BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14534
(423 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2J3F|D Chain D, L-Ficolin Complexed To N-Acetyl-D-Galactosamine
Length = 219
Score = 135 bits (341), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 75/183 (40%), Positives = 103/183 (56%), Gaps = 14/183 (7%)
Query: 249 SVLCD----EHHWMTIQRRYNGMQEFNLKWTDYAQGFGSPESEFWIGNDALHRLTSQDNM 304
+VLCD W QRR +G +F W Y QGFGS EFW+GND +H LT+Q
Sbjct: 36 TVLCDMDTDGGGWTVFQRRVDGSVDFYRDWATYKQGFGSRLGEFWLGNDNIHALTAQGTS 95
Query: 305 SLRIEFVDIYGKAWYAEYDTFSVASESEGYRLNLSGY-HGNASDAMTYQNNMKFSTIDRD 363
LR + VD +A+Y +F VA E+E Y L L + G+A D++T+ NN FST D+D
Sbjct: 96 ELRTDLVDFEDNYQFAKYRSFKVADEAEKYNLVLGAFVEGSAGDSLTFHNNQSFSTKDQD 155
Query: 364 NDLSNTHCASNYEGGWWFSHCLHANLNGK--------FNLGLTWFHSEKNEWMAVARSHM 415
NDL+N +CA ++G WW+ +C +NLNG+ F G+ W S K + S M
Sbjct: 156 NDLNNGNCAVMFQGAWWYKNCHTSNLNGRYLRGTHGSFANGINW-KSGKGYNYSYKVSEM 214
Query: 416 KIR 418
K+R
Sbjct: 215 KVR 217
>pdb|2D39|A Chain A, Trivalent Recognition Unit Of Innate Immunity System;
Crystal Structure Of Human M-Ficolin Fibrinogen-Like
Domain
pdb|2D39|B Chain B, Trivalent Recognition Unit Of Innate Immunity System;
Crystal Structure Of Human M-Ficolin Fibrinogen-Like
Domain
pdb|2D39|C Chain C, Trivalent Recognition Unit Of Innate Immunity System;
Crystal Structure Of Human M-Ficolin Fibrinogen-Like
Domain
Length = 237
Score = 135 bits (341), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 72/182 (39%), Positives = 106/182 (58%), Gaps = 12/182 (6%)
Query: 249 SVLCD----EHHWMTIQRRYNGMQEFNLKWTDYAQGFGSPESEFWIGNDALHRLTSQDNM 304
+VLCD W QRR +G +F W Y QGFGS EFW+GND +H LT+Q +
Sbjct: 31 TVLCDMDTDGGGWTVFQRRMDGSVDFYRDWAAYKQGFGSQLGEFWLGNDNIHALTAQGSS 90
Query: 305 SLRIEFVDIYGKAWYAEYDTFSVASESEGYRLNLSGY-HGNASDAMTYQNNMKFSTIDRD 363
LR++ VD G +A+Y +F VA E+E Y+L L + G+A +++T NN FST D+D
Sbjct: 91 ELRVDLVDFEGNHQFAKYKSFKVADEAEKYKLVLGAFVGGSAGNSLTGHNNNFFSTKDQD 150
Query: 364 NDLSNTHCASNYEGGWWFSHCLHANLNGKFNLGLTWFHSEKNEWMAVAR-------SHMK 416
ND+S+++CA ++G WW++ C +NLNG + +G ++ W A S MK
Sbjct: 151 NDVSSSNCAEKFQGAWWYADCHASNLNGLYLMGPHESYANGINWSAAKGYKYSYKVSEMK 210
Query: 417 IR 418
+R
Sbjct: 211 VR 212
>pdb|2WNP|F Chain F, M-Ficolin Mutant Y271f
Length = 217
Score = 134 bits (338), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 66/153 (43%), Positives = 97/153 (63%), Gaps = 5/153 (3%)
Query: 249 SVLCD----EHHWMTIQRRYNGMQEFNLKWTDYAQGFGSPESEFWIGNDALHRLTSQDNM 304
+VLCD W QRR +G +F W Y QGFGS EFW+GND +H LT+Q +
Sbjct: 34 TVLCDMDTDGGGWTVFQRRMDGSVDFYRDWAAYKQGFGSQLGEFWLGNDNIHALTAQGSS 93
Query: 305 SLRIEFVDIYGKAWYAEYDTFSVASESEGYRLNLSGY-HGNASDAMTYQNNMKFSTIDRD 363
LR++ VD G +A+Y +F VA E+E Y+L L + G+A +++T NN FST D+D
Sbjct: 94 ELRVDLVDFEGNHQFAKYKSFKVADEAEKYKLVLGAFVGGSAGNSLTGHNNNFFSTKDQD 153
Query: 364 NDLSNTHCASNYEGGWWFSHCLHANLNGKFNLG 396
ND+S+++CA ++G WW++ C +NLNG + +G
Sbjct: 154 NDVSSSNCAEKFQGAWWYADCHASNLNGLYLMG 186
>pdb|2J3F|A Chain A, L-Ficolin Complexed To N-Acetyl-D-Galactosamine
pdb|2J3F|B Chain B, L-Ficolin Complexed To N-Acetyl-D-Galactosamine
pdb|2J3F|C Chain C, L-Ficolin Complexed To N-Acetyl-D-Galactosamine
pdb|2J3F|E Chain E, L-Ficolin Complexed To N-Acetyl-D-Galactosamine
pdb|2J3F|F Chain F, L-Ficolin Complexed To N-Acetyl-D-Galactosamine
pdb|2J3O|A Chain A, L-Ficolin Complexed To N-Acetyl-D-Glucosamine
pdb|2J3O|B Chain B, L-Ficolin Complexed To N-Acetyl-D-Glucosamine
pdb|2J3O|C Chain C, L-Ficolin Complexed To N-Acetyl-D-Glucosamine
pdb|2J3O|D Chain D, L-Ficolin Complexed To N-Acetyl-D-Glucosamine
pdb|2J3O|E Chain E, L-Ficolin Complexed To N-Acetyl-D-Glucosamine
pdb|2J3O|F Chain F, L-Ficolin Complexed To N-Acetyl-D-Glucosamine
Length = 219
Score = 133 bits (335), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 74/183 (40%), Positives = 102/183 (55%), Gaps = 14/183 (7%)
Query: 249 SVLCD----EHHWMTIQRRYNGMQEFNLKWTDYAQGFGSPESEFWIGNDALHRLTSQDNM 304
+VLCD W QRR +G +F W Y QGFGS EFW+GND +H LT+Q
Sbjct: 36 TVLCDMDTDGGGWTVFQRRVDGSVDFYRDWATYKQGFGSRLGEFWLGNDNIHALTAQGTS 95
Query: 305 SLRIEFVDIYGKAWYAEYDTFSVASESEGYRLNLSGY-HGNASDAMTYQNNMKFSTIDRD 363
LR + VD +A+Y +F VA E+E Y L L + G+A D++T+ NN FST D+D
Sbjct: 96 ELRTDLVDFEDNYQFAKYRSFKVADEAEKYNLVLGAFVEGSAGDSLTFHNNQSFSTKDQD 155
Query: 364 NDLSNTHCASNYEGGWWFSHCLHANLNGK--------FNLGLTWFHSEKNEWMAVARSHM 415
NDL+ +CA ++G WW+ +C +NLNG+ F G+ W S K + S M
Sbjct: 156 NDLNTGNCAVMFQGAWWYKNCHTSNLNGRYLRGTHGSFANGINW-KSGKGYNYSYKVSEM 214
Query: 416 KIR 418
K+R
Sbjct: 215 KVR 217
>pdb|2JHI|F Chain F, Structure Of Globular Heads Of M-Ficolin Complexed With N-
Acetyl-D-Galactosamine
pdb|2JHK|F Chain F, Structure Of Globular Heads Of M-Ficolin Complexed With N-
Acetyl-D-Glucosamine
Length = 218
Score = 133 bits (335), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 81/216 (37%), Positives = 116/216 (53%), Gaps = 23/216 (10%)
Query: 226 QVVGKLPNDCE-----GH--SGLQLISLGR----SVLCD----EHHWMTIQRRYNGMQEF 270
Q P +C+ GH SG I L +VLCD W QRR +G +F
Sbjct: 1 QSCATGPRNCKDLLDRGHFLSGWHTIYLPDCRPLTVLCDMDTDGGGWTVFQRRMDGSVDF 60
Query: 271 NLKWTDYAQGFGSPESEFWIGNDALHRLTSQDNMSLRIEFVDIYGKAWYAEYDTFSVASE 330
W Y QGFGS EFW+GND +H LT+Q + LR + VD G +A+Y +F VA E
Sbjct: 61 YRDWAAYKQGFGSQLGEFWLGNDNIHALTAQGSSELRTDLVDFEGNHQFAKYKSFKVADE 120
Query: 331 SEGYRLNLSGY-HGNASDAMTYQNNMKFSTIDRDNDLSNTHCASNYEGGWWFSHCLHANL 389
+E Y+L L + G+A +++T NN FST D+DND+S+++CA ++G WW++ C +NL
Sbjct: 121 AEKYKLVLGAFVGGSAGNSLTGHNNNFFSTKDQDNDVSSSNCAEKFQGAWWYADCHASNL 180
Query: 390 NGKFNLGLTWFHSEKNEWMAVAR-------SHMKIR 418
NG + +G ++ W A S MK+R
Sbjct: 181 NGLYLMGPHESYANGINWSAAKGYKYSYKVSEMKVR 216
>pdb|2J0G|A Chain A, L-Ficolin Complexed To N-Acetyl-Mannosamine
pdb|2J0G|B Chain B, L-Ficolin Complexed To N-Acetyl-Mannosamine
pdb|2J0G|C Chain C, L-Ficolin Complexed To N-Acetyl-Mannosamine
pdb|2J0G|D Chain D, L-Ficolin Complexed To N-Acetyl-Mannosamine
pdb|2J0G|E Chain E, L-Ficolin Complexed To N-Acetyl-Mannosamine
pdb|2J0G|F Chain F, L-Ficolin Complexed To N-Acetyl-Mannosamine
pdb|2J0H|A Chain A, L-Ficolin Complexed To Acetyl-Choline
pdb|2J0H|B Chain B, L-Ficolin Complexed To Acetyl-Choline
pdb|2J0H|C Chain C, L-Ficolin Complexed To Acetyl-Choline
pdb|2J0H|D Chain D, L-Ficolin Complexed To Acetyl-Choline
pdb|2J0H|E Chain E, L-Ficolin Complexed To Acetyl-Choline
pdb|2J0H|F Chain F, L-Ficolin Complexed To Acetyl-Choline
pdb|2J0Y|A Chain A, L-ficolin Complexed To B-1,3-d-glucan
pdb|2J0Y|B Chain B, L-ficolin Complexed To B-1,3-d-glucan
pdb|2J0Y|C Chain C, L-ficolin Complexed To B-1,3-d-glucan
pdb|2J0Y|D Chain D, L-ficolin Complexed To B-1,3-d-glucan
pdb|2J0Y|E Chain E, L-ficolin Complexed To B-1,3-d-glucan
pdb|2J0Y|F Chain F, L-ficolin Complexed To B-1,3-d-glucan
pdb|2J1G|A Chain A, L-Ficolin Complexed To N-Acetyl-Cystein
pdb|2J1G|B Chain B, L-Ficolin Complexed To N-Acetyl-Cystein
pdb|2J1G|C Chain C, L-Ficolin Complexed To N-Acetyl-Cystein
pdb|2J1G|D Chain D, L-Ficolin Complexed To N-Acetyl-Cystein
pdb|2J1G|E Chain E, L-Ficolin Complexed To N-Acetyl-Cystein
pdb|2J1G|F Chain F, L-Ficolin Complexed To N-Acetyl-Cystein
pdb|2J2P|A Chain A, L-Ficolin Complexed To N-Acetyl-Cystein (150mm)
pdb|2J2P|B Chain B, L-Ficolin Complexed To N-Acetyl-Cystein (150mm)
pdb|2J2P|C Chain C, L-Ficolin Complexed To N-Acetyl-Cystein (150mm)
pdb|2J2P|D Chain D, L-Ficolin Complexed To N-Acetyl-Cystein (150mm)
pdb|2J2P|E Chain E, L-Ficolin Complexed To N-Acetyl-Cystein (150mm)
pdb|2J2P|F Chain F, L-Ficolin Complexed To N-Acetyl-Cystein (150mm)
pdb|2J3G|A Chain A, L-ficolin
pdb|2J3G|B Chain B, L-ficolin
pdb|2J3G|C Chain C, L-ficolin
pdb|2J3G|D Chain D, L-ficolin
pdb|2J3G|E Chain E, L-ficolin
pdb|2J3G|F Chain F, L-ficolin
pdb|2J3U|A Chain A, L-Ficolin Complexed To Galactose
pdb|2J3U|B Chain B, L-Ficolin Complexed To Galactose
pdb|2J3U|C Chain C, L-Ficolin Complexed To Galactose
pdb|2J3U|D Chain D, L-Ficolin Complexed To Galactose
pdb|2J3U|E Chain E, L-Ficolin Complexed To Galactose
pdb|2J3U|F Chain F, L-Ficolin Complexed To Galactose
pdb|2J61|B Chain B, L-ficolin Complexed To N-acetylglucosamine (forme C)
Length = 218
Score = 133 bits (335), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 74/183 (40%), Positives = 102/183 (55%), Gaps = 14/183 (7%)
Query: 249 SVLCD----EHHWMTIQRRYNGMQEFNLKWTDYAQGFGSPESEFWIGNDALHRLTSQDNM 304
+VLCD W QRR +G +F W Y QGFGS EFW+GND +H LT+Q
Sbjct: 35 TVLCDMDTDGGGWTVFQRRVDGSVDFYRDWATYKQGFGSRLGEFWLGNDNIHALTAQGTS 94
Query: 305 SLRIEFVDIYGKAWYAEYDTFSVASESEGYRLNLSGY-HGNASDAMTYQNNMKFSTIDRD 363
LR + VD +A+Y +F VA E+E Y L L + G+A D++T+ NN FST D+D
Sbjct: 95 ELRTDLVDFEDNYQFAKYRSFKVADEAEKYNLVLGAFVEGSAGDSLTFHNNQSFSTKDQD 154
Query: 364 NDLSNTHCASNYEGGWWFSHCLHANLNGK--------FNLGLTWFHSEKNEWMAVARSHM 415
NDL+ +CA ++G WW+ +C +NLNG+ F G+ W S K + S M
Sbjct: 155 NDLNTGNCAVMFQGAWWYKNCHTSNLNGRYLRGTHGSFANGINW-KSGKGYNYSYKVSEM 213
Query: 416 KIR 418
K+R
Sbjct: 214 KVR 216
>pdb|2JHH|C Chain C, Structure Of Globular Heads Of M-Ficolin At Acidic Ph
pdb|2JHH|F Chain F, Structure Of Globular Heads Of M-Ficolin At Acidic Ph
pdb|2JHL|F Chain F, Structure Of Globular Heads Of M-Ficolin Complexed With
Sialic Acid
pdb|2JHM|F Chain F, Structure Of Globular Heads Of M-Ficolin At Neutral Ph
Length = 218
Score = 133 bits (334), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 72/182 (39%), Positives = 105/182 (57%), Gaps = 12/182 (6%)
Query: 249 SVLCD----EHHWMTIQRRYNGMQEFNLKWTDYAQGFGSPESEFWIGNDALHRLTSQDNM 304
+VLCD W QRR +G +F W Y QGFGS EFW+GND +H LT+Q +
Sbjct: 35 TVLCDMDTDGGGWTVFQRRMDGSVDFYRDWAAYKQGFGSQLGEFWLGNDNIHALTAQGSS 94
Query: 305 SLRIEFVDIYGKAWYAEYDTFSVASESEGYRLNLSGY-HGNASDAMTYQNNMKFSTIDRD 363
LR + VD G +A+Y +F VA E+E Y+L L + G+A +++T NN FST D+D
Sbjct: 95 ELRTDLVDFEGNHQFAKYKSFKVADEAEKYKLVLGAFVGGSAGNSLTGHNNNFFSTKDQD 154
Query: 364 NDLSNTHCASNYEGGWWFSHCLHANLNGKFNLGLTWFHSEKNEWMAVAR-------SHMK 416
ND+S+++CA ++G WW++ C +NLNG + +G ++ W A S MK
Sbjct: 155 NDVSSSNCAEKFQGAWWYADCHASNLNGLYLMGPHESYANGINWSAAKGYKYSYKVSEMK 214
Query: 417 IR 418
+R
Sbjct: 215 VR 216
>pdb|2J61|A Chain A, L-ficolin Complexed To N-acetylglucosamine (forme C)
Length = 218
Score = 133 bits (334), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 74/183 (40%), Positives = 102/183 (55%), Gaps = 14/183 (7%)
Query: 249 SVLCD----EHHWMTIQRRYNGMQEFNLKWTDYAQGFGSPESEFWIGNDALHRLTSQDNM 304
+VLCD W QRR +G +F W Y QGFGS EFW+GND +H LT+Q
Sbjct: 35 TVLCDMDTDGGGWTVFQRRVDGSVDFYRDWATYKQGFGSRLGEFWLGNDNIHALTAQGTS 94
Query: 305 SLRIEFVDIYGKAWYAEYDTFSVASESEGYRLNLSGY-HGNASDAMTYQNNMKFSTIDRD 363
LR + VD +A+Y +F VA E+E Y L L + G+A D++T+ NN FST D+D
Sbjct: 95 ELRTDLVDFEDNYQFAKYRSFRVADEAEKYNLVLGAFVEGSAGDSLTFHNNQSFSTKDQD 154
Query: 364 NDLSNTHCASNYEGGWWFSHCLHANLNGK--------FNLGLTWFHSEKNEWMAVARSHM 415
NDL+ +CA ++G WW+ +C +NLNG+ F G+ W S K + S M
Sbjct: 155 NDLNTGNCAVMFQGAWWYKNCHTSNLNGRYLRGTHGSFANGINW-KSGKGYNYSYKVSEM 213
Query: 416 KIR 418
K+R
Sbjct: 214 KVR 216
>pdb|1FZD|A Chain A, Structure Of Recombinant Alphaec Domain From Human
Fibrinogen-420
pdb|1FZD|B Chain B, Structure Of Recombinant Alphaec Domain From Human
Fibrinogen-420
pdb|1FZD|C Chain C, Structure Of Recombinant Alphaec Domain From Human
Fibrinogen-420
pdb|1FZD|D Chain D, Structure Of Recombinant Alphaec Domain From Human
Fibrinogen-420
pdb|1FZD|E Chain E, Structure Of Recombinant Alphaec Domain From Human
Fibrinogen-420
pdb|1FZD|F Chain F, Structure Of Recombinant Alphaec Domain From Human
Fibrinogen-420
pdb|1FZD|G Chain G, Structure Of Recombinant Alphaec Domain From Human
Fibrinogen-420
pdb|1FZD|H Chain H, Structure Of Recombinant Alphaec Domain From Human
Fibrinogen-420
Length = 201
Score = 130 bits (326), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 73/155 (47%), Positives = 91/155 (58%), Gaps = 17/155 (10%)
Query: 257 WMTIQRRYNGMQEFNLKWTDYAQGFGS----PESEFWIGNDALHRLTSQDNMSLRIEFVD 312
W+ IQ+R +G FN W DY +GFGS E EFW+GND LH LT + ++ LR+E D
Sbjct: 7 WLLIQQRMDGSLNFNRTWQDYKRGFGSLNDEGEGEFWLGNDYLHLLTQRGSV-LRVELED 65
Query: 313 IYGKAWYAEYDTFSVASESEGYRLNLSGYHGNASDAM-----------TYQNNMKFSTID 361
G YAEY F V SE+EGY L +S Y G A DA+ T NNM+FST D
Sbjct: 66 WAGNEAYAEYH-FRVGSEAEGYALQVSSYEGTAGDALIEGSVEEGAEYTSHNNMQFSTFD 124
Query: 362 RDNDLSNTHCASNYEGGWWFSHCLHANLNGKFNLG 396
RD D +CA Y GGWW+++C ANLNG + G
Sbjct: 125 RDADQWEENCAEVYGGGWWYNNCQAANLNGIYYPG 159
>pdb|2J5Z|A Chain A, H-Ficolin Complexed To Galactose
pdb|2J5Z|B Chain B, H-Ficolin Complexed To Galactose
pdb|2J5Z|C Chain C, H-Ficolin Complexed To Galactose
pdb|2J60|A Chain A, H-Ficolin Complexed To D-Fucose
pdb|2J60|B Chain B, H-Ficolin Complexed To D-Fucose
pdb|2J60|C Chain C, H-Ficolin Complexed To D-Fucose
pdb|2J64|A Chain A, H-Ficolin
pdb|2J64|B Chain B, H-Ficolin
pdb|2J64|C Chain C, H-Ficolin
Length = 221
Score = 122 bits (306), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 64/177 (36%), Positives = 96/177 (54%), Gaps = 8/177 (4%)
Query: 250 VLCD----EHHWMTIQRRYNGMQEFNLKWTDYAQGFGSPESEFWIGNDALHRLTSQDNMS 305
V CD W+ QRR +G +F W+ Y GFG+ ESEFW+GN+ LH+LT Q N
Sbjct: 41 VFCDMDTEGGGWLVFQRRQDGSVDFFRSWSSYRAGFGNQESEFWLGNENLHQLTLQGNWE 100
Query: 306 LRIEFVDIYGKAWYAEYDTFSVASESEGYRLNLSGY-HGNASDAMTYQNNMKFSTIDRDN 364
LR+E D G +A Y TF + E + Y+L L + G A D+++ + F+T D D+
Sbjct: 101 LRVELEDFNGNRTFAHYATFRLLGEVDHYQLALGKFSEGTAGDSLSLHSGRPFTTYDADH 160
Query: 365 DLSNTHCASNYEGGWWFSHCLHANLNGKFNLGLTWFHSEKNEWM---AVARSHMKIR 418
D SN++CA G WW++ C +NLNG++ + H +W V + ++R
Sbjct: 161 DSSNSNCAVIVHGAWWYASCYRSNLNGRYAVSEAAAHKYGIDWASGRGVGHPYRRVR 217
>pdb|1EI3|C Chain C, Crystal Structure Of Native Chicken Fibrinogen
pdb|1EI3|F Chain F, Crystal Structure Of Native Chicken Fibrinogen
Length = 409
Score = 114 bits (286), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 99/196 (50%), Gaps = 35/196 (17%)
Query: 257 WMTIQRRYNGMQEFNLKWTDYAQGFG--SPE--SEFWIGNDALHRLTSQDNM--SLRIEF 310
W +QRR +G ++F W Y +GFG SP+ +EFW+GN+ +H +T+Q + +LRIE
Sbjct: 191 WTVLQRRLDGSEDFRRNWVQYKEGFGHLSPDDTTEFWLGNEKIHLITTQSTLPYALRIEL 250
Query: 311 VDIYGKAWYAEYDTFSVASESEGYRLN----LSGYHGNASDAM-----------TYQNNM 355
D GK A+Y F V +E + YRL + G G+A D TY N M
Sbjct: 251 EDWSGKKGTADYAVFKVGTEEDKYRLTYAYFIGGERGDAFDGFNFGDDPSDKSYTYHNGM 310
Query: 356 KFSTIDRDNDLSNTHCASNYEGGWWFSHCLHANLNGKFNLGLTW--------------FH 401
+FST D DND +CA GWW + C +LNG + +G + +
Sbjct: 311 RFSTFDNDNDNFEGNCAEQDGSGWWMNRCHAGHLNGPYYIGGVYSRDTGTNSYDNGIIWA 370
Query: 402 SEKNEWMAVARSHMKI 417
+ ++ W ++ ++ MKI
Sbjct: 371 TWRDRWYSMKKTTMKI 386
>pdb|1M1J|C Chain C, Crystal Structure Of Native Chicken Fibrinogen With Two
Different Bound Ligands
pdb|1M1J|F Chain F, Crystal Structure Of Native Chicken Fibrinogen With Two
Different Bound Ligands
Length = 409
Score = 114 bits (285), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 99/196 (50%), Gaps = 35/196 (17%)
Query: 257 WMTIQRRYNGMQEFNLKWTDYAQGFG--SPE--SEFWIGNDALHRLTSQDNM--SLRIEF 310
W +QRR +G ++F W Y +GFG SP+ +EFW+GN+ +H +T+Q + +LRIE
Sbjct: 191 WTVLQRRLDGSEDFRRNWVQYKEGFGHLSPDDTTEFWLGNEKIHLITTQSTLPYALRIEL 250
Query: 311 VDIYGKAWYAEYDTFSVASESEGYRLN----LSGYHGNASDAM-----------TYQNNM 355
D GK A+Y F V +E + YRL + G G+A D TY N M
Sbjct: 251 EDWSGKKGTADYAVFKVGTEEDKYRLTYAYFIGGEAGDAFDGFNFGDDPSDKSYTYHNGM 310
Query: 356 KFSTIDRDNDLSNTHCASNYEGGWWFSHCLHANLNGKFNLGLTW--------------FH 401
+FST D DND +CA GWW + C +LNG + +G + +
Sbjct: 311 RFSTFDNDNDNFEGNCAEQDGSGWWMNRCHAGHLNGPYYIGGVYSRDTGTNSYDNGIIWA 370
Query: 402 SEKNEWMAVARSHMKI 417
+ ++ W ++ ++ MKI
Sbjct: 371 TWRDRWYSMKKTTMKI 386
>pdb|1JC9|A Chain A, Tachylectin 5a From Tachypleus Tridentatus (Japanese
Horseshoe Crab)
Length = 269
Score = 113 bits (282), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 66/176 (37%), Positives = 92/176 (52%), Gaps = 10/176 (5%)
Query: 253 DEHHWMTIQRR--YNGMQEFNLK-WTDYAQGFGSPESEFWIGNDALHRLTSQDNMSLRIE 309
D W IQRR Y ++ K W +Y GFG+ E +FW+GND + LT+Q N +R +
Sbjct: 85 DGGGWTVIQRRGNYGNPSDYFYKPWKNYKLGFGNIEKDFWLGNDRIFALTNQRNYMIRFD 144
Query: 310 FVDIYGKAWYAEYDTFSVASESEGYRLNLSGYHGNASDAMTYQNNMKFSTIDRDNDLSNT 369
D YA Y F + +E Y L++ Y G+A ++ N FSTID+D+D T
Sbjct: 145 LKDKENDTRYAIYQDFWIENEDYLYCLHIGNYSGDAGNSFGRHNGHNFSTIDKDHDTHET 204
Query: 370 HCASNYEGGWWFSHCLHANLNGKFNLGLTWFHSEKNEWMAVARSH-------MKIR 418
HCA Y+GGWW+ C +NLNG + G +++ EW A H MKIR
Sbjct: 205 HCAQTYKGGWWYDRCHESNLNGLYLNGEHNSYADGIEWRAWKGYHYSLPQVEMKIR 260
>pdb|3GHG|C Chain C, Crystal Structure Of Human Fibrinogen
pdb|3GHG|F Chain F, Crystal Structure Of Human Fibrinogen
pdb|3GHG|I Chain I, Crystal Structure Of Human Fibrinogen
pdb|3GHG|L Chain L, Crystal Structure Of Human Fibrinogen
Length = 411
Score = 108 bits (269), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 97/378 (25%), Positives = 171/378 (45%), Gaps = 60/378 (15%)
Query: 84 LLESIETIENKVDYNLPTIQREISKLEFGVAQINSTLQVVNETRESDANYLKSTVSTLAT 143
+ + + T + KVD +L +++ + ++E +++ ++ + T D + K + AT
Sbjct: 25 IADFLSTYQTKVDKDLQSLEDILHQVENKTSEVKQLIKAIQLTYNPDES-SKPNMIDAAT 83
Query: 144 LQEKVEANNIIMQALSDANYLKSTVSTLATLQEKVEANNIIMQALRNGRSEGLSLSSQLD 203
L+ + I+ S + + S++ LQE +NN Q + N + + L +Q
Sbjct: 84 LKSRKMLEEIMKYEAS----ILTHDSSIRYLQEIYNSNN---QKIVNLKEKVAQLEAQCQ 136
Query: 204 DSKNLSPETIMQQMNKIHDSYLQVVGKLPNDCEGHSGLQLISLGRS-----VLCD----E 254
+ +T+ +IHD + + N SGL I ++ V C+
Sbjct: 137 EP---CKDTV-----QIHDITGKDCQDIANKGAKQSGLYFIKPLKANQQFLVYCEIDGSG 188
Query: 255 HHWMTIQRRYNGMQEFNLKWTDYAQGFG--SPE--SEFWIGNDALHRLTSQDNM--SLRI 308
+ W Q+R +G +F W Y +GFG SP +EFW+GN+ +H +++Q + +LR+
Sbjct: 189 NGWTVFQKRLDGSVDFKKNWIQYKEGFGHLSPTGTTEFWLGNEKIHLISTQSAIPYALRV 248
Query: 309 EFVDIYGKAWYAEYDTFSVASESEGYRLNLSGYHG-NASDAM--------------TYQN 353
E D G+ A+Y F V E++ YRL + + G +A DA T N
Sbjct: 249 ELEDWNGRTSTADYAMFKVGPEADKYRLTYAYFAGGDAGDAFDGFDFGDDPSDKFFTSHN 308
Query: 354 NMKFSTIDRDNDLSNTHCASNYEGGWWFSHCLHANLNGKFNLGLTW-------------- 399
M+FST D DND +CA GWW + C +LNG + G T+
Sbjct: 309 GMQFSTWDNDNDKFEGNCAEQDGSGWWMNKCHAGHLNGVYYQGGTYSKASTPNGYDNGII 368
Query: 400 FHSEKNEWMAVARSHMKI 417
+ + K W ++ ++ MKI
Sbjct: 369 WATWKTRWYSMKKTTMKI 386
>pdb|1DEQ|B Chain B, The Crystal Structure Of Modified Bovine Fibrinogen (At ~4
Angstrom Resolution)
pdb|1DEQ|E Chain E, The Crystal Structure Of Modified Bovine Fibrinogen (At ~4
Angstrom Resolution)
pdb|1DEQ|O Chain O, The Crystal Structure Of Modified Bovine Fibrinogen (At ~4
Angstrom Resolution)
pdb|1DEQ|R Chain R, The Crystal Structure Of Modified Bovine Fibrinogen (At ~4
Angstrom Resolution)
Length = 408
Score = 105 bits (261), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 66/187 (35%), Positives = 88/187 (47%), Gaps = 37/187 (19%)
Query: 250 VLCD----EHHWMTIQRRYNGMQEFNLKWTDYAQGFG------------SPESEFWIGND 293
V CD + W IQ R +G +F KW Y QGFG E+W+GND
Sbjct: 185 VYCDMKTEKGGWTVIQNRQDGSVDFGRKWDPYKQGFGNIATNAEGKKYCGVPGEYWLGND 244
Query: 294 ALHRLTSQDNMSLRIEFVDIYGKAWYAEYDTFSVASESEGYRLNLSGYHGNASDA----- 348
+ +LT+ L IE D G A Y+ F+V +E+ Y+L++S Y G A +A
Sbjct: 245 RISQLTNMGPTKLLIEMEDWKGDKVTALYEGFTVQNEANKYQLSVSKYKGTAGNALIEGA 304
Query: 349 ---------MTYQNNMKFSTIDRDNDLSNT-----HCASNYEGGWWFSHCLHANLNGKFN 394
MT N+M FST DRDND T C+ GGWW++ C AN NG++
Sbjct: 305 SQLVGENRTMTIHNSMFFSTYDRDNDGWKTTDPRKQCSKEDGGGWWYNRCHAANPNGRYY 364
Query: 395 LG--LTW 399
G TW
Sbjct: 365 WGGAYTW 371
>pdb|1LWU|B Chain B, Crystal Structure Of Fragment D From Lamprey Fibrinogen
Complexed With The Peptide Gly-His-Arg-Pro-Amide
pdb|1LWU|E Chain E, Crystal Structure Of Fragment D From Lamprey Fibrinogen
Complexed With The Peptide Gly-His-Arg-Pro-Amide
pdb|1LWU|H Chain H, Crystal Structure Of Fragment D From Lamprey Fibrinogen
Complexed With The Peptide Gly-His-Arg-Pro-Amide
pdb|1LWU|K Chain K, Crystal Structure Of Fragment D From Lamprey Fibrinogen
Complexed With The Peptide Gly-His-Arg-Pro-Amide
pdb|1N73|B Chain B, Fibrin D-Dimer, Lamprey Complexed With The Peptide Ligand:
Gly-His- Arg-Pro-Amide
pdb|1N73|E Chain E, Fibrin D-Dimer, Lamprey Complexed With The Peptide Ligand:
Gly-His- Arg-Pro-Amide
Length = 323
Score = 104 bits (260), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 101/227 (44%), Gaps = 50/227 (22%)
Query: 243 LISLGRSVLCD-EHH---WMTIQRRYNGMQEFNLKWTDYAQGFGSP-----------ESE 287
L S V CD E H W +Q R +G F W Y FG+ E
Sbjct: 96 LFSEPYKVFCDMESHGGGWTVVQNRVDGSSNFARDWNTYKAEFGNIAFGNGKSICNIPGE 155
Query: 288 FWIGNDALHRLTSQDNMSLRIEFVDIYGKAWYAEYDTFSVASESEGYRLNLSGYHGNASD 347
+W+G +H+LT Q + + D G + YA+Y +F +E++GYRL + Y GNA +
Sbjct: 156 YWLGTKTVHQLTKQHTQQVLFDMSDWEGSSVYAQYASFRPENEAQGYRLWVEDYSGNAGN 215
Query: 348 A--------------MTYQNNMKFSTIDRDNDLSNT-----HCASNYEGGWWFSHCLHAN 388
A MT N M+FST DRDND N HC+ GGWW++ C AN
Sbjct: 216 ALLEGATQLMGDNRTMTIHNGMQFSTFDRDNDNWNPGDPTKHCSREDAGGWWYNRCHAAN 275
Query: 389 LNGKF---------------NLGLTWFHSEKNEWMAVARSHMKIRRR 420
NG++ + G+ W + K W ++ + MK+R +
Sbjct: 276 PNGRYYWGGIYTKEQADYGTDDGVVWMNW-KGSWYSMRQMAMKLRPK 321
>pdb|2GY7|A Chain A, Angiopoietin-2TIE2 COMPLEX CRYSTAL STRUCTURE
Length = 216
Score = 104 bits (259), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 63/173 (36%), Positives = 89/173 (51%), Gaps = 13/173 (7%)
Query: 257 WMTIQRRYNGMQEFNLKWTDYAQGFGSPESEFWIGNDALHRLTSQDNMSLRIEFVDIYGK 316
W IQRR +G +F W +Y GFG+P E+W+GN+ + +LT+Q L+I D G
Sbjct: 43 WTIIQRREDGSVDFQRTWKEYKVGFGNPSGEYWLGNEFVSQLTNQQRYVLKIHLKDWEGN 102
Query: 317 AWYAEYDTFSVASESEGYRLNLSGYHGNASDAMTY-QNNMKFSTIDRDNDLSNTHCASNY 375
Y+ Y+ F ++SE YR++L G G A + Q FST D DND C+
Sbjct: 103 EAYSLYEHFYLSSEELNYRIHLKGLTGTAGKISSISQPGNDFSTKDGDNDKCICKCSQML 162
Query: 376 EGGWWFSHCLHANLNG----------KFNLGLTWFHSEKNEWMAVARSHMKIR 418
GGWWF C +NLNG KFN G+ W++ K ++ + M IR
Sbjct: 163 TGGWWFDACGPSNLNGMYYPQRQNTNKFN-GIKWYY-WKGSGYSLKATTMMIR 213
>pdb|1Z3S|A Chain A, Angiopoietin-2 Receptor Binding Domain
pdb|1Z3S|B Chain B, Angiopoietin-2 Receptor Binding Domain
Length = 217
Score = 104 bits (259), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 63/173 (36%), Positives = 89/173 (51%), Gaps = 13/173 (7%)
Query: 257 WMTIQRRYNGMQEFNLKWTDYAQGFGSPESEFWIGNDALHRLTSQDNMSLRIEFVDIYGK 316
W IQRR +G +F W +Y GFG+P E+W+GN+ + +LT+Q L+I D G
Sbjct: 43 WTIIQRREDGSVDFQRTWKEYKVGFGNPSGEYWLGNEFVSQLTNQQRYVLKIHLKDWEGN 102
Query: 317 AWYAEYDTFSVASESEGYRLNLSGYHGNASDAMTY-QNNMKFSTIDRDNDLSNTHCASNY 375
Y+ Y+ F ++SE YR++L G G A + Q FST D DND C+
Sbjct: 103 EAYSLYEHFYLSSEELNYRIHLKGLTGTAGKISSISQPGNDFSTKDGDNDKCICKCSQML 162
Query: 376 EGGWWFSHCLHANLNG----------KFNLGLTWFHSEKNEWMAVARSHMKIR 418
GGWWF C +NLNG KFN G+ W++ K ++ + M IR
Sbjct: 163 TGGWWFDACGPSNLNGMYYPQRQNTNKFN-GIKWYY-WKGSGYSLKATTMMIR 213
>pdb|3GHG|B Chain B, Crystal Structure Of Human Fibrinogen
pdb|3GHG|E Chain E, Crystal Structure Of Human Fibrinogen
pdb|3GHG|H Chain H, Crystal Structure Of Human Fibrinogen
pdb|3GHG|K Chain K, Crystal Structure Of Human Fibrinogen
Length = 461
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 69/218 (31%), Positives = 96/218 (44%), Gaps = 49/218 (22%)
Query: 250 VLCD----EHHWMTIQRRYNGMQEFNLKWTDYAQGFGSPES------------EFWIGND 293
V CD W IQ R +G +F KW Y QGFG+ + E+W+GND
Sbjct: 238 VYCDMNTENGGWTVIQNRQDGSVDFGRKWDPYKQGFGNVATNTDGKNYCGLPGEYWLGND 297
Query: 294 ALHRLTSQDNMSLRIEFVDIYGKAWYAEYDTFSVASESEGYRLNLSGYHGNASDA----- 348
+ +LT L IE D G A Y F+V +E+ Y+++++ Y G A +A
Sbjct: 298 KISQLTRMGPTELLIEMEDWKGDKVKAHYGGFTVQNEANKYQISVNKYRGTAGNALMDGA 357
Query: 349 ---------MTYQNNMKFSTIDRDNDL-----SNTHCASNYEGGWWFSHCLHANLNGKFN 394
MT N M FST DRDND C+ GGWW++ C AN NG++
Sbjct: 358 SQLMGENRTMTIHNGMFFSTYDRDNDGWLTSDPRKQCSKEDGGGWWYNRCHAANPNGRYY 417
Query: 395 LG--LTWFHSE------------KNEWMAVARSHMKIR 418
G TW ++ K W ++ + MKIR
Sbjct: 418 WGGQYTWDMAKHGTDDGVVWMNWKGSWYSMRKMSMKIR 455
>pdb|3H32|B Chain B, Crystal Structure Of D-Dimer From Human Fibrin Complexed
With Gly-His- Arg-Pro-Tyr-Amide
pdb|3H32|E Chain E, Crystal Structure Of D-Dimer From Human Fibrin Complexed
With Gly-His- Arg-Pro-Tyr-Amide
Length = 458
Score = 103 bits (258), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 69/218 (31%), Positives = 96/218 (44%), Gaps = 49/218 (22%)
Query: 250 VLCD----EHHWMTIQRRYNGMQEFNLKWTDYAQGFGSPES------------EFWIGND 293
V CD W IQ R +G +F KW Y QGFG+ + E+W+GND
Sbjct: 238 VYCDMNTENGGWTVIQNRQDGSVDFGRKWDPYKQGFGNVATNTDGKNYCGLPGEYWLGND 297
Query: 294 ALHRLTSQDNMSLRIEFVDIYGKAWYAEYDTFSVASESEGYRLNLSGYHGNASDA----- 348
+ +LT L IE D G A Y F+V +E+ Y+++++ Y G A +A
Sbjct: 298 KISQLTRMGPTELLIEMEDWKGDKVKAHYGGFTVQNEANKYQISVNKYRGTAGNALMDGA 357
Query: 349 ---------MTYQNNMKFSTIDRDNDL-----SNTHCASNYEGGWWFSHCLHANLNGKFN 394
MT N M FST DRDND C+ GGWW++ C AN NG++
Sbjct: 358 SQLMGENRTMTIHNGMFFSTYDRDNDGWLTSDPRKQCSKEDGGGWWYNRCHAANPNGRYY 417
Query: 395 LG--LTWFHSE------------KNEWMAVARSHMKIR 418
G TW ++ K W ++ + MKIR
Sbjct: 418 WGGQYTWDMAKHGTDDGVVWMNWKGSWYSMRKMSMKIR 455
>pdb|1DEQ|C Chain C, The Crystal Structure Of Modified Bovine Fibrinogen (At ~4
Angstrom Resolution)
pdb|1DEQ|F Chain F, The Crystal Structure Of Modified Bovine Fibrinogen (At ~4
Angstrom Resolution)
pdb|1DEQ|P Chain P, The Crystal Structure Of Modified Bovine Fibrinogen (At ~4
Angstrom Resolution)
pdb|1DEQ|S Chain S, The Crystal Structure Of Modified Bovine Fibrinogen (At ~4
Angstrom Resolution)
Length = 411
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 84/293 (28%), Positives = 133/293 (45%), Gaps = 55/293 (18%)
Query: 169 STLATLQEKVEANNIIMQALRNGRSEGLSLSSQLDDSKNLSPETIMQQMNKIHDSYLQVV 228
ST+ LQE +N+ Q + N R + + L + + Q KIHD +
Sbjct: 105 STIRFLQEIYNSNS---QKIVNLRDKVVQLEANCQEP--------CQDTVKIHDVTGRDC 153
Query: 229 GKLPNDCEGHSGLQLISLGRS-----VLCD----EHHWMTIQRRYNGMQEFNLKWTDYAQ 279
+ N SGL I ++ V C+ + W Q+R +G +F W Y +
Sbjct: 154 QDVANKGAKESGLYFIRPLKAKQQFLVYCEIDGSGNGWTVFQKRLDGSLDFKKNWIQYKE 213
Query: 280 GFG--SP--ESEFWIGNDALHRLTSQDNMS--LRIEFVDIYGKAWYAEYDTFSVASESEG 333
GFG SP +EFW+GN+ +H +++Q + LRI+ D G+ A+Y +F V E++
Sbjct: 214 GFGHLSPTGNTEFWLGNEKIHLISTQSTIPYVLRIQLEDWNGRTSTADYASFKVTGENDK 273
Query: 334 YRLNLSGY-HGNASDAM--------------TYQNNMKFSTIDRDNDLSNTHCASNYEGG 378
YRL + + G+A DA T N M+FST D DND + +CA G
Sbjct: 274 YRLTYAYFIGGDAGDAFDGYDFGDDSSDKFFTSHNGMQFSTWDSDNDKYDGNCAEQDGSG 333
Query: 379 WWFSHCLHANLNGKFNLGLTW--------------FHSEKNEWMAVARSHMKI 417
WW + C +LNG + G T+ + + K+ W ++ ++ MKI
Sbjct: 334 WWMNKCHAGHLNGVYYQGGTYSKTSTPNGYDNGIIWATWKSRWYSMKKTTMKI 386
>pdb|1Z3U|A Chain A, Structure Of The Angiopoietin-2 Recptor Binding Domain And
Identification Of Surfaces Involved In Tie2 Recognition
pdb|1Z3U|B Chain B, Structure Of The Angiopoietin-2 Recptor Binding Domain And
Identification Of Surfaces Involved In Tie2 Recognition
pdb|1Z3U|C Chain C, Structure Of The Angiopoietin-2 Recptor Binding Domain And
Identification Of Surfaces Involved In Tie2 Recognition
pdb|1Z3U|D Chain D, Structure Of The Angiopoietin-2 Recptor Binding Domain And
Identification Of Surfaces Involved In Tie2 Recognition
Length = 217
Score = 103 bits (256), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 54/138 (39%), Positives = 75/138 (54%), Gaps = 1/138 (0%)
Query: 257 WMTIQRRYNGMQEFNLKWTDYAQGFGSPESEFWIGNDALHRLTSQDNMSLRIEFVDIYGK 316
W IQRR +G +F W +Y GFG+P E+W+GN+ + +LT+Q L+I D G
Sbjct: 43 WTIIQRREDGSVDFQRTWKEYKVGFGNPSGEYWLGNEFVSQLTNQQRYVLKIHLKDWEGN 102
Query: 317 AWYAEYDTFSVASESEGYRLNLSGYHGNASDAMTY-QNNMKFSTIDRDNDLSNTHCASNY 375
Y+ Y+ F ++SE YR++L G G A + Q FST D DND C+
Sbjct: 103 EAYSLYEHFYLSSEELNYRIHLKGLTGTAGKISSISQPGNDFSTKDGDNDKCICKCSQML 162
Query: 376 EGGWWFSHCLHANLNGKF 393
GGWWF C +NLNG +
Sbjct: 163 TGGWWFDACGPSNLNGMY 180
>pdb|1RE3|B Chain B, Crystal Structure Of Fragment D Of Bbetad398a Fibrinogen
With The Peptide Ligand Gly-his-arg-pro-amide
pdb|1RE3|E Chain E, Crystal Structure Of Fragment D Of Bbetad398a Fibrinogen
With The Peptide Ligand Gly-his-arg-pro-amide
pdb|1RE4|B Chain B, Crystal Structure Of Fragment D Of Bbetad398a Fibrinogen
pdb|1RE4|E Chain E, Crystal Structure Of Fragment D Of Bbetad398a Fibrinogen
Length = 313
Score = 102 bits (254), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 69/218 (31%), Positives = 96/218 (44%), Gaps = 49/218 (22%)
Query: 250 VLCD----EHHWMTIQRRYNGMQEFNLKWTDYAQGFGSPES------------EFWIGND 293
V CD W IQ R +G +F KW Y QGFG+ + E+W+GND
Sbjct: 90 VYCDMNTENGGWTVIQNRQDGSVDFGRKWDPYKQGFGNVATNTDGKNYCGLPGEYWLGND 149
Query: 294 ALHRLTSQDNMSLRIEFVDIYGKAWYAEYDTFSVASESEGYRLNLSGYHGNASDA----- 348
+ +LT L IE D G A Y F+V +E+ Y+++++ Y G A +A
Sbjct: 150 KISQLTRMGPTELLIEMEDWKGDKVKAHYGGFTVQNEANKYQISVNKYRGTAGNALMDGA 209
Query: 349 ---------MTYQNNMKFSTIDRDNDL-----SNTHCASNYEGGWWFSHCLHANLNGKFN 394
MT N M FST DRDND C+ GGWW++ C AN NG++
Sbjct: 210 SQLMGENRTMTIHNGMFFSTYDRDNDGWLTSDPRKQCSKEAGGGWWYNRCHAANPNGRYY 269
Query: 395 LG--LTW------------FHSEKNEWMAVARSHMKIR 418
G TW + + K W ++ + MKIR
Sbjct: 270 WGGQYTWDMAKHGTDDGVVWMNWKGSWYSMRKMSMKIR 307
>pdb|3E1I|B Chain B, Crystal Structure Of Bbetad432a Variant Fibrinogen
Fragment D With The Peptide Ligand Gly-His-Arg-Pro-Amide
pdb|3E1I|E Chain E, Crystal Structure Of Bbetad432a Variant Fibrinogen
Fragment D With The Peptide Ligand Gly-His-Arg-Pro-Amide
Length = 328
Score = 102 bits (253), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 69/218 (31%), Positives = 96/218 (44%), Gaps = 49/218 (22%)
Query: 250 VLCD----EHHWMTIQRRYNGMQEFNLKWTDYAQGFGSPES------------EFWIGND 293
V CD W IQ R +G +F KW Y QGFG+ + E+W+GND
Sbjct: 105 VYCDMNTENGGWTVIQNRQDGSVDFGRKWDPYKQGFGNVATNTDGKNYCGLPGEYWLGND 164
Query: 294 ALHRLTSQDNMSLRIEFVDIYGKAWYAEYDTFSVASESEGYRLNLSGYHGNASDA----- 348
+ +LT L IE D G A Y F+V +E+ Y+++++ Y G A +A
Sbjct: 165 KISQLTRMGPTELLIEMEDWKGDKVKAHYGGFTVQNEANKYQISVNKYRGTAGNALMDGA 224
Query: 349 ---------MTYQNNMKFSTIDRDNDL-----SNTHCASNYEGGWWFSHCLHANLNGKFN 394
MT N M FST DRDND C+ GGWW++ C AN NG++
Sbjct: 225 SQLMGENRTMTIHNGMFFSTYDRDNDGWLTSDPRKQCSKEDGGGWWYNRCHAANPNGRYY 284
Query: 395 LG--LTW------------FHSEKNEWMAVARSHMKIR 418
G TW + + K W ++ + MKIR
Sbjct: 285 WGGQYTWDMAKHGTADGVVWMNWKGSWYSMRKMSMKIR 322
>pdb|1FZA|B Chain B, Crystal Structure Of Fibrinogen Fragment D
pdb|1FZA|E Chain E, Crystal Structure Of Fibrinogen Fragment D
pdb|1FZB|B Chain B, Crystal Structure Of Crosslinked Fragment D
pdb|1FZB|E Chain E, Crystal Structure Of Crosslinked Fragment D
pdb|1FZC|B Chain B, Crystal Structure Of Fragment Double-d From Human Fibrin
With Two Different Bound Ligands
pdb|1FZC|E Chain E, Crystal Structure Of Fragment Double-d From Human Fibrin
With Two Different Bound Ligands
pdb|1FZE|B Chain B, Crystal Structure Of Fragment Double-D From Human Fibrin
pdb|1FZE|E Chain E, Crystal Structure Of Fragment Double-D From Human Fibrin
pdb|1FZF|B Chain B, Crystal Structure Of Fragment Double-D From Human Fibrin
With The Peptide Ligand Gly-His-Arg-Pro-Amide
pdb|1FZF|E Chain E, Crystal Structure Of Fragment Double-D From Human Fibrin
With The Peptide Ligand Gly-His-Arg-Pro-Amide
pdb|1FZG|B Chain B, Crystal Structure Of Fragment D From Human Fibrinogen With
The Peptide Ligand Gly-His-Arg-Pro-Amide
pdb|1FZG|E Chain E, Crystal Structure Of Fragment D From Human Fibrinogen With
The Peptide Ligand Gly-His-Arg-Pro-Amide
pdb|1N86|B Chain B, Crystal Structure Of Human D-Dimer From Cross-Linked
Fibrin Complexed With Gpr And Ghrpldk Peptide Ligands.
pdb|1N86|E Chain E, Crystal Structure Of Human D-Dimer From Cross-Linked
Fibrin Complexed With Gpr And Ghrpldk Peptide Ligands.
pdb|1N8E|B Chain B, Fragment Double-D From Human Fibrin
pdb|1N8E|E Chain E, Fragment Double-D From Human Fibrin
pdb|2H43|B Chain B, Crystal Structure Of Human Fragment D Complexed With
Ala-His-Arg-Pro- Amide
pdb|2H43|E Chain E, Crystal Structure Of Human Fragment D Complexed With
Ala-His-Arg-Pro- Amide
pdb|2HOD|B Chain B, Crystal Structure Of Fragment D From Human Fibrinogen
Complexed With Gly-hydroxypro-arg-pro-amide
pdb|2HOD|E Chain E, Crystal Structure Of Fragment D From Human Fibrinogen
Complexed With Gly-hydroxypro-arg-pro-amide
pdb|2HOD|H Chain H, Crystal Structure Of Fragment D From Human Fibrinogen
Complexed With Gly-hydroxypro-arg-pro-amide
pdb|2HOD|K Chain K, Crystal Structure Of Fragment D From Human Fibrinogen
Complexed With Gly-hydroxypro-arg-pro-amide
pdb|2HPC|B Chain B, Crystal Structure Of Fragment D From Human Fibrinogen
Complexed With Gly-Pro-Arg-Pro-Amide.
pdb|2HPC|E Chain E, Crystal Structure Of Fragment D From Human Fibrinogen
Complexed With Gly-Pro-Arg-Pro-Amide.
pdb|2HPC|H Chain H, Crystal Structure Of Fragment D From Human Fibrinogen
Complexed With Gly-Pro-Arg-Pro-Amide.
pdb|2HPC|K Chain K, Crystal Structure Of Fragment D From Human Fibrinogen
Complexed With Gly-Pro-Arg-Pro-Amide.
pdb|2HLO|B Chain B, Crystal Structure Of Fragment D-Dimer From Human Fibrin
Complexed With Gly-Hydroxypro-Arg-Pro-Amide
pdb|2HLO|E Chain E, Crystal Structure Of Fragment D-Dimer From Human Fibrin
Complexed With Gly-Hydroxypro-Arg-Pro-Amide
pdb|2Q9I|B Chain B, Crystal Structure Of D-dimer From Human Fibrin Complexed
With Met-his- Arg-pro-tyr-amide.
pdb|2Q9I|E Chain E, Crystal Structure Of D-dimer From Human Fibrin Complexed
With Met-his- Arg-pro-tyr-amide.
pdb|2XNX|B Chain B, Bc1 Fragment Of Streptococcal M1 Protein In Complex With
Human Fibrinogen
pdb|2XNX|E Chain E, Bc1 Fragment Of Streptococcal M1 Protein In Complex With
Human Fibrinogen
pdb|2XNX|H Chain H, Bc1 Fragment Of Streptococcal M1 Protein In Complex With
Human Fibrinogen
pdb|2XNX|K Chain K, Bc1 Fragment Of Streptococcal M1 Protein In Complex With
Human Fibrinogen
pdb|2XNY|B Chain B, A Fragment Of Streptococcal M1 Protein In Complex With
Human Fibrinogen
pdb|2XNY|E Chain E, A Fragment Of Streptococcal M1 Protein In Complex With
Human Fibrinogen
Length = 328
Score = 102 bits (253), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 69/218 (31%), Positives = 96/218 (44%), Gaps = 49/218 (22%)
Query: 250 VLCD----EHHWMTIQRRYNGMQEFNLKWTDYAQGFGSPES------------EFWIGND 293
V CD W IQ R +G +F KW Y QGFG+ + E+W+GND
Sbjct: 105 VYCDMNTENGGWTVIQNRQDGSVDFGRKWDPYKQGFGNVATNTDGKNYCGLPGEYWLGND 164
Query: 294 ALHRLTSQDNMSLRIEFVDIYGKAWYAEYDTFSVASESEGYRLNLSGYHGNASDA----- 348
+ +LT L IE D G A Y F+V +E+ Y+++++ Y G A +A
Sbjct: 165 KISQLTRMGPTELLIEMEDWKGDKVKAHYGGFTVQNEANKYQISVNKYRGTAGNALMDGA 224
Query: 349 ---------MTYQNNMKFSTIDRDNDL-----SNTHCASNYEGGWWFSHCLHANLNGKFN 394
MT N M FST DRDND C+ GGWW++ C AN NG++
Sbjct: 225 SQLMGENRTMTIHNGMFFSTYDRDNDGWLTSDPRKQCSKEDGGGWWYNRCHAANPNGRYY 284
Query: 395 LG--LTW------------FHSEKNEWMAVARSHMKIR 418
G TW + + K W ++ + MKIR
Sbjct: 285 WGGQYTWDMAKHGTDDGVVWMNWKGSWYSMRKMSMKIR 322
>pdb|2Z4E|B Chain B, Crystal Structure Of D-dimer From Human Fibrin Complexed
With Gly-his- Arg-pro-tyr-amide
pdb|2Z4E|E Chain E, Crystal Structure Of D-dimer From Human Fibrin Complexed
With Gly-his- Arg-pro-tyr-amide
Length = 326
Score = 102 bits (253), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 69/218 (31%), Positives = 96/218 (44%), Gaps = 49/218 (22%)
Query: 250 VLCD----EHHWMTIQRRYNGMQEFNLKWTDYAQGFGSPES------------EFWIGND 293
V CD W IQ R +G +F KW Y QGFG+ + E+W+GND
Sbjct: 105 VYCDMNTENGGWTVIQNRQDGSVDFGRKWDPYKQGFGNVATNTDGKNYCGLPGEYWLGND 164
Query: 294 ALHRLTSQDNMSLRIEFVDIYGKAWYAEYDTFSVASESEGYRLNLSGYHGNASDA----- 348
+ +LT L IE D G A Y F+V +E+ Y+++++ Y G A +A
Sbjct: 165 KISQLTRMGPTELLIEMEDWKGDKVKAHYGGFTVQNEANKYQISVNKYRGTAGNALMDGA 224
Query: 349 ---------MTYQNNMKFSTIDRDNDL-----SNTHCASNYEGGWWFSHCLHANLNGKFN 394
MT N M FST DRDND C+ GGWW++ C AN NG++
Sbjct: 225 SQLMGENRTMTIHNGMFFSTYDRDNDGWLTSDPRKQCSKEDGGGWWYNRCHAANPNGRYY 284
Query: 395 LG--LTW------------FHSEKNEWMAVARSHMKIR 418
G TW + + K W ++ + MKIR
Sbjct: 285 WGGQYTWDMAKHGTDDGVVWMNWKGSWYSMRKMSMKIR 322
>pdb|1LT9|B Chain B, Crystal Structure Of Recombinant Human Fibrinogen Fragment
D
pdb|1LT9|E Chain E, Crystal Structure Of Recombinant Human Fibrinogen Fragment
D
pdb|1LTJ|B Chain B, Crystal Structure Of Recombinant Human Fibrinogen Fragment
D With The Peptide Ligands Gly-Pro-Arg-Pro-Amide And
Gly-His-Arg-Pro-Amide
pdb|1LTJ|E Chain E, Crystal Structure Of Recombinant Human Fibrinogen Fragment
D With The Peptide Ligands Gly-Pro-Arg-Pro-Amide And
Gly-His-Arg-Pro-Amide
pdb|1RF0|B Chain B, Crystal Structure Of Fragment D Of Gammae132a Fibrinogen
pdb|1RF0|E Chain E, Crystal Structure Of Fragment D Of Gammae132a Fibrinogen
pdb|1RF1|B Chain B, Crystal Structure Of Fragment D Of Gammae132a Fibrinogen
With The Peptide Ligand Gly-His-Arg-Pro-Amide
pdb|1RF1|E Chain E, Crystal Structure Of Fragment D Of Gammae132a Fibrinogen
With The Peptide Ligand Gly-His-Arg-Pro-Amide
pdb|2FFD|B Chain B, Fibrinogen Fragment D With "a" Knob Peptide Mimic Gprvve
pdb|2FFD|E Chain E, Fibrinogen Fragment D With "a" Knob Peptide Mimic Gprvve
pdb|2OYH|B Chain B, Crystal Structure Of Fragment D Of Gammad298,301a
Fibrinogen With The Peptide Ligand Gly-His-Arg-Pro-Amide
pdb|2OYH|E Chain E, Crystal Structure Of Fragment D Of Gammad298,301a
Fibrinogen With The Peptide Ligand Gly-His-Arg-Pro-Amide
pdb|2OYI|B Chain B, Crystal Structure Of Fragment D Of Gammad298,301a
Fibrinogen With The Peptide Ligand Gly-Pro-Arg-Pro-Amide
pdb|2OYI|E Chain E, Crystal Structure Of Fragment D Of Gammad298,301a
Fibrinogen With The Peptide Ligand Gly-Pro-Arg-Pro-Amide
pdb|3HUS|B Chain B, Crystal Structure Of Recombinant Gamma N308k Fibrinogen
Fragment D With The Peptide Ligand Gly-Pro-Arg-Pro-Amide
pdb|3HUS|E Chain E, Crystal Structure Of Recombinant Gamma N308k Fibrinogen
Fragment D With The Peptide Ligand Gly-Pro-Arg-Pro-Amide
Length = 313
Score = 102 bits (253), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 69/218 (31%), Positives = 96/218 (44%), Gaps = 49/218 (22%)
Query: 250 VLCD----EHHWMTIQRRYNGMQEFNLKWTDYAQGFGSPES------------EFWIGND 293
V CD W IQ R +G +F KW Y QGFG+ + E+W+GND
Sbjct: 90 VYCDMNTENGGWTVIQNRQDGSVDFGRKWDPYKQGFGNVATNTDGKNYCGLPGEYWLGND 149
Query: 294 ALHRLTSQDNMSLRIEFVDIYGKAWYAEYDTFSVASESEGYRLNLSGYHGNASDA----- 348
+ +LT L IE D G A Y F+V +E+ Y+++++ Y G A +A
Sbjct: 150 KISQLTRMGPTELLIEMEDWKGDKVKAHYGGFTVQNEANKYQISVNKYRGTAGNALMDGA 209
Query: 349 ---------MTYQNNMKFSTIDRDNDL-----SNTHCASNYEGGWWFSHCLHANLNGKFN 394
MT N M FST DRDND C+ GGWW++ C AN NG++
Sbjct: 210 SQLMGENRTMTIHNGMFFSTYDRDNDGWLTSDPRKQCSKEDGGGWWYNRCHAANPNGRYY 269
Query: 395 LG--LTW------------FHSEKNEWMAVARSHMKIR 418
G TW + + K W ++ + MKIR
Sbjct: 270 WGGQYTWDMAKHGTDDGVVWMNWKGSWYSMRKMSMKIR 307
>pdb|1LWU|C Chain C, Crystal Structure Of Fragment D From Lamprey Fibrinogen
Complexed With The Peptide Gly-His-Arg-Pro-Amide
pdb|1LWU|F Chain F, Crystal Structure Of Fragment D From Lamprey Fibrinogen
Complexed With The Peptide Gly-His-Arg-Pro-Amide
pdb|1LWU|I Chain I, Crystal Structure Of Fragment D From Lamprey Fibrinogen
Complexed With The Peptide Gly-His-Arg-Pro-Amide
pdb|1LWU|L Chain L, Crystal Structure Of Fragment D From Lamprey Fibrinogen
Complexed With The Peptide Gly-His-Arg-Pro-Amide
Length = 323
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 59/159 (37%), Positives = 78/159 (49%), Gaps = 19/159 (11%)
Query: 257 WMTIQRRYNGMQEFNLKWTDYAQGFG--SPE--SEFWIGNDALHRLTSQDNMSLRIEFVD 312
W IQ R++G F W Y +GFG +P +EFW+GN+ +H LT Q LRI+ D
Sbjct: 113 WTVIQHRHDGSVNFTRDWVSYREGFGYLAPTLTTEFWLGNEKIHLLTGQQAYRLRIDLTD 172
Query: 313 IYGKAWYAEYDTFSVASESEGYRL----NLSGYHGNASDAMTYQNN-----------MKF 357
YA+Y F + ES+ YRL L G GNA D + ++ M F
Sbjct: 173 WENTHRYADYGHFKLTPESDEYRLFYSMYLDGDAGNAFDGFDFGDDPQDKFYTTHLGMLF 232
Query: 358 STIDRDNDLSNTHCASNYEGGWWFSHCLHANLNGKFNLG 396
ST +RDND CA GWW + C +LNGK+ G
Sbjct: 233 STPERDNDKYEGSCAEQDGSGWWMNRCHAGHLNGKYYFG 271
>pdb|3BVH|B Chain B, Crystal Structure Of Recombinant Gammad364a Fibrinogen
Fragment D With The Peptide Ligand Gly-Pro-Arg-Pro-Amide
pdb|3BVH|E Chain E, Crystal Structure Of Recombinant Gammad364a Fibrinogen
Fragment D With The Peptide Ligand Gly-Pro-Arg-Pro-Amide
Length = 298
Score = 100 bits (250), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 69/218 (31%), Positives = 96/218 (44%), Gaps = 49/218 (22%)
Query: 250 VLCD----EHHWMTIQRRYNGMQEFNLKWTDYAQGFGSPES------------EFWIGND 293
V CD W IQ R +G +F KW Y QGFG+ + E+W+GND
Sbjct: 78 VYCDMNTENGGWTVIQNRQDGSVDFGRKWDPYKQGFGNVATNTDGKNYCGLPGEYWLGND 137
Query: 294 ALHRLTSQDNMSLRIEFVDIYGKAWYAEYDTFSVASESEGYRLNLSGYHGNASDA----- 348
+ +LT L IE D G A Y F+V +E+ Y+++++ Y G A +A
Sbjct: 138 KISQLTRMGPTELLIEMEDWKGDKVKAHYGGFTVQNEANKYQISVNKYRGTAGNALMDGA 197
Query: 349 ---------MTYQNNMKFSTIDRDNDL-----SNTHCASNYEGGWWFSHCLHANLNGKFN 394
MT N M FST DRDND C+ GGWW++ C AN NG++
Sbjct: 198 SQLMGENRTMTIHNGMFFSTYDRDNDGWLTSDPRKQCSKEDGGGWWYNRCHAANPNGRYY 257
Query: 395 LG--LTW------------FHSEKNEWMAVARSHMKIR 418
G TW + + K W ++ + MKIR
Sbjct: 258 WGGQYTWDMAKHGTDDGVVWMNWKGSWYSMRKMSMKIR 295
>pdb|1N73|C Chain C, Fibrin D-Dimer, Lamprey Complexed With The Peptide Ligand:
Gly-His- Arg-Pro-Amide
pdb|1N73|F Chain F, Fibrin D-Dimer, Lamprey Complexed With The Peptide Ligand:
Gly-His- Arg-Pro-Amide
Length = 330
Score = 100 bits (249), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 59/159 (37%), Positives = 78/159 (49%), Gaps = 19/159 (11%)
Query: 257 WMTIQRRYNGMQEFNLKWTDYAQGFG--SPE--SEFWIGNDALHRLTSQDNMSLRIEFVD 312
W IQ R++G F W Y +GFG +P +EFW+GN+ +H LT Q LRI+ D
Sbjct: 113 WTVIQHRHDGSVNFTRDWVSYREGFGYLAPTLTTEFWLGNEKIHLLTGQQAYRLRIDLTD 172
Query: 313 IYGKAWYAEYDTFSVASESEGYRL----NLSGYHGNASDAMTYQNN-----------MKF 357
YA+Y F + ES+ YRL L G GNA D + ++ M F
Sbjct: 173 WENTHRYADYGHFKLTPESDEYRLFYSMYLDGDAGNAFDGFDFGDDPQDKFYTTHLGMLF 232
Query: 358 STIDRDNDLSNTHCASNYEGGWWFSHCLHANLNGKFNLG 396
ST +RDND CA GWW + C +LNGK+ G
Sbjct: 233 STPERDNDKYEGSCAEQDGSGWWMNRCHAGHLNGKYYFG 271
>pdb|1N86|C Chain C, Crystal Structure Of Human D-Dimer From Cross-Linked
Fibrin Complexed With Gpr And Ghrpldk Peptide Ligands.
pdb|1N86|F Chain F, Crystal Structure Of Human D-Dimer From Cross-Linked
Fibrin Complexed With Gpr And Ghrpldk Peptide Ligands.
pdb|1N8E|C Chain C, Fragment Double-D From Human Fibrin
pdb|1N8E|F Chain F, Fragment Double-D From Human Fibrin
pdb|2HLO|C Chain C, Crystal Structure Of Fragment D-Dimer From Human Fibrin
Complexed With Gly-Hydroxypro-Arg-Pro-Amide
pdb|2HLO|F Chain F, Crystal Structure Of Fragment D-Dimer From Human Fibrin
Complexed With Gly-Hydroxypro-Arg-Pro-Amide
pdb|2Z4E|C Chain C, Crystal Structure Of D-dimer From Human Fibrin Complexed
With Gly-his- Arg-pro-tyr-amide
pdb|2Z4E|F Chain F, Crystal Structure Of D-dimer From Human Fibrin Complexed
With Gly-his- Arg-pro-tyr-amide
pdb|2Q9I|C Chain C, Crystal Structure Of D-dimer From Human Fibrin Complexed
With Met-his- Arg-pro-tyr-amide.
pdb|2Q9I|F Chain F, Crystal Structure Of D-dimer From Human Fibrin Complexed
With Met-his- Arg-pro-tyr-amide
Length = 324
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 83/293 (28%), Positives = 133/293 (45%), Gaps = 55/293 (18%)
Query: 169 STLATLQEKVEANNIIMQALRNGRSEGLSLSSQLDDSKNLSPETIMQQMNKIHDSYLQVV 228
S++ LQE +NN Q + N + + L +Q + +T+ +IHD +
Sbjct: 18 SSIRYLQEIYNSNN---QKIVNLKEKVAQLEAQCQEP---CKDTV-----QIHDITGKDC 66
Query: 229 GKLPNDCEGHSGLQLISLGRS-----VLCD----EHHWMTIQRRYNGMQEFNLKWTDYAQ 279
+ N SGL I ++ V C+ + W Q+R +G +F W Y +
Sbjct: 67 QDIANKGAKQSGLYFIKPLKANQQFLVYCEIDGSGNGWTVFQKRLDGSVDFKKNWIQYKE 126
Query: 280 GFG--SPE--SEFWIGNDALHRLTSQDNM--SLRIEFVDIYGKAWYAEYDTFSVASESEG 333
GFG SP +EFW+GN+ +H +++Q + +LR+E D G+ A+Y F V E++
Sbjct: 127 GFGHLSPTGTTEFWLGNEKIHLISTQSAIPYALRVELEDWNGRTSTADYAMFKVGPEADK 186
Query: 334 YRLNLSGY-HGNASDAM--------------TYQNNMKFSTIDRDNDLSNTHCASNYEGG 378
YRL + + G+A DA T N M+FST D DND +CA G
Sbjct: 187 YRLTYAYFAGGDAGDAFDGFDFGDDPSDKFFTSHNGMQFSTWDNDNDKFEGNCAEQDGSG 246
Query: 379 WWFSHCLHANLNGKFNLGLTW--------------FHSEKNEWMAVARSHMKI 417
WW + C +LNG + G T+ + + K W ++ ++ MKI
Sbjct: 247 WWMNKCHAGHLNGVYYQGGTYSKASTPNGYDNGIIWATWKTRWYSMKKTTMKI 299
>pdb|1RF0|C Chain C, Crystal Structure Of Fragment D Of Gammae132a Fibrinogen
pdb|1RF0|F Chain F, Crystal Structure Of Fragment D Of Gammae132a Fibrinogen
pdb|1RF1|C Chain C, Crystal Structure Of Fragment D Of Gammae132a Fibrinogen
With The Peptide Ligand Gly-His-Arg-Pro-Amide
pdb|1RF1|F Chain F, Crystal Structure Of Fragment D Of Gammae132a Fibrinogen
With The Peptide Ligand Gly-His-Arg-Pro-Amide
Length = 311
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 83/293 (28%), Positives = 134/293 (45%), Gaps = 55/293 (18%)
Query: 169 STLATLQEKVEANNIIMQALRNGRSEGLSLSSQLDDSKNLSPETIMQQMNKIHDSYLQVV 228
S++ LQE +NN Q + N + + L++Q + +T+ +IHD +
Sbjct: 10 SSIRYLQEIYNSNN---QKIVNLKEKVAQLAAQCQEP---CKDTV-----QIHDITGKDC 58
Query: 229 GKLPNDCEGHSGLQLISLGRS-----VLCD----EHHWMTIQRRYNGMQEFNLKWTDYAQ 279
+ N SGL I ++ V C+ + W Q+R +G +F W Y +
Sbjct: 59 QDIANKGAKQSGLYFIKPLKANQQFLVYCEIDGSGNGWTVFQKRLDGSVDFKKNWIQYKE 118
Query: 280 GFG--SPE--SEFWIGNDALHRLTSQDNM--SLRIEFVDIYGKAWYAEYDTFSVASESEG 333
GFG SP +EFW+GN+ +H +++Q + +LR+E D G+ A+Y F V E++
Sbjct: 119 GFGHLSPTGTTEFWLGNEKIHLISTQSAIPYALRVELEDWNGRTSTADYAMFKVGPEADK 178
Query: 334 YRLNLSGY-HGNASDAM--------------TYQNNMKFSTIDRDNDLSNTHCASNYEGG 378
YRL + + G+A DA T N M+FST D DND +CA G
Sbjct: 179 YRLTYAYFAGGDAGDAFDGFDFGDDPSDKFFTSHNGMQFSTWDNDNDKFEGNCAEQDGSG 238
Query: 379 WWFSHCLHANLNGKFNLGLTW--------------FHSEKNEWMAVARSHMKI 417
WW + C +LNG + G T+ + + K W ++ ++ MKI
Sbjct: 239 WWMNKCHAGHLNGVYYQGGTYSKASTPNGYDNGIIWATWKTRWYSMKKTTMKI 291
>pdb|1FZA|C Chain C, Crystal Structure Of Fibrinogen Fragment D
pdb|1FZA|F Chain F, Crystal Structure Of Fibrinogen Fragment D
pdb|1FZB|C Chain C, Crystal Structure Of Crosslinked Fragment D
pdb|1FZB|F Chain F, Crystal Structure Of Crosslinked Fragment D
pdb|1FZC|C Chain C, Crystal Structure Of Fragment Double-d From Human Fibrin
With Two Different Bound Ligands
pdb|1FZC|F Chain F, Crystal Structure Of Fragment Double-d From Human Fibrin
With Two Different Bound Ligands
pdb|1FZE|C Chain C, Crystal Structure Of Fragment Double-D From Human Fibrin
pdb|1FZE|F Chain F, Crystal Structure Of Fragment Double-D From Human Fibrin
pdb|1FZF|C Chain C, Crystal Structure Of Fragment Double-D From Human Fibrin
With The Peptide Ligand Gly-His-Arg-Pro-Amide
pdb|1FZF|F Chain F, Crystal Structure Of Fragment Double-D From Human Fibrin
With The Peptide Ligand Gly-His-Arg-Pro-Amide
pdb|1FZG|C Chain C, Crystal Structure Of Fragment D From Human Fibrinogen With
The Peptide Ligand Gly-His-Arg-Pro-Amide
pdb|1FZG|F Chain F, Crystal Structure Of Fragment D From Human Fibrinogen With
The Peptide Ligand Gly-His-Arg-Pro-Amide
pdb|3E1I|C Chain C, Crystal Structure Of Bbetad432a Variant Fibrinogen
Fragment D With The Peptide Ligand Gly-His-Arg-Pro-Amide
pdb|3E1I|F Chain F, Crystal Structure Of Bbetad432a Variant Fibrinogen
Fragment D With The Peptide Ligand Gly-His-Arg-Pro-Amide
pdb|2XNX|C Chain C, Bc1 Fragment Of Streptococcal M1 Protein In Complex With
Human Fibrinogen
pdb|2XNX|F Chain F, Bc1 Fragment Of Streptococcal M1 Protein In Complex With
Human Fibrinogen
pdb|2XNX|I Chain I, Bc1 Fragment Of Streptococcal M1 Protein In Complex With
Human Fibrinogen
pdb|2XNX|L Chain L, Bc1 Fragment Of Streptococcal M1 Protein In Complex With
Human Fibrinogen
pdb|2XNY|C Chain C, A Fragment Of Streptococcal M1 Protein In Complex With
Human Fibrinogen
pdb|2XNY|F Chain F, A Fragment Of Streptococcal M1 Protein In Complex With
Human Fibrinogen
Length = 319
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 83/293 (28%), Positives = 133/293 (45%), Gaps = 55/293 (18%)
Query: 169 STLATLQEKVEANNIIMQALRNGRSEGLSLSSQLDDSKNLSPETIMQQMNKIHDSYLQVV 228
S++ LQE +NN Q + N + + L +Q + +T+ +IHD +
Sbjct: 18 SSIRYLQEIYNSNN---QKIVNLKEKVAQLEAQCQEP---CKDTV-----QIHDITGKDC 66
Query: 229 GKLPNDCEGHSGLQLISLGRS-----VLCD----EHHWMTIQRRYNGMQEFNLKWTDYAQ 279
+ N SGL I ++ V C+ + W Q+R +G +F W Y +
Sbjct: 67 QDIANKGAKQSGLYFIKPLKANQQFLVYCEIDGSGNGWTVFQKRLDGSVDFKKNWIQYKE 126
Query: 280 GFG--SPE--SEFWIGNDALHRLTSQDNM--SLRIEFVDIYGKAWYAEYDTFSVASESEG 333
GFG SP +EFW+GN+ +H +++Q + +LR+E D G+ A+Y F V E++
Sbjct: 127 GFGHLSPTGTTEFWLGNEKIHLISTQSAIPYALRVELEDWNGRTSTADYAMFKVGPEADK 186
Query: 334 YRLNLSGY-HGNASDAM--------------TYQNNMKFSTIDRDNDLSNTHCASNYEGG 378
YRL + + G+A DA T N M+FST D DND +CA G
Sbjct: 187 YRLTYAYFAGGDAGDAFDGFDFGDDPSDKFFTSHNGMQFSTWDNDNDKFEGNCAEQDGSG 246
Query: 379 WWFSHCLHANLNGKFNLGLTW--------------FHSEKNEWMAVARSHMKI 417
WW + C +LNG + G T+ + + K W ++ ++ MKI
Sbjct: 247 WWMNKCHAGHLNGVYYQGGTYSKASTPNGYDNGIIWATWKTRWYSMKKTTMKI 299
>pdb|2H43|C Chain C, Crystal Structure Of Human Fragment D Complexed With
Ala-His-Arg-Pro- Amide
pdb|2H43|F Chain F, Crystal Structure Of Human Fragment D Complexed With
Ala-His-Arg-Pro- Amide
pdb|2HOD|C Chain C, Crystal Structure Of Fragment D From Human Fibrinogen
Complexed With Gly-hydroxypro-arg-pro-amide
pdb|2HOD|F Chain F, Crystal Structure Of Fragment D From Human Fibrinogen
Complexed With Gly-hydroxypro-arg-pro-amide
pdb|2HOD|I Chain I, Crystal Structure Of Fragment D From Human Fibrinogen
Complexed With Gly-hydroxypro-arg-pro-amide
pdb|2HOD|L Chain L, Crystal Structure Of Fragment D From Human Fibrinogen
Complexed With Gly-hydroxypro-arg-pro-amide
pdb|2HPC|C Chain C, Crystal Structure Of Fragment D From Human Fibrinogen
Complexed With Gly-Pro-Arg-Pro-Amide.
pdb|2HPC|F Chain F, Crystal Structure Of Fragment D From Human Fibrinogen
Complexed With Gly-Pro-Arg-Pro-Amide.
pdb|2HPC|I Chain I, Crystal Structure Of Fragment D From Human Fibrinogen
Complexed With Gly-Pro-Arg-Pro-Amide.
pdb|2HPC|L Chain L, Crystal Structure Of Fragment D From Human Fibrinogen
Complexed With Gly-Pro-Arg-Pro-Amide
Length = 323
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 83/293 (28%), Positives = 133/293 (45%), Gaps = 55/293 (18%)
Query: 169 STLATLQEKVEANNIIMQALRNGRSEGLSLSSQLDDSKNLSPETIMQQMNKIHDSYLQVV 228
S++ LQE +NN Q + N + + L +Q + +T+ +IHD +
Sbjct: 17 SSIRYLQEIYNSNN---QKIVNLKEKVAQLEAQCQEP---CKDTV-----QIHDITGKDC 65
Query: 229 GKLPNDCEGHSGLQLISLGRS-----VLCD----EHHWMTIQRRYNGMQEFNLKWTDYAQ 279
+ N SGL I ++ V C+ + W Q+R +G +F W Y +
Sbjct: 66 QDIANKGAKQSGLYFIKPLKANQQFLVYCEIDGSGNGWTVFQKRLDGSVDFKKNWIQYKE 125
Query: 280 GFG--SPE--SEFWIGNDALHRLTSQDNM--SLRIEFVDIYGKAWYAEYDTFSVASESEG 333
GFG SP +EFW+GN+ +H +++Q + +LR+E D G+ A+Y F V E++
Sbjct: 126 GFGHLSPTGTTEFWLGNEKIHLISTQSAIPYALRVELEDWNGRTSTADYAMFKVGPEADK 185
Query: 334 YRLNLSGY-HGNASDAM--------------TYQNNMKFSTIDRDNDLSNTHCASNYEGG 378
YRL + + G+A DA T N M+FST D DND +CA G
Sbjct: 186 YRLTYAYFAGGDAGDAFDGFDFGDDPSDKFFTSHNGMQFSTWDNDNDKFEGNCAEQDGSG 245
Query: 379 WWFSHCLHANLNGKFNLGLTW--------------FHSEKNEWMAVARSHMKI 417
WW + C +LNG + G T+ + + K W ++ ++ MKI
Sbjct: 246 WWMNKCHAGHLNGVYYQGGTYSKASTPNGYDNGIIWATWKTRWYSMKKTTMKI 298
>pdb|3BVH|C Chain C, Crystal Structure Of Recombinant Gammad364a Fibrinogen
Fragment D With The Peptide Ligand Gly-Pro-Arg-Pro-Amide
pdb|3BVH|F Chain F, Crystal Structure Of Recombinant Gammad364a Fibrinogen
Fragment D With The Peptide Ligand Gly-Pro-Arg-Pro-Amide
Length = 293
Score = 99.8 bits (247), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 83/293 (28%), Positives = 133/293 (45%), Gaps = 55/293 (18%)
Query: 169 STLATLQEKVEANNIIMQALRNGRSEGLSLSSQLDDSKNLSPETIMQQMNKIHDSYLQVV 228
S++ LQE +NN Q + N + + L +Q + +T+ +IHD +
Sbjct: 4 SSIRYLQEIYNSNN---QKIVNLKEKVAQLEAQCQEP---CKDTV-----QIHDITGKDC 52
Query: 229 GKLPNDCEGHSGLQLISLGRS-----VLCD----EHHWMTIQRRYNGMQEFNLKWTDYAQ 279
+ N SGL I ++ V C+ + W Q+R +G +F W Y +
Sbjct: 53 QDIANKGAKQSGLYFIKPLKANQQFLVYCEIDGSGNGWTVFQKRLDGSVDFKKNWIQYKE 112
Query: 280 GFG--SPE--SEFWIGNDALHRLTSQDNM--SLRIEFVDIYGKAWYAEYDTFSVASESEG 333
GFG SP +EFW+GN+ +H +++Q + +LR+E D G+ A+Y F V E++
Sbjct: 113 GFGHLSPTGTTEFWLGNEKIHLISTQSAIPYALRVELEDWNGRTSTADYAMFKVGPEADK 172
Query: 334 YRLNLSGY-HGNASDAM--------------TYQNNMKFSTIDRDNDLSNTHCASNYEGG 378
YRL + + G+A DA T N M+FST D DND +CA G
Sbjct: 173 YRLTYAYFAGGDAGDAFDGFDFGDDPSDKFFTSHNGMQFSTWDNDNDKFEGNCAEQDGSG 232
Query: 379 WWFSHCLHANLNGKFNLGLTW--------------FHSEKNEWMAVARSHMKI 417
WW + C +LNG + G T+ + + K W ++ ++ MKI
Sbjct: 233 WWMNKCHAGHLNGVYYQGGTYSKASTPNGYANGIIWATWKTRWYSMKKTTMKI 285
>pdb|1EI3|B Chain B, Crystal Structure Of Native Chicken Fibrinogen
pdb|1EI3|E Chain E, Crystal Structure Of Native Chicken Fibrinogen
pdb|1M1J|B Chain B, Crystal Structure Of Native Chicken Fibrinogen With Two
Different Bound Ligands
pdb|1M1J|E Chain E, Crystal Structure Of Native Chicken Fibrinogen With Two
Different Bound Ligands
Length = 464
Score = 99.4 bits (246), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 64/210 (30%), Positives = 92/210 (43%), Gaps = 44/210 (20%)
Query: 253 DEHHWMTIQRRYNGMQEFNLKWTDYAQGFGS-----------PESEFWIGNDALHRLTSQ 301
D W IQ R +G F W +Y +GFG+ E+W+GND + +LT
Sbjct: 250 DNGGWTLIQNRQDGSVNFGRAWDEYKRGFGNIAKSGGKKYCDTPGEYWLGNDKISQLTKI 309
Query: 302 DNMSLRIEFVDIYGKAWYAEYDTFSVASESEGYRLNLSGYHGNASDA------------- 348
+ IE D G A Y F++ +E Y+L++S Y GNA +A
Sbjct: 310 GPTKVLIEMEDWNGDKVSALYGGFTIHNEGNKYQLSVSNYKGNAGNALMEGASQLYGENR 369
Query: 349 -MTYQNNMKFSTIDRDNDL-----SNTHCASNYEGGWWFSHCLHANLNGKFNLGLTW--- 399
MT N M FST DRDND C+ GGWW++ C AN NG++ G T+
Sbjct: 370 TMTIHNGMYFSTYDRDNDGWLTTDPRKQCSKEDGGGWWYNRCHAANPNGRYYWGGTYSWD 429
Query: 400 -----------FHSEKNEWMAVARSHMKIR 418
+ + K W ++ + MKI+
Sbjct: 430 MAKHGTDDGIVWMNWKGSWYSMKKMSMKIK 459
>pdb|2OYH|C Chain C, Crystal Structure Of Fragment D Of Gammad298,301a
Fibrinogen With The Peptide Ligand Gly-His-Arg-Pro-Amide
pdb|2OYH|F Chain F, Crystal Structure Of Fragment D Of Gammad298,301a
Fibrinogen With The Peptide Ligand Gly-His-Arg-Pro-Amide
pdb|2OYI|C Chain C, Crystal Structure Of Fragment D Of Gammad298,301a
Fibrinogen With The Peptide Ligand Gly-Pro-Arg-Pro-Amide
pdb|2OYI|F Chain F, Crystal Structure Of Fragment D Of Gammad298,301a
Fibrinogen With The Peptide Ligand Gly-Pro-Arg-Pro-Amide
Length = 311
Score = 99.4 bits (246), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 83/293 (28%), Positives = 133/293 (45%), Gaps = 55/293 (18%)
Query: 169 STLATLQEKVEANNIIMQALRNGRSEGLSLSSQLDDSKNLSPETIMQQMNKIHDSYLQVV 228
S++ LQE +NN Q + N + + L +Q + +T+ +IHD +
Sbjct: 10 SSIRYLQEIYNSNN---QKIVNLKEKVAQLEAQCQEP---CKDTV-----QIHDITGKDC 58
Query: 229 GKLPNDCEGHSGLQLISLGRS-----VLCD----EHHWMTIQRRYNGMQEFNLKWTDYAQ 279
+ N SGL I ++ V C+ + W Q+R +G +F W Y +
Sbjct: 59 QDIANKGAKQSGLYFIKPLKANQQFLVYCEIDGSGNGWTVFQKRLDGSVDFKKNWIQYKE 118
Query: 280 GFG--SPE--SEFWIGNDALHRLTSQDNM--SLRIEFVDIYGKAWYAEYDTFSVASESEG 333
GFG SP +EFW+GN+ +H +++Q + +LR+E D G+ A+Y F V E++
Sbjct: 119 GFGHLSPTGTTEFWLGNEKIHLISTQSAIPYALRVELEDWNGRTSTADYAMFKVGPEADK 178
Query: 334 YRLNLSGY-HGNASDAM--------------TYQNNMKFSTIDRDNDLSNTHCASNYEGG 378
YRL + + G+A DA T N M+FST D DND +CA G
Sbjct: 179 YRLTYAYFAGGDAGDAFDGFDFGDAPSAKFFTSHNGMQFSTWDNDNDKFEGNCAEQDGSG 238
Query: 379 WWFSHCLHANLNGKFNLGLTW--------------FHSEKNEWMAVARSHMKI 417
WW + C +LNG + G T+ + + K W ++ ++ MKI
Sbjct: 239 WWMNKCHAGHLNGVYYQGGTYSKASTPNGYDNGIIWATWKTRWYSMKKTTMKI 291
>pdb|1LT9|C Chain C, Crystal Structure Of Recombinant Human Fibrinogen Fragment
D
pdb|1LT9|F Chain F, Crystal Structure Of Recombinant Human Fibrinogen Fragment
D
pdb|1LTJ|C Chain C, Crystal Structure Of Recombinant Human Fibrinogen Fragment
D With The Peptide Ligands Gly-Pro-Arg-Pro-Amide And
Gly-His-Arg-Pro-Amide
pdb|1LTJ|F Chain F, Crystal Structure Of Recombinant Human Fibrinogen Fragment
D With The Peptide Ligands Gly-Pro-Arg-Pro-Amide And
Gly-His-Arg-Pro-Amide
pdb|1RE3|C Chain C, Crystal Structure Of Fragment D Of Bbetad398a Fibrinogen
With The Peptide Ligand Gly-his-arg-pro-amide
pdb|1RE3|F Chain F, Crystal Structure Of Fragment D Of Bbetad398a Fibrinogen
With The Peptide Ligand Gly-his-arg-pro-amide
pdb|1RE4|C Chain C, Crystal Structure Of Fragment D Of Bbetad398a Fibrinogen
pdb|1RE4|F Chain F, Crystal Structure Of Fragment D Of Bbetad398a Fibrinogen
pdb|2FFD|C Chain C, Fibrinogen Fragment D With "a" Knob Peptide Mimic Gprvve
pdb|2FFD|F Chain F, Fibrinogen Fragment D With "a" Knob Peptide Mimic Gprvve
Length = 311
Score = 99.4 bits (246), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 83/293 (28%), Positives = 133/293 (45%), Gaps = 55/293 (18%)
Query: 169 STLATLQEKVEANNIIMQALRNGRSEGLSLSSQLDDSKNLSPETIMQQMNKIHDSYLQVV 228
S++ LQE +NN Q + N + + L +Q + +T+ +IHD +
Sbjct: 10 SSIRYLQEIYNSNN---QKIVNLKEKVAQLEAQCQEP---CKDTV-----QIHDITGKDC 58
Query: 229 GKLPNDCEGHSGLQLISLGRS-----VLCD----EHHWMTIQRRYNGMQEFNLKWTDYAQ 279
+ N SGL I ++ V C+ + W Q+R +G +F W Y +
Sbjct: 59 QDIANKGAKQSGLYFIKPLKANQQFLVYCEIDGSGNGWTVFQKRLDGSVDFKKNWIQYKE 118
Query: 280 GFG--SPE--SEFWIGNDALHRLTSQDNM--SLRIEFVDIYGKAWYAEYDTFSVASESEG 333
GFG SP +EFW+GN+ +H +++Q + +LR+E D G+ A+Y F V E++
Sbjct: 119 GFGHLSPTGTTEFWLGNEKIHLISTQSAIPYALRVELEDWNGRTSTADYAMFKVGPEADK 178
Query: 334 YRLNLSGY-HGNASDAM--------------TYQNNMKFSTIDRDNDLSNTHCASNYEGG 378
YRL + + G+A DA T N M+FST D DND +CA G
Sbjct: 179 YRLTYAYFAGGDAGDAFDGFDFGDDPSDKFFTSHNGMQFSTWDNDNDKFEGNCAEQDGSG 238
Query: 379 WWFSHCLHANLNGKFNLGLTW--------------FHSEKNEWMAVARSHMKI 417
WW + C +LNG + G T+ + + K W ++ ++ MKI
Sbjct: 239 WWMNKCHAGHLNGVYYQGGTYSKASTPNGYDNGIIWATWKTRWYSMKKTTMKI 291
>pdb|3H32|C Chain C, Crystal Structure Of D-Dimer From Human Fibrin Complexed
With Gly-His- Arg-Pro-Tyr-Amide
pdb|3H32|F Chain F, Crystal Structure Of D-Dimer From Human Fibrin Complexed
With Gly-His- Arg-Pro-Tyr-Amide
Length = 317
Score = 99.4 bits (246), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 83/293 (28%), Positives = 133/293 (45%), Gaps = 55/293 (18%)
Query: 169 STLATLQEKVEANNIIMQALRNGRSEGLSLSSQLDDSKNLSPETIMQQMNKIHDSYLQVV 228
S++ LQE +NN Q + N + + L +Q + +T+ +IHD +
Sbjct: 11 SSIRYLQEIYNSNN---QKIVNLKEKVAQLEAQCQEP---CKDTV-----QIHDITGKDC 59
Query: 229 GKLPNDCEGHSGLQLISLGRS-----VLCD----EHHWMTIQRRYNGMQEFNLKWTDYAQ 279
+ N SGL I ++ V C+ + W Q+R +G +F W Y +
Sbjct: 60 QDIANKGAKQSGLYFIKPLKANQQFLVYCEIDGSGNGWTVFQKRLDGSVDFKKNWIQYKE 119
Query: 280 GFG--SPE--SEFWIGNDALHRLTSQDNM--SLRIEFVDIYGKAWYAEYDTFSVASESEG 333
GFG SP +EFW+GN+ +H +++Q + +LR+E D G+ A+Y F V E++
Sbjct: 120 GFGHLSPTGTTEFWLGNEKIHLISTQSAIPYALRVELEDWNGRTSTADYAMFKVGPEADK 179
Query: 334 YRLNLSGY-HGNASDAM--------------TYQNNMKFSTIDRDNDLSNTHCASNYEGG 378
YRL + + G+A DA T N M+FST D DND +CA G
Sbjct: 180 YRLTYAYFAGGDAGDAFDGFDFGDDPSDKFFTSHNGMQFSTWDNDNDKFEGNCAEQDGSG 239
Query: 379 WWFSHCLHANLNGKFNLGLTW--------------FHSEKNEWMAVARSHMKI 417
WW + C +LNG + G T+ + + K W ++ ++ MKI
Sbjct: 240 WWMNKCHAGHLNGVYYQGGTYSKASTPNGYDNGIIWATWKTRWYSMKKTTMKI 292
>pdb|3HUS|C Chain C, Crystal Structure Of Recombinant Gamma N308k Fibrinogen
Fragment D With The Peptide Ligand Gly-Pro-Arg-Pro-Amide
pdb|3HUS|F Chain F, Crystal Structure Of Recombinant Gamma N308k Fibrinogen
Fragment D With The Peptide Ligand Gly-Pro-Arg-Pro-Amide
Length = 311
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 82/293 (27%), Positives = 132/293 (45%), Gaps = 55/293 (18%)
Query: 169 STLATLQEKVEANNIIMQALRNGRSEGLSLSSQLDDSKNLSPETIMQQMNKIHDSYLQVV 228
S++ LQE +NN Q + N + + L +Q + +T+ +IHD +
Sbjct: 10 SSIRYLQEIYNSNN---QKIVNLKEKVAQLEAQCQEP---CKDTV-----QIHDITGKDC 58
Query: 229 GKLPNDCEGHSGLQLISLGRS-----VLCD----EHHWMTIQRRYNGMQEFNLKWTDYAQ 279
+ N SGL I ++ V C+ + W Q+R +G +F W Y +
Sbjct: 59 QDIANKGAKQSGLYFIKPLKANQQFLVYCEIDGSGNGWTVFQKRLDGSVDFKKNWIQYKE 118
Query: 280 GFG--SPE--SEFWIGNDALHRLTSQDNM--SLRIEFVDIYGKAWYAEYDTFSVASESEG 333
GFG SP +EFW+GN+ +H +++Q + +LR+E D G+ A+Y F V E++
Sbjct: 119 GFGHLSPTGTTEFWLGNEKIHLISTQSAIPYALRVELEDWNGRTSTADYAMFKVGPEADK 178
Query: 334 YRLNLSGY-HGNASDAM--------------TYQNNMKFSTIDRDNDLSNTHCASNYEGG 378
YRL + + G+A DA T M+FST D DND +CA G
Sbjct: 179 YRLTYAYFAGGDAGDAFDGFDFGDDPSDKFFTSHKGMQFSTWDNDNDKFEGNCAEQDGSG 238
Query: 379 WWFSHCLHANLNGKFNLGLTW--------------FHSEKNEWMAVARSHMKI 417
WW + C +LNG + G T+ + + K W ++ ++ MKI
Sbjct: 239 WWMNKCHAGHLNGVYYQGGTYSKASTPNGYDNGIIWATWKTRWYSMKKTTMKI 291
>pdb|1FIC|A Chain A, Structure Of Human Gamma Fibrinogen 30 Kd Carboxyl
Terminal Fragment
pdb|1FIC|B Chain B, Structure Of Human Gamma Fibrinogen 30 Kd Carboxyl
Terminal Fragment
pdb|2FIB|A Chain A, Recombinant Human Gamma-Fibrinogen Carboxyl Terminal
Fragment (Residues 143-411) Complexed To The Peptide
Gly- Pro-Arg-Pro At Ph 6.0
pdb|1FIB|A Chain A, Recombinant Human Gamma-Fibrinogen Carboxyl Terminal
Fragment (Residues 143-411) Bound To Calcium At Ph 6.0
pdb|1FID|A Chain A, Structure Of Human Gamma Fibrinogen 30 Kd Carboxyl
Terminal Fragment
Length = 269
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 72/243 (29%), Positives = 112/243 (46%), Gaps = 44/243 (18%)
Query: 219 KIHDSYLQVVGKLPNDCEGHSGLQLISLGRS-----VLCD----EHHWMTIQRRYNGMQE 269
+IHD + + N SGL I ++ V C+ + W Q+R +G +
Sbjct: 2 QIHDITGKDCQDIANKGAKQSGLYFIKPLKANQQFLVYCEIDGSGNGWTVFQKRLDGSVD 61
Query: 270 FNLKWTDYAQGFG--SPE--SEFWIGNDALHRLTSQDNM--SLRIEFVDIYGKAWYAEYD 323
F W Y +GFG SP +EFW+GN+ +H +++Q + +LR+E D G+ A+Y
Sbjct: 62 FKKNWIQYKEGFGHLSPTGTTEFWLGNEKIHLISTQSAIPYALRVELEDWNGRTSTADYA 121
Query: 324 TFSVASESEGYRLNLSGY-HGNASDAM--------------TYQNNMKFSTIDRDNDLSN 368
F V E++ YRL + + G+A DA T N M+FST D DND
Sbjct: 122 MFKVGPEADKYRLTYAYFAGGDAGDAFDGFDFGDDPSDKFFTSHNGMQFSTWDNDNDKFE 181
Query: 369 THCASNYEGGWWFSHCLHANLNGKFNLGLTW--------------FHSEKNEWMAVARSH 414
+CA GWW + C +LNG + G T+ + + K W ++ ++
Sbjct: 182 GNCAEQDGSGWWMNKCHAGHLNGVYYQGGTYSKASTPNGYDNGIIWATWKTRWYSMKKTT 241
Query: 415 MKI 417
MKI
Sbjct: 242 MKI 244
>pdb|3FIB|A Chain A, Recombinant Human Gamma-fibrinogen Carboxyl Terminal
Fragment (residues 143-411) Bound To Calcium At Ph 6.0:
A Further Refinement Of Pdb Entry 1fib, And Differs From
1fib By The Modelling Of A Cis Peptide Bond Between
Residues K338 And C339
Length = 249
Score = 96.3 bits (238), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 72/243 (29%), Positives = 112/243 (46%), Gaps = 44/243 (18%)
Query: 219 KIHDSYLQVVGKLPNDCEGHSGLQLISLGRS-----VLCD----EHHWMTIQRRYNGMQE 269
+IHD + + N SGL I ++ V C+ + W Q+R +G +
Sbjct: 1 QIHDITGKDCQDIANKGAKQSGLYFIKPLKANQQFLVYCEIDGSGNGWTVFQKRLDGSVD 60
Query: 270 FNLKWTDYAQGFG--SPE--SEFWIGNDALHRLTSQDNM--SLRIEFVDIYGKAWYAEYD 323
F W Y +GFG SP +EFW+GN+ +H +++Q + +LR+E D G+ A+Y
Sbjct: 61 FKKNWIQYKEGFGHLSPTGTTEFWLGNEKIHLISTQSAIPYALRVELEDWNGRTSTADYA 120
Query: 324 TFSVASESEGYRLNLSGY-HGNASDAM--------------TYQNNMKFSTIDRDNDLSN 368
F V E++ YRL + + G+A DA T N M+FST D DND
Sbjct: 121 MFKVGPEADKYRLTYAYFAGGDAGDAFDGFDFGDDPSDKFFTSHNGMQFSTWDNDNDKFE 180
Query: 369 THCASNYEGGWWFSHCLHANLNGKFNLGLTW--------------FHSEKNEWMAVARSH 414
+CA GWW + C +LNG + G T+ + + K W ++ ++
Sbjct: 181 GNCAEQDGSGWWMNKCHAGHLNGVYYQGGTYSKASTPNGYDNGIIWATWKTRWYSMKKTT 240
Query: 415 MKI 417
MKI
Sbjct: 241 MKI 243
>pdb|2XPK|A Chain A, Cell-Penetrant, Nanomolar O-Glcnacase Inhibitors Selective
Against Lysosomal Hexosaminidases
pdb|2XPK|B Chain B, Cell-Penetrant, Nanomolar O-Glcnacase Inhibitors Selective
Against Lysosomal Hexosaminidases
Length = 594
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 59/121 (48%), Gaps = 3/121 (2%)
Query: 39 LQAINEEILQRISHLETSSQTNVKTLFNITKQISGVEHLHSSMMELLESIETIENKVDYN 98
L+A +E+ ++S E +S + + +L +++ E+ ++E ++D
Sbjct: 471 LRAKMDELWNKLSSKEDASALIEELYGEFARMEEACNNLKANLPEV--ALEECSRQLDEL 528
Query: 99 LPTIQREISKLEFGVAQINSTLQVVNETRESDANYLKSTVSTLATLQEKVEANNIIMQAL 158
+ Q + + L+ VAQ+N + +E N L + +S+ A + EKV A + I +AL
Sbjct: 529 ITLAQGDKASLDMIVAQLNEDTEAYESAKEIAQNKLNTALSSFAVISEKV-AQSFIQEAL 587
Query: 159 S 159
S
Sbjct: 588 S 588
>pdb|1MDW|A Chain A, Crystal Structure Of Calcium-bound Protease Core Of
Calpain Ii Reveals The Basis For Intrinsic Inactivation
pdb|1MDW|B Chain B, Crystal Structure Of Calcium-bound Protease Core Of
Calpain Ii Reveals The Basis For Intrinsic Inactivation
Length = 328
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 44/211 (20%), Positives = 83/211 (39%), Gaps = 42/211 (19%)
Query: 42 INEEILQRISHLETSSQTNVKTLFNITKQISGVEHLHSSMMELLESIETIENKVDYNLPT 101
+NEEIL R+ L+ S Q N +F H + E +E + VD LPT
Sbjct: 98 LNEEILARVVPLDQSFQENYAGIF------------HFQFWQYGEWVEVV---VDDRLPT 142
Query: 102 IQREI-------------SKLEFGVAQINSTLQVVN--ETRESDANYLKSTVSTLATLQE 146
E+ + LE A+IN + ++ T E ++ +
Sbjct: 143 KDGELLFVHSAEGSEFWSALLEKAYAKINGCYEALSGGATTEGFEDFTGGIAEWYELRKP 202
Query: 147 KVEANNIIMQALSDANYLKSTVSTLATLQEKVEANNIIMQALRNGRSEGLSLSSQLDDSK 206
II +AL + L ++ + ++ + Q L G + ++ + +++ S
Sbjct: 203 PPNLFKIIQKALEKGSLLGCSID----ITSAADSEAVTYQKLVKGHAYSVTGAEEVESSG 258
Query: 207 NLSPETIMQQMNKIHDSYLQV--VGKLPNDC 235
+L Q++ +I + + QV GK ++C
Sbjct: 259 SL------QKLIRIRNPWGQVEWTGKWNDNC 283
>pdb|2YDQ|A Chain A, Cpoga D298n In Complex With Hoga-Derived O-Glcnac Peptide
pdb|2YDR|A Chain A, Cpoga D298n In Complex With P53-Derived O-Glcnac Peptide
pdb|2YDS|A Chain A, Cpoga D298n In Complex With Tab1-Derived O-Glcnac Peptide
Length = 590
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 59/121 (48%), Gaps = 3/121 (2%)
Query: 39 LQAINEEILQRISHLETSSQTNVKTLFNITKQISGVEHLHSSMMELLESIETIENKVDYN 98
L+A +E+ ++S E +S + + +L +++ E+ ++E ++D
Sbjct: 473 LRAKMDELWNKLSSKEDASALIEELYGEFARMEEACNNLKANLPEV--ALEECSRQLDEL 530
Query: 99 LPTIQREISKLEFGVAQINSTLQVVNETRESDANYLKSTVSTLATLQEKVEANNIIMQAL 158
+ Q + + L+ VAQ+N + +E N L + +S+ A + EKV A + I +AL
Sbjct: 531 ITLAQGDKASLDMIVAQLNEDTEAYESAKEIAQNKLNTALSSFAVISEKV-AQSFIQEAL 589
Query: 159 S 159
S
Sbjct: 590 S 590
>pdb|2J62|A Chain A, Structure Of A Bacterial O-glcnacase In Complex With
Glcnacstatin
pdb|2J62|B Chain B, Structure Of A Bacterial O-glcnacase In Complex With
Glcnacstatin
pdb|2WB5|A Chain A, Glcnacstatins Are Nanomolar Inhibitors Of Human
O-Glcnacase Inducing Cellular Hyper-O-Glcnacylation
pdb|2WB5|B Chain B, Glcnacstatins Are Nanomolar Inhibitors Of Human
O-Glcnacase Inducing Cellular Hyper-O-Glcnacylation
Length = 594
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 59/121 (48%), Gaps = 3/121 (2%)
Query: 39 LQAINEEILQRISHLETSSQTNVKTLFNITKQISGVEHLHSSMMELLESIETIENKVDYN 98
L+A +E+ ++S E +S + + +L +++ E+ ++E ++D
Sbjct: 471 LRAKMDELWNKLSSKEDASALIEELYGEFARMEEACNNLKANLPEV--ALEECSRQLDEL 528
Query: 99 LPTIQREISKLEFGVAQINSTLQVVNETRESDANYLKSTVSTLATLQEKVEANNIIMQAL 158
+ Q + + L+ VAQ+N + +E N L + +S+ A + EKV A + I +AL
Sbjct: 529 ITLAQGDKASLDMIVAQLNEDTEAYESAKEIAQNKLNTALSSFAVISEKV-AQSFIQEAL 587
Query: 159 S 159
S
Sbjct: 588 S 588
>pdb|2CBI|A Chain A, Structure Of The Clostridium Perfringens Nagj Family 84
Glycoside Hydrolase, A Homologue Of Human O-Glcnacase
pdb|2CBI|B Chain B, Structure Of The Clostridium Perfringens Nagj Family 84
Glycoside Hydrolase, A Homologue Of Human O-Glcnacase
pdb|2CBJ|A Chain A, Structure Of The Clostridium Perfringens Nagj Family 84
Glycoside Hydrolase, A Homologue Of Human O-Glcnacase In
Complex With Pugnac
pdb|2CBJ|B Chain B, Structure Of The Clostridium Perfringens Nagj Family 84
Glycoside Hydrolase, A Homologue Of Human O-Glcnacase In
Complex With Pugnac
pdb|2V5C|A Chain A, Family 84 Glycoside Hydrolase From Clostridium
Perfringens, 2.1 Angstrom Structure
pdb|2V5C|B Chain B, Family 84 Glycoside Hydrolase From Clostridium
Perfringens, 2.1 Angstrom Structure
pdb|2VUR|A Chain A, Chemical Dissection Of The Link Between Streptozotocin, O-
Glcnac And Pancreatic Cell Death
pdb|2VUR|B Chain B, Chemical Dissection Of The Link Between Streptozotocin, O-
Glcnac And Pancreatic Cell Death
pdb|2X0Y|A Chain A, Screening-Based Discovery Of Drug-Like O-Glcnacase
Inhibitor Scaffolds
pdb|2X0Y|B Chain B, Screening-Based Discovery Of Drug-Like O-Glcnacase
Inhibitor Scaffolds
Length = 594
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 59/121 (48%), Gaps = 3/121 (2%)
Query: 39 LQAINEEILQRISHLETSSQTNVKTLFNITKQISGVEHLHSSMMELLESIETIENKVDYN 98
L+A +E+ ++S E +S + + +L +++ E+ ++E ++D
Sbjct: 471 LRAKMDELWNKLSSKEDASALIEELYGEFARMEEACNNLKANLPEV--ALEECSRQLDEL 528
Query: 99 LPTIQREISKLEFGVAQINSTLQVVNETRESDANYLKSTVSTLATLQEKVEANNIIMQAL 158
+ Q + + L+ VAQ+N + +E N L + +S+ A + EKV A + I +AL
Sbjct: 529 ITLAQGDKASLDMIVAQLNEDTEAYESAKEIAQNKLNTALSSFAVISEKV-AQSFIQEAL 587
Query: 159 S 159
S
Sbjct: 588 S 588
>pdb|2V5D|A Chain A, Structure Of A Family 84 Glycoside Hydrolase And A Family
32 Carbohydrate-Binding Module In Tandem From
Clostridium Perfringens
Length = 737
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 59/121 (48%), Gaps = 3/121 (2%)
Query: 39 LQAINEEILQRISHLETSSQTNVKTLFNITKQISGVEHLHSSMMELLESIETIENKVDYN 98
L+A +E+ ++S E +S + + +L +++ E+ ++E ++D
Sbjct: 471 LRAKMDELWNKLSSKEDASALIEELYGEFARMEEACNNLKANLPEV--ALEECSRQLDEL 528
Query: 99 LPTIQREISKLEFGVAQINSTLQVVNETRESDANYLKSTVSTLATLQEKVEANNIIMQAL 158
+ Q + + L+ VAQ+N + +E N L + +S+ A + EKV A + I +AL
Sbjct: 529 ITLAQGDKASLDMIVAQLNEDTEAYESAKEIAQNKLNTALSSFAVISEKV-AQSFIQEAL 587
Query: 159 S 159
S
Sbjct: 588 S 588
>pdb|1DF0|A Chain A, Crystal Structure Of M-Calpain
Length = 700
Score = 32.3 bits (72), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 44/211 (20%), Positives = 83/211 (39%), Gaps = 42/211 (19%)
Query: 42 INEEILQRISHLETSSQTNVKTLFNITKQISGVEHLHSSMMELLESIETIENKVDYNLPT 101
+NEEIL R+ L+ S Q N +F H + E +E + VD LPT
Sbjct: 116 LNEEILARVVPLDQSFQENYAGIF------------HFQFWQYGEWVEVV---VDDRLPT 160
Query: 102 IQREI-------------SKLEFGVAQINSTLQVVN--ETRESDANYLKSTVSTLATLQE 146
E+ + LE A+IN + ++ T E ++ +
Sbjct: 161 KDGELLFVHSAEGSEFWSALLEKAYAKINGCYEALSGGATTEGFEDFTGGIAEWYELRKP 220
Query: 147 KVEANNIIMQALSDANYLKSTVSTLATLQEKVEANNIIMQALRNGRSEGLSLSSQLDDSK 206
II +AL + L ++ + ++ + Q L G + ++ + +++ S
Sbjct: 221 PPNLFKIIQKALEKGSLLGCSID----ITSAADSEAVTYQKLVKGHAYSVTGAEEVESSG 276
Query: 207 NLSPETIMQQMNKIHDSYLQV--VGKLPNDC 235
+L Q++ +I + + QV GK ++C
Sbjct: 277 SL------QKLIRIRNPWGQVEWTGKWNDNC 301
>pdb|1U5I|A Chain A, Crystal Structure Analysis Of Rat M-Calpain Mutant Lys10
Thr
Length = 700
Score = 32.3 bits (72), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 44/211 (20%), Positives = 83/211 (39%), Gaps = 42/211 (19%)
Query: 42 INEEILQRISHLETSSQTNVKTLFNITKQISGVEHLHSSMMELLESIETIENKVDYNLPT 101
+NEEIL R+ L+ S Q N +F H + E +E + VD LPT
Sbjct: 116 LNEEILARVVPLDQSFQENYAGIF------------HFQFWQYGEWVEVV---VDDRLPT 160
Query: 102 IQREI-------------SKLEFGVAQINSTLQVVN--ETRESDANYLKSTVSTLATLQE 146
E+ + LE A+IN + ++ T E ++ +
Sbjct: 161 KDGELLFVHSAEGSEFWSALLEKAYAKINGCYEALSGGATTEGFEDFTGGIAEWYELRKP 220
Query: 147 KVEANNIIMQALSDANYLKSTVSTLATLQEKVEANNIIMQALRNGRSEGLSLSSQLDDSK 206
II +AL + L ++ + ++ + Q L G + ++ + +++ S
Sbjct: 221 PPNLFKIIQKALEKGSLLGCSID----ITSAADSEAVTYQKLVKGHAYSVTGAEEVESSG 276
Query: 207 NLSPETIMQQMNKIHDSYLQV--VGKLPNDC 235
+L Q++ +I + + QV GK ++C
Sbjct: 277 SL------QKLIRIRNPWGQVEWTGKWNDNC 301
>pdb|3DF0|A Chain A, Calcium-Dependent Complex Between M-Calpain And
Calpastatin
pdb|3BOW|A Chain A, Structure Of M-Calpain In Complex With Calpastatin
Length = 714
Score = 32.3 bits (72), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 44/211 (20%), Positives = 83/211 (39%), Gaps = 42/211 (19%)
Query: 42 INEEILQRISHLETSSQTNVKTLFNITKQISGVEHLHSSMMELLESIETIENKVDYNLPT 101
+NEEIL R+ L+ S Q N +F H + E +E + VD LPT
Sbjct: 116 LNEEILARVVPLDQSFQENYAGIF------------HFQFWQYGEWVEVV---VDDRLPT 160
Query: 102 IQREI-------------SKLEFGVAQINSTLQVVN--ETRESDANYLKSTVSTLATLQE 146
E+ + LE A+IN + ++ T E ++ +
Sbjct: 161 KDGELLFVHSAEGSEFWSALLEKAYAKINGCYEALSGGATTEGFEDFTGGIAEWYELRKP 220
Query: 147 KVEANNIIMQALSDANYLKSTVSTLATLQEKVEANNIIMQALRNGRSEGLSLSSQLDDSK 206
II +AL + L ++ + ++ + Q L G + ++ + +++ S
Sbjct: 221 PPNLFKIIQKALEKGSLLGCSID----ITSAADSEAVTYQKLVKGHAYSVTGAEEVESSG 276
Query: 207 NLSPETIMQQMNKIHDSYLQV--VGKLPNDC 235
+L Q++ +I + + QV GK ++C
Sbjct: 277 SL------QKLIRIRNPWGQVEWTGKWNDNC 301
>pdb|1WRU|A Chain A, Structure Of Central Hub Elucidated By X-Ray Analysis Of
Gene Product 44; Baseplate Component Of Bacteriophage Mu
Length = 379
Score = 32.0 bits (71), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Query: 333 GYRLNLSGYHGNASDAMTYQNNMKFSTIDRDNDLSNTHCASNYEGGWWFSHCLHA---NL 389
G ++ +GY + MT ++MK + RD CA+ Y GG W + L +L
Sbjct: 59 GGQIVCTGYIDSRRRQMT-ADSMKITVAGRDKTADLIDCAAVYSGGQWKNRTLEQIARDL 117
Query: 390 NGKFNLGLTWFHSEK 404
+ + + W S+K
Sbjct: 118 CAPYGVTVRWELSDK 132
>pdb|2BF1|A Chain A, Structure Of An Unliganded And Fully-Glycosylated Siv
Gp120 Envelope Glycoprotein
pdb|3FUS|A Chain A, Improved Structure Of The Unliganded Simian
Immunodeficiency Virus Gp120 Core
Length = 316
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 37/80 (46%), Gaps = 6/80 (7%)
Query: 195 GLSLSSQLDDSKNLSPETIMQQMNKIHDSYLQVVGKLPNDC--EGHSGLQLISLGRSVLC 252
L+++ D +N E ++ + ++ ++ ++ KL C GH +I C
Sbjct: 5 ALNVTESFDAWENTVTEQAIEDVWQLFETSIKPCVKLSPLCIGAGHCNTSIIQES----C 60
Query: 253 DEHHWMTIQRRYNGMQEFNL 272
D+H+W TI+ RY + L
Sbjct: 61 DKHYWDTIRFRYCAPPGYAL 80
>pdb|2KMC|A Chain A, Solution Structure Of The N-Terminal Domain Of Kindlin-1
Length = 102
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
Query: 39 LQAINEEILQRISHLETSSQTNVKTLFNITKQISGVEHLHSSMMELLESIETIENKVDYN 98
L + + E++ R+ H QT IT ++SG H+ M++L+E + ++ DY
Sbjct: 13 LTSASWELVVRVDHANGEQQTE------ITLRVSGDLHIGGVMLKLVEQMNIAQDWSDYA 66
Query: 99 L 99
L
Sbjct: 67 L 67
>pdb|3DEV|A Chain A, Crystal Structure Of Sh1221 Protein From Staphylococcus
Haemolyticus, Northeast Structural Genomics Consortium
Target Shr87
pdb|3DEV|B Chain B, Crystal Structure Of Sh1221 Protein From Staphylococcus
Haemolyticus, Northeast Structural Genomics Consortium
Target Shr87
Length = 320
Score = 28.1 bits (61), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 5 PILPDPRYRNGKLFLKTKHHLEKEQHV-INHKMKTLQAINEEILQRISHL 53
P + D RY NG+ +K HH +Q+ +N + +E I ISH
Sbjct: 88 PRIDDQRYLNGQSLIKIDHHPATDQYGDVNFVNTEASSTSEIIFDFISHF 137
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.128 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,248,486
Number of Sequences: 62578
Number of extensions: 479710
Number of successful extensions: 1545
Number of sequences better than 100.0: 78
Number of HSP's better than 100.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 1393
Number of HSP's gapped (non-prelim): 80
length of query: 423
length of database: 14,973,337
effective HSP length: 101
effective length of query: 322
effective length of database: 8,652,959
effective search space: 2786252798
effective search space used: 2786252798
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)