RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14532
(258 letters)
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30,
N-terminal eight IG domains...; immunoglobulin domain;
HET: NAG NDG; 4.19A {Drosophila melanogaster}
Length = 816
Score = 242 bits (620), Expect = 3e-75
Identities = 97/254 (38%), Positives = 143/254 (56%), Gaps = 14/254 (5%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
P + F ++T++PGP V LKC+A GNPTP ISW+LDG +A + Q+
Sbjct: 430 PVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDR-----------YQV 478
Query: 63 PLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGNV 122
L I +V + D G+Y C A +K G + + ++V G P++R M
Sbjct: 479 GQYVTVNGDVVSYLNITSVHAN-DGGLYKCIAKSKVGVAEH-SAKLNVYGLPYIRQMEKK 536
Query: 123 SAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYW 182
+ +AGE L + CPVAGYPI+SI W++ + LP+NR+QKVFPNGTL+IENV+++ D+ Y
Sbjct: 537 AIVAGETLIVTCPVAGYPIDSIVWERDNRALPINRKQKVFPNGTLIIENVERNSDQATYT 596
Query: 183 CTATNKQGRSSSQNVHISVTVPPKIAPFEFQP-DLHSGDRAGVQCLVTKGDPPLTISWLK 241
C A N++G S+ ++ + V V P+I PF F+ G + C V GD PL I W
Sbjct: 597 CVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTL 656
Query: 242 NGLPILSAMGVGRK 255
+G I +G+
Sbjct: 657 DGQAISEDLGITTS 670
Score = 185 bits (471), Expect = 5e-54
Identities = 65/244 (26%), Positives = 99/244 (40%), Gaps = 29/244 (11%)
Query: 12 QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVF 71
+ + G + + C G P I W+ D + LP+NR+QKVF
Sbjct: 536 KAIVAGETLIVTCPVAGYPIDSIVWERDN-------------------RALPINRKQKVF 576
Query: 72 PNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMG--NVSAIAGEP 129
PNGTL+IENV+++ D+ Y C A N++G S+ ++ + V P + P A G+
Sbjct: 577 PNGTLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQY 636
Query: 130 LYLGCPVAGYPI-ESITWQKGVQQLPLNRR----QKVFPNGTLLIENVQKDHDRGVYWCT 184
L L C V G + +I W Q + + + L IE V+ G + C
Sbjct: 637 LTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEAS-HAGNFTCH 695
Query: 185 ATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISWLKNGL 244
A N G ++V VPP+ G A V+C G P ++W K
Sbjct: 696 ARNLAGHQQFT-TPLNVYVPPRWILEPTDKAFAQGSDAKVECKAD-GFPKPQVTWKKAVG 753
Query: 245 PILS 248
Sbjct: 754 DTPG 757
Score = 161 bits (409), Expect = 2e-45
Identities = 55/247 (22%), Positives = 94/247 (38%), Gaps = 34/247 (13%)
Query: 8 KFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRR 67
KF +T ++L C A G P P W + + LN R
Sbjct: 254 KFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQA-------------VVLNDR 300
Query: 68 QKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP-FVRPMGNVSAIA 126
K +GTL+I++ + D G Y C N G S + ++VT +
Sbjct: 301 VKQV-SGTLIIKDAVVE-DSGKYLCVVNNSVGGESVE-TVLTVTAPLSAKIDPPTQTVDF 357
Query: 127 GEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTAT 186
G P C G PI++++W K + + + L IE+V+K+ D+G+Y C
Sbjct: 358 GRPAVFTCQYTGNPIKTVSWMKDGKAIGHS-------ESVLRIESVKKE-DKGMYQCFVR 409
Query: 187 NKQGRSSSQNVHISVTVPPKIAPFEFQPDLHS-----GDRAGVQCLVTKGDPPLTISWLK 241
N + + + + + + P + G ++C+ G+P ISW
Sbjct: 410 NDRESAEA---SAELKLGGRFDPPVIRQAFQEETMEPGPSVFLKCVAG-GNPTPEISWEL 465
Query: 242 NGLPILS 248
+G I +
Sbjct: 466 DGKKIAN 472
Score = 160 bits (406), Expect = 4e-45
Identities = 57/255 (22%), Positives = 95/255 (37%), Gaps = 42/255 (16%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
QT+ G P C TGNP +SW DG +
Sbjct: 344 LSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHS---------------- 387
Query: 63 PLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGR-SSSQNVHISVTGAP--FVRPM 119
L IE+V+K+ D+G+Y C N + +S + + P +
Sbjct: 388 ----------ESVLRIESVKKE-DKGMYQCFVRNDRESAEASAELKLGGRFDPPVIRQAF 436
Query: 120 GNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKV--------FPNGTLLIEN 171
+ G ++L C G P I+W+ +++ N R +V L I +
Sbjct: 437 QEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITS 496
Query: 172 VQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKG 231
V + D G+Y C A +K G + + ++V P I E + + +G+ V C V G
Sbjct: 497 VHAN-DGGLYKCIAKSKVGVAEH-SAKLNVYGLPYIRQME-KKAIVAGETLIVTCPVA-G 552
Query: 232 DPPLTISWLKNGLPI 246
P +I W ++ +
Sbjct: 553 YPIDSIVWERDNRAL 567
Score = 155 bits (394), Expect = 2e-43
Identities = 52/260 (20%), Positives = 87/260 (33%), Gaps = 36/260 (13%)
Query: 12 QTLQPGPPVSLKCIA---TGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQ 68
+ + G +KC+ + +SW D + +
Sbjct: 148 EHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEEN--------------YFPGAEYDGKY 193
Query: 69 KVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSS--SQNVHISVTGAP---------FVR 117
V P+G L I V + Y C ++ + S V P +
Sbjct: 194 LVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKVVSLA 253
Query: 118 PMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFP-----NGTLLIENV 172
+ + L CP GYP+ W K ++ + + +GTL+I++
Sbjct: 254 KFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDA 313
Query: 173 QKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGD 232
+ D G Y C N G S + ++VT P + G A C T G+
Sbjct: 314 VVE-DSGKYLCVVNNSVGGESVE-TVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYT-GN 370
Query: 233 PPLTISWLKNGLPILSAMGV 252
P T+SW+K+G I + V
Sbjct: 371 PIKTVSWMKDGKAIGHSESV 390
Score = 155 bits (393), Expect = 3e-43
Identities = 43/261 (16%), Positives = 81/261 (31%), Gaps = 44/261 (16%)
Query: 11 QQTLQPGPPVSLKCIATGNPTPHISW-KLDGYPLAGDRHENKNRIGEARVQQLPLNRRQK 69
+ ++C A+GNP P I W + DG + + ++
Sbjct: 48 RIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVG------------------DVPGLRQ 89
Query: 70 VFPNGTLLIENVQ-----KDHDRGVYWCTATNKQGRSSSQNVHISVTGAP-FVRPMGNVS 123
+ +G L+ + ++ VY C A N+ G S++VH+ A + +
Sbjct: 90 ISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEH 149
Query: 124 AIAGEPLYLGCPV---AGYPIESITWQK-----GVQQLPLNRRQKVFPNGTLLIENVQKD 175
I G + C + +E ++W + + V P+G L I V +
Sbjct: 150 VIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPE 209
Query: 176 HDRGVYWCTATNKQGRSSSQNVHISVTV---------PPKIAPFEFQPD-LHSGDRAGVQ 225
Y C ++ + + V P ++ +F +
Sbjct: 210 DGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKVVSLAKFDMKTYSGSSTMALL 269
Query: 226 CLVTKGDPPLTISWLKNGLPI 246
C G P W K
Sbjct: 270 CPAQ-GYPVPVFRWYKFIEGT 289
Score = 143 bits (363), Expect = 3e-39
Identities = 51/207 (24%), Positives = 78/207 (37%), Gaps = 26/207 (12%)
Query: 7 YKFIQQTLQPGPPVSLKCIATGNPTP-HISWKLDGYPLAGDRHENKNRIGEARVQQLPLN 65
+ F + Q G ++L C G P +I W LDG ++ D +R+G
Sbjct: 624 FAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGR--------- 674
Query: 66 RRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP-FVRPMGNVSA 124
L IE V+ G + C A N G ++V P ++ + +
Sbjct: 675 ------RGSVLTIEAVEAS-HAGNFTCHARNLAGHQQFT-TPLNVYVPPRWILEPTDKAF 726
Query: 125 IAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQK------VFPNGTLLIENVQKDHDR 178
G + C G+P +TW+K V P + GTL ++N+QK +
Sbjct: 727 AQGSDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVEEGTLHVDNIQKT-NE 785
Query: 179 GVYWCTATNKQGRSSSQNVHISVTVPP 205
G Y C A N G S + ISV
Sbjct: 786 GYYLCEAINGIGSGLSAVIMISVQAHH 812
Score = 121 bits (304), Expect = 2e-31
Identities = 32/184 (17%), Positives = 68/184 (36%), Gaps = 13/184 (7%)
Query: 76 LLIENVQKDHDRGVYWCTATNKQGRSS-SQNVHISVTGAP-FVR-PMGNVSAIAGEPLYL 132
+ + N + ++ A G + + N + P F++ P + +
Sbjct: 1 MNMPNERLK-WLMLFAAVALIACGSQTLAANPPDADQKGPVFLKEPTNRIDFSNSTGAEI 59
Query: 133 GCPVAGYPIESITWQK--GVQQLPLNRRQKVFPNGTLLIENVQ-----KDHDRGVYWCTA 185
C +G P+ I W + G + +++ +G L+ + ++ VY C A
Sbjct: 60 ECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLA 119
Query: 186 TNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTK--GDPPLTISWLKNG 243
N+ G S++VH+ V + + G+ A ++CL+ D +SW +
Sbjct: 120 RNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDE 179
Query: 244 LPIL 247
Sbjct: 180 EENY 183
Score = 80.0 bits (197), Expect = 3e-17
Identities = 29/112 (25%), Positives = 44/112 (39%), Gaps = 14/112 (12%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
P+ I + + G ++C A G P P ++WK G+ L
Sbjct: 715 PRWILEPTDKAFAQGSDAKVECKADGFPKPQVTWKKAVGDTPGEYK------------DL 762
Query: 63 PLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP 114
+ +V GTL ++N+QK + G Y C A N G S + ISV
Sbjct: 763 KKSDNIRV-EEGTLHVDNIQKT-NEGYYLCEAINGIGSGLSAVIMISVQAHH 812
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin
superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus
norvegicus}
Length = 403
Score = 204 bits (520), Expect = 6e-64
Identities = 69/260 (26%), Positives = 107/260 (41%), Gaps = 35/260 (13%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGN-PTPHISWKLDGYPLAGDRHENKNRIGEARVQQ 61
+ + G V L C A + P I WK DG LA +
Sbjct: 22 LHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILALGMDD------------ 69
Query: 62 LPLNRRQKVFPNGTLLIENVQ----KDHDRGVYWCTAT-NKQGRSSSQNVHISVTGAP-F 115
R++ PNG+LLI+N+ D G+Y C A+ G S+ + V G F
Sbjct: 70 -----RKQQLPNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGPLRF 124
Query: 116 VRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKG---VQQLPLNRRQKVFPNGTLLIENV 172
+ +++A G+ + L C V G P+ +I WQK + +P + R V P+G L I +
Sbjct: 125 LSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGALQISRL 184
Query: 173 QKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKI-APFEFQPDLHS-----GDRAGVQC 226
Q D GVY C+A N + + + P + F + G A ++C
Sbjct: 185 QPG-DSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLEC 243
Query: 227 LVTKGDPPLTISWLKNGLPI 246
V+ G PP + +WL+ I
Sbjct: 244 CVS-GYPPPSFTWLRGEEVI 262
Score = 196 bits (499), Expect = 7e-61
Identities = 71/245 (28%), Positives = 104/245 (42%), Gaps = 28/245 (11%)
Query: 12 QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVF 71
T G V LKC G+P P I W+ + L +P + R V
Sbjct: 131 ITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDL----------------NPIPGDSRVVVL 174
Query: 72 PNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP-------FVRPMGNVSA 124
P+G L I +Q D GVY C+A N + + + P F++ NV A
Sbjct: 175 PSGALQISRLQPG-DSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIA 233
Query: 125 IAGEPLYLGCPVAGYPIESITWQKGVQQLPL-NRRQKVFPNGTLLIENVQKDHDRGVYWC 183
I G+ L C V+GYP S TW +G + + L +++ + LLI NV D D G Y C
Sbjct: 234 IEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGSNLLISNVTDD-DSGTYTC 292
Query: 184 TATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISWLKNG 243
T K S+ ++V VPP + +C V+ G P T++W+KNG
Sbjct: 293 VVTYKNENISAS-AELTVLVPPWFLNHPSNLYAYESMDIEFECAVS-GKPVPTVNWMKNG 350
Query: 244 LPILS 248
++
Sbjct: 351 DVVIP 355
Score = 147 bits (373), Expect = 3e-42
Identities = 45/203 (22%), Positives = 73/203 (35%), Gaps = 23/203 (11%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
+ + G L+C +G P P +W +
Sbjct: 222 LYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQ------------------ 263
Query: 63 PLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP-FVRPMGN 121
+++ + LLI NV D D G Y C T K S+ ++V P F+ N
Sbjct: 264 LRSKKYSLLGGSNLLISNVTDD-DSGTYTCVVTYKNENISAS-AELTVLVPPWFLNHPSN 321
Query: 122 VSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVY 181
+ A + C V+G P+ ++ W K + + ++ L I V K D G Y
Sbjct: 322 LYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIVGGSNLRILGVVKS-DEGFY 380
Query: 182 WCTATNKQGRSSSQNVHISVTVP 204
C A N+ G + S + + V P
Sbjct: 381 QCVAENEAGNAQS-SAQLIVPKP 402
Score = 105 bits (264), Expect = 1e-26
Identities = 46/173 (26%), Positives = 69/173 (39%), Gaps = 17/173 (9%)
Query: 94 ATNKQGRSSSQNVHISVTGAP-FVRPMGNVSAIAGEPLYLGCPVAG-YPIESITWQKGVQ 151
++ SS + H + FV + + G + L C + I W+K
Sbjct: 3 WGSELE-SSHHHHHHGGRRSLHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGL 61
Query: 152 QLPLNR--RQKVFPNGTLLIENVQ----KDHDRGVYWCTAT-NKQGRSSSQNVHISVTVP 204
L L R++ PNG+LLI+N+ D G+Y C A+ G S+ + V P
Sbjct: 62 ILALGMDDRKQQLPNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGP 121
Query: 205 PKIAPFEFQPD---LHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSAMGVGR 254
+ F Q + GD ++C V GDP TI W KN + G R
Sbjct: 122 LR---FLSQTESITAFMGDTVLLKCEVI-GDPMPTIHWQKNQQDLNPIPGDSR 170
Score = 73.3 bits (180), Expect = 3e-15
Identities = 20/111 (18%), Positives = 35/111 (31%), Gaps = 21/111 (18%)
Query: 1 SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQ 60
P + + +C +G P P ++W +G
Sbjct: 311 VPPWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNG-------------------D 351
Query: 61 QLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVT 111
+ + ++ L I V K D G Y C A N+ G + S + + V
Sbjct: 352 VVIPSDYFQIVGGSNLRILGVVKS-DEGFYQCVAENEAGNAQS-SAQLIVP 400
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo
sapiens} PDB: 3p40_A*
Length = 404
Score = 197 bits (503), Expect = 2e-61
Identities = 56/257 (21%), Positives = 89/257 (34%), Gaps = 36/257 (14%)
Query: 11 QQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKV 70
+ P + ++C A GNP P W + + R
Sbjct: 26 DHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDP----------------RVSMR 69
Query: 71 FPNGTLLIENV---QKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP--FVRPMGNVSAI 125
+GTL+I+ + + G Y C A NK G + S + + V+ +P + V
Sbjct: 70 RRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDPVVVQ 129
Query: 126 AGEPLYLGC-PVAGYPIESITWQK-GVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWC 183
G PL L C P G P I W ++ + ++R NG L NV + Y C
Sbjct: 130 EGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNGDLYFSNVMLQDMQTDYSC 189
Query: 184 TATNKQGRSSSQNVHISVTV----------PPKIAPFEFQPDLH--SGDRAGVQCLVTKG 231
A + Q ++ V P + P G ++C+ + G
Sbjct: 190 NARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIAS-G 248
Query: 232 DPPLTISWLKNGLPILS 248
P I+W K G + S
Sbjct: 249 VPTPDIAWYKKGGDLPS 265
Score = 167 bits (425), Expect = 8e-50
Identities = 63/270 (23%), Positives = 98/270 (36%), Gaps = 46/270 (17%)
Query: 8 KFIQQTLQP-----GPPVSLKCIAT-GNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQ 61
+ ++ L P G P++L+C G P+P I W
Sbjct: 117 LWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEP------------------ 158
Query: 62 LPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVT---------- 111
+ ++R NG L NV + Y C A + Q ++
Sbjct: 159 ITQDKRVSQGHNGDLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAER 218
Query: 112 GAPFVRPMG---NVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLL 168
F+ P G + + G L L C +G P I W K LP ++ + N L
Sbjct: 219 TPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKAKFENFNKALR 278
Query: 169 IENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQP---DLHSGDRAGVQ 225
I NV + D G Y+C A+NK G + + V P + +P L G+ +
Sbjct: 279 ITNVSE-EDSGEYFCLASNKMGSIRHT-ISVRVKAAPY---WLDEPKNLILAPGEDGRLV 333
Query: 226 CLVTKGDPPLTISWLKNGLPILSAMGVGRK 255
C G+P T+ W+ NG P+ SA +
Sbjct: 334 CRAN-GNPKPTVQWMVNGEPLQSAPPNPNR 362
Score = 141 bits (358), Expect = 5e-40
Identities = 54/194 (27%), Positives = 82/194 (42%), Gaps = 28/194 (14%)
Query: 12 QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVF 71
Q + G + L+CIA+G PTP I+W G LP ++ +
Sbjct: 232 QMVLRGMDLLLECIASGVPTPDIAWYKKG-------------------GDLPSDKAKFEN 272
Query: 72 PNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP-FVRPMGNVSAIAGEPL 130
N L I NV + D G Y+C A+NK G + + V AP ++ N+ GE
Sbjct: 273 FNKALRITNVSE-EDSGEYFCLASNKMGSIRHT-ISVRVKAAPYWLDEPKNLILAPGEDG 330
Query: 131 YLGCPVAGYPIESITWQKG---VQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATN 187
L C G P ++ W +Q P N ++V T++ + Q R VY C +N
Sbjct: 331 RLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREV-AGDTIIFRDTQIS-SRAVYQCNTSN 388
Query: 188 KQGRSSSQNVHISV 201
+ G + N +SV
Sbjct: 389 EHGYLLA-NAFVSV 401
Score = 107 bits (268), Expect = 3e-27
Identities = 30/152 (19%), Positives = 56/152 (36%), Gaps = 9/152 (5%)
Query: 105 NVHISVTGAP--FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLN---RRQ 159
++ +T P + + + + + C G P S W + + + R
Sbjct: 8 SIQNELTQPPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVS 67
Query: 160 KVFPNGTLLIENV---QKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQP-D 215
+GTL+I+ + + G Y C A NK G + S + + V+ P P
Sbjct: 68 MRRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDPVV 127
Query: 216 LHSGDRAGVQCLVTKGDPPLTISWLKNGLPIL 247
+ G +QC G P I W+ + + +
Sbjct: 128 VQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPI 159
Score = 75.7 bits (186), Expect = 6e-16
Identities = 30/108 (27%), Positives = 44/108 (40%), Gaps = 19/108 (17%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
P + + L PG L C A GNP P + W ++G PL Q
Sbjct: 313 PYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPL----------------QSA 356
Query: 63 PLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISV 110
P N ++V T++ + Q R VY C +N+ G + N +SV
Sbjct: 357 PPNPNREV-AGDTIIFRDTQIS-SRAVYQCNTSNEHGYLLA-NAFVSV 401
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL
structural protein; 3.30A {Oryctolagus cuniculus}
Length = 570
Score = 193 bits (492), Expect = 2e-58
Identities = 57/252 (22%), Positives = 88/252 (34%), Gaps = 28/252 (11%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPL-AGDRHENKNRIGEARVQQ 61
P K + L G + KC TG I+W D + G +
Sbjct: 198 PFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNY------------- 244
Query: 62 LPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP--FVRPM 119
+ V TL + V K D G Y C A+N G+ S + V P +
Sbjct: 245 ----KMTLVENTATLTVLKVTKG-DAGQYTCYASNVAGKDSCS-AQLGVQEPPRFIKKLE 298
Query: 120 GNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRR---QKVFPNGTLLIENVQKDH 176
+ E C + G P + W K ++ + + V L + N+ +
Sbjct: 299 PSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVE- 357
Query: 177 DRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLT 236
D G Y C A N G S+S + + V PP + G ++C + G PP
Sbjct: 358 DSGDYTCEAHNAAG-SASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQ-GTPPFQ 415
Query: 237 ISWLKNGLPILS 248
+SW K+ + S
Sbjct: 416 VSWHKDKRELRS 427
Score = 187 bits (477), Expect = 5e-56
Identities = 61/254 (24%), Positives = 91/254 (35%), Gaps = 27/254 (10%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
P K G PV+ +C G+ +SW DG L D +
Sbjct: 102 PSFARKLKDVHETLGFPVAFECRINGSEPLQVSWYKDGELLKDDAN-------------- 147
Query: 63 PLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGR-SSSQNVHISVTGAP--FVRPM 119
+ + TL I + G Y C+A+N G SSS + +S P F
Sbjct: 148 --LQTSFIHNVATLQILQTDQS-HVGQYNCSASNPLGTASSSAKLTLSEHEVPPFFDLKP 204
Query: 120 GNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKV---FPNGTLLIENVQKDH 176
+V GE C V G ITW K +++ K+ TL + V K
Sbjct: 205 VSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKG- 263
Query: 177 DRGVYWCTATNKQGRSSSQNVHISVTVPPKI-APFEFQPDLHSGDRAGVQCLVTKGDPPL 235
D G Y C A+N G+ S + V PP+ E + + +C + G P +
Sbjct: 264 DAGQYTCYASNVAGKDSCS-AQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIG-GSPEI 321
Query: 236 TISWLKNGLPILSA 249
+ W K+ I +
Sbjct: 322 KVLWYKDETEIQES 335
Score = 178 bits (453), Expect = 1e-52
Identities = 51/242 (21%), Positives = 92/242 (38%), Gaps = 25/242 (10%)
Query: 11 QQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKV 70
+ ++ +C G+P + W D + R V
Sbjct: 300 SRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSK----------------FRMSFV 343
Query: 71 FPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP-FVRPMGNVSAIAGEP 129
L + N+ + D G Y C A N G S+S + + V P F + V + G
Sbjct: 344 ESVAVLEMYNLSVE-DSGDYTCEAHNAAG-SASSSTSLKVKEPPVFRKKPHPVETLKGAD 401
Query: 130 LYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNG---TLLIENVQKDHDRGVYWCTAT 186
++L C + G P ++W K ++L ++ K+ ++ I NV D G Y C A+
Sbjct: 402 VHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSA-DIGEYQCKAS 460
Query: 187 NKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISWLKNGLPI 246
N G + I++ PP+ G+ +Q + G P++++W K+ I
Sbjct: 461 NDVGSDTCV-GSITLKAPPRFVKKLSDISTVVGEEVQLQATIE-GAEPISVAWFKDKGEI 518
Query: 247 LS 248
+
Sbjct: 519 VR 520
Score = 175 bits (446), Expect = 1e-51
Identities = 61/255 (23%), Positives = 92/255 (36%), Gaps = 29/255 (11%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
P I G P++L+C G P I+W + L
Sbjct: 6 PYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPA-------------- 51
Query: 63 PLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP----FVRP 118
+ Q +L+I V D G Y C A N G +S + + + F R
Sbjct: 52 --YKMQFKNNVASLVINKVDHS-DVGEYTCKAENSVGAVAS-SAVLVIKERKLPPSFARK 107
Query: 119 MGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVF---PNGTLLIENVQKD 175
+ +V G P+ C + G ++W K + L + + TL I +
Sbjct: 108 LKDVHETLGFPVAFECRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQS 167
Query: 176 HDRGVYWCTATNKQGR-SSSQNVHISV-TVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDP 233
G Y C+A+N G SSS + +S VPP DL G+ +C VT G
Sbjct: 168 -HVGQYNCSASNPLGTASSSAKLTLSEHEVPPFFDLKPVSVDLALGESGTFKCHVT-GTA 225
Query: 234 PLTISWLKNGLPILS 248
P+ I+W K+ I
Sbjct: 226 PIKITWAKDNREIRP 240
Score = 130 bits (328), Expect = 7e-35
Identities = 43/209 (20%), Positives = 72/209 (34%), Gaps = 33/209 (15%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
P K G V L+C G P +SW D ++L
Sbjct: 385 PVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDK-------------------REL 425
Query: 63 PLNRRQKVFPNG---TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP-FVRP 118
++ K+ ++ I NV D G Y C A+N G + I++ P FV+
Sbjct: 426 RSGKKYKIMSENFLTSIHILNVDSA-DIGEYQCKASNDVGSDTCV-GSITLKAPPRFVKK 483
Query: 119 MGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLN----RRQKVFPNGTLLIENVQK 174
+ ++S + GE + L + G S+ W K ++ TL +
Sbjct: 484 LSDISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIWISYSENIATLQFSRAEP 543
Query: 175 DHDRGVYWCTATNKQGRSSSQNVHISVTV 203
+ G Y C N+ G +++V
Sbjct: 544 A-NAGKYTCQIKNEAGTQEC---FATLSV 568
Score = 65.6 bits (160), Expect = 2e-12
Identities = 18/110 (16%), Positives = 31/110 (28%), Gaps = 17/110 (15%)
Query: 1 SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQ 60
+ P+ + K + G V L+ G ++W D + + E
Sbjct: 476 APPRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIWISYSEN--- 532
Query: 61 QLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISV 110
TL + + G Y C N+ G +SV
Sbjct: 533 ------------IATLQFSRAEPA-NAGKYTCQIKNEAGTQEC-FATLSV 568
Score = 34.8 bits (80), Expect = 0.028
Identities = 14/52 (26%), Positives = 20/52 (38%), Gaps = 7/52 (13%)
Query: 204 PPKIAPFEFQPD---LHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSAMGV 252
PP F + G+ +QC V G P + I+W K + SA
Sbjct: 5 PPY---FIEPLEHVEAAIGEPITLQCKVD-GTPEIRIAWYKEHTKLRSAPAY 52
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG
B3P; 2.60A {Homo sapiens}
Length = 304
Score = 179 bits (456), Expect = 1e-55
Identities = 58/258 (22%), Positives = 90/258 (34%), Gaps = 32/258 (12%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
P+ I + Q G S C ATG+P P ++W G + R E A
Sbjct: 7 PRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESA----- 61
Query: 63 PLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP-------- 114
L I+ ++ D VY C A N G + + ++V
Sbjct: 62 ----------GAVLRIQPLRTPRDENVYECVAQNSVGEITV-HAKLTVLREDQLPSGFPN 110
Query: 115 FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKG---VQQLPLNRRQKVFPNGTLLIEN 171
+ C +G P ITW K V N R K +G L IE+
Sbjct: 111 IDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIES 170
Query: 172 VQKDHDRGVYWCTATNKQGRSSSQNVHISVTV---PPKIAPFEFQPDLHSGDRAGVQCLV 228
++ D+G Y C ATN G S ++ V V P+ + ++ G + C+
Sbjct: 171 SEET-DQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVNITCVA 229
Query: 229 TKGDPPLTISWLKNGLPI 246
G P + W++ +
Sbjct: 230 V-GSPMPYVKWMQGAEDL 246
Score = 141 bits (358), Expect = 5e-41
Identities = 49/200 (24%), Positives = 77/200 (38%), Gaps = 26/200 (13%)
Query: 12 QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVF 71
+ ++ ++ C A+GNP P I+W D P+ N R K
Sbjct: 118 KVVERTRTATMLCAASGNPDPEITWFKDFLPVDPS----------------ASNGRIKQL 161
Query: 72 PNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISV---TGAP-FVRPMGNVSAIAG 127
+G L IE+ ++ D+G Y C ATN G S ++ V AP F + + G
Sbjct: 162 RSGALQIESSEET-DQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPG 220
Query: 128 EPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATN 187
+ + C G P+ + W +G + L P G ++E D Y C A +
Sbjct: 221 GNVNITCVAVGSPMPYVKWMQGAEDLTPEDD---MPVGRNVLELTDV-KDSANYTCVAMS 276
Query: 188 KQGRSSSQNVHISVTVPPKI 207
G + I+V PK
Sbjct: 277 SLGVIEAV-AQITVKSLPKA 295
Score = 102 bits (256), Expect = 4e-26
Identities = 33/157 (21%), Positives = 59/157 (37%), Gaps = 12/157 (7%)
Query: 109 SVTGAP-FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVF----P 163
+ P F++ + ++G C G P +TW K +++ R + +
Sbjct: 2 TGEEPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESA 61
Query: 164 NGTLLIENVQKDHDRGVYWCTATNKQGRSSSQ---NVHISVTVPPKIAPFEFQPD---LH 217
L I+ ++ D VY C A N G + V +P + P +
Sbjct: 62 GAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVE 121
Query: 218 SGDRAGVQCLVTKGDPPLTISWLKNGLPILSAMGVGR 254
A + C + G+P I+W K+ LP+ + GR
Sbjct: 122 RTRTATMLCAAS-GNPDPEITWFKDFLPVDPSASNGR 157
Score = 75.6 bits (186), Expect = 3e-16
Identities = 22/112 (19%), Positives = 37/112 (33%), Gaps = 24/112 (21%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
P+ + + PG V++ C+A G+P P++ W L +
Sbjct: 206 PRFSILPMSHEIMPGGNVNITCVAVGSPMPYVKWMQGAEDLTPEDD-------------- 251
Query: 63 PLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP 114
P G ++E D Y C A + G + I+V P
Sbjct: 252 --------MPVGRNVLELTDV-KDSANYTCVAMSSLGVIEAV-AQITVKSLP 293
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A
{Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
b.1.1.4
Length = 395
Score = 177 bits (450), Expect = 1e-53
Identities = 59/266 (22%), Positives = 83/266 (31%), Gaps = 41/266 (15%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTP-HISWKLDGYPLAGDRHENKNRIGEARVQQ 61
P L + + + P L+CI GN SWK DG
Sbjct: 7 PVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQE-------------- 52
Query: 62 LPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP-FVRPMG 120
+ G+L+ Q D G Y C A G +SS+ + T
Sbjct: 53 ---HNAALRKDEGSLVFLRPQAS-DEGHYQCFAETPAGVASSRVISFRKTYLIASPAKTH 108
Query: 121 NVSAIAGEPLYLGCPVA-GYPIESITWQKGVQQLPLN-------RRQKVFPNGTLLIENV 172
+ I G P L C + YP ITW+K + N RR P+G L V
Sbjct: 109 EKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIV 168
Query: 173 QKD--HDRGVYWCTATNKQGRSSSQNVHISVTV----------PPKIAPFEFQPDLHSGD 220
K+ D Y CTA N V + P +GD
Sbjct: 169 TKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGD 228
Query: 221 RAGVQCLVTKGDPPLTISWLKNGLPI 246
+ C+ +P ++ KNG +
Sbjct: 229 VTMIYCMYG-SNPMGYPNYFKNGKDV 253
Score = 163 bits (414), Expect = 2e-48
Identities = 54/255 (21%), Positives = 83/255 (32%), Gaps = 34/255 (13%)
Query: 12 QTLQPGPPVSLKC-IATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKV 70
+T G P L C + P P I+WK + +RR
Sbjct: 110 KTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNA------------DVTDFDRRITA 157
Query: 71 FPNGTLLIENVQKD--HDRGVYWCTATNKQGRSSSQNVHISVTGAP-----------FVR 117
P+G L V K+ D Y CTA N V + G
Sbjct: 158 GPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQY 217
Query: 118 PMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKV-----FPNGTLLIENV 172
++ A AG+ + C P+ + K + + N ++ LL +
Sbjct: 218 VSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTT 277
Query: 173 QKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIA-PFEFQPDLHSGDRAGVQCLVTKG 231
+ D GVY C N G+ ++ ++V PK E + G + C VT G
Sbjct: 278 LPE-DEGVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEKVIVVKQGQDVTIPCKVT-G 335
Query: 232 DPPLTISWLKNGLPI 246
P + W N P+
Sbjct: 336 LPAPNVVWSHNAKPL 350
Score = 153 bits (387), Expect = 2e-44
Identities = 42/201 (20%), Positives = 74/201 (36%), Gaps = 21/201 (10%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
P Y + G + C+ NP + ++ +G + G+ +
Sbjct: 213 PVPQYVSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRI----------- 261
Query: 63 PLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPF--VRPMG 120
R LL + + D GVY C N G+ ++ ++V AP +P
Sbjct: 262 ---TRHNRTSGKRLLFKTTLPE-DEGVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEK 317
Query: 121 NVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGV 180
+ G+ + + C V G P ++ W + L R + L+I+ V+ D+G
Sbjct: 318 VIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRAT--VTDSGLVIKGVKNG-DKGY 374
Query: 181 YWCTATNKQGRSSSQNVHISV 201
Y C ATN+ G + V
Sbjct: 375 YGCRATNEHGDKYF-ETLVQV 394
Score = 105 bits (264), Expect = 1e-26
Identities = 28/153 (18%), Positives = 42/153 (27%), Gaps = 5/153 (3%)
Query: 109 SVTGAP-FVRPMGNVSAIAGEPLYLGCPVAGYPI-ESITWQKGVQQLPLNRRQKVF--PN 164
V P V P L C + G +W+K +
Sbjct: 2 PVDKYPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDE 61
Query: 165 GTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGV 224
G+L+ Q D G Y C A G +SS+ + T + G +
Sbjct: 62 GSLVFLRPQAS-DEGHYQCFAETPAGVASSRVISFRKTYLIASPAKTHEKTPIEGRPFQL 120
Query: 225 QCLVTKGDPPLTISWLKNGLPILSAMGVGRKGN 257
C++ P I+W K V
Sbjct: 121 DCVLPNAYPKPLITWKKRLSGADPNADVTDFDR 153
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane,
transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo
sapiens}
Length = 291
Score = 173 bits (441), Expect = 2e-53
Identities = 55/255 (21%), Positives = 95/255 (37%), Gaps = 31/255 (12%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
Q+ + L G C A G P + G +++
Sbjct: 5 LQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQG-------------------EKI 45
Query: 63 PLNRRQKVFPNG---TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP-FVRP 118
+R V G L I N + D G+Y C AT+ +G++ V + + F
Sbjct: 46 ISTQRVVVQKEGVRSRLTIYNANIE-DAGIYRCQATDAKGQTQEATVVLEIYQKLTFREV 104
Query: 119 MGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPL--NRRQKVFPNGTLLIENVQKDH 176
+ GE + C V+ P +++W +++ + R + N L I N+ K
Sbjct: 105 VSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKS- 163
Query: 177 DRGVYWCTATNK-QGRSSSQNVHISVTVPPKIAPFEFQPDL--HSGDRAGVQCLVTKGDP 233
D G+Y C + +G +++ + V VPP I+ + + G+ C + G P
Sbjct: 164 DEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRAS-GSP 222
Query: 234 PLTISWLKNGLPILS 248
ISW +NG I
Sbjct: 223 EPAISWFRNGKLIEE 237
Score = 149 bits (379), Expect = 3e-44
Identities = 43/210 (20%), Positives = 70/210 (33%), Gaps = 25/210 (11%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
Q + G + C + +P P +SW +
Sbjct: 99 LTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTIS--------------- 143
Query: 63 PLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP----FVRP 118
+ R + N L I N+ K D G+Y C + I + P +
Sbjct: 144 --DNRFAMLANNNLQILNINKS-DEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQK 200
Query: 119 MGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFP-NGTLLIENVQKDHD 177
N +A GE + C +G P +I+W + + + N + + N L + N+ D
Sbjct: 201 SFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINS-D 259
Query: 178 RGVYWCTATNKQGRSSSQNVHISVTVPPKI 207
G Y C ATNK G + + V V
Sbjct: 260 GGPYVCRATNKAG-EDEKQAFLQVFVQHHH 288
Score = 109 bits (274), Expect = 9e-29
Identities = 30/141 (21%), Positives = 52/141 (36%), Gaps = 11/141 (7%)
Query: 115 FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNG---TLLIEN 171
+ V GE + C G P + +++ +R V G L I N
Sbjct: 7 VTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYN 66
Query: 172 VQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQP---DLHSGDRAGVQCLV 228
+ D G+Y C AT+ +G++ V + + F + G+ A V C V
Sbjct: 67 ANIE-DAGIYRCQATDAKGQTQEATVVLEIYQKLT---FREVVSPQEFKQGEDAEVVCRV 122
Query: 229 TKGDPPLTISWLKNGLPILSA 249
+ P +SWL + + +
Sbjct: 123 S-SSPAPAVSWLYHNEEVTTI 142
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein;
1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Length = 284
Score = 171 bits (434), Expect = 2e-52
Identities = 55/251 (21%), Positives = 89/251 (35%), Gaps = 26/251 (10%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
P K + L G + KC TG I+W D + +
Sbjct: 6 PFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNY------------- 52
Query: 63 PLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP--FVRPMG 120
+ V TL + V K D G Y C A+N G+ S + + V P +
Sbjct: 53 ---KMTLVENTATLTVLKVTKG-DAGQYTCYASNVAGKDSC-SAQLGVQEPPRFIKKLEP 107
Query: 121 NVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVF---PNGTLLIENVQKDHD 177
+ E C + G P + W K ++ + + ++ L + N+ + D
Sbjct: 108 SRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVE-D 166
Query: 178 RGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTI 237
G Y C A N G S+S + + V PP + G ++C + G PP +
Sbjct: 167 SGDYTCEAHNAAG-SASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQ-GTPPFQV 224
Query: 238 SWLKNGLPILS 248
SW K+ + S
Sbjct: 225 SWHKDKRELRS 235
Score = 142 bits (360), Expect = 2e-41
Identities = 43/197 (21%), Positives = 74/197 (37%), Gaps = 26/197 (13%)
Query: 11 QQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKV 70
+ ++ +C G+P + W D + R V
Sbjct: 108 SRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSK----------------FRMSFV 151
Query: 71 FPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP-FVRPMGNVSAIAGEP 129
L + N+ + D G Y C A N G S+S + + V P F + V + G
Sbjct: 152 ESVAVLEMYNLSVE-DSGDYTCEAHNAAG-SASSSTSLKVKEPPVFRKKPHPVETLKGAD 209
Query: 130 LYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNG---TLLIENVQKDHDRGVYWCTAT 186
++L C + G P ++W K ++L ++ K+ ++ I NV D G Y C A+
Sbjct: 210 VHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSA-DIGEYQCKAS 268
Query: 187 NKQGRSSSQNVHISVTV 203
N G + S+T+
Sbjct: 269 NDVGSYTC---VGSITL 282
Score = 109 bits (275), Expect = 5e-29
Identities = 34/139 (24%), Positives = 53/139 (38%), Gaps = 7/139 (5%)
Query: 115 FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVF---PNGTLLIEN 171
F +V GE C V G ITW K +++ K+ TL +
Sbjct: 8 FDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLK 67
Query: 172 VQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKI-APFEFQPDLHSGDRAGVQCLVTK 230
V K D G Y C A+N G+ S + + V PP+ E + + +C +
Sbjct: 68 VTKG-DAGQYTCYASNVAGKDSC-SAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIG- 124
Query: 231 GDPPLTISWLKNGLPILSA 249
G P + + W K+ I +
Sbjct: 125 GSPEIKVLWYKDETEIQES 143
Score = 70.2 bits (172), Expect = 2e-14
Identities = 24/113 (21%), Positives = 37/113 (32%), Gaps = 24/113 (21%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
P K G V L+C G P +SW D ++L
Sbjct: 193 PVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDK-------------------REL 233
Query: 63 PLNRRQKVFPNG---TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTG 112
++ K+ ++ I NV D G Y C A+N G + I++
Sbjct: 234 RSGKKYKIMSENFLTSIHILNVDSA-DIGEYQCKASNDVGSYTC-VGSITLKA 284
Score = 43.2 bits (102), Expect = 3e-05
Identities = 14/47 (29%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Query: 203 VPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSA 249
PP DL G+ +C VT G P+ I+W K+ I
Sbjct: 4 APPFFDLKPVSVDLALGESGTFKCHVT-GTAPIKITWAKDNREIRPG 49
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain,
vegfr-2, growth factor receptor, VEGF LI
hormone-signaling protein complex, angiogenesis; 3.20A
{Homo sapiens} PDB: 3v6b_R
Length = 772
Score = 179 bits (456), Expect = 4e-52
Identities = 55/254 (21%), Positives = 82/254 (32%), Gaps = 19/254 (7%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
++ L G + L C A I + + + NR
Sbjct: 225 DVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNR------DLK 278
Query: 63 PLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPM--- 119
+ + TL I+ V + D+G+Y C A++ + + + V PFV
Sbjct: 279 TQSGSEMKKFLSTLTIDGVTR-SDQGLYTCAASSGLM-TKKNSTFVRVHEKPFVAFGSGM 336
Query: 120 -GNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDR 178
V A GE + + GYP I W K +PL + L I V + D
Sbjct: 337 ESLVEATVGERVRIPAKYLGYPPPEIKWYKN--GIPLESNHTIKAGHVLTIMEVSER-DT 393
Query: 179 GVYWCTATNKQGR-SSSQNVHISVTVPPKIAPFEFQPD---LHSGDRAGVQCLVTKGDPP 234
G Y TN + S V + V VPP+I G + C V PP
Sbjct: 394 GNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPP 453
Query: 235 LTISWLKNGLPILS 248
I W +
Sbjct: 454 HHIHWYWQLEEECA 467
Score = 136 bits (343), Expect = 1e-36
Identities = 53/283 (18%), Positives = 93/283 (32%), Gaps = 50/283 (17%)
Query: 11 QQTLQPGPPVSLKCIATGNPTP-HISWKLDGYPLAGDRHENKNRIGEAR----------- 58
+ Q G +L C P P HI W + +
Sbjct: 432 VDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDF 491
Query: 59 --VQQLPLNRRQKVFPNG----TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTG 112
++ +N+ Q G + + +Y C A NK G + + VT
Sbjct: 492 QGGNKIEVNKNQFALIEGKNKTVSTLVIQAAN-VSALYKCEAVNKVG-RGERVISFHVTR 549
Query: 113 APFVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQK-GVQQLPLNRRQKVFP-------- 163
P + ++ E + L C E++TW K G Q LP++ + P
Sbjct: 550 GPEITLQPDMQPTEQESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTL 609
Query: 164 --------------NGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAP 209
+ ++N D+G Y C A +++ V +TV ++AP
Sbjct: 610 WKLNATMFSNSTNDILIMELKNASLQ-DQGDYVCLAQDRKT-KKRHCVVRQLTVLERVAP 667
Query: 210 -FEFQPDLHS---GDRAGVQCLVTKGDPPLTISWLKNGLPILS 248
+ + G+ V C + G+PP I W K+ ++
Sbjct: 668 TITGNLENQTTSIGESIEVSCTAS-GNPPPQIMWFKDNETLVE 709
Score = 134 bits (338), Expect = 5e-36
Identities = 38/265 (14%), Positives = 75/265 (28%), Gaps = 34/265 (12%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
P+L + T++ + + C G W + + G
Sbjct: 32 PRLSIQKDILTIKANTTLQITC--RGQRDLDWLWPNNQSGSEQRVEVTECSDGL------ 83
Query: 63 PLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMG-- 120
TL I V + D G Y C S V++ +PF+ +
Sbjct: 84 ---------FCKTLTIPKVIGN-DTGAYKCFYRETDLASVIY-VYVQDYRSPFIASVSDQ 132
Query: 121 ----NVSAIAGEPLYLGCPVAG--YPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQK 174
++ + + + C + + + +P R I +
Sbjct: 133 HGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMI 192
Query: 175 DHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQP----DLHSGDRAGVQCLVT- 229
G+ +C A S ++I V V +I P +L G++ + C
Sbjct: 193 S-YAGMVFCEAKINDESYQS-IMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTART 250
Query: 230 KGDPPLTISWLKNGLPILSAMGVGR 254
+ + + +W V R
Sbjct: 251 ELNVGIDFNWEYPSSKHQHKKLVNR 275
Score = 134 bits (337), Expect = 8e-36
Identities = 40/224 (17%), Positives = 69/224 (30%), Gaps = 12/224 (5%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
I VSL C A + +++W G + L
Sbjct: 550 GPEITLQPDMQPTEQESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTL 609
Query: 63 PLNRRQKVFP----NGTLLIENVQKDHDRGVYWCTATNKQGRSSSQ---NVHISVTGAP- 114
+ ++N D+G Y C A +++ + + + AP
Sbjct: 610 WKLNATMFSNSTNDILIMELKNASLQ-DQGDYVCLAQDRKTKKRHCVVRQLTVLERVAPT 668
Query: 115 FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLN-RRQKVFPNGTLLIENVQ 173
+ N + GE + + C +G P I W K + L + N L I V+
Sbjct: 669 ITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVR 728
Query: 174 KDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLH 217
K+ D G+Y C A + G + + + E H
Sbjct: 729 KE-DEGLYTCQACSVLGCAKV-EAFFIIEGAQEKTNLERTHHHH 770
Score = 125 bits (315), Expect = 7e-33
Identities = 52/282 (18%), Positives = 75/282 (26%), Gaps = 72/282 (25%)
Query: 12 QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVF 71
G V + G P P I W +G +PL +
Sbjct: 340 VEATVGERVRIPAKYLGYPPPEIKWYKNG---------------------IPLESNHTIK 378
Query: 72 PNGTLLIENVQKDHDRGVYWCTATNKQGR-SSSQNVHISVTGAPFVRPM----GNVSAIA 126
L I V + D G Y TN + S V + V P + S
Sbjct: 379 AGHVLTIMEVSER-DTGNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQY 437
Query: 127 GEPLYLGCPVAGYPI-ESITWQK--------------------------------GVQQL 153
G L C V P I W G ++
Sbjct: 438 GTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKI 497
Query: 154 PLNRRQKVFPNG----TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAP 209
+N+ Q G + + +Y C A NK G + + VT P+I
Sbjct: 498 EVNKNQFALIEGKNKTVSTLVIQAAN-VSALYKCEAVNKVG-RGERVISFHVTRGPEI-- 553
Query: 210 FEFQPDLH--SGDRAGVQCLVTKGDPPLTISWLKNGLPILSA 249
QPD+ + + C ++W K G L
Sbjct: 554 -TLQPDMQPTEQESVSLWCTAD-RSTFENLTWYKLGPQPLPI 593
Score = 95.2 bits (236), Expect = 2e-22
Identities = 25/170 (14%), Positives = 45/170 (26%), Gaps = 16/170 (9%)
Query: 88 GVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQ 147
++ C T +S+ ++ A L + C G W
Sbjct: 10 ALWLCVETRAASVGLP---SVSLDLPRLSIQKDILTIKANTTLQITCR--GQRDLDWLWP 64
Query: 148 KGVQQLPLNRRQKVFPNG----TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTV 203
+G TL I V + D G Y C S V++
Sbjct: 65 NNQSGSEQRVEVTECSDGLFCKTLTIPKVIGN-DTGAYKCFYRETDLASVIY-VYVQDYR 122
Query: 204 PPKIAPFEFQPDL-----HSGDRAGVQCLVTKGDPPLTISWLKNGLPILS 248
P IA Q + + + CL + + +++ +
Sbjct: 123 SPFIASVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVP 172
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation,
phosphorylation, disease MU neuronal development,
immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens}
PDB: 2v9q_A
Length = 212
Score = 166 bits (423), Expect = 1e-51
Identities = 54/212 (25%), Positives = 84/212 (39%), Gaps = 22/212 (10%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
P+++ + G P +L C A G PTP I W G + D+ + ++
Sbjct: 10 PRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHR-------- 61
Query: 63 PLNRRQKVFPNGTLLIENVQ----KDHDRGVYWCTATNKQGRSSSQNVHISVTGAP--FV 116
+ P+G+L + D GVY C A N G + S + + V F
Sbjct: 62 ------MLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFR 115
Query: 117 RPMGNVSAIAGEPLYLGC-PVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKD 175
+ +V GEP + C P G+P +I+W+K L + G L+I +K
Sbjct: 116 QNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIRGGKLMITYTRKS 175
Query: 176 HDRGVYWCTATNKQGRSSSQNVHISVTVPPKI 207
D G Y C TN G S+ ++V P
Sbjct: 176 -DAGKYVCVGTNMVGERESEVAELTVLERPSF 206
Score = 104 bits (261), Expect = 1e-27
Identities = 39/144 (27%), Positives = 63/144 (43%), Gaps = 14/144 (9%)
Query: 115 FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNR-----RQKVFPNGTLLI 169
V ++ GEP L C G P +I W KG +++ ++ + + P+G+L
Sbjct: 12 IVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFF 71
Query: 170 ENVQ----KDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPD---LHSGDRA 222
+ D GVY C A N G + S + + V + F P + G+ A
Sbjct: 72 LRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDD--FRQNPSDVMVAVGEPA 129
Query: 223 GVQCLVTKGDPPLTISWLKNGLPI 246
++C +G P TISW K+G P+
Sbjct: 130 VMECQPPRGHPEPTISWKKDGSPL 153
Score = 34.0 bits (78), Expect = 0.029
Identities = 14/57 (24%), Positives = 20/57 (35%), Gaps = 7/57 (12%)
Query: 201 VTVPPKIAPFEFQP---DLHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSAMGVGR 254
PP+ P + G+ A + C G P TI W K G + + R
Sbjct: 6 EDFPPR---IVEHPSDLIVSKGEPATLNCKAE-GRPTPTIEWYKGGERVETDKDDPR 58
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling
protein,transferase; 2.21A {Rattus norvegicus}
Length = 192
Score = 165 bits (419), Expect = 2e-51
Identities = 60/204 (29%), Positives = 79/204 (38%), Gaps = 22/204 (10%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
P + + C P P ISW + +
Sbjct: 8 PVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIK------------------ 49
Query: 63 PLNRRQKVFPNGTLL-IENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP-FVRPMG 120
+ R + NG LL I +V+ D G+Y CTA N G + + V P RP
Sbjct: 50 LFDTRYSIRENGQLLTILSVED-SDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPPI 108
Query: 121 NVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGV 180
NV I G L C G P S++W KG L N R V +G+L I NVQK+ D G
Sbjct: 109 NVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLESGSLRIHNVQKE-DAGQ 167
Query: 181 YWCTATNKQGRSSSQNVHISVTVP 204
Y C A N G + S+ V + V V
Sbjct: 168 YRCVAKNSLGTAYSKLVKLEVEVF 191
Score = 105 bits (265), Expect = 2e-28
Identities = 40/142 (28%), Positives = 62/142 (43%), Gaps = 5/142 (3%)
Query: 110 VTGAP-FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPL-NRRQKVFPNGTL 167
+ AP P+ V A+ E C V YP I+W + + L + R + NG L
Sbjct: 4 LPKAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQL 63
Query: 168 L-IENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQC 226
L I +V+ D G+Y CTA N G + + V + PKI + G +A + C
Sbjct: 64 LTILSVED-SDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPPINVKIIEGLKAVLPC 122
Query: 227 LVTKGDPPLTISWLKNGLPILS 248
G+P ++SW+K +
Sbjct: 123 TTM-GNPKPSVSWIKGDSALRE 143
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor
protein tyrosine phosphatase; HET: NAG; 2.00A {Mus
musculus} PDB: 3jxa_A*
Length = 384
Score = 170 bits (431), Expect = 6e-51
Identities = 63/252 (25%), Positives = 84/252 (33%), Gaps = 35/252 (13%)
Query: 10 IQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQK 69
+ V L C GNP PHI WKL+G + +
Sbjct: 16 MFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMD------------------FRY 57
Query: 70 VFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP--FVRPMGNVSAIAG 127
+G+LLI N K D G Y C ATN G S+ + R VS G
Sbjct: 58 SVVDGSLLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRG 117
Query: 128 EPLYLGC-PVAGYPIESITWQK-GVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTA 185
+ + L C P S W NRR G L I V+K D G Y C
Sbjct: 118 QGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQETGNLYIAKVEKS-DVGNYTCVV 176
Query: 186 TNKQGRSSSQNVHISVTVPPKIAPFEFQPDLH----------SGDRAGVQCLVTKGDPPL 235
TN + + E++P + G ++C G+P
Sbjct: 177 TNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFAL-GNPVP 235
Query: 236 TISWLK-NGLPI 246
TI W + +G PI
Sbjct: 236 TILWRRADGKPI 247
Score = 161 bits (408), Expect = 1e-47
Identities = 55/252 (21%), Positives = 89/252 (35%), Gaps = 40/252 (15%)
Query: 12 QTLQPGPPVSLKCIAT-GNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKV 70
+++ G + L C + +W + YP NRR
Sbjct: 112 VSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPS------------------YQDNRRFVS 153
Query: 71 FPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP-----------FVRPM 119
G L I V+K D G Y C TN + V+
Sbjct: 154 QETGNLYIAKVEKS-DVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFP 212
Query: 120 GNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRG 179
V A G + L C G P+ +I W++ + + ++ NG L I N Q++ D G
Sbjct: 213 ETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNGILEIPNFQQE-DAG 271
Query: 180 VYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQP---DLHSGDRAGVQCLVTKGDPPLT 236
Y C A N +G++ ++ ++ P + + + +C G P T
Sbjct: 272 SYECVAENSRGKNVAK-GQLTFYAQPN---WVQIINDIHVAMEESVFWECKAN-GRPKPT 326
Query: 237 ISWLKNGLPILS 248
WLKNG P+L+
Sbjct: 327 YRWLKNGDPLLT 338
Score = 146 bits (370), Expect = 6e-42
Identities = 56/202 (27%), Positives = 89/202 (44%), Gaps = 28/202 (13%)
Query: 3 PQLIYKFIQ-QTLQPGPPVSLKCIATGNPTPHISW-KLDGYPLAGDRHENKNRIGEARVQ 60
P++ +F + + G V L+C A GNP P I W + DG P+A
Sbjct: 205 PKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIA---------------- 248
Query: 61 QLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP-FVRPM 119
+ ++ NG L I N Q++ D G Y C A N +G++ ++ ++ P +V+ +
Sbjct: 249 ----RKARRHKSNGILEIPNFQQE-DAGSYECVAENSRGKNVAK-GQLTFYAQPNWVQII 302
Query: 120 GNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRG 179
++ E ++ C G P + W K L R ++ GTL I V D G
Sbjct: 303 NDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQI-EQGTLNITIVNLS-DAG 360
Query: 180 VYWCTATNKQGRSSSQNVHISV 201
+Y C A NK G S + +SV
Sbjct: 361 MYQCVAENKHGVIFS-SAELSV 381
Score = 107 bits (268), Expect = 3e-27
Identities = 28/123 (22%), Positives = 43/123 (34%), Gaps = 2/123 (1%)
Query: 127 GEPLYLGCPVAGYPIESITWQKGVQQLPLNR-RQKVFPNGTLLIENVQKDHDRGVYWCTA 185
+ + L C V G P I W+ + + + +G+LLI N K D G Y C A
Sbjct: 23 EKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDGSLLINNPNKTQDAGTYQCIA 82
Query: 186 TNKQGRSSSQNVHISVTVPPKIAPFEFQP-DLHSGDRAGVQCLVTKGDPPLTISWLKNGL 244
TN G S+ + + G + C L+ +W+ N
Sbjct: 83 TNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEY 142
Query: 245 PIL 247
P
Sbjct: 143 PSY 145
Score = 72.2 bits (177), Expect = 9e-15
Identities = 27/110 (24%), Positives = 36/110 (32%), Gaps = 22/110 (20%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
P + + V +C A G P P W +G L
Sbjct: 296 PNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNG-------------------DPL 336
Query: 63 PLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTG 112
R ++ GTL I V D G+Y C A NK G S + +SV
Sbjct: 337 LTRDRIQI-EQGTLNITIVNLS-DAGMYQCVAENKHGVIFS-SAELSVIA 383
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker,
immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Length = 642
Score = 173 bits (439), Expect = 3e-50
Identities = 47/251 (18%), Positives = 75/251 (29%), Gaps = 35/251 (13%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
+ + + G ++L C A NP SW ++G
Sbjct: 204 DAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWFVNGTFQQ------------------ 245
Query: 63 PLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGR-SSSQNVHISVTGAP---FVRP 118
L I N+ + + G Y C A N + + I+V P F+
Sbjct: 246 ---------STQELFIPNITVN-NSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFITS 295
Query: 119 MGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDR 178
+ + + L C + W R Q N TL + +V ++ D
Sbjct: 296 NNSNPVEDEDAVALTCEPEIQNTTYLWWVNNQSLPVSPRLQLSNDNRTLTLLSVTRN-DV 354
Query: 179 GVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQP-DLHSGDRAGVQCLVTKGDPPLTI 237
G Y C N+ S V ++V P G + C +PP
Sbjct: 355 GPYECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTYYRPGVNLSLSCHAA-SNPPAQY 413
Query: 238 SWLKNGLPILS 248
SWL +G
Sbjct: 414 SWLIDGNIQQH 424
Score = 171 bits (435), Expect = 1e-49
Identities = 49/252 (19%), Positives = 73/252 (28%), Gaps = 37/252 (14%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
+PG +SL C A NP SW +DG
Sbjct: 382 DDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLIDGNIQQ------------------ 423
Query: 63 PLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP-----FVR 117
L I N+ + + G+Y C A N S+ ++T + +
Sbjct: 424 ---------HTQELFISNITEK-NSGLYTCQANNSAS-GHSRTTVKTITVSAELPKPSIS 472
Query: 118 PMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHD 177
+ + + C + W G R Q N TL + NV + +D
Sbjct: 473 SNNSKPVEDKDAVAFTCEPEAQNTTYLWWVNGQSLPVSPRLQLSNGNRTLTLFNVTR-ND 531
Query: 178 RGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQP-DLHSGDRAGVQCLVTKGDPPLT 236
Y C N + S V + V P SG + C +P
Sbjct: 532 ARAYVCGIQNSVSANRSDPVTLDVLYGPDTPIISPPDSSYLSGANLNLSCHSA-SNPSPQ 590
Query: 237 ISWLKNGLPILS 248
SW NG+P
Sbjct: 591 YSWRINGIPQQH 602
Score = 159 bits (404), Expect = 3e-45
Identities = 44/238 (18%), Positives = 70/238 (29%), Gaps = 7/238 (2%)
Query: 15 QPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNG 74
G V L SW + + + R+ ++PN
Sbjct: 12 AEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYPNA 71
Query: 75 TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGA---PFVRPMGNVSAIAGEPLY 131
+LLI+N+ + +D G Y + V P + + + +
Sbjct: 72 SLLIQNIIQ-NDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISSNNSKPVEDKDAVA 130
Query: 132 LGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGR 191
C + W R Q N TL + NV ++ D Y C N
Sbjct: 131 FTCEPETQDATYLWWVNNQSLPVSPRLQLSNGNRTLTLFNVTRN-DTASYKCETQNPVSA 189
Query: 192 SSSQNVHISVTVPPKIAPFEFQP-DLHSGDRAGVQCLVTKGDPPLTISWLKNGLPILS 248
S +V ++V P SG+ + C +PP SW NG S
Sbjct: 190 RRSDSVILNVLYGPDAPTISPLNTSYRSGENLNLSCHAA-SNPPAQYSWFVNGTFQQS 246
Score = 141 bits (357), Expect = 9e-39
Identities = 45/242 (18%), Positives = 67/242 (27%), Gaps = 36/242 (14%)
Query: 12 QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVF 71
+ ++ V+ C W ++ L R Q
Sbjct: 121 KPVEDKDAVAFTCEPETQD-ATYLWWVNNQSLPVS------------------PRLQLSN 161
Query: 72 PNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP--FVRPMGNVSAIAGEP 129
N TL + NV ++ D Y C N S +V ++V P N S +GE
Sbjct: 162 GNRTLTLFNVTRN-DTASYKCETQNPVSARRSDSVILNVLYGPDAPTISPLNTSYRSGEN 220
Query: 130 LYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQ 189
L L C A P +W L I N+ + + G Y C A N
Sbjct: 221 LNLSCHAASNPPAQYSWFVNGTFQQ--------STQELFIPNITVN-NSGSYTCQAHNSD 271
Query: 190 GR-SSSQNVHISVTVPPKIAPFEFQPDLH--SGDRAGVQCLVTKGDPPLTISWLKNGLPI 246
+ + I+V P D + C T W N +
Sbjct: 272 TGLNRTTVTTITVYAEPPKPFITSNNSNPVEDEDAVALTCEP--EIQNTTYLWWVNNQSL 329
Query: 247 LS 248
Sbjct: 330 PV 331
Score = 124 bits (313), Expect = 9e-33
Identities = 38/195 (19%), Positives = 63/195 (32%), Gaps = 32/195 (16%)
Query: 12 QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVF 71
+ ++ V+ C T W ++G L R Q
Sbjct: 477 KPVEDKDAVAFTCEPEAQNTT-YLWWVNGQSL------------------PVSPRLQLSN 517
Query: 72 PNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP--FVRPMGNVSAIAGEP 129
N TL + NV + +D Y C N + S V + V P + + S ++G
Sbjct: 518 GNRTLTLFNVTR-NDARAYVCGIQNSVSANRSDPVTLDVLYGPDTPIISPPDSSYLSGAN 576
Query: 130 LYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQ 189
L L C A P +W+ L I + + + G Y C +N
Sbjct: 577 LNLSCHSASNPSPQYSWRINGIPQQ--------HTQVLFIAKITPN-NNGTYACFVSNLA 627
Query: 190 GRSSSQNVHISVTVP 204
+ ++ S+TV
Sbjct: 628 T-GRNNSIVKSITVS 641
Score = 64.2 bits (156), Expect = 6e-12
Identities = 21/111 (18%), Positives = 37/111 (33%), Gaps = 29/111 (26%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
I + G ++L C + NP+P SW+++G P
Sbjct: 560 DTPIISPPDSSYLSGANLNLSCHSASNPSPQYSWRINGIPQQ------------------ 601
Query: 63 PLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQG-RSSSQNVHISVTG 112
L I + + + G Y C +N R++S I+V+
Sbjct: 602 ---------HTQVLFIAKITPN-NNGTYACFVSNLATGRNNSIVKSITVSA 642
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila
melanogaster} PDB: 3pxj_A
Length = 212
Score = 159 bits (404), Expect = 8e-49
Identities = 48/216 (22%), Positives = 85/216 (39%), Gaps = 29/216 (13%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
P++I K Q ++ G S C A G+P P I W+ +G ++G +
Sbjct: 7 PEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQ--------------- 51
Query: 63 PLNRRQKVFPNGTLLIENVQ---KDHDRGVYWCTATNKQGRSSSQNVHISVTGAP----- 114
+R + G + I ++ D Y C A N G + S + +++
Sbjct: 52 --SRYTVLEQPGGISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAG 109
Query: 115 ---FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIEN 171
+ G G + + C G P +I W K ++ ++ + +G L IEN
Sbjct: 110 FPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDGFLQIEN 169
Query: 172 VQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKI 207
+++ D+G Y C A N G S+ ++ V V
Sbjct: 170 SREE-DQGKYECVAENSMGTEHSKATNLYVKVRRVG 204
Score = 99.5 bits (248), Expect = 9e-26
Identities = 31/151 (20%), Positives = 51/151 (33%), Gaps = 14/151 (9%)
Query: 109 SVTGAP-FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLN--RRQKVFPNG 165
+ P +R N G C G P SI W+K +++ R + G
Sbjct: 2 TGAHPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPG 61
Query: 166 TLLIENVQ---KDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAP----FEFQPD--- 215
+ I ++ D Y C A N G + S + +++ K P
Sbjct: 62 GISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRV 121
Query: 216 LHSGDRAGVQCLVTKGDPPLTISWLKNGLPI 246
+ G + C G+P I W+KN +
Sbjct: 122 IEVGHTVLMTCKAI-GNPTPNIYWIKNQTKV 151
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell
adhesion, immunoglobulin domain; 3.2A {Drosophila
melanogaster} PDB: 2vra_A*
Length = 217
Score = 158 bits (401), Expect = 2e-48
Identities = 54/223 (24%), Positives = 80/223 (35%), Gaps = 31/223 (13%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
P++I ++ P +L C G P P I W DG P++ +
Sbjct: 10 PRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEK-------------- 55
Query: 63 PLNRRQKVFPNGTLLIENVQ---KDHDRGVYWCTATNKQGRSSSQNVHISVTGAP--FVR 117
+ F +G L K+ D G YWC A N+ G++ S++ + + F
Sbjct: 56 --KSHRVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRV 113
Query: 118 PMGNVSAIAGEPLYLGC-PVAGYPIESITWQKGVQQLPL--------NRRQKVFPNGTLL 168
+ GE L C P G P ++ W K L + R ++ G LL
Sbjct: 114 EPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLL 173
Query: 169 IENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFE 211
I NV+ D G Y C A N G S + V V
Sbjct: 174 ISNVEPI-DEGNYKCIAQNLVGTRESSYAKLIVQVKAAAHHHH 215
Score = 104 bits (262), Expect = 9e-28
Identities = 38/153 (24%), Positives = 63/153 (41%), Gaps = 11/153 (7%)
Query: 115 FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKG---VQQLPLNRRQKVFPNGTLLIEN 171
+ ++ EP L C V G P +I W K V + F +G L
Sbjct: 12 IIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYR 71
Query: 172 VQ---KDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHS---GDRAGVQ 225
K+ D G YWC A N+ G++ S++ + + V F +P G+ A ++
Sbjct: 72 TMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRD--DFRVEPKDTRVAKGETALLE 129
Query: 226 CLVTKGDPPLTISWLKNGLPILSAMGVGRKGNP 258
C KG P T+ W+K+G+P+ + +
Sbjct: 130 CGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASS 162
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, CY receptor complex, extracellular
complex; HET: NAG; 4.30A {Homo sapiens}
Length = 423
Score = 163 bits (414), Expect = 3e-48
Identities = 26/246 (10%), Positives = 62/246 (25%), Gaps = 27/246 (10%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
+Y+ + ++L+ + W L H
Sbjct: 49 SGTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPH-------------- 94
Query: 63 PLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGNV 122
+ +++I + + G Y ++ + +S+
Sbjct: 95 ---FDLQNRGVVSMVILKMTET-QAGEYLLFIQSEATNYTIL-FTVSIRNTLLYTLRRPY 149
Query: 123 SAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNR--RQKVFPNGTLLIENVQKDHDRGV 180
L C P + W Q + V ++ +
Sbjct: 150 FRKMENQDALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVLHELFG----TD 205
Query: 181 YWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISWL 240
C A N+ GR ++ I + P+ + L G+ ++C + ++W
Sbjct: 206 IRCCARNELGRECTRLFTIDLNQTPQTTLPQLF--LKVGEPLWIRCKAVHVNHGFGLTWE 263
Query: 241 KNGLPI 246
+
Sbjct: 264 LENKAL 269
Score = 142 bits (358), Expect = 6e-40
Identities = 32/210 (15%), Positives = 67/210 (31%), Gaps = 22/210 (10%)
Query: 2 HPQLIYKFIQQTLQPGPPVSLKCIAT-GNPTPHISWKLDGYPLAGDRHENKNRIGEARVQ 60
+ Q L+ G P+ ++C A N ++W+L+ L + + R
Sbjct: 227 NQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRT- 285
Query: 61 QLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMG 120
+ + +V ++ D G Y C+++ +S +++ F+
Sbjct: 286 ---------MIRILFAFVSSVARN-DTGYYTCSSSKHPSQS----ALVTIVEKGFINATN 331
Query: 121 N---VSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHD 177
+ E YP TW + P ++ NG + + H
Sbjct: 332 SSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKG--LDNGYSISKFCNHKHQ 389
Query: 178 RGVYWCTATNKQGRSSSQNVHISVTVPPKI 207
G Y A N ++ +++ K
Sbjct: 390 PGEYIFHAENDDA-QFTKMFTLNIRSGTKH 418
Score = 141 bits (357), Expect = 7e-40
Identities = 35/242 (14%), Positives = 69/242 (28%), Gaps = 38/242 (15%)
Query: 20 VSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIE 79
+L CI+ P P + W L + E V ++
Sbjct: 157 DALVCISESVPEPIVEWVLCDSQGESCKEE-----------------SPAVVKKEEKVLH 199
Query: 80 NVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGNVSAIAGEPLYLGC-PVAG 138
+ C A N+ GR ++ + + + GEPL++ C V
Sbjct: 200 ELFG----TDIRCCARNELGRECTR-LFTIDLNQTPQTTLPQLFLKVGEPLWIRCKAVHV 254
Query: 139 YPIESITWQKGVQQLPLNRRQKV---------FPNGTLLIENVQKDHDRGVYWCTATNKQ 189
+TW+ + L ++ + +V ++ D G Y C+++
Sbjct: 255 NHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARN-DTGYYTCSSSKHP 313
Query: 190 GRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVT-KGDPPLTISWLKNGLPILS 248
+S +++ I D V K P + +W +
Sbjct: 314 SQS----ALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPC 369
Query: 249 AM 250
Sbjct: 370 EQ 371
Score = 113 bits (283), Expect = 3e-29
Identities = 16/166 (9%), Positives = 39/166 (23%), Gaps = 10/166 (6%)
Query: 86 DRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGNVSAIAGEPLYLGCPVAGYPIESIT 145
Y + + + + + V V + L V S
Sbjct: 26 KSSSYPMVSESPEDLG----CALRPQSSGTVYEAAAVEVDVSASITLQVLVDAPGNISCL 81
Query: 146 WQKGVQQLPLNRRQKVF--PNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTV 203
W L + +++I + + G Y ++ + +S+
Sbjct: 82 WVFKHSSLNCQPHFDLQNRGVVSMVILKMTET-QAGEYLLFIQSEATNYTIL-FTVSIRN 139
Query: 204 PPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSA 249
++ + C+ P + W+ S
Sbjct: 140 TLLYTL-RRPYFRKMENQDALVCISE-SVPEPIVEWVLCDSQGESC 183
Score = 45.4 bits (107), Expect = 9e-06
Identities = 5/82 (6%), Positives = 18/82 (21%), Gaps = 6/82 (7%)
Query: 177 DRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLT 236
Y + + + + + ++ +Q LV ++
Sbjct: 26 KSSSYPMVSESPEDLG----CALRPQSSGTVYEAAAV-EVDVSASITLQVLVD-APGNIS 79
Query: 237 ISWLKNGLPILSAMGVGRKGNP 258
W+ + +
Sbjct: 80 CLWVFKHSSLNCQPHFDLQNRG 101
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth
factor-receptor complex, receptor tyrosine kinase, CY
4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus
musculus}
Length = 289
Score = 158 bits (402), Expect = 1e-47
Identities = 43/252 (17%), Positives = 83/252 (32%), Gaps = 36/252 (14%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
P + + ++PG V+L+C++ G+ + W P E+
Sbjct: 5 PVIEPSGPELVVEPGETVTLRCVSNGS----VEWDGPISPYWTLDPES------------ 48
Query: 63 PLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP--FVRPMG 120
P TL N + G Y CT S+ +H+ V +
Sbjct: 49 ---------PGSTLTTRNATFK-NTGTYRCTELEDPMAGST-TIHLYVKDPAHSWNLLAQ 97
Query: 121 NVSAIAGEPLYLGCPVAGYPIE-SITWQK-GVQQLPLNRRQKVFPNGTLLIENVQKDHDR 178
V+ + G+ L C + ++ S++ + G +Q+ P +I + D
Sbjct: 98 EVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFFSPWRGFIIRKAKV-LDS 156
Query: 179 GVYWCTATNKQGRSSSQNVHISVT----VPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPP 234
Y C S+S + + V PP+I + G+ A + C T +
Sbjct: 157 NTYVCKTMVNGRESTSTGIWLKVNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVG 216
Query: 235 LTISWLKNGLPI 246
+ + +
Sbjct: 217 FNVILKRGDTKL 228
Score = 120 bits (302), Expect = 6e-33
Identities = 31/208 (14%), Positives = 58/208 (27%), Gaps = 33/208 (15%)
Query: 12 QTLQPGPPVSLKCIATG-NPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKV 70
T+ G L C+ T +S +G +
Sbjct: 99 VTVVEGQEAVLPCLITDPALKDSVSLMREGGRQ------------------VLRKTVYFF 140
Query: 71 FPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP-----FVRPMGNVSAI 125
P +I + D Y C S+S + + V + I
Sbjct: 141 SPWRGFIIRKAKV-LDSNTYVCKTMVNGRESTSTGIWLKVNRVHPEPPQIKLEPSKLVRI 199
Query: 126 AGEPLYLGCPVAGYPI-ESITWQKGVQQLPLN-----RRQKVFPNGTLLIENVQKDHDRG 179
GE + C + ++ ++G +L + + L + V D G
Sbjct: 200 RGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQ-DAG 258
Query: 180 VYWCTATNKQGRSSSQNVHISVTVPPKI 207
+Y C A+N G + + ++ V
Sbjct: 259 IYSCVASNDVG-TRTATMNFQVVESHHH 285
Score = 89.2 bits (221), Expect = 3e-21
Identities = 32/139 (23%), Positives = 49/139 (35%), Gaps = 10/139 (7%)
Query: 112 GAPFVRPMG-NVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIE 170
AP + P G + GE + L C G S+ W + P P TL
Sbjct: 3 PAPVIEPSGPELVVEPGETVTLRCVSNG----SVEWDGPIS--PYWTLDPESPGSTLTTR 56
Query: 171 NVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQP-DLHSGDRAGVQCLVT 229
N + G Y CT S+ +H+ V P Q + G A + CL+T
Sbjct: 57 NATFK-NTGTYRCTELEDPMAGST-TIHLYVKDPAHSWNLLAQEVTVVEGQEAVLPCLIT 114
Query: 230 KGDPPLTISWLKNGLPILS 248
++S ++ G +
Sbjct: 115 DPALKDSVSLMREGGRQVL 133
Score = 63.4 bits (154), Expect = 6e-12
Identities = 17/114 (14%), Positives = 32/114 (28%), Gaps = 15/114 (13%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
PQ+ + + G + C AT G + +
Sbjct: 187 PQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDT-------------KLEIPLN 233
Query: 63 PLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFV 116
+ L + V D G+Y C A+N G + + ++ V +
Sbjct: 234 SDFQDNYYKKVRALSLNAVDFQ-DAGIYSCVASNDVG-TRTATMNFQVVESHHH 285
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM;
2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
PDB: 1ie5_A
Length = 291
Score = 158 bits (402), Expect = 1e-47
Identities = 55/245 (22%), Positives = 91/245 (37%), Gaps = 25/245 (10%)
Query: 12 QTLQPGPPVSLKCIATGNPT-PHISW-KLDGYPLAGDRHENKNRIGEARVQQLPLNRRQK 69
+ G C G+ ISW +G L+ ++ R+ + +
Sbjct: 12 GEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQ---------RISVVWNDD--- 59
Query: 70 VFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP-FVRPMGNVSAIAGE 128
+ TL I N D D G+Y C T + G S V++ + F GE
Sbjct: 60 --DSSTLTIYNANID-DAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGE 116
Query: 129 PLYLGCPVAGYPIESITWQKGVQQLPL--NRRQKVFPNGTLLIENVQKDHDRGVYWCTAT 186
+ C V +I W+ + + L + R V N L I ++K D G Y C
Sbjct: 117 DAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKT-DEGTYRCEGR 175
Query: 187 NKQGRS-SSQNVHISVTVPPKIAPFEFQPDL--HSGDRAGVQCLVTKGDPPLTISWLKNG 243
+ +++ + V VPP + + + + G + C G P T+SW K+G
Sbjct: 176 ILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDAD-GFPEPTMSWTKDG 234
Query: 244 LPILS 248
PI +
Sbjct: 235 EPIEN 239
Score = 132 bits (334), Expect = 1e-37
Identities = 44/201 (21%), Positives = 74/201 (36%), Gaps = 29/201 (14%)
Query: 12 QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVF 71
Q + G + C + P I WK G + + + R V
Sbjct: 110 QEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKK-----------------DVRFIVL 152
Query: 72 PNGTLLIENVQKDHDRGVYWCTATNKQGRS-SSQNVHISVTGAPFV---RPMGNVSAIAG 127
N L I ++K D G Y C + +++ + V P V + + N +A G
Sbjct: 153 SNNYLQIRGIKKT-DEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSIVNATANLG 211
Query: 128 EPLYLGCPVAGYPIESITWQKGVQQLPLN-----RRQKVFPNGTLLIENVQKDHDRGVYW 182
+ + L C G+P +++W K + + + + L I NV K+ D Y
Sbjct: 212 QSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKN-DEAEYV 270
Query: 183 CTATNKQGRSSSQNVHISVTV 203
C A NK G ++H+ V
Sbjct: 271 CIAENKAG-EQDASIHLKVFA 290
Score = 97.6 bits (243), Expect = 2e-24
Identities = 36/139 (25%), Positives = 52/139 (37%), Gaps = 15/139 (10%)
Query: 121 NVSAIAGEPLYLGCPVAGYPIE-SITWQK--GVQQLPLNRRQKVF----PNGTLLIENVQ 173
GE + C VAG + I+W G + P +R V + TL I N
Sbjct: 11 QGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNAN 70
Query: 174 KDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPD---LHSGDRAGVQCLVTK 230
D D G+Y C T + G S V++ + F+ P G+ A + C V
Sbjct: 71 ID-DAGIYKCVVTAEDGTQSEATVNVKIFQKLM---FKNAPTPQEFKEGEDAVIVCDVV- 125
Query: 231 GDPPLTISWLKNGLPILSA 249
P TI W G ++
Sbjct: 126 SSLPPTIIWKHKGRDVILK 144
Score = 81.1 bits (200), Expect = 3e-18
Identities = 30/110 (27%), Positives = 43/110 (39%), Gaps = 16/110 (14%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
Q + T G V+L C A G P P +SW DG P+ + +++ I
Sbjct: 197 VQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHI-------- 248
Query: 63 PLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTG 112
+ L I NV K+ D Y C A NK G ++H+ V
Sbjct: 249 ------FSDDSSELTIRNVDKN-DEAEYVCIAENKAG-EQDASIHLKVFA 290
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion,
membrane, development protein; HET: NAG; 1.95A
{Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Length = 388
Score = 160 bits (406), Expect = 3e-47
Identities = 45/267 (16%), Positives = 84/267 (31%), Gaps = 46/267 (17%)
Query: 8 KFIQQ-----TLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
F+++ ++C A+GNP P I W GD
Sbjct: 5 VFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGD---------------- 48
Query: 63 PLNRRQKVFPNGTLLIENVQ-----KDHDRGVYWCTATNKQGRSSSQNVHISVTGAP-FV 116
+ +++ +G L+ + ++ VY C A N+ G S++VH+ A +
Sbjct: 49 -VPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYE 107
Query: 117 RPMGNVSAIAGEPLYLGCPV---AGYPIESITWQK-----GVQQLPLNRRQKVFPNGTLL 168
+ I G + C + +E ++W + + V P+G L
Sbjct: 108 ADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELH 167
Query: 169 IENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTV--------PPKIAPFEFQP-DLHSG 219
I V + Y C ++ + + V P+ +P +L
Sbjct: 168 IREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVA 227
Query: 220 DRAGVQCLVTKGDPPLTISWLKNGLPI 246
+ C G P + W K
Sbjct: 228 HTISLLCPAQ-GFPAPSFRWYKFIEGT 253
Score = 152 bits (386), Expect = 3e-44
Identities = 52/259 (20%), Positives = 84/259 (32%), Gaps = 35/259 (13%)
Query: 12 QTLQPGPPVSLKCIA---TGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQ 68
+ + G +KC+ + +SW D + +
Sbjct: 113 EHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEEN--------------YFPGAEYDGKY 158
Query: 69 KVFPNGTLLIENVQKDHDRGVYWCTATNKQG--RSSSQNVHISVTGAP--------FVRP 118
V P+G L I V + Y C ++ S V P
Sbjct: 159 LVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALV 218
Query: 119 MGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQK-----VFPNGTLLIENVQ 173
+ + + L CP G+P S W K ++ + +GTL+I++
Sbjct: 219 QKPLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAV 278
Query: 174 KDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDP 233
D G Y C N G S + ++VT P + G A C T G+P
Sbjct: 279 -VEDSGKYLCVVNNSVGGESVE-TVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYT-GNP 335
Query: 234 PLTISWLKNGLPILSAMGV 252
T+SW+K+G I + V
Sbjct: 336 IKTVSWMKDGKAIGHSESV 354
Score = 128 bits (324), Expect = 3e-35
Identities = 44/191 (23%), Positives = 72/191 (37%), Gaps = 26/191 (13%)
Query: 12 QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVF 71
L +SL C A G P P W + + LN R K
Sbjct: 222 LELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQA-------------VVLNDRVKQV 268
Query: 72 PNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP-FVRPMGNVSAIAGEPL 130
+GTL+I++ D G Y C N G S + ++VT + G P
Sbjct: 269 -SGTLIIKDAV-VEDSGKYLCVVNNSVGGESVE-TVLTVTAPLSAKIDPPTQTVDFGRPA 325
Query: 131 YLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQG 190
C G PI++++W K + + L IE+V+K+ D+G+Y C N +
Sbjct: 326 VFTCQYTGNPIKTVSWMK-------DGKAIGHSESVLRIESVKKE-DKGMYQCFVRNDRE 377
Query: 191 RSSSQNVHISV 201
+ + + + +
Sbjct: 378 SAEA-SAELKL 387
Score = 93.5 bits (232), Expect = 3e-22
Identities = 26/139 (18%), Positives = 52/139 (37%), Gaps = 9/139 (6%)
Query: 118 PMGNVSAIAGEPLYLGCPVAGYPIESITWQK--GVQQLPLNRRQKVFPNGTLLIENVQ-- 173
P + + C +G P+ I W + G + +++ +G L+ +
Sbjct: 10 PTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAE 69
Query: 174 ---KDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTK 230
++ VY C A N+ G S++VH+ V + + G+ A ++CL+
Sbjct: 70 DYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPS 129
Query: 231 --GDPPLTISWLKNGLPIL 247
D +SW +
Sbjct: 130 FVADFVEVVSWHTDEEENY 148
Score = 66.1 bits (161), Expect = 1e-12
Identities = 23/110 (20%), Positives = 38/110 (34%), Gaps = 28/110 (25%)
Query: 1 SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQ 60
+ QT+ G P C TGNP +SW DG +
Sbjct: 306 APLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHS-------------- 351
Query: 61 QLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISV 110
L IE+V+K+ D+G+Y C N + + + + + +
Sbjct: 352 ------------ESVLRIESVKKE-DKGMYQCFVRNDRESAEA-SAELKL 387
Score = 30.3 bits (68), Expect = 0.59
Identities = 10/50 (20%), Positives = 19/50 (38%), Gaps = 8/50 (16%)
Query: 203 VPPKIAPFEFQP----DLHSGDRAGVQCLVTKGDPPLTISWLKNGLPILS 248
P F +P D + A ++C G+P I W+++ +
Sbjct: 2 KGPV---FLKEPTNRIDFSNSTGAEIECKA-SGNPMPEIIWIRSDGTAVG 47
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus
gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB:
2om5_A
Length = 382
Score = 158 bits (400), Expect = 2e-46
Identities = 56/256 (21%), Positives = 76/256 (29%), Gaps = 37/256 (14%)
Query: 10 IQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQK 69
+ V+L C A NP WK++G L +
Sbjct: 15 LFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDS------------------RY 56
Query: 70 VFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP--FVRPMGNVSAIAG 127
G L+I N K D G Y C ATN +G S+ + V G
Sbjct: 57 RLVAGDLVISNPVKAKDAGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDPVKITEG 116
Query: 128 EPLYLGC-PVAGYPIESITWQKGVQQLPL---NRRQKVFPNGTLLIENVQKDHDRGVYWC 183
+ C P YP S W + RR G L I + D G Y C
Sbjct: 117 WGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEAS-DLGNYSC 175
Query: 184 TATNKQG----RSSSQNVHISVTV-------PPKIAPFEFQPDLHSGDRAGVQCLVTKGD 232
AT+ S+ +S+ P A F +G ++C G+
Sbjct: 176 FATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAF-GN 234
Query: 233 PPLTISWLKNGLPILS 248
P I W K S
Sbjct: 235 PVPQIKWRKLDGSQTS 250
Score = 151 bits (382), Expect = 1e-43
Identities = 53/251 (21%), Positives = 79/251 (31%), Gaps = 36/251 (14%)
Query: 11 QQTLQPGPPVSLKCIAT-GNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQK 69
+ G V C P W L+ +P RR
Sbjct: 110 PVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPAD----------------GRRFV 153
Query: 70 VFPNGTLLIENVQKDHDRGVYWCTATNKQG----RSSSQNVHISVTGAP--------FVR 117
G L I + D G Y C AT+ S+ +S+ +
Sbjct: 154 SQTTGNLYIAKTEAS-DLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAK 212
Query: 118 PMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHD 177
+ A+ G+ + L C G P+ I W+K L I+NV D
Sbjct: 213 FPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKWLS---SEPLLHIQNVD-FED 268
Query: 178 RGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTI 237
G Y C A N +GR + Q I + P + G C+ + G P +
Sbjct: 269 EGTYECEAENIKGRDTYQ-GRIIIHAQPDWLDVITDTEADIGSDLRWSCVAS-GKPRPAV 326
Query: 238 SWLKNGLPILS 248
WL++G P+ S
Sbjct: 327 RWLRDGQPLAS 337
Score = 146 bits (371), Expect = 4e-42
Identities = 51/201 (25%), Positives = 77/201 (38%), Gaps = 29/201 (14%)
Query: 3 PQLIYKFIQ-QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQ 61
P + KF G V+L+C A GNP P I W+
Sbjct: 207 PSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQ------------------ 248
Query: 62 LPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP-FVRPMG 120
+ + L I+NV D G Y C A N +GR + Q I + P ++ +
Sbjct: 249 ----TSKWLSSEPLLHIQNVD-FEDEGTYECEAENIKGRDTYQ-GRIIIHAQPDWLDVIT 302
Query: 121 NVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGV 180
+ A G L C +G P ++ W + Q L R +V G L + + D G+
Sbjct: 303 DTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEV-SGGELRFSKLVLE-DSGM 360
Query: 181 YWCTATNKQGRSSSQNVHISV 201
Y C A NK G + + ++V
Sbjct: 361 YQCVAENKHGTVYA-SAELTV 380
Score = 101 bits (254), Expect = 2e-25
Identities = 32/131 (24%), Positives = 46/131 (35%), Gaps = 2/131 (1%)
Query: 126 AGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKV-FPNGTLLIENVQKDHDRGVYWCT 184
A E + L C P + W+ +L + + G L+I N K D G Y C
Sbjct: 21 AEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDLVISNPVKAKDAGSYQCV 80
Query: 185 ATNKQGRSSSQNVHISVTVPPKIAPFEFQP-DLHSGDRAGVQCLVTKGDPPLTISWLKNG 243
ATN +G S+ + + + E P + G C P L+ WL N
Sbjct: 81 ATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNE 140
Query: 244 LPILSAMGVGR 254
P R
Sbjct: 141 FPNFIPADGRR 151
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor
tyrosine kinase, class III, recep ligand complex,
cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A
{Mus musculus}
Length = 290
Score = 155 bits (393), Expect = 2e-46
Identities = 41/262 (15%), Positives = 71/262 (27%), Gaps = 38/262 (14%)
Query: 1 SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQ 60
S P + + ++ G +SL CI + W Y
Sbjct: 11 SPPSIHPAQSELIVEAGDTLSLTCIDPDF----VRWTFKTYFN----------------- 49
Query: 61 QLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP-FVRPM 119
+ E + G Y C+ +N S +++ V
Sbjct: 50 ------EMVENKKNEWIQEKAEAT-RTGTYTCSNSNGLTSS----IYVFVRDPAKLFLVG 98
Query: 120 GNVSAIAGEPLYLGCPVAGYPIESITWQK-GVQQLPLNRRQKVFPNGTLLIENVQKDHDR 178
+ + CP+ + + + + LP + P + I+NV++ + R
Sbjct: 99 LPLFGKEDSDALVRCPLTDPQVSQYSLIECDGKSLPTDLTFVPNPKAGITIKNVKRAYHR 158
Query: 179 GVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPD----LHSGDRAGVQCLVTKGDPP 234
C A S + V K P P+ L GD V C +
Sbjct: 159 LCVRCAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTS 218
Query: 235 LTISWLKNGLPILSAMGVGRKG 256
+ WLK V
Sbjct: 219 VNSMWLKMNPQPQHIAQVKHNS 240
Score = 115 bits (290), Expect = 4e-31
Identities = 38/216 (17%), Positives = 64/216 (29%), Gaps = 38/216 (17%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISW-KLDGYPLAGDRHENKNRIGEARVQQ 61
+L + + ++C T S + DG L
Sbjct: 92 AKLFLVGLPLFGKEDSDALVRCPLTDPQVSQYSLIECDGKSL------------------ 133
Query: 62 LPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPM-- 119
P + P + I+NV++ + R C A S + V A P+
Sbjct: 134 -PTDLTFVPNPKAGITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAIKAIPVVS 192
Query: 120 ---GNVSAIAGEPLYLGCPVAGYPIE-SITWQKGVQQLPLNRRQKVF----------PNG 165
+ G+ + C + + W K Q + K
Sbjct: 193 VPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQE 252
Query: 166 TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISV 201
TL I + + D D GV+ C A N G S++ + V
Sbjct: 253 TLTISSARVD-DSGVFMCYANNTFG-SANVTTTLKV 286
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor
tyrosine kinase, growth factor cytoki dimerization,
transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Length = 524
Score = 158 bits (401), Expect = 2e-45
Identities = 42/255 (16%), Positives = 77/255 (30%), Gaps = 36/255 (14%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTP-HISWKLDGYPLAGDRHENKNRIGEARVQQ 61
P + L+ G ++ C + + +WK + N G
Sbjct: 212 PVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHG------ 265
Query: 62 LPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPM-- 119
TL I + + + D GV+ C A N G S++ + V F+
Sbjct: 266 -----DFNYERQATLTISSARVN-DSGVFMCYANNTFG-SANVTTTLEVVDKGFINIFPM 318
Query: 120 --GNVSAIAGEPLYLGCPVAGYP-IESITWQKGVQQLPLN--------RRQKVFPNGTLL 168
V GE + L +P E W + + L
Sbjct: 319 INTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELH 378
Query: 169 IENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLV 228
+ ++ + G Y +N +++ ++ V P+I ++ +QC+
Sbjct: 379 LTRLKGT-EGGTYTFLVSNSDV-NAAIAFNVYVNTKPEILTYD------RLVNGMLQCVA 430
Query: 229 TKGDPPLTISWLKNG 243
G P TI W
Sbjct: 431 A-GFPEPTIDWYFCP 444
Score = 154 bits (391), Expect = 4e-44
Identities = 31/250 (12%), Positives = 73/250 (29%), Gaps = 39/250 (15%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
P + ++ G + L C G + W +
Sbjct: 37 PSIHPGKSDLIVRVGDEIRLLCTDPGF----VKWTFEILD-------------------- 72
Query: 63 PLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP-FVRPMGN 121
+ E + + G Y CT + S +++ V +
Sbjct: 73 ----ETNENKQNEWITEKAEAT-NTGKYTCTNKHGLSNS----IYVFVRDPAKLFLVDRS 123
Query: 122 VSAIAGEPLYLGCPVAGYPIESITWQKGV-QQLPLNRRQKVFPNGTLLIENVQKDHDRGV 180
+ + CP+ + + + + + LP + R P ++I++V++ + R
Sbjct: 124 LYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLPKDLRFIPDPKAGIMIKSVKRAYHRLC 183
Query: 181 YWCTATNKQGRSSSQNVHISVTV----PPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLT 236
C+ + S+ + V P ++ + L G+ V C + +
Sbjct: 184 LHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVY 243
Query: 237 ISWLKNGLPI 246
+W +
Sbjct: 244 STWKRENSQT 253
Score = 154 bits (391), Expect = 4e-44
Identities = 40/263 (15%), Positives = 77/263 (29%), Gaps = 37/263 (14%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
+L + ++C T + S K + L
Sbjct: 115 AKLFLVDRSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQ------------------GKPL 156
Query: 63 PLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP-----FVR 117
P + R P ++I++V++ + R C+ + S+ + V A
Sbjct: 157 PKDLRFIPDPKAGIMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSV 216
Query: 118 PMGNVSAIAGEPLYLGCPVAGYPIE-SITWQKGVQQLPLNRRQKVF--------PNGTLL 168
+ GE + C + TW++ Q L + + TL
Sbjct: 217 SKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLT 276
Query: 169 IENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPD---LHSGDRAGVQ 225
I + + + D GV+ C A N G S++ + V I F ++ G+ +
Sbjct: 277 ISSARVN-DSGVFMCYANNTFG-SANVTTTLEVVDKGFINIFPMINTTVFVNDGENVDLI 334
Query: 226 CLVTKGDPPLTISWLKNGLPILS 248
P W+
Sbjct: 335 VEYEAFPKPEHQQWIYMNRTFTD 357
Score = 117 bits (294), Expect = 2e-30
Identities = 30/211 (14%), Positives = 55/211 (26%), Gaps = 34/211 (16%)
Query: 12 QTLQPGPPVSLKCIATGNPTP-HISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKV 70
+ G V L P P H W + +
Sbjct: 323 VFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSEN-----------ESNI 371
Query: 71 FPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGNVSAIAGEPL 130
L + ++ + G Y +N +++ ++ V P + ++
Sbjct: 372 RYVSELHLTRLKGT-EGGTYTFLVSNSDV-NAAIAFNVYVNTKPEI-----LTYDRLVNG 424
Query: 131 YLGCPVAGYPIESITWQKGVQQLPL-----------NRRQKVFPNGTLLIE---NVQKDH 176
L C AG+P +I W P G L+++ +
Sbjct: 425 MLQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFK 484
Query: 177 DRGVYWCTATNKQGRSSSQNVHISVTVPPKI 207
G C A N G +S + + K
Sbjct: 485 HNGTVECKAYNDVG-KTSAYFNFAFKGNNKE 514
Score = 65.8 bits (160), Expect = 1e-12
Identities = 21/105 (20%), Positives = 31/105 (29%), Gaps = 6/105 (5%)
Query: 13 TLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFP 72
T L+C+A G P P I W G + VQ L +
Sbjct: 417 TYDRLVNGMLQCVAAGFPEPTIDWYFCP----GTEQRCSASVLPVDVQTLNSSGPPFGKL 472
Query: 73 NGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVR 117
I++ G C A N G +S + + G +
Sbjct: 473 VVQSSIDSSAFK-HNGTVECKAYNDVG-KTSAYFNFAFKGNNKEQ 515
Score = 41.2 bits (96), Expect = 2e-04
Identities = 14/75 (18%), Positives = 21/75 (28%), Gaps = 6/75 (8%)
Query: 180 VYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISW 239
V + G SS +V PP I P + + GD + C + W
Sbjct: 13 VLLLLLRVQTG-SSQPSVSPGEPSPPSIHPGKSDLIVRVGDEIRLLCTDPG-----FVKW 66
Query: 240 LKNGLPILSAMGVGR 254
L +
Sbjct: 67 TFEILDETNENKQNE 81
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI
cardiomyopathy, disease mutation, disulfide bond,
immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Length = 197
Score = 149 bits (377), Expect = 6e-45
Identities = 46/213 (21%), Positives = 77/213 (36%), Gaps = 32/213 (15%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
P + + T + G L C G P P I W G ++L
Sbjct: 8 PGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFG-------------------KEL 48
Query: 63 PLNRRQKVFPNG---TLLIENVQKDHDRGVYWCTATNKQGRSSSQ---NVHISVTGAPFV 116
+R+ K+ +G TL + +++ D GVY C ATN+ G + + + P
Sbjct: 49 IQSRKYKMSSDGRTHTLTVMTEEQE-DEGVYTCIATNEVGEVETSSKLLLQATPQFHPGY 107
Query: 117 RPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNG---TLLIENVQ 173
G L L G P+ ++TW G + L + + L+++NVQ
Sbjct: 108 PLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQ 167
Query: 174 KDHDRGVYWCTATNKQGRSSSQNVHISVTVPPK 206
+ G Y +N G + + V + K
Sbjct: 168 RKTHAGKYKVQLSNVFGTVDA---ILDVEIQDK 197
Score = 110 bits (277), Expect = 4e-30
Identities = 32/146 (21%), Positives = 63/146 (43%), Gaps = 11/146 (7%)
Query: 109 SVTGAP--FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNG- 165
+++G + M +V+ GE L C + G P+ I W + ++L +R+ K+ +G
Sbjct: 2 AMSGEAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGR 61
Query: 166 --TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDL---HSGD 220
TL + +++ D GVY C ATN+ G + + + + P+ P + G
Sbjct: 62 THTLTVMTEEQE-DEGVYTCIATNEVGEVET-SSKLLLQATPQFHPGYPLKEKYYGAVGS 119
Query: 221 RAGVQCLVTKGDPPLTISWLKNGLPI 246
+ + G P ++W +
Sbjct: 120 TLRLHVMYI-GRPVPAMTWFHGQKLL 144
Score = 33.5 bits (77), Expect = 0.040
Identities = 8/30 (26%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 219 GDRAGVQCLVTKGDPPLTISWLKNGLPILS 248
G+ A + C + G P I W + G ++
Sbjct: 22 GEAAQLSCQIV-GRPLPDIKWYRFGKELIQ 50
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, IG, membrane, homphilic,
glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB:
2xy2_A* 2vaj_A
Length = 189
Score = 148 bits (375), Expect = 8e-45
Identities = 42/205 (20%), Positives = 74/205 (36%), Gaps = 22/205 (10%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
Q+ + L G C A G P + G + + RV
Sbjct: 3 LQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQ----------RVVVQ 52
Query: 63 PLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP-FVRPMGN 121
R L I N + D G+Y C AT+ +G++ V + + F +
Sbjct: 53 KEGVR------SRLTIYNANIE-DAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSP 105
Query: 122 VSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPL--NRRQKVFPNGTLLIENVQKDHDRG 179
GE + C V+ P +++W +++ + R + N L I N+ K D G
Sbjct: 106 QEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKS-DEG 164
Query: 180 VYWCTATNK-QGRSSSQNVHISVTV 203
+Y C + +G +++ + V V
Sbjct: 165 IYRCEGRVEARGEIDFRDIIVIVNV 189
Score = 111 bits (280), Expect = 1e-30
Identities = 30/141 (21%), Positives = 52/141 (36%), Gaps = 11/141 (7%)
Query: 115 FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNG---TLLIEN 171
+ V GE + C G P + +++ +R V G L I N
Sbjct: 5 VTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYN 64
Query: 172 VQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQP---DLHSGDRAGVQCLV 228
+ D G+Y C AT+ +G++ V + + F + G+ A V C V
Sbjct: 65 ANIE-DAGIYRCQATDAKGQTQEATVVLEIYQKLT---FREVVSPQEFKQGEDAEVVCRV 120
Query: 229 TKGDPPLTISWLKNGLPILSA 249
+ P +SWL + + +
Sbjct: 121 S-SSPAPAVSWLYHNEEVTTI 140
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, hematopoietic cytokine-receptor
complex, cell surface, EXTR complex; 7.80A {Homo
sapiens}
Length = 527
Score = 155 bits (392), Expect = 4e-44
Identities = 37/237 (15%), Positives = 75/237 (31%), Gaps = 31/237 (13%)
Query: 11 QQTLQPGPPVSLKCIATG-NPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQK 69
Q L+ G P+ ++C A N ++W+L+ L + + R
Sbjct: 236 QLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMI-------- 287
Query: 70 VFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPM---GNVSAIA 126
+ +V ++ D G Y C+++ +S +++ F+ +
Sbjct: 288 --RILFAFVSSVARN-DTGYYTCSSSKHPSQS----ALVTIVEKGFINATNSSEDYEIDQ 340
Query: 127 GEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTAT 186
E YP TW + P ++ ++ K H G Y A
Sbjct: 341 YEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDN-GYSISKFCNHK-HQPGEYIFHAE 398
Query: 187 NKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISWLKNG 243
N ++ +++ P++ L + C G P + +W K
Sbjct: 399 NDDA-QFTKMFTLNIRRKPQV--------LAEASASQASCFSD-GYPLPSWTWKKCS 445
Score = 153 bits (388), Expect = 1e-43
Identities = 28/247 (11%), Positives = 63/247 (25%), Gaps = 23/247 (9%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
+Y+ + ++L+ + W L H + G
Sbjct: 49 SGTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRG------- 101
Query: 63 PLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGNV 122
+++I + + G Y ++ + +S+
Sbjct: 102 ----------VVSMVILKMTET-QAGEYLLFIQSEATNYTIL-FTVSIRNTLLYTLRRPY 149
Query: 123 SAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYW 182
L C P + W ++ P E V +
Sbjct: 150 FRKMENQDALVCISESVPEPIVEWVL--CDSQGESCKEESPAVVKKEEKVLHELFGTDIR 207
Query: 183 CTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISWLKN 242
C A N+ GR ++ I + P+ + L G+ ++C + ++W
Sbjct: 208 CCARNELGRECTRLFTIDLNQTPQTTLPQL--FLKVGEPLWIRCKAVHVNHGFGLTWELE 265
Query: 243 GLPILSA 249
+
Sbjct: 266 NKALEEG 272
Score = 144 bits (363), Expect = 5e-40
Identities = 35/239 (14%), Positives = 70/239 (29%), Gaps = 40/239 (16%)
Query: 20 VSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIE 79
+L CI+ P P + W L + E V ++
Sbjct: 157 DALVCISESVPEPIVEWVLCDSQGESCKEE-----------------SPAVVKKEEKVLH 199
Query: 80 NVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGNVSAIAGEPLYLGCPVAGY 139
+ C A N+ GR ++ I + P + + GEPL++ C
Sbjct: 200 EL----FGTDIRCCARNELGRECTRLFTIDLNQTPQT-TLPQLFLKVGEPLWIRCKAVHV 254
Query: 140 PIE-SITWQKGVQQLPLNRRQK---------VFPNGTLLIENVQKDHDRGVYWCTATNKQ 189
+TW+ + L + + + +V ++ D G Y C+++
Sbjct: 255 NHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARN-DTGYYTCSSSKHP 313
Query: 190 GRSSSQNVHISVTVPPKIAPFEFQPDL--HSGDRAGVQCLVTKGDPPLTISWLKNGLPI 246
+S +++ I D + K P + +W +
Sbjct: 314 SQS----ALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRF-KAYPQIRCTWTFSRKSF 367
Score = 108 bits (270), Expect = 4e-27
Identities = 18/167 (10%), Positives = 42/167 (25%), Gaps = 12/167 (7%)
Query: 86 DRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGNVSAIAGEPLYLGCPVAGYPIESIT 145
Y + + + + + V V + L V S
Sbjct: 26 KSSSYPMVSESPEDLG----CALRPQSSGTVYEAAAVEVDVSASITLQVLVDAPGNISCL 81
Query: 146 WQKGVQQLPLNRRQKVFPNG--TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTV 203
W L + G +++I + + G Y ++ + +S+
Sbjct: 82 WVFKHSSLNCQPHFDLQNRGVVSMVILKMTET-QAGEYLLFIQSEATNYTIL-FTVSIRN 139
Query: 204 PPKIAPFEFQPDLH-SGDRAGVQCLVTKGDPPLTISWLKNGLPILSA 249
+P ++ + C+ P + W+ S
Sbjct: 140 TLLY--TLRRPYFRKMENQDALVCISE-SVPEPIVEWVLCDSQGESC 183
Score = 105 bits (264), Expect = 3e-26
Identities = 29/212 (13%), Positives = 52/212 (24%), Gaps = 45/212 (21%)
Query: 12 QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVF 71
+ P +W ++ N
Sbjct: 336 YEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDN------------------- 376
Query: 72 PNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGNVSAIAGEPLY 131
++ K H G Y A N ++ +++ P V
Sbjct: 377 -GYSISKFCNHK-HQPGEYIFHAENDDA-QFTKMFTLNIRRKPQVLA-------EASASQ 426
Query: 132 LGCPVAGYPIESITWQK--------------GVQQLPLNRRQKVFPNGTLLIENVQKDHD 177
C GYP+ S TW+K GV NR+ + + +
Sbjct: 427 ASCFSDGYPLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNMSEAI-K 485
Query: 178 RGVYWCTATNKQGRSSSQNVHISVTVPPKIAP 209
+ C A N G +S + + ++ P
Sbjct: 486 GFLVKCCAYNSLG-TSCETILLNSPGPFPFIQ 516
Score = 64.3 bits (156), Expect = 5e-12
Identities = 19/115 (16%), Positives = 36/115 (31%), Gaps = 8/115 (6%)
Query: 12 QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVF 71
Q L C + G P P +WK E + + + +
Sbjct: 417 QVLAEASASQASCFSDGYPLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQ----- 471
Query: 72 PNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGA-PFVRPMGNVSAI 125
+ N+ + + C A N G +S + + ++ G PF++ G
Sbjct: 472 -WVSSSTLNMSEAIKGFLVKCCAYNSLG-TSCETILLNSPGPFPFIQDGGTKHHH 524
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB:
2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Length = 212
Score = 145 bits (368), Expect = 1e-43
Identities = 48/221 (21%), Positives = 75/221 (33%), Gaps = 37/221 (16%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
P+ + QT G S C ATG+P P I W G ++ R
Sbjct: 7 PRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQR--------------- 51
Query: 63 PLNRRQKVFPNGT---LLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP----- 114
F +G+ L I+ ++ D +Y C A+N G S + ++V
Sbjct: 52 ---FEVIEFDDGSGSVLRIQPLRTPRDEAIYECVASNNVG-EISVSTRLTVLREDQIPRG 107
Query: 115 ---FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLN------RRQKVFPNG 165
+ C +G P ITW K + + ++ + G
Sbjct: 108 FPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIG 167
Query: 166 TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPK 206
L IE ++ D+G Y C ATN G S ++ V
Sbjct: 168 ALQIEQSEES-DQGKYECVATNSAGTRYSAPANLYVRGTKH 207
Score = 104 bits (260), Expect = 2e-27
Identities = 37/158 (23%), Positives = 67/158 (42%), Gaps = 14/158 (8%)
Query: 109 SVTGAP-FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKV-FPNGT 166
+ P F R + + ++G C G P I W K +++ R + + F +G+
Sbjct: 2 TGETPPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGS 61
Query: 167 ---LLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAP----FEFQPDLHS- 218
L I+ ++ D +Y C A+N G S + ++V +I + P L
Sbjct: 62 GSVLRIQPLRTPRDEAIYECVASNNVG-EISVSTRLTVLREDQIPRGFPTIDMGPQLKVV 120
Query: 219 --GDRAGVQCLVTKGDPPLTISWLKNGLPILSAMGVGR 254
A + C + G+P I+W K+ LP+ ++ GR
Sbjct: 121 ERTRTATMLCAAS-GNPDPEITWFKDFLPVDTSNNNGR 157
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix
bundle cytokine, receptor tyrosine kinase glycosylation;
HET: NAG BMA; 3.00A {Homo sapiens}
Length = 292
Score = 148 bits (374), Expect = 2e-43
Identities = 37/252 (14%), Positives = 73/252 (28%), Gaps = 36/252 (14%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
P + + ++PG V+L+C+ G+ + W
Sbjct: 5 PVIEPSVPELVVKPGATVTLRCVGNGS----VEWDGPP---------------------S 39
Query: 63 PLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP--FVRPMG 120
P + L N + G Y CT S+ +H+ V +
Sbjct: 40 PHWTLYSDGSSSILSTNNATFQ-NTGTYRCTEPGDPLGGSA-AIHLYVKDPARPWNVLAQ 97
Query: 121 NVSAIAGEPLYLGCPVAGYPIE-SITWQK-GVQQLPLNRRQKVFPNGTLLIENVQKDHDR 178
V + L C + +E ++ + + L + P I +
Sbjct: 98 EVVVFEDQDALLPCLLTDPVLEAGVSLVRVRGRPLMRHTNYSFSPWHGFTIHRAKF-IQS 156
Query: 179 GVYWCTATNKQGRSSSQNVHISVTV----PPKIAPFEFQPDLHSGDRAGVQCLVTKGDPP 234
Y C+A + S ++ + V PP + + G+ A + C + D
Sbjct: 157 QDYQCSALMGGRKVMSISIRLKVQKVIPGPPALTLVPAELVRIRGEAAQIVCSASSVDVN 216
Query: 235 LTISWLKNGLPI 246
+ N +
Sbjct: 217 FDVFLQHNNTKL 228
Score = 120 bits (301), Expect = 1e-32
Identities = 32/208 (15%), Positives = 57/208 (27%), Gaps = 33/208 (15%)
Query: 12 QTLQPGPPVSLKCIATG-NPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKV 70
+ L C+ T +S + L +
Sbjct: 99 VVVFEDQDALLPCLLTDPVLEAGVSLVRVR------------------GRPLMRHTNYSF 140
Query: 71 FPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPM-----GNVSAI 125
P I + Y C+A + S ++ + V P + I
Sbjct: 141 SPWHGFTIHRAKF-IQSQDYQCSALMGGRKVMSISIRLKVQKVIPGPPALTLVPAELVRI 199
Query: 126 AGEPLYLGCPVAGYPI-ESITWQKGVQQLPLNRRQKVFPN-----GTLLIENVQKDHDRG 179
GE + C + + + Q +L + ++ N TL ++ V G
Sbjct: 200 RGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQ-HAG 258
Query: 180 VYWCTATNKQGRSSSQNVHISVTVPPKI 207
Y C A+N QG S ++ V
Sbjct: 259 NYSCVASNVQG-KHSTSMFFRVVESAGN 285
Score = 84.6 bits (209), Expect = 2e-19
Identities = 25/140 (17%), Positives = 43/140 (30%), Gaps = 10/140 (7%)
Query: 115 FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQK 174
+ + G + L C G S+ W P + L N
Sbjct: 7 IEPSVPELVVKPGATVTLRCVGNG----SVEWDG--PPSPHWTLYSDGSSSILSTNNATF 60
Query: 175 DHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQP-DLHSGDRAGVQCLVTKGDP 233
+ G Y CT S+ +H+ V P + Q + A + CL+T
Sbjct: 61 Q-NTGTYRCTEPGDPLGGSA-AIHLYVKDPARPWNVLAQEVVVFEDQDALLPCLLTDPVL 118
Query: 234 PLTISWLK-NGLPILSAMGV 252
+S ++ G P++
Sbjct: 119 EAGVSLVRVRGRPLMRHTNY 138
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling
protein/receptor, growth regulation/complex, vitamin
K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Length = 195
Score = 145 bits (366), Expect = 2e-43
Identities = 41/207 (19%), Positives = 69/207 (33%), Gaps = 17/207 (8%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIA-TGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQ 61
+ T G +L+C P + W DG L
Sbjct: 3 SPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQ-------TQVP 55
Query: 62 LPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP-FVRPMG 120
L + + L I ++Q D G Y C SQ ++ + G P F+
Sbjct: 56 LGEDEQDDWIVVSQLRITSLQLS-DTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPE 114
Query: 121 NVSAIAGEPLYLGCPVAGYPI-ESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRG 179
+ + A P L C G P + W + +PL P +L + +
Sbjct: 115 DRTVAANTPFNLSCQAQGPPEPVDLLWLQD--AVPLATAPGHGPQRSLHVPGLN---KTS 169
Query: 180 VYWCTATNKQGRSSSQNVHISVTVPPK 206
+ C A N +G ++S+ I+V +P +
Sbjct: 170 SFSCEAHNAKGVTTSRTATITV-LPQQ 195
Score = 93.4 bits (232), Expect = 1e-23
Identities = 34/161 (21%), Positives = 58/161 (36%), Gaps = 22/161 (13%)
Query: 114 PFVRPMGNVSAIAGEPLYLGC-PVAGYPIESITWQKGVQQLPL------------NRRQK 160
PFV GN++ G L C + W + Q L L + +
Sbjct: 4 PFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDD 63
Query: 161 VFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQP---DLH 217
L I ++Q D G Y C SQ ++ + P F +P +
Sbjct: 64 WIVVSQLRITSLQLS-DTGQYQCLVFLGHQTFVSQPGYVGLEGLPY---FLEEPEDRTVA 119
Query: 218 SGDRAGVQCLVTKGDP-PLTISWLKNGLPILSAMGVGRKGN 257
+ + C G P P+ + WL++ +P+ +A G G + +
Sbjct: 120 ANTPFNLSCQAQ-GPPEPVDLLWLQDAVPLATAPGHGPQRS 159
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, membrane, glycoprote adhesion,
transmembrane; HET: NAG; 2.00A {Homo sapiens}
Length = 189
Score = 144 bits (364), Expect = 3e-43
Identities = 43/197 (21%), Positives = 70/197 (35%), Gaps = 25/197 (12%)
Query: 12 QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVF 71
Q + G + C + +P P +SW + + R +
Sbjct: 12 QEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTIS-----------------DNRFAML 54
Query: 72 PNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP----FVRPMGNVSAIAG 127
N L I N+ K D G+Y C + I + P + N +A G
Sbjct: 55 ANNNLQILNINKS-DEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERG 113
Query: 128 EPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFP-NGTLLIENVQKDHDRGVYWCTAT 186
E + C +G P +I+W + + + N + + N L + N+ D G Y C AT
Sbjct: 114 EEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINS-DGGPYVCRAT 172
Query: 187 NKQGRSSSQNVHISVTV 203
NK G + + V V
Sbjct: 173 NKAG-EDEKQAFLQVFV 188
Score = 105 bits (264), Expect = 3e-28
Identities = 33/137 (24%), Positives = 58/137 (42%), Gaps = 7/137 (5%)
Query: 115 FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPL--NRRQKVFPNGTLLIENV 172
F + GE + C V+ P +++W +++ + R + N L I N+
Sbjct: 5 FREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNI 64
Query: 173 QKDHDRGVYWCTATNK-QGRSSSQNVHISVTVPPKIAPFEFQPDL--HSGDRAGVQCLVT 229
K D G+Y C + +G +++ + V VPP I+ + + G+ C +
Sbjct: 65 NKS-DEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRAS 123
Query: 230 KGDPPLTISWLKNGLPI 246
G P ISW +NG I
Sbjct: 124 -GSPEPAISWFRNGKLI 139
Score = 74.8 bits (184), Expect = 1e-16
Identities = 25/109 (22%), Positives = 39/109 (35%), Gaps = 20/109 (18%)
Query: 2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQ 61
+ K T + G ++ C A+G+P P ISW +G + +
Sbjct: 98 AISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENE-------------- 143
Query: 62 LPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISV 110
+ N L + N+ D G Y C ATNK G + + V
Sbjct: 144 ----KYILKGSNTELTVRNIINS-DGGPYVCRATNKAG-EDEKQAFLQV 186
Score = 37.1 bits (86), Expect = 0.002
Identities = 9/35 (25%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 215 DLHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSA 249
+ G+ A V C V+ P +SWL + + +
Sbjct: 13 EFKQGEDAEVVCRVS-SSPAPAVSWLYHNEEVTTI 46
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane,
phosphorylation, immunoglobulin domain, membrane,
glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB: 2xy1_A*
Length = 192
Score = 143 bits (362), Expect = 7e-43
Identities = 46/200 (23%), Positives = 77/200 (38%), Gaps = 32/200 (16%)
Query: 12 QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVF 71
T + G ++ C A+G+P P ISW +G + + +
Sbjct: 14 ATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENE------------------KYILKG 55
Query: 72 PNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGNVSAIAGEPLY 131
N L + N+ D G Y C ATNK G Q + V P + + N + +
Sbjct: 56 SNTELTVRNIINS-DGGPYVCRATNKAGEDEKQ-AFLQVFVQPHIIQLKNETTYENGQVT 113
Query: 132 LGCPVAGYPIESITWQKGVQQLPLNRRQKVFP----------NGTLLIENVQKDHDRGVY 181
L C G PI ITW++ V K + +L I++V+ D G Y
Sbjct: 114 LVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLS-DSGRY 172
Query: 182 WCTATNKQGRSSSQNVHISV 201
C A ++ G +++++ +
Sbjct: 173 DCEAASRIG-GHQKSMYLDI 191
Score = 101 bits (252), Expect = 2e-26
Identities = 33/138 (23%), Positives = 54/138 (39%), Gaps = 5/138 (3%)
Query: 115 FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFP-NGTLLIENVQ 173
+ N +A GE + C +G P +I+W + + + N + + N L + N+
Sbjct: 7 MPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNII 66
Query: 174 KDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDP 233
D G Y C ATNK G Q + V V P I + + + + C G+P
Sbjct: 67 NS-DGGPYVCRATNKAGEDEKQ-AFLQVFVQPHIIQLK-NETTYENGQVTLVCDAE-GEP 122
Query: 234 PLTISWLKNGLPILSAMG 251
I+W + G
Sbjct: 123 IPEITWKRAVDGFTFTEG 140
Score = 71.8 bits (176), Expect = 2e-15
Identities = 27/110 (24%), Positives = 48/110 (43%), Gaps = 16/110 (14%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWK--LDGYPLAGDRHENKNRIGEARVQ 60
P +I + T + G V+L C A G P P I+WK +DG+ RI
Sbjct: 96 PHIIQLKNETTYENGQ-VTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRI------ 148
Query: 61 QLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISV 110
+ + +L I++V+ D G Y C A ++ G +++++ +
Sbjct: 149 -----EVKGQHGSSSLHIKDVKLS-DSGRYDCEAASRIG-GHQKSMYLDI 191
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta
trefoil, IG domain, growth factor/growth factor receptor
complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 334
Score = 145 bits (367), Expect = 5e-42
Identities = 64/285 (22%), Positives = 85/285 (29%), Gaps = 60/285 (21%)
Query: 3 PQLIYKFIQQ-TLQPGPPVSLKCIAT-GNPTPHISWKLDGYPLAGDRHENKNRIGEARVQ 60
P +Q G V L C G P W DG
Sbjct: 8 PGPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDG-------------------T 48
Query: 61 QLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHI------------ 108
L + R V L + N + D G Y C Q +V +
Sbjct: 49 GLVPSERVLV-GPQRLQVLNASHE-DSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDG 106
Query: 109 --------SVTGAP-FVRPMG----NVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPL 155
TGAP + RP ++ A + CP AG P SI+W K ++
Sbjct: 107 EDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRG 166
Query: 156 NRRQK----VFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFE 211
R +L++E+V DRG Y C NK G S Q + V P
Sbjct: 167 EHRIGGIKLRHQQWSLVMESVVPS-DRGNYTCVVENKFG-SIRQTYTLDVLERSPHRPIL 224
Query: 212 FQPDLHS-----GDRAGVQCLVTKGDPPLTISWLKNGLPILSAMG 251
+ G C V D I WLK+ S +G
Sbjct: 225 QAGLPANQTAVLGSDVEFHCKVY-SDAQPHIQWLKHVEVNGSKVG 268
Score = 129 bits (325), Expect = 7e-36
Identities = 48/217 (22%), Positives = 68/217 (31%), Gaps = 41/217 (18%)
Query: 12 QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVF 71
+ V +C A GNPTP ISW +G G+ + +
Sbjct: 133 LAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEH---------------RIGGIKLRH 177
Query: 72 PNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP------FVRPMGNVSAI 125
+L++E+V DRG Y C NK G S Q + V N +A+
Sbjct: 178 QQWSLVMESVVPS-DRGNYTCVVENKFG-SIRQTYTLDVLERSPHRPILQAGLPANQTAV 235
Query: 126 AGEPLYLGCPVAGYPIESITWQKGVQQL----------------PLNRRQKVFPNGTLLI 169
G + C V I W K V+ L +
Sbjct: 236 LGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSL 295
Query: 170 ENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPK 206
NV + D G Y C A N G S + + V +
Sbjct: 296 HNVTFE-DAGEYTCLAGNSIG-FSHHSAWLVVLPAEE 330
Score = 92.4 bits (229), Expect = 4e-22
Identities = 34/166 (20%), Positives = 51/166 (30%), Gaps = 28/166 (16%)
Query: 114 PFVRPMGNVSAIAGEPLYLGCPV-AGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENV 172
P + +G+ + L CP G P+ W K L + R V L + N
Sbjct: 10 PEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLV-GPQRLQVLNA 68
Query: 173 QKDHDRGVYWCTATNKQGRSSSQNVHISVTV---------------------PPKIAPFE 211
+ D G Y C Q +V ++ P P
Sbjct: 69 SHE-DSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPER 127
Query: 212 FQPDLHS---GDRAGVQCLVTKGDPPLTISWLKNGLPILSAMGVGR 254
L + + +C G+P +ISWLKNG +G
Sbjct: 128 MDKKLLAVPAANTVRFRCPAA-GNPTPSISWLKNGREFRGEHRIGG 172
Score = 74.7 bits (183), Expect = 1e-15
Identities = 25/113 (22%), Positives = 31/113 (27%), Gaps = 7/113 (6%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
QT G V C + PHI W + G V L
Sbjct: 223 ILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPD----GTPYVTVL 278
Query: 63 PL-NRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP 114
L + NV + D G Y C A N G S + + V A
Sbjct: 279 KTAGANTTDKELEVLSLHNVTFE-DAGEYTCLAGNSIG-FSHHSAWLVVLPAE 329
Score = 38.4 bits (89), Expect = 0.001
Identities = 11/46 (23%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Query: 204 PPKIAPFEFQP-DLHSGDRAGVQCLVTKGDPPLTISWLKNGLPILS 248
P P + + SGD + C G P W+K+G ++
Sbjct: 7 VPGPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVP 52
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold,
glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4
b.1.1.4 PDB: 2ncm_A 3ncm_A
Length = 191
Score = 141 bits (356), Expect = 6e-42
Identities = 45/206 (21%), Positives = 69/206 (33%), Gaps = 22/206 (10%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNP-TPHISW-KLDGYPLAGDRHENKNRIGEARVQ 60
Q+ Q + G C G+ ISW +G L+ ++ R+
Sbjct: 3 LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQ---------RIS 53
Query: 61 QLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP-FVRPM 119
+ + + TL I N D D G+Y C T + G S V++ + F
Sbjct: 54 VVWNDDD-----SSTLTIYNANID-DAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAP 107
Query: 120 GNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPL--NRRQKVFPNGTLLIENVQKDHD 177
GE + C V +I W+ + + L + R V N L I ++K D
Sbjct: 108 TPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKT-D 166
Query: 178 RGVYWCTATNKQGRSSSQNVHISVTV 203
G Y C I V V
Sbjct: 167 EGTYRCEGRILAR-GEINFKDIQVIV 191
Score = 100 bits (250), Expect = 3e-26
Identities = 36/143 (25%), Positives = 53/143 (37%), Gaps = 15/143 (10%)
Query: 115 FVRPMGNVSAIAGEPLYLGCPVAGYPIE-SITWQK--GVQQLPLNRRQKVFP----NGTL 167
GE + C VAG + I+W G + P +R V + TL
Sbjct: 5 VDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTL 64
Query: 168 LIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQP---DLHSGDRAGV 224
I N D D G+Y C T + G S V++ + F+ P + G+ A +
Sbjct: 65 TIYNANID-DAGIYKCVVTAEDGTQSEATVNVKIFQKLM---FKNAPTPQEFKEGEDAVI 120
Query: 225 QCLVTKGDPPLTISWLKNGLPIL 247
C V P TI W G ++
Sbjct: 121 VCDVV-SSLPPTIIWKHKGRDVI 142
Score = 74.9 bits (184), Expect = 1e-16
Identities = 21/111 (18%), Positives = 28/111 (25%), Gaps = 19/111 (17%)
Query: 1 SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQ 60
Q + G + C + P I WK G +
Sbjct: 99 QKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDV----------------- 141
Query: 61 QLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVT 111
L + R V N L I ++K D G Y C I V
Sbjct: 142 ILKKDVRFIVLSNNYLQIRGIKKT-DEGTYRCEGRILAR-GEINFKDIQVI 190
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular
adhesion, ligand-independent DIME mutational analysis,
transferase; HET: EPE; 1.96A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.4
Length = 182
Score = 138 bits (349), Expect = 4e-41
Identities = 42/201 (20%), Positives = 73/201 (36%), Gaps = 24/201 (11%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
+L+ ++ T+ G PV L C G P I W DG + +
Sbjct: 3 LKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQH----- 57
Query: 63 PLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP-FVRPMGN 121
G L +++V++ D G YWC + SQ V ++V G P F +
Sbjct: 58 ---------WIGFLSLKSVERS-DAGRYWCQVEDGGETEISQPVWLTVEGVPFFTVEPKD 107
Query: 122 VSAIAGEPLYLGCPVAGYPI-ESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGV 180
++ P L C G P +I W +G ++ ++ +
Sbjct: 108 LAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGP------APSPSVLNVTGVT-QSTM 160
Query: 181 YWCTATNKQGRSSSQNVHISV 201
+ C A N +G +SS+ + +
Sbjct: 161 FSCEAHNLKGLASSRTATVHL 181
Score = 104 bits (260), Expect = 8e-28
Identities = 32/145 (22%), Positives = 53/145 (36%), Gaps = 14/145 (9%)
Query: 115 FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVF-----PNGTLLI 169
+ ++ G+P+ L C V G I W K + + + G L +
Sbjct: 5 LMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSL 64
Query: 170 ENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPD---LHSGDRAGVQC 226
++V++ D G YWC + SQ V ++V P F +P + + C
Sbjct: 65 KSVERS-DAGRYWCQVEDGGETEISQPVWLTVEGVPF---FTVEPKDLAVPPNAPFQLSC 120
Query: 227 LVTKGDP-PLTISWLKNGLPILSAM 250
G P P+TI W + I
Sbjct: 121 EAV-GPPEPVTIVWWRGTTKIGGPA 144
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein,
serine/threonine-protein KI LIMB-girdle muscular
dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB:
2j8o_A 2ill_A
Length = 197
Score = 138 bits (349), Expect = 7e-41
Identities = 53/212 (25%), Positives = 78/212 (36%), Gaps = 32/212 (15%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
P + ++ +L C TG+P P + W G + D
Sbjct: 5 PHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIAD---------------- 48
Query: 63 PLNRRQKVFPNG--TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP------ 114
L R + F G L+I +V D D VY ATN+ G S + V
Sbjct: 49 GLKYRIQEFKGGYHQLIIASVTDD-DATVYQVRATNQGGSVSG-TASLEVEVPAKIHLPK 106
Query: 115 FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGT----LLIE 170
+ MG V A+ GE + + P +G P ITWQKG + N +V + +
Sbjct: 107 TLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPN 166
Query: 171 NVQKDHDRGVYWCTATNKQGRSSSQNVHISVT 202
V++ D G Y A N+ G V + V
Sbjct: 167 GVERK-DAGFYVVCAKNRFGIDQK-TVELDVA 196
Score = 100 bits (252), Expect = 2e-26
Identities = 37/145 (25%), Positives = 60/145 (41%), Gaps = 14/145 (9%)
Query: 113 AP-FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLN---RRQKVFPNG--T 166
AP F + N++ L C V G+P + W + +++ + R + F G
Sbjct: 4 APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQ 63
Query: 167 LLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHS-----GDR 221
L+I +V D D VY ATN+ G S + V VP KI + + + G+
Sbjct: 64 LIIASVTDD-DATVYQVRATNQGGSVSG-TASLEVEVPAKIHLPKTLEGMGAVHALRGEV 121
Query: 222 AGVQCLVTKGDPPLTISWLKNGLPI 246
++ + G P I+W K I
Sbjct: 122 VSIKIPFS-GKPDPVITWQKGQDLI 145
Score = 33.5 bits (77), Expect = 0.033
Identities = 11/50 (22%), Positives = 21/50 (42%), Gaps = 7/50 (14%)
Query: 203 VPPKIAPFEFQP---DLHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSA 249
+ P F+ + ++ A + C VT G P + W + G I++
Sbjct: 3 MAPH---FKEELRNLNVRYQSNATLVCKVT-GHPKPIVKWYRQGKEIIAD 48
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1,
isoform 2; hydrolase, immunoglobulin domain, nucleus,
protease; 2.80A {Homo sapiens}
Length = 218
Score = 135 bits (342), Expect = 1e-39
Identities = 39/221 (17%), Positives = 58/221 (26%), Gaps = 49/221 (22%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
++ + + G V L C ATG+P W +
Sbjct: 19 SKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGN--------------- 63
Query: 63 PLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP-------- 114
L+ V D G Y C N SQ + V P
Sbjct: 64 ----------TSELIFNAVHVK-DAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVD 112
Query: 115 --------FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGT 166
+ + G L L C G PI W K L +
Sbjct: 113 GVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETK------KL 166
Query: 167 LLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKI 207
++ V + +G YWC N + S+ V I + +
Sbjct: 167 YMVPYVDLE-HQGTYWCHVYNDRDSQDSKKVEIIIDELNNL 206
Score = 99.6 bits (248), Expect = 1e-25
Identities = 35/169 (20%), Positives = 51/169 (30%), Gaps = 26/169 (15%)
Query: 99 GRSSSQNVHISVT--GAP-FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPL 155
G S + H S + + +AG+ + L C G+P W K +++P
Sbjct: 2 GSSHHHHHHSSGLVPRGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPN 61
Query: 156 NRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPD 215
L+ V D G Y C N SQ + V P+
Sbjct: 62 GN------TSELIFNAVHVK-DAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGV 114
Query: 216 LHS---------------GDRAGVQCLVTKGDPPLTISWLKNGLPILSA 249
S G +QC+ G P W KN LP+
Sbjct: 115 SESKLQICVEPTSQKLMPGSTLVLQCVAV-GSPIPHYQWFKNELPLTHE 162
Score = 82.6 bits (204), Expect = 3e-19
Identities = 24/117 (20%), Positives = 39/117 (33%), Gaps = 26/117 (22%)
Query: 12 QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVF 71
Q L PG + L+C+A G+P PH W + PL +
Sbjct: 128 QKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHET------------------------ 163
Query: 72 PNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGNVSAIAGE 128
++ V + +G YWC N + S+ V I + + N +
Sbjct: 164 -KKLYMVPYVDLE-HQGTYWCHVYNDRDSQDSKKVEIIIDELNNLGHPDNKEQTTDQ 218
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain,
cytokine decoy RE virus/viral protein, type-1
interferon, soluble A/B-IFNR; HET: EPE; 2.10A
{Ectromelia virus}
Length = 329
Score = 136 bits (343), Expect = 1e-38
Identities = 47/251 (18%), Positives = 77/251 (30%), Gaps = 28/251 (11%)
Query: 12 QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVF 71
G P S KC + + + ++ + PLNRR
Sbjct: 39 DMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGK---------TRRPLNRRV--- 86
Query: 72 PNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMG-NVSAIAGEPL 130
NG L I N + Y CT T K G V + P P + +
Sbjct: 87 KNGDLWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRKPPSCIPETYELGTHDKYGI 146
Query: 131 YLGCPVA-GYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQ 189
L C + +ITW K Q+L ++ + L+I N + + D G Y C
Sbjct: 147 DLYCGILYAKHYNNITWYKNNQELIIDGTKYSQSGQNLIIHNPELE-DSGRYDCYVHYDD 205
Query: 190 GRSSSQNVHISVTVPPKIAPFEFQP---------DLHSGDRAGVQCLVT---KGDPPLTI 237
++ +S + P + ++ G+ A + C + I
Sbjct: 206 V-RIKNDIVVSRCKILTVIPSQDHRFKLILDPKINVTIGEPANITCTAVSTSLLVDDVLI 264
Query: 238 SWLKNGLPILS 248
W I+
Sbjct: 265 DWENPSGWIIG 275
Score = 124 bits (313), Expect = 3e-34
Identities = 40/173 (23%), Positives = 56/173 (32%), Gaps = 13/173 (7%)
Query: 86 DRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGNVSAIAGEPLYLGCPVAGYPIES-- 143
D NK + + + N A GEP CP + S
Sbjct: 3 DIENEITEFFNKMRDTLPAKDSKWLNPSCMFGGTMNDMAALGEPFSAKCPPIEDSLLSHR 62
Query: 144 -------ITWQK-GVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQ 195
+ W+K G + PLNRR NG L I N + Y CT T K G
Sbjct: 63 YNDKDNVVNWEKIGKTRRPLNRRV---KNGDLWIANYTSNDSHRRYLCTVTTKNGDCVQG 119
Query: 196 NVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISWLKNGLPILS 248
V + PP P ++ H + C + I+W KN ++
Sbjct: 120 IVRSHIRKPPSCIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELII 172
Score = 102 bits (255), Expect = 6e-26
Identities = 33/223 (14%), Positives = 63/223 (28%), Gaps = 45/223 (20%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKC-IATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQ 61
P I + + + L C I +I+W + Q+
Sbjct: 129 PSCIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNN-------------------QE 169
Query: 62 LPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQ---NVHISVT------G 112
L ++ + L+I N + + D G Y C R + + +T
Sbjct: 170 LIIDGTKYSQSGQNLIIHNPELE-DSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDH 228
Query: 113 APFVRPMGNVSAIAGEPLYLGCPVAGYPI----ESITWQKGVQQLPLNRRQKV------- 161
+ ++ GEP + C + I W+ +
Sbjct: 229 RFKLILDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSG 288
Query: 162 -FPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTV 203
TL ENV +++ Y C N + + +V +
Sbjct: 289 GITEATLYFENVTEEYIGNTYTCRGHNYYF---DKTLTTTVVL 328
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A
2f8v_A
Length = 194
Score = 131 bits (332), Expect = 2e-38
Identities = 46/201 (22%), Positives = 78/201 (38%), Gaps = 26/201 (12%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
P + G + + +G P P +SW DG ++
Sbjct: 6 PTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTS---------------- 49
Query: 63 PLNRRQKVFPNG--TLLIENVQKDHDRGVYWCTATNKQGRSSSQ-NVHISVTGAP--FVR 117
L Q F +G L I V K + G Y ATN G+++S + + AP FV+
Sbjct: 50 TLPGVQISFSDGRAKLTIPAVTKA-NSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQ 108
Query: 118 PMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNG---TLLIENVQK 174
+ +++ G + L V G P + + + ++ + ++ G +LLI
Sbjct: 109 RLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYP 168
Query: 175 DHDRGVYWCTATNKQGRSSSQ 195
+ D G Y ATN GR++S
Sbjct: 169 E-DSGTYSVNATNSVGRATST 188
Score = 94.8 bits (236), Expect = 4e-24
Identities = 38/147 (25%), Positives = 64/147 (43%), Gaps = 16/147 (10%)
Query: 113 AP-FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQK---VFPNG--T 166
AP F +P+ +V + G ++G+P+ ++W + Q + + F +G
Sbjct: 5 APTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAK 64
Query: 167 LLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHS-----GDR 221
L I V K + G Y ATN G+++S + V + AP F L S G +
Sbjct: 65 LTIPAVTKA-NSGRYSLKATNGSGQATST---AELLVKAETAPPNFVQRLQSMTVRQGSQ 120
Query: 222 AGVQCLVTKGDPPLTISWLKNGLPILS 248
+Q VT G P + + ++G I S
Sbjct: 121 VRLQVRVT-GIPTPVVKFYRDGAEIQS 146
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor,
tight junction formation, immunoglobulin superfamily,
immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1
b.1.1.4 PDB: 3eoy_G
Length = 209
Score = 132 bits (332), Expect = 3e-38
Identities = 42/206 (20%), Positives = 65/206 (31%), Gaps = 24/206 (11%)
Query: 11 QQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKV 70
+ + PV L C +G +P + WK D N +
Sbjct: 13 EVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITAS--------YEDRVT 64
Query: 71 FPNGTLLIENVQKDHDRGVYWCTATNKQGRS-SSQNVHISVTGAP-FVRPMGNVSAIAGE 128
F + ++V ++ D G Y C + + G S V + V P SA G
Sbjct: 65 FLPTGITFKSVTRE-DTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATIGN 123
Query: 129 PLYLGCPVA-GYPIESITWQKGVQQLPLNRRQ----------KVFPNGTLLIENVQKDHD 177
L C G P TW K +P N + G L+ + + D
Sbjct: 124 RAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSAS-D 182
Query: 178 RGVYWCTATNKQGRSSSQNVHISVTV 203
G Y C A N G + + + +
Sbjct: 183 TGEYSCEARNGYG-TPMTSNAVRMEA 207
Score = 114 bits (287), Expect = 2e-31
Identities = 31/151 (20%), Positives = 52/151 (34%), Gaps = 14/151 (9%)
Query: 111 TGAPFVR-PMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQK--------- 160
G+ V V P+ L C +G+ + W+
Sbjct: 2 MGSVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYED 61
Query: 161 --VFPNGTLLIENVQKDHDRGVYWCTATNKQGRS-SSQNVHISVTVPPKIAPFEFQPDLH 217
F + ++V ++ D G Y C + + G S V + V VPP
Sbjct: 62 RVTFLPTGITFKSVTRE-DTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSAT 120
Query: 218 SGDRAGVQCLVTKGDPPLTISWLKNGLPILS 248
G+RA + C G PP +W K+G+ + +
Sbjct: 121 IGNRAVLTCSEQDGSPPSEYTWFKDGIVMPT 151
>1f97_A Junction adhesion molecule; immunoglobulin superfamily,
beta-sandwich fold, cell adhesion; 2.50A {Mus musculus}
SCOP: b.1.1.1 b.1.1.4
Length = 212
Score = 131 bits (331), Expect = 5e-38
Identities = 36/208 (17%), Positives = 67/208 (32%), Gaps = 25/208 (12%)
Query: 12 QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVF 71
+ + L C +G +P + WK N + F
Sbjct: 11 VQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAP--------YADRVTF 62
Query: 72 PNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQ-NVHISVTGAP-FVRPMGNVSAIAGEP 129
+ + +V + D G Y C + + G++ + ++H++V P S G
Sbjct: 63 SSSGITFSSVTRK-DNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGNR 121
Query: 130 LYLGCPVA-GYPIESITWQKGVQQLPLNRRQKVFP-----------NGTLLIENVQKDHD 177
L C G P +W K + +K +G L+ + V D
Sbjct: 122 AVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAF-D 180
Query: 178 RGVYWCTATNKQGRSSSQNVHISVTVPP 205
G Y+C A N G ++ ++ +
Sbjct: 181 SGEYYCQAQNGYG-TAMRSEAAHMDAVE 207
Score = 116 bits (292), Expect = 3e-32
Identities = 32/148 (21%), Positives = 59/148 (39%), Gaps = 13/148 (8%)
Query: 114 PFVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKG-----------VQQLPLNRRQKVF 162
+V E + L C +G+ + W+ Q + F
Sbjct: 3 SVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTF 62
Query: 163 PNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQ-NVHISVTVPPKIAPFEFQPDLHSGDR 221
+ + +V + D G Y C + + G++ + ++H++V VPP + G+R
Sbjct: 63 SSSGITFSSVTRK-DNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGNR 121
Query: 222 AGVQCLVTKGDPPLTISWLKNGLPILSA 249
A + C G PP SW K+G+ +L+A
Sbjct: 122 AVLTCSEHDGSPPSEYSWFKDGISMLTA 149
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex,
beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo
sapiens}
Length = 339
Score = 132 bits (334), Expect = 4e-37
Identities = 50/280 (17%), Positives = 85/280 (30%), Gaps = 47/280 (16%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKC-------IATGNPTPHISWKLDGYPLAGDRHENKNRIG 55
+ ++ G PV+L+C A+ +P +++W + E + R+
Sbjct: 19 RFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVP-GEEETRM- 76
Query: 56 EARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP- 114
+G L + ++ D G Y CT N ++ + V
Sbjct: 77 --------------WAQDGALWLLPALQE-DSGTYVCTTRNASY-CDKMSIELRVFENTD 120
Query: 115 --FVRPMGNVSAIAGEPLYLGCP-----VAGYPIESITWQKGVQQLPL--NRRQKVFPNG 165
L CP I W K L + V
Sbjct: 121 AFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRGTT 180
Query: 166 TLLIENVQKDHDRGVYWCTATNKQGR---SSSQNVHISVTVPPKIAPFEFQPDLHS---- 218
LL+ +V + D G Y C T + ++++ + + + L +
Sbjct: 181 HLLVHDVALE-DAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLKTISAS 239
Query: 219 -GDRAGVQCLV--TKGDPPLTISW-LKNGLPILSAMGVGR 254
G R + C V G P T+ W N I SA GR
Sbjct: 240 LGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGR 279
Score = 103 bits (257), Expect = 4e-26
Identities = 36/228 (15%), Positives = 63/228 (27%), Gaps = 54/228 (23%)
Query: 11 QQTLQPGPPVSLKC-----IATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLN 65
Q L L C I W D L D
Sbjct: 129 PQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDN-----------------E 171
Query: 66 RRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGR---SSSQNVHISVTGAP------FV 116
+ V LL+ +V + D G Y C T + ++++ + + +
Sbjct: 172 KFLSVRGTTHLLVHDVALE-DAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVII 230
Query: 117 RPMGNVSAIAGEPLYLGCPVA---GYPIESITWQKGVQQLP----------LNRRQKVFP 163
P+ +SA G L + C V G P+ ++ W RQ+
Sbjct: 231 SPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSE 290
Query: 164 NG------TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPP 205
N L+ + V ++ + C N + + +V
Sbjct: 291 NNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQT---LRTTVKEHH 335
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif,
immunoglobulin-like domain, growth facto factor
receptor, extracellular; 2.10A {Homo sapiens} PDB:
1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E
1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Length = 231
Score = 129 bits (326), Expect = 5e-37
Identities = 41/220 (18%), Positives = 71/220 (32%), Gaps = 39/220 (17%)
Query: 12 QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVF 71
+ V +C A GNP P + W +G + + +
Sbjct: 29 HAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHR---------------IGGYKVRN 73
Query: 72 PNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP------FVRPMGNVSAI 125
+ +L++E+V D+G Y C N+ G + H+ V N S +
Sbjct: 74 QHWSLIMESVVPS-DKGNYTCVVENEYGSINH-TYHLDVVERSRHRPILQAGLPANASTV 131
Query: 126 AGEPLYLGCPVAGYPIESITWQKGVQQLPL--------------NRRQKVFPNGTLLIEN 171
G + C V I W K V++ + L + N
Sbjct: 132 VGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFN 191
Query: 172 VQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFE 211
V + D G Y C +N G ++Q+ ++V + E
Sbjct: 192 VTEA-DAGEYICKVSNYIG-QANQSAWLTVLPKQQAPGRE 229
Score = 97.7 bits (243), Expect = 8e-25
Identities = 32/167 (19%), Positives = 57/167 (34%), Gaps = 13/167 (7%)
Query: 94 ATNKQGRSSSQNVHISVTGAPFVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQL 153
A + +S+ T + + A + CP G P+ ++ W K ++
Sbjct: 2 AEDFVSENSNNKRAPYWTNTEKMEKR-LHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEF 60
Query: 154 PLNRRQKVF----PNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAP 209
R + + +L++E+V D+G Y C N+ G + H+ V + P
Sbjct: 61 KQEHRIGGYKVRNQHWSLIMESVVPS-DKGNYTCVVENEYGSINH-TYHLDVVERSRHRP 118
Query: 210 FEFQPDLHS-----GDRAGVQCLVTKGDPPLTISWLKNGLPILSAMG 251
+ G C V D I W+K+ S G
Sbjct: 119 ILQAGLPANASTVVGGDVEFVCKVY-SDAQPHIQWIKHVEKNGSKYG 164
Score = 40.3 bits (94), Expect = 3e-04
Identities = 15/74 (20%), Positives = 26/74 (35%), Gaps = 11/74 (14%)
Query: 185 ATNKQGRSSSQNVHISVTVPPKIA-PFEFQPDLHS---GDRAGVQCLVTKGDPPLTISWL 240
A + +S+ P + + LH+ + +C G+P T+ WL
Sbjct: 2 AEDFVSENSN------NKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAG-GNPMPTMRWL 54
Query: 241 KNGLPILSAMGVGR 254
KNG +G
Sbjct: 55 KNGKEFKQEHRIGG 68
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein
complex, receptor tyrosine kinas binding, immunoglobulin
domain, kinase, membrane, nucleotid binding; HET: NAG;
2.10A {Homo sapiens}
Length = 241
Score = 129 bits (326), Expect = 6e-37
Identities = 51/238 (21%), Positives = 75/238 (31%), Gaps = 44/238 (18%)
Query: 12 QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVF 71
+ V +C A GNPTP ISW +G G+ + +
Sbjct: 25 LAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEH---------------RIGGIKLRH 69
Query: 72 PNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP------FVRPMGNVSAI 125
+L++E+V DRG Y C NK G + V N +A+
Sbjct: 70 QQWSLVMESVVPS-DRGNYTCVVENKFGSIRQ-TYTLDVLERSPHRPILQAGLPANQTAV 127
Query: 126 AGEPLYLGCPVAGYPIESITWQKG---------------VQQLPLNRRQKVFPNGTLLIE 170
G + C V I W K V L + V + L +
Sbjct: 128 LGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLA 187
Query: 171 NVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLV 228
NV + D G Y C ATN G + + +SV P + + + V
Sbjct: 188 NVSER-DGGEYLCRATNFIG-VAEKAFWLSVHGPRAAEE----ELVEADEAGSVHHHH 239
Score = 93.1 bits (231), Expect = 5e-23
Identities = 40/155 (25%), Positives = 55/155 (35%), Gaps = 17/155 (10%)
Query: 111 TGAP-FVRPM----GNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVF--- 162
TGAP + RP ++ A + CP AG P SI+W K ++ R
Sbjct: 9 TGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLR 68
Query: 163 -PNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHS--- 218
+L++E+V DRG Y C NK G + V P +
Sbjct: 69 HQQWSLVMESVVPS-DRGNYTCVVENKFGSIRQ-TYTLDVLERSPHRPILQAGLPANQTA 126
Query: 219 --GDRAGVQCLVTKGDPPLTISWLKNGLPILSAMG 251
G C V D I WLK+ S +G
Sbjct: 127 VLGSDVEFHCKVY-SDAQPHIQWLKHVEVNGSKVG 160
Score = 82.7 bits (204), Expect = 3e-19
Identities = 27/116 (23%), Positives = 36/116 (31%), Gaps = 6/116 (5%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
QT G V C + PHI W + G V L
Sbjct: 115 ILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPD----GTPYVTVL 170
Query: 63 PLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRP 118
+ V + L + NV + D G Y C ATN G + + +SV G
Sbjct: 171 KSWISESVEADVRLRLANVSER-DGGEYLCRATNFIG-VAEKAFWLSVHGPRAAEE 224
Score = 38.8 bits (90), Expect = 8e-04
Identities = 14/65 (21%), Positives = 23/65 (35%), Gaps = 4/65 (6%)
Query: 193 SSQNVHISVTVPPKIAPFEFQPDLHS---GDRAGVQCLVTKGDPPLTISWLKNGLPILSA 249
+ + + P P L + + +C G+P +ISWLKNG
Sbjct: 1 ADPDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAA-GNPTPSISWLKNGREFRGE 59
Query: 250 MGVGR 254
+G
Sbjct: 60 HRIGG 64
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion
comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Length = 201
Score = 126 bits (317), Expect = 5e-36
Identities = 45/205 (21%), Positives = 74/205 (36%), Gaps = 34/205 (16%)
Query: 11 QQTLQPGPPVSLKCIATGNPTP--HISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQ 68
+ ++ G + L C + W L+ +P+ RR
Sbjct: 17 EVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMD----------------KRRF 60
Query: 69 KVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP----------FVRP 118
NG L I NV+ D+G Y C ++ S + I + P V
Sbjct: 61 VSQTNGNLYIANVEAS-DKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQ 119
Query: 119 MGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDR 178
+V A+ G+ + L C G P+ I W+K ++ +P L I N+Q + D
Sbjct: 120 FKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEISTS-GAVLKIFNIQLE-DE 177
Query: 179 GVYWCTATNKQGRSSSQNVHISVTV 203
G+Y C A N +G+ + V
Sbjct: 178 GIYECEAENIRGKDKH---QARIYV 199
Score = 91.9 bits (228), Expect = 6e-23
Identities = 30/146 (20%), Positives = 49/146 (33%), Gaps = 16/146 (10%)
Query: 115 FVRPMGNVSAIAGEPLYLGCPVAGYPIE--SITWQKGVQQLPL---NRRQKVFPNGTLLI 169
V G+ + L C + + S W + + RR NG L I
Sbjct: 11 PPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNLYI 70
Query: 170 ENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHS---------GD 220
NV+ D+G Y C ++ S + I + P+ + D+ G
Sbjct: 71 ANVEAS-DKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQ 129
Query: 221 RAGVQCLVTKGDPPLTISWLKNGLPI 246
++C G+P I W K P+
Sbjct: 130 NVTLECFAL-GNPVPDIRWRKVLEPM 154
Score = 78.8 bits (194), Expect = 4e-18
Identities = 28/110 (25%), Positives = 40/110 (36%), Gaps = 22/110 (20%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
++ +F G V+L+C A GNP P I W+ P +
Sbjct: 114 ADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEP-------------------M 154
Query: 63 PLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTG 112
P L I N+Q + D G+Y C A N +G+ Q I V
Sbjct: 155 PSTAEISTS-GAVLKIFNIQLE-DEGIYECEAENIRGKDKHQ-ARIYVQA 201
Score = 34.1 bits (78), Expect = 0.025
Identities = 12/53 (22%), Positives = 18/53 (33%), Gaps = 5/53 (9%)
Query: 207 IAPFEFQP----DLHSGDRAGVQCLVTKGDP-PLTISWLKNGLPILSAMGVGR 254
+ PF + + G + C P L+ WL N P+ M R
Sbjct: 7 LDPFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRR 59
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane,
glycoprotein, signal, complex (immunoglobulin/receptor);
2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB:
1ira_Y* 4dep_B* 1g0y_R
Length = 315
Score = 128 bits (322), Expect = 1e-35
Identities = 41/252 (16%), Positives = 64/252 (25%), Gaps = 41/252 (16%)
Query: 16 PGPPVSLKCIATGNPTPH-ISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNG 74
C N I+W D E +RI
Sbjct: 19 ANEIDVRPCPLNPNEHKGTITWYKDDSKTPVST-EQASRI---------------HQHKE 62
Query: 75 TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP-----FVRPMGNVSAIAGEP 129
L + + D G Y+C N + + +
Sbjct: 63 KLWFVPAKVE-DSGHYYCVVRNSSY-CLRIKISAKFVENEPNLCYNAQAIFKQKLPVAGD 120
Query: 130 LYLGCP------VAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWC 183
L CP + + W K + L L+ L++ NV + RG Y C
Sbjct: 121 GGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEK-HRGNYTC 179
Query: 184 TATNKQG-RSSSQNVHISVTV--------PPKIAPFEFQPDLHSGDRAGVQCLVTKGDPP 234
A+ + I P ++P ++ G + + C VT G
Sbjct: 180 HASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVT-GQLS 238
Query: 235 LTISWLKNGLPI 246
W NG I
Sbjct: 239 DIAYWKWNGSVI 250
Score = 108 bits (270), Expect = 4e-28
Identities = 35/226 (15%), Positives = 59/226 (26%), Gaps = 54/226 (23%)
Query: 10 IQQTLQPGPPVSLKC------IATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLP 63
+Q L L C N P + W D PL
Sbjct: 111 FKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPL-------------------L 151
Query: 64 LNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQG---RSSSQNVHISVTGAP------ 114
L+ L++ NV + RG Y C A+ ++ +
Sbjct: 152 LDNIHFSGVKDRLIVMNVAEK-HRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPV 210
Query: 115 FVRPMGN-VSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNG-------- 165
V P + G + L C V G + W+ + +
Sbjct: 211 IVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANK 270
Query: 166 -------TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVP 204
L I ++ + + C A N G ++ +I + P
Sbjct: 271 RRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAA---YIQLIYP 313
Score = 82.5 bits (203), Expect = 1e-18
Identities = 23/138 (16%), Positives = 43/138 (31%), Gaps = 15/138 (10%)
Query: 122 VSAIAGEPLYLGCPVAGYPIE-SITWQKGVQQLPLNRRQKV---FPNGTLLIENVQKDHD 177
+ + A E CP+ + +ITW K + P++ Q L + + D
Sbjct: 15 LVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVE-D 73
Query: 178 RGVYWCTATNKQGRSSSQNVHISVTVPPKIAPF----EFQPDLHSGDRAGVQCLVT---- 229
G Y+C N + + F+ L G+ C
Sbjct: 74 SGHYYCVVRNSSY-CLRIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFK 132
Query: 230 -KGDPPLTISWLKNGLPI 246
+ + + W K+ P+
Sbjct: 133 NENNELPKLQWYKDCKPL 150
Score = 75.1 bits (184), Expect = 5e-16
Identities = 18/102 (17%), Positives = 37/102 (36%), Gaps = 5/102 (4%)
Query: 3 PQLIYKFIQQ-TLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQ 61
P ++ + + G + L C TG + WK +G + E+ +GE
Sbjct: 209 PVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVI----DEDDPVLGEDYYSV 264
Query: 62 LPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSS 103
+++ L I ++ + + C A N G ++
Sbjct: 265 ENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAA 306
>2y25_A Myomesin; structural protein, sarcomere, M-BAND,
immunoglobulin-like D; 3.50A {Homo sapiens}
Length = 317
Score = 128 bits (322), Expect = 1e-35
Identities = 47/279 (16%), Positives = 81/279 (29%), Gaps = 59/279 (21%)
Query: 6 IYKFIQQTLQPGPPVSLKCIATG-NPTPHISWKLDGYPL-AGDRHENKNRIGEARVQQLP 63
+++ + V LKC HI W D + ++H+ K+
Sbjct: 10 FVEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDG---------- 59
Query: 64 LNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP-FVRPMGNV 122
TLLI K D G+Y + +G+ S+ + + + +
Sbjct: 60 ---------ICTLLITEFSKK-DAGIYEVILKDDRGKDKSR-LKLVDEAFKELMMEVCKK 108
Query: 123 SAIAGEPLYLGCPVAGYPIES----------ITWQKGVQQLPLNRRQKVFPNG---TLLI 169
A++ L + G + S + W + + R K G L I
Sbjct: 109 IALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQI 168
Query: 170 ENVQKDHDRGVYWCTATNKQGRSSS--------------------QNVHISVTVPPKIAP 209
+ D+G Y + + Q +
Sbjct: 169 NEPTPN-DKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGG 227
Query: 210 FEFQPDLHSGDRAGVQCLVTKGDPPLTISWLKNGLPILS 248
+ G + C V GDPP +SWLKN + S
Sbjct: 228 LPDVVTIQEGKALNLTCNVW-GDPPPEVSWLKNEKALAS 265
Score = 111 bits (280), Expect = 2e-29
Identities = 37/240 (15%), Positives = 66/240 (27%), Gaps = 56/240 (23%)
Query: 1 SHPQLIYKFIQQTLQPGPPVSLKCIATG----------NPTPHISWKLDGYPLAGDRHEN 50
+ +L+ + ++ + ++ A G ++W +G +
Sbjct: 97 AFKELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSD--- 153
Query: 51 KNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISV 110
RV+ L I + D+G Y + + V +S
Sbjct: 154 -------RVKTGVTGE------QIWLQINEPTPN-DKGKYVMELFDGKTGHQK-TVDLSG 198
Query: 111 TGAP----------------------FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQK 148
V+ G+ L L C V G P ++W K
Sbjct: 199 QAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLK 258
Query: 149 GVQQLPLNRRQKVF----PNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVP 204
+ L + + I V D G Y NK G +S +SV +P
Sbjct: 259 NEKALASDDHCNLKFEAGRTAYFTINGVSTA-DSGKYGLVVKNKYGSETSD-FTVSVFIP 316
Score = 96.1 bits (239), Expect = 1e-23
Identities = 30/153 (19%), Positives = 52/153 (33%), Gaps = 15/153 (9%)
Query: 108 ISVTGAP-FVRPMGNVSAIAGEPLYLGCPVAGY-PIESITWQKGVQQLPLNRRQKVFPNG 165
I P FV + + + L C VA I W K +++ ++ +
Sbjct: 2 IDPFTGPHFVEYL-SWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGI 60
Query: 166 -TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGV 224
TLLI K D G+Y + +G+ S+ + + ++ + S +
Sbjct: 61 CTLLITEFSKK-DAGIYEVILKDDRGKDKSR-LKLVDEAFKELMMEVCKKIALSATDLKI 118
Query: 225 QC---------LVTKGDPPLTISWLKNGLPILS 248
Q VT L ++W NG I
Sbjct: 119 QSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRY 151
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain,
immunoglobulin superfamily, transmembrane,
phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A
{Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Length = 389
Score = 127 bits (322), Expect = 6e-35
Identities = 59/255 (23%), Positives = 97/255 (38%), Gaps = 41/255 (16%)
Query: 6 IYKFIQQTLQPGPPVSLKCIATGNPTPHISWK--LDGYPLAGDRHENKNRIGEARVQQLP 63
I + +T V+L C A G P P I+WK +DG+ RI
Sbjct: 4 IIQLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRI--------- 54
Query: 64 LNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP-FVRPMGNV 122
+ + +L I++V+ D G Y C A ++ G +++++ + AP F+
Sbjct: 55 --EVKGQHGSSSLHIKDVKLS-DSGRYDCEAASRIG-GHQKSMYLDIEYAPKFISNQTIY 110
Query: 123 SAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVF-----PNGTLLIENVQKDHD 177
+ G P+ + C V P SI W++ LP + L I + D
Sbjct: 111 YSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDN-D 169
Query: 178 RGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTI 237
G Y CTATN G + Q +++ P +P+ + S A +
Sbjct: 170 FGRYNCTATNHIG-TRFQEYILALADVPS-SPYGVKIIELSQTTA-------------KV 214
Query: 238 SWLK----NGLPILS 248
S+ K G+PI
Sbjct: 215 SFNKPDSHGGVPIHH 229
Score = 104 bits (262), Expect = 2e-26
Identities = 30/143 (20%), Positives = 57/143 (39%), Gaps = 14/143 (9%)
Query: 114 PFVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVF----------P 163
++ N + + L C G PI ITW++ V K
Sbjct: 3 HIIQLK-NETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHG 61
Query: 164 NGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAG 223
+ +L I++V+ D G Y C A ++ G +++++ + PK + G+
Sbjct: 62 SSSLHIKDVKLS-DSGRYDCEAASRIG-GHQKSMYLDIEYAPKFISNQTIYYSWEGNPIN 119
Query: 224 VQCLVTKGDPPLTISWLKNGLPI 246
+ C V +PP +I W ++ L +
Sbjct: 120 ISCDVK-SNPPASIHWRRDKLVL 141
Score = 72.5 bits (178), Expect = 7e-15
Identities = 41/217 (18%), Positives = 70/217 (32%), Gaps = 40/217 (18%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
P+ I G P+++ C NP I W+ D L N
Sbjct: 101 PKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTG----- 155
Query: 63 PLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGNV 122
L I + D G Y CTATN G + Q +++ P V
Sbjct: 156 ---------RKMILEIAPTSDN-DFGRYNCTATNHIG-TRFQEYILALADVPS--SPYGV 202
Query: 123 SAIA----------GEPLYLG-CPVAGYPIESITWQKGVQQLPLNRRQKVFPNG---TLL 168
I +P G P+ Y ++ V+++ + V +G ++
Sbjct: 203 KIIELSQTTAKVSFNKPDSHGGVPIHHYQVD-------VKEVASEIWKIVRSHGVQTMVV 255
Query: 169 IENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPP 205
+ N++ + A N +G+ + I T+P
Sbjct: 256 LNNLEPNTT-YEIRVAAVNGKGQGDYSKIEIFQTLPV 291
Score = 28.6 bits (64), Expect = 2.2
Identities = 6/33 (18%), Positives = 11/33 (33%), Gaps = 1/33 (3%)
Query: 219 GDRAGVQCLVTKGDPPLTISWLKNGLPILSAMG 251
+ + C G+P I+W + G
Sbjct: 15 NGQVTLVCDAE-GEPIPEITWKRAVDGFTFTEG 46
>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus,
picornavirus, virus/receptor complex; 15.00A {Homo
sapiens} SCOP: i.6.1.1 PDB: 1dgi_R
Length = 302
Score = 125 bits (314), Expect = 1e-34
Identities = 44/252 (17%), Positives = 79/252 (31%), Gaps = 17/252 (6%)
Query: 11 QQTLQPGPPVSLKCIATGNPTP-----HISWKLDG--YPLAGDRHENKNRIGEARVQQLP 63
Q G V+L C ++W G +A E++ +
Sbjct: 9 QVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFV 68
Query: 64 LNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP-FVRPMGNV 122
R N +L + ++ + D G Y C S S ++ + V P + V
Sbjct: 69 AARLGAELRNASLRMFGLRVE-DEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKV 127
Query: 123 SAIAGEPLYLGCPVA-GYPIESITWQKGVQQLPLNRRQKVFPNGT-----LLIENVQKDH 176
C G P ITW + +P + F +GT L I
Sbjct: 128 QLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWILVPSSQV 187
Query: 177 DRGVYWCTATNKQGRSS-SQNVHISVTVPPKIAPFEFQPDLHS-GDRAGVQCLVTKGDPP 234
D C ++ V+++V PP+++ + + + + A + C P
Sbjct: 188 DGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNEATLTCDARSNPEP 247
Query: 235 LTISWLKNGLPI 246
+W P+
Sbjct: 248 TGYNWSTTMGPL 259
Score = 107 bits (267), Expect = 8e-28
Identities = 37/204 (18%), Positives = 56/204 (27%), Gaps = 24/204 (11%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIAT-GNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQ 61
PQ + + L P +C++T G P I+W D + G V
Sbjct: 118 PQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVT- 176
Query: 62 LPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSS-SQNVHISV--TGAPFVRP 118
+L I D C ++ V+++V +
Sbjct: 177 -------------SLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISG 223
Query: 119 MGNVSAIAGEPLYLGCPVAGYP-IESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHD 177
N + L C P W + LP V LLI V K
Sbjct: 224 YDNNWYLGQNEATLTCDARSNPEPTGYNWSTTMGPLP---PFAVAQGAQLLIRPVDKP-I 279
Query: 178 RGVYWCTATNKQGRSSSQNVHISV 201
C TN G + + + V
Sbjct: 280 NTTLICNVTNALG-ARQAELTVQV 302
Score = 100 bits (250), Expect = 3e-25
Identities = 26/162 (16%), Positives = 50/162 (30%), Gaps = 27/162 (16%)
Query: 114 PFVRPMGNVSAIAGEPLYLGCPVAGYP-----IESITWQK-------------------- 148
V+ V G+ + L C + + +TW +
Sbjct: 2 VVVQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSE 61
Query: 149 -GVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKI 207
+ R N +L + ++ + D G Y C S S ++ + V P+
Sbjct: 62 SKRLEFVAARLGAELRNASLRMFGLRVE-DEGNYTCLFVTFPQGSRSVDIWLRVLAKPQN 120
Query: 208 APFEFQPDLHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSA 249
+ L +C+ T G PP I+W + + +
Sbjct: 121 TAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNT 162
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Length = 305
Score = 124 bits (312), Expect = 3e-34
Identities = 53/212 (25%), Positives = 79/212 (37%), Gaps = 26/212 (12%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
P + ++ +L C TG+P P + W G + D K RI
Sbjct: 5 PHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIAD--GLKYRI-------- 54
Query: 63 PLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQ-----NVHISVTGAPFVR 117
++ L+I +V D D VY ATN+ G S V + +
Sbjct: 55 ----QEFKGGYHQLIIASVTDD-DATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLE 109
Query: 118 PMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNG----TLLIENVQ 173
MG V A+ GE + + P +G P ITWQKG + N +V + V+
Sbjct: 110 GMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVE 169
Query: 174 KDHDRGVYWCTATNKQGRSSSQNVHISVTVPP 205
+ D G Y A N+ G + V + V P
Sbjct: 170 RK-DAGFYVVCAKNRFG-IDQKTVELDVADVP 199
Score = 71.3 bits (175), Expect = 1e-14
Identities = 43/233 (18%), Positives = 73/233 (31%), Gaps = 51/233 (21%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
P+ + G VS+K +G P P I+W+ + + H
Sbjct: 105 PKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSF----- 159
Query: 63 PLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMG-N 121
+ V++ D G Y A N+ G + V + V P P G
Sbjct: 160 ----------TSLVFPNGVERK-DAGFYVVCAKNRFG-IDQKTVELDVADVPD-PPRGVK 206
Query: 122 VSAIAGEPLYL---------GCPVAGYPIE-----SITWQKGVQQLPLNRRQKVFPNGTL 167
VS ++ + + L G + Y +E + W + V Q
Sbjct: 207 VSDVSRDSVNLTWTEPASDGGSKITNYIVEKCATTAERWLR-VGQARET---------RY 256
Query: 168 LIENVQKDHD---RGVYWCTATNKQGRS-SSQNVHISVTVPPKIAPFEFQPDL 216
+ N+ R V A NK G S S+ ++T K + ++
Sbjct: 257 TVINLFGKTSYQFR-VI---AENKFGLSKPSEPSEPTITKEDKTRAMNYDEEV 305
Score = 32.4 bits (74), Expect = 0.11
Identities = 12/55 (21%), Positives = 21/55 (38%), Gaps = 7/55 (12%)
Query: 203 VPPKIAPFEFQPDLHS---GDRAGVQCLVTKGDPPLTISWLKNGLPILSAMGVGR 254
+ P F+ + + A + C VT G P + W + G I++ R
Sbjct: 3 MAPH---FKEELRNLNVRYQSNATLVCKVT-GHPKPIVKWYRQGKEIIADGLKYR 53
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin,
beta-sandwich, mceacam1A - immunoglobulin FO spike NTD -
galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus
musculus} PDB: 1l6z_A*
Length = 208
Score = 120 bits (302), Expect = 8e-34
Identities = 38/205 (18%), Positives = 68/205 (33%), Gaps = 13/205 (6%)
Query: 11 QQTLQPGPP-------VSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLP 63
+ T++ PP V L +W
Sbjct: 1 EVTIEAVPPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQA 60
Query: 64 LNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP--FVRPMGN 121
+ R+ ++ NG+LL + + D GVY T++ R + V V + N
Sbjct: 61 YSGREIIYSNGSLLFQMITMK-DMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTN 119
Query: 122 VSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNG-TLLIENVQKDHDRGV 180
+ + + L C +I W Q L L R + N L I+ ++++ D G
Sbjct: 120 TTVKELDSVTLTCLSNDIGA-NIQWLFNSQSLQLTERMTLSQNNSILRIDPIKRE-DAGE 177
Query: 181 YWCTATNKQGRSSSQNVHISVTVPP 205
Y C +N S ++ + + P
Sbjct: 178 YQCEISNPVSVRRSNSIKLDIIFDP 202
Score = 75.5 bits (185), Expect = 9e-17
Identities = 31/143 (21%), Positives = 50/143 (34%), Gaps = 7/143 (4%)
Query: 104 QNVHISVTGAPFVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFP 163
NV + V P +G + G + +A + S G + R+ ++
Sbjct: 15 NNVLLLVHNLPL--ALGAFAWYKGNTTAIDKEIARFVPNSNMNFTG---QAYSGREIIYS 69
Query: 164 NGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAG 223
NG+LL + + D GVY T++ R + V V P PF + +
Sbjct: 70 NGSLLFQMITMK-DMGVYTLDMTDENYRRTQATVRFHVHQPV-TQPFLQVTNTTVKELDS 127
Query: 224 VQCLVTKGDPPLTISWLKNGLPI 246
V D I WL N +
Sbjct: 128 VTLTCLSNDIGANIQWLFNSQSL 150
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell
adhesion, transmembrane, disulfide bond, alternative
splicing; HET: NAG; 1.95A {Rattus norvegicus}
Length = 190
Score = 119 bits (299), Expect = 2e-33
Identities = 46/212 (21%), Positives = 69/212 (32%), Gaps = 36/212 (16%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHIS--WKLDGYPLAGDRHENKNRIGEARVQ 60
P+++ PV+L+C T + + W +G L R
Sbjct: 4 PRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATR------------- 50
Query: 61 QLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP-FVRPM 119
K N I + + D G Y C + N I V AP
Sbjct: 51 --------KNASNMEYRINKPRAE-DSGEYHCVYHF--VSAPKANATIEVKAAPDITGHK 99
Query: 120 GNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLP-----LNRRQKVFPNGT---LLIEN 171
+ + G+ + C GYP W+K + + R + L I N
Sbjct: 100 RSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVN 159
Query: 172 VQKDHDRGVYWCTATNKQGRSSSQNVHISVTV 203
+Q D G Y C ATN G S+S + + V V
Sbjct: 160 LQITEDPGEYECNATNSIG-SASVSTVLRVRV 190
Score = 88.4 bits (219), Expect = 9e-22
Identities = 26/136 (19%), Positives = 41/136 (30%), Gaps = 8/136 (5%)
Query: 115 FVRPMGNVSAIAGEPLYLGCPVAGY--PIESITWQKGVQQLPLNRRQKVFPNGTLLIENV 172
V + + P+ L C + + W K +L R+ N I
Sbjct: 6 IVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRK--NASNMEYRINKP 63
Query: 173 QKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGD 232
+ + D G Y C + N I V P I + + + G A + C G
Sbjct: 64 RAE-DSGEYHCVYHF--VSAPKANATIEVKAAPDITGHKRSENKNEGQDAMMYCKSV-GY 119
Query: 233 PPLTISWLKNGLPILS 248
P W K +
Sbjct: 120 PHPEWMWRKKENGVFE 135
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 121 bits (304), Expect = 9e-33
Identities = 40/214 (18%), Positives = 68/214 (31%), Gaps = 34/214 (15%)
Query: 2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQ 61
P L + ++ G V L+C G W L ++Q
Sbjct: 158 VPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTE------------------LEQ 199
Query: 62 LPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGN 121
+ P+ L + NV D +R C A N GR+ +V ++V+ F +
Sbjct: 200 SATVMKSGGLPSLGLTLANVTSDLNRKNVTCWAENDVGRAEV-SVQVNVS---FPASVQL 255
Query: 122 VSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNR----------RQKVFPNGTLLIEN 171
+A+ + V G P S+ W L + +G L +
Sbjct: 256 HTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQ 315
Query: 172 VQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPP 205
+ G Y A N G +S ++ + P
Sbjct: 316 PTHV-NNGNYTLLAANPFG-QASASIMAAFMDNP 347
Score = 82.9 bits (204), Expect = 1e-18
Identities = 34/168 (20%), Positives = 54/168 (32%), Gaps = 7/168 (4%)
Query: 80 NVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGNVSAIAGEPLYLGCPVAGY 139
+++ GV + + S + N S G+ + L C V G
Sbjct: 126 RWEEEGLGGVPEQKLQCHGQGPLAHMPNASCGVPTLKVQVPNASVDVGDDVLLRCQVEGR 185
Query: 140 PIESITWQK-GVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVH 198
+E W ++Q + P+ L + NV D +R C A N GR+
Sbjct: 186 GLEQAGWILTELEQSATVMKSGGLPSLGLTLANVTSDLNRKNVTCWAENDVGRAEV---- 241
Query: 199 ISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISWLKNGLPI 246
SV V + V G P ++ WL NG +
Sbjct: 242 -SVQVNVSFPASVQLHTAVEMHHWCIPFSVD-GQPAPSLRWLFNGSVL 287
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral
protein-immune system compl; HET: NAG SUC; 1.99A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B*
2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C*
3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A
3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Length = 184
Score = 116 bits (292), Expect = 1e-32
Identities = 34/195 (17%), Positives = 65/195 (33%), Gaps = 19/195 (9%)
Query: 15 QPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVF-PN 73
+ G V L C A+ + WK + G +++ +RR N
Sbjct: 8 KKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGN 67
Query: 74 GTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGNVSAIAGEPLYLG 133
L+I+N++ + D Y C +++ Q + +T + + G+ L L
Sbjct: 68 FPLIIKNLKIE-DSDTYICEVEDQKE--EVQLLVFGLTANS------DTHLLQGQSLTLT 118
Query: 134 CPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSS 193
S+ + R + + TL + ++ D G + CT Q
Sbjct: 119 LESPPGSSPSVQCRS-------PRGKNIQGGKTLSVSQLEL-QDSGTWTCTVLQNQK-KV 169
Query: 194 SQNVHISVTVPPKIA 208
+ I V K +
Sbjct: 170 EFKIDIVVLAFQKAS 184
Score = 72.3 bits (177), Expect = 9e-16
Identities = 18/142 (12%), Positives = 36/142 (25%), Gaps = 31/142 (21%)
Query: 122 VSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVF------------------- 162
V G+ + L C + W+ Q L +
Sbjct: 5 VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWD 64
Query: 163 -PNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDR 221
N L+I+N++ + D Y C +++ Q + +T L G
Sbjct: 65 QGNFPLIIKNLKIE-DSDTYICEVEDQKE--EVQLLVFGLTANSDTH-------LLQGQS 114
Query: 222 AGVQCLVTKGDPPLTISWLKNG 243
+ ++
Sbjct: 115 LTLTLESP-PGSSPSVQCRSPR 135
Score = 64.6 bits (157), Expect = 6e-13
Identities = 13/103 (12%), Positives = 26/103 (25%), Gaps = 28/103 (27%)
Query: 12 QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVF 71
L G ++L + +P + + + +
Sbjct: 107 THLLQGQSLTLTLESPPGSSPSVQCRSPR--------------------------GKNIQ 140
Query: 72 PNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP 114
TL + ++ D G + CT Q + I V
Sbjct: 141 GGKTLSVSQLEL-QDSGTWTCTVLQNQK-KVEFKIDIVVLAFQ 181
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-
like; 2.50A {Homo sapiens}
Length = 312
Score = 118 bits (298), Expect = 4e-32
Identities = 38/283 (13%), Positives = 75/283 (26%), Gaps = 62/283 (21%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
P + ++ +C P SW D
Sbjct: 4 PFTKEVVVNVDDDGVISLNFEC-DKMTPKSEFSWSKDY-------------------VST 43
Query: 63 PLNRRQKVFPNG---TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVH------------ 107
+ R +V G + +++ D D G+Y C T+ G +SS +
Sbjct: 44 EDSPRLEVESKGNKTKMTFKDLGMD-DLGIYSCDVTDTDGIASSYLIDEEELKRLLALSH 102
Query: 108 -ISVTGAPFVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNG- 165
P + G+ + + + +++ + K+ +
Sbjct: 103 EHKFPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRN 162
Query: 166 ----TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKI-------------- 207
+ +E +Q + D G Y + + + S V + V K+
Sbjct: 163 TGIIEMFMEKLQDE-DEGTYTFQLQDGKATNHST-VVLVGDVFKKLQKEAEFQRQEWIRK 220
Query: 208 APFEFQPDLHS----GDRAGVQCLVTKGDPPLTISWLKNGLPI 246
F L ++C V I W K+ I
Sbjct: 221 QGPHFVEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREI 263
Score = 97.4 bits (242), Expect = 4e-24
Identities = 28/213 (13%), Positives = 60/213 (28%), Gaps = 39/213 (18%)
Query: 11 QQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKV 70
+ L+ G + +++ + + + +
Sbjct: 117 VEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGII---------- 166
Query: 71 FPNGTLLIENVQKDHDRGVYWCTATNKQGRSSS------------------QNVHISVTG 112
+ +E +Q + D G Y + + + S Q
Sbjct: 167 ----EMFMEKLQDE-DEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQ 221
Query: 113 APFVRPMGNVSAIAGEPLYLGCPVAGYPIE-SITWQKGVQQLPLNRRQKVFPN-GTLLIE 170
P + + L C VA E I W K +++ ++ + TLLI
Sbjct: 222 GPHFVEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLIT 281
Query: 171 NVQKDHDRGVYWCTATNKQGRSSSQNVHISVTV 203
K D G+Y + +G+ S+ + +
Sbjct: 282 EFSKK-DAGIYEVILKDDRGKDKSR---LKLVD 310
Score = 58.8 bits (142), Expect = 3e-10
Identities = 20/112 (17%), Positives = 36/112 (32%), Gaps = 23/112 (20%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTP-HISWKLDGYPL-AGDRHENKNRIGEARVQ 60
+++ + V LKC HI W D + ++H+ K+
Sbjct: 222 GPHFVEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDG------- 274
Query: 61 QLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTG 112
TLLI K D G+Y + +G+ S+ + +
Sbjct: 275 ------------ICTLLITEFSKK-DAGIYEVILKDDRGKDKSR-LKLVDEA 312
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold,
transmembrane, MHC lipoprotein, polymorphism; 3.90A
{Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3
PDB: 1wip_A 1wiq_A 3t0e_E
Length = 363
Score = 114 bits (286), Expect = 4e-30
Identities = 34/233 (14%), Positives = 73/233 (31%), Gaps = 20/233 (8%)
Query: 15 QPGPPVSLKCIATGNPTPHISWKL-DGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPN 73
+ G V L C A+ + WK + + G++ + + R N
Sbjct: 7 KKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGN 66
Query: 74 GTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGNVSAIAGEPLYLG 133
L+I+N++ + D Y C +++ ++ + + G+ L L
Sbjct: 67 FPLIIKNLKIE-DSDTYICEVEDQKEEVQLLVFGLT------ANS--DTHLLQGQSLTLT 117
Query: 134 CPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSS 193
S+ + R + + TL + ++ D G + CT Q
Sbjct: 118 LESPPGSSPSVQCRS-------PRGKNIQGGKTLSVSQLELQ-DSGTWTCTVLQNQK-KV 168
Query: 194 SQNVHISVTVPPKIAPFEFQPDLHSGDRAG-VQCLVTKGDPPLTISWLKNGLP 245
+ I V K + ++ + + + + V K + W
Sbjct: 169 EFKIDIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERAS 221
Score = 93.3 bits (231), Expect = 3e-22
Identities = 34/264 (12%), Positives = 62/264 (23%), Gaps = 72/264 (27%)
Query: 11 QQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKV 70
L G ++L + +P + + + +
Sbjct: 105 DTHLLQGQSLTLTLESPPGSSPSVQCRSPR--------------------------GKNI 138
Query: 71 FPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGNVSAIAGEPL 130
TL + ++ D G + CT Q + I V F + V GE +
Sbjct: 139 QGGKTLSVSQLELQ-DSGTWTCTVLQNQK-KVEFKIDIVVLA--FQKASSIVYKKEGEQV 194
Query: 131 YLGCPV-----AGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDH--------- 176
P+ + WQ + N + ++ V +D
Sbjct: 195 EFSFPLAFTVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLP 254
Query: 177 -------------DRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAG 223
G K G+ Q V++ V +
Sbjct: 255 LHLTLPQALPQYAGSGNLTLALEAKTGK-LHQEVNLVVMRAT-------------QLQKN 300
Query: 224 VQCLVT-KGDPPLTISWLKNGLPI 246
+ C V P L +S
Sbjct: 301 LTCEVWGPTSPKLMLSLKLENKEA 324
Score = 71.4 bits (174), Expect = 2e-14
Identities = 26/208 (12%), Positives = 67/208 (32%), Gaps = 32/208 (15%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
++YK + ++ P++ + + W+ + + + E V+++
Sbjct: 183 SSIVYKKEGEQVEFSFPLAFTVEKLT-GSGELWWQAERASSSKSWITFDLKNKEVSVKRV 241
Query: 63 PLNRRQKVFPNGTL---LIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPM 119
+ + ++ L L + + + G K G+ Q V++ V
Sbjct: 242 TQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLH-QEVNLVVM-------- 292
Query: 120 GNVSAIAGEPLYLGCPVAGYPIESI--TWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHD 177
L C V G + + + ++ +++R+K V +
Sbjct: 293 ----RATQLQKNLTCEVWGPTSPKLMLSLKLENKEAKVSKREK--------AVWVLNP-E 339
Query: 178 RGVYWCTATNKQGRSSSQNVHISVTVPP 205
G++ C ++ N + V P
Sbjct: 340 AGMWQCLLSDSGQVLLESN----IKVLP 363
Score = 70.6 bits (172), Expect = 3e-14
Identities = 18/142 (12%), Positives = 36/142 (25%), Gaps = 31/142 (21%)
Query: 122 VSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVF------------------- 162
V G+ + L C + W+ Q L +
Sbjct: 4 VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWD 63
Query: 163 -PNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDR 221
N L+I+N++ + D Y C +++ Q + +T L G
Sbjct: 64 QGNFPLIIKNLKIE-DSDTYICEVEDQKE--EVQLLVFGLTANSDTH-------LLQGQS 113
Query: 222 AGVQCLVTKGDPPLTISWLKNG 243
+ ++
Sbjct: 114 LTLTLESP-PGSSPSVQCRSPR 134
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system;
HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Length = 262
Score = 111 bits (279), Expect = 7e-30
Identities = 33/243 (13%), Positives = 62/243 (25%), Gaps = 45/243 (18%)
Query: 12 QTLQPGPPVSLKCIATGNPTPH-ISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKV 70
++ V+L C P W L+G
Sbjct: 11 VSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTS------------------------ 46
Query: 71 FPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGNVSAIAGEPL 130
+ I + + D G Y C S + + + + + + GEPL
Sbjct: 47 --TPSYRITSASVN-DSGEYRCQRGL---SGRSDPIQLEIHRGWLLLQVSSRVFTEGEPL 100
Query: 131 YLGCPV-AGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQ 189
L C + ++ + + + N L I G Y C+ K
Sbjct: 101 ALRCHAWKDKLVYNVLYYRNGKAFKFFH-----WNSNLTILKTNIS-HNGTYHCSGMGKH 154
Query: 190 GRSSSQNVHISVTVPPKIAPFEFQPD--LHSGDRAGVQCLVT----KGDPPLTISWLKNG 243
+S + ++V L G+ + C + L S+
Sbjct: 155 R-YTSAGISVTVKELFPAPVLNASVTSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGS 213
Query: 244 LPI 246
+
Sbjct: 214 KTL 216
Score = 105 bits (263), Expect = 2e-27
Identities = 30/207 (14%), Positives = 61/207 (29%), Gaps = 31/207 (14%)
Query: 1 SHPQLIYKFIQQTLQPGPPVSLKCIATGN-PTPHISWKLDGYPLAGDRHENKNRIGEARV 59
L+ + + G P++L+C A + ++ + +G
Sbjct: 81 HRGWLLLQVSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFFH------------ 128
Query: 60 QQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTG---APFV 116
N L I G Y C+ K +S + ++V AP +
Sbjct: 129 ------------WNSNLTILKTNIS-HNGTYHCSGMGKHR-YTSAGISVTVKELFPAPVL 174
Query: 117 RPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDH 176
+ G + L C + + + I +++
Sbjct: 175 NASVTSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGRNTSSEYQILTARRE- 233
Query: 177 DRGVYWCTATNKQGRSSSQNVHISVTV 203
D G+YWC A + G ++ + + V
Sbjct: 234 DSGLYWCEAATEDGNVLKRSPELELQV 260
Score = 74.6 bits (183), Expect = 5e-16
Identities = 20/127 (15%), Positives = 36/127 (28%), Gaps = 13/127 (10%)
Query: 121 NVSAIAGEPLYLGCPVAGYP-IESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRG 179
VS E + L C V P S W + + I + + D G
Sbjct: 10 WVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTS-------TPSYRITSASVN-DSG 61
Query: 180 VYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISW 239
Y C S + + + + + G+ ++C K + +
Sbjct: 62 EYRCQRGL---SGRSDPIQLEIHRGWLLLQVSSRV-FTEGEPLALRCHAWKDKLVYNVLY 117
Query: 240 LKNGLPI 246
+NG
Sbjct: 118 YRNGKAF 124
Score = 29.5 bits (66), Expect = 0.87
Identities = 8/45 (17%), Positives = 15/45 (33%), Gaps = 7/45 (15%)
Query: 204 PPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISWLKNGLPILS 248
PP ++ F+ + + C V + W NG +
Sbjct: 8 PPWVSVFQ-------EETVTLHCEVLHLPGSSSTQWFLNGTATQT 45
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein
complex, growth factor-receptor complex, TRA hormone
complex; HET: NDG NAG; 2.30A {Homo sapiens}
Length = 289
Score = 111 bits (279), Expect = 2e-29
Identities = 28/242 (11%), Positives = 62/242 (25%), Gaps = 40/242 (16%)
Query: 11 QQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKV 70
+ L L C + + W+ + + ++
Sbjct: 9 ELVLNVSSTFVLTCSGSAP----VVWERMSQEPPQEMAKAQDGT---------------- 48
Query: 71 FPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVT----GAPFVR---PMGNVS 123
+ L + N+ D G Y+CT + +G + + + + F+ +
Sbjct: 49 -FSSVLTLTNLTGL-DTGEYFCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIF 106
Query: 124 AIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWC 183
+ + C V P +T + + P + Y C
Sbjct: 107 LTEITEITIPCRVTD-PQLVVTLHE-------KKGDVALPVPYDHQRGFSGIFEDRSYIC 158
Query: 184 TATNKQGRSSSQNVHISVTVPPKIAPFEFQPD--LHSGDRAGVQCLVTKGDPPLTISWLK 241
T S ++ I + G+ + C+V G+ + W
Sbjct: 159 KTTIGDREVDSDAYYVYRLQVSSINVSVNAVQTVVRQGENITLMCIVI-GNEVVNFEWTY 217
Query: 242 NG 243
Sbjct: 218 PR 219
Score = 88.6 bits (219), Expect = 6e-21
Identities = 27/202 (13%), Positives = 49/202 (24%), Gaps = 40/202 (19%)
Query: 13 TLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFP 72
L +++ C T P ++ G+ + ++R
Sbjct: 106 FLTEITEITIPCRVTD-PQLVVTLHEKK--------------GDVALPVPYDHQRGFSGI 150
Query: 73 NGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPM---GNVSAIAGEP 129
+ Y C T S ++ + GE
Sbjct: 151 F------------EDRSYICKTTIGDREVDSDAYYVYRLQVSSINVSVNAVQTVVRQGEN 198
Query: 130 LYLGCPVAGYPIESITWQKGVQQLPL--------NRRQKVFPNGTLLIENVQKDHDRGVY 181
+ L C V G + + W ++ L I + + D G Y
Sbjct: 199 ITLMCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAEL-EDSGTY 257
Query: 182 WCTATNKQGRSSSQNVHISVTV 203
C T I++TV
Sbjct: 258 TCNVTESVN-DHQDEKAINITV 278
Score = 80.5 bits (198), Expect = 4e-18
Identities = 25/139 (17%), Positives = 48/139 (34%), Gaps = 15/139 (10%)
Query: 118 PMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLP--LNRRQKVFPNGTLLIENVQKD 175
P + L C + + W++ Q+ P + + Q + L + N+
Sbjct: 6 PGPELVLNVSSTFVLTCSGSA----PVVWERMSQEPPQEMAKAQDGTFSSVLTLTNLTGL 61
Query: 176 HDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQP------DLHSGDRAGVQCLVT 229
D G Y+CT + +G + + + + VP F L + C VT
Sbjct: 62 -DTGEYFCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVT 120
Query: 230 KGDPPLTISWLKNGLPILS 248
DP L ++ + +
Sbjct: 121 --DPQLVVTLHEKKGDVAL 137
Score = 67.4 bits (164), Expect = 2e-13
Identities = 20/116 (17%), Positives = 36/116 (31%), Gaps = 13/116 (11%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
+ +Q ++ G ++L CI GN + W + R+ E L
Sbjct: 182 INVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPR--------KESGRLVEPVTDFL 233
Query: 63 PLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGR-SSSQNVHISVTGAPFVR 117
L I + + D G Y C T + ++I+V +
Sbjct: 234 LDMPYHI---RSILHIPSAEL-EDSGTYTCNVTESVNDHQDEKAINITVVESGHHH 285
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil,
immunoglobulin, immune system, extracellular; HET: NAG;
3.10A {Homo sapiens} PDB: 3o4o_B*
Length = 349
Score = 111 bits (279), Expect = 4e-29
Identities = 39/265 (14%), Positives = 67/265 (25%), Gaps = 50/265 (18%)
Query: 17 GPPVSLKCI-----------ATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLN 65
P +KC + + W + R+ E R+ +
Sbjct: 22 DEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLE-EPINFRLPENRISK---- 76
Query: 66 RRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVT-----GAPFVRPMG 120
L + D G Y C N S + V ++
Sbjct: 77 ------EKDVLWFRPTLLN-DTGNYTCMLRNTTY-CSKVAFPLEVVQKDSCFNSPMKLPV 128
Query: 121 NVSAIAGEPLYLGCP-----VAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKD 175
+ I + CP +ITW G ++ N + L
Sbjct: 129 HKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQ-NFNNVIPEGMNLSFLIALI- 186
Query: 176 HDRGVYWCTAT---NKQGRSSSQNVHISVTVPPKIAPFEF--------QPDLHSGDRAGV 224
+ G Y C T N + ++ + + V PK A + G+ +
Sbjct: 187 SNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLI 246
Query: 225 QCLVT---KGDPPLTISWLKNGLPI 246
C V D + W +G
Sbjct: 247 PCTVYFSFLMDSRNEVWWTIDGKKP 271
Score = 88.0 bits (217), Expect = 2e-20
Identities = 29/213 (13%), Positives = 54/213 (25%), Gaps = 51/213 (23%)
Query: 22 LKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENV 81
+ + P I+W + Y + N + L
Sbjct: 145 VDGYFPSSVKPTITWYMGCYKI--------------------QNFNNVIPEGMNLSFLIA 184
Query: 82 QKDHDRGVYWCTAT---NKQGRSSSQNVHISVTGAPFVRP---------MGNVSAIAGEP 129
+ G Y C T N + ++ + + V G+P GE
Sbjct: 185 LI-SNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEE 243
Query: 130 LYLGCPV----AGYPIESITWQKGVQQLPLNRRQKVFP-------------NGTLLIENV 172
L + C V + W ++ L I+ V
Sbjct: 244 LLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKV 303
Query: 173 QKDHDRGVYWCTATNKQGRSSSQNVHISVTVPP 205
+ + Y C A + +G ++ + VP
Sbjct: 304 TSEDLKRSYVCHARSAKG-EVAKAAKVKQKVPA 335
Score = 79.5 bits (195), Expect = 2e-17
Identities = 28/171 (16%), Positives = 42/171 (24%), Gaps = 33/171 (19%)
Query: 116 VRPMGNVSAIAGEPLYLGCP-----------VAGYPIESITWQK----GVQQLPLNRRQK 160
+ M + EP + CP A ++ W + P+N R
Sbjct: 11 LDTMRQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLP 70
Query: 161 ----VFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDL 216
L + D G Y C N V + V K + F L
Sbjct: 71 ENRISKEKDVLWFRPTLLN-DTGNYTCMLRNTTY---CSKVAFPLEVVQKDSCFNSPMKL 126
Query: 217 H------SGDRAGVQCLVT----KGDPPLTISWLKNGLPILSAMGVGRKGN 257
+ C TI+W I + V +G
Sbjct: 127 PVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNFNNVIPEGM 177
Score = 59.9 bits (144), Expect = 1e-10
Identities = 21/134 (15%), Positives = 42/134 (31%), Gaps = 17/134 (12%)
Query: 1 SHPQLIYKFIQQTL---QPGPPVSLKCIAT----GNPTPHISWKLDGYPLAGDRHENKNR 53
+ P +I+ + +PG + + C + + W +DG D
Sbjct: 222 AVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKP--DDITIDVT 279
Query: 54 IGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGA 113
I E+ + + L I+ V + + Y C A + +G ++ +
Sbjct: 280 INESISHSRTEDETR----TQILSIKKVTSEDLKRSYVCHARSAKG-EVAKAAKVKQKVP 334
Query: 114 PFVRPMGNVSAIAG 127
P V G
Sbjct: 335 A---PRYTVELACG 345
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell
adhesion molecule, immunoglobuline superfamily,
alternative splicing, cell adhesion; 2.19A {Mus
musculus} PDB: 3mj7_B* 2npl_X
Length = 214
Score = 108 bits (271), Expect = 4e-29
Identities = 37/204 (18%), Positives = 63/204 (30%), Gaps = 21/204 (10%)
Query: 17 GPPVSLKCIATGNPTP----HISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKV-- 70
G L C T +P I W + G+ + + +V
Sbjct: 15 GETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHF 74
Query: 71 ------FPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP-FVRPMGNVS 123
+ ++ + N+Q D G Y C G +++ ++V P R + S
Sbjct: 75 TSNDVKSGDASINVTNLQLS-DIGTYQCKVKKAPG-VANKKFLLTVLVKPSGTRCFVDGS 132
Query: 124 AIAGEPLYLGCPVA-GYPIESITWQKGVQQLPLN-RRQKVFPNGTLLIENVQKDHDRGVY 181
G L C G WQK + + + ++N + G Y
Sbjct: 133 EEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSPVISVKNASSE-YSGTY 191
Query: 182 WCTATNKQGRSSSQNVHISVTVPP 205
CT N+ G S + + V P
Sbjct: 192 SCTVQNRVG---SDQCMLRLDVVP 212
Score = 85.1 bits (210), Expect = 3e-20
Identities = 30/171 (17%), Positives = 48/171 (28%), Gaps = 38/171 (22%)
Query: 108 ISVTGAPFVRPMGNVSAIAGEPLYLGCPVAGYPIE----SITWQK--------------- 148
+S+T P + GE YL C P + I W
Sbjct: 1 LSITT-----PEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILY 55
Query: 149 ------GVQQLPLNRRQKVFP------NGTLLIENVQKDHDRGVYWCTATNKQGRSSSQN 196
L R + ++ + N+Q D G Y C G +++
Sbjct: 56 SGDKIYDNYYPDLKGRVHFTSNDVKSGDASINVTNLQLS-DIGTYQCKVKKAPG-VANKK 113
Query: 197 VHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISWLKNGLPIL 247
++V V P G+ ++C +G PL W K
Sbjct: 114 FLLTVLVKPSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQT 164
Score = 62.0 bits (150), Expect = 7e-12
Identities = 17/111 (15%), Positives = 30/111 (27%), Gaps = 21/111 (18%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIAT-GNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQ 61
P F+ + + G LKC G+ W+
Sbjct: 122 PSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMP--------------- 166
Query: 62 LPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTG 112
+ + ++N + G Y CT N+ G S + + V
Sbjct: 167 ---TPWLAEMTSPVISVKNASSE-YSGTYSCTVQNRVG-SDQCMLRLDVVP 212
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit;
immunoglobulin fold, glycoprotein, IGE-binding Pro
immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP:
b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A*
1j88_A* 1j89_A* 1j87_A*
Length = 176
Score = 106 bits (265), Expect = 1e-28
Identities = 37/198 (18%), Positives = 64/198 (32%), Gaps = 38/198 (19%)
Query: 12 QTLQPGPPVSLKCIATGNPTPH-ISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKV 70
+ G V+L C W +G
Sbjct: 14 NRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEET------------------------ 49
Query: 71 FPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGNVSAIAGEPL 130
N +L I N + + D G Y C + S+ V++ V + + G+PL
Sbjct: 50 --NSSLNIVNAKFE-DSGEYKCQHQQV---NESEPVYLEVFSDWLLLQASAEVVMEGQPL 103
Query: 131 YLGCPV-AGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQ 189
+L C + + + + K + L N + I N + D G Y+CT Q
Sbjct: 104 FLRCHGWRNWDVYKVIYYKDGEALKYWY-----ENHNISITNATVE-DSGTYYCTGKVWQ 157
Query: 190 GRSSSQNVHISVTVPPKI 207
S+ ++I+V P+
Sbjct: 158 LDYESEPLNITVIKAPRE 175
Score = 63.0 bits (153), Expect = 2e-12
Identities = 21/121 (17%), Positives = 41/121 (33%), Gaps = 13/121 (10%)
Query: 127 GEPLYLGCPVAG-YPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTA 185
GE + L C + + S W N +L I N + + D G Y C
Sbjct: 19 GENVTLTCNGNNFFEVSSTKWFHNGSLSEET-------NSSLNIVNAKFE-DSGEYKCQH 70
Query: 186 TNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISWLKNGLP 245
+ S+ V++ V + + + G ++C + + + K+G
Sbjct: 71 QQV---NESEPVYLEVFSDWLLLQASAEV-VMEGQPLFLRCHGWRNWDVYKVIYYKDGEA 126
Query: 246 I 246
+
Sbjct: 127 L 127
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody,
immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S
3cm9_S 3chn_J 3cm9_J
Length = 585
Score = 108 bits (271), Expect = 3e-27
Identities = 41/251 (16%), Positives = 77/251 (30%), Gaps = 28/251 (11%)
Query: 12 QTLQPGPPVSLKCIATGNPTPHISW--KLDGYPLAGDRHENKNRIGEARVQ----QLPLN 65
G V++ C + I + +G + L
Sbjct: 341 VKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEE 400
Query: 66 RRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGNVSAI 125
F T+++ + D G YWC ++ + + G P ++ GNV+A+
Sbjct: 401 PGNGTF---TVILNQLTSR-DAGFYWCLTNGDTLWRTTVEIK-IIEGEPNLKVPGNVTAV 455
Query: 126 AGEPLYLGCPVA----GYPIESITWQK-GVQQLPL-----NRRQKVFPNG----TLLIEN 171
GE L + C Y W G Q LP ++ +L +
Sbjct: 456 LGETLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNL 515
Query: 172 VQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKG 231
V + D G YWC + V+++V + D A + ++ G
Sbjct: 516 VTRA-DEGWYWCGVKQGHFYGETAAVYVAVEERKAAGSRDVSL--AKADAAPDEKVLDSG 572
Query: 232 DPPLTISWLKN 242
+ +++
Sbjct: 573 FREIENKAIQD 583
Score = 101 bits (252), Expect = 1e-24
Identities = 39/265 (14%), Positives = 74/265 (27%), Gaps = 29/265 (10%)
Query: 2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHIS--WKLDGYPLAGDRHENKNRIGEA-- 57
P L+ T+ G V++ C +K G +
Sbjct: 112 GPGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTG 171
Query: 58 RVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVR 117
R++ Q +F +++I ++ D G Y C A + S+ +N + V
Sbjct: 172 RIRLDIQGTGQLLF---SVVINQLRLS-DAGQYLCQAGDDSN-SNKKNADLQVLKPEPEL 226
Query: 118 PMGN----------VSAIAGEPLYLGCPVAGYPIESITWQK-GVQQLPLNRRQKVFPNG- 165
+ + C + + G + R + P
Sbjct: 227 VYEDLRGSVTFHCALGPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDK 286
Query: 166 ----TLLIENVQKDHDRGVYWCTATNKQGR---SSSQNVHISVTVPPKIAPFEFQPDLHS 218
+++I ++K+ D G Y C A + S Q + V I +
Sbjct: 287 DGSFSVVITGLRKE-DAGRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVA 345
Query: 219 GDRAGVQCLVTKGDPPLTISWLKNG 243
G V C + + W
Sbjct: 346 GSSVAVLCPYNRKESKSIKYWCLWE 370
Score = 98.5 bits (244), Expect = 1e-23
Identities = 36/271 (13%), Positives = 68/271 (25%), Gaps = 46/271 (16%)
Query: 15 QPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNG 74
+ C + + G R+ P ++ +
Sbjct: 244 EVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEG---------RILLNPQDKDG----SF 290
Query: 75 TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP----FVRPMGNVSAIAGEPL 130
+++I ++K+ D G Y C A + + R V +AG +
Sbjct: 291 SVVITGLRKE-DAGRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSV 349
Query: 131 YLGCPVAGYPIESITW-----------------QKGVQQLPLNRRQKVFPNG-----TLL 168
+ CP +SI + +G + R + T++
Sbjct: 350 AVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVI 409
Query: 169 IENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLV 228
+ + D G YWC ++ + I P G+ V C
Sbjct: 410 LNQLTSR-DAGFYWCLTNGDTLWRTTVEIKIIEGEPNL--KVPGNVTAVLGETLKVPCHF 466
Query: 229 T---KGDPPLTISWLKNGLPILSAMGVGRKG 256
W G L + G
Sbjct: 467 PCKFSSYEKYWCKWNNTGCQALPSQDEGPSK 497
Score = 84.3 bits (207), Expect = 9e-19
Identities = 38/274 (13%), Positives = 69/274 (25%), Gaps = 46/274 (16%)
Query: 15 QPGPPVSLKC---IATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVF 71
G VS+ C + N W G + R +
Sbjct: 13 VEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGY-----VSSKYAGRANLT 67
Query: 72 PNG-----TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGNVSAIA 126
+ I + +D D G Y C S G + +
Sbjct: 68 NFPENGTFVVNIAQLSQD-DSGRYKCGLGINSRGLSFDVSLEVSQGPGLLNDTKVYTVDL 126
Query: 127 GEPLYLGCPV-AGYPIESITWQKGVQQLPL-------------NRRQKVFPNG------T 166
G + + CP + + K + P+ R ++ G +
Sbjct: 127 GRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFS 186
Query: 167 LLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEF---------QPDLH 217
++I ++ D G Y C A + S+ +N + V P +E
Sbjct: 187 VVINQLRLS-DAGQYLCQAGDDSN-SNKKNADLQVLKPEPELVYEDLRGSVTFHCALGPE 244
Query: 218 SGDRAGVQCLVTKGDPPLTISWLKNGLPILSAMG 251
+ A C + + G + G
Sbjct: 245 VANVAKFLCRQS-SGENCDVVVNTLGKRAPAFEG 277
Score = 53.1 bits (126), Expect = 3e-08
Identities = 21/145 (14%), Positives = 39/145 (26%), Gaps = 24/145 (16%)
Query: 121 NVSAIAGEPLYLGC---PVAGYPIESITWQKGV--------------QQLPLNRRQKVFP 163
V+++ G + + C P + W + R +
Sbjct: 9 EVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTN 68
Query: 164 NG-----TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHS 218
+ I + +D D G Y C R S +V + V+ P + +
Sbjct: 69 FPENGTFVVNIAQLSQD-DSGRYKCGLGI-NSRGLSFDVSLEVSQGPGLLNDTKVYTVDL 126
Query: 219 GDRAGVQCLVTKGDPPLTISWLKNG 243
G + C + S K
Sbjct: 127 GRTVTINCPFKTENAQKRKSLYKQI 151
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A*
1qa9_A
Length = 182
Score = 102 bits (255), Expect = 4e-27
Identities = 32/193 (16%), Positives = 65/193 (33%), Gaps = 27/193 (13%)
Query: 17 GPPVSLKC--IATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNG 74
G ++L + I W+ + + + K+F NG
Sbjct: 14 GQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEK-------ETFKEKDTYKLFKNG 66
Query: 75 TLLIENVQKDHDRGVYWCTATNKQGRS-SSQNVHISVTGAPFVRPMGNVSAIAGEPLYLG 133
TL I++++ D D+ +Y + + +G++ + + + R + L
Sbjct: 67 TLKIKHLKTD-DQDIYKVSIYDTKGKNVLEKIFDLKI----QERVSKPKISWTCINTTLT 121
Query: 134 CPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSS 193
C V + + + L L++R ++ + CTA NK + S
Sbjct: 122 CEVMNGTDPELNLYQDGKHLKLSQR--------VITHKWTTS-LSAKFKCTAGNKVSKES 172
Query: 194 SQNVHISVTVPPK 206
S V+ P K
Sbjct: 173 S---VEPVSCPEK 182
Score = 85.7 bits (212), Expect = 9e-21
Identities = 24/147 (16%), Positives = 54/147 (36%), Gaps = 24/147 (16%)
Query: 116 VRPMGNVSAIAGEPLYLGCP--VAGYPIESITWQK------------GVQQLPLNRRQKV 161
+ G+ + L P I+ I W+K + K+
Sbjct: 3 ITNALETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKL 62
Query: 162 FPNGTLLIENVQKDHDRGVYWCTATNKQGRS-SSQNVHISVTVPPKIAPFEFQPDL-HSG 219
F NGTL I++++ D D+ +Y + + +G++ + + + +P + +
Sbjct: 63 FKNGTLKIKHLKTD-DQDIYKVSIYDTKGKNVLEKIFDLKIQERVS------KPKISWTC 115
Query: 220 DRAGVQCLVTKGDPPLTISWLKNGLPI 246
+ C V G P ++ ++G +
Sbjct: 116 INTTLTCEVMNGTDP-ELNLYQDGKHL 141
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region
plasiticity, cell adhesion; HET: PG6; 2.50A {Homo
sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A
Length = 331
Score = 105 bits (263), Expect = 6e-27
Identities = 33/202 (16%), Positives = 57/202 (28%), Gaps = 24/202 (11%)
Query: 12 QTLQPGPPVSLKCI-ATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKV 70
+ Q + C A G P +SW+ A + N V
Sbjct: 145 KKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQE--------------IRNPNGTV 190
Query: 71 FPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP--FVRPMGNVSAIAGE 128
+ ++ H + C +++ ++V P + +
Sbjct: 191 TVISRYRLVPSREAH-QQSLACIVNYHMD-RFKESLTLNVQYEPEVTIEGFDGNWYLQRM 248
Query: 129 PLYLGCPVAGYP-IESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATN 187
+ L C P W LP + N TL + G Y C ATN
Sbjct: 249 DVKLTCKADANPPATEYHWTTLNGSLP---KGVEAQNRTLFFKGPINYSLAGTYICEATN 305
Query: 188 KQGRSSSQNVHISVTVPPKIAP 209
G + S V +++T +
Sbjct: 306 PIG-TRSGQVEVNITEAAALEH 326
Score = 98.7 bits (245), Expect = 2e-24
Identities = 34/257 (13%), Positives = 74/257 (28%), Gaps = 26/257 (10%)
Query: 11 QQTLQPGPPVSLKCIATGNPTP----HISWKLDGYPLAGDRHENKNRIGEARVQQLPLNR 66
G V L C ++W+ + +G + P
Sbjct: 23 SMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSV--LAPYRE 80
Query: 67 RQKV----FPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFV------ 116
R + F +GT+ + ++ + D GVY C + ++++V P
Sbjct: 81 RVEFLRPSFTDGTIRLSRLELE-DEGVYICEFATFPTGNRESQLNLTVMAKPTNWIEGTQ 139
Query: 117 RPMGNVSAIAGEPLYLGCPVA-GYPIESITWQKGVQQLP-----LNRRQKVFPNGTLLIE 170
+ + L C A G P ++W+ ++ N V +
Sbjct: 140 AVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTVISRYRLV 199
Query: 171 NVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLH-SGDRAGVQCLVT 229
++ H + C +++ ++V P++ F + + + C
Sbjct: 200 PSREAH-QQSLACIVNYHMD-RFKESLTLNVQYEPEVTIEGFDGNWYLQRMDVKLTCKAD 257
Query: 230 KGDPPLTISWLKNGLPI 246
P W +
Sbjct: 258 ANPPATEYHWTTLNGSL 274
Score = 79.8 bits (196), Expect = 1e-17
Identities = 31/170 (18%), Positives = 53/170 (31%), Gaps = 31/170 (18%)
Query: 113 APFVRPMGNVSAIAGEPLYLGC----PVAGYPIESITWQKGVQQLPLN------------ 156
+ V+ ++ G + L C P+ I +TWQK N
Sbjct: 15 SQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSV 74
Query: 157 ---RRQKV------FPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKI 207
R++V F +GT+ + ++ + D GVY C + ++++V P
Sbjct: 75 LAPYRERVEFLRPSFTDGTIRLSRLELE-DEGVYICEFATFPTGNRESQLNLTVMAKPTN 133
Query: 208 APFEFQPDLH-----SGDRAGVQCLVTKGDPPLTISWLKNGLPILSAMGV 252
Q L C G PP +SW +
Sbjct: 134 WIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEI 183
Score = 59.4 bits (143), Expect = 2e-10
Identities = 22/109 (20%), Positives = 28/109 (25%), Gaps = 24/109 (22%)
Query: 11 QQTLQPGPPVSLKCIATGNPTPH-ISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQK 69
V L C A NP W L
Sbjct: 241 GNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKG----------------------V 278
Query: 70 VFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRP 118
N TL + G Y C ATN G + S V +++T A +
Sbjct: 279 EAQNRTLFFKGPINYSLAGTYICEATNPIG-TRSGQVEVNITEAAALEH 326
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor,
CD32, immunoglobulin superfamily, low responder
polymorphism, cell membrane; HET: NAG; 1.50A {Homo
sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C*
2fcb_A
Length = 170
Score = 101 bits (252), Expect = 1e-26
Identities = 34/192 (17%), Positives = 54/192 (28%), Gaps = 38/192 (19%)
Query: 12 QTLQPGPPVSLKCIATGNPTPH-ISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKV 70
+ V+L C +P I W +G +
Sbjct: 14 INVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTH------------------------ 49
Query: 71 FPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGNVSAIAGEPL 130
+D G Y C S VH++V V ++ GE +
Sbjct: 50 --TQPSYRFKANN-NDSGEYTCQTGQTSL---SDPVHLTVLFEWLVLQTPHLEFQEGETI 103
Query: 131 YLGCPV-AGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQ 189
L C P+ +T+ + + + + T I H G Y CT
Sbjct: 104 MLRCHSWKDKPLVKVTFFQNGKSQKFSHL-----DPTFSIPQANHSH-SGDYHCTGNIGY 157
Query: 190 GRSSSQNVHISV 201
SS+ V I+V
Sbjct: 158 TLFSSKPVTITV 169
Score = 69.8 bits (171), Expect = 4e-15
Identities = 22/129 (17%), Positives = 42/129 (32%), Gaps = 13/129 (10%)
Query: 121 NVSAIAGEPLYLGCPVAGYP-IESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRG 179
++ + + + L C A P +SI W +P + +D G
Sbjct: 13 WINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTH-------TQPSYRFKANN-NDSG 64
Query: 180 VYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISW 239
Y C S VH++V + G+ ++C K P + +++
Sbjct: 65 EYTCQTGQTSL---SDPVHLTVLFEWLVLQTPHLE-FQEGETIMLRCHSWKDKPLVKVTF 120
Query: 240 LKNGLPILS 248
+NG
Sbjct: 121 FQNGKSQKF 129
Score = 54.8 bits (132), Expect = 2e-09
Identities = 17/101 (16%), Positives = 28/101 (27%), Gaps = 26/101 (25%)
Query: 11 QQTLQPGPPVSLKCIATGNPTPH-ISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQK 69
Q G + L+C + + +++ +G
Sbjct: 94 HLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKFSH---------------------- 131
Query: 70 VFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISV 110
+ T I H G Y CT SS+ V I+V
Sbjct: 132 --LDPTFSIPQANHSH-SGDYHCTGNIGYTLFSSKPVTITV 169
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer,
immunoglobul domain, muscle protein, thick filament,
contractIle protein; 2.24A {Homo sapiens}
Length = 212
Score = 101 bits (254), Expect = 1e-26
Identities = 34/224 (15%), Positives = 58/224 (25%), Gaps = 56/224 (25%)
Query: 17 GPPVSLKC----------IATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNR 66
+ ++ + ++W +G + RV+
Sbjct: 8 ATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSD----------RVKTGVTGE 57
Query: 67 RQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP------------ 114
+ L I + D+G Y + + V +S
Sbjct: 58 QI------WLQINEPTPN-DKGKYVMELFDGKTGHQK-TVDLSGQAYDEAYAEFQRLKQA 109
Query: 115 ----------FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFP- 163
V+ G+ L L C V G P ++W K + L +
Sbjct: 110 AIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFE 169
Query: 164 ---NGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVP 204
I V D G Y NK G +S +SV +P
Sbjct: 170 AGRTAYFTINGVSTA-DSGKYGLVVKNKYGSETSD-FTVSVFIP 211
Score = 76.8 bits (189), Expect = 4e-17
Identities = 30/161 (18%), Positives = 49/161 (30%), Gaps = 37/161 (22%)
Query: 120 GNVSAIAGEPLYLGCPVAGYPIES----------ITWQKGVQQLPLNRRQKVFPNG---T 166
G+ A++ L + G + S + W + + R K G
Sbjct: 1 GSSIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIW 60
Query: 167 LLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAP----------------- 209
L I + D+G Y + + V +S +
Sbjct: 61 LQINEPTPN-DKGKYVMELFDGKTGHQK-TVDLSGQAYDEAYAEFQRLKQAAIAEKNRAR 118
Query: 210 -FEFQPDLHS---GDRAGVQCLVTKGDPPLTISWLKNGLPI 246
PD+ + G + C V GDPP +SWLKN +
Sbjct: 119 VLGGLPDVVTIQEGKALNLTCNVW-GDPPPEVSWLKNEKAL 158
Score = 71.8 bits (176), Expect = 2e-15
Identities = 26/108 (24%), Positives = 36/108 (33%), Gaps = 17/108 (15%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
L T+Q G ++L C G+P P +SW + LA H
Sbjct: 118 RVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDH-------------- 163
Query: 63 PLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISV 110
N + + I V D G Y NK G +S +SV
Sbjct: 164 -CNLKFEAGRTAYFTINGVSTA-DSGKYGLVVKNKYGSETSD-FTVSV 208
Score = 37.9 bits (88), Expect = 0.001
Identities = 7/30 (23%), Positives = 11/30 (36%)
Query: 219 GDRAGVQCLVTKGDPPLTISWLKNGLPILS 248
+ + VT L ++W NG I
Sbjct: 17 AEGIQLYSFVTYYVEDLKVNWSHNGSAIRY 46
>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin
domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr
virus}
Length = 201
Score = 101 bits (253), Expect = 1e-26
Identities = 35/206 (16%), Positives = 59/206 (28%), Gaps = 23/206 (11%)
Query: 13 TLQPGPPVSLKCIA---TGNPTPHISWKLDGYP----LAGDRHENKNRIGEARVQQLPLN 65
T G V+L + P +SW G L G H + I ++
Sbjct: 2 TAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIH 61
Query: 66 RRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP-FVRPMGNVSA 124
R L++ G Y C + + Q H+SV
Sbjct: 62 RSAN---TFFLVVTAANIS-HDGNYLCRMKLGETEVTKQ-EHLSVVKPLTLSVHSERSQF 116
Query: 125 IAGEPLYLGCPVAGYPIESITWQKGVQQLPL----NRRQKVFPNGTLLI---ENVQKDHD 177
L + C V +P + W P N +G+L + ++ K
Sbjct: 117 PDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKP-W 175
Query: 178 RGVYWCTATNKQGRSSSQNVHISVTV 203
C N + + V++S +
Sbjct: 176 HLPVTCVGKNDKE--EAHGVYVSGYL 199
Score = 71.6 bits (175), Expect = 2e-15
Identities = 27/157 (17%), Positives = 45/157 (28%), Gaps = 27/157 (17%)
Query: 122 VSAIAGEPLYLGCP---VAGYPIESITWQKG-----------------VQQLPLNRRQKV 161
V+A GE + L V+ P ++W K + P +
Sbjct: 1 VTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDI 60
Query: 162 FPNG---TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHS 218
+ L++ G Y C + + Q H+SV P ++ +
Sbjct: 61 HRSANTFFLVVTAANIS-HDGNYLCRMKLGETEVTKQ-EHLSVVKPLTLSVHSERSQFPD 118
Query: 219 GDRAGVQCLVTKGDPPLTISWL-KNGLPILSAMGVGR 254
V C V P + WL G+ G
Sbjct: 119 FSVLTVTCTVN-AFPHPHVQWLMPEGVEPAPTAANGG 154
Score = 67.0 bits (163), Expect = 9e-14
Identities = 14/111 (12%), Positives = 29/111 (26%), Gaps = 21/111 (18%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
L + +++ C P PH+ W + N
Sbjct: 105 LTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANG----------- 153
Query: 63 PLNRRQKVFPNGTLLI---ENVQKDHDRGVYWCTATNKQGRSSSQNVHISV 110
+G+L + ++ K C N + + V++S
Sbjct: 154 ----GVMKEKDGSLSVAVDLSLPKP-WHLPVTCVGKNDKE--EAHGVYVSG 197
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin
superfamily, integrin-binding, cell adhesion protein;
1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A
1vsc_A
Length = 202
Score = 100 bits (250), Expect = 4e-26
Identities = 41/214 (19%), Positives = 66/214 (30%), Gaps = 39/214 (18%)
Query: 11 QQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKV 70
+ Q G VSL C TG +P SW+ PLN +
Sbjct: 10 RYLAQIGDSVSLTCSTTGCESPFFSWRTQI--------------------DSPLNGKVTN 49
Query: 71 FPN-GTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP-FVRPMGNVSAIAGE 128
TL + V ++ Y CTAT + + + + + + P + AG+
Sbjct: 50 EGTTSTLTMNPVSFGNE-HSYLCTATCESRK-LEKGIQVEIYSFPKDPEIHLSGPLEAGK 107
Query: 129 PLYLGCPVAG-YPIE--SITWQKGVQQLPLNRRQKVFPNGTL------LIENVQKDHDRG 179
P+ + C VA YP + I KG + + +L + +
Sbjct: 108 PITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGK 167
Query: 180 VYWCTATNKQG------RSSSQNVHISVTVPPKI 207
V C A + V + PK
Sbjct: 168 VLVCRAKLHIDEMDSVPTVRQAVKELQVYISPKN 201
Score = 86.0 bits (212), Expect = 1e-20
Identities = 28/135 (20%), Positives = 46/135 (34%), Gaps = 4/135 (2%)
Query: 116 VRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKD 175
P A G+ + L C G +W+ + + TL + V
Sbjct: 5 TTPESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFG 64
Query: 176 HDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPP- 234
++ Y CTAT + + + + + + PK L +G V+C V P
Sbjct: 65 NE-HSYLCTATCESRK-LEKGIQVEIYSFPKDPEIHLSGPLEAGKPITVKCSVADVYPFD 122
Query: 235 -LTISWLKNGLPILS 248
L I LK + S
Sbjct: 123 RLEIDLLKGDHLMKS 137
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion;
2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 184
Score = 99.7 bits (248), Expect = 4e-26
Identities = 38/207 (18%), Positives = 55/207 (26%), Gaps = 44/207 (21%)
Query: 10 IQQTLQPGPPVSLKCIATGNPTPHIS--WKLDGYPLAGDRHENKNRIGEARVQQLPLNRR 67
G + L C + T W G L D
Sbjct: 6 FTTVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDA-------------------- 45
Query: 68 QKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPM-GNVSAIA 126
P + D G Y C +I + G P V+ + +
Sbjct: 46 ---LPGQKTEFKVDSDD-QWGEYSCVFLP----EPMGTANIQLHGPPRVKAVKSSEHINE 97
Query: 127 GEPLYLGCPVAGYP-IESITWQKGVQQLP------LNRRQKVFPNG---TLLIENVQKDH 176
GE L C P + W K R V + L IEN+ +
Sbjct: 98 GETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEA 157
Query: 177 DRGVYWCTATNKQGRSSSQNVHISVTV 203
D G Y C T+ +G + I++ V
Sbjct: 158 DPGQYRCNGTSSKGSDQA---IITLRV 181
Score = 72.4 bits (177), Expect = 9e-16
Identities = 23/141 (16%), Positives = 41/141 (29%), Gaps = 11/141 (7%)
Query: 118 PMGNVSAIAGEPLYLGCPVAGY--PIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKD 175
+ G + L C + + W KG L + P + D
Sbjct: 4 TVFTTVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDA----LPGQKTEFKVDSDD 59
Query: 176 HDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPL 235
G Y C +I + PP++ + ++ G+ A + C P
Sbjct: 60 -QWGEYSCVFLP----EPMGTANIQLHGPPRVKAVKSSEHINEGETAMLVCKSESVPPVT 114
Query: 236 TISWLKNGLPILSAMGVGRKG 256
+W K A+ G +
Sbjct: 115 DWAWYKITDSEDKALMNGSES 135
Score = 63.5 bits (154), Expect = 1e-12
Identities = 22/112 (19%), Positives = 36/112 (32%), Gaps = 18/112 (16%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNP-TPHISWKLDGYPLAGDRHENKNRIGEARVQQ 61
P++ + + G L C + P +W K E +
Sbjct: 84 PRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWY-------------KITDSEDKALM 130
Query: 62 LPLNRRQKVFPNG---TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISV 110
R V + L IEN+ + D G Y C T+ +G S + + V
Sbjct: 131 NGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKG-SDQAIITLRV 181
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3;
immunoglobulin, VCBP, V-type, V SET, immune system;
1.85A {Branchiostoma floridae}
Length = 250
Score = 101 bits (252), Expect = 5e-26
Identities = 44/242 (18%), Positives = 66/242 (27%), Gaps = 54/242 (22%)
Query: 11 QQTLQPGPPVSLKC---IATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRR 67
+ + G V L C +A P ISW P + N + +
Sbjct: 11 EVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDS 70
Query: 68 QKVFP-------------NGTLLIENVQKDHDRGVYWCTATNKQGRS----SSQNVHISV 110
K TL + +V D G YWC R+ +++V + V
Sbjct: 71 YKESFGDFLGRASVANLAAPTLRLTHVHPQ-DGGRYWCQVAQWSIRTEFGLDAKSVVLKV 129
Query: 111 TGAP-----FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLP----------- 154
TG V V G + + CP ++TW G
Sbjct: 130 TGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLA 189
Query: 155 -------------LNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISV 201
+ R L+I + D G WC QG + S
Sbjct: 190 NKNQFGITWFSSEIAGRASFSGARNLVIRAAKIT-DAGRVWCELATGQG---ELDADRSS 245
Query: 202 TV 203
T+
Sbjct: 246 TI 247
Score = 71.5 bits (174), Expect = 6e-15
Identities = 14/115 (12%), Positives = 31/115 (26%), Gaps = 7/115 (6%)
Query: 1 SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQ 60
S+ + + G +++ C T +++W +
Sbjct: 135 SNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQF 194
Query: 61 QLP-----LNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISV 110
+ + R L+I + D G WC QG + ++
Sbjct: 195 GITWFSSEIAGRASFSGARNLVIRAAKIT-DAGRVWCELATGQG-ELDADRSSTI 247
Score = 59.2 bits (142), Expect = 1e-10
Identities = 25/172 (14%), Positives = 39/172 (22%), Gaps = 45/172 (26%)
Query: 118 PMGNVSAIAGEPLYLGCPV---AGYPIESITWQKGVQQLPLNRRQKVF------------ 162
V AG + L C I+W KG + K
Sbjct: 8 THTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVE 67
Query: 163 --------------------PNGTLLIENVQKDHDRGVYWCTATNKQGR------SSSQN 196
TL + +V D G YWC R + S
Sbjct: 68 SDSYKESFGDFLGRASVANLAAPTLRLTHVHPQ-DGGRYWCQVAQWSIRTEFGLDAKSVV 126
Query: 197 VHISVTVPPKIAPFEFQPDLH--SGDRAGVQCLVTKGDPPLTISWLKNGLPI 246
+ ++ P + G+ + C T ++W
Sbjct: 127 LKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCT-DCANANVTWYTGPTFF 177
Score = 29.1 bits (64), Expect = 1.3
Identities = 11/50 (22%), Positives = 17/50 (34%), Gaps = 8/50 (16%)
Query: 199 ISVTVPPKIAPFEFQPDLHSGDRAGVQCLVT--KGDPPLTISWLKNGLPI 246
++V ++H+G + C P ISWLK P
Sbjct: 3 MTVRTTHTEV------EVHAGGTVELPCSYQLANDTQPPVISWLKGASPD 46
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A
{Homo sapiens}
Length = 207
Score = 96.5 bits (240), Expect = 1e-24
Identities = 30/212 (14%), Positives = 64/212 (30%), Gaps = 39/212 (18%)
Query: 11 QQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKV 70
+ L+ G + +++ + + + +
Sbjct: 12 VEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGII---------- 61
Query: 71 FPNGTLLIENVQKDHDRGVYWCTATNKQGRSSS------------------QNVHISVTG 112
+ +E +Q + D G Y + + + S Q
Sbjct: 62 ----EMFMEKLQDE-DEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQ 116
Query: 113 AP-FVRPMGNVSAIAGEPLYLGCPVAGYPIES-ITWQKGVQQLPLNRRQKVFP-NGTLLI 169
P FV + + + L C VA E+ I W K +++ ++ + TLLI
Sbjct: 117 GPHFVEYL-SWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLI 175
Query: 170 ENVQKDHDRGVYWCTATNKQGRSSSQNVHISV 201
K D G+Y + +G+ S+ + +
Sbjct: 176 TEFSKK-DAGIYEVILKDDRGKDKSR-LKLVD 205
Score = 77.7 bits (191), Expect = 2e-17
Identities = 20/157 (12%), Positives = 43/157 (27%), Gaps = 24/157 (15%)
Query: 113 APFVRPMGNVSAIAGEPL-YLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNG-----T 166
PF + V + + + + + +++ + K+ +
Sbjct: 3 DPFTKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIE 62
Query: 167 LLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHS-------- 218
+ +E +Q + D G Y + + + S V + EFQ
Sbjct: 63 MFMEKLQDE-DEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFV 121
Query: 219 ---------GDRAGVQCLVTKGDPPLTISWLKNGLPI 246
++C V I W K+ I
Sbjct: 122 EYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREI 158
Score = 60.3 bits (146), Expect = 3e-11
Identities = 20/107 (18%), Positives = 36/107 (33%), Gaps = 23/107 (21%)
Query: 8 KFIQQTLQPGPPVSLKCIATGNPTP-HISWKLDGYPL-AGDRHENKNRIGEARVQQLPLN 65
+++ + V LKC HI W D + ++H+ K+
Sbjct: 122 EYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDG------------ 169
Query: 66 RRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTG 112
TLLI K D G+Y + +G+ S+ + +
Sbjct: 170 -------ICTLLITEFSKK-DAGIYEVILKDDRGKDKSR-LKLVDEA 207
Score = 38.8 bits (90), Expect = 6e-04
Identities = 6/45 (13%), Positives = 13/45 (28%), Gaps = 3/45 (6%)
Query: 207 IAPFEFQP---DLHSGDRAGVQCLVTKGDPPLTISWLKNGLPILS 248
I PF ++ + K ++++ N I
Sbjct: 2 IDPFTKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFE 46
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta
sandwich, immunoglobulin-like, immune system receptor;
1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A
1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Length = 175
Score = 94.6 bits (235), Expect = 3e-24
Identities = 28/193 (14%), Positives = 54/193 (27%), Gaps = 38/193 (19%)
Query: 12 QTLQPGPPVSLKCIATGNPTPH-ISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKV 70
++ V+LKC +P + W + ++
Sbjct: 17 YSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQ------------------------ 52
Query: 71 FPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGNVSAIAGEPL 130
+ I+ +D G Y C S V + V + +P+
Sbjct: 53 --ASSYFIDAATV-NDSGEYRCQTNLSTL---SDPVQLEVHIGWLLLQAPRWVFKEEDPI 106
Query: 131 YLGCPV-AGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQ 189
+L C + +T+ + + N I G Y+C
Sbjct: 107 HLRCHSWKNTALHKVTYLQNGKDRKYFH-----HNSDFHIPKATLKD-SGSYFCRGLVGS 160
Query: 190 GRSSSQNVHISVT 202
SS+ V+I++T
Sbjct: 161 KNVSSETVNITIT 173
Score = 66.4 bits (162), Expect = 9e-14
Identities = 20/121 (16%), Positives = 35/121 (28%), Gaps = 13/121 (10%)
Query: 127 GEPLYLGCPVAGYP-IESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTA 185
+ + L C A P S W + + I+ +D G Y C
Sbjct: 22 KDSVTLKCQGAYSPEDNSTQWFHNESLISSQ-------ASSYFIDAATV-NDSGEYRCQT 73
Query: 186 TNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISWLKNGLP 245
S V + V + + D ++C K +++L+NG
Sbjct: 74 NLSTL---SDPVQLEVHIGWLLLQAPRWV-FKEEDPIHLRCHSWKNTALHKVTYLQNGKD 129
Query: 246 I 246
Sbjct: 130 R 130
Score = 54.9 bits (132), Expect = 1e-09
Identities = 19/114 (16%), Positives = 35/114 (30%), Gaps = 26/114 (22%)
Query: 1 SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPH-ISWKLDGYPLAGDRHENKNRIGEARV 59
L+ + + + P+ L+C + N H +++ +G H
Sbjct: 87 HIGWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYFHH----------- 135
Query: 60 QQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGA 113
N I G Y+C SS+ V+I++T A
Sbjct: 136 -------------NSDFHIPKATLKD-SGSYFCRGLVGSKNVSSETVNITITQA 175
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 100
Score = 91.3 bits (227), Expect = 7e-24
Identities = 33/111 (29%), Positives = 48/111 (43%), Gaps = 20/111 (18%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
P ++ QTL LKC ATG+P P ISW +G+ G
Sbjct: 9 PIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGR---------------- 52
Query: 63 PLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGA 113
+ R + GTL I+N++ D G Y C AT+ G +S + + VT +
Sbjct: 53 --DPRATIQEQGTLQIKNLRIS-DTGTYTCVATSSSG-ETSWSAVLDVTES 99
Score = 78.6 bits (194), Expect = 5e-19
Identities = 27/97 (27%), Positives = 41/97 (42%), Gaps = 5/97 (5%)
Query: 109 SVTGAP--FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLN-RRQKVFPNG 165
S + P ++ N + L C G P+ I+W K P R + G
Sbjct: 3 SGSSGPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQG 62
Query: 166 TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVT 202
TL I+N++ D G Y C AT+ G +S + + VT
Sbjct: 63 TLQIKNLRIS-DTGTYTCVATSSSG-ETSWSAVLDVT 97
Score = 33.9 bits (78), Expect = 0.011
Identities = 16/50 (32%), Positives = 19/50 (38%), Gaps = 1/50 (2%)
Query: 200 SVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSA 249
+ PP I L A ++C T GDP ISWLK G
Sbjct: 4 GSSGPPIILQGPANQTLAVDGTALLKCKAT-GDPLPVISWLKEGFTFPGR 52
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human
coxsackievirus A21, cryo-electron
microscopy,virus-receptor complex, icosahedral virus;
HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3
b.1.1.4 b.1.1.4 b.1.1.4
Length = 450
Score = 97.6 bits (242), Expect = 1e-23
Identities = 32/253 (12%), Positives = 65/253 (25%), Gaps = 41/253 (16%)
Query: 11 QQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKV 70
+ L G V + C + + + + PL +++ +
Sbjct: 8 KVILPRGGSVLVTCSTSCDQPMLLGIE------------------------TPLPKKELL 43
Query: 71 FPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP--FVRPMGNVSAIAGE 128
P + + + C + S+ ++V P G+
Sbjct: 44 LPGNNRKVYELSNVQEDSQPMCYSNC-PDGQSTAKTFLTVYWTPERVELAPLPSWQPVGK 102
Query: 129 PLYLGCPVAG-YPIESIT--WQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTA 185
L L C V G P ++T +G ++L T + + + C
Sbjct: 103 NLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDH-HGANFSCRT 161
Query: 186 TNKQG-------RSSSQNVHISVTVPPKIAPFEFQPD-LHSGDRAGVQCLVTKGDP--PL 235
++S + V P P P L + V C + P
Sbjct: 162 ELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEA 221
Query: 236 TISWLKNGLPILS 248
+ +
Sbjct: 222 QVHLALGDQRLNP 234
Score = 97.2 bits (241), Expect = 2e-23
Identities = 33/247 (13%), Positives = 63/247 (25%), Gaps = 39/247 (15%)
Query: 11 QQTLQPGPPVSLKCIATGN---PTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRR 67
+ L+ ++ C G + L L +
Sbjct: 197 PRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSF------------- 243
Query: 68 QKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQ-NVHISVTGAPFVRPMGNVSAIA 126
+ + +D C + V I AP V
Sbjct: 244 -----SAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILT-KPEVSE 297
Query: 127 GEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTAT 186
G + + C +P +T Q R Q L+ + + + C+AT
Sbjct: 298 GTEVTVKC--EAHPRAKVTLNGVPAQPLGPRAQ--------LLLKATPEDNGRSFSCSAT 347
Query: 187 NKQGRSS---SQNVHISVTVPPKIAPFEFQPD--LHSGDRAGVQCLVTKGDPPLTISWLK 241
+ +Q + V P++ + + + C G+P + LK
Sbjct: 348 LEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAW-GNPLPELKCLK 406
Query: 242 NGLPILS 248
+G L
Sbjct: 407 DGTFPLP 413
Score = 90.3 bits (223), Expect = 7e-21
Identities = 35/211 (16%), Positives = 58/211 (27%), Gaps = 49/211 (23%)
Query: 1 SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQ 60
S P + + G V++KC A ++
Sbjct: 282 SFPAPNVILTKPEVSEGTEVTVKCEAHPRAKVTLNGVPAQPLG----------------- 324
Query: 61 QLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSS---SQNVHISVTGAP--- 114
P LL+ + + + C+AT + +Q + V P
Sbjct: 325 -----------PRAQLLL-KATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLD 372
Query: 115 FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQK-GVQQLPLNRRQKVFPNGTLLIENVQ 173
GN + C G P+ + K G LP+ V
Sbjct: 373 ERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGESVTV------------ 420
Query: 174 KDHDRGVYWCTATNKQGRSSSQNVHISVTVP 204
G Y C A + QG ++ V ++V P
Sbjct: 421 TRDLEGTYLCRARSTQG-EVTREVTVNVLSP 450
Score = 76.8 bits (188), Expect = 2e-16
Identities = 29/263 (11%), Positives = 66/263 (25%), Gaps = 38/263 (14%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGN---PTPHISWKLDGYPLAGDRHENKNRIGEARV 59
++ + G ++L+C G + L + + +GE
Sbjct: 87 ERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKEL-----KREPAVGE--- 138
Query: 60 QQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQG-------RSSSQNVHISVTG 112
P V++DH + C ++S +
Sbjct: 139 ------------PAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFV 186
Query: 113 APF--VRPMGNVSAIAGEPLYLGCPVAG---YPIESITWQKGVQQL-PLNRRQKVFPNGT 166
P + + + C + G + G Q+L P +
Sbjct: 187 LPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAK 246
Query: 167 LLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQC 226
+ +D C + +++ P +P++ G V+C
Sbjct: 247 ASVSVTAEDEGTQRLTCAVILGNQSQETL-QTVTIYSFPAPNVILTKPEVSEGTEVTVKC 305
Query: 227 LVTKGDPPLTISWLKNGLPILSA 249
+T++ + A
Sbjct: 306 EAH-PRAKVTLNGVPAQPLGPRA 327
Score = 69.1 bits (168), Expect = 1e-13
Identities = 21/140 (15%), Positives = 43/140 (30%), Gaps = 9/140 (6%)
Query: 121 NVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGV 180
V G + + C + + + PL +++ + P + + +
Sbjct: 8 KVILPRGGSVLVTCSTSCDQPMLLGIET-----PLPKKELLLPGNNRKVYELSNVQEDSQ 62
Query: 181 YWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQP-DLHSGDRAGVQCLVTKGDPP--LTI 237
C + S+ ++V P+ P G ++C V G P LT+
Sbjct: 63 PMCYSNC-PDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTV 121
Query: 238 SWLKNGLPILSAMGVGRKGN 257
L+ + VG
Sbjct: 122 VLLRGEKELKREPAVGEPAE 141
>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon,
OKT3 FAB, signaling protein/antibiotic complex; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*
Length = 204
Score = 93.0 bits (230), Expect = 2e-23
Identities = 32/218 (14%), Positives = 61/218 (27%), Gaps = 58/218 (26%)
Query: 15 QPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNG 74
Q V L C +I+W DG + + K
Sbjct: 16 QEDGSVLLTC---DAEAKNITWFKDGKMIGFLTEDKK----------------------- 49
Query: 75 TLLIENVQKDHDRGVYWCTATNKQGR-------------SSSQNVHISVTGAPFVRPMGN 121
+ + KD RG+Y C + + + + + G+
Sbjct: 50 KWNLGSNAKD-PRGMYQCKGSQNKSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGS 108
Query: 122 VS--------------AIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNG-- 165
+I+G + L CP YP I WQ + + + K +
Sbjct: 109 DGNEEMGGITQTPYKVSISGTTVILTCPQ--YPGSEILWQHNDKNIGGDEDDKNIGSDED 166
Query: 166 TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTV 203
L ++ + G Y C + ++ +++ V
Sbjct: 167 HLSLKEFSELEQSGYYVCYPRGSKPEDANFYLYLRARV 204
Score = 61.8 bits (149), Expect = 7e-12
Identities = 23/146 (15%), Positives = 39/146 (26%), Gaps = 37/146 (25%)
Query: 127 GEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTAT 186
+ L C ++ITW K + + K + + KD RG+Y C +
Sbjct: 18 DGSVLLTC---DAEAKNITWFKDGKMIGFLTEDKK----KWNLGSNAKD-PRGMYQCKGS 69
Query: 187 NKQGR-----------SSSQNVHISVTVPPKIAPFEFQPDLH---------------SGD 220
+ + ++ K + D + SG
Sbjct: 70 QNKSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSISGT 129
Query: 221 RAGVQCLVTKGDPPLTISWLKNGLPI 246
+ C P I W N I
Sbjct: 130 TVILTCPQ---YPGSEILWQHNDKNI 152
Score = 28.7 bits (63), Expect = 1.5
Identities = 9/44 (20%), Positives = 13/44 (29%), Gaps = 4/44 (9%)
Query: 214 PDLHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSAMGVGRKGN 257
D + C I+W K+G I +K N
Sbjct: 13 YDYQEDGSVLLTC----DAEAKNITWFKDGKMIGFLTEDKKKWN 52
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain, membrane,
transmembrane, receptor; 1.60A {Mus musculus} PDB:
3bp5_B 3rnq_B 3bov_A 3rnk_B
Length = 202
Score = 92.8 bits (230), Expect = 3e-23
Identities = 33/196 (16%), Positives = 55/196 (28%), Gaps = 16/196 (8%)
Query: 17 GPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTL 76
G VSL+C + + EN + R L Q
Sbjct: 17 GSSVSLECDFDRRECTELEGIRASLQ----KVENDTSLQSERAT---LLEEQLPLGKALF 69
Query: 77 LIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGNVSAIAGEPLYLGCPV 136
I +VQ D G Y C + + + V + + + L C
Sbjct: 70 HIPSVQVR-DSGQYRCLVICGAA-WDYKYLTVKVKASYMRIDTRILEVPGTGEVQLTCQA 127
Query: 137 AGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIEN--VQKDHDRGVYWCTATNKQGRSSS 194
GYP+ ++WQ +P N P G + + K + C N
Sbjct: 128 RGYPLAEVSWQN--VSVPANTSHIRTPEGLYQVTSVLRLKPQPSRNFSCMFWNAHM---K 182
Query: 195 QNVHISVTVPPKIAPF 210
+ + ++ P
Sbjct: 183 ELTSAIIDPLSRMEPK 198
Score = 60.4 bits (146), Expect = 2e-11
Identities = 24/160 (15%), Positives = 40/160 (25%), Gaps = 21/160 (13%)
Query: 109 SVTGAPFVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLN------RRQKVF 162
+VT P + G + L C + + Q N R +
Sbjct: 4 TVTA-----PKEVYTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLL 58
Query: 163 P------NGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDL 216
I +VQ D G Y C + + + V
Sbjct: 59 EEQLPLGKALFHIPSVQVR-DSGQYRCLVICGAA-WDYKYLTVKVKASYMRIDTRILEV- 115
Query: 217 HSGDRAGVQCLVTKGDPPLTISWLKNGLPILSAMGVGRKG 256
+ C G P +SW +P ++ +G
Sbjct: 116 PGTGEVQLTCQAR-GYPLAEVSWQNVSVPANTSHIRTPEG 154
Score = 45.4 bits (107), Expect = 5e-06
Identities = 18/103 (17%), Positives = 27/103 (26%), Gaps = 24/103 (23%)
Query: 17 GPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTL 76
V L C A G P +SW+ +P N P G
Sbjct: 118 TGEVQLTCQARGYPLAEVSWQNVS---------------------VPANTSHIRTPEGLY 156
Query: 77 LIEN--VQKDHDRGVYWCTATNKQGR-SSSQNVHISVTGAPFV 116
+ + K + C N + +S + P V
Sbjct: 157 QVTSVLRLKPQPSRNFSCMFWNAHMKELTSAIIDPLSRMEPKV 199
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody,
immune system; HET: NAG BMA MAN FUC; 2.20A {Homo
sapiens} PDB: 3sgk_C*
Length = 204
Score = 92.3 bits (229), Expect = 5e-23
Identities = 29/200 (14%), Positives = 53/200 (26%), Gaps = 38/200 (19%)
Query: 12 QTLQPGPPVSLKCIATGNPTPH-ISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKV 70
+ V+LKC +P W + ++
Sbjct: 17 YRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQ------------------------ 52
Query: 71 FPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGNVSAIAGEPL 130
+ I+ D D G Y C S V + V + +P+
Sbjct: 53 --ASSYFIDAATVD-DSGEYRCQTQLSTL---SDPVQLEVHIGWLLLQAPRWVFKEEDPI 106
Query: 131 YLGCPV-AGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQ 189
+L C + +T+ + + N I G Y+C
Sbjct: 107 HLRCHSWKNTALHKVTYLQNGKGRKYFH-----HNSDFYIPKATLKD-SGSYFCRGLVGS 160
Query: 190 GRSSSQNVHISVTVPPKIAP 209
SS+ V I++T ++
Sbjct: 161 KNVSSETVQITITQGLAVST 180
Score = 62.6 bits (152), Expect = 4e-12
Identities = 21/121 (17%), Positives = 36/121 (29%), Gaps = 13/121 (10%)
Query: 127 GEPLYLGCPVAGYP-IESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTA 185
+ + L C A P +S W + + I+ D D G Y C
Sbjct: 22 KDSVTLKCQGAYSPEDQSTQWFHNESLISSQ-------ASSYFIDAATVD-DSGEYRCQT 73
Query: 186 TNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISWLKNGLP 245
S V + V + + D ++C K +++L+NG
Sbjct: 74 QLSTL---SDPVQLEVHIGWLLLQAPRWV-FKEEDPIHLRCHSWKNTALHKVTYLQNGKG 129
Query: 246 I 246
Sbjct: 130 R 130
Score = 53.7 bits (129), Expect = 5e-09
Identities = 18/115 (15%), Positives = 33/115 (28%), Gaps = 26/115 (22%)
Query: 1 SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPH-ISWKLDGYPLAGDRHENKNRIGEARV 59
L+ + + + P+ L+C + N H +++ +G H
Sbjct: 87 HIGWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKYFHH----------- 135
Query: 60 QQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP 114
N I G Y+C SS+ V I++T
Sbjct: 136 -------------NSDFYIPKATLKD-SGSYFCRGLVGSKNVSSETVQITITQGL 176
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural
plasticity, cell-surface dimerizatio adhesion; HET: NAG
FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4
PDB: 1p53_A*
Length = 265
Score = 93.2 bits (231), Expect = 7e-23
Identities = 31/246 (12%), Positives = 62/246 (25%), Gaps = 39/246 (15%)
Query: 12 QTLQPGPPVSLKCIATGN---PTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQ 68
+ L+ ++ C G + L L P
Sbjct: 13 RVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLN------------------PTVTYG 54
Query: 69 KVFPNGTLLIENVQKDHDRGVYWCTATNKQG-RSSSQNVHISVTGAPFVRPMGNVSAIAG 127
+ + +D C + + Q V I AP V G
Sbjct: 55 NDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILT-KPEVSEG 113
Query: 128 EPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATN 187
+ + C ++ + L+ + + + C+AT
Sbjct: 114 TEVTVKCEAHPRAKVTLNGVPA----------QPLGPRAQLLLKATPEDNGRSFSCSATL 163
Query: 188 K---QGRSSSQNVHISVTVPPKIAPFEFQPDL--HSGDRAGVQCLVTKGDPPLTISWLKN 242
+ Q +Q + V P++ + + + C G+P + LK+
Sbjct: 164 EVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMC-QAWGNPLPELKCLKD 222
Query: 243 GLPILS 248
G L
Sbjct: 223 GTFPLP 228
Score = 89.0 bits (220), Expect = 2e-21
Identities = 37/211 (17%), Positives = 61/211 (28%), Gaps = 49/211 (23%)
Query: 1 SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQ 60
S P + + G V++KC A L+G P
Sbjct: 97 SFPAPNVILTKPEVSEGTEVTVKCEAHPRAK----VTLNGVPA----------------- 135
Query: 61 QLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNK---QGRSSSQNVHISVTGAPFVR 117
+ L+ + + + C+AT + Q +Q + V P +
Sbjct: 136 --------QPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLD 187
Query: 118 PM---GNVSAIAGEPLYLGCPVAGYPIESITWQK-GVQQLPLNRRQKVFPNGTLLIENVQ 173
GN + C G P+ + K G LP+ V
Sbjct: 188 ERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGESVTV------------ 235
Query: 174 KDHDRGVYWCTATNKQGRSSSQNVHISVTVP 204
G Y C A + QG ++ V ++V P
Sbjct: 236 TRDLEGTYLCRARSTQG-EVTREVTVNVLSP 265
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in
U twenty twenty, neurogenesis, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 88.7 bits (220), Expect = 1e-22
Identities = 32/130 (24%), Positives = 50/130 (38%), Gaps = 23/130 (17%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
P + + QT+ L C+ATG+P P I W+ DG ++
Sbjct: 9 PVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQ---------------- 52
Query: 63 PLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP-FVRP--M 119
+ R K NG L I + D G Y C A+ G ++ + +I V V+P
Sbjct: 53 --DSRIKQLENGVLQIRYAKLG-DTGRYTCIASTPSG-EATWSAYIEVQEFGVPVQPPRP 108
Query: 120 GNVSAIAGEP 129
+ + I P
Sbjct: 109 TDPNLIPSAP 118
Score = 84.0 bits (208), Expect = 6e-21
Identities = 26/104 (25%), Positives = 39/104 (37%), Gaps = 4/104 (3%)
Query: 109 SVTGAP-FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQK-GVQQLPLNRRQKVFPNGT 166
+G P + N + L C G P+ +I W+K GV + R K NG
Sbjct: 4 GSSGPPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGV 63
Query: 167 LLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPF 210
L I + D G Y C A+ G ++ + +I V
Sbjct: 64 LQIRYAKLG-DTGRYTCIASTPSG-EATWSAYIEVQEFGVPVQP 105
Score = 32.0 bits (73), Expect = 0.050
Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Query: 200 SVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISWLKNGLPILS 248
+ PP I + + C+ T G P TI W K+G+ + +
Sbjct: 4 GSSGPPVIRQGPVNQTVAVDGTFVLSCVAT-GSPVPTILWRKDGVLVST 51
>2v9t_A Roundabout homolog 1; structural protein-receptor complex,
developmental protein, domain, roundabout, chemotaxis,
LRR domain; 1.70A {Homo sapiens}
Length = 117
Score = 87.9 bits (218), Expect = 2e-22
Identities = 28/116 (24%), Positives = 45/116 (38%), Gaps = 18/116 (15%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
P+++ + G P +L C A G PTP I W G + D+ + ++
Sbjct: 10 PRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHR-------- 61
Query: 63 PLNRRQKVFPNGTLLIENVQ----KDHDRGVYWCTATNKQGRSSSQNVHISVTGAP 114
+ P+G+L + D GVY C A N G + S + + V A
Sbjct: 62 ------MLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAAAA 111
Score = 82.2 bits (203), Expect = 3e-20
Identities = 25/102 (24%), Positives = 41/102 (40%), Gaps = 9/102 (8%)
Query: 115 FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNR-----RQKVFPNGTLLI 169
V ++ GEP L C G P +I W KG +++ ++ + + P+G+L
Sbjct: 12 IVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFF 71
Query: 170 ENVQ----KDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKI 207
+ D GVY C A N G + S + + V
Sbjct: 72 LRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAAAAHH 113
Score = 34.8 bits (80), Expect = 0.006
Identities = 14/57 (24%), Positives = 20/57 (35%), Gaps = 7/57 (12%)
Query: 201 VTVPPKIAPFEFQP---DLHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSAMGVGR 254
PP+ P + G+ A + C G P TI W K G + + R
Sbjct: 6 EDFPPR---IVEHPSDLIVSKGEPATLNCKAE-GRPTPTIEWYKGGERVETDKDDPR 58
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain,
cell adhesion, cell junction, glycoprotein,
immunoglobulin domain, membrane; HET: NAG FUC; 2.19A
{Mus musculus} PDB: 3mj7_A* 3mj9_A*
Length = 268
Score = 90.7 bits (224), Expect = 6e-22
Identities = 33/240 (13%), Positives = 69/240 (28%), Gaps = 43/240 (17%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCI---ATGNPTPHISWKLDGYPLAGDR----HENKNRIG 55
P L Q + G V + C+ + W + + +
Sbjct: 6 PGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVP 65
Query: 56 EARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPF 115
R Q +G+LL+++VQK D G+Y C K S + + P
Sbjct: 66 TGRFQNRSHLVGDTFHNDGSLLLQDVQKA-DEGIYTCEIRLKNE-SMVMKKPVELWVLPE 123
Query: 116 VRPMGNVSAIAGEPLYLGCPVAGYP---IESITWQKGVQQLPLNRRQKVF---------- 162
+ G+ + C + + + W +
Sbjct: 124 EPRD--LRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQ 181
Query: 163 -----------------PNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPP 205
+G++ ++ V++ D+G+Y C+ + S + + + V
Sbjct: 182 SLGRFRNRVDLTGDISRNDGSIKLQTVKES-DQGIYTCSIYVGKL-ESRKTIVLHVVQDE 239
Score = 59.5 bits (143), Expect = 9e-11
Identities = 26/165 (15%), Positives = 52/165 (31%), Gaps = 34/165 (20%)
Query: 110 VTGAP-FVRPMGNVSAIAGEPLYLGCPV---AGYPIESITWQKGVQQLPLNRRQKVF--- 162
G P + GE + +GC V ++ + W + + +
Sbjct: 2 SQGLPGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSN 61
Query: 163 --------------------PNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVT 202
+G+LL+++VQK D G+Y C K S + +
Sbjct: 62 LSVPTGRFQNRSHLVGDTFHNDGSLLLQDVQKA-DEGIYTCEIRLKNE-SMVMKKPVELW 119
Query: 203 VPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPP--LTISWLKNGLP 245
V P + GD ++C + + ++W+ +
Sbjct: 120 VLP---EEPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGS 161
Score = 57.2 bits (137), Expect = 6e-10
Identities = 14/117 (11%), Positives = 37/117 (31%), Gaps = 13/117 (11%)
Query: 11 QQTLQPGPPVSLKCIATGNPTPH---ISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRR 67
++ G ++C ++W + + L R
Sbjct: 127 DLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRF 186
Query: 68 QKVF--------PNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFV 116
+ +G++ ++ V++ D+G+Y C+ + S + + + V F
Sbjct: 187 RNRVDLTGDISRNDGSIKLQTVKES-DQGIYTCSIYVGKL-ESRKTIVLHVVQDEFQ 241
>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet,
STRU genomics, berkeley structural genomics center,
BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A
Length = 137
Score = 86.2 bits (213), Expect = 2e-21
Identities = 27/123 (21%), Positives = 47/123 (38%), Gaps = 8/123 (6%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
+ + Q G V L C A G+P P I W +G + + AR+ ++
Sbjct: 22 AGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDG---ARLDRV 78
Query: 63 PLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGNV 122
++ T+ I+ + ++ D G Y C A+N R+ V +VR V
Sbjct: 79 HIHATYHQHAASTISIDTLVEE-DTGTYECRASNDPDRNHL-TRAPRVK---WVRAQAVV 133
Query: 123 SAI 125
+
Sbjct: 134 LVL 136
Score = 63.1 bits (153), Expect = 7e-13
Identities = 20/111 (18%), Positives = 35/111 (31%), Gaps = 18/111 (16%)
Query: 101 SSSQNVHISVTGAP-FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLP----- 154
S + + FV+ + G + L C G P+ I W Q
Sbjct: 9 HHSSGLVPRGSHMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQ 68
Query: 155 -----------LNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSS 194
++ T+ I+ + ++ D G Y C A+N R+
Sbjct: 69 LWDGARLDRVHIHATYHQHAASTISIDTLVEE-DTGTYECRASNDPDRNHL 118
Score = 33.8 bits (77), Expect = 0.017
Identities = 16/72 (22%), Positives = 18/72 (25%), Gaps = 6/72 (8%)
Query: 190 GRSSSQNVHISVTVPPKIAPFEFQPDLHS-----GDRAGVQCLVTKGDPPLTISWLKNGL 244
G S + H S VP F S G + C G P I W G
Sbjct: 2 GSSHHHHHHSSGLVPRGSHMAGFVQAPLSQQRWVGGSVELHCEAV-GSPVPEIQWWFEGQ 60
Query: 245 PILSAMGVGRKG 256
G
Sbjct: 61 GPNDICSQLWDG 72
>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage
capsid decorative protein, interaction with bacteria;
1.95A {Enterobacteria phage RB49}
Length = 304
Score = 89.1 bits (220), Expect = 4e-21
Identities = 31/251 (12%), Positives = 64/251 (25%), Gaps = 59/251 (23%)
Query: 12 QTLQPGPPVSLKCIATGNPTPH----ISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRR 67
+ G +L G+ +W D P +
Sbjct: 12 RCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENN--------------------- 50
Query: 68 QKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP---FVRPMGNVSA 124
TL + + + + G Y T + +S ++ + A + +
Sbjct: 51 -----TATLTVADATSE-NAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYV 104
Query: 125 IAGEPLYLGC--------PVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDH 176
+ + L A +W KG + + I+ D
Sbjct: 105 SSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVID--------TTQDITIQEFTAD- 155
Query: 177 DRGVYWCTATNKQGRSSSQNVHISVTVPPKI-APFEFQPDLHSGDRAGVQCLVT------ 229
GVY + S++ + + + G+ + +V+
Sbjct: 156 KNGVYTVKVWGESEDSAASASTKIMLATMNVDQDVVESKTVALGNEISLNYVVSEDIVGD 215
Query: 230 -KGDPPLTISW 239
G P LTI +
Sbjct: 216 SSGMPNLTIKY 226
Score = 70.2 bits (171), Expect = 2e-14
Identities = 32/226 (14%), Positives = 57/226 (25%), Gaps = 61/226 (26%)
Query: 12 QTLQPGPPVSLKC---IATGNPTP-----HISWKLDGYPLAGDRHENKNRIGEARVQQLP 63
+ V L + G H SW +
Sbjct: 102 FYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVIDT------------------ 143
Query: 64 LNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISV--TGAPFVRPMGN 121
+ I+ D GVY + S++ + T + +
Sbjct: 144 ---------TQDITIQEFTAD-KNGVYTVKVWGESEDSAASASTKIMLATMNVDQDVVES 193
Query: 122 VSAIAGEPLYLGCPVA--------GYPIESITWQ-------------KGVQQLPLNRRQK 160
+ G + L V+ G P +I + G +
Sbjct: 194 KTVALGNEISLNYVVSEDIVGDSSGMPNLTIKYNWYLQREGQLSPTLIGSEVGEALEGFS 253
Query: 161 VFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPK 206
+ P+G L E+ D D +WC A Q + V ++ + K
Sbjct: 254 ITPDGHLFKESATYD-DTAKFWCVAKLYQQ-IEDETVEVAASTSRK 297
Score = 58.7 bits (141), Expect = 3e-10
Identities = 27/143 (18%), Positives = 44/143 (30%), Gaps = 23/143 (16%)
Query: 121 NVSAIAGEPLYLGCPVAGYP----IESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDH 176
+AG+ L VAG + TW K Q N TL + + +
Sbjct: 11 KRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENN-------TATLTVADATSE- 62
Query: 177 DRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPD---LHSGDRAGVQCLVTK--G 231
+ G Y T + +S ++ + + +P + S + V G
Sbjct: 63 NAGSYKVTVQDTDTMTSVESEVFLMEEAE-LIVNITEPQHFYVSSQTDVELHATVKFSGG 121
Query: 232 DPP-----LTISWLKNGLPILSA 249
P L SW K I +
Sbjct: 122 KTPADNYELHYSWSKGEDVIDTT 144
Score = 30.2 bits (67), Expect = 0.62
Identities = 11/52 (21%), Positives = 19/52 (36%), Gaps = 7/52 (13%)
Query: 207 IAP-FEFQPD---LHSGDRAGVQCLVTKGDP---PLTISWLKNGLPILSAMG 251
+A Q + +GD + V +P LT +W K+ P +
Sbjct: 1 MAFTVSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENNTA 52
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein;
2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Length = 154
Score = 83.7 bits (207), Expect = 2e-20
Identities = 27/140 (19%), Positives = 45/140 (32%), Gaps = 10/140 (7%)
Query: 83 KDHDRGVYWCTATNKQGRSSS---QNVHISVTGAP-FVRPMGNVSAIAGEPLYLGCPVAG 138
K NK + + P F + + ++ + G C V G
Sbjct: 8 KASGSSPTSPINANKVENEDAFLEEVAEEKPHVKPYFTKTILDMEVVEGSAARFDCKVEG 67
Query: 139 YPIESITWQKGVQQLPLNRRQKVFPNG----TLLIENVQKDHDRGVYWCTATNKQGRSSS 194
YP + W K + +R ++ + +L I V D D Y C A N G ++
Sbjct: 68 YPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGD-DDAKYTCKAVNSLGEATC 126
Query: 195 QNVHISVTVPPKIAPFEFQP 214
+ V K E +
Sbjct: 127 -TAELLVETMGKEGEGEGEG 145
Score = 64.5 bits (157), Expect = 3e-13
Identities = 21/101 (20%), Positives = 30/101 (29%), Gaps = 16/101 (15%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
P + + G C G P P + W D P+ RH ++
Sbjct: 42 PYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHF--------QIDYD 93
Query: 63 PLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSS 103
+L I V D D Y C A N G ++
Sbjct: 94 EEGNC-------SLTISEVCGD-DDAKYTCKAVNSLGEATC 126
Score = 42.9 bits (101), Expect = 1e-05
Identities = 15/77 (19%), Positives = 23/77 (29%), Gaps = 6/77 (7%)
Query: 174 KDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAP-FEFQP---DLHSGDRAGVQCLVT 229
K NK + + P + P F ++ G A C V
Sbjct: 8 KASGSSPTSPINANKVE-NEDAFLEEVAEEKPHVKPYFTKTILDMEVVEGSAARFDCKVE 66
Query: 230 KGDPPLTISWLKNGLPI 246
G P + W K+ P+
Sbjct: 67 -GYPDPEVMWFKDDNPV 82
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling
protein complex, angiogenesis, glycoprotein, HOST-virus
interaction, membrane; HET: NAG BMA; 2.70A {Homo
sapiens} PDB: 2x1x_R*
Length = 213
Score = 85.2 bits (210), Expect = 2e-20
Identities = 31/210 (14%), Positives = 57/210 (27%), Gaps = 37/210 (17%)
Query: 13 TLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFP 72
T V + C+ + ++S + +P R
Sbjct: 20 TENKNKTVVIPCLGS-ISNLNVSL----------------CARYPEKRFVPDGNRISWDS 62
Query: 73 NGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPF----VRPMGNVSAIAGE 128
I + G+ +C A S + V G + P + GE
Sbjct: 63 KKGFTIPSYMIS-YAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGE 121
Query: 129 PLYLGCPVAGYPIE--SITWQKGVQQLPLNR-----------RQKVFPNGTLLIENVQKD 175
L L C W+ + + + TL I+ V +
Sbjct: 122 KLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRS 181
Query: 176 HDRGVYWCTATNKQGRSSSQNVHISVTVPP 205
D+G+Y C A++ + + + V P
Sbjct: 182 -DQGLYTCAASSGLM-TKKNSTFVRVHEDP 209
Score = 59.4 bits (143), Expect = 7e-11
Identities = 20/160 (12%), Positives = 51/160 (31%), Gaps = 15/160 (9%)
Query: 112 GAPFVRPM------GNVSAIAGEPLYLGCPVAGYPIE-SITWQKGVQQLPLNRRQKVF-P 163
+PF+ + ++ + + + C + + S+ + ++ + + +
Sbjct: 3 RSPFIASVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDS 62
Query: 164 NGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQP----DLHSG 219
I + G+ +C A S ++I V V +I P +L G
Sbjct: 63 KKGFTIPSYMIS-YAGMVFCEAKINDESYQS-IMYIVVVVGYRIYDVVLSPSHGIELSVG 120
Query: 220 DRAGVQCLVT-KGDPPLTISWLKNGLPILSAMGVGRKGNP 258
++ + C + + + +W V R
Sbjct: 121 EKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKT 160
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus}
SCOP: b.1.1.1 b.1.1.3
Length = 176
Score = 84.2 bits (208), Expect = 3e-20
Identities = 29/184 (15%), Positives = 59/184 (32%), Gaps = 25/184 (13%)
Query: 21 SLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIEN 80
++ + + W+ +A + + + + ++ NG L I+N
Sbjct: 17 NIPNFQMTDDIDEVRWERGSTLVAEFKRKM---------KPFLKSGAFEILANGDLKIKN 67
Query: 81 VQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGNVSAIAGEPLYLGCPVAGYP 140
+ +D D G Y T + G + N + + V + L C V
Sbjct: 68 LTRD-DSGTYNVTVYSTNG-TRILNKALDLRILEMVSKP--MIYWECSNATLTCEVLEGT 123
Query: 141 IESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHIS 200
+ +G + L R++ + T + R + C A N+ + S
Sbjct: 124 DVELKLYQGKEHLRSLRQKTMSYQWT---------NLRAPFKCKAVNRVSQESE---MEV 171
Query: 201 VTVP 204
V P
Sbjct: 172 VNCP 175
Score = 80.4 bits (198), Expect = 7e-19
Identities = 27/145 (18%), Positives = 54/145 (37%), Gaps = 20/145 (13%)
Query: 117 RPMGNVSAIAGEPLYLGCPV--AGYPIESITWQKG----------VQQLPLNRRQKVFPN 164
R G V G + L P I+ + W++G ++ + ++ N
Sbjct: 1 RDSGTVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILAN 60
Query: 165 GTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDL-HSGDRAG 223
G L I+N+ +D D G Y T + G + N + + + ++ +P + A
Sbjct: 61 GDLKIKNLTRD-DSGTYNVTVYSTNG-TRILNKALDLRILEMVS----KPMIYWECSNAT 114
Query: 224 VQCLVTKGDPPLTISWLKNGLPILS 248
+ C V +G + + + S
Sbjct: 115 LTCEVLEGTDV-ELKLYQGKEHLRS 138
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2,
angiogenesis, ATP-binding, developmental protein,
differentiation, glycoprotein; 2.70A {Homo sapiens}
Length = 108
Score = 80.5 bits (199), Expect = 1e-19
Identities = 24/108 (22%), Positives = 42/108 (38%), Gaps = 4/108 (3%)
Query: 106 VHISVTGAP-FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFP- 163
+ + AP + N + GE + + C +G P I W K + L + +
Sbjct: 3 LTVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDG 62
Query: 164 NGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFE 211
N L I V+K+ D G+Y C A + G + + + + E
Sbjct: 63 NRNLTIRRVRKE-DEGLYTCQACSVLGCAKVE-AFFIIEGAQEKTNLE 108
Score = 74.7 bits (184), Expect = 2e-17
Identities = 28/112 (25%), Positives = 39/112 (34%), Gaps = 20/112 (17%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
P + QT G + + C A+GNP P I W D L D
Sbjct: 11 PTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDS--------------- 55
Query: 63 PLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP 114
N L I V+K+ D G+Y C A + G + + + GA
Sbjct: 56 ---GIVLKDGNRNLTIRRVRKE-DEGLYTCQACSVLGCAKVE-AFFIIEGAQ 102
Score = 39.2 bits (92), Expect = 1e-04
Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 7/53 (13%)
Query: 201 VTVPPKIAPFEFQPDLHS-----GDRAGVQCLVTKGDPPLTISWLKNGLPILS 248
+TV ++AP +L + G+ V C + G+PP I W K+ ++
Sbjct: 3 LTVLERVAP-TITGNLENQTTSIGESIEVSCTAS-GNPPPQIMWFKDNETLVE 53
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex,
alternative splicing, ATP-binding, calcium,
calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens}
PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Length = 107
Score = 79.4 bits (196), Expect = 3e-19
Identities = 31/97 (31%), Positives = 43/97 (44%), Gaps = 6/97 (6%)
Query: 113 AP-FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNG---TLL 168
P F+R V ++G L C V G P + W+KG QQL + R +G LL
Sbjct: 13 PPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLL 72
Query: 169 IENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPP 205
+ D GVY C A N G + + ++V PP
Sbjct: 73 LTAALPT-DAGVYVCRARNAAGEAYA-AAAVTVLEPP 107
Score = 69.0 bits (169), Expect = 3e-15
Identities = 28/117 (23%), Positives = 40/117 (34%), Gaps = 24/117 (20%)
Query: 1 SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQ 60
S P + + G LKC+ G P P + W+ G Q
Sbjct: 12 SPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGG-------------------Q 52
Query: 61 QLPLNRRQKVFPNG---TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP 114
QL + R +G LL+ D GVY C A N G + + ++V P
Sbjct: 53 QLAASERLSFPADGAEHGLLLTAALPT-DAGVYVCRARNAAGEAYA-AAAVTVLEPP 107
Score = 33.9 bits (78), Expect = 0.012
Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 218 SGDRAGVQCLVTKGDPPLTISWLKNGLPI 246
SG A ++C+V G+PP + W K G +
Sbjct: 27 SGAEAELKCVVL-GEPPPVVVWEKGGQQL 54
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane,
cytoplasm, cytoskeleton, disease mutation,
immunoglobulin domain; NMR {Homo sapiens}
Length = 116
Score = 79.4 bits (196), Expect = 3e-19
Identities = 26/115 (22%), Positives = 49/115 (42%), Gaps = 8/115 (6%)
Query: 101 SSSQNVHISVTGAP-FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLN-RR 158
+ AP F+ + + G+ + L C ++ P + W++ + + N R
Sbjct: 3 HHHHHHSHEHKRAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDR 62
Query: 159 QKVFPNG----TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAP 209
++ + TLLI++V K D G Y +A N+ G ++ N + VT P
Sbjct: 63 ISLYQDNTGRVTLLIKDVNKK-DAGWYTVSAVNEAGVTTC-NTRLDVTARPNQTL 115
Score = 72.0 bits (177), Expect = 2e-16
Identities = 30/121 (24%), Positives = 48/121 (39%), Gaps = 25/121 (20%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
P IYK + + G V L+C + P P + WK + + +
Sbjct: 16 PMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFN---------------- 59
Query: 63 PLNRRQKVFPNG----TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP-FVR 117
R ++ + TLLI++V K D G Y +A N+ G ++ N + VT P
Sbjct: 60 --TDRISLYQDNTGRVTLLIKDVNKK-DAGWYTVSAVNEAGVTTC-NTRLDVTARPNQTL 115
Query: 118 P 118
P
Sbjct: 116 P 116
Score = 33.5 bits (77), Expect = 0.017
Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 5/55 (9%)
Query: 196 NVHISVTVPPKIAP-FEFQP---DLHSGDRAGVQCLVTKGDPPLTISWLKNGLPI 246
+ H + K AP F ++P + GD ++C ++ PP + W +N +
Sbjct: 3 HHHHHHSHEHKRAPMFIYKPQSKKVLEGDSVKLECQIS-AIPPPKLFWKRNNEMV 56
>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1
(isoform 2); hydrolase, immunoglobulin domain, nucleus,
protease; 1.15A {Homo sapiens}
Length = 91
Score = 78.1 bits (193), Expect = 6e-19
Identities = 25/110 (22%), Positives = 40/110 (36%), Gaps = 26/110 (23%)
Query: 1 SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQ 60
S Q+ + Q L PG + L+C+A G+P PH W + PL +
Sbjct: 2 SKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHE-------------- 47
Query: 61 QLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISV 110
++ V + +G YWC N + S+ V I +
Sbjct: 48 -----------TKKLYMVPYVDLE-HQGTYWCHVYNDRDSQDSKKVEIII 85
Score = 70.8 bits (174), Expect = 3e-16
Identities = 20/96 (20%), Positives = 30/96 (31%), Gaps = 9/96 (9%)
Query: 112 GAP--FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLI 169
G+ + + G L L C G PI W K L ++
Sbjct: 1 GSKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHE------TKKLYMV 54
Query: 170 ENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPP 205
V + +G YWC N + S+ V I +
Sbjct: 55 PYVDLE-HQGTYWCHVYNDRDSQDSKKVEIIIDELN 89
Score = 35.8 bits (83), Expect = 0.002
Identities = 13/46 (28%), Positives = 18/46 (39%), Gaps = 7/46 (15%)
Query: 204 PPKIAPFEFQP---DLHSGDRAGVQCLVTKGDPPLTISWLKNGLPI 246
+I +P L G +QC+ G P W KN LP+
Sbjct: 3 KLQI---CVEPTSQKLMPGSTLVLQCVAV-GSPIPHYQWFKNELPL 44
>2ens_A Advanced glycosylation END product-specific receptor;
beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 96
Score = 77.1 bits (190), Expect = 2e-18
Identities = 27/109 (24%), Positives = 40/109 (36%), Gaps = 27/109 (24%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
QL+ + + PG V+L C P+P I W DG PL
Sbjct: 11 VQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLP---------------- 54
Query: 63 PLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRS-SSQNVHISV 110
P+ L++ + D+G Y C AT+ S+ V IS+
Sbjct: 55 ---------PSPVLILPEIGPQ-DQGTYSCVATHSSHGPQESRAVSISI 93
Score = 74.8 bits (184), Expect = 1e-17
Identities = 26/98 (26%), Positives = 36/98 (36%), Gaps = 9/98 (9%)
Query: 109 SVTGAP-FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTL 167
S V + G + L C V P I W K LPL P+ L
Sbjct: 6 SGLEEVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLP------PSPVL 59
Query: 168 LIENVQKDHDRGVYWCTATNKQGRS-SSQNVHISVTVP 204
++ + D+G Y C AT+ S+ V IS+ P
Sbjct: 60 ILPEIGPQ-DQGTYSCVATHSSHGPQESRAVSISIIEP 96
Score = 35.5 bits (82), Expect = 0.003
Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 219 GDRAGVQCLVTKGDPPLTISWLKNGLPI 246
G + C V P I W+K+G+P+
Sbjct: 25 GGTVTLTCEVP-AQPSPQIHWMKDGVPL 51
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 99
Score = 77.0 bits (190), Expect = 2e-18
Identities = 28/97 (28%), Positives = 40/97 (41%), Gaps = 6/97 (6%)
Query: 99 GRSSSQNVHISVTGAP-FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNR 157
G S S + + AP F + + + I G+ L C V G P+ ITW Q + R
Sbjct: 1 GSSGSSGMEV----APSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYAR 56
Query: 158 RQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSS 194
L I++ + D G Y C A N G+ S
Sbjct: 57 STCEAGVAELHIQDALPE-DHGTYTCLAENALGQVSC 92
Score = 68.5 bits (168), Expect = 3e-15
Identities = 23/100 (23%), Positives = 33/100 (33%), Gaps = 24/100 (24%)
Query: 8 KFIQ----QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLP 63
F + G L+C G P P I+W L+G P+ R +
Sbjct: 13 SFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTCEA----------- 61
Query: 64 LNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSS 103
L I++ + D G Y C A N G+ S
Sbjct: 62 --------GVAELHIQDALPE-DHGTYTCLAENALGQVSC 92
Score = 35.0 bits (81), Expect = 0.004
Identities = 16/50 (32%), Positives = 20/50 (40%), Gaps = 7/50 (14%)
Query: 200 SVTVPPKIAPFEFQP---DLHSGDRAGVQCLVTKGDPPLTISWLKNGLPI 246
+ V P F + G +QC V G P I+WL NG PI
Sbjct: 7 GMEVAPS---FSSVLKDCAVIEGQDFVLQCSVR-GTPVPRITWLLNGQPI 52
>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like
protein 3, nephrin- like 2, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 77.6 bits (191), Expect = 3e-18
Identities = 25/119 (21%), Positives = 42/119 (35%), Gaps = 11/119 (9%)
Query: 101 SSSQNVHISVTGAPFVRPMGNVSAIAGEPLYLGCPVAGYP-IESITWQKGVQQLPLNRRQ 159
SS + ++V G P + A+ GE + C + P + I W L
Sbjct: 2 SSGSSGTLTVNGPPIISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSG 61
Query: 160 KVF---------PNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAP 209
+ TL I N+ + + +Y CTA N G S ++ + + P
Sbjct: 62 RYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFG-SDTEIIRLKEQGSEMSGP 119
Score = 69.5 bits (170), Expect = 2e-15
Identities = 26/117 (22%), Positives = 40/117 (34%), Gaps = 12/117 (10%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTP-HISWKLDGYPLAGDRHENKNRIGEARVQQ 61
P +I Q G +KC P P I+W L G V+
Sbjct: 14 PPIISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVL------ESGTSGRYTVET 67
Query: 62 LPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRP 118
+ TL I N+ + + +Y CTA N G S ++ + + G+ P
Sbjct: 68 ISTEEGVI----STLTISNIVRADFQTIYNCTAWNSFG-SDTEIIRLKEQGSEMSGP 119
Score = 46.8 bits (111), Expect = 5e-07
Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 192 SSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISWLKNGLPILS 248
SS + ++V PP I+ + Q G++ ++C + PP I+W + S
Sbjct: 2 SSGSSGTLTVNGPPIISSTQTQH-ALHGEKGQIKCFIRSTPPPDRIAWSWKENVLES 57
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin,
actin-associated scaffold, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 110
Score = 74.7 bits (184), Expect = 2e-17
Identities = 30/112 (26%), Positives = 53/112 (47%), Gaps = 13/112 (11%)
Query: 99 GRSSSQNVHISVTGAP-FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNR 157
G S S P F++ G+++ G+ + C V+G P ++WQ + + +
Sbjct: 1 GSSGSSGF------RPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDS 54
Query: 158 RQKVF--PNG--TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPP 205
K+ NG +L+IE V D G+Y C ATN+ G++S ++ + V
Sbjct: 55 AHKMLVRENGVHSLIIEPVTSR-DAGIYTCIATNRAGQNSF-SLELVVAAKE 104
Score = 74.3 bits (183), Expect = 2e-17
Identities = 33/114 (28%), Positives = 50/114 (43%), Gaps = 21/114 (18%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
P + T+Q G + C +G PTP +SW+LDG P+ D
Sbjct: 10 PHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAH------------- 56
Query: 63 PLNRRQKVFPNG--TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP 114
+ V NG +L+IE V D G+Y C ATN+ G++S ++ + V
Sbjct: 57 ----KMLVRENGVHSLIIEPVTSR-DAGIYTCIATNRAGQNSF-SLELVVAAKE 104
Score = 32.3 bits (74), Expect = 0.042
Identities = 13/53 (24%), Positives = 19/53 (35%), Gaps = 7/53 (13%)
Query: 200 SVTVPPKIAPFEFQP---DLHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSA 249
S P F P + G + C V+ G P +SW +G P+
Sbjct: 5 SSGFRPH---FLQAPGDLTVQEGKLCRMDCKVS-GLPTPDLSWQLDGKPVRPD 53
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing,
ATP-binding, calcium, calmodulin-binding,
cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A
2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Length = 100
Score = 74.3 bits (183), Expect = 2e-17
Identities = 25/113 (22%), Positives = 44/113 (38%), Gaps = 22/113 (19%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
P++ ++ G +++ C TG PTP ++W G +
Sbjct: 6 PKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQ-------------- 51
Query: 63 PLNRRQKVFPNG---TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTG 112
R + TL+I +VQK D G+Y + N+ G S+ V+I +
Sbjct: 52 ---GRFHIENTDDLTTLIIMDVQKQ-DGGLYTLSLGNEFGSDSA-TVNIHIRS 99
Score = 72.0 bits (177), Expect = 2e-16
Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 8/96 (8%)
Query: 113 AP-FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPL--NRRQKVFPNG---T 166
P ++S G+ L + C G P +TW G +++ R + T
Sbjct: 5 PPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTT 64
Query: 167 LLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVT 202
L+I +VQK D G+Y + N+ G S+ V+I +
Sbjct: 65 LIIMDVQKQ-DGGLYTLSLGNEFGSDSA-TVNIHIR 98
Score = 36.1 bits (84), Expect = 0.001
Identities = 15/48 (31%), Positives = 19/48 (39%), Gaps = 5/48 (10%)
Query: 205 PKIAP-FEFQPD---LHSGDRAGVQCLVTKGDPPLTISWLKNGLPILS 248
P I P E P + G V C T G+P ++W G I S
Sbjct: 2 PGIPPKIEALPSDISIDEGKVLTVACAFT-GEPTPEVTWSCGGRKIHS 48
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo
sapiens}
Length = 99
Score = 74.2 bits (183), Expect = 2e-17
Identities = 18/90 (20%), Positives = 31/90 (34%), Gaps = 5/90 (5%)
Query: 110 VTGAP-FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNG--- 165
++ P V + + + + G P + W K + + + K+ +
Sbjct: 3 ISSKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGF 62
Query: 166 TLLIENVQKDHDRGVYWCTATNKQGRSSSQ 195
L I D G+Y CT N G SS
Sbjct: 63 FLEIHKTDTS-DSGLYTCTVKNSAGSVSSS 91
Score = 67.7 bits (166), Expect = 6e-15
Identities = 21/104 (20%), Positives = 28/104 (26%), Gaps = 27/104 (25%)
Query: 8 KFIQ----QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLP 63
+ T+ ATG P P W DG +
Sbjct: 8 VIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQG----------------- 50
Query: 64 LNRRQKVFPNG---TLLIENVQKDHDRGVYWCTATNKQGRSSSQ 104
+ K+ + L I D G+Y CT N G SS
Sbjct: 51 --GKYKLSEDKGGFFLEIHKTDTS-DSGLYTCTVKNSAGSVSSS 91
Score = 33.4 bits (77), Expect = 0.016
Identities = 12/51 (23%), Positives = 16/51 (31%), Gaps = 7/51 (13%)
Query: 201 VTVPPKIAPFEFQP-DLH--SGDRAGVQCLVTKGDPPLTISWLKNGLPILS 248
++ P D S A T G+P T W K+G I
Sbjct: 3 ISSKPV---IVTGLQDTTVSSDSVAKFAVKAT-GEPRPTAIWTKDGKAITQ 49
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET,
muscle protein; NMR {Caenorhabditis elegans} SCOP:
b.1.1.4 PDB: 1wiu_A
Length = 93
Score = 73.1 bits (180), Expect = 4e-17
Identities = 18/95 (18%), Positives = 28/95 (29%), Gaps = 8/95 (8%)
Query: 113 AP-FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNG---TLL 168
P + + AG L G P + TW G L V ++
Sbjct: 2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIF 61
Query: 169 IENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTV 203
+ ++ D G Y N+ G + V V
Sbjct: 62 FPSAKRA-DSGNYKLKVKNELGEDEAI---FEVIV 92
Score = 62.3 bits (152), Expect = 5e-13
Identities = 15/111 (13%), Positives = 32/111 (28%), Gaps = 24/111 (21%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
P+++ + ++ G +L+ G P P +W +
Sbjct: 3 PKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGD-------------------SGA 43
Query: 63 PLNRRQKVFPNG---TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISV 110
L V ++ + ++ D G Y N+ G + V
Sbjct: 44 ALAPELLVDAKSSTTSIFFPSAKRA-DSGNYKLKVKNELG-EDEAIFEVIV 92
Score = 33.8 bits (78), Expect = 0.009
Identities = 8/46 (17%), Positives = 15/46 (32%), Gaps = 1/46 (2%)
Query: 203 VPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISWLKNGLPILS 248
+ PKI + + +G ++ G P T +W
Sbjct: 1 LKPKILTASRKIKIKAGFTHNLEVDFI-GAPDPTATWTVGDSGAAL 45
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain,
immunoglobulin fold, alternative splicing, signal,
muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB:
1ncu_A 1tnm_A 1tnn_A
Length = 106
Score = 73.2 bits (180), Expect = 6e-17
Identities = 22/90 (24%), Positives = 36/90 (40%), Gaps = 5/90 (5%)
Query: 109 SVTGAP-FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVF---PN 164
T A + +++ GE C G P+ ++TW + Q L + R +V
Sbjct: 10 KTTLAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYK 69
Query: 165 GTLLIENVQKDHDRGVYWCTATNKQGRSSS 194
T I +VQ D G Y N +G+ +
Sbjct: 70 STFEISSVQAS-DEGNYSVVVENSEGKQEA 98
Score = 68.9 bits (169), Expect = 2e-15
Identities = 21/102 (20%), Positives = 32/102 (31%), Gaps = 19/102 (18%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPL-AGDRHENKNRIGEARVQQ 61
+++ K T+ G C G P P ++W G L RH+
Sbjct: 15 ARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKY------ 68
Query: 62 LPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSS 103
T I +VQ D G Y N +G+ +
Sbjct: 69 -----------KSTFEISSVQAS-DEGNYSVVVENSEGKQEA 98
Score = 36.9 bits (86), Expect = 8e-04
Identities = 12/58 (20%), Positives = 22/58 (37%), Gaps = 7/58 (12%)
Query: 196 NVHISVTVPPKIAPFEFQPDLHS-----GDRAGVQCLVTKGDPPLTISWLKNGLPILS 248
+ H + +A S G+ A C G+P T++WL+ G + +
Sbjct: 2 HHHHHHSSKTTLAA-RILTKPRSMTVYEGESARFSCDTD-GEPVPTVTWLRKGQVLST 57
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed
death-1 ligand 1, complex, costimulatory, immune system;
2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Length = 222
Score = 74.7 bits (183), Expect = 3e-16
Identities = 31/203 (15%), Positives = 60/203 (29%), Gaps = 17/203 (8%)
Query: 20 VSLKCIATGNPTP-----HISWKLDGYP--LAGDRHENKNRIGEARVQQLPLNRRQKVFP 72
++++C + W+++ E+ + Q+ L + Q
Sbjct: 19 MTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLG 78
Query: 73 NGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMG-NVSAIAGEPLY 131
N L I +V+ D GVY C + G + + + + V V
Sbjct: 79 NAALQITDVKLQ-DAGVYRCMISY--GGADYKRITVKVNAPYNKINQRILVVDPVTSEHE 135
Query: 132 LGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQ-----KDHDRGVYWCTAT 186
L C GYP + W Q+ + + NV +++CT
Sbjct: 136 LTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINTTTNEIFYCTFR 195
Query: 187 NKQGRSSSQNVHISVTVPPKIAP 209
+ + + P P
Sbjct: 196 RLDP-EENHTAELVIPELPLAHP 217
Score = 57.3 bits (138), Expect = 3e-10
Identities = 24/167 (14%), Positives = 43/167 (25%), Gaps = 35/167 (20%)
Query: 109 SVTGAPFVRPMGNVSAIAGEPLYLGCPVAGYPIES-----ITWQKGVQQLPLNRRQKVFP 163
+VT P G + + C + W+ + + +
Sbjct: 3 TVTV-----PKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDL 57
Query: 164 ---------------------NGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVT 202
N L I +V+ D GVY C + G + + + + V
Sbjct: 58 KVQHSSYRQRARLLKDQLSLGNAALQITDVKLQ-DAGVYRCMISY--GGADYKRITVKVN 114
Query: 203 VPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSA 249
P + C G P + W + +LS
Sbjct: 115 APYNKINQRILVVDPVTSEHELTCQAE-GYPKAEVIWTSSDHQVLSG 160
Score = 49.2 bits (117), Expect = 2e-07
Identities = 17/110 (15%), Positives = 31/110 (28%), Gaps = 17/110 (15%)
Query: 10 IQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQK 69
I L C A G P + W + +++ + R +K
Sbjct: 124 ILVVDPVTSEHELTCQAEGYPKAEVIWT-----------SSDHQVLSGKTTTTNSKREEK 172
Query: 70 VFP-NGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRP 118
+F TL I +++CT + + + P P
Sbjct: 173 LFNVTSTLRI----NTTTNEIFYCTFRRLDP-EENHTAELVIPELPLAHP 217
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein,
cell membrane, cytoplasm, cytoskeleton, disease
mutation, immunoglobulin domain; NMR {Homo sapiens}
Length = 100
Score = 71.2 bits (175), Expect = 3e-16
Identities = 24/103 (23%), Positives = 39/103 (37%), Gaps = 24/103 (23%)
Query: 8 KFIQ----QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLP 63
+FIQ ++ G + +G P P +SW L+G + D
Sbjct: 7 RFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDL--------------- 51
Query: 64 LNRRQKVFPNG--TLLIENVQKDHDRGVYWCTATNKQGRSSSQ 104
+ V G +L+ E V+ D G Y C A N+ G ++
Sbjct: 52 --HKMIVSEKGLHSLIFEVVRAS-DAGAYACVAKNRAGEATFT 91
Score = 70.4 bits (173), Expect = 6e-16
Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 5/85 (5%)
Query: 115 FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNG----TLLIE 170
F++ N+S G + V+G P ++W + + + K+ + +L+ E
Sbjct: 8 FIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFE 67
Query: 171 NVQKDHDRGVYWCTATNKQGRSSSQ 195
V+ D G Y C A N+ G ++
Sbjct: 68 VVRAS-DAGAYACVAKNRAGEATFT 91
Score = 32.7 bits (75), Expect = 0.027
Identities = 9/30 (30%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 219 GDRAGVQCLVTKGDPPLTISWLKNGLPILS 248
G + V+ G P +SW NG + S
Sbjct: 20 GRFCRMDFKVS-GLPAPDVSWYLNGRTVQS 48
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural
genomics, IG-fold I-SET, RGD motif, homophilic adhesion,
arterial smooth muscle cells; 0.96A {Homo sapiens}
Length = 99
Score = 71.2 bits (175), Expect = 4e-16
Identities = 25/113 (22%), Positives = 38/113 (33%), Gaps = 23/113 (20%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
P + Q+++ G V + G P P +SW + P+ D+
Sbjct: 6 PTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQ--------------- 50
Query: 63 PLNRRQKVFPNG---TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTG 112
RR G L I ++ D G Y C A N+ G + V G
Sbjct: 51 ---RRFAEEAEGGLCRLRILAAERG-DAGFYTCKAVNEYGARQC-EARLEVRG 98
Score = 69.2 bits (170), Expect = 2e-15
Identities = 21/87 (24%), Positives = 34/87 (39%), Gaps = 6/87 (6%)
Query: 113 AP-FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLN-RRQKVFPNG---TL 167
P F + + S G+ + + V G P ++W + Q + + RR G L
Sbjct: 5 PPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRL 64
Query: 168 LIENVQKDHDRGVYWCTATNKQGRSSS 194
I ++ D G Y C A N+ G
Sbjct: 65 RILAAERG-DAGFYTCKAVNEYGARQC 90
Score = 33.0 bits (76), Expect = 0.017
Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 219 GDRAGVQCLVTKGDPPLTISWLKNGLPI 246
G + V G+P +SWL+N P+
Sbjct: 20 GQDVIMSIRVQ-GEPKPVVSWLRNRQPV 46
>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK
receptor, receptor tyrosine kinase, 3D-domain swapping,
transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB:
1hcf_X
Length = 103
Score = 70.9 bits (174), Expect = 4e-16
Identities = 18/100 (18%), Positives = 29/100 (29%), Gaps = 15/100 (15%)
Query: 16 PGPPVSLKCIATGNPTPHISWKLDGYPL-AGDRHENKNRIGEARVQQLPLNRRQKVFPNG 74
+ GNP P + W +G L K + +G
Sbjct: 15 SDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEY------------HG 62
Query: 75 TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP 114
L ++N + G Y A N+ G + + G P
Sbjct: 63 CLQLDNPTHM-NNGDYTLIAKNEYG-KDEKQISAHFMGWP 100
Score = 69.0 bits (169), Expect = 2e-15
Identities = 18/106 (16%), Positives = 34/106 (32%), Gaps = 12/106 (11%)
Query: 110 VTGAPFVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFP------ 163
V AP + + + + + V G P ++ W L ++
Sbjct: 1 VHFAPTITFLESP--TSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHT 58
Query: 164 --NGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKI 207
+G L ++N + G Y A N+ G + + P I
Sbjct: 59 EYHGCLQLDNPTHM-NNGDYTLIAKNEYG-KDEKQISAHFMGWPGI 102
Score = 41.3 bits (97), Expect = 3e-05
Identities = 11/46 (23%), Positives = 15/46 (32%), Gaps = 4/46 (8%)
Query: 201 VTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISWLKNGLPI 246
V P I E S + V G+P + W NG +
Sbjct: 1 VHFAPTITFLESPT---SDHHWCIPFTVK-GNPKPALQWFYNGAIL 42
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin
domain, fibronectin type III repeat, CE adhesion; 1.80A
{Homo sapiens}
Length = 215
Score = 73.7 bits (181), Expect = 5e-16
Identities = 27/123 (21%), Positives = 43/123 (34%), Gaps = 14/123 (11%)
Query: 88 GVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQ 147
Y ++ R S AP ++ V G + + C V YP +I+W
Sbjct: 1 ATYAAASSALVPR-------GSHMYAPKLQGPVAVYTWEGNQVNITCEVFAYPSATISWF 53
Query: 148 KGVQQLPLNRRQKVF-----PNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVT 202
+ Q LP + + L + ++ D G Y CTA N+ G S +
Sbjct: 54 RDGQLLPSSNYSNIKIYNTPSASYLEVTPDSEN-DFGNYNCTAVNRIG-QESLEFILVQA 111
Query: 203 VPP 205
P
Sbjct: 112 DTP 114
Score = 71.8 bits (176), Expect = 2e-15
Identities = 38/210 (18%), Positives = 57/210 (27%), Gaps = 39/210 (18%)
Query: 12 QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVF 71
G V++ C P+ ISW DG L + N
Sbjct: 28 VYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTP-------------- 73
Query: 72 PNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGNVSAIA----- 126
L + ++ D G Y CTA N+ G S + P + V +
Sbjct: 74 SASYLEVTPDSEN-DFGNYNCTAVNRIG-QESLEFILVQADTPSSPSIDQVEPYSSTAQV 131
Query: 127 --GEPLYLG-CPVAGYPIE-----SITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDR 178
EP G P+ Y E W + G + I ++ +
Sbjct: 132 QFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAK-----EASMEGIVTIVGLKPET-- 184
Query: 179 GVY--WCTATNKQGRSSSQNVHISVTVPPK 206
Y A N +G T P +
Sbjct: 185 -TYAVRLAALNGKGLGEISAASEFKTQPVQ 213
>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 70.5 bits (173), Expect = 5e-16
Identities = 18/89 (20%), Positives = 36/89 (40%), Gaps = 4/89 (4%)
Query: 121 NVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGV 180
+ G+ L L C + SI W + QL + R ++ + +++ D G+
Sbjct: 12 SFLVHPGDLLQLRCRLRDDVQ-SINWLRDGVQLAESNRTRI-TGEEVEVQDSVPA-DSGL 68
Query: 181 YWCTATNKQGRSSSQNVHISVTVPPKIAP 209
Y C ++ G S + ++V+ P
Sbjct: 69 YACVTSSPSG-SDTTYFSVNVSDALPSGP 96
Score = 69.0 bits (169), Expect = 2e-15
Identities = 20/107 (18%), Positives = 39/107 (36%), Gaps = 23/107 (21%)
Query: 12 QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVF 71
+ PG + L+C + I+W DG QL + R ++
Sbjct: 13 FLVHPGDLLQLRCRLRDDV-QSINWLRDG-------------------VQLAESNRTRI- 51
Query: 72 PNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRP 118
+ +++ D G+Y C ++ G S + ++V+ A P
Sbjct: 52 TGEEVEVQDSVPA-DSGLYACVTSSPSG-SDTTYFSVNVSDALPSGP 96
Score = 34.3 bits (79), Expect = 0.007
Identities = 9/42 (21%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
Query: 210 FEFQPD---LHSGDRAGVQCLVTKGDPPLTISWLKNGLPILS 248
+ + +H GD ++C + D +I+WL++G+ +
Sbjct: 6 SGVEVESFLVHPGDLLQLRCRLR-DDVQ-SINWLRDGVQLAE 45
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo
sapiens}
Length = 103
Score = 70.4 bits (173), Expect = 7e-16
Identities = 19/91 (20%), Positives = 30/91 (32%), Gaps = 5/91 (5%)
Query: 108 ISVTGAP-FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNG- 165
++ AP M + G+ V P + W +L + +
Sbjct: 3 FTLDHAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSG 62
Query: 166 --TLLIENVQKDHDRGVYWCTATNKQGRSSS 194
TL I + D D G Y TN +G +S
Sbjct: 63 VLTLEILDCHTD-DSGTYRAVCTNYKGEASD 92
Score = 65.8 bits (161), Expect = 3e-14
Identities = 23/114 (20%), Positives = 35/114 (30%), Gaps = 20/114 (17%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPL-AGDRHENKNRIGEARVQQ 61
P++ + + G PT + W +G L + N G
Sbjct: 9 PRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVL---- 64
Query: 62 LPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPF 115
TL I + D D G Y TN +G +S + VTG +
Sbjct: 65 -------------TLEILDCHTD-DSGTYRAVCTNYKGEASD-YATLDVTGGDY 103
Score = 34.6 bits (80), Expect = 0.006
Identities = 8/51 (15%), Positives = 15/51 (29%), Gaps = 7/51 (13%)
Query: 199 ISVTVPPKIAPFEFQPDLHS---GDRAGVQCLVTKGDPPLTISWLKNGLPI 246
++ P+ + H G V P + W NG+ +
Sbjct: 3 FTLDHAPR---ITLRMRSHRVPCGQNTRFILNVQ-SKPTAEVKWYHNGVEL 49
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle
isozymes; IG fold, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: b.1.1.4
Length = 114
Score = 70.4 bits (173), Expect = 1e-15
Identities = 24/97 (24%), Positives = 40/97 (41%), Gaps = 6/97 (6%)
Query: 113 AP-FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNG---TLL 168
P ++ + AGE + L V G + TW K +Q+ + KV + L
Sbjct: 7 GPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLT 66
Query: 169 IENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPP 205
I +++ G Y NK G +Q V+++V P
Sbjct: 67 ILAARQE-HCGCYTLLVENKLGSRQAQ-VNLTVVDKP 101
Score = 59.3 bits (144), Expect = 1e-11
Identities = 21/112 (18%), Positives = 35/112 (31%), Gaps = 18/112 (16%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
PQ+I Q ++ G V L TG +W + ++
Sbjct: 8 PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESE----------HMKVE 57
Query: 63 PLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP 114
L I +++ G Y NK G +Q V+++V P
Sbjct: 58 NSEN------GSKLTILAARQE-HCGCYTLLVENKLGSRQAQ-VNLTVVDKP 101
Score = 33.8 bits (78), Expect = 0.015
Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 202 TVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISWLKNGLPILS 248
+ P+I F + +G+ + VT G P+T +W+K I
Sbjct: 5 SSGPQIIQFPEDQKVRAGESVELFGKVT-GTQPITCTWMKFRKQIQE 50
>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding,
disease MU ectodermal dysplasia, glycoprotein,
heparin-binding, immuno domain, kinase; 1.96A {Homo
sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A
Length = 100
Score = 68.6 bits (168), Expect = 2e-15
Identities = 24/99 (24%), Positives = 41/99 (41%), Gaps = 17/99 (17%)
Query: 12 QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVF 71
+ V +C A GNP P + W +G + +RIG +V+
Sbjct: 18 HAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQE-----HRIGGYKVRN---------- 62
Query: 72 PNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISV 110
+ +L++E+V D+G Y C N+ G + H+ V
Sbjct: 63 QHWSLIMESVVPS-DKGNYTCVVENEYGSINH-TYHLDV 99
Score = 63.2 bits (154), Expect = 3e-13
Identities = 21/98 (21%), Positives = 39/98 (39%), Gaps = 11/98 (11%)
Query: 113 AP-FVRPMG----NVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVF----P 163
AP + + A + CP G P+ ++ W K ++ R +
Sbjct: 4 APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQ 63
Query: 164 NGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISV 201
+ +L++E+V D+G Y C N+ G + H+ V
Sbjct: 64 HWSLIMESVVPS-DKGNYTCVVENEYGSINH-TYHLDV 99
Score = 36.7 bits (85), Expect = 0.001
Identities = 13/55 (23%), Positives = 21/55 (38%), Gaps = 5/55 (9%)
Query: 204 PPK-IAPFEFQPDLH---SGDRAGVQCLVTKGDPPLTISWLKNGLPILSAMGVGR 254
P + + LH + + +C G+P T+ WLKNG +G
Sbjct: 4 APYWTNTEKMEKRLHAVPAANTVKFRCPAG-GNPMPTMRWLKNGKEFKQEHRIGG 57
>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B
Length = 171
Score = 70.0 bits (171), Expect = 5e-15
Identities = 28/188 (14%), Positives = 49/188 (26%), Gaps = 27/188 (14%)
Query: 17 GPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTL 76
V+ + P + WK +A + + NR +G+L
Sbjct: 10 YGNVTFHV-PSNVPLKEVLWKKQKDKVAELENSEFRAFSSFK------NRVYLDTVSGSL 62
Query: 77 LIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGNVSAIAGEPLYLGCPV 136
I N+ D Y + N + + V + L C V
Sbjct: 63 TIYNLTSS-DEDEYEMESPNITD---TMKFFLYV----LEMVSKPMIYWECSNATLTCEV 114
Query: 137 AGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQN 196
+ +G + L + + R + C A N R S ++
Sbjct: 115 LEGTDVELKLYQGKEHLR--------SLRQKTMSYQWTN-LRAPFKCKAVN---RVSQES 162
Query: 197 VHISVTVP 204
V P
Sbjct: 163 EMEVVNCP 170
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative
splicing, cell adhesion, cell membrane, glycoprotein,
HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3uro_R
3epc_R* 3epd_R* 3epf_R*
Length = 221
Score = 70.5 bits (172), Expect = 7e-15
Identities = 37/212 (17%), Positives = 62/212 (29%), Gaps = 16/212 (7%)
Query: 11 QQTLQPGPPVSLKCIATGNPTP-----HISWKLDG--YPLAGDRHENKNRIGEARVQQLP 63
Q G V+L C ++W G +A E++ +
Sbjct: 8 QVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFV 67
Query: 64 LNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVR-PMGNV 122
R + +L + ++ + D G Y C S S ++ + V P + V
Sbjct: 68 AARLGAELRDASLRMFGLRVE-DEGSYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKV 126
Query: 123 SAIAGEPLYLGCPVAG-YPIESITWQKGVQQLPLNRRQKVFPNGT-----LLIENVQKDH 176
C G P ITW + +P + F +GT L I
Sbjct: 127 QLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPQTSQVPGFLSGTVTVTSLWILVPSSQV 186
Query: 177 DRGVYWCTATNKQGRSS-SQNVHISVTVPPKI 207
D C ++ V ++V P
Sbjct: 187 DGKQVTCKVEHESFEKPQLLTVSLTVYYPHHH 218
Score = 63.2 bits (153), Expect = 3e-12
Identities = 27/159 (16%), Positives = 51/159 (32%), Gaps = 27/159 (16%)
Query: 116 VRPMGNVSAIAGEPLYLGCPVAGYP-----IESITWQK--------------GVQQLPLN 156
V+ V G+ + L C + + +TW + G
Sbjct: 3 VQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESK 62
Query: 157 RRQKVFP-------NGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAP 209
R + V + +L + ++ + D G Y C S S ++ + V P+
Sbjct: 63 RLEFVAARLGAELRDASLRMFGLRVE-DEGSYTCLFVTFPQGSRSVDIWLRVLAKPQNTA 121
Query: 210 FEFQPDLHSGDRAGVQCLVTKGDPPLTISWLKNGLPILS 248
+ L +C+ T G PP I+W + +
Sbjct: 122 EVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPQ 160
>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3;
structural genomics, joint center for struct genomics,
JCSG; HET: MLY MSE; 1.70A {Mus musculus}
Length = 112
Score = 67.8 bits (165), Expect = 7e-15
Identities = 23/110 (20%), Positives = 37/110 (33%), Gaps = 11/110 (10%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTP--HISWKLDGYPLAGDRHENKNRIGEARVQ 60
PQ+ + Q+ G VS C A + +W D L EN +
Sbjct: 11 PQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHL------ 64
Query: 61 QLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISV 110
+ + L + NV+ G Y C +N G S S +++
Sbjct: 65 --RAQGGELMEYTTILRLRNVEFT-SEGXYQCVISNHFGSSYSVXAXLTI 111
Score = 55.1 bits (132), Expect = 4e-10
Identities = 18/94 (19%), Positives = 29/94 (30%), Gaps = 14/94 (14%)
Query: 121 NVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPL-------------NRRQKVFPNGTL 167
SAI G + C A +T+ L + + L
Sbjct: 19 TQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGELMEYTTIL 78
Query: 168 LIENVQKDHDRGVYWCTATNKQGRSSSQNVHISV 201
+ NV+ G Y C +N G S S +++
Sbjct: 79 RLRNVEFT-SEGXYQCVISNHFGSSYSVXAXLTI 111
Score = 26.6 bits (58), Expect = 4.5
Identities = 7/32 (21%), Positives = 11/32 (34%), Gaps = 1/32 (3%)
Query: 219 GDRAGVQCLVT-KGDPPLTISWLKNGLPILSA 249
G C D P+T +W + + A
Sbjct: 25 GSDVSFTCSAASSSDSPMTFAWXXDNEALQDA 56
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain,
beta-sandwhich, I-SET, structural protein; 2.10A {Homo
sapiens} SCOP: b.1.1.4
Length = 99
Score = 67.3 bits (165), Expect = 8e-15
Identities = 18/88 (20%), Positives = 30/88 (34%), Gaps = 6/88 (6%)
Query: 113 AP-FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNG----TL 167
AP + + + G + V G P W K ++ + R + L
Sbjct: 5 APKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCEL 64
Query: 168 LIENVQKDHDRGVYWCTATNKQGRSSSQ 195
+I +V + D A N G +SS
Sbjct: 65 VIRDVTGE-DSASIMVKAINIAGETSSH 91
Score = 63.8 bits (156), Expect = 2e-13
Identities = 20/104 (19%), Positives = 30/104 (28%), Gaps = 26/104 (25%)
Query: 8 KFIQ----QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLP 63
K + QT+ G + G P P W +G +
Sbjct: 7 KIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSD---------------- 50
Query: 64 LNRRQKVFPNG---TLLIENVQKDHDRGVYWCTATNKQGRSSSQ 104
R +P L+I +V + D A N G +SS
Sbjct: 51 --RIYWYWPEDNVCELVIRDVTGE-DSASIMVKAINIAGETSSH 91
Score = 33.0 bits (76), Expect = 0.019
Identities = 13/47 (27%), Positives = 17/47 (36%), Gaps = 5/47 (10%)
Query: 204 PPKIAP-FEFQPDLHS---GDRAGVQCLVTKGDPPLTISWLKNGLPI 246
P AP + + G A + V G P W KNG+ I
Sbjct: 1 PSMEAPKIFERIQSQTVGQGSDAHFRVRVV-GKPDPECEWYKNGVKI 46
>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core
protein; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4
Length = 98
Score = 67.5 bits (165), Expect = 8e-15
Identities = 24/107 (22%), Positives = 37/107 (34%), Gaps = 26/107 (24%)
Query: 6 IYKFIQQTLQPGPPVSLKCIA-TGNPTPHISW-KLDGYPLAGDRHENKNRIGEARVQQLP 63
+ + Q+++PG V+ C A + +P + W +L L
Sbjct: 14 VEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRA---------------- 57
Query: 64 LNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISV 110
+ NG L I NVQ D G Y CT +N + V
Sbjct: 58 ------MDFNGILTIRNVQPS-DAGTYVCTGSNMFA-MDQGTATLHV 96
Score = 66.4 bits (162), Expect = 2e-14
Identities = 22/89 (24%), Positives = 32/89 (35%), Gaps = 5/89 (5%)
Query: 116 VRPMGNVSAIAGEPLYLGCPV-AGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQK 174
V + S G + C + P ++ W + +R + NG L I NVQ
Sbjct: 14 VEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRA--MDFNGILTIRNVQP 71
Query: 175 DHDRGVYWCTATNKQGRSSSQNVHISVTV 203
D G Y CT +N + V V
Sbjct: 72 S-DAGTYVCTGSNMFA-MDQGTATLHVQV 98
Score = 33.2 bits (76), Expect = 0.015
Identities = 8/47 (17%), Positives = 14/47 (29%), Gaps = 1/47 (2%)
Query: 204 PPKIAPFEFQP-DLHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSA 249
P + E + + G C P T+ W + L +
Sbjct: 9 PIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPS 55
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C,
C-protein, skeletal muscle fast-isoform, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 67.8 bits (166), Expect = 1e-14
Identities = 22/112 (19%), Positives = 33/112 (29%), Gaps = 9/112 (8%)
Query: 101 SSSQNVHISVTGAP--FVRPMGNVSAI---AGEPLYLGCPVAGYPIESITWQKGVQQLPL 155
+ +Q V I P P GE L L P G P + W KG L
Sbjct: 8 TLAQPVTIREIAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLDT 67
Query: 156 NRRQKVFPNG--TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPP 205
+R + + + D G Y + + + + I V
Sbjct: 68 SRVHVRTSDFDTVFFVRQAARS-DSGEYELSVQIENM-KDTATIRIRVVEKA 117
Score = 67.4 bits (165), Expect = 1e-14
Identities = 15/102 (14%), Positives = 27/102 (26%), Gaps = 19/102 (18%)
Query: 13 TLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFP 72
+ G ++L G P P + W G PL R +
Sbjct: 35 IRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLDTSRVHVRTSDF----------------- 77
Query: 73 NGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP 114
+ + + D G Y + + + + I V
Sbjct: 78 DTVFFVRQAARS-DSGEYELSVQIENM-KDTATIRIRVVEKA 117
Score = 40.8 bits (96), Expect = 5e-05
Identities = 14/59 (23%), Positives = 22/59 (37%), Gaps = 5/59 (8%)
Query: 192 SSSQNVHI-SVTVPPKIAPFEFQPD---LHSGDRAGVQCLVTKGDPPLTISWLKNGLPI 246
+ +Q V I + PPKI G++ + G P + W K G P+
Sbjct: 8 TLAQPVTIREIAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQ-GKPRPQVVWTKGGAPL 65
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND,
structural protein, muscle, antibo; 1.69A {Homo sapiens}
Length = 97
Score = 67.0 bits (164), Expect = 1e-14
Identities = 21/87 (24%), Positives = 35/87 (40%), Gaps = 5/87 (5%)
Query: 112 GAPFVRPMGNVSAIAGEPLYLGCPVAGYP-IESITWQKGVQQLPLNRRQKVFPNG---TL 167
GA + + G + C + Y +TW GV+QL + + ++ L
Sbjct: 1 GAMVSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAIL 60
Query: 168 LIENVQKDHDRGVYWCTATNKQGRSSS 194
++++ K D G Y C N G SS
Sbjct: 61 YVKDITKL-DDGTYRCKVVNDYGEDSS 86
Score = 58.1 bits (141), Expect = 2e-11
Identities = 20/105 (19%), Positives = 31/105 (29%), Gaps = 21/105 (20%)
Query: 12 QTLQPGPPVSLKCIATGNPTP-HISWKLDGYPL-AGDRHENKNRIGEARVQQLPLNRRQK 69
+ G V C ++W L +++E G A
Sbjct: 11 AVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVA------------ 58
Query: 70 VFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP 114
L ++++ K D G Y C N G SS + V G
Sbjct: 59 -----ILYVKDITKL-DDGTYRCKVVNDYGEDSSY-AELFVKGVR 96
Score = 35.0 bits (81), Expect = 0.004
Identities = 4/28 (14%), Positives = 8/28 (28%)
Query: 219 GDRAGVQCLVTKGDPPLTISWLKNGLPI 246
G C + D ++W +
Sbjct: 16 GGHVKYVCKIENYDQSTQVTWYFGVRQL 43
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase,
heparin-binding, nucleotide-binding, immunoglobulin
domain, alternatice splicing; NMR {Mus musculus}
Length = 95
Score = 66.7 bits (163), Expect = 1e-14
Identities = 17/88 (19%), Positives = 37/88 (42%), Gaps = 4/88 (4%)
Query: 115 FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQK 174
+ ++ G+ L L C + +SI W + QL + R ++ + + +
Sbjct: 12 VPVEVESLLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLVESNRTRI-TGEEVEVRDSIP 69
Query: 175 DHDRGVYWCTATNKQGRSSSQNVHISVT 202
D G+Y C ++ G S + ++V+
Sbjct: 70 A-DSGLYACVTSSPSG-SDTTYFSVNVS 95
Score = 66.7 bits (163), Expect = 1e-14
Identities = 17/100 (17%), Positives = 34/100 (34%), Gaps = 23/100 (23%)
Query: 12 QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVF 71
+ PG + L+C I+W DG L + R ++
Sbjct: 19 LLVHPGDLLQLRCRLRD-DVQSINWLRDGVQ-------------------LVESNRTRI- 57
Query: 72 PNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVT 111
+ + + D G+Y C ++ G S + ++V+
Sbjct: 58 TGEEVEVRDSIPA-DSGLYACVTSSPSG-SDTTYFSVNVS 95
Score = 35.5 bits (82), Expect = 0.002
Identities = 12/52 (23%), Positives = 27/52 (51%), Gaps = 7/52 (13%)
Query: 202 TVPPKIAPFEFQPDLHS-----GDRAGVQCLVTKGDPPLTISWLKNGLPILS 248
T+P + P+ ++ S GD ++C + D +I+WL++G+ ++
Sbjct: 2 TLPEQAQPWGVPVEVESLLVHPGDLLQLRCRLR--DDVQSINWLRDGVQLVE 51
>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF
receptor, cancer, immune system-transfer complex; HET:
NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X
Length = 122
Score = 67.5 bits (164), Expect = 1e-14
Identities = 24/107 (22%), Positives = 42/107 (39%), Gaps = 8/107 (7%)
Query: 11 QQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKV 70
L G + L C A I + + YP +H++K + Q + +
Sbjct: 17 GIELSVGEKLVLNCTARTELNVGIDFNWE-YP--SSKHQHKKLVNRDLKTQ---SGSEMK 70
Query: 71 FPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVR 117
TL I+ V + D+G+Y C A++ + + + V PFV
Sbjct: 71 KFLSTLTIDGVTRS-DQGLYTCAASSGLM-TKKNSTFVRVHEKPFVA 115
Score = 63.6 bits (154), Expect = 3e-13
Identities = 19/106 (17%), Positives = 33/106 (31%), Gaps = 15/106 (14%)
Query: 116 VRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNR-------------RQKVF 162
+ P + GE L L C I + +
Sbjct: 12 LSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKK 71
Query: 163 PNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIA 208
TL I+ V + D+G+Y C A++ + + + V P +A
Sbjct: 72 FLSTLTIDGVTRS-DQGLYTCAASSGLM-TKKNSTFVRVHEKPFVA 115
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily.,
cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Length = 231
Score = 69.5 bits (169), Expect = 2e-14
Identities = 38/217 (17%), Positives = 62/217 (28%), Gaps = 32/217 (14%)
Query: 16 PGPPVSLKCIATGNPTPH-ISWKLDGYPLAGDR----HENKNRIGEARVQQLPLNRRQKV 70
G V L C TG + + W L A R + + + ++
Sbjct: 14 RGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQL 73
Query: 71 FPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP-----FVRPMGNVSAI 125
G L++ Q D Y C ++ ++V P
Sbjct: 74 DSQGRLVLAEAQVG-DERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTLSVME 132
Query: 126 AGEPLYLGCPVA-GYPIESITWQKGVQQLP----------LNRRQKVFPNGTL-----LI 169
C G P ITW + Q+L + R +G L L
Sbjct: 133 DSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSLTSTLY 192
Query: 170 ENVQKDHDRGVYWCTAT-----NKQGRSSSQNVHISV 201
++KD + C A + GR S H+++
Sbjct: 193 LRLRKDDRDASFHCAAHYSLPEGRHGRLDSPTFHLTL 229
Score = 69.1 bits (168), Expect = 3e-14
Identities = 25/165 (15%), Positives = 48/165 (29%), Gaps = 29/165 (17%)
Query: 121 NVSAIAGEPLYLGCPVAGYP-IESITW---QKGVQQLPL--------------------N 156
V + G+ + L C G + W + + L +
Sbjct: 9 LVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRS 68
Query: 157 RRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDL 216
++ G L++ Q D Y C ++ ++V P+
Sbjct: 69 PPYQLDSQGRLVLAEAQVG-DERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGT 127
Query: 217 HSGDRAGVQ----CLVTKGDPPLTISWLKNGLPILSAMGVGRKGN 257
S Q C G+P I+W +NG + + + +G
Sbjct: 128 LSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGY 172
Score = 48.3 bits (114), Expect = 6e-07
Identities = 20/104 (19%), Positives = 36/104 (34%), Gaps = 10/104 (9%)
Query: 13 TLQPGPPVSLKCIAT-GNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVF 71
++ C + GNP P I+W +G L N E + + +
Sbjct: 130 VMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMN----PEGYMTSRTVREASGLL 185
Query: 72 PNGTLLIENVQKDHDRGVYWCTAT-----NKQGRSSSQNVHISV 110
+ L ++KD + C A + GR S H+++
Sbjct: 186 SLTSTLYLRLRKDDRDASFHCAAHYSLPEGRHGRLDSPTFHLTL 229
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 110
Score = 66.6 bits (163), Expect = 2e-14
Identities = 27/101 (26%), Positives = 35/101 (34%), Gaps = 8/101 (7%)
Query: 111 TGAP-FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNG---- 165
+GAP F + + G P+ C VAG P I W K +Q+
Sbjct: 6 SGAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGT 65
Query: 166 -TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPP 205
+L D D G Y A N QGR S + V
Sbjct: 66 CSLHTTASTLD-DDGNYTIMAANPQGRISC-TGRLMVQAVN 104
Score = 63.5 bits (155), Expect = 3e-13
Identities = 27/122 (22%), Positives = 36/122 (29%), Gaps = 24/122 (19%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
P K + G PV+ C GNP P I W DG ++
Sbjct: 9 PFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPK---------------- 52
Query: 63 PLNRRQKVFPNG----TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRP 118
+ + + +L D D G Y A N QGR S + V
Sbjct: 53 --SDHYTIQRDLDGTCSLHTTASTLD-DDGNYTIMAANPQGRISC-TGRLMVQAVNSGPS 108
Query: 119 MG 120
G
Sbjct: 109 SG 110
Score = 31.6 bits (72), Expect = 0.077
Identities = 10/30 (33%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 219 GDRAGVQCLVTKGDPPLTISWLKNGLPILS 248
G C V G+P I W K+G I
Sbjct: 23 GMPVTFTCRVA-GNPKPKIYWFKDGKQISP 51
>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system;
3.00A {Homo sapiens}
Length = 193
Score = 67.7 bits (165), Expect = 4e-14
Identities = 28/159 (17%), Positives = 48/159 (30%), Gaps = 26/159 (16%)
Query: 110 VTGAPFVRPMGNVSAIAGEPLYLGCPV-AGYPIESITWQKG------------------V 150
++ P + V+ I GE + L AG + ITW V
Sbjct: 1 MSLTPLM-----VNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHV 55
Query: 151 QQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIA-P 209
+R + +L + N++ + D G Y + K S + I
Sbjct: 56 TNPKQGKRLNFTQSYSLQLSNLKME-DTGSYRAQISTKTSAKLSSYTLRILRQLRNIQVT 114
Query: 210 FEFQPDLHSGDRAGVQCLVTKGDPPLTISWLKNGLPILS 248
Q + + C V D ++ W G + S
Sbjct: 115 NHSQLFQNMTCELHLTCSVEDADDNVSFRWEALGNTLSS 153
Score = 67.7 bits (165), Expect = 6e-14
Identities = 33/189 (17%), Positives = 55/189 (29%), Gaps = 15/189 (7%)
Query: 17 GPPVSLKC-IATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGT 75
G V+L G I+W + LA ++ + E V +R + +
Sbjct: 13 GESVTLPLEFPAGEKVNFITWLFNETSLA-FIVPHETKSPEIHVTNPKQGKRLNFTQSYS 71
Query: 76 LLIENVQKDHDRGVYWCTATNKQGRSSSQNV--HISVTGAPFVRPMGNVSAIAGEPLYLG 133
L + N++ + D G Y + K S + V + L+L
Sbjct: 72 LQLSNLKME-DTGSYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHSQLFQNMTCELHLT 130
Query: 134 CPVA-GYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRS 192
C V S W+ L L + + Y C A N +
Sbjct: 131 CSVEDADDNVSFRWEALGNTLS--------SQPNLTVSWDPRISSEQDYTCIAENAVS-N 181
Query: 193 SSQNVHISV 201
S +V
Sbjct: 182 LSFSVSAQK 190
>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG
superfamily, rossmann fold, metal mediated protein
interf immune system; HET: NAG; 3.30A {Homo sapiens}
SCOP: b.1.1.3 b.1.1.4
Length = 291
Score = 68.7 bits (167), Expect = 7e-14
Identities = 34/242 (14%), Positives = 66/242 (27%), Gaps = 39/242 (16%)
Query: 11 QQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKV 70
+ L G V + C + + + + PL +++ +
Sbjct: 8 KVILPRGGSVLVTCSTSCDQPKLLGIET------------------------PLPKKELL 43
Query: 71 FPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP--FVRPMGNVSAIAGE 128
P + + + C + S+ ++V P G+
Sbjct: 44 LPGNNRKVYELSNVQEDSQPMCYSNC-PDGQSTAKTFLTVYWTPERVELAPLPSWQPVGK 102
Query: 129 PLYLGCPVAG-YPIE--SITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTA 185
L L C V G P ++ +G ++L T + V++DH + C
Sbjct: 103 NLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPAEVTTTV-LVRRDHHGANFSCRT 161
Query: 186 TNKQG-------RSSSQNVHISVTVPPKIAPFEFQPD-LHSGDRAGVQCLVTKGDPPLTI 237
++S + V P P P L + V C + P
Sbjct: 162 ELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEA 221
Query: 238 SW 239
Sbjct: 222 QV 223
Score = 57.2 bits (137), Expect = 7e-10
Identities = 19/126 (15%), Positives = 41/126 (32%), Gaps = 9/126 (7%)
Query: 121 NVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGV 180
V G + + C + + + + PL +++ + P + + +
Sbjct: 8 KVILPRGGSVLVTCSTSCDQPKLLGIET-----PLPKKELLLPGNNRKVYELSNVQEDSQ 62
Query: 181 YWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHS-GDRAGVQCLVTKGDPP--LTI 237
C + S+ ++V P+ P G ++C V G P LT+
Sbjct: 63 PMCYSNC-PDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTV 121
Query: 238 SWLKNG 243
L+
Sbjct: 122 VLLRGE 127
>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor
tyrosine kinase, 3D-domain swapping, transferase; 1.90A
{Homo sapiens} SCOP: b.1.1.4
Length = 118
Score = 65.2 bits (159), Expect = 9e-14
Identities = 19/96 (19%), Positives = 32/96 (33%), Gaps = 14/96 (14%)
Query: 20 VSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIE 79
++ + GNP P + W +G PL + + E + G LL
Sbjct: 23 HCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEIS------------EGCLLFN 70
Query: 80 NVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPF 115
+ G Y A N G ++ ++ PF
Sbjct: 71 KPTHY-NNGNYTLIAKNPLGTANQ-TINGHFLKEPF 104
Score = 62.1 bits (151), Expect = 1e-12
Identities = 20/114 (17%), Positives = 33/114 (28%), Gaps = 13/114 (11%)
Query: 106 VHISVTGAP-FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKV--- 161
V ++V P V + + V G P ++ W Q L ++ V
Sbjct: 1 VALTVYYPPRVVSLEEPELRLEHC---IEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYY 57
Query: 162 ----FPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFE 211
G LL + G Y A N G ++ ++ P
Sbjct: 58 QEGEISEGCLLFNKPTHY-NNGNYTLIAKNPLGTANQ-TINGHFLKEPFPVDEV 109
Score = 41.3 bits (97), Expect = 4e-05
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
Query: 197 VHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISWLKNGLPI 246
V ++V PP++ E +P+L ++ +V G+PP T+ WL NG P+
Sbjct: 1 VALTVYYPPRVVSLE-EPELRLEHC--IEFVVR-GNPPPTLHWLHNGQPL 46
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 69.0 bits (169), Expect = 1e-13
Identities = 29/101 (28%), Positives = 38/101 (37%), Gaps = 18/101 (17%)
Query: 11 QQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKV 70
Q + G V C A G+P P I W L ++ R+ V
Sbjct: 394 QVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLV--SAKSNGRL--------------TV 437
Query: 71 FPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVT 111
FP+GTL + Q D G Y C A N G + S H+ V
Sbjct: 438 FPDGTLEVRYAQ-VQDNGTYLCIAANAGG-NDSMPAHLHVR 476
Score = 61.7 bits (150), Expect = 3e-11
Identities = 28/89 (31%), Positives = 36/89 (40%), Gaps = 5/89 (5%)
Query: 117 RPMGNVSAIAGEPLYLGCPVAGYPIESITW---QKGVQQLPLNRRQKVFPNGTLLIENVQ 173
R V G + C G P +I W +K + N R VFP+GTL + Q
Sbjct: 390 RKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDGTLEVRYAQ 449
Query: 174 KDHDRGVYWCTATNKQGRSSSQNVHISVT 202
D G Y C A N G + S H+ V
Sbjct: 450 -VQDNGTYLCIAANAGG-NDSMPAHLHVR 476
Score = 29.7 bits (67), Expect = 0.92
Identities = 14/51 (27%), Positives = 17/51 (33%), Gaps = 1/51 (1%)
Query: 204 PPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSAMGVGR 254
Q + G C GDPP I WL ++SA GR
Sbjct: 385 ARIRDRKAQQVFVDEGHTVQFVCRAD-GDPPPAILWLSPRKHLVSAKSNGR 434
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 68.7 bits (168), Expect = 1e-13
Identities = 17/116 (14%), Positives = 32/116 (27%), Gaps = 19/116 (16%)
Query: 11 QQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKV 70
G ++++C + +
Sbjct: 255 AWEAHLGDTLTIRCDTKQQGMTKVWVSPSN-----------------EQVLSQGSNGSVS 297
Query: 71 FPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGNVSAIA 126
NG L + VQ + D GVY C A + + + +V + V ++A A
Sbjct: 298 VRNGDLFFKKVQVE-DGGVYTCYAMGETF-NETLSVELKVYNFTLHGHHDTLNAAA 351
Score = 66.8 bits (163), Expect = 6e-13
Identities = 17/96 (17%), Positives = 30/96 (31%), Gaps = 4/96 (4%)
Query: 118 PMGNVSAIAGEPLYLGCPVAGYPIESITW--QKGVQQLPLNRRQKVFPNGTLLIENVQKD 175
A G+ L + C + + + NG L + VQ +
Sbjct: 252 KESAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSVRNGDLFFKKVQVE 311
Query: 176 HDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFE 211
D GVY C A + + + +V + V +
Sbjct: 312 -DGGVYTCYAMGETF-NETLSVELKVYNFTLHGHHD 345
>1he7_A High affinity nerve growth factor receptor; transferase,
TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP:
b.1.1.4 PDB: 1wwa_X 1www_X
Length = 126
Score = 64.6 bits (157), Expect = 2e-13
Identities = 19/115 (16%), Positives = 32/115 (27%), Gaps = 13/115 (11%)
Query: 1 SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQ 60
SH + T + G P P + W +G L
Sbjct: 1 SHMPASVQL--HTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFT--------- 49
Query: 61 QLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPF 115
+ + +G L + + G Y A N G +S ++ + PF
Sbjct: 50 EFLEPAANETVRHGCLRLNQPTHV-NNGNYTLLAANPFG-QASASIMAAFMDNPF 102
Score = 54.2 bits (130), Expect = 1e-09
Identities = 16/88 (18%), Positives = 24/88 (27%), Gaps = 12/88 (13%)
Query: 134 CPVAGYPIESITWQKGVQQLPLNRRQKV----------FPNGTLLIENVQKDHDRGVYWC 183
V G P S+ W L +G L + + G Y
Sbjct: 22 FSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHV-NNGNYTL 80
Query: 184 TATNKQGRSSSQNVHISVTVPPKIAPFE 211
A N G +S ++ + P E
Sbjct: 81 LAANPFG-QASASIMAAFMDNPFEFNPE 107
Score = 31.8 bits (72), Expect = 0.066
Identities = 10/45 (22%), Positives = 15/45 (33%), Gaps = 8/45 (17%)
Query: 204 PPKIAPFEFQPDLHSGDRAGVQCL--VTKGDPPLTISWLKNGLPI 246
P LH+ C+ G P ++ WL NG +
Sbjct: 3 MPASVQ------LHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVL 41
>1gxe_A Myosin binding protein C, cardiac-type; cytoskeleton, muscle, IGI,
thick filament, immunoglobulin domain; NMR {Homo
sapiens} SCOP: b.1.1.4
Length = 139
Score = 63.6 bits (154), Expect = 6e-13
Identities = 19/113 (16%), Positives = 32/113 (28%), Gaps = 15/113 (13%)
Query: 12 QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVF 71
+ G + L +G+P P + W+ E +K+
Sbjct: 28 IVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLL 87
Query: 72 P-------------NGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVT 111
+E +K+ D GVY T N G N+ + V
Sbjct: 88 CETEGRVRVETTKDRSIFTVEGAEKE-DEGVYTVTVKNPVG-EDQVNLTVKVI 138
Score = 57.8 bits (139), Expect = 6e-11
Identities = 23/121 (19%), Positives = 36/121 (29%), Gaps = 34/121 (28%)
Query: 114 PFVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFP---------- 163
R + +AG L L P++G P ++ WQK + Q +
Sbjct: 20 CPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDE 79
Query: 164 ----------------------NGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISV 201
+E +K+ D GVY T N G N+ + V
Sbjct: 80 WVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKE-DEGVYTVTVKNPVG-EDQVNLTVKV 137
Query: 202 T 202
Sbjct: 138 I 138
Score = 31.6 bits (71), Expect = 0.092
Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 6/54 (11%)
Query: 197 VHISVTVPPKI--APFEFQPD---LHSGDRAGVQCLVTKGDPPLTISWLKNGLP 245
H S PPKI PD + +G++ + ++ GDP T+ W K
Sbjct: 6 HHSSRQEPPKIHLDCPGRIPDTIVVVAGNKLRLDVPIS-GDPAPTVIWQKAITQ 58
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 66.7 bits (163), Expect = 6e-13
Identities = 25/114 (21%), Positives = 40/114 (35%), Gaps = 18/114 (15%)
Query: 1 SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQ 60
P ++ + G LKC A+ +SW N +
Sbjct: 340 YAPVIVEPPADLNVTEGMAAELKCRAST-SLTSVSWITP----------NGTVMTHGA-- 386
Query: 61 QLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP 114
R V +GTL NV D G+Y C +N G +++ + ++VTG
Sbjct: 387 ---YKVRIAVLSDGTLNFTNVTV-QDTGMYTCMVSNSVG-NTTASATLNVTGTH 435
Score = 59.0 bits (143), Expect = 2e-10
Identities = 20/89 (22%), Positives = 37/89 (41%), Gaps = 7/89 (7%)
Query: 121 NVSAIAGEPLYLGCPVAGYPIESITW----QKGVQQLPLNRRQKVFPNGTLLIENVQKDH 176
+++ G L C + + S++W + R V +GTL NV
Sbjct: 350 DLNVTEGMAAELKCRAST-SLTSVSWITPNGTVMTHGAYKVRIAVLSDGTLNFTNVTV-Q 407
Query: 177 DRGVYWCTATNKQGRSSSQNVHISVTVPP 205
D G+Y C +N G +++ + ++VT
Sbjct: 408 DTGMYTCMVSNSVG-NTTASATLNVTGTH 435
>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural
genomics, PSI-biology, NEW YORK struc genomics research
consortium, nysgrc; 2.30A {Homo sapiens}
Length = 124
Score = 62.7 bits (152), Expect = 7e-13
Identities = 20/118 (16%), Positives = 33/118 (27%), Gaps = 19/118 (16%)
Query: 113 APFVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPN-------- 164
++ G+ L L C + S+ W V N
Sbjct: 2 GSLTNHTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHH 61
Query: 165 ----GTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKI----APFEFQP 214
++ + NV D GVY C + + V + V K P ++P
Sbjct: 62 SANQLSITVPNVTL-QDEGVYKCLHYSDSVSTKE--VKVIVLATMKGEFCRYPSHWRP 116
Score = 51.1 bits (122), Expect = 1e-08
Identities = 17/104 (16%), Positives = 37/104 (35%), Gaps = 12/104 (11%)
Query: 12 QTLQPGPPVSLKCIATGNPTPHISW-KLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKV 70
T++ G ++LKC+ + + W G+ + + + + ++ Q
Sbjct: 11 ITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPV---LKNSKYQ-----LLHHS 62
Query: 71 FPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP 114
++ + NV D GVY C + + V + V
Sbjct: 63 ANQLSITVPNVTL-QDEGVYKCLHYSDSVSTKE--VKVIVLATM 103
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 126
Score = 62.7 bits (152), Expect = 8e-13
Identities = 22/124 (17%), Positives = 36/124 (29%), Gaps = 22/124 (17%)
Query: 115 FVRPMGNVSAIAGEPLYLGCPVAGYPIE---SITWQKG------------VQQLPLNRRQ 159
F+ + GE + V + +I W KG +Q R
Sbjct: 10 FIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERH 69
Query: 160 KVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSG 219
+ I + + G Y C T K S + + V P++ SG
Sbjct: 70 SRVYTFEMQIIKAKDN-FAGNYRCEVTYKDKFDSC-SFDLEVHESTGTT-----PNIDSG 122
Query: 220 DRAG 223
+G
Sbjct: 123 PSSG 126
Score = 58.5 bits (141), Expect = 3e-11
Identities = 21/121 (17%), Positives = 36/121 (29%), Gaps = 12/121 (9%)
Query: 1 SHPQLIYKFIQQTLQPGPPVSLKCIATGNP---TPHISWKLDGYPLAGDRHENKNRIGEA 57
S I K T++ G ++ P I W G + ++ G+
Sbjct: 6 SGILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKW------FKGKWMDLASKAGK- 58
Query: 58 RVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVR 117
+Q R + I + + G Y C T K S + + V +
Sbjct: 59 HLQLKETFERHSRVYTFEMQIIKAKDN-FAGNYRCEVTYKDKFDSC-SFDLEVHESTGTT 116
Query: 118 P 118
P
Sbjct: 117 P 117
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 65.9 bits (161), Expect = 1e-12
Identities = 26/114 (22%), Positives = 41/114 (35%), Gaps = 19/114 (16%)
Query: 1 SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQ 60
S P ++ + G LKC P + W L +
Sbjct: 351 SAPFIMDAPRDLNISEGRMAELKCRTP--PMSSVKWLLPNGTVLSHAS------------ 396
Query: 61 QLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP 114
+ R V +GTL +V D GVY C TN G +S+ + +++V+ A
Sbjct: 397 ---RHPRISVLNDGTLNFSHVLL-SDTGVYTCMVTNVAG-NSNASAYLNVSTAG 445
Score = 58.6 bits (142), Expect = 4e-10
Identities = 22/93 (23%), Positives = 38/93 (40%), Gaps = 8/93 (8%)
Query: 121 NVSAIAGEPLYLGCPVAGYPIESITW----QKGVQQLPLNRRQKVFPNGTLLIENVQKDH 176
+++ G L C P+ S+ W + + R V +GTL +V
Sbjct: 361 DLNISEGRMAELKCRTP--PMSSVKWLLPNGTVLSHASRHPRISVLNDGTLNFSHVLL-S 417
Query: 177 DRGVYWCTATNKQGRSSSQNVHISVTVPPKIAP 209
D GVY C TN G +S+ + +++V+
Sbjct: 418 DTGVYTCMVTNVAG-NSNASAYLNVSTAGTHHH 449
>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 115
Score = 61.6 bits (150), Expect = 2e-12
Identities = 21/115 (18%), Positives = 38/115 (33%), Gaps = 15/115 (13%)
Query: 99 GRSSSQNVHISVTGAP--FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLN 156
G S S V G + + +V G C ++ E + W L N
Sbjct: 1 GSSGSS---GLVQGRRVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHAN 57
Query: 157 RRQKVFPNG----TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKI 207
++ L + + D G + A ++ R+S+ + VT P +
Sbjct: 58 ELNEIDAQPGGYHVLTLRQLALK-DSGTIYFEAGDQ--RASAA---LRVTEKPSV 106
Score = 53.6 bits (129), Expect = 1e-09
Identities = 16/96 (16%), Positives = 31/96 (32%), Gaps = 22/96 (22%)
Query: 8 KFIQ----QTLQPGPPVSLKCIATGNPTPHISWKLDGYPL-AGDRHENKNRIGEARVQQL 62
I+ +Q G + +C + + W LD PL A + +E + G
Sbjct: 15 HIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQPGGYH---- 70
Query: 63 PLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQ 98
L + + D G + A +++
Sbjct: 71 ------------VLTLRQLALK-DSGTIYFEAGDQR 93
Score = 30.8 bits (70), Expect = 0.15
Identities = 5/28 (17%), Positives = 11/28 (39%), Gaps = 1/28 (3%)
Query: 219 GDRAGVQCLVTKGDPPLTISWLKNGLPI 246
G A +C ++ + W + P+
Sbjct: 28 GSSATFRCRIS-PANYEPVHWFLDKTPL 54
>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 103
Score = 61.2 bits (149), Expect = 2e-12
Identities = 20/102 (19%), Positives = 40/102 (39%), Gaps = 8/102 (7%)
Query: 109 SVTGAP--FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNG- 165
S + P ++P+ + GE + L C ++ + W K + + +++ V G
Sbjct: 3 SGSSGPAAIIKPLEDQWVAPGEDVELRCELSRAGTP-VHWLKDRKAIRKSQKYDVVCEGT 61
Query: 166 --TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPP 205
L+I D G Y C + ++S +V + P
Sbjct: 62 MAMLVIRGASLK-DAGEYTCEVEASKS-TASLHVEEKASGPS 101
Score = 46.9 bits (112), Expect = 3e-07
Identities = 21/111 (18%), Positives = 36/111 (32%), Gaps = 21/111 (18%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPL-AGDRHENKNRIGEARVQQ 61
+I Q + PG V L+C + TP + W D + +++ G
Sbjct: 9 AAIIKPLEDQWVAPGEDVELRCELSRAGTP-VHWLKDRKAIRKSQKYDVVCE-GTMA--- 63
Query: 62 LPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTG 112
L+I D G Y C + ++S +V +G
Sbjct: 64 -------------MLVIRGASLK-DAGEYTCEVEASKS-TASLHVEEKASG 99
Score = 31.1 bits (71), Expect = 0.10
Identities = 7/28 (25%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 219 GDRAGVQCLVTKGDPPLTISWLKNGLPI 246
G+ ++C +++ P + WLK+ I
Sbjct: 23 GEDVELRCELSRAGTP--VHWLKDRKAI 48
>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 106
Score = 60.1 bits (146), Expect = 5e-12
Identities = 17/106 (16%), Positives = 40/106 (37%), Gaps = 10/106 (9%)
Query: 109 SVTGAP--FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNG- 165
S + ++ + +++ A E C V+ + W K ++ ++R + G
Sbjct: 3 SGSSGQLEVLQDIADLTVKAAEQAVFKCEVSDEKVT-GKWYKNGVEVRPSKRITISHVGR 61
Query: 166 --TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAP 209
L+I++V+ + D G Y S++ ++ P
Sbjct: 62 FHKLVIDDVRPE-DEGDYTFVPDGYALSLSAK---LNFLEIKVSGP 103
Score = 50.1 bits (120), Expect = 2e-08
Identities = 16/119 (13%), Positives = 33/119 (27%), Gaps = 33/119 (27%)
Query: 8 KFIQ----QTLQPGPPVSLKCIATGNPTPHISWKLDGYPL-AGDRHENKNRIGEARVQQL 62
+ +Q T++ KC + W +G + R
Sbjct: 10 EVLQDIADLTVKAAEQAVFKCEVSD-EKVTGKWYKNGVEVRPSKRI-------------- 54
Query: 63 PLNRRQKVFPNG---TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRP 118
+ G L+I++V+ + D G Y S++ ++ P
Sbjct: 55 ------TISHVGRFHKLVIDDVRPE-DEGDYTFVPDGYALSLSAK---LNFLEIKVSGP 103
Score = 31.6 bits (72), Expect = 0.071
Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 7/44 (15%)
Query: 208 APFEFQPDLHS-----GDRAGVQCLVTKGDPPLTISWLKNGLPI 246
E D+ ++A +C V+ D +T W KNG+ +
Sbjct: 7 GQLEVLQDIADLTVKAAEQAVFKCEVS--DEKVTGKWYKNGVEV 48
>2edh_A Obscurin; structural genomics, NPPSFA, national project on P
structural and functional analyses, riken structural
genomics/proteomics initiative; NMR {Homo sapiens}
Length = 113
Score = 59.7 bits (145), Expect = 7e-12
Identities = 25/117 (21%), Positives = 44/117 (37%), Gaps = 16/117 (13%)
Query: 94 ATNKQGRSSSQNVHISVTGAP--FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQ 151
++ GR+S ++V P F + N A G L C ++ + W KG +
Sbjct: 2 SSGSSGRTS---AMLTVRALPIKFTEGLRNEEATEGATAVLRCELSKMA--PVEWWKGHE 56
Query: 152 QLPLNRRQKVFPNG---TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPP 205
L R + +G L I + + D G Y C ++ + ++V P
Sbjct: 57 TLRDGDRHSLRQDGARCELQIRGLVAE-DAGEYLCMCGKERTSA-----MLTVRAMP 107
Score = 42.4 bits (100), Expect = 1e-05
Identities = 17/112 (15%), Positives = 29/112 (25%), Gaps = 28/112 (25%)
Query: 7 YKFIQ----QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
KF + + G L+C + + W L R
Sbjct: 20 IKFTEGLRNEEATEGATAVLRCELSKMAP--VEWWKGHETLRDGD----------RHSLR 67
Query: 63 PLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP 114
R L I + + D G Y C ++ + ++V P
Sbjct: 68 QDGARC------ELQIRGLVAE-DAGEYLCMCGKERTSA-----MLTVRAMP 107
Score = 28.5 bits (64), Expect = 1.0
Identities = 6/28 (21%), Positives = 12/28 (42%), Gaps = 3/28 (10%)
Query: 219 GDRAGVQCLVTKGDPPLTISWLKNGLPI 246
G A ++C ++ P + W K +
Sbjct: 34 GATAVLRCELS-KMAP--VEWWKGHETL 58
>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond,
glycoprotein, immunoglobulin membrane, transmembrane;
HET: NAG; 2.21A {Mus musculus}
Length = 108
Score = 59.5 bits (144), Expect = 8e-12
Identities = 21/110 (19%), Positives = 37/110 (33%), Gaps = 16/110 (14%)
Query: 109 SVTGAPFVRP-MGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNG-- 165
V G+ P NV+ + G L C V S+ W QQ +K +
Sbjct: 2 KVKGSQGQFPLTQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRI 61
Query: 166 ----------TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPP 205
++ + +V D G Y C+ + + +++V P
Sbjct: 62 ELVRASWHELSISVSDVSLS-DEGQYTCSLFTMPVK--TSKAYLTVLGVP 108
Score = 45.6 bits (108), Expect = 9e-07
Identities = 17/103 (16%), Positives = 36/103 (34%), Gaps = 12/103 (11%)
Query: 13 TLQPGPPVSLKCIATGNPTPHISW-KLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVF 71
T+ G L C N + W L D + + R++ + + +
Sbjct: 17 TVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDK---KALRDNRIELVRASWHEL-- 71
Query: 72 PNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP 114
++ + +V D G Y C+ + + +++V G P
Sbjct: 72 ---SISVSDVSLS-DEGQYTCSLFTMPVK--TSKAYLTVLGVP 108
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain,
SLOW-type myosin-binding protein C, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 100
Score = 58.1 bits (141), Expect = 2e-11
Identities = 19/102 (18%), Positives = 35/102 (34%), Gaps = 11/102 (10%)
Query: 109 SVTGAP--FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNG- 165
S + + P+ + + G+ + L C ++ W K + + R KV G
Sbjct: 2 SSGSSGLKILTPLTDQTVNLGKEICLKCEISENI--PGKWTKNGLPVQESDRLKVVQKGR 59
Query: 166 --TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPP 205
L+I N + D G Y ++ + V P
Sbjct: 60 IHKLVIANALTE-DEGDYVFAPDAYNVTLPAK---VHVISGP 97
Score = 46.6 bits (111), Expect = 3e-07
Identities = 21/105 (20%), Positives = 34/105 (32%), Gaps = 24/105 (22%)
Query: 8 KFIQ----QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLP 63
K + QT+ G + LKC + N W +G P+ R++ +
Sbjct: 9 KILTPLTDQTVNLGKEICLKCEISENIPGK--WTKNGLPVQESD----------RLKVVQ 56
Query: 64 LNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHI 108
R L+I N + D G Y + VH+
Sbjct: 57 KGRIH------KLVIANALTE-DEGDYVFAPDAYNV-TLPAKVHV 93
Score = 29.2 bits (66), Expect = 0.47
Identities = 9/28 (32%), Positives = 15/28 (53%), Gaps = 3/28 (10%)
Query: 219 GDRAGVQCLVTKGDPPLTISWLKNGLPI 246
G ++C ++ + P W KNGLP+
Sbjct: 22 GKEICLKCEIS-ENIPGK--WTKNGLPV 46
>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily,
immune system; HET: NAG; 3.00A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.3 PDB: 1i8l_A*
Length = 201
Score = 60.4 bits (146), Expect = 2e-11
Identities = 27/149 (18%), Positives = 53/149 (35%), Gaps = 22/149 (14%)
Query: 121 NVSAIAGEPLYLGC----PVAGYPIESITWQKGVQQLPL--NRRQKVFP----------- 163
+V+ E L C V I WQK + + + ++P
Sbjct: 3 HVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDIT 62
Query: 164 -NGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTV---PPKIAPFEFQPDLHSG 219
N +++I ++ D G Y C + + + VT+ P ++ +
Sbjct: 63 NNLSIVILALRPS-DEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPSISDFEIPTS 121
Query: 220 DRAGVQCLVTKGDPPLTISWLKNGLPILS 248
+ + C + G P +SWL+NG + +
Sbjct: 122 NIRRIICSTSGGFPEPHLSWLENGEELNA 150
Score = 48.1 bits (114), Expect = 5e-07
Identities = 19/142 (13%), Positives = 40/142 (28%), Gaps = 15/142 (10%)
Query: 73 NGTLLIENVQKDHDRGVYWCTATNKQGRSSSQ----NVHISVTGAPFVRPMGNVSAIAGE 128
N +++I ++ D G Y C + + + V +SV + +
Sbjct: 64 NLSIVILALRPS-DEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPSISDFEIPTSN 122
Query: 129 PLYLGCPVAG-YPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQ-----KDHDRGVYW 182
+ C +G +P ++W + ++L T L V +
Sbjct: 123 IRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDPETELY-AVSSKLDFNMTTNHSFM 181
Query: 183 CTATNKQGRSSSQNVHISVTVP 204
C N +
Sbjct: 182 CLIKYG---HLRVNQTFNWNTA 200
Score = 29.2 bits (65), Expect = 0.92
Identities = 16/100 (16%), Positives = 24/100 (24%), Gaps = 19/100 (19%)
Query: 13 TLQPGPPVSLKCIATG-NPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVF 71
+ + C +G P PH+SW +G L V Q P V
Sbjct: 117 EIPTSNIRRIICSTSGGFPEPHLSWLENGEELNAINTT---------VSQDPETELYAV- 166
Query: 72 PNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVT 111
+ L + C N +
Sbjct: 167 -SSKLDF----NMTTNHSFMCLIKYG---HLRVNQTFNWN 198
>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding
domain of CD48, immune system; HET: NAG; 2.60A {Rattus
norvegicus}
Length = 180
Score = 59.9 bits (145), Expect = 3e-11
Identities = 30/146 (20%), Positives = 46/146 (31%), Gaps = 28/146 (19%)
Query: 121 NVSAIAGEPLYLGCPV-AGYPIESITWQKGVQQLPL----------------NRRQKVFP 163
NV+AI G + L + +TW Q L +R
Sbjct: 8 NVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKT 67
Query: 164 NGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVP-PKIAPFEFQPDLHSGDRA 222
NG L I NV K+ DRG Y+ ++ + + V P I A
Sbjct: 68 NGALRIYNVSKE-DRGDYYMRMLHETEDQWKITMEVYEMVSKPMI--------YWECSNA 118
Query: 223 GVQCLVTKGDPPLTISWLKNGLPILS 248
+ C V +G + + + S
Sbjct: 119 TLTCEVLEGTDV-ELKLYQGKEHLRS 143
Score = 58.0 bits (140), Expect = 1e-10
Identities = 34/191 (17%), Positives = 59/191 (30%), Gaps = 27/191 (14%)
Query: 17 GPPVSLKC-IATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGT 75
G V+L ++W + N + V + +R NG
Sbjct: 14 GSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFK---DRVDLDKTNGA 70
Query: 76 LLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISV-TGAPFV-RPMGNVSAIAGEPLYLG 133
L I NV K+ DRG Y+ ++ + + P + N + L
Sbjct: 71 LRIYNVSKE-DRGDYYMRMLHETEDQWKITMEVYEMVSKPMIYWECSNAT--------LT 121
Query: 134 CPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSS 193
C V + +G + L R++ + T + R + C A N+ + S
Sbjct: 122 CEVLEGTDVELKLYQGKEHLRSLRQKTMSYQWT---------NLRAPFKCKAVNRVSQES 172
Query: 194 SQNVHISVTVP 204
V P
Sbjct: 173 E---MEVVNCP 180
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33;
2.40A {Caenorhabditis elegans} PDB: 1koa_A
Length = 573
Score = 62.2 bits (151), Expect = 3e-11
Identities = 24/112 (21%), Positives = 37/112 (33%), Gaps = 5/112 (4%)
Query: 94 ATNKQGRSSSQNVHISVTGAPFVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQL 153
++ S F+ G+ C V +TW K ++L
Sbjct: 464 HRPQEYSIRDAFWDRSEAQPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDREL 523
Query: 154 PLNRRQKVFPNG---TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVT 202
+ + NG L I V+ D D+G Y A N G V ++VT
Sbjct: 524 KQSVKYMKRYNGNDYGLTINRVKGD-DKGEYTVRAKNSYGTKEEI-VFLNVT 573
Score = 52.1 bits (125), Expect = 5e-08
Identities = 22/111 (19%), Positives = 36/111 (32%), Gaps = 20/111 (18%)
Query: 2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLA-GDRHENKNRIGEARVQ 60
P+ I K + G + C + P ++W D L ++ + +
Sbjct: 482 QPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDY--- 538
Query: 61 QLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVT 111
L I V+ D D+G Y A N G V ++VT
Sbjct: 539 --------------GLTINRVKGD-DKGEYTVRAKNSYGTKEEI-VFLNVT 573
Score = 27.1 bits (60), Expect = 7.8
Identities = 7/28 (25%), Positives = 11/28 (39%), Gaps = 1/28 (3%)
Query: 219 GDRAGVQCLVTKGDPPLTISWLKNGLPI 246
G A C V P ++W K+ +
Sbjct: 497 GQSANFYCRVI-ASSPPVVTWHKDDREL 523
>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 57.8 bits (140), Expect = 3e-11
Identities = 13/106 (12%), Positives = 32/106 (30%), Gaps = 12/106 (11%)
Query: 109 SVTGAP--FVRPMGNVSAIAGEPLYLGCPVA-GYPIESITWQKGVQQLPLNRRQKVFPNG 165
S + + + + + GE C ++ + W G + + + R + G
Sbjct: 3 SGSSGHVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQG 62
Query: 166 ---TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIA 208
L++ D G + ++S + V +
Sbjct: 63 RKYILVVREAAPS-DAGEVVFSVRGLTSKAS-----LIVRERSGPS 102
Score = 47.0 bits (112), Expect = 3e-07
Identities = 11/103 (10%), Positives = 28/103 (27%), Gaps = 24/103 (23%)
Query: 2 HPQLIYKFIQQTLQPGPPVSLKC-IATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQ 60
H + + + G S +C ++ + + W + G +
Sbjct: 8 HVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGG-------------------K 48
Query: 61 QLPLNRRQKVFPNG---TLLIENVQKDHDRGVYWCTATNKQGR 100
+ + R + G L++ D G + +
Sbjct: 49 TVGSSSRFQATRQGRKYILVVREAAPS-DAGEVVFSVRGLTSK 90
Score = 38.9 bits (91), Expect = 2e-04
Identities = 9/57 (15%), Positives = 19/57 (33%), Gaps = 10/57 (17%)
Query: 192 SSSQNVHISVTVPPKIAPFEFQPDL--HSGDRAGVQCLVTKGDPPLTISWLKNGLPI 246
SS + H+ +T K + G+ +C+++ W G +
Sbjct: 2 SSGSSGHVGITKRLK--------TMEVLEGESCSFECVLSHESASDPAMWTVGGKTV 50
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase,
glycoprotein, receptor protei tyrosine phosphatase, cell
adhesion; HET: NAG; 3.10A {Homo sapiens}
Length = 731
Score = 62.1 bits (150), Expect = 4e-11
Identities = 27/192 (14%), Positives = 49/192 (25%), Gaps = 29/192 (15%)
Query: 20 VSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIE 79
+++ P + W + G E + N ++ E
Sbjct: 94 LNVYVKVNNGPLGNPIWNISG------DPTRTWNRAELAISTFWPN-------FYQVIFE 140
Query: 80 NVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGNVSAIAGEPLYLGCPVAGY 139
+ H +G + T P + NV AG+ C G
Sbjct: 141 VITSGH-QGYLAIDEVK--------VLGHPCTRTPHFLRIQNVEVNAGQFATFQCSAIGR 191
Query: 140 PIESITWQKGVQQLPLNRRQKVFPN------GTLLIENVQKDHDRGVYWCTATNKQGRSS 193
+ + +++ + + N K D G Y C + G
Sbjct: 192 TVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTK-RDAGKYRCMIRTEGGVGI 250
Query: 194 SQNVHISVTVPP 205
S + V PP
Sbjct: 251 SNYAELVVKEPP 262
Score = 49.8 bits (118), Expect = 4e-07
Identities = 18/126 (14%), Positives = 31/126 (24%), Gaps = 16/126 (12%)
Query: 1 SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQ 60
+ + + G + +C A G L G + + R
Sbjct: 163 TRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRF- 221
Query: 61 QLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMG 120
+ + N K D G Y C + G S + V P P+
Sbjct: 222 ------------IASFNVVNTTK-RDAGKYRCMIRTEGGVGISNYAELVVKEPP--VPIA 266
Query: 121 NVSAIA 126
+
Sbjct: 267 PPQLAS 272
Score = 44.0 bits (103), Expect = 3e-05
Identities = 25/174 (14%), Positives = 44/174 (25%), Gaps = 19/174 (10%)
Query: 84 DHDRGVYWCTATNKQGRSSSQNVHI--------SVTGAPFVRPMGNVSAIAGEPLYLGCP 135
D N GR Q H+ F + + S L +
Sbjct: 40 DPWMPSGSFMLVNASGRPEGQRAHLLLPQLKENDTHCIDFHYFVSSKSNSPPGLLNVYVK 99
Query: 136 VAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQ 195
V P+ + W R L I + V + T+ +
Sbjct: 100 VNNGPLGNPIWNISGDPTRTWNR------AELAISTFWPN-FYQVIFEVITSGHQGYLAI 152
Query: 196 NVHISVTVPPKIAPFEFQP---DLHSGDRAGVQCLVTKGDPPLTISWLKNGLPI 246
+ + P P + ++++G A QC G G+ +
Sbjct: 153 DEVKVLGHPCTRTPHFLRIQNVEVNAGQFATFQCSAI-GRTVAGDRLWLQGIDV 205
>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton,
immunoglobulin domain, muscle protein, phosphorylation,
repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A
1tiu_A 2rq8_A
Length = 93
Score = 56.5 bits (137), Expect = 7e-11
Identities = 17/85 (20%), Positives = 29/85 (34%), Gaps = 9/85 (10%)
Query: 112 GAP----FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNG-- 165
GA +P+ V GE + + P W+ Q L + ++ +G
Sbjct: 1 GAMALIEVEKPLYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLAASPDCEIIEDGKK 59
Query: 166 -TLLIENVQKDHDRGVYWCTATNKQ 189
L++ N Q G A N +
Sbjct: 60 HILILHNCQLG-MTGEVSFQAANTK 83
Score = 45.8 bits (109), Expect = 5e-07
Identities = 17/99 (17%), Positives = 28/99 (28%), Gaps = 30/99 (30%)
Query: 8 KFIQ----QTLQPGPPVSLKCIATGNPTPHISWKLDGYPL-AGDRHENKNRIGEARVQQL 62
+ + + G + + P H WKL G PL A
Sbjct: 7 EVEKPLYGVEVFVGETAHFEIELS-EPDVHGQWKLKGQPLAASPDC-------------- 51
Query: 63 PLNRRQKVFPNG---TLLIENVQKDHDRGVYWCTATNKQ 98
++ +G L++ N Q G A N +
Sbjct: 52 ------EIIEDGKKHILILHNCQLG-MTGEVSFQAANTK 83
Score = 30.0 bits (68), Expect = 0.20
Identities = 6/28 (21%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
Query: 219 GDRAGVQCLVTKGDPPLTISWLKNGLPI 246
G+ A + ++ +P + W G P+
Sbjct: 20 GETAHFEIELS--EPDVHGQWKLKGQPL 45
>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal
regulatory protein alpha, immunoglobulin superfamily,
phosphoprotein; HET: NAG; 2.49A {Homo sapiens}
Length = 327
Score = 59.6 bits (144), Expect = 1e-10
Identities = 43/261 (16%), Positives = 79/261 (30%), Gaps = 36/261 (13%)
Query: 15 QPGPPVSLKCIATGN-PTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPN 73
G L C T P I W + AG + I + P R V +
Sbjct: 16 AAGESAILHCTVTSLIPVGPIQW----FRGAG---PARELIYNQKEGHFP--RVTTVSES 66
Query: 74 G-------TLLIENVQKDHDRGVYWC------TATNKQGRSSSQNVHISVTGAPFVRPMG 120
++ I N+ D G Y+C + + + + + + V
Sbjct: 67 TKRENMDFSISISNITPA-DAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSGP 125
Query: 121 NVSAIAGEPLYLGCPVAGYPIESIT--WQKGVQQLPLNRRQ--KVFPNGT-----LLIEN 171
A + C G+ IT W K +L + V + +
Sbjct: 126 AARATPQHTVSFTCESHGFSPRDITLKWFKNGNELSDFQTNVDPVGESVSYSIHSTAKVV 185
Query: 172 VQKDHDRGVYWCTATNKQGRSSSQ--NVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVT 229
+ ++ C + + ++S T+ Q + + ++ V C V
Sbjct: 186 LTREDVHSQVICEVAHVTLQGDPLRGTANLSETIRVPPTLEVTQQPVRAENQVNVTCQVR 245
Query: 230 KGDP-PLTISWLKNGLPILSA 249
K P L ++WL+NG +
Sbjct: 246 KFYPQRLQLTWLENGNVSRTE 266
Score = 45.7 bits (108), Expect = 5e-06
Identities = 31/152 (20%), Positives = 46/152 (30%), Gaps = 25/152 (16%)
Query: 122 VSAIAGEPLYLGCPVAGY-PIESITWQKGVQQLPL---NRRQKVFPNG------------ 165
VS AGE L C V P+ I W +G N+++ FP
Sbjct: 13 VSVAAGESAILHCTVTSLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSESTKRENM 72
Query: 166 --TLLIENVQKDHDRGVYWCTATNK-----QGRSSSQNVHISVTVPPKIAPFEFQPDLHS 218
++ I N+ D G Y+C K + +S + P
Sbjct: 73 DFSISISNITPA-DAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSGPAARATP 131
Query: 219 GDRAGVQCLVTKGDP-PLTISWLKNGLPILSA 249
C P +T+ W KNG +
Sbjct: 132 QHTVSFTCESHGFSPRDITLKWFKNGNELSDF 163
>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} PDB: 2yz8_A
Length = 103
Score = 54.3 bits (131), Expect = 6e-10
Identities = 19/103 (18%), Positives = 40/103 (38%), Gaps = 12/103 (11%)
Query: 109 SVTGAP--FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNG- 165
S + P F + ++ + G L C ++ + W G L + + G
Sbjct: 3 SGSSGPVRFQEALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQEGA 61
Query: 166 --TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPK 206
L++ N++ D G Y C+ ++ ++ ++VT P
Sbjct: 62 MLELVVRNLRPQ-DSGRYSCSFGDQTTSAT-----LTVTALPS 98
Score = 43.9 bits (104), Expect = 4e-06
Identities = 19/112 (16%), Positives = 41/112 (36%), Gaps = 29/112 (25%)
Query: 8 KFIQ----QTLQPGPPVSLKCIATGNPTPHISWKLDGYPL-AGDRHENKNRIGEARVQQL 62
+F + + G +L+C+ + P + W L GD++ + G
Sbjct: 10 RFQEALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQE-GAML---- 63
Query: 63 PLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP 114
L++ N++ D G Y C+ ++ ++ ++VT P
Sbjct: 64 ------------ELVVRNLRPQ-DSGRYSCSFGDQTTSAT-----LTVTALP 97
Score = 30.0 bits (68), Expect = 0.20
Identities = 4/28 (14%), Positives = 11/28 (39%), Gaps = 2/28 (7%)
Query: 219 GDRAGVQCLVTKGDPPLTISWLKNGLPI 246
G A ++C+++ + W +
Sbjct: 23 GGAATLRCVLS--SVAAPVKWCYGNNVL 48
>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2edl_A
2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A
Length = 108
Score = 53.9 bits (130), Expect = 8e-10
Identities = 21/102 (20%), Positives = 38/102 (37%), Gaps = 13/102 (12%)
Query: 109 SVTGAP--FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNG- 165
S + P F + + A G L C ++ + W+KG + L R + +G
Sbjct: 3 SGSSGPARFTQDLKTKEASEGATATLQCELSKVA--PVEWKKGPETLRDGGRYSLKQDGT 60
Query: 166 --TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPP 205
L I ++ D G Y C ++ + ++V P
Sbjct: 61 RCELQIHDLSVA-DAGEYSCMCGQERTSA-----TLTVRALP 96
Score = 43.5 bits (103), Expect = 5e-06
Identities = 23/123 (18%), Positives = 37/123 (30%), Gaps = 32/123 (26%)
Query: 8 KFIQ----QTLQPGPPVSLKCIATGNPTPHISWKLDGYPL-AGDRHENKNRIGEARVQQL 62
+F Q + G +L+C + + WK L G R+ K G
Sbjct: 10 RFTQDLKTKEASEGATATLQCEL--SKVAPVEWKKGPETLRDGGRYSLKQD-GTRC---- 62
Query: 63 PLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP--FVRPMG 120
L I ++ D G Y C ++ + ++V P F G
Sbjct: 63 ------------ELQIHDLSVA-DAGEYSCMCGQERTSA-----TLTVRALPARFTEGSG 104
Query: 121 NVS 123
S
Sbjct: 105 PSS 107
Score = 28.5 bits (64), Expect = 0.77
Identities = 10/44 (22%), Positives = 16/44 (36%), Gaps = 8/44 (18%)
Query: 208 APFEFQPDLHS-----GDRAGVQCLVTKGDPPLTISWLKNGLPI 246
P F DL + G A +QC ++ + W K +
Sbjct: 7 GPARFTQDLKTKEASEGATATLQCELS---KVAPVEWKKGPETL 47
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states,
actin-binding, cardiomyopathy, cell adhesion, disease
mutation, immunoglobulin domain; 1.30A {Homo sapiens}
PDB: 2v6h_A 2avg_A
Length = 108
Score = 54.2 bits (130), Expect = 8e-10
Identities = 21/103 (20%), Positives = 31/103 (30%), Gaps = 17/103 (16%)
Query: 115 FVRPMGNVSAIAGEPLYLGCPVAGYPIE---SITWQKG------------VQQLPLNRRQ 159
FV + G + VAG + + W KG +Q R
Sbjct: 7 FVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRA 66
Query: 160 KVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVT 202
L I + Q G Y C + K S N +++V
Sbjct: 67 SKVYLFELHITDAQPA-FTGSYRCEVSTKDKFDCS-NFNLTVH 107
Score = 51.9 bits (124), Expect = 4e-09
Identities = 19/110 (17%), Positives = 35/110 (31%), Gaps = 16/110 (14%)
Query: 9 FIQ----QTLQPGPPVSLKCIATGNP---TPHISWKLDGYPLAGDRHENKNRIGEARVQQ 61
F+ + G ++ G P + W G + +++G+ +Q
Sbjct: 7 FVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKW------FKGKWVDLSSKVGQ-HLQL 59
Query: 62 LPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVT 111
R L I + Q G Y C + K S N +++V
Sbjct: 60 HDSYDRASKVYLFELHITDAQPA-FTGSYRCEVSTKDKFDCS-NFNLTVH 107
>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon,
CD3-delta, UCHT1-SCFV, immunoglobulin fold,
antibody-antigen complex; 1.90A {Homo sapiens} SCOP:
b.1.1.4
Length = 105
Score = 53.2 bits (127), Expect = 2e-09
Identities = 16/81 (19%), Positives = 31/81 (38%), Gaps = 4/81 (4%)
Query: 125 IAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPN--GTLLIENVQKDHDRGVYW 182
I+G + L CP YP I WQ + + + K + L ++ + G Y
Sbjct: 19 ISGTTVILTCPQ--YPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYV 76
Query: 183 CTATNKQGRSSSQNVHISVTV 203
C + ++ +++ V
Sbjct: 77 CYPRGSKPEDANFYLYLRARV 97
Score = 39.8 bits (92), Expect = 9e-05
Identities = 13/91 (14%), Positives = 26/91 (28%), Gaps = 19/91 (20%)
Query: 17 GPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTL 76
G V L C P I W+ + + GD + + L
Sbjct: 21 GTTVILTCPQ--YPGSEILWQHNDKNIGGDE-----------------DDKNIGSDEDHL 61
Query: 77 LIENVQKDHDRGVYWCTATNKQGRSSSQNVH 107
++ + G Y C + ++ ++
Sbjct: 62 SLKEFSELEQSGYYVCYPRGSKPEDANFYLY 92
>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain,
integrin, allosteric mobility, cell adhesi immune
system; HET: NAG; 2.10A {Homo sapiens}
Length = 196
Score = 55.1 bits (132), Expect = 2e-09
Identities = 18/126 (14%), Positives = 35/126 (27%), Gaps = 9/126 (7%)
Query: 121 NVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGV 180
G L+L C E + +++ R + + ++++
Sbjct: 11 VAFVERGGSLWLNCSTNCPRPERGGLETSLRRNGTQRGLR---WLARQLVDIREPE--TQ 65
Query: 181 YWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPD-LHSGDRAGVQCLVTKGDPP--LTI 237
C R+ I P P G+ + C V P LT+
Sbjct: 66 PVCFFRC-ARRTLQARGLIRTFQRPDRVELMPLPPWQPVGENFTLSCRVPGAGPRASLTL 124
Query: 238 SWLKNG 243
+ L+
Sbjct: 125 TLLRGA 130
Score = 53.5 bits (128), Expect = 6e-09
Identities = 25/211 (11%), Positives = 50/211 (23%), Gaps = 35/211 (16%)
Query: 11 QQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKV 70
++ G + L C + + Q+
Sbjct: 11 VAFVERGGSLWLNCSTNCPRPERGGL--------------ETSLRRNGTQRGLRWL---- 52
Query: 71 FPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP--FVRPMGNVSAIAGE 128
+ ++++ C R+ I P GE
Sbjct: 53 ----ARQLVDIREPE--TQPVCFFRC-ARRTLQARGLIRTFQRPDRVELMPLPPWQPVGE 105
Query: 129 PLYLGCPVAG-YPIE--SITWQKGVQQL---PLNRRQKVFPNGTL-LIENVQKDHDRGVY 181
L C V G P ++T +G Q+L L +++ +
Sbjct: 106 NFTLSCRVPGAGPRASLTLTLLRGAQELIRRSFAGEPPRARGAVLTATVLARREDHGANF 165
Query: 182 WCTATNKQGRSSSQNVHISVTVPPKIAPFEF 212
C A R + + + P ++ F
Sbjct: 166 SCRAELDL-RPHGLGLFENSSAPRELRTFSL 195
>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498;
beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 102
Score = 52.4 bits (126), Expect = 3e-09
Identities = 22/84 (26%), Positives = 34/84 (40%), Gaps = 5/84 (5%)
Query: 110 VTGAPFVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNG---T 166
V A V A AG L C VA +TW K ++L + + +V G
Sbjct: 9 VVFAKEQPAHREVQAEAGASATLSCEVAQ-AQTEVTWYKDGKKLSSSSKVRVEAVGCTRR 67
Query: 167 LLIENVQKDHDRGVYWCTATNKQG 190
L+++ + + G Y C A +Q
Sbjct: 68 LVVQQAGQA-EAGEYSCEAGGQQL 90
Score = 44.3 bits (105), Expect = 2e-06
Identities = 18/104 (17%), Positives = 31/104 (29%), Gaps = 23/104 (22%)
Query: 12 QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVF 71
+ G +L C ++W DG L+ +G R
Sbjct: 21 VQAEAGASATLSCEVA-QAQTEVTWYKDGKKLSSSSKVRVEAVGCTR------------- 66
Query: 72 PNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPF 115
L+++ + + G Y C A + S + V G F
Sbjct: 67 ---RLVVQQAGQA-EAGEYSCEAGGQ---QLSFRL--QVAGQCF 101
Score = 31.2 bits (71), Expect = 0.083
Identities = 10/47 (21%), Positives = 17/47 (36%), Gaps = 7/47 (14%)
Query: 205 PKIAPFEFQPDLHS-----GDRAGVQCLVTKGDPPLTISWLKNGLPI 246
K+ + QP G A + C V ++W K+G +
Sbjct: 7 GKVVFAKEQPAHREVQAEAGASATLSCEVA--QAQTEVTWYKDGKKL 51
>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold,
natural killer cell receptor, immune SY; HET: NAG; 1.80A
{Homo sapiens} PDB: 1im9_D
Length = 316
Score = 55.7 bits (134), Expect = 3e-09
Identities = 41/253 (16%), Positives = 72/253 (28%), Gaps = 47/253 (18%)
Query: 13 TLQPGP------PVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNR 66
+ P V+L+C H + + + L + +
Sbjct: 28 SAWPSAVVPRGGHVTLRC--------HYRHRFNNFML--------YKEDRIHIPIFHGRI 71
Query: 67 RQKVFPNGTLLIENVQKDHDRGVYWCTATNK---QGRSS-SQNVHISVTGA--PFVRPMG 120
Q+ F + V H G Y C ++ G S+ S V I VTG
Sbjct: 72 FQESFN-----MSPVTTAH-AGNYTCRGSHPHSPTGWSAPSNPVVIMVTGNHRKPSLLAH 125
Query: 121 NVSAIA-GEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNG---TLLIENVQKDH 176
+ GE + L C ++G+ + P ++ I +
Sbjct: 126 PGPLVKSGERVILQCWSDIMFEHFFLHKEGISKDPSRLVGQIHDGVSKANFSIGPMMLAL 185
Query: 177 DRGVYWCTATNKQGRS----SSQNVHISVTVPPKIAPFEFQPD--LHSGDRAGVQCLVTK 230
G Y C + S + I VT P + QP + +G+ + C +
Sbjct: 186 -AGTYRCYGSVTHTPYQLSAPSDPLDIVVTGPYEKPSLSAQPGPKVQAGESVTLSC--SS 242
Query: 231 GDPPLTISWLKNG 243
+ G
Sbjct: 243 RSSYDMYHLSREG 255
Score = 47.9 bits (114), Expect = 9e-07
Identities = 31/205 (15%), Positives = 54/205 (26%), Gaps = 28/205 (13%)
Query: 12 QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVF 71
++ G V L+C + + L ++ G ++ + +
Sbjct: 128 PLVKSGERVILQC--------WSDIMFEHFFL--------HKEGISKDPSRLVGQIHDGV 171
Query: 72 PNGTLLIENVQKDHDRGVYWCTATNKQGRS----SSQNVHISVTG---APFVRPMGNVSA 124
I + G Y C + S + I VTG P +
Sbjct: 172 SKANFSIGPMMLAL-AGTYRCYGSVTHTPYQLSAPSDPLDIVVTGPYEKPSLSAQPGPKV 230
Query: 125 IAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCT 184
AGE + L C ++G + + G Y C
Sbjct: 231 QAGESVTLSCSSRSSYDMYHLSREGGAHERRLPAVRKVNRTFQADFPLGPATHGGTYRCF 290
Query: 185 A--TNKQGRSS--SQNVHISVTVPP 205
+ S S + +SVT P
Sbjct: 291 GSFRHSPYEWSDPSDPLLVSVTGNP 315
>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural
cytotoxicity receptor, NK cell receptor, immunoglobulin
fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4
Length = 242
Score = 54.9 bits (132), Expect = 3e-09
Identities = 37/235 (15%), Positives = 61/235 (25%), Gaps = 29/235 (12%)
Query: 12 QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVF 71
+ V++ C +G A DR + RI + +
Sbjct: 16 FMVPKEKQVTICCQGN-YGAVEYQLHFEGSLFAVDRPKPPERINKVK------------- 61
Query: 72 PNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGNVSA----IAG 127
I ++ G Y C + S N+ V + P +V I+G
Sbjct: 62 ----FYIPDMNSRM-AGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISG 116
Query: 128 EPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATN 187
E + C K + + +R + V H RG Y C +
Sbjct: 117 EKVTFYC-RLDTATSMFLLLKEGRSSHV-QRGYGKVQAEFPLGPVTTAH-RGTYRCFGSY 173
Query: 188 KQGRSS--SQNVHISVT-VPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISW 239
S S+ V + VT + P + G W
Sbjct: 174 NNHAWSFPSEPVKLLVTGDIENTSLAPEDPTFPADTWGTYLLTTETGLQKDHALW 228
>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac
muscle, hypertrophic cardiomyopathy, actin-binding, cell
adhesion, disease mutation; NMR {Homo sapiens}
Length = 95
Score = 52.0 bits (125), Expect = 3e-09
Identities = 16/79 (20%), Positives = 30/79 (37%), Gaps = 5/79 (6%)
Query: 115 FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNG---TLLIEN 171
F + +V AG P ++ + WQ+G + + + + G TL +
Sbjct: 11 FSKKPRSVEVAAGSPAVFEAETERAGVK-VRWQRGGSDISASNKYGLATEGTRHTLTVRE 69
Query: 172 VQKDHDRGVYWCTATNKQG 190
V D+G Y A + +
Sbjct: 70 VGPA-DQGSYAVIAGSSKV 87
Score = 39.6 bits (93), Expect = 9e-05
Identities = 14/99 (14%), Positives = 26/99 (26%), Gaps = 20/99 (20%)
Query: 2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPL-AGDRHENKNRIGEARVQ 60
K + G P + + W+ G + A +++ G
Sbjct: 8 VSAFSKKPRSVEVAAGSPAVFEAETER-AGVKVRWQRGGSDISASNKYGLATE-GTRH-- 63
Query: 61 QLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQG 99
TL + V D+G Y A + +
Sbjct: 64 --------------TLTVREVGPA-DQGSYAVIAGSSKV 87
Score = 33.1 bits (76), Expect = 0.016
Identities = 9/48 (18%), Positives = 14/48 (29%), Gaps = 7/48 (14%)
Query: 204 PPKIAPFEFQPDLHS-----GDRAGVQCLVTKGDPPLTISWLKNGLPI 246
P K F S G A + + + + W + G I
Sbjct: 3 PGKKPVSAFSKKPRSVEVAAGSPAVFEAETER--AGVKVRWQRGGSDI 48
>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW-
type/skeletal muscle SLOW-isoform, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Length = 103
Score = 51.9 bits (125), Expect = 4e-09
Identities = 21/100 (21%), Positives = 39/100 (39%), Gaps = 10/100 (10%)
Query: 111 TGAPFVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLP--LNRRQKVFPNG--- 165
+G + + + +A GE + L C V+ ++ W K +++ R ++ G
Sbjct: 6 SGIMVTKQLEDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRVEGKKH 64
Query: 166 TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPP 205
L+IE K D Y T SS + + + P
Sbjct: 65 ILIIEGATKA-DAAEYSVMTTG---GQSSAKLSVDLKSGP 100
Score = 42.3 bits (100), Expect = 1e-05
Identities = 20/111 (18%), Positives = 34/111 (30%), Gaps = 23/111 (20%)
Query: 8 KFIQ----QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLP 63
+ T G V L+C + ++ W +G + K+R R++
Sbjct: 9 MVTKQLEDTTAYCGERVELECEVS-EDDANVKWFKNGEEI---IPGPKSRY---RIRVEG 61
Query: 64 LNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP 114
L+IE K D Y T SS + + + P
Sbjct: 62 KKH--------ILIIEGATKA-DAAEYSVMTTG---GQSSAKLSVDLKSGP 100
Score = 30.0 bits (68), Expect = 0.22
Identities = 9/28 (32%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 219 GDRAGVQCLVTKGDPPLTISWLKNGLPI 246
G+R ++C V+ + + W KNG I
Sbjct: 22 GERVELECEVS--EDDANVKWFKNGEEI 47
>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet,
C2-SET immunoglobulin superfamily, H-bonded G strand
PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4
b.1.1.4 PDB: 1xmw_A
Length = 186
Score = 53.3 bits (127), Expect = 6e-09
Identities = 26/156 (16%), Positives = 45/156 (28%), Gaps = 36/156 (23%)
Query: 124 AIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWC 183
+I+G + L CP+ E++ W+K Q+LP + L++++ + D G Y C
Sbjct: 11 SISGTSVELTCPL--DSDENLKWEKNGQELPQKHDK------HLVLQDFSEVEDSGYYVC 62
Query: 184 TATNKQGR------------------------SSSQNVHISVTVPPKIAPFEFQPDLHSG 219
+ + + K
Sbjct: 63 YTPASNKNTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGD 122
Query: 220 DRAGVQCLVTKGDPPLTISWLKNGLPILSAMGVGRK 255
+ C G TI WLK+G I
Sbjct: 123 GSVLLTC----GLTDKTIKWLKDGSIISPLNATKNT 154
Score = 53.0 bits (126), Expect = 8e-09
Identities = 29/203 (14%), Positives = 53/203 (26%), Gaps = 62/203 (30%)
Query: 16 PGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGT 75
G V L C + ++ W+ +G L + +
Sbjct: 13 SGTSVELTCPL--DSDENLKWEKNGQELPQK------------------HDKH------- 45
Query: 76 LLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGNVSAIAGEP------ 129
L++++ + D G Y C ++ + V A + A +
Sbjct: 46 LVLQDFSEVEDSGYYVCYTPASNK-NTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDG 104
Query: 130 --------------------LYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLI 169
+ L C + ++I W K + K T +
Sbjct: 105 SQTNKAKNLVQVDGSRGDGSVLLTCGL---TDKTIKWLKDGSIISPLNATK----NTWNL 157
Query: 170 ENVQKDHDRGVYWCTATNKQGRS 192
N KD RG Y C +
Sbjct: 158 GNNAKD-PRGTYQCQGAKETSNP 179
Score = 35.2 bits (80), Expect = 0.009
Identities = 16/90 (17%), Positives = 21/90 (23%), Gaps = 27/90 (30%)
Query: 12 QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVF 71
+ V L C T I W DG ++
Sbjct: 117 DGSRGDGSVLLTCGLTDKT---IKWLKDGSIISPLNATKN-------------------- 153
Query: 72 PNGTLLIENVQKDHDRGVYWCTATNKQGRS 101
T + N KD RG Y C +
Sbjct: 154 ---TWNLGNNAKD-PRGTYQCQGAKETSNP 179
>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 104
Score = 51.6 bits (124), Expect = 6e-09
Identities = 18/104 (17%), Positives = 36/104 (34%), Gaps = 14/104 (13%)
Query: 109 SVTGAP--FVRP--MGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPN 164
S + P + P +++ E + L C ++ TW K Q++ + V +
Sbjct: 3 SGSSGPVHILSPQDKVSLTFTTSERVVLTCELSRVDFP-ATWYKDGQKVEESELLVVKMD 61
Query: 165 G---TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPP 205
G L++ + D G + C ++V P
Sbjct: 62 GRKHRLILPEAKVQ-DSGEFECRTEGVSA-----FFGVTVQDPS 99
Score = 40.5 bits (95), Expect = 5e-05
Identities = 16/103 (15%), Positives = 25/103 (24%), Gaps = 21/103 (20%)
Query: 12 QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVF 71
T V L C + P +W DG + G
Sbjct: 20 LTFTTSERVVLTCELSRVDFP-ATWYKDGQKVEESELLVVKMDGRKH------------- 65
Query: 72 PNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP 114
L++ + D G + C S+ V + P
Sbjct: 66 ---RLILPEAKVQ-DSGEFECRTEG---VSAFFGVTVQDPSGP 101
Score = 32.0 bits (73), Expect = 0.042
Identities = 8/45 (17%), Positives = 18/45 (40%), Gaps = 4/45 (8%)
Query: 204 PPKIAPFEFQPDLH--SGDRAGVQCLVTKGDPPLTISWLKNGLPI 246
P I + + L + +R + C ++ +W K+G +
Sbjct: 8 PVHILSPQDKVSLTFTTSERVVLTCELS--RVDFPATWYKDGQKV 50
>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor,
two-domain structure, V-SET, C2-SET, IG-like domain,
6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens}
PDB: 2zg3_A* 2zg2_A
Length = 214
Score = 53.3 bits (127), Expect = 8e-09
Identities = 32/212 (15%), Positives = 70/212 (33%), Gaps = 34/212 (16%)
Query: 15 QPGPPVSLKCIAT-------GNPTPHISWKLDGYPLAGD---RHENKNRIGEARVQ---Q 61
Q G V + C + +P ++ W DG N +R + Q +
Sbjct: 13 QEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFR 72
Query: 62 LPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTA-TNKQGRSSSQNVHISVT-----GAPF 115
L + ++K N +L I + + D G Y+ + + S Q +++ P
Sbjct: 73 LLGDVQKK---NCSLSIGDARM-EDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPD 128
Query: 116 VRPMGNVSAIAGEPLYLGCPVA----GYPIESITWQKGVQQLPLNRRQKVFPNGTLLIEN 171
+ + + + G P L C + P + +W + L
Sbjct: 129 IHFLEPLES--GRPTRLSCSLPGSCEAGPPLTFSWTGNALSPLDPE----TTRSSELTLT 182
Query: 172 VQKDHDRGVYWCTATNKQGRSSSQ-NVHISVT 202
+ + C + + +++ V ++V+
Sbjct: 183 PRPEDHGTNLTCQMKRQGAQVTTERTVQLNVS 214
Score = 45.2 bits (106), Expect = 6e-06
Identities = 23/91 (25%), Positives = 35/91 (38%), Gaps = 7/91 (7%)
Query: 164 NGTLLIENVQKDHDRGVYWCTATNKQGRSSS---QNVHISVTVPPKIAPFEFQPDLHSGD 220
N +L I + + D G Y+ + S +++ VT + F L SG
Sbjct: 81 NCSLSIGDARM-EDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHFLEPLESGR 139
Query: 221 RAGVQCLVT---KGDPPLTISWLKNGLPILS 248
+ C + + PPLT SW N L L
Sbjct: 140 PTRLSCSLPGSCEAGPPLTFSWTGNALSPLD 170
Score = 38.3 bits (88), Expect = 0.001
Identities = 12/107 (11%), Positives = 26/107 (24%), Gaps = 28/107 (26%)
Query: 10 IQQTLQPGPPVSLKCIAT----GNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLN 65
+ L+ G P L C P SW +
Sbjct: 131 FLEPLESGRPTRLSCSLPGSCEAGPPLTFSWTGNALSPLDPE------------------ 172
Query: 66 RRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQ-NVHISVT 111
+ L + + C + + +++ V ++V+
Sbjct: 173 -----TTRSSELTLTPRPEDHGTNLTCQMKRQGAQVTTERTVQLNVS 214
>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 103
Score = 51.2 bits (123), Expect = 9e-09
Identities = 20/85 (23%), Positives = 33/85 (38%), Gaps = 6/85 (7%)
Query: 111 TGAP-FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNG---T 166
+GA F + N+ C P ++TW+KG+ +L + + + G
Sbjct: 6 SGANCFTEELTNLQVEEKGTAVFTCKTEH-PAATVTWRKGLLELRASGKHQPSQEGLTLR 64
Query: 167 LLIENVQKDHDRGVYWCTATNKQGR 191
L I ++K D Y C Q R
Sbjct: 65 LTISALEKA-DSDTYTCDIGQAQSR 88
Score = 41.2 bits (97), Expect = 3e-05
Identities = 17/98 (17%), Positives = 28/98 (28%), Gaps = 24/98 (24%)
Query: 8 KFIQ----QTLQPGPPVSLKCIATGNPTPHISWKLDGYPL-AGDRHENKNRIGEARVQQL 62
F + ++ C T +P ++W+ L A +H+ G
Sbjct: 10 CFTEELTNLQVEEKGTAVFTCK-TEHPAATVTWRKGLLELRASGKHQPSQE-GLTL---- 63
Query: 63 PLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGR 100
L I ++K D Y C Q R
Sbjct: 64 ------------RLTISALEKA-DSDTYTCDIGQAQSR 88
Score = 29.2 bits (66), Expect = 0.47
Identities = 7/28 (25%), Positives = 10/28 (35%), Gaps = 2/28 (7%)
Query: 219 GDRAGVQCLVTKGDPPLTISWLKNGLPI 246
A C P T++W K L +
Sbjct: 23 KGTAVFTCKTE--HPAATVTWRKGLLEL 48
>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 113
Score = 51.3 bits (123), Expect = 1e-08
Identities = 21/104 (20%), Positives = 40/104 (38%), Gaps = 14/104 (13%)
Query: 109 SVTGAP----FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPN 164
S T + V+A+ E + L C + P + W K +++ + +
Sbjct: 6 SGTDVSSWIVYPSGKVYVAAVRLERVVLTCEL-CRPWAEVRWTKDGEEVVESPALLLQKE 64
Query: 165 G---TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPP 205
L++ VQ + D G Y C ++ + ++VT PP
Sbjct: 65 DTVRRLVLPAVQLE-DSGEYLCEIDDESASFT-----VTVTEPP 102
Score = 41.7 bits (98), Expect = 3e-05
Identities = 18/109 (16%), Positives = 30/109 (27%), Gaps = 23/109 (21%)
Query: 12 QTLQPGPPVSLKCIATGNPTPHISWKLDGYPL-AGDRHENKNRIGEARVQQLPLNRRQKV 70
V L C P + W DG + + R
Sbjct: 23 VAAVRLERVVLTCEL-CRPWAEVRWTKDGEEVVESPALLLQKE-DTVR------------ 68
Query: 71 FPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPM 119
L++ VQ + D G Y C ++ S+S V ++ +
Sbjct: 69 ----RLVLPAVQLE-DSGEYLCEIDDE---SASFTVTVTEPPVRIIYSG 109
Score = 32.8 bits (75), Expect = 0.026
Identities = 9/50 (18%), Positives = 18/50 (36%), Gaps = 5/50 (10%)
Query: 200 SVTVPPK-IAPFEFQPDLHS--GDRAGVQCLVTKGDPPLTISWLKNGLPI 246
S T I + + + +R + C + P + W K+G +
Sbjct: 6 SGTDVSSWIVYPSGKVYVAAVRLERVVLTCEL--CRPWAEVRWTKDGEEV 53
>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor,
adhesion, structural genomics, NEW YORK STR genomics
research consortium, nysgrc; 1.70A {Homo sapiens} PDB:
3rq3_A 3udw_A* 3ucr_A
Length = 117
Score = 51.1 bits (122), Expect = 1e-08
Identities = 18/107 (16%), Positives = 35/107 (32%), Gaps = 16/107 (14%)
Query: 116 VRPMGNVSAIAGEPLYLGC--PVAGYPIESITWQKGVQQL-------------PLNRRQK 160
+ GN+SA G + L C + + W++ Q L R
Sbjct: 7 IETTGNISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVA 66
Query: 161 VFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKI 207
P L ++++ + D G Y+C + + + + V
Sbjct: 67 PGPGLGLTLQSLTVN-DTGEYFCIYHTYPDGTYTGRIFLEVLESSVA 112
Score = 43.0 bits (101), Expect = 9e-06
Identities = 15/107 (14%), Positives = 35/107 (32%), Gaps = 9/107 (8%)
Query: 13 TLQPGPPVSLKCIATGNPTP--HISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKV 70
+ + G + L+C + ++W+ LA + I R
Sbjct: 14 SAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISP------SFKDRVAP 67
Query: 71 FPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVR 117
P L ++++ + D G Y+C + + + + V +
Sbjct: 68 GPGLGLTLQSLTVN-DTGEYFCIYHTYPDGTYTGRIFLEVLESSVAE 113
>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein,
immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG;
2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB:
1p9m_C 2arw_A
Length = 325
Score = 53.7 bits (128), Expect = 1e-08
Identities = 23/134 (17%), Positives = 43/134 (32%), Gaps = 21/134 (15%)
Query: 108 ISVTGAP-FVRPMGNVSAIAGEPLYLGCPVA-GYPIESITWQKGVQQLPLNRRQKVFPNG 165
++ P G ++++ G+ + L CP ++ W + +
Sbjct: 1 LAPRRCPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGR 60
Query: 166 TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQ 225
LL+ +VQ D G Y C + + VH+ V VPP + +
Sbjct: 61 RLLLRSVQLH-DSGNYSCYRAGRPAGT----VHLLVDVPP--------------EEPQLS 101
Query: 226 CLVTKGDPPLTISW 239
C + W
Sbjct: 102 CFRKSPLSNVVCEW 115
Score = 52.6 bits (125), Expect = 3e-08
Identities = 28/219 (12%), Positives = 49/219 (22%), Gaps = 38/219 (17%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIA-TGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQ 61
P T PG V+L C + W L
Sbjct: 7 PAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRK-------------------PA 47
Query: 62 LPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGN 121
+ + LL+ +VQ D G Y C + + VH+ V P
Sbjct: 48 AGSHPSRWAGMGRRLLLRSVQLH-DSGNYSCYRAGRPAGT----VHLLVDVPP--EEPQL 100
Query: 122 VSAIAGEPLYLGC-----PVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIEN---VQ 173
+ C +++ + Q P Q+ + +
Sbjct: 101 SCFRKSPLSNVVCEWGPRSTPSLTTKAVLLVRKFQNSPAEDFQEPCQYSQESQKFSCQLA 160
Query: 174 KDHDRGVY---WCTATNKQGRSSSQNVHISVTVPPKIAP 209
+ + G S+ + P
Sbjct: 161 VPEGDSSFYIVSMCVASSVGSKFSKTQTFQGCGILQPDP 199
Score = 30.2 bits (67), Expect = 0.62
Identities = 8/46 (17%), Positives = 14/46 (30%), Gaps = 1/46 (2%)
Query: 203 VPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISWLKNGLPILS 248
P + L GD + C + + T+ W+ S
Sbjct: 6 CPAQEVARGVLTSL-PGDSVTLTCPGVEPEDNATVHWVLRKPAAGS 50
>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane,
disulfide bond, glycoprotein, immunoglobulin domain,
membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A
{Homo sapiens}
Length = 589
Score = 53.9 bits (129), Expect = 1e-08
Identities = 23/210 (10%), Positives = 56/210 (26%), Gaps = 33/210 (15%)
Query: 12 QTLQPGPPVSLKCI-------ATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPL 64
+Q + C+ +I WK + + + +++ NR
Sbjct: 13 PVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIINRTA--------- 63
Query: 65 NRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGNVSA 124
++ ++ + + + ++ + I P N+S
Sbjct: 64 ---------SSVTFTDIASLNIQLTCNILTFGQLEQNVYG-ITIISGLPP--EKPKNLSC 111
Query: 125 IAGEPLYLGC----PVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDH-DRG 179
I E + C + + T + + T + +
Sbjct: 112 IVNEGKKMRCEWDGGRETHLETNFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNI 171
Query: 180 VYWCTATNKQGRSSSQNVHISVTVPPKIAP 209
W A N G+ +S +++ K P
Sbjct: 172 EVWVEAENALGKVTSDHINFDPVYKVKPNP 201
Score = 35.8 bits (82), Expect = 0.012
Identities = 16/105 (15%), Positives = 26/105 (24%), Gaps = 10/105 (9%)
Query: 10 IQQTLQPGPPVSLKCIATGNPTPHISWKL---DGYPLAGDRHENKNRIGEARVQQLPLNR 66
I L P P +L CI W A +
Sbjct: 97 IISGLPPEKPKNLSCIVNEGKKMRCEWDGGRETHLETNFTLKSEWATHKFADCKAKRDTP 156
Query: 67 RQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVT 111
T+ N++ W A N G+ +S +++
Sbjct: 157 TSCTVDYSTVYFVNIE-------VWVEAENALGKVTSDHINFDPV 194
Score = 28.0 bits (62), Expect = 3.3
Identities = 17/97 (17%), Positives = 29/97 (29%), Gaps = 10/97 (10%)
Query: 129 PLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNK 188
P + Y + W+ +Q +N T L V +DR + T N
Sbjct: 333 PFEANGKILDYEVTLTRWKSHLQNYTVN--------ATKLT--VNLTNDRYLATLTVRNL 382
Query: 189 QGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQ 225
G+S + + I P + V+
Sbjct: 383 VGKSDAAVLTIPACDFQATHPVMDLKAFPKDNMLWVE 419
Score = 27.7 bits (61), Expect = 5.0
Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 13/136 (9%)
Query: 81 VQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGNVSAIAGEPLYL------GC 134
V +DR + T N G+S + + I P+ ++ A + +
Sbjct: 366 VNLTNDRYLATLTVRNLVGKSDAAVLTIPACDFQATHPVMDLKAFPKDNMLWVEWTTPRE 425
Query: 135 PVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCT--ATNKQGRS 192
V Y +E + +++ + T L N+ + Y T G
Sbjct: 426 SVKKYILEWCVLSDKAPCITDWQQEDGTVHRTYLRGNLAESKC---YLITVTPVYADGPG 482
Query: 193 SSQNVHISV--TVPPK 206
S +++ + P K
Sbjct: 483 SPESIKAYLKQAPPSK 498
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune
system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A
4f8q_A
Length = 226
Score = 52.0 bits (124), Expect = 2e-08
Identities = 32/203 (15%), Positives = 51/203 (25%), Gaps = 20/203 (9%)
Query: 20 VSLKCIATGNPTP---HISWKLDGYPLA----GDRHENKNRIGEARVQQLPLNRRQKVFP 72
L C + + W D E ++R + + R
Sbjct: 22 ADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAG 81
Query: 73 NGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGNVSAIAGEPLYL 132
L I NV D G Y C + G + + A +V ++L
Sbjct: 82 KAALRIHNVTAS-DSGKYLCYFQD--GDFYEKALVELKVAALGSDLHVDVKGYKDGGIHL 138
Query: 133 GCPVAG-YPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQ-----KDHDRGVYWCTAT 186
C G YP I W + V +G L V + CT
Sbjct: 139 ECRSTGWYPQPQIQWSNNKGENIPTVEAPVVADGVGLY-AVAASVIMRGSSGEGVSCTIR 197
Query: 187 NKQGRSSSQNVHISVTVPPKIAP 209
+ S+++
Sbjct: 198 SSLL---GLEKTASISIADPFFR 217
Score = 47.4 bits (112), Expect = 9e-07
Identities = 31/171 (18%), Positives = 47/171 (27%), Gaps = 35/171 (20%)
Query: 106 VHISVTGAPFVRPMGNVSAIAGEPLYLGC---PVAGYPIESITWQK-------------- 148
+ SV G P G + A+ GE L C P + W
Sbjct: 3 LQFSVLG-----PSGPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGK 57
Query: 149 ---GVQQLPLNRRQKVFPNG------TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHI 199
Q P R + +G L I NV D G Y C + + +
Sbjct: 58 EVEDRQSAPYRGRTSILRDGITAGKAALRIHNVTAS-DSGKYLCYFQDG---DFYEKALV 113
Query: 200 SVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSAM 250
+ V + + ++C T P I W N + +
Sbjct: 114 ELKVAALGSDLHVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIPTV 164
>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation
marker blast-1, BCM1 surface antigen, leukocyte antigen
MEM-102, TCT.1; NMR {Homo sapiens}
Length = 121
Score = 49.9 bits (119), Expect = 4e-08
Identities = 19/111 (17%), Positives = 35/111 (31%), Gaps = 17/111 (15%)
Query: 111 TGAPFVRPMGNVSAIAGEPLYLGCPV-AGYPIESITWQKGVQQLPL-------------- 155
+G+ + +++ ++G + L + +TW Q +
Sbjct: 3 SGSSGQGHLVHMTVVSGSNVTLNISESLPENYKQLTWFYTFDQKIVEWDSRKSKYFESKF 62
Query: 156 -NRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPP 205
R + +G L I VQK D Y K G + + V P
Sbjct: 63 KGRVRLDPQSGALYISKVQK-EDNSTYIMRVLKKTGNEQEWKIKLQVLDPV 112
Score = 43.8 bits (103), Expect = 4e-06
Identities = 18/95 (18%), Positives = 32/95 (33%), Gaps = 6/95 (6%)
Query: 17 GPPVSLKCIAT-GNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGT 75
G V+L + ++W + K++ E++ + R + +G
Sbjct: 19 GSNVTLNISESLPENYKQLTWFYTFDQKIVEWDSRKSKYFESKFK----GRVRLDPQSGA 74
Query: 76 LLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISV 110
L I VQK D Y K G + + V
Sbjct: 75 LYISKVQK-EDNSTYIMRVLKKTGNEQEWKIKLQV 108
>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion;
2.40A {Homo sapiens}
Length = 145
Score = 50.2 bits (119), Expect = 4e-08
Identities = 21/118 (17%), Positives = 39/118 (33%), Gaps = 15/118 (12%)
Query: 101 SSSQNVHISVTGAPFVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQK 160
I+++ + + +AG + L C V + S+ W QQ ++
Sbjct: 27 DDKAMADINLSQDDSQPWTSDETVVAGGTVVLKCQVKDHEDSSLQWSNPAQQTLYFGEKR 86
Query: 161 VFPNG------------TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPK 206
+ ++ I NV D G Y C+ R++ V V P+
Sbjct: 87 ALRDNRIQLVTSTPHELSISISNVALA-DEGEYTCSIFTMPVRTAKSLVT--VLGIPQ 141
Score = 42.5 bits (99), Expect = 2e-05
Identities = 19/100 (19%), Positives = 34/100 (34%), Gaps = 10/100 (10%)
Query: 12 QTLQPGPPVSLKCIATGNPTPHISW-KLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKV 70
+T+ G V LKC + + W L + + R+Q + +
Sbjct: 48 ETVVAGGTVVLKCQVKDHEDSSLQWSNPAQQTLYFGEKRA---LRDNRIQLVTSTPHEL- 103
Query: 71 FPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISV 110
++ I NV D G Y C+ R++ V +
Sbjct: 104 ----SISISNVALA-DEGEYTCSIFTMPVRTAKSLVTVLG 138
>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A*
1ow0_C*
Length = 218
Score = 51.0 bits (122), Expect = 5e-08
Identities = 30/199 (15%), Positives = 56/199 (28%), Gaps = 29/199 (14%)
Query: 16 PGPPVSLKCIAT-GNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNG 74
V ++C A + + R +
Sbjct: 22 LDGSVKIQCQAIREAYLTQLMIIKNSTYREIGRRLKFWNETDPE---------------- 65
Query: 75 TLLIENVQKDHDRGVYWCTATNKQGRS-SSQNVHISVTGA---PFVRPMGNVSAIAGEPL 130
+I+++ + G Y C R S + + VTG PF+ + + GE +
Sbjct: 66 -FVIDHMDANK-AGRYQCQYRIGHYRFRYSDTLELVVTGLYGKPFLSADRGLVLMPGENI 123
Query: 131 YLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQG 190
L C A P + + K + + Q + V + G+Y C +
Sbjct: 124 SLTCSSAHIPFDRFSLAKEGELSLP-QHQSGEHPANFSLGPVDLNV-SGIYRCYGWYNRS 181
Query: 191 R----SSSQNVHISVTVPP 205
S + + VT
Sbjct: 182 PYLWSFPSNALELVVTDSI 200
Score = 36.4 bits (84), Expect = 0.004
Identities = 19/107 (17%), Positives = 31/107 (28%), Gaps = 25/107 (23%)
Query: 12 QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVF 71
L PG +SL C + P S +G +L L + Q
Sbjct: 115 LVLMPGENISLTCSSAHIPFDRFSLAKEG--------------------ELSLPQHQSGE 154
Query: 72 PNGTLLIENVQKDHDRGVYWCTATNKQGR----SSSQNVHISVTGAP 114
+ V + G+Y C + S + + VT +
Sbjct: 155 HPANFSLGPVDLNV-SGIYRCYGWYNRSPYLWSFPSNALELVVTDSI 200
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 52.0 bits (124), Expect = 8e-08
Identities = 39/228 (17%), Positives = 68/228 (29%), Gaps = 81/228 (35%)
Query: 66 RRQKVFPNGTLLIENVQK--DHDRGV----------------YWCTATNKQGRSSSQNVH 107
R + +PN +L ++ +++ GV + TN + Q V
Sbjct: 309 RCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQ-VE 367
Query: 108 ISVTGAP--FVRPMGNVSAIAGEP--LYLGCPVAGYPIESITWQKGVQQ--LPLNRRQKV 161
IS+ V ++G P LY + G+ Q +P + R+
Sbjct: 368 ISLVNGAKNLV--------VSGPPQSLYGLNLT----LRKAKAPSGLDQSRIPFSERKLK 415
Query: 162 FPNGTLLI-------------ENVQKDHDRG------------VYWCTATNKQGRSSSQN 196
F N L + + + KD + VY T R S +
Sbjct: 416 FSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVY-DTFDGSDLRVLSGS 474
Query: 197 -----VHISVTVP---PKIAPF------EFQPDLHSGDRAGVQCLVTK 230
V + +P F +F P G +G+ L +
Sbjct: 475 ISERIVDCIIRLPVKWETTTQFKATHILDFGP----GGASGLGVLTHR 518
Score = 29.2 bits (65), Expect = 1.8
Identities = 35/206 (16%), Positives = 52/206 (25%), Gaps = 94/206 (45%)
Query: 17 GPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIG--EARVQQLPLNRRQKVFPNG 74
GPP SL Y L + K G ++R+ P + R+ F N
Sbjct: 381 GPPQSL------------------YGLNLTLRKAKAPSGLDQSRI---PFSERKLKFSNR 419
Query: 75 TLLI-------------ENVQKDHDRG------------VYWCTATNKQGRSSSQNVHIS 109
L + + + KD + VY T R S ++
Sbjct: 420 FLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVY-DTFDGSDLRVLSGSISER 478
Query: 110 VTGAPFVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLP---LNRRQKVF-PNG 165
+ V I P+ W+ Q L F P G
Sbjct: 479 I-----------VDCIIRLPVK--------------WETTTQFKATHIL-----DFGPGG 508
Query: 166 TLLIENVQKDHDRGVYWCTATNKQGR 191
+ + T NK G
Sbjct: 509 ASGLGVL-----------THRNKDGT 523
>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C,
C-protein, skeletal muscle fast- isoform, MYBPCF,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 101
Score = 48.1 bits (115), Expect = 8e-08
Identities = 18/90 (20%), Positives = 32/90 (35%), Gaps = 11/90 (12%)
Query: 109 SVTGAP--FVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLP----LNRRQKVF 162
S + P V P+ + G+ + + V + W K +L R +
Sbjct: 3 SGSSGPVLIVTPLEDQQVFVGDRVEMAVEV-SEEGAQVMWMKNGVELTREDSFKARYRFK 61
Query: 163 PNG---TLLIENVQKDHDRGVYWCTATNKQ 189
+G L+ +V ++ DRG Y Q
Sbjct: 62 KDGKRHILIFSDVVQE-DRGRYQVITNGGQ 90
Score = 43.9 bits (104), Expect = 3e-06
Identities = 16/95 (16%), Positives = 30/95 (31%), Gaps = 18/95 (18%)
Query: 8 KFIQ----QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLP 63
+ Q + G V + + + W +G L + +AR +
Sbjct: 10 LIVTPLEDQQVFVGDRVEMAVEVS-EEGAQVMWMKNGVELTREDSF------KARYRFKK 62
Query: 64 LNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQ 98
+R L+ +V ++ DRG Y Q
Sbjct: 63 DGKRH------ILIFSDVVQE-DRGRYQVITNGGQ 90
Score = 31.1 bits (71), Expect = 0.090
Identities = 8/28 (28%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 219 GDRAGVQCLVTKGDPPLTISWLKNGLPI 246
GDR + V+ + + W+KNG+ +
Sbjct: 23 GDRVEMAVEVS--EEGAQVMWMKNGVEL 48
>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion
protein, immunoglobulin fold, I-SET fold, cell adhesion
glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
PDB: 1bqs_A*
Length = 210
Score = 49.9 bits (118), Expect = 1e-07
Identities = 22/148 (14%), Positives = 41/148 (27%), Gaps = 30/148 (20%)
Query: 13 TLQPGPPVSLKCIATG-NPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVF 71
+ G L C + + W+ L + +
Sbjct: 18 AVALGASRQLTCRLACADRGASVQWRGLDTSLGAVQSDT--------------------- 56
Query: 72 PNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGNVSAIAGEPLY 131
L + N G C + GR+ V + V P + + + G+P
Sbjct: 57 GRSVLTVRNASLSAA-GTRVCVGSC-GGRTFQHTVQLLVYAFPNQLTVSPAALVPGDPE- 113
Query: 132 LGCPVAG-YPIE----SITWQKGVQQLP 154
+ C P++ S + G Q+L
Sbjct: 114 VACTAHKVTPVDPNALSFSLLVGGQELE 141
>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain,
glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens}
PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A
1f6a_B 1g84_A
Length = 323
Score = 49.7 bits (118), Expect = 2e-07
Identities = 40/257 (15%), Positives = 79/257 (30%), Gaps = 35/257 (13%)
Query: 12 QTLQPGPPVSLKCIATG-NPTPH-ISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQK 69
P + L C+ +G P I+W DG + D + + +
Sbjct: 19 GGGHFPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVD------------LSTASTTQEGE 66
Query: 70 VFPNGTLLIENVQKDHDRGVYWCTATNK----QGRSSSQNVHISVTGAPFVRPMGNVSAI 125
+ + L + + Y C T + + + + ++
Sbjct: 67 LASTQSELTLSQKHWLSDRTYTCQVTYQGHTFEDSTKKCADSNPRGVSAYLSRPSPFDLF 126
Query: 126 AGEPLYLGCPVAGYPIE----SITW--QKGVQQLPLNRRQKVFPNGT-----LLIENVQK 174
+ + C V +TW G R+++ NGT L +
Sbjct: 127 IRKSPTITCLVVDLAPSKGTVQLTWSRASGKPVNHSTRKEEKQRNGTLTVTSTLPVGTRD 186
Query: 175 DHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAP--FEFQP--DLHSGDRAGVQCLVTK 230
+ Y C T+ + + T P+ AP + F S D+ + CL+
Sbjct: 187 WIEGETYQCRVTH-PHLPRALMRSTTKTSGPRAAPEVYAFATPEWPGSRDKRTLACLIQN 245
Query: 231 GDPP-LTISWLKNGLPI 246
P +++ WL N + +
Sbjct: 246 FMPEDISVQWLHNEVQL 262
Score = 30.0 bits (67), Expect = 0.70
Identities = 12/50 (24%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Query: 202 TVPPKIAPFEFQPD--LHSGDRAGVQCLVTKGDP-PLTISWLKNGLPILS 248
PP + + D H + CLV+ P + I+WL++G +
Sbjct: 5 FTPPTVKILQSSCDGGGHFPPTIQLLCLVSGYTPGTIQITWLEDGQVMDV 54
>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform
1; immunoglobulin-like fold, immune system; 1.85A {Homo
sapiens}
Length = 196
Score = 48.7 bits (116), Expect = 3e-07
Identities = 36/203 (17%), Positives = 65/203 (32%), Gaps = 32/203 (15%)
Query: 12 QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVF 71
+ G V+++C T +G P D +A
Sbjct: 14 SVISRGNSVTIRCQGT-LEAQEYRLVKEGSPEPWDTQNPLEPKNKA-------------- 58
Query: 72 PNGTLLIENVQKDHDRGVYWCTATNKQGRS-SSQNVHISVTGA---PFVRPMGNVSAIAG 127
I ++ + H G Y C + G S S + + VTG P + + + +G
Sbjct: 59 ---RFSIPSMTEHH-AGRYRCYYYSPAGWSEPSDPLELVVTGFYNKPTLSALPSPVVTSG 114
Query: 128 EPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNG----TLLIENVQKDHDRGVYWC 183
E + L C I ++G +L ++ P+G + V H R + C
Sbjct: 115 ENVTLQCGSRLRFDRFILTEEGDHKLSWTLDSQLTPSGQFQALFPVGPVTPSH-RWMLRC 173
Query: 184 TATNKQGR----SSSQNVHISVT 202
+ + S + I V+
Sbjct: 174 YGSRRHILQVWSEPSDLLEIPVS 196
Score = 32.5 bits (74), Expect = 0.087
Identities = 23/127 (18%), Positives = 38/127 (29%), Gaps = 9/127 (7%)
Query: 127 GEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGT--LLIENVQKDHDRGVYWCT 184
G + + C + K P + + + P I ++ + H G Y C
Sbjct: 19 GNSVTIRC-QGTLEAQEYRLVKEGSPEPWDTQNPLEPKNKARFSIPSMTEHH-AGRYRCY 76
Query: 185 ATNKQGRS-SSQNVHISVTVPPKIAPFEFQPDLH--SGDRAGVQCLVTKGDPPLTISWLK 241
+ G S S + + VT P SG+ +QC +
Sbjct: 77 YYSPAGWSEPSDPLELVVTGFYNKPTLSALPSPVVTSGENVTLQCGS--RLRFDRFILTE 134
Query: 242 NGLPILS 248
G LS
Sbjct: 135 EGDHKLS 141
>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG,
inhibitory receptor, disulfide, immune system; 1.70A
{Homo sapiens}
Length = 196
Score = 47.5 bits (113), Expect = 7e-07
Identities = 34/208 (16%), Positives = 65/208 (31%), Gaps = 39/208 (18%)
Query: 13 TLQPGP------PVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNR 66
+PG V++ C T + P DR +A
Sbjct: 9 WAEPGSVISWGNSVTIWCQGT-LEAREYRLDKEESPAPWDRQNPLEPKNKA--------- 58
Query: 67 RQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRS-SSQNVHISVTG---APFVRPMGNV 122
I ++ +D+ G Y C + G S S + + +TG P + + +
Sbjct: 59 --------RFSIPSMTEDY-AGRYRCYYRSPVGWSQPSDPLELVMTGAYSKPTLSALPSP 109
Query: 123 SAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNG----TLLIENVQKDHDR 178
+G+ + L C + P+++ K PL + + V H
Sbjct: 110 LVTSGKSVTLLC-QSRSPMDTFLLCKERAAHPLLCLRSEHGAQQHQAEFPMSPVTSVH-G 167
Query: 179 GVYWCTATNKQGR----SSSQNVHISVT 202
G Y C +++ S + + V+
Sbjct: 168 GTYRCFSSHGFSHYLLSHPSDPLELIVS 195
Score = 31.3 bits (71), Expect = 0.18
Identities = 17/105 (16%), Positives = 30/105 (28%), Gaps = 21/105 (20%)
Query: 12 QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVF 71
+ G V+L C + + K E + + Q F
Sbjct: 109 PLVTSGKSVTLLCQSRSPMDTFLLCK-----------ERAAHPLLCLRSEHGAQQHQAEF 157
Query: 72 PNGTLLIENVQKDHDRGVYWCTATNKQGR----SSSQNVHISVTG 112
P + V H G Y C +++ S + + V+G
Sbjct: 158 P-----MSPVTSVH-GGTYRCFSSHGFSHYLLSHPSDPLELIVSG 196
>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor,
immune system, IG domain, cytotoxicity, C2-type IG-like
domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 188
Score = 47.1 bits (112), Expect = 9e-07
Identities = 35/199 (17%), Positives = 58/199 (29%), Gaps = 32/199 (16%)
Query: 12 QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVF 71
+ V++ C +G A DR + RI + +
Sbjct: 13 FMVPKEKQVTICCQGN-YGAVEYQLHFEGSLFAVDRPKPPERINKVK------------- 58
Query: 72 PNGTLLIENVQKDHDRGVYWCTATNKQGRS-SSQNVHISVTGAPF-----VRPMGNVSAI 125
I ++ G Y C + S S + + VT V P V
Sbjct: 59 ----FYIPDMNSRM-AGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVI-- 111
Query: 126 AGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTA 185
+GE + C + + ++G +R + V H RG Y C
Sbjct: 112 SGEKVTFYCRLDTATSMFLLLKEGRSSHV--QRGYGKVQAEFPLGPVTTAH-RGTYRCFG 168
Query: 186 TNKQGRSS--SQNVHISVT 202
+ S S+ V + VT
Sbjct: 169 SYNNHAWSFPSEPVKLLVT 187
>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell,
HLA, major histocompatibility complex class I (MHC class
I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 257
Score = 46.9 bits (111), Expect = 2e-06
Identities = 41/253 (16%), Positives = 74/253 (29%), Gaps = 40/253 (15%)
Query: 13 TLQPGP------PVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNR 66
PGP V L+C + + L +R G+ + +
Sbjct: 11 LAHPGPLVKSEETVILQC---WSDVRFQHFLL-------------HREGKFKDTLHLIGE 54
Query: 67 RQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRS----SSQNVHISVTGA---PFVRPM 119
I + +D G Y C + S + I +TG P +
Sbjct: 55 HHDGVSKANFSIGPMMQDL-AGTYRCYGSVTHSPYQLSAPSDPLDIVITGLYEKPSLSAQ 113
Query: 120 GNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIE-NVQKDHDR 178
+ +AGE + L C + + + + NGT + +
Sbjct: 114 PGPTVLAGESVTLSC-SSRSSYDMYHLSREGEAHERRFSAGPKVNGTFQADFPLGPATHG 172
Query: 179 GVYWCTA--TNKQGRSS--SQNVHISVTVPPKI-APFEFQPDLHSGDRAGVQCLVTK--- 230
G Y C + S S + +SVT P P +P +G+ + +
Sbjct: 173 GTYRCFGSFRDSPYEWSNSSDPLLVSVTGNPSNSWPSPTEPSSETGNPRHLHAAAEQKLI 232
Query: 231 GDPPLTISWLKNG 243
+ L + + G
Sbjct: 233 SEEDLNLDLVPRG 245
Score = 29.6 bits (66), Expect = 1.0
Identities = 26/129 (20%), Positives = 38/129 (29%), Gaps = 25/129 (19%)
Query: 12 QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVF 71
T+ G V+L C D Y L +R GEA ++ +
Sbjct: 116 PTVLAGESVTLSC--------SSRSSYDMYHL--------SREGEAHERRFSAGPKVNGT 159
Query: 72 PNGTLLIENVQKDHDRGVYWCTA--TNKQGRSS--SQNVHISVTGAPFVRPMGNV--SAI 125
+ G Y C + S S + +SVTG P S+
Sbjct: 160 FQADFPLGPAT---HGGTYRCFGSFRDSPYEWSNSSDPLLVSVTGNPSNSWPSPTEPSSE 216
Query: 126 AGEPLYLGC 134
G P +L
Sbjct: 217 TGNPRHLHA 225
>3pv7_A B7-H6, IG-like domain-containing protein
DKFZP686O24166/DKFZP686I21167; NK cell receptor,
receptor-ligand complex, immune system; HET: NAG; 2.00A
{Homo sapiens} PDB: 3pv6_A*
Length = 248
Score = 47.0 bits (111), Expect = 2e-06
Identities = 14/110 (12%), Positives = 32/110 (29%), Gaps = 4/110 (3%)
Query: 135 PVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSS 194
V + + ++ + + +L + +Q + + G Y C ++
Sbjct: 52 EVKVFEFFGDHQEAFRPGAIVSPWRLKSGDASLRLPGIQLE-EAGEYRCEVVVTPLKAQ- 109
Query: 195 QNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDP-PLTISWLKNG 243
V + V P + C + P + I+W K
Sbjct: 110 GTVQLEVVASPASRLLL-DQVGMKENEDKYMCESSGFYPEAINITWEKQT 158
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein
binding; HET: NAG NDG; 2.40A {Homo sapiens}
Length = 590
Score = 47.3 bits (111), Expect = 2e-06
Identities = 20/91 (21%), Positives = 30/91 (32%), Gaps = 2/91 (2%)
Query: 98 QGRSSSQNVHISVTGAPFVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNR 157
Q + ++ P P+ VS YL CP+ + +W+
Sbjct: 486 QSINPAEPHKECPNPKPDKAPLQKVSLAPNSRYYLSCPMES-RHATYSWRHKENVEQSCE 544
Query: 158 RQKVFPNGTLLIENVQKDHDRGVYWCTATNK 188
PN L IEN+ G Y+C A
Sbjct: 545 PGHQSPNCILFIENLTAQ-QYGHYFCEAQEG 574
Score = 35.0 bits (79), Expect = 0.024
Identities = 17/111 (15%), Positives = 25/111 (22%), Gaps = 21/111 (18%)
Query: 2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQ 61
+ +L P L C SW+
Sbjct: 500 PKPDKAPLQKVSLAPNSRYYLSCPMESRH-ATYSWRHKE-------------------NV 539
Query: 62 LPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTG 112
PN L IEN+ G Y+C A +Q+ +
Sbjct: 540 EQSCEPGHQSPNCILFIENLTAQ-QYGHYFCEAQEGSYFREAQHWQLLPED 589
>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain
C2; IG domain, structural protein; NMR {Homo sapiens}
SCOP: b.1.1.4
Length = 104
Score = 44.3 bits (105), Expect = 2e-06
Identities = 12/100 (12%), Positives = 22/100 (22%), Gaps = 28/100 (28%)
Query: 8 KFIQ-----QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQL 62
F + + G + L + + W +G +
Sbjct: 17 AFQKKLEPAYQVSKGHKIRLTVELA-DHDAEVKWLKNGQEIQMS---------------- 59
Query: 63 PLNRRQKVFPNG---TLLIENVQKDHDRGVYWCTATNKQG 99
+ G TL I D Y C ++
Sbjct: 60 --GSKYIFESIGAKRTLTISQCSLA-DDAAYQCVVGGEKC 96
Score = 43.9 bits (104), Expect = 3e-06
Identities = 15/90 (16%), Positives = 27/90 (30%), Gaps = 8/90 (8%)
Query: 107 HISVTGAP-FVRPM-GNVSAIAGEPLYLGCPVAGYPIESITWQK-GVQQLPLNRRQKVFP 163
+ + F + + G + L +A + E + W K G + +
Sbjct: 9 SMDEKKSTAFQKKLEPAYQVSKGHKIRLTVELADHDAE-VKWLKNGQEIQMSGSKYIFES 67
Query: 164 NG---TLLIENVQKDHDRGVYWCTATNKQG 190
G TL I D Y C ++
Sbjct: 68 IGAKRTLTISQCSLA-DDAAYQCVVGGEKC 96
Score = 35.0 bits (81), Expect = 0.004
Identities = 11/52 (21%), Positives = 18/52 (34%), Gaps = 5/52 (9%)
Query: 198 HISVTVPPKIAPFEFQPDLHS---GDRAGVQCLVTKGDPPLTISWLKNGLPI 246
H S+ A + + G + + + D + WLKNG I
Sbjct: 7 HSSMDEKKSTAFQKKLEPAYQVSKGHKIRLTVELA--DHDAEVKWLKNGQEI 56
>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like
folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A
2dyp_D 2otp_A 3q2c_A
Length = 198
Score = 45.2 bits (107), Expect = 5e-06
Identities = 36/209 (17%), Positives = 64/209 (30%), Gaps = 39/209 (18%)
Query: 13 TLQPGP------PVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNR 66
+PG PV+L+C + Y L + + + ++P
Sbjct: 9 WAEPGSVITQGSPVTLRC--------QGGQETQEYRL------YREKKTAPWITRIPQEL 54
Query: 67 RQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSS--SQNVHISVTGA---PFVRPMGN 121
+K I ++ +H G Y C + S S + + VTGA P + +
Sbjct: 55 VKKG----QFPIPSITWEH-TGRYRCYYGSDTAGRSESSDPLELVVTGAYIKPTLSAQPS 109
Query: 122 VSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNG----TLLIENVQKDHD 177
+G + L C I ++G + P + G + V
Sbjct: 110 PVVNSGGNVTLQCDSQVAFDGFILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSR- 168
Query: 178 RGVYWCTATNKQGR----SSSQNVHISVT 202
R Y C A + S + + V
Sbjct: 169 RWWYRCYAYDSNSPYEWSLPSDLLELLVL 197
>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus
musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A
1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B
2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B*
2aq3_A 3mc0_A 3byt_A 3bzd_A ...
Length = 238
Score = 45.3 bits (107), Expect = 5e-06
Identities = 20/97 (20%), Positives = 38/97 (39%), Gaps = 13/97 (13%)
Query: 164 NGTLLIENVQKDHDRGVYWCTATNKQGRSS----------SQNVHISVTVPPKIAPFEFQ 213
+L++E VY+C + +G + + + PPK++ FE
Sbjct: 71 QFSLILELATPS-QTSVYFCASGGGRGSYAEQFFGPGTRLTVLEDLRQVTPPKVSLFEPS 129
Query: 214 PD-LHSGDRAGVQCLVTKGDP-PLTISWLKNGLPILS 248
+ + +A + CL P + +SW NG + S
Sbjct: 130 KAEIANKQKATLVCLARGFFPDHVELSWWVNGKEVHS 166
Score = 27.2 bits (60), Expect = 4.8
Identities = 17/103 (16%), Positives = 32/103 (31%), Gaps = 18/103 (17%)
Query: 12 QTLQPGPPVSLKCIATGNPTPHISW---------KLDGYPLAGDRHENKNRIGEARVQQL 62
+ G V+L C T N ++ W +L Y E + + +
Sbjct: 9 KVAVTGGKVTLSCQQTNN-HNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRP 67
Query: 63 PLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQN 105
+L++E VY+C + +G + Q
Sbjct: 68 SQE-------QFSLILELATPS-QTSVYFCASGGGRGSYAEQF 102
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI
domain, IG-like domain, extracellular receptor,
neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4
b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Length = 663
Score = 45.5 bits (106), Expect = 1e-05
Identities = 16/81 (19%), Positives = 28/81 (34%), Gaps = 3/81 (3%)
Query: 130 LYLGCPVAGYPIESITWQKGVQQLPLN-RRQKVFPNGTLLIENVQKDHDRGVYWCTATNK 188
L C + + W+ L + + LLI N+ + D GVY C + +
Sbjct: 551 AELKCSQKS-NLARVFWKFQNGVLKAESPKYGLMGRKNLLIFNLSEG-DSGVYQCLSEER 608
Query: 189 QGRSSSQNVHISVTVPPKIAP 209
+ V + K+ P
Sbjct: 609 VKNKTVFQVVAKHVLEVKVVP 629
Score = 36.7 bits (83), Expect = 0.007
Identities = 21/117 (17%), Positives = 33/117 (28%), Gaps = 20/117 (17%)
Query: 2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQ 61
+ + Q + G LKC N + WK L
Sbjct: 533 PDKSKGSYRQHFFKHGGTAELKCSQKSNL-ARVFWKFQNGVL------------------ 573
Query: 62 LPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRP 118
+ + + LLI N+ + D GVY C + + + V V P
Sbjct: 574 KAESPKYGLMGRKNLLIFNLSEG-DSGVYQCLSEERVKNKTVFQVVAKHVLEVKVVP 629
>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A
{Homo sapiens}
Length = 184
Score = 42.9 bits (101), Expect = 2e-05
Identities = 26/137 (18%), Positives = 47/137 (34%), Gaps = 12/137 (8%)
Query: 74 GTLLIENVQKDHDRGVYWCTATNKQGRS-SSQNVHISVTGA---PFVRPMGNVSAIAGEP 129
L I +++ G Y C+ N S S + + TG P + + +G
Sbjct: 52 AVLFIPAMKRSL-AGRYRCSYQNGSLWSLPSDQLELVATGVFAKPSLSAQPGPAVSSGGD 110
Query: 130 LYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQ 189
+ L C Y + K P ++ + + I V H G Y C + + +
Sbjct: 111 VTLQC-QTRYGFDQFALYKEGDPAPYKNPERWYR-ASFPIITVTAAH-SGTYRCYSFSSR 167
Query: 190 GR----SSSQNVHISVT 202
+ S + + VT
Sbjct: 168 DPYLWSAPSDPLELVVT 184
>2aw2_A B and T lymphocyte attenuator; IGI domain, IGG domain, TNFRSF,
protein-protein complex, IMM system; HET: NAG FUL; 2.80A
{Homo sapiens} SCOP: b.1.1.1
Length = 120
Score = 41.7 bits (97), Expect = 3e-05
Identities = 26/89 (29%), Positives = 36/89 (40%), Gaps = 10/89 (11%)
Query: 123 SAIAGEPLYLGCPVA-GYPIESITWQK--GVQQLPLNRRQKVFPNG------TLLIENVQ 173
S +AG+P L CPV +TW K G + L RQ + L E V
Sbjct: 22 SILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVL 81
Query: 174 KDHDRGVYWCTATNKQGRSSSQNVHISVT 202
+ D G Y C+A + S + + VT
Sbjct: 82 PN-DNGSYRCSANFQSNLIESHSTTLYVT 109
Score = 35.2 bits (80), Expect = 0.005
Identities = 25/113 (22%), Positives = 41/113 (36%), Gaps = 25/113 (22%)
Query: 6 IYKFIQQTLQPGPPVSLKC-IATGNPTPHISW-KLDGYP--LAGDRH---ENKNRIGEAR 58
I + + ++ G P L+C + PH++W KL+G DR + + I
Sbjct: 15 IKRQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFF- 73
Query: 59 VQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVT 111
L E V + D G Y C+A + S + + VT
Sbjct: 74 ----------------ILHFEPVLPN-DNGSYRCSANFQSNLIESHSTTLYVT 109
>3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin
domain, microsome, protein disulfide isomerase,
thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo
sapiens}
Length = 401
Score = 43.5 bits (101), Expect = 4e-05
Identities = 21/86 (24%), Positives = 30/86 (34%), Gaps = 6/86 (6%)
Query: 164 NGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPK--IAPFEFQPDLHSGDR 221
NGT + VQ G Y T + + ++V PPK + P
Sbjct: 253 NGTFWLPRVQPF-QEGTYLATIHLPYLQGQ-VTLELAVYKPPKVSLMPATLARAAPGEAP 310
Query: 222 AGVQCLVTKGDP--PLTISWLKNGLP 245
+ CLV+ P L + W G P
Sbjct: 311 PELLCLVSHFYPSGGLEVEWELRGGP 336
>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding
protein C, immunoglobulin domain, structural genomics,
NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A
Length = 100
Score = 40.8 bits (96), Expect = 4e-05
Identities = 15/88 (17%), Positives = 24/88 (27%), Gaps = 18/88 (20%)
Query: 11 QQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKV 70
+ G V +P + W +G + G R
Sbjct: 17 AYQVDKGGRVRFVVEL-ADPKLEVKWYKNGQEIRPSTKYIFEHKGCQR------------ 63
Query: 71 FPNGTLLIENVQKDHDRGVYWCTATNKQ 98
L I N Q D Y+ TA +++
Sbjct: 64 ----ILFINNCQMT-DDSEYYVTAGDEK 86
Score = 30.8 bits (70), Expect = 0.13
Identities = 10/28 (35%), Positives = 12/28 (42%), Gaps = 2/28 (7%)
Query: 219 GDRAGVQCLVTKGDPPLTISWLKNGLPI 246
G R + DP L + W KNG I
Sbjct: 23 GGRVRFVVEL--ADPKLEVKWYKNGQEI 48
>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D,
mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo
sapiens}
Length = 253
Score = 43.0 bits (101), Expect = 4e-05
Identities = 26/165 (15%), Positives = 50/165 (30%), Gaps = 40/165 (24%)
Query: 120 GNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLP-------------LNRRQKVFPNG- 165
G+ + L C + ++W QQ ++ K P
Sbjct: 9 RWRLVPRGQAVNLRCILKNSQYPWMSW---YQQDLQKQLQWLFTLRSPGDKEVKSLPGAD 65
Query: 166 ---------TLLIENVQKDHDRGVYWCTATNKQGRSSSQNV-----HISVTVPPKIA--- 208
L ++ +CT++ ++ Q ++V K
Sbjct: 66 YLATRVTDTELRLQVANMS-QGRTLYCTSSADHWTNTGQLYFGEGSKLTVLEDLKNVFPP 124
Query: 209 -PFEFQP---DLHSGDRAGVQCLVTKGDP-PLTISWLKNGLPILS 248
F+P ++ +A + CL T P + +SW NG + S
Sbjct: 125 EVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHS 169
>2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune system;
1.63A {Mus musculus} PDB: 2ptv_A
Length = 110
Score = 40.2 bits (94), Expect = 6e-05
Identities = 22/101 (21%), Positives = 33/101 (32%), Gaps = 20/101 (19%)
Query: 121 NVSAIAGEPLYLGCPVA-GYPIESITWQKGVQQLPL----------------NRRQKVFP 163
+++A G + L P ITW Q L R
Sbjct: 12 DINAYTGSNVTLKIHKDPLGPYRRITWLHTKNQKILEYNYNSTKTIFESEFKGRVYLEEN 71
Query: 164 NGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVP 204
NG L I NV+K+ D+G Y+ + + + V P
Sbjct: 72 NGALHISNVRKE-DKGTYYMRVLR--ETENELKITLEVFDP 109
Score = 30.2 bits (68), Expect = 0.21
Identities = 21/99 (21%), Positives = 30/99 (30%), Gaps = 19/99 (19%)
Query: 17 GPPVSLKC-IATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPL-------NRRQ 68
G V+LK P I+W H +I E R
Sbjct: 18 GSNVTLKIHKDPLGPYRRITW----------LHTKNQKILEYNYNSTKTIFESEFKGRVY 67
Query: 69 KVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVH 107
NG L I NV+K+ D+G Y+ + +
Sbjct: 68 LEENNGALHISNVRKE-DKGTYYMRVLRETENELKITLE 105
>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus
receptor, cell adhesion, integrin ligand, glycopr LFA-1
ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo
sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A
1d3e_I 1d3i_I 3tcx_A
Length = 185
Score = 41.6 bits (97), Expect = 7e-05
Identities = 26/182 (14%), Positives = 52/182 (28%), Gaps = 31/182 (17%)
Query: 11 QQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKV 70
+ L G V + C + + + + PL +++ +
Sbjct: 8 KVILPRGGSVLVTCSTSCDQPKLLGIE------------------------TPLPKKELL 43
Query: 71 FPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP-FVRPMG-NVSAIAGE 128
P + + + C + S+ ++V P V G+
Sbjct: 44 LPGNNRKVYELSNVQEDSQPMCYSNC-PDGQSTAKTFLTVYWTPERVELAPLPSWQPVGK 102
Query: 129 PLYLGCPVAG-YPIE--SITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTA 185
L L C V G P ++ +G ++L P V++DH + C
Sbjct: 103 QLTLRCQVEGGAPRAQLTVVLLRGEKELK-REPAVGEPAEVTTTVLVRRDHHGAQFSCRT 161
Query: 186 TN 187
Sbjct: 162 EL 163
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.9 bits (100), Expect = 8e-05
Identities = 42/244 (17%), Positives = 78/244 (31%), Gaps = 75/244 (30%)
Query: 4 QLIYKFIQQTLQPG-----PPVSLKCIATGNPTPHISWKLDGYPLAGD----------RH 48
+++ KF+++ L+ P+ + T + D L D R
Sbjct: 77 EMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD--RLYNDNQVFAKYNVSRL 134
Query: 49 ENKNRIGEARVQQLPLNRRQKVFPNG------TLLIENVQKDH------DRGVYWCTATN 96
+ ++ +A + +L + V +G T + +V + D ++W N
Sbjct: 135 QPYLKLRQA-LLEL--RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKN 191
Query: 97 KQGRSSS----QNVHISVTGAPFVRPMGNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQ 152
+ Q + + P + + L I SI Q
Sbjct: 192 CNSPETVLEMLQKLLYQID------PNWTSRSDHSSNIKL-------RIHSI-------Q 231
Query: 153 LPLNR--RQKVFPNGTLLIENVQKDHDRGVYW------C----TATNKQ---GRSSSQNV 197
L R + K + N L++ NVQ + W C T KQ S++
Sbjct: 232 AELRRLLKSKPYENCLLVLLNVQ---NAKA-WNAFNLSCKILLTTRFKQVTDFLSAATTT 287
Query: 198 HISV 201
HIS+
Sbjct: 288 HISL 291
>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology,
IGSF, cell SU receptor signalling, glycosylation,
membrane protein; HET: NAG; 2.90A {Homo sapiens}
Length = 118
Score = 40.2 bits (94), Expect = 9e-05
Identities = 17/111 (15%), Positives = 33/111 (29%), Gaps = 27/111 (24%)
Query: 121 NVSAIAGEPLYLGC-----PVAGYPIESITWQKGVQQLPL-------------------- 155
V G+ + L C + + +TW + + +
Sbjct: 9 QVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFV 68
Query: 156 -NRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPP 205
R N +L + ++ + D G Y C S S ++ + V P
Sbjct: 69 AARLGAELRNASLRMFGLRVE-DEGNYTCLFVTFPQGSRSVDIWLRVLAKP 118
Score = 37.1 bits (86), Expect = 0.001
Identities = 18/107 (16%), Positives = 34/107 (31%), Gaps = 8/107 (7%)
Query: 15 QPGPPVSLKCIATGNPTP-----HISW--KLDGYPLAGDRHENKNRIGEARVQQLPLNRR 67
G V+L C ++W + +A E++ + R
Sbjct: 13 FLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARL 72
Query: 68 QKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP 114
N +L + ++ + D G Y C S S ++ + V P
Sbjct: 73 GAELRNASLRMFGLRVE-DEGNYTCLFVTFPQGSRSVDIWLRVLAKP 118
>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast
MYBP-C, C-protein, skeletal muscle fast isoform,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 39.4 bits (91), Expect = 2e-04
Identities = 22/105 (20%), Positives = 31/105 (29%), Gaps = 17/105 (16%)
Query: 115 FVRPMGNVSAIAGEPLYLGCPVAGYPIE---SITWQKG------------VQQLPLNRRQ 159
F++ +VS G+ + V G + +I W KG +
Sbjct: 15 FLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSA 74
Query: 160 KVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVP 204
L I V DRG Y K S +I V P
Sbjct: 75 SNVYTVELHIGKVVLG-DRGYYRLEVKAKDTCDSC-GFNIDVEAP 117
Score = 35.6 bits (81), Expect = 0.004
Identities = 21/105 (20%), Positives = 29/105 (27%), Gaps = 12/105 (11%)
Query: 12 QTLQPGPPVSLKCIATGNP---TPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQ 68
+++ G + G P I W G E ++ G AR +
Sbjct: 22 VSVETGKDAVVVAKVNGKELPDKPTIKW------FKGKWLELGSKSG-ARFSFKESHNSA 74
Query: 69 KVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGA 113
L I V DRG Y K S +I V
Sbjct: 75 SNVYTVELHIGKVVLG-DRGYYRLEVKAKDTCDSC-GFNIDVEAP 117
>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel,
immunoglobulin fold, IGV domain, TIM, immune system;
2.50A {Mus musculus}
Length = 116
Score = 39.1 bits (91), Expect = 2e-04
Identities = 24/112 (21%), Positives = 40/112 (35%), Gaps = 25/112 (22%)
Query: 121 NVSAIAGEPLYLGCPVAG-YPIESITWQKGV---------------QQLPLNRRQKVFPN 164
V + G P+ L C + I + W +G ++ + +
Sbjct: 6 EVKGVVGHPVTLPCTYSTYRGITTTCWGRGQCPSSACQNTLIWTNGHRVTYQKSSRYNLK 65
Query: 165 G-------TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAP 209
G +L IEN + D G+Y C G + Q V S+ V P++ P
Sbjct: 66 GHISEGDVSLTIENSVES-DSGLYCCRVEIP-GWFNDQKVTFSLQVKPELVP 115
Score = 32.2 bits (73), Expect = 0.049
Identities = 24/107 (22%), Positives = 39/107 (36%), Gaps = 12/107 (11%)
Query: 17 GPPVSLKCIATGNPTP-HISWKLDGYPLAGDR----HENKNRIGEARVQQLPLNRRQKVF 71
G PV+L C + W P + + N +R+ + + L
Sbjct: 12 GHPVTLPCTYSTYRGITTTCWGRGQCPSSACQNTLIWTNGHRVTYQKSSRYNLKGHISEG 71
Query: 72 PNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRP 118
+ +L IEN + D G+Y C G + Q V S+ V+P
Sbjct: 72 -DVSLTIENSVES-DSGLYCCRVEIP-GWFNDQKVTFSLQ----VKP 111
>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens}
PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E
Length = 246
Score = 40.2 bits (94), Expect = 3e-04
Identities = 30/166 (18%), Positives = 55/166 (33%), Gaps = 41/166 (24%)
Query: 120 GNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLP---------------LNRRQKVFPN 164
V + +G + + C + ++ W +Q P Q V +
Sbjct: 9 SWVISKSGTSVKIECRSLDFQATTMFW---YRQFPKQSLMLMATSNEGSKATYEQGVEKD 65
Query: 165 G-----------TLLIENVQKDHDRGVYWCTATN---------KQGRSSSQNVHISVTVP 204
TL + + + D Y C+A G + + P
Sbjct: 66 KFLINHASLTLSTLTVTSAHPE-DSSFYICSARTSGDFGEQFFGPGTRLTVLEDLKNVFP 124
Query: 205 PKIAPFE-FQPDLHSGDRAGVQCLVTKGDP-PLTISWLKNGLPILS 248
P++A FE + ++ +A + CL T P + +SW NG + S
Sbjct: 125 PEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHS 170
>3nfj_J T cell receptor beta chain; immunoglobulin family, immune system;
2.68A {Homo sapiens} PDB: 3hg1_E
Length = 245
Score = 40.2 bits (94), Expect = 3e-04
Identities = 31/163 (19%), Positives = 52/163 (31%), Gaps = 40/163 (24%)
Query: 122 VSAIAGEPLYLGCPVAGYPIESITWQKGVQQLP------------LNRRQKVFP------ 163
+ G PL L C V G ++ W +Q + + P
Sbjct: 11 LVQPVGSPLSLECTVEGTSNPNLYW---YRQAAGRGLQLLFYSVGIGQISSEVPQNLSAS 67
Query: 164 -----NGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNV-----------HISVTVPPKI 207
L + + D G Y C + G ++ PP++
Sbjct: 68 RPQDRQFILSSKKLLLS-DSGFYLCAWSVSVGAGVPTIYFGEGSWLTVVEDLNKVFPPEV 126
Query: 208 APFE-FQPDLHSGDRAGVQCLVTKGDP-PLTISWLKNGLPILS 248
A FE + ++ +A + CL T P + +SW NG + S
Sbjct: 127 AVFEPSEAEISHTQKATLVCLATGFFPDHVELSWWVNGKEVHS 169
>1xau_A B- and T-lymphocyte attenuator; IG domain, beta sandwich,
structural genomics, PSI, protein structure initiative;
1.80A {Mus musculus} SCOP: b.1.1.4
Length = 122
Score = 38.7 bits (89), Expect = 3e-04
Identities = 22/92 (23%), Positives = 35/92 (38%), Gaps = 13/92 (14%)
Query: 123 SAIAGEPLYLGCPVA-GYPIESITWQK--GVQQLPLNRRQKVFPNGT---------LLIE 170
SA GE + CPV ++TW K G +PL +++ + L +
Sbjct: 25 SAWTGELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQLYTSWEENRSVPVFVLHFK 84
Query: 171 NVQKDHDRGVYWCTATNKQGRSSSQNVHISVT 202
+ D G Y C+ +S +V I V
Sbjct: 85 PIHLS-DNGSYSCSTNFNSQVINSHSVTIHVR 115
Score = 34.1 bits (77), Expect = 0.012
Identities = 19/108 (17%), Positives = 37/108 (34%), Gaps = 12/108 (11%)
Query: 6 IYKFIQQTLQPGPPVSLKC-IATGNPTPHISW-KLDGYPLAGDRHENKNRIGEARVQQLP 63
I + + + G ++C + P+++W K +G + + +P
Sbjct: 18 IKRNSKHSAWTGELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQLYTSWEENRSVP 77
Query: 64 LNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVT 111
VF L + + D G Y C+ +S +V I V
Sbjct: 78 ------VF---VLHFKPIHLS-DNGSYSCSTNFNSQVINSHSVTIHVR 115
>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse
IGG, zinc-finger, DNA-binding, RNA-binding, tripartite
motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus
musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A
Length = 207
Score = 39.8 bits (93), Expect = 3e-04
Identities = 19/131 (14%), Positives = 41/131 (31%), Gaps = 17/131 (12%)
Query: 132 LGCPVAGYPIE----SITWQK---GVQQLPLNRRQKVFPN-----GTLLIENVQKDHDRG 179
+ C V + +W V R++ F + L I + +
Sbjct: 23 VTCVVVDISKDDPEVQFSWFVDDVEVHTAQTKPREEQFNSTFRSVSELPIMHQDWL-NGK 81
Query: 180 VYWCTATNK---QGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPP-L 235
+ C + + + P++ + + D+ + C++T P +
Sbjct: 82 EFKCRVNSAAFPAPIEKTISKTKGRPKAPQVYTLPPPKEQMAKDKVSLTCMITDFFPEDI 141
Query: 236 TISWLKNGLPI 246
T+ W NG P
Sbjct: 142 TVEWESNGQPA 152
>1a64_A CD2; domain swapping, hinge loop, oligomer evolution; 2.00A {Rattus
norvegicus} SCOP: b.1.1.1 PDB: 1a7b_A 1cdc_B 1a6p_A
1t6w_A
Length = 97
Score = 37.3 bits (86), Expect = 5e-04
Identities = 13/69 (18%), Positives = 25/69 (36%), Gaps = 12/69 (17%)
Query: 33 HISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWC 92
+ W+ + E + + + ++ NG L I+N+ +D D G Y
Sbjct: 29 EVRWE-----------RGSTLVAEFKRKPFLKSGAFEILANGDLKIKNLTRD-DSGTYNV 76
Query: 93 TATNKQGRS 101
T + G
Sbjct: 77 TVYSTNGTR 85
Score = 35.0 bits (80), Expect = 0.004
Identities = 14/60 (23%), Positives = 26/60 (43%), Gaps = 9/60 (15%)
Query: 141 IESITWQKGV--------QQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRS 192
I+ + W++G + + ++ NG L I+N+ +D D G Y T + G
Sbjct: 27 IDEVRWERGSTLVAEFKRKPFLKSGAFEILANGDLKIKNLTRD-DSGTYNVTVYSTNGTR 85
>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II,
MEM receptor, molecular mimicry, multiple sclerosis,
immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo
sapiens}
Length = 279
Score = 39.5 bits (92), Expect = 6e-04
Identities = 27/168 (16%), Positives = 56/168 (33%), Gaps = 43/168 (25%)
Query: 120 GNVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLP---------------LNRRQKVFPN 164
V + +G + + C + ++ W +Q P Q V +
Sbjct: 32 SWVISKSGTSVKIECRSLDFQATTMFW---YRQFPKQSLMLMATSNEGSKATYEQGVEKD 88
Query: 165 G-----------TLLIENVQKDHDRGVYWCTATNKQGRSSS-------QNVHISVTVPPK 206
TL + + + D Y C+A + +++ + ++ +
Sbjct: 89 KFLINHASLTLSTLTVTSAHPE-DSSFYICSARDLTSGANNEQFFGPGTRLTVTEDLKNV 147
Query: 207 IAP--FEFQP---DLHSGDRAGVQCLVTKGDP-PLTISWLKNGLPILS 248
P F+P ++ +A + CL T P + +SW NG + S
Sbjct: 148 FPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHS 195
>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune
system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
b.1.1.2
Length = 344
Score = 39.4 bits (92), Expect = 6e-04
Identities = 37/200 (18%), Positives = 62/200 (31%), Gaps = 35/200 (17%)
Query: 86 DRGVYWCTATNKQ---GRSSSQNVHISVTGAPFVRPMGNVS-AIAGEPLYLGCPVAGYPI 141
D VY+CT + G+ + V + T P V P+ S + +G LGC V Y
Sbjct: 90 DTAVYFCTRSLNMAYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFP 149
Query: 142 ESIT--WQKG-----VQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSS 194
E +T W G V P + + + ++ Y C +K +
Sbjct: 150 EPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKV 209
Query: 195 QN-----------------------VHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKG 231
P++ D + ++ + CLV
Sbjct: 210 DKKVEPKSCDKTHTCPPCGGGSSGGGSGGQPREPQVYTLPPSRDELTKNQVSLTCLVKGF 269
Query: 232 DP-PLTISWLKNGLPILSAM 250
P + + W NG P +
Sbjct: 270 YPSDIAVEWESNGQPENNYK 289
>3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB,
immune system/cytokine complex; 1.90A {Homo sapiens}
SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A*
1f42_A* 1f45_A* 3hmx_A* 3qwr_A*
Length = 306
Score = 39.3 bits (90), Expect = 7e-04
Identities = 35/248 (14%), Positives = 57/248 (22%), Gaps = 49/248 (19%)
Query: 12 QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVF 71
PG V L C I+W LD +V
Sbjct: 16 YPDAPGEMVVLTC--DTPEEDGITWTLDQ--------------------------SSEVL 47
Query: 72 PNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGNVSAIAGEPLY 131
+G L V++ D G Y C + S +H G + + +
Sbjct: 48 GSGKTLTIQVKEFGDAGQYTCHKGGEVLSHSLLLLHKKEDG-IWSTDILKDQKEPKNKTF 106
Query: 132 LGCPVAGYPIE-SITWQKGVQQLP----LNRRQKVFPNGTLLIE--------NVQKDHDR 178
L C Y + W + + R P G
Sbjct: 107 LRCEAKNYSGRFTCWWLTTISTDLTFSVKSSRGSSDPQGVTCGAATLSAERVRGDNKEYE 166
Query: 179 GVYWCTATNK-QGRSSSQNVHISVTV------PPKIAPFEFQPDLHSGDRAGVQCLVTKG 231
C + S + + V + F + + +Q K
Sbjct: 167 YSVECQEDSACPAAEESLPIEVMVDAVHKLKYEQYTSSFFIRDIIKPDPPKNLQLKPLKN 226
Query: 232 DPPLTISW 239
+ +SW
Sbjct: 227 SRQVEVSW 234
>2frg_P TREM-like transcript-1; immunoglobulin-like, beta-sandwich, cell
surface receptor, triggering receptor, platelet
receptor, ITIM, immune system; 1.19A {Homo sapiens}
Length = 106
Score = 36.8 bits (85), Expect = 0.001
Identities = 8/49 (16%), Positives = 19/49 (38%), Gaps = 4/49 (8%)
Query: 156 NRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVP 204
+ + + + +Q++ D G Y C +G V +++ P
Sbjct: 62 DLGGGLL---QVEMVTLQEE-DAGEYGCMVDGARGPQILHRVSLNILPP 106
Score = 34.5 bits (79), Expect = 0.007
Identities = 7/47 (14%), Positives = 18/47 (38%), Gaps = 4/47 (8%)
Query: 65 NRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVT 111
+ + + + +Q++ D G Y C +G V +++
Sbjct: 62 DLGGGLL---QVEMVTLQEE-DAGEYGCMVDGARGPQILHRVSLNIL 104
>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus
musculus} PDB: 2qhr_L 3ffd_B 4dcq_A
Length = 218
Score = 38.0 bits (89), Expect = 0.001
Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 10/92 (10%)
Query: 166 TLLIENVQKDHDRGVYWCTATNKQGRSSS----QNVHISVTVPPKIAP--FEFQP--DLH 217
L I N+Q + D +Y C + ++V PK P F P +
Sbjct: 76 YLSISNIQPE-DEAIYICGVGDTIKEQFVYVFGGGTKVTVLGQPKSTPTLTVFPPSSEEL 134
Query: 218 SGDRAGVQCLVTKGDP-PLTISWLKNGLPILS 248
++A + CL++ P +T++W NG PI
Sbjct: 135 KENKATLVCLISNFSPSGVTVAWKANGTPITQ 166
>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody,
immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL
SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2
b.1.1.2 PDB: 2qej_A*
Length = 214
Score = 37.5 bits (87), Expect = 0.002
Identities = 18/128 (14%), Positives = 35/128 (27%), Gaps = 14/128 (10%)
Query: 132 LGCPVAGYPIES---ITWQKGVQQLPLNRRQKVFPNGT------LLIENVQKDHDRGVYW 182
L C + G S TW + + + G L + +
Sbjct: 24 LTCTLTGLRDASGVTFTWTPSSGKSAVQGPPERDLCGCYSVSSVLPGCAEPWN-HGKTFT 82
Query: 183 CTATNKQGRSSSQNVHISVTVPPKIAPFEFQP---DLHSGDRAGVQCLVTKGDPP-LTIS 238
CTA + ++ + P +L + + CL P + +
Sbjct: 83 CTAAYPESKTPLTATLSKSGNTFRPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVR 142
Query: 239 WLKNGLPI 246
WL+ +
Sbjct: 143 WLQGSQEL 150
Score = 27.1 bits (60), Expect = 4.5
Identities = 29/177 (16%), Positives = 49/177 (27%), Gaps = 39/177 (22%)
Query: 14 LQPGPPVSLKCIATGNPTPH---ISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKV 70
L G +L C TG +W G++ VQ P +
Sbjct: 16 LLLGSEANLTCTLTGLRDASGVTFTWTPSS--------------GKSAVQGPP-----ER 56
Query: 71 FPNGT------LLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP----FVRPMG 120
G L + + CTA + ++ + P
Sbjct: 57 DLCGCYSVSSVLPGCAEPWN-HGKTFTCTAAYPESKTPLTATLSKSGNTFRPEVHLLPPP 115
Query: 121 NVSAIAGEPLYLGCPVAG-YPIE-SITWQKGVQQLPLNRRQKVFPNGTLLIENVQKD 175
+ E + L C G P + + W +G Q+LP ++ + E Q
Sbjct: 116 SEELALNELVTLTCLARGFSPKDVLVRWLQGSQELP----REKYLTWASRQEPSQGT 168
>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell
receptor delta, immune system; HET: NAG MAN FUC; 3.40A
{Mus musculus} SCOP: b.1.1.1 b.1.1.2
Length = 207
Score = 37.2 bits (86), Expect = 0.002
Identities = 23/90 (25%), Positives = 31/90 (34%), Gaps = 10/90 (11%)
Query: 166 TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVH--------ISVTVPPKIAPFEFQPDLH 217
TL I + Q + D G Y+C A + VTV PK P
Sbjct: 72 TLHIRDAQLE-DSGTYFCAADTWHISEGYELGTDKLVFGQGTQVTVEPKSQPPAKPSVFI 130
Query: 218 SGDRAGVQCLVTKGDP-PLTISWLKNGLPI 246
+ V CLV P +TIS + +
Sbjct: 131 MKNGTNVACLVKDFYPKEVTISLRSSKKIV 160
>2qsq_A Carcinoembryonic antigen-related cell adhesion MO; glycoprotein,
GPI-anchor, immunoglobulin DOMA lipoprotein, membrane;
1.95A {Homo sapiens} PDB: 2qst_A 2ver_N* 2gk2_A
Length = 111
Score = 35.7 bits (82), Expect = 0.003
Identities = 20/104 (19%), Positives = 37/104 (35%), Gaps = 12/104 (11%)
Query: 104 QNVHISVTGAPFVRPMGNVSAIA---GEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQK 160
+ V + V P ++ + GE + + GY I + G R+
Sbjct: 16 KEVLLLVHNLP-----QHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSG---REI 67
Query: 161 VFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVP 204
++PN +LLI+N+ ++ D G Y + V
Sbjct: 68 IYPNASLLIQNIIQN-DAGFYTLHVIKSDLVNEEATGQFRVYPE 110
Score = 33.8 bits (77), Expect = 0.012
Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 67 RQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISV 110
R+ ++PN +LLI+N+ ++ D G Y + V
Sbjct: 65 REIIYPNASLLIQNIIQN-DAGFYTLHVIKSDLVNEEATGQFRV 107
>2or7_A T-cell immunoglobulin and mucin domain- containing protein 2; beta
barrel, immunoglobulin fold, IGV domain, TIM, immune
system; 1.50A {Mus musculus}
Length = 115
Score = 35.3 bits (81), Expect = 0.003
Identities = 24/113 (21%), Positives = 36/113 (31%), Gaps = 28/113 (24%)
Query: 121 NVSAIAGEPLYLGC--PVAGYPIESITWQKGVQQLPLNRRQKVFPNG------------- 165
V +AG P+ L C I + W G + R ++ NG
Sbjct: 6 AVQGLAGHPVTLPCIYSTHLGGIVPMCWGLGECRHSYCIRSLIWTNGYTVTHQRNSRYQL 65
Query: 166 ---------TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAP 209
+L IEN D G Y C + + V + V P++ P
Sbjct: 66 KGNISEGNVSLTIENTVVG-DGGPYCCVV---EIPGAFHFVDYMLEVKPELVP 114
Score = 30.3 bits (68), Expect = 0.25
Identities = 21/105 (20%), Positives = 31/105 (29%), Gaps = 9/105 (8%)
Query: 17 GPPVSLKCIATGNP--TPHISWKLDGYPLAGDRHE----NKNRIGEARVQQLPLNRRQKV 70
G PV+L CI + + + W L + N + R + L
Sbjct: 12 GHPVTLPCIYSTHLGGIVPMCWGLGECRHSYCIRSLIWTNGYTVTHQRNSRYQLKGNIS- 70
Query: 71 FPNGTLLIENVQKDHDRGVYWCTATNK-QGRSSSQNVHISVTGAP 114
N +L IEN D G Y C + + P
Sbjct: 71 EGNVSLTIENTVVG-DGGPYCCVVEIPGAFHFVDYMLEVKPELVP 114
>3r0n_A Poliovirus receptor-related protein 2; IG-domain, cell-adhesion
molecule, virus entry receptor, STR genomics,
PSI-biology; 1.30A {Homo sapiens}
Length = 128
Score = 35.7 bits (82), Expect = 0.004
Identities = 10/65 (15%), Positives = 18/65 (27%), Gaps = 1/65 (1%)
Query: 46 DRHENKNRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQN 105
R+ +Q + + TL + + + D G Y C S
Sbjct: 65 SPKPGSERLSFVSAKQSTGQDTEAELQDATLALHGLTVE-DEGNYTCEFATFPKGSVRGM 123
Query: 106 VHISV 110
+ V
Sbjct: 124 TWLRV 128
Score = 32.3 bits (73), Expect = 0.063
Identities = 20/119 (16%), Positives = 30/119 (25%), Gaps = 39/119 (32%)
Query: 121 NVSAIAGEPLYLGC----PVAGYPIESITWQK---------------------------- 148
V G + L C PV G I +TWQ+
Sbjct: 11 EVRGQLGGTVELPCHLLPPVPGLYISLVTWQRPDAPANHQNVAAFHPKMGPSFPSPKPGS 70
Query: 149 ------GVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISV 201
+Q + + TL + + + D G Y C S + V
Sbjct: 71 ERLSFVSAKQSTGQDTEAELQDATLALHGLTVE-DEGNYTCEFATFPKGSVRGMTWLRV 128
>3bia_X T-cell immunoglobulin and mucin domain- containing protein 4; beta
barrel, immunoglobulin fold, IGV domain, TIM,
glycoprotein; HET: TLA; 2.20A {Mus musculus} PDB:
3bi9_X* 3bib_X*
Length = 116
Score = 35.3 bits (81), Expect = 0.005
Identities = 19/112 (16%), Positives = 34/112 (30%), Gaps = 26/112 (23%)
Query: 122 VSAIAGEPLYLGC--PVAGYPIESITWQKGVQQLPLNRRQKVFPNG-------------- 165
+ G+P+ L C S+ W KG + + +G
Sbjct: 6 IIGFLGQPVTLPCHYLSWSQSRNSMCWGKGSCPNSKCNAELLRTDGTRIISRKSTKYTLL 65
Query: 166 --------TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAP 209
+L I N + D GVY C G + ++ + + + P
Sbjct: 66 GKVQFGEVSLTISNTNRG-DSGVYCCRIEVP-GWFNDVKKNVRLELRRALVP 115
Score = 28.8 bits (64), Expect = 0.72
Identities = 19/82 (23%), Positives = 30/82 (36%), Gaps = 8/82 (9%)
Query: 17 GPPVSLKCI--ATGNPTPHISWKLDGYPLAGDR----HENKNRIGEARVQQLPLNRRQKV 70
G PV+L C + + W P + + RI + + L + +
Sbjct: 11 GQPVTLPCHYLSWSQSRNSMCWGKGSCPNSKCNAELLRTDGTRIISRKSTKYTLLGKVQ- 69
Query: 71 FPNGTLLIENVQKDHDRGVYWC 92
F +L I N + D GVY C
Sbjct: 70 FGEVSLTISNTNRG-DSGVYCC 90
>2nms_A CMRF35-like-molecule 1; IG-superfamily, IG-V, NKP44-like, myeloid
IG-like receptor, inhibitory receptor, myelo-monocytic
cells; 2.60A {Homo sapiens}
Length = 124
Score = 35.3 bits (81), Expect = 0.005
Identities = 19/111 (17%), Positives = 35/111 (31%), Gaps = 28/111 (25%)
Query: 122 VSAIAGEPLYLGCPVA-GYPIESITWQKGVQ----------------------QLPLNRR 158
V+ + L + C G+ W +G + N++
Sbjct: 12 VNGLERGSLTVQCVYRSGWETYLKWWCRGAIWRDCKILVKTSGSEQEVKRDRVSIKDNQK 71
Query: 159 QKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAP 209
+ F T+ +E++ K D YWC K G V +++ P
Sbjct: 72 NRTF---TVTMEDLMKT-DADTYWC-GIEKTGNDLGVTVQVTIDPAPVTQE 117
Score = 35.3 bits (81), Expect = 0.005
Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 5/63 (7%)
Query: 61 QLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMG 120
+ N++ + F T+ +E++ K D YWC K G V +++ AP +
Sbjct: 65 SIKDNQKNRTF---TVTMEDLMKT-DADTYWC-GIEKTGNDLGVTVQVTIDPAPVTQEET 119
Query: 121 NVS 123
+ S
Sbjct: 120 SSS 122
>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology,
X-RAY solution scattering, constrained modelling, immune
system; NMR {Homo sapiens}
Length = 523
Score = 36.7 bits (85), Expect = 0.006
Identities = 20/88 (22%), Positives = 38/88 (43%), Gaps = 8/88 (9%)
Query: 166 TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTV------PPKIAPFEFQPDLHSG 219
+L I ++ + D Y+C + N S VTV P + F +
Sbjct: 71 SLAISGLEAE-DESDYYCASWNSSDNSYVFGTGTKVTVLGQPKANPTVTLFPPSSEELQA 129
Query: 220 DRAGVQCLVTKGDP-PLTISWLKNGLPI 246
++A + CL++ P +T++W +G P+
Sbjct: 130 NKATLVCLISDFYPGAVTVAWKADGSPV 157
Score = 36.0 bits (83), Expect = 0.011
Identities = 33/178 (18%), Positives = 54/178 (30%), Gaps = 25/178 (14%)
Query: 89 VYWCTATNKQGRSSSQNVHISVTGAPFVR---PMGNVSAIAGEPLYLGCPVAGYPIE--- 142
Y C +K ++ + + P V P + + + C V E
Sbjct: 294 TYICNVNHK-PSNTKVDKRVEPLSLPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPQ 352
Query: 143 -SITWQKGVQQLPLNRRQKV---FPNGT------LLIENVQKDHDRGVYWCTATNKQGRS 192
W Q N + K N T L + + D Y C +NK
Sbjct: 353 VKFNWYVDGVQ-VHNAKTKPREQQYNSTYRVVSVLTVLHQNWL-DGKEYKCKVSNK-ALP 409
Query: 193 SSQNVHISVTVPPKIAP--FEFQP--DLHSGDRAGVQCLVTKGDP-PLTISWLKNGLP 245
+ IS P + P + + ++ + CLV P + + W NG P
Sbjct: 410 APIEKTISKAKGQPREPQVYTLPPSREEMTKNQVSLTCLVKGFYPSDIAVEWESNGQP 467
>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C
region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC;
2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2
b.1.1.2
Length = 444
Score = 36.0 bits (83), Expect = 0.008
Identities = 23/139 (16%), Positives = 38/139 (27%), Gaps = 17/139 (12%)
Query: 127 GEPLYLGCPVAGYPIE----SITWQK-------GVQQLPLNRRQKVFPNGTLLIENVQKD 175
+ C V + I+W Q + L Q
Sbjct: 255 SLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDW 314
Query: 176 HDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAP--FEFQP--DLHSGDRAGVQCLVTKG 231
+ C NK + IS AP + P + + + + C+VT
Sbjct: 315 MSGKEFKCKVNNK-DLPAPIERTISKPKGSVRAPQVYVLPPPEEEMTKKQVTLTCMVTDF 373
Query: 232 DP-PLTISWLKNGLPILSA 249
P + + W NG L+
Sbjct: 374 MPEDIYVEWTNNGKTELNY 392
>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC
complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A
{Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A*
3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A*
3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A*
2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...
Length = 207
Score = 35.6 bits (82), Expect = 0.009
Identities = 21/130 (16%), Positives = 40/130 (30%), Gaps = 17/130 (13%)
Query: 132 LGCPVAGYPIE----SITWQ---KGVQQLPLNRRQKVFPN-----GTLLIENVQKDHDRG 179
+ C V E W V R++ + + L + + +
Sbjct: 23 VTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWL-NGK 81
Query: 180 VYWCTATNK---QGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPP-L 235
Y C +NK + + P++ D + ++ + CLV P +
Sbjct: 82 EYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDI 141
Query: 236 TISWLKNGLP 245
+ W NG P
Sbjct: 142 AVEWESNGQP 151
>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane,
phosphorylation, immunoglobulin fold, signal; 1.90A
{Rattus norvegicus} SCOP: b.1.1.1
Length = 124
Score = 34.2 bits (78), Expect = 0.010
Identities = 17/120 (14%), Positives = 30/120 (25%), Gaps = 31/120 (25%)
Query: 116 VRPMGNVSAIAGEPLYLGC----PVAGYPIESITWQKGVQQLPLNRRQKVFPNG------ 165
V V G + L C S TW+ + + G
Sbjct: 3 VYTDREVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDE 62
Query: 166 -------------------TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPK 206
+++I N+ D G + C N + +++ V K
Sbjct: 63 VGTFKERIQWVGDPSWKDGSIVIHNLDYS-DNGTFTCDVKNPPD-IVGKTSQVTLYVFEK 120
>1nko_A Sialic acid binding IG-like lectin 7; immunoglobulin, siglec7,
immune system; 1.45A {Homo sapiens} SCOP: b.1.1.1 PDB:
2g5r_A* 1o7v_A* 2df3_A* 1o7s_A* 2hrl_A*
Length = 132
Score = 34.1 bits (78), Expect = 0.013
Identities = 20/115 (17%), Positives = 38/115 (33%), Gaps = 19/115 (16%)
Query: 15 QPGPPVSLKCI-------ATGNPTPHISWKLDGYPLAGDR---HENKNRIGEARVQ---Q 61
Q G V ++C T + H W G ++ N + +
Sbjct: 19 QEGMCVHVRCSFSYPVDSDTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFH 78
Query: 62 LPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQN--VHISVTGAP 114
L + + K N TL I + + D G Y+ + + + + ++VT
Sbjct: 79 LLGDPQTK---NCTLSIRDARM-SDAGRYFFRMEKGNIKWNYKYDQLSVNVTALT 129
Score = 34.1 bits (78), Expect = 0.015
Identities = 12/52 (23%), Positives = 21/52 (40%), Gaps = 4/52 (7%)
Query: 152 QLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTV 203
L + + K N TL I + + D G Y+ + + + +SV V
Sbjct: 78 HLLGDPQTK---NCTLSIRDARM-SDAGRYFFRMEKGNIKWNYKYDQLSVNV 125
>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL
BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2
b.1.1.2 PDB: 1i1a_D*
Length = 239
Score = 34.9 bits (80), Expect = 0.016
Identities = 17/131 (12%), Positives = 32/131 (24%), Gaps = 17/131 (12%)
Query: 132 LGCPVAGYPIE----SITW--QKGVQQLPLNRRQKVFPNG------TLLIENVQKDHDRG 179
+ C V +W + N L I +
Sbjct: 37 VTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDWL-NGK 95
Query: 180 VYWCTATNK---QGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPP-L 235
+ C + S + P++ + + + + C+V PP +
Sbjct: 96 TFKCKVNSGAFPAPIEKSISKPEGTPRGPQVYTMAPPKEEMTQSQVSITCMVKGFYPPDI 155
Query: 236 TISWLKNGLPI 246
W NG P
Sbjct: 156 YTEWKMNGQPQ 166
>1qfo_A Protein (sialoadhesin); immunoglobulin superfamily, carbohydrate
binding, immune system; HET: SIA GAL GLC; 1.85A {Mus
musculus} SCOP: b.1.1.1 PDB: 1od7_A* 1oda_A* 1od9_A*
1qfp_A 2bve_A* 1url_A*
Length = 119
Score = 33.7 bits (77), Expect = 0.018
Identities = 11/54 (20%), Positives = 18/54 (33%), Gaps = 4/54 (7%)
Query: 152 QLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPP 205
+L N K LL+++++ D G Y +VTV
Sbjct: 69 ELMGNMDHK---VCNLLLKDLKP-EDSGTYNFRFEISDSNRWLDVKGTTVTVTT 118
>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG
BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1
b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*
Length = 457
Score = 34.8 bits (80), Expect = 0.021
Identities = 22/134 (16%), Positives = 40/134 (29%), Gaps = 17/134 (12%)
Query: 132 LGCPVAGYPIE----SITWQK-------GVQQLPLNRRQKVFPNGTLLIENVQKDHDRGV 180
+ C V E W + + + ++L Q +
Sbjct: 269 VTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKE 328
Query: 181 YWCTATNKQGRSSSQNVHISV----TVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDP-PL 235
Y C +NK + IS P++ D + ++ + CLV P +
Sbjct: 329 YKCKVSNK-ALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDI 387
Query: 236 TISWLKNGLPILSA 249
+ W NG P +
Sbjct: 388 AVEWESNGQPENNY 401
Score = 30.2 bits (68), Expect = 0.71
Identities = 21/84 (25%), Positives = 28/84 (33%), Gaps = 16/84 (19%)
Query: 177 DRGVYWCTATNKQGRSSSQNVHI---------SVTV------PPKIAPFEFQPDLHSGDR 221
D VY+C S + +V V P + P SG
Sbjct: 90 DTAVYYCARVGPYSWDDSPQDNYYMDVWGKGTTVIVSSASTKGPSVFPLAPSSKSTSGGT 149
Query: 222 AGVQCLVTKGDP-PLTISWLKNGL 244
A + CLV P P+T+SW L
Sbjct: 150 AALGCLVKDYFPEPVTVSWNSGAL 173
>1zox_A CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor,
structural genomics, PSI, protein structure initiative;
2.10A {Mus musculus}
Length = 113
Score = 32.8 bits (75), Expect = 0.031
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Query: 65 NRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP 114
N+R +F T+ +E+++ D G+YWC K G V +++ P
Sbjct: 68 NQRDFIF---TVTMEDLRMS-DAGIYWC-GITKGGLDPMFKVTVNIGPVP 112
Score = 30.1 bits (68), Expect = 0.25
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 7/50 (14%)
Query: 156 NRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPP 205
N+R +F T+ +E+++ D G+YWC K G ++V + P
Sbjct: 68 NQRDFIF---TVTMEDLRMS-DAGIYWC-GITKGGLDPM--FKVTVNIGP 110
>3nl4_L Antigen binding fragment, immunoglobulin IGG - LI; FAB, rabbit,
conformation-specific, amyloid, immune system; 1.54A
{Oryctolagus cuniculus}
Length = 213
Score = 33.7 bits (78), Expect = 0.035
Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 16/91 (17%)
Query: 166 TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHI-----SVTV---PPKIAPFEFQP--D 215
TL I +++ D Y+C Q + V V P F P D
Sbjct: 72 TLTISDLECA-DAATYYC-----QSTYENPTYVSFGGGTEVGVKGDPVAPTVLIFPPSAD 125
Query: 216 LHSGDRAGVQCLVTKGDPPLTISWLKNGLPI 246
L + + C+ K P +T++W +G
Sbjct: 126 LVATGTVTIVCVANKYFPDVTVTWEVDGTTQ 156
>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine;
HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*
Length = 240
Score = 33.8 bits (77), Expect = 0.040
Identities = 28/177 (15%), Positives = 52/177 (29%), Gaps = 24/177 (13%)
Query: 88 GVYWCTATNKQGRSSSQNVHISVTGAPFV---RPMGNVSAIAGEPLYLGCPVAGYPIE-- 142
G C T+ + + G P V P + + + C V E
Sbjct: 1 GTKSCDKTHTCPPCPAP----ELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDP 56
Query: 143 --SITWQ---KGVQQLPLNRRQKVFPN-----GTLLIENVQKDHDRGVYWCTATNK---Q 189
W V R++ + + L + + + Y C +NK
Sbjct: 57 EVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWL-NGKEYKCKVSNKALPA 115
Query: 190 GRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPP-LTISWLKNGLP 245
+ + P++ D + ++ + CLV P + + W NG P
Sbjct: 116 PIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQP 172
Score = 28.0 bits (62), Expect = 2.7
Identities = 16/77 (20%), Positives = 28/77 (36%), Gaps = 11/77 (14%)
Query: 179 GVYWCTATNKQGRSSSQNVHISVTV---PPKIAPFEFQPDLHSGDRAGVQCLVT---KGD 232
G C T+ + + +V PPK + L V C+V D
Sbjct: 1 GTKSCDKTHTCPPCPAPELLGGPSVFLFPPK-----PKDTLMISRTPEVTCVVVDVSHED 55
Query: 233 PPLTISWLKNGLPILSA 249
P + +W +G+ + +A
Sbjct: 56 PEVKFNWYVDGVEVHNA 72
>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C
region, hinge region, immunoglobulin; HET: NAG FUL NDG
BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1
b.1.1.2 b.1.1.2 b.1.1.2
Length = 434
Score = 33.7 bits (77), Expect = 0.047
Identities = 34/172 (19%), Positives = 60/172 (34%), Gaps = 45/172 (26%)
Query: 106 VHISVTGAPFVRPMGNVSAIAGEPLYLGCPVAGYPIES--ITWQKGVQQLP---LNRRQK 160
V + +GA RP G + + C +GY + I W ++Q P L
Sbjct: 1 VKLQESGAELARP--------GASVKMSCKASGYTFTTYTIHW---IKQRPGQGLEWIGY 49
Query: 161 VFPNGT------------------------LLIENVQKDHDRGVYWCTATNK---QGRSS 193
+ P+ + + ++ D D VY+C + G+ +
Sbjct: 50 INPSSVYTNYNQRFKDKATLTRDRSSNTANIHLSSLTSD-DSAVYYCVREGEVPYWGQGT 108
Query: 194 SQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDP-PLTISWLKNGL 244
+ V + T PP + P + + CLV P P+T++W L
Sbjct: 109 TVTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSL 160
>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell
immunoglobulin mucin, signaling protein; 1.95A {Mus
musculus} PDB: 3kaa_A*
Length = 109
Score = 32.2 bits (73), Expect = 0.050
Identities = 20/90 (22%), Positives = 33/90 (36%), Gaps = 15/90 (16%)
Query: 13 TLQPGPPVSLKCIATGNPTP---HISWKLDGYPLAGDRHE-------NKNRIGEARVQQL 62
++ G L C T + + W P + +E N +R Q L
Sbjct: 5 KVEVGKNAYLPCSYTLPTSGTLVPMCWGKGFCPWSQCTNELLRTDERNVTYQKSSRYQ-L 63
Query: 63 PLNRRQKVFPNGTLLIENVQKDHDRGVYWC 92
+ + + +L+I+NV D D G Y C
Sbjct: 64 KGDLNKG---DVSLIIKNVTLD-DHGTYCC 89
Score = 30.7 bits (69), Expect = 0.17
Identities = 10/40 (25%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 164 NGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTV 203
+ +L+I+NV D D G Y C G + + + + + +
Sbjct: 71 DVSLIIKNVTLD-DHGTYCCRIQFP-GLMNDKKLELKLDI 108
>1hkf_A NKP44, NK cell activating receptor; natural cytotoxicity receptor,
immunoglobulin domain; 2.2A {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 32.3 bits (73), Expect = 0.054
Identities = 19/124 (15%), Positives = 38/124 (30%), Gaps = 28/124 (22%)
Query: 104 QNVHISVTGAPFVRPMGNVSAIAGEPLYLGCPVAG--YPIESITWQKGVQQ--------- 152
+ H + + ++AG+ L + C E W K
Sbjct: 2 EGSHHHHHHSQAQSKAQVLQSVAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTS 61
Query: 153 -------------LPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHI 199
+ + F T+ + +++++ D G YWC S S++V
Sbjct: 62 SKPRTMAWTSRFTIWDDPDAGFF---TVTMTDLREE-DSGHYWCRIYRPSDNSVSKSVRF 117
Query: 200 SVTV 203
+ V
Sbjct: 118 YLVV 121
Score = 28.4 bits (63), Expect = 1.1
Identities = 10/47 (21%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
Query: 65 NRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVT 111
+ F T+ + +++++ D G YWC S S++V +
Sbjct: 78 DPDAGFF---TVTMTDLREE-DSGHYWCRIYRPSDNSVSKSVRFYLV 120
>2q87_A CMRF35-H antigen; all-beta, immunoglobulin, IG-superfamily, IG-V,
NKP44-like, natural killer cell IG-like receptor,
inhibitory receptor; 1.70A {Homo sapiens}
Length = 110
Score = 31.8 bits (72), Expect = 0.069
Identities = 20/107 (18%), Positives = 35/107 (32%), Gaps = 27/107 (25%)
Query: 122 VSAIAGEPLYLGCPV-AGYPIESITWQKGVQ---------------------QLPLNRRQ 159
V+ G L + CP + + W + Q + +
Sbjct: 6 VAGPVGGSLSVQCPYEKEHRTLNKYWCRPPQIFLCDKIVETKGSAGKRNGRVSIRDSPAN 65
Query: 160 KVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSS-QNVHISVTVPP 205
F T+ +EN+ ++ D G YWC + V + V+V P
Sbjct: 66 LSF---TVTLENLTEE-DAGTYWCGVDTPWLQDFHDPVVEVEVSVFP 108
Score = 26.4 bits (58), Expect = 4.4
Identities = 21/123 (17%), Positives = 39/123 (31%), Gaps = 28/123 (22%)
Query: 1 SHPQLIYKFIQQTLQPGPPVSLKCI-ATGNPTPHISW---KLDGYPL-----AGDRHENK 51
S + + G +S++C + T + W G +
Sbjct: 1 SKARTV------AGPVGGSLSVQCPYEKEHRTLNKYWCRPPQIFLCDKIVETKGSAGKRN 54
Query: 52 NRIGEARVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWC---TATNKQGRSSSQNVHI 108
R+ + + F T+ +EN+ ++ D G YWC T + V +
Sbjct: 55 GRV------SIRDSPANLSF---TVTLENLTEE-DAGTYWCGVDTPWLQDFHDPVVEVEV 104
Query: 109 SVT 111
SV
Sbjct: 105 SVF 107
>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN;
1.75A {Gallus gallus}
Length = 231
Score = 31.9 bits (72), Expect = 0.13
Identities = 32/130 (24%), Positives = 48/130 (36%), Gaps = 16/130 (12%)
Query: 132 LGCPVAGYPIES---ITW--QKGVQQLPLNRRQKVFPNGT------LLIENVQKDHDRGV 180
L C V P +S +TW +K P + NGT + +
Sbjct: 33 LRCLVVNLPSDSSLSVTWTREKSGNLRPDPMVLQEHFNGTYSASSAVPVSTQD-WLSGER 91
Query: 181 YWCTATNK---QGRSSSQNVHISVTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPP-LT 236
+ CT ++ S S + T PP I PF P+ S R + CLV P +
Sbjct: 92 FTCTVQHEELPLPLSKSVYRNTGPTTPPLIYPFAPHPEELSLSRVTLSCLVRGFRPRDIE 151
Query: 237 ISWLKNGLPI 246
I WL++ +
Sbjct: 152 IRWLRDHRAV 161
Score = 27.7 bits (61), Expect = 3.2
Identities = 19/153 (12%), Positives = 42/153 (27%), Gaps = 27/153 (17%)
Query: 14 LQPGPPVSLKCIATGNPTP---HISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKV 70
L L+C+ P+ ++W + K+ L +
Sbjct: 25 LYISLDAKLRCLVVNLPSDSSLSVTWTRE-----------KSGNLRPDPMVLQEHFNGTY 73
Query: 71 FPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGNVS------- 123
+ + + + CT ++ + SV +
Sbjct: 74 SASSAVPVSTQD-WLSGERFTCTVQHE---ELPLPLSKSVYRNTGPTTPPLIYPFAPHPE 129
Query: 124 AIAGEPLYLGCPVAG-YPIE-SITWQKGVQQLP 154
++ + L C V G P + I W + + +P
Sbjct: 130 ELSLSRVTLSCLVRGFRPRDIEIRWLRDHRAVP 162
>2pnd_A V-SET and immunoglobulin domain containing 4; complement receptor,
IG-like domain, immune system; 1.00A {Mus musculus} PDB:
2icc_A 2ice_S* 2icf_S*
Length = 119
Score = 31.1 bits (70), Expect = 0.15
Identities = 20/118 (16%), Positives = 36/118 (30%), Gaps = 27/118 (22%)
Query: 112 GAPFVRPMGNVSAIAGEPLYLGC---PVAGYPIESITWQKGVQQLPL-------NRRQKV 161
G P ++ +V+ + + C P+ GY + W +
Sbjct: 1 GHPTLKTPESVTGTWKGDVKIQCIYDPLRGYRQVLVKWLVRHGSDSVTIFLRDSTGDHIQ 60
Query: 162 FP--------------NGTLLIENVQKDHDRGVYWCTATNK--QGRSSSQNVHISVTV 203
+ +L I +Q D DR Y C T + G ++ I + V
Sbjct: 61 QAKYRGRLKVSHKVPGDVSLQINTLQMD-DRNHYTCEVTWQTPDGNQVIRDKIIELRV 117
Score = 27.6 bits (61), Expect = 2.0
Identities = 9/25 (36%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Query: 73 NGTLLIENVQKDHDRGVYWCTATNK 97
+ +L I +Q D DR Y C T +
Sbjct: 77 DVSLQINTLQMD-DRNHYTCEVTWQ 100
>3dmm_C T-cell surface glycoprotein CD8 alpha chain; T cell CO-receptor
CD8AB MHC complex, immune response, membrane, MHC I,
phosphoprotein, transmembrane; 2.60A {Mus musculus}
Length = 166
Score = 31.1 bits (70), Expect = 0.20
Identities = 18/111 (16%), Positives = 31/111 (27%), Gaps = 10/111 (9%)
Query: 13 TLQPGPPVSLKCIATGNPTPHISW------KLDGYP---LAGDRHENKNRIGEARVQQLP 63
+ G V L C G+ + SW P + NK E
Sbjct: 20 DAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKL 79
Query: 64 LNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAP 114
+ + L + K+ + G Y+C+ + S V +
Sbjct: 80 FSAMRDTNNKYVLTLNKFSKE-NEGYYFCSVISNSVMYFSSVVPVLQKVNS 129
>3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding
homology region (CHR), cell MEMB disease mutation,
glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo
sapiens}
Length = 483
Score = 31.7 bits (71), Expect = 0.21
Identities = 21/205 (10%), Positives = 49/205 (23%), Gaps = 41/205 (20%)
Query: 12 QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVF 71
+ + G ++ C++ + + + L+
Sbjct: 208 KVILVGSDITFCCVSQEKVLSALIGHTNC-------------------PLIHLDGENVAI 248
Query: 72 PNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGNVSAIAGEPLY 131
I N+ T + + P ++ +
Sbjct: 249 K-----IRNI-SVSASSGTNVVFTTEDNIFGTVIFAGYPPDTPQ-----QLNCETHDLKE 297
Query: 132 LGC-----PVAGYPIESIT-----WQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVY 181
+ C V T + + L R + L+ + + + +
Sbjct: 298 IICSWNPGRVTALVGPRATSYTLVESFSGKYVRLKRAEAPTNESYQLLFQMLPNQEIYNF 357
Query: 182 WCTATNKQG-RSSSQNVHISVTVPP 205
A N G S+ V+I+ V P
Sbjct: 358 TLNAHNPLGRSQSTILVNITEKVYP 382
>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine,
ligand-receptor complex, signaling protein-cytokin; HET:
NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1
Length = 313
Score = 31.1 bits (69), Expect = 0.31
Identities = 16/86 (18%), Positives = 29/86 (33%), Gaps = 6/86 (6%)
Query: 126 AGEPLYLGCPV-----AGYPIESITWQKGVQQLPLNRRQKVFPNGTL-LIENVQKDHDRG 179
G+P+ C + P I W+ G + P R+Q++ +I +H +
Sbjct: 14 LGDPITASCIIKQNCSHLDPEPQILWRLGAELQPGGRQQRLSDGTQESIITLPHLNHTQA 73
Query: 180 VYWCTATNKQGRSSSQNVHISVTVPP 205
C+ V + PP
Sbjct: 74 FLSCSLNWGNSLQILDQVELRAGYPP 99
>1xiw_B T-cell surface glycoprotein CD3 delta chain; CD3-epsilon,
CD3-delta, UCHT1-SCFV, immunoglobulin fold,
antibody-antigen complex; 1.90A {Homo sapiens} SCOP:
b.1.1.4
Length = 79
Score = 28.7 bits (64), Expect = 0.39
Identities = 14/53 (26%), Positives = 19/53 (35%), Gaps = 7/53 (13%)
Query: 142 ESITWQKGVQQLPLNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSS 194
SITW +G L+ L + D RG+Y C T+ S
Sbjct: 18 TSITWVEGTVGTLLSD------ITRLDLGKRILD-PRGIYRCNGTDIYKDKES 63
Score = 25.7 bits (56), Expect = 5.1
Identities = 6/17 (35%), Positives = 8/17 (47%)
Query: 87 RGVYWCTATNKQGRSSS 103
RG+Y C T+ S
Sbjct: 47 RGIYRCNGTDIYKDKES 63
>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin
fold, immune surveillance of cell stress PROT A/B,
MIC-A/B binding, epithelium; 3.04A {Homo sapiens}
Length = 259
Score = 30.6 bits (69), Expect = 0.42
Identities = 31/223 (13%), Positives = 62/223 (27%), Gaps = 61/223 (27%)
Query: 13 TLQPGPPVSLKCIATGNPTPHISW---KLDGYP--LAGDRHENKNRIGEARVQQLPLNRR 67
Q G + C T +I W + P L + + E+ + +
Sbjct: 13 IRQTGSSAEITCDLAEGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGIS----PGK 68
Query: 68 QKVFPNG----TLLIENVQKDHDRGVYWC--------------------TATNKQGRSSS 103
+ + +++ N+ ++ D GVY+C T +
Sbjct: 69 YDTYGSTRKNLRMILRNLIEN-DSGVYYCATWDQNYYKKLFGSGTSLVVTDKQGSADDAK 127
Query: 104 QNVHISVTGAPFVRPMGNVSAIAGEPLYLGCPVAG-YPIESITWQKGVQQLP-------- 154
++ + +VS + + L C + I W ++LP
Sbjct: 128 KDAAKKDGAQKVTQAQSSVSMPVRKAVTLNCLYETSWWSYYIFW---YKRLPSKEMIFLI 184
Query: 155 --LNRRQKVFPNG------------TLLIENVQKDHDRGVYWC 183
+ Q L I +Q + D Y+C
Sbjct: 185 RQGSDEQNAKSGRYSVNFKKAAKSVALTISALQLE-DSAKYFC 226
>2jjs_C Leukocyte surface antigen CD47; signal regulatory protein alpha,
immunoglobulin superfamily, transmembrane,
phosphoprotein, paired receptor; HET: NAG; 1.85A {Homo
sapiens} PDB: 2jjt_C* 2vsc_A*
Length = 127
Score = 29.8 bits (66), Expect = 0.45
Identities = 14/98 (14%), Positives = 26/98 (26%), Gaps = 8/98 (8%)
Query: 20 VSLKCIATGNPTP------HISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPN 73
V + C T N ++ WK G + + Q + +
Sbjct: 19 VVIPCFVT-NMEAQNTTEVYVKWKFKGRDIYTFDGALNKSTVPTDFSSAKIEVSQLLKGD 77
Query: 74 GTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVT 111
+L ++ G Y C T R + +
Sbjct: 78 ASLKMDKSDAVSHTGNYTCEVTELT-REGETIIELKYR 114
Score = 26.7 bits (58), Expect = 4.6
Identities = 7/48 (14%), Positives = 13/48 (27%), Gaps = 1/48 (2%)
Query: 164 NGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAPFE 211
+ +L ++ G Y C T R + + V
Sbjct: 77 DASLKMDKSDAVSHTGNYTCEVTELT-REGETIIELKYRVVSWSTRHH 123
>1xed_A Polymeric-immunoglobulin receptor; IG-like fold, immune system;
1.90A {Homo sapiens} SCOP: b.1.1.1
Length = 117
Score = 29.1 bits (65), Expect = 0.54
Identities = 11/47 (23%), Positives = 16/47 (34%), Gaps = 5/47 (10%)
Query: 65 NRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVT 111
F + I + +D D G Y C R S +V + V
Sbjct: 69 FPENGTF---VVNIAQLSQD-DSGRYKC-GLGINSRGLSFDVSLEVL 110
Score = 29.1 bits (65), Expect = 0.54
Identities = 11/47 (23%), Positives = 16/47 (34%), Gaps = 5/47 (10%)
Query: 156 NRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVT 202
F + I + +D D G Y C R S +V + V
Sbjct: 69 FPENGTF---VVNIAQLSQD-DSGRYKC-GLGINSRGLSFDVSLEVL 110
>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A
1r70_B 3cm9_A
Length = 475
Score = 29.9 bits (67), Expect = 0.91
Identities = 18/80 (22%), Positives = 30/80 (37%), Gaps = 10/80 (12%)
Query: 177 DRGVYWCTATNKQGRSSS-----QNVHISVTVPPKIAPFEF---QPDLHSGDRAGVQCLV 228
D VY+C G S Q ++V+ +P F + CLV
Sbjct: 91 DTAVYYCARDPYGGGKSEFDYWGQGTLVTVSSASPTSPKVFPLSLCSTQPDGNVVIACLV 150
Query: 229 TKGDP--PLTISWLKNGLPI 246
P PL+++W ++G +
Sbjct: 151 QGFFPQEPLSVTWSESGQGV 170
>1xt5_A Variable region-containing chitin-binding protein 3; innate
immunity, VCBP, primordial antigen receptor, florida
lancelet, amphioxus; 1.15A {Branchiostoma floridae}
Length = 135
Score = 28.7 bits (63), Expect = 1.0
Identities = 24/117 (20%), Positives = 39/117 (33%), Gaps = 21/117 (17%)
Query: 16 PGPPVSLKC---IATGNPTPHISW-KLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVF 71
G V L C +A P ISW K + + + + + ++ F
Sbjct: 18 AGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESF 77
Query: 72 P------------NGTLLIENVQKDHDRGVYWCTATNKQGRS----SSQNVHISVTG 112
TL + +V D G YWC R+ +++V + VTG
Sbjct: 78 GDFLGRASVANLAAPTLRLTHVHPQ-DGGRYWCQVAQWSIRTEFGLDAKSVVLKVTG 133
Score = 27.1 bits (59), Expect = 4.0
Identities = 11/39 (28%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
Query: 166 TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVP 204
TL + +V D G YWC R+ SV +
Sbjct: 93 TLRLTHVHPQ-DGGRYWCQVAQWSIRTEFGLDAKSVVLK 130
>3tjh_C 42F3 alpha; IG MHC, antigen recognition, TCR-PMHC, membrane
receptor, IM system; 2.12A {Mus musculus} PDB: 3tpu_A
3tfk_C 1j8h_D* 1fyt_D* 3rev_A 1mwa_A* 1g6r_A* 1tcr_A*
2ckb_A 1zgl_M 3c5z_A 1i9e_A* 2oi9_B 2e7l_A 2icw_I 3e2h_B
3e3q_D
Length = 226
Score = 29.2 bits (65), Expect = 1.0
Identities = 20/95 (21%), Positives = 32/95 (33%), Gaps = 15/95 (15%)
Query: 155 LNRRQKVFPNGTLLIENVQKDHDRGVYWCT-----ATNKQ--GRSSSQNVHISVTVPPKI 207
++ F L +V D VY+C +K G+ + V ++ P
Sbjct: 75 FSKSDSSF---HLRKASVHWS-DSAVYFCAVSAKGTGSKLSFGKGAKLTVSPNIQNPD-- 128
Query: 208 APFEFQPDLHSGDRAGVQCLVTKGDPPLTISWLKN 242
P +Q S CL T D +S K+
Sbjct: 129 -PAVYQLR-DSKSSDKSVCLFTDFDSQTNVSQSKD 161
Score = 26.1 bits (57), Expect = 9.8
Identities = 14/87 (16%), Positives = 30/87 (34%), Gaps = 8/87 (9%)
Query: 11 QQTLQPGPPVSLKCIATGNPTPHISW---KLDGYP-LAGDRHENKNRIGEARVQQLPLNR 66
+ T+ G + L+C + + TP++ W + + + + ++
Sbjct: 18 RVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGLQMLLKYYSGDPVVQGVNGFEAEFSK 77
Query: 67 RQKVFPNGTLLIENVQKDHDRGVYWCT 93
F L +V D VY+C
Sbjct: 78 SDSSF---HLRKASVHWS-DSAVYFCA 100
>1nez_G T-cell surface glycoprotein CD8 alpha chain; immune system; HET:
NAG; 2.10A {Synthetic} SCOP: b.1.1.1 PDB: 1bqh_G*
3b9k_A* 2atp_A* 2arj_R
Length = 128
Score = 28.3 bits (63), Expect = 1.3
Identities = 19/115 (16%), Positives = 34/115 (29%), Gaps = 10/115 (8%)
Query: 13 TLQPGPPVSLKCIATGNPTPHISW------KLDGYP---LAGDRHENKNRIGEARVQQLP 63
+ G V L C G+ + SW P + NK E
Sbjct: 15 DAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKL 74
Query: 64 LNRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRP 118
+ + L + K+ + G Y+C+ + S V + + + P
Sbjct: 75 FSAMRDTNNKYVLTLNKFSKE-NEGYYFCSVISNSVMYFSSVVPVLQKVSSALVP 128
Score = 26.8 bits (59), Expect = 3.6
Identities = 9/44 (20%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Query: 166 TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPPKIAP 209
L + K+ + G Y+C+ + S V + V + P
Sbjct: 86 VLTLNKFSKE-NEGYYFCSVISNSVMYFSSVVPVLQKVSSALVP 128
>3gbl_A BETA2-microglobulin; immune response, immunoglobulin domain, MHC I,
secreted, immune system; 2.10A {Ctenopharyngodon idella}
Length = 97
Score = 27.3 bits (61), Expect = 2.1
Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Query: 202 TVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPP-LTISWLKNGLPI 246
PKI + P G + C V+ PP ++I LKNG I
Sbjct: 2 VSSPKIQVYSHYP-GEYGKENTLICYVSGFHPPDISIELLKNGEVI 46
>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera
phosphorylation, transmembrane, tyrosine-protein kinase,
glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB:
2x10_A* 2x11_A 3mx0_A* 3mbw_A*
Length = 536
Score = 28.6 bits (63), Expect = 2.3
Identities = 19/118 (16%), Positives = 29/118 (24%), Gaps = 16/118 (13%)
Query: 99 GRSSSQNVHISVTGAPFVRPMGNVSAIAGEPLYLGCPVAG---YPIESITWQKGVQQLPL 155
G + ++ T V GE + C V G PI Q G +++
Sbjct: 222 GSDAPSLATVAGTCVD-----HAVVPPGGEEPRMHCAVDGEWLVPIGQCLCQAGYEKVED 276
Query: 156 NRRQKVFPN--------GTLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTVPP 205
+ L G C R+ + T PP
Sbjct: 277 ACQACSPGFFKFEASESPCLECPEHTLPSPEGATSCECEEGFFRAPQDPASMPCTRPP 334
>3s6c_A Beta-2-microglobulin, T-cell surface glycoprotein
membrane-associated; MHC, immunoglobulin domain, immune
system, antigen presentat glycosylation; HET: NAG FUC;
2.90A {Homo sapiens}
Length = 392
Score = 28.5 bits (64), Expect = 2.4
Identities = 9/54 (16%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Query: 114 PFVRPMGNVSAIAGEPLYLGCPVAG-YPIE-SITWQKGVQQLPLNRRQKVFPNG 165
P ++ A G+ +L C V+G +P + + K +++ + +
Sbjct: 5 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSK 58
>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC,
antigen recognition, TCR-PMHC, membrane receptor
system; 2.75A {Mus musculus}
Length = 256
Score = 27.8 bits (62), Expect = 3.4
Identities = 17/90 (18%), Positives = 32/90 (35%), Gaps = 18/90 (20%)
Query: 12 QTLQPGPPVSLKCIATGNPTPHISW---------KLDGYPLAGDRHENKNRIGEARVQQL 62
T+ G + L+C + + TP++ W ++ +GD G +
Sbjct: 13 VTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGPQMLLKYYSGDPVVQ----GVNGFE-- 66
Query: 63 PLNRRQKVFPNGTLLIENVQKDHDRGVYWC 92
K + L +V + D VY+C
Sbjct: 67 --AEFSKSDSSFHLRKASVHRS-DSAVYFC 93
>2ptt_B Natural killer cell receptor 2B4; CD244, CD48, NK cell receptor,
X-RAY, immune system; 1.63A {Mus musculus} PDB: 2ptu_A
1z2k_A
Length = 112
Score = 26.6 bits (58), Expect = 3.8
Identities = 18/101 (17%), Positives = 33/101 (32%), Gaps = 21/101 (20%)
Query: 121 NVSAIAGEPLYLGCPVAGYPIESITWQKGVQQLPLNRRQKVFPNG--------------- 165
V ++G+P+ L S+ W+K Q + N
Sbjct: 11 EVVGVSGKPVQLRPSNIQTKDVSVQWKKTEQGSHRKIEILNWYNDGPSWSNVSFSDIYGF 70
Query: 166 -----TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISV 201
L I++ + D G Y TN G+ ++N + +
Sbjct: 71 DYGDFALSIKSAKL-QDSGHYLLEITNTGGKVCNKNFQLLI 110
>3n06_B PRL-R, prolactin receptor; PH dependence, hematopoietic cytokine,
hormone-hormone recep complex; 2.00A {Homo sapiens} PDB:
3mzg_B 3n0p_B 3ncb_B 1bp3_B 3d48_R 3nce_B 3ncc_B 3ncf_B
3ew3_B 3npz_B 1f6f_B 2lfg_A
Length = 210
Score = 27.4 bits (60), Expect = 3.9
Identities = 22/105 (20%), Positives = 33/105 (31%), Gaps = 5/105 (4%)
Query: 16 PGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENK-NRIGEARVQQLPLNRRQKVFPNG 74
PG P KC + T W+ + +R GE + + P PN
Sbjct: 4 PGKPEIFKCRSPNKETFTCWWRPGTDGGLPTNYSLTYHREGETLMHECPDYITGG--PNS 61
Query: 75 TLLIENVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPM 119
+ + ATN+ G S S + V V+P
Sbjct: 62 CHFGKQYTSMWRTYIMMVNATNQMGSSFSD--ELYVDVTYIVQPD 104
>2q7n_A Leukemia inhibitory factor receptor; cytokine cell surface receptor
complex LIFR LIF, cytokine RE cytokine complex; HET: NAG
FUC MAN; 4.00A {Mus musculus}
Length = 488
Score = 27.6 bits (60), Expect = 4.1
Identities = 18/110 (16%), Positives = 33/110 (30%), Gaps = 2/110 (1%)
Query: 16 PGPPVSLKCIATGNPTPHISWKLDGYPLAGDRHENKNRIGEARVQQLPLNRRQKVFPNGT 75
P P L C SW + + E+ + + R + N T
Sbjct: 287 PDVPQKLSCETHDLKEIICSWNPGRITGLVGPRNTEYTLFESISGKSAVFHRIEGLTNET 346
Query: 76 LLIE-NVQKDHDRGVYWCTATNKQGRSSSQNVHISVTGAPFVRPMGNVSA 124
+ + + + T N G++ S V I+VT ++
Sbjct: 347 YRLGVQMHPGQEIHNFTLTGRNPLGQAQS-AVVINVTERVAPHDPTSLKV 395
>1lk2_B Beta-2-microglobulin; class I MHC-peptide complex, high resolution,
anisotropic AN refinement, immune system; HET: NAG FUC;
1.35A {Mus musculus} SCOP: b.1.1.2 PDB: 1bqh_B 1cd1_B
1fo0_L* 1fzj_B* 1fzm_B* 1fzo_B* 1g6r_L 1fzk_B* 1g7q_B*
1hoc_B 1inq_B 1juf_B 1k8d_B 1kbg_L* 1kj2_L* 1kj3_L
1kpu_B* 1kpv_B* 1ld9_B 1ldp_L* ...
Length = 99
Score = 26.2 bits (58), Expect = 4.1
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 201 VTVPPKIAPFEFQPDLHSGDRAGVQCLVTKGDPP-LTISWLKNGLPI 246
+ P+I + P +G + C VT+ PP + I LKNG I
Sbjct: 1 IQKTPQIQVYSRHP-PENGKPNILNCYVTQFHPPHIEIQMLKNGKKI 46
>1smo_A Triggering receptor expressed on myeloid cells 1; activating
receptors, TREM-1, innate immune system receptor,
system; HET: TLA; 1.47A {Homo sapiens} SCOP: b.1.1.1
Length = 119
Score = 26.7 bits (59), Expect = 4.5
Identities = 9/42 (21%), Positives = 17/42 (40%), Gaps = 3/42 (7%)
Query: 75 TLLIENVQKDHDRGVYWC--TATNKQGRSSSQNVHISVTGAP 114
+ + N+Q + D G+Y C K+ + + VT
Sbjct: 77 RVRMVNLQVE-DSGLYQCVIYQPPKEPHMLFDRIRLVVTKGF 117
>1q8m_A Triggering receptor expressed on myeloid cells 1; V-type IG-like
domain, immunoglobulin-like, immune system receptor;
HET: GSH; 2.60A {Homo sapiens} SCOP: b.1.1.1
Length = 127
Score = 26.7 bits (59), Expect = 4.6
Identities = 8/53 (15%), Positives = 19/53 (35%), Gaps = 8/53 (15%)
Query: 156 NRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSS---SQNVHISVTVPP 205
+ + + N+Q + D G+Y C + + + + VT+
Sbjct: 75 YHDHGLL---RVRMVNLQVE-DSGLYQC-VIYQPPKEPHMLFDRIRLVVTLEH 122
Score = 25.9 bits (57), Expect = 8.9
Identities = 8/50 (16%), Positives = 18/50 (36%), Gaps = 8/50 (16%)
Query: 65 NRRQKVFPNGTLLIENVQKDHDRGVYWCTATNKQGRSS---SQNVHISVT 111
+ + + N+Q + D G+Y C + + + + VT
Sbjct: 75 YHDHGLL---RVRMVNLQVE-DSGLYQC-VIYQPPKEPHMLFDRIRLVVT 119
>3ov6_A Beta-2-microglobulin, T-cell surface glycoprotein cell surface
glycoprotein CD1B; MHC, immunoglobulin domain, immune
system, antigen presentat; HET: NAG D12 MK0; 2.50A {Homo
sapiens}
Length = 397
Score = 27.3 bits (61), Expect = 6.3
Identities = 9/54 (16%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Query: 114 PFVRPMGNVSAIAGEPLYLGCPVAG-YPIE-SITWQKGVQQLPLNRRQKVFPNG 165
P ++ A G+ +L C V+G +P + + K +++ + +
Sbjct: 8 PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSK 61
>4g65_A TRK system potassium uptake protein TRKA; structural genomics,
center for structural genomics of infec diseases, csgid,
niaid; HET: MSE; 2.09A {Vibrio vulnificus}
Length = 461
Score = 26.8 bits (60), Expect = 8.5
Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 3/45 (6%)
Query: 133 GCPVAGYPIESITWQKGVQQLPLNRRQKVF-PNGTLLIENVQKDH 176
V G + I G + R ++V + +IE Q DH
Sbjct: 394 NSKVVGRAVGDIKLPPGTTIGAIVRGEEVLIAHDRTVIE--QDDH 436
>1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein;
2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1
b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A
Length = 368
Score = 26.3 bits (58), Expect = 9.9
Identities = 12/68 (17%), Positives = 23/68 (33%), Gaps = 8/68 (11%)
Query: 11 QQTLQPGPPVSLKCIATGNPTPHISWK-----LDGYPLAGDRHENKNRIGEARVQQLPLN 65
+Q P + + + W + GY + RH ++ G R ++P +
Sbjct: 181 RQKTGLDSPTGIDFSDITANSFTVHWIAPRATITGYRI---RHHPEHFSGRPREDRVPHS 237
Query: 66 RRQKVFPN 73
R N
Sbjct: 238 RNSITLTN 245
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.136 0.429
Gapped
Lambda K H
0.267 0.0777 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,861,032
Number of extensions: 219007
Number of successful extensions: 2563
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1232
Number of HSP's successfully gapped: 674
Length of query: 258
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 166
Effective length of database: 4,133,061
Effective search space: 686088126
Effective search space used: 686088126
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (25.3 bits)