 (258)
Q Consensus 186 ~~~~~~~~~~~~~l~v 201 (258)
....+......+.|.|
T Consensus 81 ~~~~~~~~~~~f~L~v 96 (97)
T cd05775 81 NTKNGVTITKEFTLHI 96 (97)
T ss_pred EcCCCCeEEEEEEEEe
Confidence 9887655556666655
No 277
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.54 E-value=1e-06 Score=56.74 Aligned_cols=70 Identities=20% Similarity=0.303 Sum_probs=50.2
Q ss_pred CCCcceecCCcEEEEeeeCcccCceEEEEeCCcc--c------------CCCcceEEec-----CCeEEEEecccCCCCc
Q psy14532 119 MGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQ--L------------PLNRRQKVFP-----NGTLLIENVQKDHDRG 179 (258)
Q Consensus 119 ~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~--~------------~~~~~~~~~~-----~~~l~i~~~~~~~~~g 179 (258)
+..+.+.+|++++|.|.+.+.+...+.|++.... . ....++.+.. ...|.|.+++. +|+|
T Consensus 5 ~~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~-~DsG 83 (109)
T cd04983 5 PQSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQL-SDSA 83 (109)
T ss_pred CCceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCH-HHCE
Confidence 4456788999999999998767779999985321 0 0122333321 23699999997 9999
Q ss_pred EEEEEEEeCC
Q psy14532 180 VYWCTATNKQ 189 (258)
Q Consensus 180 ~y~C~~~~~~ 189 (258)
.|.|.+.+..
T Consensus 84 ~Y~C~~~~~~ 93 (109)
T cd04983 84 VYFCALSESG 93 (109)
T ss_pred EEEEEEecCC
Confidence 9999998653
No 278
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=98.50 E-value=1.2e-06 Score=56.05 Aligned_cols=76 Identities=21% Similarity=0.358 Sum_probs=50.5
Q ss_pred cCCcEEEEeeeCccc------CceEEEEeCC---cc---c--CCC----------cceEE----ecCCeEEEEecccCCC
Q psy14532 126 AGEPLYLGCPVAGYP------IESITWQKGV---QQ---L--PLN----------RRQKV----FPNGTLLIENVQKDHD 177 (258)
Q Consensus 126 ~g~~~~l~C~~~~~~------~~~i~W~~~~---~~---~--~~~----------~~~~~----~~~~~l~i~~~~~~~~ 177 (258)
.|++++|.|.....+ ...|.|++.. .. + ... .+... ..+.+|.|.+++. +|
T Consensus 1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~-sD 79 (106)
T cd05714 1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRL-ED 79 (106)
T ss_pred CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCH-HH
Confidence 488999999986532 4589999862 10 0 000 01111 1235799999997 99
Q ss_pred CcEEEEEEEeCCCCCccceEEEEeec
Q psy14532 178 RGVYWCTATNKQGRSSSQNVHISVTV 203 (258)
Q Consensus 178 ~g~y~C~~~~~~~~~~~~~~~l~v~~ 203 (258)
+|.|.|.+.+..+ .....+.|.|..
T Consensus 80 ~G~Y~C~v~~~~~-~~~~~v~L~V~~ 104 (106)
T cd05714 80 SGRYRCEVIDGIE-DEQDTVELEVRG 104 (106)
T ss_pred CEEEEEEEEcCCC-ceEEEEEEEEEE
Confidence 9999999998654 445677777653
No 279
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.50 E-value=6.4e-07 Score=57.24 Aligned_cols=66 Identities=26% Similarity=0.375 Sum_probs=46.6
Q ss_pred ceecCCcEEEEeeeCcc-cCceEEEEeCCcc--c---------------CCCcceEEe-----cCCeEEEEecccCCCCc
Q psy14532 123 SAIAGEPLYLGCPVAGY-PIESITWQKGVQQ--L---------------PLNRRQKVF-----PNGTLLIENVQKDHDRG 179 (258)
Q Consensus 123 ~~~~g~~~~l~C~~~~~-~~~~i~W~~~~~~--~---------------~~~~~~~~~-----~~~~l~i~~~~~~~~~g 179 (258)
.+.+|+.++|.|.+... +...+.|++.... . ....+..+. ....|.|.+++. +|+|
T Consensus 2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~-~D~G 80 (105)
T cd00099 2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQP-EDSA 80 (105)
T ss_pred eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCH-HHCE
Confidence 46789999999998775 5678999984321 0 011222221 123689999998 9999
Q ss_pred EEEEEEEeCC
Q psy14532 180 VYWCTATNKQ 189 (258)
Q Consensus 180 ~y~C~~~~~~ 189 (258)
.|.|.+.+..
T Consensus 81 ~Y~C~v~~~~ 90 (105)
T cd00099 81 VYYCAVSLSG 90 (105)
T ss_pred EEEEEEecCC
Confidence 9999998765
No 280
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.50 E-value=1.7e-06 Score=51.67 Aligned_cols=76 Identities=16% Similarity=0.242 Sum_probs=51.7
Q ss_pred eeeecCCCceEEEEEEeecCC--CeEEEeeCCE-eCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCc
Q psy14532 11 QQTLQPGPPVSLKCIATGNPT--PHISWKLDGY-PLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDR 87 (258)
Q Consensus 11 ~~~~~~g~~v~l~C~~~~~~~--~~v~W~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~ 87 (258)
+..+..|++++|+|.....+. +.++|...+. .+... .....+|.+.++ ...|+
T Consensus 8 ~~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~~~-----------------------~~~~ktL~~~qv-~~qdS 63 (88)
T cd07694 8 SDHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQIL-----------------------NQDKKTLNLVQL-GPNDS 63 (88)
T ss_pred CCeeecCCcEEEEEecCCCCCCCccEEEeCCCCccceec-----------------------cCCccEEEecee-CcccC
Confidence 456889999999999865444 4999996432 22111 012458999999 99999
Q ss_pred eEEEEEEEeCCcceeeceEEEEEe
Q psy14532 88 GVYWCTATNKQGRSSSQNVHISVT 111 (258)
Q Consensus 88 G~Y~C~~~~~~~~~~~~~~~l~v~ 111 (258)
|.++|.+........ ..+.+.|.
T Consensus 64 G~WtC~V~~~~k~~~-~~~~V~Vl 86 (88)
T cd07694 64 GTWDCIVSVNSSEKT-LKLDIKVL 86 (88)
T ss_pred CEEEEEEEECceEEE-EEeeEEEE
Confidence 999999986532222 44555543
No 281
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=98.47 E-value=3.2e-06 Score=51.23 Aligned_cols=60 Identities=23% Similarity=0.326 Sum_probs=40.1
Q ss_pred EEEEeeeCc-ccCceEEEEeCCcccCCCcc-eEEecC-Ce------EEEEecccCCCCcEEEEEEEeCCC
Q psy14532 130 LYLGCPVAG-YPIESITWQKGVQQLPLNRR-QKVFPN-GT------LLIENVQKDHDRGVYWCTATNKQG 190 (258)
Q Consensus 130 ~~l~C~~~~-~~~~~i~W~~~~~~~~~~~~-~~~~~~-~~------l~i~~~~~~~~~g~y~C~~~~~~~ 190 (258)
+.|.|.+.+ +|.+.|+|++++..+..... .....+ ++ |.+.... +++...|+|.+.+...
T Consensus 2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~~~~~~~~~~t~~~~s~l~~~~~~-~d~g~~~tC~v~h~~l 70 (83)
T cd07705 2 AKLRCTSSGSKPAANIKWRKGDQELEGAPTSVLEDGNGKTFTVSSSVEFQVTR-EDDGAEITCSVGHESL 70 (83)
T ss_pred EEEEEEecCccCCCEeEEEECCEECCCcceeEEECCCCCEEEEEEEEEEEecc-hhCCCEEEEEEECccc
Confidence 689999977 68889999999987654322 111222 23 3333333 3677899999999864
No 282
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=98.46 E-value=1.7e-06 Score=54.67 Aligned_cols=73 Identities=22% Similarity=0.317 Sum_probs=46.0
Q ss_pred CCcEEEEeeeCccc---CceEEEEeCCcc-----------cC------CCcceEEe------cCCeEEEEecccCCCCcE
Q psy14532 127 GEPLYLGCPVAGYP---IESITWQKGVQQ-----------LP------LNRRQKVF------PNGTLLIENVQKDHDRGV 180 (258)
Q Consensus 127 g~~~~l~C~~~~~~---~~~i~W~~~~~~-----------~~------~~~~~~~~------~~~~l~i~~~~~~~~~g~ 180 (258)
|+++.|.|...... ...+.|++.... .. ...+..+. .+.+|.|.+++. +|+|.
T Consensus 1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~-~D~G~ 79 (100)
T cd05713 1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRA-SDEGL 79 (100)
T ss_pred CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCCh-hhCEE
Confidence 67899999875321 236888874311 00 11222221 124699999997 99999
Q ss_pred EEEEEEeCCCCCccceEEEEe
Q psy14532 181 YWCTATNKQGRSSSQNVHISV 201 (258)
Q Consensus 181 y~C~~~~~~~~~~~~~~~l~v 201 (258)
|+|.+.+..+. ....+.|.|
T Consensus 80 Y~C~v~~~~~~-~~~~i~l~v 99 (100)
T cd05713 80 YTCFFQSDGFY-EEATVELKV 99 (100)
T ss_pred EEEEEecCCcE-EEEEEEEEE
Confidence 99999986553 445555554
No 283
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.46 E-value=1.7e-06 Score=55.35 Aligned_cols=75 Identities=20% Similarity=0.326 Sum_probs=49.8
Q ss_pred cCCcEEEEeeeCccc------CceEEEEeCCcc--------cC----------CCcceEEec----CCeEEEEecccCCC
Q psy14532 126 AGEPLYLGCPVAGYP------IESITWQKGVQQ--------LP----------LNRRQKVFP----NGTLLIENVQKDHD 177 (258)
Q Consensus 126 ~g~~~~l~C~~~~~~------~~~i~W~~~~~~--------~~----------~~~~~~~~~----~~~l~i~~~~~~~~ 177 (258)
.|++++|.|.....| ...|.|++.... +. ...+..+.. +.+|.|.+++. +|
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~-~D 79 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRL-ED 79 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCCh-HH
Confidence 488999999876542 357999985311 00 112222211 24699999997 99
Q ss_pred CcEEEEEEEeCCCCCccceEEEEee
Q psy14532 178 RGVYWCTATNKQGRSSSQNVHISVT 202 (258)
Q Consensus 178 ~g~y~C~~~~~~~~~~~~~~~l~v~ 202 (258)
+|.|.|.+.+..+ .....+.|.|.
T Consensus 80 sG~Y~C~v~~~~~-~~~~~~~l~v~ 103 (106)
T cd05877 80 YGRYRCEVIDGLE-DESVVVALRLR 103 (106)
T ss_pred CEEEEEEEEeccc-ceEEEEEEEEE
Confidence 9999999988765 34566666664
No 284
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=98.45 E-value=2.3e-06 Score=55.29 Aligned_cols=71 Identities=23% Similarity=0.354 Sum_probs=48.0
Q ss_pred CCCcceecCCcEEEEeeeCcc----cCceEEEEe---------------CCcccC-----CCcceEE-----ecCCeEEE
Q psy14532 119 MGNVSAIAGEPLYLGCPVAGY----PIESITWQK---------------GVQQLP-----LNRRQKV-----FPNGTLLI 169 (258)
Q Consensus 119 ~~~~~~~~g~~~~l~C~~~~~----~~~~i~W~~---------------~~~~~~-----~~~~~~~-----~~~~~l~i 169 (258)
+..+.+..|+.+.|.|.+... +...+.|.. ++.... ...+... ..+.++.|
T Consensus 5 ~~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I 84 (116)
T cd05879 5 DREVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVI 84 (116)
T ss_pred cceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEE
Confidence 345678899999999998542 245899943 222211 1122222 23457999
Q ss_pred EecccCCCCcEEEEEEEeCCC
Q psy14532 170 ENVQKDHDRGVYWCTATNKQG 190 (258)
Q Consensus 170 ~~~~~~~~~g~y~C~~~~~~~ 190 (258)
.+++. +|.|.|+|.+.|...
T Consensus 85 ~nv~~-sD~G~Y~C~v~n~p~ 104 (116)
T cd05879 85 HNLDY-TDNGTFTCDVKNPPD 104 (116)
T ss_pred ccCCc-ccCEEEEEEEEcCCC
Confidence 99998 999999999998754
No 285
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=98.45 E-value=1.2e-06 Score=54.80 Aligned_cols=75 Identities=20% Similarity=0.296 Sum_probs=47.4
Q ss_pred cCCCceEEEEEEeec-C-CCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEEE
Q psy14532 15 QPGPPVSLKCIATGN-P-TPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWC 92 (258)
Q Consensus 15 ~~g~~v~l~C~~~~~-~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C 92 (258)
..|+.++|.|.+.++ | ...++|+++|..+............ ..........|.|... ...|.+.|+|
T Consensus 11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~----------~~gt~~~~s~l~v~~~-~~~~~~~y~C 79 (95)
T cd00098 11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPN----------SDGTYSVSSQLTVSPS-DWNSGDTYTC 79 (95)
T ss_pred HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccC----------CCCCEEEEEEEEECHH-HhCCCCCEEE
Confidence 479999999999997 5 3589999999887655210000000 0001111223555555 5569999999
Q ss_pred EEEeCCcc
Q psy14532 93 TATNKQGR 100 (258)
Q Consensus 93 ~~~~~~~~ 100 (258)
.+.+....
T Consensus 80 ~v~h~~~~ 87 (95)
T cd00098 80 VVTHESLP 87 (95)
T ss_pred EEEeCCCC
Confidence 99987643
No 286
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.44 E-value=3.5e-06 Score=50.99 Aligned_cols=60 Identities=20% Similarity=0.269 Sum_probs=40.3
Q ss_pred EEEEeeeCc-ccCceEEEEeCCcccCCCcceEE--ecCC------eEEEEecccCCCCcEEEEEEEeCCC
Q psy14532 130 LYLGCPVAG-YPIESITWQKGVQQLPLNRRQKV--FPNG------TLLIENVQKDHDRGVYWCTATNKQG 190 (258)
Q Consensus 130 ~~l~C~~~~-~~~~~i~W~~~~~~~~~~~~~~~--~~~~------~l~i~~~~~~~~~g~y~C~~~~~~~ 190 (258)
+.|.|.+.+ +|...|+|++++..+........ ..++ .|.+..... ++...|+|+|.+...
T Consensus 2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~-d~g~~ytC~v~h~~l 70 (83)
T cd05884 2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRS-DDGVAIICRVDHESL 70 (83)
T ss_pred EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccc-cCCCEEEEEEechhc
Confidence 689999977 77889999999988754322111 1222 344444333 667799999998753
No 287
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=98.44 E-value=3.7e-07 Score=58.05 Aligned_cols=83 Identities=16% Similarity=0.193 Sum_probs=45.2
Q ss_pred eecCCCceEEEEEEeecCCCeEEEeeCCEe-CcCCccccceecccce--eeccccccceee---eeCCcEEEeecccCCC
Q psy14532 13 TLQPGPPVSLKCIATGNPTPHISWKLDGYP-LAGDRHENKNRIGEAR--VQQLPLNRRQKV---FPNGTLLIENVQKDHD 86 (258)
Q Consensus 13 ~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~---~~~~~l~i~~~~~~~d 86 (258)
.+.+|++|+|.|.........+.|||.... ................ ........+... ....+|.|.++ +.+|
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~-~~sD 80 (104)
T cd05720 2 DAELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNF-QKEN 80 (104)
T ss_pred cccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCC-CHHH
Confidence 468999999999886544567999985311 0000000000000000 001111111111 12346999999 9999
Q ss_pred ceEEEEEEEe
Q psy14532 87 RGVYWCTATN 96 (258)
Q Consensus 87 ~G~Y~C~~~~ 96 (258)
+|.|.|.+..
T Consensus 81 sgtY~Ca~~~ 90 (104)
T cd05720 81 EGYYFCSVAS 90 (104)
T ss_pred CEEEEEEEcc
Confidence 9999998763
No 288
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=98.43 E-value=4.9e-06 Score=54.12 Aligned_cols=71 Identities=25% Similarity=0.436 Sum_probs=46.7
Q ss_pred CCCcceecCCcEEEEeeeCccc----CceEEEEeCCc--c-----c--------C-CC----cceEEec-----CCeEEE
Q psy14532 119 MGNVSAIAGEPLYLGCPVAGYP----IESITWQKGVQ--Q-----L--------P-LN----RRQKVFP-----NGTLLI 169 (258)
Q Consensus 119 ~~~~~~~~g~~~~l~C~~~~~~----~~~i~W~~~~~--~-----~--------~-~~----~~~~~~~-----~~~l~i 169 (258)
+..+.+..|+.++|.|...... ...+.|++... . + . .. .+..+.. +.+|.|
T Consensus 5 p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I 84 (116)
T cd05715 5 PREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVI 84 (116)
T ss_pred CCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEE
Confidence 4556788999999999875422 24699986321 0 0 0 00 1111111 246999
Q ss_pred EecccCCCCcEEEEEEEeCCC
Q psy14532 170 ENVQKDHDRGVYWCTATNKQG 190 (258)
Q Consensus 170 ~~~~~~~~~g~y~C~~~~~~~ 190 (258)
.+++. +|+|.|.|.+.+...
T Consensus 85 ~~v~~-~D~G~Y~C~v~~~~~ 104 (116)
T cd05715 85 HNLQF-TDNGTYTCDVKNPPD 104 (116)
T ss_pred eeCCc-ccCEEEEEEEEeCCC
Confidence 99998 999999999998754
No 289
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=98.42 E-value=3.5e-06 Score=51.01 Aligned_cols=69 Identities=19% Similarity=0.332 Sum_probs=41.8
Q ss_pred ceEEEEEEeec-CCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEEEEEEeC
Q psy14532 19 PVSLKCIATGN-PTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNK 97 (258)
Q Consensus 19 ~v~l~C~~~~~-~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~~~~~ 97 (258)
.+.|.|.+.+. |.+.|.|+++++.+.... ..... ... ........|.+... ..++.+.|+|.+.+.
T Consensus 1 ~~~L~C~~~~~~P~~~v~W~~~~~~l~~~~---~~~~~--------~~~-~~~~~~s~l~~~~~-~~d~g~~~~C~v~h~ 67 (82)
T cd05761 1 EVELTCTSSGSKPAATIRWFKGDKELKGVK---LKEED--------ENG-KTFTVTSSLRFQVD-REDDGAPIICRVDHP 67 (82)
T ss_pred CEEEEEEecCcCcCCeEEEEECCEEccCce---eeEec--------CCC-CEEEEEEEEEEEcc-hhhCCCEEEEEEeCh
Confidence 37899999875 788999999998875331 00000 000 01111223444444 555667999999987
Q ss_pred Ccc
Q psy14532 98 QGR 100 (258)
Q Consensus 98 ~~~ 100 (258)
...
T Consensus 68 ~l~ 70 (82)
T cd05761 68 ALK 70 (82)
T ss_pred hcC
Confidence 644
No 290
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=98.41 E-value=2.9e-06 Score=53.44 Aligned_cols=72 Identities=26% Similarity=0.469 Sum_probs=45.8
Q ss_pred CcEEEEeeeCccc---CceEEEEeCCcc---------------cC--CCcceEEe----cCCeEEEEecccCCCCcEEEE
Q psy14532 128 EPLYLGCPVAGYP---IESITWQKGVQQ---------------LP--LNRRQKVF----PNGTLLIENVQKDHDRGVYWC 183 (258)
Q Consensus 128 ~~~~l~C~~~~~~---~~~i~W~~~~~~---------------~~--~~~~~~~~----~~~~l~i~~~~~~~~~g~y~C 183 (258)
++++|.|.....+ ...|.|++.... +. ...+..+. .+.+|.|.+++. +|+|.|.|
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~-~D~G~Y~C 79 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRL-EDEGNYIC 79 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCc-ccCEEEEE
Confidence 4789999886533 447999985431 00 01122222 245799999997 99999999
Q ss_pred EEEeC-CCCCccceEEEEe
Q psy14532 184 TATNK-QGRSSSQNVHISV 201 (258)
Q Consensus 184 ~~~~~-~~~~~~~~~~l~v 201 (258)
.+... .+ .....+.|.|
T Consensus 80 ~v~~~~~g-~~~~~~~l~V 97 (98)
T cd05718 80 EFATFPQG-NRQKVTTLTV 97 (98)
T ss_pred EEEeCCCC-cEEEEEEEEe
Confidence 99754 34 3445555554
No 291
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=98.40 E-value=6.3e-06 Score=51.23 Aligned_cols=78 Identities=22% Similarity=0.336 Sum_probs=46.5
Q ss_pred CCcceeeceeeeecCCCceEEEEEEeec-CCC-eEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcE---
Q psy14532 2 HPQLIYKFIQQTLQPGPPVSLKCIATGN-PTP-HISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTL--- 76 (258)
Q Consensus 2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~-~~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--- 76 (258)
||.+........ |+.++|.|.+.++ |.. .+.|+++++.+.......... ...+++.
T Consensus 2 pP~v~v~~~~~~---~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~----------------~~~d~ty~~~ 62 (93)
T cd07698 2 PPEVRVTRKRAP---DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEIL----------------PNGDGTYQLW 62 (93)
T ss_pred CCEEEEEecCCC---CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceE----------------ECCCCeEEEE
Confidence 677755443332 7889999999995 443 899999986433221111100 0112221
Q ss_pred EEeecccCCCceEEEEEEEeCCc
Q psy14532 77 LIENVQKDHDRGVYWCTATNKQG 99 (258)
Q Consensus 77 ~i~~~~~~~d~G~Y~C~~~~~~~ 99 (258)
....+ ...+.+.|+|.+.+...
T Consensus 63 s~l~v-~~~~~~~ytC~V~H~~~ 84 (93)
T cd07698 63 VTLEV-PPEDKARYSCRVEHSGL 84 (93)
T ss_pred EEEEE-CCCCCCEEEEEEEeCCC
Confidence 13344 55588999999988654
No 292
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=98.39 E-value=2.1e-06 Score=53.52 Aligned_cols=68 Identities=18% Similarity=0.251 Sum_probs=45.9
Q ss_pred ceecCCcEEEEeeeCc-ccCce--EEEEeCCcccCCCcceE-----EecCCeEEEEecccCCCCcEEEEEEEeCCCC
Q psy14532 123 SAIAGEPLYLGCPVAG-YPIES--ITWQKGVQQLPLNRRQK-----VFPNGTLLIENVQKDHDRGVYWCTATNKQGR 191 (258)
Q Consensus 123 ~~~~g~~~~l~C~~~~-~~~~~--i~W~~~~~~~~~~~~~~-----~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~ 191 (258)
.+.+|+.++|.|.+.+ .|.+. |.|++++..+....... .....++.+... +++|...|+|+|.+..+.
T Consensus 12 ~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~~~-r~D~g~~~sC~A~l~l~~ 87 (100)
T cd05755 12 WQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITITVD-REDHGANFSCETELDLRP 87 (100)
T ss_pred cccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEEecc-hhhCCcEEEEEEEeccCc
Confidence 4679999999999976 67775 79999988775422111 112234555543 435555999999987653
No 293
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.37 E-value=5.9e-06 Score=49.40 Aligned_cols=64 Identities=14% Similarity=0.179 Sum_probs=46.8
Q ss_pred CcceecCCcEEEEeeeCccc--CceEEEEeCCcccCCCcceEEecCCeEEEEecccCCCCcEEEEEEEeC
Q psy14532 121 NVSAIAGEPLYLGCPVAGYP--IESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNK 188 (258)
Q Consensus 121 ~~~~~~g~~~~l~C~~~~~~--~~~i~W~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~ 188 (258)
...+..|++++|+|.....+ .+.|.|...+...- ........+|.+.++.. .|+|.++|.+...
T Consensus 8 ~~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~---~~~~~~~ktL~~~qv~~-qdSG~WtC~V~~~ 73 (88)
T cd07694 8 SDHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSK---QILNQDKKTLNLVQLGP-NDSGTWDCIVSVN 73 (88)
T ss_pred CCeeecCCcEEEEEecCCCCCCCccEEEeCCCCccc---eeccCCccEEEeceeCc-ccCCEEEEEEEEC
Confidence 44678999999999996534 45999987443311 11113456799999997 9999999999865
No 294
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.36 E-value=2.8e-06 Score=54.72 Aligned_cols=68 Identities=18% Similarity=0.313 Sum_probs=48.4
Q ss_pred CCCcceecCCcEEEEeeeCcccCceEEEEeCCc--ccC----------------CCcceEEe----cCCeEEEEecccCC
Q psy14532 119 MGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQ--QLP----------------LNRRQKVF----PNGTLLIENVQKDH 176 (258)
Q Consensus 119 ~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~--~~~----------------~~~~~~~~----~~~~l~i~~~~~~~ 176 (258)
+....+.+|++++|.|.+.+ +...+.|+|... ... ...+.... ...+|.|.+++. +
T Consensus 5 p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~-~ 82 (110)
T cd05899 5 PRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEP-E 82 (110)
T ss_pred CCceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCCh-h
Confidence 44567889999999999977 667899998532 111 01222221 123699999997 9
Q ss_pred CCcEEEEEEEeC
Q psy14532 177 DRGVYWCTATNK 188 (258)
Q Consensus 177 ~~g~y~C~~~~~ 188 (258)
|+|.|.|.+.+.
T Consensus 83 Dsg~Y~Ca~~~~ 94 (110)
T cd05899 83 DSAVYLCASSLG 94 (110)
T ss_pred hCEEEEEEeeCC
Confidence 999999998764
No 295
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=98.35 E-value=5.2e-06 Score=53.34 Aligned_cols=76 Identities=22% Similarity=0.365 Sum_probs=50.2
Q ss_pred cCCcEEEEeeeCccc----------CceEEEEeCC--ccc--------------CCCcceEEe------cCCeEEEEecc
Q psy14532 126 AGEPLYLGCPVAGYP----------IESITWQKGV--QQL--------------PLNRRQKVF------PNGTLLIENVQ 173 (258)
Q Consensus 126 ~g~~~~l~C~~~~~~----------~~~i~W~~~~--~~~--------------~~~~~~~~~------~~~~l~i~~~~ 173 (258)
.|++++|.|.....+ ...|.|++.. ... ....+..+. .+.+|.|.+++
T Consensus 1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~ 80 (110)
T cd05878 1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR 80 (110)
T ss_pred CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence 488999999885432 2579999852 111 011232221 23469999999
Q ss_pred cCCCCcEEEEEEEeCCCCCccceEEEEeec
Q psy14532 174 KDHDRGVYWCTATNKQGRSSSQNVHISVTV 203 (258)
Q Consensus 174 ~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~ 203 (258)
. +|+|.|.|.+..... .....+.|.|..
T Consensus 81 ~-sD~G~Y~C~v~~~~~-~~~~~v~l~V~g 108 (110)
T cd05878 81 S-SDSGVYRCEVMHGIE-DEQDTVPLEVTG 108 (110)
T ss_pred h-hhCEEEEEEEEeCCC-cceEEEEEEEEE
Confidence 8 999999999998543 445666776653
No 296
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=98.33 E-value=1e-05 Score=52.42 Aligned_cols=71 Identities=24% Similarity=0.374 Sum_probs=46.8
Q ss_pred CCCcceecCCcEEEEeeeCccc----CceEEEEeC---Ccc---c-------------CCCcceEEe-----cCCeEEEE
Q psy14532 119 MGNVSAIAGEPLYLGCPVAGYP----IESITWQKG---VQQ---L-------------PLNRRQKVF-----PNGTLLIE 170 (258)
Q Consensus 119 ~~~~~~~~g~~~~l~C~~~~~~----~~~i~W~~~---~~~---~-------------~~~~~~~~~-----~~~~l~i~ 170 (258)
+..+.+..|++++|.|.....+ ...|.|++. +.. + ....+..+. .+.+|.|.
T Consensus 5 ~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~ 84 (115)
T cd05880 5 SKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIW 84 (115)
T ss_pred CceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEe
Confidence 4556788999999999875322 236999752 111 0 000111111 23469999
Q ss_pred ecccCCCCcEEEEEEEeCCC
Q psy14532 171 NVQKDHDRGVYWCTATNKQG 190 (258)
Q Consensus 171 ~~~~~~~~g~y~C~~~~~~~ 190 (258)
+++. +|+|.|+|.+.+...
T Consensus 85 ~v~~-~D~G~Y~C~v~~~~~ 103 (115)
T cd05880 85 QLQP-TDNGTYTCQVKNPPD 103 (115)
T ss_pred eCCh-hhCEEEEEEEEeCCC
Confidence 9998 999999999998654
No 297
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=98.33 E-value=2.2e-06 Score=53.64 Aligned_cols=65 Identities=23% Similarity=0.414 Sum_probs=45.3
Q ss_pred ecCCcEEEEeeeCcc-c-CceEEEEeCCcccCCCcc---eEEecCCe------EEEEecccCCCCcEEEEEEEeCCC
Q psy14532 125 IAGEPLYLGCPVAGY-P-IESITWQKGVQQLPLNRR---QKVFPNGT------LLIENVQKDHDRGVYWCTATNKQG 190 (258)
Q Consensus 125 ~~g~~~~l~C~~~~~-~-~~~i~W~~~~~~~~~~~~---~~~~~~~~------l~i~~~~~~~~~g~y~C~~~~~~~ 190 (258)
..|+.+.|.|.+.|. | ...++|++++..+..... .....+++ |.+..... .+.+.|+|.|.+...
T Consensus 11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~-~~~~~y~C~v~h~~~ 86 (95)
T cd00098 11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDW-NSGDTYTCVVTHESL 86 (95)
T ss_pred HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHh-CCCCCEEEEEEeCCC
Confidence 467899999999986 5 468999999987765432 11223333 44444333 689999999998754
No 298
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.32 E-value=5.4e-06 Score=53.03 Aligned_cols=69 Identities=22% Similarity=0.306 Sum_probs=46.8
Q ss_pred CCCcceecCCcEEEEeeeCccc-CceEEEEeCC--cccC------------CCcceEEecC---CeEEEEecccCCCCcE
Q psy14532 119 MGNVSAIAGEPLYLGCPVAGYP-IESITWQKGV--QQLP------------LNRRQKVFPN---GTLLIENVQKDHDRGV 180 (258)
Q Consensus 119 ~~~~~~~~g~~~~l~C~~~~~~-~~~i~W~~~~--~~~~------------~~~~~~~~~~---~~l~i~~~~~~~~~g~ 180 (258)
+....+.+|++++|.|.+.+.. ...+.|++.. .... ...+.....+ ..|.|.++.. +|+|.
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~-~Dsg~ 85 (106)
T cd04980 7 PATLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEP-EDAAV 85 (106)
T ss_pred CCcEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCCh-HHCEE
Confidence 4456788999999999987654 5679999843 1110 0112222211 2588999997 99999
Q ss_pred EEEEEEeC
Q psy14532 181 YWCTATNK 188 (258)
Q Consensus 181 y~C~~~~~ 188 (258)
|.|.+.+.
T Consensus 86 Y~Ca~~~~ 93 (106)
T cd04980 86 YYCQQYGT 93 (106)
T ss_pred EEEEEeCC
Confidence 99998653
No 299
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.32 E-value=1e-05 Score=48.95 Aligned_cols=69 Identities=16% Similarity=0.256 Sum_probs=41.8
Q ss_pred eEEEEEEee-cCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEEEEEEeCC
Q psy14532 20 VSLKCIATG-NPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQ 98 (258)
Q Consensus 20 v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~~~~~~ 98 (258)
++|.|.+.+ .|...++|+|+|..+..... ... ............+|.+... ...+...|+|.+.+..
T Consensus 2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~---~~~--------~~~~~~t~~~~s~L~~~~~-~~d~g~~ytC~v~h~~ 69 (83)
T cd05884 2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKY---LKE--------EDANRKTFTVSSTLDFRVD-RSDDGVAIICRVDHES 69 (83)
T ss_pred EEEEEEeCCccCCCEEEEEECCEECcCcee---eEe--------eCCCCCEEEEEEEEEEEcc-cccCCCEEEEEEechh
Confidence 689999988 46789999999998754311 000 0000011112234555544 5666789999999865
Q ss_pred cc
Q psy14532 99 GR 100 (258)
Q Consensus 99 ~~ 100 (258)
..
T Consensus 70 l~ 71 (83)
T cd05884 70 LN 71 (83)
T ss_pred cC
Confidence 43
No 300
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=98.32 E-value=1.7e-05 Score=49.03 Aligned_cols=79 Identities=16% Similarity=0.222 Sum_probs=48.7
Q ss_pred CCcceeeceeeeecCCCceEEEEEEeec-C-CCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEE--
Q psy14532 2 HPQLIYKFIQQTLQPGPPVSLKCIATGN-P-TPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLL-- 77 (258)
Q Consensus 2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~-~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-- 77 (258)
||.+.+.... .+..|+..+|.|.+.++ | ...+.|.|+|+.+. ........ ...+++..
T Consensus 1 pP~v~v~~~~-~~~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~-~~~~~~~~----------------p~~d~tyq~~ 62 (93)
T cd05770 1 TPKVQVYSRF-PAENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP-KVEQSDLS----------------FSKDWTFYLL 62 (93)
T ss_pred CCEEEEEecC-CCcCCCceEEEEEEEEEeCCCCEEEEEECCEECC-CcEECcEE----------------ECCCCCEEEE
Confidence 4666443222 34567788999999995 3 44899999999876 42111111 11233332
Q ss_pred -EeecccCCCceEEEEEEEeCCc
Q psy14532 78 -IENVQKDHDRGVYWCTATNKQG 99 (258)
Q Consensus 78 -i~~~~~~~d~G~Y~C~~~~~~~ 99 (258)
...+ ...+...|+|.+.+...
T Consensus 63 s~l~~-~~~~~~~ysC~V~H~~l 84 (93)
T cd05770 63 KSTEF-TPTKGDEYACRVRHNSM 84 (93)
T ss_pred EEEEE-CCCCCCeEEEEEEECCC
Confidence 2334 56678899999988643
No 301
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=98.30 E-value=1.5e-05 Score=49.43 Aligned_cols=44 Identities=20% Similarity=0.543 Sum_probs=30.6
Q ss_pred CCcceeeceeeeecCCCceEEEEEEeec-C-CCeEEEeeCCEeCcCC
Q psy14532 2 HPQLIYKFIQQTLQPGPPVSLKCIATGN-P-TPHISWKLDGYPLAGD 46 (258)
Q Consensus 2 ~p~~~~~~~~~~~~~g~~v~l~C~~~~~-~-~~~v~W~~~~~~~~~~ 46 (258)
||++.+-... ....|+.++|.|.+.++ | ...++|.++|..+...
T Consensus 1 ~P~V~v~~~~-~~~~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~ 46 (94)
T cd05767 1 PPEVTVFSLK-PVELGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDG 46 (94)
T ss_pred CCEEEEEeCC-cccCCCCeEEEEEEEEEECCcCEEEEEECCeEccCc
Confidence 5666443322 24457778999999995 4 3589999999887543
No 302
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=98.30 E-value=1.4e-05 Score=48.50 Aligned_cols=69 Identities=16% Similarity=0.373 Sum_probs=42.6
Q ss_pred eEEEEEEeec-CCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEEEEEEeCC
Q psy14532 20 VSLKCIATGN-PTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQ 98 (258)
Q Consensus 20 v~l~C~~~~~-~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~~~~~~ 98 (258)
+.|+|.+.+. |...|.|+++|+.+..... .....+ ..........|.+... ..+|...|+|.+.+..
T Consensus 2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~-~~~~~~----------~~~t~~~~s~l~~~~~-~~d~g~~~tC~v~h~~ 69 (83)
T cd07705 2 AKLRCTSSGSKPAANIKWRKGDQELEGAPT-SVLEDG----------NGKTFTVSSSVEFQVT-REDDGAEITCSVGHES 69 (83)
T ss_pred EEEEEEecCccCCCEeEEEECCEECCCcce-eEEECC----------CCCEEEEEEEEEEEec-chhCCCEEEEEEECcc
Confidence 6899999885 7889999999988765311 000000 0001111233555444 5667789999999876
Q ss_pred cc
Q psy14532 99 GR 100 (258)
Q Consensus 99 ~~ 100 (258)
..
T Consensus 70 l~ 71 (83)
T cd07705 70 LH 71 (83)
T ss_pred cC
Confidence 43
No 303
>smart00406 IGv Immunoglobulin V-Type.
Probab=98.28 E-value=2.3e-06 Score=51.73 Aligned_cols=74 Identities=22% Similarity=0.290 Sum_probs=39.1
Q ss_pred ceEEEEEEeecCC--CeEEEeeCCEeCcCCccccceecccceeeccccccceeee-----eCCcEEEeecccCCCceEEE
Q psy14532 19 PVSLKCIATGNPT--PHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVF-----PNGTLLIENVQKDHDRGVYW 91 (258)
Q Consensus 19 ~v~l~C~~~~~~~--~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~i~~~~~~~d~G~Y~ 91 (258)
+|+|.|.+..... ..+.|++......... ...............+..|.... ...+|.|.++ +.+|+|.|.
T Consensus 1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~-~~~D~G~Y~ 78 (81)
T smart00406 1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEW-LGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNL-RVEDTGTYY 78 (81)
T ss_pred CEEEEEEEeccccceeEEEEEEeCCCCCeEE-EEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCC-CHHHCEEEE
Confidence 4789999876443 3799998532100000 00000001111111222232222 2356999999 999999999
Q ss_pred EEE
Q psy14532 92 CTA 94 (258)
Q Consensus 92 C~~ 94 (258)
|.+
T Consensus 79 C~v 81 (81)
T smart00406 79 CAV 81 (81)
T ss_pred EcC
Confidence 963
No 304
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.28 E-value=6.8e-06 Score=51.75 Aligned_cols=87 Identities=16% Similarity=0.274 Sum_probs=49.9
Q ss_pred CCcceee-ceeeeecCCCceEEEEEEeec-C-CCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEE
Q psy14532 2 HPQLIYK-FIQQTLQPGPPVSLKCIATGN-P-TPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLI 78 (258)
Q Consensus 2 ~p~~~~~-~~~~~~~~g~~v~l~C~~~~~-~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i 78 (258)
||.+..- +.......++.++|.|.+.++ | ...|.|+++|+.+............ ..........|.+
T Consensus 1 pP~V~v~~p~~~~~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~----------~dgty~~~s~L~v 70 (100)
T cd07699 1 APSVTIFPPSSEELEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQ----------SDNTYSLSSYLTL 70 (100)
T ss_pred CCeEEEECCCHHHHccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEEC----------CCCCEEEEEEEEE
Confidence 5666443 333345578889999999985 4 4589999999987543111111000 0000111223444
Q ss_pred eecccCCCceEEEEEEEeCCc
Q psy14532 79 ENVQKDHDRGVYWCTATNKQG 99 (258)
Q Consensus 79 ~~~~~~~d~G~Y~C~~~~~~~ 99 (258)
..- ...+...|+|.+.+...
T Consensus 71 ~~~-~w~~~~~~sC~V~H~~l 90 (100)
T cd07699 71 TKS-DWNKHKVYTCEVTHEGL 90 (100)
T ss_pred cHH-HhCCCCeEEEEEEecCC
Confidence 433 34456899999988653
No 305
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.23 E-value=7.3e-06 Score=53.37 Aligned_cols=68 Identities=22% Similarity=0.458 Sum_probs=47.7
Q ss_pred CCCcceecCCcEEEEeeeCc--ccCceEEEEeCC--cccC-----------------CCcceEEec-----CCeEEEEec
Q psy14532 119 MGNVSAIAGEPLYLGCPVAG--YPIESITWQKGV--QQLP-----------------LNRRQKVFP-----NGTLLIENV 172 (258)
Q Consensus 119 ~~~~~~~~g~~~~l~C~~~~--~~~~~i~W~~~~--~~~~-----------------~~~~~~~~~-----~~~l~i~~~ 172 (258)
+..+.+.+|++++|.|.+.+ .+...+.|++.. .... ...++.+.. ...|.|.++
T Consensus 5 p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~ 84 (116)
T cd04982 5 QLSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQNL 84 (116)
T ss_pred CCeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEEC
Confidence 34566788999999999876 567789999842 2110 112333321 236899999
Q ss_pred ccCCCCcEEEEEEEe
Q psy14532 173 QKDHDRGVYWCTATN 187 (258)
Q Consensus 173 ~~~~~~g~y~C~~~~ 187 (258)
.. +|+|.|.|.+..
T Consensus 85 ~~-~Dsg~Y~C~~~~ 98 (116)
T cd04982 85 EK-EDSATYYCAYWE 98 (116)
T ss_pred CH-HHCEEEEEEEec
Confidence 98 999999999864
No 306
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.23 E-value=1.1e-05 Score=50.67 Aligned_cols=64 Identities=19% Similarity=0.315 Sum_probs=43.7
Q ss_pred ceecCCcEEEEeeeCcc--cCceEEEEeCCc--ccC------------CCcceEEecC---CeEEEEecccCCCCcEEEE
Q psy14532 123 SAIAGEPLYLGCPVAGY--PIESITWQKGVQ--QLP------------LNRRQKVFPN---GTLLIENVQKDHDRGVYWC 183 (258)
Q Consensus 123 ~~~~g~~~~l~C~~~~~--~~~~i~W~~~~~--~~~------------~~~~~~~~~~---~~l~i~~~~~~~~~g~y~C 183 (258)
.+.+|++++|.|...+. ....+.|++... ... ...+.....+ ..|.|.+++. +|+|.|.|
T Consensus 2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~-~Dsg~Y~C 80 (98)
T cd04984 2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQT-EDEADYYC 80 (98)
T ss_pred ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCCh-hhCEEEEE
Confidence 46789999999998664 455799998432 111 0112222222 2589999997 99999999
Q ss_pred EEEe
Q psy14532 184 TATN 187 (258)
Q Consensus 184 ~~~~ 187 (258)
.+.+
T Consensus 81 ~~~~ 84 (98)
T cd04984 81 QVWD 84 (98)
T ss_pred EEcc
Confidence 9875
No 307
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=98.22 E-value=2.7e-05 Score=48.38 Aligned_cols=73 Identities=25% Similarity=0.406 Sum_probs=46.1
Q ss_pred CcEEEEeeeCcc-cCceEEEEeCCc----cc-------------CCCcceEE----ecCCeEEEEecccCCCCcEEEEEE
Q psy14532 128 EPLYLGCPVAGY-PIESITWQKGVQ----QL-------------PLNRRQKV----FPNGTLLIENVQKDHDRGVYWCTA 185 (258)
Q Consensus 128 ~~~~l~C~~~~~-~~~~i~W~~~~~----~~-------------~~~~~~~~----~~~~~l~i~~~~~~~~~g~y~C~~ 185 (258)
++++|.|..... ....|+|.+... .+ ....+... ..+.+|.|.+++. +|+|.|+|.+
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~-~D~G~Y~C~v 79 (96)
T cd05887 1 KNVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGF-SDIGVYICKA 79 (96)
T ss_pred CCEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCc-cccEEEEEEE
Confidence 368899987642 334899987421 11 01112222 2356899999997 9999999998
Q ss_pred EeCCCCCccceEEEEe
Q psy14532 186 TNKQGRSSSQNVHISV 201 (258)
Q Consensus 186 ~~~~~~~~~~~~~l~v 201 (258)
.....-..+..+.|.|
T Consensus 80 ~tfP~G~~~~~~~l~~ 95 (96)
T cd05887 80 VTFPLGNTQSSTTVTV 95 (96)
T ss_pred EeCCCCCeeEEEEEEE
Confidence 7654324556666655
No 308
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=98.21 E-value=1.9e-05 Score=54.22 Aligned_cols=84 Identities=21% Similarity=0.399 Sum_probs=58.7
Q ss_pred CcceecCCcEEEEeeeC-cccCceEEEEeCCcccC------------CCcceEE----ecCCeEEEEecccCCCCcEEEE
Q psy14532 121 NVSAIAGEPLYLGCPVA-GYPIESITWQKGVQQLP------------LNRRQKV----FPNGTLLIENVQKDHDRGVYWC 183 (258)
Q Consensus 121 ~~~~~~g~~~~l~C~~~-~~~~~~i~W~~~~~~~~------------~~~~~~~----~~~~~l~i~~~~~~~~~g~y~C 183 (258)
...+.+|+++.|.|... +...+.++|.|..+.+. ..++..+ ..+..+.|.+++. +|+|.|.|
T Consensus 24 ~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~-sDeGcY~C 102 (189)
T PHA02987 24 KITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSL-KDNGCYTC 102 (189)
T ss_pred EEEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCCh-hhCeEEEE
Confidence 45678999999999984 55677899998643221 1122221 1345799999997 99999999
Q ss_pred EEEeCC-CCCccceEEEEeecCC
Q psy14532 184 TATNKQ-GRSSSQNVHISVTVPP 205 (258)
Q Consensus 184 ~~~~~~-~~~~~~~~~l~v~~~p 205 (258)
.+.... |...+....|.|....
T Consensus 103 ~F~tfp~G~~~~gt~CLtVt~~~ 125 (189)
T PHA02987 103 IFNTLLSKNNEKGVVCLNVTTDS 125 (189)
T ss_pred EEEecCCCCCceeEEEEEEEchh
Confidence 987654 4356677778887644
No 309
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=98.18 E-value=4.3e-05 Score=47.45 Aligned_cols=70 Identities=14% Similarity=0.129 Sum_probs=43.4
Q ss_pred ecCCCceEEEEEEeec-CC-CeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEE---EeecccCCCce
Q psy14532 14 LQPGPPVSLKCIATGN-PT-PHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLL---IENVQKDHDRG 88 (258)
Q Consensus 14 ~~~g~~v~l~C~~~~~-~~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---i~~~~~~~d~G 88 (258)
+..|+.++|.|.+.++ |. ..+.|+++|+.+.......... ...+++.. ...+ ...+..
T Consensus 11 ~~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~----------------~~~dgTy~~~s~L~~-~~~~~~ 73 (94)
T cd05766 11 GSLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELI----------------PNGDWTYQILVMLET-TPSRGD 73 (94)
T ss_pred ccCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceE----------------ECCCCcEEEEEEEEE-cCCCCC
Confidence 3578999999999985 43 3899999998876531111100 01122221 2234 445677
Q ss_pred EEEEEEEeCCcc
Q psy14532 89 VYWCTATNKQGR 100 (258)
Q Consensus 89 ~Y~C~~~~~~~~ 100 (258)
.|+|.+.+....
T Consensus 74 ~ysC~V~H~~l~ 85 (94)
T cd05766 74 TYTCVVEHSSLQ 85 (94)
T ss_pred EEEEEEEeCCCC
Confidence 999999987643
No 310
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=98.18 E-value=1.9e-05 Score=50.84 Aligned_cols=91 Identities=18% Similarity=0.352 Sum_probs=51.7
Q ss_pred CCCcce-eeceeeeecCCCceEEEEEEeec-CC-CeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEE
Q psy14532 1 SHPQLI-YKFIQQTLQPGPPVSLKCIATGN-PT-PHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLL 77 (258)
Q Consensus 1 ~~p~~~-~~~~~~~~~~g~~v~l~C~~~~~-~~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 77 (258)
++|.+. ..+....+.+++.++|.|.+.++ |. ..|.|+|++..+..+.......... +.........|.
T Consensus 1 ~~P~V~v~~ps~~e~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~---------~~gTYs~~S~L~ 71 (115)
T cd05769 1 TPPTVAIFPPSEAEIRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRE---------NTSTYSISSRLR 71 (115)
T ss_pred CCCEEEEECcChHHhccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecC---------CCCeEEEEEEEE
Confidence 467764 34444445577889999999985 44 4899999998876542111111100 000111122344
Q ss_pred EeecccCCC-ceEEEEEEEeCCcce
Q psy14532 78 IENVQKDHD-RGVYWCTATNKQGRS 101 (258)
Q Consensus 78 i~~~~~~~d-~G~Y~C~~~~~~~~~ 101 (258)
|... ...+ ...|+|.+.+.....
T Consensus 72 v~~~-~w~~~~~~ytC~V~H~g~~~ 95 (115)
T cd05769 72 VSAT-EWFNPRNTFTCIVQFYGGTD 95 (115)
T ss_pred EChH-HhccCCCeEEEEEEEeCCcc
Confidence 4433 3323 579999999875433
No 311
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=98.17 E-value=5.7e-05 Score=48.42 Aligned_cols=35 Identities=29% Similarity=0.620 Sum_probs=27.8
Q ss_pred eeeecCCCceEEEEEEeec-C-CCeEEEeeCCEeCcC
Q psy14532 11 QQTLQPGPPVSLKCIATGN-P-TPHISWKLDGYPLAG 45 (258)
Q Consensus 11 ~~~~~~g~~v~l~C~~~~~-~-~~~v~W~~~~~~~~~ 45 (258)
...+..|+.++|.|.+.++ | ...++|+|||+.+..
T Consensus 15 ~~~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~ 51 (111)
T cd05772 15 SGRANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSA 51 (111)
T ss_pred hhccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECcc
Confidence 3445678899999999985 5 358999999998754
No 312
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=98.17 E-value=1.7e-05 Score=48.94 Aligned_cols=85 Identities=21% Similarity=0.385 Sum_probs=47.3
Q ss_pred CcceeeceeeeecCCCceEEEEEEee-cCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeec
Q psy14532 3 PQLIYKFIQQTLQPGPPVSLKCIATG-NPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENV 81 (258)
Q Consensus 3 p~~~~~~~~~~~~~g~~v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~ 81 (258)
|.|.......... |+.+.|.|.+.+ .|.+.+.|+.++..+..... ...... .........+|.+..-
T Consensus 1 p~I~~~~~~~~~~-~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~-~~~~~~----------~~~~~~~~S~l~~~~~ 68 (89)
T PF08205_consen 1 PEITPNPSLLEGE-GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNT-TQSSSP----------DNGLFTVSSTLTLTPT 68 (89)
T ss_dssp EEEEEECSEEESS-TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEE-EEEEET----------TTTTEEEEEEEEEETT
T ss_pred CEeeCCCeeEccc-ceEEEEEEEeCCeECCeEEEEEECCCceeeeee-eeeecc----------CCCcceEEEEEEEEcC
Confidence 4555554333333 889999998754 78899999998766511100 000000 0001111224555444
Q ss_pred ccCCCceEEEEEEEeCCcc
Q psy14532 82 QKDHDRGVYWCTATNKQGR 100 (258)
Q Consensus 82 ~~~~d~G~Y~C~~~~~~~~ 100 (258)
..++...++|.+.+....
T Consensus 69 -~~~~~~~~~C~~~~~~~~ 86 (89)
T PF08205_consen 69 -REDHGKTLTCRASHPALS 86 (89)
T ss_dssp -GGGTTEEEEEEEEETTCC
T ss_pred -hHHCCeEEEEEEECCccC
Confidence 556778999999987643
No 313
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=98.17 E-value=2.3e-05 Score=49.13 Aligned_cols=74 Identities=26% Similarity=0.385 Sum_probs=46.8
Q ss_pred CCcEEEEeeeCccc-CceEEEEeCCccc-----------------CCCcceEE----ecCCeEEEEecccCCCCcEEEEE
Q psy14532 127 GEPLYLGCPVAGYP-IESITWQKGVQQL-----------------PLNRRQKV----FPNGTLLIENVQKDHDRGVYWCT 184 (258)
Q Consensus 127 g~~~~l~C~~~~~~-~~~i~W~~~~~~~-----------------~~~~~~~~----~~~~~l~i~~~~~~~~~g~y~C~ 184 (258)
|++++|.|...... .-.+.|++..... ....+... ..+.+|.|.+++. +|+|.|.|.
T Consensus 1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~-~D~G~Y~C~ 79 (97)
T cd05846 1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTL-EDEGCYKCI 79 (97)
T ss_pred CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCce-eeeEEEEEE
Confidence 68899999865432 2369998843210 00111111 1234699999998 999999999
Q ss_pred EEeCCCCCccceEEEEe
Q psy14532 185 ATNKQGRSSSQNVHISV 201 (258)
Q Consensus 185 ~~~~~~~~~~~~~~l~v 201 (258)
+........+..+.|.|
T Consensus 80 ~~~~p~g~~~~~~~L~v 96 (97)
T cd05846 80 FNTFPDGSKSGTMCLTV 96 (97)
T ss_pred EEeCCCCCeeeEEEEEE
Confidence 88654334556666665
No 314
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.17 E-value=1.1e-05 Score=46.97 Aligned_cols=66 Identities=36% Similarity=0.610 Sum_probs=45.0
Q ss_pred eEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEEEEEEeCC
Q psy14532 20 VSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQ 98 (258)
Q Consensus 20 v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~~~~~~ 98 (258)
+.|.|.+.+.+...+.|++++......... ..............|.|.++ ...|.|.|.|.+.+..
T Consensus 1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~------------~~~~~~~~~~~~~~l~i~~~-~~~d~g~y~C~~~~~~ 66 (74)
T cd00096 1 VTLTCLASGPPPPTITWLKNGKPLPSSVLT------------RVRSSRGTSSGSSTLTISNV-TLEDSGTYTCVASNSA 66 (74)
T ss_pred CEEEEEecCCCCCcEEEEECCEECCCcccE------------EeccccCcceeEEEEEECcc-CcccCcEEEEEEecCc
Confidence 478999988677799999987665433110 00011112234557889999 8899999999998765
No 315
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=98.15 E-value=4.5e-06 Score=54.02 Aligned_cols=69 Identities=25% Similarity=0.417 Sum_probs=47.7
Q ss_pred CCCcceecCCcEEEEeeeC-cccCceEEEEeCCcc-----cC--------------CCcceEEecC-----CeEEEEecc
Q psy14532 119 MGNVSAIAGEPLYLGCPVA-GYPIESITWQKGVQQ-----LP--------------LNRRQKVFPN-----GTLLIENVQ 173 (258)
Q Consensus 119 ~~~~~~~~g~~~~l~C~~~-~~~~~~i~W~~~~~~-----~~--------------~~~~~~~~~~-----~~l~i~~~~ 173 (258)
+..+.+.+|+++.|.|... ......+.|++.... +. ...+..+..+ .+|.|.+++
T Consensus 8 ~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l~ 87 (114)
T PF07686_consen 8 PSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNLQ 87 (114)
T ss_dssp ESEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSES
T ss_pred CCeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCCC
Confidence 3456788999999999987 445568999984331 10 0111111111 259999999
Q ss_pred cCCCCcEEEEEEEeC
Q psy14532 174 KDHDRGVYWCTATNK 188 (258)
Q Consensus 174 ~~~~~g~y~C~~~~~ 188 (258)
. +|+|.|.|.+...
T Consensus 88 ~-~DsG~Y~C~v~~~ 101 (114)
T PF07686_consen 88 P-SDSGTYFCQVSTS 101 (114)
T ss_dssp G-GGEEEEEEEEEES
T ss_pred c-CcCEEEEEEEEEC
Confidence 7 9999999999986
No 316
>KOG1480|consensus
Probab=98.14 E-value=1.4e-06 Score=71.55 Aligned_cols=190 Identities=20% Similarity=0.293 Sum_probs=110.0
Q ss_pred CcceeeceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecc
Q psy14532 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQ 82 (258)
Q Consensus 3 p~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~ 82 (258)
|.|+..+.+..+..|.++.|.|.+... +++.+.-++.-+....+......+.. . .......++.|...
T Consensus 25 ~~~~~~p~~~yii~~~p~~l~c~a~~a--~~i~~kc~~~wv~~~~~~~~~~~d~t--s-------g~~~~~~si~Isr~- 92 (909)
T KOG1480|consen 25 PHFTTEPKSAYIIKNKPLRLQCKANPA--TQIRFKCNSEWVHQSRHEKLEGTDET--S-------GLGVREVSIDISRQ- 92 (909)
T ss_pred ceeeecCCccceecCCCccceecCCcc--cccccccChhhhcCccceeeeccCcc--c-------ceeEEeeeeeeehh-
Confidence 456778888889999999999987643 33333222222222111111000000 0 01111223444443
Q ss_pred cCCCc---eEEEEE--EEeCCcceeeceEEEEEec--CCeeccCCCcceecCCcEEEEeee-CcccCceEEEEeCCcccC
Q psy14532 83 KDHDR---GVYWCT--ATNKQGRSSSQNVHISVTG--APFVRPMGNVSAIAGEPLYLGCPV-AGYPIESITWQKGVQQLP 154 (258)
Q Consensus 83 ~~~d~---G~Y~C~--~~~~~~~~~~~~~~l~v~~--~~~~~~~~~~~~~~g~~~~l~C~~-~~~~~~~i~W~~~~~~~~ 154 (258)
..++. .-|.|+ +....|...+....+.+.+ +-+...+.-..+..+..+++.|.. .+.|...+.|++++..+.
T Consensus 93 ~v~~~~~~~d~~cQc~a~~~~g~~~s~~a~vr~ay~rk~f~~~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~ 172 (909)
T KOG1480|consen 93 QVETSGGPEDYWCQCVAWSDDGTVKSRKATVRIAYLRKHFEQSPVGQEVQEETTLQLPCRPPEGDPKAEVEWLKNEVVID 172 (909)
T ss_pred hhhcccCccceeeeeeeecCCCcchhhhHHHHHHHHHHhhccChhhheecccccccccccCcccchhhhhhccccCCCCC
Confidence 33332 246654 4444442221211111111 112222333456677788888876 678888999999998887
Q ss_pred CCcceEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEeecCC
Q psy14532 155 LNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPP 205 (258)
Q Consensus 155 ~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p 205 (258)
...+........+.+.++.. .|.|+|+|++.|..++.....+.+.++...
T Consensus 173 pd~n~~~~~d~~li~~~arl-sd~~nytc~a~ni~~~r~~~~~~v~vyv~g 222 (909)
T KOG1480|consen 173 PDANVIRASDHNLIISQARL-SDSGNYTCEATNIVAKRKSDPATVQVYVNG 222 (909)
T ss_pred ccccchhhhcCCccccchhh-hhcccceeeeehhhccccccceEEEEEEcC
Confidence 76555556677888988885 999999999999988777777777776543
No 317
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=98.14 E-value=3.5e-05 Score=45.76 Aligned_cols=69 Identities=16% Similarity=0.322 Sum_probs=39.6
Q ss_pred ceEEEEEEeec-CC-CeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEEEEEEe
Q psy14532 19 PVSLKCIATGN-PT-PHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATN 96 (258)
Q Consensus 19 ~v~l~C~~~~~-~~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~~~~ 96 (258)
.++|.|.+.++ |. ..+.|+|+|+++............ ..........|.|... ...+...|+|.+.+
T Consensus 1 ~~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~----------~~gt~~~~s~L~v~~~-~~~~~~~~tC~V~H 69 (75)
T smart00407 1 KATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKN----------SDGTYFLSSYLTVSAS-TWESGDTYTCQVTH 69 (75)
T ss_pred CeEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEEC----------CCCCEEEEEEEEEccc-cCCCCCEEEEEEEE
Confidence 47899999986 44 589999999875433111100000 0001111223555444 45677899999987
Q ss_pred CC
Q psy14532 97 KQ 98 (258)
Q Consensus 97 ~~ 98 (258)
..
T Consensus 70 ~~ 71 (75)
T smart00407 70 EG 71 (75)
T ss_pred cC
Confidence 64
No 318
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=98.14 E-value=3e-05 Score=48.18 Aligned_cols=65 Identities=23% Similarity=0.286 Sum_probs=42.6
Q ss_pred ecCCcEEEEeeeCc-ccCc-eEEEEeCCcccCCC---cceEEecCCeEEEE---ecccCCCCcEEEEEEEeCCC
Q psy14532 125 IAGEPLYLGCPVAG-YPIE-SITWQKGVQQLPLN---RRQKVFPNGTLLIE---NVQKDHDRGVYWCTATNKQG 190 (258)
Q Consensus 125 ~~g~~~~l~C~~~~-~~~~-~i~W~~~~~~~~~~---~~~~~~~~~~l~i~---~~~~~~~~g~y~C~~~~~~~ 190 (258)
..|+.++|.|.+.| +|.. .++|++++..+... .......++++.+. .+.. .+...|+|.+.+...
T Consensus 12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~~~-~~~~~ysC~V~H~~l 84 (94)
T cd05766 12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLETTP-SRGDTYTCVVEHSSL 84 (94)
T ss_pred cCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEEcC-CCCCEEEEEEEeCCC
Confidence 35788999999988 5544 89999999876543 11122233443332 2333 566699999998753
No 319
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=98.11 E-value=6.6e-05 Score=47.03 Aligned_cols=36 Identities=25% Similarity=0.595 Sum_probs=28.7
Q ss_pred CCeEEEEecccCCCCcEEEEEEEeC-CCCCccceEEEEe
Q psy14532 164 NGTLLIENVQKDHDRGVYWCTATNK-QGRSSSQNVHISV 201 (258)
Q Consensus 164 ~~~l~i~~~~~~~~~g~y~C~~~~~-~~~~~~~~~~l~v 201 (258)
+.+|.|.+++. +|.|.|+|.+.+. .| ..+..+.|.|
T Consensus 62 daSi~i~nl~~-~D~G~Y~C~v~t~P~g-~~~~~~~L~V 98 (99)
T cd05886 62 DGTISLSRLEL-EDEGVYICEFATFPTG-NRESQLNLTV 98 (99)
T ss_pred cceEEEcCCcc-ccCEEEEEEEEeCCCC-CeEEEEEEEE
Confidence 36899999997 9999999999994 45 4556666665
No 320
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=98.10 E-value=6.7e-06 Score=46.13 Aligned_cols=52 Identities=31% Similarity=0.548 Sum_probs=36.4
Q ss_pred cCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEEEEE
Q psy14532 15 QPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTA 94 (258)
Q Consensus 15 ~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~~ 94 (258)
..|.+|+|+|+.... .+.|+++++.+... +..+.+.+- . ++.|.|+|.+
T Consensus 5 isGTtVtlTCP~~~~---~i~W~~n~~~~~g~--------------------------~~~~~~~~~-~-e~~G~Y~C~~ 53 (65)
T cd07692 5 ISGTTVTVTCPLSGD---DIKWKKNDQVSQGS--------------------------DEKYLSLNH-F-SSSGYYHCTA 53 (65)
T ss_pred EeccEEEEECCCCCC---CceEEeCCccCCCC--------------------------CceEEeecc-C-CCCceEEEEe
Confidence 469999999976532 39999998554432 224555566 5 7899999998
Q ss_pred EeC
Q psy14532 95 TNK 97 (258)
Q Consensus 95 ~~~ 97 (258)
.+.
T Consensus 54 ~~~ 56 (65)
T cd07692 54 DNA 56 (65)
T ss_pred CCC
Confidence 643
No 321
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=98.08 E-value=2.3e-05 Score=50.07 Aligned_cols=74 Identities=22% Similarity=0.350 Sum_probs=48.2
Q ss_pred CCcEEEEeeeCccc-------CceEEEEeCC--ccc-----------------CCCcceEEec------CCeEEEEeccc
Q psy14532 127 GEPLYLGCPVAGYP-------IESITWQKGV--QQL-----------------PLNRRQKVFP------NGTLLIENVQK 174 (258)
Q Consensus 127 g~~~~l~C~~~~~~-------~~~i~W~~~~--~~~-----------------~~~~~~~~~~------~~~l~i~~~~~ 174 (258)
|++++|.|...-.| .+.|.|.+.. ... ....+..+.. +.+|.|.+++.
T Consensus 2 ~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~~ 81 (110)
T cd05902 2 SSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLRY 81 (110)
T ss_pred CCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCCH
Confidence 67899999864221 3689998741 100 1112333322 34799999998
Q ss_pred CCCCcEEEEEEEeCCCCCccceEEEEee
Q psy14532 175 DHDRGVYWCTATNKQGRSSSQNVHISVT 202 (258)
Q Consensus 175 ~~~~g~y~C~~~~~~~~~~~~~~~l~v~ 202 (258)
+|+|.|.|.+..... .....+.|.|.
T Consensus 82 -~D~G~Y~C~v~~g~~-~~~~~v~L~V~ 107 (110)
T cd05902 82 -SDSGTYRCEVVLGIN-DEQDTVPLEVT 107 (110)
T ss_pred -HHCEEEEEEEEECCc-ccEEEEEEEEE
Confidence 999999999998542 45566666664
No 322
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=98.07 E-value=4.8e-05 Score=47.99 Aligned_cols=71 Identities=18% Similarity=0.366 Sum_probs=44.8
Q ss_pred cEEEEeeeCccc---CceEEEEeCCcc-----c---C----------CCcceEEe-----cCCeEEEEecccCCCCcEEE
Q psy14532 129 PLYLGCPVAGYP---IESITWQKGVQQ-----L---P----------LNRRQKVF-----PNGTLLIENVQKDHDRGVYW 182 (258)
Q Consensus 129 ~~~l~C~~~~~~---~~~i~W~~~~~~-----~---~----------~~~~~~~~-----~~~~l~i~~~~~~~~~g~y~ 182 (258)
++.|.|...... ...|.|++.... + . ...+..+. .+.+|.|.+++. +|+|.|.
T Consensus 2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~-sD~GtY~ 80 (100)
T cd05888 2 DTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQ-ADEGKYK 80 (100)
T ss_pred CEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCcc-ccceEEE
Confidence 578999875432 337899884211 0 0 11222332 245799999998 9999999
Q ss_pred EEEEeC-CCCCccceEEEEe
Q psy14532 183 CTATNK-QGRSSSQNVHISV 201 (258)
Q Consensus 183 C~~~~~-~~~~~~~~~~l~v 201 (258)
|.+.+. .| ..+..+.|.|
T Consensus 81 C~v~~~p~g-~~~~~~~L~V 99 (100)
T cd05888 81 CRVITFPAG-NFEAELVLTV 99 (100)
T ss_pred EEEEeCCCC-CeeeEEEEEe
Confidence 999974 44 3455566654
No 323
>PHA03270 envelope glycoprotein C; Provisional
Probab=98.06 E-value=0.0031 Score=49.15 Aligned_cols=166 Identities=18% Similarity=0.278 Sum_probs=98.7
Q ss_pred cEEEeecccCCCceEEEEEEEeCCcc-eeeceEEEEEecCCeeccCCCcceecCCcEEEEeeeCc-ccC--ceEEEEeCC
Q psy14532 75 TLLIENVQKDHDRGVYWCTATNKQGR-SSSQNVHISVTGAPFVRPMGNVSAIAGEPLYLGCPVAG-YPI--ESITWQKGV 150 (258)
Q Consensus 75 ~l~i~~~~~~~d~G~Y~C~~~~~~~~-~~~~~~~l~v~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~--~~i~W~~~~ 150 (258)
.|.|..+ +...+|.|+-...+..+. ...+.+.|..+..|.+... ...+..|+...-.|.+.. +|+ ..+.|++|+
T Consensus 183 ~L~I~sl-t~aTeGvY~Wr~~~~~~~~~~~~~VtV~~yr~Psvsv~-~~PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf~ng 260 (466)
T PHA03270 183 RLVIQEL-TLATQGMYYWARGPADRPHRYGTWTRVRMFRRPSLSIR-PHAVLEGEPFGATCVAANYYPGDRAAFRWFEGG 260 (466)
T ss_pred eEEEEEc-ccccceEEEEEEecCCCceeeeeEEEEEEecCCccccc-CCccccCCCceEEEEeeeecCCCceEEEEEeCC
Confidence 4889999 999999999998775542 2335566777766664442 345778999999999866 453 389999999
Q ss_pred cccCCCc----ceEEecCCeEEEEecccCCC-----CcEEEEEEEeCCCCCc----cceEEEEeecCCccccCCCCCccC
Q psy14532 151 QQLPLNR----RQKVFPNGTLLIENVQKDHD-----RGVYWCTATNKQGRSS----SQNVHISVTVPPKIAPFEFQPDLH 217 (258)
Q Consensus 151 ~~~~~~~----~~~~~~~~~l~i~~~~~~~~-----~g~y~C~~~~~~~~~~----~~~~~l~v~~~p~~~~~~~~~~~~ 217 (258)
..+.... ......++...++-++.+.+ .-..+|++........ +....-.|+.+|.+.+. +.
T Consensus 261 ~~V~~~~~i~~~~~~~~dGfs~vStvtsea~~~~~~PPsLrC~v~W~rd~vS~sR~nAa~~P~VY~~P~Isv~-----F~ 335 (466)
T PHA03270 261 DEVFAPERVRTRVDAQRDGFSATSTLTSEARAGLAPPRNLTCEFTWHRDSVSFSRRNATGAPTVLPRPTIEME-----FG 335 (466)
T ss_pred ccccCcceeeeeeEecCCCeeEEEEEeccccccCCCCCCceEEEEEccCCccceeecccccCccccCCeEEEE-----Ee
Confidence 8774321 12222333223333333122 2378999987653221 22222334444443332 12
Q ss_pred CCCeeeEEEEeccCCC-CceeEEEECCEecccccc
Q psy14532 218 SGDRAGVQCLVTKGDP-PLTISWLKNGLPILSAMG 251 (258)
Q Consensus 218 ~g~~~~l~C~~~~~~p-~~~~~W~~~g~~l~~~~~ 251 (258)
++ ...|.+ ..-| ...+.|+-++......+.
T Consensus 336 -dG--~AVCtA-~CVPegV~l~W~V~D~~~pa~~~ 366 (466)
T PHA03270 336 -GD--EAVCTA-ACVPEGVTLAWLLGADPAPAEKA 366 (466)
T ss_pred -CC--EEEEec-cccCCCCEEEEEecCCCCCCccc
Confidence 22 345776 3333 478999987766655543
No 324
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=98.05 E-value=3.5e-05 Score=49.49 Aligned_cols=37 Identities=24% Similarity=0.506 Sum_probs=29.5
Q ss_pred CCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEee
Q psy14532 164 NGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVT 202 (258)
Q Consensus 164 ~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~ 202 (258)
+.+|.|.+++. .|+|.|.|++.+... .....+.|.|.
T Consensus 78 ~asL~i~~v~~-sD~G~Y~C~V~~g~~-~~~~~v~L~V~ 114 (117)
T cd05901 78 DASLTIVKLRA-SDAGVYRCEVMHGIE-DTQDTVSLDVS 114 (117)
T ss_pred ceEEEEccccc-ccCEEEEEEEEECCc-ccEEEEEEEEE
Confidence 45799999997 999999999998754 45566667664
No 325
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=98.01 E-value=9.1e-05 Score=45.86 Aligned_cols=71 Identities=20% Similarity=0.340 Sum_probs=45.5
Q ss_pred cCCCcceecCCcEEE-Eeee-CcccCceEEEEeCCcccCCCcceEEecCCe------EEEEecccCCCCcEEEEEEEeCC
Q psy14532 118 PMGNVSAIAGEPLYL-GCPV-AGYPIESITWQKGVQQLPLNRRQKVFPNGT------LLIENVQKDHDRGVYWCTATNKQ 189 (258)
Q Consensus 118 ~~~~~~~~~g~~~~l-~C~~-~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~------l~i~~~~~~~~~g~y~C~~~~~~ 189 (258)
......+.+|+.+.+ .|.+ .++|.+.|+|+.+..... ........+++ +.+..... +|+..++|.+.+..
T Consensus 7 ~~~~~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~-~~~~~~~~ngT~TV~S~~~l~p~r~-d~G~~vtC~V~H~a 84 (97)
T cd07704 7 PGPSLLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTS-ESHSQEHPNGTTTVTSEYIWVPSRH-ANGHPLTCVVSHPA 84 (97)
T ss_pred CCCeeEeecCcceeEEEEEccCCccCCEeEEeCCCCCcc-ceeeecCCCCCEEEEEEEEEEeCHH-HCCcEEEEEEeCcc
Confidence 344456678888888 8877 568999999998643322 12222233343 44444443 67779999999875
Q ss_pred C
Q psy14532 190 G 190 (258)
Q Consensus 190 ~ 190 (258)
-
T Consensus 85 l 85 (97)
T cd07704 85 L 85 (97)
T ss_pred c
Confidence 3
No 326
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=98.01 E-value=1.3e-05 Score=49.39 Aligned_cols=63 Identities=24% Similarity=0.391 Sum_probs=40.1
Q ss_pred CCcEEEEeeeC-cccCceEEEEeCCcccCCCcc--eEEecC------CeEEEEecccCCCCcEEEEEEEeCCC
Q psy14532 127 GEPLYLGCPVA-GYPIESITWQKGVQQLPLNRR--QKVFPN------GTLLIENVQKDHDRGVYWCTATNKQG 190 (258)
Q Consensus 127 g~~~~l~C~~~-~~~~~~i~W~~~~~~~~~~~~--~~~~~~------~~l~i~~~~~~~~~g~y~C~~~~~~~ 190 (258)
|+.+.+.|.+. ++|.+.|+|+.++..+..... .....+ ..|.+... ++++...++|.+.+...
T Consensus 14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~-~~~~~~~~~C~~~~~~~ 85 (89)
T PF08205_consen 14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPT-REDHGKTLTCRASHPAL 85 (89)
T ss_dssp TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETT-GGGTTEEEEEEEEETTC
T ss_pred ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcC-hHHCCeEEEEEEECCcc
Confidence 67999999874 589999999998877621111 111111 23444433 33567799999998753
No 327
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=98.00 E-value=4.4e-05 Score=47.98 Aligned_cols=67 Identities=21% Similarity=0.341 Sum_probs=45.6
Q ss_pred cceecCCcEEEEeeeCc-ccCceEEEEeCCccc-------------CCCcceEEec-----CCeEEEEecccCCCCcEEE
Q psy14532 122 VSAIAGEPLYLGCPVAG-YPIESITWQKGVQQL-------------PLNRRQKVFP-----NGTLLIENVQKDHDRGVYW 182 (258)
Q Consensus 122 ~~~~~g~~~~l~C~~~~-~~~~~i~W~~~~~~~-------------~~~~~~~~~~-----~~~l~i~~~~~~~~~g~y~ 182 (258)
+.+.+|++++|.|.... .....+.|++....- ....+..+.. ...|.|.+++. +|+|.|.
T Consensus 2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~-~DsG~Y~ 80 (98)
T cd05716 2 VTGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRK-EDAGWYW 80 (98)
T ss_pred EEEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCH-HHCEEEE
Confidence 35678999999998765 345678999854211 1112233321 12589999997 9999999
Q ss_pred EEEEeCC
Q psy14532 183 CTATNKQ 189 (258)
Q Consensus 183 C~~~~~~ 189 (258)
|.+....
T Consensus 81 C~~~~~~ 87 (98)
T cd05716 81 CGVGDDG 87 (98)
T ss_pred EEcccCC
Confidence 9987653
No 328
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=98.00 E-value=7.1e-05 Score=46.44 Aligned_cols=80 Identities=15% Similarity=0.206 Sum_probs=44.1
Q ss_pred ceeeeecCCCceEEEEEEeec-CC-CeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCC
Q psy14532 9 FIQQTLQPGPPVSLKCIATGN-PT-PHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHD 86 (258)
Q Consensus 9 ~~~~~~~~g~~v~l~C~~~~~-~~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d 86 (258)
|.......++.++|.|.+.++ |. ..|.|+++|..+............. .........|.+..- ...+
T Consensus 6 ps~~~~~~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~----------~~Ty~~~S~L~v~~~-~w~~ 74 (94)
T cd05847 6 SSCCDTGTSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEE----------GSTFSTTSELNVTQE-DWKS 74 (94)
T ss_pred cChHHcCCCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECC----------CCcEEEEEEEEEchH-HhcC
Confidence 333333456779999999985 43 5899999998764321111111100 001111223444433 3345
Q ss_pred ceEEEEEEEeCCc
Q psy14532 87 RGVYWCTATNKQG 99 (258)
Q Consensus 87 ~G~Y~C~~~~~~~ 99 (258)
...|+|.+.+...
T Consensus 75 ~~~ytC~V~H~~~ 87 (94)
T cd05847 75 GKTYTCKVTHQGT 87 (94)
T ss_pred CCeEEEEEEECCe
Confidence 6799999988654
No 329
>PHA03269 envelope glycoprotein C; Provisional
Probab=97.99 E-value=0.0015 Score=51.53 Aligned_cols=164 Identities=18% Similarity=0.272 Sum_probs=95.8
Q ss_pred cEEEeecccCCCceEEEEEEEeCCc--ceeeceEEEEEecCCeeccCCCcceecCCcEEEEeeeCc-ccC--ceEEEEeC
Q psy14532 75 TLLIENVQKDHDRGVYWCTATNKQG--RSSSQNVHISVTGAPFVRPMGNVSAIAGEPLYLGCPVAG-YPI--ESITWQKG 149 (258)
Q Consensus 75 ~l~i~~~~~~~d~G~Y~C~~~~~~~--~~~~~~~~l~v~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~--~~i~W~~~ 149 (258)
.|.|..+ +..++|.|.-++.+... ......+.|.++..|.+.. ....+.+|+.-.-.|.+.. +|+ ..+.|++|
T Consensus 290 pL~I~sl-taATeGvY~Wrv~~~~n~t~~~~~~VtV~~yr~PsVsV-~p~PVL~Ge~YkAtC~vA~YYPp~SvrlrWf~n 367 (566)
T PHA03269 290 SLHILSL-DASTEGTYIWRVIHTANKNVINEHHITVMSYKRPNITV-IGDPVLLGNPYAAYCKVNKYYPPHSVIVKWTSN 367 (566)
T ss_pred ceEEeec-ccccCceEEEEEecCCCCceeeeeEEEEEEecCCCccc-cCCccccCCCceEEEEeeeecCCCceEEEEEeC
Confidence 4899999 99999999877764332 2233667777777774443 3345789999999999976 453 37999999
Q ss_pred CcccCCC---cceEEecCCeEEEE-ecccCC------CCcEEEEEEEeCCCCCc----cceEEEEeecCCccccCCCCCc
Q psy14532 150 VQQLPLN---RRQKVFPNGTLLIE-NVQKDH------DRGVYWCTATNKQGRSS----SQNVHISVTVPPKIAPFEFQPD 215 (258)
Q Consensus 150 ~~~~~~~---~~~~~~~~~~l~i~-~~~~~~------~~g~y~C~~~~~~~~~~----~~~~~l~v~~~p~~~~~~~~~~ 215 (258)
+..+... .......+|.+... -++..+ ..-..+|.+........ +....-.|+.+|.+.+.
T Consensus 368 g~~V~~~~it~t~~~~~dGlFSrVSTLtlp~~~~~d~~PPsLrCeV~W~RDsVS~tRfnAaatP~VY~~PtISm~----- 442 (566)
T PHA03269 368 FGNIGKNFITDAIKENADGLFSSVSALHIPAQKNADYPPPAIQCNVLWIRDGVSHMKYSAAVTPDVYPFPNVSIE----- 442 (566)
T ss_pred CcccCccccccceeecCCCceEEEEEEeccCccccCCCCCCceEEEEEccCCchheecccccCCccccCCeEEEE-----
Confidence 8877632 22233344432221 111101 13357999987654222 12222334444443322
Q ss_pred cCCCCeeeEEEEeccCCCC--ceeEEEECCEecccc
Q psy14532 216 LHSGDRAGVQCLVTKGDPP--LTISWLKNGLPILSA 249 (258)
Q Consensus 216 ~~~g~~~~l~C~~~~~~p~--~~~~W~~~g~~l~~~ 249 (258)
...| ...|.+ ...|. ..+.|+-++....++
T Consensus 443 FedG---~AVCtA-~CVP~~~V~l~WlVgD~p~~~~ 474 (566)
T PHA03269 443 IIDG---HIVCLA-KCVPRGVVHFNWWINDIPIEHE 474 (566)
T ss_pred EeCC---EEEEec-ccccCCCceEEEEecCCCCCCc
Confidence 2223 456777 45543 589998766554443
No 330
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.98 E-value=5.7e-05 Score=47.68 Aligned_cols=38 Identities=24% Similarity=0.508 Sum_probs=27.8
Q ss_pred eceeeeecCCCceEEEEEEeec-CC-CeEEEeeCCEeCcC
Q psy14532 8 KFIQQTLQPGPPVSLKCIATGN-PT-PHISWKLDGYPLAG 45 (258)
Q Consensus 8 ~~~~~~~~~g~~v~l~C~~~~~-~~-~~v~W~~~~~~~~~ 45 (258)
.+....+..|+.++|.|.+.++ |. ..+.|+++|+.+..
T Consensus 7 ~p~~~~~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~ 46 (102)
T cd05768 7 PPPSEELSLQETATLTCLVKGFSPSDIFVKWLQNGQPLSK 46 (102)
T ss_pred CcChHHhCcCCceEEEEEEeeEeCCCCEEEEEECCEECCc
Confidence 3333344568899999999995 33 37899999988654
No 331
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=97.97 E-value=8.9e-05 Score=45.95 Aligned_cols=63 Identities=22% Similarity=0.316 Sum_probs=40.6
Q ss_pred cCCcEEEEeeeCc-cc-CceEEEEeCCcccCCCc---ceEEecCCeEEEE---ecccCCCCcEEEEEEEeCC
Q psy14532 126 AGEPLYLGCPVAG-YP-IESITWQKGVQQLPLNR---RQKVFPNGTLLIE---NVQKDHDRGVYWCTATNKQ 189 (258)
Q Consensus 126 ~g~~~~l~C~~~~-~~-~~~i~W~~~~~~~~~~~---~~~~~~~~~l~i~---~~~~~~~~g~y~C~~~~~~ 189 (258)
.++..+|.|.+.| +| ...++|.++|..+..+. ......++++.+. .+.. .+...|+|.+.+..
T Consensus 14 ~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v~~-~~~~~ytC~V~H~~ 84 (94)
T cd05767 14 LGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNFTP-EEGDIYSCIVEHWG 84 (94)
T ss_pred CCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEEEC-CCCCeEEEEEEeCC
Confidence 3566799999998 55 35889999998765431 1222334443332 2333 55669999999864
No 332
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=97.97 E-value=0.00013 Score=46.82 Aligned_cols=65 Identities=15% Similarity=0.309 Sum_probs=40.8
Q ss_pred ceecCCcEEEEeeeCc-ccC-ceEEEEeCCcccCCCcceE-EecC-Ce------EEEEecccCCCC-cEEEEEEEeCC
Q psy14532 123 SAIAGEPLYLGCPVAG-YPI-ESITWQKGVQQLPLNRRQK-VFPN-GT------LLIENVQKDHDR-GVYWCTATNKQ 189 (258)
Q Consensus 123 ~~~~g~~~~l~C~~~~-~~~-~~i~W~~~~~~~~~~~~~~-~~~~-~~------l~i~~~~~~~~~-g~y~C~~~~~~ 189 (258)
....|+.++|.|.+.+ +|. ..++|++||..+....... ...+ ++ |.+... . .|. ..|+|.+.+..
T Consensus 17 ~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~~~~p~~d~~ty~~~S~L~~~~~-~-~d~~~~ytC~V~H~~ 92 (111)
T cd05772 17 RANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQPNITPEGDSVSYNVTSTVQVKLT-E-DDVHSQVTCEVQHRT 92 (111)
T ss_pred ccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECcccccceeeCCCCCcEEEEEEEEEECc-c-ccccCceEEEEEeCC
Confidence 3456788999999988 564 5999999998875332111 1122 23 333322 2 343 36999999975
No 333
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=97.94 E-value=7e-05 Score=47.92 Aligned_cols=64 Identities=20% Similarity=0.372 Sum_probs=42.4
Q ss_pred ceecCCcEEEEeeeCcc-cCceEEEEeCCcc---c--C------C-----------CcceEE--ecC---CeEEEEeccc
Q psy14532 123 SAIAGEPLYLGCPVAGY-PIESITWQKGVQQ---L--P------L-----------NRRQKV--FPN---GTLLIENVQK 174 (258)
Q Consensus 123 ~~~~g~~~~l~C~~~~~-~~~~i~W~~~~~~---~--~------~-----------~~~~~~--~~~---~~l~i~~~~~ 174 (258)
.+.+|++++|.|...+. ....+.|++.... . . . ..+..+ ..+ ..|.|.++..
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~ 81 (107)
T cd07700 2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKP 81 (107)
T ss_pred EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCH
Confidence 46789999999998653 3457999984321 0 0 0 112221 111 2489999987
Q ss_pred CCCCcEEEEEEEe
Q psy14532 175 DHDRGVYWCTATN 187 (258)
Q Consensus 175 ~~~~g~y~C~~~~ 187 (258)
+|+|.|.|...+
T Consensus 82 -~Dsg~YyCa~~~ 93 (107)
T cd07700 82 -EDSGTYFCMTVG 93 (107)
T ss_pred -HHCEEEEEeEcC
Confidence 999999999753
No 334
>PHA02982 hypothetical protein; Provisional
Probab=97.94 E-value=0.0001 Score=51.23 Aligned_cols=136 Identities=13% Similarity=0.193 Sum_probs=75.3
Q ss_pred eeeeecCCCceEEEEEEee-cCCCeEEEeeCC-EeCcCCccccceecccceeecccccc---ceeeeeCCcEEEeecccC
Q psy14532 10 IQQTLQPGPPVSLKCIATG-NPTPHISWKLDG-YPLAGDRHENKNRIGEARVQQLPLNR---RQKVFPNGTLLIENVQKD 84 (258)
Q Consensus 10 ~~~~~~~g~~v~l~C~~~~-~~~~~v~W~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~i~~~~~~ 84 (258)
.++.+.+|++|.|.|.... .......|++++ .-+... ......+........++.. .+.....++|+|.++ ..
T Consensus 32 ~dv~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~-~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~-~i 109 (251)
T PHA02982 32 ADVNATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQE-ANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKP-DP 109 (251)
T ss_pred hhhhccCCCcEEEEecCCCcchhhhheeeCCCCeEEEee-ecCcceeccccccCCccceeEEEEEeccceeEEeccC-Cc
Confidence 4567889999999998543 233478899853 222211 0011111111111111111 122223567999999 99
Q ss_pred CCceEEEEEEEeCCcceeeceEEEEEecCCeeccCCCcceecCCcEEEEeeeCcccCceEEEEeCCc
Q psy14532 85 HDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQ 151 (258)
Q Consensus 85 ~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~ 151 (258)
+..|.|+|.+....+..+.....|.|+.......- ........+.|-+-....+-..|..+|.
T Consensus 110 ~N~GCYtc~~ks~~~k~E~c~kCl~V~~~~V~~~W----~e~nNeT~V~CyVgS~~~dvp~W~V~GV 172 (251)
T PHA02982 110 QNLGCFTCEAKDAEGKEETCEKCLEIQKEDILYVV----EEHNNETIITCFVGSKHGDVPRFIVAGI 172 (251)
T ss_pred ccCCceEEEEecCCCchheeheeeeEecceEEEEE----EecCCeEEEEEEEEeccCCCccEEEeeE
Confidence 99999999999877666544556666433221110 1123456788987544333237876654
No 335
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=97.93 E-value=6e-05 Score=44.73 Aligned_cols=59 Identities=24% Similarity=0.413 Sum_probs=37.4
Q ss_pred EEEEeeeCcc-cC-ceEEEEeCCcccCCCcc---eEEecCCe------EEEEecccCCCCcEEEEEEEeCC
Q psy14532 130 LYLGCPVAGY-PI-ESITWQKGVQQLPLNRR---QKVFPNGT------LLIENVQKDHDRGVYWCTATNKQ 189 (258)
Q Consensus 130 ~~l~C~~~~~-~~-~~i~W~~~~~~~~~~~~---~~~~~~~~------l~i~~~~~~~~~g~y~C~~~~~~ 189 (258)
++|.|.+.|. |. ..++|++++..+..+.. .....+++ |.+..... ++...|+|.|.+..
T Consensus 2 ~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~-~~~~~~tC~V~H~~ 71 (75)
T smart00407 2 ATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTW-ESGDTYTCQVTHEG 71 (75)
T ss_pred eEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccC-CCCCEEEEEEEEcC
Confidence 6899999884 54 58999999886432211 11123443 33333333 56679999998864
No 336
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=97.92 E-value=1.5e-05 Score=51.75 Aligned_cols=91 Identities=12% Similarity=0.211 Sum_probs=50.0
Q ss_pred cCCCceEEEEEEeec-----CCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceE
Q psy14532 15 QPGPPVSLKCIATGN-----PTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGV 89 (258)
Q Consensus 15 ~~g~~v~l~C~~~~~-----~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~ 89 (258)
.=+++|.|.|.+... +...|.|..+++.+........... ........+ .....++++|.+... +.- .|+
T Consensus 25 ~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~-~~~f~sa~i--~~l~kG~aSL~~~~~-~a~-~Gn 99 (130)
T PF08204_consen 25 VCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKST-SDNFPSAKI--SELLKGNASLKMDKS-DAV-EGN 99 (130)
T ss_dssp TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEE-EGGGTT-BE--GGGGGTB--EEEEHH-HHH--EE
T ss_pred ecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceec-ccCccccch--hHhhCCCEEEEEcch-hcc-ccc
Confidence 448899999998641 2346899998887654322222111 111111112 333445678988887 443 899
Q ss_pred EEEEEEeCCcceeeceEEEEEe
Q psy14532 90 YWCTATNKQGRSSSQNVHISVT 111 (258)
Q Consensus 90 Y~C~~~~~~~~~~~~~~~l~v~ 111 (258)
|+|.+........ ..+.|...
T Consensus 100 YTCeVt~~~~ege-~~i~Lk~~ 120 (130)
T PF08204_consen 100 YTCEVTELSREGE-TTIELKYR 120 (130)
T ss_dssp EEEEEEETTEEEE-EEEEEEE-
T ss_pred eEEEEEecCCCce-EEEEEEEE
Confidence 9999998877666 66666664
No 337
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=97.92 E-value=0.00013 Score=45.01 Aligned_cols=63 Identities=21% Similarity=0.295 Sum_probs=42.2
Q ss_pred ecCCcEEEEeeeCc-cc-CceEEEEeCCcccCCCcc---eEEecCCeEEEE---ecccCCCCcEEEEEEEeCC
Q psy14532 125 IAGEPLYLGCPVAG-YP-IESITWQKGVQQLPLNRR---QKVFPNGTLLIE---NVQKDHDRGVYWCTATNKQ 189 (258)
Q Consensus 125 ~~g~~~~l~C~~~~-~~-~~~i~W~~~~~~~~~~~~---~~~~~~~~l~i~---~~~~~~~~g~y~C~~~~~~ 189 (258)
..|...+|.|.+.| +| ...++|.+||..+. +.. .....++++.+. .+.. .+...|+|.+.+..
T Consensus 13 ~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~-~~~~~~~~p~~d~tyq~~s~l~~~~-~~~~~ysC~V~H~~ 83 (93)
T cd05770 13 ENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP-KVEQSDLSFSKDWTFYLLKSTEFTP-TKGDEYACRVRHNS 83 (93)
T ss_pred cCCCceEEEEEEEEEeCCCCEEEEEECCEECC-CcEECcEEECCCCCEEEEEEEEECC-CCCCeEEEEEEECC
Confidence 34666799999998 45 44889999998865 321 222345555443 2344 67779999999863
No 338
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=97.91 E-value=0.00014 Score=45.24 Aligned_cols=63 Identities=21% Similarity=0.381 Sum_probs=40.4
Q ss_pred CCcEEEEeeeCcc-cCc-eEEEEeCCcccCCC---cceEEecCCeEEE---EecccCCCCcEEEEEEEeCCC
Q psy14532 127 GEPLYLGCPVAGY-PIE-SITWQKGVQQLPLN---RRQKVFPNGTLLI---ENVQKDHDRGVYWCTATNKQG 190 (258)
Q Consensus 127 g~~~~l~C~~~~~-~~~-~i~W~~~~~~~~~~---~~~~~~~~~~l~i---~~~~~~~~~g~y~C~~~~~~~ 190 (258)
++.++|.|.+.|. |.. .++|.+++...... .......++++.+ ..+.. .+...|+|.+.+...
T Consensus 14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~-~~~~~ytC~V~H~~~ 84 (93)
T cd07698 14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPP-EDKARYSCRVEHSGL 84 (93)
T ss_pred CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECC-CCCCEEEEEEEeCCC
Confidence 6789999999995 543 89999998532211 1222233444332 23444 677899999998753
No 339
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=97.90 E-value=0.0002 Score=44.52 Aligned_cols=39 Identities=10% Similarity=0.205 Sum_probs=28.2
Q ss_pred eceeeeecCCCceEEEEEEeec-C-CCeEEEeeCCEeCcCC
Q psy14532 8 KFIQQTLQPGPPVSLKCIATGN-P-TPHISWKLDGYPLAGD 46 (258)
Q Consensus 8 ~~~~~~~~~g~~v~l~C~~~~~-~-~~~v~W~~~~~~~~~~ 46 (258)
.+....+..+..++|.|.+.++ | ...+.|.++|..+..+
T Consensus 7 ~ps~~e~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~ 47 (96)
T cd07697 7 SPSKKEIEKQGQGIYLCLLENFFPDVIQVHWREGNSPSILG 47 (96)
T ss_pred CCCHHHHccCCCEEEEEEEEEEeCCCeEEEEEECCEECcCC
Confidence 3443444557789999999995 4 3488999999886544
No 340
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=97.89 E-value=7.2e-05 Score=46.40 Aligned_cols=64 Identities=19% Similarity=0.268 Sum_probs=39.9
Q ss_pred cCCcEEEEeeeCc-ccC-ceEEEEeCCcccCCCc---ceEEecCCeEE------EEecccCCCCcEEEEEEEeCCC
Q psy14532 126 AGEPLYLGCPVAG-YPI-ESITWQKGVQQLPLNR---RQKVFPNGTLL------IENVQKDHDRGVYWCTATNKQG 190 (258)
Q Consensus 126 ~g~~~~l~C~~~~-~~~-~~i~W~~~~~~~~~~~---~~~~~~~~~l~------i~~~~~~~~~g~y~C~~~~~~~ 190 (258)
.++.++|.|.+.| +|. ..++|.+++..+.... ......++++. +..-.. .+...|+|.|.+...
T Consensus 13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w-~~~~~ytC~V~H~~~ 87 (94)
T cd05847 13 TSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDW-KSGKTYTCKVTHQGT 87 (94)
T ss_pred CCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHh-cCCCeEEEEEEECCe
Confidence 4567999999988 554 5899999988753221 11122333333 332222 356799999998653
No 341
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=97.87 E-value=5.4e-05 Score=48.07 Aligned_cols=83 Identities=12% Similarity=0.070 Sum_probs=46.9
Q ss_pred eeeceeeeecCCCceEEEEEEeecC--C-CeEEEeeCCE-eCcCCccccceecccceeeccccccceee-----eeCCcE
Q psy14532 6 IYKFIQQTLQPGPPVSLKCIATGNP--T-PHISWKLDGY-PLAGDRHENKNRIGEARVQQLPLNRRQKV-----FPNGTL 76 (258)
Q Consensus 6 ~~~~~~~~~~~g~~v~l~C~~~~~~--~-~~v~W~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l 76 (258)
..++....+..|+.++|+|.+.++. . ..+.|+|... .+..- ........... ....+... ....+|
T Consensus 2 l~~~~~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c---~~~~~~g~~~~--~~~~r~tcs~~~s~ntv~L 76 (115)
T cd05721 2 LVQQSPVLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVC---AVTGNMSNQLQ--TSLDGFNCDGTLGNEQVNF 76 (115)
T ss_pred eeecCCeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEE---EEEeCCCcccc--ccCCCeEEeEeCCCCEEEE
Confidence 3455667789999999999997743 3 3688998521 21110 00000000000 01111111 112358
Q ss_pred EEeecccCCCceEEEEEE
Q psy14532 77 LIENVQKDHDRGVYWCTA 94 (258)
Q Consensus 77 ~i~~~~~~~d~G~Y~C~~ 94 (258)
.|.++ +.+|++.|.|..
T Consensus 77 ~l~~L-~a~DTa~Y~Ca~ 93 (115)
T cd05721 77 TLQNL-RANQTDIYFCKI 93 (115)
T ss_pred EEcCC-CHHHCeEEEEEe
Confidence 89999 999999999975
No 342
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=97.85 E-value=0.00027 Score=43.92 Aligned_cols=61 Identities=20% Similarity=0.383 Sum_probs=39.9
Q ss_pred CcEEEEeeeCc-ccCceEEEEeCCc----ccC-------------CCcceEEe----cCCeEEEEecccCCCCcEEEEEE
Q psy14532 128 EPLYLGCPVAG-YPIESITWQKGVQ----QLP-------------LNRRQKVF----PNGTLLIENVQKDHDRGVYWCTA 185 (258)
Q Consensus 128 ~~~~l~C~~~~-~~~~~i~W~~~~~----~~~-------------~~~~~~~~----~~~~l~i~~~~~~~~~g~y~C~~ 185 (258)
+.++|.|.... .....++|.+... .+. ...+.... .+.+|.|.+++. +|+|.|+|.+
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~-~D~G~Y~C~~ 79 (96)
T cd05889 1 EKMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATE-EDVGLYCCSL 79 (96)
T ss_pred CCEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCc-ccCEEEEEEE
Confidence 36789998753 2345788988422 110 11222222 346899999998 9999999999
Q ss_pred EeCC
Q psy14532 186 TNKQ 189 (258)
Q Consensus 186 ~~~~ 189 (258)
...-
T Consensus 80 ~t~P 83 (96)
T cd05889 80 VTYP 83 (96)
T ss_pred EeCC
Confidence 7653
No 343
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=97.83 E-value=5.7e-05 Score=47.57 Aligned_cols=65 Identities=15% Similarity=0.304 Sum_probs=42.0
Q ss_pred eecCCcEEEEeeeCc-cc-CceEEEEeCCcccCCCc---ceEEecCCeEE------EEecccCCCCcEEEEEEEeCC
Q psy14532 124 AIAGEPLYLGCPVAG-YP-IESITWQKGVQQLPLNR---RQKVFPNGTLL------IENVQKDHDRGVYWCTATNKQ 189 (258)
Q Consensus 124 ~~~g~~~~l~C~~~~-~~-~~~i~W~~~~~~~~~~~---~~~~~~~~~l~------i~~~~~~~~~g~y~C~~~~~~ 189 (258)
...++.++|.|.+.| +| ...+.|+++|..+.... ......++++. +..-.. .+...|+|.|.+..
T Consensus 14 ~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w-~~~~~~sC~V~H~~ 89 (100)
T cd07699 14 LEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDW-NKHKVYTCEVTHEG 89 (100)
T ss_pred HccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHh-CCCCeEEEEEEecC
Confidence 445678999999988 56 55899999998874321 11112244433 332222 45679999999875
No 344
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=97.82 E-value=6.5e-05 Score=43.51 Aligned_cols=59 Identities=37% Similarity=0.571 Sum_probs=42.3
Q ss_pred EEEEeeeCcccCceEEEEeCCcccCCCc-------ceEEecCCeEEEEecccCCCCcEEEEEEEeCC
Q psy14532 130 LYLGCPVAGYPIESITWQKGVQQLPLNR-------RQKVFPNGTLLIENVQKDHDRGVYWCTATNKQ 189 (258)
Q Consensus 130 ~~l~C~~~~~~~~~i~W~~~~~~~~~~~-------~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~ 189 (258)
+.|.|.+.+.+...+.|++++....... .........|.|.++.. .|.|.|.|.+.+..
T Consensus 1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-~d~g~y~C~~~~~~ 66 (74)
T cd00096 1 VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTL-EDSGTYTCVASNSA 66 (74)
T ss_pred CEEEEEecCCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCc-ccCcEEEEEEecCc
Confidence 4689999886778999999776543322 11122334688888886 89999999998764
No 345
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=97.80 E-value=8.8e-05 Score=48.23 Aligned_cols=69 Identities=25% Similarity=0.338 Sum_probs=47.1
Q ss_pred CCCcceecCCcEEEEeeeCcc-cCceEEEEeCC--ccc------------CCCcceEEec-----CCeEEEEecccCCCC
Q psy14532 119 MGNVSAIAGEPLYLGCPVAGY-PIESITWQKGV--QQL------------PLNRRQKVFP-----NGTLLIENVQKDHDR 178 (258)
Q Consensus 119 ~~~~~~~~g~~~~l~C~~~~~-~~~~i~W~~~~--~~~------------~~~~~~~~~~-----~~~l~i~~~~~~~~~ 178 (258)
+..+.+..|++++|.|..... ....+.|++.. ..+ ....++.+.. ..+|.|.++.. +|+
T Consensus 6 ~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~-~Ds 84 (116)
T cd07706 6 QPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQL-EDS 84 (116)
T ss_pred CCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCH-HHC
Confidence 445678899999999987653 45679999842 111 1123333321 23589999997 999
Q ss_pred cEEEEEEEeC
Q psy14532 179 GVYWCTATNK 188 (258)
Q Consensus 179 g~y~C~~~~~ 188 (258)
|.|.|.+...
T Consensus 85 g~Y~C~~~~~ 94 (116)
T cd07706 85 AKYFCALSTL 94 (116)
T ss_pred EEEEEEEECC
Confidence 9999999853
No 346
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.80 E-value=9.4e-05 Score=46.70 Aligned_cols=65 Identities=18% Similarity=0.266 Sum_probs=39.9
Q ss_pred eecCCcEEEEeeeCc-ccC-ceEEEEeCCcccCCCcc--eE--Ee--cCCeEE------EEecccCCCCcEEEEEEEeCC
Q psy14532 124 AIAGEPLYLGCPVAG-YPI-ESITWQKGVQQLPLNRR--QK--VF--PNGTLL------IENVQKDHDRGVYWCTATNKQ 189 (258)
Q Consensus 124 ~~~g~~~~l~C~~~~-~~~-~~i~W~~~~~~~~~~~~--~~--~~--~~~~l~------i~~~~~~~~~g~y~C~~~~~~ 189 (258)
+..++.++|.|.+.| +|. ..++|.+++..+..... .. .. .++++. +..-.. .+...|+|.|.+..
T Consensus 13 ~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w-~~~~~ytC~V~H~~ 91 (102)
T cd05768 13 LSLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDW-NAGDVFTCVVGHEA 91 (102)
T ss_pred hCcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHh-cCCCcEEEEeEeCC
Confidence 345678999999998 453 37899999887643211 01 11 134433 322212 35568999999864
No 347
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=97.77 E-value=0.00033 Score=43.55 Aligned_cols=61 Identities=16% Similarity=0.290 Sum_probs=37.9
Q ss_pred CcEEEEeee-CcccCceEEEEeCCcccCCCcceEEecCC------eEEEEecccCCCCcEEEEEEEeCCC
Q psy14532 128 EPLYLGCPV-AGYPIESITWQKGVQQLPLNRRQKVFPNG------TLLIENVQKDHDRGVYWCTATNKQG 190 (258)
Q Consensus 128 ~~~~l~C~~-~~~~~~~i~W~~~~~~~~~~~~~~~~~~~------~l~i~~~~~~~~~g~y~C~~~~~~~ 190 (258)
....+.|.+ .|+|.+.|+|+++..... ........++ .|.+.... ++++..|+|.+.+...
T Consensus 16 ~~~va~C~s~~gkP~a~ItW~~~~~~~~-~~~~~~~~~g~~tv~S~l~~~p~~-~d~G~~~tC~v~h~~l 83 (95)
T cd05719 16 PVTVATCVSANGKPPATISWETTLGGEA-ETQSKENPNGTVTVTSEYRLVPSR-EANGKELTCVVSHPTL 83 (95)
T ss_pred ccEEEEEECCCCcCCCEEEEEeCCCCcc-eeEeecCCCCCEEEEEEEEEecCH-HHCCCEEEEEEeCccc
Confidence 467889998 568999999999721111 1111122333 34454444 3666799999998763
No 348
>PHA03273 envelope glycoprotein C; Provisional
Probab=97.77 E-value=0.0036 Score=49.28 Aligned_cols=158 Identities=24% Similarity=0.371 Sum_probs=92.2
Q ss_pred cEEEeecccCCCceEEEEEEEeCCcc-eeeceEEEEEecCCeeccCCCcceecCCcEEEEeeeCc-ccC--ceEEEEeCC
Q psy14532 75 TLLIENVQKDHDRGVYWCTATNKQGR-SSSQNVHISVTGAPFVRPMGNVSAIAGEPLYLGCPVAG-YPI--ESITWQKGV 150 (258)
Q Consensus 75 ~l~i~~~~~~~d~G~Y~C~~~~~~~~-~~~~~~~l~v~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~--~~i~W~~~~ 150 (258)
.|.|..+ +...+|.|+-...+..+. .....+.+..+.+|.+.. ....+.+|+.-.-.|.+.. +|+ ..+.|++|+
T Consensus 199 ~LtI~sl-taaTeGvYtWr~~~~n~t~~~~~~VtV~~yr~Psvsv-~~~PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf~dg 276 (486)
T PHA03273 199 PLTIKSV-DWRTAGVYVWSLYAKNGTLVNSTSVTVSTYNAPLVDL-SVHPSLKGENYRAVCVVASYFPHSSVKLRWYKNA 276 (486)
T ss_pred ceEEEec-chhhceEEEEEEecCCCceeeeeEEEEEEecCCcccc-cCCccccCCCceEEEEeeeecCCCceEEEEEeCC
Confidence 3899999 999999998776554432 222455555566665443 2345779999999999876 453 389999999
Q ss_pred cccCCCc----ceEEecCCe------EEEEecccCCCCcEEEEEEEeCCCCCc----cceEEEEeecCCccccCCCCCcc
Q psy14532 151 QQLPLNR----RQKVFPNGT------LLIENVQKDHDRGVYWCTATNKQGRSS----SQNVHISVTVPPKIAPFEFQPDL 216 (258)
Q Consensus 151 ~~~~~~~----~~~~~~~~~------l~i~~~~~~~~~g~y~C~~~~~~~~~~----~~~~~l~v~~~p~~~~~~~~~~~ 216 (258)
..+.... ......++. |.+......+..-..+|.+........ +....-.|..+|.+.+. .
T Consensus 277 ~~V~~~~~~~~~~~~~~~gl~T~vStlt~~~~~~~~~PP~lrC~v~W~rd~vS~~RfsAt~~P~Vy~~P~Is~~-----F 351 (486)
T PHA03273 277 KEVDFTKYVTNASSVWVDGLITRISTLSIPVDPDEEYTPSLRCSIEWYRDEVSFARIAKAGTPSVFVAPTVSVT-----V 351 (486)
T ss_pred eeccccccceeeEEEecCCceEEEEEEeccCcccCCCCCCceEEEEEccCCcceeeccccccCccccCCeEEEE-----E
Confidence 8876221 122222232 222222111333478999987654221 11222334444443322 1
Q ss_pred CCCCeeeEEEEeccCCCC--ceeEEEECC
Q psy14532 217 HSGDRAGVQCLVTKGDPP--LTISWLKNG 243 (258)
Q Consensus 217 ~~g~~~~l~C~~~~~~p~--~~~~W~~~g 243 (258)
. ++ ...|.+ ...|. ..+.|+-++
T Consensus 352 ~-~G--~AVCtA-~CVP~egV~l~W~v~D 376 (486)
T PHA03273 352 E-DG--DAVCTA-KCVPSTGVFVSWSVND 376 (486)
T ss_pred e-CC--EEEEec-ccccCCCeeEEEEccC
Confidence 2 22 456777 45554 789998755
No 349
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.74 E-value=0.00024 Score=44.27 Aligned_cols=34 Identities=21% Similarity=0.353 Sum_probs=25.4
Q ss_pred eceeeeecCCCceEEEEEEeec--CC-CeEEEeeCCE
Q psy14532 8 KFIQQTLQPGPPVSLKCIATGN--PT-PHISWKLDGY 41 (258)
Q Consensus 8 ~~~~~~~~~g~~v~l~C~~~~~--~~-~~v~W~~~~~ 41 (258)
.|....+..|+.++|.|.+.++ |. ..|+|.|++.
T Consensus 5 pPs~~~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~ 41 (96)
T cd07696 5 PPSPKQLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSG 41 (96)
T ss_pred CcCHHHhccCCCeEEEEEEeCCCCCCCcEEEEEECCe
Confidence 3344446679999999999987 33 3789999864
No 350
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.74 E-value=0.00019 Score=40.70 Aligned_cols=49 Identities=27% Similarity=0.477 Sum_probs=35.4
Q ss_pred CCcEEEEeeeCcccCceEEEEeCCcccCCCcceEEecCCeEEEEecccCCCCcEEEEEEEe
Q psy14532 127 GEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATN 187 (258)
Q Consensus 127 g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~ 187 (258)
.+.|.|.|... ..|.|++ |..+... .+.+|.+.+... +..|.|.|.+++
T Consensus 6 ~~~V~L~C~~~----tsi~W~k-G~~~~~~------~~~tlnLGs~~~-DPRG~Y~C~~s~ 54 (69)
T cd07691 6 EGKVFLKCNGA----TNITWKK-GKEILEV------SNTLLDLGSRIN-DPRGTYSCKESE 54 (69)
T ss_pred CceEEEEecCC----CcEEEec-Ccccccc------cccEEeccCccc-CCCcceEecCcc
Confidence 45799999762 5699999 4433221 145677777776 899999998876
No 351
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=97.72 E-value=0.00028 Score=43.75 Aligned_cols=61 Identities=16% Similarity=0.223 Sum_probs=37.8
Q ss_pred CcEEEEeeeC-cccCceEEEEeCCcccCCCcceEEecCC------eEEEEecccCCCCcEEEEEEEeCCC
Q psy14532 128 EPLYLGCPVA-GYPIESITWQKGVQQLPLNRRQKVFPNG------TLLIENVQKDHDRGVYWCTATNKQG 190 (258)
Q Consensus 128 ~~~~l~C~~~-~~~~~~i~W~~~~~~~~~~~~~~~~~~~------~l~i~~~~~~~~~g~y~C~~~~~~~ 190 (258)
....+.|.+. ++|.+.|+|+++..... ........++ .|.+.... ++|+..|+|++.+...
T Consensus 16 ~~~va~C~s~~gkPaa~IsW~~~~~g~~-~~~~~~~~~gt~tv~S~l~~~P~~-~d~Gk~ltC~v~h~al 83 (95)
T cd07703 16 PVPVAKCVSANGRPPARISWSSTLGGNA-NTTSKENGDGTVTVTSEYSLVPTP-EANGKEVTCKVEHETL 83 (95)
T ss_pred ccEEEEEEcCCCCCCcEEEEEcCCCCCe-eEEEEeCCCCCEEEEEEEEEecCH-HHCCCEEEEEEeCccc
Confidence 4578999875 68999999998732211 1111122233 34444443 3667799999999753
No 352
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=97.70 E-value=0.00026 Score=42.91 Aligned_cols=69 Identities=20% Similarity=0.347 Sum_probs=42.6
Q ss_pred cCCCceEEEEEEeec-CCC-eEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEE---EeecccCCCceE
Q psy14532 15 QPGPPVSLKCIATGN-PTP-HISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLL---IENVQKDHDRGV 89 (258)
Q Consensus 15 ~~g~~v~l~C~~~~~-~~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---i~~~~~~~d~G~ 89 (258)
..++.++|.|.+.++ |.. .|.|++++..+........... ..+++.. ...+ ...+...
T Consensus 6 ~~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~----------------~~dgty~~~s~l~v-~~~~~~~ 68 (83)
T PF07654_consen 6 ELGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPP----------------NSDGTYSVTSSLTV-TWNSGDE 68 (83)
T ss_dssp HSTSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEE----------------ETTSEEEEEEEEEE-ETTTTGG
T ss_pred cCCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeeccccc----------------ccccceeeeEEEEe-cCCCCCE
Confidence 348999999999985 433 8999999987765421111110 1222211 2333 3456668
Q ss_pred EEEEEEeCCcc
Q psy14532 90 YWCTATNKQGR 100 (258)
Q Consensus 90 Y~C~~~~~~~~ 100 (258)
|+|.+.+....
T Consensus 69 ysC~V~H~~l~ 79 (83)
T PF07654_consen 69 YSCRVTHESLP 79 (83)
T ss_dssp EEEEEEETTSS
T ss_pred EEEEEEECCCC
Confidence 99999887543
No 353
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.70 E-value=0.00024 Score=44.30 Aligned_cols=68 Identities=18% Similarity=0.317 Sum_probs=40.7
Q ss_pred cceecCCcEEEEeeeCcc--c-CceEEEEeCCccc-CCC-cceEEecCCeEEEEecc---c--CCCCcEEEEEEEeCC
Q psy14532 122 VSAIAGEPLYLGCPVAGY--P-IESITWQKGVQQL-PLN-RRQKVFPNGTLLIENVQ---K--DHDRGVYWCTATNKQ 189 (258)
Q Consensus 122 ~~~~~g~~~~l~C~~~~~--~-~~~i~W~~~~~~~-~~~-~~~~~~~~~~l~i~~~~---~--~~~~g~y~C~~~~~~ 189 (258)
..+..|+.++|.|.+.|. | ...++|.|+++.. ... .......++++.+...- . ..+...|+|.|.+..
T Consensus 9 ~~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~H~~ 86 (96)
T cd07696 9 KQLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTSTLNVSTDDWISGDTFQCKVTHPD 86 (96)
T ss_pred HHhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEECCC
Confidence 345568899999999887 4 3488999986432 111 11122334444443211 1 134558999999875
No 354
>PHA02633 hypothetical protein; Provisional
Probab=97.68 E-value=0.00016 Score=39.81 Aligned_cols=39 Identities=21% Similarity=0.371 Sum_probs=31.6
Q ss_pred CCcEEEeecccCCCceEEEEEEEeCCcceeeceEEEEEecC
Q psy14532 73 NGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGA 113 (258)
Q Consensus 73 ~~~l~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~ 113 (258)
...|+|.++ ..+|+|.|.|.+.+...... .++.|+|...
T Consensus 17 ~~nLwilpa-~~sDSGiYiC~~rn~t~c~~-~si~l~V~~~ 55 (63)
T PHA02633 17 CNNMLILNP-TQSDSGIYMCITKNETYSDM-MKFDLCICLR 55 (63)
T ss_pred cccEEEecc-ccccCcEEEEEEcCCCeeEE-EEEEEEEeec
Confidence 346999999 99999999999998766665 6777777644
No 355
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=97.66 E-value=0.00042 Score=45.26 Aligned_cols=69 Identities=23% Similarity=0.271 Sum_probs=45.5
Q ss_pred CCCcceecCCcEEEEeeeCccc------CceEEEEeCCcc-----cC------------CCcceEEe-----cCCeEEEE
Q psy14532 119 MGNVSAIAGEPLYLGCPVAGYP------IESITWQKGVQQ-----LP------------LNRRQKVF-----PNGTLLIE 170 (258)
Q Consensus 119 ~~~~~~~~g~~~~l~C~~~~~~------~~~i~W~~~~~~-----~~------------~~~~~~~~-----~~~~l~i~ 170 (258)
+..+.+.+|+.|+|.|...... ...+.|++.... +. ...++.+. .+..|.|.
T Consensus 6 P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I~ 85 (119)
T cd05712 6 PKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLIS 85 (119)
T ss_pred CCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEEc
Confidence 4556788999999999764221 246899985321 00 11222221 12369999
Q ss_pred ecccCCCCcEEEEEEEeC
Q psy14532 171 NVQKDHDRGVYWCTATNK 188 (258)
Q Consensus 171 ~~~~~~~~g~y~C~~~~~ 188 (258)
+++. +|+|.|.|.+...
T Consensus 86 ~l~~-~Dsg~Y~C~~~~~ 102 (119)
T cd05712 86 DAQP-EDSGKYFFRVELG 102 (119)
T ss_pred cCCh-hhCeEEEEEEEcC
Confidence 9997 9999999998764
No 356
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.63 E-value=0.00021 Score=40.51 Aligned_cols=50 Identities=28% Similarity=0.476 Sum_probs=34.8
Q ss_pred CCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEEEEEE
Q psy14532 16 PGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTAT 95 (258)
Q Consensus 16 ~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~~~ 95 (258)
..+.|.|+|.. ...|.|++ |..+... .+.+|.+-.. ..+-.|.|.|.+.
T Consensus 5 ~~~~V~L~C~~----~tsi~W~k-G~~~~~~-------------------------~~~tlnLGs~-~~DPRG~Y~C~~s 53 (69)
T cd07691 5 SEGKVFLKCNG----ATNITWKK-GKEILEV-------------------------SNTLLDLGSR-INDPRGTYSCKES 53 (69)
T ss_pred cCceEEEEecC----CCcEEEec-Ccccccc-------------------------cccEEeccCc-ccCCCcceEecCc
Confidence 34579999955 25699999 5443322 1345667777 7778899999886
Q ss_pred e
Q psy14532 96 N 96 (258)
Q Consensus 96 ~ 96 (258)
+
T Consensus 54 ~ 54 (69)
T cd07691 54 E 54 (69)
T ss_pred c
Confidence 6
No 357
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=97.62 E-value=0.00061 Score=41.27 Aligned_cols=64 Identities=25% Similarity=0.464 Sum_probs=42.6
Q ss_pred cCCcEEEEeeeCc-ccCc-eEEEEeCCcccCCCcceE--E-ecCCeEEEE---ecccCCCCcEEEEEEEeCCC
Q psy14532 126 AGEPLYLGCPVAG-YPIE-SITWQKGVQQLPLNRRQK--V-FPNGTLLIE---NVQKDHDRGVYWCTATNKQG 190 (258)
Q Consensus 126 ~g~~~~l~C~~~~-~~~~-~i~W~~~~~~~~~~~~~~--~-~~~~~l~i~---~~~~~~~~g~y~C~~~~~~~ 190 (258)
.++.++|.|.+.+ +|.. .|.|.+++..+....... . ..++++.+. .+.. .+...|+|+|.+...
T Consensus 7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~-~~~~~ysC~V~H~~l 78 (83)
T PF07654_consen 7 LGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVTW-NSGDEYSCRVTHESL 78 (83)
T ss_dssp STSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEET-TTTGGEEEEEEETTS
T ss_pred CCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEecC-CCCCEEEEEEEECCC
Confidence 4789999999988 4533 899999998765433211 1 345543322 2334 667799999998754
No 358
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=97.59 E-value=0.0003 Score=44.67 Aligned_cols=64 Identities=22% Similarity=0.330 Sum_probs=41.9
Q ss_pred ceecCCcEEEEeeeCcccCceEEEEeCCcc----cC------C------------CcceEEec---CCeEEEEecccCCC
Q psy14532 123 SAIAGEPLYLGCPVAGYPIESITWQKGVQQ----LP------L------------NRRQKVFP---NGTLLIENVQKDHD 177 (258)
Q Consensus 123 ~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~----~~------~------------~~~~~~~~---~~~l~i~~~~~~~~ 177 (258)
.+..|+.++|.|.........+.|++.... .. . ..+..... ...|.|.++.. +|
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~-sD 80 (104)
T cd05720 2 DAELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQK-EN 80 (104)
T ss_pred cccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCH-HH
Confidence 357899999999886544457999984321 10 0 01111111 12589999997 99
Q ss_pred CcEEEEEEEe
Q psy14532 178 RGVYWCTATN 187 (258)
Q Consensus 178 ~g~y~C~~~~ 187 (258)
+|.|.|.+.+
T Consensus 81 sgtY~Ca~~~ 90 (104)
T cd05720 81 EGYYFCSVAS 90 (104)
T ss_pred CEEEEEEEcc
Confidence 9999998763
No 359
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.59 E-value=0.00095 Score=41.51 Aligned_cols=27 Identities=30% Similarity=0.636 Sum_probs=22.3
Q ss_pred CCCceEEEEEEeec-C-CCeEEEeeCCEe
Q psy14532 16 PGPPVSLKCIATGN-P-TPHISWKLDGYP 42 (258)
Q Consensus 16 ~g~~v~l~C~~~~~-~-~~~v~W~~~~~~ 42 (258)
.++.++|.|.+.++ | ...|.|+|+|+.
T Consensus 15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~ 43 (95)
T cd04985 15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS 43 (95)
T ss_pred CCCcEEEEEEEeeEECCCcEEEEeECCEE
Confidence 56779999999985 3 348999999987
No 360
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=97.59 E-value=0.0014 Score=40.79 Aligned_cols=67 Identities=16% Similarity=0.256 Sum_probs=38.9
Q ss_pred ceecCCcEEEEeeeCc-cc-CceEEEEeCCcccCCCcc--eEEecCCeEEEE---ecccCCCCcEEEEEEEeCC
Q psy14532 123 SAIAGEPLYLGCPVAG-YP-IESITWQKGVQQLPLNRR--QKVFPNGTLLIE---NVQKDHDRGVYWCTATNKQ 189 (258)
Q Consensus 123 ~~~~g~~~~l~C~~~~-~~-~~~i~W~~~~~~~~~~~~--~~~~~~~~l~i~---~~~~~~~~g~y~C~~~~~~ 189 (258)
....++.++|.|.+.+ +| ...++|.++|..+..+.. .....++++.+. .+...+....|+|.|.+..
T Consensus 12 e~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~~~~~~dty~~~S~L~vt~~~~~~~ysC~V~H~g 85 (96)
T cd07697 12 EIEKQGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSEKDKDNDVYSTTSWLTVTKDSLGKKFRCIYKHEG 85 (96)
T ss_pred HHccCCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEeccEecCCCEEEEEEEEEECchhCCCeEEEEEEECC
Confidence 3444577999999998 55 348899999987543211 011112233322 1222123446999999854
No 361
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=97.58 E-value=0.00032 Score=45.17 Aligned_cols=66 Identities=21% Similarity=0.334 Sum_probs=40.9
Q ss_pred eecCCcEEEEeeeCc-ccC-ceEEEEeCCcccCCCcc---eEEecC-Ce------EEEEecccCCC-CcEEEEEEEeCCC
Q psy14532 124 AIAGEPLYLGCPVAG-YPI-ESITWQKGVQQLPLNRR---QKVFPN-GT------LLIENVQKDHD-RGVYWCTATNKQG 190 (258)
Q Consensus 124 ~~~g~~~~l~C~~~~-~~~-~~i~W~~~~~~~~~~~~---~~~~~~-~~------l~i~~~~~~~~-~g~y~C~~~~~~~ 190 (258)
+..++.++|.|.+.+ +|. ..++|.+|+..+..+.. .....+ ++ |.+..... .+ ...|+|.|.+...
T Consensus 15 ~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w-~~~~~~ytC~V~H~g~ 93 (115)
T cd05769 15 IRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEW-FNPRNTFTCIVQFYGG 93 (115)
T ss_pred hccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHh-ccCCCeEEEEEEEeCC
Confidence 335678999999988 554 48999999977653321 111222 33 33333222 23 5689999998754
No 362
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.54 E-value=0.00052 Score=38.64 Aligned_cols=52 Identities=33% Similarity=0.603 Sum_probs=35.2
Q ss_pred eecCCcEEEEeeeCcccCceEEEEeCCcccCCCcceEEecCCeEEEEecccCCCCcEEEEEEEe
Q psy14532 124 AIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATN 187 (258)
Q Consensus 124 ~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~ 187 (258)
...|.+|+|+|+... ..+.|.+++..+... ...+.+.+-. ++.|.|.|.+.+
T Consensus 4 sisGTtVtlTCP~~~---~~i~W~~n~~~~~g~-------~~~~~~~~~~--e~~G~Y~C~~~~ 55 (65)
T cd07692 4 SISGTTVTVTCPLSG---DDIKWKKNDQVSQGS-------DEKYLSLNHF--SSSGYYHCTADN 55 (65)
T ss_pred EEeccEEEEECCCCC---CCceEEeCCccCCCC-------CceEEeeccC--CCCceEEEEeCC
Confidence 357899999998653 239999988554321 1233444443 689999999864
No 363
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=97.49 E-value=0.00054 Score=44.56 Aligned_cols=68 Identities=21% Similarity=0.446 Sum_probs=44.6
Q ss_pred CCCcceecCCcEEEEeeeCccc--CceEEEEeCC--cccC-----------------CCcceEEe--c-C--CeEEEEec
Q psy14532 119 MGNVSAIAGEPLYLGCPVAGYP--IESITWQKGV--QQLP-----------------LNRRQKVF--P-N--GTLLIENV 172 (258)
Q Consensus 119 ~~~~~~~~g~~~~l~C~~~~~~--~~~i~W~~~~--~~~~-----------------~~~~~~~~--~-~--~~l~i~~~ 172 (258)
+....+.+|++++|.|...+.. ...+.|++.. +... ...++... . . ..|.|.++
T Consensus 4 ~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~ 83 (117)
T cd04981 4 SGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNSL 83 (117)
T ss_pred CCCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECCC
Confidence 3456788999999999875432 4569999842 2110 01122221 1 1 15899999
Q ss_pred ccCCCCcEEEEEEEe
Q psy14532 173 QKDHDRGVYWCTATN 187 (258)
Q Consensus 173 ~~~~~~g~y~C~~~~ 187 (258)
.. +|+|.|.|.+..
T Consensus 84 ~~-~Dsa~YyCa~~~ 97 (117)
T cd04981 84 TP-EDTAVYYCARGL 97 (117)
T ss_pred CH-HHCEEEEEEEEc
Confidence 98 999999998864
No 364
>PHA03271 envelope glycoprotein C; Provisional
Probab=97.41 E-value=0.038 Score=43.16 Aligned_cols=163 Identities=21% Similarity=0.276 Sum_probs=87.2
Q ss_pred cEEEeecccCCCceEEEEEEEeCCcc-eeeceEEEEEecCCeeccCCCcceecCCcEEEEeeeCc-ccC--ceEEEEeCC
Q psy14532 75 TLLIENVQKDHDRGVYWCTATNKQGR-SSSQNVHISVTGAPFVRPMGNVSAIAGEPLYLGCPVAG-YPI--ESITWQKGV 150 (258)
Q Consensus 75 ~l~i~~~~~~~d~G~Y~C~~~~~~~~-~~~~~~~l~v~~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~--~~i~W~~~~ 150 (258)
.+.|.++ ...|+|.|+-...+.... ...+.+.+.+...|.........+..|+.-.-.|.+.. +|+ ..+.|++||
T Consensus 208 ~v~I~sv-D~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~~RPPsVsV~a~PVL~Ge~YkAtC~vAnYYPP~SvrlrWf~nG 286 (490)
T PHA03271 208 GVEIRNV-DYADNGYIQVIMRDPFNRPLLDKHIYIRVCQRPASVDVLAPPVLSGENYKASCIVRHFYPPGSVYVSWRQNG 286 (490)
T ss_pred eEEEEEe-ecccceEEEEEecCCCCCccccceEEEEEEecCCCccccCCccccCCCceEEEEeeeecCCCceEEEEEeCC
Confidence 5889999 999999765554443322 22255556665443322223345779999999999976 453 379999998
Q ss_pred cccCCCcce-EE-----ecCC-----eEEEEecccCCCCcEEEEEEEeCCCCCccc---eEEEEeecCCccccCCCCCcc
Q psy14532 151 QQLPLNRRQ-KV-----FPNG-----TLLIENVQKDHDRGVYWCTATNKQGRSSSQ---NVHISVTVPPKIAPFEFQPDL 216 (258)
Q Consensus 151 ~~~~~~~~~-~~-----~~~~-----~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~---~~~l~v~~~p~~~~~~~~~~~ 216 (258)
..+...... .. ...+ ++.+.+.. .+..-..+|.+........++ ...-.|+.+|.+.+. .
T Consensus 287 ~~V~~~~~rdt~~~w~d~~~g~S~VSTltl~a~~-~~~PPsLRCeV~W~rd~v~s~rnAaatP~VY~~P~ISv~-----F 360 (490)
T PHA03271 287 NIATPRKDRDGSFWWFESGRGATLVSTITLGNSG-IDPPPKISCLVAWKQGDMISTTNATAIPTVYHHPRISLA-----F 360 (490)
T ss_pred ccccCccccceeEEEecCCCceeEEEEEEccccc-CCCCCCceEEEEEccCCceeeeecccCCccccCCeEEEE-----E
Confidence 776432211 10 1111 12222221 133348899998765422211 112223333333222 2
Q ss_pred CCCCeeeEEEEeccCCC-CceeEEEECCEeccc
Q psy14532 217 HSGDRAGVQCLVTKGDP-PLTISWLKNGLPILS 248 (258)
Q Consensus 217 ~~g~~~~l~C~~~~~~p-~~~~~W~~~g~~l~~ 248 (258)
..| ...|.+ ..-| ...+.|+-++...++
T Consensus 361 edG---~AVCtA-~CVP~gV~lrWlVgD~p~pn 389 (490)
T PHA03271 361 KDG---YAICTI-ECVPSGITVRWLVHDEPQPN 389 (490)
T ss_pred eCC---EEEEec-cccCCCcEEEEEecCCCCCC
Confidence 223 345666 3333 578999876655433
No 365
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.37 E-value=0.0012 Score=41.00 Aligned_cols=62 Identities=16% Similarity=0.439 Sum_probs=37.7
Q ss_pred cCCcEEEEeeeCc-cc-CceEEEEeCCcccCCCc---ceEEecCCeE------EEEecccCCCCcEEEEEEEeCC
Q psy14532 126 AGEPLYLGCPVAG-YP-IESITWQKGVQQLPLNR---RQKVFPNGTL------LIENVQKDHDRGVYWCTATNKQ 189 (258)
Q Consensus 126 ~g~~~~l~C~~~~-~~-~~~i~W~~~~~~~~~~~---~~~~~~~~~l------~i~~~~~~~~~g~y~C~~~~~~ 189 (258)
.++.++|.|.+.+ +| ...++|.+++.. ..+. ......+++. .+..... .....|+|.|.+..
T Consensus 15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w-~~~~~ytC~V~H~~ 87 (95)
T cd04985 15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASSQLTVPASEW-KGKESFYCKVEHPS 87 (95)
T ss_pred CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEEEEEEeHHHc-CCCCcEEEEEEeCC
Confidence 4567999999998 45 348899999986 3221 1111124433 3332221 23568999999864
No 366
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=97.36 E-value=0.0025 Score=39.59 Aligned_cols=79 Identities=14% Similarity=0.260 Sum_probs=43.3
Q ss_pred eeceeeeecCCCceEEEEEEe-ecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCC
Q psy14532 7 YKFIQQTLQPGPPVSLKCIAT-GNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDH 85 (258)
Q Consensus 7 ~~~~~~~~~~g~~v~l~C~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~ 85 (258)
.+.............+.|.+. +.|.+.|.|+++. ..... ...... .+ ........|.+... ..+
T Consensus 5 ~~~~~~~~~~~~~~va~C~s~~gkP~a~ItW~~~~---~~~~~-~~~~~~---------~~-g~~tv~S~l~~~p~-~~d 69 (95)
T cd05719 5 AEAGPVALGGEPVTVATCVSANGKPPATISWETTL---GGEAE-TQSKEN---------PN-GTVTVTSEYRLVPS-REA 69 (95)
T ss_pred cceeccccCCCccEEEEEECCCCcCCCEEEEEeCC---CCcce-eEeecC---------CC-CCEEEEEEEEEecC-HHH
Confidence 334444445566678899985 5789999999971 11100 000000 00 00111224555444 555
Q ss_pred CceEEEEEEEeCCcc
Q psy14532 86 DRGVYWCTATNKQGR 100 (258)
Q Consensus 86 d~G~Y~C~~~~~~~~ 100 (258)
|...|+|.+.+....
T Consensus 70 ~G~~~tC~v~h~~l~ 84 (95)
T cd05719 70 NGKELTCVVSHPTLQ 84 (95)
T ss_pred CCCEEEEEEeCcccC
Confidence 667999999987643
No 367
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.32 E-value=0.0011 Score=41.32 Aligned_cols=41 Identities=24% Similarity=0.400 Sum_probs=28.3
Q ss_pred CCcce-eeceeeeecCCCceEEEEEEeecC---CCeEEEeeCCEe
Q psy14532 2 HPQLI-YKFIQQTLQPGPPVSLKCIATGNP---TPHISWKLDGYP 42 (258)
Q Consensus 2 ~p~~~-~~~~~~~~~~g~~v~l~C~~~~~~---~~~v~W~~~~~~ 42 (258)
.|.+. ..|....+..+..++|.|.+.++- ...|.|.++|..
T Consensus 3 ~PsV~l~pPs~e~l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~ 47 (99)
T cd04986 3 KPSLSLQRPALEDLLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK 47 (99)
T ss_pred CCEEEEECcChHHhCcCCccEEEEEEeccCCCCCeEEEEEECCcc
Confidence 35553 334444455788999999999853 348999998764
No 368
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.31 E-value=0.001 Score=41.47 Aligned_cols=66 Identities=20% Similarity=0.295 Sum_probs=39.4
Q ss_pred eecCCcEEEEeeeCc-c-c-CceEEEEeCCcccCCCcceEEecCCe------EEEEecccCCCCcEEEEEEEeCCC
Q psy14532 124 AIAGEPLYLGCPVAG-Y-P-IESITWQKGVQQLPLNRRQKVFPNGT------LLIENVQKDHDRGVYWCTATNKQG 190 (258)
Q Consensus 124 ~~~g~~~~l~C~~~~-~-~-~~~i~W~~~~~~~~~~~~~~~~~~~~------l~i~~~~~~~~~g~y~C~~~~~~~ 190 (258)
...+..++|.|.+.+ + | ...++|.+++..-..........+++ |.+..-.+ ..+..|+|.|.+...
T Consensus 16 l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~~~~~t~~~~~~dgTys~~S~L~v~~~~W-~~g~~ytC~V~H~~l 90 (99)
T cd04986 16 LLLGSSASLTCTLSGLRDPEGAVFTWTPSGGKEAVQTSAESDQCGCYSVSSVLPGCAEEW-NKGEPFACTVTHPEG 90 (99)
T ss_pred hCcCCccEEEEEEeccCCCCCeEEEEEECCccCcEEcCcccCCCCCEEEEEEEEeCHHHh-cCCCeEEEEEECCCc
Confidence 445788999999988 4 4 35899999886511111111123443 33332222 344579999998753
No 369
>smart00406 IGv Immunoglobulin V-Type.
Probab=97.25 E-value=0.00086 Score=40.21 Aligned_cols=56 Identities=23% Similarity=0.575 Sum_probs=34.3
Q ss_pred cEEEEeeeCcccC--ceEEEEeCCc--cc----------------CCCcceEEecC-----CeEEEEecccCCCCcEEEE
Q psy14532 129 PLYLGCPVAGYPI--ESITWQKGVQ--QL----------------PLNRRQKVFPN-----GTLLIENVQKDHDRGVYWC 183 (258)
Q Consensus 129 ~~~l~C~~~~~~~--~~i~W~~~~~--~~----------------~~~~~~~~~~~-----~~l~i~~~~~~~~~g~y~C 183 (258)
++.|.|.+..... ..+.|++... .. ....+...... .+|.|.+++. +|+|.|.|
T Consensus 1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~-~D~G~Y~C 79 (81)
T smart00406 1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRV-EDTGTYYC 79 (81)
T ss_pred CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCH-HHCEEEEE
Confidence 3678998765433 3788987432 10 01122222221 2588999997 99999999
Q ss_pred EE
Q psy14532 184 TA 185 (258)
Q Consensus 184 ~~ 185 (258)
.+
T Consensus 80 ~v 81 (81)
T smart00406 80 AV 81 (81)
T ss_pred cC
Confidence 64
No 370
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=97.20 E-value=0.0034 Score=38.97 Aligned_cols=78 Identities=14% Similarity=0.190 Sum_probs=43.2
Q ss_pred ceeeeecCCCceEEEEEEe-ecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCc
Q psy14532 9 FIQQTLQPGPPVSLKCIAT-GNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDR 87 (258)
Q Consensus 9 ~~~~~~~~g~~v~l~C~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~ 87 (258)
...+.......+.+.|.+. +.|...|.|+++...... ...... ..+ .......|.+... ..+|.
T Consensus 7 ~~~~~~~~~~~~va~C~s~~gkPaa~IsW~~~~~g~~~----~~~~~~--------~~g--t~tv~S~l~~~P~-~~d~G 71 (95)
T cd07703 7 AVEVSAGTIPVPVAKCVSANGRPPARISWSSTLGGNAN----TTSKEN--------GDG--TVTVTSEYSLVPT-PEANG 71 (95)
T ss_pred EEEeecCCCccEEEEEEcCCCCCCcEEEEEcCCCCCee----EEEEeC--------CCC--CEEEEEEEEEecC-HHHCC
Confidence 3344455566789999876 468889999987211100 000000 000 0111224555444 56667
Q ss_pred eEEEEEEEeCCcce
Q psy14532 88 GVYWCTATNKQGRS 101 (258)
Q Consensus 88 G~Y~C~~~~~~~~~ 101 (258)
..|+|++.+.....
T Consensus 72 k~ltC~v~h~al~~ 85 (95)
T cd07703 72 KEVTCKVEHETLQE 85 (95)
T ss_pred CEEEEEEeCcccCC
Confidence 79999999976443
No 371
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=96.92 E-value=0.0065 Score=37.57 Aligned_cols=66 Identities=21% Similarity=0.268 Sum_probs=40.9
Q ss_pred eecCCcEEEEeeeCc-ccC--ceEEEEeCCcccCCCcceE-------EecCCeEEEEecccCCCCcEEEEEEEeCCC
Q psy14532 124 AIAGEPLYLGCPVAG-YPI--ESITWQKGVQQLPLNRRQK-------VFPNGTLLIENVQKDHDRGVYWCTATNKQG 190 (258)
Q Consensus 124 ~~~g~~~~l~C~~~~-~~~--~~i~W~~~~~~~~~~~~~~-------~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~ 190 (258)
+..|..+++.|.+.+ +|. ..+.|+++...+....-.. ......+.+... ++++...|+|.|.-...
T Consensus 12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtftpt-reD~g~~fsC~A~L~l~ 87 (99)
T cd07689 12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFTPT-IEDIGKVLVCRAKLHID 87 (99)
T ss_pred ccCCceEEEEEEecCcccCCceEEEEecCcceecccccccccccCCCCCcceeEEEecc-hhhCCcEEEEEEEEeec
Confidence 478999999999975 554 5899998665443221100 011234555554 43444499999986543
No 372
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=96.89 E-value=0.0081 Score=37.14 Aligned_cols=33 Identities=27% Similarity=0.396 Sum_probs=25.2
Q ss_pred eecCCCceEEEEEEee-cCC--CeEEEeeCCEeCcC
Q psy14532 13 TLQPGPPVSLKCIATG-NPT--PHISWKLDGYPLAG 45 (258)
Q Consensus 13 ~~~~g~~v~l~C~~~~-~~~--~~v~W~~~~~~~~~ 45 (258)
.+.+|..+++.|.+.+ .|. ..+.|+++...+..
T Consensus 11 ~l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~ 46 (99)
T cd07689 11 PLEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPS 46 (99)
T ss_pred cccCCceEEEEEEecCcccCCceEEEEecCcceecc
Confidence 3589999999999975 343 47999997766543
No 373
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=96.71 E-value=0.0059 Score=37.99 Aligned_cols=40 Identities=33% Similarity=0.506 Sum_probs=31.9
Q ss_pred eeCCcEEEeecccCCCceEEEEEEEeCCcceeeceEEEEEe
Q psy14532 71 FPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVT 111 (258)
Q Consensus 71 ~~~~~l~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~ 111 (258)
.++.+|.|+.+ +..|+|.|.-.+.+..|....+.+.+.|.
T Consensus 68 ~enlaLlIkaA-q~qDSG~Y~LEvT~~sG~V~~~~FqVsVF 107 (108)
T PF11465_consen 68 SENLALLIKAA-QPQDSGLYCLEVTNESGKVCTKNFQVSVF 107 (108)
T ss_dssp TTTTEEEESS--SGGG-EEEEEEEEETTSCEEEEEEEEEEE
T ss_pred ccCceEEEeec-CcccCceEEEEEEcCCCcEEEEEEEEEee
Confidence 45678999999 99999999999999988877677776664
No 374
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=96.70 E-value=0.025 Score=43.85 Aligned_cols=139 Identities=17% Similarity=0.221 Sum_probs=75.9
Q ss_pred ceeeeecCCCceEEEEEEee---cCCCeEEEeeCCEeCcCC---ccccc-eecccceeecccc---ccceeeeeCCcEEE
Q psy14532 9 FIQQTLQPGPPVSLKCIATG---NPTPHISWKLDGYPLAGD---RHENK-NRIGEARVQQLPL---NRRQKVFPNGTLLI 78 (258)
Q Consensus 9 ~~~~~~~~g~~v~l~C~~~~---~~~~~v~W~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~l~i 78 (258)
.....+..|..|.|.|..+- .......|+-.+-++..- ..... ...+...-....+ .+-+......+|+|
T Consensus 271 ~~~~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTI 350 (500)
T PHA02914 271 FDEVMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTI 350 (500)
T ss_pred cceeEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEe
Confidence 35567788999999998764 344578898755433211 00000 0000000000000 01112223568999
Q ss_pred eecccCCCceEEEEEEEeCCcceeeceEEEEEecCCeeccCCCcceecCCcEEEEeeeCcc--cCceEEEEeCCccc
Q psy14532 79 ENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGNVSAIAGEPLYLGCPVAGY--PIESITWQKGVQQL 153 (258)
Q Consensus 79 ~~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~g~~~~l~C~~~~~--~~~~i~W~~~~~~~ 153 (258)
.++ ....+|.|.|.+........ ....|.|....... -...........|-+..+ .++.+.|..+|...
T Consensus 351 kka-~I~N~GCY~~~a~~g~~~~e-c~~Cl~V~d~V~f~----W~~e~~n~T~V~Cyv~sy~~kp~si~wkvnGV~~ 421 (500)
T PHA02914 351 KKA-HINNAGCYEAQAFMGKFKEE-CRHCFKVADHVFFK----WNTEGDNETKVACYAAQYDMQPFSILWKSNGVSF 421 (500)
T ss_pred eeE-EEEcCCceEEEEecCcchhh-hhhheEeccEEEEE----EEeccCceEEEEEEEEecccCCceeEEEEccEEe
Confidence 999 99999999999988754333 44445554332110 001112345678887443 45679998877543
No 375
>PHA03270 envelope glycoprotein C; Provisional
Probab=96.65 E-value=0.027 Score=44.22 Aligned_cols=81 Identities=14% Similarity=0.331 Sum_probs=63.0
Q ss_pred CeEEEEecccCCCCcEEEEEEEeCCCC-CccceEEEEeecCCccccCCCCCccCCCCeeeEEEEeccCCCC--ceeEEEE
Q psy14532 165 GTLLIENVQKDHDRGVYWCTATNKQGR-SSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPP--LTISWLK 241 (258)
Q Consensus 165 ~~l~i~~~~~~~~~g~y~C~~~~~~~~-~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~--~~~~W~~ 241 (258)
..|.|..+.. ...|.|+=.+.+..+. ...+.+++..+.+|.+.+.+. .+..|+...-.|.+.+.+|. ..+.|+.
T Consensus 182 ~~L~I~slt~-aTeGvY~Wr~~~~~~~~~~~~~VtV~~yr~Psvsv~~~--PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf~ 258 (466)
T PHA03270 182 QRLVIQELTL-ATQGMYYWARGPADRPHRYGTWTRVRMFRRPSLSIRPH--AVLEGEPFGATCVAANYYPGDRAAFRWFE 258 (466)
T ss_pred ceEEEEEccc-ccceEEEEEEecCCCceeeeeEEEEEEecCCcccccCC--ccccCCCceEEEEeeeecCCCceEEEEEe
Confidence 4589999997 8999999887665442 234567777788888776653 36789999999999767775 5799999
Q ss_pred CCEeccc
Q psy14532 242 NGLPILS 248 (258)
Q Consensus 242 ~g~~l~~ 248 (258)
||..+..
T Consensus 259 ng~~V~~ 265 (466)
T PHA03270 259 GGDEVFA 265 (466)
T ss_pred CCccccC
Confidence 9999864
No 376
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=96.62 E-value=0.02 Score=35.61 Aligned_cols=75 Identities=12% Similarity=0.236 Sum_probs=44.1
Q ss_pred eeeeecCCCceEE-EEEEe-ecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCc
Q psy14532 10 IQQTLQPGPPVSL-KCIAT-GNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDR 87 (258)
Q Consensus 10 ~~~~~~~g~~v~l-~C~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~ 87 (258)
....+.+|+.+.+ .|.+. +.|.+.|.|+.+....... . ... ..+. .......+.+... +..|.
T Consensus 9 ~~~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~~~----~-~~~--------~~ng-T~TV~S~~~l~p~-r~d~G 73 (97)
T cd07704 9 PSLLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTSES----H-SQE--------HPNG-TTTVTSEYIWVPS-RHANG 73 (97)
T ss_pred CeeEeecCcceeEEEEEccCCccCCEeEEeCCCCCccce----e-eec--------CCCC-CEEEEEEEEEEeC-HHHCC
Confidence 3455678999999 99875 4788899999763221100 0 000 0000 1111224555555 66677
Q ss_pred eEEEEEEEeCCc
Q psy14532 88 GVYWCTATNKQG 99 (258)
Q Consensus 88 G~Y~C~~~~~~~ 99 (258)
-.++|.+.+...
T Consensus 74 ~~vtC~V~H~al 85 (97)
T cd07704 74 HPLTCVVSHPAL 85 (97)
T ss_pred cEEEEEEeCccc
Confidence 799999998754
No 377
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=96.59 E-value=0.0058 Score=44.58 Aligned_cols=49 Identities=24% Similarity=0.355 Sum_probs=41.0
Q ss_pred cCceEEEEe-CCcccCCCcceEEecCCeEEEEecccCCCCcEEEEEEEeCC
Q psy14532 140 PIESITWQK-GVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQ 189 (258)
Q Consensus 140 ~~~~i~W~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~ 189 (258)
..|.+.|.. ++..+.......+...|.|.+.+... .++|.|+|......
T Consensus 11 iDP~y~W~GP~g~~l~gn~~~nIT~TG~L~~~~F~e-smSG~YTCtLsYk~ 60 (271)
T PF07354_consen 11 IDPTYLWTGPNGKPLSGNSYVNITETGKLMFKNFQE-SMSGSYTCTLSYKP 60 (271)
T ss_pred CCCceEEECCCCcccCCCCeEEEccCceEEeecccc-ccCCceEEEEEEEe
Confidence 368899998 45666666678888999999999986 99999999998765
No 378
>PHA03269 envelope glycoprotein C; Provisional
Probab=96.58 E-value=0.022 Score=45.31 Aligned_cols=80 Identities=19% Similarity=0.265 Sum_probs=60.9
Q ss_pred eEEEEecccCCCCcEEEEEEEeCCC--CCccceEEEEeecCCccccCCCCCccCCCCeeeEEEEeccCCCC--ceeEEEE
Q psy14532 166 TLLIENVQKDHDRGVYWCTATNKQG--RSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPP--LTISWLK 241 (258)
Q Consensus 166 ~l~i~~~~~~~~~g~y~C~~~~~~~--~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~--~~~~W~~ 241 (258)
.|.|.++.. .+.|.|+=.+.+... ......+.+.+..+|.+.+.+. .+.+|+...-.|.+...+|. ..+.|+.
T Consensus 290 pL~I~slta-ATeGvY~Wrv~~~~n~t~~~~~~VtV~~yr~PsVsV~p~--PVL~Ge~YkAtC~vA~YYPp~SvrlrWf~ 366 (566)
T PHA03269 290 SLHILSLDA-STEGTYIWRVIHTANKNVINEHHITVMSYKRPNITVIGD--PVLLGNPYAAYCKVNKYYPPHSVIVKWTS 366 (566)
T ss_pred ceEEeeccc-ccCceEEEEEecCCCCceeeeeEEEEEEecCCCccccCC--ccccCCCceEEEEeeeecCCCceEEEEEe
Confidence 489999997 999999866654332 1234667777788887766543 46889999999999766775 5799999
Q ss_pred CCEeccc
Q psy14532 242 NGLPILS 248 (258)
Q Consensus 242 ~g~~l~~ 248 (258)
||.++..
T Consensus 367 ng~~V~~ 373 (566)
T PHA03269 367 NFGNIGK 373 (566)
T ss_pred CCcccCc
Confidence 9999985
No 379
>PHA03273 envelope glycoprotein C; Provisional
Probab=96.53 E-value=0.034 Score=44.06 Aligned_cols=80 Identities=24% Similarity=0.321 Sum_probs=59.4
Q ss_pred eEEEEecccCCCCcEEEEEEEeCCCC-CccceEEEEeecCCccccCCCCCccCCCCeeeEEEEeccCCCC--ceeEEEEC
Q psy14532 166 TLLIENVQKDHDRGVYWCTATNKQGR-SSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPP--LTISWLKN 242 (258)
Q Consensus 166 ~l~i~~~~~~~~~g~y~C~~~~~~~~-~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~--~~~~W~~~ 242 (258)
.|.|..+.. ...|.|+=.+.+..+. .....+.+....+|.+.+.+. .+..|+...-.|.+...+|. ..+.|+.|
T Consensus 199 ~LtI~slta-aTeGvYtWr~~~~n~t~~~~~~VtV~~yr~Psvsv~~~--PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf~d 275 (486)
T PHA03273 199 PLTIKSVDW-RTAGVYVWSLYAKNGTLVNSTSVTVSTYNAPLVDLSVH--PSLKGENYRAVCVVASYFPHSSVKLRWYKN 275 (486)
T ss_pred ceEEEecch-hhceEEEEEEecCCCceeeeeEEEEEEecCCcccccCC--ccccCCCceEEEEeeeecCCCceEEEEEeC
Confidence 389999987 9999998665443331 223455555677888776653 46889999999999766775 57999999
Q ss_pred CEeccc
Q psy14532 243 GLPILS 248 (258)
Q Consensus 243 g~~l~~ 248 (258)
|.++..
T Consensus 276 g~~V~~ 281 (486)
T PHA03273 276 AKEVDF 281 (486)
T ss_pred Ceeccc
Confidence 999983
No 380
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=96.46 E-value=0.31 Score=38.20 Aligned_cols=118 Identities=17% Similarity=0.233 Sum_probs=66.3
Q ss_pred eecCCcEEEEeeeCc---ccCceEEEEeCCcccC-----------------CCcceEE---------ecCCeEEEEeccc
Q psy14532 124 AIAGEPLYLGCPVAG---YPIESITWQKGVQQLP-----------------LNRRQKV---------FPNGTLLIENVQK 174 (258)
Q Consensus 124 ~~~g~~~~l~C~~~~---~~~~~i~W~~~~~~~~-----------------~~~~~~~---------~~~~~l~i~~~~~ 174 (258)
+..|..+.|.|.+.- .....+.|.--+-++. ....+.+ ..+++|+|.+++.
T Consensus 276 ~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIkka~I 355 (500)
T PHA02914 276 LEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIKKAHI 355 (500)
T ss_pred eccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEeeeEEE
Confidence 345888899997642 2345788875432211 1111111 1235799999997
Q ss_pred CCCCcEEEEEEEeCCCCCccceEEEEeecCCccccCCCCCccCCC-CeeeEEEEeccC-CCCceeEEEECCEecccc
Q psy14532 175 DHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSG-DRAGVQCLVTKG-DPPLTISWLKNGLPILSA 249 (258)
Q Consensus 175 ~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g-~~~~l~C~~~~~-~p~~~~~W~~~g~~l~~~ 249 (258)
+.+|-|+|++.....+..... -|.|..... -....+| ......|-+-.. ..++++.|.-+|......
T Consensus 356 -~N~GCY~~~a~~g~~~~ec~~-Cl~V~d~V~------f~W~~e~~n~T~V~Cyv~sy~~kp~si~wkvnGV~~~G~ 424 (500)
T PHA02914 356 -NNAGCYEAQAFMGKFKEECRH-CFKVADHVF------FKWNTEGDNETKVACYAAQYDMQPFSILWKSNGVSFGGE 424 (500)
T ss_pred -EcCCceEEEEecCcchhhhhh-heEeccEEE------EEEEeccCceEEEEEEEEecccCCceeEEEEccEEecCe
Confidence 999999999997643222221 122211000 0112233 345677988333 345689999888766543
No 381
>KOG1480|consensus
Probab=96.40 E-value=0.0017 Score=54.16 Aligned_cols=85 Identities=22% Similarity=0.375 Sum_probs=59.5
Q ss_pred eeceeeeecCCCceEEEEEEe-ecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCC
Q psy14532 7 YKFIQQTLQPGPPVSLKCIAT-GNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDH 85 (258)
Q Consensus 7 ~~~~~~~~~~g~~v~l~C~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~ 85 (258)
..+.-+.|.++..+.|.|... +.|...+.|++++..+... .... ...++.+.+..+ +..
T Consensus 134 ~~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~pd---~n~~----------------~~~d~~li~~~a-rls 193 (909)
T KOG1480|consen 134 QSPVGQEVQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDPD---ANVI----------------RASDHNLIISQA-RLS 193 (909)
T ss_pred cChhhheecccccccccccCcccchhhhhhccccCCCCCcc---ccch----------------hhhcCCccccch-hhh
Confidence 345556678899999999864 4677789999998766542 1111 123567899999 999
Q ss_pred CceEEEEEEEeCCcceeeceEEEEEe
Q psy14532 86 DRGVYWCTATNKQGRSSSQNVHISVT 111 (258)
Q Consensus 86 d~G~Y~C~~~~~~~~~~~~~~~l~v~ 111 (258)
|.|+|+|++.+..+......+.+.++
T Consensus 194 d~~nytc~a~ni~~~r~~~~~~v~vy 219 (909)
T KOG1480|consen 194 DSGNYTCEATNIVAKRKSDPATVQVY 219 (909)
T ss_pred hcccceeeeehhhccccccceEEEEE
Confidence 99999999998776554344444443
No 382
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=96.38 E-value=0.028 Score=35.94 Aligned_cols=66 Identities=14% Similarity=0.154 Sum_probs=41.7
Q ss_pred CCcceecCCcEEEEeeeCccc--C-ceEEEEeCCc-ccC--------------CCcceEEecC-----CeEEEEecccCC
Q psy14532 120 GNVSAIAGEPLYLGCPVAGYP--I-ESITWQKGVQ-QLP--------------LNRRQKVFPN-----GTLLIENVQKDH 176 (258)
Q Consensus 120 ~~~~~~~g~~~~l~C~~~~~~--~-~~i~W~~~~~-~~~--------------~~~~~~~~~~-----~~l~i~~~~~~~ 176 (258)
....+..|+.++|.|.+.+.. . -.+.|+|... .+. ...+.....+ -+|.|.+++. +
T Consensus 6 ~~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a-~ 84 (115)
T cd05721 6 SPVLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRA-N 84 (115)
T ss_pred CCeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCH-H
Confidence 345577888999999987643 3 4788988422 110 1111111111 1588889987 9
Q ss_pred CCcEEEEEEE
Q psy14532 177 DRGVYWCTAT 186 (258)
Q Consensus 177 ~~g~y~C~~~ 186 (258)
|.+.|.|..+
T Consensus 85 DTa~Y~Ca~e 94 (115)
T cd05721 85 QTDIYFCKIE 94 (115)
T ss_pred HCeEEEEEee
Confidence 9999999764
No 383
>PHA02633 hypothetical protein; Provisional
Probab=96.34 E-value=0.015 Score=32.26 Aligned_cols=41 Identities=22% Similarity=0.396 Sum_probs=28.5
Q ss_pred cCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEeecCC
Q psy14532 163 PNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPP 205 (258)
Q Consensus 163 ~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p 205 (258)
....|.|-++.. +|+|.|.|.+.|... ....++.|.|....
T Consensus 16 ~~~nLwilpa~~-sDSGiYiC~~rn~t~-c~~~si~l~V~~~~ 56 (63)
T PHA02633 16 NCNNMLILNPTQ-SDSGIYMCITKNETY-SDMMKFDLCICLRI 56 (63)
T ss_pred ccccEEEecccc-ccCcEEEEEEcCCCe-eEEEEEEEEEeecc
Confidence 344688888887 999999999997653 23345666665443
No 384
>PHA02982 hypothetical protein; Provisional
Probab=96.28 E-value=0.065 Score=37.83 Aligned_cols=119 Identities=13% Similarity=0.248 Sum_probs=65.8
Q ss_pred CcceecCCcEEEEeeeCc-ccCceEEEEeCCcc-cC----------C--------CcceEE---ecCCeEEEEecccCCC
Q psy14532 121 NVSAIAGEPLYLGCPVAG-YPIESITWQKGVQQ-LP----------L--------NRRQKV---FPNGTLLIENVQKDHD 177 (258)
Q Consensus 121 ~~~~~~g~~~~l~C~~~~-~~~~~i~W~~~~~~-~~----------~--------~~~~~~---~~~~~l~i~~~~~~~~ 177 (258)
++....+++|.|.|.... .......|..+... +. . ...+.. ...++|+|.++.. +.
T Consensus 33 dv~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i-~N 111 (251)
T PHA02982 33 DVNATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDP-QN 111 (251)
T ss_pred hhhccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCc-cc
Confidence 345667899999998643 33457889774321 11 0 001111 2345799999998 89
Q ss_pred CcEEEEEEEeCCCCCccceEEEEeecCCccccCCCCCccCCCCeeeEEEEeccCCCCceeEEEECCEec
Q psy14532 178 RGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISWLKNGLPI 246 (258)
Q Consensus 178 ~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~l 246 (258)
.|.|+|++....+....-..-|.++....+-. ...-.....++|-+ .+.-..-..|.-+|...
T Consensus 112 ~GCYtc~~ks~~~k~E~c~kCl~V~~~~V~~~-----W~e~nNeT~V~CyV-gS~~~dvp~W~V~GVvt 174 (251)
T PHA02982 112 LGCFTCEAKDAEGKEETCEKCLEIQKEDILYV-----VEEHNNETIITCFV-GSKHGDVPRFIVAGIVT 174 (251)
T ss_pred CCceEEEEecCCCchheeheeeeEecceEEEE-----EEecCCeEEEEEEE-EeccCCCccEEEeeEEe
Confidence 99999999986643332122233321111000 01123455778887 44333223888776643
No 385
>PHA03042 CD47-like protein; Provisional
Probab=96.25 E-value=0.033 Score=40.98 Aligned_cols=71 Identities=14% Similarity=0.247 Sum_probs=45.3
Q ss_pred cCCcEEEEeeeCcc-----cCceEEEEeCCcccCCCcceEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEE
Q psy14532 126 AGEPLYLGCPVAGY-----PIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHIS 200 (258)
Q Consensus 126 ~g~~~~l~C~~~~~-----~~~~i~W~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~ 200 (258)
=++++.+.|.+..- ....+.|..++..+-..+.. ...+|.+... +.-.|+|+|+|.+...+ ....+.|.
T Consensus 30 CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~t---n~aSL~~~f~--~~l~GNYTCEv~~l~n~-gk~~IeLk 103 (286)
T PHA03042 30 CNKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNT---NTSSLKFNFS--KNLSGNYTCEAINKFNK-IKNTIELQ 103 (286)
T ss_pred cCceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCC---cceEEEEecc--ccCCCceeEEEeecccC-ccEEEEEE
Confidence 35789999998652 34579999988765322211 1234655543 26789999999987653 23445554
Q ss_pred ee
Q psy14532 201 VT 202 (258)
Q Consensus 201 v~ 202 (258)
..
T Consensus 104 ~~ 105 (286)
T PHA03042 104 YV 105 (286)
T ss_pred EE
Confidence 43
No 386
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=96.21 E-value=0.01 Score=43.38 Aligned_cols=49 Identities=29% Similarity=0.556 Sum_probs=36.3
Q ss_pred CCCeEEEeeC-CEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEEEEEEeCC
Q psy14532 30 PTPHISWKLD-GYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQ 98 (258)
Q Consensus 30 ~~~~v~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~~~~~~ 98 (258)
..|.+.|... |..+... +.. .+..+|.|.+.+. +..++|.|+|.+....
T Consensus 11 iDP~y~W~GP~g~~l~gn---~~~----------------nIT~TG~L~~~~F-~esmSG~YTCtLsYk~ 60 (271)
T PF07354_consen 11 IDPTYLWTGPNGKPLSGN---SYV----------------NITETGKLMFKNF-QESMSGSYTCTLSYKP 60 (271)
T ss_pred CCCceEEECCCCcccCCC---CeE----------------EEccCceEEeecc-ccccCCceEEEEEEEe
Confidence 4678999975 4444433 222 3346889999999 9999999999998755
No 387
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=96.12 E-value=0.017 Score=37.80 Aligned_cols=74 Identities=14% Similarity=0.301 Sum_probs=40.1
Q ss_pred cCCcEEEEeeeCc-----ccCceEEEEeCCcccCC---Ccc-e--------EE----ecCCeEEEEecccCCCCcEEEEE
Q psy14532 126 AGEPLYLGCPVAG-----YPIESITWQKGVQQLPL---NRR-Q--------KV----FPNGTLLIENVQKDHDRGVYWCT 184 (258)
Q Consensus 126 ~g~~~~l~C~~~~-----~~~~~i~W~~~~~~~~~---~~~-~--------~~----~~~~~l~i~~~~~~~~~g~y~C~ 184 (258)
=++++.|.|.+.. .+...|.|..++..+-. ... . .+ ..+.+|.+.... .-.|+|+|+
T Consensus 26 CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~--a~~GnYTCe 103 (130)
T PF08204_consen 26 CNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSD--AVEGNYTCE 103 (130)
T ss_dssp T-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHH--HH-EEEEEE
T ss_pred cCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchh--ccccceEEE
Confidence 3588999999865 23457999887765311 000 0 00 122347777654 348999999
Q ss_pred EEeCCCCCccceEEEEee
Q psy14532 185 ATNKQGRSSSQNVHISVT 202 (258)
Q Consensus 185 ~~~~~~~~~~~~~~l~v~ 202 (258)
+..... ..+..+.|...
T Consensus 104 Vt~~~~-ege~~i~Lk~~ 120 (130)
T PF08204_consen 104 VTELSR-EGETTIELKYR 120 (130)
T ss_dssp EEETTE-EEEEEEEEEE-
T ss_pred EEecCC-CceEEEEEEEE
Confidence 988754 33455555543
No 388
>PHA03271 envelope glycoprotein C; Provisional
Probab=96.11 E-value=0.064 Score=42.01 Aligned_cols=83 Identities=23% Similarity=0.319 Sum_probs=57.0
Q ss_pred CeEEEEecccCCCCcEEEEEEEeCCCC-CccceEEEEeec-CCccccCCCCCccCCCCeeeEEEEeccCCCC--ceeEEE
Q psy14532 165 GTLLIENVQKDHDRGVYWCTATNKQGR-SSSQNVHISVTV-PPKIAPFEFQPDLHSGDRAGVQCLVTKGDPP--LTISWL 240 (258)
Q Consensus 165 ~~l~i~~~~~~~~~g~y~C~~~~~~~~-~~~~~~~l~v~~-~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~--~~~~W~ 240 (258)
-.+.|.++.. .++|.|+-...+...+ ...+.+.+.+.. +|.+.+.+. .+..|+...-.|.+...+|+ ..+.|+
T Consensus 207 m~v~I~svD~-~t~Gy~~v~~~d~~N~~i~e~~~~~~v~~RPPsVsV~a~--PVL~Ge~YkAtC~vAnYYPP~SvrlrWf 283 (490)
T PHA03271 207 MGVEIRNVDY-ADNGYIQVIMRDPFNRPLLDKHIYIRVCQRPASVDVLAP--PVLSGENYKASCIVRHFYPPGSVYVSWR 283 (490)
T ss_pred eeEEEEEeec-ccceEEEEEecCCCCCccccceEEEEEEecCCCccccCC--ccccCCCceEEEEeeeecCCCceEEEEE
Confidence 3589999997 8999775444443332 223455555544 555665543 36789999999999766775 579999
Q ss_pred ECCEeccccc
Q psy14532 241 KNGLPILSAM 250 (258)
Q Consensus 241 ~~g~~l~~~~ 250 (258)
.||..+....
T Consensus 284 ~nG~~V~~~~ 293 (490)
T PHA03271 284 QNGNIATPRK 293 (490)
T ss_pred eCCccccCcc
Confidence 9999886544
No 389
>KOG4597|consensus
Probab=96.08 E-value=0.0092 Score=47.20 Aligned_cols=91 Identities=18% Similarity=0.114 Sum_probs=62.1
Q ss_pred ceeeceeeeecCCCceEEEEEEeecCCCeEEEeeC---CEeCcCCccccceecccceeeccccccceeeeeCCcEEEeec
Q psy14532 5 LIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLD---GYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENV 81 (258)
Q Consensus 5 ~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~ 81 (258)
+..-+....+..|++..++|-+.|.+.+.|+|.+- ...+... .....+ +-.......|.|-+.
T Consensus 199 l~~cpa~w~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~---~nq~~e-----------~p~vtstcql~ic~e 264 (560)
T KOG4597|consen 199 LVDCPAEWFVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMR---PNQTVE-----------NPVVTSTCQLVICNE 264 (560)
T ss_pred cccCcchhhcccchhhcccccccCCcCceeeeehhhccccceeec---CccccC-----------CcceeeeeeEEEcch
Confidence 44456667789999999999999999999999862 2221111 111111 112233456899999
Q ss_pred ccCCCceEEEEEEEeCCcceeeceEEEEEe
Q psy14532 82 QKDHDRGVYWCTATNKQGRSSSQNVHISVT 111 (258)
Q Consensus 82 ~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~ 111 (258)
...|+|.|+|.+.+..|... ..+.+.+.
T Consensus 265 -wq~~a~w~tCs~rcg~g~~~-rdv~c~s~ 292 (560)
T KOG4597|consen 265 -WQADAGWYTCSARCGAGFLR-RDVPCSSV 292 (560)
T ss_pred -hhcCCCceeeccccccceee-ccceeeee
Confidence 99999999999999888766 55555443
No 390
>PHA03042 CD47-like protein; Provisional
Probab=96.08 E-value=0.036 Score=40.78 Aligned_cols=71 Identities=17% Similarity=0.299 Sum_probs=44.1
Q ss_pred CCCceEEEEEEeec-----CCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEE
Q psy14532 16 PGPPVSLKCIATGN-----PTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVY 90 (258)
Q Consensus 16 ~g~~v~l~C~~~~~-----~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y 90 (258)
=++++.+.|.+... ....+.|..+++.+...... ..++|.+.. ..+-.|+|
T Consensus 30 CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~t----------------------n~aSL~~~f--~~~l~GNY 85 (286)
T PHA03042 30 CNKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNT----------------------NTSSLKFNF--SKNLSGNY 85 (286)
T ss_pred cCceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCC----------------------cceEEEEec--cccCCCce
Confidence 37899999998642 24479999988766433100 013455443 34458999
Q ss_pred EEEEEeCCcceeeceEEEEEe
Q psy14532 91 WCTATNKQGRSSSQNVHISVT 111 (258)
Q Consensus 91 ~C~~~~~~~~~~~~~~~l~v~ 111 (258)
+|.+.+...... ..+.|+-.
T Consensus 86 TCEv~~l~n~gk-~~IeLk~~ 105 (286)
T PHA03042 86 TCEAINKFNKIK-NTIELQYV 105 (286)
T ss_pred eEEEeecccCcc-EEEEEEEE
Confidence 999987654443 44455544
No 391
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=95.33 E-value=3.5 Score=41.23 Aligned_cols=191 Identities=12% Similarity=0.078 Sum_probs=108.6
Q ss_pred eceeeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCc
Q psy14532 8 KFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDR 87 (258)
Q Consensus 8 ~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~ 87 (258)
......+..|+.|.|.-.........+.|..++..-... .+.++. . +-...
T Consensus 1703 ~aS~~~aavn~~V~fs~~lt~GS~vty~W~~gdG~s~~~-------------------------s~p~~t-H---tf~~~ 1753 (2740)
T TIGR00864 1703 QASDNPAAVNALINLSAELAEGSGLQYRWFLEEGDDLET-------------------------SEPFMS-H---SFPSA 1753 (2740)
T ss_pred eccCCcccCCCeEEEEEEecCCCCcEEEEEECCCCCccc-------------------------CCCceE-E---EccCC
Confidence 334455678999999877666667789998754211100 000110 0 23456
Q ss_pred eEEEEEEE--eCCcceeeceEEEEEecCCe---eccCC--C-cceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcce
Q psy14532 88 GVYWCTAT--NKQGRSSSQNVHISVTGAPF---VRPMG--N-VSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQ 159 (258)
Q Consensus 88 G~Y~C~~~--~~~~~~~~~~~~l~v~~~~~---~~~~~--~-~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~ 159 (258)
|.|...+. |..+... .++.+.|..+.. +.... . ..+..|..+.+.-.+.......+.|..++..-.....
T Consensus 1754 G~y~VtVta~N~vss~~-~s~~V~VqepV~GL~i~~~~~~~~~~~~ag~~v~F~a~vstGsnVsw~W~f~~g~s~~gk~- 1831 (2740)
T TIGR00864 1754 GLHLVTMKAFNELGSAN-ASEEVDVQEPISGLKIRAADAGEQNFFAADSSVCFQGELATGTNVSWCWAIDGGSSKMGKH- 1831 (2740)
T ss_pred ceEEEEEEEEccccccc-eeEEEEEEeccccceEecCCCCcccceecCcEEEEEEEccCCCeeEEEEEeCCCCccccce-
Confidence 88877654 5555544 566777765531 11111 1 1345567777766653333446777776543221111
Q ss_pred EEecCCeEEEEecccCCCCcEEEEE--EEeCCCCCccceEEEEeecCCc-cccCCCCCccCCCCeeeEEEEeccCCCCce
Q psy14532 160 KVFPNGTLLIENVQKDHDRGVYWCT--ATNKQGRSSSQNVHISVTVPPK-IAPFEFQPDLHSGDRAGVQCLVTKGDPPLT 236 (258)
Q Consensus 160 ~~~~~~~l~i~~~~~~~~~g~y~C~--~~~~~~~~~~~~~~l~v~~~p~-~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~ 236 (258)
.. ... .+.|.|+-. |.|..+ ....+..+.|+.+.. +........+..|+.++|.+.+. ..+...
T Consensus 1832 -------v~---~Tf-~~aG~ytV~L~AsN~vs-~~~~s~~~~VQe~I~~L~L~as~~~~~~n~~v~fsa~l~-~GS~Vt 1898 (2740)
T TIGR00864 1832 -------AC---MTF-PDAGTFAIRLNASNAVS-GKSASREFFAEEPIFGLELKASKKIAAIGEKVEFQILLA-AGSAVN 1898 (2740)
T ss_pred -------eE---Eec-CCCeEEEEEEEEEcccC-cceeeeeEEEEEecceEEEecccccccCCCEEEEEEEec-CCCceE
Confidence 11 234 678888654 556654 334555667776653 33334445677899999999995 444789
Q ss_pred eEEEEC
Q psy14532 237 ISWLKN 242 (258)
Q Consensus 237 ~~W~~~ 242 (258)
+.|.++
T Consensus 1899 f~w~fG 1904 (2740)
T TIGR00864 1899 FRLQIG 1904 (2740)
T ss_pred EEEEeC
Confidence 999875
No 392
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=95.23 E-value=0.23 Score=38.32 Aligned_cols=21 Identities=19% Similarity=0.428 Sum_probs=17.5
Q ss_pred ceEEEEEEeec-C-CCeEEEeeC
Q psy14532 19 PVSLKCIATGN-P-TPHISWKLD 39 (258)
Q Consensus 19 ~v~l~C~~~~~-~-~~~v~W~~~ 39 (258)
.++|+|.+.|+ | ...+.|.|+
T Consensus 216 ~~tL~C~A~GFYP~~I~v~W~kd 238 (338)
T PHA02865 216 NTTLFCTFDSHYPSSVAAKWYNS 238 (338)
T ss_pred CceEEEEEEeEeCCccEEEEEec
Confidence 58999999996 3 348899999
No 393
>KOG0613|consensus
Probab=95.20 E-value=0.17 Score=45.49 Aligned_cols=167 Identities=15% Similarity=0.073 Sum_probs=91.9
Q ss_pred cEEEeecccCCCceEEEEEEEeCCcceeeceEEEEEec----------------CC----eeccCCCcceecCCcEEEEe
Q psy14532 75 TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTG----------------AP----FVRPMGNVSAIAGEPLYLGC 134 (258)
Q Consensus 75 ~l~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~----------------~~----~~~~~~~~~~~~g~~~~l~C 134 (258)
+..|.+. ...+.+.|+|...+..+... ..+...+.. ++ .......+....+..+.+.|
T Consensus 279 t~~i~~~-~~~~~~s~t~~~~~~~~q~~-~~v~~~~~i~~~~~~p~~~~~aaa~~~~~~v~~~~~~~v~a~d~~~v~m~~ 356 (1205)
T KOG0613|consen 279 TKTIQND-GPEPELSWTVADKRQGCQDR-FKVTEEAPIGKGKPGPESLQAAAARPPEVPVGLVRNLSVTARDNTLVEMPT 356 (1205)
T ss_pred ccccccc-CCccccceeeecccCCcccc-eeeeEEeeccccccCchhhhhhccCCccccccccccceeccccCcceeecc
Confidence 4566676 77788888888877765544 222111110 00 00112233445567789999
Q ss_pred eeCcccCc-eEEEEeCCcccCCCcceEE-----ecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEeecCCccc
Q psy14532 135 PVAGYPIE-SITWQKGVQQLPLNRRQKV-----FPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIA 208 (258)
Q Consensus 135 ~~~~~~~~-~i~W~~~~~~~~~~~~~~~-----~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~~ 208 (258)
...+.+.+ .+.|+++.........-.. ..+..+.+..+.. .+.+.|.|.+.|..+........+.....+...
T Consensus 357 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ts~~~~~~~~~~-~e~~~~~~~a~n~~g~~~~~~~~~vs~~~~gt~ 435 (1205)
T KOG0613|consen 357 ALSGTQKPDEAQGYHGEEVSSESLGALPCPVGTVTSHTYTIKDAGP-GEGYFTRVPAVNKGGTEQTIAESTVSEEMPGTQ 435 (1205)
T ss_pred cccCCcCCchheeecccccccccccccccccccccCcchhhhhcCc-ccccccccceeccCCcccccchhhcccccCCCC
Confidence 98887766 4999987655443321111 1233466666766 888999999999887433222222222222111
Q ss_pred cC----CCCCc--cCCCCeeeEEEEeccCCCC--ceeEEEECCEe
Q psy14532 209 PF----EFQPD--LHSGDRAGVQCLVTKGDPP--LTISWLKNGLP 245 (258)
Q Consensus 209 ~~----~~~~~--~~~g~~~~l~C~~~~~~p~--~~~~W~~~g~~ 245 (258)
.. ....+ +..-+.+.+.|.+ .+.+. ..++|++++-.
T Consensus 436 ~~~~kk~~~~t~~L~~~~~i~~~~~~-~s~~~~~~~~tt~~~~~~ 479 (1205)
T KOG0613|consen 436 PPKFKKDVSTTDLLTVKDEITVRTPD-SSTSMPMTTVTTIKDGLP 479 (1205)
T ss_pred CccccccccccccccCCcccccccCC-CCccccceeEeeccCCcc
Confidence 11 11122 3334788888888 56664 45566665443
No 394
>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ
Probab=94.70 E-value=0.32 Score=29.83 Aligned_cols=69 Identities=14% Similarity=0.267 Sum_probs=39.2
Q ss_pred cEEEEeee-CcccCceEEEEeCCcccCCCcceEEecCCe------EEEEecccCCCCcEEEEEEEeCCCCCccceEEEE
Q psy14532 129 PLYLGCPV-AGYPIESITWQKGVQQLPLNRRQKVFPNGT------LLIENVQKDHDRGVYWCTATNKQGRSSSQNVHIS 200 (258)
Q Consensus 129 ~~~l~C~~-~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~------l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~ 200 (258)
.+.-.|.+ .|+|++.|+|.-+-..-. ........+++ +.+.+... .|....+|.+.+... ....++.|+
T Consensus 22 v~VA~CiSa~GrPpa~ItW~t~l~G~~-etq~~~~~~GT~TV~S~y~lVPs~~-~~gk~lTCvV~h~~~-~~~~~~~L~ 97 (98)
T cd05890 22 MLVATCVSANGKPPSVVRWDTRLKGEA-EFQEIRNQNGTVTVISRYRLVPSRE-AHKQKLTCIVNYRND-RFTDSVTLN 97 (98)
T ss_pred EEEEEEEcCCCcCCcEeEEEccCCCce-eeeeeCCCCCCEEEEEEEEEeECHH-HcCCEeEEEEEeccc-cccccEEec
Confidence 45677884 789999999975321111 11111123332 44445554 788899999998632 333444443
No 395
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=94.18 E-value=0.68 Score=27.68 Aligned_cols=21 Identities=24% Similarity=0.411 Sum_probs=16.6
Q ss_pred cEEEeecccCCCceEEEEEEEe
Q psy14532 75 TLLIENVQKDHDRGVYWCTATN 96 (258)
Q Consensus 75 ~l~i~~~~~~~d~G~Y~C~~~~ 96 (258)
.+...+. ...|+|.+.|.|..
T Consensus 44 ~~~~~~~-~~~d~G~w~C~a~~ 64 (80)
T PF05790_consen 44 LVSTFTP-TTEDSGTWVCTASD 64 (80)
T ss_dssp EEEEESB-TCGGSEEEEEEEEE
T ss_pred EEEEecC-CCCCCEEEEEEEcC
Confidence 4556777 78899999999953
No 396
>KOG4597|consensus
Probab=94.07 E-value=0.19 Score=40.26 Aligned_cols=79 Identities=22% Similarity=0.204 Sum_probs=53.0
Q ss_pred CcceecCCcEEEEeeeCcccCceEEEEe---CCcccCCCc-----ceEEecCCeEEEEecccCCCCcEEEEEEEeCCCCC
Q psy14532 121 NVSAIAGEPLYLGCPVAGYPIESITWQK---GVQQLPLNR-----RQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRS 192 (258)
Q Consensus 121 ~~~~~~g~~~~l~C~~~~~~~~~i~W~~---~~~~~~~~~-----~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~ 192 (258)
...+..+++..++|.+.|.+.+.|+|.+ ++..+.... +.....-..|.|-+... .|+|.|+|.+.+..+.
T Consensus 205 ~w~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~~nq~~e~p~vtstcql~ic~ewq-~~a~w~tCs~rcg~g~- 282 (560)
T KOG4597|consen 205 EWFVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMRPNQTVENPVVTSTCQLVICNEWQ-ADAGWYTCSARCGAGF- 282 (560)
T ss_pred hhhcccchhhcccccccCCcCceeeeehhhccccceeecCccccCCcceeeeeeEEEcchhh-cCCCceeeccccccce-
Confidence 3456678999999999999999999976 232221111 11122334578888876 9999999999998874
Q ss_pred ccceEEEEe
Q psy14532 193 SSQNVHISV 201 (258)
Q Consensus 193 ~~~~~~l~v 201 (258)
..+.+.+.+
T Consensus 283 ~~rdv~c~s 291 (560)
T KOG4597|consen 283 LRRDVPCSS 291 (560)
T ss_pred eeccceeee
Confidence 334444443
No 397
>PHA03052 Hypothetical protein; Provisional
Probab=93.76 E-value=0.24 Score=28.05 Aligned_cols=38 Identities=18% Similarity=0.309 Sum_probs=29.2
Q ss_pred CCCccCCCCeeeEEEEeccCCCC--ceeEEEECCEecccc
Q psy14532 212 FQPDLHSGDRAGVQCLVTKGDPP--LTISWLKNGLPILSA 249 (258)
Q Consensus 212 ~~~~~~~g~~~~l~C~~~~~~p~--~~~~W~~~g~~l~~~ 249 (258)
....+..|..++|.|.+.-+.+. +.+.|.-|+..+...
T Consensus 5 ~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~e~~ 44 (69)
T PHA03052 5 EGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYYEED 44 (69)
T ss_pred ccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEEecc
Confidence 34567789999999999756554 578999999999433
No 398
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=93.30 E-value=0.33 Score=37.52 Aligned_cols=21 Identities=24% Similarity=0.513 Sum_probs=17.3
Q ss_pred cEEEEeeeCc-cc-CceEEEEeC
Q psy14532 129 PLYLGCPVAG-YP-IESITWQKG 149 (258)
Q Consensus 129 ~~~l~C~~~~-~~-~~~i~W~~~ 149 (258)
.++|.|-+.| +| ...++|.++
T Consensus 216 ~~tL~C~A~GFYP~~I~v~W~kd 238 (338)
T PHA02865 216 NTTLFCTFDSHYPSSVAAKWYNS 238 (338)
T ss_pred CceEEEEEEeEeCCccEEEEEec
Confidence 5799999998 45 348899998
No 399
>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []. EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.
Probab=93.05 E-value=2.5 Score=30.50 Aligned_cols=141 Identities=19% Similarity=0.261 Sum_probs=68.4
Q ss_pred CeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEEEEEEeCCcceeeceEE----
Q psy14532 32 PHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVH---- 107 (258)
Q Consensus 32 ~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~~---- 107 (258)
..+.|+.+|.++............. . ......++|.+.........-..+|.+.-.........+.
T Consensus 7 ~~~~Wf~dg~~v~~~~~~~~~~~~~--------~--G~~s~vStl~~~~~~~~~~pp~i~C~v~W~r~~v~~~r~~a~~~ 76 (211)
T PF02124_consen 7 VRFRWFEDGNPVEPRFIRDSSQVWS--------D--GLFSRVSTLTLPGNSADSPPPSIRCQVTWYRDSVSETRFNATAT 76 (211)
T ss_pred EEEEEEECCEeCCccceeeEEEEec--------C--CcEEEEEEEEecCCCCCCCCCcceEEEEEccCCCeeeEeecccc
Confidence 3789999998877442222211110 0 0122233455533213334557899987544433212222
Q ss_pred EEEecCCeeccCCCcceecCCcEEEEeeeCccc--CceEEEEeCCcccCCCcceEE-----ecCCeEEEEeccc-CCCCc
Q psy14532 108 ISVTGAPFVRPMGNVSAIAGEPLYLGCPVAGYP--IESITWQKGVQQLPLNRRQKV-----FPNGTLLIENVQK-DHDRG 179 (258)
Q Consensus 108 l~v~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~--~~~i~W~~~~~~~~~~~~~~~-----~~~~~l~i~~~~~-~~~~g 179 (258)
-.|+.+|.+. +....| ...|.+.-.| ...+.|.-++........... ...+...|.+... ....|
T Consensus 77 P~Vy~~P~vs----v~F~~g---~AVC~A~CVP~~~v~l~W~v~d~~~~~~~~~~~~g~C~~~pglvnirs~~pls~~~~ 149 (211)
T PF02124_consen 77 PSVYPKPRVS----VRFEDG---YAVCTARCVPRGNVTLRWSVGDDPSPAPAATEITGVCAEHPGLVNIRSRRPLSDEDG 149 (211)
T ss_pred cceecCCEEE----EEecCC---EEEEEcceeeCCCeEEEEEECCccCCCCCceeecCcccCCcceeEeecccCCCccCC
Confidence 2222333221 223223 4568776655 268999987765422221111 1223455544332 13445
Q ss_pred --EEEEEEEeCC
Q psy14532 180 --VYWCTATNKQ 189 (258)
Q Consensus 180 --~y~C~~~~~~ 189 (258)
.|+|.+...-
T Consensus 150 ~~~YtC~l~GYP 161 (211)
T PF02124_consen 150 PVEYTCRLIGYP 161 (211)
T ss_pred ceeEEEEEeeCC
Confidence 8999998653
No 400
>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily. They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.
Probab=92.67 E-value=1.5 Score=26.96 Aligned_cols=82 Identities=20% Similarity=0.272 Sum_probs=48.6
Q ss_pred ceeeceeeeecCCCceEEEEEEeecCCCeEEEeeC--CEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecc
Q psy14532 5 LIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLD--GYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQ 82 (258)
Q Consensus 5 ~~~~~~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~ 82 (258)
+...|....+..|+++.+.|...-.....+-|.-. ...+..+ . .=..+.+.++
T Consensus 6 v~v~P~~~vV~~G~Sv~VNCStsC~~p~~~GLET~L~k~~~~~g----~--------------------~W~~f~LsnV- 60 (91)
T PF03921_consen 6 VRVSPEEPVVPPGGSVWVNCSTSCPQPEKIGLETSLSKTELDSG----P--------------------QWKAFQLSNV- 60 (91)
T ss_dssp EEEESSEEEEETTEEEEEEEEESSSS-SEEEEESSSEEEEEEEE----T--------------------TEEEEEEEEE-
T ss_pred EEEECCccEECCCCCEEEEEcCCCCCCCcceEEEecCCcccCCC----C--------------------cEEEEEEEcc-
Confidence 45678889999999999999875322224555422 1111110 0 0013567788
Q ss_pred cCCCceEEEEEEEeCCcceeeceEEEEEecCC
Q psy14532 83 KDHDRGVYWCTATNKQGRSSSQNVHISVTGAP 114 (258)
Q Consensus 83 ~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~ 114 (258)
+. | ....|.+.-. +.....++.++|+.+|
T Consensus 61 ~~-d-s~~~C~~~C~-g~Q~~~~~~ItVY~~P 89 (91)
T PF03921_consen 61 TE-D-SSPLCFFNCS-GEQSSASANITVYKPP 89 (91)
T ss_dssp -S-C-EEEEEEEEET-TEEEEEEEEEEEEB--
T ss_pred cc-C-CeEEEEEEcC-CeEEEeEEeeEEeCCC
Confidence 54 4 5667998865 4444488899998776
No 401
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=92.27 E-value=0.38 Score=30.22 Aligned_cols=39 Identities=36% Similarity=0.548 Sum_probs=28.9
Q ss_pred ecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEe
Q psy14532 162 FPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISV 201 (258)
Q Consensus 162 ~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v 201 (258)
..+..|.|+.++. .|+|.|.-++.+..|......+.+.|
T Consensus 68 ~enlaLlIkaAq~-qDSG~Y~LEvT~~sG~V~~~~FqVsV 106 (108)
T PF11465_consen 68 SENLALLIKAAQP-QDSGLYCLEVTNESGKVCTKNFQVSV 106 (108)
T ss_dssp TTTTEEEESS-SG-GG-EEEEEEEEETTSCEEEEEEEEEE
T ss_pred ccCceEEEeecCc-ccCceEEEEEEcCCCcEEEEEEEEEe
Confidence 3566899999998 99999999999988865555555554
No 402
>PHA03052 Hypothetical protein; Provisional
Probab=91.93 E-value=0.63 Score=26.39 Aligned_cols=35 Identities=11% Similarity=0.223 Sum_probs=27.2
Q ss_pred ceeeeecCCCceEEEEEEee---cCCCeEEEeeCCEeC
Q psy14532 9 FIQQTLQPGPPVSLKCIATG---NPTPHISWKLDGYPL 43 (258)
Q Consensus 9 ~~~~~~~~g~~v~l~C~~~~---~~~~~v~W~~~~~~~ 43 (258)
|..+.+..|..++|.|.+.- .....|.|.-++..+
T Consensus 4 P~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~ 41 (69)
T PHA03052 4 PEGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYY 41 (69)
T ss_pred CccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEE
Confidence 35677889999999999852 235578999888776
No 403
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=90.92 E-value=1.9 Score=26.45 Aligned_cols=39 Identities=26% Similarity=0.522 Sum_probs=27.9
Q ss_pred eceeeeecCCCceEEEEEEeec-----CCCeEEEeeCCEeCcCC
Q psy14532 8 KFIQQTLQPGPPVSLKCIATGN-----PTPHISWKLDGYPLAGD 46 (258)
Q Consensus 8 ~~~~~~~~~g~~v~l~C~~~~~-----~~~~v~W~~~~~~~~~~ 46 (258)
.+....+..|++++..|..... ....+.|..++..++..
T Consensus 9 ~p~~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~~ 52 (89)
T PF06328_consen 9 SPPSPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPGS 52 (89)
T ss_dssp ECSSSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCESTCG
T ss_pred ecCCCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECChh
Confidence 4566778999999999997532 34579999888766654
No 404
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=90.92 E-value=2.2 Score=25.48 Aligned_cols=52 Identities=13% Similarity=0.179 Sum_probs=28.6
Q ss_pred CceEEEEeCCcccCCCcceEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEE
Q psy14532 141 IESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHIS 200 (258)
Q Consensus 141 ~~~i~W~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~ 200 (258)
.+.+.|+..+.... .....+.+..... .|.|.+.|.|...........+.|.
T Consensus 26 ~~~~~l~~~~~k~~-------~~~~~~~~~~~~~-~d~G~w~C~a~~~~~k~~~s~~~i~ 77 (80)
T PF05790_consen 26 KPSLFLENPGKKSL-------ETKKLVSTFTPTT-EDSGTWVCTASDNEPKERESKIEIL 77 (80)
T ss_dssp CEEEEEECSSCEEE-------EESSEEEEESBTC-GGSEEEEEEEEECTTEEEEEEEEEE
T ss_pred ChhheeeccCcccc-------ccceEEEEecCCC-CCCEEEEEEEcCCceEEEEEEEEEE
Confidence 45677766544321 1233445555655 8999999999643332333333343
No 405
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=90.80 E-value=2.5 Score=25.80 Aligned_cols=72 Identities=22% Similarity=0.234 Sum_probs=42.0
Q ss_pred CCcceeeceeeeecCC----CceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEE
Q psy14532 2 HPQLIYKFIQQTLQPG----PPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLL 77 (258)
Q Consensus 2 ~p~~~~~~~~~~~~~g----~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 77 (258)
+|+|........+... +...|.+.+.+. ...+.|+-||..+..... ...+.
T Consensus 10 ~l~I~~P~~g~~~~~~~~~~~~~~l~l~a~~~-~~~~~W~vdg~~~g~~~~------------------------~~~~~ 64 (89)
T PF06832_consen 10 PLRITSPPDGAVLALDPGIPERQPLVLKAAGG-RGPVYWFVDGEPLGTTQP------------------------GHQLF 64 (89)
T ss_pred CCEEEecCCCCEEEeCCCCCccceEEEEEeCC-CCcEEEEECCEEcccCCC------------------------CCeEE
Confidence 4555544443333222 245566666655 459999999998833311 11232
Q ss_pred EeecccCCCceEEEEEEEeCCccee
Q psy14532 78 IENVQKDHDRGVYWCTATNKQGRSS 102 (258)
Q Consensus 78 i~~~~~~~d~G~Y~C~~~~~~~~~~ 102 (258)
+ .....|.|+-.+....|...
T Consensus 65 ~----~~~~~G~h~l~vvD~~G~~~ 85 (89)
T PF06832_consen 65 W----QPDRPGEHTLTVVDAQGRSA 85 (89)
T ss_pred e----CCCCCeeEEEEEEcCCCCEE
Confidence 2 34467999998887777554
No 406
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=90.56 E-value=1.8 Score=26.50 Aligned_cols=53 Identities=11% Similarity=0.262 Sum_probs=32.4
Q ss_pred CCCcceecCCcEEEEeeeCc-----ccCceEEEEeCCcccCCCcceEEecCC--eEEEEec
Q psy14532 119 MGNVSAIAGEPLYLGCPVAG-----YPIESITWQKGVQQLPLNRRQKVFPNG--TLLIENV 172 (258)
Q Consensus 119 ~~~~~~~~g~~~~l~C~~~~-----~~~~~i~W~~~~~~~~~~~~~~~~~~~--~l~i~~~ 172 (258)
++...+..|+.++..|.... .....|.|..++..++......+ .+. .+++.+.
T Consensus 10 p~~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~~qy~~i-n~~~SsVT~~~~ 69 (89)
T PF06328_consen 10 PPSPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPGSQYRVI-NDTVSSVTLPNL 69 (89)
T ss_dssp CSSSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCESTCGCEEEE-STTEEEEEESS-
T ss_pred cCCCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECChhHccee-CCeEEEEEEccC
Confidence 44566889999999998742 24568999998886655443333 333 3444443
No 407
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=90.29 E-value=23 Score=36.11 Aligned_cols=202 Identities=12% Similarity=0.085 Sum_probs=107.5
Q ss_pred eeeeecCCCceEEEEEEeecCCCeEEEeeCCE-eCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCce
Q psy14532 10 IQQTLQPGPPVSLKCIATGNPTPHISWKLDGY-PLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRG 88 (258)
Q Consensus 10 ~~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G 88 (258)
....+..|+.++|.+.+...+...+.|..++. ..... .+..... .-...|
T Consensus 1875 s~~~~~~n~~v~fsa~l~~GS~Vtf~w~fGdgs~~~~t--------------------------~~~t~~H---sY~~~G 1925 (2740)
T TIGR00864 1875 SKKIAAIGEKVEFQILLAAGSAVNFRLQIGGAAPEVLQ--------------------------PGPRFSH---SFPRVD 1925 (2740)
T ss_pred ccccccCCCEEEEEEEecCCCceEEEEEeCCCCceeec--------------------------CCCeEEe---ecCCCC
Confidence 44467799999999988776777889987642 21110 0001111 122345
Q ss_pred EEEEEE--EeCCcceeeceEEEEEecCC-eeccCC--CcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcceEEec
Q psy14532 89 VYWCTA--TNKQGRSSSQNVHISVTGAP-FVRPMG--NVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFP 163 (258)
Q Consensus 89 ~Y~C~~--~~~~~~~~~~~~~l~v~~~~-~~~~~~--~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~ 163 (258)
.|...+ .|..+... ..+.+.|..+. .+.... ...+..|+...+.-.+....+..+.|+.+-..+..... .+..
T Consensus 1926 ~Y~VtV~A~N~Vs~~~-a~~~V~Vle~V~gL~I~~~c~~~~~~g~~~tF~A~v~~g~~V~f~W~f~~~~~~g~~~-~~~~ 2003 (2740)
T TIGR00864 1926 DHMVNLRAKNEVSCAQ-ANLHIEVLEAVRGLQIPDCCAAGIATGEEKNFTANVQRGKPVAFAWTFDLHHLHGDSL-VIHM 2003 (2740)
T ss_pred cEEEEEEEEeccceee-eeEEEEEEEeccceEecCCcccceecCceEEEEEEEecCCceEEEEEeeecccCCCcc-eeec
Confidence 565544 44444433 55555555442 111111 11257788888888875545567999865322221111 1111
Q ss_pred CCeEEEEecccCCCCcEEEE--EEEeCCCCCccceEEEEeecCCccccC-CCCCccCCCCeeeEEEEeccCCCCceeEEE
Q psy14532 164 NGTLLIENVQKDHDRGVYWC--TATNKQGRSSSQNVHISVTVPPKIAPF-EFQPDLHSGDRAGVQCLVTKGDPPLTISWL 240 (258)
Q Consensus 164 ~~~l~i~~~~~~~~~g~y~C--~~~~~~~~~~~~~~~l~v~~~p~~~~~-~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~ 240 (258)
...... .. ...|.|.- +|.|..+. ......+.|+.+...... ........+..+.|.|.+..+.-...+.|-
T Consensus 2004 G~~vty---~~-~~~G~~~I~v~A~N~l~s-~n~t~~i~VQ~~i~~~~L~~~p~~~~~n~~v~f~~~~~~~~~~v~~~WD 2078 (2740)
T TIGR00864 2004 GKDVSY---TA-EAAGLLEIQLGAFNALGA-ENITLQLEAQDALMDAALQAGPQDCFTNKMAQFEAATSPKPNFMACHWD 2078 (2740)
T ss_pred CCceEE---cc-CCCcEEEEEEEEEcccCc-ccccEEEEEEeheeeEEEeecCcceecCceEEEEEEEccCCCcEEEEEE
Confidence 111111 12 46787765 45566653 234445555554432221 123345668899999999433334789998
Q ss_pred EC-CEecc
Q psy14532 241 KN-GLPIL 247 (258)
Q Consensus 241 ~~-g~~l~ 247 (258)
++ |....
T Consensus 2079 FGDGt~~~ 2086 (2740)
T TIGR00864 2079 FGDGSAGQ 2086 (2740)
T ss_pred ecCCCCcc
Confidence 84 65543
No 408
>PHA03112 IL-18 binding protein; Provisional
Probab=87.27 E-value=5.2 Score=26.74 Aligned_cols=28 Identities=18% Similarity=0.427 Sum_probs=21.2
Q ss_pred eecCCCceEEEEEEeec-CC-CeEEEeeCC
Q psy14532 13 TLQPGPPVSLKCIATGN-PT-PHISWKLDG 40 (258)
Q Consensus 13 ~~~~g~~v~l~C~~~~~-~~-~~v~W~~~~ 40 (258)
.-.+|++++|+|.+-+. |. ..+.|..++
T Consensus 34 p~k~~~~vvL~C~gcs~fp~fS~lYWl~gn 63 (141)
T PHA03112 34 PTKETEKVVLECRGCSYFPKFSYVYWLIGN 63 (141)
T ss_pred ccCCCCEEEEEEECccCCCCceEEEEEcCC
Confidence 34679999999998754 43 478999764
No 409
>PHA03240 envelope glycoprotein M; Provisional
Probab=87.14 E-value=1.7 Score=31.00 Aligned_cols=29 Identities=17% Similarity=0.171 Sum_probs=21.2
Q ss_pred eeeeecCCCceEEEEEEeecCCCeEEEee
Q psy14532 10 IQQTLQPGPPVSLKCIATGNPTPHISWKL 38 (258)
Q Consensus 10 ~~~~~~~g~~v~l~C~~~~~~~~~v~W~~ 38 (258)
..+.+.+|..|+|.-.--..+.-.+.||+
T Consensus 31 ievt~r~G~nVTLga~~~lhpgq~v~Wy~ 59 (258)
T PHA03240 31 EEHTTREGDPLLLGGGHGLGAGQKAHWYK 59 (258)
T ss_pred eecccccCCceeeCCcccCCCCCEEEEEe
Confidence 45678899999997543324566899998
No 410
>PHA03189 UL14 tegument protein; Provisional
Probab=86.43 E-value=7.1 Score=29.77 Aligned_cols=22 Identities=14% Similarity=0.166 Sum_probs=17.5
Q ss_pred eceeeeecCCCceEEEEEEeec
Q psy14532 8 KFIQQTLQPGPPVSLKCIATGN 29 (258)
Q Consensus 8 ~~~~~~~~~g~~v~l~C~~~~~ 29 (258)
.+.++.+-.|+.+++.|.+..+
T Consensus 58 spAP~l~pyGdrvtVpC~fp~H 79 (348)
T PHA03189 58 SPAPLLVPYGDRVTVPCTFPTH 79 (348)
T ss_pred CCCccccCCCceeeeeeeecCC
Confidence 3566778899999999997653
No 411
>KOG0613|consensus
Probab=86.37 E-value=2.2 Score=38.95 Aligned_cols=163 Identities=12% Similarity=0.037 Sum_probs=89.3
Q ss_pred eeeceeeeecCCCceEEEEEEeecCCC-eEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccC
Q psy14532 6 IYKFIQQTLQPGPPVSLKCIATGNPTP-HISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKD 84 (258)
Q Consensus 6 ~~~~~~~~~~~g~~v~l~C~~~~~~~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~ 84 (258)
........+..+..+.+.|...+.+.+ .++|+.++......... ... -........+.|..+ ..
T Consensus 338 ~~~~~~v~a~d~~~v~m~~~~~~~~~p~~~~~~~~~~~~~~~~~~-~~~-------------~~~~~ts~~~~~~~~-~~ 402 (1205)
T KOG0613|consen 338 LVRNLSVTARDNTLVEMPTALSGTQKPDEAQGYHGEEVSSESLGA-LPC-------------PVGTVTSHTYTIKDA-GP 402 (1205)
T ss_pred ccccceeccccCcceeecccccCCcCCchheeecccccccccccc-ccc-------------ccccccCcchhhhhc-Cc
Confidence 344566778889999999999887766 49999876543322100 000 001112345778888 89
Q ss_pred CCceEEEEEEEeCCcceeeceEEEEEecCC-----eeccCCCcceecC--CcEEEEeeeCcccCc--eEEEEeCCcccCC
Q psy14532 85 HDRGVYWCTATNKQGRSSSQNVHISVTGAP-----FVRPMGNVSAIAG--EPLYLGCPVAGYPIE--SITWQKGVQQLPL 155 (258)
Q Consensus 85 ~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~-----~~~~~~~~~~~~g--~~~~l~C~~~~~~~~--~i~W~~~~~~~~~ 155 (258)
.+.+.|.|.+.|..+........+.....+ .+..........+ +.+.+.|...+.+.+ .++|++++.....
T Consensus 403 ~e~~~~~~~a~n~~g~~~~~~~~~vs~~~~gt~~~~~kk~~~~t~~L~~~~~i~~~~~~~s~~~~~~~~tt~~~~~~~s~ 482 (1205)
T KOG0613|consen 403 GEGYFTRVPAVNKGGTEQTIAESTVSEEMPGTQPPKFKKDVSTTDLLTVKDEITVRTPDSSTSMPMTTVTTIKDGLPLSD 482 (1205)
T ss_pred ccccccccceeccCCcccccchhhcccccCCCCCccccccccccccccCCcccccccCCCCccccceeEeeccCCccccc
Confidence 999999999999887655333333322222 1222222233333 778888988776644 4455555443321
Q ss_pred CcceEE-ecCCeEEEEecccCCCCcEEEEE
Q psy14532 156 NRRQKV-FPNGTLLIENVQKDHDRGVYWCT 184 (258)
Q Consensus 156 ~~~~~~-~~~~~l~i~~~~~~~~~g~y~C~ 184 (258)
...... ..-.+|.+.-... .+++.|.-.
T Consensus 483 ~s~~l~r~~~tslLlk~~~~-~~~A~~~~a 511 (1205)
T KOG0613|consen 483 RSVTLTRDVLTSLLLKVASL-SDGAQYTRA 511 (1205)
T ss_pred ccccccccchhhheeeccCC-Cccchhhhh
Confidence 111110 1112344444443 677776433
No 412
>PF11049 KSHV_K1: Glycoprotein K1 of Kaposi's sarcoma-associated herpes virus; InterPro: IPR021022 This is a highly glycosylated cytoplasmic and membrane protein similar to the immunoglobulin receptor family that is expressed as an inducible early-lytic-cycle gene product in primary effusion lymphoma cell-lines. This domain would appear to be the cytoplasmic region of the protein [].
Probab=82.67 E-value=4.4 Score=22.89 Aligned_cols=58 Identities=21% Similarity=0.382 Sum_probs=34.7
Q ss_pred EEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEEEEEEEeCCcc
Q psy14532 21 SLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGR 100 (258)
Q Consensus 21 ~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~~~~~~~~ 100 (258)
+|+|.... ..-+.||-+|..+-.- ...++.+.++ .++|+|+-.....
T Consensus 2 tltC~s~~--sLPiswYcN~TRLlRl-------------------------t~~Tlt~~~l-----tcNFtCV~qSGh~- 48 (71)
T PF11049_consen 2 TLTCPSNA--SLPISWYCNGTRLLRL-------------------------TQQTLTVVTL-----TCNFTCVGQSGHR- 48 (71)
T ss_pred ceecCCCC--CCcccEEECCceeeee-------------------------cCCeEeeeee-----eEEeeecCCCCCC-
Confidence 57886543 3468899998765322 1335666555 5788888654432
Q ss_pred eeeceEEEEEecCC
Q psy14532 101 SSSQNVHISVTGAP 114 (258)
Q Consensus 101 ~~~~~~~l~v~~~~ 114 (258)
.++.++=...|
T Consensus 49 ---hSiWItW~~qP 59 (71)
T PF11049_consen 49 ---HSIWITWYAQP 59 (71)
T ss_pred ---ceEEEEEcCch
Confidence 45555555444
No 413
>KOG1026|consensus
Probab=77.40 E-value=7.7 Score=33.98 Aligned_cols=147 Identities=16% Similarity=0.175 Sum_probs=77.0
Q ss_pred eeeecCCCceEEEEEEeecCCCeEEEeeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceEE
Q psy14532 11 QQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVY 90 (258)
Q Consensus 11 ~~~~~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y 90 (258)
...+..|..+.+.|...+.+.+...|+..+............. ........ ++
T Consensus 201 ~~~v~~~~~~~~~c~~~~~~vp~~~~~~~~~~~~~~~~~~~~c--------------------~~~~~~~~-------~~ 253 (774)
T KOG1026|consen 201 NLTVEEGSSITLKCSQAGIPVPCHYWFPNCLASSNTNQTSSLC--------------------RSECEVLE-------ND 253 (774)
T ss_pred hhhhcccchheeeeecccCCCcceeeecccccccCCCcccccc--------------------cccceeee-------ch
Confidence 3457889999999999999999999998755433321000000 01111111 17
Q ss_pred EEEEEeCCcceeeceEEEEEecCCeeccCCCcceecCCcEEEEeee---CcccCceEEEEeCCcccCCCcceEEecC---
Q psy14532 91 WCTATNKQGRSSSQNVHISVTGAPFVRPMGNVSAIAGEPLYLGCPV---AGYPIESITWQKGVQQLPLNRRQKVFPN--- 164 (258)
Q Consensus 91 ~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~g~~~~l~C~~---~~~~~~~i~W~~~~~~~~~~~~~~~~~~--- 164 (258)
.|...+..+... ..+.+.+..+.....+... .. + .-.|.. .+.+.+...|..++..+...........
T Consensus 254 ~c~~E~~~~~~~-~~v~~~~~~p~~~~~~~~~-~~--~--~~~C~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~t~s~~~ 327 (774)
T KOG1026|consen 254 LCIAENAVARSN-PSILLVVDLPKAEVLLCSP-LS--D--HHNCIPIGITANPGPALHWCYNGSGLNYRGTVCVTKSGKE 327 (774)
T ss_pred hhHHHHhhhhcC-ceeeeEEecccccccCCCC-cc--c--cCceeeeeccCCCCCceeeeecCccceEecccccccccCc
Confidence 888888777665 4555555444221111110 00 0 223432 2445667778776655432221111111
Q ss_pred CeEEEEecccCCCCcEEEEEEEeCCCC
Q psy14532 165 GTLLIENVQKDHDRGVYWCTATNKQGR 191 (258)
Q Consensus 165 ~~l~i~~~~~~~~~g~y~C~~~~~~~~ 191 (258)
..+...... ..+.|.|+|.+.+..+.
T Consensus 328 ~C~~~~~~~-h~~~~~~~~~~e~~~g~ 353 (774)
T KOG1026|consen 328 QCLPWNDPP-HSHNGNYTLFPELPGGK 353 (774)
T ss_pred CCcccCcCc-ccccCcceeeecccCcc
Confidence 122222222 26789999999987654
No 414
>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily. They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.
Probab=76.18 E-value=16 Score=22.57 Aligned_cols=79 Identities=19% Similarity=0.283 Sum_probs=45.5
Q ss_pred CCCcceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcceEEe--cCCeEEEEecccCCCCcEEEEEEEeCCCCCccce
Q psy14532 119 MGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVF--PNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQN 196 (258)
Q Consensus 119 ~~~~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~--~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~ 196 (258)
+....+..|+++.+.|...-..+..+.|.-.-. ...... .-..+.+.+++ .| ....|.+.-. +......
T Consensus 10 P~~~vV~~G~Sv~VNCStsC~~p~~~GLET~L~-----k~~~~~g~~W~~f~LsnV~--~d-s~~~C~~~C~-g~Q~~~~ 80 (91)
T PF03921_consen 10 PEEPVVPPGGSVWVNCSTSCPQPEKIGLETSLS-----KTELDSGPQWKAFQLSNVT--ED-SSPLCFFNCS-GEQSSAS 80 (91)
T ss_dssp SSEEEEETTEEEEEEEEESSSS-SEEEEESSSE-----EEEEEEETTEEEEEEEEE---SC-EEEEEEEEET-TEEEEEE
T ss_pred CCccEECCCCCEEEEEcCCCCCCCcceEEEecC-----CcccCCCCcEEEEEEEccc--cC-CeEEEEEEcC-CeEEEeE
Confidence 445678899999999998643233455543111 111111 12246777776 33 5678988764 4455677
Q ss_pred EEEEeecCCc
Q psy14532 197 VHISVTVPPK 206 (258)
Q Consensus 197 ~~l~v~~~p~ 206 (258)
..|.|+.+|.
T Consensus 81 ~~ItVY~~Pe 90 (91)
T PF03921_consen 81 ANITVYKPPE 90 (91)
T ss_dssp EEEEEEB--S
T ss_pred EeeEEeCCCC
Confidence 8888887764
No 415
>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ
Probab=68.69 E-value=13 Score=23.07 Aligned_cols=21 Identities=24% Similarity=0.651 Sum_probs=17.6
Q ss_pred eeeEEEEeccCCCCceeEEEE
Q psy14532 221 RAGVQCLVTKGDPPLTISWLK 241 (258)
Q Consensus 221 ~~~l~C~~~~~~p~~~~~W~~ 241 (258)
.+.-.|.+.+|.|+..|.|.-
T Consensus 22 v~VA~CiSa~GrPpa~ItW~t 42 (98)
T cd05890 22 MLVATCVSANGKPPSVVRWDT 42 (98)
T ss_pred EEEEEEEcCCCcCCcEeEEEc
Confidence 456679987999999999984
No 416
>PHA03189 UL14 tegument protein; Provisional
Probab=68.61 E-value=51 Score=25.45 Aligned_cols=18 Identities=28% Similarity=0.556 Sum_probs=14.6
Q ss_pred ecccCCCCcEEEEEEEeCC
Q psy14532 171 NVQKDHDRGVYWCTATNKQ 189 (258)
Q Consensus 171 ~~~~~~~~g~y~C~~~~~~ 189 (258)
++.. +.+|.|.|...|..
T Consensus 139 ~v~t-~taG~Y~CvLrN~t 156 (348)
T PHA03189 139 RVST-STAGMYECVLRNET 156 (348)
T ss_pred EEEe-cccceEEEEecccc
Confidence 4554 88999999999875
No 417
>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []. EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.
Probab=64.44 E-value=53 Score=23.96 Aligned_cols=96 Identities=18% Similarity=0.276 Sum_probs=50.6
Q ss_pred ceEEEEeCCcccCCCc---ceEEecCC------eEEEEecccCCCCcEEEEEEEeCCCCCccc----eEEEEeecCCccc
Q psy14532 142 ESITWQKGVQQLPLNR---RQKVFPNG------TLLIENVQKDHDRGVYWCTATNKQGRSSSQ----NVHISVTVPPKIA 208 (258)
Q Consensus 142 ~~i~W~~~~~~~~~~~---~~~~~~~~------~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~----~~~l~v~~~p~~~ 208 (258)
..+.|+.|+..+.... ......+| +|.+......+..-..+|.+.....+.... ...-.|..+|.+.
T Consensus 7 ~~~~Wf~dg~~v~~~~~~~~~~~~~~G~~s~vStl~~~~~~~~~~pp~i~C~v~W~r~~v~~~r~~a~~~P~Vy~~P~vs 86 (211)
T PF02124_consen 7 VRFRWFEDGNPVEPRFIRDSSQVWSDGLFSRVSTLTLPGNSADSPPPSIRCQVTWYRDSVSETRFNATATPSVYPKPRVS 86 (211)
T ss_pred EEEEEEECCEeCCccceeeEEEEecCCcEEEEEEEEecCCCCCCCCCcceEEEEEccCCCeeeEeecccccceecCCEEE
Confidence 3789999988766332 12223334 233322212244458999998765432222 2222344444444
Q ss_pred cCCCCCccCCCCeeeEEEEeccCCC-C-ceeEEEECCEec
Q psy14532 209 PFEFQPDLHSGDRAGVQCLVTKGDP-P-LTISWLKNGLPI 246 (258)
Q Consensus 209 ~~~~~~~~~~g~~~~l~C~~~~~~p-~-~~~~W~~~g~~l 246 (258)
+. . +.-...|.+ ..-| . ..+.|.-++...
T Consensus 87 v~-----F---~~g~AVC~A-~CVP~~~v~l~W~v~d~~~ 117 (211)
T PF02124_consen 87 VR-----F---EDGYAVCTA-RCVPRGNVTLRWSVGDDPS 117 (211)
T ss_pred EE-----e---cCCEEEEEc-ceeeCCCeEEEEEECCccC
Confidence 32 1 233566777 3444 2 789999877664
No 418
>PHA03282 envelope glycoprotein E; Provisional
Probab=58.43 E-value=30 Score=28.42 Aligned_cols=40 Identities=23% Similarity=0.444 Sum_probs=28.4
Q ss_pred eeCCcEEEeecccCCCceEEEEEEEeCCcce-eeceEEEEEe
Q psy14532 71 FPNGTLLIENVQKDHDRGVYWCTATNKQGRS-SSQNVHISVT 111 (258)
Q Consensus 71 ~~~~~l~i~~~~~~~d~G~Y~C~~~~~~~~~-~~~~~~l~v~ 111 (258)
..|++|.|.++ +..|+|.|.-.+....... ....+.|.|.
T Consensus 121 ~~n~tl~l~~a-~~~DsG~Y~L~~~~~~~~~~~~~~v~l~V~ 161 (540)
T PHA03282 121 VVNGTLVLREA-RETDSGMYVLSVSRAPNSTAARAVVFLVVG 161 (540)
T ss_pred EecceEEEeec-cccCCceEEEEecCCCCchhheEEEEEEec
Confidence 34888999999 9999999999876544333 2244555554
No 419
>PHA03112 IL-18 binding protein; Provisional
Probab=53.71 E-value=67 Score=21.70 Aligned_cols=27 Identities=15% Similarity=0.293 Sum_probs=21.1
Q ss_pred CCCCeeeEEEEeccCCCC-ceeEEEECC
Q psy14532 217 HSGDRAGVQCLVTKGDPP-LTISWLKNG 243 (258)
Q Consensus 217 ~~g~~~~l~C~~~~~~p~-~~~~W~~~g 243 (258)
..++.+.|+|.+..-.|. .-+.|..++
T Consensus 36 k~~~~vvL~C~gcs~fp~fS~lYWl~gn 63 (141)
T PHA03112 36 KETEKVVLECRGCSYFPKFSYVYWLIGN 63 (141)
T ss_pred CCCCEEEEEEECccCCCCceEEEEEcCC
Confidence 559999999999655576 567999765
No 420
>PHA03283 envelope glycoprotein E; Provisional
Probab=52.55 E-value=1.4e+02 Score=25.18 Aligned_cols=37 Identities=16% Similarity=0.179 Sum_probs=29.1
Q ss_pred CcEEEeecccCCCceEEEEEEEeCCcceeeceEEEEEec
Q psy14532 74 GTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTG 112 (258)
Q Consensus 74 ~~l~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~ 112 (258)
+-|+|.++ +.+++|.|+-...+..+ .....+.|+|..
T Consensus 134 ~~l~I~~a-t~~~aGVYtly~r~d~~-~~~~vflvtVk~ 170 (542)
T PHA03283 134 SVLQIQRA-TPNIAGVYTLHVSSDGM-MKHSVFFVTVKK 170 (542)
T ss_pred CeeEEEec-ccccCeEEEEEecCCCc-eEEEEEEEEecC
Confidence 34889999 99999999999988766 433666677765
No 421
>PHA03286 envelope glycoprotein E; Provisional
Probab=49.91 E-value=1.5e+02 Score=24.58 Aligned_cols=37 Identities=19% Similarity=0.235 Sum_probs=30.3
Q ss_pred CcEEEeecccCCCceEEEEEEEeCCcceeeceEEEEEe
Q psy14532 74 GTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVT 111 (258)
Q Consensus 74 ~~l~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~ 111 (258)
..|.|.+. +..++|.|+-...+..+......+.|.|.
T Consensus 127 ~~L~I~nA-t~qnaGiYtly~rnd~~~~~~~vflVtV~ 163 (492)
T PHA03286 127 KELTILNA-SSQNAGIYIRYSRNGTRTAVMDVLVVWVS 163 (492)
T ss_pred CceEEeec-cccccceEEEEEcCCCCcEEEEEEEEEEe
Confidence 45899999 99999999999998877666566777774
No 422
>PHA03283 envelope glycoprotein E; Provisional
Probab=46.68 E-value=1.8e+02 Score=24.64 Aligned_cols=76 Identities=21% Similarity=0.314 Sum_probs=46.4
Q ss_pred CCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEeecCCcc---------ccCCC------------CCccCCCCee
Q psy14532 164 NGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKI---------APFEF------------QPDLHSGDRA 222 (258)
Q Consensus 164 ~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p~~---------~~~~~------------~~~~~~g~~~ 222 (258)
.+.|.|.+++. .++|.|+-...+..+ .....+.|.|..++.. .+.|. ......|+++
T Consensus 133 ~~~l~I~~at~-~~aGVYtly~r~d~~-~~~~vflvtVk~~~~~~~~~Pp~~~pv~P~~h~a~f~v~nYhS~vf~~GDtf 210 (542)
T PHA03283 133 RSVLQIQRATP-NIAGVYTLHVSSDGM-MKHSVFFVTVKKPPKQPQTPPAPLVPQVPARHHTDFHVRGYHSRVYSPGDSF 210 (542)
T ss_pred CCeeEEEeccc-ccCeEEEEEecCCCc-eEEEEEEEEecCCCcCCCCCCCCccccCCccCCceEEEecceeEEecCCCce
Confidence 35689999986 999999998887655 3444455666552111 01111 1134579998
Q ss_pred eEEEEeccC--CC--CceeEEEE
Q psy14532 223 GVQCLVTKG--DP--PLTISWLK 241 (258)
Q Consensus 223 ~l~C~~~~~--~p--~~~~~W~~ 241 (258)
.+.-.+... .+ ..+|.|++
T Consensus 211 ~lsi~l~s~~~d~~fs~~i~Wyy 233 (542)
T PHA03283 211 DLSVHLESDIGDPSFSATIDWYY 233 (542)
T ss_pred eEeEEEeeccCCCCceEEEEEEE
Confidence 887666321 12 24789987
No 423
>KOG1026|consensus
Probab=44.87 E-value=71 Score=28.47 Aligned_cols=110 Identities=18% Similarity=0.270 Sum_probs=56.9
Q ss_pred cceecCCcEEEEeeeCcccCceEEEEeCCcccCCCcceEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEe
Q psy14532 122 VSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISV 201 (258)
Q Consensus 122 ~~~~~g~~~~l~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v 201 (258)
..+..+..+++.|...+.+-+.+.|+..+........... ..+... .-.-.+.|.+.+..+. ....+.+.+
T Consensus 202 ~~v~~~~~~~~~c~~~~~~vp~~~~~~~~~~~~~~~~~~~---~c~~~~-----~~~~~~~c~~E~~~~~-~~~~v~~~~ 272 (774)
T KOG1026|consen 202 LTVEEGSSITLKCSQAGIPVPCHYWFPNCLASSNTNQTSS---LCRSEC-----EVLENDLCIAENAVAR-SNPSILLVV 272 (774)
T ss_pred hhhcccchheeeeecccCCCcceeeecccccccCCCcccc---cccccc-----eeeechhhHHHHhhhh-cCceeeeEE
Confidence 4566788999999999999999999887665443221110 001000 1111278888887663 233444444
Q ss_pred ecCCccccCCCCCccCCCCeeeEEEEec--cCCCCceeEEEECCEec
Q psy14532 202 TVPPKIAPFEFQPDLHSGDRAGVQCLVT--KGDPPLTISWLKNGLPI 246 (258)
Q Consensus 202 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~--~~~p~~~~~W~~~g~~l 246 (258)
..++......... +. .-.|... .+.|.+...|..++.-+
T Consensus 273 ~~p~~~~~~~~~~----~~--~~~C~~~~~~~~~~~~~~~~~~~~~~ 313 (774)
T KOG1026|consen 273 DLPKAEVLLCSPL----SD--HHNCIPIGITANPGPALHWCYNGSGL 313 (774)
T ss_pred ecccccccCCCCc----cc--cCceeeeeccCCCCCceeeeecCccc
Confidence 4443222111110 00 2222221 24556667777766554
No 424
>PF09085 Adhes-Ig_like: Adhesion molecule, immunoglobulin-like; InterPro: IPR015169 This domain is found in mucosal vascular addressin cell adhesion molecule 1 proteins (MAdCAM-1). These are cell adhesion molecules expressed on the endothelium in mucosa that guide the specific homing of lymphocytes into mucosal tissues. MAdCAM-1 belongs to a subclass of the immunoglobulin superfamily (IgSF), the members of which are ligands for integrins []. The crystal structure of this domain has been reported; it adopts an immunoglobulin-like beta-sandwich structure, with seven strands arranged in two beta-sheets in a Greek-key topology [, ].; GO: 0007155 cell adhesion, 0016020 membrane; PDB: 1GSM_A 1BQS_A.
Probab=44.67 E-value=38 Score=21.01 Aligned_cols=36 Identities=22% Similarity=0.312 Sum_probs=23.3
Q ss_pred ccCCCCeeeEEEEeccCCC----CceeEEEECCEeccccc
Q psy14532 215 DLHSGDRAGVQCLVTKGDP----PLTISWLKNGLPILSAM 250 (258)
Q Consensus 215 ~~~~g~~~~l~C~~~~~~p----~~~~~W~~~g~~l~~~~ 250 (258)
.+..|....+.|.+.+-.| ..++.|+.+++.+....
T Consensus 12 ~LVpg~dqevaCTAhnVtP~~p~~LSfslllGdqeLeg~q 51 (110)
T PF09085_consen 12 ALVPGRDQEVACTAHNVTPADPDALSFSLLLGDQELEGVQ 51 (110)
T ss_dssp SB-TT--SEEEEEEEEEB--STTTEEEEEEETTEE-TT-E
T ss_pred HhccCCCceeeeeeccccCCCCCeEEeeeeeCceeecchh
Confidence 4567999999999865433 35899999999986544
No 425
>PHA03286 envelope glycoprotein E; Provisional
Probab=44.22 E-value=1.9e+02 Score=24.07 Aligned_cols=78 Identities=15% Similarity=0.109 Sum_probs=47.2
Q ss_pred CCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEeec-----CCccc--cCC------------CCCccCCCCeeeE
Q psy14532 164 NGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTV-----PPKIA--PFE------------FQPDLHSGDRAGV 224 (258)
Q Consensus 164 ~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~-----~p~~~--~~~------------~~~~~~~g~~~~l 224 (258)
...|.|.+.+. .++|.|+-...+..+......+.|.|.. +|... +.| .......|+++.+
T Consensus 126 ~~~L~I~nAt~-qnaGiYtly~rnd~~~~~~~vflVtV~~~~~~r~p~~~~pv~p~~~~~~f~l~ny~S~lF~~GDTF~v 204 (492)
T PHA03286 126 GKELTILNASS-QNAGIYIRYSRNGTRTAVMDVLVVWVSGHGRARDPTMNIPITPPSTRVDLSLKNFKAFLYNVGDTVDA 204 (492)
T ss_pred CCceEEeeccc-cccceEEEEEcCCCCcEEEEEEEEEEecCCCCCCCCcccCCCCcccceEEEEecccceEecCCCeEEE
Confidence 35689999987 9999999998877654444445555532 11111 111 1123457999887
Q ss_pred EEEeccCC---C-CceeEEEEC
Q psy14532 225 QCLVTKGD---P-PLTISWLKN 242 (258)
Q Consensus 225 ~C~~~~~~---p-~~~~~W~~~ 242 (258)
.-...... + ..+|.|++-
T Consensus 205 Sv~l~~~~~d~~Fsl~i~W~y~ 226 (492)
T PHA03286 205 SVTAHLTNWAGAFSLEFRVLFL 226 (492)
T ss_pred EEEEeecccCCCceEEEEEEEe
Confidence 76663111 1 257999873
No 426
>PF00801 PKD: PKD domain; InterPro: IPR000601 The PKD (Polycystic Kidney Disease) domain was first identified in the Polycystic Kidney Disease protein, polycystin-1 (PDK1 gene), and contains an Ig-like fold consisting of a beta-sandwich of seven strands in two sheets with a Greek key topology, although some members have additional strands []. Polycystin-1 is a large cell-surface glycoprotein involved in adhesive protein-protein and protein-carbohydrate interactions; however it is not clear if the PKD domain mediates any of these interactions. PKD domains are also found in other proteins, usually in the extracellular parts of proteins involved in interactions with other proteins. For example, domains with a PKD-type fold are found in archaeal surface layer proteins that protect the cell from extreme environments [], and in the human VPS10 domain-containing receptor SorCS2 [].; PDB: 1B4R_A 2KZW_A 2C4X_A 2C26_A 2Y72_B 3JQU_A 3JS7_B 1WGO_A 1L0Q_A.
Probab=40.56 E-value=47 Score=18.79 Aligned_cols=29 Identities=17% Similarity=0.279 Sum_probs=21.4
Q ss_pred CccCCCCeeeEEEEeccCCCCceeEEEECC
Q psy14532 214 PDLHSGDRAGVQCLVTKGDPPLTISWLKNG 243 (258)
Q Consensus 214 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g 243 (258)
..+..|+.+.|.... .......+.|.+++
T Consensus 6 ~~~~~g~~v~f~~~~-~~g~~~~y~W~fgd 34 (69)
T PF00801_consen 6 TYVPTGQPVTFTASS-SDGSPVTYSWDFGD 34 (69)
T ss_dssp SCEBTTSEEEEEETT-TTSSECEEEEE-SS
T ss_pred CEEcCCCEEEEEEEc-cCCCCeEEEEEECC
Confidence 346779999999888 34445789999987
No 427
>KOG0200|consensus
Probab=40.45 E-value=2.5e+02 Score=24.55 Aligned_cols=23 Identities=35% Similarity=0.624 Sum_probs=19.8
Q ss_pred CCcEEEeecccCCCceEEEEEEEe
Q psy14532 73 NGTLLIENVQKDHDRGVYWCTATN 96 (258)
Q Consensus 73 ~~~l~i~~~~~~~d~G~Y~C~~~~ 96 (258)
...+.+..+ ...|.|.|+|.+.+
T Consensus 12 ~~~~~~~~~-~~~~~~~y~~~~~~ 34 (609)
T KOG0200|consen 12 HWFLIIDSV-VPGDKGFYTCLVSN 34 (609)
T ss_pred cceEEEEEE-EecCCccEEEEEec
Confidence 456778888 89999999999998
No 428
>PF01688 Herpes_gI: Alphaherpesvirus glycoprotein I; InterPro: IPR002874 This family consists of glycoprotein I from various members of the alphaherpesvirinae. These include Human herpesvirus 1 (HHV-1), Human herpesvirus 3 (HHV-3) and Suid herpesvirus 1 (Pseudorabies virus). Glycoprotein I (gI) is important during natural infection, mutants lacking gI produce smaller lesions at the site of infection and show reduced neuronal spread []. gI forms a heterodimeric complex with gE; this complex displays Fc receptor activity (binds to the Fc region of immunoglobulin) []. Glycoproteins are also important in the production of virus-neutralizing antibodies and cell mediated immunity []. The alphaherpesviridae have a dsDNA genome and have no RNA stage during viral replication.; GO: 0033643 host cell part
Probab=39.15 E-value=90 Score=21.71 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=19.3
Q ss_pred EEEeecccCCCceEEEEEEEeCC
Q psy14532 76 LLIENVQKDHDRGVYWCTATNKQ 98 (258)
Q Consensus 76 l~i~~~~~~~d~G~Y~C~~~~~~ 98 (258)
|.|.+. +.+|+|.|.-++.-..
T Consensus 126 L~i~~p-~~~dsG~Y~lRV~l~~ 147 (161)
T PF01688_consen 126 LRIRNP-RPEDSGIYYLRVWLDG 147 (161)
T ss_pred EEeCCC-CcccceEEEEEEEECC
Confidence 779999 9999999999988654
No 429
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=38.35 E-value=10 Score=31.09 Aligned_cols=39 Identities=33% Similarity=0.507 Sum_probs=0.0
Q ss_pred CCcEEEeecccCCCceEEEEEEEeCCcceeeceEEEEEec
Q psy14532 73 NGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTG 112 (258)
Q Consensus 73 ~~~l~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~ 112 (258)
++.|.|.++ +..|+|.|+-...+..+......+.|.|..
T Consensus 88 ~~~l~i~~a-~~~~~GvY~l~~~~~~~~~~~~~~~v~v~~ 126 (439)
T PF02480_consen 88 KGGLSILNA-TEQDSGVYTLYVRNDSGWAHQSVVFVTVKG 126 (439)
T ss_dssp ----------------------------------------
T ss_pred CCceEEecc-ccccCeeEEEEecCCCCceEEEEEEEEEcC
Confidence 467999999 999999999999877765554556666654
No 430
>KOG3611|consensus
Probab=37.77 E-value=98 Score=27.69 Aligned_cols=40 Identities=28% Similarity=0.392 Sum_probs=26.6
Q ss_pred eCCcEEEeecccCCCceEEEEEEEeCCcceeeceEEEEEec
Q psy14532 72 PNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTG 112 (258)
Q Consensus 72 ~~~~l~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~ 112 (258)
..+.+.+..+ +..|.|.|.|.+....-......+.+.+..
T Consensus 610 ~~G~lll~~~-q~~~~G~y~c~~~e~~~~~~~~~~~~~~~~ 649 (737)
T KOG3611|consen 610 DEGGLVLLSV-QKLDGGTYPCYADESSFVSTVISVNLHVAR 649 (737)
T ss_pred ccCceeEEEE-eeccCcccccccccCccccceEEEeeeecC
Confidence 3456778888 888999999998765433332444444443
No 431
>PF05566 Pox_vIL-18BP: Orthopoxvirus interleukin 18 binding protein; InterPro: IPR008791 Interleukin-18 (IL-18) is a proinflammatory cytokine that plays a key role in the activation of natural killer and T helper 1 cell responses principally by inducing interferon-gamma (IFN-gamma). Several poxvirus genes encode proteins with sequence similarity to IL-18BPs. It has been shown that vaccinia, ectromelia and cowpox viruses secrete from infected cells a soluble IL-18BP (vIL-18BP) that may modulate the host antiviral response. The expression of vIL-18BPs by distinct poxvirus genera that cause local or general viral dissemination, or persistent or acute infections in the host, emphasises the importance of IL-18 in response to viral infections [].; PDB: 3F62_A.
Probab=36.27 E-value=1.2e+02 Score=19.42 Aligned_cols=31 Identities=19% Similarity=0.339 Sum_probs=19.0
Q ss_pred cEEEeecccCCCceEEEEEEEeCCcceeeceEE
Q psy14532 75 TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVH 107 (258)
Q Consensus 75 ~l~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~~ 107 (258)
.|++.+. ..-+.-.++|+.....|... +.+.
T Consensus 94 vL~vt~t-~Kf~h~rfTCVL~t~DGvsk-k~iw 124 (126)
T PF05566_consen 94 VLHVTDT-EKFAHYRFTCVLTTIDGVSK-KNIW 124 (126)
T ss_dssp EEEE--T-TTTTTEEEEEEEEETTEEEE-E---
T ss_pred eeeecch-hhccceeEEEEEEcCCcccc-cccc
Confidence 3566666 66677889999988877655 4443
No 432
>PHA02935 Hypothetical protein; Provisional
Probab=35.44 E-value=77 Score=22.69 Aligned_cols=60 Identities=22% Similarity=0.271 Sum_probs=34.2
Q ss_pred EEEeecccCCCceEEEEEEEeCCcceeeceEEEEEecCCeeccCCCc-ce-ecCCcEEEEeeeC
Q psy14532 76 LLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGNV-SA-IAGEPLYLGCPVA 137 (258)
Q Consensus 76 l~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~-~~-~~g~~~~l~C~~~ 137 (258)
|.|..+ +-+|+|.|.-+.+...|........+.|...- +.....+ .. ..--.+.+.|...
T Consensus 104 lnissl-ryedsgsykgvshlkdgvivtttmnisvkani-idltgrvryltrnycevkirceik 165 (349)
T PHA02935 104 LNISSL-RYEDSGSYKGVSHLKDGVIVTTTMNISVKANI-IDLTGRVRYLTRNYCEVKIRCEIK 165 (349)
T ss_pred eeccce-eeccCCcccCchhhcCceEEEEEEEEEEEeee-EeccceeeeeccccEEEEEEEEEe
Confidence 557777 88999999887776666555455555554321 1111111 11 1123578888764
No 433
>PF08043 Xin: Xin repeat; InterPro: IPR012510 The repeat has the consensus sequence GDV(K/Q/R)(T/S/G)X(R/K/T) WLFETXPLD. This repeat motif is typically found in the N terminus of the proteins, with a copy number between 2 and 28 repeats. Direct evidence for binding to and stabilising F-actin has been found in the human protein (Q702N9 from SWISSPROT) []. The homologues in mouse and chicken localise in the adherens junction complex of the intercalated disc in cardiac muscle and in the myotendon junction of skeletal muscle. mXin may co-localise with Vinculin which is known to attach the actin to the cytoplasmic membrane []. It has been shown that the amino-terminus of human xin (CMYA1) binds the EVH1 domain of Mena/VASP/EVL, and the carboxy-terminus binds the, for the filamin family unique, domain 20 of filamin C []. This confirms the proposed role of xin repeat containing proteins as F-actin-binding adapter proteins.; GO: 0003779 actin binding, 0030036 actin cytoskeleton organization, 0030054 cell junction
Probab=34.09 E-value=38 Score=13.26 Aligned_cols=12 Identities=33% Similarity=0.589 Sum_probs=8.3
Q ss_pred eeEEEECCEecc
Q psy14532 236 TISWLKNGLPIL 247 (258)
Q Consensus 236 ~~~W~~~g~~l~ 247 (258)
...|.+..++|+
T Consensus 5 ~~~wlFEtqplD 16 (16)
T PF08043_consen 5 TTRWLFETQPLD 16 (16)
T ss_pred eeEEEeecccCC
Confidence 467888777663
No 434
>PHA03282 envelope glycoprotein E; Provisional
Probab=33.82 E-value=1.7e+02 Score=24.39 Aligned_cols=26 Identities=27% Similarity=0.548 Sum_probs=21.3
Q ss_pred cCCeEEEEecccCCCCcEEEEEEEeCC
Q psy14532 163 PNGTLLIENVQKDHDRGVYWCTATNKQ 189 (258)
Q Consensus 163 ~~~~l~i~~~~~~~~~g~y~C~~~~~~ 189 (258)
.+++|.|.++.. +|+|.|+-.+...-
T Consensus 122 ~n~tl~l~~a~~-~DsG~Y~L~~~~~~ 147 (540)
T PHA03282 122 VNGTLVLREARE-TDSGMYVLSVSRAP 147 (540)
T ss_pred ecceEEEeeccc-cCCceEEEEecCCC
Confidence 477899999986 99999999875543
No 435
>PHA03281 envelope glycoprotein E; Provisional
Probab=33.11 E-value=3.2e+02 Score=23.49 Aligned_cols=75 Identities=20% Similarity=0.315 Sum_probs=45.5
Q ss_pred CCcEEEeecccCCCceEEEEEEEeCCcceeeceEEEEEecCC-------eeccC-----------CCcceecCCcEEEEe
Q psy14532 73 NGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP-------FVRPM-----------GNVSAIAGEPLYLGC 134 (258)
Q Consensus 73 ~~~l~i~~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~~-------~~~~~-----------~~~~~~~g~~~~l~C 134 (258)
.+.|.|.++ +..++|.|+-..+...|...-..+.|+|.... .+.+. .......|+++.+.-
T Consensus 297 ~~vL~I~nA-T~~naGVYtly~rg~~G~s~~svfLVtVkg~~~~rip~p~Vtpk~hga~F~vknYhShVF~pGDTFsl~v 375 (642)
T PHA03281 297 PGVLKFEHM-EAHHAGVYIWNLQGSDGENMYATFLVKLKGDEENHIDLPAVTPKPKGAEFHMWHYHSHVFSVGDTFSLAM 375 (642)
T ss_pred CCeeEEEec-ccccceeEEEEecCCCCcceeEEEEEEecCCcccCCCCCCccccccCceEEEeccceeEecCCCeeEEEE
Confidence 457899999 99999999988886555444235666665422 11110 112344688776665
Q ss_pred eeCcc----c-CceEEEEe
Q psy14532 135 PVAGY----P-IESITWQK 148 (258)
Q Consensus 135 ~~~~~----~-~~~i~W~~ 148 (258)
..... + ...+.|+.
T Consensus 376 ~L~s~ihD~pFsleI~Wyy 394 (642)
T PHA03281 376 HLQYKIHDAPFDLLLEWLY 394 (642)
T ss_pred EEeeeccCCCceeEEEEEE
Confidence 54321 1 34788976
No 436
>PF02440 Adeno_E3_CR1: Adenovirus E3 region protein CR1; InterPro: IPR003471 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D virus) 49 Kd protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=31.78 E-value=67 Score=18.23 Aligned_cols=20 Identities=20% Similarity=0.576 Sum_probs=13.1
Q ss_pred cCCCCeeeEEEEeccCCCCceeEEE
Q psy14532 216 LHSGDRAGVQCLVTKGDPPLTISWL 240 (258)
Q Consensus 216 ~~~g~~~~l~C~~~~~~p~~~~~W~ 240 (258)
+..|+.++|. |++...+.|+
T Consensus 2 v~~G~N~TL~-----Gp~~~~V~Wy 21 (63)
T PF02440_consen 2 VTVGSNVTLV-----GPPDGPVTWY 21 (63)
T ss_pred EeEcCcEEEe-----CCCCCceEEE
Confidence 3456666664 5566778898
No 437
>PF02010 REJ: REJ domain; InterPro: IPR002859 The REJ (Receptor for Egg Jelly) domain is found in PKD1 P98161 from SWISSPROT and the sperm receptor for egg jelly Q26627 from SWISSPROT. The exact function of this domain is unknown. The domain is 600 amino acids long so is probably composed of multiple structural domains. There are six completely conserved cysteine residues that may form disulphide bridges. This region contains tandem PKD-like domains. Sequence similarity between a region of the autosomal dominant polycystic kidney disease (ADPKD) protein, polycystin-1 and a sea urchin sperm glycoprotein involved in fertilization, the receptor for egg jelly (suREJ) has been known for some time. The suREJ protein binds the glycoprotein coat of the egg (egg jelly), triggering the acrosome reaction, which transforms the sperm into a fusogenic cell. The sequence similarity and expression pattern suggests that the predicted human PKDREJ protein is a mammalian equivalent of the suREJ protein and therefore may have a central role in human fertilization [].; PDB: 2E7M_A 2YRL_A.
Probab=31.24 E-value=1.1e+02 Score=25.12 Aligned_cols=168 Identities=17% Similarity=0.137 Sum_probs=20.3
Q ss_pred CCcEEEeecccC-CCceEEEEEEE--eCCcceeeceEEEEEecCCeecc---CCCcceecCCcEEEEeeeCccc------
Q psy14532 73 NGTLLIENVQKD-HDRGVYWCTAT--NKQGRSSSQNVHISVTGAPFVRP---MGNVSAIAGEPLYLGCPVAGYP------ 140 (258)
Q Consensus 73 ~~~l~i~~~~~~-~d~G~Y~C~~~--~~~~~~~~~~~~l~v~~~~~~~~---~~~~~~~~g~~~~l~C~~~~~~------ 140 (258)
...|.|.+. .. .-...|...+. ...+......+.+.|...+.... .....+..++.+.|.......|
T Consensus 37 ~~~l~ip~~-~L~~G~y~~~~~Vt~~~~~~~~~~~~~~v~V~~s~l~~~I~gG~~~~~~~~~~i~ldgs~S~Dpd~~~~~ 115 (440)
T PF02010_consen 37 TPQLTIPPY-TLPPGDYTFTLTVTASSNPGLSSTDSVTVTVEPSPLVAVIKGGSSRTVGYNSDITLDGSQSYDPDGPPGD 115 (440)
T ss_dssp SSECEEECE-S--SCEEEEEEEEE--BCTTEEEEEEEEEEEE--------------------------------------
T ss_pred ceEEEeCcc-cCCCCCEEEEEEEEEECCCCceEEEEEEEEEeeccceeEEcCCccceeecCceEEEeeEEEecccccccC
Confidence 346777776 44 22234555565 23333344677777765543221 1222223334566665332222
Q ss_pred -CceEEEEeCCcccC-C------CcceEEecCCeEEEEecccC-CCCcEEEEEEEeCCCCCccceEEEEee--cCCcccc
Q psy14532 141 -IESITWQKGVQQLP-L------NRRQKVFPNGTLLIENVQKD-HDRGVYWCTATNKQGRSSSQNVHISVT--VPPKIAP 209 (258)
Q Consensus 141 -~~~i~W~~~~~~~~-~------~~~~~~~~~~~l~i~~~~~~-~~~g~y~C~~~~~~~~~~~~~~~l~v~--~~p~~~~ 209 (258)
...+.|.-...... . ...........+.|...... ...-.|+..+....+........+.+. .+|.+.+
T Consensus 116 ~~l~y~W~C~~~~~~~~C~~~~~~~~~~~~~~~~l~i~~~~l~~~~~y~f~ltv~k~~r~s~s~~~~v~v~~~~~p~v~I 195 (440)
T PF02010_consen 116 SGLTYSWSCTDLSSNSACSTPSTNITLLNSSSSSLTIPASTLSPGSTYTFTLTVSKGSRSSSSASQTVTVVSGDPPTVSI 195 (440)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CceEEEEEEeCCceeccccccccccccCCCCCEEEEEEhHHcCCCceEEEEEEEEeCCCCceeeEEEEEeccCCCCceeE
Confidence 13566754222111 0 00011122334555332220 111234444444433222233333332 2343333
Q ss_pred CCC---CCccCCCCeeeEEEEeccC---CCCceeEEEE
Q psy14532 210 FEF---QPDLHSGDRAGVQCLVTKG---DPPLTISWLK 241 (258)
Q Consensus 210 ~~~---~~~~~~g~~~~l~C~~~~~---~p~~~~~W~~ 241 (258)
... ...+..++.+.|...+... .....+.|..
T Consensus 196 ~~~~n~~~~vn~~~~l~L~~~~~~~~~~~~~~~y~Wsl 233 (440)
T PF02010_consen 196 SCVSNCKGKVNPSERLVLQASCSSCDSDSSNVSYSWSL 233 (440)
T ss_dssp --------------------------------------
T ss_pred ccccccccccCCCCCEEEEEEEeCCCCcCCCEEEEEEE
Confidence 221 1237778888777655321 2346788886
No 438
>KOG3611|consensus
Probab=30.38 E-value=1.7e+02 Score=26.24 Aligned_cols=72 Identities=22% Similarity=0.316 Sum_probs=40.4
Q ss_pred cEEEEeeeCcccCceEEEEeC--C--c--ccCCCcceEEecCCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEee
Q psy14532 129 PLYLGCPVAGYPIESITWQKG--V--Q--QLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVT 202 (258)
Q Consensus 129 ~~~l~C~~~~~~~~~i~W~~~--~--~--~~~~~~~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~ 202 (258)
...|.|...+.. ..+.|+.. + . .+...........+.+.+..++. .++|.|.|.+....-......+.+.+.
T Consensus 571 ~~~l~c~~~~~~-a~~~w~~~~~~~~~~~~~~~~~~~~~~~~G~lll~~~q~-~~~G~y~c~~~e~~~~~~~~~~~~~~~ 648 (737)
T KOG3611|consen 571 SEVLRCVPSSNQ-APVVWYHQSTKDGRKEEVRQRDVVSRTDEGGLVLLSVQK-LDGGTYPCYADESSFVSTVISVNLHVA 648 (737)
T ss_pred cceeeccccccc-cceeeEeeccCccccceeccCcceeecccCceeEEEEee-ccCcccccccccCccccceEEEeeeec
Confidence 356777665433 33788742 1 1 22223333333456577778887 889999999887643233333344433
No 439
>PF15096 G6B: G6B family
Probab=26.08 E-value=73 Score=22.57 Aligned_cols=16 Identities=31% Similarity=0.698 Sum_probs=12.5
Q ss_pred eecCCCceEEEEEEee
Q psy14532 13 TLQPGPPVSLKCIATG 28 (258)
Q Consensus 13 ~~~~g~~v~l~C~~~~ 28 (258)
.-..|+.|.|.|..-.
T Consensus 7 eGrPGDRVnlSCvGVs 22 (224)
T PF15096_consen 7 EGRPGDRVNLSCVGVS 22 (224)
T ss_pred cCCCCCeeeeeeccCC
Confidence 4578999999997543
No 440
>PHA03281 envelope glycoprotein E; Provisional
Probab=26.03 E-value=4.3e+02 Score=22.77 Aligned_cols=77 Identities=21% Similarity=0.362 Sum_probs=46.5
Q ss_pred CCeEEEEecccCCCCcEEEEEEEeCCCCCccceEEEEeecCC--c-----cccCCC----------CCccCCCCeeeEEE
Q psy14532 164 NGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPP--K-----IAPFEF----------QPDLHSGDRAGVQC 226 (258)
Q Consensus 164 ~~~l~i~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~p--~-----~~~~~~----------~~~~~~g~~~~l~C 226 (258)
.+.|.|.+.+. .++|.|+-......+......+.|.|...+ . +.+.+. ......|+++.+.-
T Consensus 297 ~~vL~I~nAT~-~naGVYtly~rg~~G~s~~svfLVtVkg~~~~rip~p~Vtpk~hga~F~vknYhShVF~pGDTFsl~v 375 (642)
T PHA03281 297 PGVLKFEHMEA-HHAGVYIWNLQGSDGENMYATFLVKLKGDEENHIDLPAVTPKPKGAEFHMWHYHSHVFSVGDTFSLAM 375 (642)
T ss_pred CCeeEEEeccc-ccceeEEEEecCCCCcceeEEEEEEecCCcccCCCCCCccccccCceEEEeccceeEecCCCeeEEEE
Confidence 45689999987 999999988876555434334555665422 1 111111 11345799988877
Q ss_pred EeccC--C-C-CceeEEEE
Q psy14532 227 LVTKG--D-P-PLTISWLK 241 (258)
Q Consensus 227 ~~~~~--~-p-~~~~~W~~ 241 (258)
.+... . | ..+|.|++
T Consensus 376 ~L~s~ihD~pFsleI~Wyy 394 (642)
T PHA03281 376 HLQYKIHDAPFDLLLEWLY 394 (642)
T ss_pred EEeeeccCCCceeEEEEEE
Confidence 76322 1 1 25799987
No 441
>PHA03290 envelope glycoprotein I; Provisional
Probab=23.74 E-value=2.2e+02 Score=22.52 Aligned_cols=24 Identities=17% Similarity=0.224 Sum_probs=20.2
Q ss_pred cEEEeecccCCCceEEEEEEEeCCc
Q psy14532 75 TLLIENVQKDHDRGVYWCTATNKQG 99 (258)
Q Consensus 75 ~l~i~~~~~~~d~G~Y~C~~~~~~~ 99 (258)
-|.|.+. +.+|+|.|.-++.-...
T Consensus 130 LL~I~~P-~~~DSGiY~LRV~Ldga 153 (357)
T PHA03290 130 IFKINKP-GIEDAGIYLLLVQLDHS 153 (357)
T ss_pred EEEeCCC-CcccCeeEEEEEEeCCC
Confidence 3679999 99999999999986543
No 442
>PF13220 DUF4028: Protein of unknown function (DUF4028)
Probab=22.89 E-value=1e+02 Score=16.63 Aligned_cols=19 Identities=26% Similarity=0.548 Sum_probs=13.6
Q ss_pred cCCCceEEEEEEEeCCcce
Q psy14532 83 KDHDRGVYWCTATNKQGRS 101 (258)
Q Consensus 83 ~~~d~G~Y~C~~~~~~~~~ 101 (258)
..+.+..|.|.+.+..|..
T Consensus 6 lkdssnsflctvqnkng~~ 24 (65)
T PF13220_consen 6 LKDSSNSFLCTVQNKNGDQ 24 (65)
T ss_pred eecCCCceEEEEecccHhH
Confidence 3445678999999887643
No 443
>PF05404 TRAP-delta: Translocon-associated protein, delta subunit precursor (TRAP-delta); InterPro: IPR008855 This family consists of several eukaryotic translocon-associated protein, delta subunit precursors (TRAP-delta or SSR-delta). The exact function of this protein is unknown [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=21.75 E-value=3e+02 Score=19.40 Aligned_cols=24 Identities=29% Similarity=0.432 Sum_probs=12.1
Q ss_pred eEEEEEEeecCCCeEEEeeCCEeCc
Q psy14532 20 VSLKCIATGNPTPHISWKLDGYPLA 44 (258)
Q Consensus 20 v~l~C~~~~~~~~~v~W~~~~~~~~ 44 (258)
.+|.|.- +.....+.+.-+|+.++
T Consensus 47 Fsl~C~n-~~~~~~LyAeV~Gk~~P 70 (167)
T PF05404_consen 47 FSLKCSN-GAKNISLYAEVNGKILP 70 (167)
T ss_pred EEEEeCC-CCcCccEEEEECCEEEE
Confidence 4566643 22234566666665443
No 444
>PRK14081 triple tyrosine motif-containing protein; Provisional
Probab=21.45 E-value=5.9e+02 Score=22.76 Aligned_cols=194 Identities=14% Similarity=0.105 Sum_probs=109.1
Q ss_pred eeecCCCceEEEEEEeecCCCeEE-E-eeCCEeCcCCccccceecccceeeccccccceeeeeCCcEEEeecccCCCceE
Q psy14532 12 QTLQPGPPVSLKCIATGNPTPHIS-W-KLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGV 89 (258)
Q Consensus 12 ~~~~~g~~v~l~C~~~~~~~~~v~-W-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~ 89 (258)
.....|+++.+.|.+.+.....+. | .++|..+..... ..+..+. . .+.-+|.
T Consensus 396 ~~~lvG~~i~i~v~a~gg~~~lY~f~ik~ng~~ve~~~Y----------------------~~~~~~~---f-~P~~~G~ 449 (667)
T PRK14081 396 KHILKGEEIKIRVIAEGGTNLRYSFIIKKDGKEEEKIDY----------------------GKNNWVN---F-IPEEKGN 449 (667)
T ss_pred CceEeCCeEEEEEEecCCCeEEEEEEEEECCEEEEEeec----------------------ccccEEE---E-EECCCee
Confidence 456789999999998875444333 3 346655432200 0111222 2 5567899
Q ss_pred EEEEEEeCCcc-----eeeceEEEEEec-CCe-ec---cCCCcceecCCcEEEEeeeCcccCceEEEE--eCCcccCCCc
Q psy14532 90 YWCTATNKQGR-----SSSQNVHISVTG-APF-VR---PMGNVSAIAGEPLYLGCPVAGYPIESITWQ--KGVQQLPLNR 157 (258)
Q Consensus 90 Y~C~~~~~~~~-----~~~~~~~l~v~~-~~~-~~---~~~~~~~~~g~~~~l~C~~~~~~~~~i~W~--~~~~~~~~~~ 157 (258)
|+-.+.-.... .....+.+.|.. .|. +. .+.......|+.+++.|.+.+.....+..+ .+|..+...
T Consensus 450 Y~IeV~vKdk~S~~~yD~~k~v~l~V~e~~P~~i~~il~~~~~~~~vg~~i~~~~~~~~~k~v~y~y~~~~NG~~v~~t- 528 (667)
T PRK14081 450 YELEVRVKDKYSDKEYDAHTIVYIKVHEYIPAEIDYILLPVKEYYLVGDDIEIEVIIQNTKDVLIKYILKINGHKVEET- 528 (667)
T ss_pred EEEEEEEecccCchhcccceEEEEEEeccCceeeeeEEecccccEEeCCEEEEEEEEeCCCeEEEEEEEEECCEEEEEe-
Confidence 99987754321 223667777764 332 11 233455778999999999877444444332 244333111
Q ss_pred ceEEecCCeEEEEecccCCCCcEEEEEEEeCCCC-----CccceEEEEeecCCccccC---CCCCccCCCCeeeEEEEec
Q psy14532 158 RQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGR-----SSSQNVHISVTVPPKIAPF---EFQPDLHSGDRAGVQCLVT 229 (258)
Q Consensus 158 ~~~~~~~~~l~i~~~~~~~~~g~y~C~~~~~~~~-----~~~~~~~l~v~~~p~~~~~---~~~~~~~~g~~~~l~C~~~ 229 (258)
....+..+.+. + .-+|.|+-.+.-.... .....+.+.|..+..+... ........|+.+++...+.
T Consensus 529 --~Ys~~~~ysf~---P-~~~GkY~I~V~aKn~~s~~~~D~~k~v~~~V~e~~pi~nt~~~~~~~~~~~n~~~t~~~~~~ 602 (667)
T PRK14081 529 --DYIKNKKYKFI---P-KCSGKYTIEVLAKNIKSTEEYDSKKEVKFYVREALPITNTKIKTSKKKFKCNEEVTFSVKSE 602 (667)
T ss_pred --eccccceEEEe---e-cCCceEEEEEEEcccccccccccceEEEEEEcCCCCceeeEEEeecceEEcCCeEEEEEEcc
Confidence 11233445554 3 5679998877644321 2345667777765433322 3455677899999998885
Q ss_pred cCCCCceeEE
Q psy14532 230 KGDPPLTISW 239 (258)
Q Consensus 230 ~~~p~~~~~W 239 (258)
+|.. ..+.+
T Consensus 603 gg~~-v~Yef 611 (667)
T PRK14081 603 GGKD-VCYEF 611 (667)
T ss_pred CCCc-EEEEE
Confidence 4443 34443
No 445
>PHA03289 envelope glycoprotein I; Provisional
Probab=21.26 E-value=2.5e+02 Score=22.09 Aligned_cols=24 Identities=21% Similarity=0.311 Sum_probs=20.1
Q ss_pred cEEEeecccCCCceEEEEEEEeCCc
Q psy14532 75 TLLIENVQKDHDRGVYWCTATNKQG 99 (258)
Q Consensus 75 ~l~i~~~~~~~d~G~Y~C~~~~~~~ 99 (258)
-|.|.+. +.+|+|.|.-++.-...
T Consensus 123 LL~I~~P-r~~DSGiYyLRV~Ldga 146 (352)
T PHA03289 123 LLTIIEP-RMSDTGIYYIRVSLAGR 146 (352)
T ss_pred EEEeCCC-CcccCeeEEEEEEeCCC
Confidence 3679999 99999999999986644
No 446
>PHA03292 envelope glycoprotein I; Provisional
Probab=20.27 E-value=2.5e+02 Score=22.75 Aligned_cols=24 Identities=21% Similarity=0.239 Sum_probs=20.3
Q ss_pred cEEEeecccCCCceEEEEEEEeCCc
Q psy14532 75 TLLIENVQKDHDRGVYWCTATNKQG 99 (258)
Q Consensus 75 ~l~i~~~~~~~d~G~Y~C~~~~~~~ 99 (258)
-|.|.+. +.+|+|.|.-++.-...
T Consensus 129 LL~I~~P-~~~DSGiY~LRV~Ldga 152 (413)
T PHA03292 129 LLNITGP-QPADSGAYILRVKLDHA 152 (413)
T ss_pred EEEeCCC-CcccceeEEEEEEeCCC
Confidence 4679999 99999999999987653
Done!