RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14533
(209 letters)
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase,
glycoprotein, receptor protei tyrosine phosphatase, cell
adhesion; HET: NAG; 3.10A {Homo sapiens}
Length = 731
Score = 193 bits (490), Expect = 7e-58
Identities = 47/201 (23%), Positives = 71/201 (35%), Gaps = 6/201 (2%)
Query: 1 DVEWKSQNSGTEQWAVLQDLLPATLYRVRVLAEN--SLGAGRPSDPLLVHTEAEPPTAEP 58
W + + L P T Y + VL G G P L T+ P P
Sbjct: 304 SGSWNDRQPVDSTSYKIGHLDPDTEYEISVLLTRPGEGGTGSPGPALRTRTKCADPMRGP 363
Query: 59 SGLHAVAISSDSIRVTWSPPPAHLTNGDLLGYYLGYREQGFGRQNSYNFTTIPNRSDGAG 118
L V + S I + W P ++T + Y Q G Q + +
Sbjct: 364 RKLEVVEVKSRQITIRWEPFGYNVTRCHSYNLTVHYCYQVGG-QEQVREEVSWDTENSHP 422
Query: 119 VATLTGLRKYRKYDIVVQAFNEKGPGPMSSEVSVQTLEDVPAAPPLDITCSALSSTSLSV 178
T+T L Y + + N +G S E+ VQT ED+P A P + + + +
Sbjct: 423 QHTITNLSPYTNVSVKLILMNPEGRKE-SQELIVQTDEDLPGAVPTESIQGSTFEEKIFL 481
Query: 179 TWQPPPLLLQNGEILGYKVYY 199
W+ P G I Y++ Y
Sbjct: 482 QWREPT--QTYGVITLYEITY 500
Score = 146 bits (370), Expect = 4e-41
Identities = 38/206 (18%), Positives = 69/206 (33%), Gaps = 9/206 (4%)
Query: 2 VEWKSQNSGTEQWAVLQDLLPATLYRVRVLAENSLGAGRPSDPLLVHTEAEPPTAEPSGL 61
E + + +L P T V+++ N G S L+V T+ + P A P+
Sbjct: 411 EEVSWDTENSHPQHTITNLSPYTNVSVKLILMNPEGRK-ESQELIVQTDEDLPGAVPTES 469
Query: 62 HAVAISSDSIRVTWSPPPAHLTNGDLLGYYLGYREQGFGRQNSYNFTTIPNRSDGAGV-- 119
+ + I + W P T G + Y + Y+ S
Sbjct: 470 IQGSTFEEKIFLQWREPTQ--TYGVITLYEITYKAVSSFDPEIDLSNQSGRVSKLGNETH 527
Query: 120 ATLTGLRKYRKYDIVVQAFNEKGPGPMSSEVSVQTLEDVPAAPPLDITCS-ALSSTSLSV 178
GL Y ++A KG GP + T P+ P ++ + +++V
Sbjct: 528 FLFFGLYPGTTYSFTIRASTAKGFGP-PATNQFTTKISAPSMPAYELETPLNQTDNTVTV 586
Query: 179 TWQPPPLLLQNGEILGYKVYYENMRE 204
+P + + Y++ E R
Sbjct: 587 MLKPA--HSRGAPVSVYQIVVEEERP 610
Score = 124 bits (311), Expect = 5e-33
Identities = 24/194 (12%), Positives = 58/194 (29%), Gaps = 14/194 (7%)
Query: 8 NSGTEQWAVLQDLLPATLYRVRVLAENSLGAGRPSDPLLVHTEAEPPTAEPSGLHAVAIS 67
+ + + + R + G G + LV E P + ++
Sbjct: 218 SRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKEPPVP---IAPPQLASVG 274
Query: 68 SDSIRVTWSPPPAHLTNGDLLGYYLGYREQGFGRQNSYNFTTIPNRSDGAGVATLTGLRK 127
+ + + + + +G ++ + Y + + + S + L
Sbjct: 275 ATYLWIQLNANSIN-GDGPIVAREVEYCTASGSWNDRQ---PVDSTS-----YKIGHLDP 325
Query: 128 YRKYDIVVQAFNEK--GPGPMSSEVSVQTLEDVPAAPPLDITCSALSSTSLSVTWQPPPL 185
+Y+I V G G + +T P P + + S +++ W+P
Sbjct: 326 DTEYEISVLLTRPGEGGTGSPGPALRTRTKCADPMRGPRKLEVVEVKSRQITIRWEPFGY 385
Query: 186 LLQNGEILGYKVYY 199
+ V+Y
Sbjct: 386 NVTRCHSYNLTVHY 399
Score = 93.3 bits (231), Expect = 3e-22
Identities = 29/197 (14%), Positives = 48/197 (24%), Gaps = 38/197 (19%)
Query: 3 EWKSQNSGTEQWAVLQDLLPATLYRVRVLAENSLGAGRPSDPLLVHTEAEPPTAEPSGLH 62
+ G E + L P T Y + A + G G P+ + P
Sbjct: 516 SGRVSKLGNETHFLFFGLYPGTTYSFTIRASTAKGFGPPATNQFTTKISAPSMPAYELET 575
Query: 63 AVAISSDSIRVTWSPPPAHLTNGDLLGYYLGYREQGFGRQNSYNFTTI------------ 110
+ + +++ V P + + Y + E+ R
Sbjct: 576 PLNQTDNTVTVMLKPAHSR--GAPVSVYQIVVEEERPRRTKKTTEILKCYPVPIHFQNAS 633
Query: 111 -------------PNRSDGAGVATL-----------TGLRKYRKYDIVVQAFNEKGPGPM 146
+ A T+ T L Y+ Y I QA +
Sbjct: 634 LLNSQYYFAAEFPADSLQAAQPFTIGDNKTYNGYWNTPLLPYKSYRIYFQAASRANGETK 693
Query: 147 SSEVSVQTLEDVPAAPP 163
V V T P
Sbjct: 694 IDCVQVATKGAATPKPV 710
Score = 47.9 bits (113), Expect = 8e-07
Identities = 13/102 (12%), Positives = 28/102 (27%), Gaps = 4/102 (3%)
Query: 100 GRQNSYNFTTIPNRSDGAGVATLTGLRKYRKYDIVVQAFNEKGPGPMSSEVSVQTLEDVP 159
R + + + K E G G + + + P
Sbjct: 205 VRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNY---AELVVKEP 261
Query: 160 AAPPLDITCSALSSTSLSVTWQPPPLLLQNGEILGYKVYYEN 201
P +++ +T L + + +G I+ +V Y
Sbjct: 262 PVPIAPPQLASVGATYLWIQLNANS-INGDGPIVAREVEYCT 302
Score = 39.0 bits (90), Expect = 7e-04
Identities = 9/40 (22%), Positives = 13/40 (32%)
Query: 20 LLPATLYRVRVLAENSLGAGRPSDPLLVHTEAEPPTAEPS 59
LLP YR+ A + D + V T+
Sbjct: 672 LLPYKSYRIYFQAASRANGETKIDCVQVATKGAATPKPVP 711
>3l5i_A Interleukin-6 receptor subunit beta; cytokine receptor, fibronectin
type III domain, alternative cell membrane, disulfide
bond; 1.90A {Homo sapiens} PDB: 3l5j_A
Length = 290
Score = 171 bits (434), Expect = 4e-53
Identities = 34/204 (16%), Positives = 59/204 (28%), Gaps = 15/204 (7%)
Query: 2 VEWKSQNSGTEQWAV----LQDLLPATLYRVRVLAENSLGAGRPSDPLLVHTEAEPPTAE 57
V S + + V L L Y + N +G + L + T
Sbjct: 46 VTLTRWKSHLQNYTVNATKLTVNLTNDRYLATLTVRNLVGKSDAA-VLTIPACDFQATHP 104
Query: 58 PSGLHAVAISSDSIRVTWSPPPAHLTNGDLLGYYLGYREQGFGRQNSYNFTTIPNRSDGA 117
L A + + V W+ P + Y L + ++
Sbjct: 105 VMDLKAFP-KDNMLWVEWTTP-----RESVKKYILEWCVLSDKAPCITDWQQEDGTVHRT 158
Query: 118 GVATLTGLRKYRKYDIVVQAFNEKGPGPMSSEVSVQTLEDVPAAPPLDITCSALSSTSLS 177
L + + Y I V GPG + + P+ P + +
Sbjct: 159 --YLRGNLAESKCYLITVTPVYADGPGS-PESIKAYLKQAPPSKGP-TVRTKKVGKNEAV 214
Query: 178 VTWQPPPLLLQNGEILGYKVYYEN 201
+ W P+ +QNG I Y ++Y
Sbjct: 215 LEWDQLPVDVQNGFIRNYTIFYRT 238
Score = 114 bits (288), Expect = 2e-31
Identities = 26/156 (16%), Positives = 59/156 (37%), Gaps = 10/156 (6%)
Query: 1 DVEWKSQNSGTEQWAVLQDLLPATLYRVRVLAENSLGAGRPSDPLLVHTEAEPPTAEPSG 60
+W+ ++ + + +L + Y + V + G G P + + + PP+ P+
Sbjct: 145 ITDWQQEDGTVHRTYLRGNLAESKCYLITVTPVYADGPGSPE-SIKAYLKQAPPSKGPT- 202
Query: 61 LHAVAISSDSIRVTWSPPPAHLTNGDLLGYYLGYREQGFGRQNSYNFTTIPNRSDGAGVA 120
+ + + + W P + NG + Y + YR N + ++
Sbjct: 203 VRTKKVGKNEAVLEWDQLPVDVQNGFIRNYTIFYRTII---GNETAVNVDSSHTE----Y 255
Query: 121 TLTGLRKYRKYDIVVQAFNEKGPGPMSSEVSVQTLE 156
TL+ L Y + + A+ ++G E + T +
Sbjct: 256 TLSSLTSDTLYMVRMAAYTDEGGKD-GPEFTFTTPK 290
Score = 93.7 bits (233), Expect = 2e-23
Identities = 22/148 (14%), Positives = 46/148 (31%), Gaps = 18/148 (12%)
Query: 52 EPPTAEPSGLHAVAISSDSIRVTWSPPPAHLTNGDLLGYYLGYREQGFGRQNSYNFTTIP 111
+ P+ + ++++ W P NG +L Y + QN T+
Sbjct: 6 KAPSFWYKIDPSHTQGYRTVQLVWKTLPPFEANGKILDYEVTLTRWKSHLQN----YTVN 61
Query: 112 NRSDGAGVATLTGLRKYRKYDIVVQAFNEKGPGPMSSEVSVQTLEDVPAAPPLDITCSAL 171
LT +Y + N G ++ +++ + P +D+ +
Sbjct: 62 A-------TKLTVNLTNDRYLATLTVRNLVGKSD-AAVLTIPACDFQATHPVMDLK-AFP 112
Query: 172 SSTSLSVTWQPPPLLLQNGEILGYKVYY 199
L V W P + Y + +
Sbjct: 113 KDNMLWVEWTTP-----RESVKKYILEW 135
Score = 51.0 bits (122), Expect = 5e-08
Identities = 12/53 (22%), Positives = 20/53 (37%), Gaps = 4/53 (7%)
Query: 156 EDVPAAPP----LDITCSALSSTSLSVTWQPPPLLLQNGEILGYKVYYENMRE 204
ED P+ P ++ + W+ P NG+IL Y+V +
Sbjct: 1 EDRPSKAPSFWYKIDPSHTQGYRTVQLVWKTLPPFEANGKILDYEVTLTRWKS 53
>3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III
domain, oncofetal splice VARI extra-domain B, EIIIB,
ED-B, angiogenesis, integrin; 2.40A {Homo sapiens}
Length = 375
Score = 145 bits (367), Expect = 2e-42
Identities = 41/197 (20%), Positives = 69/197 (35%), Gaps = 23/197 (11%)
Query: 3 EWKSQNSGTEQWAVLQDLLPATLYRVRVLAENSLGAGRPSDPLLVHTEAEPPTAEPSGLH 62
+ + +L P Y V V + S P+ E P + + L
Sbjct: 49 SLEEVVHADQSSCTFDNLSPGLEYNVSVYTVK---DDKESVPISDTIIPEVP--QLTDLS 103
Query: 63 AVAISSDSIRVTWSPPPAHLTNGDLLGYYLGYREQGFGRQNSYNFTTIPNRSDGAGVATL 122
V I+ SI + W+P + ++GY + G G +F T+
Sbjct: 104 FVDITDSSIGLRWTPLN----SSTIIGYRITVVAAGEGIPIFEDFVDSSVGY-----YTV 154
Query: 123 TGLRKYRKYDIVVQAFNEKGPGPMSSEVSVQTLEDVPAAPPLDITCSALSSTSLSVTWQP 182
TGL YDI V G ++ + PP D+ + + ++ VTW P
Sbjct: 155 TGLEPGIDYDISVITLINGGESAPTTLT-----QQTAVPPPTDLRFTNIGPDTMRVTWAP 209
Query: 183 PPLLLQNGEILGYKVYY 199
PP + ++ + V Y
Sbjct: 210 PP----SIDLTNFLVRY 222
Score = 129 bits (326), Expect = 3e-36
Identities = 37/194 (19%), Positives = 70/194 (36%), Gaps = 24/194 (12%)
Query: 9 SGTEQWAVLQDLLPATLYRVRVLAENSLGAGRPSDPLLVHTEAEPPTAEPSGLHAVAISS 68
+ + + L P Y + V+ + G P+ T+ P+ L I
Sbjct: 146 DSSVGYYTVTGLEPGIDYDISVITLINGGESAPTTL----TQQTAVPP-PTDLRFTNIGP 200
Query: 69 DSIRVTWSPPPAHLTNGDLLGYYLGYREQGFGRQNSYNFTTIPNRSDGAGVATLTGLRKY 128
D++RVTW+PPP + DL + + Y + + + + LT L
Sbjct: 201 DTMRVTWAPPP----SIDLTNFLVRYSPVKNEEDVAELSISPSDNA-----VVLTNLLPG 251
Query: 129 RKYDIVVQAFNEKGPGPMSSEVSVQTLEDVPAAPPLDITCSALSSTSLSVTWQPPPLLLQ 188
+Y + V + E+ ++ + P I S +++ S +V W P
Sbjct: 252 TEYVVSVSSVYEQHEST-----PLRGRQKTGLDSPTGIDFSDITANSFTVHWIAP----- 301
Query: 189 NGEILGYKVYYENM 202
I GY++ +
Sbjct: 302 RATITGYRIRHHPE 315
Score = 98.7 bits (246), Expect = 1e-24
Identities = 28/147 (19%), Positives = 56/147 (38%), Gaps = 18/147 (12%)
Query: 54 PTAEPSGLHAVAI-SSDSIRVTWSPPPAHLTNGDLLGYYLGYREQGFGRQNSYNFTTIPN 112
P + P+ LH A + + V+W D+ GY + + NS +
Sbjct: 2 PLSPPTNLHLEANPDTGVLTVSWERST----TPDITGYRITTTPTNGQQGNSLEEVVHAD 57
Query: 113 RSDGAGVATLTGLRKYRKYDIVVQAFNEKGPGPMSSEVSVQTLEDVPAAPPLDITCSALS 172
+S T L +Y++ V + S +S + +VP D++ ++
Sbjct: 58 QS----SCTFDNLSPGLEYNVSVYTVKD---DKESVPISDTIIPEVP--QLTDLSFVDIT 108
Query: 173 STSLSVTWQPPPLLLQNGEILGYKVYY 199
+S+ + W P + I+GY++
Sbjct: 109 DSSIGLRWTPLN----SSTIIGYRITV 131
Score = 96.4 bits (240), Expect = 6e-24
Identities = 32/155 (20%), Positives = 53/155 (34%), Gaps = 19/155 (12%)
Query: 9 SGTEQWAVLQDLLPATLYRVRVLAENSLGAGRPSDPLLVHTEAEPPTAEPSGLHAVAISS 68
S ++ VL +LLP T Y V V + P + P+G+ I++
Sbjct: 237 SPSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPL-----RGRQKTGLDSPTGIDFSDITA 291
Query: 69 DSIRVTWSPPPAHLTNGDLLGYYLGYREQGFGRQNSYNFTTIPNRSDGAGVATLTGLRKY 128
+S V W P + GY + + + F + + S TLT L
Sbjct: 292 NSFTVHWIAP-----RATITGYRIRHHPEHFSGRPREDRVPHSRNS-----ITLTNLTPG 341
Query: 129 RKYDIVVQAFNEKGPGPMSSEVSVQTLEDVPAAPP 163
+Y + + A N + P+ V A
Sbjct: 342 TEYVVSIVALNGREESPLLIG----QQSTVSAHHH 372
Score = 43.3 bits (102), Expect = 3e-05
Identities = 11/43 (25%), Positives = 21/43 (48%), Gaps = 5/43 (11%)
Query: 158 VPAAPPLDITCSALSSTS-LSVTWQPPPLLLQNGEILGYKVYY 199
+P +PP ++ A T L+V+W+ +I GY++
Sbjct: 1 MPLSPPTNLHLEANPDTGVLTVSWERST----TPDITGYRITT 39
>1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein;
2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1
b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A
Length = 368
Score = 144 bits (366), Expect = 3e-42
Identities = 38/197 (19%), Positives = 67/197 (34%), Gaps = 24/197 (12%)
Query: 3 EWKSQNSGTEQWAVLQDLLPATLYRVRVLAENSLGAGRPSDPLLVHTEAEPPTAEPSGLH 62
+ + +L P Y V V S P+ P P+ L
Sbjct: 48 SLEEVVHADQSSCTFDNLSPGLEYNVSVYTVKDDKE---SVPISDTIIPAVPP--PTDLR 102
Query: 63 AVAISSDSIRVTWSPPPAHLTNGDLLGYYLGYREQGFGRQNSYNFTTIPNRSDGAGVATL 122
I D++RVTW+PPP + DL + + Y + + + + L
Sbjct: 103 FTNIGPDTMRVTWAPPP----SIDLTNFLVRYSPVKNEEDVAELSISPSDNA-----VVL 153
Query: 123 TGLRKYRKYDIVVQAFNEKGPGPMSSEVSVQTLEDVPAAPPLDITCSALSSTSLSVTWQP 182
T L +Y + V + E+ ++ + P I S +++ S +V W
Sbjct: 154 TNLLPGTEYVVSVSSVYEQHEST-----PLRGRQKTGLDSPTGIDFSDITANSFTVHWIA 208
Query: 183 PPLLLQNGEILGYKVYY 199
P I GY++ +
Sbjct: 209 P-----RATITGYRIRH 220
Score = 133 bits (336), Expect = 1e-37
Identities = 41/191 (21%), Positives = 71/191 (37%), Gaps = 25/191 (13%)
Query: 9 SGTEQWAVLQDLLPATLYRVRVLAENSLGAGRPSDPLLVHTEAEPPTAEPSGLHAVAISS 68
S ++ VL +LLP T Y V V + P + + P+G+ I++
Sbjct: 145 SPSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPLRG----RQKTGLDS-PTGIDFSDITA 199
Query: 69 DSIRVTWSPPPAHLTNGDLLGYYLGYREQGFGRQNSYNFTTIPNRSDGAGVATLTGLRKY 128
+S V W P + GY + + + F + + S TLT L
Sbjct: 200 NSFTVHWIAP-----RATITGYRIRHHPEHFSGRPREDRVPHSRNS-----ITLTNLTPG 249
Query: 129 RKYDIVVQAFNEKGPGPMSSEVSVQTLEDVPAAPPLDITCSALSSTSLSVTWQPPPLLLQ 188
+Y + + A N + P + + V P D+ A + TSL ++W P
Sbjct: 250 TEYVVSIVALNGREESP----LLIGQQSTVSDVPR-DLEVVAATPTSLLISWDAP----- 299
Query: 189 NGEILGYKVYY 199
+ Y++ Y
Sbjct: 300 AVTVRYYRITY 310
Score = 97.2 bits (242), Expect = 3e-24
Identities = 32/148 (21%), Positives = 57/148 (38%), Gaps = 19/148 (12%)
Query: 53 PPTAEPSGLHAVAIS-SDSIRVTWSPPPAHLTNGDLLGYYLGYREQGFGRQNSYNFTTIP 111
P + P+ LH A + + V+W D+ GY + + NS
Sbjct: 1 PLSP-PTNLHLEANPDTGVLTVSWERST----TPDITGYRITTTPTNGQQGNSLEEVVHA 55
Query: 112 NRSDGAGVATLTGLRKYRKYDIVVQAFNEKGPGPMSSEVSVQTLEDVPAAPPLDITCSAL 171
++S T L +Y++ V + S +S + VP PP D+ + +
Sbjct: 56 DQSS----CTFDNLSPGLEYNVSVYTVKD---DKESVPISDTIIPAVP--PPTDLRFTNI 106
Query: 172 SSTSLSVTWQPPPLLLQNGEILGYKVYY 199
++ VTW PPP + ++ + V Y
Sbjct: 107 GPDTMRVTWAPPP----SIDLTNFLVRY 130
Score = 96.8 bits (241), Expect = 4e-24
Identities = 32/147 (21%), Positives = 53/147 (36%), Gaps = 16/147 (10%)
Query: 9 SGTEQWAVLQDLLPATLYRVRVLAENSLGAGRPSDPLLVHTEAEPPTAEPSGLHAVAISS 68
+ L +L P T Y V ++A N + ++ P L VA +
Sbjct: 235 PHSRNSITLTNLTPGTEYVVSIVALNGREESPLL----IGQQSTVSDV-PRDLEVVAATP 289
Query: 69 DSIRVTWSPPPAHLTNGDLLGYYLGYREQGFGRQNSYNFTTIPNRSDGAGVATLTGLRKY 128
S+ ++W P + Y + Y E G + AT++GL+
Sbjct: 290 TSLLISWDAP-----AVTVRYYRITYGETGGNSPVQEFTVPGSKST-----ATISGLKPG 339
Query: 129 RKYDIVVQAFNEKGPGPMSSE-VSVQT 154
Y I V A +G P SS+ +S+
Sbjct: 340 VDYTITVYAVTGRGDSPASSKPISINY 366
>3f7q_A Integrin beta-4, GP150; hemidesmosome, cell adhesion, carcinoma,
epidermolysis bullosa, alternative splicing, disease
mutation, glycoprotein; HET: 1PE PG4; 1.75A {Homo
sapiens} PDB: 3f7r_A 3f7p_C 1qg3_A
Length = 234
Score = 140 bits (354), Expect = 9e-42
Identities = 38/192 (19%), Positives = 71/192 (36%), Gaps = 10/192 (5%)
Query: 1 DVEWKSQN-SGTEQWAVLQDLLPATLYRVRVLAENSLGAGRPSDPLLVHTEAEPPTAEPS 59
D E ++ L +L P Y ++V A + G G S + T E P+ P
Sbjct: 45 DSESEAHLLDSKVPSVELTNLYPYCDYEMKVCAYGAQGEGPYSSLVSCRTHQEVPSE-PG 103
Query: 60 GLHAVAISSDSIRVTWSPPPAHLTNGDLLGYYLGYREQGFGRQNSYNFTTIPNRSDGAGV 119
L +SS +++W+ P NG++ Y + Y + + + +
Sbjct: 104 RLAFNVVSSTVTQLSWAEPAET--NGEITAYEVCYGLVNDDNRPIGPMKKVLVDNPKNRM 161
Query: 120 ATLTGLRKYRKYDIVVQAFNEKGPGPMSSE-VSVQTLEDVPAAPPLDITCSALSSTSLS- 177
+ LR+ + Y V+A N G GP +++ T P + P+ + + S
Sbjct: 162 LLIENLRESQPYRYTVKARNGAGWGPEREAIINLATQPKRPMSIPIIPDIPIVDAQSGED 221
Query: 178 ----VTWQPPPL 185
+ + L
Sbjct: 222 YDSFLMYSDDVL 233
Score = 137 bits (348), Expect = 7e-41
Identities = 45/155 (29%), Positives = 68/155 (43%), Gaps = 15/155 (9%)
Query: 50 EAEPPTAEPSGLHAVAISSDSIRVTWSPPPAHLTNGDLLGYYLGYREQGFGRQNSYNFTT 109
A P +A A S I W PP +G +GY + Y QG ++ +
Sbjct: 2 SHMDLGA-PQNPNAKAAGSRKIHFNWLPP-----SGKPMGYRVKYWIQGDSESEAHLLDS 55
Query: 110 IPNRSDGAGVATLTGLRKYRKYDIVVQAFNEKGPGPMSSEVSVQTLEDVPAAPPLDITCS 169
LT L Y Y++ V A+ +G GP SS VS +T ++VP+ P + +
Sbjct: 56 KVPS------VELTNLYPYCDYEMKVCAYGAQGEGPYSSLVSCRTHQEVPSEPG-RLAFN 108
Query: 170 ALSSTSLSVTWQPPPLLLQNGEILGYKVYYENMRE 204
+SST ++W P NGEI Y+V Y + +
Sbjct: 109 VVSSTVTQLSWAEP--AETNGEITAYEVCYGLVND 141
>2edx_A Protein tyrosine phosphatase, receptor type, F; LAR protein,
leukocyte antigen related, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 134
Score = 136 bits (344), Expect = 2e-41
Identities = 43/136 (31%), Positives = 64/136 (47%), Gaps = 3/136 (2%)
Query: 37 GAGRPSDPLLVHTEAEPPTAEPSGLHAVAISSDSIRVTWSPPPAHLTNGDLLGYYLGYRE 96
G+ S + T P+A P + V++ S ++RV+W PPPA NG + Y + Y
Sbjct: 1 GSSGSSGTIEARTAQSTPSAPPQKVMCVSMGSTTVRVSWVPPPADSRNGVITQYSVAYEA 60
Query: 97 QGFGRQNSYNFTTIPNRSDGAGVATLTGLRKYRKYDIVVQAFNEKGPGPMSSEVSVQTLE 156
+ + I L GL K+ +Y + V+A + GPGP SS V V+T E
Sbjct: 61 VDGEDRGRHVVDGISREHS---SWDLVGLEKWTEYRVWVRAHTDVGPGPESSPVLVRTDE 117
Query: 157 DVPAAPPLDITCSALS 172
DVP+ PP + S
Sbjct: 118 DVPSGPPRKVESGPSS 133
Score = 90.9 bits (226), Expect = 9e-24
Identities = 21/58 (36%), Positives = 32/58 (55%)
Query: 142 GPGPMSSEVSVQTLEDVPAAPPLDITCSALSSTSLSVTWQPPPLLLQNGEILGYKVYY 199
G S + +T + P+APP + C ++ ST++ V+W PPP +NG I Y V Y
Sbjct: 1 GSSGSSGTIEARTAQSTPSAPPQKVMCVSMGSTTVRVSWVPPPADSRNGVITQYSVAY 58
Score = 59.3 bits (144), Expect = 8e-12
Identities = 19/59 (32%), Positives = 26/59 (44%)
Query: 9 SGTEQWAVLQDLLPATLYRVRVLAENSLGAGRPSDPLLVHTEAEPPTAEPSGLHAVAIS 67
S L L T YRV V A +G G S P+LV T+ + P+ P + + S
Sbjct: 75 SREHSSWDLVGLEKWTEYRVWVRAHTDVGPGPESSPVLVRTDEDVPSGPPRKVESGPSS 133
>1cfb_A Drosophila neuroglian; neural adhesion molecule; HET: NAG; 2.00A
{Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1
Length = 205
Score = 138 bits (349), Expect = 2e-41
Identities = 31/159 (19%), Positives = 59/159 (37%), Gaps = 8/159 (5%)
Query: 3 EWKSQNS--GTEQWAVLQDLLPATLYRVRVLAENSLGAGRPSDP-LLVHTEAEPPTAEPS 59
W + + + + P Y RV+A N +GA PS T+ + P P
Sbjct: 50 SWDAAYEKVPNTDSSFVVQMSPWANYTFRVIAFNKIGASPPSAHSDSCTTQPDVPFKNPD 109
Query: 60 GLHAVAISSDSIRVTWSPPPAHLTNGDLLGYYLGYREQGFGRQNSYNFTTIPNRSDGAGV 119
+ +++ ++W+P P N YY+ ++ + +
Sbjct: 110 NVVGQGTEPNNLVISWTPMPEIEHNAPNFHYYVSWKRDI----PAAAWENNNIFDWRQNN 165
Query: 120 ATLTGLRKYRKYDIVVQAFNEKGPGPMSSE-VSVQTLED 157
+ + KY I V A N++G +++E V + ED
Sbjct: 166 IVIADQPTFVKYLIKVVAINDRGESNVAAEEVVGYSGED 204
Score = 118 bits (298), Expect = 1e-33
Identities = 30/149 (20%), Positives = 53/149 (35%), Gaps = 9/149 (6%)
Query: 52 EPPTAEPSGLHAVAISSDSIRVTWSPPPAHLTNGDLLGYYLGYREQGFGRQNSYNFTTIP 111
+ P A P + +D + W + +L Y + + + +P
Sbjct: 4 DVPNA-PKLTG-ITCQADKAEIHWEQQGDN--RSPILHYTIQFNTSFTPASWDAAYEKVP 59
Query: 112 NRSDGAGVATLTGLRKYRKYDIVVQAFNEKGPGPMSSEV-SVQTLEDVPAAPPLDITCSA 170
N + + + + Y V AFN+ G P S+ S T DVP P ++
Sbjct: 60 NTD----SSFVVQMSPWANYTFRVIAFNKIGASPPSAHSDSCTTQPDVPFKNPDNVVGQG 115
Query: 171 LSSTSLSVTWQPPPLLLQNGEILGYKVYY 199
+L ++W P P + N Y V +
Sbjct: 116 TEPNNLVISWTPMPEIEHNAPNFHYYVSW 144
Score = 35.5 bits (82), Expect = 0.006
Identities = 12/50 (24%), Positives = 18/50 (36%), Gaps = 6/50 (12%)
Query: 156 EDVPAAP-PLDITCSALSSTSLSVTWQPPPLLLQNGEILGYKVYYENMRE 204
+DVP AP ITC + + W+ IL Y + +
Sbjct: 3 QDVPNAPKLTGITCQ---ADKAEIHWEQQGD--NRSPILHYTIQFNTSFT 47
>3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A
{Homo sapiens} PDB: 1fnh_A
Length = 290
Score = 139 bits (353), Expect = 5e-41
Identities = 41/192 (21%), Positives = 66/192 (34%), Gaps = 24/192 (12%)
Query: 9 SGTEQWAVLQDLLPATLYRVRVLAENSLGAGRPSDPLLVHTEAEPPTAEPSGLHAVAISS 68
+ V+ L+ AT Y V V A RP+ ++ E P P +
Sbjct: 70 APDSSSVVVSGLMVATKYEVSVYALKDTLTSRPAQGVVTTLENVSP---PRRARVTDATE 126
Query: 69 DSIRVTWSPPPAHLTNGDLLGYYLGYREQGFGRQNSYNFTTIPNRSDGAGVATLTGLRKY 128
+I ++W + G+ + G+ RS T+TGL+
Sbjct: 127 TTITISWRTK-----TETITGFQVDAVPAN-GQTPIQRTIKPDVRS-----YTITGLQPG 175
Query: 129 RKYDIVVQAFNEKGPGPMSSEVSVQTLEDVPAAPPLDITCSALSSTSLSVTWQPPPLLLQ 188
Y I + N+ V + + P ++ A + SL V+WQPP
Sbjct: 176 TDYKIYLYTLNDNARSS---PVVIDASTAID--APSNLRFLATTPNSLLVSWQPP----- 225
Query: 189 NGEILGYKVYYE 200
I GY + YE
Sbjct: 226 RARITGYIIKYE 237
Score = 117 bits (294), Expect = 3e-32
Identities = 30/169 (17%), Positives = 58/169 (34%), Gaps = 22/169 (13%)
Query: 31 LAENSLGAGRPSDPLLVHTEAEPPTAEPSGLHAVAISSDSIRVTWSPPPAHLTNGDLLGY 90
+A + S L V + A P+ L ++ S+ W+PP N L GY
Sbjct: 1 MAHH---HHHHSSGLEVLFQGPAIPA-PTDLKFTQVTPTSLSAQWTPP-----NVQLTGY 51
Query: 91 YLGYREQGFGRQNSYNFTTIPNRSDGAGVATLTGLRKYRKYDIVVQAFNEKGPGPMSSEV 150
+ + + S ++GL KY++ V A + + V
Sbjct: 52 RVRVTPKEKTGPMKEINLAPDSSS-----VVVSGLMVATKYEVSVYALKDTLTSRPAQGV 106
Query: 151 SVQTLEDVPAAPPLDITCSALSSTSLSVTWQPPPLLLQNGEILGYKVYY 199
+PP + + T+++++W+ I G++V
Sbjct: 107 VTTL---ENVSPPRRARVTDATETTITISWRTK-----TETITGFQVDA 147
Score = 92.6 bits (230), Expect = 5e-23
Identities = 30/153 (19%), Positives = 51/153 (33%), Gaps = 17/153 (11%)
Query: 3 EWKSQN-SGTEQWAVLQDLLPATLYRVRVLAENSLGAGRPSDPLLVHTEAEPPTAEPSGL 61
+ + + L P T Y++ + N S P+++ PS L
Sbjct: 154 TPIQRTIKPDVRSYTITGLQPGTDYKIYLYTLNDNA---RSSPVVIDASTAID--APSNL 208
Query: 62 HAVAISSDSIRVTWSPPPAHLTNGDLLGYYLGYREQGFGRQNSYNFTTIPNRSDGAGVAT 121
+A + +S+ V+W PP + GY + Y + G + AT
Sbjct: 209 RFLATTPNSLLVSWQPP-----RARITGYIIKYEKPGSPPREVVPRPRPGVTE-----AT 258
Query: 122 LTGLRKYRKYDIVVQAFNEKGPGPMSSEVSVQT 154
+TGL +Y I V A +T
Sbjct: 259 ITGLEPGTEYTIYVIALKNNQKSE-PLIGRKKT 290
>3p4l_A Neogenin; iron homeostasis, hemojuvelin receptor, FNIII domain,
fibron type III, cell adhesion; 1.80A {Homo sapiens}
PDB: 1x5k_A
Length = 211
Score = 136 bits (345), Expect = 1e-40
Identities = 42/163 (25%), Positives = 63/163 (38%), Gaps = 12/163 (7%)
Query: 51 AEPPTAEPSGLHAVAISSDSIRVTWSPP--PAHLTNGDLLGYYLGYREQGFGRQNSYNFT 108
A+ P P G+ A +S D+IR+TW+ P H D Y + ++ N
Sbjct: 1 ADLPMMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNAN 60
Query: 109 TIPNRSDGAGVATLTGLRKYRKYDIVVQAFNEKGPGPMSSEVSVQTLEDVPAAPPLDITC 168
+TGL+ Y+ V + S T E VP +PP D+T
Sbjct: 61 ATTLS------YLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGTTFELVPTSPPKDVTV 114
Query: 169 SA--LSSTSLSVTWQPPPLLLQNGEILGYKVYYENMRELPMGK 209
+ ++ V WQPP NG+I GY +YY +
Sbjct: 115 VSKEGKPKTIIVNWQPPSE--ANGKITGYIIYYSTDVNAEIHD 155
Score = 126 bits (317), Expect = 1e-36
Identities = 37/157 (23%), Positives = 55/157 (35%), Gaps = 11/157 (7%)
Query: 9 SGTEQWAVLQDLLPATLYRVRVLAENSLGAGRPSDPLLVHTEAEPPTAEPSGLHAVA--I 66
+ T ++ L P TLY V+ + S T PT+ P + V+
Sbjct: 60 NATTLSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGTTFELVPTSPPKDVTVVSKEG 119
Query: 67 SSDSIRVTWSPPPAHLTNGDLLGYYLGYREQGFGRQNSYNFTTIPNRSDGAGVATLTGLR 126
+I V W PP NG + GY + Y + + + + L
Sbjct: 120 KPKTIIVNWQPPSEA--NGKITGYIIYYSTDVNAEIHDWVIEPVVGNRL---THQIQELT 174
Query: 127 KYRKYDIVVQAFNEKGPGPMSSEVSVQTLEDVPAAPP 163
Y +QA N KG GPMS V +T + A
Sbjct: 175 LDTPYYFKIQARNSKGMGPMSEAVQFRTPK----AHH 207
>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane,
disulfide bond, glycoprotein, immunoglobulin domain,
membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A
{Homo sapiens}
Length = 589
Score = 140 bits (355), Expect = 3e-39
Identities = 34/202 (16%), Positives = 59/202 (29%), Gaps = 15/202 (7%)
Query: 2 VEWKSQNSGTEQWAV----LQDLLPATLYRVRVLAENSLGAGRPSDPLLVHTEAEPPTAE 57
V S + + V L L Y + N +G + L + T
Sbjct: 345 VTLTRWKSHLQNYTVNATKLTVNLTNDRYLATLTVRNLVGKSDAA-VLTIPACDFQATHP 403
Query: 58 PSGLHAVAISSDSIRVTWSPPPAHLTNGDLLGYYLGYREQGFGRQNSYNFTTIPNRSDGA 117
L A + + V W+ P + Y L + ++
Sbjct: 404 VMDLKAF-PKDNMLWVEWTTPR-----ESVKKYILEWCVLSDKAPCITDWQQEDGTVHRT 457
Query: 118 GVATLTGLRKYRKYDIVVQAFNEKGPGPMSSEVSVQTLEDVPAAPPLDITCSALSSTSLS 177
L + + Y I V GPG + + P+ P + +
Sbjct: 458 --YLRGNLAESKCYLITVTPVYADGPGS-PESIKAYLKQAPPSKGP-TVRTKKVGKNEAV 513
Query: 178 VTWQPPPLLLQNGEILGYKVYY 199
+ W P+ +QNG I Y ++Y
Sbjct: 514 LEWDQLPVDVQNGFIRNYTIFY 535
Score = 129 bits (326), Expect = 3e-35
Identities = 42/207 (20%), Positives = 74/207 (35%), Gaps = 15/207 (7%)
Query: 2 VEWKSQNSGTEQWAVLQDLLPATLYRVRVLAENSLGAGRPSDPLLVHTEAEPPTAEPSGL 61
+ K++ V + V V AEN+LG SD + + P L
Sbjct: 147 ADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAENALGKV-TSDHINFDPVYKVKPNPPHNL 205
Query: 62 HAVAIS--SDSIRVTWSPPPAHLTNGDLLGYYLGYREQGFGRQNSYNFTTIPNRSDGAGV 119
+ S +++TW+ P + + +L Y + YR + + +
Sbjct: 206 SVINSEELSSILKLTWTNPS--IKSVIILKYNIQYRTKDASTWSQIPPEDTASTR---SS 260
Query: 120 ATLTGLRKYRKYDIVVQAFNEKGPGPMS---SEVSVQTLEDVPAAP----PLDITCSALS 172
T+ L+ + +Y ++ E G G S E S T ED P+
Sbjct: 261 FTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYEDRPSKAPSFWYKIDPSHTQG 320
Query: 173 STSLSVTWQPPPLLLQNGEILGYKVYY 199
++ + W+ P NG+IL Y+V
Sbjct: 321 YRTVQLVWKTLPPFEANGKILDYEVTL 347
Score = 128 bits (322), Expect = 1e-34
Identities = 40/212 (18%), Positives = 66/212 (31%), Gaps = 25/212 (11%)
Query: 1 DVEWKSQN----SGTEQWAVLQDLLPATLYRVRVLAENSLGAGRPSDP---LLVHTEAEP 53
W + T +QDL P T Y R+ G G SD T +
Sbjct: 243 ASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYEDR 302
Query: 54 PTAEPSGLHAVAIS----SDSIRVTWSPPPAHLTNGDLLGYYLGYREQGFGRQNSYNFTT 109
P+ PS + + S ++++ W P NG +L Y + QN Y
Sbjct: 303 PSKAPSFWYKIDPSHTQGYRTVQLVWKTLPPFEANGKILDYEVTLTRWKSHLQN-YTVNA 361
Query: 110 IPNRSDGAGVATLTGLRKYRKYDIVVQAFNEKGPGPMSSEVSVQTLEDVPAAPPLDITCS 169
LT +Y + N G ++ +++ + P +
Sbjct: 362 T----------KLTVNLTNDRYLATLTVRNLVGKSD-AAVLTIPACDFQATHPV-MDLKA 409
Query: 170 ALSSTSLSVTWQPPPLLLQNGEILGYKVYYEN 201
L V W P ++ IL + V +
Sbjct: 410 FPKDNMLWVEWTTPRESVK-KYILEWCVLSDK 440
Score = 108 bits (270), Expect = 2e-27
Identities = 25/156 (16%), Positives = 58/156 (37%), Gaps = 10/156 (6%)
Query: 1 DVEWKSQNSGTEQWAVLQDLLPATLYRVRVLAENSLGAGRPSDPLLVHTEAEPPTAEPSG 60
+W+ ++ + + +L + Y + V + G G + + + + PP+
Sbjct: 444 ITDWQQEDGTVHRTYLRGNLAESKCYLITVTPVYADGPG-SPESIKAYLKQAPPSK-GPT 501
Query: 61 LHAVAISSDSIRVTWSPPPAHLTNGDLLGYYLGYREQGFGRQNSYNFTTIPNRSDGAGVA 120
+ + + + W P + NG + Y + YR G + + N +
Sbjct: 502 VRTKKVGKNEAVLEWDQLPVDVQNGFIRNYTIFYRTII-GNETAVNVDSSHTE------Y 554
Query: 121 TLTGLRKYRKYDIVVQAFNEKGPGPMSSEVSVQTLE 156
TL+ L Y + + A+ ++G E + T +
Sbjct: 555 TLSSLTSDTLYMVRMAAYTDEGGKD-GPEFTFTTPK 589
Score = 85.8 bits (212), Expect = 9e-20
Identities = 29/178 (16%), Positives = 53/178 (29%), Gaps = 17/178 (9%)
Query: 24 TLYRVRVLAENSLGAGRPSDPLLVHTEAEPPTAEPSGLHAVAISSDSIRVTWSPPPAHLT 83
+L L + + + P +P L + +R W T
Sbjct: 76 IQLTCNILTFGQLE----QNVYGITIISGLPPEKPKNLSCIVNEGKKMRCEWDGG--RET 129
Query: 84 NGDLLGYYLGYREQGFGRQNSYNFTTIPNRSDGAGVATLTGLRKYRKYDIVVQAFNEKGP 143
+ + + L R + ++ V+A N G
Sbjct: 130 HLET-NFTLKSEWAT-----HKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAENALGK 183
Query: 144 GPMSSEVSVQTLEDVPAAPP--LDITCSALSSTSLSVTWQPPPLLLQNGEILGYKVYY 199
S ++ + V PP L + S S+ L +TW P + ++ IL Y + Y
Sbjct: 184 VT-SDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSI--KSVIILKYNIQY 238
>2ed9_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 124
Score = 127 bits (321), Expect = 3e-38
Identities = 38/130 (29%), Positives = 60/130 (46%), Gaps = 7/130 (5%)
Query: 28 VRVLAENSLGAGRPSDPLLVHTEAEPPTAEPSGLHAVAISSDSIRVTWSPPPAHLTNGDL 87
+ N G G +D + V T ++ P+A P + ++S SI+V+W PPP+ NG +
Sbjct: 2 SSGSSGNRYGPGVSTDDITVVTLSDVPSAPPQNVSLEVVNSRSIKVSWLPPPSGTQNGFI 61
Query: 88 LGYYLGYREQGFGRQNSYNFTTIPNRSDGAGVATLTGLRKYRKYDIVVQAFNEKGPGPMS 147
GY + +R+ + T PN TGL K +Y V A G GP S
Sbjct: 62 TGYKIRHRKTT---RRGEMETLEPNNLW----YLFTGLEKGSQYSFQVSAMTVNGTGPPS 114
Query: 148 SEVSVQTLED 157
+ + +T E+
Sbjct: 115 NWYTAETPEN 124
Score = 106 bits (266), Expect = 7e-30
Identities = 27/67 (40%), Positives = 42/67 (62%)
Query: 133 IVVQAFNEKGPGPMSSEVSVQTLEDVPAAPPLDITCSALSSTSLSVTWQPPPLLLQNGEI 192
+ N GPG + +++V TL DVP+APP +++ ++S S+ V+W PPP QNG I
Sbjct: 2 SSGSSGNRYGPGVSTDDITVVTLSDVPSAPPQNVSLEVVNSRSIKVSWLPPPSGTQNGFI 61
Query: 193 LGYKVYY 199
GYK+ +
Sbjct: 62 TGYKIRH 68
Score = 48.5 bits (116), Expect = 6e-08
Identities = 10/42 (23%), Positives = 14/42 (33%)
Query: 9 SGTEQWAVLQDLLPATLYRVRVLAENSLGAGRPSDPLLVHTE 50
W + L + Y +V A G G PS+ T
Sbjct: 81 EPNNLWYLFTGLEKGSQYSFQVSAMTVNGTGPPSNWYTAETP 122
>1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins,
protein-protein interactions, C-type lectin domain;
2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1
Length = 283
Score = 131 bits (331), Expect = 9e-38
Identities = 34/192 (17%), Positives = 63/192 (32%), Gaps = 23/192 (11%)
Query: 9 SGTEQWAVLQDLLPATLYRVRVLAENSLGAGRPSDPLLVHTEAEPPTAEPSGLHAVAISS 68
+Q L P + Y V + A S T+ P L + ++
Sbjct: 64 QPPLSQYSVQALRPGSRYEVSISAVRGTNESDAS-----STQFTTEIDAPKNLRVGSRTA 118
Query: 69 DSIRVTWSPPPAHLTNGDLLGYYLGYREQGFGRQNSYNFTTIPNRSDGAGVATLTGLRKY 128
S+ + W + Y + Y + + +P TLT L
Sbjct: 119 TSLDLEWDNSE-----AEAQEYKVVYSTLAGEQYHE---VLVPKGIGPTTKTTLTDLVPG 170
Query: 129 RKYDIVVQAFNEKGPGPMSSEVSVQTLEDVPAAPPLDITCSALSSTSLSVTWQPPPLLLQ 188
+Y + + A + ++ +T D P D+ +A S TS+S+ W
Sbjct: 171 TEYGVGISAVMNSKQSI-PATMNARTELD----SPRDLMVTASSETSISLIWTKA----- 220
Query: 189 NGEILGYKVYYE 200
+G I Y++ +
Sbjct: 221 SGPIDHYRITFT 232
Score = 101 bits (253), Expect = 2e-26
Identities = 28/158 (17%), Positives = 47/158 (29%), Gaps = 20/158 (12%)
Query: 42 SDPLLVHTEAEPPTAEPSGLHAVAISSDSIRVTWSPPPAHLTNGDLLGYYLGYREQGFGR 101
S + P P+ + +S V W+PP + L Y G
Sbjct: 2 SPGISGGGGGIPVIDGPTQILVRDVSDTVAFVEWTPPR-----AKVDFILLKYGLVGGEG 56
Query: 102 QNSYNFTTIPNRSDGAGVATLTGLRKYRKYDIVVQAFNEKGPGPMSSEVSVQTLEDVPAA 161
+ P ++ LR +Y++ + A SS
Sbjct: 57 GKTTFRLQPPLSQ-----YSVQALRPGSRYEVSISAVRGTNESDASSTQFT-----TEID 106
Query: 162 PPLDITCSALSSTSLSVTWQPPPLLLQNGEILGYKVYY 199
P ++ + ++TSL + W E YKV Y
Sbjct: 107 APKNLRVGSRTATSLDLEWDNSE-----AEAQEYKVVY 139
Score = 83.7 bits (207), Expect = 9e-20
Identities = 34/151 (22%), Positives = 52/151 (34%), Gaps = 18/151 (11%)
Query: 4 WKSQNSGTEQWAVLQDLLPATLYRVRVLAENSLGAGRPSDPLLVHTEAEPPTAEPSGLHA 63
+ G L DL+P T Y V + A + S P ++ E + P L
Sbjct: 151 LVPKGIGPTTKTTLTDLVPGTEYGVGISAVMNSK---QSIPATMNARTELDS--PRDLMV 205
Query: 64 VAISSDSIRVTWSPPPAHLTNGDLLGYYLGYREQGFGRQNSYNFTTIPNRSDGAGVATLT 123
A S SI + W+ +G + Y + + S T +R+ TLT
Sbjct: 206 TASSETSISLIWTKA-----SGPIDHYRITFTPSS---GISSEVTVPRDRT----SYTLT 253
Query: 124 GLRKYRKYDIVVQAFNEKGPGPMSSEVSVQT 154
L +Y I + A + S V T
Sbjct: 254 DLEPGAEYIISITAERGRQQSL-ESTVDAFT 283
Score = 36.7 bits (85), Expect = 0.003
Identities = 8/42 (19%), Positives = 12/42 (28%)
Query: 1 DVEWKSQNSGTEQWAVLQDLLPATLYRVRVLAENSLGAGRPS 42
+ + L DL P Y + + AE S
Sbjct: 236 GISSEVTVPRDRTSYTLTDLEPGAEYIISITAERGRQQSLES 277
>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera
phosphorylation, transmembrane, tyrosine-protein kinase,
glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB:
2x10_A* 2x11_A 3mx0_A* 3mbw_A*
Length = 536
Score = 134 bits (338), Expect = 4e-37
Identities = 40/157 (25%), Positives = 57/157 (36%), Gaps = 10/157 (6%)
Query: 1 DVEWKSQNSGTEQWAVLQDLLPATLYRVRVLAENSLGAGRPSDPLLVHTEAEPPTAEPSG 60
+ + T + DL P Y V A N + S + + T P
Sbjct: 388 VRYSEPPHGLTRTSVTVSDLEPHMNYTFTVEARNGVSGLVTSRSFRTASVSINQTE-PPK 446
Query: 61 LHAVAISSDSIRVTWSPPPAHLTNGDLLGYYLGYREQGFGRQNSYNFTTIPNRSDGAGVA 120
+ S+ S+ V+WS PP + Y + YR++G NSYN S
Sbjct: 447 VRLEGRSTTSLSVSWSIPPPQ--QSRVWKYEVTYRKKGDS--NSYNVRRTEGFS-----V 497
Query: 121 TLTGLRKYRKYDIVVQAFNEKGPGPMSSEVSVQTLED 157
TL L Y + VQA ++G G S QTL
Sbjct: 498 TLDDLAPDTTYLVQVQALTQEGQGAGSKVHEFQTLSP 534
Score = 114 bits (286), Expect = 7e-30
Identities = 31/168 (18%), Positives = 50/168 (29%), Gaps = 11/168 (6%)
Query: 37 GAGRPSDPLLVHTEAEPPTAEPSGLHAVAISSDSIRVTWSPPPAHLTNGDLLGYYLGYRE 96
G R PP + + W+PP + + Y + +
Sbjct: 317 GFFRAPQDPASMPCTRPP--SAPHYLTAVGMGAKVELRWTPP-QDSGGREDIVYSVTCEQ 373
Query: 97 QGFGRQNSYNFTTIPNRSDGAGV-----ATLTGLRKYRKYDIVVQAFNEKGPGPMSSEVS 151
S+ T++ L + Y V+A N S
Sbjct: 374 CWPESGECGPCEASVRYSEPPHGLTRTSVTVSDLEPHMNYTFTVEARNGVSGLVTSRSFR 433
Query: 152 VQTLEDVPAAPPLDITCSALSSTSLSVTWQPPPLLLQNGEILGYKVYY 199
++ PP + S+TSLSV+W PP Q + Y+V Y
Sbjct: 434 TASVSINQTEPP-KVRLEGRSTTSLSVSWSIPP--PQQSRVWKYEVTY 478
Score = 42.8 bits (100), Expect = 3e-05
Identities = 10/55 (18%), Positives = 18/55 (32%), Gaps = 2/55 (3%)
Query: 147 SSEVSVQTLEDVPAAPPLDITCSALSSTSLSVTWQPPPLLLQNGEILGYKVYYEN 201
+ + P + P +T + + + W PP E + Y V E
Sbjct: 321 APQDPASMPCTRPPSAPHYLT-AVGMGAKVELRWT-PPQDSGGREDIVYSVTCEQ 373
>1va9_A DOWN syndrome cell adhesion molecule like- protein 1B; FNIII
domain, dscaml1 protein, structural genomics; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 122
Score = 123 bits (311), Expect = 9e-37
Identities = 46/121 (38%), Positives = 64/121 (52%), Gaps = 1/121 (0%)
Query: 41 PSDPLLVHTEAEPPTAEPSGLHAVAISSDSIRVTWSPPPAHLTNGDLLGYYLGYREQGFG 100
S + TE P P + ++S SI+VTW P L NG + GY +GYRE G
Sbjct: 2 SSGSSGISTEEAAPDGPPMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPG 61
Query: 101 RQNSYNFTTIPNRSDGAGVATLTGLRKYRKYDIVVQAFNEKGPGPMSSEVSVQTLEDVPA 160
Y+ + D + V TL L+K+ +Y +VVQAFN G GP SSE++ TLE P+
Sbjct: 62 SNGQYSIVEMKATGD-SEVYTLDNLKKFAQYGVVVQAFNRAGTGPSSSEINATTLESGPS 120
Query: 161 A 161
+
Sbjct: 121 S 121
Score = 83.2 bits (206), Expect = 5e-21
Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 144 GPMSSEVSVQTLEDVPAAPPLDITCSALSSTSLSVTWQPPPLLLQNGEILGYKVYY 199
G S + T E P PP+D+T ++S S+ VTW+ P LQNG I GY++ Y
Sbjct: 1 GS-SGSSGISTEEAAPDGPPMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGY 55
Score = 50.4 bits (121), Expect = 1e-08
Identities = 13/52 (25%), Positives = 21/52 (40%)
Query: 5 KSQNSGTEQWAVLQDLLPATLYRVRVLAENSLGAGRPSDPLLVHTEAEPPTA 56
+ + +G + L +L Y V V A N G G S + T P++
Sbjct: 70 EMKATGDSEVYTLDNLKKFAQYGVVVQAFNRAGTGPSSSEINATTLESGPSS 121
>1x5h_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 132
Score = 122 bits (309), Expect = 3e-36
Identities = 32/128 (25%), Positives = 52/128 (40%), Gaps = 5/128 (3%)
Query: 37 GAGRPSDPLLVHTEAEPPTAEPSGLHAVAISSDSIRVTWSPPPAHLTNGDLLGYYLGYRE 96
G+ S + V T ++ P+A P L +S SI + W PP NG + GY + YR+
Sbjct: 1 GSSGSSGDVAVRTLSDVPSAAPQNLSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRYRK 60
Query: 97 QGFGRQNSYNFTTIPNRSDGAGVATLTGLRKYRKYDIVVQAFNEKGPGPMSSEVSVQTLE 156
+ + S + GL + +Y+ V A G GP + +S +T E
Sbjct: 61 ASRKSDVTETLVSGTQLS-----QLIEGLDRGTEYNFRVAALTINGTGPATDWLSAETFE 115
Query: 157 DVPAAPPL 164
+
Sbjct: 116 SDLDETRV 123
Score = 90.5 bits (225), Expect = 1e-23
Identities = 25/58 (43%), Positives = 37/58 (63%)
Query: 142 GPGPMSSEVSVQTLEDVPAAPPLDITCSALSSTSLSVTWQPPPLLLQNGEILGYKVYY 199
G S +V+V+TL DVP+A P +++ +S S+ + WQPP QNG+I GYK+ Y
Sbjct: 1 GSSGSSGDVAVRTLSDVPSAAPQNLSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRY 58
Score = 49.3 bits (118), Expect = 4e-08
Identities = 14/50 (28%), Positives = 19/50 (38%)
Query: 9 SGTEQWAVLQDLLPATLYRVRVLAENSLGAGRPSDPLLVHTEAEPPTAEP 58
SGT+ +++ L T Y RV A G G +D L T
Sbjct: 73 SGTQLSQLIEGLDRGTEYNFRVAALTINGTGPATDWLSAETFESDLDETR 122
>2ibg_A CG9211-PA, GH03927P; IHOG, fibronectin type III, protein binding;
2.20A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1
PDB: 2ibb_A
Length = 214
Score = 123 bits (311), Expect = 1e-35
Identities = 34/154 (22%), Positives = 50/154 (32%), Gaps = 11/154 (7%)
Query: 6 SQNSGTEQWAVLQDLLPATLYRVRVLAENSLGAGRPSDP----LLVHTEAEPPTAEPSGL 61
+ G A + DL P YR R+LA S + S+ L A P P L
Sbjct: 63 NSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYLQPGAALDPMPVPELL 122
Query: 62 HAVAISSDSIRVTWSPPPAHLTNGDLLGYYLGYREQGF-GRQNSYNFTTIPNRSDGAGVA 120
S ++ + WS + GYY YR G RS
Sbjct: 123 EIEEYSETAVVLHWSLAS-DADEHLITGYYAYYRPSSSAGEYFKATIEGAHARS-----F 176
Query: 121 TLTGLRKYRKYDIVVQAFNEKGPGPMSSEVSVQT 154
+ L Y+ +Q+F+ S+ +T
Sbjct: 177 KIAPLETATMYEFKLQSFSAASASEFSALKQGRT 210
Score = 95.3 bits (237), Expect = 1e-24
Identities = 27/153 (17%), Positives = 48/153 (31%), Gaps = 14/153 (9%)
Query: 58 PSGLHAVAISSDSIRVTWSPPPAHLTNGDLLGYYLGYREQGFGRQNSYNFTTIPNRSDGA 117
P+ + +S +S+ + W P ++ + + YR G + IP
Sbjct: 5 PTPPNVTRLSDESVMLRWMVPRN--DGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPKW 62
Query: 118 GV-------ATLTGLRKYRKYDIVVQAFNEKGPGPMSSEVSVQTL----EDVPAAPPLDI 166
A++T L+ Y + A S+ + L P P +
Sbjct: 63 NSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYLQPGAALDPMPVPELL 122
Query: 167 TCSALSSTSLSVTWQPPPLLLQNGEILGYKVYY 199
S T++ + W I GY YY
Sbjct: 123 EIEEYSETAVVLHWSLAS-DADEHLITGYYAYY 154
Score = 41.7 bits (98), Expect = 4e-05
Identities = 8/51 (15%), Positives = 17/51 (33%), Gaps = 2/51 (3%)
Query: 1 DVEWKSQN--SGTEQWAVLQDLLPATLYRVRVLAENSLGAGRPSDPLLVHT 49
E+ + + L AT+Y ++ + ++ A S T
Sbjct: 160 AGEYFKATIEGAHARSFKIAPLETATMYEFKLQSFSAASASEFSALKQGRT 210
Score = 37.9 bits (88), Expect = 0.001
Identities = 11/39 (28%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Query: 161 APPLDITCSALSSTSLSVTWQPPPLLLQNGEILGYKVYY 199
PP + LS S+ + W P I+ +KV Y
Sbjct: 3 YPPTPPNVTRLSDESVMLRWMVPR--NDGLPIVIFKVQY 39
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain,
immunoglobulin superfamily, transmembrane,
phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A
{Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Length = 389
Score = 122 bits (308), Expect = 1e-33
Identities = 35/162 (21%), Positives = 56/162 (34%), Gaps = 16/162 (9%)
Query: 3 EWKS-QNSGTEQWAVLQDLLPATLYRVRVLAENSLGAGRPSDPLLVHT-EAEPPTAEPSG 60
WK ++ G + VL +L P T Y +RV A N G G S + T P+ P
Sbjct: 241 IWKIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQTLPVREPS--PPS 298
Query: 61 LHAVAISSDSIRVTWSPPPAHLTNGDLLGYYLGYREQGFGRQNSYNFTTIPNRSDGAGVA 120
+H S S +++ + +L Y + YR + Q
Sbjct: 299 IHGQPSSGKSFKLSITKQDDG--GAPILEYIVKYRSKDKEDQWLEKKVQGNKDH-----I 351
Query: 121 TLTGLRKYRKYDIVVQAFNEKGPGPMSSEVSVQTLEDVPAAP 162
L L+ Y++ + A N G + +P P
Sbjct: 352 ILEHLQWTMGYEVQITAANRLGYSEPT-----VYEFSMPPKP 388
Score = 103 bits (259), Expect = 1e-26
Identities = 38/170 (22%), Positives = 60/170 (35%), Gaps = 14/170 (8%)
Query: 30 VLAENSLGAGRPSDPLLVHTEAEPPTAEPSGLHAVAISSDSIRVTWSPPPAHLTNGDLLG 89
A N +G L + A+ P++ P G+ + +S + +V+++ P +H +
Sbjct: 175 CTATNHIGTRFQEYILAL---ADVPSS-PYGVKIIELSQTTAKVSFNKPDSH-GGVPIHH 229
Query: 90 YYLGYREQGFGRQNSYNFTTIPNRSDGAGVATLTGLRKYRKYDIVVQAFNEKGPGPMSSE 149
Y + +E + L L Y+I V A N KG G S
Sbjct: 230 YQVDVKEVASEIWKIVR-SHGVQTM-----VVLNNLEPNTTYEIRVAAVNGKGQGDYSKI 283
Query: 150 VSVQTLEDVPAAPPLDITCSALSSTSLSVTWQPPPLLLQNGEILGYKVYY 199
QTL +PP I S S ++ IL Y V Y
Sbjct: 284 EIFQTLPVREPSPP-SIHGQPSSGKSFKLSITKQD--DGGAPILEYIVKY 330
>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY
acidic protein fold, fibronectin type III fold, hormone-
growth factor complex; NMR {Homo sapiens}
Length = 680
Score = 125 bits (314), Expect = 2e-33
Identities = 31/191 (16%), Positives = 62/191 (32%), Gaps = 11/191 (5%)
Query: 3 EWKSQNSGTEQWAVLQDLLPATLYRVRVLAENSLGAGRPSDPLLVHTEAEPPTAEP---- 58
W++ T++ L D+ P+ Y+ RV A N G + P ++ P+A P
Sbjct: 213 HWQTVAQTTDERVQLTDIRPSRWYQFRVAAVNVHGTRGFTAPSKHFRSSKDPSAPPAPAN 272
Query: 59 ---SGLHAVAISSDSIRVTWSPPPAHLTNGDLLGYYLGYREQGFGRQNSYNFTTIPNRSD 115
+ + S ++ + W P + + Y + + + +D
Sbjct: 273 LRLANSTVNSDGSVTVTIVWDLPEEP--DIPVHHYKVFWSWMVSSKSLVPTKKKRRKTTD 330
Query: 116 GAG-VATLTGLRKYRKYDIVVQAFNEKGPGPMSSE-VSVQTLEDVPAAPPLDITCSALSS 173
G L L+ Y + +QA G + S VS+ + +
Sbjct: 331 GFQNSVILEKLQPDCDYVVELQAITYWGQTRLKSAKVSLHFTSTHATNNKEQLVKTRKGG 390
Query: 174 TSLSVTWQPPP 184
+ +Q
Sbjct: 391 IQTQLPFQRRR 401
Score = 104 bits (259), Expect = 4e-26
Identities = 32/174 (18%), Positives = 60/174 (34%), Gaps = 17/174 (9%)
Query: 37 GAGRPSDPLLVHTEAEPPTAEPSGLHAVAISSDSIRVTWSPPPAHLTNGDLLGYYLGYRE 96
G G + P L + S + V WS + + + Y + R
Sbjct: 144 GCGHTCQVPKTLYKGVPLKP-RKELRFTELQSGQLEVKWSSKFNI--SIEPVIYVVQRRW 200
Query: 97 ---QGFGRQNSYNFTTIPNRSDGAGVATLTGLRKYRKYDIVVQAFNEKGPGPMSSEVSVQ 153
++ ++ T+ +D LT +R R Y V A N G ++
Sbjct: 201 NYGIHPSEDDATHWQTVAQTTDER--VQLTDIRPSRWYQFRVAAVNVHGTRGFTAPSKHF 258
Query: 154 TLEDVPAAPP-------LDITCSALSSTSLSVTWQPPPLLLQNGEILGYKVYYE 200
P+APP + T ++ S ++++ W P + + YKV++
Sbjct: 259 RSSKDPSAPPAPANLRLANSTVNSDGSVTVTIVWDLPE--EPDIPVHHYKVFWS 310
Score = 94.6 bits (234), Expect = 7e-23
Identities = 35/211 (16%), Positives = 65/211 (30%), Gaps = 37/211 (17%)
Query: 3 EWKSQNSGTEQWAVLQDLLPATLYRVRVLAENSLGAGRPSDPLLVHTEAEPPT------- 55
S E + +LQDL + Y+V V +
Sbjct: 452 SEASSGMTHENYIILQDLSFSCKYKVTVQPIRPKSHSKAEAVFFTTPPCSALKGKSHKPI 511
Query: 56 --------------AEPSGLHAVAI---SSDSIRVTWSPPPAHLTNGDLLGYYLGYREQG 98
A+P L A I + + +W A+L + G+ + + E
Sbjct: 512 GCLGEAGHVLSKVLAKPENLSASFIVQDVNITGHFSWKMAKANL-YQPMTGFQVTWAEVT 570
Query: 99 FGRQNSYNFTTIPNRSDGAGV----ATLTGLRKYRKYDIVVQAFNEKGPGPMSSEVSVQT 154
+ + +I ++S T+ LR Y + VQ G GP ++ + +T
Sbjct: 571 TESRQNSLPNSIISQSQILPSDHYVLTVPNLRPSTLYRLEVQVLTPGGEGP-ATIKTFRT 629
Query: 155 LEDVPAAP-PLDITCSALSSTSLSVTWQPPP 184
E P++ + ++P P
Sbjct: 630 PELPPSSAHRSHLKHRHPHH------YKPSP 654
Score = 87.7 bits (216), Expect = 2e-20
Identities = 29/243 (11%), Positives = 59/243 (24%), Gaps = 58/243 (23%)
Query: 9 SGTEQWAVLQDLLPATLYRVRVLAENSLGAGRP-SDPLLVHTEAEPPTAEPSGLHAVAIS 67
G + +L+ L P Y V + A G R S + +H + T L
Sbjct: 330 DGFQNSVILEKLQPDCDYVVELQAITYWGQTRLKSAKVSLHFTSTHATNNKEQLVKTRKG 389
Query: 68 SD---------------------------SIRVTWSPPPAHLTNGDLLGYYLGYREQGFG 100
++V W + + Y++ + +
Sbjct: 390 GIQTQLPFQRRRPTRPLEVGAPFYQDGQLQVKVYWKKTE----DPTVNRYHVRWFPEACA 445
Query: 101 RQNSYNFTTIPNRSDGAGVATLTGLRKYRKYDIVVQAFNEKGPGPMSSEVSVQTLEDVPA 160
+ + L L KY + VQ K +
Sbjct: 446 HNRTTGSEASSGMTHEN-YIILQDLSFSCKYKVTVQPIRPKSHSKAEAVFFTTPPCSALK 504
Query: 161 ---------------------APPLDITCS---ALSSTSLSVTWQPPPLLLQNGEILGYK 196
A P +++ S + + +W+ + G++
Sbjct: 505 GKSHKPIGCLGEAGHVLSKVLAKPENLSASFIVQDVNITGHFSWKMAKAN-LYQPMTGFQ 563
Query: 197 VYY 199
V +
Sbjct: 564 VTW 566
>3lpw_A A77-A78 domain from titin; intracellular FNIII-tandem, structural
protein; 1.65A {Homo sapiens}
Length = 197
Score = 117 bits (294), Expect = 3e-33
Identities = 36/156 (23%), Positives = 61/156 (39%), Gaps = 10/156 (6%)
Query: 3 EWKSQN-SGTEQWAVLQDLLPATLYRVRVLAENSLGAGRPSDPLLVHTEAEPPTAEPSGL 61
+ + + + + L Y RVLAEN G G P++ +E P P +
Sbjct: 51 AYSTVATNCHKTSWKVDQLQEGCSYYFRVLAENEYGIGLPAETAESVKASERPLP-PGKI 109
Query: 62 HAVAISSDSIRVTWSPPPAHLTNGDLLGYYLGYREQGFGRQNSYNFTTIPNRSDGAGVAT 121
+ ++ +S+ ++W P H +LGY + + +G T+ AT
Sbjct: 110 TLMDVTRNSVSLSWE-KPEHDGGSRILGYIVEMQTKGSD--KWATCATVKVTE-----AT 161
Query: 122 LTGLRKYRKYDIVVQAFNEKGPGPMSSEVSVQTLED 157
+TGL + +Y V A NEKG +D
Sbjct: 162 ITGLIQGEEYSFRVSAQNEKGISDPRQLSVPVIAKD 197
Score = 101 bits (253), Expect = 4e-27
Identities = 36/149 (24%), Positives = 56/149 (37%), Gaps = 12/149 (8%)
Query: 52 EPPTAEPSGLHAVAISSDSIRVTWSPPPAHLTNG-DLLGYYLGYREQGFGRQNSYNFTTI 110
+ P P L ++ S+ +TW PP G + Y + RE ++ T
Sbjct: 4 DTPGP-PQDLKVKEVTKTSVTLTWDPPLL--DGGSKIKNYIVEKRESTRKAYSTVA-TNC 59
Query: 111 PNRSDGAGVATLTGLRKYRKYDIVVQAFNEKGPGPMSSEVSVQTLEDVPAAPPLDITCSA 170
S + L++ Y V A NE G G + + P PP IT
Sbjct: 60 HKTS-----WKVDQLQEGCSYYFRVLAENEYGIGLPAETAESVKASERP-LPPGKITLMD 113
Query: 171 LSSTSLSVTWQPPPLLLQNGEILGYKVYY 199
++ S+S++W+ P ILGY V
Sbjct: 114 VTRNSVSLSWEKPE-HDGGSRILGYIVEM 141
>2ee2_A Contactin-1; neural cell surface protein F3, glycoprotein GP135,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 119
Score = 111 bits (280), Expect = 5e-32
Identities = 24/123 (19%), Positives = 41/123 (33%), Gaps = 8/123 (6%)
Query: 37 GAGRPSDPLLVHTEAEPPTAEPSGLHAVAISSDSIRVTWSPPPAHLTNGDLLGYYLGYRE 96
G+ S ++++ + P+ P+ + +SS I V W + Y + Y
Sbjct: 1 GSSGSSGVAVINSAQDAPSEAPTEVGVKVLSSSEISVHWEHVL----EKIVESYQIRYWA 56
Query: 97 QGFGRQNSYNFTTIPNRSDGAGVATLTGLRKYRKYDIVVQAFNEKGPGPMSSEVSVQTLE 156
+ + A L L +Y I V A N G GP S + T +
Sbjct: 57 AHDKEEAANRVQVTSQEY----SARLENLLPDTQYFIEVGACNSAGCGPPSDMIEAFTKK 112
Query: 157 DVP 159
Sbjct: 113 ASG 115
Score = 82.8 bits (205), Expect = 6e-21
Identities = 13/58 (22%), Positives = 25/58 (43%), Gaps = 4/58 (6%)
Query: 142 GPGPMSSEVSVQTLEDVPAAPPLDITCSALSSTSLSVTWQPPPLLLQNGEILGYKVYY 199
G S + + +D P+ P ++ LSS+ +SV W+ + Y++ Y
Sbjct: 1 GSSGSSGVAVINSAQDAPSEAPTEVGVKVLSSSEISVHWEHVL----EKIVESYQIRY 54
Score = 52.0 bits (125), Expect = 3e-09
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 1 DVEWKSQNSGTEQWAVLQDLLPATLYRVRVLAENSLGAGRPSDPLLVHT-EAEPPTA 56
+ + Q + E A L++LLP T Y + V A NS G G PSD + T +A P++
Sbjct: 62 EAANRVQVTSQEYSARLENLLPDTQYFIEVGACNSAGCGPPSDMIEAFTKKASGPSS 118
>1x5g_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 116
Score = 110 bits (278), Expect = 9e-32
Identities = 40/127 (31%), Positives = 59/127 (46%), Gaps = 13/127 (10%)
Query: 37 GAGRPSDPLLVHTEAEPPTAEPSGLHAVAISSDSIRVTWSPPPAHLTNGDLLGYYLGYRE 96
G+ S + E + P L A A S SI VTW P + NG++ Y L Y E
Sbjct: 1 GSSGSSGRVETQPEVQLPGP-APNLRAYAASPTSITVTWETPVSG--NGEIQNYKLYYME 57
Query: 97 QGFGRQNSYNFTTIPNRSDGAGVATLTGLRKYRKYDIVVQAFNEKGPGPMSSEVSVQTLE 156
+G + + + S T+ GL+KY +Y V A+N+ GPG + +V+V+TL
Sbjct: 58 KG---TDKEQDVDVSSHS-----YTINGLKKYTEYSFRVVAYNKHGPGVSTPDVAVRTLS 109
Query: 157 DVPAAPP 163
D P
Sbjct: 110 DSG--PS 114
Score = 72.8 bits (179), Expect = 4e-17
Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 142 GPGPMSSEVSVQTLEDVPAAPPLDITCSALSSTSLSVTWQPPPLLLQNGEILGYKVYY 199
G S V Q +P P ++ A S TS++VTW+ P NGEI YK+YY
Sbjct: 1 GSSGSSGRVETQPEVQLPGPAP-NLRAYAASPTSITVTWETPV--SGNGEIQNYKLYY 55
Score = 50.0 bits (120), Expect = 1e-08
Identities = 15/66 (22%), Positives = 25/66 (37%), Gaps = 9/66 (13%)
Query: 2 VEWKSQNSGTEQW-------AVLQDLLPATLYRVRVLAENSLGAGRPSDPLLVHTEAEPP 54
+ + + + EQ + L T Y RV+A N G G + + V T ++
Sbjct: 53 LYYMEKGTDKEQDVDVSSHSYTINGLKKYTEYSFRVVAYNKHGPGVSTPDVAVRTLSDSG 112
Query: 55 TAEPSG 60
SG
Sbjct: 113 --PSSG 116
>2gee_A Hypothetical protein; fibronectin, EIIIB, cancer,
neovascularization, cell adhesion, protein binding,
oncoprotein; 2.01A {Homo sapiens} PDB: 2fnb_A
Length = 203
Score = 112 bits (283), Expect = 1e-31
Identities = 38/167 (22%), Positives = 62/167 (37%), Gaps = 19/167 (11%)
Query: 34 NSLGAGRPSDPLLVHTEAEPPTAEPSGLHAVAISSDSIRVTWSPPPAHLTNGDLLGYYLG 93
+S S L+ P+ L V I+ SI + W+P + ++GY +
Sbjct: 3 SSHHHHHHSSGLVPRGSHMEVPQ-PTDLSFVDITDSSIGLRWTPLN----SSTIIGYRIT 57
Query: 94 YREQGFGRQNSYNFTTIPNRSDGAGVATLTGLRKYRKYDIVVQAFNEKGPGPMSSEVSVQ 153
G G +F T+TGL YDI V G + ++ Q
Sbjct: 58 VVAAGEGIPIFEDFVDSSVGY-----YTVTGLEPGIDYDISVYTVKNGGEST-PTTLTQQ 111
Query: 154 TLEDVPAAPPLDITCSALSSTSLSVTWQPPPLLLQNGEILGYKVYYE 200
T PP D+ + + ++ VTW PPP + ++ + V Y
Sbjct: 112 T----AVPPPTDLRFTNIGPDTMRVTWAPPP----SIDLTNFLVRYS 150
Score = 96.0 bits (239), Expect = 4e-25
Identities = 28/146 (19%), Positives = 51/146 (34%), Gaps = 15/146 (10%)
Query: 9 SGTEQWAVLQDLLPATLYRVRVLAENSLGAGRPSDPLLVHTEAEPPTAEPSGLHAVAISS 68
+ + + L P Y + V + G P+ T+ P+ L I
Sbjct: 73 DSSVGYYTVTGLEPGIDYDISVYTVKNGGESTPTTL----TQQTAVPP-PTDLRFTNIGP 127
Query: 69 DSIRVTWSPPPAHLTNGDLLGYYLGYREQGFGRQNSYNFTTIPNRSDGAGVATLTGLRKY 128
D++RVTW+PPP + DL + + Y + + + + LT L
Sbjct: 128 DTMRVTWAPPP----SIDLTNFLVRYSPVKNEEDVAELSISPSDNA-----VVLTNLLPG 178
Query: 129 RKYDIVVQAFNEKGPGPMSSEVSVQT 154
+Y + V + E+ +T
Sbjct: 179 TEYVVSVSSVYEQHEST-PLRGRQKT 203
>2dlh_A Receptor-type tyrosine-protein phosphatase delta; protein-tyrosine
phosphatase delta, R-PTP-delta, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 121
Score = 109 bits (275), Expect = 2e-31
Identities = 33/123 (26%), Positives = 54/123 (43%), Gaps = 6/123 (4%)
Query: 37 GAGRPSDPLLVHTEAEPPTAEPSGLHAVAISSDSIRVTWSPPPAHLTNGDLLGYYLGYRE 96
G+ S P+L T + P++ P + A +SS +I V W P NG + GY + Y
Sbjct: 1 GSSGSSGPVLTQTSEQAPSSAPRDVQARMLSSTTILVQWKEPEEP--NGQIQGYRVYYTM 58
Query: 97 QGFGRQNSYNFTTIPNRSDGAGVATLTGLRKYRKYDIVVQAFNEKGPGPMSSEVSVQTLE 156
N++ + + + T+ L + Y + V AF G GP+SS++ V T
Sbjct: 59 DPTQHVNNWMKHNVADSQ----ITTIGNLVPQKTYSVKVLAFTSIGDGPLSSDIQVITQT 114
Query: 157 DVP 159
Sbjct: 115 GSG 117
Score = 82.8 bits (205), Expect = 7e-21
Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 142 GPGPMSSEVSVQTLEDVPAAPPLDITCSALSSTSLSVTWQPPPLLLQNGEILGYKVYYEN 201
G S V QT E P++ P D+ LSST++ V W+ P NG+I GY+VYY
Sbjct: 1 GSSGSSGPVLTQTSEQAPSSAPRDVQARMLSSTTILVQWKEPE--EPNGQIQGYRVYYTM 58
Query: 202 MRELP 206
Sbjct: 59 DPTQH 63
Score = 54.7 bits (132), Expect = 4e-10
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 1 DVEWKSQNSGTEQWAVLQDLLPATLYRVRVLAENSLGAGRPSDPLLVHT-EAEPPTA 56
W N Q + +L+P Y V+VLA S+G G S + V T P++
Sbjct: 64 VNNWMKHNVADSQITTIGNLVPQKTYSVKVLAFTSIGDGPLSSDIQVITQTGSGPSS 120
>1uen_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold,
fibronectin type III, NG-CAM related cell adhesion
molecule, structural genomics; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 125
Score = 109 bits (273), Expect = 5e-31
Identities = 28/124 (22%), Positives = 42/124 (33%), Gaps = 4/124 (3%)
Query: 42 SDPLLVHTEAEPPTAEPSGLHAVAISSDSIRVTWSPPPAHLTNGDLLGYYLGYREQGFGR 101
S H+ + P P + ++S V W P P G L GY + Y +
Sbjct: 2 SSGSSGHSGEDLPMVAPGNVRVNVVNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQSSS 61
Query: 102 QNSYNFTTIPNRSDGAGV--ATLTGLRKYRKYDIVVQAFNEKGPGPMSSEVSVQTLEDVP 159
+ + + L GL + Y + V+ N KG GP S + T E
Sbjct: 62 KRNRRHIEKKILTFQGSKTHGMLPGLEPFSHYTLNVRVVNGKGEGPASPDRVFNTPEGSG 121
Query: 160 AAPP 163
P
Sbjct: 122 --PS 123
Score = 81.3 bits (201), Expect = 3e-20
Identities = 19/58 (32%), Positives = 30/58 (51%)
Query: 147 SSEVSVQTLEDVPAAPPLDITCSALSSTSLSVTWQPPPLLLQNGEILGYKVYYENMRE 204
SS S + ED+P P ++ + ++ST V W P PL G + GY++YY +
Sbjct: 2 SSGSSGHSGEDLPMVAPGNVRVNVVNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQS 59
Score = 50.1 bits (120), Expect = 2e-08
Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 9 SGTEQWAVLQDLLPATLYRVRVLAENSLGAGRPSDPLLVHT-EAEPPTA 56
G++ +L L P + Y + V N G G S + +T E P++
Sbjct: 76 QGSKTHGMLPGLEPFSHYTLNVRVVNGKGEGPASPDRVFNTPEGSGPSS 124
>1x5z_A Receptor-type tyrosine-protein phosphatase delta; fibronectin type
III domain containing protein, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 115
Score = 107 bits (269), Expect = 2e-30
Identities = 30/123 (24%), Positives = 51/123 (41%), Gaps = 12/123 (9%)
Query: 37 GAGRPSDPLLVHTEAEPPTAEPSGLHAVAISSDSIRVTWSPPPAHLTNGDLLGYYLGYRE 96
G+ S + V T+ P P A S SI ++W+PP + + Y L Y++
Sbjct: 1 GSSGSSGDIQVITQTGVPGQ-PLNFKAEPESETSILLSWTPPR----SDTIANYELVYKD 55
Query: 97 QGFGRQNSYNFTTIPNRSDGAGVATLTGLRKYRKYDIVVQAFNEKGPGPMSSEVSVQTLE 156
G + T P S L GL+ Y + A + +G G ++E+S +T++
Sbjct: 56 GEHGEEQ--RITIEPGTS-----YRLQGLKPNSLYYFRLAARSPQGLGASTAEISARTMQ 108
Query: 157 DVP 159
Sbjct: 109 SSG 111
Score = 72.4 bits (178), Expect = 6e-17
Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 5/58 (8%)
Query: 142 GPGPMSSEVSVQTLEDVPAAPPLDITCSALSSTSLSVTWQPPPLLLQNGEILGYKVYY 199
G S ++ V T VP P + S TS+ ++W PP + I Y++ Y
Sbjct: 1 GSSGSSGDIQVITQTGVPGQPL-NFKAEPESETSILLSWTPPR----SDTIANYELVY 53
Score = 51.2 bits (123), Expect = 5e-09
Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Query: 3 EWKSQNSGTEQWAVLQDLLPATLYRVRVLAENSLGAGRPSDPLLVHT-EAEPPTA 56
E + LQ L P +LY R+ A + G G + + T ++ P++
Sbjct: 60 EEQRITIEPGTSYRLQGLKPNSLYYFRLAARSPQGLGASTAEISARTMQSSGPSS 114
>1x4y_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes
(CDON)binding...; fibronectin type III, FN3; NMR {Mus
musculus} SCOP: b.1.2.1
Length = 114
Score = 106 bits (267), Expect = 3e-30
Identities = 26/115 (22%), Positives = 47/115 (40%), Gaps = 4/115 (3%)
Query: 48 HTEAEPPTAEPSGLHAVAISSDSIRVTWSPPPAHLTNGDLLGYYLGYREQGFGRQNSYNF 107
+ + P A P A++ +I + W PA N + G+Y+ YR + Y
Sbjct: 2 SSGSSGPVAGPYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKK 61
Query: 108 TTIPNRSDGAGVATLTGLRKYRKYDIVVQAFNEKGPGPMSSEVSVQTLE-DVPAA 161
+ +++ L+ YDI +Q FNE G S+ + +T P++
Sbjct: 62 DMVEGDR---YWHSISHLQPETSYDIKMQCFNEGGESEFSNVMICETKARSGPSS 113
Score = 69.4 bits (170), Expect = 9e-16
Identities = 12/46 (26%), Positives = 20/46 (43%)
Query: 154 TLEDVPAAPPLDITCSALSSTSLSVTWQPPPLLLQNGEILGYKVYY 199
+ P A P A++ T++ + W P N I G+ +YY
Sbjct: 3 SGSSGPVAGPYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYY 48
Score = 47.9 bits (114), Expect = 1e-07
Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Query: 1 DVEWKSQN-SGTEQWAVLQDLLPATLYRVRVLAENSLGAGRPSDPLLVHTEAEPPTA 56
D ++K G W + L P T Y +++ N G S+ ++ T+A +
Sbjct: 56 DSDYKKDMVEGDRYWHSISHLQPETSYDIKMQCFNEGGESEFSNVMICETKARSGPS 112
>2dbj_A Proto-oncogene tyrosine-protein kinase MER precursor; C-MER,
receptor tyrosine kinase mertk, FN3 domain, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 124
Score = 105 bits (263), Expect = 2e-29
Identities = 27/124 (21%), Positives = 45/124 (36%), Gaps = 5/124 (4%)
Query: 37 GAGRPSDPLLVHTEAEPPTAEPSGLHA-VAISSDSIRVTWSPPPAHLTNGDLLGYYLGYR 95
G+ S +L T P+ P + + SSD++ + W PP +G+L+GY + +
Sbjct: 1 GSSGSSGWILASTTEGAPSVAPLNVTVFLNESSDNVDIRWMKPPTKQQDGELVGYRISHV 60
Query: 96 EQGFGRQNSYNFTTIPNRSDGAGVATLTGLRKYRKYDIVVQAFNEKGPGPMSSEVSVQTL 155
Q G N S A ++ + + A G GP S V +
Sbjct: 61 WQSAGISKELLEEVGQNGSR----ARISVQVHNATCTVRIAAVTRGGVGPFSDPVKIFIP 116
Query: 156 EDVP 159
Sbjct: 117 AHSG 120
Score = 78.7 bits (194), Expect = 4e-19
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 142 GPGPMSSEVSVQTLEDVPAAPPLDITCSA-LSSTSLSVTWQPPPLLLQNGEILGYKVYY 199
G S + T E P+ PL++T SS ++ + W PP Q+GE++GY++ +
Sbjct: 1 GSSGSSGWILASTTEGAPSVAPLNVTVFLNESSDNVDIRWMKPPTKQQDGELVGYRISH 59
Score = 50.6 bits (121), Expect = 1e-08
Identities = 13/57 (22%), Positives = 20/57 (35%), Gaps = 3/57 (5%)
Query: 3 EWKSQNSGTEQWAVLQDLLPATLYRVRVLAENSLGAGRPSDPLLVHTEAEPPTAEPS 59
E + A + + VR+ A G G SDP+ + P + PS
Sbjct: 69 ELLEEVGQNGSRARISVQVHNATCTVRIAAVTRGGVGPFSDPVKIFI---PAHSGPS 122
>2vkw_A Neural cell adhesion molecule 1,140 kDa isoform; adhesion receptor;
2.3A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 2vkx_A
1lwr_A
Length = 209
Score = 107 bits (269), Expect = 2e-29
Identities = 30/157 (19%), Positives = 50/157 (31%), Gaps = 13/157 (8%)
Query: 7 QNSGTEQWAVLQDLLPATLYRVRVLAENSLGAGRPSDPLLVHTEAEPPTAEPSGLHAVAI 66
+ + E + L P T Y VR+ A N G G S T+ + P +
Sbjct: 62 KEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQPVREPSAPKLEGQMGE 121
Query: 67 SSDSIRVTWSPPPAHLTNGDLLGYYLGYREQGFGRQNSYNFTTIPNRSDGAGVATLTGLR 126
+SI+V + Y + YR + L L
Sbjct: 122 DGNSIKVNLIKQDDG--GSPIRHYLVRYRALS-SEWKPEIRLPSGSDH-----VMLKSLD 173
Query: 127 KYRKYDIVVQAFNEKGPGPMSSEVSVQTLEDVPAAPP 163
+Y++ V A N++G ++ +T AA
Sbjct: 174 WNAEYEVYVVAENQQGKSK-AAHFVFRT----AAAHH 205
Score = 99.5 bits (248), Expect = 3e-26
Identities = 35/152 (23%), Positives = 57/152 (37%), Gaps = 9/152 (5%)
Query: 49 TEAEPPTAEPSGLHAVAISSDSIRVTWSPPPAHLTNG-DLLGYYLGYREQGFGRQNSYNF 107
+A+ P++ PS + V S + +V + P A T G +L Y +R G +S +
Sbjct: 4 AQADTPSS-PS-IDQVEPYSSTAQVQFDEPEA--TGGVPILKYKAEWRAVGEEVWHSKWY 59
Query: 108 TTIPNRSDGAGVATLTGLRKYRKYDIVVQAFNEKGPGPMSSEVSVQTLEDVPAAPPLDIT 167
+G T+ GL+ Y + + A N KG G +S+ +T + P
Sbjct: 60 DAKEASMEGI--VTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQPVREPSAPKLEG 117
Query: 168 CSALSSTSLSVTWQPPPLLLQNGEILGYKVYY 199
S+ V I Y V Y
Sbjct: 118 QMGEDGNSIKVNLIKQD--DGGSPIRHYLVRY 147
Score = 45.2 bits (107), Expect = 3e-06
Identities = 13/54 (24%), Positives = 20/54 (37%), Gaps = 2/54 (3%)
Query: 3 EWKSQN--SGTEQWAVLQDLLPATLYRVRVLAENSLGAGRPSDPLLVHTEAEPP 54
EWK + +L+ L Y V V+AEN G + + + A
Sbjct: 153 EWKPEIRLPSGSDHVMLKSLDWNAEYEVYVVAENQQGKSKAAHFVFRTAAAHHH 206
>2edy_A Receptor-type tyrosine-protein phosphatase F; LAR protein,
leukocyte antigen related, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 103
Score = 103 bits (259), Expect = 4e-29
Identities = 31/107 (28%), Positives = 52/107 (48%), Gaps = 8/107 (7%)
Query: 49 TEAEPPTAEPSGLHAVAISSDSIRVTWSPPPAHLTNGDLLGYYLGYREQGFGRQNSYNFT 108
+ + P+ P LH +++ + + W PP NG ++ Y + +R+ +Q N T
Sbjct: 3 SGSSGPSGFPQNLHVTGLTTSTTELAWDPPVLAERNGRIISYTVVFRDIN-SQQELQNIT 61
Query: 109 TIPNRSDGAGVATLTGLRKYRKYDIVVQAFNEKGPGPMSSEVSVQTL 155
T TLTGL+ YDI V+A+ KG GP+S + +T+
Sbjct: 62 TDTR-------FTLTGLKPDTTYDIKVRAWTSKGSGPLSPSIQSRTM 101
Score = 76.2 bits (188), Expect = 2e-18
Identities = 12/46 (26%), Positives = 25/46 (54%)
Query: 154 TLEDVPAAPPLDITCSALSSTSLSVTWQPPPLLLQNGEILGYKVYY 199
+ P+ P ++ + L++++ + W PP L +NG I+ Y V +
Sbjct: 3 SGSSGPSGFPQNLHVTGLTTSTTELAWDPPVLAERNGRIISYTVVF 48
Score = 49.2 bits (118), Expect = 3e-08
Identities = 15/49 (30%), Positives = 23/49 (46%)
Query: 1 DVEWKSQNSGTEQWAVLQDLLPATLYRVRVLAENSLGAGRPSDPLLVHT 49
+ + + QN T+ L L P T Y ++V A S G+G S + T
Sbjct: 52 NSQQELQNITTDTRFTLTGLKPDTTYDIKVRAWTSKGSGPLSPSIQSRT 100
>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone
receptor/immune system complex; 3.80A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1
PDB: 3loh_E
Length = 897
Score = 112 bits (280), Expect = 6e-29
Identities = 32/189 (16%), Positives = 59/189 (31%), Gaps = 21/189 (11%)
Query: 1 DVEWKSQNSGTEQWAVLQDLLPATLYRVRVLAENSLG-----AGRPSDPLLVHTEAEPPT 55
+ S +++ L P T Y + V + G SD + V T+A P+
Sbjct: 537 PLRSNDPKSQNHPGWLMRGLKPWTQYAIFVKTLVTFSDERRTYGAKSDIIYVQTDATNPS 596
Query: 56 AEPSGLHAVAISSDSIRVTWSPPPAHLTNGDLLGYYLGYREQGFGRQNSYNFTTIPNRSD 115
P +V+ SS I + W PP NG++ Y + + Q + +
Sbjct: 597 V-PLDPISVSNSSSQIILKWKPP--SDPNGNITHYLVFWERQAEDSELFELDYCLKGL-- 651
Query: 116 GAGVATLTGLRKYRKYDIVVQAFNEKGPGPMSSEVSVQTLEDVPAAPPLDITCSALSSTS 175
R + ++ + + E S P + L +S
Sbjct: 652 ---------KLPSRTWSPPFESEDSQKHNQSEYEDSAGECCSCPKTDSQILK--ELEESS 700
Query: 176 LSVTWQPPP 184
T++
Sbjct: 701 FRKTFEDYL 709
Score = 111 bits (279), Expect = 9e-29
Identities = 40/214 (18%), Positives = 72/214 (33%), Gaps = 19/214 (8%)
Query: 2 VEWKSQNSGTEQWAVLQ----DLLPATLYRVRVLAENSLGAGRPSDPLLVHTEAEPPTAE 57
V W+ Q +E + + LP+ + +E+S + P +
Sbjct: 630 VFWERQAEDSELFELDYCLKGLKLPSRTWSPPFESEDSQKHNQSEYEDSAGECCSCPKTD 689
Query: 58 PSGLHAVAISSDSIRVTWSPPPAHLTNGDL---LGYYLGYREQGFGRQNSYNFTTIPNRS 114
L + SS R T+ ++ LG + F + N+
Sbjct: 690 SQILKELEESS--FRKTFEDYLHNVVFVPRPSRKRRSLGDVGNAGNNEEHRPFEKVVNKE 747
Query: 115 DGAGVATLTGLRKYRKYDIVVQAFNEKGPGPMSSEVSVQTLEDVPAAP----PLDITCSA 170
++GLR + Y I +QA N+ P S + + +P A +T
Sbjct: 748 ----SLVISGLRHFTGYRIELQACNQDTPEERCSVAAYVSARTMPEAKADDIVGPVTHEI 803
Query: 171 LSSTSLSVTWQPPPLLLQNGEILGYKVYYENMRE 204
+ + + WQ P NG I+ Y+V Y +
Sbjct: 804 FENNVVHLMWQEPK--EPNGLIVLYEVSYRRYGD 835
Score = 109 bits (273), Expect = 5e-28
Identities = 25/160 (15%), Positives = 48/160 (30%), Gaps = 12/160 (7%)
Query: 7 QNSGTEQWAVLQDLLPATLYRVRVLAENSLGAGRPSDPLLVHTE----AEPPTAEPSGLH 62
+ ++ V+ L T YR+ + A N + +
Sbjct: 741 EKVVNKESLVISGLRHFTGYRIELQACNQDTPEERCSVAAYVSARTMPEAKADDIVGPVT 800
Query: 63 AVAISSDSIRVTWSPPPAHLTNGDLLGYYLGYREQGFGRQNSYNFTTIPNRSDGAGVATL 122
++ + + W P NG ++ Y + YR G + L
Sbjct: 801 HEIFENNVVHLMWQEPKE--PNGLIVLYEVSYRRYG---DEELHLCDTRKHFALERGCRL 855
Query: 123 TGLRKYRKYDIVVQAFNEKGPGPMSSEVSVQTLE--DVPA 160
GL Y + ++A + G G + + DVP+
Sbjct: 856 RGLSPGN-YSVRIRATSLAGNGSWTEPTYFYVTDYLDVPS 894
Score = 100 bits (249), Expect = 1e-24
Identities = 45/208 (21%), Positives = 74/208 (35%), Gaps = 27/208 (12%)
Query: 20 LLPATLYRVRVLAENSLGAGRPSDPLLVHTEAEPPTAEPSGLHAVAISSDSIRVTWSPPP 79
L + ++++ ++ R L + + E + S D I + W P
Sbjct: 434 LCLSEIHKMEEVSGTKGRQERNDIALKTNGDQASCENELLKFSYIRTSFDKILLRWEPYW 493
Query: 80 AHLTNGDLLGYYLGYREQGFGRQ-----------NSYNFTTIPNRSDGAGV-------AT 121
DLLG+ L Y+E + NS+ I
Sbjct: 494 PP-DFRDLLGFMLFYKEAPYQNVTEFDGQDACGSNSWTVVDIDPPLRSNDPKSQNHPGWL 552
Query: 122 LTGLRKYRKYDIVVQAFNEKG-----PGPMSSEVSVQTLEDVPAAPPLDITCSALSSTSL 176
+ GL+ + +Y I V+ G S + VQT P+ PLD + SS+ +
Sbjct: 553 MRGLKPWTQYAIFVKTLVTFSDERRTYGAKSDIIYVQTDATNPS-VPLDPISVSNSSSQI 611
Query: 177 SVTWQPPPLLLQNGEILGYKVYYENMRE 204
+ W+PP NG I Y V++E E
Sbjct: 612 ILKWKPP--SDPNGNITHYLVFWERQAE 637
Score = 36.4 bits (83), Expect = 0.005
Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 3/57 (5%)
Query: 5 KSQNSGTEQWAVLQDLLPATLYRVRVLAENSLGAGRPSDPLLVHTEAEPPTAEPSGL 61
++ E+ L+ L P Y VR+ A + G G ++P + PS +
Sbjct: 843 TRKHFALERGCRLRGLSPGN-YSVRIRATSLAGNGSWTEPTYFYVTDYLDV--PSNI 896
>3n1f_C Cell adhesion molecule-related/DOWN-regulated BY; binding sites,
calcium, cell adhesion molecules, cell cycle cell LINE,
conserved sequence; 1.60A {Homo sapiens} PDB: 3d1m_C
3n1q_C 3n1m_C 3n1g_C 3n1p_C
Length = 102
Score = 101 bits (254), Expect = 2e-28
Identities = 24/104 (23%), Positives = 40/104 (38%), Gaps = 3/104 (2%)
Query: 51 AEPPTAEPSGLHAVAISSDSIRVTWSPPPAHLTNGDLLGYYLGYREQGFGRQNSYNFTTI 110
P P + A+S I + W+ P+ N + G+Y+ YR + Y +
Sbjct: 1 GSTPITGPHIAYTEAVSDTQIMLKWTYIPSSNNNTPIQGFYIYYRPTDSDNDSDYKRDVV 60
Query: 111 PNRSDGAGVATLTGLRKYRKYDIVVQAFNEKGPGPMSSEVSVQT 154
+ L+ YDI +Q FNE G S+ + +T
Sbjct: 61 EGSKQ---WHMIGHLQPETSYDIKMQCFNEGGESEFSNVMICET 101
Score = 68.9 bits (169), Expect = 1e-15
Identities = 12/42 (28%), Positives = 17/42 (40%)
Query: 158 VPAAPPLDITCSALSSTSLSVTWQPPPLLLQNGEILGYKVYY 199
P P A+S T + + W P N I G+ +YY
Sbjct: 3 TPITGPHIAYTEAVSDTQIMLKWTYIPSSNNNTPIQGFYIYY 44
Score = 48.5 bits (116), Expect = 5e-08
Identities = 11/42 (26%), Positives = 22/42 (52%)
Query: 9 SGTEQWAVLQDLLPATLYRVRVLAENSLGAGRPSDPLLVHTE 50
G++QW ++ L P T Y +++ N G S+ ++ T+
Sbjct: 61 EGSKQWHMIGHLQPETSYDIKMQCFNEGGESEFSNVMICETK 102
>1wfo_A Sidekick 2; FN3, cell adhesion, structural genomics, riken
structural genomics/proteomics initiative, RSGI; NMR
{Homo sapiens} SCOP: b.1.2.1
Length = 130
Score = 101 bits (254), Expect = 4e-28
Identities = 34/133 (25%), Positives = 54/133 (40%), Gaps = 10/133 (7%)
Query: 32 AENSLGAGRPS-DPLLVHTEAEPPTAEPSGLHAVAISSDSIRVTWSPPPAHLTNGDLLGY 90
+ +G G PS P+L T + P P G+ + + S+R+ W PP A NG +L Y
Sbjct: 5 SSGRIGDGSPSHPPILERTLDDVPGP-PMGILFPEVRTTSVRLIWQPPAAP--NGIILAY 61
Query: 91 YLGYREQGFGRQNSYNFTTIPNRSDGAGVATLTGLRKYRKYDIVVQAFNEKGPGPMSSEV 150
+ +R + P+ T TGL+ Y + A KG G + +
Sbjct: 62 QITHRLNTTTANTATVEVLAPSARQ----YTATGLKPESVYLFRITAQTRKGWGEAAEAL 117
Query: 151 SVQTLEDVPAAPP 163
V T + + P
Sbjct: 118 VVTTEK--RSGPS 128
Score = 75.5 bits (186), Expect = 6e-18
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 135 VQAFNEKGPGPMSSE-VSVQTLEDVPAAPPLDITCSALSSTSLSVTWQPPPLLLQNGEIL 193
+ G G S + +TL+DVP PP+ I + +TS+ + WQPP NG IL
Sbjct: 3 SGSSGRIGDGSPSHPPILERTLDDVPG-PPMGILFPEVRTTSVRLIWQPP--AAPNGIIL 59
Query: 194 GYKVYY 199
Y++ +
Sbjct: 60 AYQITH 65
Score = 47.0 bits (112), Expect = 2e-07
Identities = 11/52 (21%), Positives = 21/52 (40%)
Query: 3 EWKSQNSGTEQWAVLQDLLPATLYRVRVLAENSLGAGRPSDPLLVHTEAEPP 54
+ + + L P ++Y R+ A+ G G ++ L+V TE
Sbjct: 75 ATVEVLAPSARQYTATGLKPESVYLFRITAQTRKGWGEAAEALVVTTEKRSG 126
>1x5f_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 120
Score = 100 bits (251), Expect = 9e-28
Identities = 31/126 (24%), Positives = 52/126 (41%), Gaps = 7/126 (5%)
Query: 37 GAGRPSDPLLVHTEAEPPTAEPSGLHAVAISSDSIRVTWSPPPAHLTNGDLLGYYLGYRE 96
G+ S T P+A P + A +S+ I++TW P + +GD L Y + Y +
Sbjct: 1 GSSGSSGEHAPATTGPLPSA-PRDVVASLVSTRFIKLTWRTPASD-PHGDNLTYSVFYTK 58
Query: 97 QGFGRQNSYNFTTIPNRSDGAGVATLTGLRKYRKYDIVVQAFNEKGPGPMSSEVSVQTLE 156
+G R+ N + T+ L Y V A N+ G G S+ + V+T
Sbjct: 59 EGIARERVENTSHPGEMQ-----VTIQNLMPATVYIFRVMAQNKHGSGESSAPLRVETQP 113
Query: 157 DVPAAP 162
+ +
Sbjct: 114 ESGPSS 119
Score = 60.9 bits (148), Expect = 2e-12
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 142 GPGPMSSEVSVQTLEDVPAAPPLDITCSALSSTSLSVTWQPPPLLLQNGEILGYKVYYE 200
G S E + T +P+ P D+ S +S+ + +TW+ P +G+ L Y V+Y
Sbjct: 1 GSSGSSGEHAPATTGPLPS-APRDVVASLVSTRFIKLTWRTPA-SDPHGDNLTYSVFYT 57
Score = 55.5 bits (134), Expect = 2e-10
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 10/65 (15%)
Query: 2 VEWKSQNSGTEQW----------AVLQDLLPATLYRVRVLAENSLGAGRPSDPLLVHTEA 51
V + + E+ +Q+L+PAT+Y RV+A+N G+G S PL V T+
Sbjct: 54 VFYTKEGIARERVENTSHPGEMQVTIQNLMPATVYIFRVMAQNKHGSGESSAPLRVETQP 113
Query: 52 EPPTA 56
E +
Sbjct: 114 ESGPS 118
>2ed8_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 106
Score = 99.2 bits (248), Expect = 2e-27
Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 13/115 (11%)
Query: 49 TEAEPPTAEPSGLHAVAISSDSIRVTWSPPPAHLTNGDLLGYYLGYREQGFGRQNSYNFT 108
+ + P L AV+ S SI +TW PP NG + GY L E G++ +
Sbjct: 3 SGSSGPGP-VENLQAVSTSPTSILITWEPPA--YANGPVQGYRLFCTEVSTGKEQNI--- 56
Query: 109 TIPNRSDGAGVATLTGLRKYRKYDIVVQAFNEKGPGPMSSEVSVQTLEDVPAAPP 163
+ S L GL+K+ +Y + A+N GPG + +++V TL D P
Sbjct: 57 EVDGLS-----YKLEGLKKFTEYSLRFLAYNRYGPGVSTDDITVVTLSDSG--PS 104
Score = 60.7 bits (148), Expect = 1e-12
Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 154 TLEDVPAAPPLDITCSALSSTSLSVTWQPPPLLLQNGEILGYKVYY 199
+ P P ++ + S TS+ +TW+PP NG + GY+++
Sbjct: 3 SGSSGPG-PVENLQAVSTSPTSILITWEPPA--YANGPVQGYRLFC 45
Score = 50.7 bits (122), Expect = 7e-09
Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 9/66 (13%)
Query: 2 VEWKSQNSGTEQW-------AVLQDLLPATLYRVRVLAENSLGAGRPSDPLLVHTEAEPP 54
+ ++G EQ L+ L T Y +R LA N G G +D + V T ++
Sbjct: 43 LFCTEVSTGKEQNIEVDGLSYKLEGLKKFTEYSLRFLAYNRYGPGVSTDDITVVTLSDSG 102
Query: 55 TAEPSG 60
SG
Sbjct: 103 --PSSG 106
>2ed7_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 119
Score = 97.1 bits (242), Expect = 2e-26
Identities = 30/126 (23%), Positives = 55/126 (43%), Gaps = 8/126 (6%)
Query: 37 GAGRPSDPLLVHTEAEPPTAEPSGLHAVAISSDSIRVTWSPPPAHLTNGDLLGYYLGYRE 96
G+ S + + + P+A P + V +SS +R++W PP G++ + + +
Sbjct: 1 GSSGSSGKPAIPSSSVLPSA-PRDVVPVLVSSRFVRLSWRPPAEA--KGNIQTFTVFFSR 57
Query: 97 QGFGRQNSYNFTTIPNRSDGAGVATLTGLRKYRKYDIVVQAFNEKGPGPMSSEVSVQTLE 156
+G R+ + N T + T+ L+ Y V A+NE GPG S + V T
Sbjct: 58 EGDNRERALNTTQPGSLQ-----LTVGNLKPEAMYTFRVVAYNEWGPGESSQPIKVATQP 112
Query: 157 DVPAAP 162
+ +
Sbjct: 113 ESGPSS 118
Score = 61.3 bits (149), Expect = 1e-12
Identities = 13/59 (22%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 142 GPGPMSSEVSVQTLEDVPAAPPLDITCSALSSTSLSVTWQPPPLLLQNGEILGYKVYYE 200
G S + ++ + +P+ P D+ +SS + ++W+PP G I + V++
Sbjct: 1 GSSGSSGKPAIPSSSVLPS-APRDVVPVLVSSRFVRLSWRPP--AEAKGNIQTFTVFFS 56
Score = 51.7 bits (124), Expect = 4e-09
Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 10/63 (15%)
Query: 2 VEWKSQNSGTEQW----------AVLQDLLPATLYRVRVLAENSLGAGRPSDPLLVHTEA 51
V + + E+ + +L P +Y RV+A N G G S P+ V T+
Sbjct: 53 VFFSREGDNRERALNTTQPGSLQLTVGNLKPEAMYTFRVVAYNEWGPGESSQPIKVATQP 112
Query: 52 EPP 54
E
Sbjct: 113 ESG 115
>1wfn_A Sidekick 2; FN3, cell adhesion, structural genomics, riken
structural genomics/proteomics initiative, RSGI; NMR
{Homo sapiens} SCOP: b.1.2.1
Length = 119
Score = 96.0 bits (239), Expect = 6e-26
Identities = 33/126 (26%), Positives = 47/126 (37%), Gaps = 10/126 (7%)
Query: 37 GAGRPSDPLLVHTEAEPPTAEPSGLHAVAISSDSIRVTWSPPPAHLTNGDLLGYYLGYRE 96
G+ S P LV T + P L I S++V+W P NG L GY + + E
Sbjct: 1 GSSGSSGPQLVRTHEDVPGP-VGHLSFSEILDTSLKVSWQEPG--EKNGILTGYRISWEE 57
Query: 97 QGFGRQNSYNFTTIPNRSDGAGVATLTGLRKYRKYDIVVQAFNEKGPGPMSSEVSVQTLE 156
++ +TGL Y I V A KG G +S+ S +
Sbjct: 58 YNRTNTRVTHYLPNVTLE-----YRVTGLTALTTYTIEVAAMTSKGQGQVSA--STISSG 110
Query: 157 DVPAAP 162
P+ P
Sbjct: 111 VPPSGP 116
Score = 73.6 bits (181), Expect = 2e-17
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 142 GPGPMSSEVSVQTLEDVPAAPPLDITCSALSSTSLSVTWQPPPLLLQNGEILGYKVYYEN 201
G S V+T EDVP ++ S + TSL V+WQ P +NG + GY++ +E
Sbjct: 1 GSSGSSGPQLVRTHEDVPGPVG-HLSFSEILDTSLKVSWQEP--GEKNGILTGYRISWEE 57
Query: 202 MRE 204
Sbjct: 58 YNR 60
Score = 44.4 bits (105), Expect = 2e-06
Identities = 13/60 (21%), Positives = 20/60 (33%), Gaps = 2/60 (3%)
Query: 1 DVEWKSQNSGTEQWAVLQDLLPATLYRVRVLAENSLGAGRPSDPLLVHTEAEPPTAEPSG 60
+ + L T Y + V A S G G+ S + + PP+ SG
Sbjct: 62 NTRVTHYLPNVTLEYRVTGLTALTTYTIEVAAMTSKGQGQVSASTI--SSGVPPSGPSSG 119
>1qr4_A Protein (tenascin); fibronectin type-III, heparin, extracellular
matrix, adhesion, fusion protein, structural protein;
2.55A {Gallus gallus} SCOP: b.1.2.1 b.1.2.1
Length = 186
Score = 94.4 bits (235), Expect = 1e-24
Identities = 24/147 (16%), Positives = 43/147 (29%), Gaps = 22/147 (14%)
Query: 58 PSGLHAVAISSDSIRVTWSPPPAHLTNGDLLGYYLGYREQGFGRQNSYNFTTIPNRSDGA 117
P L + ++ + W P Y L Y + +
Sbjct: 10 PKDLEVSDPTETTLSLRWRRPV-----AKFDRYRLTYVSPSGKKNEMEIPVDSTS----- 59
Query: 118 GVATLTGLRKYRKYDIVVQAFNEKGPGPMSSEVSVQTLEDVPAAPPLDITCSALSSTSLS 177
L GL +Y I + A + ++ P I+ S ++ S +
Sbjct: 60 --FILRGLDAGTEYTISLVAEKGRHKSKPTT-----IKGSTVVGSPKGISFSDITENSAT 112
Query: 178 VTWQPPPLLLQNGEILGYKVYYENMRE 204
V+W PP + Y+V Y +
Sbjct: 113 VSWTPPR-----SRVDSYRVSYVPITG 134
Score = 86.7 bits (215), Expect = 1e-21
Identities = 25/155 (16%), Positives = 50/155 (32%), Gaps = 17/155 (10%)
Query: 3 EWKSQNSGTEQWAVLQDLLPATLYRVRVLAENSLGAGRPSDPLLVHTEAEPPTAEPSGLH 62
+ + + +L+ L T Y + ++AE +P+ + + P G+
Sbjct: 48 KNEMEIPVDSTSFILRGLDAGTEYTISLVAEKGRHKSKPTTI----KGSTVVGS-PKGIS 102
Query: 63 AVAISSDSIRVTWSPPPAHLTNGDLLGYYLGYREQGFGRQNSYNFTTIPNRSDGAGVATL 122
I+ +S V+W+PP + Y + Y G N R L
Sbjct: 103 FSDITENSATVSWTPPR-----SRVDSYRVSYVPITGGTPNVVTVDGSKTR------TKL 151
Query: 123 TGLRKYRKYDIVVQAFNEKGPGPMSSEVSVQTLED 157
L Y++ + + ++T D
Sbjct: 152 VKLVPGVDYNVNIISVKGFEESE-PISGILKTALD 185
Score = 44.0 bits (104), Expect = 6e-06
Identities = 10/38 (26%), Positives = 18/38 (47%), Gaps = 5/38 (13%)
Query: 162 PPLDITCSALSSTSLSVTWQPPPLLLQNGEILGYKVYY 199
P D+ S + T+LS+ W+ P + Y++ Y
Sbjct: 9 NPKDLEVSDPTETTLSLRWRRPV-----AKFDRYRLTY 41
>2yrz_A Integrin beta-4; GP150, CD104 antigen, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 118
Score = 92.5 bits (230), Expect = 1e-24
Identities = 29/127 (22%), Positives = 44/127 (34%), Gaps = 11/127 (8%)
Query: 37 GAGRPSDPLLVHTEAEPPTAEPSGLHAVAISSDSIRVTWSPPPAHLTNGDLLGYYLGYRE 96
G+ S A P P+ L A+ S+RV+W P L GY + Y+
Sbjct: 1 GSSGSSGSHDSRLTAGVPDT-PTRLVFSALGPTSLRVSWQEP---RCERPLQGYSVEYQL 56
Query: 97 QGFGRQNSYNFTTIPNRSDGAGVATLTGLRKYRKYDIVVQAFNEKGPGPMSSEVSVQTLE 156
G + N S + L Y V+A +++G G V T+E
Sbjct: 57 LNGGELHRLNIPNPAQTS-----VVVEDLLPNHSYVFRVRAQSQEGWGREREG--VITIE 109
Query: 157 DVPAAPP 163
+ P
Sbjct: 110 SQVSGPS 116
Score = 64.7 bits (158), Expect = 6e-14
Identities = 19/58 (32%), Positives = 23/58 (39%), Gaps = 4/58 (6%)
Query: 142 GPGPMSSEVSVQTLEDVPAAPPLDITCSALSSTSLSVTWQPPPLLLQNGEILGYKVYY 199
G S + VP P + SAL TSL V+WQ P + GY V Y
Sbjct: 1 GSSGSSGSHDSRLTAGVPD-TPTRLVFSALGPTSLRVSWQEP---RCERPLQGYSVEY 54
Score = 47.8 bits (114), Expect = 1e-07
Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
Query: 3 EWKSQN--SGTEQWAVLQDLLPATLYRVRVLAENSLGAGRPSDPLLVHTEAEPPTAEPSG 60
E N + + V++DLLP Y RV A++ G GR + V T + SG
Sbjct: 61 ELHRLNIPNPAQTSVVVEDLLPNHSYVFRVRAQSQEGWGREREG--VITIESQVSGPSSG 118
>1wj3_A KIAA1496 protein; beta sandwich, PANG, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
neuropeptide; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 117
Score = 91.4 bits (227), Expect = 3e-24
Identities = 25/126 (19%), Positives = 45/126 (35%), Gaps = 11/126 (8%)
Query: 37 GAGRPSDPLLVHTEAEPPTAEPSGLHAVAISSDSIRVTWSPPPAHLTNGDLLGYYLGYRE 96
G+ S + V T+ PP+ P + A + + + W A ++ GY + YR
Sbjct: 1 GSSGSSGTVNVTTKKTPPSQPPGNVVWNATDT-KVLLNWEQVKAMENESEVTGYKVFYRT 59
Query: 97 QGFGRQNSYNFTTIPNRSDGAGVATLTGLRKYRKYDIVVQAFNEKGPGPMSSEVSVQTL- 155
+ N T L Y I V+A + G G S ++ + +
Sbjct: 60 S--SQNNVQVLNTNKTS-------AELVLPIKEDYIIEVKATTDGGDGTSSEQIRIPRIT 110
Query: 156 EDVPAA 161
P++
Sbjct: 111 SSGPSS 116
Score = 74.1 bits (182), Expect = 1e-17
Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 142 GPGPMSSEVSVQTLEDVPAAPPLDITCSALSSTSLSVTWQPPPLLLQNGEILGYKVYYEN 201
G S V+V T + P+ PP ++ + + T + + W+ + E+ GYKV+Y
Sbjct: 1 GSSGSSGTVNVTTKKTPPSQPPGNVVWN-ATDTKVLLNWEQVKAMENESEVTGYKVFYRT 59
Query: 202 MRE 204
+
Sbjct: 60 SSQ 62
Score = 38.7 bits (90), Expect = 2e-04
Identities = 10/57 (17%), Positives = 19/57 (33%), Gaps = 1/57 (1%)
Query: 1 DVEWKSQNSGTEQWAVLQDLLPATLYRVRVLAENSLGAGRPSDPLLVHTEAE-PPTA 56
+ Q T + + L Y + V A G G S+ + + P++
Sbjct: 60 SSQNNVQVLNTNKTSAELVLPIKEDYIIEVKATTDGGDGTSSEQIRIPRITSSGPSS 116
>2e7h_A Ephrin type-B receptor 4; FN3 domain, tyrosine- protein kinase
receptor HTK, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 109
Score = 91.0 bits (226), Expect = 4e-24
Identities = 31/111 (27%), Positives = 47/111 (42%), Gaps = 8/111 (7%)
Query: 49 TEAEPPTAEPSGLHAVAISSDSIRVTWSPPPAHLTNGDLLGYYLGYREQGFGRQNSYNFT 108
+ + P A S + S S+ + W+ P A +G +L Y + Y E+G +S F
Sbjct: 3 SGSSGPPA-VSDIRVTRSSPSSLSLAWAVPRAP--SGAVLDYEVKYHEKGAEGPSSVRFL 59
Query: 109 TIPNRSDGAGVATLTGLRKYRKYDIVVQAFNEKGPGPMSSEVSVQTLEDVP 159
A L GL++ Y + V+A +E G GP E QT D
Sbjct: 60 KTSENR-----AELRGLKRGASYLVQVRARSEAGYGPFGQEHHSQTQLDSG 105
Score = 54.0 bits (130), Expect = 5e-10
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Query: 154 TLEDVPAAPPLDITCSALSSTSLSVTWQPPPLLLQNGEILGYKVYYEN 201
+ P A DI + S +SLS+ W P +G +L Y+V Y
Sbjct: 3 SGSSGPPAVS-DIRVTRSSPSSLSLAWAVPR--APSGAVLDYEVKYHE 47
Score = 45.5 bits (108), Expect = 5e-07
Identities = 11/54 (20%), Positives = 17/54 (31%)
Query: 1 DVEWKSQNSGTEQWAVLQDLLPATLYRVRVLAENSLGAGRPSDPLLVHTEAEPP 54
+E A L+ L Y V+V A + G G T+ +
Sbjct: 52 GPSSVRFLKTSENRAELRGLKRGASYLVQVRARSEAGYGPFGQEHHSQTQLDSG 105
>1x5j_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 113
Score = 89.1 bits (221), Expect = 2e-23
Identities = 24/117 (20%), Positives = 39/117 (33%), Gaps = 8/117 (6%)
Query: 48 HTEAEPPTAEPSGLHAVAISSDSIRVTWSPP--PAHLTNGDLLGYYLGYREQGFGRQNSY 105
+ + P P G+ A +S D+IR+TW+ P H D Y + ++ Y
Sbjct: 2 SSGSSGPMMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNI-PANTKY 60
Query: 106 NFTTIPNRSDGAGVATLTGLRKYRKYDIVVQAFNEKGPGPMSSEVSVQTLEDVPAAP 162
S +TGL+ Y+ V + S T E +
Sbjct: 61 KNANATTLS-----YLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGTTFELSGPSS 112
Score = 49.4 bits (118), Expect = 2e-08
Identities = 11/48 (22%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Query: 154 TLEDVPAAPPLDITCSALSSTSLSVTWQPPPL--LLQNGEILGYKVYY 199
+ P PP+ + S LS ++ +TW L + + Y V +
Sbjct: 3 SGSSGPMMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRW 50
Score = 45.6 bits (108), Expect = 7e-07
Identities = 13/65 (20%), Positives = 22/65 (33%), Gaps = 10/65 (15%)
Query: 2 VEWKSQNSGTEQW---------AVLQDLLPATLYRVRVLAENSLGAGRPSDPLLVHT-EA 51
V WK+ ++ ++ L P TLY V+ + S T E
Sbjct: 48 VRWKTNIPANTKYKNANATTLSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGTTFEL 107
Query: 52 EPPTA 56
P++
Sbjct: 108 SGPSS 112
>2edd_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 123
Score = 89.2 bits (221), Expect = 2e-23
Identities = 26/128 (20%), Positives = 45/128 (35%), Gaps = 8/128 (6%)
Query: 37 GAGRPSDPLLVHTEAEPPTAEPSGLHAVAISSDSIRVTWSPP--PAHLTNGDLLGYYLGY 94
G+ S + P P G+ AVA++ D++RV+W+ P + ++ Y + +
Sbjct: 1 GSSGSSGFPTSVPDLSTPMLPPVGVQAVALTHDAVRVSWADNSVPKNQKTSEVRLYTVRW 60
Query: 95 REQGFGRQNSYNFTTIPNRSDGAGVATLTGLRKYRKYDIVVQAFNEKGPGPMSSEVSVQT 154
R Y + S T TGL+ Y+ V + S T
Sbjct: 61 RTSF-SASAKYKSEDTTSLS-----YTATGLKPNTMYEFSVMVTKNRRSSTWSMTAHATT 114
Query: 155 LEDVPAAP 162
E +
Sbjct: 115 YEASGPSS 122
Score = 49.9 bits (119), Expect = 2e-08
Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 2/60 (3%)
Query: 142 GPGPMSSEVSVQTLEDVPAAPPLDITCSALSSTSLSVTWQPP--PLLLQNGEILGYKVYY 199
G S + P PP+ + AL+ ++ V+W P + E+ Y V +
Sbjct: 1 GSSGSSGFPTSVPDLSTPMLPPVGVQAVALTHDAVRVSWADNSVPKNQKTSEVRLYTVRW 60
Score = 43.7 bits (103), Expect = 4e-06
Identities = 10/64 (15%), Positives = 20/64 (31%), Gaps = 9/64 (14%)
Query: 2 VEWKSQNSGTEQW---------AVLQDLLPATLYRVRVLAENSLGAGRPSDPLLVHTEAE 52
V W++ S + ++ L P T+Y V+ + + S T
Sbjct: 58 VRWRTSFSASAKYKSEDTTSLSYTATGLKPNTMYEFSVMVTKNRRSSTWSMTAHATTYEA 117
Query: 53 PPTA 56
+
Sbjct: 118 SGPS 121
>1x5i_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 126
Score = 88.3 bits (219), Expect = 7e-23
Identities = 34/135 (25%), Positives = 51/135 (37%), Gaps = 18/135 (13%)
Query: 34 NSLGAGRPSDPLLVHT------EAEPPTAEPSGLHAVAISSDSIRVTWSPPPAHLTNGDL 87
+S +G +D L T E P PS LH SI V+W+PP N +
Sbjct: 2 SSGSSGPATDWLSAETFESDLDETRVPEV-PSSLHVRP-LVTSIVVSWTPPENQ--NIVV 57
Query: 88 LGYYLGYREQGFGRQNSYNFTTIPNRSDGAGVATLTGLRKYRKYDIVVQAFNEKGPG-PM 146
GY +GY G ++ + T+ L Y I ++AFN G G P+
Sbjct: 58 RGYAIGYGI---GSPHAQTIKVDYKQR----YYTIENLDPSSHYVITLKAFNNVGEGIPL 110
Query: 147 SSEVSVQTLEDVPAA 161
+ P++
Sbjct: 111 YESAVTRPHTSGPSS 125
Score = 59.0 bits (143), Expect = 9e-12
Identities = 17/66 (25%), Positives = 26/66 (39%), Gaps = 8/66 (12%)
Query: 139 NEKGPGPMSSEVSVQTLEDV-----PAAPPLDITCSALSSTSLSVTWQPPPLLLQNGEIL 193
+ GP + +S +T E P + TS+ V+W PP QN +
Sbjct: 2 SSGSSGPATDWLSAETFESDLDETRVPEVPSSLHVRP-LVTSIVVSWTPPEN--QNIVVR 58
Query: 194 GYKVYY 199
GY + Y
Sbjct: 59 GYAIGY 64
Score = 43.2 bits (102), Expect = 5e-06
Identities = 9/55 (16%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 3 EWKSQNSGTEQWAVLQDLLPATLYRVRVLAENSLGAGRP-SDPLLVHTEAEPPTA 56
+ +++ +++L P++ Y + + A N++G G P + + P++
Sbjct: 71 AQTIKVDYKQRYYTIENLDPSSHYVITLKAFNNVGEGIPLYESAVTRPHTSGPSS 125
>2ede_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 114
Score = 87.8 bits (218), Expect = 7e-23
Identities = 27/114 (23%), Positives = 43/114 (37%), Gaps = 7/114 (6%)
Query: 48 HTEAEPPTAEPSGLHAVAI--SSDSIRVTWSPPPAHLTNGDLLGYYLGYREQGFGRQNSY 105
+ + PT+ P L + ++ V+W PP NG + Y L Y + +
Sbjct: 2 SSGSSGPTSAPKDLTVITREGKPRAVIVSWQPPLEA--NGKITAYILFYTLDKNIPIDDW 59
Query: 106 NFTTIPNRSDGAGVATLTGLRKYRKYDIVVQAFNEKGPGPMSSEVSVQTLEDVP 159
TI + L Y +QA N KG GP+S + +TL+
Sbjct: 60 IMETISGDRL---THQIMDLNLDTMYYFRIQARNSKGVGPLSDPILFRTLKVSG 110
Score = 58.6 bits (142), Expect = 1e-11
Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 154 TLEDVPAAPPLDITCSA--LSSTSLSVTWQPPPLLLQNGEILGYKVYYENMRELPMGK 209
+ P + P D+T ++ V+WQPP NG+I Y ++Y + +P+
Sbjct: 3 SGSSGPTSAPKDLTVITREGKPRAVIVSWQPPLE--ANGKITAYILFYTLDKNIPIDD 58
Score = 52.4 bits (126), Expect = 2e-09
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 3 EWKSQN-SGTEQWAVLQDLLPATLYRVRVLAENSLGAGRPSDPLLVHTEAEPP 54
+W + SG + DL T+Y R+ A NS G G SDP+L T
Sbjct: 58 DWIMETISGDRLTHQIMDLNLDTMYYFRIQARNSKGVGPLSDPILFRTLKVSG 110
>1bqu_A Protein (GP130); cytokine receptor, glycoprotein 130, interleukine
6 R beta subunit, signaling protein; 2.00A {Homo
sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1pvh_A 1bj8_A
Length = 215
Score = 90.4 bits (224), Expect = 8e-23
Identities = 35/166 (21%), Positives = 61/166 (36%), Gaps = 11/166 (6%)
Query: 3 EWKSQNSGTEQWAVLQDLLPATLYRVRVLAENSLGAGRPSDPLLVHTEAEPPTAEPSGLH 62
+ K++ V + V V AEN+LG SD + + P L
Sbjct: 53 DCKAKRDTPTSCTVDYSTVYFVNIEVWVEAENALGKVT-SDHINFDPVYKVKPNPPHNLS 111
Query: 63 AVAIS--SDSIRVTWSPPPAHLTNGDLLGYYLGYREQGFGRQNSYNFTTIPNRSDGAGVA 120
+ S +++TW+ P + + +L Y + YR + + +
Sbjct: 112 VINSEELSSILKLTWTNPS--IKSVIILKYNIQYRTKDASTWSQIPPEDTASTR---SSF 166
Query: 121 TLTGLRKYRKYDIVVQAFNEKGPGPMS---SEVSVQTLEDVPAAPP 163
T+ L+ + +Y ++ E G G S E S T ED P+ P
Sbjct: 167 TVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYEDRPSKEP 212
Score = 60.4 bits (146), Expect = 1e-11
Identities = 26/150 (17%), Positives = 44/150 (29%), Gaps = 16/150 (10%)
Query: 53 PPTAEPSGLHAVAISSDSIRVTWSPP-PAHLTNGDLLGYYLGYREQGFGRQNSYNFTTIP 111
PP P L + +R W HL + L
Sbjct: 7 PPEK-PKNLSCIVNEGKKMRCEWDGGRETHLETN----FTLKSEWAT-----HKFADCKA 56
Query: 112 NRSDGAGVATLTGLRKYRKYDIVVQAFNEKGPGPMSSEVSVQTLEDVPAAPPLDITCSAL 171
R + ++ V+A N G S ++ + V PP +++
Sbjct: 57 KRDTPTSCTVDYSTVYFVNIEVWVEAENALGKVT-SDHINFDPVYKVKPNPPHNLSVINS 115
Query: 172 SST--SLSVTWQPPPLLLQNGEILGYKVYY 199
L +TW P + ++ IL Y + Y
Sbjct: 116 EELSSILKLTWTNPSI--KSVIILKYNIQY 143
Score = 41.5 bits (97), Expect = 6e-05
Identities = 17/64 (26%), Positives = 23/64 (35%), Gaps = 7/64 (10%)
Query: 3 EWKSQN----SGTEQWAVLQDLLPATLYRVRVLAENSLGAGR---PSDPLLVHTEAEPPT 55
W + T +QDL P T Y R+ G G S+ T + P+
Sbjct: 150 TWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYEDRPS 209
Query: 56 AEPS 59
EPS
Sbjct: 210 KEPS 213
Score = 33.4 bits (76), Expect = 0.029
Identities = 5/47 (10%), Positives = 13/47 (27%), Gaps = 3/47 (6%)
Query: 158 VPAAPPLDITCSALSSTSLSVTWQPPPLLLQNGEILGYKVYYENMRE 204
+P P +++C + W + + + E
Sbjct: 6 LPPEKPKNLSCIVNEGKKMRCEWDGGR---ETHLETNFTLKSEWATH 49
>1x5l_A Ephrin type-A receptor 8; FN3 domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 111
Score = 87.0 bits (216), Expect = 2e-22
Identities = 26/117 (22%), Positives = 45/117 (38%), Gaps = 11/117 (9%)
Query: 47 VHTEAEPPTAEPSGLHAVAISSDSIRVTWSPPPAHLTNGDLLGYYLGYREQGFGRQNSYN 106
+ P+ + S+ + W P NG +L Y + Y E+ Q+
Sbjct: 4 GSSGQAAPSQ-VVVIRQERAGQTSVSLLWQEPEQ--PNGIILEYEIKYYEKDKEMQSYST 60
Query: 107 FTTIPNRSDGAGVATLTGLRKYRKYDIVVQAFNEKGPGPMSSEVSVQTLEDVPAAPP 163
+ R AT++GL+ +Y V+A G G S + V+T + P+ P
Sbjct: 61 LKAVTTR------ATVSGLKPGTRYVFQVRARTSAGCGRFSQAMEVETGK--PSGPS 109
Score = 60.8 bits (148), Expect = 1e-12
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
Query: 150 VSVQTLEDVPAAPPLDITCSALSSTSLSVTWQPPPLLLQNGEILGYKVYY 199
S + + P+ I TS+S+ WQ P NG IL Y++ Y
Sbjct: 2 SSGSSGQAAPSQVV-VIRQERAGQTSVSLLWQEPE--QPNGIILEYEIKY 48
Score = 49.3 bits (118), Expect = 3e-08
Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Query: 1 DVEWKSQNSGTEQWAVLQDLLPATLYRVRVLAENSLGAGRPSDPLLVHTEAEPPTAEPSG 60
+++ S A + L P T Y +V A S G GR S + V T P+ SG
Sbjct: 54 EMQSYSTLKAVTTRATVSGLKPGTRYVFQVRARTSAGCGRFSQAMEVET--GKPSGPSSG 111
>1ujt_A KIAA1568 protein; fibronectin type III domain, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 120
Score = 86.1 bits (213), Expect = 4e-22
Identities = 23/101 (22%), Positives = 46/101 (45%), Gaps = 6/101 (5%)
Query: 63 AVAISSDSIRVTWSPPPAHLTNGDLLGYYLGYREQGFGRQNSYNFTTIPNRSDGAGVATL 122
V ++ +++VTW+ + GY + YR+ G Q + ++ + + A L
Sbjct: 24 PVVLTPTTVQVTWTVDR---QPQFIQGYRVMYRQTS-GLQATSSWQNLDAKVPTERSAVL 79
Query: 123 TGLRKYRKYDIVVQAFNEKGPGPMSSEVSVQTLEDVPAAPP 163
L+K Y+I V+ + + G S +V+T E+ + P
Sbjct: 80 VNLKKGVTYEIKVRPYFNEFQGMDSESKTVRTTEE--SGPS 118
Score = 48.0 bits (114), Expect = 1e-07
Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Query: 8 NSGTEQWAVLQDLLPATLYRVRVLAENSLGAGRPSDPLLVHT--EAEPPTA 56
TE+ AVL +L Y ++V + G S+ V T E+ P +
Sbjct: 70 KVPTERSAVLVNLKKGVTYEIKVRPYFNEFQGMDSESKTVRTTEESGPSSG 120
Score = 39.1 bits (91), Expect = 1e-04
Identities = 12/37 (32%), Positives = 16/37 (43%), Gaps = 3/37 (8%)
Query: 170 ALSSTSLSVTWQPPPLLLQNGEILGYKVYYENMRELP 206
L+ T++ VTW Q I GY+V Y L
Sbjct: 26 VLTPTTVQVTWTVDR---QPQFIQGYRVMYRQTSGLQ 59
>2djs_A Ephrin type-B receptor 1; tyrosine-protein kinase receptor EPH-2,
NET, HEK6, ELK, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 108
Score = 84.0 bits (208), Expect = 2e-21
Identities = 29/111 (26%), Positives = 51/111 (45%), Gaps = 9/111 (8%)
Query: 49 TEAEPPTAEPSGLHAVAISSDSIRVTWSPPPAHLTNGDLLGYYLGYREQGFGRQNSYNFT 108
+ + P+ +H V+ + SI ++W P NG +L Y + Y E+ N +N +
Sbjct: 3 SGSSGPST-VPIMHQVSATMRSITLSWPQPEQ--PNGIILDYEIRYYEKE---HNEFNSS 56
Query: 109 TIPNRSDGAGVATLTGLRKYRKYDIVVQAFNEKGPGPMSSEVSVQTLEDVP 159
++++ A + GLR Y + V+A G G S ++ QTL D
Sbjct: 57 MARSQTNTA---RIDGLRPGMVYVVQVRARTVAGYGKFSGKMCFQTLTDSG 104
Score = 53.6 bits (129), Expect = 7e-10
Identities = 11/51 (21%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
Query: 154 TLEDVPAAPPLDITCSALSSTSLSVTWQPPPLLLQNGEILGYKVYYENMRE 204
+ P+ P + + + S++++W P NG IL Y++ Y
Sbjct: 3 SGSSGPSTVP-IMHQVSATMRSITLSWPQPE--QPNGIILDYEIRYYEKEH 50
Score = 44.7 bits (106), Expect = 1e-06
Identities = 12/49 (24%), Positives = 18/49 (36%)
Query: 6 SQNSGTEQWAVLQDLLPATLYRVRVLAENSLGAGRPSDPLLVHTEAEPP 54
S A + L P +Y V+V A G G+ S + T +
Sbjct: 56 SMARSQTNTARIDGLRPGMVYVVQVRARTVAGYGKFSGKMCFQTLTDSG 104
>3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding
homology region (CHR), cell MEMB disease mutation,
glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo
sapiens}
Length = 483
Score = 90.7 bits (224), Expect = 2e-21
Identities = 27/157 (17%), Positives = 53/157 (33%), Gaps = 8/157 (5%)
Query: 2 VEWKSQNSGTEQWAVLQDLLPATLYRVRVLAENSLGAGRPSDPLLVHTEAEPPTAEPSGL 61
++ + + Q L +Y + A N LG S L+ TE P P+
Sbjct: 331 LKRAEAPTNESYQLLFQMLPNQEIYNFTLNAHNPLGRS-QSTILVNITEKVYPHT-PTSF 388
Query: 62 HAVAISSDSIRVTWSPPPAHLTNGDLLGYYLGYREQGFGRQNSYNFTTIPNRSDGAGVAT 121
I+S +++++W P + ++ ++ TI + + +
Sbjct: 389 KVKDINSTAVKLSWHLPG--NFAKINFLCEIEIKKSNSVQEQRN--VTIQGVENSSYLVA 444
Query: 122 LTGLRKYRKYDIVVQAFNE--KGPGPMSSEVSVQTLE 156
L L Y Y ++ E S++ T E
Sbjct: 445 LDKLNPYTLYTFRIRCSTETFWKWSKWSNKKQHLTTE 481
Score = 89.5 bits (221), Expect = 4e-21
Identities = 27/156 (17%), Positives = 46/156 (29%), Gaps = 8/156 (5%)
Query: 47 VHTEAEPPTAEPSGLHAVAISSDSIRVTWSPPPA-HLTNGDLLGYYLGYREQGFGRQNSY 105
V PP P L+ I +W+P L Y L G
Sbjct: 275 VIFAGYPP-DTPQQLNCETHDLKEIICSWNPGRVTALVGPRATSYTLVESFSG----KYV 329
Query: 106 NFTTIPNRSDGAGVATLTGLRKYRKYDIVVQAFNEKGPGPMSSEVSVQTLEDVPAAPPLD 165
++ + L Y+ + A N G S + V E V P
Sbjct: 330 RLKRAEAPTNESYQLLFQMLPNQEIYNFTLNAHNPLGRS--QSTILVNITEKVYPHTPTS 387
Query: 166 ITCSALSSTSLSVTWQPPPLLLQNGEILGYKVYYEN 201
++ST++ ++W P + + ++ N
Sbjct: 388 FKVKDINSTAVKLSWHLPGNFAKINFLCEIEIKKSN 423
Score = 46.4 bits (109), Expect = 2e-06
Identities = 20/140 (14%), Positives = 47/140 (33%), Gaps = 17/140 (12%)
Query: 61 LHAVAISSDSIRVTWSPPPAHLTNGDLLGYYLGYREQGFG-RQNSYNFTTIPNRSDGAGV 119
L V + + +W P G Y + ++ Q IP S G
Sbjct: 2 LKCVTNNLQVWQCSWKAP---SGTGRGTDYEVCIEQRSRSCYQLEKTSIKIPALSHGD-- 56
Query: 120 ATLTGLRKYRKYDIVVQAFNEKGPGPMSSEVSVQTLEDVPAAPPLDITCSALSSTSLSVT 179
Y+I + + ++ G ++ Q + +P P + + S+++L +
Sbjct: 57 -----------YEITINSLHDFGSSTSKFTLNEQNVSLIPDTPEILQLSADFSTSTLYLK 105
Query: 180 WQPPPLLLQNGEILGYKVYY 199
W + + + +++
Sbjct: 106 WNDRGSVFPHRSNVIWEIKV 125
Score = 39.4 bits (91), Expect = 4e-04
Identities = 9/80 (11%), Positives = 15/80 (18%), Gaps = 7/80 (8%)
Query: 121 TLTGLRKYRKYDIVVQAFNEKGPGPMSSEVSVQTLEDVPAAPPLDITCSALSSTSLSVTW 180
+ + V E P P + C + +W
Sbjct: 249 KIRNISVSASSGTNVVFTTEDNIF------GTVIFAGYPPDTPQQLNCETHDLKEIICSW 302
Query: 181 QPP-PLLLQNGEILGYKVYY 199
P L Y +
Sbjct: 303 NPGRVTALVGPRATSYTLVE 322
>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor
complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1
b.1.2.1 b.1.2.1 PDB: 1p9m_A
Length = 303
Score = 88.7 bits (219), Expect = 2e-21
Identities = 32/160 (20%), Positives = 55/160 (34%), Gaps = 11/160 (6%)
Query: 3 EWKSQNSGTEQWAVLQDLLPATLYRVRVLAENSLGAGRPSDPLLVHTEAEPPTAEPSGLH 62
+ K++ V + V V AEN+LG P P L
Sbjct: 149 DCKAKRDTPTSCTVDYSTVYFVNIEVWVEAENALGKVTSDHINFDPVYKVKPNP-PHNLS 207
Query: 63 AVAIS--SDSIRVTWSPPPAHLTNGDLLGYYLGYREQGFGRQNSYNFTTIPNRSDGAGVA 120
+ S +++TW+ P + + +L Y + YR + + +
Sbjct: 208 VINSEELSSILKLTWTNPS--IKSVIILKYNIQYRTKDASTWSQIPPEDTASTR---SSF 262
Query: 121 TLTGLRKYRKYDIVVQAFNEKGPGPMS---SEVSVQTLED 157
T+ L+ + +Y ++ E G G S E S T ED
Sbjct: 263 TVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYED 302
Score = 61.4 bits (148), Expect = 1e-11
Identities = 29/178 (16%), Positives = 52/178 (29%), Gaps = 17/178 (9%)
Query: 24 TLYRVRVLAENSLGAGRPSDPLLVHTEAEPPTAEPSGLHAVAISSDSIRVTWSPPPAHLT 83
+L L ++ P +P L + +R W T
Sbjct: 77 IQLTCNILTFGQLEQNVYGITIISGL----PPEKPKNLSCIVNEGKKMRCEWDGGRE--T 130
Query: 84 NGDLLGYYLGYREQGFGRQNSYNFTTIPNRSDGAGVATLTGLRKYRKYDIVVQAFNEKGP 143
+ + + L R + ++ V+A N G
Sbjct: 131 HLET-NFTLKSE-----WATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAENALGK 184
Query: 144 GPMSSEVSVQTLEDVPAAPP--LDITCSALSSTSLSVTWQPPPLLLQNGEILGYKVYY 199
S ++ + V PP L + S S+ L +TW P + ++ IL Y + Y
Sbjct: 185 VT-SDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSI--KSVIILKYNIQY 239
>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein,
immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG;
2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB:
1p9m_C 2arw_A
Length = 325
Score = 88.4 bits (218), Expect = 4e-21
Identities = 28/181 (15%), Positives = 61/181 (33%), Gaps = 11/181 (6%)
Query: 4 WKSQNSGTEQWAVLQDLLPATLYRVRVLAENSLGAGRPSDPLLVHTEAEPPTAEPSGLHA 63
SQ S + ++ Y V + +S+G + S P+ +
Sbjct: 147 QYSQESQKFSCQLAVPEGDSSFYIVSMCVASSVG-SKFSKTQTFQGCGILQPDPPANITV 205
Query: 64 VAISSDS--IRVTWSPPPAHLTNGDLLGYYLGYREQGFGRQNSYNFTTIPNRSDGAGVAT 121
A++ + + VTW P + ++ L + L YR + ++ + +
Sbjct: 206 TAVARNPRWLSVTWQDPHSWNSSFYRLRFELRYRAERSKTFTTWMVKDLQHH------CV 259
Query: 122 LTGLRKYRKYDIVVQAFNEKGPGPMS--SEVSVQTLEDVPAAPPLDITCSALSSTSLSVT 179
+ ++ + ++A E G G S S ++ T +PP + S +
Sbjct: 260 IHDAWSGLRHVVQLRAQEEFGQGEWSEWSPEAMGTPWTESRSPPAENEVSTPMQALTTNK 319
Query: 180 W 180
Sbjct: 320 D 320
Score = 53.7 bits (128), Expect = 7e-09
Identities = 26/149 (17%), Positives = 45/149 (30%), Gaps = 7/149 (4%)
Query: 54 PTAEPSGLHAVAISSDSIRVTWSPPPAHLTNGDLLGYYLGYREQGFGRQNSYNFTTIPNR 113
P EP ++ W P L R+ + ++
Sbjct: 94 PPEEPQLSCFRKSPLSNVVCEWGPRSTP---SLTTKAVLLVRKFQNSPAEDFQEPCQYSQ 150
Query: 114 SDGAGVATLTG-LRKYRKYDIVVQAFNEKGPGPMSSEVSVQTLEDVPAAPPLDITCSAL- 171
L Y + + + G S + Q + PP +IT +A+
Sbjct: 151 ESQKFSCQLAVPEGDSSFYIVSMCVASSVGSKF-SKTQTFQGCGILQPDPPANITVTAVA 209
Query: 172 -SSTSLSVTWQPPPLLLQNGEILGYKVYY 199
+ LSVTWQ P + L +++ Y
Sbjct: 210 RNPRWLSVTWQDPHSWNSSFYRLRFELRY 238
>2edb_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 116
Score = 82.9 bits (205), Expect = 7e-21
Identities = 29/126 (23%), Positives = 52/126 (41%), Gaps = 12/126 (9%)
Query: 37 GAGRPSDPLLVHTEAEPPTAEPSGLHAVAISSDSIRVTWSPPPAHLTNGDLLGYYLGYRE 96
G+ S P E++ P PS LH ++ I ++W+PP N + GY +GY
Sbjct: 1 GSSGSSGPENDLDESQVPDQ-PSSLHVRP-QTNCIIMSWTPPLNP--NIVVRGYIIGYGV 56
Query: 97 QGFGRQNSYNFTTIPNRSDGAGVATLTGLRKYRKYDIVVQAFNEKGPG-PMSSEVSVQTL 155
G + + ++ L Y I ++AFN G G P+ + +++
Sbjct: 57 ---GSPYAETVRVDSKQRY----YSIERLESSSHYVISLKAFNNAGEGVPLYESATTRSI 109
Query: 156 EDVPAA 161
P++
Sbjct: 110 TSGPSS 115
Score = 55.5 bits (134), Expect = 1e-10
Identities = 12/58 (20%), Positives = 20/58 (34%), Gaps = 4/58 (6%)
Query: 142 GPGPMSSEVSVQTLEDVPAAPPLDITCSALSSTSLSVTWQPPPLLLQNGEILGYKVYY 199
G S + VP P + + + ++W PP N + GY + Y
Sbjct: 1 GSSGSSGPENDLDESQVPDQPS-SLHVRP-QTNCIIMSWTPPL--NPNIVVRGYIIGY 54
Score = 40.1 bits (94), Expect = 6e-05
Identities = 8/55 (14%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Query: 3 EWKSQNSGTEQWAVLQDLLPATLYRVRVLAENSLGAGRP-SDPLLVHTEAEPPTA 56
+ +++ ++ L ++ Y + + A N+ G G P + + P++
Sbjct: 61 AETVRVDSKQRYYSIERLESSSHYVISLKAFNNAGEGVPLYESATTRSITSGPSS 115
>3lb6_C IL-13, interleukin-13 receptor subunit alpha-2; cytokine, decoy,
decoy receptor, glycoprotein; HET: MLY NAG; 3.05A {Homo
sapiens} PDB: 3lb6_D*
Length = 380
Score = 85.6 bits (211), Expect = 5e-20
Identities = 31/207 (14%), Positives = 57/207 (27%), Gaps = 20/207 (9%)
Query: 3 EWKSQNSGTEQWAVLQDLLPATLYRVRVLAEN-----SLGAGRPSDPLLVHTEAEPPTAE 57
WK+ + + DL + L S ++ + P
Sbjct: 80 TWKTIITKNLHYKDGFDLNKGIEAXIHTLLPWQCTNGSEVQSSWAETTYWISPQGIPETX 139
Query: 58 PSGLHAVAISSDSIRVTWSPPPAHLTNGDLLGYYLGYREQGFGRQNSYNFTTIPNRSDGA 117
+ V + + +W P Y L Y + + +
Sbjct: 140 VQDMDCVYYNWQYLLCSWKPGI---GVLLDTNYNLFYW-----YEGLDHALQCVDYIKAD 191
Query: 118 GVAT-----LTGLRKYRKYDIVVQAFNEKGPGPMSSEVSVQTLEDVPAAPPLDITCSALS 172
G Y+ + I V +E P SS + Q V PP+ +T + S
Sbjct: 192 GQNIGCRFPYLEASDYKDFYICVNGSSENKPIR-SSYFTFQLQNIVKPLPPVYLTFTRES 250
Query: 173 STSLSVTWQPPPLLLQNGEILGYKVYY 199
S + + W P + Y++
Sbjct: 251 SCEIKLKWSIPLGPIPAR-CFDYEIEI 276
Score = 65.6 bits (159), Expect = 6e-13
Identities = 24/156 (15%), Positives = 45/156 (28%), Gaps = 9/156 (5%)
Query: 47 VHTEAEPPTAEPSGLHAVAISSDS-IRVTWSPPPAHLTNGDL-LGYYLGYREQGFGRQNS 104
++ E P V + + W PP + + + Y L YR G +
Sbjct: 24 SSSDTEIKVNPPQDFEIVDPGYLGYLYLQWQPPLSLDHFKECTVEYELKYRNIG---SET 80
Query: 105 YNFTTIPNRSDGAGVATLTGLRKYRKYDIVVQAFNEKG-PGPMSSEVSVQTLEDVPAAPP 163
+ N G G+ + Q N + + + +P
Sbjct: 81 WKTIITKNLHYKDGFDLNKGIEAXIHTLLPWQCTNGSEVQSSWAETTYWISPQGIPETXV 140
Query: 164 LDITCSALSSTSLSVTWQPPPLLLQNGEILGYKVYY 199
D+ C + L +W+P Y ++Y
Sbjct: 141 QDMDCVYYNWQYLLCSWKPGI---GVLLDTNYNLFY 173
Score = 41.7 bits (97), Expect = 8e-05
Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
Query: 150 VSVQTLEDVPAAPPLDITCSALSSTS-LSVTWQPPPLLLQNGEI-LGYKVYYEN 201
+ + ++ PP D L + WQPP L E + Y++ Y N
Sbjct: 22 CTSSSDTEIKVNPPQDFEIVDPGYLGYLYLQWQPPLSLDHFKECTVEYELKYRN 75
>2ha1_A Fibronectin; beta sandwich, protein-protein complex, rigid BODY
docking, cell adhesion, structural protein; NMR {Homo
sapiens}
Length = 201
Score = 81.2 bits (200), Expect = 2e-19
Identities = 21/157 (13%), Positives = 47/157 (29%), Gaps = 28/157 (17%)
Query: 58 PSGLHAVAISSDSIRVTWSPPPAHLTNGDLLGYYLGYREQGFGRQNSYNFTTIPNRSDGA 117
+ +S + W+ P + Y L +R + + S
Sbjct: 5 EVFITETPSQPNSHPIQWNAPQ----PSHISKYILRWRPKNSVGRWKEATIPGHLNS--- 57
Query: 118 GVATLTGLRKYRKYDIVVQAFNEKGPGPMSSEVSVQTLEDVPAAP--------------P 163
T+ GL+ Y+ + + + G ++ T P
Sbjct: 58 --YTIKGLKPGVVYEGQLISIQQYGHQEVTRFDFTTTSTSTPVTSNTVTGETTPFSPLVA 115
Query: 164 LDITCSALSSTSLSVTWQPPPLLLQNGEILGYKVYYE 200
+ + ++++S V+W + G++V YE
Sbjct: 116 TSESVTEITASSFVVSWVSAS-----DTVSGFRVEYE 147
Score = 79.3 bits (195), Expect = 1e-18
Identities = 25/160 (15%), Positives = 45/160 (28%), Gaps = 24/160 (15%)
Query: 9 SGTEQWAVLQDLLPATLYRVRVLAENSLGAGRPSDPLLVHTEAEPPTA------------ 56
G ++ L P +Y ++++ G + T P
Sbjct: 52 PGHLNSYTIKGLKPGVVYEGQLISIQQYGHQEVTRFDFTTTSTSTPVTSNTVTGETTPFS 111
Query: 57 --EPSGLHAVAISSDSIRVTWSPPPAHLTNGDLLGYYLGYREQGFGRQNSYNFTTIPNRS 114
+ I++ S V+W + G+ + Y G + Y S
Sbjct: 112 PLVATSESVTEITASSFVVSWVSAS-----DTVSGFRVEYELSEEGDEPQYLDLPSTATS 166
Query: 115 DGAGVATLTGLRKYRKYDIVVQAFNEKGPGPMSSEVSVQT 154
+ L RKY + V +E G + S T
Sbjct: 167 -----VNIPDLLPGRKYIVNVYQISEDGEQSLILSTSQTT 201
>2dm4_A Sortilin-related receptor; beta-sandwich, sorting protein-related
receptor containing LDLR class A repeats, sorla; NMR
{Homo sapiens}
Length = 108
Score = 75.6 bits (186), Expect = 3e-18
Identities = 22/117 (18%), Positives = 37/117 (31%), Gaps = 15/117 (12%)
Query: 49 TEAEPPTAEPSGLHAVAI--SSDSIRVTWSPPPAHLTNGDLLGYYLGYREQGFGRQNSYN 106
+ + P A P L + I W+PP +G + Y + Y G +
Sbjct: 3 SGSSGPDA-PRNLQLSLPREAEGVIVGHWAPPIHT--HGLIREYIVEYSRSG---SKMWA 56
Query: 107 FTTIPNRSDGAGVATLTGLRKYRKYDIVVQAFNEKGPGPMSSEVSVQTLEDVPAAPP 163
+ + L Y + V A +G G S S+ T++ P
Sbjct: 57 SQRAASNF-----TEIKNLLVNTLYTVRVAAVTSRGIGNWSDSKSITTIKGSG--PS 106
Score = 52.8 bits (127), Expect = 1e-09
Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 3/47 (6%)
Query: 154 TLEDVPAAPP-LDITCSALSSTSLSVTWQPPPLLLQNGEILGYKVYY 199
+ P AP L ++ + + W PP + +G I Y V Y
Sbjct: 3 SGSSGPDAPRNLQLSLPREAEGVIVGHWAPP--IHTHGLIREYIVEY 47
Score = 49.0 bits (117), Expect = 3e-08
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
Query: 3 EWKSQNSGTEQWAVLQDLLPATLYRVRVLAENSLGAGRPSDPLLVHT-EAEPPTAEPSG 60
W SQ + + +++LL TLY VRV A S G G SD + T + P SG
Sbjct: 54 MWASQRAASNF-TEIKNLLVNTLYTVRVAAVTSRGIGNWSDSKSITTIKGSGP---SSG 108
>3t04_D Monobody 7C12; engineered binding protein, antibody mimic,
protein-protein SH2 domain, ATP-binding, phosphoprotein;
2.10A {Homo sapiens}
Length = 103
Score = 74.8 bits (184), Expect = 5e-18
Identities = 24/108 (22%), Positives = 45/108 (41%), Gaps = 9/108 (8%)
Query: 48 HTEAEPPTAEPSGLHAVAISSDSIRVTWSPPPAHLTNGDLLGYYLGYREQGFGRQNSYNF 107
+ + + P+ L V + S++++W + ++ Y + Y E G G F
Sbjct: 2 GSGSSVSSV-PTKLEVVDATPTSLKISWDAYYSS--WQNVKYYRITYGETG-GDSPVQEF 57
Query: 108 TTIPNRSDGAGVATLTGLRKYRKYDIVVQAFNEKGPGPMSSE-VSVQT 154
T S AT++GL+ Y I V A++ PG + +S+
Sbjct: 58 TVPGYYST----ATISGLKPGVDYTITVYAYDTFFPGYEPNSPISINY 101
Score = 48.2 bits (115), Expect = 5e-08
Identities = 7/44 (15%), Positives = 16/44 (36%), Gaps = 2/44 (4%)
Query: 156 EDVPAAPPLDITCSALSSTSLSVTWQPPPLLLQNGEILGYKVYY 199
++ P + + TSL ++W + Y++ Y
Sbjct: 4 GSSVSSVPTKLEVVDATPTSLKISWDAYY--SSWQNVKYYRITY 45
Score = 36.3 bits (84), Expect = 0.001
Identities = 9/42 (21%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Query: 9 SGTEQWAVLQDLLPATLYRVRVLAENSLGAGRP-SDPLLVHT 49
G A + L P Y + V A ++ G + P+ ++
Sbjct: 60 PGYYSTATISGLKPGVDYTITVYAYDTFFPGYEPNSPISINY 101
>1x4x_A Fibronectin type-III domain containing protein 3A; FN3,
immunoglobulin-like beta- sandwich fold, KIAA0970,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 106
Score = 74.6 bits (184), Expect = 6e-18
Identities = 24/115 (20%), Positives = 38/115 (33%), Gaps = 14/115 (12%)
Query: 49 TEAEPPTAEPSGLHAVAISSDSIRVTWSPPPAHLTNGDLLGYYLGYREQGFGRQNSYNFT 108
+ + P S+ +V W P ++ D+ Y L + +
Sbjct: 3 SGSSGPDQ-CKPPQVTCRSATCAQVNWEVPLSN--GTDVTEYRLEWGGVE---GSMQICY 56
Query: 109 TIPNRSDGAGVATLTGLRKYRKYDIVVQAFNEKGPGPMSSEVSVQTLEDVPAAPP 163
P S + GL Y VQA + G GP S V+ T P++ P
Sbjct: 57 CGPGLS-----YEIKGLSPATTYYCRVQALSVVGAGPFSEVVACVTP---PSSGP 103
Score = 51.1 bits (123), Expect = 5e-09
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 3 EWKSQNSGTEQWAVLQDLLPATLYRVRVLAENSLGAGRPSDPLLVHTEAEPPTAEPS 59
+ G ++ L PAT Y RV A + +GAG S+ + T PP++ PS
Sbjct: 51 SMQICYCGPGLSYEIKGLSPATTYYCRVQALSVVGAGPFSEVVACVT---PPSSGPS 104
Score = 41.1 bits (97), Expect = 2e-05
Identities = 7/46 (15%), Positives = 16/46 (34%), Gaps = 3/46 (6%)
Query: 154 TLEDVPAAPPLDITCSALSSTSLSVTWQPPPLLLQNGEILGYKVYY 199
+ P + S+T V W+ P ++ Y++ +
Sbjct: 3 SGSSGPDQCK-PPQVTCRSATCAQVNWEVPL--SNGTDVTEYRLEW 45
>1x5a_A Ephrin type-A receptor 1; tyrosine-protein kinase receptor, ESK,
fibronectin type III (FN3) domain, structural genomics,
NPPSFA; NMR {Mus musculus} SCOP: b.1.2.1
Length = 107
Score = 74.4 bits (183), Expect = 1e-17
Identities = 22/111 (19%), Positives = 32/111 (28%), Gaps = 13/111 (11%)
Query: 53 PPTAEPSGLHAVAISSDSIRVTWSPPPAHLTNGDLLGYYLGYREQGFGRQNSYNFTTIPN 112
+ L V + +TW+ G L Y L Q
Sbjct: 8 AESLSGLSLKLVKKEPRQLELTWAGSRPRNPGG-NLSYELHVLNQDEEWHQMVLEPR--- 63
Query: 113 RSDGAGVATLTGLRKYRKYDIVVQAFNEKGPGPMSSEVSVQTLEDVPAAPP 163
LT L+ Y + V+ GPGP S + +T P+ P
Sbjct: 64 -------VLLTKLQPDTTYIVRVRTLTPLGPGPFSPDHEFRTSP--PSGPS 105
Score = 45.9 bits (109), Expect = 4e-07
Identities = 8/43 (18%), Positives = 14/43 (32%), Gaps = 1/43 (2%)
Query: 159 PAAPPLDITCSALSSTSLSVTWQPPPLLLQNGEILGYKVYYEN 201
+ L + L +TW G L Y+++ N
Sbjct: 9 ESLSGLSLKLVKKEPRQLELTWAGSRPRNPGG-NLSYELHVLN 50
Score = 44.8 bits (106), Expect = 1e-06
Identities = 18/56 (32%), Positives = 21/56 (37%), Gaps = 2/56 (3%)
Query: 5 KSQNSGTEQWAVLQDLLPATLYRVRVLAENSLGAGRPSDPLLVHTEAEPPTAEPSG 60
+ E +L L P T Y VRV LG G S T PP+ SG
Sbjct: 54 EWHQMVLEPRVLLTKLQPDTTYIVRVRTLTPLGPGPFSPDHEFRT--SPPSGPSSG 107
>2dn7_A Receptor-type tyrosine-protein phosphatase F; LAR protein,
leukocyte antigen related, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: b.1.2.1
Length = 107
Score = 73.6 bits (181), Expect = 2e-17
Identities = 29/114 (25%), Positives = 45/114 (39%), Gaps = 11/114 (9%)
Query: 49 TEAEPPTAEPSGLHAVAISSDSIRVTWSPPPAHLTNGDLLGYYLGYREQGFGRQNSYNFT 108
+ + P P+ + + ++ + W PP G+LLGY L Y R N+ +F
Sbjct: 3 SGSSGPGR-PT-MMISTTAMNTALLQWHPPKE--LPGELLGYRLQYCRADEARPNTIDFG 58
Query: 109 TIPNRSDGAGVATLTGLRKYRKYDIVVQAFNEKGPGPMSSEVSVQTLEDVPAAP 162
T+TGL K Y + A N G G E ++T ED+
Sbjct: 59 KDDQH------FTVTGLHKGTTYIFRLAAKNRAGLGE-EFEKEIRTPEDLSGPS 105
Score = 46.6 bits (111), Expect = 2e-07
Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
Query: 154 TLEDVPAAPPLDITCSALSSTSLSVTWQPPPLLLQNGEILGYKVYY 199
+ P P + I+ + + + W PP GE+LGY++ Y
Sbjct: 3 SGSSGPGRPTMMIS--TTAMNTALLQWHPP--KELPGELLGYRLQY 44
Score = 39.3 bits (92), Expect = 1e-04
Identities = 11/68 (16%), Positives = 20/68 (29%), Gaps = 11/68 (16%)
Query: 2 VEWKSQNSGTEQW---------AVLQDLLPATLYRVRVLAENSLGAGRPSDPLLVHTEAE 52
+++ + + L T Y R+ A+N G G + + E
Sbjct: 42 LQYCRADEARPNTIDFGKDDQHFTVTGLHKGTTYIFRLAAKNRAGLGEEFEKEIRTPEDL 101
Query: 53 PPTAEPSG 60
SG
Sbjct: 102 SGP--SSG 107
>3se4_A Interferon alpha/beta receptor 1; type I interferon signaling
complex, extracellular space, IM system receptor; HET:
NAG; 3.50A {Homo sapiens} PDB: 3se3_A*
Length = 414
Score = 78.1 bits (191), Expect = 3e-17
Identities = 35/202 (17%), Positives = 65/202 (32%), Gaps = 10/202 (4%)
Query: 3 EWKSQNSGTEQWAVLQDLLPATLYRVRVLAENSLG--AGRPSDPLLVHTEAEPPTAEPSG 60
+ + + L P T Y ++V A G S + T E P
Sbjct: 153 GVEERIENIYSRHKIYKLSPETTYCLKVKAALLTSWKIGVYSPVHCIKTTVENELPPPEN 212
Query: 61 LHAVAISSDSIRVTWSPPPAHLTNGDLLGYYLGYREQGFGRQNSYNFTTIPNRSDGAG-- 118
+ + + + + W A++T + + + ++ G + Y + IP+ +
Sbjct: 213 IEVSVQNQNYV-LKWDYTYANMTFQ--VQWLHAFLKRNPGN-HLYKWKQIPDCENVKTTQ 268
Query: 119 VATLTGLRKYRKYDIVVQAFNEKGPGPMSSEVSVQTLEDVPAAPPLDITCSALSSTSLSV 178
+ + Y + VQA + S E+ T PP +L S S +
Sbjct: 269 CVFPQNVFQKGIYLLRVQASDGNNTSFWSEEIKFDTEIQAFLLPP-VFNIRSL-SDSFHI 326
Query: 179 TWQPPPLLLQNGEILGYKVYYE 200
P I Y + YE
Sbjct: 327 YIGAPKQSGNTPVIQDYPLIYE 348
Score = 73.5 bits (179), Expect = 1e-15
Identities = 28/158 (17%), Positives = 51/158 (32%), Gaps = 10/158 (6%)
Query: 7 QNSGTEQWAVLQDLLPATLYRVRVLAENSLGAGRPSDPLLVHTEAEPPTAEPSGLHAVAI 66
+N T Q Q++ +Y +RV A + S+ + TE + P +
Sbjct: 262 ENVKTTQCVFPQNVFQKGIYLLRVQASDGNNTSFWSEEIKFDTEIQAFLLPPV--FNIRS 319
Query: 67 SSDSIRVTWSPPPAHLTNGDLLGYYLGYREQGFGRQNSYNFTTIPNRSDGAGVATLTGLR 126
SDS + P + Y L Y + ++ I ++D T+ L+
Sbjct: 320 LSDSFHIYIGAPKQSGNTPVIQDYPLIYEIIFWENTSNAERKIIEKKTD----VTVPNLK 375
Query: 127 KYRKYDIVVQAFNEKG----PGPMSSEVSVQTLEDVPA 160
Y + +A S V +T +
Sbjct: 376 PLTVYCVKARAHTMDEKLNKSSVFSDAVCEKTKPGNTS 413
Score = 55.0 bits (131), Expect = 2e-09
Identities = 28/209 (13%), Positives = 53/209 (25%), Gaps = 18/209 (8%)
Query: 1 DVEWKSQNSGTEQWAVLQDLLPATLYRVRVLAEN---SLGAGRPSDPLLVHTEAEPPTAE 57
+ + T+ L ++R+ AE S S + PP
Sbjct: 53 KLSGCQNITSTKCNFSSLKLNVYEEIKLRIRAEKENTSSWYEVDSFTPFRKAQIGPPEVH 112
Query: 58 PSGLHAVAISSDSIRVTWSPPPAHLTNGDLLGYYLGYREQGFGRQNSYNFTTIPNRSDGA 117
+ +I + SP L G Y + + S
Sbjct: 113 ------LEAEDKAIVIHISPGTKDSVMWALDGLSFTYSLVIWKNSSGVEERIENIYSR-- 164
Query: 118 GVATLTGLRKYRKYDIVVQAFNEKG--PGPMSSEVSVQTLEDVPAAPPLDITCSALSSTS 175
+ L Y + V+A G S ++T + PP +I S +
Sbjct: 165 --HKIYKLSPETTYCLKVKAALLTSWKIGVYSPVHCIKTTVENELPPPENIEVSVQNQNY 222
Query: 176 LSVTWQPPPLLLQNGEILGYKVYYENMRE 204
+ + W + + +
Sbjct: 223 V-LKWDYTY--ANMTFQVQWLHAFLKRNP 248
Score = 49.6 bits (117), Expect = 2e-07
Identities = 21/150 (14%), Positives = 41/150 (27%), Gaps = 9/150 (6%)
Query: 51 AEPPTAEPSGLHAVAISSDSIRVTWSPPPAHLTNGDLLGYYLGYREQGFGRQNSYNFTTI 110
P + I + I + W+ + N + + Y Q G N +
Sbjct: 4 GSKNLKSPQKVEVDIIDDNFI-LRWNRSDESVGN---VTFSFDY--QKTGMDNWIKLSGC 57
Query: 111 PNRSDGAGVATLTGLRKYRKYDIVVQAFNEKGPGPMSSEVSVQTLEDVPAAPPLDITCSA 170
N + + L Y + + ++A E S PP ++ A
Sbjct: 58 QNITSTKCNFSSLKLNVYEEIKLRIRAEKE-NTSSWYEVDSFTPFRKAQIGPP-EVHLEA 115
Query: 171 LSSTSLSVTWQPPPLLLQNGEILGYKVYYE 200
++ + P + G Y
Sbjct: 116 -EDKAIVIHISPGTKDSVMWALDGLSFTYS 144
Score = 30.7 bits (68), Expect = 0.32
Identities = 9/55 (16%), Positives = 19/55 (34%), Gaps = 4/55 (7%)
Query: 5 KSQNSGTEQWAVLQDLLPATLYRVRVLAENSLGA----GRPSDPLLVHTEAEPPT 55
+ + + + +L P T+Y V+ A SD + T+ +
Sbjct: 359 ERKIIEKKTDVTVPNLKPLTVYCVKARAHTMDEKLNKSSVFSDAVCEKTKPGNTS 413
>3bpo_C Interleukin-13 receptor alpha-1 chain; IL4, IL13, IL4R, IL13R,
cytokine, glycoprotein, IM response, membrane,
phosphoprotein, secreted; HET: NAG; 3.00A {Homo sapiens}
PDB: 3bpn_C*
Length = 314
Score = 75.3 bits (184), Expect = 2e-16
Identities = 28/205 (13%), Positives = 61/205 (29%), Gaps = 11/205 (5%)
Query: 3 EWKSQNSGTEQWAVLQDLLPATLYRVRVLAENSLG--AGRPSDPLLVHTEAEPPTAEPSG 60
+ + + + ++ L +V + + + E +P +A +
Sbjct: 45 KQDKKIAPETRRSIEVPLNERICLQVGSQCSTNESEKPSILVEKCISPPEGDPESA-VTE 103
Query: 61 LHAVAISSDSIRVTWSPPPAHLTNGDLLGYYLGYREQGFGRQNSYNFTTIPNRSDGAGV- 119
L + + ++ +W P + Y L Y + + + + G
Sbjct: 104 LQCIWHNLSYMKCSWLPGRNTSPDT---NYTLYYWHRSLEKIHQCENIFREGQYFGCSFD 160
Query: 120 ATLTGLRKYRKYDIVVQAFNEKGPGPMSSEVSVQTLEDVPAAPPLDITCSALSSTSLSVT 179
T + ++ + + + G S V V PP S + L V
Sbjct: 161 LTKVKDSSFEQHSVQIMVKDNAGKI-KPSFNIVPLTSRVKPDPPHIKNLS-FHNDDLYVQ 218
Query: 180 WQPPPLLLQNGEILGYKVYYENMRE 204
W+ P L Y+V N +
Sbjct: 219 WENPQNF--ISRCLFYEVEVNNSQT 241
Score = 67.2 bits (163), Expect = 1e-13
Identities = 25/154 (16%), Positives = 46/154 (29%), Gaps = 19/154 (12%)
Query: 49 TEAEPPTAEPSGLHAVAISSDSIRVTWSPPPAHLTNGDLLGYYLGYREQGFGRQNSYNFT 108
TE +PP + L + ++ TW+PP G L Y +Q+
Sbjct: 1 TETQPP---VTNLSVSVENLCTVIWTWNPPE-----GASSNCSLWYFSHFGDKQDKKIAP 52
Query: 109 TIPNRSDGAGVATLTGLRKYRKYDIVVQAFNEKGPGPMS-SEVSVQTLEDVPAAPPLDIT 167
L + + Q + P E + E P + ++
Sbjct: 53 ETRRS-------IEVPLNERICLQVGSQCSTNESEKPSILVEKCISPPEGDPESAVTELQ 105
Query: 168 CSALSSTSLSVTWQPPPLLLQNGEILGYKVYYEN 201
C + + + +W P Y +YY +
Sbjct: 106 CIWHNLSYMKCSWLPGR---NTSPDTNYTLYYWH 136
Score = 37.2 bits (85), Expect = 0.002
Identities = 9/46 (19%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Query: 159 PAAPPLDITCSALSSTSLSVTWQPPPLLLQNGEILGYKVYYENMRE 204
P +++ S + ++ TW PP N L Y ++ + ++
Sbjct: 3 TQPPVTNLSVSVENLCTVIWTWNPPEGASSNC-SLWYFSHFGDKQD 47
>1wis_A KIAA1514 protein; FNIII domain, sidekick-2, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 124
Score = 70.8 bits (174), Expect = 3e-16
Identities = 21/126 (16%), Positives = 41/126 (32%), Gaps = 4/126 (3%)
Query: 37 GAGRPSDPLLVHTEAEPPTAEPSGLHAVAISSDSIRVTWSPPPAHLTNGDLLGYYLGYRE 96
G+ S + E P P+ L I S+ + + P + + + +
Sbjct: 1 GSSGSSGTISSGVPPELPGP-PTNLGISNIGPRSVTLQFRPGYDG--KTSISRWLVEAQV 57
Query: 97 QGFGRQNSYNFTTIPNRSDGAGVATLTGLRKYRKYDIVVQAFNEKGPGPMSSEV-SVQTL 155
G + + A + L + Y ++ N G P S +QTL
Sbjct: 58 GVVGEGEEWLLIHQLSNEPDARSMEVPDLNPFTCYSFRMRQVNIVGTSPPSQPSRKIQTL 117
Query: 156 EDVPAA 161
+ P++
Sbjct: 118 QSGPSS 123
Score = 48.5 bits (116), Expect = 7e-08
Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Query: 8 NSGTEQWAVLQDLLPATLYRVRVLAENSLGAGRPSDP-LLVHTEAEPPTA 56
N + + DL P T Y R+ N +G PS P + T P++
Sbjct: 74 NEPDARSMEVPDLNPFTCYSFRMRQVNIVGTSPPSQPSRKIQTLQSGPSS 123
Score = 41.2 bits (97), Expect = 3e-05
Identities = 11/59 (18%), Positives = 24/59 (40%), Gaps = 3/59 (5%)
Query: 142 GPGPMSSEVSVQTLEDVPAAPPLDITCSALSSTSLSVTWQPPPLLLQNGEILGYKVYYE 200
G S +S ++P PP ++ S + S+++ ++P I + V +
Sbjct: 1 GSSGSSGTISSGVPPELPG-PPTNLGISNIGPRSVTLQFRPGY--DGKTSISRWLVEAQ 56
>3qht_C Monobody YSMB-1; fibronectin type III, yeast small ubiquitin-like
modifier, S NOVO protein; 2.40A {Artificial gene}
Length = 97
Score = 68.6 bits (168), Expect = 1e-15
Identities = 24/102 (23%), Positives = 38/102 (37%), Gaps = 11/102 (10%)
Query: 54 PTAEPSGLHAVAISSDSIRVTWSPPPAHLTNGDLLGYYLGYREQGFGRQNSYNFTTIPNR 113
++ P+ L VA + S+ ++W + Y + Y E G G FT +
Sbjct: 4 VSSVPTKLEVVAATPTSLLISWDASS-----SSVSYYRITYGETG-GNSPVQEFTVPGSS 57
Query: 114 SDGAGVATLTGLRKYRKYDIVVQAFNEKGPGPMSSE-VSVQT 154
S AT++GL Y I V A+ S S+
Sbjct: 58 ST----ATISGLSPGVDYTITVYAYYSYYDLYYSYSPSSINY 95
Score = 45.5 bits (108), Expect = 4e-07
Identities = 8/41 (19%), Positives = 17/41 (41%), Gaps = 5/41 (12%)
Query: 159 PAAPPLDITCSALSSTSLSVTWQPPPLLLQNGEILGYKVYY 199
++ P + A + TSL ++W + Y++ Y
Sbjct: 4 VSSVPTKLEVVAATPTSLLISWDASS-----SSVSYYRITY 39
Score = 34.7 bits (80), Expect = 0.004
Identities = 9/34 (26%), Positives = 12/34 (35%)
Query: 9 SGTEQWAVLQDLLPATLYRVRVLAENSLGAGRPS 42
G+ A + L P Y + V A S S
Sbjct: 54 PGSSSTATISGLSPGVDYTITVYAYYSYYDLYYS 87
>2q7n_A Leukemia inhibitory factor receptor; cytokine cell surface receptor
complex LIFR LIF, cytokine RE cytokine complex; HET: NAG
FUC MAN; 4.00A {Mus musculus}
Length = 488
Score = 71.9 bits (175), Expect = 4e-15
Identities = 27/154 (17%), Positives = 44/154 (28%), Gaps = 10/154 (6%)
Query: 47 VHTEAEPPTAEPSGLHAVAISSDSIRVTWSPP-PAHLTNGDLLGYYLGYREQGFGRQNSY 105
V PP P L I +W+P L Y L G S
Sbjct: 280 VVFAGYPP-DVPQKLSCETHDLKEIICSWNPGRITGLVGPRNTEYTLFESISG----KSA 334
Query: 106 NFTTIPNRSDGAGVATLTGLRKYRKYDIVVQAFNEKGPGPMSSEVSVQTLEDVPAAPPLD 165
F I ++ + ++ + N G S V + E V P
Sbjct: 335 VFHRIEGLTNETYRLGVQMHPGQEIHNFTLTGRNPLGQA--QSAVVINVTERVAPHDPTS 392
Query: 166 ITCSALSSTSLSVTWQPPPLLLQNGEILGYKVYY 199
+ ++ST ++ +W P L ++
Sbjct: 393 LKVKDINSTVVTFSWYLPGNF--TKINLLCQIEI 424
Score = 69.2 bits (168), Expect = 4e-14
Identities = 22/156 (14%), Positives = 42/156 (26%), Gaps = 8/156 (5%)
Query: 3 EWKSQNSGTEQWAVLQDLLPATLYRVRVLAENSLGAGRPSDPLLVHTEAEPPTAEPSGLH 62
+ +Q ++ + N LG + ++++ +P+ L
Sbjct: 337 HRIEGLTNETYRLGVQMHPGQEIHNFTLTGRNPLG--QAQSAVVINVTERVAPHDPTSLK 394
Query: 63 AVAISSDSIRVTWSPPPAHLTNGDLLGYYLGYREQGFGRQNSYNFTTIPNRSDGAGVATL 122
I+S + +W P L + + + TI D +
Sbjct: 395 VKDINSTVVTFSWYLPGN--FTKINLLCQIEICKA--NSKKEVRNATIRGAEDSTYHVAV 450
Query: 123 TGLRKYRKYDIVVQA-FNEKGP-GPMSSEVSVQTLE 156
L Y Y V+ S E T E
Sbjct: 451 DKLNPYTAYTFRVRCSSKTFWKWSRWSDEKRHLTTE 486
Score = 35.3 bits (80), Expect = 0.012
Identities = 18/145 (12%), Positives = 37/145 (25%), Gaps = 20/145 (13%)
Query: 56 AEPSGLHAVAISSDSIRVTWSPPPAHLTNGDLLGYYLGYREQGFGRQNSYNFTTIPNRSD 115
+ L + TW P + + IP S
Sbjct: 5 DDDKDLKCTTNNMRVWDCTWPAPLG--VSPGTVKDICIKDRFHSCHPLETTNVKIPALSP 62
Query: 116 GAGVATLTGLRKYRKYDIVVQAFNEKGPGPMSSEVSVQTLEDVPAAPPLDITCSALSSTS 175
G +++ + N ++ + + +P P + SA TS
Sbjct: 63 G-------------DHEVTINYLNGFQS---KFTLNEKDVSLIP-ETPEILDLSADFFTS 105
Query: 176 -LSVTWQPPPLLLQNGEILGYKVYY 199
L + W L + +++
Sbjct: 106 SLLLKWNDRGSALPHPSNATWEIKV 130
Score = 29.2 bits (64), Expect = 1.1
Identities = 7/46 (15%), Positives = 13/46 (28%), Gaps = 3/46 (6%)
Query: 157 DVPAAPPLDITCSALSSTSLSVTWQPPPLLLQNGEILGYKVYYENM 202
D D+ C+ + TW P L + ++
Sbjct: 1 DYKDDDDKDLKCTTNNMRVWDCTWPAP---LGVSPGTVKDICIKDR 43
>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine,
ligand-receptor complex, signaling protein-cytokin; HET:
NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1
Length = 313
Score = 70.3 bits (171), Expect = 1e-14
Identities = 27/153 (17%), Positives = 48/153 (31%), Gaps = 16/153 (10%)
Query: 17 LQDLLPATLYRVRVLAENSLGAGRPSDPLLVHTEAEPPTAEPSGLHAVAI------SSDS 70
+ LL + V AEN+LG S L + P +
Sbjct: 166 RKHLLLYQNMGIWVQAENALGTSM-SPQLCLDPMDVVKLEPPMLRTMDPSPEAAPPQAGC 224
Query: 71 IRVTWSPPPAHLTNGDLLGYYLGYREQGFGRQNSYNFTTIPNRSDGAGVATLTGLRKYRK 130
++++W P L L ++ Q + ++ + A L GL
Sbjct: 225 LQLSWEPWQPGLHIN--QKCELRHKPQ----RGEASWALVGPLPLEALQYELCGLLPATA 278
Query: 131 YDIVVQAFNEKGPGPM---SSEVSVQTLEDVPA 160
Y + ++ PG S + ++T E A
Sbjct: 279 YTLQIRCIRWPLPGHWSDWSPSLELRTTERAAA 311
Score = 47.2 bits (111), Expect = 9e-07
Identities = 28/160 (17%), Positives = 52/160 (32%), Gaps = 11/160 (6%)
Query: 47 VHTEAEPPTAEPSGLHAVA-ISSDSIRVTWSPPPAHLTNGDLLGYYLGYREQGFGRQNSY 105
V A P A P L + +++ S+ W P P R + +S
Sbjct: 91 VELRAGYPPAIPHNLSCLMNLTTSSLICQWEPGPETHLPTSFTLKSFKSRGNCQTQGDSI 150
Query: 106 NFTTIPNRSDGAGVATLTGLRKYRKYDIVVQAFNEKGPGPMSSEVSVQTLEDVPAAPPLD 165
+ + L Y+ I VQA N G S ++ + ++ V PP+
Sbjct: 151 LDCVPKDGQSHCSI-PRKHLLLYQNMGIWVQAENALGTSM-SPQLCLDPMDVVKLEPPML 208
Query: 166 IT------CSALSSTSLSVTWQPPPLLLQNGEILGYKVYY 199
T + + L ++W+P ++ +
Sbjct: 209 RTMDPSPEAAPPQAGCLQLSWEPWQP--GLHINQKCELRH 246
Score = 34.5 bits (78), Expect = 0.016
Identities = 12/56 (21%), Positives = 16/56 (28%), Gaps = 3/56 (5%)
Query: 3 EWKSQNSGTEQWAVLQDLLPATLYRVRVLAENSLGAGRPSD---PLLVHTEAEPPT 55
L LLPAT Y +++ G SD L + T
Sbjct: 256 ALVGPLPLEALQYELCGLLPATAYTLQIRCIRWPLPGHWSDWSPSLELRTTERAAA 311
>1x3d_A Fibronectin type-III domain containing protein 3A; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 118
Score = 65.9 bits (161), Expect = 2e-14
Identities = 22/127 (17%), Positives = 39/127 (30%), Gaps = 12/127 (9%)
Query: 37 GAGRPSDPLLVHTEAEPPTAEPSGLHAVAISSDSIRVTWSPPPAHLTNGDLLGYYLGYRE 96
G+ S + T + P P+ + +S+ + W P + + + L + E
Sbjct: 1 GSSGSSGAEIFTTLSCEPDI-PNPPRIANRTKNSLTLQWKAPSDN--GSKIQNFVLEWDE 57
Query: 97 QGFGRQNSYNFTTIPNRSDGAGVATLTGLRKYRKYDIVVQAFNEKGPGPMSSEVSVQTLE 156
G G + +T L + A N+ G S EV T
Sbjct: 58 -GKGNGEFCQCYMGSQKQ-----FKITKLSPAMGCKFRLSARNDYGTSGFSEEVLYYT-- 109
Query: 157 DVPAAPP 163
+ P
Sbjct: 110 -SGCSGP 115
Score = 50.1 bits (120), Expect = 2e-08
Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 3 EWKSQNSGTEQWAVLQDLLPATLYRVRVLAENSLGAGRPSDPLLVHTEAE-PPTA 56
E+ G+++ + L PA + R+ A N G S+ +L +T P++
Sbjct: 63 EFCQCYMGSQKQFKITKLSPAMGCKFRLSARNDYGTSGFSEEVLYYTSGCSGPSS 117
Score = 40.8 bits (96), Expect = 3e-05
Identities = 11/59 (18%), Positives = 21/59 (35%), Gaps = 3/59 (5%)
Query: 142 GPGPMSSEVSVQTLEDVPAAPPLDITCSALSSTSLSVTWQPPPLLLQNGEILGYKVYYE 200
G S TL P P + + SL++ W+ P +I + + ++
Sbjct: 1 GSSGSSGAEIFTTLSCEPD-IPNPPRIANRTKNSLTLQWKAPS--DNGSKIQNFVLEWD 56
>2ekj_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 105
Score = 65.2 bits (159), Expect = 3e-14
Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 13/115 (11%)
Query: 49 TEAEPPTAEPSGLHAVAISSDSIRVTWSPPPAHLTNGDLLGYYLGYREQGFGRQNSYNFT 108
+ + PS L + + DS++V+W+PP G +L Y+L Y
Sbjct: 2 SSGSSGRSPPSNLALASETPDSLQVSWTPP-----LGRVLHYWLTYAPA--SGLGPEKSV 54
Query: 109 TIPNRSDGAGVATLTGLRKYRKYDIVVQAFNEKGPGPMSSEVSVQTLEDVPAAPP 163
++P TL L+ KY ++V A G + + QT P+ P
Sbjct: 55 SVPGARS---HVTLPDLQAATKYRVLVSAIYAAGRSE-AVSATGQTA--CPSGPS 103
Score = 44.4 bits (105), Expect = 2e-06
Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
Query: 159 PAAPPLDITCSALSSTSLSVTWQPPPLLLQNGEILGYKVYYE 200
+PP ++ ++ + SL V+W PP G +L Y + Y
Sbjct: 7 GRSPPSNLALASETPDSLQVSWTPP-----LGRVLHYWLTYA 43
Score = 39.0 bits (91), Expect = 1e-04
Identities = 15/52 (28%), Positives = 18/52 (34%), Gaps = 3/52 (5%)
Query: 9 SGTEQWAVLQDLLPATLYRVRVLAENSLGAGRPSDPLLVHTEAEPPTAEPSG 60
G L DL AT YRV V A + G + P+ SG
Sbjct: 57 PGARSHVTLPDLQAATKYRVLVSAIYAAGRSEAVS---ATGQTACPSGPSSG 105
>3s98_A Interferon alpha/beta receptor 1; human, type I interferons,
receptor chain, ifnar1, fibronect III, type I interferon
receptor chain; HET: NAG; 1.90A {Homo sapiens}
Length = 306
Score = 69.2 bits (168), Expect = 3e-14
Identities = 27/206 (13%), Positives = 54/206 (26%), Gaps = 26/206 (12%)
Query: 1 DVEWKSQNSGTEQWAVLQDLLPATLYRVRVLAENSLGAGRPSDPLLVHT-EAEPPTAEPS 59
+ + T+ L ++R+ AE S V +
Sbjct: 49 KLSGCQNITSTKCNFSSLKLNVYEEIKLRIRAEK----ENTSSWYEVDSFTPFRKAQIGP 104
Query: 60 GLHAVAISSDSIRVTWSPP----PAHLTNGDLLGYYLGYREQGFGRQNSYNFTTIPNRSD 115
+ +I + SP +G Y L + G +
Sbjct: 105 PEVHLEAEDKAIVIHISPGTKDSVMWALDGLSFTYSLVIWKNSSGVEERIENIY------ 158
Query: 116 GAGVATLTGLRKYRKYDIVVQAFNEKGP--GPMSSEVSVQTLEDVPAAPPLDITCSALSS 173
+ L Y + V+A G S ++T + PP +I S +
Sbjct: 159 --SRHKIYKLSPETTYCLKVKAALLTSWKIGVYSPVHCIKTTVENELPPPENIEVSV-QN 215
Query: 174 TSLSVTWQPPPLLLQNGEILGYKVYY 199
+ + W + ++V +
Sbjct: 216 QNYVLKWDYTY------ANMTFQVQW 235
Score = 54.5 bits (130), Expect = 3e-09
Identities = 21/150 (14%), Positives = 45/150 (30%), Gaps = 13/150 (8%)
Query: 54 PTAEPSGLHAVAISSDSIRVTWSPPPAHLTNGDLLGYYLGYREQGFGRQNSYNFTTIPNR 113
P P + I + I + W+ + N + + Y++ G N + N
Sbjct: 3 PLKSPQKVEVDIIDDNFI-LRWNRSDESVGN---VTFSFDYQK--TGMDNWIKLSGCQNI 56
Query: 114 SDGAGVATLTGLRKYRKYDIVVQAFNEKGPGPMSSEVSVQTLEDVPAAPPLDITCSALSS 173
+ + L Y + + ++A E S PP ++ A
Sbjct: 57 TSTKCNFSSLKLNVYEEIKLRIRAEKE-NTSSWYEVDSFTPFRKAQIGPP-EVHLEA-ED 113
Query: 174 TSLSVTWQPP----PLLLQNGEILGYKVYY 199
++ + P + +G Y +
Sbjct: 114 KAIVIHISPGTKDSVMWALDGLSFTYSLVI 143
Score = 29.9 bits (66), Expect = 0.47
Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 4/54 (7%)
Query: 3 EWKS----QNSGTEQWAVLQDLLPATLYRVRVLAENSLGAGRPSDPLLVHTEAE 52
+WK +N T Q Q++ +Y +RV A + S+ + TE +
Sbjct: 250 KWKQIPDCENVKTTQCVFPQNVFQKGIYLLRVQASDGNNTSFWSEEIKFDTEIQ 303
>2e3v_A Neural cell adhesion molecule 1, 140 kDa isoform; NCAM, N-CAM 1,
NCAM-120, CD56 antigen, membra protein, glycoprotein,
structural genomics, NPPSFA; HET: PGE BTB; 1.95A {Homo
sapiens}
Length = 122
Score = 65.2 bits (159), Expect = 4e-14
Identities = 29/120 (24%), Positives = 53/120 (44%), Gaps = 6/120 (5%)
Query: 49 TEAEPPTAEPSGLHAVAISSDSIRVTWSPPPAHLTNGDLLGYYLGYREQGFGRQNSYNFT 108
+ + P++ PS + V S + +V + P A +L Y +R G +S +
Sbjct: 3 SGSSGPSS-PS-IDQVEPYSSTAQVQFDEPEAT-GGVPILKYKAEWRAVGEEVWHSKWYD 59
Query: 109 TIPNRSDGAGVATLTGLRKYRKYDIVVQAFNEKGPGPMSSEVSVQTL-EDVPAAPPLDIT 167
+G + T+ GL+ Y + + A N KG G +S+ +T P+AP L+ +
Sbjct: 60 AKEASMEG--IVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQPVREPSAPKLEGS 117
Score = 44.8 bits (106), Expect = 2e-06
Identities = 17/60 (28%), Positives = 22/60 (36%), Gaps = 1/60 (1%)
Query: 9 SGTEQWAVLQDLLPATLYRVRVLAENSLGAGRPSDPLLVHTEAEPPTAEPSGLHAVAISS 68
+ E + L P T Y VR+ A N G G S T+ + P L SS
Sbjct: 63 ASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQPVREPSAPK-LEGSGPSS 121
Score = 35.9 bits (83), Expect = 0.002
Identities = 11/48 (22%), Positives = 18/48 (37%), Gaps = 7/48 (14%)
Query: 154 TLEDVPAAPPLDITCSALSSTSLSVTWQPPPLLLQNG--EILGYKVYY 199
+ P++P I S++ V + P G IL YK +
Sbjct: 3 SGSSGPSSP--SIDQVEPYSSTAQVQFDEPE---ATGGVPILKYKAEW 45
>2haz_A N-CAM 1, neural cell adhesion molecule 1; fibronectin type III
repeat, FN1, beta sandwich; 1.70A {Homo sapiens} SCOP:
b.1.2.1
Length = 105
Score = 64.3 bits (157), Expect = 5e-14
Identities = 23/107 (21%), Positives = 41/107 (38%), Gaps = 5/107 (4%)
Query: 49 TEAEPPTAEPSGLHAVAISSDSIRVTWSPPPAHLTNGDLLGYYLGYREQGFGRQNSYNFT 108
+ + P + V S + +V + P A +L Y +R G +S +
Sbjct: 2 SHMDTP--SSPSIDQVEPYSSTAQVQFDEPEAT-GGVPILKYKAEWRAVGEEVWHSKWYD 58
Query: 109 TIPNRSDGAGVATLTGLRKYRKYDIVVQAFNEKGPGPMSSEVSVQTL 155
+G T+ GL+ Y + + A N KG G +S+ +T
Sbjct: 59 AKEASMEGI--VTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQ 103
Score = 45.5 bits (108), Expect = 7e-07
Identities = 15/53 (28%), Positives = 20/53 (37%), Gaps = 5/53 (9%)
Query: 3 EWKSQN-----SGTEQWAVLQDLLPATLYRVRVLAENSLGAGRPSDPLLVHTE 50
W S+ + E + L P T Y VR+ A N G G S T+
Sbjct: 51 VWHSKWYDAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQ 103
Score = 36.6 bits (85), Expect = 0.001
Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 7/48 (14%)
Query: 154 TLEDVPAAPPLDITCSALSSTSLSVTWQPPPLLLQNG--EILGYKVYY 199
+ D P++P I S++ V + P G IL YK +
Sbjct: 2 SHMDTPSSP--SIDQVEPYSSTAQVQFDEPE---ATGGVPILKYKAEW 44
>3k2m_C Monobody HA4; engineered binding protein, antibody mimic,
protein-protein SH2 domain, ATP-binding, phosphoprotein;
1.75A {Homo sapiens} PDB: 3uyo_D 1ttf_A 1ttg_A 3rzw_A
1fna_A
Length = 101
Score = 64.4 bits (157), Expect = 5e-14
Identities = 28/99 (28%), Positives = 43/99 (43%), Gaps = 10/99 (10%)
Query: 58 PSGLHAVAISSDSIRVTWSPPPAHLTNGDLLGYYLGYREQGFGRQNSYNFTTIPNRSDGA 117
P+ L VA + S+ ++W P + + + Y + Y E G G FT + S
Sbjct: 8 PTKLEVVAATPTSLLISWDAPMS---SSSVYYYRITYGETG-GNSPVQEFTVPYSSST-- 61
Query: 118 GVATLTGLRKYRKYDIVVQAFNEKGPGP--MSSEVSVQT 154
AT++GL Y I V A+ E G M S +S+
Sbjct: 62 --ATISGLSPGVDYTITVYAWGEDSAGYMFMYSPISINY 98
Score = 45.5 bits (108), Expect = 5e-07
Identities = 9/39 (23%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Query: 161 APPLDITCSALSSTSLSVTWQPPPLLLQNGEILGYKVYY 199
+ P + A + TSL ++W P + + Y++ Y
Sbjct: 6 SVPTKLEVVAATPTSLLISWDAPM---SSSSVYYYRITY 41
Score = 37.1 bits (86), Expect = 5e-04
Identities = 8/43 (18%), Positives = 12/43 (27%)
Query: 9 SGTEQWAVLQDLLPATLYRVRVLAENSLGAGRPSDPLLVHTEA 51
+ A + L P Y + V A AG +
Sbjct: 56 PYSSSTATISGLSPGVDYTITVYAWGEDSAGYMFMYSPISINY 98
>3b83_A Ten-D3; beta sheet, computational redesigned protein, alternative
splicing, cell adhesion, coiled coil, EGF-like domain,
extracellular matrix; 2.40A {Homo sapiens}
Length = 100
Score = 63.9 bits (156), Expect = 7e-14
Identities = 20/97 (20%), Positives = 32/97 (32%), Gaps = 11/97 (11%)
Query: 58 PSGLHAVAISSDSIRVTWSPPPAHLTNGDLLGYYLGYREQGFGRQNSYNFTTIPNRSDGA 117
P + I+ + VTW PP + G + + + + T S
Sbjct: 5 PFNIKVTNITLTTAVVTWQPPILPIE-----GILVTFGRKNDPSDETTVDLTSSITS--- 56
Query: 118 GVATLTGLRKYRKYDIVVQAFNEKGPGPMSSEVSVQT 154
TLT L Y+I + A N + P + T
Sbjct: 57 --LTLTNLEPNTTYEIRIVARNGQQYSP-PVSTTFTT 90
Score = 41.6 bits (98), Expect = 1e-05
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 5/39 (12%)
Query: 162 PPLDITCSALSSTSLSVTWQPPPLLLQNGEILGYKVYYE 200
PP +I + ++ T+ VTWQPP I G V +
Sbjct: 4 PPFNIKVTNITLTTAVVTWQPPI-----LPIEGILVTFG 37
Score = 39.7 bits (93), Expect = 7e-05
Identities = 10/40 (25%), Positives = 16/40 (40%)
Query: 3 EWKSQNSGTEQWAVLQDLLPATLYRVRVLAENSLGAGRPS 42
E + + L +L P T Y +R++A N P
Sbjct: 45 ETTVDLTSSITSLTLTNLEPNTTYEIRIVARNGQQYSPPV 84
>1wk0_A KIAA0970 protein; fibronectin type III domain, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 137
Score = 65.0 bits (158), Expect = 7e-14
Identities = 26/134 (19%), Positives = 39/134 (29%), Gaps = 14/134 (10%)
Query: 37 GAGRPSDPLLVHTEAEPPTAEPSGLHAVAISSDSIRVTWSPPPAHLTNG-------DLLG 89
G+ S + A I + ++ +TWSPP + + +L G
Sbjct: 1 GSSGSSGDEETKAFEALLSN-IVKPVASDIQARTVVLTWSPPSSLINGETDESSVPELYG 59
Query: 90 YYLGYREQGFGRQNSYNFTTIPNRSDGAGVATLTGLRKYRKYDIVVQAFNEKGPGPMSSE 149
Y + G + + TL L+ Y VQA G S
Sbjct: 60 YEVLISSTGKDGKYKSVYVGEETN------ITLNDLKPAMDYHAKVQAEYNSIKGTPSEA 113
Query: 150 VSVQTLEDVPAAPP 163
TL P P
Sbjct: 114 EIFTTLSCEPDIPN 127
Score = 50.0 bits (119), Expect = 2e-08
Identities = 19/56 (33%), Positives = 26/56 (46%)
Query: 1 DVEWKSQNSGTEQWAVLQDLLPATLYRVRVLAENSLGAGRPSDPLLVHTEAEPPTA 56
D ++KS G E L DL PA Y +V AE + G PS+ + T + P
Sbjct: 70 DGKYKSVYVGEETNITLNDLKPAMDYHAKVQAEYNSIKGTPSEAEIFTTLSCEPDI 125
Score = 43.1 bits (101), Expect = 9e-06
Identities = 13/67 (19%), Positives = 26/67 (38%), Gaps = 8/67 (11%)
Query: 142 GPGPMSSEVSVQTLEDVPAAPPLDITCSALSSTSLSVTWQPPPLLLQNG-------EILG 194
G S + + E + + S + + ++ +TW PP L+ E+ G
Sbjct: 1 GSSGSSGDEETKAFEALLSNIV-KPVASDIQARTVVLTWSPPSSLINGETDESSVPELYG 59
Query: 195 YKVYYEN 201
Y+V +
Sbjct: 60 YEVLISS 66
>2dju_A Receptor-type tyrosine-protein phosphatase F; LAR protein,
leukocyte antigen related, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 106
Score = 63.5 bits (155), Expect = 1e-13
Identities = 24/116 (20%), Positives = 40/116 (34%), Gaps = 13/116 (11%)
Query: 48 HTEAEPPTAEPSGLHAVAISSDSIRVTWSPPPAHLTNGDLLGYYLGYREQGFGRQNSYNF 107
+ + P P L ++ S+ +TW + + Y + YR G
Sbjct: 2 SSGSSGPKP-PIDLVVTETTATSVTLTWDSGN----SEPVTYYGIQYRAAG-TEGPFQEV 55
Query: 108 TTIPNRSDGAGVATLTGLRKYRKYDIVVQAFNEKGPGPMSSEVSVQTLEDVPAAPP 163
+ ++ GL + +Y V A N G GP S V +T E + P
Sbjct: 56 DGVATTR-----YSIGGLSPFSEYAFRVLAVNSIGRGPPSEAVRARTGE--QSGPS 104
Score = 48.5 bits (116), Expect = 5e-08
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 4 WKSQNSGTEQWAVLQDLLPATLYRVRVLAENSLGAGRPSDPLLVHT--EAEPPTA 56
++ + + L P + Y RVLA NS+G G PS+ + T ++ P +
Sbjct: 52 FQEVDGVATTRYSIGGLSPFSEYAFRVLAVNSIGRGPPSEAVRARTGEQSGPSSG 106
Score = 38.8 bits (91), Expect = 2e-04
Identities = 10/48 (20%), Positives = 22/48 (45%), Gaps = 5/48 (10%)
Query: 153 QTLEDVPAAPPLDITCSALSSTSLSVTWQPPPLLLQNGEILGYKVYYE 200
+ P PP+D+ + ++TS+++TW + + Y + Y
Sbjct: 2 SSGSSGPK-PPIDLVVTETTATSVTLTWDSGN----SEPVTYYGIQYR 44
>2gys_A Cytokine receptor common beta chain; dimer of interlocking chains
of fibronectin-III domains, FOU fibronectin-III domains
PER chain; HET: NAG FUC BMA NDG; 2.70A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1gh7_A*
3cxe_A* 1egj_A* 1c8p_A
Length = 419
Score = 67.7 bits (164), Expect = 1e-13
Identities = 29/212 (13%), Positives = 66/212 (31%), Gaps = 26/212 (12%)
Query: 3 EWKSQNSGTEQ-WAVLQDLLPATLYRVRVLAENSLGAGRPSDP-----LLVHTEAEPPTA 56
+ S T Q + L+P++ Y RV + G+ P + A
Sbjct: 160 DAAILLSNTSQATLGPEHLMPSSTYVARVRTRLAPGSRLSGRPSKWSPEVCWDSQPGDEA 219
Query: 57 EPSGLHAVAISSDSIRVTWSPPPAHLTNGDLLGYYLGYREQGFGRQNSYNFTTIPNRSDG 116
+P L + + +W + + L Y+ +
Sbjct: 220 QPQNLECFFDGAAVLSCSWEVRK---EVASSVSFGLFYKPSPDAGSAVLL-----REEEC 271
Query: 117 AGVATLTGLRKYRKYDIVVQAFNEKGPG-------PMSSEVSVQTLEDVPAAPP-LDITC 168
+ V + ++ + + G P +E +++ ++ APP L +T
Sbjct: 272 SPVLREGLGSLHTRHHCQIPVPDPATHGQYIVSVQPRRAEKHIKSSVNIQMAPPSLQVTK 331
Query: 169 SALSSTSLSVTWQPPPLLLQNGEILGYKVYYE 200
S S+ W+ + ++ +++ Y
Sbjct: 332 ---DGDSYSLRWETMKMRYEHI-DHTFEIQYR 359
Score = 56.9 bits (136), Expect = 6e-10
Identities = 31/186 (16%), Positives = 55/186 (29%), Gaps = 10/186 (5%)
Query: 20 LLPATLYRVRVLAENSLGAGRP-SDPLLVHTEAEPPTAEPSGLHAVAISSDSIRVTWSPP 78
++P + V + S RP L V EP L ++ D +TWS
Sbjct: 73 VIPCQSFVVTDVDYFSFQPDRPLGTRLTVTLTQHVQPPEPRDLQ-ISTDQDHFLLTWSVA 131
Query: 79 PAHLTNGDLLGYYLGYREQGFGRQNSYNFTTIPNRSDGAGVATLTGLRKYRKYDIVVQAF 138
+ L L + Q+S+ I + L Y V+
Sbjct: 132 LGSPQSHWLSPGDLEFEVVYKRLQDSWEDAAILLSNTSQATLGPEHLMPSSTYVARVRTR 191
Query: 139 NEKGPGPMS-----SEVSVQTLEDVPAAPPLDITCSALSSTSLSVTWQPPPLLLQNGEIL 193
G S + A P ++ C + LS +W+ + +
Sbjct: 192 LAPGSRLSGRPSKWSPEVCWDSQPGDEAQPQNLECFFDGAAVLSCSWEVRK---EVASSV 248
Query: 194 GYKVYY 199
+ ++Y
Sbjct: 249 SFGLFY 254
Score = 50.4 bits (119), Expect = 1e-07
Identities = 15/148 (10%), Positives = 39/148 (26%), Gaps = 2/148 (1%)
Query: 54 PTAEPSGLHAVAISSDSIRVTWSPPPAHLTNGDLLGYYLGYREQGFGRQNSYNFTTIPNR 113
T L + I W+ ++ + + +
Sbjct: 2 ETIPLQTLRCYNDYTSHITCRWADTQDAQRLVNVTLIRRVNEDLLEPVSCDLSDDMPWSA 61
Query: 114 SDGAGVATLTGLRKYRKYDIVVQA-FNEKGPGPMSSEVSVQTLEDVPAAPPLDITCSALS 172
+ + + + F+ + P+ + ++V + V P D+ S
Sbjct: 62 CPHPRCVPRRCVIPCQSFVVTDVDYFSFQPDRPLGTRLTVTLTQHVQPPEPRDLQIST-D 120
Query: 173 STSLSVTWQPPPLLLQNGEILGYKVYYE 200
+TW Q+ + + +E
Sbjct: 121 QDHFLLTWSVALGSPQSHWLSPGDLEFE 148
Score = 35.0 bits (79), Expect = 0.014
Identities = 12/53 (22%), Positives = 17/53 (32%), Gaps = 5/53 (9%)
Query: 3 EWKSQNSGTEQWAVLQDLLPATLYRVRVLAENSLGAGR-----PSDPLLVHTE 50
+ K++ L L P+T Y RV S S+ TE
Sbjct: 367 DSKTETLQNAHSMALPALEPSTRYWARVRVRTSRTGYNGIWSEWSEARSWDTE 419
>2rb8_A Tenascin; beta sheet,loop design, alternative splicing, cell
adhesion, coiled coil, EGF-like domain, extracellular
matrix, glycoprotein; 1.45A {Homo sapiens} PDB: 2rbl_A
1ten_A
Length = 104
Score = 62.8 bits (153), Expect = 2e-13
Identities = 13/106 (12%), Positives = 33/106 (31%), Gaps = 11/106 (10%)
Query: 58 PSGLHAVAISSDSIRVTWSPPPAHLTNGDLLGYYLGYREQGFGRQNSYNFTTIPNRSDGA 117
PS + ++ + +TW PP + G+ L Y + + T
Sbjct: 6 PSQIEVKDVTDTTALITWMPPSQPVD-----GFELTYGIKDVPGDRTTIDLTEDENQ--- 57
Query: 118 GVATLTGLRKYRKYDIVVQAFNEKGPGPMSSEVSVQTLEDVPAAPP 163
++ L+ +Y++ + + ++ + T
Sbjct: 58 --YSIGNLKPDTEYEVSLISRRGDMSSN-PAKETFTTGLAAALEHH 100
Score = 41.2 bits (97), Expect = 2e-05
Identities = 9/39 (23%), Positives = 18/39 (46%), Gaps = 5/39 (12%)
Query: 162 PPLDITCSALSSTSLSVTWQPPPLLLQNGEILGYKVYYE 200
P I ++ T+ +TW PP + + G+++ Y
Sbjct: 5 APSQIEVKDVTDTTALITWMPP-----SQPVDGFELTYG 38
Score = 37.4 bits (87), Expect = 5e-04
Identities = 8/47 (17%), Positives = 16/47 (34%), Gaps = 1/47 (2%)
Query: 9 SGTEQWAVLQDLLPATLYRVRVLAENSLGAGRPSDPLLVHTEAEPPT 55
+ E + +L P T Y V +++ + P+ T
Sbjct: 52 TEDENQYSIGNLKPDTEYEVSLISRRGDMSSNPAKETFT-TGLAAAL 97
>2dkm_A Collagen alpha-1(XX) chain; FN3 domain, KIAA1510, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 104
Score = 62.5 bits (152), Expect = 3e-13
Identities = 17/112 (15%), Positives = 34/112 (30%), Gaps = 12/112 (10%)
Query: 49 TEAEPPTAEPSGLHAVAISSDSIRVTWSPPPAHLTNGDLLGYYLGYREQGFGRQNSYNFT 108
+ + P P L A++ ++ +TW P Y + +
Sbjct: 3 SGSSGPLPPPRALTLAAVTPRTVHLTWQPSA------GATHYLVRCSPASPKGEEEEREV 56
Query: 109 TIPNRSDGAGVATLTGLRKYRKYDIVVQAFNEKGPGPMSSEVSVQTLEDVPA 160
+ L GL R Y++ VQ+ + + +T P+
Sbjct: 57 QVGRPE-----VLLDGLEPGRDYEVSVQSLRGPEGSE-ARGIRARTPTSGPS 102
Score = 40.2 bits (94), Expect = 4e-05
Identities = 11/47 (23%), Positives = 19/47 (40%), Gaps = 6/47 (12%)
Query: 154 TLEDVPAAPPLDITCSALSSTSLSVTWQPPPLLLQNGEILGYKVYYE 200
+ P PP +T +A++ ++ +TWQP Y V
Sbjct: 3 SGSSGPLPPPRALTLAAVTPRTVHLTWQPSA------GATHYLVRCS 43
Score = 35.6 bits (82), Expect = 0.002
Identities = 8/47 (17%), Positives = 12/47 (25%), Gaps = 1/47 (2%)
Query: 9 SGTEQWAVLQDLLPATLYRVRVLAENSLGAGRPSDPLLVHTEAEPPT 55
+L L P Y V V + + T P+
Sbjct: 57 QVGRPEVLLDGLEPGRDYEVSVQSLRGPEGSEAR-GIRARTPTSGPS 102
>1uey_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, NG-CAM
related cell adhesion molecule, fibronectin type III
domain, structural genomics; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 127
Score = 62.8 bits (153), Expect = 4e-13
Identities = 24/131 (18%), Positives = 39/131 (29%), Gaps = 9/131 (6%)
Query: 37 GAGRPSDPLLVHTEAEPPTAEPSGLHAVAISSDSIRVTWSPPPAHLTNGDLLGYYLGYRE 96
G+ S P + P P L S++++W+P + N + + + Y +
Sbjct: 1 GSSGSSGPTPA-PVYDVPNP-PFDLELTDQLDKSVQLSWTPGDDN--NSPITKFIIEYED 56
Query: 97 QGFGRQNSYNFTTIPNRSDGAGVATLTGLRKYRKYDIVVQAFNEKGPGPMSSEVS-VQTL 155
++ T + G L Y Y V A N G S T
Sbjct: 57 AMHKPGLWHHQTEVS----GTQTTAQLNLSPYVNYSFRVMAVNSIGKSLPSEASEQYLTK 112
Query: 156 EDVPAAPPLDI 166
P P
Sbjct: 113 ASEPDKNPTSG 123
Score = 50.8 bits (122), Expect = 1e-08
Identities = 17/75 (22%), Positives = 27/75 (36%), Gaps = 12/75 (16%)
Query: 2 VEWKSQNSGTEQW-----------AVLQDLLPATLYRVRVLAENSLGAGRPSDP-LLVHT 49
+E++ W +L P Y RV+A NS+G PS+ T
Sbjct: 52 IEYEDAMHKPGLWHHQTEVSGTQTTAQLNLSPYVNYSFRVMAVNSIGKSLPSEASEQYLT 111
Query: 50 EAEPPTAEPSGLHAV 64
+A P P+ +
Sbjct: 112 KASEPDKNPTSGPSS 126
Score = 35.4 bits (82), Expect = 0.004
Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 5/61 (8%)
Query: 147 SSEVSVQTLEDVPAAPPLDITCSALSSTSLSVTWQPPPLLLQNG-EILGYKVYYENMREL 205
SS + + DVP PP D+ + S+ ++W P N I + + YE+
Sbjct: 5 SSGPTPAPVYDVPN-PPFDLELTDQLDKSVQLSWTPGD---DNNSPITKFIIEYEDAMHK 60
Query: 206 P 206
P
Sbjct: 61 P 61
>1x5x_A Fibronectin type-III domain containing protein 3A; structural
genomics, KIAA0970, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 109
Score = 62.0 bits (151), Expect = 4e-13
Identities = 24/115 (20%), Positives = 41/115 (35%), Gaps = 10/115 (8%)
Query: 49 TEAEPPTAEPSGLHAVAISSDSIRVTWSPPPAHLTNGDLLGYYLGYREQGFGRQNSYNFT 108
+ + P+ P+ + + WS P + + + + Y L E+ G
Sbjct: 3 SGSSGPSM-PASPVLTKAGITWLSLQWSKP-SGTPSDEGISYILEMEEETSGYG------ 54
Query: 109 TIPNRSDGAG-VATLTGLRKYRKYDIVVQAFNEKGPGPMSSEVSVQTLEDVPAAP 162
+ DG T+ LR+ KY V A+N +G S V T D +
Sbjct: 55 -FKPKYDGEDLAYTVKNLRRSTKYKFKVIAYNSEGKSNPSEVVEFTTCPDSGPSS 108
Score = 43.5 bits (103), Expect = 3e-06
Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 4 WKSQNSGTEQWAVLQDLLPATLYRVRVLAENSLGAGRPSDPLLVHTEAEPPTAEPSG 60
+K + G + +++L +T Y+ +V+A NS G PS+ + T + SG
Sbjct: 55 FKPKYDGEDLAYTVKNLRRSTKYKFKVIAYNSEGKSNPSEVVEFTTCPDSG--PSSG 109
Score = 33.9 bits (78), Expect = 0.009
Identities = 10/49 (20%), Positives = 16/49 (32%), Gaps = 6/49 (12%)
Query: 154 TLEDVPAAPPLDITCSALSSTSLSVTWQPPPLLLQNG--EILGYKVYYE 200
+ P+ P + T LS+ W P E + Y + E
Sbjct: 3 SGSSGPS-MPASPVLTKAGITWLSLQWSKPS---GTPSDEGISYILEME 47
>1wf5_A Sidekick 2 protein; FNIII domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 121
Score = 61.6 bits (150), Expect = 9e-13
Identities = 30/128 (23%), Positives = 42/128 (32%), Gaps = 10/128 (7%)
Query: 35 SLGAGRPSDPLLVHTEAEPPTAEPSGLHAVAISSDSIRVTWSPPPAHLTNGDLLGYYLGY 94
S G+ S L V P E + +I +TW+ P N L+ Y L
Sbjct: 2 SSGSSGRSAHLRVRQLPHAP--EHPVATLSTVERRAINLTWTKPFDG--NSPLIRYILEM 57
Query: 95 REQGFGRQNSYNFTTIPNRSDGAGVATLTGLRKYRKYDIVVQAFNEKGPGPMSSEVS-VQ 153
E S T+ GL R Y + A N+ G G S + V
Sbjct: 58 SENNAPWTVLLASVDPKATS-----VTVKGLVPARSYQFRLCAVNDVGKGQFSKDTERVS 112
Query: 154 TLEDVPAA 161
E P++
Sbjct: 113 LPESGPSS 120
Score = 49.3 bits (118), Expect = 3e-08
Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 9 SGTEQWAVLQDLLPATLYRVRVLAENSLGAGRPSDPL-LVHTEAEPPTA 56
++ L+PA Y+ R+ A N +G G+ S V P++
Sbjct: 72 DPKATSVTVKGLVPARSYQFRLCAVNDVGKGQFSKDTERVSLPESGPSS 120
Score = 35.4 bits (82), Expect = 0.003
Identities = 12/61 (19%), Positives = 24/61 (39%), Gaps = 8/61 (13%)
Query: 142 GPGPMSSEVSVQTLEDVPAAP-PLDITCSALSSTSLSVTWQPPPLLLQNG-EILGYKVYY 199
G S+ + V+ +P AP T S + ++++TW P ++ Y +
Sbjct: 4 GSSGRSAHLRVR---QLPHAPEHPVATLSTVERRAINLTWTKPF---DGNSPLIRYILEM 57
Query: 200 E 200
Sbjct: 58 S 58
>2ee3_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 108
Score = 60.5 bits (147), Expect = 2e-12
Identities = 20/116 (17%), Positives = 30/116 (25%), Gaps = 13/116 (11%)
Query: 49 TEAEPPTAEPSGLHAVAISSDSIRVTWSPPPAHLTNGDLLGYYLGYREQGFGRQNSYNFT 108
+ A P L +S D+ RV W P + + Y T
Sbjct: 2 SSGSSGLAPPRHLGFSDVSHDAARVFWEGAP-----RPVRLVRVTYVSSE---GGHSGQT 53
Query: 109 TIPNRSDGAGVATLTGLRKYRKYDIVVQAFNEKGPGPMSSEVSVQTLEDVPAAPPL 164
P + A L L Y + V G + T + P+
Sbjct: 54 EAPGNAT---SAMLGPLSSSTTYTVRVTCLYPGGGSSTLT--GRVTTKKAPSPSSG 104
Score = 43.2 bits (102), Expect = 4e-06
Identities = 10/41 (24%), Positives = 16/41 (39%), Gaps = 5/41 (12%)
Query: 159 PAAPPLDITCSALSSTSLSVTWQPPPLLLQNGEILGYKVYY 199
APP + S +S + V W+ P + +V Y
Sbjct: 7 GLAPPRHLGFSDVSHDAARVFWEGAP-----RPVRLVRVTY 42
Score = 41.3 bits (97), Expect = 2e-05
Identities = 14/51 (27%), Positives = 20/51 (39%)
Query: 9 SGTEQWAVLQDLLPATLYRVRVLAENSLGAGRPSDPLLVHTEAEPPTAEPS 59
G A+L L +T Y VRV G + +A P++ PS
Sbjct: 56 PGNATSAMLGPLSSSTTYTVRVTCLYPGGGSSTLTGRVTTKKAPSPSSGPS 106
>3lqm_A Interleukin-10 receptor subunit beta; IL-10R2, common chain,
cytokine, IL-10, IL-22, IL- 28, IL-29, disulfide bond,
glycoprotein, membrane; 2.14A {Homo sapiens}
Length = 201
Score = 62.8 bits (152), Expect = 2e-12
Identities = 30/162 (18%), Positives = 47/162 (29%), Gaps = 23/162 (14%)
Query: 11 TEQWAVLQDLLPATLYRVRVLAENSLGAGRPSDPLLVHTEAEPPTAEPSGLHAVAISSDS 70
T L + +RV AE A SD + + T V + +D
Sbjct: 51 TLTECDFSSLSKYGDHTLRVRAEF---ADEHSDWVQITFSPVDDTIIGPPGMQVEVLADC 107
Query: 71 IRVTWSPPPAH--------LTNGDLLGYYLGYREQGFGRQNSYNFTTIPNRSDGAGVATL 122
+ + + P + Y + Y +QG + L
Sbjct: 108 LHMRFLAPKIENEYETWTMKNVYNSWTYNVQYWKQGTDEKFQITPQY--------DFEVL 159
Query: 123 TGLRKYRKYDIVVQAFNE--KGPGPMSSEVSVQTLED--VPA 160
L + Y + V+ F G S V QT D VP+
Sbjct: 160 RNLEPWTTYCVQVRGFLPDRNKAGEWSEPVCEQTTHDETVPS 201
Score = 47.8 bits (113), Expect = 4e-07
Identities = 19/150 (12%), Positives = 42/150 (28%), Gaps = 23/150 (15%)
Query: 58 PSGLHAVAISSDSIRVTWSPPPAHLTNGDLLGYYLGYREQGFGRQNSYNFTTIPNRSDGA 117
P + +++ +I + W P L + Y + TT+
Sbjct: 5 PENVRMNSVNFKNI-LQWESPAFAKGQ---LTFTAQYLSYRIFQDKCMQ-TTLTE----- 54
Query: 118 GVATLTGLRKYRKYDIVVQAFNEKGPGPMSSEVSVQTLEDVPAAPPLDITCSALSSTSLS 177
+ L KY + + V+A + + P + + + + L
Sbjct: 55 --CDFSSLSKYGDHTLRVRAEFADEHSDWVQITFSPVDDTIIGPPGMQVE---VLADCLH 109
Query: 178 VTWQPPPL--------LLQNGEILGYKVYY 199
+ + P + + Y V Y
Sbjct: 110 MRFLAPKIENEYETWTMKNVYNSWTYNVQY 139
Score = 29.7 bits (66), Expect = 0.56
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Query: 3 EWKSQNSGTEQWAVLQDLLPATLY--RVRVLAENSLGAGRPSDPLLVHTEAEPPTAEPS 59
+ K Q + + VL++L P T Y +VR + AG S+P+ T + PS
Sbjct: 145 DEKFQITPQYDFEVLRNLEPWTTYCVQVRGFLPDRNKAGEWSEPVCEQTTHDETV--PS 201
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Length = 305
Score = 64.0 bits (156), Expect = 2e-12
Identities = 35/146 (23%), Positives = 49/146 (33%), Gaps = 23/146 (15%)
Query: 25 LYRVRVLAENSLGAGRPSDPLLVHTEAEPPTAEPSGLHAVAISSDSIRVTWSPPPAHLTN 84
Y V A+N G + + L V A+ P P G+ +S DS+ +TW+ P +
Sbjct: 175 FYVVC--AKNRFGIDQKTVELDV---ADVPDP-PRGVKVSDVSRDSVNLTWTEPASD-GG 227
Query: 85 GDLLGYYLGYREQGFGR---QNSYNFTTIPNRSDGAGVATLTGLRKYRKYDIVVQAFNEK 141
+ Y + R T T+ L Y V A N+
Sbjct: 228 SKITNYIVEKCATTAERWLRVGQARETR----------YTVINLFGKTSYQFRVIAENKF 277
Query: 142 GPGPMSSEVS--VQTLEDVPAAPPLD 165
G SE S T ED A D
Sbjct: 278 GLSK-PSEPSEPTITKEDKTRAMNYD 302
Score = 51.7 bits (124), Expect = 3e-08
Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Query: 3 EWKSQNSGTEQWAVLQDLLPATLYRVRVLAENSLGAGRPSDPL-LVHTEAEPPTAEP 58
W E + +L T Y+ RV+AEN G +PS+P T+ + A
Sbjct: 244 RWLRVGQARETRYTVINLFGKTSYQFRVIAENKFGLSKPSEPSEPTITKEDKTRAMN 300
Score = 36.7 bits (85), Expect = 0.003
Identities = 24/95 (25%), Positives = 35/95 (36%), Gaps = 12/95 (12%)
Query: 111 PNRSDGAGVATLTGLRKYRKYDI---VVQAFNEKGPGPMSSEVSVQTLEDVPAAPPLDIT 167
+L + D VV A N G + E+ V DVP PP +
Sbjct: 151 YQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVA---DVPD-PPRGVK 206
Query: 168 CSALSSTSLSVTWQPPPLLLQNG--EILGYKVYYE 200
S +S S+++TW P +G +I Y V
Sbjct: 207 VSDVSRDSVNLTWTEP---ASDGGSKITNYIVEKC 238
>2db8_A Tripartite motif protein 9, isoform 2; ring finger protein 91,
TRIM9, KIAA0282, RNF91, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 110
Score = 60.5 bits (147), Expect = 2e-12
Identities = 24/111 (21%), Positives = 37/111 (33%), Gaps = 9/111 (8%)
Query: 49 TEAEPPTAEPSGLHAVAISSDSIRVTWSPPPAHLTNGDLLGYYLGYREQGFGRQNSYNFT 108
+ P L ++S ++W PP GY L + G+
Sbjct: 5 SSGPVPATPILQLEECCTHNNSATLSWKQPPLS--TVPADGYILELDDGNGGQ--FREVY 60
Query: 109 TIPNRSDGAGVATLTGLRKYRKYDIVVQAFNEKGPGPMSSEVSVQTLEDVP 159
T+ GL Y+ V+AFN+ G P S + +QT E
Sbjct: 61 VGKETM-----CTVDGLHFNSTYNARVKAFNKTGVSPYSKTLVLQTSEGSG 106
Score = 49.4 bits (118), Expect = 2e-08
Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Query: 3 EWKSQNSGTEQWAVLQDLLPATLYRVRVLAENSLGAGRPSDPLLVHT-EAEPPTA 56
+++ G E + L + Y RV A N G S L++ T E P++
Sbjct: 55 QFREVYVGKETMCTVDGLHFNSTYNARVKAFNKTGVSPYSKTLVLQTSEGSGPSS 109
Score = 42.4 bits (100), Expect = 8e-06
Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Query: 151 SVQTLEDVPAAPPLDITCSALSSTSLSVTWQPPPLLLQNGEILGYKVYY 199
S + VPA P L + + S +++W+ PP L GY +
Sbjct: 2 SSGSSGPVPATPILQLEECCTHNNSATLSWKQPP--LSTVPADGYILEL 48
>1x4z_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes
(CDON)binding...; fibronectin type III, FN3; NMR {Mus
musculus} SCOP: b.1.2.1
Length = 121
Score = 60.5 bits (147), Expect = 2e-12
Identities = 28/127 (22%), Positives = 41/127 (32%), Gaps = 9/127 (7%)
Query: 37 GAGRPSDPLLVHTEAEPPTAEPSGLHAVAISSDSIRVTWSPPPAHLTNGDLLGYYLGYRE 96
G+ S H PP A P S S+ VTW P + + + Y++
Sbjct: 1 GSSGSSGSQPDHGRLSPPEA-PDRPTISTASETSVYVTWIPRGNG--GFPIQSFRVEYKK 57
Query: 97 Q-GFGRQNSYNFTTIPNRSDGAGVATLTGLRKYRKYDIVVQAFNEKGPGPMSSEV-SVQT 154
G P+R +TGL K Y V+A N G S+
Sbjct: 58 LKKVGDWILATSAIPPSRLS----VEITGLEKGISYKFRVRALNMLGESEPSAPSRPYVV 113
Query: 155 LEDVPAA 161
P++
Sbjct: 114 SGSGPSS 120
Score = 47.4 bits (113), Expect = 1e-07
Identities = 13/58 (22%), Positives = 19/58 (32%), Gaps = 4/58 (6%)
Query: 3 EWKSQN---SGTEQWAVLQDLLPATLYRVRVLAENSLGAGRPSDP-LLVHTEAEPPTA 56
+W + + L Y+ RV A N LG PS P P++
Sbjct: 63 DWILATSAIPPSRLSVEITGLEKGISYKFRVRALNMLGESEPSAPSRPYVVSGSGPSS 120
Score = 37.7 bits (88), Expect = 4e-04
Identities = 17/58 (29%), Positives = 20/58 (34%), Gaps = 7/58 (12%)
Query: 142 GPGPMSSEVSVQTLEDVPAAPPLDITCSALSSTSLSVTWQPPPLLLQNG--EILGYKV 197
G S P P T S S TS+ VTW P NG I ++V
Sbjct: 1 GSSGSSGSQPDHGRLSPPE-APDRPTISTASETSVYVTWIPR----GNGGFPIQSFRV 53
>2ocf_D Fibronectin; estrogen receptor, LBD, monobody, estradiol,
hormone-growth complex; HET: CME EST; 2.95A {Homo
sapiens}
Length = 121
Score = 60.3 bits (146), Expect = 3e-12
Identities = 25/129 (19%), Positives = 43/129 (33%), Gaps = 16/129 (12%)
Query: 26 YRVRVLAENSLGAGRPSDPLLVHTEAEPPTAEPSGLHAVAISSDSIRVTWSPPPAHLTNG 85
+ + + P+ L VA + S+ ++W P
Sbjct: 5 HHHHSSDYKDDDDKGENLY----FQGSVSDV-PTKLEVVAATPTSLLISWDAPA-----V 54
Query: 86 DLLGYYLGYREQGFGRQNSYNFTTIPNRSDGAGVATLTGLRKYRKYDIVVQAFNEKGPGP 145
+ Y + Y E G G FT ++S AT++GL+ Y I V A
Sbjct: 55 TVRYYRITYGETG-GNSPVQEFTVPGSKST----ATISGLKPGVDYTITVYAVTGLRLML 109
Query: 146 MSSE-VSVQ 153
S+ +S+
Sbjct: 110 AGSKPISIN 118
Score = 42.2 bits (99), Expect = 1e-05
Identities = 9/47 (19%), Positives = 18/47 (38%), Gaps = 5/47 (10%)
Query: 154 TLEDVPAAPPLDITCSALSSTSLSVTWQPPPLLLQNGEILGYKVYYE 200
+ + P + A + TSL ++W P + Y++ Y
Sbjct: 23 YFQGSVSDVPTKLEVVAATPTSLLISWDAPA-----VTVRYYRITYG 64
Score = 35.3 bits (81), Expect = 0.004
Identities = 10/40 (25%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Query: 9 SGTEQWAVLQDLLPATLYRVRVLAENSLGAGRP-SDPLLV 47
G++ A + L P Y + V A L S P+ +
Sbjct: 78 PGSKSTATISGLKPGVDYTITVYAVTGLRLMLAGSKPISI 117
>1cd9_B G-CSF-R, protein (G-CSF receptor); class1 cytokine, hematopoietic
receptor, signal transduction cytokine; HET: NAG; 2.80A
{Mus musculus} SCOP: b.1.2.1 b.1.2.1 PDB: 1pgr_B 1cto_A
1gcf_A
Length = 215
Score = 62.1 bits (150), Expect = 3e-12
Identities = 27/148 (18%), Positives = 48/148 (32%), Gaps = 16/148 (10%)
Query: 18 QDLLPATLYRVRVLAENSLGAGRPSDPLLVHTEAEPPTAEPSGLHA------VAISSDSI 71
++LL + V AEN LG+ S L + P V+ +
Sbjct: 73 KNLLLYQYMAIWVQAENMLGSSE-SPKLCLDPMDVVKLEPPMLQALDIGPDVVSHQPGCL 131
Query: 72 RVTWSPPPAHLTNGDLLGYYLGYREQGFGRQNSYNFTTIPNRSDGAGVATLTGLRKYRKY 131
++W P + L Y+ Q N+T + + L GL + Y
Sbjct: 132 WLSWKPWK--PSEYMEQECELRYQPQL----KGANWTLVFHLPSSKDQFELCGLHQAPVY 185
Query: 132 DIVVQAFNEKGPG---PMSSEVSVQTLE 156
+ ++ PG P S + ++
Sbjct: 186 TLQMRCIRSSLPGFWSPWSPGLQLRPTM 213
Score = 48.3 bits (114), Expect = 3e-07
Identities = 28/156 (17%), Positives = 54/156 (34%), Gaps = 12/156 (7%)
Query: 53 PPTAEPSGLHAVA-ISSDSIRVTWSPPPAHLTNGDLLGYYLGYREQGFGRQNSYNFTTIP 111
PP A PS L + ++++S+ W P P + R + ++
Sbjct: 4 PP-ASPSNLSCLMHLTTNSLVCQWEPGPETHLPTSFILKSFRSRADCQYQGDTIPDCVAK 62
Query: 112 NRSDGAGVATLTGLRKYRKYDIVVQAFNEKGPGPMSSEVSVQTLEDVPAAPPLDIT---- 167
R + + L Y+ I VQA N G S ++ + ++ V PP+
Sbjct: 63 KRQNNCSI-PRKNLLLYQYMAIWVQAENMLGSS-ESPKLCLDPMDVVKLEPPMLQALDIG 120
Query: 168 --CSALSSTSLSVTWQPPPLLLQNGEILGYKVYYEN 201
+ L ++W+P ++ Y+
Sbjct: 121 PDVVSHQPGCLWLSWKPWK--PSEYMEQECELRYQP 154
Score = 32.9 bits (74), Expect = 0.053
Identities = 7/41 (17%), Positives = 13/41 (31%)
Query: 3 EWKSQNSGTEQWAVLQDLLPATLYRVRVLAENSLGAGRPSD 43
++ L L A +Y +++ S G S
Sbjct: 162 TLVFHLPSSKDQFELCGLHQAPVYTLQMRCIRSSLPGFWSP 202
>2kbg_A N-CAM 2, neural cell adhesion molecule 2; fibronectin type III
module, beta-sheet sandwich, cell membrane,
glycoprotein, immunoglobulin domain; NMR {Homo sapiens}
Length = 114
Score = 59.5 bits (144), Expect = 4e-12
Identities = 20/116 (17%), Positives = 33/116 (28%), Gaps = 10/116 (8%)
Query: 50 EAEPPTAEPS--GLHAVAISSDSIRVTWSPPPAHLTNGDLLGYYLGYREQGFGRQNSYNF 107
EAE EPS +H S S +++ + +L Y + YR + Q
Sbjct: 1 EAEASMREPSPPSIHGQPSSGKSFKLSITKQDDG--GAPILEYIVKYRSKDKEDQWLEKK 58
Query: 108 TTIPNRSDGAGVATLTGLRKYRKYDIVVQAFNEKGPGPMSSEVSVQTLEDVPAAPP 163
L L+ Y++ + A N G +
Sbjct: 59 VQGNKDH-----IILEHLQWTMGYEVQITAANRLGYSE-PTVYEFSMPPKPNIIKD 108
Score = 45.6 bits (108), Expect = 6e-07
Identities = 12/54 (22%), Positives = 20/54 (37%), Gaps = 1/54 (1%)
Query: 9 SGTEQWAVLQDLLPATLYRVRVLAENSLGAGRPSDPLLVHTEAEPPTAEPSGLH 62
G + +L+ L Y V++ A N LG P+ +P + H
Sbjct: 60 QGNKDHIILEHLQWTMGYEVQITAANRLGYSEPTVYEFS-MPPKPNIIKDHHHH 112
Score = 27.9 bits (62), Expect = 1.1
Identities = 11/45 (24%), Positives = 14/45 (31%), Gaps = 6/45 (13%)
Query: 157 DVPAAPPLDITCSALSSTSLSVTWQPPPLLLQNGE-ILGYKVYYE 200
P+ P I S S ++ G IL Y V Y
Sbjct: 7 REPSPP--SIHGQPSSGKSFKLSITKQD---DGGAPILEYIVKYR 46
>2cuh_A Tenascin-X; fibronectin type III domain, extracellular matrix,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 115
Score = 59.4 bits (144), Expect = 6e-12
Identities = 18/120 (15%), Positives = 36/120 (30%), Gaps = 17/120 (14%)
Query: 58 PSGLHAVAISSDSIRVTWSPPPAHLTNGDLLGYYLGYREQGFGRQNSYNFTTIPNRSDGA 117
P+ L A+ ++ + W PP + Y + G T + D
Sbjct: 11 PTQLRALNLTEGFAVLHWKPPQNPVD-----TYDIQVTAPG---APPLQAETPGSAVD-- 60
Query: 118 GVATLTGLRKYRKYDIVVQAFNEKGPGPMSSEVSVQTLEDVPAAPPLDITCSALSSTSLS 177
L L + Y V+ + ++ T + P D+ ++ + S
Sbjct: 61 --YPLHDLVLHTNYTATVRGLRGPNLTS-PASITFTTGLE----APRDLEAKEVTPSGPS 113
Score = 39.3 bits (92), Expect = 1e-04
Identities = 13/69 (18%), Positives = 22/69 (31%), Gaps = 5/69 (7%)
Query: 3 EWKSQNSGTEQWAVLQDLLPATLYRVRVLAENSLGAGRPSDPLLVHTEAEPPTAEPSGLH 62
+++ G+ L DL+ T Y V P+ + T E P L
Sbjct: 49 PLQAETPGSAVDYPLHDLVLHTNYTATVRGLRGPNLTSPA-SITFTTGLEAPR----DLE 103
Query: 63 AVAISSDSI 71
A ++
Sbjct: 104 AKEVTPSGP 112
Score = 37.8 bits (88), Expect = 4e-04
Identities = 8/49 (16%), Positives = 15/49 (30%), Gaps = 9/49 (18%)
Query: 151 SVQTLEDVPAAPPLDITCSALSSTSLSVTWQPPPLLLQNGEILGYKVYY 199
S + D P + L+ + W+PP + Y +
Sbjct: 3 SGSSGPD----GPTQLRALNLTEGFAVLHWKPPQ-----NPVDTYDIQV 42
>2crm_A Fibronectin type-III domain containing protein 3A; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 120
Score = 59.0 bits (143), Expect = 8e-12
Identities = 25/128 (19%), Positives = 40/128 (31%), Gaps = 10/128 (7%)
Query: 37 GAGRPSDPLLVHTEAEPPTAEPSGLHAVA-ISSDSIRVTWSPPPAHLTNGDLLGYYLGYR 95
G+ S + T + P P I S S ++TW PP + Y +
Sbjct: 1 GSSGSSGVVEFTTCPDKPGI-PVKPSVKGKIHSHSFKITWDPP-KDNGGATINKYVVEMA 58
Query: 96 EQGFGRQNSYNFTTIPNRSDGAGVATLTGLRKYRKYDIVVQAFNEKGPGPMSSEVSVQTL 155
E N + I + + L Y + V ++ G +S + VQT
Sbjct: 59 EGS----NGNKWEMIYSGATRE--HLCDRLNPGCFYRLRVYCISDGGQSAVSESLLVQT- 111
Query: 156 EDVPAAPP 163
V
Sbjct: 112 PAVSGPSS 119
Score = 54.0 bits (130), Expect = 7e-10
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Query: 3 EWKSQNSGTEQWAVLQDLLPATLYRVRVLAENSLGAGRPSDPLLVHTEAEPPTAEPSG 60
+W+ SG + + L P YR+RV + G S+ LLV T A SG
Sbjct: 65 KWEMIYSGATREHLCDRLNPGCFYRLRVYCISDGGQSAVSESLLVQTPAVSGP--SSG 120
Score = 42.4 bits (100), Expect = 1e-05
Identities = 18/60 (30%), Positives = 20/60 (33%), Gaps = 5/60 (8%)
Query: 142 GPGPMSSEVSVQTLEDVPAAPPLDITCSALSSTSLSVTWQPPPLLLQNG--EILGYKVYY 199
G S V T D P P + S S +TW PP NG I Y V
Sbjct: 1 GSSGSSGVVEFTTCPDKPGIPVKPSVKGKIHSHSFKITWDPP---KDNGGATINKYVVEM 57
>4doh_R Interleukin-20 receptor subunit alpha; IL10 family cytokine
receptor complex, alpha helical cytokin beta sandwhich
receptor fold, signaling complex; HET: NAG; 2.80A {Homo
sapiens}
Length = 221
Score = 61.0 bits (147), Expect = 9e-12
Identities = 29/176 (16%), Positives = 47/176 (26%), Gaps = 23/176 (13%)
Query: 1 DVEWKSQNSGTEQWAVLQDLLPATLYRVRVLAENSLGAGRPSDPLLVHTEAEPPTAEPSG 60
+ + T + Y RV A + ++ + E P
Sbjct: 55 NKSECRNINRTYCDLSAETSDYEHQYYARVRAIWGTKCSKWAESGRFYPFLETQIGPPE- 113
Query: 61 LHAVAISSDSIRVTWSPPPAHLTN-----------GDLLGYYLGYREQGFGRQNSYNFTT 109
A+ SI V + P N L Y + R S T
Sbjct: 114 -VALTTDEKSISVVLTAPEKWKRNPEDLPVSMQQIYSNLKYNVSVLNTKSNRTWSQCVT- 171
Query: 110 IPNRSDGAGVATLTGLRKYRKYDIVVQAFNE--KGPGPMSSEVSVQTLEDVPAAPP 163
N + LT L Y + V++F S + +TL+D +
Sbjct: 172 --NHT-----LVLTWLEPNTLYCVHVESFVPGPPRRAQPSEKQCARTLKDQSSIEG 220
Score = 49.9 bits (118), Expect = 9e-08
Identities = 22/148 (14%), Positives = 51/148 (34%), Gaps = 9/148 (6%)
Query: 58 PSGLHAVAISSDSIRVTWSPPPAHLTNGDLLGYYLGYREQGFGRQNSYNFTTIPNRSDGA 117
P+ + ++I+ ++ + W+PP G + Y + Y +G++ N + N +
Sbjct: 12 PANITFLSINMKNV-LQWTPPEGL--QGVKVTYTVQYFI--YGQKKWLNKSECRNINRTY 66
Query: 118 GVATLTGLRKYRKYDIVVQAFNEKGPGPMSSEVSVQTLEDVPAAPPLDITCSALSSTSLS 177
+ +Y V+A + + PP ++ + S+S
Sbjct: 67 CDLSAETSDYEHQYYARVRAIWGTKCSKWAESGRFYPFLETQIGPP-EVALTT-DEKSIS 124
Query: 178 VTWQPP--PLLLQNGEILGYKVYYENMR 203
V P + + Y N++
Sbjct: 125 VVLTAPEKWKRNPEDLPVSMQQIYSNLK 152
>3n06_B PRL-R, prolactin receptor; PH dependence, hematopoietic cytokine,
hormone-hormone recep complex; 2.00A {Homo sapiens} PDB:
3mzg_B 3n0p_B 3ncb_B 1bp3_B 3d48_R 3nce_B 3ncc_B 3ncf_B
3ew3_B 3npz_B 1f6f_B 2lfg_A
Length = 210
Score = 60.9 bits (147), Expect = 1e-11
Identities = 24/148 (16%), Positives = 43/148 (29%), Gaps = 13/148 (8%)
Query: 18 QDLLPATLYRVRVLAENSLGAGRPSDPLLVHTEA---EPPTAEPSGLHAVAISSDSIRVT 74
Q Y + V A N +G+ + + T +PP + + +
Sbjct: 67 QYTSMWRTYIMMVNATNQMGSSFSDELYVDVTYIVQPDPPLELAVEVKQPEDRKPYLWIK 126
Query: 75 WSPPPA--HLTNGDLLGYYLGYREQGFGRQNSYNFTTIPNRSDGAGVATLTGLRKYRKYD 132
WSPP T L Y + + + + + L +KY
Sbjct: 127 WSPPTLIDLKTGWFTLLYEIRLKPEKAAEWEIHFAGQ-------QTEFKILSLHPGQKYL 179
Query: 133 IVVQAFNEKGP-GPMSSEVSVQTLEDVP 159
+ V+ + G S +Q D
Sbjct: 180 VQVRCKPDHGYWSAWSPATFIQIPSDFT 207
Score = 51.6 bits (123), Expect = 2e-08
Identities = 32/156 (20%), Positives = 51/156 (32%), Gaps = 19/156 (12%)
Query: 53 PPTAEPSGLHAVAISSDSIRVTWSPPPAHLTNGDLLGYYLGYREQGFGRQNSYNFTTIPN 112
PP +P + + ++ W P + Y L Y R+ P+
Sbjct: 3 PP-GKPEIFKCRSPNKETFTCWWRPGTDGGLPTN---YSLTYH-----REGETLMHECPD 53
Query: 113 RSDGAGVA---TLTGLRKYRKYDIVVQAFNEKGPGPMSSEVSVQTLEDVPAAPPLDITCS 169
G + +R Y ++V A N+ G S E+ V V PPL++
Sbjct: 54 YITGGPNSCHFGKQYTSMWRTYIMMVNATNQMGSSF-SDELYVDVTYIVQPDPPLELAVE 112
Query: 170 AL----SSTSLSVTWQPPPL--LLQNGEILGYKVYY 199
L + W PP L L L Y++
Sbjct: 113 VKQPEDRKPYLWIKWSPPTLIDLKTGWFTLLYEIRL 148
Score = 35.8 bits (82), Expect = 0.005
Identities = 10/56 (17%), Positives = 19/56 (33%), Gaps = 1/56 (1%)
Query: 1 DVEWKSQNSGTEQWAVLQDLLPATLYRVRVLAENSLGA-GRPSDPLLVHTEAEPPT 55
EW+ +G + + L P Y V+V + G S + ++
Sbjct: 153 AAEWEIHFAGQQTEFKILSLHPGQKYLVQVRCKPDHGYWSAWSPATFIQIPSDFTM 208
Score = 30.8 bits (69), Expect = 0.20
Identities = 9/47 (19%), Positives = 16/47 (34%), Gaps = 3/47 (6%)
Query: 158 VPAAPPLDITCSALSSTSLSVTWQPPPLLLQNGEILGYKVYYENMRE 204
+P P C + + + + W+P G Y + Y E
Sbjct: 2 LPPGKPEIFKCRSPNKETFTCWWRPGT---DGGLPTNYSLTYHREGE 45
>3qwq_B Adnectin; cell surface receptor, tyrosine kinase, glycoprotein,
adnect antitumor, drug, engineered binding protein; HET:
NAG BMA MAN FUC; 2.75A {Homo sapiens} PDB: 3qwr_D*
Length = 114
Score = 58.4 bits (141), Expect = 1e-11
Identities = 25/110 (22%), Positives = 37/110 (33%), Gaps = 18/110 (16%)
Query: 58 PSGLHAVAISSDSIRVTWSPPPAHLTNGDLLGYYLGYREQGFGRQNSYNFTTIPNRSDGA 117
P L VA + S+ ++W Y + Y E G G FT
Sbjct: 7 PRDLEVVAATPTSLLISWDSGRGSYQ-----YYRITYGETG-GNSPVQEFTVPGPVHT-- 58
Query: 118 GVATLTGLRKYRKYDIVVQAFNEKGPGPMSSE--------VSVQTLEDVP 159
AT++GL+ Y I V A + P ++ +T D P
Sbjct: 59 --ATISGLKPGVDYTITVYAVTDHKPHADGPHTYHESPISINYRTEIDKP 106
Score = 41.0 bits (96), Expect = 3e-05
Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 6/42 (14%)
Query: 158 VPAAPPLDITCSALSSTSLSVTWQPPPLLLQNGEILGYKVYY 199
V P D+ A + TSL ++W G Y++ Y
Sbjct: 3 VSD-VPRDLEVVAATPTSLLISWDSGR-----GSYQYYRITY 38
Score = 31.8 bits (72), Expect = 0.057
Identities = 10/58 (17%), Positives = 14/58 (24%), Gaps = 4/58 (6%)
Query: 9 SGTEQWAVLQDLLPATLYRVRVLAENSLGAGRPSDPLL----VHTEAEPPTAEPSGLH 62
G A + L P Y + V A + +PS H
Sbjct: 53 PGPVHTATISGLKPGVDYTITVYAVTDHKPHADGPHTYHESPISINYRTEIDKPSQHH 110
>3teu_A Fibcon; FN3 domain, fibronectin TPYE III domain, consensus design,
S de novo protein; HET: DIO; 1.00A {Synthetic}
Length = 98
Score = 57.8 bits (140), Expect = 1e-11
Identities = 23/102 (22%), Positives = 37/102 (36%), Gaps = 11/102 (10%)
Query: 58 PSGLHAVAISSDSIRVTWSPPPAHLTNGDLLGYYLGYREQGFGRQNSYNFTTIPNRSDGA 117
P+ L ++ SI V+W+PP A +T GY + Y + + S
Sbjct: 5 PTDLQVTNVTDTSITVSWTPPSATIT-----GYRITYTPSNGPGEPKELTVPPSSTS--- 56
Query: 118 GVATLTGLRKYRKYDIVVQAFNEKGPGPMSSEVSVQTLEDVP 159
T+TGL +Y + V A + P + T
Sbjct: 57 --VTITGLTPGVEYVVSVYALKDNQESP-PLVGTQTTGGHHH 95
Score = 40.9 bits (96), Expect = 3e-05
Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 5/39 (12%)
Query: 162 PPLDITCSALSSTSLSVTWQPPPLLLQNGEILGYKVYYE 200
P D+ + ++ TS++V+W PP + I GY++ Y
Sbjct: 4 APTDLQVTNVTDTSITVSWTPP-----SATITGYRITYT 37
Score = 37.0 bits (86), Expect = 5e-04
Identities = 7/34 (20%), Positives = 9/34 (26%)
Query: 9 SGTEQWAVLQDLLPATLYRVRVLAENSLGAGRPS 42
+ + L P Y V V A P
Sbjct: 51 PPSSTSVTITGLTPGVEYVVSVYALKDNQESPPL 84
>3v6o_A Leptin receptor; receptor-antibody complex, cytokine receptor,
antibody FAB F immunoglobulin fold; HET: NAG; 1.95A
{Homo sapiens}
Length = 206
Score = 60.1 bits (145), Expect = 2e-11
Identities = 23/151 (15%), Positives = 47/151 (31%), Gaps = 12/151 (7%)
Query: 6 SQNSGTEQWAVLQDLLPATLYRVRVLAENSLGAGRPSDPLLVHTEAEPPTAEPSGLHAVA 65
S + Q + + Y + + +SLG+ S P V ++ PS + A
Sbjct: 62 YLQSDGFYECIFQPIFLLSGYTMWIRINHSLGSLD-SPPTCVLPDSVVKPLPPSSVKAEI 120
Query: 66 ISSDS-IRVTWSPPPAHLTNGDLLGYYLGYREQGFGRQNSYNFTTIPNRSDGAGVATLTG 124
+ ++++W P + L + + Y G + + +L
Sbjct: 121 TINIGLLKISWEKPV---FPENNLQFQIRYGLSG----KEVQWKMYEVYDAKSKSVSLPV 173
Query: 125 LRKYRKYDIVVQAFNEKGPGPM---SSEVSV 152
Y + V+ G G S+
Sbjct: 174 PDLCAVYAVQVRCKRLDGLGYWSNWSNPAYT 204
Score = 51.6 bits (123), Expect = 2e-08
Identities = 20/142 (14%), Positives = 38/142 (26%), Gaps = 9/142 (6%)
Query: 68 SDSIRVTWSPPPAH--LTNGDLLGYYL--GYREQGFGRQNSYNFTTIPNRSDGAGVATLT 123
+ WS + L Y+ Y +SDG
Sbjct: 15 LTKMTCRWSTSTIQSLAESTLQLRYHRSSLYCSDIPSIHPISEPKDCYLQSDGFYECIFQ 74
Query: 124 GLRKYRKYDIVVQAFNEKGPGPMSSEVSVQTLEDVPAAPPLDITCSALSSTS-LSVTWQP 182
+ Y + ++ + G S V V PP + + L ++W+
Sbjct: 75 PIFLLSGYTMWIRINHSLGSLD-SPPTCVLPDSVVKPLPPSSVKAEITINIGLLKISWEK 133
Query: 183 PPLLLQNGEILGYKVYYENMRE 204
P L +++ Y +
Sbjct: 134 PVF---PENNLQFQIRYGLSGK 152
Score = 32.0 bits (72), Expect = 0.085
Identities = 10/45 (22%), Positives = 17/45 (37%), Gaps = 2/45 (4%)
Query: 1 DVEWKSQN--SGTEQWAVLQDLLPATLYRVRVLAENSLGAGRPSD 43
+V+WK + L +Y V+V + G G S+
Sbjct: 153 EVQWKMYEVYDAKSKSVSLPVPDLCAVYAVQVRCKRLDGLGYWSN 197
>1j8k_A Fibronectin; EDA, TYPEIII domain, protein binding; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 94
Score = 57.0 bits (138), Expect = 2e-11
Identities = 22/103 (21%), Positives = 36/103 (34%), Gaps = 13/103 (12%)
Query: 58 PSGLHAVAISSDSIRVTWSPPPAHLTNGDLLGYYLGYREQGFGRQNSYNFTTIPNRSDGA 117
P GL + DSI++ W P ++ Y + Y G + +
Sbjct: 5 PKGLAFTDVDVDSIKIAWESPQGQVS-----RYRVTYSSPEDGIHELFPAPDGEEDT--- 56
Query: 118 GVATLTGLRKYRKYDIVVQAFNEKGPGPMSSEVSVQTLEDVPA 160
A L GLR +Y + V A ++ S + +PA
Sbjct: 57 --AELQGLRPGSEYTVSVVALHDDME---SQPLIGTQSTAIPA 94
Score = 39.7 bits (93), Expect = 6e-05
Identities = 8/39 (20%), Positives = 17/39 (43%), Gaps = 5/39 (12%)
Query: 162 PPLDITCSALSSTSLSVTWQPPPLLLQNGEILGYKVYYE 200
P + + + S+ + W+ P G++ Y+V Y
Sbjct: 4 RPKGLAFTDVDVDSIKIAWESP-----QGQVSRYRVTYS 37
Score = 35.1 bits (81), Expect = 0.002
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 9 SGTEQWAVLQDLLPATLYRVRVLAENSLGAGRPS 42
G E A LQ L P + Y V V+A + +P
Sbjct: 51 DGEEDTAELQGLRPGSEYTVSVVALHDDMESQPL 84
>1uem_A KIAA1568 protein; immunoglobulin-like beta-sandwich fold,
fibronectin type III, structural genomics; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 117
Score = 57.4 bits (139), Expect = 3e-11
Identities = 22/124 (17%), Positives = 41/124 (33%), Gaps = 9/124 (7%)
Query: 39 GRPSDPLLVHTEAEPPTAEPSGLHAVAISSDSIRVTWSPPPAHLTNGDLLGYYLGYREQG 98
G + ++ P PS ++ +S+ ++W P Y + Q
Sbjct: 1 GSSGSSGKNYDLSDLPGP-PSKPQVTDVTKNSVTLSWQPGTPG--TLPASAYIIEAFSQS 57
Query: 99 FGRQNSYNFTTIPNRSDGAGVATLTGLRKYRKYDIVVQAFNEKGPGPMSSEV-SVQTLED 157
+ T+ GLR Y +V+A N +G S V+T +
Sbjct: 58 VSNSWQTVANHVKTTL-----YTVRGLRPNTIYLFMVRAINPQGLSDPSPMSDPVRTQDS 112
Query: 158 VPAA 161
P++
Sbjct: 113 GPSS 116
Score = 40.8 bits (96), Expect = 3e-05
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 15 AVLQDLLPATLYRVRVLAENSLGAGRPSDP-LLVHTEAEPPTA 56
++ L P T+Y V A N G PS V T+ P++
Sbjct: 74 YTVRGLRPNTIYLFMVRAINPQGLSDPSPMSDPVRTQDSGPSS 116
Score = 31.2 bits (71), Expect = 0.094
Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 5/58 (8%)
Query: 144 GPMSSEVSVQTLEDVPAAPPLDITCSALSSTSLSVTWQPPPLLLQNG-EILGYKVYYE 200
G S L D+P PP + ++ S++++WQP Y +
Sbjct: 1 GSSGSSGKNYDLSDLPG-PPSKPQVTDVTKNSVTLSWQPGT---PGTLPASAYIIEAF 54
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin
domain, fibronectin type III repeat, CE adhesion; 1.80A
{Homo sapiens}
Length = 215
Score = 59.1 bits (143), Expect = 4e-11
Identities = 28/123 (22%), Positives = 48/123 (39%), Gaps = 8/123 (6%)
Query: 32 AENSLGAGRPSDPLLVHTEAEPPTAEPSGLHAVAISSDSIRVTWSPPPAHLTNGDLLGYY 91
A N +G L+ A+ P + V S + +V + P A +L Y
Sbjct: 95 AVNRIGQESLEFILVQ---ADTP--SSPSIDQVEPYSSTAQVQFDEPEAT-GGVPILKYK 148
Query: 92 LGYREQGFGRQNSYNFTTIPNRSDGAGVATLTGLRKYRKYDIVVQAFNEKGPGPMSSEVS 151
+R G +S + + G+ T+ GL+ Y + + A N KG G +S+
Sbjct: 149 AEWRAVGEEVWHSKWYD--AKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASE 206
Query: 152 VQT 154
+T
Sbjct: 207 FKT 209
Score = 49.8 bits (119), Expect = 9e-08
Identities = 15/51 (29%), Positives = 20/51 (39%), Gaps = 2/51 (3%)
Query: 7 QNSGTEQWAVLQDLLPATLYRVRVLAENSLGAGRPSDPLLVHTEAEPPTAE 57
+ + E + L P T Y VR+ A N G G S T +P E
Sbjct: 167 KEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKT--QPVQGE 215
Score = 31.7 bits (72), Expect = 0.10
Identities = 15/72 (20%), Positives = 25/72 (34%), Gaps = 12/72 (16%)
Query: 130 KYDIVVQAFNEKGPGPMSSEVSVQTLEDVPAAPPLDITCSALSSTSLSVTWQPPPLLLQN 189
Y+ N G + + D P++P +D S++ V + P
Sbjct: 90 NYNCTAV--NRIGQESLEFILVQA---DTPSSPSIDQV--EPYSSTAQVQFDEPE---AT 139
Query: 190 G--EILGYKVYY 199
G IL YK +
Sbjct: 140 GGVPILKYKAEW 151
>1bpv_A Titin, A71, connectin; fibronectin type III; NMR {Homo sapiens}
SCOP: b.1.2.1
Length = 112
Score = 56.2 bits (136), Expect = 7e-11
Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 9/115 (7%)
Query: 48 HTEAEPPTAEPSGLHAVAISSDSIRVTWSPPPAHLTNGDLLGYYLGYREQGFGRQNSYNF 107
H + P P + I+ ++ + W+ P + + Y + R+ GR NF
Sbjct: 5 HHHSSPIDP-PGKPVPLNITRHTVTLKWA-KPEYTGGFKITSYIVEKRDLPNGRWLKANF 62
Query: 108 TTIPNRSDGAGVATLTGLRKYRKYDIVVQAFNEKGPGPMSSEVS--VQTLEDVPA 160
+ I T++GL + Y+ V A N G SE S + +DV A
Sbjct: 63 SNILENE-----FTVSGLTEDAAYEFRVIAKNAAGAISPPSEPSDAITCRDDVEA 112
Score = 32.7 bits (75), Expect = 0.020
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 15 AVLQDLLPATLYRVRVLAENSLGA-GRPSDPLLVHTEAEPPTA 56
+ L Y RV+A+N+ GA PS+P T + A
Sbjct: 70 FTVSGLTEDAAYEFRVIAKNAAGAISPPSEPSDAITCRDDVEA 112
Score = 31.9 bits (73), Expect = 0.048
Identities = 9/41 (21%), Positives = 16/41 (39%), Gaps = 5/41 (12%)
Query: 159 PAAPPLDITCSALSSTSLSVTWQPPPLLLQNG--EILGYKV 197
P PP ++ ++++ W P G +I Y V
Sbjct: 10 PIDPPGKPVPLNITRHTVTLKWAKPE---YTGGFKITSYIV 47
>2yuw_A Myosin binding protein C, SLOW type; fibronectin III domain, SLOW-
type protein, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 110
Score = 56.2 bits (136), Expect = 8e-11
Identities = 24/115 (20%), Positives = 41/115 (35%), Gaps = 7/115 (6%)
Query: 49 TEAEPPTAEPSGLHAVAISSDSIRVTWSPPPAHLTNGDLLGYYLGYREQGFGRQNSYNFT 108
+ T+ P+ L +++ ++ + W PP H+ L GY L Y +G N
Sbjct: 2 SSGSSGTSPPTLLTVDSVTDTTVTMRWR-PPDHIGAAGLDGYVLEYCFEGTEDWIVANKD 60
Query: 109 TIPNRSDGAGVATLTGLRKYRKYDIVVQAFNEKGPGPMSSEVSVQTLEDVPAAPP 163
I T+TGL K + V+A N G +++
Sbjct: 61 LIDKTK-----FTITGLPTDAKIFVRVKAVNAAGASEPKYYSQPILVKE-SGPSS 109
Score = 38.5 bits (90), Expect = 2e-04
Identities = 11/44 (25%), Positives = 16/44 (36%), Gaps = 2/44 (4%)
Query: 15 AVLQDLLPATLYRVRVLAENSLGAGRPSDPL-LVHT-EAEPPTA 56
+ L VRV A N+ GA P + E+ P +
Sbjct: 67 FTITGLPTDAKIFVRVKAVNAAGASEPKYYSQPILVKESGPSSG 110
Score = 32.7 bits (75), Expect = 0.021
Identities = 11/43 (25%), Positives = 23/43 (53%), Gaps = 5/43 (11%)
Query: 159 PAAPPLDITCSALSSTSLSVTWQPPPLLLQNG--EILGYKVYY 199
+PP +T +++ T++++ W+PP G + GY + Y
Sbjct: 7 GTSPPTLLTVDSVTDTTVTMRWRPPD---HIGAAGLDGYVLEY 46
>4doh_B Interleukin-20 receptor subunit beta; IL10 family cytokine receptor
complex, alpha helical cytokin beta sandwhich receptor
fold, signaling complex; HET: NAG; 2.80A {Homo sapiens}
Length = 206
Score = 58.2 bits (140), Expect = 8e-11
Identities = 16/144 (11%), Positives = 32/144 (22%), Gaps = 15/144 (10%)
Query: 16 VLQDLLPATLYRVRVLAENSLGAGRPSDPLLVHTEAEPPTAEPSGLHAVAISSDSIRVTW 75
V D+ Y +RV A S + G+ + + +
Sbjct: 71 VTDDITATVPYNLRVRATLGSQTSAWSILKHPFNR-QSTILTRPGME-ITKDGFHLVIEL 128
Query: 76 SPPPAHLTNGDLLGYYLGYREQGFGRQNSYNFTTIPNRSDGAGVATLTGLRKYRKYDIVV 135
+ + Y + G + L + Y +
Sbjct: 129 EDLGPQFE------FLVAYWRREPGAEEHVKMVRSGGIP-----VHLETMEPGAAYCVKA 177
Query: 136 QAFNEK--GPGPMSSEVSVQTLED 157
Q F + S V+ +
Sbjct: 178 QTFVKAIGRYSAFSQTECVEVQGE 201
Score = 49.3 bits (117), Expect = 1e-07
Identities = 22/144 (15%), Positives = 45/144 (31%), Gaps = 14/144 (9%)
Query: 58 PSGLHAVAISSDSIRVTWSPPPAHLTNGDLLGYYLGYREQGFGRQNSYNFTTIPNRSDGA 117
P L ++ + + + WSP A G+ + Y + Y+ + S+ + S
Sbjct: 10 PQQLSVLSTNMKHL-LMWSPVIAP---GETVYYSVEYQGEYESLYTSHIWIPSSWCSLTE 65
Query: 118 G-VATLT-GLRKYRKYDIVVQAFNEKGPGPMSSEVSVQTLEDVPAAPPLDITCSALSSTS 175
G +T + Y++ V+A S + P + +
Sbjct: 66 GPECDVTDDITATVPYNLRVRATLGSQTSAWSILKHPFNRQSTILTRP-GMEITK-DGFH 123
Query: 176 LSVTWQPPPLLLQNGEILGYKVYY 199
L + + G + V Y
Sbjct: 124 LVIELEDL------GPQFEFLVAY 141
Score = 28.5 bits (63), Expect = 1.1
Identities = 7/54 (12%), Positives = 13/54 (24%), Gaps = 2/54 (3%)
Query: 3 EWKSQNSGTEQWAVLQDLLPATLY--RVRVLAENSLGAGRPSDPLLVHTEAEPP 54
E L+ + P Y + + + S V + E
Sbjct: 150 EHVKMVRSGGIPVHLETMEPGAAYCVKAQTFVKAIGRYSAFSQTECVEVQGEAI 203
>1x5y_A Myosin binding protein C, fast-type; fast MYBP-C, fibronectin type
III domain containing protein, cytoskeleton, muscle
contraction; NMR {Mus musculus} SCOP: b.1.2.1
Length = 111
Score = 55.8 bits (135), Expect = 1e-10
Identities = 19/114 (16%), Positives = 38/114 (33%), Gaps = 7/114 (6%)
Query: 49 TEAEPPTAEPSGLHAVAISSDSIRVTWSPPPAHLTNGDLLGYYLGYREQGFGRQNSYNFT 108
+ P +A P L ++ + + W PP + G + GY + Y +G N
Sbjct: 4 GSSGPTSA-PQHLTVEDVTDTTTTLKWR-PPDRIGAGGIDGYLVEYCLEGSEEWVPANKE 61
Query: 109 TIPNRSDGAGVATLTGLRKYRKYDIVVQAFNEKGPGPMSSEVSVQTLEDVPAAP 162
+ T+ L + V N G ++ + T+ + +
Sbjct: 62 PVERCG-----FTVKDLPTGARILFRVVGVNIAGRSEPATLLQPVTIRESGPSS 110
Score = 38.5 bits (90), Expect = 2e-04
Identities = 8/43 (18%), Positives = 14/43 (32%), Gaps = 3/43 (6%)
Query: 15 AVLQDLLPATLYRVRVLAENSLGAGRPS---DPLLVHTEAEPP 54
++DL RV+ N G P+ P+ +
Sbjct: 68 FTVKDLPTGARILFRVVGVNIAGRSEPATLLQPVTIRESGPSS 110
Score = 33.5 bits (77), Expect = 0.011
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
Query: 159 PAAPPLDITCSALSSTSLSVTWQPPPLLLQNG--EILGYKVYY 199
P + P +T ++ T+ ++ W+PP + G I GY V Y
Sbjct: 8 PTSAPQHLTVEDVTDTTTTLKWRPPD---RIGAGGIDGYLVEY 47
>1wfu_A Unnamed protein product; FN3 domain, similar to 1700007B22RIK
protein, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: b.1.2.1
Length = 120
Score = 55.3 bits (133), Expect = 2e-10
Identities = 19/122 (15%), Positives = 36/122 (29%), Gaps = 6/122 (4%)
Query: 42 SDPLLVHTEAEPPTAEPSGLHAVAISSDSIRVTWSPPPAHLTNGDLLGYYLGYREQGFGR 101
S + P ++P ++ SI + W +L + +
Sbjct: 3 SGSSGMEPHKVVPLSKPHPPVVGKVTHHSIELYWDLEQ-KEKRQGPQEQWLRFSIEEED- 60
Query: 102 QNSYNFTTIPNRSDGAGVATLTGLRKYRKYDIVVQAFNEKGPGPMSSEVSVQTLEDVPAA 161
+++ I A + GL Y ++ + G S VSV T +
Sbjct: 61 PKMHSYGVIYTGY--ATRHVVEGLEPRTLYKFRLKVTSPSGEYEYSPVVSVAT--TRESG 116
Query: 162 PP 163
P
Sbjct: 117 PS 118
Score = 47.6 bits (113), Expect = 1e-07
Identities = 13/52 (25%), Positives = 21/52 (40%)
Query: 3 EWKSQNSGTEQWAVLQDLLPATLYRVRVLAENSLGAGRPSDPLLVHTEAEPP 54
+ +G V++ L P TLY+ R+ + G S + V T E
Sbjct: 65 SYGVIYTGYATRHVVEGLEPRTLYKFRLKVTSPSGEYEYSPVVSVATTRESG 116
Score = 30.7 bits (69), Expect = 0.13
Identities = 8/63 (12%), Positives = 20/63 (31%)
Query: 147 SSEVSVQTLEDVPAAPPLDITCSALSSTSLSVTWQPPPLLLQNGEILGYKVYYENMRELP 206
S ++ + VP + P ++ S+ + W + G + + +
Sbjct: 3 SGSSGMEPHKVVPLSKPHPPVVGKVTHHSIELYWDLEQKEKRQGPQEQWLRFSIEEEDPK 62
Query: 207 MGK 209
M
Sbjct: 63 MHS 65
>2cum_A Tenascin-X; hexabrachion-like, fibronectin type III domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 105
Score = 53.6 bits (129), Expect = 6e-10
Identities = 22/106 (20%), Positives = 34/106 (32%), Gaps = 13/106 (12%)
Query: 58 PSGLHAVAISSDSIRVTWSPPPAHLTNGDLLGYYLGYREQGFGRQNSYNFTTIPNRSDGA 117
P L A ++ + +TW+ PP GY L + G + +
Sbjct: 11 PRDLEAKEVTPRTALLTWTEPPVRPA-----GYLLSFHTPG---GQTQEILLPGGITS-- 60
Query: 118 GVATLTGLRKYRKYDIVVQAFNEKGPGPMSSEVSVQTLEDVPAAPP 163
L GL Y+ +QA + P S S T + P
Sbjct: 61 --HQLLGLFPSTSYNARLQAMWGQSLLPPVS-TSFTTGGLRISGPS 103
Score = 40.9 bits (96), Expect = 3e-05
Identities = 8/39 (20%), Positives = 15/39 (38%), Gaps = 5/39 (12%)
Query: 162 PPLDITCSALSSTSLSVTWQPPPLLLQNGEILGYKVYYE 200
P D+ ++ + +TW PP GY + +
Sbjct: 10 APRDLEAKEVTPRTALLTWTEPP-----VRPAGYLLSFH 43
Score = 36.7 bits (85), Expect = 0.001
Identities = 9/46 (19%), Positives = 11/46 (23%)
Query: 9 SGTEQWAVLQDLLPATLYRVRVLAENSLGAGRPSDPLLVHTEAEPP 54
G L L P+T Y R+ A P
Sbjct: 55 PGGITSHQLLGLFPSTSYNARLQAMWGQSLLPPVSTSFTTGGLRIS 100
>2dmk_A Midline 2 isoform 2; midline defect 2, tripartite motif protein 1,
midin-2, ring finger protein 60, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 127
Score = 53.4 bits (128), Expect = 1e-09
Identities = 24/130 (18%), Positives = 43/130 (33%), Gaps = 12/130 (9%)
Query: 38 AGRPSDPLLVHTEAEPPTAEPSGLHAVAISSDSIRVTWSPPPAHLTNGDLLGYYLGYREQ 97
+G + L T PP+ S D+I V W + Y L Y
Sbjct: 3 SGSSGEGLDYLTAPNPPSIREE---LCTASHDTITVHWISDD----EFSISSYELQYTIF 55
Query: 98 GFGRQNSYNFTTIPNRSDGAGV----ATLTGLRKYRKYDIVVQAFNEKGPGPMSSEVSVQ 153
+ ++ + + T+ GL+ +Y +V+A N+ G S ++
Sbjct: 56 TGQANFISLYNSVDSWMIVPNIKQNHYTVHGLQSGTRYIFIVKAINQAGSRN-SEPTRLK 114
Query: 154 TLEDVPAAPP 163
T + P
Sbjct: 115 TNSQPFKSGP 124
Score = 42.6 bits (100), Expect = 8e-06
Identities = 13/57 (22%), Positives = 21/57 (36%), Gaps = 1/57 (1%)
Query: 3 EWKSQNSGTEQWAVLQDLLPATLYRVRVLAENSLGAGRPSDPLLVHTEAEPPTAEPS 59
W + + + L T Y V A N G+ P + T ++P + PS
Sbjct: 70 SWMIVPNIKQNHYTVHGLQSGTRYIFIVKAINQAGSRNSE-PTRLKTNSQPFKSGPS 125
Score = 38.4 bits (89), Expect = 3e-04
Identities = 12/55 (21%), Positives = 20/55 (36%), Gaps = 6/55 (10%)
Query: 147 SSEVSVQTLE--DVPAAPPLDITCSALSSTSLSVTWQPPPLLLQNGEILGYKVYY 199
SS S + L+ P P + S +++V W I Y++ Y
Sbjct: 2 SSGSSGEGLDYLTAPNPPSIREELCTASHDTITVHWISDD----EFSISSYELQY 52
>3g9v_A Interleukin 22 receptor, alpha 2; cytokine, cytokine receptor,
receptor, glycoprotein, polymorphism, secreted,
cytokine/cytokine receptor complex; 2.76A {Homo sapiens}
Length = 211
Score = 54.8 bits (131), Expect = 1e-09
Identities = 26/161 (16%), Positives = 54/161 (33%), Gaps = 17/161 (10%)
Query: 49 TEAEPPTAEPSGLHAVAISSDSIRVTWSPPPAHLTNGDLLGYYLGYREQGFGRQNSYNFT 108
T++ + +P + + + +I + W P A G+ Y++ Y + +G++ N
Sbjct: 2 TQSTHESLKPQRVQFQSRNFHNI-LQWQPGRAL--TGNSSVYFVQY--KIYGQRQWKNKE 56
Query: 109 TIPNRSDGAGVATLTGLRKYRKYDIVVQAFNEKGPGPMSSEVSVQTLEDVPAAPPLDITC 168
+ + T Y V+A + S + PP +
Sbjct: 57 DCWGTQELSCDLTSETSDIQEPYYGRVRAASAGSYSEWSMTPRFTPWWETKIDPP-VMNI 115
Query: 169 SALSSTSLSVTWQPPPLLLQNGEI----------LGYKVYY 199
+ + SL V P L + + L Y+V+
Sbjct: 116 TQ-VNGSLLVILHAPNLPYRYQKEKNVSIEDYYELLYRVFI 155
Score = 49.8 bits (118), Expect = 8e-08
Identities = 21/151 (13%), Positives = 39/151 (25%), Gaps = 29/151 (19%)
Query: 20 LLPATLYRVRVLAEN----SLGAGRPSDPLLVHTEAEPPTAEPSGLHAVAISSDSIRVTW 75
Y RV A + S + P T+ +PP + + S+ V
Sbjct: 73 SDIQEPYYGRVRAASAGSYSEWSMTPRFTPWWETKIDPPVMN------ITQVNGSLLVIL 126
Query: 76 SPPPAHLTNGDL----------LGYYLGYREQGFGRQNSYNFTTIPNRSDGAGVATLTGL 125
P L Y + ++ +R+ + L
Sbjct: 127 HAPNLPYRYQKEKNVSIEDYYELLYRVFIINNSLEKE--QKVYEGAHRA-----VEIEAL 179
Query: 126 RKYRKYDIVVQAFNEK--GPGPMSSEVSVQT 154
+ Y +V + + S E V+
Sbjct: 180 TPHSSYCVVAEIYQPMLDRRSQRSEERCVEI 210
Score = 30.1 bits (67), Expect = 0.41
Identities = 7/49 (14%), Positives = 16/49 (32%), Gaps = 2/49 (4%)
Query: 3 EWKSQNSGTEQWAVLQDLLPATLYRVRVLAENSL--GAGRPSDPLLVHT 49
+ + G + ++ L P + Y V + + S+ V
Sbjct: 162 KEQKVYEGAHRAVEIEALTPHSSYCVVAEIYQPMLDRRSQRSEERCVEI 210
>2cui_A Tenascin-X; fibronectin type III domain, extracellular matirx,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 112
Score = 52.7 bits (126), Expect = 2e-09
Identities = 19/114 (16%), Positives = 35/114 (30%), Gaps = 12/114 (10%)
Query: 49 TEAEPPTAEPSGLHAVAISSDSIRVTWSPPPAHLTNGDLLGYYLGYREQGFGRQNSYNFT 108
+ + P S L +++ S+R+ W PP G + L + +
Sbjct: 6 SGSRPR---LSQLSVTDVTTSSLRLNWEAPP-----GAFDSFLLRFGVPSPSTLEPHPRP 57
Query: 109 TIPNRSDGAGV---ATLTGLRKYRKYDIVVQAFNEKGPGPMSSEVSVQTLEDVP 159
+ G A L LR Y + + S + + +TL
Sbjct: 58 LLQRELMVPGTRHSAVLRDLRSGTLYSLTLYGLRGPHKAD-SIQGTARTLSGPS 110
Score = 35.3 bits (81), Expect = 0.003
Identities = 12/47 (25%), Positives = 17/47 (36%), Gaps = 1/47 (2%)
Query: 9 SGTEQWAVLQDLLPATLYRVRVLAENSLGAGRPSDPLLVHTEAEPPT 55
GT AVL+DL TLY + + T + P +
Sbjct: 66 PGTRHSAVLRDLRSGTLYSLTLYGLRGPHKADSI-QGTARTLSGPSS 111
Score = 32.3 bits (73), Expect = 0.033
Identities = 6/48 (12%), Positives = 18/48 (37%), Gaps = 5/48 (10%)
Query: 157 DVPAAPPLDITCSALSSTSLSVTWQPPPLLLQNGEILGYKVYYENMRE 204
++ + ++++SL + W+ PP G + + +
Sbjct: 6 SGSRPRLSQLSVTDVTTSSLRLNWEAPP-----GAFDSFLLRFGVPSP 48
>3tes_A Tencon; fibronectin type III domain, FN3, consensus design, de
novo; 2.50A {Synthetic}
Length = 98
Score = 52.1 bits (125), Expect = 2e-09
Identities = 18/106 (16%), Positives = 33/106 (31%), Gaps = 14/106 (13%)
Query: 58 PSGLHAVAISSDSIRVTWSPPPAHLTNGDLLGYYLGYREQGFGRQNSYNFTTIPNRSDGA 117
P L ++ DS+R++W+ P A + + Y+E + N T +
Sbjct: 5 PKNLVVSEVTEDSLRLSWTAPDAAFD-----SFMIQYQESE-KVGEAINLTVPGSERS-- 56
Query: 118 GVATLTGLRKYRKYDIVVQAFNEKGPGPMSSEVSVQTLEDVPAAPP 163
LTGL+ +Y + + T
Sbjct: 57 --YDLTGLKPGTEYTVSIYGVKGGHRSN-PLSAEFTT---GGHHHH 96
Score = 37.0 bits (86), Expect = 5e-04
Identities = 7/40 (17%), Positives = 17/40 (42%), Gaps = 5/40 (12%)
Query: 162 PPLDITCSALSSTSLSVTWQPPPLLLQNGEILGYKVYYEN 201
P ++ S ++ SL ++W P + + + Y+
Sbjct: 4 APKNLVVSEVTEDSLRLSWTAP-----DAAFDSFMIQYQE 38
Score = 34.7 bits (80), Expect = 0.004
Identities = 10/46 (21%), Positives = 13/46 (28%), Gaps = 1/46 (2%)
Query: 9 SGTEQWAVLQDLLPATLYRVRVLAENSLGAGRPSDPLLVHTEAEPP 54
G+E+ L L P T Y V + P T
Sbjct: 51 PGSERSYDLTGLKPGTEYTVSIYGVKGGHRSNPLS-AEFTTGGHHH 95
>2h41_A Fibronectin; beta sandwich, cell adhesion, structural protein; NMR
{Homo sapiens} PDB: 2h45_A
Length = 95
Score = 51.7 bits (124), Expect = 3e-09
Identities = 18/98 (18%), Positives = 31/98 (31%), Gaps = 10/98 (10%)
Query: 57 EPSGLHAVAISSDSIRVTWSPPPAHLTNGDLLGYYLGYREQGFGRQNSYNFTTIPNRSDG 116
+ I++ S V+W ++ G+ + Y G + Y S
Sbjct: 8 VATSESVTEITASSFVVSWVSASDTVS-----GFRVEYELSEEGDEPQYLDLPSTATS-- 60
Query: 117 AGVATLTGLRKYRKYDIVVQAFNEKGPGPMSSEVSVQT 154
+ L RKY + V +E G + S T
Sbjct: 61 ---VNIPDLLPGRKYIVNVYQISEDGEQSLILSTSQTT 95
Score = 36.7 bits (85), Expect = 7e-04
Identities = 7/39 (17%), Positives = 17/39 (43%), Gaps = 5/39 (12%)
Query: 162 PPLDITCSALSSTSLSVTWQPPPLLLQNGEILGYKVYYE 200
+ + ++++S V+W + G++V YE
Sbjct: 8 VATSESVTEITASSFVVSWVSAS-----DTVSGFRVEYE 41
Score = 34.8 bits (80), Expect = 0.004
Identities = 9/34 (26%), Positives = 11/34 (32%)
Query: 9 SGTEQWAVLQDLLPATLYRVRVLAENSLGAGRPS 42
T + DLLP Y V V + G
Sbjct: 55 PSTATSVNIPDLLPGRKYIVNVYQISEDGEQSLI 88
>2ic2_A CG9211-PA, GH03927P; IHOG, hedgehog, fibronectin type III, protein
binding; HET: MSE; 1.30A {Drosophila melanogaster} SCOP:
b.1.2.1
Length = 115
Score = 51.8 bits (124), Expect = 4e-09
Identities = 16/99 (16%), Positives = 32/99 (32%), Gaps = 9/99 (9%)
Query: 58 PSGLHAVAISSDSIRVTWSPPPAHLTNGDLLGYYLGYREQGFGRQNSYNFTTIPNRSDGA 117
P+ + +S +S+ + W P ++ + + YR G + IP
Sbjct: 6 PTPPNVTRLSDESVMLRWMVPRND--GLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPKW 63
Query: 118 GV-------ATLTGLRKYRKYDIVVQAFNEKGPGPMSSE 149
A++T L+ Y + A S+
Sbjct: 64 NSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNT 102
Score = 40.7 bits (95), Expect = 4e-05
Identities = 12/44 (27%), Positives = 17/44 (38%)
Query: 1 DVEWKSQNSGTEQWAVLQDLLPATLYRVRVLAENSLGAGRPSDP 44
+ G A + DL P YR R+LA S + S+
Sbjct: 59 GKPKWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNT 102
Score = 33.4 bits (76), Expect = 0.016
Identities = 11/38 (28%), Positives = 16/38 (42%), Gaps = 2/38 (5%)
Query: 162 PPLDITCSALSSTSLSVTWQPPPLLLQNGEILGYKVYY 199
PP + LS S+ + W P I+ +KV Y
Sbjct: 5 PPTPPNVTRLSDESVMLRWMVPR--NDGLPIVIFKVQY 40
>2erj_C Cytokine receptor common gamma chain; immune system-cytok complex;
HET: NAG FUC BMA; 3.00A {Homo sapiens} SCOP: b.1.2.1
b.1.2.1
Length = 247
Score = 52.9 bits (126), Expect = 8e-09
Identities = 28/178 (15%), Positives = 49/178 (27%), Gaps = 13/178 (7%)
Query: 25 LYRVRVLAENSLGAGRPSDPL--LVHTEAEPPTAEPSGLHAVAISSDSIRVTWSPPP-AH 81
L +L N L + T + + + + TW
Sbjct: 5 LLNTTILTPNGNEDTTADFFLTTMPTDSLSVSTLPLPEVQCFVFNVEYMNCTWQSSSEPQ 64
Query: 82 LTNGDLLGYYLGYREQGFGRQNSYNFTTIPNRSDGAGVATLTGLRKYRKYDIVVQAFNEK 141
TN L +Y + + Y F+ L + VVQ + +
Sbjct: 65 PTNLTLHYWYKNSDNDKVQKCSHYLFSEEITSG-----CQLQKKEIHLYQTFVVQLQDPR 119
Query: 142 GPGPMSSEVSVQTLEDVPAAPPLDITCSALSSTSLSVTWQPPPLLLQNGEILGYKVYY 199
P + ++ V P ++T LS + L + W L + V Y
Sbjct: 120 EPR-RQATQMLKLQNLVIPWAPENLTLHKLSESQLELNWNNRF----LNHCLEHLVQY 172
Score = 34.8 bits (79), Expect = 0.013
Identities = 13/68 (19%), Positives = 19/68 (27%), Gaps = 8/68 (11%)
Query: 1 DVEWKSQNSGTEQWAVLQDLLPATLYRVRVLAENSLGAGRP------SDPLLVHTEAEPP 54
D W Q+ L + Y RV + + G S P +H +
Sbjct: 177 DHSWTEQSVDYRHKFSLPSVDGQKRYTFRVRSRFNPLCGSAQHWSEWSHP--IHWGSNTS 234
Query: 55 TAEPSGLH 62
P H
Sbjct: 235 KENPRTGH 242
Score = 28.6 bits (63), Expect = 1.2
Identities = 10/66 (15%), Positives = 17/66 (25%)
Query: 139 NEKGPGPMSSEVSVQTLEDVPAAPPLDITCSALSSTSLSVTWQPPPLLLQNGEILGYKVY 198
NE V P ++ C + ++ TWQ L Y
Sbjct: 16 NEDTTADFFLTTMPTDSLSVSTLPLPEVQCFVFNVEYMNCTWQSSSEPQPTNLTLHYWYK 75
Query: 199 YENMRE 204
+ +
Sbjct: 76 NSDNDK 81
>3qt2_A Interleukin-5 receptor subunit alpha; cytokine type I receptor
fold, fibronectin type III modules, helical bundle,
cytokine, ligand-receptor complex; HET: BGC; 2.55A {Homo
sapiens}
Length = 317
Score = 53.0 bits (126), Expect = 1e-08
Identities = 33/201 (16%), Positives = 59/201 (29%), Gaps = 19/201 (9%)
Query: 17 LQDLLPATLYRVRVLAEN--SLGAGRPSDPLLVHTEAEPPTA----------EPSGLHAV 64
+ L VR + +N SL A + L P T+ +
Sbjct: 69 VTILHMGFSASVRTILQNDHSLLASSWASAELHAPPGSPGTSIVNLTCTTNTTEDNYSRL 128
Query: 65 AISSDSIRVTWSPPPAHLTNGDLLGYYLGYREQGFGRQ-NSYNFTTIPNRSDGAGVATLT 123
S+ TW + Y+L YR + + Y+ T+ T
Sbjct: 129 RSYQVSLHCTWMVGT---DAPEDTQYFLYYRYGSWTEECQEYSMDTLGRNIACWFPRTFI 185
Query: 124 GLRKYRKYDIVVQAFNEKGPGPMSSEVSVQTLEDVPAAPPLDITCSALSSTSLSVTWQPP 183
+ ++V ++ + PPL++T + T +S+ W+ P
Sbjct: 186 LSKGRDWLAVLVNGSSKHSAIR-PFDQLFALHAIDQINPPLNVTAE-IEGTRMSIQWEKP 243
Query: 184 PLLLQNGEILGYKVYYENMRE 204
Y+V N R
Sbjct: 244 V-SAFPIHCFDYEVKIHNTRN 263
Score = 50.3 bits (119), Expect = 1e-07
Identities = 25/159 (15%), Positives = 36/159 (22%), Gaps = 9/159 (5%)
Query: 50 EAEPPTAEPSGLHAVAISSDSIRVTWSPPPAHLTNGDLLGYYLGYREQGFGR----QNSY 105
+ + P + + W P P L Y +
Sbjct: 7 DEKISLLPPVNFTIKVTGLAQVLLQWKPNPDQEQRNVNLEYQVKINAPKEDDYETRITES 66
Query: 106 NFTTIPNRSDGAGVATLTGLRKYRKYDIVVQAFNEKGPGPMSSEVSVQTLEDVPAAPPLD 165
TI + A V T+ A E P S S+ L +
Sbjct: 67 KAVTILHMGFSASVRTILQNDHSLLASSWASA--ELHAPPGSPGTSIVNLTCTTNTTEDN 124
Query: 166 ITCSALSSTSLSVTWQPPPLLLQNGEILGYKVYYENMRE 204
+ SL TW E Y +YY
Sbjct: 125 YSRLRSYQVSLHCTWMVGT---DAPEDTQYFLYYRYGSW 160
Score = 41.0 bits (95), Expect = 1e-04
Identities = 20/112 (17%), Positives = 32/112 (28%), Gaps = 12/112 (10%)
Query: 26 YRVRVLAENSLGAGRPSDPLLVHTEAEPPTAEPSGLHAVAISSDSIRVTWSPPPAHLTNG 85
V V + A RP D L + P + I + + W P +
Sbjct: 193 LAVLVNGSSKHSAIRPFDQLFALHAIDQINP-PLNVT-AEIEGTRMSIQWEKPVSAF-PI 249
Query: 86 DLLGYYLGYREQGFGRQNSYNFTTIPNRSDGAGVATLTGLRKYRKYDIVVQA 137
Y + G T A ++ + KYD+ V+A
Sbjct: 250 HCFDYEVKIHNTRNGYLQIEKLMTN---------AFISIIDDLSKYDVQVRA 292
>2b5i_B Interleukin-2 receptor beta chain; four-helix bundle, fibronectin
domain, cytokine-cytokine REC complex; HET: NAG; 2.30A
{Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 3qaz_B*
2erj_B*
Length = 214
Score = 52.1 bits (124), Expect = 1e-08
Identities = 25/152 (16%), Positives = 45/152 (29%), Gaps = 12/152 (7%)
Query: 18 QDLLPATLYRVRVLAENSLGAGRPSDPLLVHTEAEPPTAEPSGLHAVAISSDSIRVTWSP 77
Q L + +RVL + + E A P L V + + ++W
Sbjct: 70 QKLTTVDIVTLRVLCREGVRWRVMAIQDFKPFENLRLMA-PISLQVVHVETHRCNISWEI 128
Query: 78 PPAHLTNGDLLGYYLGYREQGFGRQNSYNFTTIPNRSDGAGVATLTGLRKYRKYDIVVQA 137
A L + G +++ + L L +Y+ V+
Sbjct: 129 SQASHYFERHLEFEARTLSPG----HTWEEAPLLTLKQKQEWICLETLTPDTQYEFQVRV 184
Query: 138 FNEKGPGPM----SSEVSVQTLEDVPAAPPLD 165
+G S ++ +T PAA D
Sbjct: 185 KPLQGEFTTWSPWSQPLAFRTK---PAALGKD 213
Score = 39.8 bits (92), Expect = 3e-04
Identities = 14/132 (10%), Positives = 34/132 (25%), Gaps = 13/132 (9%)
Query: 74 TWSPPPAHLTNGDLLGYYLGYREQG------FGRQNSYNFTTIPNRSDGAGVATLTGLRK 127
WS A + + R Q S+ I D + T
Sbjct: 21 VWSQDGALQDTSCQVHAWPDRRRWQQTCELLPVSQASWACNLILGAPDSQKLTT------ 74
Query: 128 YRKYDIVVQAFNEKGPGPMSSEVSVQTLEDVPAAPPLDITCSALSSTSLSVTWQPPPLLL 187
+ V + + + E++ P+ + + + +++W+
Sbjct: 75 VDIVTLRVLCREGVRW-RVMAIQDFKPFENLRLMAPISLQVVHVETHRCNISWEISQASH 133
Query: 188 QNGEILGYKVYY 199
L ++
Sbjct: 134 YFERHLEFEART 145
Score = 34.8 bits (79), Expect = 0.010
Identities = 13/62 (20%), Positives = 21/62 (33%), Gaps = 8/62 (12%)
Query: 4 WKSQN----SGTEQWAVLQDLLPATLYRVRVLAENSLGAGRP----SDPLLVHTEAEPPT 55
W+ ++W L+ L P T Y +V + G S PL T+
Sbjct: 152 WEEAPLLTLKQKQEWICLETLTPDTQYEFQVRVKPLQGEFTTWSPWSQPLAFRTKPAALG 211
Query: 56 AE 57
+
Sbjct: 212 KD 213
>1v5j_A KIAA1355 protein, RSGI RUH-008; FN3 domain, human cDNA, structural
genomics, riken structural genomics/proteomics
initiative, cell adhesion; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 108
Score = 47.2 bits (112), Expect = 2e-07
Identities = 23/111 (20%), Positives = 37/111 (33%), Gaps = 8/111 (7%)
Query: 49 TEAEPPTAEPSGLHAVAISSDSIRVTWSPPPAHLTNGDLLGYYLGYREQGFGRQNSYNFT 108
+ + P GL AV + + + W PP L GY L R+ G +
Sbjct: 2 SSGSSGLSPPRGLVAV-RTPRGVLLHWDPPELV--PKRLDGYVLEGRQ-GSQGWEVLDPA 57
Query: 109 TIPNRSDGAGVATLTGLRKYRKYDIVVQAFNEKGPGPMSSEVSVQTLEDVP 159
++ + GL K Y+ + AF S+ +V T
Sbjct: 58 VAGTETE----LLVPGLIKDVLYEFRLVAFAGSFVSDPSNTANVSTSGLSG 104
Score = 44.5 bits (105), Expect = 1e-06
Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 4/58 (6%)
Query: 3 EWKSQNS---GTEQWAVLQDLLPATLYRVRVLAENSLGAGRPSDPLLVHTEAE-PPTA 56
W+ + GTE ++ L+ LY R++A PS+ V T P++
Sbjct: 50 GWEVLDPAVAGTETELLVPGLIKDVLYEFRLVAFAGSFVSDPSNTANVSTSGLSGPSS 107
Score = 26.4 bits (58), Expect = 3.0
Identities = 8/41 (19%), Positives = 15/41 (36%), Gaps = 3/41 (7%)
Query: 157 DVPAAPPLDITCSALSSTSLSVTWQPPPLLLQNGEILGYKV 197
+PP + + + + W PP L + GY +
Sbjct: 5 SSGLSPPRGLVAVR-TPRGVLLHWDPPE--LVPKRLDGYVL 42
>2crz_A Fibronectin type-III domain containing protein 3A; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 110
Score = 46.9 bits (112), Expect = 2e-07
Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 3 EWKSQNSGTEQWAVLQDLLPATLYRVRVLAENSLGAGRPSDPLLVHTEAE-PPTA 56
E + G+E + LLP Y R+ A N +G G S+ + T P++
Sbjct: 55 EPREVYQGSEVECTVSSLLPGKTYSFRLRAANKMGFGPFSEKCDITTAPGSGPSS 109
Score = 46.6 bits (111), Expect = 3e-07
Identities = 22/118 (18%), Positives = 40/118 (33%), Gaps = 17/118 (14%)
Query: 49 TEAEPPTAEPSGLHAVA-ISSDSIRVTWSPPPAHLTNG--DLLGYYLGYREQGFGRQNSY 105
+ PP + I++ W PP L +G + Y +
Sbjct: 4 GSSGPPGP-CLPPRLQGRPKAKEIQLRWGPP---LVDGGSPISCYSVEMSPIE-----KD 54
Query: 106 NFTTIPNRSDGAGVATLTGLRKYRKYDIVVQAFNEKGPGPMSSEVSVQTLEDVPAAPP 163
+ S+ T++ L + Y ++A N+ G GP S + + T P + P
Sbjct: 55 EPREVYQGSEVE--CTVSSLLPGKTYSFRLRAANKMGFGPFSEKCDITTA---PGSGP 107
Score = 27.7 bits (62), Expect = 1.3
Identities = 11/47 (23%), Positives = 16/47 (34%), Gaps = 6/47 (12%)
Query: 154 TLEDVPAAPPLDITCSAL-SSTSLSVTWQPPPLLLQNG--EILGYKV 197
+ P P L + + + W PP L +G I Y V
Sbjct: 3 SGSSGPPGPCLPPRLQGRPKAKEIQLRWGPP---LVDGGSPISCYSV 46
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 49.9 bits (118), Expect = 2e-07
Identities = 31/208 (14%), Positives = 61/208 (29%), Gaps = 64/208 (30%)
Query: 31 LAENSLGAGRPSDPLL----VHTEAEPPTAEPSGLHAVAISSDSIRVTWSPPPAHLTNGD 86
L + SL +P + + ++ E + LH + +I T+ D
Sbjct: 411 LHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLD 470
Query: 87 LLGY---YLGY---------REQGFGR--QNSYNF-------TTIPNRSDGAGVATLTGL 125
Y ++G+ R F + + F + + G+ + TL L
Sbjct: 471 --QYFYSHIGHHLKNIEHPERMTLFRMVFLD-FRFLEQKIRHDSTAWNASGSILNTLQQL 527
Query: 126 RKYRKYDIVVQAFNEKGPGPMSSEVSVQTLED-VPAA-------PPLDITCSALSSTSLS 177
+ Y+ Y + P E V + D +P D+ AL
Sbjct: 528 KFYKPY------ICDNDPKY---ERLVNAILDFLPKIEENLICSKYTDLLRIAL------ 572
Query: 178 VTWQPPPLLLQNGEILGYKVYYENMREL 205
+ I + E +++
Sbjct: 573 ---MAE-----DEAI-----FEEAHKQV 587
>2csp_A RIM-BP2, RIM binding protein 2; FN3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 130
Score = 47.4 bits (112), Expect = 2e-07
Identities = 27/134 (20%), Positives = 42/134 (31%), Gaps = 5/134 (3%)
Query: 38 AGRPSDPLLVHTEAEPPTAEPSGLHAVAISSD-SIRVTWSPPPAHLTNGDLLGYYLGYRE 96
S + T P A P + A + +IRV+W PP T GY
Sbjct: 1 GSSGSSGVEFSTLPAGPPAPPQDVTVQAGVTPATIRVSWRPPVLTPTGLSNGANVTGYGV 60
Query: 97 QGFGRQNSYNFTTIPNRSDGAGVATLTGLRKYRKYDIVVQAFNEKGPGPMSSEVSVQTLE 156
G+ + + + L LR + V+ + +G S+ +V
Sbjct: 61 YAKGQ----RVAEVIFPTADSTAVELVRLRSLEAKGVTVRTLSAQGESVDSAVAAVPPEL 116
Query: 157 DVPAAPPLDITCSA 170
VP P S
Sbjct: 117 LVPPTPHPSGPSSG 130
Score = 42.8 bits (100), Expect = 9e-06
Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Query: 147 SSEVSVQTLEDVPAAPPLDITCSA-LSSTSLSVTWQPP---PLLLQNG-EILGYKVYYEN 201
SS V TL P APP D+T A ++ ++ V+W+PP P L NG + GY VY +
Sbjct: 5 SSGVEFSTLPAGPPAPPQDVTVQAGVTPATIRVSWRPPVLTPTGLSNGANVTGYGVYAKG 64
Score = 27.0 bits (59), Expect = 2.9
Identities = 14/60 (23%), Positives = 18/60 (30%), Gaps = 2/60 (3%)
Query: 2 VEWKSQNSGTEQWAVLQDLLPATLYRVRVLAENSLGAGRPSDPLLV-HTEAEPPTAEPSG 60
E + + L L V V ++ G S V PPT PSG
Sbjct: 68 AEVIFPTADSTAV-ELVRLRSLEAKGVTVRTLSAQGESVDSAVAAVPPELLVPPTPHPSG 126
>1iar_B Protein (interleukin-4 receptor alpha chain); cytokine
receptor,interleukin-4, cytokine/receptor complex; 2.30A
{Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 3bpl_B*
3bpn_B* 3bpo_B*
Length = 207
Score = 47.3 bits (112), Expect = 5e-07
Identities = 29/148 (19%), Positives = 44/148 (29%), Gaps = 16/148 (10%)
Query: 18 QDLLPATLYRVRVLAENSLGAGRPSDPL-LVHTEAEPPTAEPSGLHAVAISSDSIRVTWS 76
D++ A Y + + A L P V A P L SD++ +TWS
Sbjct: 66 DDVVSADNYTLDLWAGQQLLWKGSFKPSEHVKPRA------PGNLTVHTNVSDTLLLTWS 119
Query: 77 PP-PAHLTNGDLLGYYLGYR-EQGFGRQNSYNFTTIPNRSDGAGVATLTGLRKYRKYDIV 134
P P + L Y + E YN T + + L+ Y
Sbjct: 120 NPYPPDNYLYNHLTYAVNIWSENDPADFRIYNVTYLEPSL----RIAASTLKSGISYRAR 175
Query: 135 VQAFNEKGPGP---MSSEVSVQTLEDVP 159
V+A+ + S P
Sbjct: 176 VRAWAQAYNTTWSEWSPSTKWHNSYREP 203
Score = 36.6 bits (84), Expect = 0.003
Identities = 19/132 (14%), Positives = 35/132 (26%), Gaps = 9/132 (6%)
Query: 74 TWSPPPAHLTNGDLLGYYLGYREQGFGRQNSYNFTTIPNRSDGAGVATLTGLRKYRKYDI 133
W L Y+ + + + + Y +
Sbjct: 20 EWKMNGPT---NCSTELRLLYQLVFLLSEAHTCIPENNGGAGCVCHLLMDDVVSADNYTL 76
Query: 134 VVQAFNEKGPGPMSSEVSVQTLEDVPAAPPLDITCSALSSTSLSVTWQPP-PLLLQNGEI 192
+ A + + S + E V P ++T S +L +TW P P
Sbjct: 77 DLWAGQ-----QLLWKGSFKPSEHVKPRAPGNLTVHTNVSDTLLLTWSNPYPPDNYLYNH 131
Query: 193 LGYKVYYENMRE 204
L Y V + +
Sbjct: 132 LTYAVNIWSEND 143
Score = 34.6 bits (79), Expect = 0.011
Identities = 9/58 (15%), Positives = 12/58 (20%), Gaps = 3/58 (5%)
Query: 3 EWKSQNSGTEQWAVLQDLLPATLYRVRVLAENSLGAGRPSD---PLLVHTEAEPPTAE 57
+ L YR RV A S+ H P +
Sbjct: 149 IYNVTYLEPSLRIAASTLKSGISYRARVRAWAQAYNTTWSEWSPSTKWHNSYREPFEQ 206
>1eer_B Epobp, erythropoietin receptor; signal transduction, hematopoietic
cytokine, cytokine receptor class 1, complex
(cytokine/receptor); 1.90A {Homo sapiens} SCOP: b.1.2.1
b.1.2.1 PDB: 1cn4_A 2jix_B 1eba_A* 1ern_A 1ebp_A
Length = 227
Score = 47.4 bits (112), Expect = 6e-07
Identities = 20/148 (13%), Positives = 37/148 (25%), Gaps = 9/148 (6%)
Query: 41 PSDPLLVHTEAEPPTAEPSGLHAVAISSDSIRVTWSPPPAHLTNGDLLGYYLGYREQGFG 100
DP A P L + + W + Y Y+ +
Sbjct: 7 NPDPKFESKAALLAARGPEELLCFTERLEDLVCFWEEAAS--AGVGPGQYSFSYQLEDEP 64
Query: 101 RQNSYNFTTIPNRSDGAGVATL--TGLRKYRKYDIVVQAFNEKGPGPMSSEVSVQTLEDV 158
+ R +L + ++ V A + G + E V
Sbjct: 65 WKLCRLHQAPTARGAVRFWCSLPTADTSSFVPLELRVTAAS----GAPRYHRVIHINEVV 120
Query: 159 PAAPPLDITCSALSSTS-LSVTWQPPPL 185
P+ + + + + W PPP
Sbjct: 121 LLDAPVGLVARLADESGHVVLRWLPPPE 148
Score = 32.0 bits (72), Expect = 0.10
Identities = 10/63 (15%), Positives = 15/63 (23%), Gaps = 2/63 (3%)
Query: 142 GPGPMSSEVSVQTLEDVPAAPPLDITCSALSSTSLSVTWQPPPLLLQNGEILGYKVYYEN 201
P P + A P ++ C L W+ Y Y+
Sbjct: 3 FPPPNPDPKFESKAALLAARGPEELLCFTERLEDLVCFWEEAA--SAGVGPGQYSFSYQL 60
Query: 202 MRE 204
E
Sbjct: 61 EDE 63
Score = 27.4 bits (60), Expect = 2.8
Identities = 13/61 (21%), Positives = 20/61 (32%), Gaps = 8/61 (13%)
Query: 3 EWKSQNSGTEQWAVLQDLLPATLY--RVRVLAENSLGAGRPSD---PLLVHTEAEPPTAE 57
+ + VL +L T Y VR G S+ P+ + T P +
Sbjct: 170 VQRVEILEGRTECVLSNLRGRTRYTFAVRARMAEPSFGGFWSEWSEPVSLLT---PSDLD 226
Query: 58 P 58
P
Sbjct: 227 P 227
>2yux_A Myosin-binding protein C, SLOW-type; fibronectin III domain,
structural genomics., NPPSFA; NMR {Homo sapiens}
Length = 120
Score = 45.8 bits (109), Expect = 7e-07
Identities = 20/112 (17%), Positives = 40/112 (35%), Gaps = 11/112 (9%)
Query: 52 EPPTAEPSGLHAVAISSDSIRVTWSPPPAHLTNGDLLGYYLGYREQGFGRQNSYNFTTIP 111
+ P P + + +++ +TW+PP N + GY + ++ +
Sbjct: 16 DRPGP-PQIVKIEDVWGENVALTWTPPKDD-GNAAITGYTIQKADK--KSMEWFTVIEHY 71
Query: 112 NRSDGAGVATLTGLRKYRKYDIVVQAFNEKGPGPMSSEVSVQTLEDVPAAPP 163
+R+ AT+T L +Y V + N G ++ V A
Sbjct: 72 HRT----SATITELVIGNEYYFRVFSENMCGLSEDATMTKESA---VIARDG 116
Score = 42.0 bits (99), Expect = 1e-05
Identities = 12/72 (16%), Positives = 23/72 (31%), Gaps = 17/72 (23%)
Query: 2 VEWKSQNSGTEQW-----------AVLQDLLPATLYRVRVLAENSLGAGRPSDPLLVHTE 50
++ + S W A + +L+ Y RV +EN G + T+
Sbjct: 54 IQKADKKSME--WFTVIEHYHRTSATITELVIGNEYYFRVFSENMCGLSEDATM----TK 107
Query: 51 AEPPTAEPSGLH 62
A ++
Sbjct: 108 ESAVIARDGKIY 119
Score = 34.3 bits (79), Expect = 0.008
Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 7/56 (12%)
Query: 144 GPMSSEVSVQTLEDVPAAPPLDITCSALSSTSLSVTWQPPPLLLQNG--EILGYKV 197
G + + +Q + D P PP + + ++++TW PP +G I GY +
Sbjct: 4 GSSGASIDIQII-DRPG-PPQIVKIEDVWGENVALTWTPPK---DDGNAAITGYTI 54
>2b5i_C Cytokine receptor common gamma chain; four-helix bundle,
fibronectin domain, cytokine-cytokine REC complex; HET:
NAG; 2.30A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB:
3bpl_C* 3qb7_C* 3qaz_C*
Length = 199
Score = 46.3 bits (109), Expect = 1e-06
Identities = 23/145 (15%), Positives = 43/145 (29%), Gaps = 11/145 (7%)
Query: 61 LHAVAISSDSIRVTWSPPP-AHLTNGDLLGYYLGYREQGFGRQNSYNFTTIPNRSDGAGV 119
+ + + + TW TN L +Y + + Y F+
Sbjct: 5 VQCFVFNVEYMNCTWQSSSEPQPTNLTLHYWYKNSDNDKVQKCSHYLFSEEITSG----- 59
Query: 120 ATLTGLRKYRKYDIVVQAFNEKGPGPMSSEVSVQTLEDVPAAPPLDITCSALSSTSLSVT 179
L + VVQ + + P + ++ V P ++T LS + L +
Sbjct: 60 CQLQKKEIHLYQTFVVQLQDPREPR-RQATQMLKLQNLVIPWAPENLTLHKLSESQLELN 118
Query: 180 WQPPPLLLQNGEILGYKVYYENMRE 204
W L + V Y +
Sbjct: 119 WNNRF----LNHCLEHLVQYRTDWD 139
Score = 33.6 bits (76), Expect = 0.027
Identities = 9/46 (19%), Positives = 12/46 (26%), Gaps = 3/46 (6%)
Query: 1 DVEWKSQNSGTEQWAVLQDLLPATLYRVRV---LAENSLGAGRPSD 43
D W Q+ L + Y RV A S+
Sbjct: 139 DHSWTEQSVDYRHKFSLPSVDGQKRYTFRVRSRFNPLCGSAQHWSE 184
>3mpc_A FN3-like protein; fibronectin, FN(III), unknown function; 1.60A
{Clostridium thermocellum}
Length = 103
Score = 43.9 bits (104), Expect = 2e-06
Identities = 27/103 (26%), Positives = 38/103 (36%), Gaps = 14/103 (13%)
Query: 53 PPTAEPSGLHAVAISSD-SIRVTWSPPPAHLTNGDLLGYYLGYREQGFGRQNSYNFTTIP 111
P P+GL AV SS + +TW+ P Y + + G +TTI
Sbjct: 4 APAF-PTGLSAVLDSSGNTANLTWNAAP------GANSYNVKRSTKSGG-----PYTTIA 51
Query: 112 NRSDGAGVATLTGLRKYRKYDIVVQAFNEKGPGPMSSEVSVQT 154
T TG+ KY VV A + S+E +Q
Sbjct: 52 TNITST-NYTDTGVATGTKYYYVVSAVSNGVETLNSAEAILQY 93
>1k85_A Chitinase A1; fibronectin type III domain, chitin binding domain,
carbohydrase, horizontal gene transfer, hydrolase; NMR
{Bacillus circulans} SCOP: b.1.2.1
Length = 88
Score = 43.4 bits (103), Expect = 2e-06
Identities = 28/103 (27%), Positives = 46/103 (44%), Gaps = 18/103 (17%)
Query: 53 PPTAEPSGLHAVAISSDSIRVTWSPPPAHLTNGDLLGYYLGYREQGFGRQNSYNFTTIPN 112
PTA P+ L + A ++ SI ++W+ N + GY + Y + TT+
Sbjct: 3 APTA-PTNLASTAQTTSSITLSWTASTD---NVGVTGYDV-YN-------GTALATTVTG 50
Query: 113 RSDGAGVATLTGLRKYRKYDIVVQAFNEKG-PGPMSSEVSVQT 154
+ AT++GL Y V+A + G S+ VSV+T
Sbjct: 51 TT-----ATISGLAADTSYTFTVKAKDAAGNVSAASNAVSVKT 88
Score = 29.9 bits (68), Expect = 0.17
Identities = 11/40 (27%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
Query: 159 PAAPPLDITCSALSSTSLSVTWQPPPLLLQNGEILGYKVY 198
P AP ++ +A +++S++++W N + GY VY
Sbjct: 4 PTAP-TNLASTAQTTSSITLSWTAST---DNVGVTGYDVY 39
>3dlq_R Interleukin-22 receptor subunit alpha-1; cytokine-receptor complex,
fibronectin-III, cytokine, glycoprotein, polymorphism,
secreted, membrane; 1.90A {Homo sapiens} PDB: 3dgc_R*
Length = 211
Score = 45.1 bits (106), Expect = 3e-06
Identities = 25/154 (16%), Positives = 54/154 (35%), Gaps = 10/154 (6%)
Query: 52 EPPTAEPSGLHAVAISSDSIRVTWSPPPAHLTNGDLLGYYLGYREQGFGRQNSYNFTTIP 111
E P+ + + + ++I +TW P + Y + Y + +G ++
Sbjct: 2 EDPSDLLQHVKFQSSNFENI-LTWDSGPEGTPD---TVYSIEY--KTYGERDWVAKKGCQ 55
Query: 112 NRSDGAGVATLTGLRKYRKYDIVVQAFNEKGPGPMSSEVSVQTLEDVPAAPPLDITCSAL 171
+ + T+ Y V A + G +L+ PP D+TC +
Sbjct: 56 RITRKSCNLTVETGNLTELYYARVTAVSAGGRSATKMTDRFSSLQHTTLKPP-DVTCIS- 113
Query: 172 SSTSLSVTWQPPPLLL--QNGEILGYKVYYENMR 203
S+ + P P + +G L + + ++
Sbjct: 114 KVRSIQMIVHPTPTPIRAGDGHRLTLEDIFHDLF 147
>2w1n_A O-GLCNACASE NAGJ; hexosaminidase, glycoside hydrolase, fibronectin
type-III, beta-N-acetylglucosaminidase, cohesin,
hydrolase; 1.80A {Clostridium perfringens}
Length = 238
Score = 44.5 bits (104), Expect = 6e-06
Identities = 21/122 (17%), Positives = 43/122 (35%), Gaps = 14/122 (11%)
Query: 33 ENSLGAGRPSDPLLVHTEAEPPTAEPSGLHAVAISSDSIRVTWSPPPAHLTNGDLLGYYL 92
+ + + ++ T E A I+ ++ VTW+ P T L GY L
Sbjct: 129 VHEIAGTEKTVNIIEGTSPEIVVNPVRDFKASEINKKNVTVTWTEP---ETTEGLEGYIL 185
Query: 93 GYREQGFGRQNSYNFTTIPNRSDGAGVATLTGLRKYRKYDIVVQAFNEKGPGPMSSEVSV 152
Y++ + + T+ T L ++ Y+ + A G +++
Sbjct: 186 -YKDGKKVAEIGKDETS----------YTFKKLNRHTIYNFKIAAKYSNGEVSSKESLTL 234
Query: 153 QT 154
+T
Sbjct: 235 RT 236
Score = 33.4 bits (75), Expect = 0.037
Identities = 28/198 (14%), Positives = 62/198 (31%), Gaps = 16/198 (8%)
Query: 6 SQNSGTEQWAVLQDLLPATLYRVRVLAENSLGAGRPSDPLLVHTEAEPPTAEPSGLHAVA 65
++ +G+ L+++ V V + + A + ++ + A
Sbjct: 10 AEVTGSVSLEALEEVQVGENIEVGVGIDELVNAEAFAYDFTLNYDENAFEYVE------A 63
Query: 66 ISSDSIRVTWSPPPAHLTNGDLLGYYLGYREQGFGRQNSYNFTTIPNRSDGAGVATLTGL 125
IS D + V + +G + L G + R++ + +
Sbjct: 64 ISDDGVFVNAKK----IEDGKVRV--LVSSLTGEPLPAKEVLAKVVLRAEAKTEGSNLSV 117
Query: 126 RKYRKYDIVVQAFNEKGPGPMSSEVSVQTLEDVPAAPPLDITCSALSSTSLSVTWQPPPL 185
D G + + + E V P D S ++ +++VTW P
Sbjct: 118 TNSSVGDGEGLVHEIAGTEKTVNIIEGTSPEIVVN-PVRDFKASEINKKNVTVTWTEP-- 174
Query: 186 LLQNGEILGYKVYYENMR 203
+ GY +Y + +
Sbjct: 175 -ETTEGLEGYILYKDGKK 191
Score = 33.0 bits (74), Expect = 0.046
Identities = 10/50 (20%), Positives = 20/50 (40%)
Query: 1 DVEWKSQNSGTEQWAVLQDLLPATLYRVRVLAENSLGAGRPSDPLLVHTE 50
D + ++ E + L T+Y ++ A+ S G + L + T
Sbjct: 188 DGKKVAEIGKDETSYTFKKLNRHTIYNFKIAAKYSNGEVSSKESLTLRTA 237
>1axi_B HGHBP, growth hormone receptor; complex (hormone-receptor), complex
(hormone-receptor) compl; 2.10A {Homo sapiens} SCOP:
b.1.2.1 b.1.2.1 PDB: 1a22_B 1kf9_B 1hwg_B 1hwh_B 3hhr_B
2aew_A
Length = 236
Score = 44.0 bits (103), Expect = 1e-05
Identities = 21/172 (12%), Positives = 48/172 (27%), Gaps = 8/172 (4%)
Query: 34 NSLGAGRPSDPLLVHTEAEPPTAEPSGLHAVAISSDSIRVTWSPPPAHLTNGDLLGYYLG 93
L S + + EP + ++ W+ H T + G
Sbjct: 9 AILSRAPWSLQSVNPGLKTNSSGEPKFTKCRSPERETFSCHWTDEVHHGTKNE--GPIQL 66
Query: 94 YREQGFGRQNSYNFTTIPNRSDGAGVA---TLTGLRKYRKYDIVVQAFNEKG-PGPMSSE 149
+ + ++ + + P+ + + Y I + + S +
Sbjct: 67 FYTRRNTQEWTQEWKECPDYVSAGENSCYFNSSFTSIAIPYCIKLTSNGGTVDEKCFSVD 126
Query: 150 VSVQTLEDVPAAPPLDITCSALSSTSLSVTWQPPPL--LLQNGEILGYKVYY 199
VQ + L + V W+ P + + +L Y++ Y
Sbjct: 127 EIVQPDPPIALNWTLLNVSLTGIHADIQVRWEAPRNADIQKGWMVLEYELQY 178
Score = 29.8 bits (66), Expect = 0.59
Identities = 11/51 (21%), Positives = 18/51 (35%), Gaps = 2/51 (3%)
Query: 1 DVEWKSQNSGTEQWAVLQDLLPATLYRVRVLAENSLGA--GRPSDPLLVHT 49
+ +WK + + L Y VRV ++ G S+ L V
Sbjct: 183 ETKWKMMDPILTTSVPVYSLKVDKEYEVRVRSKQRNSGNYGEFSEVLYVTL 233
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33;
2.40A {Caenorhabditis elegans} PDB: 1koa_A
Length = 573
Score = 44.1 bits (104), Expect = 1e-05
Identities = 20/124 (16%), Positives = 35/124 (28%), Gaps = 26/124 (20%)
Query: 49 TEAEPPTAEPSGLHAVAISSDSIRVTWSPPPAHLTNGDLLGYYLGYREQG--------FG 100
+ P P I +++ ++W PP + Y + RE
Sbjct: 5 ADVPEPEP-PRFPIIENILDEAVILSWKPPA-LDGGSLVTNYTIEKREAMGGSWSPCAKS 62
Query: 101 RQNSYNFTTIPNRSDGAGVATLTGLRKYRKYDIVVQAFNEKGPGPMSSEVS-VQTLEDVP 159
R T+ GLR ++Y+ + A N+ G + V D
Sbjct: 63 RYTYT---------------TIEGLRAGKQYEFRIIAENKHGQSKPCEPTAPVLIPGDER 107
Query: 160 AAPP 163
Sbjct: 108 KRRR 111
Score = 39.4 bits (92), Expect = 4e-04
Identities = 11/60 (18%), Positives = 18/60 (30%)
Query: 1 DVEWKSQNSGTEQWAVLQDLLPATLYRVRVLAENSLGAGRPSDPLLVHTEAEPPTAEPSG 60
W + ++ L Y R++AEN G +P +P G
Sbjct: 53 GGSWSPCAKSRYTYTTIEGLRAGKQYEFRIIAENKHGQSKPCEPTAPVLIPGDERKRRRG 112
Score = 33.7 bits (77), Expect = 0.039
Identities = 12/57 (21%), Positives = 21/57 (36%), Gaps = 9/57 (15%)
Query: 154 TLEDVPAAPPLDITCSALSSTSLSVTWQPPPLLLQNG--EILGYKVYYENMRELPMG 208
P PP + ++ ++W+PP +G + Y + E RE G
Sbjct: 5 ADVPEPE-PPRFPIIENILDEAVILSWKPPA---LDGGSLVTNYTI--E-KREAMGG 54
>3tgx_A Interleukin-21 receptor; class I cytokine, class I cytokine
receptor, sugarbridge, fibronectine domain, signaling,
cytokine-cytokine receptor; HET: MAN FUL NAG BMA FUC;
2.80A {Homo sapiens}
Length = 219
Score = 41.3 bits (96), Expect = 6e-05
Identities = 28/146 (19%), Positives = 41/146 (28%), Gaps = 13/146 (8%)
Query: 26 YRVRVLAENSLGAGRPSDPLLVHTEAEPPTAEPSGLHAVAISSDSIRVTWSPP---PAHL 82
V + G + E+ P P + S +++W PA
Sbjct: 73 DIFSVQITDQSGQYSQECGSFLLAESIKPAP-PFDVTVT--FSGQYQISWRSDYEDPAFY 129
Query: 83 TNGDLLGYYLGYREQGFGRQNSYNFTTIPNRSDGAGVATLTGLRKYRKYDIVVQAFNEKG 142
L Y L YR +G S I S + RK Y++ V+A G
Sbjct: 130 MLKGKLQYELQYRNRGDPWAVSPRRKLISVDSRSVSL-LPLEFRKDSSYELQVRAGPMPG 188
Query: 143 PGPM------SSEVSVQTLEDVPAAP 162
S V QT +
Sbjct: 189 SSYQGTWSEWSDPVIFQTQSEELKEH 214
Score = 33.6 bits (76), Expect = 0.026
Identities = 11/67 (16%), Positives = 21/67 (31%), Gaps = 7/67 (10%)
Query: 2 VEWKSQNSGTEQWAVLQDLLPATLYRVRVLAENSLGAGRP------SDPLLVHTEAEPPT 55
+ + + Y ++V A G+ SDP++ T++E
Sbjct: 153 RRKLISVDSRSVSLLPLEFRKDSSYELQVRAGPMPGSSYQGTWSEWSDPVIFQTQSEEL- 211
Query: 56 AEPSGLH 62
E H
Sbjct: 212 KEHHHHH 218
Score = 33.2 bits (75), Expect = 0.032
Identities = 21/134 (15%), Positives = 36/134 (26%), Gaps = 7/134 (5%)
Query: 74 TWSPPPAHLTNGDLLGYYLGYREQGFGRQNSYNFTTIPNRSDGAGVATLTGLRKYRKYDI 133
H + L + S + N + +
Sbjct: 17 ILEMWNLHPSTLTLTWQDQYEELKDEATSCSL-HRSAHNATHATYTCHMDVFHFMADDIF 75
Query: 134 VVQAFNEKGPGPMSSEVSVQTLEDVPAAPPLDITCSALSSTSLSVTWQPP---PLLLQNG 190
VQ ++ G S E + APP D+T S ++W+ P
Sbjct: 76 SVQITDQSG-QYSQECGSFLLAESIKPAPPFDVT--VTFSGQYQISWRSDYEDPAFYMLK 132
Query: 191 EILGYKVYYENMRE 204
L Y++ Y N +
Sbjct: 133 GKLQYELQYRNRGD 146
>3up1_A Interleukin-7 receptor subunit alpha; cytokine receptor,
fibronectin type 3 fold, membrane and SOL glycosylation,
immune system; HET: NAG FUC NGA; 2.15A {Homo sapiens}
PDB: 3di3_B* 3di2_B*
Length = 223
Score = 40.9 bits (95), Expect = 1e-04
Identities = 18/147 (12%), Positives = 44/147 (29%), Gaps = 11/147 (7%)
Query: 24 TLYRVRVLAENSLGAGRPSDPLLVHTEAEPPTAEPSGLHAVAI-SSDSIRVTWSPPPAHL 82
L + +G + P L V ++ VT++
Sbjct: 83 FLLIGKSNICVKVGEKS-LTCKKIDLTTIVKPEAPFDLSVVYREGANDFVVTFNTSHLQK 141
Query: 83 TNGDLLGYYLGYREQGFGRQNSYNFTTIPNRSDGAGVATLTGLRKYRKYDIVVQAFNEKG 142
+L + + YR++ + ++ + + L+ Y+I V++ +
Sbjct: 142 KYVKVLMHDVAYRQEKDENKWTHVNLSSTKLT-----LLQRKLQPAAMYEIKVRSIPDHY 196
Query: 143 P----GPMSSEVSVQTLEDVPAAPPLD 165
S +T E ++ +D
Sbjct: 197 FKGFWSEWSPSYYFRTPEINNSSGEMD 223
Score = 32.5 bits (73), Expect = 0.066
Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 6/61 (9%)
Query: 3 EWKSQN-SGTEQWAVLQDLLPATLYRVRVLA-ENSLGAGRPSD---PLLVHT-EAEPPTA 56
+W N S T+ + + L PA +Y ++V + + G S+ T E +
Sbjct: 161 KWTHVNLSSTKLTLLQRKLQPAAMYEIKVRSIPDHYFKGFWSEWSPSYYFRTPEINNSSG 220
Query: 57 E 57
E
Sbjct: 221 E 221
Score = 32.5 bits (73), Expect = 0.071
Identities = 9/54 (16%), Positives = 18/54 (33%), Gaps = 1/54 (1%)
Query: 147 SSEVSVQTLEDVPAAPPLDITCSALSST-SLSVTWQPPPLLLQNGEILGYKVYY 199
+ + V P D++ VT+ L + ++L + V Y
Sbjct: 100 LTCKKIDLTTIVKPEAPFDLSVVYREGANDFVVTFNTSHLQKKYVKVLMHDVAY 153
>3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB,
immune system/cytokine complex; 1.90A {Homo sapiens}
SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A*
1f42_A* 1f45_A* 3hmx_A* 3qwr_A*
Length = 306
Score = 37.0 bits (84), Expect = 0.003
Identities = 20/132 (15%), Positives = 35/132 (26%), Gaps = 17/132 (12%)
Query: 26 YRVRVLAENSLGAGRPSDPLLVHTEAEPPTAEPSGLHAVAIS-SDSIRVTWSPPPAHLT- 83
V V A + L P L + S + V+W P T
Sbjct: 186 IEVMVDAVHKLK--YEQYTSSFFIRDIIKPDPPKNLQLKPLKNSRQVEVSWEYPDTWSTP 243
Query: 84 -NGDLLGYYLGYREQGFGRQNSYNFTTIPNRSDGAGVATLTGLRKYRKYDIVVQAFNEKG 142
+ L + + + + + FT T + + I V+A +
Sbjct: 244 HSYFSLTFCVQVQGKSKREKKDRVFTD----------KTSATVICRKNASISVRAQDRYY 293
Query: 143 PGPMS--SEVSV 152
S + V
Sbjct: 294 SSSWSEWASVPC 305
Score = 28.9 bits (63), Expect = 1.2
Identities = 13/125 (10%), Positives = 32/125 (25%), Gaps = 11/125 (8%)
Query: 69 DSIRVTWSPPPAHLTNGDLLGYYLGYREQGF--------GRQNSYNFTTIPNRSDGAGVA 120
W + + QG + + + +
Sbjct: 116 GRFTCWWLTTISTDLTFSVKSSRGSSDPQGVTCGAATLSAERVRGDNKEYEYSVECQEDS 175
Query: 121 TLTGLRKYRKYDIVVQAFNEKGPGPMSSEVSVQTLEDVPAAPPLDITCSALS-STSLSVT 179
+ +++V A ++ S + + PP ++ L S + V+
Sbjct: 176 ACPAAEESLPIEVMVDAVHK--LKYEQYTSSFFIRDIIKPDPPKNLQLKPLKNSRQVEVS 233
Query: 180 WQPPP 184
W+ P
Sbjct: 234 WEYPD 238
Score = 27.8 bits (60), Expect = 2.6
Identities = 5/43 (11%), Positives = 14/43 (32%), Gaps = 3/43 (6%)
Query: 1 DVEWKSQNSGTEQWAVLQDLLPATLYRVRVLAENSLGAGRPSD 43
E K + + ++ + V A++ + S+
Sbjct: 260 KREKKDRVFTDKT---SATVICRKNASISVRAQDRYYSSSWSE 299
>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function;
1.80A {Homo sapiens} PDB: 3ch8_A
Length = 195
Score = 36.1 bits (82), Expect = 0.003
Identities = 30/152 (19%), Positives = 56/152 (36%), Gaps = 11/152 (7%)
Query: 2 VEWKSQNSGTEQWAVLQDLLPATLYRVRVLAENSLGAGR-PSDPLLVHTEAEPPTAEPSG 60
S + AV + ++ E GA + + + ++ P+
Sbjct: 50 ANGYSFINIEHGQAVSLLKTFQNTVELIIVREVGNGAKQEIRVRVEKDGGSGGVSSVPTN 109
Query: 61 LHAVAISSDSIRVTWSPPPAHLTNGDLLGYYLGYREQGFGRQNSYNFTTIPNRSDGAGVA 120
L VA + S+ ++W ++ Y + Y E G G FT + S A
Sbjct: 110 LEVVAATPTSLLISWDASYYGVS-----YYRITYGETG-GNSPVQEFTVPYSSS----TA 159
Query: 121 TLTGLRKYRKYDIVVQAFNEKGPGPMSSEVSV 152
T++GL+ Y I V A+++ S +S+
Sbjct: 160 TISGLKPGVDYTITVYAYSDYYGSHHYSPISI 191
>2dle_A Receptor-type tyrosine-protein phosphatase ETA; protein-tyrosine
phosphatase ETA, R-PTP-ETA, HPTP ETA, protein-tyrosine
phosphatase receptor type J; NMR {Homo sapiens}
Length = 104
Score = 34.7 bits (79), Expect = 0.004
Identities = 23/106 (21%), Positives = 35/106 (33%), Gaps = 14/106 (13%)
Query: 57 EPSGLHAVAISSDSIRVTWSPPPAHLTNGDLLGYYLGYREQGFGRQNSYNFTTIPNRSDG 116
+ + AV IS+ S+ + W + Y+ G +S N R
Sbjct: 10 QVFDVTAVNISATSLTLIWKVSD------NESSSNYTYKIHVAGETDSSNLNVSEPR--- 60
Query: 117 AGVATLTGLRKYRKYDIVVQAFNEKGPGPMSSEVSVQTLEDVPAAP 162
A + GLR Y+I V G + V T P+ P
Sbjct: 61 ---AVIPGLRSSTFYNITVCPVLGDIEGTPGF-LQVHTPPV-PSGP 101
Score = 28.5 bits (63), Expect = 0.70
Identities = 13/50 (26%), Positives = 18/50 (36%), Gaps = 2/50 (4%)
Query: 11 TEQWAVLQDLLPATLYRVRVLAENSLGAGRPSDPLLVHTEAEPPTAEPSG 60
+E AV+ L +T Y + V G P L P+ SG
Sbjct: 57 SEPRAVIPGLRSSTFYNITVCPVLGDIEGTPG--FLQVHTPPVPSGPSSG 104
Score = 26.6 bits (58), Expect = 3.1
Identities = 9/40 (22%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Query: 162 PPLDITCSALSSTSLSVTWQPPPLLLQNGEILGYKVYYEN 201
D+T +S+TSL++ W+ ++ YK++
Sbjct: 10 QVFDVTAVNISATSLTLIWKVSD--NESSSNYTYKIHVAG 47
>1uc6_A CNTF receptor, ciliary neurotrophic factor receptor alpha;
cytokine, leukemia inhibitory factor, cytokine receptor;
NMR {Homo sapiens} SCOP: b.1.2.1
Length = 109
Score = 33.8 bits (77), Expect = 0.009
Identities = 20/102 (19%), Positives = 33/102 (32%), Gaps = 13/102 (12%)
Query: 58 PSGLHAVAI--SSDSIRVTWSPPP-AHLTNGDLLGYYLGYREQGFGRQNSYNFTTIPNRS 114
P + A + + + VTW P L ++L YR + +
Sbjct: 11 PENVVARPVPSNPRRLEVTWQTPSTWPDPESFPLKFFLRYRPLILDQWQHVELSNGT--- 67
Query: 115 DGAGVATLTGLRKYRKYDIVVQAFNEKGPGPMS--SEVSVQT 154
T+T ++Y I V A + G S S + T
Sbjct: 68 ----AHTITDAYAGKEYIIQVAA-KDNEIGTWSDWSVAAHAT 104
Score = 30.7 bits (69), Expect = 0.11
Identities = 10/41 (24%), Positives = 16/41 (39%), Gaps = 3/41 (7%)
Query: 162 PPLDITCSAL--SSTSLSVTWQPPPLL-LQNGEILGYKVYY 199
PP ++ + + L VTWQ P L + + Y
Sbjct: 10 PPENVVARPVPSNPRRLEVTWQTPSTWPDPESFPLKFFLRY 50
Score = 29.6 bits (66), Expect = 0.26
Identities = 8/41 (19%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 3 EWKSQNSGTEQWAVLQDLLPATLYRVRVLAENSLGAGRPSD 43
+W+ + D Y ++V A+++ G SD
Sbjct: 57 QWQHVELSNGTAHTITDAYAGKEYIIQVAAKDN-EIGTWSD 96
>3og6_B Interleukin 28 receptor, alpha (interferon, lambd receptor);
helical bundle, fibronectin type III domain,
beta-sandwich, signaling, membrane; HET: BMA NAG; 2.10A
{Homo sapiens} PDB: 3og4_B*
Length = 226
Score = 34.3 bits (78), Expect = 0.018
Identities = 18/133 (13%), Positives = 35/133 (26%), Gaps = 22/133 (16%)
Query: 26 YRVRVLAENSLGAGRPSDP-------LLVHTEAEPPTAEPSGLHAVAISSDSIRVTWSPP 78
++ RV + S L E PP + + + + +
Sbjct: 78 FKGRVRTVS---PSSKSPWVESEYLDYLFEVEPAPPVLV------LTQTEEILSANATYQ 128
Query: 79 PAHLTNGDLLGYYLGYREQGFGRQNSYNFTTIPNRSDGAGVATLTGLRKYRKYDIVVQAF 138
L Y + + ++G G + T P G V + + +
Sbjct: 129 LPPCMPPLDLKYEVAFWKEGAGNK-----TLFPVTPHGQPVQITLQPAASEHHCLSARTI 183
Query: 139 NEKGPGPMSSEVS 151
P S+ S
Sbjct: 184 YTFSV-PKYSKFS 195
Score = 32.0 bits (72), Expect = 0.11
Identities = 21/127 (16%), Positives = 41/127 (32%), Gaps = 5/127 (3%)
Query: 73 VTWSPPPAHLTNGDLLGYYLGYREQGFGRQNSYNFTTIPNRSDGAGVATLTGLRKYRKYD 132
+TW P + + + Y++ Y+ R+ + + L Y K+
Sbjct: 23 LTWLPGLGNPQD---VTYFVAYQSSPTRRRWREVEECAGTKELLCSMMCLKKQDLYNKFK 79
Query: 133 IVVQAFNEKGPGPMSSEVSVQTLEDVPAAPPLDITCSALSSTSLSVTWQPPPLLLQNGEI 192
V+ + P + L +V APP + + + LS
Sbjct: 80 GRVRTVSPSSKSPWVESEYLDYLFEVEPAPP-VLVLTQ-TEEILSANATYQLPPCMPPLD 137
Query: 193 LGYKVYY 199
L Y+V +
Sbjct: 138 LKYEVAF 144
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.9 bits (77), Expect = 0.033
Identities = 36/210 (17%), Positives = 61/210 (29%), Gaps = 83/210 (39%)
Query: 12 EQWAVLQDLLPATLYRVRVLAENSLGAGRPSDPL-----LVHTEAEPPTAEPSGLH---- 62
+W P Y L + S PL L H TA+ G
Sbjct: 216 LEWLENPSNTPDKDY----LLSIPI-----SCPLIGVIQLAHYVV---TAKLLGFTPGEL 263
Query: 63 ----------------AVAIS-SDSIRVTWSPPPAHLTNGD----LLGYYLGYREQGFGR 101
AVAI+ +DS W + + +L +++G R
Sbjct: 264 RSYLKGATGHSQGLVTAVAIAETDS----W---ESFFVSVRKAITVL-FFIGVR-----C 310
Query: 102 QNSYNFTTIPNRSDGAGVATLTGLRKYRKYDIVVQAFNEKGPGPMSSEVSVQTLEDVPAA 161
+Y T++P +++ E G S +S+ L
Sbjct: 311 YEAYPNTSLPPS--------------------ILEDSLENNEGVPSPMLSISNLTQEQVQ 350
Query: 162 PPLDITCSALSSTS-LSVTWQPPPLLLQNG 190
++ T S L + + ++ L NG
Sbjct: 351 DYVNKTNSHLPAGKQVEIS-------LVNG 373
Score = 33.9 bits (77), Expect = 0.034
Identities = 44/266 (16%), Positives = 75/266 (28%), Gaps = 88/266 (33%)
Query: 11 TEQW---AVLQDLLPATLYRVRVLAENSLGAGRPSDP--LL------VHTEAEPPTAEP- 58
T + + LQ+ L E P+ P L+ V + EP
Sbjct: 24 TASFFIASQLQEQFNKILPEP---TEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQF 80
Query: 59 ----------------SG--LHAVAISSDSIRVTWSPPPAHLTNGDLLGYYLGYREQGFG 100
G +HA+A + +L+ Y+ R
Sbjct: 81 DQVLNLCLTEFENCYLEGNDIHALAAKLLQ-----ENDTTLVKTKELIKNYITARIMA-K 134
Query: 101 RQNSYNFTTIPNRSDGAGVATLT----G----------LRK-YRKYDIVVQAF------- 138
R + R+ G G A L G LR Y+ Y ++V
Sbjct: 135 RPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAET 194
Query: 139 -NEKGPGPMSSEVS-------VQTLEDVPAAPPLDITCSALSSTSLSVTWQPPPL--LLQ 188
+E + +E ++ LE+ P D S ++ PL ++Q
Sbjct: 195 LSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSI------PISC---PLIGVIQ 245
Query: 189 ------NGEILGYKVYYENMRELPMG 208
++LG+ +R G
Sbjct: 246 LAHYVVTAKLLGFT--PGELRSYLKG 269
Score = 33.1 bits (75), Expect = 0.073
Identities = 29/186 (15%), Positives = 47/186 (25%), Gaps = 66/186 (35%)
Query: 66 ISSDSIRVTWSPPPAHLTNGDLLGYYLGYREQGFGRQNSYNFT-TIPNRSDG-------A 117
+S S+ P A L +EQ F +P ++G
Sbjct: 11 LSHGSLEHVLLVPTASFFIASQL------QEQ---------FNKILPEPTEGFAADDEPT 55
Query: 118 GVATLTGLRKYRKYDIVVQAFNEKGPGPMSSEV---SVQTLE-------DV-------PA 160
A L G K+ Y V + E +V + E D+
Sbjct: 56 TPAELVG--KFLGY---VSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQ 110
Query: 161 APPLDITCS---------ALSSTSLSVTWQPPPLLLQN---GE-----ILG----YKVYY 199
+ + A + L + G I G Y+
Sbjct: 111 ENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYF 170
Query: 200 ENMREL 205
E +R+L
Sbjct: 171 EELRDL 176
>1wde_A Probable diphthine synthase; structural genomics, conserved
hypothetical protein, riken S genomics/proteomics
initiative, RSGI, transferase; 2.00A {Aeropyrum pernix}
SCOP: c.90.1.1
Length = 294
Score = 33.2 bits (75), Expect = 0.048
Identities = 15/68 (22%), Positives = 20/68 (29%)
Query: 80 AHLTNGDLLGYYLGYREQGFGRQNSYNFTTIPNRSDGAGVATLTGLRKYRKYDIVVQAFN 139
A +T GD + + IP S T L YR V
Sbjct: 87 AVVTAGDPMVATTHSSLAAEALEAGVAVRYIPGVSGVQAARGATMLSFYRFGGTVTLPGP 146
Query: 140 EKGPGPMS 147
+G P+S
Sbjct: 147 WRGVTPIS 154
>1vhv_A Diphthine synthase; structural genomics, transferase; HET: MSE;
1.75A {Archaeoglobus fulgidus} SCOP: c.90.1.1
Length = 268
Score = 31.5 bits (71), Expect = 0.16
Identities = 12/62 (19%), Positives = 18/62 (29%)
Query: 80 AHLTNGDLLGYYLGYREQGFGRQNSYNFTTIPNRSDGAGVATLTGLRKYRKYDIVVQAFN 139
L GD + + + I S V LTGL YR +++
Sbjct: 91 VLLVPGDPMVATTHSAIKLEAERKGVKTRIIHGASISTAVCGLTGLHNYRFGKSATVSWH 150
Query: 140 EK 141
Sbjct: 151 RS 152
>3cxe_C Granulocyte-macrophage colony-stimulating factor subunit alpha;
GM-CSF, receptor complex, dodecamer, disease mutation,
glyco membrane; HET: NAG BMA; 3.30A {Homo sapiens}
Length = 120
Score = 28.9 bits (64), Expect = 0.48
Identities = 9/47 (19%), Positives = 17/47 (36%), Gaps = 2/47 (4%)
Query: 162 PPLDITCSALSSTSLSVTWQPPPLLL-QNGEILGYKVYYENMRELPM 207
PP ++T ++T V W+ P + Y++ P
Sbjct: 20 PPSNVTVR-CNTTHCLVRWKQPRTYQKLSYLDFQYQLDVHRKNTQPG 65
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus}
SCOP: b.1.1.1 b.1.1.3
Length = 176
Score = 27.6 bits (61), Expect = 2.4
Identities = 10/53 (18%), Positives = 20/53 (37%), Gaps = 8/53 (15%)
Query: 135 VQAFNEKGPGPMSSEVSVQTLEDVPAAPPLDI-------TCSALSSTSLSVTW 180
V ++ G ++ + ++ LE V P + TC L T + +
Sbjct: 78 VTVYSTNGTRILNKALDLRILEMVSK-PMIYWECSNATLTCEVLEGTDVELKL 129
>2z6r_A Diphthine synthase; methyltransferase, S-adenosyl-L-methionine,
transferase; HET: SAH MES; 1.50A {Pyrococcus horikoshii}
PDB: 2dek_A* 1wng_A* 1vce_A* 2ed3_A* 2e4r_A* 2owg_A*
2ek3_A* 2pcm_A* 2p5c_A* 2hut_A* 2emr_A* 2el3_A* 2el0_A*
2ejk_A* 2eld_A* 2el2_A* 2eka_A* 2eh5_A* 2pcg_A* 2el1_A*
...
Length = 265
Score = 27.7 bits (61), Expect = 2.6
Identities = 16/66 (24%), Positives = 23/66 (34%), Gaps = 1/66 (1%)
Query: 82 LTNGDLLGYYLGYREQGFGRQNSYNFTTIPNRSDGAGVATLTGLRKYRKYDIVVQAFNEK 141
LT GD L + ++ I S + V +TGL Y+ A+ E
Sbjct: 83 LTPGDPLVATTHAELRIRAKRAGVESYVIHAPSIYSAVG-ITGLHIYKFGKSATVAYPEG 141
Query: 142 GPGPMS 147
P S
Sbjct: 142 NWFPTS 147
>3i4t_A Diphthine synthase; niaid, ssgcid, infectious disease, anaerobic
parasitic protozoan, structural genomics, decode, UW,
SBRI; 2.49A {Entamoeba histolytica}
Length = 292
Score = 27.8 bits (61), Expect = 2.7
Identities = 15/66 (22%), Positives = 22/66 (33%), Gaps = 1/66 (1%)
Query: 82 LTNGDLLGYYLGYREQGFGRQNSYNFTTIPNRSDGAGVATLTGLRKYRKYDIVVQAFNEK 141
L GD+ G ++ I N S + +GL+ YR V F +
Sbjct: 101 LVVGDVYGATTHSDIFVRCQKMGIEVKVIHNASIMNAIG-CSGLQLYRFGQTVSVCFWSE 159
Query: 142 GPGPMS 147
P S
Sbjct: 160 HWRPSS 165
>2x2u_A Proto-oncogene tyrosine-protein kinase receptor RET; hirschsprung
disease, extracellular domain, disease mutation,
transferase, glycoprotein; HET: NAG SO4; 2.00A {Homo
sapiens}
Length = 246
Score = 27.6 bits (61), Expect = 3.1
Identities = 7/31 (22%), Positives = 10/31 (32%), Gaps = 1/31 (3%)
Query: 129 RKYDIVVQAFNEKGPGPMSSEVSVQ-TLEDV 158
KY++V G V T+ D
Sbjct: 207 EKYELVAVCTVHAGAREEVVMVPFPVTVYDE 237
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A*
1qa9_A
Length = 182
Score = 27.2 bits (60), Expect = 3.2
Identities = 20/147 (13%), Positives = 46/147 (31%), Gaps = 40/147 (27%)
Query: 61 LHAVAISSDSIRVTWSPPPAHLTNGDLLGYYLGYREQGFGRQNSYNFT-----TIPN--R 113
+ + +S D + W ++ + + +E + ++Y I +
Sbjct: 21 IPSFQMSDDIDDIKWE----KTSDKKKIAQFRKEKETFKEK-DTYKLFKNGTLKIKHLKT 75
Query: 114 SDGAGVATLTGLRKYRKYDIVVQAFNEKGPGPMSSEVSVQTLEDVPAAPPLDI------- 166
D + Y+ V ++ KG + ++ E V P +
Sbjct: 76 DD-------QDI--YK-----VSIYDTKGKNVLEKIFDLKIQERVSK-PKISWTCINTTL 120
Query: 167 TCSALSSTSLSVTWQPPPLLLQNGEIL 193
TC ++ T + Q+G+ L
Sbjct: 121 TCEVMNGTDPELNL------YQDGKHL 141
>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural
genomics, seattle structural genomi for infectious
disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}
Length = 448
Score = 26.9 bits (60), Expect = 5.3
Identities = 15/60 (25%), Positives = 20/60 (33%), Gaps = 15/60 (25%)
Query: 25 LYRVRVLAENSLGAGRPSDPLLVHTEAEPPTAEPSGLHAVAISS---DSIRVTWSPPPAH 81
LY R+ G L V + E + + A+ S IR TWS H
Sbjct: 281 LYGERI------GC------LHVVHAGVEGSVEKNKALSAAMVSGMTLQIRKTWSMSAIH 328
>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus
musculus}
Length = 550
Score = 26.9 bits (60), Expect = 6.1
Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 127 KYRKYDIVVQAFNEKGPGPMSSEVSVQ-TLEDV 158
Y Y +VVQA + +S+ T++D+
Sbjct: 183 SYPTYTLVVQAAD-LQGEGLSTTAKAVITVKDI 214
>1wft_A 1700129L13RIK protein; FN3 domain, similar to HOST cell factor 2,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: b.1.2.1
Length = 123
Score = 26.0 bits (56), Expect = 6.1
Identities = 22/106 (20%), Positives = 33/106 (31%), Gaps = 12/106 (11%)
Query: 67 SSDSIRVTWSPPPAHLTNGDLLGY--YLGYREQGFGRQNSYNFTTIPNRSDGAGVATLTG 124
+ D I ++W PP + +G++L Y YL R S G
Sbjct: 19 NVDGIHLSWEPPTS--PSGNILEYSAYLAIRTAQMQDNPSQLVFMRIYCGLKTSCTVTAG 76
Query: 125 LRKYRKYDIV--------VQAFNEKGPGPMSSEVSVQTLEDVPAAP 162
D + A NEKG GP + +Q +
Sbjct: 77 QLANAHIDYTSRPAIVFRISAKNEKGYGPATQIRWLQGNSKSGPSS 122
>3mvs_A Cadherin-23, otocadherin; adhesion, extracellular domain, cell
adhesion; 1.10A {Mus musculus} PDB: 2wcp_A 2whv_A 2wd0_A
2wbx_A
Length = 210
Score = 26.4 bits (59), Expect = 6.5
Identities = 6/31 (19%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 129 RKYDIVVQAFNEKGPGPMSSEVSVQ-TLEDV 158
+ Y + V A ++ P+S+ ++ + D+
Sbjct: 176 QAYQLTVNATDQDKTRPLSTLANLAIIITDM 206
>2w0y_A APH, alkaline phosphatase; hydrolase, halophilic; 1.7A
{Halobacterium salinarum R1} PDB: 2x98_A
Length = 473
Score = 26.7 bits (59), Expect = 7.0
Identities = 13/73 (17%), Positives = 25/73 (34%), Gaps = 13/73 (17%)
Query: 114 SDGAGVATLTGLRKYRKYDIVVQAFNEKGPGPMSSEVSVQTLEDVPAA---------PPL 164
DG G ++ R Y + E+ P +S + + + P
Sbjct: 55 VDGMGQTQISAARYLNAY----KTAPERFPLNVSPAETPTGFDAFSSRGSMTTFPDDPYE 110
Query: 165 DITCSALSSTSLS 177
T SA ++T+ +
Sbjct: 111 TTTDSAAAATAFA 123
>2vtf_A Endo-beta-N-acetylglucosaminidase; hydrolase, family 85,
glycosidase, carbohydrat binding; HET: B3P PGE; 1.79A
{Arthrobacter protophormiae} PDB: 3fhq_A* 3fha_A*
Length = 626
Score = 26.7 bits (58), Expect = 7.7
Identities = 10/53 (18%), Positives = 23/53 (43%), Gaps = 6/53 (11%)
Query: 149 EVSVQTLEDVPAAPPLDITCSALSSTSLSVTWQPPPLLLQNGEILGYKVYYEN 201
+++V + PAAP +++ + + + W+ + Y+VY E
Sbjct: 525 QLAVGADSEKPAAPNVNVRQYDPDPSGIQLVWEKQS------NVHHYRVYKET 571
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction,
adhesion, structural protein; HET: NAG NDG; 30.00A {Mus
musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A*
Length = 880
Score = 26.8 bits (59), Expect = 7.7
Identities = 8/33 (24%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
Query: 127 KYRKYDIVVQAFNEKGPGPMSSEVSVQ-TLEDV 158
K+ +Y + VQA + +S E + D
Sbjct: 338 KFPEYTLTVQATD-LEGAGLSVEGKAIIQITDA 369
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold,
transmembrane, MHC lipoprotein, polymorphism; 3.90A
{Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3
PDB: 1wip_A 1wiq_A 3t0e_E
Length = 363
Score = 26.3 bits (57), Expect = 9.7
Identities = 6/46 (13%), Positives = 11/46 (23%), Gaps = 4/46 (8%)
Query: 136 QAFNEKGPGPMSSEVSVQTLEDVPAAPPLDITCSALSSTSLSVTWQ 181
+ G + V ++TC TS +
Sbjct: 275 ALEAKTGKLHQEVNLVVMRATQ----LQKNLTCEVWGPTSPKLMLS 316
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.313 0.132 0.397
Gapped
Lambda K H
0.267 0.0473 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,272,482
Number of extensions: 186753
Number of successful extensions: 1182
Number of sequences better than 10.0: 1
Number of HSP's gapped: 692
Number of HSP's successfully gapped: 442
Length of query: 209
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 120
Effective length of database: 4,216,824
Effective search space: 506018880
Effective search space used: 506018880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.6 bits)