Query psy14534
Match_columns 423
No_of_seqs 218 out of 1301
Neff 5.3
Searched_HMMs 46136
Date Fri Aug 16 22:19:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14534.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14534hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00186 FBG Fibrinogen-rela 100.0 7E-71 1.5E-75 523.1 16.1 189 231-420 1-212 (212)
2 cd00087 FReD Fibrinogen-relate 100.0 1.6E-70 3.4E-75 521.8 16.4 189 231-420 2-215 (215)
3 KOG2579|consensus 100.0 1.8E-70 3.8E-75 552.3 14.5 192 230-422 120-336 (338)
4 PF00147 Fibrinogen_C: Fibrino 100.0 3.8E-66 8.2E-71 497.9 9.2 188 232-420 2-235 (235)
5 TIGR02168 SMC_prok_B chromosom 96.4 0.26 5.7E-06 56.5 20.2 21 17-37 674-694 (1179)
6 KOG0971|consensus 96.3 0.31 6.8E-06 55.4 19.2 109 37-149 328-441 (1243)
7 PF05667 DUF812: Protein of un 96.2 0.33 7.3E-06 53.5 18.5 67 113-179 442-522 (594)
8 COG4942 Membrane-bound metallo 96.1 0.55 1.2E-05 49.6 19.0 60 18-77 43-102 (420)
9 PHA02562 46 endonuclease subun 96.1 0.61 1.3E-05 50.0 19.9 27 46-72 225-251 (562)
10 PRK03918 chromosome segregatio 96.0 0.46 1E-05 53.8 19.2 30 46-75 554-583 (880)
11 PRK02224 chromosome segregatio 95.9 0.6 1.3E-05 53.1 19.4 10 187-196 448-457 (880)
12 PF10168 Nup88: Nuclear pore c 95.9 0.16 3.5E-06 57.1 14.5 46 16-61 546-592 (717)
13 PHA02562 46 endonuclease subun 95.7 0.72 1.6E-05 49.4 18.5 17 98-114 307-323 (562)
14 PF15070 GOLGA2L5: Putative go 95.7 0.82 1.8E-05 50.7 18.9 130 19-149 86-233 (617)
15 COG1196 Smc Chromosome segrega 95.6 0.83 1.8E-05 54.0 20.0 35 107-141 379-413 (1163)
16 KOG0161|consensus 95.6 0.88 1.9E-05 56.1 20.1 45 69-113 1006-1050(1930)
17 COG1196 Smc Chromosome segrega 95.6 0.98 2.1E-05 53.4 20.2 17 268-284 1009-1025(1163)
18 TIGR00606 rad50 rad50. This fa 95.5 0.55 1.2E-05 56.1 17.8 71 67-137 787-862 (1311)
19 PRK09039 hypothetical protein; 95.3 0.83 1.8E-05 47.1 16.2 120 15-148 41-167 (343)
20 PF07888 CALCOCO1: Calcium bin 95.2 2.2 4.8E-05 46.6 19.7 56 16-71 139-194 (546)
21 PF00261 Tropomyosin: Tropomyo 95.0 2.8 6E-05 40.8 18.2 130 18-147 27-170 (237)
22 PRK03918 chromosome segregatio 95.0 1.4 3.1E-05 49.9 18.5 10 354-363 819-828 (880)
23 PF08317 Spc7: Spc7 kinetochor 94.9 2.3 5.1E-05 43.3 18.0 107 42-148 150-260 (325)
24 PF08317 Spc7: Spc7 kinetochor 94.8 0.93 2E-05 46.2 15.1 29 46-74 147-175 (325)
25 smart00787 Spc7 Spc7 kinetocho 94.8 1.9 4.1E-05 44.0 17.2 32 46-77 142-173 (312)
26 PRK04778 septation ring format 94.7 0.67 1.5E-05 50.7 14.4 52 60-111 381-432 (569)
27 KOG0161|consensus 94.6 2.6 5.7E-05 52.2 20.3 59 95-153 976-1034(1930)
28 TIGR00606 rad50 rad50. This fa 94.6 2.7 5.9E-05 50.4 20.2 72 19-90 828-899 (1311)
29 COG1579 Zn-ribbon protein, pos 94.5 2.6 5.6E-05 41.6 16.4 44 99-142 91-134 (239)
30 PRK02224 chromosome segregatio 94.4 3.6 7.8E-05 46.8 20.1 7 355-361 819-825 (880)
31 KOG1029|consensus 94.3 2 4.4E-05 48.5 16.8 38 97-134 486-523 (1118)
32 KOG0250|consensus 94.2 2.2 4.7E-05 49.7 17.4 50 13-62 654-703 (1074)
33 PF10168 Nup88: Nuclear pore c 94.1 0.47 1E-05 53.4 12.0 21 157-177 694-714 (717)
34 COG4942 Membrane-bound metallo 94.1 3.2 7E-05 44.0 17.3 43 18-60 64-106 (420)
35 PRK01156 chromosome segregatio 94.1 5 0.00011 45.9 20.3 7 375-381 802-808 (895)
36 PF12718 Tropomyosin_1: Tropom 94.0 2.5 5.3E-05 38.4 14.4 88 42-133 22-109 (143)
37 PF07888 CALCOCO1: Calcium bin 93.9 6.1 0.00013 43.3 19.4 23 128-150 279-301 (546)
38 TIGR03007 pepcterm_ChnLen poly 93.8 11 0.00023 40.2 21.5 101 15-115 163-293 (498)
39 PRK04863 mukB cell division pr 93.8 5.8 0.00013 48.4 20.8 43 20-62 293-335 (1486)
40 KOG0250|consensus 93.8 2.8 6.1E-05 48.9 17.3 69 103-171 357-427 (1074)
41 KOG0964|consensus 93.8 4.4 9.6E-05 46.9 18.4 130 20-149 272-421 (1200)
42 PF00261 Tropomyosin: Tropomyo 93.5 3.4 7.3E-05 40.2 15.4 30 44-73 39-68 (237)
43 PF05667 DUF812: Protein of un 93.4 5.8 0.00013 44.0 18.6 31 18-48 333-363 (594)
44 COG1579 Zn-ribbon protein, pos 93.4 3.7 8E-05 40.5 15.3 9 246-254 218-226 (239)
45 PRK04778 septation ring format 93.4 4.3 9.4E-05 44.4 17.5 103 46-148 254-371 (569)
46 smart00787 Spc7 Spc7 kinetocho 93.2 2.8 6E-05 42.9 14.6 117 37-153 140-260 (312)
47 PF10473 CENP-F_leu_zip: Leuci 93.1 5.3 0.00012 36.4 14.8 48 100-147 55-102 (140)
48 KOG0995|consensus 92.5 8.8 0.00019 42.2 17.9 51 73-127 274-324 (581)
49 COG3883 Uncharacterized protei 92.5 4.6 0.0001 40.4 14.7 65 50-117 33-100 (265)
50 KOG4643|consensus 92.3 10 0.00022 44.3 18.5 124 23-146 411-558 (1195)
51 TIGR03017 EpsF chain length de 92.2 13 0.00028 38.8 18.5 39 99-137 256-294 (444)
52 PF10498 IFT57: Intra-flagella 92.1 2.5 5.4E-05 44.0 12.9 69 73-141 242-310 (359)
53 PF09730 BicD: Microtubule-ass 91.9 3.9 8.4E-05 46.2 14.9 120 45-167 31-168 (717)
54 PF09726 Macoilin: Transmembra 91.9 6.3 0.00014 44.5 16.6 28 121-148 548-575 (697)
55 PF12718 Tropomyosin_1: Tropom 91.5 3.6 7.9E-05 37.3 11.8 106 18-141 19-124 (143)
56 TIGR00634 recN DNA repair prot 91.3 10 0.00022 41.4 17.2 33 95-127 264-296 (563)
57 KOG1937|consensus 91.2 10 0.00023 40.6 16.2 73 104-179 345-420 (521)
58 PF00038 Filament: Intermediat 91.1 17 0.00038 36.1 20.5 47 103-149 194-240 (312)
59 PF09726 Macoilin: Transmembra 91.1 15 0.00034 41.5 18.6 49 100-148 555-603 (697)
60 PF04899 MbeD_MobD: MbeD/MobD 90.6 0.89 1.9E-05 36.7 6.2 62 83-144 7-68 (70)
61 KOG0996|consensus 90.6 8.6 0.00019 45.4 16.1 81 273-362 1136-1225(1293)
62 TIGR03185 DNA_S_dndD DNA sulfu 90.6 17 0.00037 40.4 18.3 12 279-290 582-593 (650)
63 PF04912 Dynamitin: Dynamitin 90.6 6.6 0.00014 40.9 14.3 101 43-148 263-366 (388)
64 KOG0964|consensus 90.6 12 0.00027 43.5 17.0 107 42-150 192-318 (1200)
65 PF10498 IFT57: Intra-flagella 90.4 2.5 5.4E-05 44.0 10.9 47 98-144 281-327 (359)
66 PF04156 IncA: IncA protein; 90.4 3.8 8.3E-05 38.0 11.2 28 83-110 123-150 (191)
67 PF04100 Vps53_N: Vps53-like, 90.3 9.4 0.0002 40.0 15.2 83 42-124 26-112 (383)
68 KOG0994|consensus 90.3 13 0.00029 44.0 17.1 109 37-149 1511-1629(1758)
69 KOG2180|consensus 90.2 6.6 0.00014 44.2 14.3 88 37-124 36-127 (793)
70 PF15397 DUF4618: Domain of un 90.1 9.8 0.00021 38.0 14.2 45 16-60 63-107 (258)
71 PF12128 DUF3584: Protein of u 90.1 24 0.00052 42.2 20.0 13 267-279 934-946 (1201)
72 PF09755 DUF2046: Uncharacteri 90.1 25 0.00053 36.1 19.7 170 18-193 25-206 (310)
73 KOG0976|consensus 89.9 28 0.0006 40.1 18.7 51 11-61 247-304 (1265)
74 PF04582 Reo_sigmaC: Reovirus 89.9 0.61 1.3E-05 47.8 5.8 101 44-148 31-135 (326)
75 KOG0579|consensus 89.9 27 0.00058 39.7 18.4 152 11-177 784-949 (1187)
76 PF10146 zf-C4H2: Zinc finger- 89.8 2.3 5E-05 41.7 9.5 74 64-141 3-76 (230)
77 PF04582 Reo_sigmaC: Reovirus 89.8 0.38 8.3E-06 49.3 4.2 117 18-148 33-149 (326)
78 KOG0977|consensus 89.6 37 0.0008 37.4 19.5 29 36-64 44-72 (546)
79 TIGR03185 DNA_S_dndD DNA sulfu 89.6 37 0.0008 37.8 19.9 49 97-145 391-441 (650)
80 PRK04863 mukB cell division pr 89.5 32 0.00069 42.3 20.5 48 25-72 291-338 (1486)
81 PF06008 Laminin_I: Laminin Do 89.4 18 0.00038 35.6 15.5 17 21-37 18-34 (264)
82 PRK10869 recombination and rep 89.3 11 0.00024 41.3 15.3 36 25-60 162-197 (553)
83 KOG0999|consensus 89.2 22 0.00047 39.3 16.8 82 46-134 105-186 (772)
84 KOG4674|consensus 89.0 30 0.00064 43.1 19.5 131 19-150 100-242 (1822)
85 PF00038 Filament: Intermediat 88.9 26 0.00057 34.8 18.1 36 35-70 5-40 (312)
86 KOG0612|consensus 88.9 21 0.00046 42.5 17.5 7 19-25 471-477 (1317)
87 KOG0978|consensus 88.5 50 0.0011 37.5 21.7 93 103-195 523-624 (698)
88 TIGR00634 recN DNA repair prot 88.2 40 0.00088 36.8 18.7 41 21-61 162-202 (563)
89 PRK09039 hypothetical protein; 88.0 24 0.00053 36.4 16.0 48 103-150 115-162 (343)
90 KOG2196|consensus 87.8 14 0.0003 36.7 13.1 16 50-65 122-137 (254)
91 KOG0018|consensus 87.5 69 0.0015 38.0 21.2 71 22-95 685-755 (1141)
92 TIGR02338 gimC_beta prefoldin, 87.4 4.9 0.00011 34.5 9.0 94 36-138 12-108 (110)
93 PRK11820 hypothetical protein; 87.2 6 0.00013 40.0 10.8 60 101-164 214-287 (288)
94 PF14662 CCDC155: Coiled-coil 87.2 18 0.00038 34.8 13.2 114 18-149 6-119 (193)
95 PF15619 Lebercilin: Ciliary p 87.0 29 0.00063 33.1 16.9 56 79-138 96-152 (194)
96 PF01410 COLFI: Fibrillar coll 86.6 0.3 6.5E-06 47.0 1.1 28 237-264 25-60 (214)
97 KOG0980|consensus 85.9 42 0.00091 38.9 17.2 52 44-95 427-482 (980)
98 PF13851 GAS: Growth-arrest sp 85.8 28 0.00061 33.3 14.1 77 62-152 69-145 (201)
99 PF09730 BicD: Microtubule-ass 85.6 24 0.00052 40.1 15.4 45 18-62 270-321 (717)
100 KOG0995|consensus 85.5 41 0.00089 37.2 16.5 22 20-41 235-256 (581)
101 KOG3850|consensus 85.5 9.9 0.00021 40.0 11.4 68 74-141 262-340 (455)
102 PF15066 CAGE1: Cancer-associa 85.4 24 0.00053 38.1 14.4 91 51-141 386-501 (527)
103 PF04156 IncA: IncA protein; 85.4 8.9 0.00019 35.5 10.3 33 28-60 82-114 (191)
104 COG1561 Uncharacterized stress 85.3 14 0.00029 37.6 12.0 61 100-164 215-289 (290)
105 COG0419 SbcC ATPase involved i 85.2 71 0.0015 37.0 19.5 9 279-287 849-857 (908)
106 PF05701 WEMBL: Weak chloropla 85.1 30 0.00065 37.7 15.5 33 116-148 314-346 (522)
107 PF09755 DUF2046: Uncharacteri 84.7 45 0.00097 34.3 15.5 64 73-136 179-247 (310)
108 PF10186 Atg14: UV radiation r 84.5 31 0.00068 33.5 14.2 40 102-141 61-100 (302)
109 COG4372 Uncharacterized protei 84.2 62 0.0013 34.4 18.3 91 75-166 182-273 (499)
110 PF12128 DUF3584: Protein of u 84.2 41 0.0009 40.3 17.4 22 20-41 313-334 (1201)
111 PF13851 GAS: Growth-arrest sp 84.1 40 0.00087 32.2 16.7 40 109-148 84-123 (201)
112 PF10174 Cast: RIM-binding pro 83.9 65 0.0014 37.1 17.9 46 102-147 376-421 (775)
113 cd00632 Prefoldin_beta Prefold 83.9 9.2 0.0002 32.5 8.9 93 36-137 8-103 (105)
114 PF04912 Dynamitin: Dynamitin 83.8 12 0.00026 39.0 11.5 50 66-119 316-365 (388)
115 KOG0612|consensus 83.6 52 0.0011 39.4 17.2 21 20-40 465-485 (1317)
116 TIGR01005 eps_transp_fam exopo 83.6 72 0.0016 36.0 18.3 24 16-39 197-220 (754)
117 KOG0996|consensus 83.5 68 0.0015 38.4 17.9 38 251-296 639-678 (1293)
118 PF06008 Laminin_I: Laminin Do 83.3 48 0.001 32.5 19.7 32 45-76 84-115 (264)
119 PF03148 Tektin: Tektin family 83.2 63 0.0014 33.8 20.1 69 82-150 236-304 (384)
120 KOG4674|consensus 83.1 70 0.0015 40.0 18.6 22 157-178 222-243 (1822)
121 PF04740 LXG: LXG domain of WX 82.8 41 0.00089 31.3 14.3 98 44-144 27-132 (204)
122 KOG0933|consensus 82.3 46 0.00099 39.2 15.8 49 20-68 755-807 (1174)
123 KOG0994|consensus 82.0 1.2E+02 0.0026 36.6 18.9 12 20-31 1511-1522(1758)
124 PF10174 Cast: RIM-binding pro 81.6 77 0.0017 36.5 17.5 34 43-76 380-413 (775)
125 KOG0976|consensus 81.1 1.2E+02 0.0025 35.4 18.2 19 17-35 96-114 (1265)
126 PF12325 TMF_TATA_bd: TATA ele 81.0 9.1 0.0002 34.0 7.9 67 44-114 19-85 (120)
127 COG0497 RecN ATPase involved i 80.9 72 0.0016 35.4 16.3 25 15-39 166-190 (557)
128 PF13166 AAA_13: AAA domain 80.8 98 0.0021 34.4 18.9 10 101-110 388-397 (712)
129 PF10267 Tmemb_cc2: Predicted 80.8 10 0.00023 40.0 9.6 68 73-140 213-291 (395)
130 PF06160 EzrA: Septation ring 80.8 95 0.0021 34.2 19.1 22 74-95 315-336 (560)
131 TIGR01000 bacteriocin_acc bact 80.7 58 0.0013 34.6 15.4 17 45-61 176-192 (457)
132 PF07926 TPR_MLP1_2: TPR/MLP1/ 80.3 41 0.0009 29.8 13.3 59 20-85 3-61 (132)
133 PF08614 ATG16: Autophagy prot 80.0 8.5 0.00018 36.3 8.0 19 44-62 27-45 (194)
134 PF03234 CDC37_N: Cdc37 N term 80.0 10 0.00022 35.8 8.4 107 21-134 40-161 (177)
135 COG5185 HEC1 Protein involved 79.9 66 0.0014 35.0 15.0 64 99-165 332-395 (622)
136 PF07926 TPR_MLP1_2: TPR/MLP1/ 79.8 43 0.00093 29.7 13.6 26 36-61 5-30 (132)
137 PF05701 WEMBL: Weak chloropla 79.8 99 0.0021 33.8 17.6 45 102-146 286-330 (522)
138 PF15070 GOLGA2L5: Putative go 79.7 1.1E+02 0.0024 34.3 18.2 74 22-95 24-103 (617)
139 KOG0933|consensus 79.6 25 0.00053 41.3 12.5 50 99-148 408-457 (1174)
140 PF15619 Lebercilin: Ciliary p 79.5 59 0.0013 31.1 19.3 10 15-24 4-13 (194)
141 TIGR01005 eps_transp_fam exopo 79.5 1.2E+02 0.0025 34.4 21.7 21 99-119 290-310 (754)
142 COG1340 Uncharacterized archae 79.5 78 0.0017 32.4 16.7 140 18-172 136-275 (294)
143 KOG4593|consensus 79.4 1.2E+02 0.0026 34.5 18.4 54 88-141 156-209 (716)
144 PF04849 HAP1_N: HAP1 N-termin 79.3 80 0.0017 32.5 17.9 31 118-148 206-236 (306)
145 PF04100 Vps53_N: Vps53-like, 79.2 30 0.00064 36.3 12.4 107 81-188 10-128 (383)
146 PRK10884 SH3 domain-containing 79.1 12 0.00027 36.0 8.9 22 98-119 94-115 (206)
147 PF11559 ADIP: Afadin- and alp 79.1 19 0.00041 32.4 9.6 12 103-114 132-143 (151)
148 PF06160 EzrA: Septation ring 79.1 1.1E+02 0.0023 33.8 17.6 51 99-149 374-424 (560)
149 PF04111 APG6: Autophagy prote 79.1 13 0.00027 38.1 9.4 8 242-249 196-203 (314)
150 PRK10884 SH3 domain-containing 78.8 24 0.00053 34.0 10.8 40 98-137 87-126 (206)
151 KOG0018|consensus 78.6 19 0.0004 42.4 11.3 117 21-139 221-338 (1141)
152 TIGR02680 conserved hypothetic 78.3 1.7E+02 0.0037 35.9 19.8 56 85-141 864-919 (1353)
153 KOG4403|consensus 78.3 50 0.0011 35.5 13.5 96 44-146 262-375 (575)
154 KOG1899|consensus 78.2 31 0.00067 38.7 12.3 77 15-92 106-187 (861)
155 PF06005 DUF904: Protein of un 77.7 14 0.00031 29.9 7.5 34 98-131 19-52 (72)
156 KOG0978|consensus 77.5 60 0.0013 36.9 14.7 42 30-71 506-547 (698)
157 KOG1937|consensus 77.4 1.1E+02 0.0024 33.1 17.0 56 84-141 371-426 (521)
158 KOG0804|consensus 77.4 62 0.0013 34.9 14.0 8 157-164 440-447 (493)
159 PRK10869 recombination and rep 77.4 55 0.0012 35.9 14.3 25 17-41 168-192 (553)
160 PF14662 CCDC155: Coiled-coil 77.1 72 0.0016 30.7 19.4 23 53-75 13-35 (193)
161 PF05791 Bacillus_HBL: Bacillu 77.0 23 0.0005 33.3 9.9 76 73-150 67-142 (184)
162 PF15254 CCDC14: Coiled-coil d 76.8 1.2E+02 0.0025 35.1 16.5 149 5-153 329-522 (861)
163 KOG1029|consensus 76.8 1.5E+02 0.0033 34.3 17.8 59 83-141 490-554 (1118)
164 smart00502 BBC B-Box C-termina 76.3 44 0.00095 27.9 11.2 46 36-81 9-55 (127)
165 KOG4809|consensus 76.1 67 0.0014 35.5 14.0 29 44-72 376-404 (654)
166 PF05557 MAD: Mitotic checkpoi 75.9 0.86 1.9E-05 51.2 0.0 44 103-146 177-220 (722)
167 PF10481 CENP-F_N: Cenp-F N-te 75.9 43 0.00094 33.9 11.7 67 29-95 20-86 (307)
168 PF10779 XhlA: Haemolysin XhlA 75.5 4.3 9.2E-05 32.4 3.9 44 31-74 3-46 (71)
169 KOG0962|consensus 75.4 2E+02 0.0044 35.0 19.1 12 353-364 1213-1224(1294)
170 PF13870 DUF4201: Domain of un 75.3 66 0.0014 29.7 12.3 49 98-146 57-105 (177)
171 COG0419 SbcC ATPase involved i 75.0 1.7E+02 0.0037 34.0 20.3 14 79-92 315-328 (908)
172 PF10267 Tmemb_cc2: Predicted 74.6 23 0.00051 37.5 10.1 62 77-141 249-310 (395)
173 PRK11519 tyrosine kinase; Prov 74.6 1.6E+02 0.0034 33.4 18.2 25 37-61 270-294 (719)
174 KOG0963|consensus 74.5 1.5E+02 0.0033 33.2 18.2 45 100-144 252-297 (629)
175 PTZ00464 SNF-7-like protein; P 74.5 80 0.0017 30.6 13.0 25 16-40 21-45 (211)
176 KOG0977|consensus 74.3 1.5E+02 0.0032 32.9 16.4 49 29-77 44-92 (546)
177 PF04012 PspA_IM30: PspA/IM30 74.1 80 0.0017 29.9 13.0 54 77-130 10-63 (221)
178 KOG4673|consensus 73.4 1.8E+02 0.0038 33.4 18.1 54 18-71 407-476 (961)
179 TIGR00255 conserved hypothetic 73.1 99 0.0021 31.4 13.9 60 101-164 217-290 (291)
180 PF15294 Leu_zip: Leucine zipp 73.1 96 0.0021 31.5 13.5 53 83-135 194-246 (278)
181 PF11932 DUF3450: Protein of u 72.8 24 0.00053 34.4 9.3 38 257-294 182-219 (251)
182 PRK10929 putative mechanosensi 72.8 57 0.0012 39.0 13.6 99 42-149 209-310 (1109)
183 KOG0804|consensus 72.5 25 0.00054 37.8 9.6 51 98-148 390-444 (493)
184 PF08614 ATG16: Autophagy prot 72.5 21 0.00046 33.6 8.5 44 105-148 110-153 (194)
185 KOG0979|consensus 72.5 1.6E+02 0.0034 34.9 16.5 38 102-139 260-297 (1072)
186 PF15294 Leu_zip: Leucine zipp 72.3 45 0.00098 33.8 11.0 21 36-56 134-154 (278)
187 PF11559 ADIP: Afadin- and alp 72.3 73 0.0016 28.5 13.8 76 102-177 57-133 (151)
188 PF07889 DUF1664: Protein of u 72.2 21 0.00046 32.0 7.9 16 56-71 37-52 (126)
189 PRK09841 cryptic autophosphory 72.2 45 0.00097 37.7 12.3 26 77-102 316-341 (726)
190 PF09304 Cortex-I_coil: Cortex 72.1 38 0.00081 29.7 9.0 61 20-90 16-76 (107)
191 PF10805 DUF2730: Protein of u 72.1 11 0.00024 32.4 5.9 28 33-60 34-61 (106)
192 TIGR03017 EpsF chain length de 71.5 1.3E+02 0.0029 31.3 19.1 39 76-114 258-299 (444)
193 KOG1899|consensus 71.5 90 0.002 35.2 13.7 106 20-125 139-245 (861)
194 TIGR01010 BexC_CtrB_KpsE polys 71.2 1.3E+02 0.0027 30.8 16.1 45 97-141 214-258 (362)
195 PRK10929 putative mechanosensi 71.1 1.6E+02 0.0034 35.5 16.7 17 377-393 567-584 (1109)
196 COG3074 Uncharacterized protei 70.6 27 0.00059 28.4 7.3 39 82-121 3-42 (79)
197 PF05557 MAD: Mitotic checkpoi 70.6 5.6 0.00012 44.8 4.8 67 48-114 399-471 (722)
198 PF08647 BRE1: BRE1 E3 ubiquit 70.6 22 0.00048 30.0 7.3 84 19-102 2-92 (96)
199 PF10146 zf-C4H2: Zinc finger- 70.0 35 0.00077 33.5 9.6 33 29-61 3-35 (230)
200 COG0497 RecN ATPase involved i 69.9 1.9E+02 0.004 32.2 16.4 52 31-82 168-228 (557)
201 PHA03332 membrane glycoprotein 69.8 76 0.0017 37.7 13.2 53 60-115 896-948 (1328)
202 PRK09841 cryptic autophosphory 69.7 2E+02 0.0044 32.6 18.6 132 25-178 258-389 (726)
203 PHA03332 membrane glycoprotein 69.5 2.5E+02 0.0055 33.6 18.8 71 43-120 900-971 (1328)
204 KOG0946|consensus 69.4 1.3E+02 0.0029 34.8 14.8 34 102-135 742-775 (970)
205 KOG3478|consensus 69.0 50 0.0011 29.2 9.1 92 25-117 3-96 (120)
206 KOG0243|consensus 68.4 2.2E+02 0.0047 34.0 16.7 23 128-150 535-557 (1041)
207 smart00503 SynN Syntaxin N-ter 68.4 31 0.00067 28.9 7.9 20 62-81 15-34 (117)
208 KOG2129|consensus 68.4 62 0.0013 34.7 11.3 13 49-61 209-221 (552)
209 KOG0972|consensus 67.9 63 0.0014 33.2 10.9 62 73-141 249-310 (384)
210 PRK06800 fliH flagellar assemb 67.8 71 0.0015 30.8 10.6 125 6-131 36-172 (228)
211 smart00038 COLFI Fibrillar col 67.7 3.5 7.6E-05 40.3 2.1 27 237-263 42-76 (232)
212 TIGR02977 phageshock_pspA phag 67.6 78 0.0017 30.4 11.3 57 77-133 11-67 (219)
213 COG4026 Uncharacterized protei 67.4 29 0.00063 34.3 8.2 35 31-65 139-173 (290)
214 PRK11281 hypothetical protein; 67.3 1.4E+02 0.0031 35.8 15.4 6 388-393 600-605 (1113)
215 KOG0979|consensus 67.2 1.7E+02 0.0036 34.7 15.3 44 18-61 227-275 (1072)
216 PF07989 Microtub_assoc: Micro 67.2 11 0.00025 30.6 4.6 25 50-74 2-26 (75)
217 PF04849 HAP1_N: HAP1 N-termin 67.2 1.6E+02 0.0034 30.4 18.9 74 44-127 163-236 (306)
218 KOG4677|consensus 67.0 1E+02 0.0022 33.4 12.6 62 90-153 387-450 (554)
219 TIGR02231 conserved hypothetic 67.0 9.4 0.0002 41.2 5.4 35 20-54 71-105 (525)
220 KOG0239|consensus 66.5 2.1E+02 0.0045 32.5 15.9 22 315-336 476-497 (670)
221 PF05010 TACC: Transforming ac 66.5 1.3E+02 0.0028 29.2 18.0 18 73-90 84-101 (207)
222 PF07889 DUF1664: Protein of u 66.4 38 0.00083 30.4 8.2 49 44-95 71-119 (126)
223 PF13514 AAA_27: AAA domain 66.3 2.8E+02 0.0062 33.0 18.5 19 346-364 1050-1068(1111)
224 KOG4438|consensus 65.3 2E+02 0.0044 30.9 16.9 34 19-52 137-170 (446)
225 KOG2991|consensus 65.1 1.6E+02 0.0035 29.8 15.7 100 15-114 103-208 (330)
226 PF05278 PEARLI-4: Arabidopsis 65.0 87 0.0019 31.6 11.3 76 73-148 167-244 (269)
227 KOG0962|consensus 64.9 3.3E+02 0.0072 33.3 18.4 30 124-153 331-360 (1294)
228 KOG4593|consensus 64.9 2.6E+02 0.0055 32.0 18.0 36 157-192 280-319 (716)
229 TIGR03794 NHPM_micro_HlyD NHPM 64.7 1.8E+02 0.004 30.3 15.3 22 19-40 95-116 (421)
230 PRK11519 tyrosine kinase; Prov 64.5 79 0.0017 35.8 12.2 23 17-39 271-293 (719)
231 KOG0288|consensus 64.3 72 0.0016 34.1 10.9 50 19-68 19-68 (459)
232 PF04111 APG6: Autophagy prote 64.3 20 0.00044 36.5 6.9 65 103-167 70-135 (314)
233 TIGR03007 pepcterm_ChnLen poly 63.9 2E+02 0.0044 30.5 16.2 79 17-95 201-291 (498)
234 PF09738 DUF2051: Double stran 63.5 1.8E+02 0.0039 29.8 15.7 93 80-185 78-170 (302)
235 KOG4460|consensus 63.0 59 0.0013 36.1 10.2 18 33-50 608-625 (741)
236 PF13863 DUF4200: Domain of un 62.9 99 0.0021 26.5 11.4 45 21-65 5-49 (126)
237 PF02994 Transposase_22: L1 tr 62.9 12 0.00026 39.0 5.1 11 100-110 108-118 (370)
238 PF13514 AAA_27: AAA domain 62.8 3.3E+02 0.0071 32.5 19.7 39 100-138 892-930 (1111)
239 PRK10361 DNA recombination pro 62.4 2.4E+02 0.0052 30.8 17.3 12 157-168 170-181 (475)
240 PF06103 DUF948: Bacterial pro 62.3 61 0.0013 26.5 8.3 29 113-141 28-56 (90)
241 KOG4552|consensus 62.2 85 0.0018 30.8 10.2 30 43-72 10-39 (272)
242 PF10473 CENP-F_leu_zip: Leuci 62.1 1.3E+02 0.0028 27.5 11.5 20 76-95 56-75 (140)
243 COG3883 Uncharacterized protei 61.9 1.8E+02 0.004 29.3 18.4 52 21-72 46-97 (265)
244 KOG4302|consensus 61.8 2.6E+02 0.0056 31.8 15.3 47 74-120 94-140 (660)
245 PF05266 DUF724: Protein of un 61.1 1E+02 0.0023 29.3 10.7 87 51-141 72-161 (190)
246 PF01920 Prefoldin_2: Prefoldi 61.1 11 0.00023 31.3 3.6 18 44-61 22-39 (106)
247 cd07307 BAR The Bin/Amphiphysi 60.8 1.2E+02 0.0025 26.6 14.4 42 31-72 4-45 (194)
248 COG1842 PspA Phage shock prote 60.7 1.2E+02 0.0027 29.6 11.3 58 77-134 11-68 (225)
249 PRK09343 prefoldin subunit bet 60.7 1.1E+02 0.0023 27.0 9.9 47 36-82 16-64 (121)
250 PF10157 DUF2365: Uncharacteri 60.1 46 0.001 30.7 7.8 61 50-110 54-119 (149)
251 PRK10361 DNA recombination pro 60.0 1.8E+02 0.0038 31.8 13.3 17 120-136 142-158 (475)
252 PF06785 UPF0242: Uncharacteri 59.7 2.3E+02 0.005 29.7 15.8 95 22-120 70-171 (401)
253 PRK14127 cell division protein 59.7 41 0.0009 29.4 7.0 16 80-95 86-101 (109)
254 PF05478 Prominin: Prominin; 59.4 2E+02 0.0043 33.2 14.4 59 83-141 298-358 (806)
255 PF04740 LXG: LXG domain of WX 59.1 1.5E+02 0.0033 27.5 15.9 77 18-96 8-88 (204)
256 TIGR02231 conserved hypothetic 59.1 49 0.0011 35.8 9.1 28 30-57 74-101 (525)
257 COG4026 Uncharacterized protei 58.9 56 0.0012 32.4 8.4 37 25-61 147-183 (290)
258 PF07139 DUF1387: Protein of u 58.9 52 0.0011 33.7 8.6 67 18-87 155-222 (302)
259 KOG4809|consensus 58.5 2.8E+02 0.006 31.0 14.2 73 60-132 371-456 (654)
260 PF04102 SlyX: SlyX; InterPro 58.3 47 0.001 26.4 6.6 49 18-66 2-50 (69)
261 TIGR03319 YmdA_YtgF conserved 58.3 1.8E+02 0.004 31.8 13.3 10 411-420 462-471 (514)
262 TIGR00996 Mtu_fam_mce virulenc 58.1 69 0.0015 31.5 9.4 82 60-141 190-271 (291)
263 PRK12704 phosphodiesterase; Pr 58.1 42 0.0009 36.7 8.4 8 412-419 469-476 (520)
264 PF05622 HOOK: HOOK protein; 58.0 3.3 7.2E-05 46.5 0.0 72 45-120 305-379 (713)
265 PF15450 DUF4631: Domain of un 57.8 3E+02 0.0065 30.4 18.7 22 84-105 306-327 (531)
266 PF14915 CCDC144C: CCDC144C pr 57.6 2.3E+02 0.005 29.1 19.5 99 15-113 1-111 (305)
267 PRK13729 conjugal transfer pil 57.6 23 0.00051 38.3 6.2 44 21-64 77-120 (475)
268 cd07599 BAR_Rvs167p The Bin/Am 57.5 1.7E+02 0.0038 27.7 17.4 52 21-72 3-54 (216)
269 TIGR02449 conserved hypothetic 57.3 30 0.00065 27.7 5.3 43 13-55 21-63 (65)
270 PF10475 DUF2450: Protein of u 57.3 2E+02 0.0043 28.8 12.5 10 103-112 87-96 (291)
271 PF11932 DUF3450: Protein of u 57.1 75 0.0016 31.0 9.3 26 86-111 91-116 (251)
272 PRK10698 phage shock protein P 57.1 1.8E+02 0.0039 28.2 11.7 45 77-121 11-55 (222)
273 KOG0971|consensus 57.0 2.3E+02 0.005 33.5 13.9 13 43-55 419-431 (1243)
274 PF13166 AAA_13: AAA domain 56.7 3.2E+02 0.0069 30.4 15.3 16 100-115 380-395 (712)
275 PF03357 Snf7: Snf7; InterPro 55.9 96 0.0021 27.6 9.2 29 22-50 3-31 (171)
276 PF10186 Atg14: UV radiation r 55.9 2E+02 0.0044 27.9 14.7 7 239-245 173-179 (302)
277 PF06705 SF-assemblin: SF-asse 55.5 2.1E+02 0.0045 27.9 17.1 14 49-62 93-106 (247)
278 PF10779 XhlA: Haemolysin XhlA 55.5 29 0.00062 27.6 5.0 31 82-116 2-32 (71)
279 PRK09546 zntB zinc transporter 55.4 1.8E+02 0.0038 29.4 11.9 19 38-56 154-172 (324)
280 PRK12704 phosphodiesterase; Pr 55.0 2.3E+02 0.0049 31.1 13.3 60 84-144 91-150 (520)
281 PF06705 SF-assemblin: SF-asse 55.0 2.1E+02 0.0046 27.8 17.9 39 18-56 10-49 (247)
282 PF11068 YlqD: YlqD protein; 54.9 66 0.0014 29.0 7.7 33 89-121 19-51 (131)
283 KOG4552|consensus 54.9 28 0.00061 34.0 5.6 35 24-58 64-98 (272)
284 PF12308 Noelin-1: Neurogenesi 54.8 43 0.00094 28.9 6.1 59 7-65 34-99 (101)
285 PF00509 Hemagglutinin: Haemag 54.8 48 0.001 36.5 8.0 86 88-179 366-451 (550)
286 PF12252 SidE: Dot/Icm substra 54.8 2.2E+02 0.0048 34.2 13.4 29 76-106 1067-1095(1439)
287 PRK10807 paraquat-inducible pr 54.8 78 0.0017 34.9 9.8 106 72-182 413-527 (547)
288 PF15003 HAUS2: HAUS augmin-li 54.7 2E+02 0.0042 29.3 11.7 27 76-102 130-156 (277)
289 PRK11281 hypothetical protein; 54.6 3E+02 0.0064 33.3 15.0 7 376-382 562-568 (1113)
290 PF10158 LOH1CR12: Tumour supp 54.6 1.6E+02 0.0036 26.4 10.7 68 107-177 34-102 (131)
291 PF02403 Seryl_tRNA_N: Seryl-t 54.5 1.3E+02 0.0028 25.3 10.3 41 99-139 24-64 (108)
292 PRK00106 hypothetical protein; 54.4 60 0.0013 35.8 8.8 9 412-420 484-492 (535)
293 KOG1962|consensus 54.3 80 0.0017 30.9 8.7 24 104-127 158-181 (216)
294 PF05529 Bap31: B-cell recepto 54.2 62 0.0014 30.2 7.9 32 101-132 158-189 (192)
295 PF10368 YkyA: Putative cell-w 53.8 2.1E+02 0.0046 27.5 12.3 14 48-61 39-52 (204)
296 KOG1924|consensus 53.4 1.2E+02 0.0026 35.2 10.9 66 21-89 884-963 (1102)
297 PF02994 Transposase_22: L1 tr 53.4 45 0.00098 34.8 7.4 8 183-190 183-190 (370)
298 TIGR03319 YmdA_YtgF conserved 53.3 2.6E+02 0.0056 30.7 13.4 60 84-144 85-144 (514)
299 COG2433 Uncharacterized conser 53.2 1.1E+02 0.0025 34.2 10.6 47 102-148 420-466 (652)
300 KOG3229|consensus 53.2 2.3E+02 0.005 27.8 12.8 83 106-189 63-145 (227)
301 KOG3091|consensus 53.2 3.4E+02 0.0073 29.8 13.8 19 77-95 388-406 (508)
302 PF12795 MscS_porin: Mechanose 52.9 2.2E+02 0.0048 27.5 13.9 38 99-136 101-138 (240)
303 PF00015 MCPsignal: Methyl-acc 52.9 1.8E+02 0.0039 26.5 16.6 154 18-174 21-199 (213)
304 KOG0946|consensus 52.3 2.1E+02 0.0044 33.4 12.5 28 121-148 858-885 (970)
305 PLN03229 acetyl-coenzyme A car 52.3 1.8E+02 0.0039 33.5 12.1 20 121-140 600-619 (762)
306 PF05377 FlaC_arch: Flagella a 52.1 25 0.00054 27.3 3.9 36 106-141 2-37 (55)
307 PF10046 BLOC1_2: Biogenesis o 51.9 1.5E+02 0.0032 25.1 10.6 35 16-50 3-37 (99)
308 PF05911 DUF869: Plant protein 51.8 4.4E+02 0.0095 30.6 15.6 40 128-168 167-206 (769)
309 PF05377 FlaC_arch: Flagella a 51.8 22 0.00047 27.6 3.5 43 46-88 5-47 (55)
310 KOG0980|consensus 51.7 4.7E+02 0.01 30.9 17.9 13 267-279 634-646 (980)
311 KOG0243|consensus 50.6 1.7E+02 0.0037 34.8 11.9 23 19-41 447-469 (1041)
312 PF10805 DUF2730: Protein of u 50.4 46 0.001 28.6 5.8 62 19-80 34-97 (106)
313 PF05130 FlgN: FlgN protein; 50.3 99 0.0021 26.2 8.0 66 70-141 35-100 (143)
314 PF05483 SCP-1: Synaptonemal c 50.2 4.5E+02 0.0097 30.2 19.0 35 107-141 373-407 (786)
315 PRK15048 methyl-accepting chem 50.1 3E+02 0.0066 29.6 13.4 18 131-148 356-373 (553)
316 PRK15422 septal ring assembly 49.6 84 0.0018 26.1 6.8 35 82-117 3-38 (79)
317 COG2433 Uncharacterized conser 49.5 60 0.0013 36.3 7.7 13 20-32 359-371 (652)
318 PF11172 DUF2959: Protein of u 49.0 2.6E+02 0.0056 27.1 12.4 83 30-112 67-159 (201)
319 PF12252 SidE: Dot/Icm substra 48.9 2.6E+02 0.0057 33.6 12.8 30 80-109 1180-1209(1439)
320 COG1392 Phosphate transport re 48.8 2.6E+02 0.0057 27.1 16.9 136 12-150 16-165 (217)
321 KOG0972|consensus 48.6 1.4E+02 0.003 30.9 9.5 95 69-167 219-313 (384)
322 TIGR01010 BexC_CtrB_KpsE polys 48.4 2.7E+02 0.0058 28.5 12.1 81 36-116 172-261 (362)
323 PF15066 CAGE1: Cancer-associa 48.0 4.1E+02 0.0089 29.1 15.5 72 73-148 363-434 (527)
324 PF15450 DUF4631: Domain of un 48.0 4.2E+02 0.0092 29.3 15.4 24 117-140 411-434 (531)
325 PF14523 Syntaxin_2: Syntaxin- 47.9 1.3E+02 0.0029 24.7 8.1 15 78-92 9-23 (102)
326 PF12325 TMF_TATA_bd: TATA ele 47.8 1.4E+02 0.0029 26.6 8.5 66 18-97 21-86 (120)
327 PF03357 Snf7: Snf7; InterPro 47.8 49 0.0011 29.5 5.9 19 18-36 13-31 (171)
328 PF12329 TMF_DNA_bd: TATA elem 47.8 1E+02 0.0022 24.9 7.1 45 24-68 2-46 (74)
329 PF03904 DUF334: Domain of unk 47.8 1.2E+02 0.0026 29.9 8.8 15 127-141 122-136 (230)
330 PF08946 Osmo_CC: Osmosensory 47.5 41 0.00089 25.1 4.2 33 17-49 9-41 (46)
331 PF04048 Sec8_exocyst: Sec8 ex 47.2 1.7E+02 0.0037 26.2 9.3 44 124-167 92-135 (142)
332 COG3074 Uncharacterized protei 47.1 1.5E+02 0.0033 24.2 7.8 43 107-149 7-49 (79)
333 PF05911 DUF869: Plant protein 47.1 5.2E+02 0.011 30.0 17.4 58 82-139 592-659 (769)
334 PF01920 Prefoldin_2: Prefoldi 47.0 1.4E+02 0.003 24.5 8.1 25 37-61 8-32 (106)
335 PF05622 HOOK: HOOK protein; 46.7 6.5 0.00014 44.2 0.0 19 100-118 455-473 (713)
336 PF08172 CASP_C: CASP C termin 46.5 89 0.0019 31.0 7.9 30 98-127 87-116 (248)
337 KOG4559|consensus 46.5 1.2E+02 0.0025 26.6 7.5 82 57-146 27-110 (120)
338 PF09728 Taxilin: Myosin-like 46.4 3.4E+02 0.0074 27.7 16.0 18 101-118 241-258 (309)
339 KOG0982|consensus 46.3 4.2E+02 0.0091 28.8 15.1 50 98-147 319-368 (502)
340 PF03961 DUF342: Protein of un 46.0 93 0.002 33.1 8.6 27 100-126 330-356 (451)
341 PF07200 Mod_r: Modifier of ru 45.6 2.2E+02 0.0048 25.3 12.3 70 79-150 7-80 (150)
342 PF06248 Zw10: Centromere/kine 45.4 3.2E+02 0.0069 30.1 12.8 21 101-121 80-100 (593)
343 TIGR03752 conj_TIGR03752 integ 45.3 1.4E+02 0.0031 32.5 9.6 48 6-53 52-99 (472)
344 TIGR00020 prfB peptide chain r 45.0 1.2E+02 0.0025 32.0 8.9 16 19-34 6-21 (364)
345 COG0216 PrfA Protein chain rel 44.8 79 0.0017 33.1 7.4 18 36-53 9-26 (363)
346 PF05483 SCP-1: Synaptonemal c 44.8 5.4E+02 0.012 29.6 18.9 36 115-150 584-619 (786)
347 PRK00578 prfB peptide chain re 44.4 1.2E+02 0.0025 32.0 8.8 18 18-35 5-22 (367)
348 PF12761 End3: Actin cytoskele 44.1 2.1E+02 0.0045 27.7 9.6 16 46-61 137-152 (195)
349 KOG4677|consensus 43.7 4.7E+02 0.01 28.6 15.9 46 122-167 306-352 (554)
350 KOG4657|consensus 43.7 2.3E+02 0.0051 28.1 10.0 103 64-170 21-125 (246)
351 PF15254 CCDC14: Coiled-coil d 43.7 3.2E+02 0.007 31.7 12.4 22 9-30 397-418 (861)
352 COG3352 FlaC Putative archaeal 43.7 1.9E+02 0.0041 27.0 8.9 26 81-106 42-67 (157)
353 KOG3759|consensus 43.5 76 0.0016 34.5 7.2 88 49-141 65-161 (621)
354 PF07111 HCR: Alpha helical co 43.5 5.6E+02 0.012 29.5 14.0 142 30-173 118-270 (739)
355 PF10158 LOH1CR12: Tumour supp 43.4 2.3E+02 0.0049 25.5 9.3 19 75-93 97-115 (131)
356 PRK05431 seryl-tRNA synthetase 43.4 86 0.0019 33.3 7.8 32 105-136 29-60 (425)
357 PF13094 CENP-Q: CENP-Q, a CEN 43.2 1E+02 0.0022 27.9 7.3 51 14-64 28-78 (160)
358 PF09789 DUF2353: Uncharacteri 43.0 4E+02 0.0087 27.6 12.2 18 150-167 201-218 (319)
359 PRK00409 recombination and DNA 42.7 1.7E+02 0.0036 33.7 10.4 8 126-133 585-592 (782)
360 PF06009 Laminin_II: Laminin D 42.4 8.1 0.00018 34.6 -0.1 15 119-133 91-105 (138)
361 PF15456 Uds1: Up-regulated Du 41.9 2.5E+02 0.0055 25.0 9.4 33 123-155 20-52 (124)
362 TIGR03752 conj_TIGR03752 integ 41.8 1.1E+02 0.0024 33.2 8.2 11 238-248 170-180 (472)
363 PF07426 Dynactin_p22: Dynacti 41.7 2.8E+02 0.0061 26.0 10.1 126 18-143 35-165 (174)
364 PF12709 Kinetocho_Slk19: Cent 41.6 1.3E+02 0.0028 25.5 6.9 50 36-85 36-86 (87)
365 PF05529 Bap31: B-cell recepto 41.5 1.1E+02 0.0023 28.6 7.3 32 118-149 154-185 (192)
366 PF15290 Syntaphilin: Golgi-lo 41.0 4.1E+02 0.009 27.2 11.5 24 22-45 63-86 (305)
367 PF05508 Ran-binding: RanGTP-b 40.8 1.2E+02 0.0025 31.3 7.8 57 51-119 45-106 (302)
368 COG3264 Small-conductance mech 40.4 4.5E+02 0.0099 30.7 13.1 49 105-155 140-189 (835)
369 PF04129 Vps52: Vps52 / Sac2 f 40.4 4.6E+02 0.01 28.5 12.9 59 36-94 16-74 (508)
370 PF06818 Fez1: Fez1; InterPro 40.4 3.4E+02 0.0074 26.4 10.5 42 29-70 12-53 (202)
371 PRK10246 exonuclease subunit S 40.3 7.1E+02 0.015 29.7 17.2 22 100-121 780-801 (1047)
372 PF01544 CorA: CorA-like Mg2+ 40.1 1.8E+02 0.004 27.8 9.0 9 62-70 151-159 (292)
373 PF05064 Nsp1_C: Nsp1-like C-t 39.9 40 0.00088 29.4 3.9 51 25-75 55-105 (116)
374 cd00584 Prefoldin_alpha Prefol 39.9 1E+02 0.0022 26.7 6.5 18 101-118 98-115 (129)
375 PF05597 Phasin: Poly(hydroxya 39.5 2E+02 0.0044 25.9 8.4 22 103-124 108-129 (132)
376 PHA03161 hypothetical protein; 39.4 1.3E+02 0.0028 27.9 7.1 83 13-110 31-113 (150)
377 KOG4005|consensus 39.3 1.4E+02 0.0029 30.0 7.7 61 37-97 86-147 (292)
378 COG5414 TATA-binding protein-a 39.3 68 0.0015 33.0 5.8 29 10-38 331-359 (392)
379 cd00890 Prefoldin Prefoldin is 39.2 2.4E+02 0.0051 24.0 8.6 25 100-124 97-121 (129)
380 KOG2260|consensus 39.1 2.2E+02 0.0047 30.1 9.5 42 17-58 37-78 (372)
381 PF11853 DUF3373: Protein of u 39.1 25 0.00055 38.2 3.0 51 28-83 32-85 (489)
382 KOG3684|consensus 39.0 1.1E+02 0.0025 33.1 7.7 72 32-112 392-463 (489)
383 KOG0982|consensus 38.7 3.6E+02 0.0078 29.3 11.1 23 63-85 340-362 (502)
384 PHA02675 ORF104 fusion protein 38.5 88 0.0019 26.3 5.4 28 44-71 54-81 (90)
385 PLN02320 seryl-tRNA synthetase 38.3 1.4E+02 0.0031 32.7 8.5 33 104-136 93-125 (502)
386 PF06320 GCN5L1: GCN5-like pro 38.2 2.8E+02 0.0062 24.5 10.5 79 45-127 37-115 (121)
387 PF02346 Vac_Fusion: Chordopox 38.2 1E+02 0.0022 24.1 5.4 50 22-71 3-52 (57)
388 KOG2196|consensus 37.9 4.3E+02 0.0094 26.5 11.3 13 83-95 145-157 (254)
389 PF03915 AIP3: Actin interacti 37.8 3.3E+02 0.0072 29.3 11.0 64 73-143 207-271 (424)
390 KOG4514|consensus 37.7 3.1E+02 0.0068 26.4 9.6 24 49-72 126-149 (222)
391 KOG1656|consensus 37.7 2E+02 0.0043 28.1 8.4 19 18-36 26-44 (221)
392 KOG4360|consensus 37.6 2.2E+02 0.0047 31.5 9.5 115 14-131 160-302 (596)
393 PF05266 DUF724: Protein of un 37.6 2.7E+02 0.0058 26.5 9.4 28 111-138 159-186 (190)
394 PF15188 CCDC-167: Coiled-coil 37.6 1.2E+02 0.0026 25.5 6.1 58 19-76 4-64 (85)
395 cd00890 Prefoldin Prefoldin is 37.6 1.1E+02 0.0024 26.1 6.3 8 33-40 12-19 (129)
396 TIGR00414 serS seryl-tRNA synt 37.4 1.4E+02 0.003 31.7 8.2 33 104-136 30-62 (418)
397 KOG4603|consensus 37.4 1.1E+02 0.0024 29.1 6.5 23 91-115 112-134 (201)
398 PRK14011 prefoldin subunit alp 37.4 93 0.002 28.4 6.0 29 36-64 12-40 (144)
399 PF09744 Jnk-SapK_ap_N: JNK_SA 36.9 2.8E+02 0.006 25.8 9.1 45 45-89 93-137 (158)
400 PTZ00446 vacuolar sorting prot 36.8 2.4E+02 0.0053 27.0 8.9 28 48-75 74-101 (191)
401 PRK02119 hypothetical protein; 36.6 2.3E+02 0.0049 22.9 8.3 21 160-180 21-41 (73)
402 PF03962 Mnd1: Mnd1 family; I 36.6 2.2E+02 0.0048 27.0 8.6 74 18-91 74-154 (188)
403 TIGR01000 bacteriocin_acc bact 36.4 5.5E+02 0.012 27.2 19.2 24 18-41 95-118 (457)
404 KOG3229|consensus 36.3 2.5E+02 0.0055 27.5 8.9 17 58-74 61-77 (227)
405 PRK02119 hypothetical protein; 36.1 91 0.002 25.2 5.1 53 37-92 5-57 (73)
406 PF04977 DivIC: Septum formati 36.0 1.4E+02 0.0031 23.1 6.3 46 24-69 21-69 (80)
407 PRK00409 recombination and DNA 35.7 2.5E+02 0.0055 32.3 10.4 23 79-101 516-538 (782)
408 PF07798 DUF1640: Protein of u 35.6 3.6E+02 0.0079 24.9 9.9 97 17-113 55-154 (177)
409 PRK13182 racA polar chromosome 35.5 96 0.0021 29.2 5.9 13 83-95 129-141 (175)
410 PF13870 DUF4201: Domain of un 35.5 3.6E+02 0.0077 24.8 17.3 37 100-136 94-130 (177)
411 PF10392 COG5: Golgi transport 35.3 3.1E+02 0.0068 24.1 10.8 66 103-168 50-116 (132)
412 PRK10698 phage shock protein P 35.2 3.4E+02 0.0075 26.3 9.9 43 19-61 98-140 (222)
413 COG1842 PspA Phage shock prote 35.1 4.4E+02 0.0096 25.8 15.3 30 66-95 46-75 (225)
414 PHA02414 hypothetical protein 34.9 2.1E+02 0.0046 24.8 7.2 17 79-95 4-20 (111)
415 TIGR01069 mutS2 MutS2 family p 34.8 3.1E+02 0.0068 31.6 11.0 7 372-378 756-762 (771)
416 PLN02678 seryl-tRNA synthetase 34.8 1.4E+02 0.0031 32.1 7.8 33 104-136 33-65 (448)
417 PF05700 BCAS2: Breast carcino 34.7 1.9E+02 0.0042 27.8 8.1 54 42-95 137-198 (221)
418 PF03310 Cauli_DNA-bind: Cauli 34.7 1.5E+02 0.0033 26.5 6.6 29 113-141 1-29 (121)
419 cd07667 BAR_SNX30 The Bin/Amph 34.6 4.7E+02 0.01 26.0 15.7 37 28-64 59-95 (240)
420 PF01576 Myosin_tail_1: Myosin 34.6 13 0.00028 43.0 0.0 160 18-179 368-535 (859)
421 PRK00106 hypothetical protein; 34.6 5E+02 0.011 28.8 12.0 43 99-141 120-162 (535)
422 TIGR00996 Mtu_fam_mce virulenc 34.5 4E+02 0.0086 26.2 10.5 66 58-127 167-232 (291)
423 PF08181 DegQ: DegQ (SacQ) fam 34.2 50 0.0011 24.2 2.9 36 42-77 5-40 (46)
424 PF06810 Phage_GP20: Phage min 34.1 1.2E+02 0.0026 27.9 6.2 75 36-110 8-82 (155)
425 COG1730 GIM5 Predicted prefold 34.1 2.2E+02 0.0048 26.1 7.9 35 22-56 8-42 (145)
426 PF06248 Zw10: Centromere/kine 34.1 4.4E+02 0.0095 29.0 11.7 51 45-95 11-62 (593)
427 PF08687 ASD2: Apx/Shroom doma 34.0 5.1E+02 0.011 26.2 15.0 61 103-165 196-261 (264)
428 PF03882 KicB: KicB killing fa 34.0 2.6E+02 0.0055 30.0 9.2 61 77-137 160-232 (440)
429 KOG4571|consensus 33.8 1.5E+02 0.0034 30.2 7.3 36 30-65 251-286 (294)
430 PRK05260 condesin subunit F; P 33.6 2.7E+02 0.0058 30.0 9.3 62 77-138 160-233 (440)
431 PF06785 UPF0242: Uncharacteri 33.6 5.9E+02 0.013 26.8 13.6 44 98-141 188-231 (401)
432 PF06148 COG2: COG (conserved 33.5 31 0.00066 30.4 2.2 15 47-61 36-50 (133)
433 PF00769 ERM: Ezrin/radixin/mo 33.1 4.8E+02 0.01 25.7 10.6 124 18-141 3-126 (246)
434 PRK05683 flgK flagellar hook-a 33.0 3.2E+02 0.007 31.0 10.5 24 12-35 64-87 (676)
435 PF10481 CENP-F_N: Cenp-F N-te 32.9 2.8E+02 0.006 28.4 8.9 23 59-81 64-86 (307)
436 PF04129 Vps52: Vps52 / Sac2 f 32.6 77 0.0017 34.4 5.5 68 73-140 15-85 (508)
437 PF10212 TTKRSYEDQ: Predicted 32.6 4.3E+02 0.0093 29.2 10.9 11 132-142 487-497 (518)
438 PF14988 DUF4515: Domain of un 32.5 4.6E+02 0.01 25.2 17.8 22 18-39 52-73 (206)
439 PF08172 CASP_C: CASP C termin 32.3 85 0.0018 31.2 5.2 51 39-92 84-134 (248)
440 PF07544 Med9: RNA polymerase 32.3 62 0.0013 26.6 3.7 43 83-126 39-81 (83)
441 PF05064 Nsp1_C: Nsp1-like C-t 32.2 1.3E+02 0.0029 26.2 5.9 42 19-60 63-104 (116)
442 KOG1655|consensus 32.1 4.6E+02 0.01 25.6 9.8 86 80-176 16-111 (218)
443 PF14712 Snapin_Pallidin: Snap 32.1 2.8E+02 0.006 22.6 8.1 24 72-95 64-87 (92)
444 KOG3390|consensus 32.1 3.5E+02 0.0076 23.7 9.6 67 57-127 53-119 (120)
445 COG4980 GvpP Gas vesicle prote 32.0 2.3E+02 0.0051 25.1 7.4 42 77-118 70-111 (115)
446 PRK02793 phi X174 lysis protei 32.0 1.1E+02 0.0024 24.6 5.0 52 39-93 6-57 (72)
447 cd07655 F-BAR_PACSIN The F-BAR 32.0 4.3E+02 0.0093 26.0 10.2 27 103-129 167-193 (258)
448 KOG4603|consensus 31.8 1.5E+02 0.0033 28.3 6.4 64 73-145 80-143 (201)
449 PF10112 Halogen_Hydrol: 5-bro 31.7 4.3E+02 0.0094 24.7 10.1 10 95-104 131-140 (199)
450 KOG4637|consensus 31.6 4E+02 0.0088 28.4 10.1 13 129-141 266-278 (464)
451 PLN02939 transferase, transfer 31.5 9.7E+02 0.021 28.7 18.4 62 44-107 253-321 (977)
452 PLN03229 acetyl-coenzyme A car 31.5 8.8E+02 0.019 28.2 14.4 27 123-149 647-676 (762)
453 PF09787 Golgin_A5: Golgin sub 31.4 7.1E+02 0.015 27.1 16.4 28 114-141 277-304 (511)
454 PF13094 CENP-Q: CENP-Q, a CEN 31.4 1.2E+02 0.0027 27.4 5.9 57 82-138 23-82 (160)
455 PF03978 Borrelia_REV: Borreli 31.4 2.3E+02 0.0049 26.6 7.4 20 131-150 27-46 (160)
456 PF08581 Tup_N: Tup N-terminal 31.4 2.8E+02 0.0061 22.9 7.3 39 67-105 34-72 (79)
457 PF05508 Ran-binding: RanGTP-b 31.3 6E+02 0.013 26.2 12.3 64 86-149 45-108 (302)
458 TIGR00414 serS seryl-tRNA synt 31.3 1.7E+02 0.0038 31.0 7.7 26 46-71 35-60 (418)
459 PF15397 DUF4618: Domain of un 31.2 5.6E+02 0.012 25.8 17.5 58 62-122 81-138 (258)
460 KOG2115|consensus 31.1 4.7E+02 0.01 30.9 11.3 51 99-149 270-320 (951)
461 PF04297 UPF0122: Putative hel 31.1 1.1E+02 0.0023 26.5 5.0 59 62-127 40-98 (101)
462 PF05278 PEARLI-4: Arabidopsis 30.8 4.4E+02 0.0095 26.7 9.9 10 34-43 97-106 (269)
463 KOG3091|consensus 30.7 3.7E+02 0.0081 29.5 9.9 33 59-91 415-447 (508)
464 PF12777 MT: Microtubule-bindi 30.4 4.5E+02 0.0097 27.0 10.4 34 103-136 220-253 (344)
465 PRK07739 flgK flagellar hook-a 30.4 7.4E+02 0.016 26.9 13.3 54 121-179 142-195 (507)
466 PF14389 Lzipper-MIP1: Leucine 30.2 1.6E+02 0.0035 24.5 5.8 60 35-95 9-70 (88)
467 KOG4643|consensus 30.2 1E+03 0.023 28.7 19.3 46 53-98 413-462 (1195)
468 PF14257 DUF4349: Domain of un 29.8 41 0.00089 32.9 2.6 7 79-85 149-155 (262)
469 PF01496 V_ATPase_I: V-type AT 29.8 2.1E+02 0.0046 32.5 8.6 40 22-61 69-108 (759)
470 KOG1962|consensus 29.7 2.8E+02 0.0061 27.2 8.2 16 10-25 24-39 (216)
471 TIGR02338 gimC_beta prefoldin, 29.7 1.9E+02 0.0042 24.7 6.4 21 46-66 79-99 (110)
472 COG1382 GimC Prefoldin, chaper 29.7 4.1E+02 0.0089 23.7 10.9 28 67-94 8-35 (119)
473 PRK06945 flgK flagellar hook-a 29.5 4.8E+02 0.01 29.5 11.1 19 13-31 66-84 (651)
474 PF06009 Laminin_II: Laminin D 29.2 18 0.0004 32.3 0.0 41 98-138 25-65 (138)
475 KOG4673|consensus 29.2 9.6E+02 0.021 27.8 16.7 12 55-66 430-441 (961)
476 PF12329 TMF_DNA_bd: TATA elem 29.1 1.2E+02 0.0026 24.5 4.7 9 102-110 38-46 (74)
477 PF10046 BLOC1_2: Biogenesis o 29.1 3.5E+02 0.0076 22.8 11.3 93 86-181 3-95 (99)
478 PRK04406 hypothetical protein; 29.0 1.5E+02 0.0033 24.1 5.3 54 36-92 6-59 (75)
479 PF07798 DUF1640: Protein of u 29.0 4.7E+02 0.01 24.2 14.3 135 23-161 19-154 (177)
480 COG4717 Uncharacterized conser 28.8 1E+03 0.023 28.2 15.3 150 18-181 186-345 (984)
481 PF10392 COG5: Golgi transport 28.7 4.1E+02 0.0089 23.4 8.6 92 39-134 31-123 (132)
482 PF09304 Cortex-I_coil: Cortex 28.5 3.3E+02 0.0071 23.9 7.5 86 19-111 1-93 (107)
483 PF13747 DUF4164: Domain of un 28.4 1.8E+02 0.0038 24.4 5.8 73 74-147 17-89 (89)
484 PF12777 MT: Microtubule-bindi 28.4 1E+02 0.0022 31.6 5.3 92 18-109 219-310 (344)
485 PRK10807 paraquat-inducible pr 28.3 6E+02 0.013 28.1 11.4 99 79-181 413-526 (547)
486 TIGR02132 phaR_Bmeg polyhydrox 28.3 5.2E+02 0.011 24.8 9.3 96 19-114 71-174 (189)
487 KOG3564|consensus 28.2 3.6E+02 0.0079 29.7 9.3 89 70-169 20-108 (604)
488 PRK00888 ftsB cell division pr 28.2 2E+02 0.0044 24.7 6.3 50 21-70 28-80 (105)
489 cd00632 Prefoldin_beta Prefold 27.9 3.7E+02 0.008 22.6 9.0 98 18-130 4-103 (105)
490 PRK05561 DNA topoisomerase IV 27.9 4.3E+02 0.0093 30.4 10.5 111 23-133 362-480 (742)
491 COG1730 GIM5 Predicted prefold 27.9 3.1E+02 0.0068 25.2 7.7 118 19-136 5-140 (145)
492 KOG1655|consensus 27.8 5.8E+02 0.013 24.9 13.9 130 32-178 17-149 (218)
493 PF09789 DUF2353: Uncharacteri 27.8 7.1E+02 0.015 25.9 14.8 138 23-164 16-180 (319)
494 TIGR03545 conserved hypothetic 27.7 2.8E+02 0.006 30.8 8.7 86 83-170 168-262 (555)
495 TIGR00383 corA magnesium Mg(2+ 27.7 6.1E+02 0.013 25.1 11.6 128 25-174 140-267 (318)
496 COG4717 Uncharacterized conser 27.7 1.1E+03 0.024 28.0 15.2 165 19-189 682-849 (984)
497 PF07426 Dynactin_p22: Dynacti 27.7 5.2E+02 0.011 24.3 14.2 144 36-181 7-166 (174)
498 COG1463 Ttg2C ABC-type transpo 27.6 3.9E+02 0.0086 27.5 9.4 113 18-130 178-290 (359)
499 PLN02320 seryl-tRNA synthetase 27.6 2.4E+02 0.0052 31.0 8.1 65 105-171 94-163 (502)
500 PF01576 Myosin_tail_1: Myosin 27.5 20 0.00044 41.4 0.0 171 11-188 305-477 (859)
No 1
>smart00186 FBG Fibrinogen-related domains (FReDs). Domain present at the C-termini of fibrinogen beta and gamma chains, and a variety of fibrinogen-related proteins, including tenascin and Drosophila scabrous.
Probab=100.00 E-value=7e-71 Score=523.08 Aligned_cols=189 Identities=47% Similarity=0.926 Sum_probs=177.9
Q ss_pred CCCCCC-------CCCceEEEECCC-----cccccC----CceEEEEEecCCccccccChHhhccccCCCCccccccchh
Q psy14534 231 LPNDCE-------GHSGLQLISLGR-----SVLCDE----HHWMTIQRRYNGMQEFNLKWTDYAQGFGSPESEFWIGNDA 294 (423)
Q Consensus 231 ~p~dC~-------~~sGvY~I~p~~-----~v~Cd~----~GWTVIQrR~dGsv~FnR~W~eY~~GFG~~~gEfWLGLe~ 294 (423)
+|+||. ..||||+|.|+. .||||| +||||||||.||+|+|+|+|++|++|||++.||||||||+
T Consensus 1 ~p~~C~~~~~~g~~~sGvy~I~~~~~~~p~~v~Cd~~~~GgGWtVIQrR~dGsv~F~R~W~eY~~GFG~~~gefWlGLe~ 80 (212)
T smart00186 1 LPRDCSDVLQNGGKTSGLYTIYPDGSSRPLKVYCDMETDGGGWTVIQRRMDGSVDFYRDWKDYKEGFGNLAGEFWLGNEN 80 (212)
T ss_pred CCcChHHHHhcCCCCCceEEEeCCCCCCcEEEEeEEecCCCcEEEEEEeccCCCCCcccHHHHHHhhCCCCCCEEecchh
Confidence 588998 369999999864 379997 5899999999999999999999999999999999999999
Q ss_pred hhhhhccCcceEEEEEEecCCCeeEEEeeEEEEeccCCccccccccccCCCCC-ccCcCCCCCCCcccCCCCCCCCCCCC
Q psy14534 295 LHRLTSQDNMSLRIEFVDIYGKAWYAEYDTFSVASESEGYRLNLSGYHGNASD-AMTYQNNMKFSTIDRDNDLSNTHCAS 373 (423)
Q Consensus 295 ih~LT~~~~~~L~I~l~d~~g~~~~a~Y~~F~Vg~e~~~Y~L~lg~ysG~agD-sl~~hng~~FST~DrDnD~~~~nCA~ 373 (423)
||+||++++|+|+|+|+|++|...||+|+.|+|++|+++|+|+||+|+|+||| +|++|+|++|||+|+|||....|||.
T Consensus 81 ih~LT~~~~~eL~I~l~d~~g~~~~a~Y~~F~vg~e~~~Y~L~lg~y~G~agd~sl~~~~g~~FsT~D~dnd~~~~nCa~ 160 (212)
T smart00186 81 IHLLTSQGKYELRIDLEDWEGNTAYALYDSFKVADEADGYRLHIGGYSGTAGDASLTYHNGMQFSTYDRDNDKYSGNCAE 160 (212)
T ss_pred hhhhhccCceEEEEEEecCCCCEEEEEeeEEEecCcccceEEEEEeecCCccccccceeCCcEeeccCccCCCCcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999 69999999999999999987789999
Q ss_pred ccCCcccccCCCcCCCCCCCC------CCceeccCCCCceeeeceEEEEeeec
Q psy14534 374 NYEGGWWFSHCLHANLNGKFN------LGLTWFHSEKNEWMAVARSHMKIRRR 420 (423)
Q Consensus 374 ~~~GGWWy~~C~~sNLNG~Y~------~Gi~W~~~~~~~~~slk~~~M~IRp~ 420 (423)
.+.|||||+.|+.|||||+|. .||.|..+. +..++||+|+|||||.
T Consensus 161 ~~~gGWWy~~C~~sNLNG~y~~~~~~~~Gi~W~~~~-g~~~slk~~~MmIRp~ 212 (212)
T smart00186 161 EYGGGWWYNNCHAANLNGRYYPNNNYDNGINWATWK-GSWYSLKFTEMKIRPL 212 (212)
T ss_pred CCCCCEeCCCCCCcCCcccccCCCCCCCEEEEccCC-CcceeeeeEEEEEeeC
Confidence 999999999999999999996 389998774 4578999999999994
No 2
>cd00087 FReD Fibrinogen-related domains (FReDs); C terminal globular domain of fibrinogen. Fibrinogen is involved in blood clotting, being activated by thrombin to assemble into fibrin clots. The N-termini of 2 times 3 chains come together to form a globular arrangement called the disulfide knot. The C termini of fibrinogen chains end in globular domains, which are not completely equivalent. C terminal globular domains of the gamma chains (C-gamma) dimerize and bind to the GPR motif of the N-terminal domain of the alpha chain, while the GHR motif of N-terminal domain of the beta chain binds to the C terminal globular domains of another beta chain (C-beta), which leads to lattice formation.
Probab=100.00 E-value=1.6e-70 Score=521.76 Aligned_cols=189 Identities=47% Similarity=0.898 Sum_probs=177.9
Q ss_pred CCCCCC-------CCCceEEEECCC-----cccccC----CceEEEEEecCCccccccChHhhccccCCCCccccccchh
Q psy14534 231 LPNDCE-------GHSGLQLISLGR-----SVLCDE----HHWMTIQRRYNGMQEFNLKWTDYAQGFGSPESEFWIGNDA 294 (423)
Q Consensus 231 ~p~dC~-------~~sGvY~I~p~~-----~v~Cd~----~GWTVIQrR~dGsv~FnR~W~eY~~GFG~~~gEfWLGLe~ 294 (423)
+|.||. ..||||.|.|+. .||||| +||||||||.||+|+|+|+|++|++|||++.||||||||+
T Consensus 2 ~~~~C~~~~~~g~~~sGvy~I~~~~~~~p~~v~Cd~~~~GgGWtVIQrR~dgsv~F~R~W~~Y~~GFG~~~gefWlGLe~ 81 (215)
T cd00087 2 LPRDCSEVLQRGGRTSGVYTIQPPGSNEPFQVYCDMDTDGGGWTVIQRRGDGSVDFYRSWKEYKDGFGNLDGEFWLGLEK 81 (215)
T ss_pred CCcCHHHHHhCCCCCCcEEEEEcCCCCCcEEEEeeecCCCCceeeEEEeccCCCCccccHHHhccCcCCCCCCEEecchh
Confidence 588888 369999999864 489998 5899999999999999999999999999999999999999
Q ss_pred hhhhhccCcceEEEEEEecCCCeeEEEeeEEEEeccCCccccccccccCCCCCccCcCCCCCCCcccCCCCCCCCCCCCc
Q psy14534 295 LHRLTSQDNMSLRIEFVDIYGKAWYAEYDTFSVASESEGYRLNLSGYHGNASDAMTYQNNMKFSTIDRDNDLSNTHCASN 374 (423)
Q Consensus 295 ih~LT~~~~~~L~I~l~d~~g~~~~a~Y~~F~Vg~e~~~Y~L~lg~ysG~agDsl~~hng~~FST~DrDnD~~~~nCA~~ 374 (423)
||+||++++|+|+|+|+|++|..+||+|+.|.|++|+++|+|++|+|+|+|||+|++|+|++|||+|+|||....|||..
T Consensus 82 ih~LT~~~~~eL~I~l~d~~g~~~~a~Y~~F~v~~e~~~Y~L~~~~y~G~agd~l~~~~g~~FsT~Drdnd~~~~nCa~~ 161 (215)
T cd00087 82 IHLLTSQGPYELRIDLEDWEGNTAYAEYDSFKVGSESEGYRLTLGGYSGTAGDALSYHNGMKFSTFDRDNDGASGNCAES 161 (215)
T ss_pred hhhhhcCCceEEEEEEEcCCCCEEEEEEEEEEcCCcccceeEEEecccCCCCccccccCCCEEeccCccCCCCCCCCccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999876799999
Q ss_pred cCCcccccCCCcCCCCCCCC---------CCceeccCCCCceeeeceEEEEeeec
Q psy14534 375 YEGGWWFSHCLHANLNGKFN---------LGLTWFHSEKNEWMAVARSHMKIRRR 420 (423)
Q Consensus 375 ~~GGWWy~~C~~sNLNG~Y~---------~Gi~W~~~~~~~~~slk~~~M~IRp~ 420 (423)
+.|||||+.|+.+||||+|. .||.|..+. +.+|+||+|+|||||+
T Consensus 162 ~~gGWWy~~C~~sNLNG~y~~~~~~~~~~~gi~W~~~~-~~~~slk~~~MmIRp~ 215 (215)
T cd00087 162 YSGGWWYNSCHASNLNGRYYSGGHRNEYDNGINWATWK-GSTYSLKFTEMKIRPK 215 (215)
T ss_pred CCcCCcCCCCCCcCCCCcccCCCCCCCCCCEEEeccCC-CcceeeeEEEEEeeeC
Confidence 99999999999999999995 389998774 4578999999999996
No 3
>KOG2579|consensus
Probab=100.00 E-value=1.8e-70 Score=552.31 Aligned_cols=192 Identities=47% Similarity=0.873 Sum_probs=181.9
Q ss_pred CCCCCCC-------CCCceEEEECCC----cccccC----CceEEEEEecCCccccccChHhhccccCCCCccccccchh
Q psy14534 230 KLPNDCE-------GHSGLQLISLGR----SVLCDE----HHWMTIQRRYNGMQEFNLKWTDYAQGFGSPESEFWIGNDA 294 (423)
Q Consensus 230 ~~p~dC~-------~~sGvY~I~p~~----~v~Cd~----~GWTVIQrR~dGsv~FnR~W~eY~~GFG~~~gEfWLGLe~ 294 (423)
..|+||. ..||+|+|+|++ .||||| |||||||||.||+|||+|+|++|+.|||++.||||||||+
T Consensus 120 ~~~~dC~e~~~~g~~~sg~y~i~~~~~~p~~VyCDm~t~gGGWTviQrR~dGsvnF~R~W~~Yk~GFG~~~gEfWLGle~ 199 (338)
T KOG2579|consen 120 GPPRDCSELLQRGHSLSGVYTIYPPGCRPFQVYCDMDTDGGGWTVIQRREDGSVNFNRGWQDYKDGFGNLTGEFWLGLEK 199 (338)
T ss_pred CCcccHHHHHhcCCCCceEEEecCCCCceeEeecccccCCCCEEEEEEccCCCCCCccChHHHhhccCCCCcceeecchH
Confidence 4569998 479999999885 699999 5899999999999999999999999999999999999999
Q ss_pred hhhhhccCcceEEEEEEecCCCeeEEEeeEEEEeccCCccccccccccCCCCCccCcCCCCCCCcccCCCCCCCCCCCCc
Q psy14534 295 LHRLTSQDNMSLRIEFVDIYGKAWYAEYDTFSVASESEGYRLNLSGYHGNASDAMTYQNNMKFSTIDRDNDLSNTHCASN 374 (423)
Q Consensus 295 ih~LT~~~~~~L~I~l~d~~g~~~~a~Y~~F~Vg~e~~~Y~L~lg~ysG~agDsl~~hng~~FST~DrDnD~~~~nCA~~ 374 (423)
||+||.+++|+|||+|+||+|+.+||.|++|.|++|+++|+|+||+|+|+|||||++|+|++|||+|+|||....+||..
T Consensus 200 ih~LT~~~~~~LrV~L~d~~g~~a~a~Y~~F~v~~e~~~Y~L~l~~y~g~agDal~~~~g~~FST~D~DnD~~~~~CA~~ 279 (338)
T KOG2579|consen 200 LHQLTTQGNYELRVELEDWEGNTAYAEYDSFSVGSEAEGYRLHLGEYSGNAGDALSYHNGMKFSTWDRDNDSALPNCAES 279 (338)
T ss_pred HHhhccCCCeEEEEEEecCCCCeEEEEeccceecCcccCceEEEecccccchhhhhccCCCccccccCCCCccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccccCCCcCCCCCCCC----------CCceeccCCCCceeeeceEEEEeeecCC
Q psy14534 375 YEGGWWFSHCLHANLNGKFN----------LGLTWFHSEKNEWMAVARSHMKIRRRQS 422 (423)
Q Consensus 375 ~~GGWWy~~C~~sNLNG~Y~----------~Gi~W~~~~~~~~~slk~~~M~IRp~~~ 422 (423)
+.|||||++|+.+||||+|+ .||.|+.|.+ .+||||+|+|||||...
T Consensus 280 ~~GgWWy~~C~~sNLNG~y~~~~~~~~~~~~Gi~W~~w~g-~~~Slk~v~M~IrP~~~ 336 (338)
T KOG2579|consen 280 YKGGWWYNNCHASNLNGRYYTGGLYNPVTSNGIRWATWKG-GTYSLKRVRMKIRPFDF 336 (338)
T ss_pred CCCccccccccccCcCCeeccCccccccccCceEEEeeeC-CccccceEEEEEeccCC
Confidence 99999999999999999986 2799998754 48999999999999754
No 4
>PF00147 Fibrinogen_C: Fibrinogen beta and gamma chains, C-terminal globular domain Fibrinopeptides not included.; InterPro: IPR002181 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the C-terminal globular D domain of the alpha, beta and gamma chains. These domains are related to domains in other proteins: in the Parastichopus parvimensis (Sea cucumber) fibrogen-like FreP-A and FreP-B proteins; in the C terminus of the Drosophila scabrous protein that is involved in the regulation of neurogenesis, possibly through the inhibition of R8 cell differentiation; and in ficolin proteins, which display lectin activity towards N-acetylglucosamine through their fibrogen-like domains []. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0007165 signal transduction; PDB: 2J60_C 2J5Z_B 2J64_C 2J1G_E 2J2P_E 2J3U_B 2J3F_C 2J3O_A 2J0G_B 2J0H_E ....
Probab=100.00 E-value=3.8e-66 Score=497.87 Aligned_cols=188 Identities=46% Similarity=0.928 Sum_probs=165.1
Q ss_pred CCCCC-------CCCceEEEECCCc-----ccccC----CceEEEEEecCCccccccChHhhccccCCCC----cccccc
Q psy14534 232 PNDCE-------GHSGLQLISLGRS-----VLCDE----HHWMTIQRRYNGMQEFNLKWTDYAQGFGSPE----SEFWIG 291 (423)
Q Consensus 232 p~dC~-------~~sGvY~I~p~~~-----v~Cd~----~GWTVIQrR~dGsv~FnR~W~eY~~GFG~~~----gEfWLG 291 (423)
|+||. ..||||+|+|+.. ||||| +||||||||.+|+++|+|+|++|++|||++. +|||||
T Consensus 2 ~~dC~~~~~~g~~~sGvY~I~~~~~~~~~~V~Cdm~~~gGGWtVIqrR~~gs~~F~r~w~~Y~~GFG~~~~~~~~efWlG 81 (235)
T PF00147_consen 2 PRDCSDIYQSGGRTSGVYTIQPDGSYKPFQVYCDMETDGGGWTVIQRRFDGSVNFNRNWNDYKNGFGNLDTSGNGEFWLG 81 (235)
T ss_dssp BSSHHHHHHTTT-SSEEEEEECTTSSSEEEEEEECSGGGSEEEEEEEESSSTSTT---HHHHHHEEEETTTTSESSEEE-
T ss_pred CcCHHHHHhhCCCCCeEEEEeccccCCCEEEEEeccccccceeEEEEeecccccccccccceEeeeCCcccCcCCcEEec
Confidence 67776 5799999999764 89998 5899999999999999999999999999999 999999
Q ss_pred chhhhhhhccCcceEEEEEEecCCCeeEEEeeEEEEeccCCccccccccccCCCCCcc----------CcCCCCCCCccc
Q psy14534 292 NDALHRLTSQDNMSLRIEFVDIYGKAWYAEYDTFSVASESEGYRLNLSGYHGNASDAM----------TYQNNMKFSTID 361 (423)
Q Consensus 292 Le~ih~LT~~~~~~L~I~l~d~~g~~~~a~Y~~F~Vg~e~~~Y~L~lg~ysG~agDsl----------~~hng~~FST~D 361 (423)
||+||+||++++++|+|+|+|++|..+||.|+.|.|++++++|+|+||+|+|+|||+| +.|+|++|||+|
T Consensus 82 le~ih~lT~~~~~~L~i~l~d~~g~~~~a~Y~~F~V~~~~~~Y~L~~~~y~G~aG~~~~~~~~~~~~~~~~ng~~FsT~D 161 (235)
T PF00147_consen 82 LEKIHQLTNQGPYELRIELEDFDGNTAYARYDNFRVGSESENYRLTVGGYSGNAGDALSGGSTAGDSLSIHNGMPFSTYD 161 (235)
T ss_dssp HHHHHHHHTSSCEEEEEEEEETTSEEEEEEEEEEEE--GGGTTBEEEEEEEESS-SCCGC-STTHHHSTGGTTBEEBBTT
T ss_pred cccceeeeccccceEEEEEecccccccccccchhhcccccceEEEEEecccccccccccccccccccccccCCceeeccc
Confidence 9999999999999999999999999999999999999999999999999999999875 479999999999
Q ss_pred CCCC-CCCCCCCCccCCcccccCCCcCCCCCCCC---------------CCceeccCCCCceeeeceEEEEeeec
Q psy14534 362 RDND-LSNTHCASNYEGGWWFSHCLHANLNGKFN---------------LGLTWFHSEKNEWMAVARSHMKIRRR 420 (423)
Q Consensus 362 rDnD-~~~~nCA~~~~GGWWy~~C~~sNLNG~Y~---------------~Gi~W~~~~~~~~~slk~~~M~IRp~ 420 (423)
+||| ....|||..++|||||+.|+.+||||+|. .||.|.+|. +.+++||+|+|||||+
T Consensus 162 ~dnd~~~~~nCa~~~~gGWWy~~C~~~NLNG~y~~~~~~~~~~~~~~~~~Gi~W~~w~-g~~~slk~~~M~iRp~ 235 (235)
T PF00147_consen 162 RDNDGNPSGNCAQQYGGGWWYNNCGSSNLNGRYYPGGNYSWSMAKHGTGDGIFWYTWK-GSWYSLKSVEMKIRPY 235 (235)
T ss_dssp B--SSSSSSSHHHHHTSEBCESSSTSEETTSB-BTTSBSSSSSSTTSSTCCSEECCCH-CTTBEESEEEEEEEET
T ss_pred ccccccCCCCccccccCCEeeecccceeecCcEeCCCCCccccccccCCCceEEcccC-CCceeeeeEEEEEeeC
Confidence 9999 56789999999999999999999999883 389999774 5589999999999995
No 5
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=96.41 E-value=0.26 Score=56.53 Aligned_cols=21 Identities=14% Similarity=0.146 Sum_probs=9.8
Q ss_pred hHHHHHhhHHHHHHHHHHHHH
Q psy14534 17 LFLKTKHHLEKEQHVINHKMK 37 (423)
Q Consensus 17 ~~~~~~~~le~~~~~~~~~~~ 37 (423)
-+.+++..++.....+..++.
T Consensus 674 ~l~~e~~~l~~~~~~l~~~l~ 694 (1179)
T TIGR02168 674 ERRREIEELEEKIEELEEKIA 694 (1179)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 344455555554444444433
No 6
>KOG0971|consensus
Probab=96.33 E-value=0.31 Score=55.39 Aligned_cols=109 Identities=21% Similarity=0.204 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHhhhhhhhhhHHHHHHhhccc----cccchhhh-hhhhHHHHHHHHHHHHHHhhhcchhHHHHHHhhhh
Q psy14534 37 KTLQAINEEILQRISHLETSSQTNVKTLFNIT----KQISGVEH-LHSSMMELLESIETIENKVDYNLPTIQREISKLEF 111 (423)
Q Consensus 37 ~~l~~~~~~~~~r~~~~e~~~~~l~~~~~n~s----~q~~~~~k-~~~s~~el~e~ve~~~~~~d~~ip~~~~EI~e~e~ 111 (423)
..||..+|-+-|||..||+++..|+.++.|-- -+=+--+| |..+--+|-+.|=.+ -.+...=+.++-|+-.
T Consensus 328 esLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrL----RDlsA~ek~d~qK~~k 403 (1243)
T KOG0971|consen 328 ESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRL----RDLSASEKQDHQKLQK 403 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHH----HhcchHHHHHHHHHHH
Confidence 45555666788899999999999999998831 11111111 111111222222222 2244555778888888
Q ss_pred hhhhhhhhhhhhhhhhhhhHHHHHHHHhhhHHHHHHHH
Q psy14534 112 GVAQINSTLQVVNETRESDANYLKSTVSTLATLQEKVE 149 (423)
Q Consensus 112 ~l~q~ts~l~~~~Ee~~n~s~~i~s~~~sis~lqek~~ 149 (423)
++..+.+++..++---++++.++..+-..|..|||+++
T Consensus 404 elE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVD 441 (1243)
T KOG0971|consen 404 ELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVD 441 (1243)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888899888888888889999888888888999887
No 7
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=96.18 E-value=0.33 Score=53.50 Aligned_cols=67 Identities=12% Similarity=0.161 Sum_probs=43.7
Q ss_pred hhhhhhhhhhhhhhhhhhHHHHHHHHhhhHHHHHHHHH-----------H---HHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy14534 113 VAQINSTLQVVNETRESDANYLKSTVSTLATLQEKVEA-----------N---NIIMQALSDANYLKSTVSTLATLQEKV 178 (423)
Q Consensus 113 l~q~ts~l~~~~Ee~~n~s~~i~s~~~sis~lqek~~~-----------~---~kv~~le~Q~~~I~~l~~~v~~~~~ql 178 (423)
..+...+++.++++++.+..++..+-+..+.|+...+. + .+|..|.-|...|.+.+...+.+++++
T Consensus 442 ~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkei 521 (594)
T PF05667_consen 442 SKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKDVNRSAYTRRILEIVKNIRKQKEEIEKILSDTRELQKEI 521 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555666666666666666666666666655542 1 122347888999999998888888887
Q ss_pred H
Q psy14534 179 E 179 (423)
Q Consensus 179 ~ 179 (423)
+
T Consensus 522 N 522 (594)
T PF05667_consen 522 N 522 (594)
T ss_pred H
Confidence 5
No 8
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=96.13 E-value=0.55 Score=49.64 Aligned_cols=60 Identities=20% Similarity=0.189 Sum_probs=48.4
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhccccccchhhhh
Q psy14534 18 FLKTKHHLEKEQHVINHKMKTLQAINEEILQRISHLETSSQTNVKTLFNITKQISGVEHL 77 (423)
Q Consensus 18 ~~~~~~~le~~~~~~~~~~~~l~~~~~~~~~r~~~~e~~~~~l~~~~~n~s~q~~~~~k~ 77 (423)
...+|.++++++.....+...|++....+...|+.++.+..+.+..+-.+.++|+.++..
T Consensus 43 ~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~ 102 (420)
T COG4942 43 IQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNAR 102 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHH
Confidence 567778888888888888888888888888888888888888888888888888755543
No 9
>PHA02562 46 endonuclease subunit; Provisional
Probab=96.12 E-value=0.61 Score=50.02 Aligned_cols=27 Identities=11% Similarity=0.298 Sum_probs=16.3
Q ss_pred HHHhhhhhhhhhHHHHHHhhccccccc
Q psy14534 46 ILQRISHLETSSQTNVKTLFNITKQIS 72 (423)
Q Consensus 46 ~~~r~~~~e~~~~~l~~~~~n~s~q~~ 72 (423)
+......++.+..++.+++.|+..++.
T Consensus 225 l~~~~~~l~~~l~~l~~~i~~l~~~i~ 251 (562)
T PHA02562 225 LVEEAKTIKAEIEELTDELLNLVMDIE 251 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 333445666666677777777665544
No 10
>PRK03918 chromosome segregation protein; Provisional
Probab=96.00 E-value=0.46 Score=53.79 Aligned_cols=30 Identities=13% Similarity=0.269 Sum_probs=17.1
Q ss_pred HHHhhhhhhhhhHHHHHHhhccccccchhh
Q psy14534 46 ILQRISHLETSSQTNVKTLFNITKQISGVE 75 (423)
Q Consensus 46 ~~~r~~~~e~~~~~l~~~~~n~s~q~~~~~ 75 (423)
+..++..++.+..++.+++..+..+|..++
T Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 583 (880)
T PRK03918 554 LKKKLAELEKKLDELEEELAELLKELEELG 583 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 344555555556666666666666666544
No 11
>PRK02224 chromosome segregation protein; Provisional
Probab=95.86 E-value=0.6 Score=53.05 Aligned_cols=10 Identities=20% Similarity=0.318 Sum_probs=4.5
Q ss_pred HHhccCCCCC
Q psy14534 187 ALRNGRSEGL 196 (423)
Q Consensus 187 kl~~~~~~~~ 196 (423)
.|..+.|+.|
T Consensus 448 ~l~~~~Cp~C 457 (880)
T PRK02224 448 LLEAGKCPEC 457 (880)
T ss_pred HHhcccCCCC
Confidence 3444555443
No 12
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.85 E-value=0.16 Score=57.10 Aligned_cols=46 Identities=15% Similarity=0.261 Sum_probs=31.0
Q ss_pred hhHHHH-HhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHH
Q psy14534 16 KLFLKT-KHHLEKEQHVINHKMKTLQAINEEILQRISHLETSSQTNV 61 (423)
Q Consensus 16 ~~~~~~-~~~le~~~~~~~~~~~~l~~~~~~~~~r~~~~e~~~~~l~ 61 (423)
+.|+++ |+.+++-..++.+..+.|+...++-.++|..++.+...|.
T Consensus 546 ~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~ 592 (717)
T PF10168_consen 546 KVLREEYIEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLR 592 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666 6777777788888777777766666666666666555554
No 13
>PHA02562 46 endonuclease subunit; Provisional
Probab=95.75 E-value=0.72 Score=49.44 Aligned_cols=17 Identities=24% Similarity=0.479 Sum_probs=7.3
Q ss_pred cchhHHHHHHhhhhhhh
Q psy14534 98 NLPTIQREISKLEFGVA 114 (423)
Q Consensus 98 ~ip~~~~EI~e~e~~l~ 114 (423)
++.+++.++++++..+.
T Consensus 307 ~i~~l~~~l~~l~~~i~ 323 (562)
T PHA02562 307 KLKELQHSLEKLDTAID 323 (562)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444444
No 14
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=95.69 E-value=0.82 Score=50.73 Aligned_cols=130 Identities=16% Similarity=0.176 Sum_probs=80.2
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHH-------HHHHHHhhhhhhhhhHHHHHHhhccccccc-------hhhhhhhhHHHH
Q psy14534 19 LKTKHHLEKEQHVINHKMKTLQAI-------NEEILQRISHLETSSQTNVKTLFNITKQIS-------GVEHLHSSMMEL 84 (423)
Q Consensus 19 ~~~~~~le~~~~~~~~~~~~l~~~-------~~~~~~r~~~~e~~~~~l~~~~~n~s~q~~-------~~~k~~~s~~el 84 (423)
.+++.+|.+..+.+..++...-++ ..+..+||..||...+++.....+..+-++ +.-+--.+=.+|
T Consensus 86 q~E~~~L~kElE~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~eL 165 (617)
T PF15070_consen 86 QAEAEHLRKELESLEEQLQAQVENNEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQNREL 165 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhHHHH
Confidence 344555555555555444332222 234567888888777777766555433332 223333444588
Q ss_pred HHHHHHHHHHhhhcchhH----HHHHHhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhhHHHHHHHH
Q psy14534 85 LESIETIENKVDYNLPTI----QREISKLEFGVAQINSTLQVVNETRESDANYLKSTVSTLATLQEKVE 149 (423)
Q Consensus 85 ~e~ve~~~~~~d~~ip~~----~~EI~e~e~~l~q~ts~l~~~~Ee~~n~s~~i~s~~~sis~lqek~~ 149 (423)
-+.+.-++++| ..+..= ++-+--+..-.+..+.+|..+.+++++++..|.+|...+..|++..+
T Consensus 166 K~QL~Elq~~F-v~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~q~d 233 (617)
T PF15070_consen 166 KEQLAELQDAF-VKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLKEKLELKSQEAQSLQEQRD 233 (617)
T ss_pred HHHHHHHHHHH-HHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 88888888887 222222 33333334444578888888999999999999999988888877654
No 15
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=95.65 E-value=0.83 Score=54.02 Aligned_cols=35 Identities=17% Similarity=0.173 Sum_probs=13.9
Q ss_pred HhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhh
Q psy14534 107 SKLEFGVAQINSTLQVVNETRESDANYLKSTVSTL 141 (423)
Q Consensus 107 ~e~e~~l~q~ts~l~~~~Ee~~n~s~~i~s~~~si 141 (423)
...+.++..+.+++...+.++..+..++++....+
T Consensus 379 ~~~~~~~~~~~~~~~~~~~~l~~l~~~i~~l~~~~ 413 (1163)
T COG1196 379 EALREELAELEAELAEIRNELEELKREIESLEERL 413 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333334444444444444433333
No 16
>KOG0161|consensus
Probab=95.59 E-value=0.88 Score=56.10 Aligned_cols=45 Identities=11% Similarity=0.163 Sum_probs=19.7
Q ss_pred cccchhhhhhhhHHHHHHHHHHHHHHhhhcchhHHHHHHhhhhhh
Q psy14534 69 KQISGVEHLHSSMMELLESIETIENKVDYNLPTIQREISKLEFGV 113 (423)
Q Consensus 69 ~q~~~~~k~~~s~~el~e~ve~~~~~~d~~ip~~~~EI~e~e~~l 113 (423)
..+..+.++.......+++++..-++-.+..-++-+.+.+++-++
T Consensus 1006 ek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el 1050 (1930)
T KOG0161|consen 1006 EKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGEL 1050 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555544444433333333333333433333
No 17
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=95.58 E-value=0.98 Score=53.44 Aligned_cols=17 Identities=12% Similarity=0.343 Sum_probs=9.7
Q ss_pred cccccChHhhccccCCC
Q psy14534 268 QEFNLKWTDYAQGFGSP 284 (423)
Q Consensus 268 v~FnR~W~eY~~GFG~~ 284 (423)
.-|..+|......|..+
T Consensus 1009 ~~f~~~f~~In~~F~~i 1025 (1163)
T COG1196 1009 ERFKETFDKINENFSEI 1025 (1163)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34666666666655543
No 18
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.45 E-value=0.55 Score=56.14 Aligned_cols=71 Identities=7% Similarity=0.173 Sum_probs=45.5
Q ss_pred cccccchhhhhhhhHHHHHHHHHHHHHHhh-----hcchhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhHHHHHHH
Q psy14534 67 ITKQISGVEHLHSSMMELLESIETIENKVD-----YNLPTIQREISKLEFGVAQINSTLQVVNETRESDANYLKST 137 (423)
Q Consensus 67 ~s~q~~~~~k~~~s~~el~e~ve~~~~~~d-----~~ip~~~~EI~e~e~~l~q~ts~l~~~~Ee~~n~s~~i~s~ 137 (423)
+...++.++++...+.++-..|+.++.++. .++.++..||..++..+..+.+.+..+.++...+..+|+..
T Consensus 787 L~~~v~~i~r~~~ei~~l~~qie~l~~~l~~~~~~~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~L 862 (1311)
T TIGR00606 787 CLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHL 862 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666777777777777777777776554 34556788888888877777555544444444444444444
No 19
>PRK09039 hypothetical protein; Validated
Probab=95.27 E-value=0.83 Score=47.08 Aligned_cols=120 Identities=9% Similarity=0.112 Sum_probs=60.0
Q ss_pred hhhHHHHHhhHHHHHHHHHHHHHHHHHH-------HHHHHHhhhhhhhhhHHHHHHhhccccccchhhhhhhhHHHHHHH
Q psy14534 15 GKLFLKTKHHLEKEQHVINHKMKTLQAI-------NEEILQRISHLETSSQTNVKTLFNITKQISGVEHLHSSMMELLES 87 (423)
Q Consensus 15 ~~~~~~~~~~le~~~~~~~~~~~~l~~~-------~~~~~~r~~~~e~~~~~l~~~~~n~s~q~~~~~k~~~s~~el~e~ 87 (423)
|=||.++|..++.+...+..+++.|=-. ...++++|..+..+...+...-.-+..+++. ..+.
T Consensus 41 q~fLs~~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~----------~~~~ 110 (343)
T PRK09039 41 QFFLSREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAE----------LAGA 110 (343)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh----------hhhh
Confidence 4577888888888877777776654211 1233444444444333222222211111110 0000
Q ss_pred HHHHHHHhhhcchhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhhHHHHHHH
Q psy14534 88 IETIENKVDYNLPTIQREISKLEFGVAQINSTLQVVNETRESDANYLKSTVSTLATLQEKV 148 (423)
Q Consensus 88 ve~~~~~~d~~ip~~~~EI~e~e~~l~q~ts~l~~~~Ee~~n~s~~i~s~~~sis~lqek~ 148 (423)
. ......+..+..++..+..........+..+|.+|..++.++.++-..|..++++.
T Consensus 111 ~----~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~ 167 (343)
T PRK09039 111 G----AAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRD 167 (343)
T ss_pred c----chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 01112233345556666666666666666777777777777666666665555544
No 20
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=95.19 E-value=2.2 Score=46.62 Aligned_cols=56 Identities=14% Similarity=0.232 Sum_probs=34.4
Q ss_pred hhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhcccccc
Q psy14534 16 KLFLKTKHHLEKEQHVINHKMKTLQAINEEILQRISHLETSSQTNVKTLFNITKQI 71 (423)
Q Consensus 16 ~~~~~~~~~le~~~~~~~~~~~~l~~~~~~~~~r~~~~e~~~~~l~~~~~n~s~q~ 71 (423)
-++..++...++....|.+....|++..+.+.++|..|+.++....++..-+..+.
T Consensus 139 ~~lQ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~ 194 (546)
T PF07888_consen 139 QLLQNQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQ 194 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666666666666666666666666666655555554444333
No 21
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=94.98 E-value=2.8 Score=40.78 Aligned_cols=130 Identities=18% Similarity=0.195 Sum_probs=66.3
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhcccccc-----------chhhhhhhhHHHHHH
Q psy14534 18 FLKTKHHLEKEQHVINHKMKTLQAINEEILQRISHLETSSQTNVKTLFNITKQI-----------SGVEHLHSSMMELLE 86 (423)
Q Consensus 18 ~~~~~~~le~~~~~~~~~~~~l~~~~~~~~~r~~~~e~~~~~l~~~~~n~s~q~-----------~~~~k~~~s~~el~e 86 (423)
..+.....|-....|.+++..|+...+...+|+......+..+.++.--+.+.+ ..++.|..++-+.-.
T Consensus 27 ~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE~r~~~~eeri~~lE~~l~ea~~ 106 (237)
T PF00261_consen 27 AEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVLENREQSDEERIEELEQQLKEAKR 106 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777777777777777766555444444333222222221111111111 123333333333333
Q ss_pred HHHHHHHHhh---hcchhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhhHHHHHH
Q psy14534 87 SIETIENKVD---YNLPTIQREISKLEFGVAQINSTLQVVNETRESDANYLKSTVSTLATLQEK 147 (423)
Q Consensus 87 ~ve~~~~~~d---~~ip~~~~EI~e~e~~l~q~ts~l~~~~Ee~~n~s~~i~s~~~sis~lqek 147 (423)
..+..+.+++ .-+..+..++...+.-+...-+.+..+.++++.+...++++-.+.....++
T Consensus 107 ~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~r 170 (237)
T PF00261_consen 107 RAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASER 170 (237)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHH
Confidence 3333333332 334555666666666666777777777777777777777665554434333
No 22
>PRK03918 chromosome segregation protein; Provisional
Probab=94.96 E-value=1.4 Score=49.89 Aligned_cols=10 Identities=10% Similarity=0.209 Sum_probs=5.9
Q ss_pred CCCCCcccCC
Q psy14534 354 NMKFSTIDRD 363 (423)
Q Consensus 354 g~~FST~DrD 363 (423)
.-||+..|..
T Consensus 819 DEp~~~lD~~ 828 (880)
T PRK03918 819 DEPTPFLDEE 828 (880)
T ss_pred eCCCcccCHH
Confidence 4566666654
No 23
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=94.87 E-value=2.3 Score=43.27 Aligned_cols=107 Identities=12% Similarity=0.197 Sum_probs=54.1
Q ss_pred HHHHHHHhhhhhhhhhHHHHHHhhccccccchhhhhhhhHHHHHHHHHHHHHHhhhc----chhHHHHHHhhhhhhhhhh
Q psy14534 42 INEEILQRISHLETSSQTNVKTLFNITKQISGVEHLHSSMMELLESIETIENKVDYN----LPTIQREISKLEFGVAQIN 117 (423)
Q Consensus 42 ~~~~~~~r~~~~e~~~~~l~~~~~n~s~q~~~~~k~~~s~~el~e~ve~~~~~~d~~----ip~~~~EI~e~e~~l~q~t 117 (423)
..+.+.+++..|..+...|.+.+..+..-+..+...|.++.+=+..+.......+.+ +-.++.||++.+..++..-
T Consensus 150 l~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k 229 (325)
T PF08317_consen 150 LKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKK 229 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777777777777777666666555555556665554444443333322211 2233444444444444444
Q ss_pred hhhhhhhhhhhhhHHHHHHHHhhhHHHHHHH
Q psy14534 118 STLQVVNETRESDANYLKSTVSTLATLQEKV 148 (423)
Q Consensus 118 s~l~~~~Ee~~n~s~~i~s~~~sis~lqek~ 148 (423)
..+..+++++..+...|.++.+..+.++..+
T Consensus 230 ~~l~el~~el~~l~~~i~~~~~~k~~l~~eI 260 (325)
T PF08317_consen 230 KELAELQEELEELEEKIEELEEQKQELLAEI 260 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444443
No 24
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=94.85 E-value=0.93 Score=46.16 Aligned_cols=29 Identities=14% Similarity=0.093 Sum_probs=11.8
Q ss_pred HHHhhhhhhhhhHHHHHHhhccccccchh
Q psy14534 46 ILQRISHLETSSQTNVKTLFNITKQISGV 74 (423)
Q Consensus 46 ~~~r~~~~e~~~~~l~~~~~n~s~q~~~~ 74 (423)
++.-...|+.....|.....-+...+..+
T Consensus 147 l~gl~~~L~~~~~~L~~D~~~L~~~~~~l 175 (325)
T PF08317_consen 147 LEGLKEGLEENLELLQEDYAKLDKQLEQL 175 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444333333
No 25
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=94.83 E-value=1.9 Score=44.04 Aligned_cols=32 Identities=6% Similarity=0.010 Sum_probs=14.0
Q ss_pred HHHhhhhhhhhhHHHHHHhhccccccchhhhh
Q psy14534 46 ILQRISHLETSSQTNVKTLFNITKQISGVEHL 77 (423)
Q Consensus 46 ~~~r~~~~e~~~~~l~~~~~n~s~q~~~~~k~ 77 (423)
+..-...|+.....|...-.-+.+++.-++.+
T Consensus 142 legLk~~L~~~~~~l~~D~~~L~~~~~~l~~~ 173 (312)
T smart00787 142 LEGLKEGLDENLEGLKEDYKLLMKELELLNSI 173 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444433
No 26
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=94.66 E-value=0.67 Score=50.68 Aligned_cols=52 Identities=17% Similarity=0.243 Sum_probs=24.0
Q ss_pred HHHHhhccccccchhhhhhhhHHHHHHHHHHHHHHhhhcchhHHHHHHhhhh
Q psy14534 60 NVKTLFNITKQISGVEHLHSSMMELLESIETIENKVDYNLPTIQREISKLEF 111 (423)
Q Consensus 60 l~~~~~n~s~q~~~~~k~~~s~~el~e~ve~~~~~~d~~ip~~~~EI~e~e~ 111 (423)
+..+.--+..++..+.+-+..+.+.+++++.-|..+...+..++..+++...
T Consensus 381 l~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr 432 (569)
T PRK04778 381 LQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKR 432 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444444455555554444445555544444443
No 27
>KOG0161|consensus
Probab=94.63 E-value=2.6 Score=52.20 Aligned_cols=59 Identities=20% Similarity=0.246 Sum_probs=46.7
Q ss_pred hhhcchhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhhHHHHHHHHHHHH
Q psy14534 95 VDYNLPTIQREISKLEFGVAQINSTLQVVNETRESDANYLKSTVSTLATLQEKVEANNI 153 (423)
Q Consensus 95 ~d~~ip~~~~EI~e~e~~l~q~ts~l~~~~Ee~~n~s~~i~s~~~sis~lqek~~~~~k 153 (423)
.|..+..+.+|=+.+|+.++++++.++...|+.+.+.+.....-..++.++...+-+++
T Consensus 976 ~~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~ 1034 (1930)
T KOG0161|consen 976 LDENISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKR 1034 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777888888999999999999999999999988877777777777666654444
No 28
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.55 E-value=2.7 Score=50.43 Aligned_cols=72 Identities=13% Similarity=0.256 Sum_probs=31.2
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhccccccchhhhhhhhHHHHHHHHHH
Q psy14534 19 LKTKHHLEKEQHVINHKMKTLQAINEEILQRISHLETSSQTNVKTLFNITKQISGVEHLHSSMMELLESIET 90 (423)
Q Consensus 19 ~~~~~~le~~~~~~~~~~~~l~~~~~~~~~r~~~~e~~~~~l~~~~~n~s~q~~~~~k~~~s~~el~e~ve~ 90 (423)
.++|..++.+...+...+..++...+.+.+.|+.|......+.+....++.++.....+...+.+|-+.++.
T Consensus 828 e~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~~l~~r~~le~~L~el~~el~~ 899 (1311)
T TIGR00606 828 NQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQS 899 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444443333334444444444555554444444444444444444444444444444433333
No 29
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=94.46 E-value=2.6 Score=41.62 Aligned_cols=44 Identities=16% Similarity=0.143 Sum_probs=29.3
Q ss_pred chhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhhH
Q psy14534 99 LPTIQREISKLEFGVAQINSTLQVVNETRESDANYLKSTVSTLA 142 (423)
Q Consensus 99 ip~~~~EI~e~e~~l~q~ts~l~~~~Ee~~n~s~~i~s~~~sis 142 (423)
+..+..||...+...+.+..++.-+.++++.++.++.+..+.+.
T Consensus 91 ~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~ 134 (239)
T COG1579 91 LRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLE 134 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666667777777777777777777776666666663
No 30
>PRK02224 chromosome segregation protein; Provisional
Probab=94.44 E-value=3.6 Score=46.85 Aligned_cols=7 Identities=14% Similarity=-0.021 Sum_probs=2.9
Q ss_pred CCCCccc
Q psy14534 355 MKFSTID 361 (423)
Q Consensus 355 ~~FST~D 361 (423)
-||+..|
T Consensus 819 Ep~~~lD 825 (880)
T PRK02224 819 EPTVFLD 825 (880)
T ss_pred CCcccCC
Confidence 3444444
No 31
>KOG1029|consensus
Probab=94.29 E-value=2 Score=48.52 Aligned_cols=38 Identities=13% Similarity=0.171 Sum_probs=28.8
Q ss_pred hcchhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhHHHH
Q psy14534 97 YNLPTIQREISKLEFGVAQINSTLQVVNETRESDANYL 134 (423)
Q Consensus 97 ~~ip~~~~EI~e~e~~l~q~ts~l~~~~Ee~~n~s~~i 134 (423)
-.+.+++.+|+|....|.+++-+-+.+++.+++.....
T Consensus 486 sei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~a~ 523 (1118)
T KOG1029|consen 486 SEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQSAH 523 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhc
Confidence 44566788888888888888888888888887655433
No 32
>KOG0250|consensus
Probab=94.21 E-value=2.2 Score=49.71 Aligned_cols=50 Identities=16% Similarity=0.181 Sum_probs=28.6
Q ss_pred cchhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHH
Q psy14534 13 RNGKLFLKTKHHLEKEQHVINHKMKTLQAINEEILQRISHLETSSQTNVK 62 (423)
Q Consensus 13 r~~~~~~~~~~~le~~~~~~~~~~~~l~~~~~~~~~r~~~~e~~~~~l~~ 62 (423)
+=+.-+-.+|..|+.....+.+++.+++-+.-+....|+.++...++|..
T Consensus 654 ~~~~s~d~~ie~le~e~~~l~~~~~~l~~~~~~~e~~l~e~~~~~~~l~~ 703 (1074)
T KOG0250|consen 654 VDEFSFDDEIEDLEREASRLQKEILELENQRREAEKNLEELEKKLRELSE 703 (1074)
T ss_pred ccchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777888887777777666555544333333444444444444433
No 33
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.12 E-value=0.47 Score=53.44 Aligned_cols=21 Identities=5% Similarity=0.137 Sum_probs=13.6
Q ss_pred HHhhHHHHHHHHHHHHHHHHH
Q psy14534 157 ALSDANYLKSTVSTLATLQEK 177 (423)
Q Consensus 157 le~Q~~~I~~l~~~v~~~~~q 177 (423)
|.++-..|++++..|....++
T Consensus 694 L~~~~~~I~~~v~~ik~i~~~ 714 (717)
T PF10168_consen 694 LKQQGEEIDELVKQIKNIKKI 714 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 456667777777666665554
No 34
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=94.11 E-value=3.2 Score=44.04 Aligned_cols=43 Identities=14% Similarity=0.139 Sum_probs=26.9
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHH
Q psy14534 18 FLKTKHHLEKEQHVINHKMKTLQAINEEILQRISHLETSSQTN 60 (423)
Q Consensus 18 ~~~~~~~le~~~~~~~~~~~~l~~~~~~~~~r~~~~e~~~~~l 60 (423)
|.++|+++|..+..+.+++.+.+.....+..+|..++.....|
T Consensus 64 L~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l 106 (420)
T COG4942 64 LEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNAL 106 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHH
Confidence 6778888888888888887655554444444444444443333
No 35
>PRK01156 chromosome segregation protein; Provisional
Probab=94.07 E-value=5 Score=45.93 Aligned_cols=7 Identities=29% Similarity=0.165 Sum_probs=3.2
Q ss_pred cCCcccc
Q psy14534 375 YEGGWWF 381 (423)
Q Consensus 375 ~~GGWWy 381 (423)
++||++.
T Consensus 802 lS~G~~~ 808 (895)
T PRK01156 802 LSGGEKT 808 (895)
T ss_pred CCHhHHH
Confidence 3455543
No 36
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=94.04 E-value=2.5 Score=38.40 Aligned_cols=88 Identities=17% Similarity=0.174 Sum_probs=49.5
Q ss_pred HHHHHHHhhhhhhhhhHHHHHHhhccccccchhhhhhhhHHHHHHHHHHHHHHhhhcchhHHHHHHhhhhhhhhhhhhhh
Q psy14534 42 INEEILQRISHLETSSQTNVKTLFNITKQISGVEHLHSSMMELLESIETIENKVDYNLPTIQREISKLEFGVAQINSTLQ 121 (423)
Q Consensus 42 ~~~~~~~r~~~~e~~~~~l~~~~~n~s~q~~~~~k~~~s~~el~e~ve~~~~~~d~~ip~~~~EI~e~e~~l~q~ts~l~ 121 (423)
.+..+.+|...+|.+..-|...+..+-.+ ++++...+-++-+.++.-+..+ .+.-.+++-|.-+|++|.+.-..|.
T Consensus 22 ~~K~le~~~~~~E~EI~sL~~K~~~lE~e---ld~~~~~l~~~k~~lee~~~~~-~~~E~l~rriq~LEeele~ae~~L~ 97 (143)
T PF12718_consen 22 KVKQLEQENEQKEQEITSLQKKNQQLEEE---LDKLEEQLKEAKEKLEESEKRK-SNAEQLNRRIQLLEEELEEAEKKLK 97 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhHHHHH-HhHHHHHhhHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444333 3555566666666666555554 3444677777777777777777777
Q ss_pred hhhhhhhhhHHH
Q psy14534 122 VVNETRESDANY 133 (423)
Q Consensus 122 ~~~Ee~~n~s~~ 133 (423)
...+.+..+...
T Consensus 98 e~~ekl~e~d~~ 109 (143)
T PF12718_consen 98 ETTEKLREADVK 109 (143)
T ss_pred HHHHHHHHHHHH
Confidence 766666554443
No 37
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=93.90 E-value=6.1 Score=43.32 Aligned_cols=23 Identities=17% Similarity=0.141 Sum_probs=11.8
Q ss_pred hhhHHHHHHHHhhhHHHHHHHHH
Q psy14534 128 ESDANYLKSTVSTLATLQEKVEA 150 (423)
Q Consensus 128 ~n~s~~i~s~~~sis~lqek~~~ 150 (423)
.....++..+.+.+..+|++++.
T Consensus 279 ~~~~~e~e~LkeqLr~~qe~lqa 301 (546)
T PF07888_consen 279 QQLQQENEALKEQLRSAQEQLQA 301 (546)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555555554
No 38
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=93.82 E-value=11 Score=40.18 Aligned_cols=101 Identities=15% Similarity=0.261 Sum_probs=55.0
Q ss_pred hhhHHHHHhhHHHHHHHHHHHHHHHHHHH--------HHHHHhhhhhhhhhHHH-------HHHhhccccccc-------
Q psy14534 15 GKLFLKTKHHLEKEQHVINHKMKTLQAIN--------EEILQRISHLETSSQTN-------VKTLFNITKQIS------- 72 (423)
Q Consensus 15 ~~~~~~~~~~le~~~~~~~~~~~~l~~~~--------~~~~~r~~~~e~~~~~l-------~~~~~n~s~q~~------- 72 (423)
..|+.+|+.+++.+......++...+... ..+.+++..++.+...+ ...+..+..+++
T Consensus 163 ~~fl~~ql~~~~~~L~~ae~~l~~f~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~l~~~~a~~~~l~~~l~~~~~~~~ 242 (498)
T TIGR03007 163 QRFIDEQIKTYEKKLEAAENRLKAFKQENGGILPDQEGDYYSEISEAQEELEAARLELNEAIAQRDALKRQLGGEEPVLL 242 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcC
Confidence 36888888888888887777776664311 11333444443333322 222223333222
Q ss_pred -----hhhhhhhhHHHHHHHHHHHHHHhhhcchhH---HHHHHhhhhhhhh
Q psy14534 73 -----GVEHLHSSMMELLESIETIENKVDYNLPTI---QREISKLEFGVAQ 115 (423)
Q Consensus 73 -----~~~k~~~s~~el~e~ve~~~~~~d~~ip~~---~~EI~e~e~~l~q 115 (423)
..+.+..++.+|-..+..+...+-..-|.+ +.+|..++..+++
T Consensus 243 ~~~~~~~~~l~~~l~~l~~~l~~l~~~y~~~hP~v~~l~~qi~~l~~~l~~ 293 (498)
T TIGR03007 243 AGSSVANSELDGRIEALEKQLDALRLRYTDKHPDVIATKREIAQLEEQKEE 293 (498)
T ss_pred cccccCCCchHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHh
Confidence 133445556666666666766666666666 5566666655544
No 39
>PRK04863 mukB cell division protein MukB; Provisional
Probab=93.82 E-value=5.8 Score=48.42 Aligned_cols=43 Identities=12% Similarity=0.059 Sum_probs=26.8
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHH
Q psy14534 20 KTKHHLEKEQHVINHKMKTLQAINEEILQRISHLETSSQTNVK 62 (423)
Q Consensus 20 ~~~~~le~~~~~~~~~~~~l~~~~~~~~~r~~~~e~~~~~l~~ 62 (423)
+++...+++.......+.++..++.++..+++.|+.+.....+
T Consensus 293 ~rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~k 335 (1486)
T PRK04863 293 RELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASD 335 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555666666667777777777777555543
No 40
>KOG0250|consensus
Probab=93.79 E-value=2.8 Score=48.86 Aligned_cols=69 Identities=13% Similarity=0.197 Sum_probs=35.8
Q ss_pred HHHHHhhhhhhhhhhhhhhhhhhhhhhhHHHH-HHHHhhhHHHHHHHHH-HHHHHHHHhhHHHHHHHHHHH
Q psy14534 103 QREISKLEFGVAQINSTLQVVNETRESDANYL-KSTVSTLATLQEKVEA-NNIIMQALSDANYLKSTVSTL 171 (423)
Q Consensus 103 ~~EI~e~e~~l~q~ts~l~~~~Ee~~n~s~~i-~s~~~sis~lqek~~~-~~kv~~le~Q~~~I~~l~~~v 171 (423)
+.+|.+.+-..++.......++..|.++..+. +++...++..+.+++. +..|+.+++|..+|++-.+.|
T Consensus 357 ~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~ 427 (1074)
T KOG0250|consen 357 KEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEV 427 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444455555555555565555555 4444555555555542 444555555555555544443
No 41
>KOG0964|consensus
Probab=93.76 E-value=4.4 Score=46.93 Aligned_cols=130 Identities=15% Similarity=0.170 Sum_probs=81.6
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhccc--c--ccchhhhhhhhHHHHHHHHHHHHHHh
Q psy14534 20 KTKHHLEKEQHVINHKMKTLQAINEEILQRISHLETSSQTNVKTLFNIT--K--QISGVEHLHSSMMELLESIETIENKV 95 (423)
Q Consensus 20 ~~~~~le~~~~~~~~~~~~l~~~~~~~~~r~~~~e~~~~~l~~~~~n~s--~--q~~~~~k~~~s~~el~e~ve~~~~~~ 95 (423)
.+|..||.+...|.....+++...-.+.+..-.||+...-|+.+|..-. + -+..+.++...|-+..+.++.|++++
T Consensus 272 ~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~~n~q~r~~~l~~l~~~~~ki~e~~~EL~~I~Pky 351 (1200)
T KOG0964|consen 272 CEIKELENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQITGNEQQRNLALHVLQKVKDKIEEKKDELSKIEPKY 351 (1200)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 3444455554444444444444444455555667777777776655433 2 23377778888888888888888888
Q ss_pred hhcchhH---HHHHHhhhhhhhhhhhhh-------------hhhhhhhhhhHHHHHHHHhhhHHHHHHHH
Q psy14534 96 DYNLPTI---QREISKLEFGVAQINSTL-------------QVVNETRESDANYLKSTVSTLATLQEKVE 149 (423)
Q Consensus 96 d~~ip~~---~~EI~e~e~~l~q~ts~l-------------~~~~Ee~~n~s~~i~s~~~sis~lqek~~ 149 (423)
.....+= +.-|.+++.....+.++. .+++-|+..++..|++..+..+.||..+.
T Consensus 352 ~~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~sqFssk~eRDkwir~ei~~l~~~i~~~ke~e~~lq~e~~ 421 (1200)
T KOG0964|consen 352 NSLVDEEKRLKKRLAKLEQKQRDLLAKQGRYSQFSSKEERDKWIRSEIEKLKRGINDTKEQENILQKEIE 421 (1200)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 6555443 333444444433333222 78999999999999999998888887765
No 42
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=93.54 E-value=3.4 Score=40.19 Aligned_cols=30 Identities=20% Similarity=0.262 Sum_probs=13.8
Q ss_pred HHHHHhhhhhhhhhHHHHHHhhccccccch
Q psy14534 44 EEILQRISHLETSSQTNVKTLFNITKQISG 73 (423)
Q Consensus 44 ~~~~~r~~~~e~~~~~l~~~~~n~s~q~~~ 73 (423)
..+..||..||..+...-..+..++..+..
T Consensus 39 ~~l~rri~~lE~~le~~eerL~~~~~kL~~ 68 (237)
T PF00261_consen 39 ASLQRRIQLLEEELERAEERLEEATEKLEE 68 (237)
T ss_dssp HHHHHHHHHHHCCCHHHHCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 344445555555544444444444444433
No 43
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=93.43 E-value=5.8 Score=44.01 Aligned_cols=31 Identities=13% Similarity=0.237 Sum_probs=14.3
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14534 18 FLKTKHHLEKEQHVINHKMKTLQAINEEILQ 48 (423)
Q Consensus 18 ~~~~~~~le~~~~~~~~~~~~l~~~~~~~~~ 48 (423)
+.++|..|+..+..+..+++.++..+..+.+
T Consensus 333 l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~ 363 (594)
T PF05667_consen 333 LQEQLDELESQIEELEAEIKMLKSSLKQLEE 363 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555444443333333
No 44
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=93.39 E-value=3.7 Score=40.53 Aligned_cols=9 Identities=22% Similarity=0.375 Sum_probs=5.1
Q ss_pred CCCcccccC
Q psy14534 246 LGRSVLCDE 254 (423)
Q Consensus 246 p~~~v~Cd~ 254 (423)
+..-|+|.-
T Consensus 218 ~d~iv~CP~ 226 (239)
T COG1579 218 KDEIVFCPY 226 (239)
T ss_pred CCCCccCCc
Confidence 333468874
No 45
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=93.37 E-value=4.3 Score=44.44 Aligned_cols=103 Identities=15% Similarity=0.182 Sum_probs=57.8
Q ss_pred HHHhhhhhhhhhHHHHHHhhccc--cccchhhhhhhhHHHHHHHHHHHH---HHhhhcchhHHHHHHhhhhhhhhhhhhh
Q psy14534 46 ILQRISHLETSSQTNVKTLFNIT--KQISGVEHLHSSMMELLESIETIE---NKVDYNLPTIQREISKLEFGVAQINSTL 120 (423)
Q Consensus 46 ~~~r~~~~e~~~~~l~~~~~n~s--~q~~~~~k~~~s~~el~e~ve~~~---~~~d~~ip~~~~EI~e~e~~l~q~ts~l 120 (423)
++.+|..+..........+.++. ..-+.++++...+-.|++.++.=. ..++++.|.+..-+...+.....+..++
T Consensus 254 i~~~i~~l~~~i~~~~~~l~~l~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei 333 (569)
T PRK04778 254 IEKEIQDLKEQIDENLALLEELDLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEI 333 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444432 222355666666666666655443 3456777777777777777777777777
Q ss_pred hhhhhh----------hhhhHHHHHHHHhhhHHHHHHH
Q psy14534 121 QVVNET----------RESDANYLKSTVSTLATLQEKV 148 (423)
Q Consensus 121 ~~~~Ee----------~~n~s~~i~s~~~sis~lqek~ 148 (423)
.-+++. ++.+..+++.+...+..+++.+
T Consensus 334 ~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i 371 (569)
T PRK04778 334 DRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERI 371 (569)
T ss_pred HHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666665 5555555555555544444333
No 46
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=93.16 E-value=2.8 Score=42.85 Aligned_cols=117 Identities=13% Similarity=0.185 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHhhhhhhhhhHHHHHHhhccccccchhhhhhhhHHHHHHHHHHHHHHhhh----cchhHHHHHHhhhhh
Q psy14534 37 KTLQAINEEILQRISHLETSSQTNVKTLFNITKQISGVEHLHSSMMELLESIETIENKVDY----NLPTIQREISKLEFG 112 (423)
Q Consensus 37 ~~l~~~~~~~~~r~~~~e~~~~~l~~~~~n~s~q~~~~~k~~~s~~el~e~ve~~~~~~d~----~ip~~~~EI~e~e~~ 112 (423)
+-++-..+.+++-+..+..+...|.+.+.-+..=+-.+-+.|..+..=+..+......++. -+..++.+|++...+
T Consensus 140 kllegLk~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~e 219 (312)
T smart00787 140 KLLEGLKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQE 219 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 3343344455555555555555555444433332223333333333222222222222222 244556777777777
Q ss_pred hhhhhhhhhhhhhhhhhhHHHHHHHHhhhHHHHHHHHHHHH
Q psy14534 113 VAQINSTLQVVNETRESDANYLKSTVSTLATLQEKVEANNI 153 (423)
Q Consensus 113 l~q~ts~l~~~~Ee~~n~s~~i~s~~~sis~lqek~~~~~k 153 (423)
+...-..+..+++++..+...|.+..+..+.+++.+..-.+
T Consensus 220 i~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~ 260 (312)
T smart00787 220 IMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEK 260 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777777777777666666654333
No 47
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=93.10 E-value=5.3 Score=36.39 Aligned_cols=48 Identities=17% Similarity=0.279 Sum_probs=30.5
Q ss_pred hhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhhHHHHHH
Q psy14534 100 PTIQREISKLEFGVAQINSTLQVVNETRESDANYLKSTVSTLATLQEK 147 (423)
Q Consensus 100 p~~~~EI~e~e~~l~q~ts~l~~~~Ee~~n~s~~i~s~~~sis~lqek 147 (423)
..++.+|..+-.++.+....|..++.|-.++.+.+.-|-+.|+.|+..
T Consensus 55 e~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~ 102 (140)
T PF10473_consen 55 ETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESL 102 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666667777777777776666666666555443
No 48
>KOG0995|consensus
Probab=92.55 E-value=8.8 Score=42.15 Aligned_cols=51 Identities=12% Similarity=0.236 Sum_probs=33.7
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHhhhcchhHHHHHHhhhhhhhhhhhhhhhhhhhh
Q psy14534 73 GVEHLHSSMMELLESIETIENKVDYNLPTIQREISKLEFGVAQINSTLQVVNETR 127 (423)
Q Consensus 73 ~~~k~~~s~~el~e~ve~~~~~~d~~ip~~~~EI~e~e~~l~q~ts~l~~~~Ee~ 127 (423)
+.+|....|.++.......+.++ ..++.||++.|+++..+-+.-..++-.|
T Consensus 274 D~nK~~~y~~~~~~k~~~~~~~l----~~l~~Eie~kEeE~e~lq~~~d~Lk~~I 324 (581)
T KOG0995|consen 274 DVNKFQAYVSQMKSKKQHMEKKL----EMLKSEIEEKEEEIEKLQKENDELKKQI 324 (581)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666777777666665555544 7889999999988876655554444333
No 49
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.48 E-value=4.6 Score=40.45 Aligned_cols=65 Identities=22% Similarity=0.378 Sum_probs=38.9
Q ss_pred hhhhhhhhHHHHHHhhccccccchhhhhhhhHHHHHHHHHHHHHHhhhc---chhHHHHHHhhhhhhhhhh
Q psy14534 50 ISHLETSSQTNVKTLFNITKQISGVEHLHSSMMELLESIETIENKVDYN---LPTIQREISKLEFGVAQIN 117 (423)
Q Consensus 50 ~~~~e~~~~~l~~~~~n~s~q~~~~~k~~~s~~el~e~ve~~~~~~d~~---ip~~~~EI~e~e~~l~q~t 117 (423)
+..-+.++..+.++.-|+..+| +.|..++.++...+..++.++|+. |..++.||+++++.++...
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei---~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~ 100 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEI---ESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQ 100 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556666666666766666 445567777777777777777543 2333455555555554433
No 50
>KOG4643|consensus
Probab=92.29 E-value=10 Score=44.29 Aligned_cols=124 Identities=12% Similarity=0.216 Sum_probs=68.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhccccccchh--------------hhhhhhHHHHHHHH
Q psy14534 23 HHLEKEQHVINHKMKTLQAINEEILQRISHLETSSQTNVKTLFNITKQISGV--------------EHLHSSMMELLESI 88 (423)
Q Consensus 23 ~~le~~~~~~~~~~~~l~~~~~~~~~r~~~~e~~~~~l~~~~~n~s~q~~~~--------------~k~~~s~~el~e~v 88 (423)
+.|+++.+.|.+..+++-+..-++.++-+.|-.++..|..++-|+.+-++.- +-+-+.+.++...+
T Consensus 411 KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~~rq~~e~e~~~q~ls~~~Q~~~et~el~~~i 490 (1195)
T KOG4643|consen 411 KNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTRSLSRQSLENEELDQLLSLQDQLEAETEELLNQI 490 (1195)
T ss_pred HhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4477777777777777766666777777888888888888888876555432 11122223333333
Q ss_pred HHHHHHhhhc----------chhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhhHHHHH
Q psy14534 89 ETIENKVDYN----------LPTIQREISKLEFGVAQINSTLQVVNETRESDANYLKSTVSTLATLQE 146 (423)
Q Consensus 89 e~~~~~~d~~----------ip~~~~EI~e~e~~l~q~ts~l~~~~Ee~~n~s~~i~s~~~sis~lqe 146 (423)
..+-...... +..++.-+++..+.+..+..++..+.+++.++..+=......|+.|..
T Consensus 491 knlnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~ 558 (1195)
T KOG4643|consen 491 KNLNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLLKQIQSLKT 558 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 2222222111 122233344444444455555566666666666665555555555544
No 51
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=92.16 E-value=13 Score=38.81 Aligned_cols=39 Identities=13% Similarity=0.221 Sum_probs=21.7
Q ss_pred chhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhHHHHHHH
Q psy14534 99 LPTIQREISKLEFGVAQINSTLQVVNETRESDANYLKST 137 (423)
Q Consensus 99 ip~~~~EI~e~e~~l~q~ts~l~~~~Ee~~n~s~~i~s~ 137 (423)
+.+++.++.+++.+++...........++..+..++.+.
T Consensus 256 i~~l~~~l~~le~~l~~l~~~y~~~hP~v~~l~~~i~~l 294 (444)
T TIGR03017 256 IQNLKTDIARAESKLAELSQRLGPNHPQYKRAQAEINSL 294 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHH
Confidence 445677777777777766655544444444444443333
No 52
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=92.12 E-value=2.5 Score=44.00 Aligned_cols=69 Identities=16% Similarity=0.249 Sum_probs=38.7
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHhhhcchhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhh
Q psy14534 73 GVEHLHSSMMELLESIETIENKVDYNLPTIQREISKLEFGVAQINSTLQVVNETRESDANYLKSTVSTL 141 (423)
Q Consensus 73 ~~~k~~~s~~el~e~ve~~~~~~d~~ip~~~~EI~e~e~~l~q~ts~l~~~~Ee~~n~s~~i~s~~~si 141 (423)
-|+++|..+-.-+|.|++-|.-++..+..+..|-+.....+.......+...+-+..+..+++.+.+.+
T Consensus 242 ~L~kl~~~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeL 310 (359)
T PF10498_consen 242 QLDKLQQDISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEEL 310 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 456677777777777777777777666666655554444444444444444444444444444433333
No 53
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=91.95 E-value=3.9 Score=46.24 Aligned_cols=120 Identities=22% Similarity=0.165 Sum_probs=79.9
Q ss_pred HHHHhhhhhhhhhHHHHHHhhccccccchhhhhhhhHHHHHHHHHHHHHHhhhcchhHH-------------HHHHhhhh
Q psy14534 45 EILQRISHLETSSQTNVKTLFNITKQISGVEHLHSSMMELLESIETIENKVDYNLPTIQ-------------REISKLEF 111 (423)
Q Consensus 45 ~~~~r~~~~e~~~~~l~~~~~n~s~q~~~~~k~~~s~~el~e~ve~~~~~~d~~ip~~~-------------~EI~e~e~ 111 (423)
.+..||..||.+.+.+..++.|+.- ..++|+....+|.++.+.+|-.......+++ .|+.++-+
T Consensus 31 ~~~~~i~~l~~elk~~~~~~~~~~~---e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENi 107 (717)
T PF09730_consen 31 YLQQRILELENELKQLRQELSNVQA---ENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEENI 107 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 5778999999999999999888774 4577777778888888888877755444442 23334444
Q ss_pred hhhhhhhhhhhhhhhhhhhHHHHHHHHhhhHHHHHHHH----HHHHHH-HHHhhHHHHHHH
Q psy14534 112 GVAQINSTLQVVNETRESDANYLKSTVSTLATLQEKVE----ANNIIM-QALSDANYLKST 167 (423)
Q Consensus 112 ~l~q~ts~l~~~~Ee~~n~s~~i~s~~~sis~lqek~~----~~~kv~-~le~Q~~~I~~l 167 (423)
.|-+..|.|+-.+=|-+.++.+|+.+-+.+.-|.-+.+ +.++-+ |+++.++.|+.=
T Consensus 108 slQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~~rLk~iae~qleEALesl~~E 168 (717)
T PF09730_consen 108 SLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEAARLKEIAEKQLEEALESLKSE 168 (717)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777777777777777777777777644443333 333322 455555555444
No 54
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=91.90 E-value=6.3 Score=44.51 Aligned_cols=28 Identities=11% Similarity=0.141 Sum_probs=14.1
Q ss_pred hhhhhhhhhhHHHHHHHHhhhHHHHHHH
Q psy14534 121 QVVNETRESDANYLKSTVSTLATLQEKV 148 (423)
Q Consensus 121 ~~~~Ee~~n~s~~i~s~~~sis~lqek~ 148 (423)
+.+..|++.+..+++++-+.+..++.++
T Consensus 548 ~~lE~E~~~lr~elk~kee~~~~~e~~~ 575 (697)
T PF09726_consen 548 RQLESELKKLRRELKQKEEQIRELESEL 575 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555554444444
No 55
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=91.50 E-value=3.6 Score=37.30 Aligned_cols=106 Identities=15% Similarity=0.212 Sum_probs=57.1
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhccccccchhhhhhhhHHHHHHHHHHHHHHhhh
Q psy14534 18 FLKTKHHLEKEQHVINHKMKTLQAINEEILQRISHLETSSQTNVKTLFNITKQISGVEHLHSSMMELLESIETIENKVDY 97 (423)
Q Consensus 18 ~~~~~~~le~~~~~~~~~~~~l~~~~~~~~~r~~~~e~~~~~l~~~~~n~s~q~~~~~k~~~s~~el~e~ve~~~~~~d~ 97 (423)
+.++++.||-....+..++..|++.+..+...|..++.....+...+-+..... ..++.|..
T Consensus 19 ~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~--------------~~~E~l~r---- 80 (143)
T PF12718_consen 19 LEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRK--------------SNAEQLNR---- 80 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH--------------HhHHHHHh----
Confidence 345555666655566666666666666666666555555555444433332222 22223333
Q ss_pred cchhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhh
Q psy14534 98 NLPTIQREISKLEFGVAQINSTLQVVNETRESDANYLKSTVSTL 141 (423)
Q Consensus 98 ~ip~~~~EI~e~e~~l~q~ts~l~~~~Ee~~n~s~~i~s~~~si 141 (423)
-|..+-.|+...+..|+.++-.|....-....+.+.++++-...
T Consensus 81 riq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~ 124 (143)
T PF12718_consen 81 RIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQER 124 (143)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhH
Confidence 33555666666677777777777655555555555555544443
No 56
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=91.27 E-value=10 Score=41.38 Aligned_cols=33 Identities=15% Similarity=0.154 Sum_probs=16.7
Q ss_pred hhhcchhHHHHHHhhhhhhhhhhhhhhhhhhhh
Q psy14534 95 VDYNLPTIQREISKLEFGVAQINSTLQVVNETR 127 (423)
Q Consensus 95 ~d~~ip~~~~EI~e~e~~l~q~ts~l~~~~Ee~ 127 (423)
+|..+.++...+.....++...+..+....+++
T Consensus 264 ~d~~~~~~~~~l~~~~~~l~d~~~~l~~~~~~l 296 (563)
T TIGR00634 264 IDGSLRELAEQVGNALTEVEEATRELQNYLDEL 296 (563)
T ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 455555555555555555555555554444443
No 57
>KOG1937|consensus
Probab=91.24 E-value=10 Score=40.61 Aligned_cols=73 Identities=16% Similarity=0.167 Sum_probs=45.3
Q ss_pred HHHHhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhhHHHHHHHHHHHH---HHHHHhhHHHHHHHHHHHHHHHHHHH
Q psy14534 104 REISKLEFGVAQINSTLQVVNETRESDANYLKSTVSTLATLQEKVEANNI---IMQALSDANYLKSTVSTLATLQEKVE 179 (423)
Q Consensus 104 ~EI~e~e~~l~q~ts~l~~~~Ee~~n~s~~i~s~~~sis~lqek~~~~~k---v~~le~Q~~~I~~l~~~v~~~~~ql~ 179 (423)
++|.++|..|...+.+..-+-|.-+++..++....-.++ .+.=.+++ +..+..|...|.+.+..-++++++++
T Consensus 345 ~~IqeleqdL~a~~eei~~~eel~~~Lrsele~lp~dv~---rk~ytqrikEi~gniRKq~~DI~Kil~etreLqkq~n 420 (521)
T KOG1937|consen 345 RRIQELEQDLEAVDEEIESNEELAEKLRSELEKLPDDVQ---RKVYTQRIKEIDGNIRKQEQDIVKILEETRELQKQEN 420 (521)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCchhH---HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678888888877777776555555666666666555552 23222332 22466677777777777777777643
No 58
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=91.11 E-value=17 Score=36.08 Aligned_cols=47 Identities=17% Similarity=0.196 Sum_probs=33.5
Q ss_pred HHHHHhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhhHHHHHHHH
Q psy14534 103 QREISKLEFGVAQINSTLQVVNETRESDANYLKSTVSTLATLQEKVE 149 (423)
Q Consensus 103 ~~EI~e~e~~l~q~ts~l~~~~Ee~~n~s~~i~s~~~sis~lqek~~ 149 (423)
+.-|.++.....+.++.+...++|+..++..|.+.-..+..|+.+..
T Consensus 194 ~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~ 240 (312)
T PF00038_consen 194 QSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNA 240 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchh
Confidence 34455666666677777788888888888888888777766665544
No 59
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=91.11 E-value=15 Score=41.49 Aligned_cols=49 Identities=20% Similarity=0.318 Sum_probs=22.3
Q ss_pred hhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhhHHHHHHH
Q psy14534 100 PTIQREISKLEFGVAQINSTLQVVNETRESDANYLKSTVSTLATLQEKV 148 (423)
Q Consensus 100 p~~~~EI~e~e~~l~q~ts~l~~~~Ee~~n~s~~i~s~~~sis~lqek~ 148 (423)
..++.|++..|+.+...-.+++.++.-.+.-..++...+..++.+|||-
T Consensus 555 ~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~ 603 (697)
T PF09726_consen 555 KKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKN 603 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 4455555555555555555443333221112223444444455555554
No 60
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=90.64 E-value=0.89 Score=36.72 Aligned_cols=62 Identities=15% Similarity=0.195 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHhhhcchhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhhHHH
Q psy14534 83 ELLESIETIENKVDYNLPTIQREISKLEFGVAQINSTLQVVNETRESDANYLKSTVSTLATL 144 (423)
Q Consensus 83 el~e~ve~~~~~~d~~ip~~~~EI~e~e~~l~q~ts~l~~~~Ee~~n~s~~i~s~~~sis~l 144 (423)
+|+..+|.|+..|.+...+..+.-+.+..-+..+.....++++.+.+++.+|+.+.+.+.+|
T Consensus 7 qLl~ale~Lq~~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql~rL 68 (70)
T PF04899_consen 7 QLLSALEELQQSYEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQLERL 68 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 78999999999999999999999999999999999999999999999999999999988554
No 61
>KOG0996|consensus
Probab=90.62 E-value=8.6 Score=45.44 Aligned_cols=81 Identities=20% Similarity=0.301 Sum_probs=44.5
Q ss_pred ChHhhccccCCCCccccccchhhhh-hhccCcceEEEEEEecCCCeeEEEeeEEEEeccCCccccccccccCCC----CC
Q psy14534 273 KWTDYAQGFGSPESEFWIGNDALHR-LTSQDNMSLRIEFVDIYGKAWYAEYDTFSVASESEGYRLNLSGYHGNA----SD 347 (423)
Q Consensus 273 ~W~eY~~GFG~~~gEfWLGLe~ih~-LT~~~~~~L~I~l~d~~g~~~~a~Y~~F~Vg~e~~~Y~L~lg~ysG~a----gD 347 (423)
-.++|-.||+-.+. -|.-||+ ||..|..+| +|.|..+. |.+--.|+|-++---++. |++.||.- .=
T Consensus 1136 RldEFm~gf~~Is~----kLkemYQmIT~GGdAeL--ElVDslDP--FseGV~FSVrPpKKSWK~-I~NLSGGEKTLSSL 1206 (1293)
T KOG0996|consen 1136 RLDEFMAGFNIISM----KLKEMYQMITLGGDAEL--ELVDSLDP--FSEGVMFSVRPPKKSWKN-ISNLSGGEKTLSSL 1206 (1293)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHhcCCccee--EeeccCCC--cccCceEEeeCchhhhhh-cccCCcchhHHHHH
Confidence 35677777764321 2444555 566778787 33442222 445557999888776664 45555532 11
Q ss_pred c----cCcCCCCCCCcccC
Q psy14534 348 A----MTYQNNMKFSTIDR 362 (423)
Q Consensus 348 s----l~~hng~~FST~Dr 362 (423)
| |....-.||--.|-
T Consensus 1207 ALVFALH~YkPTPlYVMDE 1225 (1293)
T KOG0996|consen 1207 ALVFALHHYKPTPLYVMDE 1225 (1293)
T ss_pred HHHHHHHccCCCCceehhh
Confidence 1 22334467777774
No 62
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=90.61 E-value=17 Score=40.43 Aligned_cols=12 Identities=17% Similarity=0.147 Sum_probs=6.7
Q ss_pred cccCCCCccccc
Q psy14534 279 QGFGSPESEFWI 290 (423)
Q Consensus 279 ~GFG~~~gEfWL 290 (423)
..||.++.++=-
T Consensus 582 ~p~~~lD~~~r~ 593 (650)
T TIGR03185 582 TPLGRLDSSHRE 593 (650)
T ss_pred CCccccChHHHH
Confidence 456666655543
No 63
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=90.60 E-value=6.6 Score=40.90 Aligned_cols=101 Identities=18% Similarity=0.195 Sum_probs=57.3
Q ss_pred HHHHHHhhhhhhhhhHHHHHHhhccccccchhhhhhhhHHHHHHHHHHHHHHhhhcchhHHH---HHHhhhhhhhhhhhh
Q psy14534 43 NEEILQRISHLETSSQTNVKTLFNITKQISGVEHLHSSMMELLESIETIENKVDYNLPTIQR---EISKLEFGVAQINST 119 (423)
Q Consensus 43 ~~~~~~r~~~~e~~~~~l~~~~~n~s~q~~~~~k~~~s~~el~e~ve~~~~~~d~~ip~~~~---EI~e~e~~l~q~ts~ 119 (423)
...+..||+.|-.+..+|++.-..++.... ....+.+|++.+..++.-. ..||.|-. -++.+=.+.++....
T Consensus 263 Ld~i~~rl~~L~~~~~~l~~~~~~~~~~~~----~e~KI~eLy~~l~~~~~~~-~~lP~lv~RL~tL~~lH~~a~~~~~~ 337 (388)
T PF04912_consen 263 LDSIERRLKSLLSELEELAEKRKEAKEDAE----QESKIDELYEILPRWDPYA-PSLPSLVERLKTLKSLHEEAAEFSQT 337 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccccccc----chhHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777766666666644444333222 2345678888888888777 66887743 334444445555555
Q ss_pred hhhhhhhhhhhHHHHHHHHhhhHHHHHHH
Q psy14534 120 LQVVNETRESDANYLKSTVSTLATLQEKV 148 (423)
Q Consensus 120 l~~~~Ee~~n~s~~i~s~~~sis~lqek~ 148 (423)
|..+...+..+..+++.--..|..++++.
T Consensus 338 l~~le~~q~~l~~~l~~~~~~L~~ve~~~ 366 (388)
T PF04912_consen 338 LSELESQQSDLQSQLKKWEELLNKVEEKF 366 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555554444443
No 64
>KOG0964|consensus
Probab=90.55 E-value=12 Score=43.48 Aligned_cols=107 Identities=14% Similarity=0.217 Sum_probs=57.9
Q ss_pred HHHHHHHhhhhhhhhhHHHH--HHhhccccccc-hhhhhhhhHHHHHHHHHHHHHHhhhcc----------hhHHHHHHh
Q psy14534 42 INEEILQRISHLETSSQTNV--KTLFNITKQIS-GVEHLHSSMMELLESIETIENKVDYNL----------PTIQREISK 108 (423)
Q Consensus 42 ~~~~~~~r~~~~e~~~~~l~--~~~~n~s~q~~-~~~k~~~s~~el~e~ve~~~~~~d~~i----------p~~~~EI~e 108 (423)
-++.+++||+-||.+-..|+ .++-+--|.+- ++ ..--..|+...++.|+....... -...-+|..
T Consensus 192 ll~yieerLreLEeEKeeL~~Yqkldk~rr~lEYti--YdrEl~E~~~~l~~le~~r~~~~e~s~~~~~~~~~~~d~~~~ 269 (1200)
T KOG0964|consen 192 LLKYIEERLRELEEEKEELEKYQKLDKERRSLEYTI--YDRELNEINGELERLEEDRSSAPEESEQYIDALDKVEDESED 269 (1200)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhHhhhhhhh--hhhHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHH
Confidence 36789999999999988887 33333333322 00 00011233334444444332221 224667777
Q ss_pred hhhhhhhhhhhhhhhhhhhhhhHHHHHHHH-------hhhHHHHHHHHH
Q psy14534 109 LEFGVAQINSTLQVVNETRESDANYLKSTV-------STLATLQEKVEA 150 (423)
Q Consensus 109 ~e~~l~q~ts~l~~~~Ee~~n~s~~i~s~~-------~sis~lqek~~~ 150 (423)
++.+++.+.+.|+.+++|-..++..-..++ ..++.||+++.-
T Consensus 270 ~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~~ 318 (1200)
T KOG0964|consen 270 LKCEIKELENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQITG 318 (1200)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhh
Confidence 777777777777777776655555422222 235556666553
No 65
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=90.44 E-value=2.5 Score=44.03 Aligned_cols=47 Identities=17% Similarity=0.203 Sum_probs=34.0
Q ss_pred cchhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhhHHH
Q psy14534 98 NLPTIQREISKLEFGVAQINSTLQVVNETRESDANYLKSTVSTLATL 144 (423)
Q Consensus 98 ~ip~~~~EI~e~e~~l~q~ts~l~~~~Ee~~n~s~~i~s~~~sis~l 144 (423)
.+.+++.+.+..-..+...|.+|+.+.|+++.++.+|..+..+++.-
T Consensus 281 ~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emeerg~~mtD~ 327 (359)
T PF10498_consen 281 ELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEERGSSMTDG 327 (359)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 34667777777777777777777777777777777777777766443
No 66
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=90.36 E-value=3.8 Score=37.96 Aligned_cols=28 Identities=32% Similarity=0.560 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHhhhcchhHHHHHHhhh
Q psy14534 83 ELLESIETIENKVDYNLPTIQREISKLE 110 (423)
Q Consensus 83 el~e~ve~~~~~~d~~ip~~~~EI~e~e 110 (423)
+.+++++.--..++..+..+..|+.++.
T Consensus 123 ~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 123 ELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333344444444444
No 67
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=90.34 E-value=9.4 Score=39.98 Aligned_cols=83 Identities=17% Similarity=0.316 Sum_probs=61.4
Q ss_pred HHHHHHHhhhhhhhhhHHHHHHhhcccccc-chhhhhhhhHHHHHHHHHHHHHHhh---hcchhHHHHHHhhhhhhhhhh
Q psy14534 42 INEEILQRISHLETSSQTNVKTLFNITKQI-SGVEHLHSSMMELLESIETIENKVD---YNLPTIQREISKLEFGVAQIN 117 (423)
Q Consensus 42 ~~~~~~~r~~~~e~~~~~l~~~~~n~s~q~-~~~~k~~~s~~el~e~ve~~~~~~d---~~ip~~~~EI~e~e~~l~q~t 117 (423)
-...+.++++.++.+......+..+...+- ..+...+..|.+|++.|..+..+.. ..+.++++.|+.++..=+=+|
T Consensus 26 ~i~~l~~~i~~ld~eI~~~v~~q~~~~~~~~~~l~~a~~~i~~L~~~i~~ik~kA~~sE~~V~~it~dIk~LD~AKrNLT 105 (383)
T PF04100_consen 26 LIAKLRKEIRELDEEIKELVREQSSSGQDAEEDLEEAQEAIQELFEKISEIKSKAEESEQMVQEITRDIKQLDNAKRNLT 105 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666666666555443 3788889999999999999988774 468888999999998887777
Q ss_pred hhhhhhh
Q psy14534 118 STLQVVN 124 (423)
Q Consensus 118 s~l~~~~ 124 (423)
...-+++
T Consensus 106 ~SIT~Lk 112 (383)
T PF04100_consen 106 QSITTLK 112 (383)
T ss_pred HHHHHHH
Confidence 7765543
No 68
>KOG0994|consensus
Probab=90.33 E-value=13 Score=44.04 Aligned_cols=109 Identities=18% Similarity=0.251 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHhhhhhhhhhHHHHHHhhccc----------cccchhhhhhhhHHHHHHHHHHHHHHhhhcchhHHHHH
Q psy14534 37 KTLQAINEEILQRISHLETSSQTNVKTLFNIT----------KQISGVEHLHSSMMELLESIETIENKVDYNLPTIQREI 106 (423)
Q Consensus 37 ~~l~~~~~~~~~r~~~~e~~~~~l~~~~~n~s----------~q~~~~~k~~~s~~el~e~ve~~~~~~d~~ip~~~~EI 106 (423)
.++|.-+..|.+||.+|-.--..|...--++. +-=+.-+.+..++.++.++++.-+.+. -..+.-|
T Consensus 1511 eqi~~L~~~I~e~v~sL~nVd~IL~~T~~di~ra~~L~s~A~~a~~~A~~v~~~ae~V~eaL~~Ad~Aq----~~a~~ai 1586 (1758)
T KOG0994|consen 1511 EQIQQLTGEIQERVASLPNVDAILSRTKGDIARAENLQSEAERARSRAEDVKGQAEDVVEALEEADVAQ----GEAQDAI 1586 (1758)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH
Confidence 44444455666666665443333332222211 222345667777777777776655444 4556667
Q ss_pred HhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhhHHHHHHHH
Q psy14534 107 SKLEFGVAQINSTLQVVNETRESDANYLKSTVSTLATLQEKVE 149 (423)
Q Consensus 107 ~e~e~~l~q~ts~l~~~~Ee~~n~s~~i~s~~~sis~lqek~~ 149 (423)
......+..+--.|..++|+..-.-.-++++...++.|..+++
T Consensus 1587 ~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e 1629 (1758)
T KOG0994|consen 1587 QGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRME 1629 (1758)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666777777667777777777766666655
No 69
>KOG2180|consensus
Probab=90.25 E-value=6.6 Score=44.16 Aligned_cols=88 Identities=16% Similarity=0.321 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHhhhhhhhhhHHHHHHhhccccccc-hhhhhhhhHHHHHHHHHHHHHHhh---hcchhHHHHHHhhhhh
Q psy14534 37 KTLQAINEEILQRISHLETSSQTNVKTLFNITKQIS-GVEHLHSSMMELLESIETIENKVD---YNLPTIQREISKLEFG 112 (423)
Q Consensus 37 ~~l~~~~~~~~~r~~~~e~~~~~l~~~~~n~s~q~~-~~~k~~~s~~el~e~ve~~~~~~d---~~ip~~~~EI~e~e~~ 112 (423)
+.+.-.+.-+..+|+.++...........|+..... .++....+|.+|+.++..+..+.. ..+.+++++||.+++.
T Consensus 36 ~~id~li~ki~~eir~~d~~l~~~Vr~q~N~g~~~~e~l~da~~ai~eL~~~i~eiks~ae~Te~~V~eiTrdIKqLD~A 115 (793)
T KOG2180|consen 36 TNIDSLIQKIQGEIRRVDKNLLAVVRTQENSGTRGKENLADAQAAIEELFQKIQEIKSVAESTEAMVQEITRDIKQLDFA 115 (793)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHH
Confidence 333333455677888888888888999999888876 899999999999999999887764 5689999999999999
Q ss_pred hhhhhhhhhhhh
Q psy14534 113 VAQINSTLQVVN 124 (423)
Q Consensus 113 l~q~ts~l~~~~ 124 (423)
-+-+|+.+-.++
T Consensus 116 KkNLTtSiT~L~ 127 (793)
T KOG2180|consen 116 KKNLTTSITTLH 127 (793)
T ss_pred HhhHHHHHHHHH
Confidence 998888775443
No 70
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=90.12 E-value=9.8 Score=38.04 Aligned_cols=45 Identities=18% Similarity=0.158 Sum_probs=19.2
Q ss_pred hhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHH
Q psy14534 16 KLFLKTKHHLEKEQHVINHKMKTLQAINEEILQRISHLETSSQTN 60 (423)
Q Consensus 16 ~~~~~~~~~le~~~~~~~~~~~~l~~~~~~~~~r~~~~e~~~~~l 60 (423)
+-+.+-...|+...+.....++.|++..+.++-||.+.-.+.+.|
T Consensus 63 ~~l~~ak~eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L 107 (258)
T PF15397_consen 63 KQLQQAKAELQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELNFL 107 (258)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444444444444444444444444443333
No 71
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=90.07 E-value=24 Score=42.24 Aligned_cols=13 Identities=15% Similarity=0.422 Sum_probs=9.2
Q ss_pred ccccccChHhhcc
Q psy14534 267 MQEFNLKWTDYAQ 279 (423)
Q Consensus 267 sv~FnR~W~eY~~ 279 (423)
...|.++|...+.
T Consensus 934 ~~~~~~~~~~~~~ 946 (1201)
T PF12128_consen 934 GSELAENWEELRS 946 (1201)
T ss_pred ccchHHHHHHHHH
Confidence 3568888888843
No 72
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=90.06 E-value=25 Score=36.11 Aligned_cols=170 Identities=18% Similarity=0.217 Sum_probs=78.5
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHH-------HHhhc-cccccchhhhhhhhH-HHHHHHH
Q psy14534 18 FLKTKHHLEKEQHVINHKMKTLQAINEEILQRISHLETSSQTNV-------KTLFN-ITKQISGVEHLHSSM-MELLESI 88 (423)
Q Consensus 18 ~~~~~~~le~~~~~~~~~~~~l~~~~~~~~~r~~~~e~~~~~l~-------~~~~n-~s~q~~~~~k~~~s~-~el~e~v 88 (423)
+...+..|+....+|+.++........++.+-++.|-.+..+++ +-|+| +-+.|..+.+=++-+ +.+-..=
T Consensus 25 l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqEEE~isN~LlKkl~~l~keKe~L~~~~e~EE 104 (310)
T PF09755_consen 25 LRKRIESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQAKAEQEEEFISNTLLKKLQQLKKEKETLALKYEQEE 104 (310)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777776664444444444444444333333 22333 223333333333333 2333333
Q ss_pred HHHHHHhhhcchhHHHHHHhhhhhhhhhh-hhhhhhhhhhhhhHHHHHHHHhhhHH-HHHHHHHHHHHHHHHhhHHHHHH
Q psy14534 89 ETIENKVDYNLPTIQREISKLEFGVAQIN-STLQVVNETRESDANYLKSTVSTLAT-LQEKVEANNIIMQALSDANYLKS 166 (423)
Q Consensus 89 e~~~~~~d~~ip~~~~EI~e~e~~l~q~t-s~l~~~~Ee~~n~s~~i~s~~~sis~-lqek~~~~~kv~~le~Q~~~I~~ 166 (423)
|.+-+..-+.|..++.|--++|..|.+-- ..+.-+.-.+..+..+..++-..+.. .-||+++.+.+++ +|.-
T Consensus 105 E~ltn~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~--EQE~---- 178 (310)
T PF09755_consen 105 EFLTNDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSAKQEELERLRREKVDLENTLEQ--EQEA---- 178 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHH--HHHH----
Confidence 33444444555566666666666665422 11222333344444444444333322 2345555444432 1221
Q ss_pred HHHHHHHHHHHHHHhH-HHHHHHhccCC
Q psy14534 167 TVSTLATLQEKVEANN-IIMQALRNGRS 193 (423)
Q Consensus 167 l~~~v~~~~~ql~~q~-~l~~kl~~~~~ 193 (423)
++.++-.+-++|...+ .|+.+|.....
T Consensus 179 lvN~L~Kqm~~l~~eKr~Lq~~l~~~~s 206 (310)
T PF09755_consen 179 LVNRLWKQMDKLEAEKRRLQEKLEQPVS 206 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccccC
Confidence 2222333444444444 77777776543
No 73
>KOG0976|consensus
Probab=89.92 E-value=28 Score=40.06 Aligned_cols=51 Identities=18% Similarity=0.179 Sum_probs=37.1
Q ss_pred cccchhhHHHHHhhHHHHHHHHHHHHHHHHHHHHH-------HHHhhhhhhhhhHHHH
Q psy14534 11 RYRNGKLFLKTKHHLEKEQHVINHKMKTLQAINEE-------ILQRISHLETSSQTNV 61 (423)
Q Consensus 11 ~~r~~~~~~~~~~~le~~~~~~~~~~~~l~~~~~~-------~~~r~~~~e~~~~~l~ 61 (423)
..-.|-++++|.-.|+-.-.++.+.|.+++..+.. ..+||+-+-.++.+++
T Consensus 247 ~rk~~s~i~E~d~~lq~sak~ieE~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lk 304 (1265)
T KOG0976|consen 247 LRKTCSMIEEQDMDLQASAKEIEEKMRQLKAKNSVLGDELSQKEELVKELQEELDTLK 304 (1265)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 34567889999999999988888888888775443 5557766665555554
No 74
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=89.89 E-value=0.61 Score=47.81 Aligned_cols=101 Identities=21% Similarity=0.333 Sum_probs=8.7
Q ss_pred HHHHHhhhhhhhhhHHHHHHhhccccccc----hhhhhhhhHHHHHHHHHHHHHHhhhcchhHHHHHHhhhhhhhhhhhh
Q psy14534 44 EEILQRISHLETSSQTNVKTLFNITKQIS----GVEHLHSSMMELLESIETIENKVDYNLPTIQREISKLEFGVAQINST 119 (423)
Q Consensus 44 ~~~~~r~~~~e~~~~~l~~~~~n~s~q~~----~~~k~~~s~~el~e~ve~~~~~~d~~ip~~~~EI~e~e~~l~q~ts~ 119 (423)
..+-|||..||.....|...+..++..|+ .++.+-+++-++-.++..+...+ ..++.-|..++-.+..+...
T Consensus 31 s~I~eRLsaLEssv~sL~~SVs~lss~iSdLss~L~~l~~sl~~~~s~L~sLsstV----~~lq~Sl~~lsssVs~lS~~ 106 (326)
T PF04582_consen 31 SPIRERLSALESSVASLSDSVSSLSSTISDLSSDLQDLASSLADMTSELNSLSSTV----TSLQSSLSSLSSSVSSLSST 106 (326)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhhHHhhhhh
Confidence 45788999999888888877777776665 33344444433333333333222 33344444444444444444
Q ss_pred hhhhhhhhhhhHHHHHHHHhhhHHHHHHH
Q psy14534 120 LQVVNETRESDANYLKSTVSTLATLQEKV 148 (423)
Q Consensus 120 l~~~~Ee~~n~s~~i~s~~~sis~lqek~ 148 (423)
+......+-+++..++++..+|++|+.-+
T Consensus 107 ls~h~ssIS~Lqs~v~~lsTdvsNLksdV 135 (326)
T PF04582_consen 107 LSDHSSSISDLQSSVSALSTDVSNLKSDV 135 (326)
T ss_dssp -----------HHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHhhhhhhhhhhhhhhhh
Confidence 44445555555555555555554444333
No 75
>KOG0579|consensus
Probab=89.89 E-value=27 Score=39.69 Aligned_cols=152 Identities=14% Similarity=0.197 Sum_probs=80.0
Q ss_pred cccchhhHH-HHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhccccccc-hhhhhhhhHHHHHHHH
Q psy14534 11 RYRNGKLFL-KTKHHLEKEQHVINHKMKTLQAINEEILQRISHLETSSQTNVKTLFNITKQIS-GVEHLHSSMMELLESI 88 (423)
Q Consensus 11 ~~r~~~~~~-~~~~~le~~~~~~~~~~~~l~~~~~~~~~r~~~~e~~~~~l~~~~~n~s~q~~-~~~k~~~s~~el~e~v 88 (423)
+-.--||++ ++|+.|-+-|+.-.|+..+|+.... .-+|..-++.-.++-|.+|+-- .++.+.-+- -+.|
T Consensus 784 k~eemrflRrQeLreLR~LQkeE~R~qqqL~~k~~------~q~Eq~~rrFeqE~~~kkr~~d~EmenlErqQ---kq~i 854 (1187)
T KOG0579|consen 784 KDEEMRFLRRQELRELRRLQKEEARQQQQLQAKGI------KQVEQQARRFEQEQTNKKRTSDLEMENLERQQ---KQEI 854 (1187)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH---HHHH
Confidence 333446664 6789999989888888888855332 2223333333334444443321 111111111 1223
Q ss_pred HHHHHHhhhcchhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHH------------
Q psy14534 89 ETIENKVDYNLPTIQREISKLEFGVAQINSTLQVVNETRESDANYLKSTVSTLATLQEKVEANNIIMQ------------ 156 (423)
Q Consensus 89 e~~~~~~d~~ip~~~~EI~e~e~~l~q~ts~l~~~~Ee~~n~s~~i~s~~~sis~lqek~~~~~kv~~------------ 156 (423)
|.+|.+-. -.+++|-+.+..+-. -.+..++|-+++.+++.+.-+.-+|+.|.|-.++++.++
T Consensus 855 E~~Eq~h~---~rlR~eakRir~EQe---kd~~~Fqe~LK~~kKe~k~e~~~l~k~qrkdalkqr~eq~~~~~ql~ekdF 928 (1187)
T KOG0579|consen 855 EDTEQAHE---HRLRNEAKRIRIEQE---KDMRAFQERLKQEKKEFKQELTMLSKVQRKDALKQRKEQIEIEHQLKEKDF 928 (1187)
T ss_pred HHHHHHHH---HHHHHHHHHhhhhhH---HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 33333321 123444333332222 235667788888888888888888888888777666553
Q ss_pred HHhhHHHHHHHHHHHHHHHHH
Q psy14534 157 ALSDANYLKSTVSTLATLQEK 177 (423)
Q Consensus 157 le~Q~~~I~~l~~~v~~~~~q 177 (423)
|-.|...+.-.++.+.+.|+.
T Consensus 929 v~kqqq~le~~lkrm~~~~k~ 949 (1187)
T KOG0579|consen 929 VMKQQQNLEAMLKRMAEKHKE 949 (1187)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 233344444444555555544
No 76
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=89.79 E-value=2.3 Score=41.69 Aligned_cols=74 Identities=22% Similarity=0.281 Sum_probs=52.1
Q ss_pred hhccccccchhhhhhhhHHHHHHHHHHHHHHhhhcchhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhh
Q psy14534 64 LFNITKQISGVEHLHSSMMELLESIETIENKVDYNLPTIQREISKLEFGVAQINSTLQVVNETRESDANYLKSTVSTL 141 (423)
Q Consensus 64 ~~n~s~q~~~~~k~~~s~~el~e~ve~~~~~~d~~ip~~~~EI~e~e~~l~q~ts~l~~~~Ee~~n~s~~i~s~~~si 141 (423)
|.++...+..|.++.. +|++.++.+++.- +.|-+.++|+..|..+=..-..+|..++.||..|-..|++.-..-
T Consensus 3 i~~ir~K~~~lek~k~---~i~~e~~~~e~ee-~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er 76 (230)
T PF10146_consen 3 IKEIRNKTLELEKLKN---EILQEVESLENEE-KCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESER 76 (230)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555554 4555555555554 788999999999999999999999999999877666665554444
No 77
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=89.76 E-value=0.38 Score=49.26 Aligned_cols=117 Identities=10% Similarity=0.226 Sum_probs=25.7
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhccccccchhhhhhhhHHHHHHHHHHHHHHhhh
Q psy14534 18 FLKTKHHLEKEQHVINHKMKTLQAINEEILQRISHLETSSQTNVKTLFNITKQISGVEHLHSSMMELLESIETIENKVDY 97 (423)
Q Consensus 18 ~~~~~~~le~~~~~~~~~~~~l~~~~~~~~~r~~~~e~~~~~l~~~~~n~s~q~~~~~k~~~s~~el~e~ve~~~~~~d~ 97 (423)
++++|..||..+.-|...+..+...+-.+.-+|..+..+...+..++.+++..| -.+-.+|..|..
T Consensus 33 I~eRLsaLEssv~sL~~SVs~lss~iSdLss~L~~l~~sl~~~~s~L~sLsstV----------~~lq~Sl~~lss---- 98 (326)
T PF04582_consen 33 IRERLSALESSVASLSDSVSSLSSTISDLSSDLQDLASSLADMTSELNSLSSTV----------TSLQSSLSSLSS---- 98 (326)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHhh----
Confidence 456666677766666666555533333333333333333333333333333222 222233333322
Q ss_pred cchhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhhHHHHHHH
Q psy14534 98 NLPTIQREISKLEFGVAQINSTLQVVNETRESDANYLKSTVSTLATLQEKV 148 (423)
Q Consensus 98 ~ip~~~~EI~e~e~~l~q~ts~l~~~~Ee~~n~s~~i~s~~~sis~lqek~ 148 (423)
.+.++..=|..-+-.+-...+.++.+.-++-|++..|.+++-+|+.||.++
T Consensus 99 sVs~lS~~ls~h~ssIS~Lqs~v~~lsTdvsNLksdVSt~aL~ItdLe~RV 149 (326)
T PF04582_consen 99 SVSSLSSTLSDHSSSISDLQSSVSALSTDVSNLKSDVSTQALNITDLESRV 149 (326)
T ss_dssp -------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhhhhhhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhcchHhhHHHHH
Confidence 223444455556666667777778888888888888888888886666555
No 78
>KOG0977|consensus
Probab=89.59 E-value=37 Score=37.44 Aligned_cols=29 Identities=10% Similarity=0.232 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhHHHHHHh
Q psy14534 36 MKTLQAINEEILQRISHLETSSQTNVKTL 64 (423)
Q Consensus 36 ~~~l~~~~~~~~~r~~~~e~~~~~l~~~~ 64 (423)
|.+|--+....-||||+||.+=+.|...+
T Consensus 44 l~~LNDRLA~YIekVR~LEaqN~~L~~di 72 (546)
T KOG0977|consen 44 LQELNDRLAVYIEKVRFLEAQNRKLEHDI 72 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44443333445678888888877776443
No 79
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=89.55 E-value=37 Score=37.79 Aligned_cols=49 Identities=14% Similarity=0.181 Sum_probs=24.3
Q ss_pred hcchhHHHHHHhhhhhhhhhhhhhhhh--hhhhhhhHHHHHHHHhhhHHHH
Q psy14534 97 YNLPTIQREISKLEFGVAQINSTLQVV--NETRESDANYLKSTVSTLATLQ 145 (423)
Q Consensus 97 ~~ip~~~~EI~e~e~~l~q~ts~l~~~--~Ee~~n~s~~i~s~~~sis~lq 145 (423)
..+..+..+|++++.++..+..+|... .|++..+...+......+..++
T Consensus 391 ~~~~~~~~~~~~~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~~~l~~~~ 441 (650)
T TIGR03185 391 DAKSQLLKELRELEEELAEVDKKISTIPSEEQIAQLLEELGEAQNELFRSE 441 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666555555432 3444444444444444443333
No 80
>PRK04863 mukB cell division protein MukB; Provisional
Probab=89.53 E-value=32 Score=42.31 Aligned_cols=48 Identities=10% Similarity=0.128 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhccccccc
Q psy14534 25 LEKEQHVINHKMKTLQAINEEILQRISHLETSSQTNVKTLFNITKQIS 72 (423)
Q Consensus 25 le~~~~~~~~~~~~l~~~~~~~~~r~~~~e~~~~~l~~~~~n~s~q~~ 72 (423)
...+.....++|...+....++++.+..|+.....|.++...+.+-..
T Consensus 291 ~r~rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~kyle 338 (1486)
T PRK04863 291 LRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLN 338 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555556667777777777777777777776665443
No 81
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=89.38 E-value=18 Score=35.60 Aligned_cols=17 Identities=6% Similarity=0.139 Sum_probs=7.5
Q ss_pred HHhhHHHHHHHHHHHHH
Q psy14534 21 TKHHLEKEQHVINHKMK 37 (423)
Q Consensus 21 ~~~~le~~~~~~~~~~~ 37 (423)
+++.|+.+.+.+..++.
T Consensus 18 ~~~~l~~~~e~~~~~L~ 34 (264)
T PF06008_consen 18 APYKLLSSIEDLTNQLR 34 (264)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 34444444444444443
No 82
>PRK10869 recombination and repair protein; Provisional
Probab=89.28 E-value=11 Score=41.28 Aligned_cols=36 Identities=14% Similarity=-0.008 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHH
Q psy14534 25 LEKEQHVINHKMKTLQAINEEILQRISHLETSSQTN 60 (423)
Q Consensus 25 le~~~~~~~~~~~~l~~~~~~~~~r~~~~e~~~~~l 60 (423)
+=..-..+.+++.++++....+.+|+..|+-+..+|
T Consensus 162 ~y~~~~~~~~~l~~l~~~~~~~~~~~d~l~fql~Ei 197 (553)
T PRK10869 162 AYQLWHQSCRDLAQHQQQSQERAARKQLLQYQLKEL 197 (553)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444445554444444433
No 83
>KOG0999|consensus
Probab=89.24 E-value=22 Score=39.26 Aligned_cols=82 Identities=22% Similarity=0.297 Sum_probs=50.9
Q ss_pred HHHhhhhhhhhhHHHHHHhhccccccchhhhhhhhHHHHHHHHHHHHHHhhhcchhHHHHHHhhhhhhhhhhhhhhhhhh
Q psy14534 46 ILQRISHLETSSQTNVKTLFNITKQISGVEHLHSSMMELLESIETIENKVDYNLPTIQREISKLEFGVAQINSTLQVVNE 125 (423)
Q Consensus 46 ~~~r~~~~e~~~~~l~~~~~n~s~q~~~~~k~~~s~~el~e~ve~~~~~~d~~ip~~~~EI~e~e~~l~q~ts~l~~~~E 125 (423)
...+|=.||++++.+..++.|+....-++-++|.-.-+.=..||.=-.+ ++.||++..|--++.-++-+.+-|
T Consensus 105 yl~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~r-------lr~elKe~KfRE~RllseYSELEE 177 (772)
T KOG0999|consen 105 YLQKILELENELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRR-------LRDELKEYKFREARLLSEYSELEE 177 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3348889999999999999999988877777777665555555543333 355555555544444444444444
Q ss_pred hhhhhHHHH
Q psy14534 126 TRESDANYL 134 (423)
Q Consensus 126 e~~n~s~~i 134 (423)
|-=.+.++|
T Consensus 178 ENIsLQKqV 186 (772)
T KOG0999|consen 178 ENISLQKQV 186 (772)
T ss_pred hcchHHHHH
Confidence 433333333
No 84
>KOG4674|consensus
Probab=89.04 E-value=30 Score=43.06 Aligned_cols=131 Identities=21% Similarity=0.207 Sum_probs=67.8
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHH-------HHHHHHHhhhhhhhhhHHHHHHhhccccccchhh-hhhhhHHHHHHHHHH
Q psy14534 19 LKTKHHLEKEQHVINHKMKTLQA-------INEEILQRISHLETSSQTNVKTLFNITKQISGVE-HLHSSMMELLESIET 90 (423)
Q Consensus 19 ~~~~~~le~~~~~~~~~~~~l~~-------~~~~~~~r~~~~e~~~~~l~~~~~n~s~q~~~~~-k~~~s~~el~e~ve~ 90 (423)
+-++..+....+.+.+.+.++++ ..++...+|..|+.+-+.|..++.-+...++.+. ++.+-+-... +++.
T Consensus 100 ~~~~~~~~~~~~~l~~~~se~~~qkr~l~~~le~~~~ele~l~~~n~~l~~ql~ss~~~~~e~e~r~~e~~s~~v-s~q~ 178 (1822)
T KOG4674|consen 100 SWEIDALKLENSQLRRAKSELQEQKRQLMELLERQKAELEALESENKDLNDQLKSSTKTLSELEARLQETQSEDV-SSQL 178 (1822)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 33444555555555555555553 2334444555666666666666666555555332 2222221111 1222
Q ss_pred HHHHhhhcchhHHHHHHhhhhhhhhhhhhhhhhhhh----hhhhHHHHHHHHhhhHHHHHHHHH
Q psy14534 91 IENKVDYNLPTIQREISKLEFGVAQINSTLQVVNET----RESDANYLKSTVSTLATLQEKVEA 150 (423)
Q Consensus 91 ~~~~~d~~ip~~~~EI~e~e~~l~q~ts~l~~~~Ee----~~n~s~~i~s~~~sis~lqek~~~ 150 (423)
-++++.....=+.+++.=++.+|...+.+|..+.-+ +.+++..+..+..++..+|++.+.
T Consensus 179 k~~rl~QEksll~s~~~wL~~eL~~~~ekll~~~re~s~~~~~L~~~L~~~~~~~~~~q~~~~~ 242 (1822)
T KOG4674|consen 179 KEERLEQEKSLLESENKWLSRELSKVNEKLLSLRREHSIEVEQLEEKLSDLKESLAELQEKNKS 242 (1822)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233333333444556666666666666666666666 555666666666666666666553
No 85
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=88.90 E-value=26 Score=34.81 Aligned_cols=36 Identities=8% Similarity=0.240 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhccccc
Q psy14534 35 KMKTLQAINEEILQRISHLETSSQTNVKTLFNITKQ 70 (423)
Q Consensus 35 ~~~~l~~~~~~~~~r~~~~e~~~~~l~~~~~n~s~q 70 (423)
.|..|--+...--+||+.||.+-+.|...|..+...
T Consensus 5 eL~~LNdRla~YIekVr~LE~~N~~Le~~i~~~~~~ 40 (312)
T PF00038_consen 5 ELQSLNDRLASYIEKVRFLEQENKRLESEIEELREK 40 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhc
Confidence 344553344455789999999999988777665543
No 86
>KOG0612|consensus
Probab=88.88 E-value=21 Score=42.54 Aligned_cols=7 Identities=29% Similarity=0.183 Sum_probs=2.7
Q ss_pred HHHHhhH
Q psy14534 19 LKTKHHL 25 (423)
Q Consensus 19 ~~~~~~l 25 (423)
.+.|.++
T Consensus 471 ~e~i~~l 477 (1317)
T KOG0612|consen 471 EETIEKL 477 (1317)
T ss_pred HHHHHHH
Confidence 3333344
No 87
>KOG0978|consensus
Probab=88.46 E-value=50 Score=37.48 Aligned_cols=93 Identities=15% Similarity=0.093 Sum_probs=43.8
Q ss_pred HHHHHhhhhhhhhhhhhhhhhhhhhhh-------hHHHHHHHHhhhHHHHHHHHH-HHHHHHHHhhHHHHHHHHHHHHHH
Q psy14534 103 QREISKLEFGVAQINSTLQVVNETRES-------DANYLKSTVSTLATLQEKVEA-NNIIMQALSDANYLKSTVSTLATL 174 (423)
Q Consensus 103 ~~EI~e~e~~l~q~ts~l~~~~Ee~~n-------~s~~i~s~~~sis~lqek~~~-~~kv~~le~Q~~~I~~l~~~v~~~ 174 (423)
...|.++|+.++..++..+-+-.|++- .+..+.....++..||.+.+. +.++.+++.+...+..-+......
T Consensus 523 ~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k 602 (698)
T KOG0978|consen 523 ELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFK 602 (698)
T ss_pred HHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666655444444422 222222223334444444443 334445555555555444444433
Q ss_pred HHHHHHhH-HHHHHHhccCCCC
Q psy14534 175 QEKVEANN-IIMQALRNGRSEG 195 (423)
Q Consensus 175 ~~ql~~q~-~l~~kl~~~~~~~ 195 (423)
-+++...+ .|..+|.+.+..+
T Consensus 603 ~~rleEE~e~L~~kle~~k~~~ 624 (698)
T KOG0978|consen 603 RKRLEEELERLKRKLERLKKEE 624 (698)
T ss_pred HHHHHHHHHHHHHHHHHhcccc
Confidence 33333332 6666776655433
No 88
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=88.17 E-value=40 Score=36.84 Aligned_cols=41 Identities=17% Similarity=0.157 Sum_probs=17.9
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHH
Q psy14534 21 TKHHLEKEQHVINHKMKTLQAINEEILQRISHLETSSQTNV 61 (423)
Q Consensus 21 ~~~~le~~~~~~~~~~~~l~~~~~~~~~r~~~~e~~~~~l~ 61 (423)
+..++...-..+.++++++++....+.+|+..++-+..+|.
T Consensus 162 ~~~~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe 202 (563)
T TIGR00634 162 AYRELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQLEELE 202 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444444444444433
No 89
>PRK09039 hypothetical protein; Validated
Probab=87.98 E-value=24 Score=36.41 Aligned_cols=48 Identities=13% Similarity=0.063 Sum_probs=23.3
Q ss_pred HHHHHhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhhHHHHHHHHH
Q psy14534 103 QREISKLEFGVAQINSTLQVVNETRESDANYLKSTVSTLATLQEKVEA 150 (423)
Q Consensus 103 ~~EI~e~e~~l~q~ts~l~~~~Ee~~n~s~~i~s~~~sis~lqek~~~ 150 (423)
......++.+|+..-+.....+.++.-+..+|.+.-..+..|+..++.
T Consensus 115 ~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ 162 (343)
T PRK09039 115 EGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDA 162 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444445555555555555555555555554443
No 90
>KOG2196|consensus
Probab=87.78 E-value=14 Score=36.70 Aligned_cols=16 Identities=6% Similarity=0.044 Sum_probs=7.4
Q ss_pred hhhhhhhhHHHHHHhh
Q psy14534 50 ISHLETSSQTNVKTLF 65 (423)
Q Consensus 50 ~~~~e~~~~~l~~~~~ 65 (423)
+..++..|++|--++.
T Consensus 122 ~~~vk~~qkrLdq~L~ 137 (254)
T KOG2196|consen 122 VVKVKLDQKRLDQELE 137 (254)
T ss_pred HHHHHhHHHHHHHHHH
Confidence 3444445555544433
No 91
>KOG0018|consensus
Probab=87.46 E-value=69 Score=37.97 Aligned_cols=71 Identities=17% Similarity=0.218 Sum_probs=31.2
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhccccccchhhhhhhhHHHHHHHHHHHHHHh
Q psy14534 22 KHHLEKEQHVINHKMKTLQAINEEILQRISHLETSSQTNVKTLFNITKQISGVEHLHSSMMELLESIETIENKV 95 (423)
Q Consensus 22 ~~~le~~~~~~~~~~~~l~~~~~~~~~r~~~~e~~~~~l~~~~~n~s~q~~~~~k~~~s~~el~e~ve~~~~~~ 95 (423)
+|-||..+..++.+|..+....+..+.-+...+.+..++.-++.++.| .++...+.|-+|-+.++..++++
T Consensus 685 i~~le~~~~~~~~~~~~~k~~l~~~~~El~~~~~~i~~~~p~i~~i~r---~l~~~e~~~~~L~~~~n~ved~i 755 (1141)
T KOG0018|consen 685 IHGLEMRLKYSKLDLEQLKRSLEQNELELQRTESEIDEFGPEISEIKR---KLQNREGEMKELEERMNKVEDRI 755 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444433333333333222222333333333333333444444444 34555555666666666666555
No 92
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=87.43 E-value=4.9 Score=34.55 Aligned_cols=94 Identities=10% Similarity=0.169 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhHHHH---HHhhccccccchhhhhhhhHHHHHHHHHHHHHHhhhcchhHHHHHHhhhhh
Q psy14534 36 MKTLQAINEEILQRISHLETSSQTNV---KTLFNITKQISGVEHLHSSMMELLESIETIENKVDYNLPTIQREISKLEFG 112 (423)
Q Consensus 36 ~~~l~~~~~~~~~r~~~~e~~~~~l~---~~~~n~s~q~~~~~k~~~s~~el~e~ve~~~~~~d~~ip~~~~EI~e~e~~ 112 (423)
...+++.+..+...+..||.+.++.. +++..+. .-+.+.+.=|.|+ ++..++.-+|+++..|..+|..
T Consensus 12 ~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~l~-~d~~vyk~VG~vl--------v~~~~~e~~~~l~~r~e~ie~~ 82 (110)
T TIGR02338 12 LQQLQQQLQAVATQKQQVEAQLKEAEKALEELERLP-DDTPVYKSVGNLL--------VKTDKEEAIQELKEKKETLELR 82 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CcchhHHHhchhh--------heecHHHHHHHHHHHHHHHHHH
Confidence 34444444555556666666665555 3333333 3345555555553 2334555667777777777888
Q ss_pred hhhhhhhhhhhhhhhhhhHHHHHHHH
Q psy14534 113 VAQINSTLQVVNETRESDANYLKSTV 138 (423)
Q Consensus 113 l~q~ts~l~~~~Ee~~n~s~~i~s~~ 138 (423)
++.+...+..+++.+.++..++..+.
T Consensus 83 i~~lek~~~~l~~~l~e~q~~l~~~~ 108 (110)
T TIGR02338 83 VKTLQRQEERLREQLKELQEKIQEAL 108 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88888888888888877777777654
No 93
>PRK11820 hypothetical protein; Provisional
Probab=87.18 E-value=6 Score=40.00 Aligned_cols=60 Identities=22% Similarity=0.231 Sum_probs=37.1
Q ss_pred hHHHHHHhhhhhhhhhhhhh--------------hhhhhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHH
Q psy14534 101 TIQREISKLEFGVAQINSTL--------------QVVNETRESDANYLKSTVSTLATLQEKVEANNIIMQALSDANYL 164 (423)
Q Consensus 101 ~~~~EI~e~e~~l~q~ts~l--------------~~~~Ee~~n~s~~i~s~~~sis~lqek~~~~~kv~~le~Q~~~I 164 (423)
+|+.||..+.-++++.-..| |..+.|+ ..|.||+.++.--+--++++..++++.+|..+|
T Consensus 214 DI~EEi~RL~sHl~~f~~~L~~~~~vGrkLDFL~QEm~RE~----NTigSKs~~~~is~~vVe~K~elEkiREQVQNI 287 (288)
T PRK11820 214 DIAEELDRLKSHLKEFREILKKGGPVGRKLDFLMQELNREA----NTLGSKSNDAEITNLVVELKVLIEQMREQVQNI 287 (288)
T ss_pred chHHHHHHHHHHHHHHHHHHhcCCCCCcchhHHHHHHhHHH----HHHHHccCcHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 67788888887777666666 4444443 455566666544555566666666666665544
No 94
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=87.16 E-value=18 Score=34.76 Aligned_cols=114 Identities=11% Similarity=0.117 Sum_probs=77.8
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhccccccchhhhhhhhHHHHHHHHHHHHHHhhh
Q psy14534 18 FLKTKHHLEKEQHVINHKMKTLQAINEEILQRISHLETSSQTNVKTLFNITKQISGVEHLHSSMMELLESIETIENKVDY 97 (423)
Q Consensus 18 ~~~~~~~le~~~~~~~~~~~~l~~~~~~~~~r~~~~e~~~~~l~~~~~n~s~q~~~~~k~~~s~~el~e~ve~~~~~~d~ 97 (423)
+...|..|+.....|..+.+.|+.-++..+ -....|++++-++-+|+.++. ..--+...++.
T Consensus 6 L~~~v~dL~~~n~~L~~en~kL~~~ve~~e-------e~na~L~~e~~~L~~q~~s~Q-----------qal~~aK~l~e 67 (193)
T PF14662_consen 6 LLSCVEDLQLNNQKLADENAKLQRSVETAE-------EGNAQLAEEITDLRKQLKSLQ-----------QALQKAKALEE 67 (193)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHH
Confidence 345678888888888888887766555544 345567777777777775442 22234455667
Q ss_pred cchhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhhHHHHHHHH
Q psy14534 98 NLPTIQREISKLEFGVAQINSTLQVVNETRESDANYLKSTVSTLATLQEKVE 149 (423)
Q Consensus 98 ~ip~~~~EI~e~e~~l~q~ts~l~~~~Ee~~n~s~~i~s~~~sis~lqek~~ 149 (423)
.+-+++...+.+|+.-+++.+....+..|...+...|...-+..-+++...+
T Consensus 68 EledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~ 119 (193)
T PF14662_consen 68 ELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERD 119 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhh
Confidence 7788999999999999999988887777776666666655555444444443
No 95
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=86.99 E-value=29 Score=33.14 Aligned_cols=56 Identities=14% Similarity=0.201 Sum_probs=26.7
Q ss_pred hhHHHHHHHHHHHHHHh-hhcchhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHH
Q psy14534 79 SSMMELLESIETIENKV-DYNLPTIQREISKLEFGVAQINSTLQVVNETRESDANYLKSTV 138 (423)
Q Consensus 79 ~s~~el~e~ve~~~~~~-d~~ip~~~~EI~e~e~~l~q~ts~l~~~~Ee~~n~s~~i~s~~ 138 (423)
+.+..+-+.+..|..-+ |+++|+ ..++...|......+....+.+.++..++....
T Consensus 96 ~el~k~~~~l~~L~~L~~dknL~e----ReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~ 152 (194)
T PF15619_consen 96 EELLKTKDELKHLKKLSEDKNLAE----REELQRKLSQLEQKLQEKEKKIQELEKQLELEN 152 (194)
T ss_pred HHHHHHHHHHHHHHHHHHcCCchh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444422 355655 234455555555555555555555555444333
No 96
>PF01410 COLFI: Fibrillar collagen C-terminal domain; InterPro: IPR000885 Collagens contain a large number of globular domains in between the regions of triple helical repeats IPR008160 from INTERPRO. These domains are involved in binding diverse substrates. One of these domains is found at the C terminus of fibrillar collagens. The exact function of this domain is unknown.; GO: 0005201 extracellular matrix structural constituent, 0005581 collagen
Probab=86.63 E-value=0.3 Score=47.01 Aligned_cols=28 Identities=18% Similarity=0.095 Sum_probs=23.5
Q ss_pred CCCceEEEECCCc-------ccccC-CceEEEEEec
Q psy14534 237 GHSGLQLISLGRS-------VLCDE-HHWMTIQRRY 264 (423)
Q Consensus 237 ~~sGvY~I~p~~~-------v~Cd~-~GWTVIQrR~ 264 (423)
-.+|.|.|.|+.+ |||+| +|||-|--+.
T Consensus 25 ~~dG~YwIDPN~G~~~Dai~v~C~~~~g~TCi~p~~ 60 (214)
T PF01410_consen 25 LPDGEYWIDPNGGSPRDAIEVFCNFTTGETCISPDQ 60 (214)
T ss_pred cCCCcEeECCCCCCCCCcEEEEEeeeeceEEEeccC
Confidence 4799999999863 79998 5899987665
No 97
>KOG0980|consensus
Probab=85.87 E-value=42 Score=38.91 Aligned_cols=52 Identities=13% Similarity=0.319 Sum_probs=22.3
Q ss_pred HHHHHhhhhhhhhhHHHHHHhhccccccc----hhhhhhhhHHHHHHHHHHHHHHh
Q psy14534 44 EEILQRISHLETSSQTNVKTLFNITKQIS----GVEHLHSSMMELLESIETIENKV 95 (423)
Q Consensus 44 ~~~~~r~~~~e~~~~~l~~~~~n~s~q~~----~~~k~~~s~~el~e~ve~~~~~~ 95 (423)
+.+.+.+..|..+-..|......+.+|+. +++++.....+|=+.||.+.+.-
T Consensus 427 ~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~ 482 (980)
T KOG0980|consen 427 EKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAA 482 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444433 33344444444444444444443
No 98
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=85.78 E-value=28 Score=33.26 Aligned_cols=77 Identities=19% Similarity=0.297 Sum_probs=31.4
Q ss_pred HHhhccccccchhhhhhhhHHHHHHHHHHHHHHhhhcchhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhh
Q psy14534 62 KTLFNITKQISGVEHLHSSMMELLESIETIENKVDYNLPTIQREISKLEFGVAQINSTLQVVNETRESDANYLKSTVSTL 141 (423)
Q Consensus 62 ~~~~n~s~q~~~~~k~~~s~~el~e~ve~~~~~~d~~ip~~~~EI~e~e~~l~q~ts~l~~~~Ee~~n~s~~i~s~~~si 141 (423)
.+...+.+++....+-+.++..+-..+..++.. +.+++.|-.-++..+.+. ..|-..+.....+++.+|
T Consensus 69 ~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~----l~~Lk~e~evL~qr~~kl-------e~ErdeL~~kf~~~i~ev 137 (201)
T PF13851_consen 69 EEVEELRKQLKNYEKDKQSLQNLKARLKELEKE----LKDLKWEHEVLEQRFEKL-------EQERDELYRKFESAIQEV 137 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444333333333322 234444444444433333 333333344444444444
Q ss_pred HHHHHHHHHHH
Q psy14534 142 ATLQEKVEANN 152 (423)
Q Consensus 142 s~lqek~~~~~ 152 (423)
|.+....+
T Consensus 138 ---qQk~~~kn 145 (201)
T PF13851_consen 138 ---QQKTGLKN 145 (201)
T ss_pred ---HHHHHHHH
Confidence 44544433
No 99
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=85.64 E-value=24 Score=40.10 Aligned_cols=45 Identities=18% Similarity=0.192 Sum_probs=25.8
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHH-------HHHHhhhhhhhhhHHHHH
Q psy14534 18 FLKTKHHLEKEQHVINHKMKTLQAINE-------EILQRISHLETSSQTNVK 62 (423)
Q Consensus 18 ~~~~~~~le~~~~~~~~~~~~l~~~~~-------~~~~r~~~~e~~~~~l~~ 62 (423)
|.+||.++|+.-..|-..+.+.|+..+ +..+||..|-.....|..
T Consensus 270 L~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~l~aL~~ 321 (717)
T PF09730_consen 270 LKQQLLQVEREKSSLLSNLQESQKQLEHAQGALSEQQEKINRLTEQLDALRK 321 (717)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 566777777777666666666655432 344455555544444444
No 100
>KOG0995|consensus
Probab=85.52 E-value=41 Score=37.16 Aligned_cols=22 Identities=9% Similarity=0.185 Sum_probs=11.9
Q ss_pred HHHhhHHHHHHHHHHHHHHHHH
Q psy14534 20 KTKHHLEKEQHVINHKMKTLQA 41 (423)
Q Consensus 20 ~~~~~le~~~~~~~~~~~~l~~ 41 (423)
.+|..|+++...|.+++++.+|
T Consensus 235 ~~ie~l~~~n~~l~e~i~e~ek 256 (581)
T KOG0995|consen 235 NEIEDLKKTNRELEEMINEREK 256 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 4555555555555555555443
No 101
>KOG3850|consensus
Probab=85.48 E-value=9.9 Score=40.00 Aligned_cols=68 Identities=13% Similarity=0.150 Sum_probs=53.3
Q ss_pred hhhhhhhHHHHHHHHHHHHHHhhhcchhHHHHHHhhhhhhh-----------hhhhhhhhhhhhhhhhHHHHHHHHhhh
Q psy14534 74 VEHLHSSMMELLESIETIENKVDYNLPTIQREISKLEFGVA-----------QINSTLQVVNETRESDANYLKSTVSTL 141 (423)
Q Consensus 74 ~~k~~~s~~el~e~ve~~~~~~d~~ip~~~~EI~e~e~~l~-----------q~ts~l~~~~Ee~~n~s~~i~s~~~si 141 (423)
||.+++-+.||.+-.-.||++++..--++++|++=.-+.|- |.+--+..-+-|+.|++.++++|.+.|
T Consensus 262 l~aileeL~eIk~~q~~Leesye~Lke~~krdy~fi~etLQEERyR~erLEEqLNdlteLqQnEi~nLKqElasmeerv 340 (455)
T KOG3850|consen 262 LDAILEELREIKETQALLEESYERLKEQIKRDYKFIAETLQEERYRYERLEEQLNDLTELQQNEIANLKQELASMEERV 340 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999874322222 222223445678999999999999876
No 102
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=85.40 E-value=24 Score=38.05 Aligned_cols=91 Identities=19% Similarity=0.275 Sum_probs=47.0
Q ss_pred hhhhhhhHHHHHHhhccccccchh-----------hhhhhhHHHHHHHHHH-HH---------HHhhhcchhHHHHHHhh
Q psy14534 51 SHLETSSQTNVKTLFNITKQISGV-----------EHLHSSMMELLESIET-IE---------NKVDYNLPTIQREISKL 109 (423)
Q Consensus 51 ~~~e~~~~~l~~~~~n~s~q~~~~-----------~k~~~s~~el~e~ve~-~~---------~~~d~~ip~~~~EI~e~ 109 (423)
..++..+++|++.++|+.+.+..- -|+++.-..|=|.--. ++ -.+|+.|+..-.||..+
T Consensus 386 nd~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry~~eiQqKnksvsqclEmdk~LskKeeeverL 465 (527)
T PF15066_consen 386 NDIEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQERYMTEIQQKNKSVSQCLEMDKTLSKKEEEVERL 465 (527)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHHHHHH
Confidence 566777888888888888776521 1222222222111111 11 12445555555555443
Q ss_pred hhh---h-hhhhhhhhhhhhhhhhhHHHHHHHHhhh
Q psy14534 110 EFG---V-AQINSTLQVVNETRESDANYLKSTVSTL 141 (423)
Q Consensus 110 e~~---l-~q~ts~l~~~~Ee~~n~s~~i~s~~~si 141 (423)
... + +-|+|-|..+++|-++.-++.-|.-+..
T Consensus 466 Q~lkgelEkat~SALdlLkrEKe~~EqefLslqeEf 501 (527)
T PF15066_consen 466 QQLKGELEKATTSALDLLKREKETREQEFLSLQEEF 501 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 321 1 2344677777777766666666655543
No 103
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=85.38 E-value=8.9 Score=35.52 Aligned_cols=33 Identities=21% Similarity=0.345 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHH
Q psy14534 28 EQHVINHKMKTLQAINEEILQRISHLETSSQTN 60 (423)
Q Consensus 28 ~~~~~~~~~~~l~~~~~~~~~r~~~~e~~~~~l 60 (423)
+......+++.+++....+++++..++.+...+
T Consensus 82 e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~ 114 (191)
T PF04156_consen 82 ELSELQQQLQQLQEELDQLQERIQELESELEKL 114 (191)
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444443333
No 104
>COG1561 Uncharacterized stress-induced protein [Function unknown]
Probab=85.29 E-value=14 Score=37.63 Aligned_cols=61 Identities=23% Similarity=0.246 Sum_probs=40.1
Q ss_pred hhHHHHHHhhhhhhhhhhhhh--------------hhhhhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHH
Q psy14534 100 PTIQREISKLEFGVAQINSTL--------------QVVNETRESDANYLKSTVSTLATLQEKVEANNIIMQALSDANYL 164 (423)
Q Consensus 100 p~~~~EI~e~e~~l~q~ts~l--------------~~~~Ee~~n~s~~i~s~~~sis~lqek~~~~~kv~~le~Q~~~I 164 (423)
.+|+.||..++-+++++..-| |..|.|. ..|.||+.+..--.--++++.-|+|+.+|+.+|
T Consensus 215 ~DI~EEldRL~sHv~~~~~iL~~~g~vGRkLDFl~QE~nREa----NTl~SKS~~~~it~~~vElK~~IEqmREQVQNi 289 (290)
T COG1561 215 ADIAEELDRLKSHVKEFRNILEKGGPVGRKLDFLMQEFNREA----NTLGSKSNAAEITAAVVELKVLIEQMREQVQNI 289 (290)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhcCCccchhHHHHHHHHhHHH----HhhhhccchHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 367788888887777777666 5556554 556666665433445566666777777777655
No 105
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=85.17 E-value=71 Score=37.05 Aligned_cols=9 Identities=33% Similarity=0.719 Sum_probs=5.9
Q ss_pred cccCCCCcc
Q psy14534 279 QGFGSPESE 287 (423)
Q Consensus 279 ~GFG~~~gE 287 (423)
.|||+++.|
T Consensus 849 Epf~~LD~e 857 (908)
T COG0419 849 EPFGTLDEE 857 (908)
T ss_pred CCCCCCCHH
Confidence 577777654
No 106
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=85.07 E-value=30 Score=37.71 Aligned_cols=33 Identities=21% Similarity=0.233 Sum_probs=12.4
Q ss_pred hhhhhhhhhhhhhhhHHHHHHHHhhhHHHHHHH
Q psy14534 116 INSTLQVVNETRESDANYLKSTVSTLATLQEKV 148 (423)
Q Consensus 116 ~ts~l~~~~Ee~~n~s~~i~s~~~sis~lqek~ 148 (423)
+-++|...+.++..+..........|+.|+.++
T Consensus 314 L~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL 346 (522)
T PF05701_consen 314 LRSELEKEKEELERLKEREKEASSEVSSLEAEL 346 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHH
Confidence 333333333333333333333333343444333
No 107
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=84.74 E-value=45 Score=34.30 Aligned_cols=64 Identities=13% Similarity=0.148 Sum_probs=38.4
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHhhhcchh--HHHHHH---hhhhhhhhhhhhhhhhhhhhhhhHHHHHH
Q psy14534 73 GVEHLHSSMMELLESIETIENKVDYNLPT--IQREIS---KLEFGVAQINSTLQVVNETRESDANYLKS 136 (423)
Q Consensus 73 ~~~k~~~s~~el~e~ve~~~~~~d~~ip~--~~~EI~---e~e~~l~q~ts~l~~~~Ee~~n~s~~i~s 136 (423)
-+++|..+|..|......|+.+.+..++. --+.|. .......+.++.+..++.|+.-++.++.+
T Consensus 179 lvN~L~Kqm~~l~~eKr~Lq~~l~~~~s~~~s~~d~~~~~~~~Dt~e~~~shI~~Lr~EV~RLR~qL~~ 247 (310)
T PF09755_consen 179 LVNRLWKQMDKLEAEKRRLQEKLEQPVSAPPSPRDTVNVSEENDTAERLSSHIRSLRQEVSRLRQQLAA 247 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccccCCCCCcchHHhhcccCCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777778888888888753322 223332 33344456667777777777666555543
No 108
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=84.50 E-value=31 Score=33.54 Aligned_cols=40 Identities=18% Similarity=0.316 Sum_probs=19.8
Q ss_pred HHHHHHhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhh
Q psy14534 102 IQREISKLEFGVAQINSTLQVVNETRESDANYLKSTVSTL 141 (423)
Q Consensus 102 ~~~EI~e~e~~l~q~ts~l~~~~Ee~~n~s~~i~s~~~si 141 (423)
++.|+.+.+..+..+-..+...+++++..+..+...-+.+
T Consensus 61 ~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l 100 (302)
T PF10186_consen 61 LKREIEELRERLERLRERIERLRKRIEQKRERLEELRESL 100 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555455444555544444444444444
No 109
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=84.25 E-value=62 Score=34.45 Aligned_cols=91 Identities=14% Similarity=0.158 Sum_probs=46.9
Q ss_pred hhhhhhHHHHHHHHHHHHHHhhhcchhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhhHHHHHHHHH-HHH
Q psy14534 75 EHLHSSMMELLESIETIENKVDYNLPTIQREISKLEFGVAQINSTLQVVNETRESDANYLKSTVSTLATLQEKVEA-NNI 153 (423)
Q Consensus 75 ~k~~~s~~el~e~ve~~~~~~d~~ip~~~~EI~e~e~~l~q~ts~l~~~~Ee~~n~s~~i~s~~~sis~lqek~~~-~~k 153 (423)
.-|+...++|.---+.+|... +++-.-.+-|.-.+++|+...+.++...-++......|..+...|+.-.|.+.. .++
T Consensus 182 ~Qlk~~~~~L~~r~~~ieQ~~-~~la~r~~a~q~r~~ela~r~aa~Qq~~q~i~qrd~~i~q~~q~iaar~e~I~~re~~ 260 (499)
T COG4372 182 TQLKSQVLDLKLRSAQIEQEA-QNLATRANAAQARTEELARRAAAAQQTAQAIQQRDAQISQKAQQIAARAEQIRERERQ 260 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 344555556655555555544 556555666666666666666666555555555555555444444444444333 122
Q ss_pred HHHHHhhHHHHHH
Q psy14534 154 IMQALSDANYLKS 166 (423)
Q Consensus 154 v~~le~Q~~~I~~ 166 (423)
+..+|++...+..
T Consensus 261 lq~lEt~q~~leq 273 (499)
T COG4372 261 LQRLETAQARLEQ 273 (499)
T ss_pred HHHHHHHHHHHHH
Confidence 2234444444433
No 110
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=84.17 E-value=41 Score=40.31 Aligned_cols=22 Identities=14% Similarity=0.246 Sum_probs=9.8
Q ss_pred HHHhhHHHHHHHHHHHHHHHHH
Q psy14534 20 KTKHHLEKEQHVINHKMKTLQA 41 (423)
Q Consensus 20 ~~~~~le~~~~~~~~~~~~l~~ 41 (423)
.++..+......+..+++.++.
T Consensus 313 ~~~~~~~~~l~~~~~~L~~i~~ 334 (1201)
T PF12128_consen 313 KELSALNADLARIKSELDEIEQ 334 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444433
No 111
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=84.12 E-value=40 Score=32.22 Aligned_cols=40 Identities=5% Similarity=0.018 Sum_probs=22.1
Q ss_pred hhhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhhHHHHHHH
Q psy14534 109 LEFGVAQINSTLQVVNETRESDANYLKSTVSTLATLQEKV 148 (423)
Q Consensus 109 ~e~~l~q~ts~l~~~~Ee~~n~s~~i~s~~~sis~lqek~ 148 (423)
....|+.+-+.+..+.++++++..+-..+-.....++..+
T Consensus 84 dK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~Er 123 (201)
T PF13851_consen 84 DKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQER 123 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555556666666666666666555555554444433
No 112
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=83.88 E-value=65 Score=37.11 Aligned_cols=46 Identities=20% Similarity=0.229 Sum_probs=22.5
Q ss_pred HHHHHHhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhhHHHHHH
Q psy14534 102 IQREISKLEFGVAQINSTLQVVNETRESDANYLKSTVSTLATLQEK 147 (423)
Q Consensus 102 ~~~EI~e~e~~l~q~ts~l~~~~Ee~~n~s~~i~s~~~sis~lqek 147 (423)
.+.||.++...+..+-.++..+...|.|+...+..+...+..+.++
T Consensus 376 ~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~~k~R 421 (775)
T PF10174_consen 376 LQGEIEDLRDMLDKKERKINVLQKKIENLEEQLREKDRQLDEEKER 421 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555555555444444333333
No 113
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=83.85 E-value=9.2 Score=32.48 Aligned_cols=93 Identities=10% Similarity=0.192 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhHHHH---HHhhccccccchhhhhhhhHHHHHHHHHHHHHHhhhcchhHHHHHHhhhhh
Q psy14534 36 MKTLQAINEEILQRISHLETSSQTNV---KTLFNITKQISGVEHLHSSMMELLESIETIENKVDYNLPTIQREISKLEFG 112 (423)
Q Consensus 36 ~~~l~~~~~~~~~r~~~~e~~~~~l~---~~~~n~s~q~~~~~k~~~s~~el~e~ve~~~~~~d~~ip~~~~EI~e~e~~ 112 (423)
++.|++..+.+...+..|+.++++.. +++..+. +-..+.+.=|.++ ++..+|..+|.+...+..++..
T Consensus 8 ~q~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL~~l~-~d~~vy~~VG~vf--------v~~~~~ea~~~Le~~~e~le~~ 78 (105)
T cd00632 8 LQQLQQQLQAYIVQRQKVEAQLNENKKALEELEKLA-DDAEVYKLVGNVL--------VKQEKEEARTELKERLETIELR 78 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CcchHHHHhhhHH--------hhccHHHHHHHHHHHHHHHHHH
Confidence 44455555555666666666665543 3333332 1222223333332 2334445556666666666666
Q ss_pred hhhhhhhhhhhhhhhhhhHHHHHHH
Q psy14534 113 VAQINSTLQVVNETRESDANYLKST 137 (423)
Q Consensus 113 l~q~ts~l~~~~Ee~~n~s~~i~s~ 137 (423)
+++++..+..+.+++.+++..|..+
T Consensus 79 i~~l~~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 79 IKRLERQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666666555543
No 114
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=83.83 E-value=12 Score=39.02 Aligned_cols=50 Identities=14% Similarity=0.350 Sum_probs=33.5
Q ss_pred ccccccchhhhhhhhHHHHHHHHHHHHHHhhhcchhHHHHHHhhhhhhhhhhhh
Q psy14534 66 NITKQISGVEHLHSSMMELLESIETIENKVDYNLPTIQREISKLEFGVAQINST 119 (423)
Q Consensus 66 n~s~q~~~~~k~~~s~~el~e~ve~~~~~~d~~ip~~~~EI~e~e~~l~q~ts~ 119 (423)
.+..+|.+|..||..+.+..+.+..||... .++..+|++-+..|.+....
T Consensus 316 ~lv~RL~tL~~lH~~a~~~~~~l~~le~~q----~~l~~~l~~~~~~L~~ve~~ 365 (388)
T PF04912_consen 316 SLVERLKTLKSLHEEAAEFSQTLSELESQQ----SDLQSQLKKWEELLNKVEEK 365 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 344667778888888877777766665544 56667777777666665555
No 115
>KOG0612|consensus
Probab=83.64 E-value=52 Score=39.42 Aligned_cols=21 Identities=19% Similarity=0.270 Sum_probs=10.5
Q ss_pred HHHhhHHHHHHHHHHHHHHHH
Q psy14534 20 KTKHHLEKEQHVINHKMKTLQ 40 (423)
Q Consensus 20 ~~~~~le~~~~~~~~~~~~l~ 40 (423)
+..++|+.++..+.-+..+|+
T Consensus 465 ~~~keL~e~i~~lk~~~~el~ 485 (1317)
T KOG0612|consen 465 EMDKELEETIEKLKSEESELQ 485 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555544444444
No 116
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=83.57 E-value=72 Score=35.99 Aligned_cols=24 Identities=8% Similarity=0.133 Sum_probs=13.3
Q ss_pred hhHHHHHhhHHHHHHHHHHHHHHH
Q psy14534 16 KLFLKTKHHLEKEQHVINHKMKTL 39 (423)
Q Consensus 16 ~~~~~~~~~le~~~~~~~~~~~~l 39 (423)
.|+.+||..+..+.....+++...
T Consensus 197 ~~L~~ql~~l~~~l~~aE~~l~~f 220 (754)
T TIGR01005 197 DFLAPEIADLSKQSRDAEAEVAAY 220 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666555555555555444
No 117
>KOG0996|consensus
Probab=83.46 E-value=68 Score=38.41 Aligned_cols=38 Identities=16% Similarity=0.213 Sum_probs=22.2
Q ss_pred cccCCceEEEEEecCC--ccccccChHhhccccCCCCccccccchhhh
Q psy14534 251 LCDEHHWMTIQRRYNG--MQEFNLKWTDYAQGFGSPESEFWIGNDALH 296 (423)
Q Consensus 251 ~Cd~~GWTVIQrR~dG--sv~FnR~W~eY~~GFG~~~gEfWLGLe~ih 296 (423)
+|-.=-..|++.=-.+ -++|-+. |.-|+ -=|++||+|-
T Consensus 639 ac~~LdyiVVdt~e~aq~cI~fl~~---~nLgr-----aTFi~LDki~ 678 (1293)
T KOG0996|consen 639 ACARLDYIVVDTIETAQECINFLKK---NNLGR-----ATFIILDKIK 678 (1293)
T ss_pred hccccceEEeccHHHHHHHHHHHHH---cCCCc-----eeEEehHhhh
Confidence 6654457787755443 2456553 33333 4479999886
No 118
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=83.34 E-value=48 Score=32.54 Aligned_cols=32 Identities=22% Similarity=0.290 Sum_probs=16.3
Q ss_pred HHHHhhhhhhhhhHHHHHHhhccccccchhhh
Q psy14534 45 EILQRISHLETSSQTNVKTLFNITKQISGVEH 76 (423)
Q Consensus 45 ~~~~r~~~~e~~~~~l~~~~~n~s~q~~~~~k 76 (423)
+...|...|+...+.+...|..+-.++..+..
T Consensus 84 ~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~ 115 (264)
T PF06008_consen 84 RTLQRAQDLEQFIQNLQDNIQELIEQVESLNE 115 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 34445555555555555555555555544444
No 119
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=83.24 E-value=63 Score=33.82 Aligned_cols=69 Identities=12% Similarity=0.197 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHhhhcchhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhhHHHHHHHHH
Q psy14534 82 MELLESIETIENKVDYNLPTIQREISKLEFGVAQINSTLQVVNETRESDANYLKSTVSTLATLQEKVEA 150 (423)
Q Consensus 82 ~el~e~ve~~~~~~d~~ip~~~~EI~e~e~~l~q~ts~l~~~~Ee~~n~s~~i~s~~~sis~lqek~~~ 150 (423)
.+|.......+.+|.+-|-+.+..-.++|..+.++.-++.....++..+...|..|..-++-.|.+.+.
T Consensus 236 ~dl~~Q~~~vn~al~~Ri~et~~ak~~Le~ql~~~~~ei~~~e~~i~~L~~ai~~k~~~lkvaqTRL~~ 304 (384)
T PF03148_consen 236 NDLRAQADAVNAALRKRIHETQEAKNELEWQLKKTLQEIAEMEKNIEDLEKAIRDKEGPLKVAQTRLEN 304 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhh
Confidence 366666677778888888888999999999999999999999999999999999999988778887763
No 120
>KOG4674|consensus
Probab=83.12 E-value=70 Score=40.03 Aligned_cols=22 Identities=14% Similarity=0.164 Sum_probs=10.4
Q ss_pred HHhhHHHHHHHHHHHHHHHHHH
Q psy14534 157 ALSDANYLKSTVSTLATLQEKV 178 (423)
Q Consensus 157 le~Q~~~I~~l~~~v~~~~~ql 178 (423)
|+.++..++.-+..+.+..+.+
T Consensus 222 L~~~L~~~~~~~~~~q~~~~~l 243 (1822)
T KOG4674|consen 222 LEEKLSDLKESLAELQEKNKSL 243 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555544444444444443
No 121
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=82.79 E-value=41 Score=31.31 Aligned_cols=98 Identities=15% Similarity=0.235 Sum_probs=51.6
Q ss_pred HHHHHhhhhhhhhhHHHHHHhhccccccchhhhhhhhHHH-HHHHHHHHHHHhhhcchhHHHHHHh------hhhhhh-h
Q psy14534 44 EEILQRISHLETSSQTNVKTLFNITKQISGVEHLHSSMME-LLESIETIENKVDYNLPTIQREISK------LEFGVA-Q 115 (423)
Q Consensus 44 ~~~~~r~~~~e~~~~~l~~~~~n~s~q~~~~~k~~~s~~e-l~e~ve~~~~~~d~~ip~~~~EI~e------~e~~l~-q 115 (423)
+.+...|..+-.....|+++..+.-+. -+..+|.-+++ +..-++.+...+ +.++....++.- .|.-|. +
T Consensus 27 ~~l~~ai~~~~~~~~~LkGka~dsiK~--y~~~vh~pll~~~~~~~~~~~~~l-~~~~~~~~~vd~~~~a~i~e~~L~~e 103 (204)
T PF04740_consen 27 ESLQKAINQFISSESSLKGKAYDSIKN--YFSEVHIPLLQGLILLLEEYQEAL-KFIKDFQSEVDSSSNAIIDEDFLESE 103 (204)
T ss_pred HHHHHHHHHHHcCcchhhhHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHcccccccccHHHHHHH
Confidence 334444444444444466555554332 34455666653 333346666666 666666666641 133333 4
Q ss_pred hhhhhhhhhhhhhhhHHHHHHHHhhhHHH
Q psy14534 116 INSTLQVVNETRESDANYLKSTVSTLATL 144 (423)
Q Consensus 116 ~ts~l~~~~Ee~~n~s~~i~s~~~sis~l 144 (423)
+-..+....+.+..+...+++...+|+.+
T Consensus 104 l~~~l~~~~~~~~~~~~~~~~~~~~vsdi 132 (204)
T PF04740_consen 104 LKKKLNQLKEQIEDLQDEINSILSSVSDI 132 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccchHHH
Confidence 44555555556666666666666665555
No 122
>KOG0933|consensus
Probab=82.30 E-value=46 Score=39.21 Aligned_cols=49 Identities=16% Similarity=0.148 Sum_probs=24.9
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHH----HHHHHhhhhhhhhhHHHHHHhhccc
Q psy14534 20 KTKHHLEKEQHVINHKMKTLQAIN----EEILQRISHLETSSQTNVKTLFNIT 68 (423)
Q Consensus 20 ~~~~~le~~~~~~~~~~~~l~~~~----~~~~~r~~~~e~~~~~l~~~~~n~s 68 (423)
++|+..++.++.-......+++.+ ..+.-|++.|+.+.+.++.++.-.+
T Consensus 755 ~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~e~~~ 807 (1174)
T KOG0933|consen 755 QQIKEKERALKKCEDKISTLEKKMKDAKANRERRLKDLEKEIKTAKQRAEESS 807 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444555533 2355567777766666654444333
No 123
>KOG0994|consensus
Probab=81.96 E-value=1.2e+02 Score=36.61 Aligned_cols=12 Identities=17% Similarity=0.149 Sum_probs=5.0
Q ss_pred HHHhhHHHHHHH
Q psy14534 20 KTKHHLEKEQHV 31 (423)
Q Consensus 20 ~~~~~le~~~~~ 31 (423)
+||.+|--++..
T Consensus 1511 eqi~~L~~~I~e 1522 (1758)
T KOG0994|consen 1511 EQIQQLTGEIQE 1522 (1758)
T ss_pred HHHHHHHHHHHH
Confidence 344444444433
No 124
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=81.64 E-value=77 Score=36.51 Aligned_cols=34 Identities=15% Similarity=0.188 Sum_probs=20.8
Q ss_pred HHHHHHhhhhhhhhhHHHHHHhhccccccchhhh
Q psy14534 43 NEEILQRISHLETSSQTNVKTLFNITKQISGVEH 76 (423)
Q Consensus 43 ~~~~~~r~~~~e~~~~~l~~~~~n~s~q~~~~~k 76 (423)
++.+-+.++..|...+.|.+.|-|+..++...++
T Consensus 380 i~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ 413 (775)
T PF10174_consen 380 IEDLRDMLDKKERKINVLQKKIENLEEQLREKDR 413 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666666666666666666655554443
No 125
>KOG0976|consensus
Probab=81.05 E-value=1.2e+02 Score=35.36 Aligned_cols=19 Identities=21% Similarity=0.377 Sum_probs=9.8
Q ss_pred hHHHHHhhHHHHHHHHHHH
Q psy14534 17 LFLKTKHHLEKEQHVINHK 35 (423)
Q Consensus 17 ~~~~~~~~le~~~~~~~~~ 35 (423)
++.++++++++.+..|.-.
T Consensus 96 llEddlk~~~sQiriLQn~ 114 (1265)
T KOG0976|consen 96 LLEDDLKHHESQIRILQNK 114 (1265)
T ss_pred HhHHHHHHHHHHHHHHHHH
Confidence 3445555555555554333
No 126
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=80.98 E-value=9.1 Score=33.97 Aligned_cols=67 Identities=15% Similarity=0.263 Sum_probs=30.2
Q ss_pred HHHHHhhhhhhhhhHHHHHHhhccccccchhhhhhhhHHHHHHHHHHHHHHhhhcchhHHHHHHhhhhhhh
Q psy14534 44 EEILQRISHLETSSQTNVKTLFNITKQISGVEHLHSSMMELLESIETIENKVDYNLPTIQREISKLEFGVA 114 (423)
Q Consensus 44 ~~~~~r~~~~e~~~~~l~~~~~n~s~q~~~~~k~~~s~~el~e~ve~~~~~~d~~ip~~~~EI~e~e~~l~ 114 (423)
+++.-.||.+|.+...++.++..+.. .-+.+-.-++.|....+.+.... ..+|.++.++++++....
T Consensus 19 e~L~s~lr~~E~E~~~l~~el~~l~~---~r~~l~~Eiv~l~~~~e~~~~~~-~~~~~L~~el~~l~~ry~ 85 (120)
T PF12325_consen 19 ERLQSQLRRLEGELASLQEELARLEA---ERDELREEIVKLMEENEELRALK-KEVEELEQELEELQQRYQ 85 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444443332 12333334444444444444333 455566666665555433
No 127
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=80.94 E-value=72 Score=35.36 Aligned_cols=25 Identities=12% Similarity=0.090 Sum_probs=11.7
Q ss_pred hhhHHHHHhhHHHHHHHHHHHHHHH
Q psy14534 15 GKLFLKTKHHLEKEQHVINHKMKTL 39 (423)
Q Consensus 15 ~~~~~~~~~~le~~~~~~~~~~~~l 39 (423)
-+-.++++..++.+......+.+-|
T Consensus 166 w~~~~~~l~~~~~~~~e~~~~~d~L 190 (557)
T COG0497 166 WKQARRELEDLQEKERERAQRADLL 190 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555554444443333
No 128
>PF13166 AAA_13: AAA domain
Probab=80.83 E-value=98 Score=34.39 Aligned_cols=10 Identities=20% Similarity=0.551 Sum_probs=3.8
Q ss_pred hHHHHHHhhh
Q psy14534 101 TIQREISKLE 110 (423)
Q Consensus 101 ~~~~EI~e~e 110 (423)
.++.++.++.
T Consensus 388 ~~~~~~~~~~ 397 (712)
T PF13166_consen 388 NLKKEQNELK 397 (712)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 129
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=80.77 E-value=10 Score=40.03 Aligned_cols=68 Identities=18% Similarity=0.172 Sum_probs=47.2
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHhhhcchhHHHHHHhhhhhhh-----------hhhhhhhhhhhhhhhhHHHHHHHHhh
Q psy14534 73 GVEHLHSSMMELLESIETIENKVDYNLPTIQREISKLEFGVA-----------QINSTLQVVNETRESDANYLKSTVST 140 (423)
Q Consensus 73 ~~~k~~~s~~el~e~ve~~~~~~d~~ip~~~~EI~e~e~~l~-----------q~ts~l~~~~Ee~~n~s~~i~s~~~s 140 (423)
.+.++++-+.|+.+....|++++|+.-.++++|++-.-+.|- |.+-.+..-.-|+-|++.++++|.+.
T Consensus 213 ~l~~~~~el~eik~~~~~L~~~~e~Lk~~~~~e~~~~~~~LqEEr~R~erLEeqlNd~~elHq~Ei~~LKqeLa~~EEK 291 (395)
T PF10267_consen 213 GLQKILEELREIKESQSRLEESIEKLKEQYQREYQFILEALQEERYRYERLEEQLNDLTELHQNEIYNLKQELASMEEK 291 (395)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 566777778899999999999998888888888876555444 33333345555666666666666654
No 130
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=80.76 E-value=95 Score=34.17 Aligned_cols=22 Identities=27% Similarity=0.397 Sum_probs=10.1
Q ss_pred hhhhhhhHHHHHHHHHHHHHHh
Q psy14534 74 VEHLHSSMMELLESIETIENKV 95 (423)
Q Consensus 74 ~~k~~~s~~el~e~ve~~~~~~ 95 (423)
+++++.+.-+|...++.+...+
T Consensus 315 l~~~~~~~~~l~~e~~~v~~sY 336 (560)
T PF06160_consen 315 LEHAKEQNKELKEELERVSQSY 336 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3444444444444444444444
No 131
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=80.72 E-value=58 Score=34.56 Aligned_cols=17 Identities=24% Similarity=0.212 Sum_probs=6.7
Q ss_pred HHHHhhhhhhhhhHHHH
Q psy14534 45 EILQRISHLETSSQTNV 61 (423)
Q Consensus 45 ~~~~r~~~~e~~~~~l~ 61 (423)
.+++++..++.+...+.
T Consensus 176 ~~~~~i~~~~~~~~~~~ 192 (457)
T TIGR01000 176 QLDQQISKTDQKLQDYQ 192 (457)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444433333
No 132
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=80.33 E-value=41 Score=29.76 Aligned_cols=59 Identities=12% Similarity=0.177 Sum_probs=24.4
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhccccccchhhhhhhhHHHHH
Q psy14534 20 KTKHHLEKEQHVINHKMKTLQAINEEILQRISHLETSSQTNVKTLFNITKQISGVEHLHSSMMELL 85 (423)
Q Consensus 20 ~~~~~le~~~~~~~~~~~~l~~~~~~~~~r~~~~e~~~~~l~~~~~n~s~q~~~~~k~~~s~~el~ 85 (423)
.++..|+.+...+......+ ...+......++........+-.|-.+.| -.|+..++-|
T Consensus 3 ~e~~~l~~e~~~~~~~~~~~---~~~~~~~~~dl~~q~~~a~~Aq~~YE~El----~~Ha~~~~~L 61 (132)
T PF07926_consen 3 SELSSLQSELQRLKEQEEDA---EEQLQSLREDLESQAKIAQEAQQKYEREL----VKHAEDIKEL 61 (132)
T ss_pred hHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhHHHHHHH
Confidence 44455554444433333332 11222233344444444444444444444 2455444333
No 133
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=79.99 E-value=8.5 Score=36.27 Aligned_cols=19 Identities=16% Similarity=0.207 Sum_probs=0.0
Q ss_pred HHHHHhhhhhhhhhHHHHH
Q psy14534 44 EEILQRISHLETSSQTNVK 62 (423)
Q Consensus 44 ~~~~~r~~~~e~~~~~l~~ 62 (423)
.++.+|+..|+.+...|..
T Consensus 27 ~~L~d~~~~l~~~~~~l~~ 45 (194)
T PF08614_consen 27 NRLADRTSLLKAENEQLQP 45 (194)
T ss_dssp -------------------
T ss_pred ccccccccccccccccccc
Confidence 4678888888877666654
No 134
>PF03234 CDC37_N: Cdc37 N terminal kinase binding; InterPro: IPR013855 In Saccharomyces cerevisiae (Baker's yeast), cell division control protein Cdc37 is required for the productive formation of Cdc28-cyclin complexes. Cdc37 may be a kinase targeting subunit of Hsp90 [].
Probab=79.95 E-value=10 Score=35.84 Aligned_cols=107 Identities=12% Similarity=0.139 Sum_probs=49.1
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh----HHHHHHhhc-c--------ccccchhhhhhhhHHHHHHH
Q psy14534 21 TKHHLEKEQHVINHKMKTLQAINEEILQRISHLETSS----QTNVKTLFN-I--------TKQISGVEHLHSSMMELLES 87 (423)
Q Consensus 21 ~~~~le~~~~~~~~~~~~l~~~~~~~~~r~~~~e~~~----~~l~~~~~n-~--------s~q~~~~~k~~~s~~el~e~ 87 (423)
+..+....+..|..++....+...++..+|..++... ..+...... . -......-..+.-|..||+.
T Consensus 40 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~e~~~~~~~~~~~p~y~~Mi~~L~~q 119 (177)
T PF03234_consen 40 RREERKQEIEELKYERKINEKLLKRIQKLLSALDKEEEADKQEVMESLNEPFDKKEKPGVENKDPEQPTYDEMIEDLLDQ 119 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHhcccccccccccccCCCCCCCHHHHHHHHHHH
Confidence 3344444455555555555555556666665555542 222211111 1 11112233344555677777
Q ss_pred HHHHHHHhhhcchh--HHHHHHhhhhhhhhhhhhhhhhhhhhhhhHHHH
Q psy14534 88 IETIENKVDYNLPT--IQREISKLEFGVAQINSTLQVVNETRESDANYL 134 (423)
Q Consensus 88 ve~~~~~~d~~ip~--~~~EI~e~e~~l~q~ts~l~~~~Ee~~n~s~~i 134 (423)
|.. .+++ -..+++++...++++....+....++..+..+-
T Consensus 120 vk~-------~~de~~~~~~~~~l~~H~~kl~~~~ke~~~kLeeLekEe 161 (177)
T PF03234_consen 120 VKK-------EPDEKSGKAELEELQEHRAKLEKEQKELKKKLEELEKEE 161 (177)
T ss_pred Hhc-------ccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 721 2222 455555555555555555554444444444433
No 135
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=79.85 E-value=66 Score=35.03 Aligned_cols=64 Identities=13% Similarity=0.136 Sum_probs=31.0
Q ss_pred chhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHH
Q psy14534 99 LPTIQREISKLEFGVAQINSTLQVVNETRESDANYLKSTVSTLATLQEKVEANNIIMQALSDANYLK 165 (423)
Q Consensus 99 ip~~~~EI~e~e~~l~q~ts~l~~~~Ee~~n~s~~i~s~~~sis~lqek~~~~~kv~~le~Q~~~I~ 165 (423)
+..++.||.+.|++++-+-+....++-.+.+..-++. -.+.+ -+|+.++.+.+..+..|.+.|.
T Consensus 332 l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e-~fe~m--n~Ere~L~reL~~i~~~~~~L~ 395 (622)
T COG5185 332 LEKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTE-QFELM--NQEREKLTRELDKINIQSDKLT 395 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHH-HHHHH--HHHHHHHHHHHHHhcchHHHHH
Confidence 3556777777777665544444433333333222111 11222 3556666665554444444443
No 136
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=79.84 E-value=43 Score=29.65 Aligned_cols=26 Identities=15% Similarity=0.130 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhHHHH
Q psy14534 36 MKTLQAINEEILQRISHLETSSQTNV 61 (423)
Q Consensus 36 ~~~l~~~~~~~~~r~~~~e~~~~~l~ 61 (423)
++.|+....++..++...+.....+.
T Consensus 5 ~~~l~~e~~~~~~~~~~~~~~~~~~~ 30 (132)
T PF07926_consen 5 LSSLQSELQRLKEQEEDAEEQLQSLR 30 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33343333444444444444333333
No 137
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=79.77 E-value=99 Score=33.76 Aligned_cols=45 Identities=16% Similarity=0.195 Sum_probs=18.0
Q ss_pred HHHHHHhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhhHHHHH
Q psy14534 102 IQREISKLEFGVAQINSTLQVVNETRESDANYLKSTVSTLATLQE 146 (423)
Q Consensus 102 ~~~EI~e~e~~l~q~ts~l~~~~Ee~~n~s~~i~s~~~sis~lqe 146 (423)
++.|+.+...+|.+++.++..++-.+..+..+|...-..+..+++
T Consensus 286 ~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke 330 (522)
T PF05701_consen 286 AKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKE 330 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443334344443333333333333
No 138
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=79.65 E-value=1.1e+02 Score=34.31 Aligned_cols=74 Identities=19% Similarity=0.289 Sum_probs=41.5
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhccccc-----cchhh-hhhhhHHHHHHHHHHHHHHh
Q psy14534 22 KHHLEKEQHVINHKMKTLQAINEEILQRISHLETSSQTNVKTLFNITKQ-----ISGVE-HLHSSMMELLESIETIENKV 95 (423)
Q Consensus 22 ~~~le~~~~~~~~~~~~l~~~~~~~~~r~~~~e~~~~~l~~~~~n~s~q-----~~~~~-k~~~s~~el~e~ve~~~~~~ 95 (423)
...+.-++..+..++..|.+.-++.-.||..||..+..|.+.+.-...+ .+-.+ .+..-+-.|.+.++.|+.++
T Consensus 24 ~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~~~pa~pse~E~~Lq~E~~~L~kElE~L~~ql 103 (617)
T PF15070_consen 24 SAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPPPPEPPAGPSEVEQQLQAEAEHLRKELESLEEQL 103 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566666666665555566677888888877777766654311 11111 23334444555555555544
No 139
>KOG0933|consensus
Probab=79.56 E-value=25 Score=41.30 Aligned_cols=50 Identities=16% Similarity=0.270 Sum_probs=22.3
Q ss_pred chhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhhHHHHHHH
Q psy14534 99 LPTIQREISKLEFGVAQINSTLQVVNETRESDANYLKSTVSTLATLQEKV 148 (423)
Q Consensus 99 ip~~~~EI~e~e~~l~q~ts~l~~~~Ee~~n~s~~i~s~~~sis~lqek~ 148 (423)
+++++.||+...-.+..+-.+|+....+....+..-..-.+.+..+|+.+
T Consensus 408 ~~~~~t~~k~a~~k~e~~~~elk~~e~e~~t~~~~~~~~~~~ld~~q~ev 457 (1174)
T KOG0933|consen 408 LSEASTEIKQAKLKLEHLRKELKLREGELATASAEYVKDIEELDALQNEV 457 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHHHHHHHHHHHHHHHHH
Confidence 34444555544444444444444444444444444333344444444444
No 140
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=79.55 E-value=59 Score=31.06 Aligned_cols=10 Identities=10% Similarity=0.245 Sum_probs=4.7
Q ss_pred hhhHHHHHhh
Q psy14534 15 GKLFLKTKHH 24 (423)
Q Consensus 15 ~~~~~~~~~~ 24 (423)
+|++.++++.
T Consensus 4 ~rvlSar~~k 13 (194)
T PF15619_consen 4 QRVLSARLHK 13 (194)
T ss_pred HHHHHhhHHH
Confidence 4555554443
No 141
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=79.48 E-value=1.2e+02 Score=34.37 Aligned_cols=21 Identities=14% Similarity=0.366 Sum_probs=9.7
Q ss_pred chhHHHHHHhhhhhhhhhhhh
Q psy14534 99 LPTIQREISKLEFGVAQINST 119 (423)
Q Consensus 99 ip~~~~EI~e~e~~l~q~ts~ 119 (423)
+.+++.++.+++.++++....
T Consensus 290 i~~L~~~l~~l~~~~~~l~~~ 310 (754)
T TIGR01005 290 IQRLRERQAELRATIADLSTT 310 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 334445555555544444443
No 142
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=79.46 E-value=78 Score=32.37 Aligned_cols=140 Identities=13% Similarity=0.196 Sum_probs=0.0
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhccccccchhhhhhhhHHHHHHHHHHHHHHhhh
Q psy14534 18 FLKTKHHLEKEQHVINHKMKTLQAINEEILQRISHLETSSQTNVKTLFNITKQISGVEHLHSSMMELLESIETIENKVDY 97 (423)
Q Consensus 18 ~~~~~~~le~~~~~~~~~~~~l~~~~~~~~~r~~~~e~~~~~l~~~~~n~s~q~~~~~k~~~s~~el~e~ve~~~~~~d~ 97 (423)
|-++|.+|++.......++..- ....++...++.+-.....+.+++.-++.++ +..|..|.++|+...
T Consensus 136 lvq~I~~L~k~le~~~k~~e~~-~~~~el~aei~~lk~~~~e~~eki~~la~ea---qe~he~m~k~~~~~D-------- 203 (294)
T COG1340 136 LVQKIKELRKELEDAKKALEEN-EKLKELKAEIDELKKKAREIHEKIQELANEA---QEYHEEMIKLFEEAD-------- 203 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH--------
Q ss_pred cchhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q psy14534 98 NLPTIQREISKLEFGVAQINSTLQVVNETRESDANYLKSTVSTLATLQEKVEANNIIMQALSDANYLKSTVSTLA 172 (423)
Q Consensus 98 ~ip~~~~EI~e~e~~l~q~ts~l~~~~Ee~~n~s~~i~s~~~sis~lqek~~~~~kv~~le~Q~~~I~~l~~~v~ 172 (423)
+++.++.+.-..+-+.......+.+++.++...|.....-+..|+.+--.-+.....++-......+...+.
T Consensus 204 ---e~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~~k~ik~l~~~~~~~~~~~~~ee~kera~ei~EKfk 275 (294)
T COG1340 204 ---ELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELEKKIKALRAKEKAAKRREKREELKERAEEIYEKFK 275 (294)
T ss_pred ---HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 143
>KOG4593|consensus
Probab=79.36 E-value=1.2e+02 Score=34.47 Aligned_cols=54 Identities=22% Similarity=0.323 Sum_probs=42.0
Q ss_pred HHHHHHHhhhcchhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhh
Q psy14534 88 IETIENKVDYNLPTIQREISKLEFGVAQINSTLQVVNETRESDANYLKSTVSTL 141 (423)
Q Consensus 88 ve~~~~~~d~~ip~~~~EI~e~e~~l~q~ts~l~~~~Ee~~n~s~~i~s~~~si 141 (423)
+..+=.++|-.++++++|..-.+..+++.-+.+....+++.+...++.-....+
T Consensus 156 ~~~lr~k~dss~s~~q~e~~~~~~~~~~~~s~l~~~eke~~~~~~ql~~~~q~~ 209 (716)
T KOG4593|consen 156 LGTLRNKLDSSLSELQWEVMLQEMRAKRLHSELQNEEKELDRQHKQLQEENQKI 209 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667788888999999999999999888888877777777777766655554
No 144
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=79.34 E-value=80 Score=32.46 Aligned_cols=31 Identities=19% Similarity=0.130 Sum_probs=14.4
Q ss_pred hhhhhhhhhhhhhHHHHHHHHhhhHHHHHHH
Q psy14534 118 STLQVVNETRESDANYLKSTVSTLATLQEKV 148 (423)
Q Consensus 118 s~l~~~~Ee~~n~s~~i~s~~~sis~lqek~ 148 (423)
..|...|..+..++.+|..+.+.....|+.|
T Consensus 206 ~QL~~An~qia~LseELa~k~Ee~~rQQEEI 236 (306)
T PF04849_consen 206 KQLSEANQQIASLSEELARKTEENRRQQEEI 236 (306)
T ss_pred HHhhhcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555555443333333
No 145
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=79.17 E-value=30 Score=36.31 Aligned_cols=107 Identities=16% Similarity=0.251 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHHhhhcchhHHHHHHhhhhhhhhhhhhhhhh----hhhhhhhHHHHHHHHhhhHHHHHHHHHHHH-HH
Q psy14534 81 MMELLESIETIENKVDYNLPTIQREISKLEFGVAQINSTLQVV----NETRESDANYLKSTVSTLATLQEKVEANNI-IM 155 (423)
Q Consensus 81 ~~el~e~ve~~~~~~d~~ip~~~~EI~e~e~~l~q~ts~l~~~----~Ee~~n~s~~i~s~~~sis~lqek~~~~~k-v~ 155 (423)
+++||-+=++|. .+|..+..++.+|.+++.++.+........ .+.+.++...|+.....|..++++.+.... |.
T Consensus 10 in~lfp~e~SL~-~ld~~i~~l~~~i~~ld~eI~~~v~~q~~~~~~~~~~l~~a~~~i~~L~~~i~~ik~kA~~sE~~V~ 88 (383)
T PF04100_consen 10 INELFPDEQSLS-NLDELIAKLRKEIRELDEEIKELVREQSSSGQDAEEDLEEAQEAIQELFEKISEIKSKAEESEQMVQ 88 (383)
T ss_pred HHHhCCChHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455665555664 367777888888888888888777666533 345678888888888888888888876333 33
Q ss_pred H-------HHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy14534 156 Q-------ALSDANYLKSTVSTLATLQEKVEANNIIMQAL 188 (423)
Q Consensus 156 ~-------le~Q~~~I~~l~~~v~~~~~ql~~q~~l~~kl 188 (423)
. +-..-++|.....+++.+|.-+.....|+.-+
T Consensus 89 ~it~dIk~LD~AKrNLT~SIT~LkrL~MLv~a~~qL~~~~ 128 (383)
T PF04100_consen 89 EITRDIKQLDNAKRNLTQSITTLKRLQMLVTAVEQLKELA 128 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 33333444444455555554444444444433
No 146
>PRK10884 SH3 domain-containing protein; Provisional
Probab=79.14 E-value=12 Score=36.00 Aligned_cols=22 Identities=18% Similarity=0.449 Sum_probs=13.7
Q ss_pred cchhHHHHHHhhhhhhhhhhhh
Q psy14534 98 NLPTIQREISKLEFGVAQINST 119 (423)
Q Consensus 98 ~ip~~~~EI~e~e~~l~q~ts~ 119 (423)
.+|.+++|+++++.+++.+..+
T Consensus 94 rlp~le~el~~l~~~l~~~~~~ 115 (206)
T PRK10884 94 RVPDLENQVKTLTDKLNNIDNT 115 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHhH
Confidence 4566666777666666665544
No 147
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=79.11 E-value=19 Score=32.36 Aligned_cols=12 Identities=25% Similarity=0.343 Sum_probs=5.1
Q ss_pred HHHHHhhhhhhh
Q psy14534 103 QREISKLEFGVA 114 (423)
Q Consensus 103 ~~EI~e~e~~l~ 114 (423)
..||++.|.++.
T Consensus 132 ~~e~rkke~E~~ 143 (151)
T PF11559_consen 132 EHELRKKEREIE 143 (151)
T ss_pred HHHHHHHHHHHH
Confidence 444444444433
No 148
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=79.11 E-value=1.1e+02 Score=33.78 Aligned_cols=51 Identities=24% Similarity=0.305 Sum_probs=25.9
Q ss_pred chhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhhHHHHHHHH
Q psy14534 99 LPTIQREISKLEFGVAQINSTLQVVNETRESDANYLKSTVSTLATLQEKVE 149 (423)
Q Consensus 99 ip~~~~EI~e~e~~l~q~ts~l~~~~Ee~~n~s~~i~s~~~sis~lqek~~ 149 (423)
.+++..++.+....+..+...+..+++.+.++...=..--..+..++.++.
T Consensus 374 yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~ 424 (560)
T PF06160_consen 374 YSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLR 424 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555555544444444444444443
No 149
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=79.07 E-value=13 Score=38.05 Aligned_cols=8 Identities=13% Similarity=-0.276 Sum_probs=4.2
Q ss_pred EEEECCCc
Q psy14534 242 QLISLGRS 249 (423)
Q Consensus 242 Y~I~p~~~ 249 (423)
|.|.|-++
T Consensus 196 y~l~P~Gs 203 (314)
T PF04111_consen 196 YRLVPMGS 203 (314)
T ss_dssp EEEE--GG
T ss_pred ceeEecCC
Confidence 78887654
No 150
>PRK10884 SH3 domain-containing protein; Provisional
Probab=78.80 E-value=24 Score=33.99 Aligned_cols=40 Identities=15% Similarity=0.333 Sum_probs=23.8
Q ss_pred cchhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhHHHHHHH
Q psy14534 98 NLPTIQREISKLEFGVAQINSTLQVVNETRESDANYLKST 137 (423)
Q Consensus 98 ~ip~~~~EI~e~e~~l~q~ts~l~~~~Ee~~n~s~~i~s~ 137 (423)
.-|..+--+.++|.+++++.++|..++.+..+...+++.+
T Consensus 87 ~~p~~~~rlp~le~el~~l~~~l~~~~~~~~~~~~~l~~~ 126 (206)
T PRK10884 87 TTPSLRTRVPDLENQVKTLTDKLNNIDNTWNQRTAEMQQK 126 (206)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3466677777777777777766666665544444443333
No 151
>KOG0018|consensus
Probab=78.63 E-value=19 Score=42.41 Aligned_cols=117 Identities=20% Similarity=0.217 Sum_probs=68.2
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhccccccchhhhhhhhHHHHHHHH-HHHHHHhhhcc
Q psy14534 21 TKHHLEKEQHVINHKMKTLQAINEEILQRISHLETSSQTNVKTLFNITKQISGVEHLHSSMMELLESI-ETIENKVDYNL 99 (423)
Q Consensus 21 ~~~~le~~~~~~~~~~~~l~~~~~~~~~r~~~~e~~~~~l~~~~~n~s~q~~~~~k~~~s~~el~e~v-e~~~~~~d~~i 99 (423)
+|=++|..++.....+..+++....+..|....|.+.....++..++.++++.+|+.-..-.+.+-+- +-+. |-.+.
T Consensus 221 qLfhvE~~i~k~~~els~~~~ei~~~~~~~d~~e~ei~~~k~e~~ki~re~~~~Dk~i~~ke~~l~erp~li~--~ke~~ 298 (1141)
T KOG0018|consen 221 ELFHVEACIEKANDELSRLNAEIPKLKERMDKKEREIRVRKKERGKIRRELQKVDKKISEKEEKLAERPELIK--VKENA 298 (1141)
T ss_pred HHhhhhhhHhhhhHHHHHHhhhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhh--cchhh
Confidence 34455666666666666666655666677777777777777888888888887776654443333330 1121 22244
Q ss_pred hhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHh
Q psy14534 100 PTIQREISKLEFGVAQINSTLQVVNETRESDANYLKSTVS 139 (423)
Q Consensus 100 p~~~~EI~e~e~~l~q~ts~l~~~~Ee~~n~s~~i~s~~~ 139 (423)
|..+..|++.+-.+...-.......++++-+..++.+..-
T Consensus 299 ~~~k~rl~~~~k~i~~~kk~~~~~~~~ie~~ek~l~av~~ 338 (1141)
T KOG0018|consen 299 SHLKKRLEEIEKDIETAKKDYRALKETIERLEKELKAVEG 338 (1141)
T ss_pred ccchhHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555555555555555554433
No 152
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=78.34 E-value=1.7e+02 Score=35.86 Aligned_cols=56 Identities=5% Similarity=0.052 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhhhcchhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhh
Q psy14534 85 LESIETIENKVDYNLPTIQREISKLEFGVAQINSTLQVVNETRESDANYLKSTVSTL 141 (423)
Q Consensus 85 ~e~ve~~~~~~d~~ip~~~~EI~e~e~~l~q~ts~l~~~~Ee~~n~s~~i~s~~~si 141 (423)
...++.+..+. ..+|..+..+...+..+......+....+++..+..++..+.+.+
T Consensus 864 ~~~~~~L~~A~-~~~~~a~~~le~ae~~l~~~~~e~~~~~~e~~~a~~~l~~l~e~l 919 (1353)
T TIGR02680 864 EVAVRELRHAA-TRAAEQRARAARAESDAREAAEDAAEARAEAEEASLRLRTLEESV 919 (1353)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344443333 445666666666666666666666555566555555555555444
No 153
>KOG4403|consensus
Probab=78.31 E-value=50 Score=35.50 Aligned_cols=96 Identities=17% Similarity=0.297 Sum_probs=50.0
Q ss_pred HHHHHhhhhhhhhhHHHHHHhhccccccchhhhhhhhH-HHHHHHHHHHHHHhhhcchhHHHHHHhhhhhhh--------
Q psy14534 44 EEILQRISHLETSSQTNVKTLFNITKQISGVEHLHSSM-MELLESIETIENKVDYNLPTIQREISKLEFGVA-------- 114 (423)
Q Consensus 44 ~~~~~r~~~~e~~~~~l~~~~~n~s~q~~~~~k~~~s~-~el~e~ve~~~~~~d~~ip~~~~EI~e~e~~l~-------- 114 (423)
+.+.+||.+--.++++.+-+-.|+-+.+. .... -+|.+.+|.=..+ +-|-.+|.++++.|++|.
T Consensus 262 ~dlQk~Lekar~e~rnvavek~~lerkl~-----ea~rl~elreg~e~e~~r--kelE~lR~~L~kAEkele~nS~wsaP 334 (575)
T KOG4403|consen 262 EDLQKRLEKAREEQRNVAVEKLDLERKLD-----EAPRLSELREGVENETSR--KELEQLRVALEKAEKELEANSSWSAP 334 (575)
T ss_pred HHHHHHHHHHHHhhhchhhhhhhHHHHHh-----hhhhhhhhhcchhHHHHH--HHHHHHHHHHHHHHHHHHhccCCCCc
Confidence 44555555444555555544445444442 1111 2555555554444 366778888888888877
Q ss_pred -------hhhhhh--hhhhhhhhhhHHHHHHHHhhhHHHHH
Q psy14534 115 -------QINSTL--QVVNETRESDANYLKSTVSTLATLQE 146 (423)
Q Consensus 115 -------q~ts~l--~~~~Ee~~n~s~~i~s~~~sis~lqe 146 (423)
|.|-++ +..+..-.|.-++++...+-..+|+-
T Consensus 335 ~aLQ~wLq~T~E~E~q~~~kkrqnaekql~~Ake~~eklkK 375 (575)
T KOG4403|consen 335 LALQKWLQLTHEVEVQYYNKKRQNAEKQLKEAKEMAEKLKK 375 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 333333 44444445555555555555533333
No 154
>KOG1899|consensus
Probab=78.25 E-value=31 Score=38.66 Aligned_cols=77 Identities=16% Similarity=0.247 Sum_probs=42.9
Q ss_pred hhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhccc-----cccchhhhhhhhHHHHHHHHH
Q psy14534 15 GKLFLKTKHHLEKEQHVINHKMKTLQAINEEILQRISHLETSSQTNVKTLFNIT-----KQISGVEHLHSSMMELLESIE 89 (423)
Q Consensus 15 ~~~~~~~~~~le~~~~~~~~~~~~l~~~~~~~~~r~~~~e~~~~~l~~~~~n~s-----~q~~~~~k~~~s~~el~e~ve 89 (423)
.--..++|++||.--+-|.=|..-|-.+++.--|.|+.||.=...-.+ .-|++ +++-+--.|..+-|+|+-.|+
T Consensus 106 ~~~yQerLaRLe~dkesL~LQvsvLteqVeaQgEKIrDLE~cie~kr~-kLnatEEmLQqellsrtsLETqKlDLmaevS 184 (861)
T KOG1899|consen 106 YPEYQERLARLEMDKESLQLQVSVLTEQVEAQGEKIRDLETCIEEKRN-KLNATEEMLQQELLSRTSLETQKLDLMAEVS 184 (861)
T ss_pred chHHHHHHHHHhcchhhheehHHHHHHHHHHhhhhHHHHHHHHHHHHh-hhchHHHHHHHHHHhhhhHHHHHhHHHHHHH
Confidence 345678888888877776666666655666667777777764332221 22222 222222334444456665555
Q ss_pred HHH
Q psy14534 90 TIE 92 (423)
Q Consensus 90 ~~~ 92 (423)
.|-
T Consensus 185 eLK 187 (861)
T KOG1899|consen 185 ELK 187 (861)
T ss_pred HhH
Confidence 543
No 155
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=77.72 E-value=14 Score=29.87 Aligned_cols=34 Identities=15% Similarity=0.139 Sum_probs=18.3
Q ss_pred cchhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhH
Q psy14534 98 NLPTIQREISKLEFGVAQINSTLQVVNETRESDA 131 (423)
Q Consensus 98 ~ip~~~~EI~e~e~~l~q~ts~l~~~~Ee~~n~s 131 (423)
+|.-++.||.++.+........-..++++...++
T Consensus 19 ti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~ 52 (72)
T PF06005_consen 19 TIALLQMENEELKEKNNELKEENEELKEENEQLK 52 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 4445577777777665555544444444443333
No 156
>KOG0978|consensus
Probab=77.50 E-value=60 Score=36.86 Aligned_cols=42 Identities=17% Similarity=0.252 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhcccccc
Q psy14534 30 HVINHKMKTLQAINEEILQRISHLETSSQTNVKTLFNITKQI 71 (423)
Q Consensus 30 ~~~~~~~~~l~~~~~~~~~r~~~~e~~~~~l~~~~~n~s~q~ 71 (423)
..++.++..+.....-...+|+.||...+.|.....++..++
T Consensus 506 ~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~el 547 (698)
T KOG0978|consen 506 SKLEEQILTLKASVDKLELKIGKLEEQERGLTSNESKLIKEL 547 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHH
Confidence 333333344433344444555555555555555444444333
No 157
>KOG1937|consensus
Probab=77.43 E-value=1.1e+02 Score=33.11 Aligned_cols=56 Identities=13% Similarity=0.167 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHhhhcchhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhh
Q psy14534 84 LLESIETIENKVDYNLPTIQREISKLEFGVAQINSTLQVVNETRESDANYLKSTVSTL 141 (423)
Q Consensus 84 l~e~ve~~~~~~d~~ip~~~~EI~e~e~~l~q~ts~l~~~~Ee~~n~s~~i~s~~~si 141 (423)
|...++.+...| .....+.=|+|..-++++--....-+-+|-+.+.+++|+..+.+
T Consensus 371 Lrsele~lp~dv--~rk~ytqrikEi~gniRKq~~DI~Kil~etreLqkq~ns~se~L 426 (521)
T KOG1937|consen 371 LRSELEKLPDDV--QRKVYTQRIKEIDGNIRKQEQDIVKILEETRELQKQENSESEAL 426 (521)
T ss_pred HHHHHhcCCchh--HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555544 45566778888888888888888777788888888888777653
No 158
>KOG0804|consensus
Probab=77.40 E-value=62 Score=34.93 Aligned_cols=8 Identities=13% Similarity=-0.055 Sum_probs=3.2
Q ss_pred HHhhHHHH
Q psy14534 157 ALSDANYL 164 (423)
Q Consensus 157 le~Q~~~I 164 (423)
|++|++.|
T Consensus 440 LqEQlrDl 447 (493)
T KOG0804|consen 440 LQEQLRDL 447 (493)
T ss_pred HHHHHHhH
Confidence 33444433
No 159
>PRK10869 recombination and repair protein; Provisional
Probab=77.36 E-value=55 Score=35.94 Aligned_cols=25 Identities=8% Similarity=0.004 Sum_probs=13.2
Q ss_pred hHHHHHhhHHHHHHHHHHHHHHHHH
Q psy14534 17 LFLKTKHHLEKEQHVINHKMKTLQA 41 (423)
Q Consensus 17 ~~~~~~~~le~~~~~~~~~~~~l~~ 41 (423)
=+.+++.++........+++..|+-
T Consensus 168 ~~~~~l~~l~~~~~~~~~~~d~l~f 192 (553)
T PRK10869 168 QSCRDLAQHQQQSQERAARKQLLQY 192 (553)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3455666666655555555444433
No 160
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=77.07 E-value=72 Score=30.70 Aligned_cols=23 Identities=13% Similarity=0.199 Sum_probs=8.8
Q ss_pred hhhhhHHHHHHhhccccccchhh
Q psy14534 53 LETSSQTNVKTLFNITKQISGVE 75 (423)
Q Consensus 53 ~e~~~~~l~~~~~n~s~q~~~~~ 75 (423)
|+...++|+.++.-+.+.|-+++
T Consensus 13 L~~~n~~L~~en~kL~~~ve~~e 35 (193)
T PF14662_consen 13 LQLNNQKLADENAKLQRSVETAE 35 (193)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 161
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=77.02 E-value=23 Score=33.26 Aligned_cols=76 Identities=8% Similarity=0.227 Sum_probs=61.3
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHhhhcchhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhhHHHHHHHHH
Q psy14534 73 GVEHLHSSMMELLESIETIENKVDYNLPTIQREISKLEFGVAQINSTLQVVNETRESDANYLKSTVSTLATLQEKVEA 150 (423)
Q Consensus 73 ~~~k~~~s~~el~e~ve~~~~~~d~~ip~~~~EI~e~e~~l~q~ts~l~~~~Ee~~n~s~~i~s~~~sis~lqek~~~ 150 (423)
-+|.+.-+++.+..+|..+...|+---+.+-.-| .+.........+..+.+++......+.+.+..+.+++.++..
T Consensus 67 w~d~~~P~ii~~~~~I~~Y~~~f~syY~~L~~~i--d~~~~~~~~~~i~~L~~~i~~~q~~~~~~i~~L~~f~~~l~~ 142 (184)
T PF05791_consen 67 WLDTIKPQIIDLNQDIINYNTTFQSYYDTLVEAI--DQKDKEDLKEIIEDLQDQIQKNQDKVQALINELNDFKDKLQK 142 (184)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788999999999999999999988777777777 455556667777888888888888888888888888776644
No 162
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=76.79 E-value=1.2e+02 Score=35.06 Aligned_cols=149 Identities=19% Similarity=0.197 Sum_probs=86.0
Q ss_pred CCCCCCcccchhhHHHHHhhHHHHH--HHHHHHHHHHHHHH---------------------------HHHHHhhhhhhh
Q psy14534 5 PILPDPRYRNGKLFLKTKHHLEKEQ--HVINHKMKTLQAIN---------------------------EEILQRISHLET 55 (423)
Q Consensus 5 ~~~~~~~~r~~~~~~~~~~~le~~~--~~~~~~~~~l~~~~---------------------------~~~~~r~~~~e~ 55 (423)
+..+.||.|--|||..+|+-|=-.| .++.|.+.+++.-. -.+-.|||-|.-
T Consensus 329 ~~kta~KVrt~KYLLgELkaLVaeq~DsE~qRLitEvE~cislLPav~g~tniq~EIALA~QplrsENaqLrRrLrilnq 408 (861)
T PF15254_consen 329 PNKTAEKVRTLKYLLGELKALVAEQEDSEVQRLITEVEACISLLPAVSGSTNIQVEIALAMQPLRSENAQLRRRLRILNQ 408 (861)
T ss_pred cchHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhhhhhccccchhhhHhhhhhhhhhhHHHHHHHHHHHH
Confidence 3456678888888888888875544 56666677766611 124446666655
Q ss_pred hhHHHHHHh-----hccccccchhhh----hhhhHHHHHHHHHHHHHHhhhcchhH---HHHHHhhhhhhhhhhhhh---
Q psy14534 56 SSQTNVKTL-----FNITKQISGVEH----LHSSMMELLESIETIENKVDYNLPTI---QREISKLEFGVAQINSTL--- 120 (423)
Q Consensus 56 ~~~~l~~~~-----~n~s~q~~~~~k----~~~s~~el~e~ve~~~~~~d~~ip~~---~~EI~e~e~~l~q~ts~l--- 120 (423)
.+++-.+.- ...+-.|..|.- |+.++.|.+.+.|.++.+-+..+..+ +.|=+++-..+..+.-+|
T Consensus 409 qlreqe~~~k~~~~~~~n~El~sLqSlN~~Lq~ql~es~k~~e~lq~kneellk~~e~q~~Enk~~~~~~~ekd~~l~~~ 488 (861)
T PF15254_consen 409 QLREQEKAEKTSGSQDCNLELFSLQSLNMSLQNQLQESLKSQELLQSKNEELLKVIENQKEENKRLRKMFQEKDQELLEN 488 (861)
T ss_pred HHHHHHhhcccCCCcccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 544422111 111222332222 44556677888888887777666654 333333333333222223
Q ss_pred -hhhhhhhhhhHHHHHHHHhhhHHHHHHHHHHHH
Q psy14534 121 -QVVNETRESDANYLKSTVSTLATLQEKVEANNI 153 (423)
Q Consensus 121 -~~~~Ee~~n~s~~i~s~~~sis~lqek~~~~~k 153 (423)
+..--|..+++.+|....+.+..+|=+.+.-++
T Consensus 489 kq~~d~e~~rik~ev~eal~~~k~~q~kLe~sek 522 (861)
T PF15254_consen 489 KQQFDIETTRIKIEVEEALVNVKSLQFKLEASEK 522 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHh
Confidence 333446778888999888888888877776444
No 163
>KOG1029|consensus
Probab=76.76 E-value=1.5e+02 Score=34.31 Aligned_cols=59 Identities=14% Similarity=0.234 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHhhhcchhH---HHHHHhhhhhhhhhhh---hhhhhhhhhhhhHHHHHHHHhhh
Q psy14534 83 ELLESIETIENKVDYNLPTI---QREISKLEFGVAQINS---TLQVVNETRESDANYLKSTVSTL 141 (423)
Q Consensus 83 el~e~ve~~~~~~d~~ip~~---~~EI~e~e~~l~q~ts---~l~~~~Ee~~n~s~~i~s~~~si 141 (423)
+|-..+--++++.-+++|+. ..-|+......+-+++ +|.+..+.-.-+.+.|...+..|
T Consensus 490 qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~a~~~~~~~~s~L~aa~~~ke~irq~ikdqldel 554 (1118)
T KOG1029|consen 490 QLQARIKELQEKLQKLAPEKQELNHQLKQKQSAHKETTQRKSELEAARRKKELIRQAIKDQLDEL 554 (1118)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555566666666654 2334444444444444 33333333334444444444444
No 164
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=76.34 E-value=44 Score=27.86 Aligned_cols=46 Identities=15% Similarity=0.250 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhHHHHHHhhccccccc-hhhhhhhhH
Q psy14534 36 MKTLQAINEEILQRISHLETSSQTNVKTLFNITKQIS-GVEHLHSSM 81 (423)
Q Consensus 36 ~~~l~~~~~~~~~r~~~~e~~~~~l~~~~~n~s~q~~-~~~k~~~s~ 81 (423)
+..+......+.+-+..++.....+.+....+..+|. .+++++.-+
T Consensus 9 l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~I~~~f~~l~~~L 55 (127)
T smart00502 9 LTKLRKKAAELEDALKQLISIIQEVEENAADVEAQIKAAFDELRNAL 55 (127)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334333444444444444444445444444555553 444444443
No 165
>KOG4809|consensus
Probab=76.13 E-value=67 Score=35.54 Aligned_cols=29 Identities=10% Similarity=0.113 Sum_probs=17.3
Q ss_pred HHHHHhhhhhhhhhHHHHHHhhccccccc
Q psy14534 44 EEILQRISHLETSSQTNVKTLFNITKQIS 72 (423)
Q Consensus 44 ~~~~~r~~~~e~~~~~l~~~~~n~s~q~~ 72 (423)
+.++.+|+++|+.+.--.+++....+|+.
T Consensus 376 lk~ds~Lk~leIalEqkkEec~kme~qLk 404 (654)
T KOG4809|consen 376 LKRDSKLKSLEIALEQKKEECSKMEAQLK 404 (654)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666655566655555554
No 166
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=75.92 E-value=0.86 Score=51.15 Aligned_cols=44 Identities=23% Similarity=0.277 Sum_probs=0.0
Q ss_pred HHHHHhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhhHHHHH
Q psy14534 103 QREISKLEFGVAQINSTLQVVNETRESDANYLKSTVSTLATLQE 146 (423)
Q Consensus 103 ~~EI~e~e~~l~q~ts~l~~~~Ee~~n~s~~i~s~~~sis~lqe 146 (423)
+.+|...+..+....++++.+++++..+...+......++.|+.
T Consensus 177 ~~~~~~~e~~~~~l~~e~~~l~~~le~~~~~~~e~e~~~~~L~~ 220 (722)
T PF05557_consen 177 ERQAENAESQIQSLESELEELKEQLEELQSELQEAEQQLQELQA 220 (722)
T ss_dssp --------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444455555566666666666555555555555543
No 167
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=75.88 E-value=43 Score=33.93 Aligned_cols=67 Identities=16% Similarity=0.252 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhccccccchhhhhhhhHHHHHHHHHHHHHHh
Q psy14534 29 QHVINHKMKTLQAINEEILQRISHLETSSQTNVKTLFNITKQISGVEHLHSSMMELLESIETIENKV 95 (423)
Q Consensus 29 ~~~~~~~~~~l~~~~~~~~~r~~~~e~~~~~l~~~~~n~s~q~~~~~k~~~s~~el~e~ve~~~~~~ 95 (423)
+..|.-++..|+|...-+-=-|.+||.++.--....-+....++.|-+=+.+++|..++++.--.+.
T Consensus 20 IqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKl 86 (307)
T PF10481_consen 20 IQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKL 86 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHh
Confidence 3334444555544444444457788888888888888888888899999999988888877665554
No 168
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=75.48 E-value=4.3 Score=32.40 Aligned_cols=44 Identities=25% Similarity=0.380 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhccccccchh
Q psy14534 31 VINHKMKTLQAINEEILQRISHLETSSQTNVKTLFNITKQISGV 74 (423)
Q Consensus 31 ~~~~~~~~l~~~~~~~~~r~~~~e~~~~~l~~~~~n~s~q~~~~ 74 (423)
.+.++++++++....+.+|++.||.....+..++-|+..+|+.+
T Consensus 3 ~i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I 46 (71)
T PF10779_consen 3 DIKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKI 46 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677766777777888888888888777777777777543
No 169
>KOG0962|consensus
Probab=75.40 E-value=2e+02 Score=35.03 Aligned_cols=12 Identities=25% Similarity=0.421 Sum_probs=9.1
Q ss_pred CCCCCCcccCCC
Q psy14534 353 NNMKFSTIDRDN 364 (423)
Q Consensus 353 ng~~FST~DrDn 364 (423)
-.-||+-.|++|
T Consensus 1213 LDEPTTNLD~~n 1224 (1294)
T KOG0962|consen 1213 LDEPTTNLDREN 1224 (1294)
T ss_pred ccCCccccCHhH
Confidence 456888888876
No 170
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=75.28 E-value=66 Score=29.69 Aligned_cols=49 Identities=18% Similarity=0.163 Sum_probs=32.2
Q ss_pred cchhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhhHHHHH
Q psy14534 98 NLPTIQREISKLEFGVAQINSTLQVVNETRESDANYLKSTVSTLATLQE 146 (423)
Q Consensus 98 ~ip~~~~EI~e~e~~l~q~ts~l~~~~Ee~~n~s~~i~s~~~sis~lqe 146 (423)
-|-+-..|+.++....+.+.-.|.-.+|.++.+..++..+-..+...++
T Consensus 57 kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~ 105 (177)
T PF13870_consen 57 KIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREE 105 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345557777777777777777777777777777666666666633333
No 171
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=75.02 E-value=1.7e+02 Score=34.00 Aligned_cols=14 Identities=36% Similarity=0.677 Sum_probs=5.4
Q ss_pred hhHHHHHHHHHHHH
Q psy14534 79 SSMMELLESIETIE 92 (423)
Q Consensus 79 ~s~~el~e~ve~~~ 92 (423)
++..++++.+..++
T Consensus 315 ~~~~~~~~~l~~~~ 328 (908)
T COG0419 315 EELEELLEKLKSLE 328 (908)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 172
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=74.65 E-value=23 Score=37.46 Aligned_cols=62 Identities=16% Similarity=0.150 Sum_probs=47.8
Q ss_pred hhhhHHHHHHHHHHHHHHhhhcchhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhh
Q psy14534 77 LHSSMMELLESIETIENKVDYNLPTIQREISKLEFGVAQINSTLQVVNETRESDANYLKSTVSTL 141 (423)
Q Consensus 77 ~~~s~~el~e~ve~~~~~~d~~ip~~~~EI~e~e~~l~q~ts~l~~~~Ee~~n~s~~i~s~~~si 141 (423)
+.+++-|-....+.||+-++..+---++||.-+..+|+.+-.++.+.-.|. .++|...+++.
T Consensus 249 ~~~~LqEEr~R~erLEeqlNd~~elHq~Ei~~LKqeLa~~EEK~~Yqs~eR---aRdi~E~~Es~ 310 (395)
T PF10267_consen 249 ILEALQEERYRYERLEEQLNDLTELHQNEIYNLKQELASMEEKMAYQSYER---ARDIWEVMESC 310 (395)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH---HhHHHHHHHHH
Confidence 455555666777888888888888889999999999999888888776666 66666666665
No 173
>PRK11519 tyrosine kinase; Provisional
Probab=74.61 E-value=1.6e+02 Score=33.40 Aligned_cols=25 Identities=16% Similarity=0.048 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHhhhhhhhhhHHHH
Q psy14534 37 KTLQAINEEILQRISHLETSSQTNV 61 (423)
Q Consensus 37 ~~l~~~~~~~~~r~~~~e~~~~~l~ 61 (423)
.=|+++...+.+++...|.+....+
T Consensus 270 ~fL~~ql~~l~~~L~~aE~~l~~fr 294 (719)
T PRK11519 270 AFLAQQLPEVRSRLDVAENKLNAFR 294 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444444433
No 174
>KOG0963|consensus
Probab=74.51 E-value=1.5e+02 Score=33.21 Aligned_cols=45 Identities=22% Similarity=0.282 Sum_probs=27.2
Q ss_pred hhHHHHHHhhhhhhhhhhhhhhhh-hhhhhhhHHHHHHHHhhhHHH
Q psy14534 100 PTIQREISKLEFGVAQINSTLQVV-NETRESDANYLKSTVSTLATL 144 (423)
Q Consensus 100 p~~~~EI~e~e~~l~q~ts~l~~~-~Ee~~n~s~~i~s~~~sis~l 144 (423)
=.+.+|+..+..+++..++..+.- -+++.-+...+++|-..|+.|
T Consensus 252 ~~lE~e~e~L~~ql~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L 297 (629)
T KOG0963|consen 252 VFLEREVEQLREQLAKANSSKKLAKIDDIDALGSVLNQKDSEIAQL 297 (629)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhccCCchHHHHHHHhHHHHHHHHH
Confidence 455777777777777777666433 255555555566555544433
No 175
>PTZ00464 SNF-7-like protein; Provisional
Probab=74.50 E-value=80 Score=30.60 Aligned_cols=25 Identities=12% Similarity=0.142 Sum_probs=14.7
Q ss_pred hhHHHHHhhHHHHHHHHHHHHHHHH
Q psy14534 16 KLFLKTKHHLEKEQHVINHKMKTLQ 40 (423)
Q Consensus 16 ~~~~~~~~~le~~~~~~~~~~~~l~ 40 (423)
+-++++++.|++++..+++++....
T Consensus 21 ~~l~~r~~~l~kKi~~ld~E~~~ak 45 (211)
T PTZ00464 21 KRIGGRSEVVDARINKIDAELMKLK 45 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666665555443
No 176
>KOG0977|consensus
Probab=74.30 E-value=1.5e+02 Score=32.93 Aligned_cols=49 Identities=10% Similarity=-0.042 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhccccccchhhhh
Q psy14534 29 QHVINHKMKTLQAINEEILQRISHLETSSQTNVKTLFNITKQISGVEHL 77 (423)
Q Consensus 29 ~~~~~~~~~~l~~~~~~~~~r~~~~e~~~~~l~~~~~n~s~q~~~~~k~ 77 (423)
+-.|+-+|+.+=-++.-++..=+.|+.+...|......=+-.|+.+...
T Consensus 44 l~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~ 92 (546)
T KOG0977|consen 44 LQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEA 92 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhh
Confidence 3344445555433344456666667777666666555555555544443
No 177
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=74.14 E-value=80 Score=29.94 Aligned_cols=54 Identities=13% Similarity=0.283 Sum_probs=29.9
Q ss_pred hhhhHHHHHHHHHHHHHHhhhcchhHHHHHHhhhhhhhhhhhhhhhhhhhhhhh
Q psy14534 77 LHSSMMELLESIETIENKVDYNLPTIQREISKLEFGVAQINSTLQVVNETRESD 130 (423)
Q Consensus 77 ~~~s~~el~e~ve~~~~~~d~~ip~~~~EI~e~e~~l~q~ts~l~~~~Ee~~n~ 130 (423)
+.+.+.++++.+|-=+.-+|..|=++..+|.+.+..+++..+...-+..++...
T Consensus 10 ~~a~~~~~ld~~EDP~~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~ 63 (221)
T PF04012_consen 10 VKANINELLDKAEDPEKMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEA 63 (221)
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666655555555566666666666666665555554444444333
No 178
>KOG4673|consensus
Probab=73.36 E-value=1.8e+02 Score=33.39 Aligned_cols=54 Identities=19% Similarity=0.189 Sum_probs=28.6
Q ss_pred HHHHHhhHHHHHHHHHHH-------HHHHHHH---------HHHHHHhhhhhhhhhHHHHHHhhcccccc
Q psy14534 18 FLKTKHHLEKEQHVINHK-------MKTLQAI---------NEEILQRISHLETSSQTNVKTLFNITKQI 71 (423)
Q Consensus 18 ~~~~~~~le~~~~~~~~~-------~~~l~~~---------~~~~~~r~~~~e~~~~~l~~~~~n~s~q~ 71 (423)
++++|..||++--.+-++ ++.|++- ..+.++-|+.|-.+...|.+.+.--+.+|
T Consensus 407 ~~QRva~lEkKvqa~~kERDalr~e~kslk~ela~~l~~DeLaEkdE~I~~lm~EGEkLSK~ql~qs~iI 476 (961)
T KOG4673|consen 407 YHQRVATLEKKVQALTKERDALRREQKSLKKELAAALLKDELAEKDEIINQLMAEGEKLSKKQLAQSAII 476 (961)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 456777788776655444 4433321 12355556666666666665544433333
No 179
>TIGR00255 conserved hypothetical protein TIGR00255. The apparent ortholog from Aquifex aeolicus as reported is split into two consecutive reading frames.
Probab=73.12 E-value=99 Score=31.41 Aligned_cols=60 Identities=23% Similarity=0.243 Sum_probs=36.9
Q ss_pred hHHHHHHhhhhhhhhhhhhh--------------hhhhhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHH
Q psy14534 101 TIQREISKLEFGVAQINSTL--------------QVVNETRESDANYLKSTVSTLATLQEKVEANNIIMQALSDANYL 164 (423)
Q Consensus 101 ~~~~EI~e~e~~l~q~ts~l--------------~~~~Ee~~n~s~~i~s~~~sis~lqek~~~~~kv~~le~Q~~~I 164 (423)
+|..||..+.-++.+.-..| |..+.|+ ..|.||+.+..--+--++++..++++.+|..+|
T Consensus 217 DI~EEl~RL~sHl~~f~~~L~~~~~vGrkLDFL~QEmnRE~----NTigSKs~d~~is~~vVe~K~eiEkiREQVQNI 290 (291)
T TIGR00255 217 DIAEEIDRLDSHVKEFYNILKKGEAVGRKLDFMMQELNRES----NTLASKAIDADITNLAVEMKVLIEKIKEQIQNI 290 (291)
T ss_pred chHHHHHHHHHHHHHHHHHHhcCCCcCcchhHHHHHHhHHH----HHHHHccCcHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 57778888877777766666 4444444 455566665544555566666666666665544
No 180
>PF15294 Leu_zip: Leucine zipper
Probab=73.09 E-value=96 Score=31.48 Aligned_cols=53 Identities=15% Similarity=0.189 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHhhhcchhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhHHHHH
Q psy14534 83 ELLESIETIENKVDYNLPTIQREISKLEFGVAQINSTLQVVNETRESDANYLK 135 (423)
Q Consensus 83 el~e~ve~~~~~~d~~ip~~~~EI~e~e~~l~q~ts~l~~~~Ee~~n~s~~i~ 135 (423)
+|=..|..+...|.+++.+....-+.+++.|..+-++|-.++|.+.....++-
T Consensus 194 dLE~k~a~lK~e~ek~~~d~~~~~k~L~e~L~~~KhelL~~QeqL~~aekeLe 246 (278)
T PF15294_consen 194 DLENKMAALKSELEKALQDKESQQKALEETLQSCKHELLRVQEQLSLAEKELE 246 (278)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhcchhhHH
Confidence 44455555555555555555555555555555555554444444443333333
No 181
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=72.84 E-value=24 Score=34.42 Aligned_cols=38 Identities=11% Similarity=0.038 Sum_probs=22.0
Q ss_pred eEEEEEecCCccccccChHhhccccCCCCccccccchh
Q psy14534 257 WMTIQRRYNGMQEFNLKWTDYAQGFGSPESEFWIGNDA 294 (423)
Q Consensus 257 WTVIQrR~dGsv~FnR~W~eY~~GFG~~~gEfWLGLe~ 294 (423)
++|=.=|.+--.-|+++=+.-..|++++...-|.-|+.
T Consensus 182 ~~V~~LrlGr~~l~~~t~Dg~~~g~~~~~~~~W~~l~~ 219 (251)
T PF11932_consen 182 RQVDFLRLGRVALYYQTLDGSQAGVWDPATGQWQWLPD 219 (251)
T ss_pred EEEEEEeecchhheeECCCccceeeecCCCCCCeECCH
Confidence 44444454444445556555666777777767766543
No 182
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=72.76 E-value=57 Score=39.02 Aligned_cols=99 Identities=17% Similarity=0.152 Sum_probs=49.6
Q ss_pred HHHHHHHhhhhhhhhhHHHHHHhhccccccchhhhhhhhHHHHHHHHHHHHHHhhhcchhHHHHH---Hhhhhhhhhhhh
Q psy14534 42 INEEILQRISHLETSSQTNVKTLFNITKQISGVEHLHSSMMELLESIETIENKVDYNLPTIQREI---SKLEFGVAQINS 118 (423)
Q Consensus 42 ~~~~~~~r~~~~e~~~~~l~~~~~n~s~q~~~~~k~~~s~~el~e~ve~~~~~~d~~ip~~~~EI---~e~e~~l~q~ts 118 (423)
+.+-...++..+|.....|++.+.+--.+- ..+-++..+...+..+..-|.+++|+ .++-..|.+.|.
T Consensus 209 q~dl~~~~~~~l~~~~~~Lq~~in~kR~~~---------se~~~~~~~~~~~~~~~~~~~i~~~~~~N~~Ls~~L~~~t~ 279 (1109)
T PRK10929 209 RSELAKKRSQQLDAYLQALRNQLNSQRQRE---------AERALESTELLAEQSGDLPKSIVAQFKINRELSQALNQQAQ 279 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 444455566666666666666654422222 12233444444333333334444443 233344445555
Q ss_pred hhhhhhhhhhhhHHHHHHHHhhhHHHHHHHH
Q psy14534 119 TLQVVNETRESDANYLKSTVSTLATLQEKVE 149 (423)
Q Consensus 119 ~l~~~~Ee~~n~s~~i~s~~~sis~lqek~~ 149 (423)
.+..+-.+...++..+.....+.++++|+++
T Consensus 280 ~~n~l~~~~~~~~~~l~~~~q~~~~i~eQi~ 310 (1109)
T PRK10929 280 RMDLIASQQRQAASQTLQVRQALNTLREQSQ 310 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555556666666666666665
No 183
>KOG0804|consensus
Probab=72.54 E-value=25 Score=37.82 Aligned_cols=51 Identities=20% Similarity=0.222 Sum_probs=31.0
Q ss_pred cchhHHHHHHhhhhhhhhhhhhh----hhhhhhhhhhHHHHHHHHhhhHHHHHHH
Q psy14534 98 NLPTIQREISKLEFGVAQINSTL----QVVNETRESDANYLKSTVSTLATLQEKV 148 (423)
Q Consensus 98 ~ip~~~~EI~e~e~~l~q~ts~l----~~~~Ee~~n~s~~i~s~~~sis~lqek~ 148 (423)
-+..+.+|.+.+++.-+.....+ .-+.|..+..+..+.++-+.|..|||++
T Consensus 390 k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQl 444 (493)
T KOG0804|consen 390 KLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREKEALGSKDEKITDLQEQL 444 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555554444444444 3344445556777888888898889886
No 184
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=72.52 E-value=21 Score=33.56 Aligned_cols=44 Identities=23% Similarity=0.265 Sum_probs=16.4
Q ss_pred HHHhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhhHHHHHHH
Q psy14534 105 EISKLEFGVAQINSTLQVVNETRESDANYLKSTVSTLATLQEKV 148 (423)
Q Consensus 105 EI~e~e~~l~q~ts~l~~~~Ee~~n~s~~i~s~~~sis~lqek~ 148 (423)
+|+..+..++...+.+..++++++.+..+|..+...+..+++..
T Consensus 110 ~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~ 153 (194)
T PF08614_consen 110 ELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDEL 153 (194)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444444444444444444444444443344433
No 185
>KOG0979|consensus
Probab=72.46 E-value=1.6e+02 Score=34.94 Aligned_cols=38 Identities=13% Similarity=0.253 Sum_probs=16.7
Q ss_pred HHHHHHhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHh
Q psy14534 102 IQREISKLEFGVAQINSTLQVVNETRESDANYLKSTVS 139 (423)
Q Consensus 102 ~~~EI~e~e~~l~q~ts~l~~~~Ee~~n~s~~i~s~~~ 139 (423)
++.|+++++++.+-++..-..+.-+.+++...++.+..
T Consensus 260 ~k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~ 297 (1072)
T KOG0979|consen 260 AKKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQR 297 (1072)
T ss_pred HHHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHH
Confidence 34444555555544444444444344444444433333
No 186
>PF15294 Leu_zip: Leucine zipper
Probab=72.34 E-value=45 Score=33.77 Aligned_cols=21 Identities=33% Similarity=0.526 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHhhhhhhhh
Q psy14534 36 MKTLQAINEEILQRISHLETS 56 (423)
Q Consensus 36 ~~~l~~~~~~~~~r~~~~e~~ 56 (423)
...|+..++.+-+|+.++|..
T Consensus 134 i~rLq~EN~kLk~rl~~le~~ 154 (278)
T PF15294_consen 134 IDRLQEENEKLKERLKSLEKQ 154 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444445555555444
No 187
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=72.32 E-value=73 Score=28.54 Aligned_cols=76 Identities=16% Similarity=0.218 Sum_probs=46.0
Q ss_pred HHHHHHhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhhHHHHHHHHH-HHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy14534 102 IQREISKLEFGVAQINSTLQVVNETRESDANYLKSTVSTLATLQEKVEA-NNIIMQALSDANYLKSTVSTLATLQEK 177 (423)
Q Consensus 102 ~~~EI~e~e~~l~q~ts~l~~~~Ee~~n~s~~i~s~~~sis~lqek~~~-~~kv~~le~Q~~~I~~l~~~v~~~~~q 177 (423)
+...+..++..+.+.+..+.-+++++.....++.+.-.....++.++.. ...+....++...++..++.+.+++.+
T Consensus 57 l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~tq~~~ 133 (151)
T PF11559_consen 57 LSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRKTQYEH 133 (151)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555566666666666666666666666556655544 334445566677777777777777665
No 188
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=72.21 E-value=21 Score=31.96 Aligned_cols=16 Identities=13% Similarity=0.333 Sum_probs=9.7
Q ss_pred hhHHHHHHhhcccccc
Q psy14534 56 SSQTNVKTLFNITKQI 71 (423)
Q Consensus 56 ~~~~l~~~~~n~s~q~ 71 (423)
+-+.|+++..++++||
T Consensus 37 Trr~m~~A~~~v~kql 52 (126)
T PF07889_consen 37 TRRSMSDAVASVSKQL 52 (126)
T ss_pred HHHhHHHHHHHHHHHH
Confidence 3455666666666665
No 189
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=72.17 E-value=45 Score=37.74 Aligned_cols=26 Identities=19% Similarity=0.170 Sum_probs=11.7
Q ss_pred hhhhHHHHHHHHHHHHHHhhhcchhH
Q psy14534 77 LHSSMMELLESIETIENKVDYNLPTI 102 (423)
Q Consensus 77 ~~~s~~el~e~ve~~~~~~d~~ip~~ 102 (423)
++.++.++-.....+...+-..=|.+
T Consensus 316 l~~ql~~l~~~~~~l~~~~~~~hP~v 341 (726)
T PRK09841 316 VDNQLNELTFREAEISQLYKKDHPTY 341 (726)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCchH
Confidence 34444444444444444444444544
No 190
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=72.11 E-value=38 Score=29.68 Aligned_cols=61 Identities=15% Similarity=0.135 Sum_probs=28.6
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhccccccchhhhhhhhHHHHHHHHHH
Q psy14534 20 KTKHHLEKEQHVINHKMKTLQAINEEILQRISHLETSSQTNVKTLFNITKQISGVEHLHSSMMELLESIET 90 (423)
Q Consensus 20 ~~~~~le~~~~~~~~~~~~l~~~~~~~~~r~~~~e~~~~~l~~~~~n~s~q~~~~~k~~~s~~el~e~ve~ 90 (423)
.++..|+.+++..+.-..+|.+..+. |+..++.|......++..+ +.|..++-+++..|+.
T Consensus 16 n~La~Le~slE~~K~S~~eL~kqkd~-------L~~~l~~L~~q~~s~~qr~---~eLqaki~ea~~~le~ 76 (107)
T PF09304_consen 16 NRLASLERSLEDEKTSQGELAKQKDQ-------LRNALQSLQAQNASRNQRI---AELQAKIDEARRNLED 76 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHhHHH-------HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 34555555555555555555444334 3444444443333333332 3445555555555554
No 191
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=72.10 E-value=11 Score=32.45 Aligned_cols=28 Identities=21% Similarity=0.243 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhHHH
Q psy14534 33 NHKMKTLQAINEEILQRISHLETSSQTN 60 (423)
Q Consensus 33 ~~~~~~l~~~~~~~~~r~~~~e~~~~~l 60 (423)
+..+..+++...+.+.||..+|.+...|
T Consensus 34 ~~~~~~l~~~~~~~~~Rl~~lE~~l~~L 61 (106)
T PF10805_consen 34 REDIEKLEERLDEHDRRLQALETKLEHL 61 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3444555445555555555555554444
No 192
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=71.46 E-value=1.3e+02 Score=31.26 Aligned_cols=39 Identities=18% Similarity=0.314 Sum_probs=19.6
Q ss_pred hhhhhHHHHHHHHHHHHHHhhhcchhH---HHHHHhhhhhhh
Q psy14534 76 HLHSSMMELLESIETIENKVDYNLPTI---QREISKLEFGVA 114 (423)
Q Consensus 76 k~~~s~~el~e~ve~~~~~~d~~ip~~---~~EI~e~e~~l~ 114 (423)
.+..++.++-..+..+-..+...=|.+ +.+|+.++..++
T Consensus 258 ~l~~~l~~le~~l~~l~~~y~~~hP~v~~l~~~i~~l~~~l~ 299 (444)
T TIGR03017 258 NLKTDIARAESKLAELSQRLGPNHPQYKRAQAEINSLKSQLN 299 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555555555 445555555443
No 193
>KOG1899|consensus
Probab=71.46 E-value=90 Score=35.18 Aligned_cols=106 Identities=13% Similarity=0.161 Sum_probs=58.4
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhccccccchhhhhhhhHHHHHHHHHHHHHHhhhc-
Q psy14534 20 KTKHHLEKEQHVINHKMKTLQAINEEILQRISHLETSSQTNVKTLFNITKQISGVEHLHSSMMELLESIETIENKVDYN- 98 (423)
Q Consensus 20 ~~~~~le~~~~~~~~~~~~l~~~~~~~~~r~~~~e~~~~~l~~~~~n~s~q~~~~~k~~~s~~el~e~ve~~~~~~d~~- 98 (423)
+.|+.||-=+.....+|+.-+.-.....=+..+||+.--.|-.++.++.=.+..+.|=.--+.+=+-.-|.+...++++
T Consensus 139 EKIrDLE~cie~kr~kLnatEEmLQqellsrtsLETqKlDLmaevSeLKLkltalEkeq~e~E~K~R~se~l~qevn~~k 218 (861)
T KOG1899|consen 139 EKIRDLETCIEEKRNKLNATEEMLQQELLSRTSLETQKLDLMAEVSELKLKLTALEKEQNETEKKLRLSENLMQEVNQSK 218 (861)
T ss_pred hhHHHHHHHHHHHHhhhchHHHHHHHHHHhhhhHHHHHhHHHHHHHHhHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHH
Confidence 4456666665555555544433322222244788888778889999988777777766655555555555666555422
Q ss_pred chhHHHHHHhhhhhhhhhhhhhhhhhh
Q psy14534 99 LPTIQREISKLEFGVAQINSTLQVVNE 125 (423)
Q Consensus 99 ip~~~~EI~e~e~~l~q~ts~l~~~~E 125 (423)
+.++-+|--.-|-.++.+-.+++-++|
T Consensus 219 v~e~~~erlqye~klkstk~e~a~L~E 245 (861)
T KOG1899|consen 219 VGEVVQERLQYETKLKSTKGEMAPLRE 245 (861)
T ss_pred HHHHHHHHHHHHhhcccccchhhhHHH
Confidence 233333333333344444444443333
No 194
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=71.15 E-value=1.3e+02 Score=30.82 Aligned_cols=45 Identities=20% Similarity=0.172 Sum_probs=26.1
Q ss_pred hcchhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhh
Q psy14534 97 YNLPTIQREISKLEFGVAQINSTLQVVNETRESDANYLKSTVSTL 141 (423)
Q Consensus 97 ~~ip~~~~EI~e~e~~l~q~ts~l~~~~Ee~~n~s~~i~s~~~si 141 (423)
..+.+++.++.+++.+++..-+.......++..+..++.+.-..+
T Consensus 214 ~~i~~L~~~l~~~~~~l~~l~~~~~~~~P~v~~l~~~i~~l~~~i 258 (362)
T TIGR01010 214 SLISTLEGELIRVQAQLAQLRSITPEQNPQVPSLQARIKSLRKQI 258 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHH
Confidence 345666666777776666555444444555555555555555555
No 195
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=71.11 E-value=1.6e+02 Score=35.48 Aligned_cols=17 Identities=41% Similarity=0.630 Sum_probs=10.2
Q ss_pred CcccccCCC-cCCCCCCC
Q psy14534 377 GGWWFSHCL-HANLNGKF 393 (423)
Q Consensus 377 GGWWy~~C~-~sNLNG~Y 393 (423)
.-|||--|. -+-.||..
T Consensus 567 ~~w~~~~~~~~~~~~Gl~ 584 (1109)
T PRK10929 567 LLWVFMICATFARPNGLF 584 (1109)
T ss_pred HHHHHHHHHHHcCCCCee
Confidence 457777654 34567764
No 196
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=70.64 E-value=27 Score=28.42 Aligned_cols=39 Identities=21% Similarity=0.406 Sum_probs=19.1
Q ss_pred HHHHHHHHH-HHHHhhhcchhHHHHHHhhhhhhhhhhhhhh
Q psy14534 82 MELLESIET-IENKVDYNLPTIQREISKLEFGVAQINSTLQ 121 (423)
Q Consensus 82 ~el~e~ve~-~~~~~d~~ip~~~~EI~e~e~~l~q~ts~l~ 121 (423)
+|+|+++|. +..++ .+|-=++=||.++.+...+++.+.+
T Consensus 3 lEv~ekLE~KiqqAv-dTI~LLQmEieELKEknn~l~~e~q 42 (79)
T COG3074 3 LEVFEKLEAKVQQAI-DTITLLQMEIEELKEKNNSLSQEVQ 42 (79)
T ss_pred hHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhHhHHHHH
Confidence 355555542 33444 3444455566655555554444443
No 197
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=70.59 E-value=5.6 Score=44.78 Aligned_cols=67 Identities=19% Similarity=0.259 Sum_probs=0.0
Q ss_pred HhhhhhhhhhHHHHHHhhccccccchhhhhhhhHH------HHHHHHHHHHHHhhhcchhHHHHHHhhhhhhh
Q psy14534 48 QRISHLETSSQTNVKTLFNITKQISGVEHLHSSMM------ELLESIETIENKVDYNLPTIQREISKLEFGVA 114 (423)
Q Consensus 48 ~r~~~~e~~~~~l~~~~~n~s~q~~~~~k~~~s~~------el~e~ve~~~~~~d~~ip~~~~EI~e~e~~l~ 114 (423)
..+..||....-+.+++-.+-.|+.++|.-...+. .-.+.++.+...++....++..+|++++..+.
T Consensus 399 ~~~~RLerq~~L~~kE~d~LR~~L~syd~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ele~~l~~l~~~l~ 471 (722)
T PF05557_consen 399 KLIRRLERQKALATKERDYLRAQLKSYDKEETTMNPSEQDTQRIKEIEDLEQLVDEYKAELEAQLEELEEELS 471 (722)
T ss_dssp -------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCchhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444666666677777776544332 11222555556666656666666666665543
No 198
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=70.59 E-value=22 Score=30.00 Aligned_cols=84 Identities=13% Similarity=0.118 Sum_probs=57.4
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhcccccc-------chhhhhhhhHHHHHHHHHHH
Q psy14534 19 LKTKHHLEKEQHVINHKMKTLQAINEEILQRISHLETSSQTNVKTLFNITKQI-------SGVEHLHSSMMELLESIETI 91 (423)
Q Consensus 19 ~~~~~~le~~~~~~~~~~~~l~~~~~~~~~r~~~~e~~~~~l~~~~~n~s~q~-------~~~~k~~~s~~el~e~ve~~ 91 (423)
..+|-.++.....+......+.+....+.+++..|+.+-..--.+.|.+-|.+ ..+..+...-.++++.+.-+
T Consensus 2 ~~EL~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L~~~ 81 (96)
T PF08647_consen 2 QTELVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQLKET 81 (96)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 45778888888888888888877788888999888888655555666555433 34444444445777777777
Q ss_pred HHHhhhcchhH
Q psy14534 92 ENKVDYNLPTI 102 (423)
Q Consensus 92 ~~~~d~~ip~~ 102 (423)
|..|-..|..+
T Consensus 82 E~~~~~~l~~~ 92 (96)
T PF08647_consen 82 EKEFVRKLKNL 92 (96)
T ss_pred HHHHHHHHHHh
Confidence 77764433333
No 199
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=69.97 E-value=35 Score=33.48 Aligned_cols=33 Identities=27% Similarity=0.354 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHH
Q psy14534 29 QHVINHKMKTLQAINEEILQRISHLETSSQTNV 61 (423)
Q Consensus 29 ~~~~~~~~~~l~~~~~~~~~r~~~~e~~~~~l~ 61 (423)
+..++.+..+++|.-.++.+-+..+|.+.+-|.
T Consensus 3 i~~ir~K~~~lek~k~~i~~e~~~~e~ee~~L~ 35 (230)
T PF10146_consen 3 IKEIRNKTLELEKLKNEILQEVESLENEEKCLE 35 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666667777766677777777766655443
No 200
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=69.89 E-value=1.9e+02 Score=32.24 Aligned_cols=52 Identities=21% Similarity=0.205 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhHHHH---------HHhhccccccchhhhhhhhHH
Q psy14534 31 VINHKMKTLQAINEEILQRISHLETSSQTNV---------KTLFNITKQISGVEHLHSSMM 82 (423)
Q Consensus 31 ~~~~~~~~l~~~~~~~~~r~~~~e~~~~~l~---------~~~~n~s~q~~~~~k~~~s~~ 82 (423)
.+.+++..+++...++.+|+..|+=+..+|- +++.+--+.++..+++-..+-
T Consensus 168 ~~~~~l~~~~~~~~e~~~~~d~L~fq~~Ele~~~l~~gE~e~L~~e~~rLsn~ekl~~~~~ 228 (557)
T COG0497 168 QARRELEDLQEKERERAQRADLLQFQLEELEELNLQPGEDEELEEERKRLSNSEKLAEAIQ 228 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhhHHHHHHHHH
Confidence 3444455555555555555555554444443 233333344444454444443
No 201
>PHA03332 membrane glycoprotein; Provisional
Probab=69.83 E-value=76 Score=37.67 Aligned_cols=53 Identities=17% Similarity=0.278 Sum_probs=32.8
Q ss_pred HHHHhhccccccchhhhhhhhHHHHHHHHHHHHHHhhhcchhHHHHHHhhhhhhhh
Q psy14534 60 NVKTLFNITKQISGVEHLHSSMMELLESIETIENKVDYNLPTIQREISKLEFGVAQ 115 (423)
Q Consensus 60 l~~~~~n~s~q~~~~~k~~~s~~el~e~ve~~~~~~d~~ip~~~~EI~e~e~~l~q 115 (423)
++.+|-+.++.| +++..++.++=..+-.|-.++|++|.++..-|+.+|.++.+
T Consensus 896 mksaIg~tNaAV---~~lsDai~klGnti~kisatl~~nI~avNgRIs~Led~VN~ 948 (1328)
T PHA03332 896 MASKIGGLNARV---DKTSDVITKLGDTIAKISATLDNNIRAVNGRVSDLEDQVNL 948 (1328)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHhhhHHHHHHHHHHhhHHHhcccHHHHHHHHHH
Confidence 444444444443 45555666666666666677777777777777777766653
No 202
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=69.70 E-value=2e+02 Score=32.58 Aligned_cols=132 Identities=14% Similarity=0.139 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhccccccchhhhhhhhHHHHHHHHHHHHHHhhhcchhHHH
Q psy14534 25 LEKEQHVINHKMKTLQAINEEILQRISHLETSSQTNVKTLFNITKQISGVEHLHSSMMELLESIETIENKVDYNLPTIQR 104 (423)
Q Consensus 25 le~~~~~~~~~~~~l~~~~~~~~~r~~~~e~~~~~l~~~~~n~s~q~~~~~k~~~s~~el~e~ve~~~~~~d~~ip~~~~ 104 (423)
++.+.....+-+.-|+++...+.+++...|.+....+.+. ++. + +......+++.+..+ +.
T Consensus 258 l~~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~-~~~----d---~~~ea~~~l~~~~~l-----------~~ 318 (726)
T PRK09841 258 IARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQR-DSV----D---LNLEAKAVLEQIVNV-----------DN 318 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCC----C---CCHHHHHHHHHHHHH-----------HH
Confidence 3334444444444454455555556666666555555432 110 1 111222333443333 33
Q ss_pred HHHhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy14534 105 EISKLEFGVAQINSTLQVVNETRESDANYLKSTVSTLATLQEKVEANNIIMQALSDANYLKSTVSTLATLQEKV 178 (423)
Q Consensus 105 EI~e~e~~l~q~ts~l~~~~Ee~~n~s~~i~s~~~sis~lqek~~~~~kv~~le~Q~~~I~~l~~~v~~~~~ql 178 (423)
.+..++...+...+.......++.++..+++++...++.++.++.... ..+.+...|.......+.++..|
T Consensus 319 ql~~l~~~~~~l~~~~~~~hP~v~~l~~~~~~L~~~~~~l~~~~~~~p---~~e~~~~~L~R~~~~~~~lY~~l 389 (726)
T PRK09841 319 QLNELTFREAEISQLYKKDHPTYRALLEKRQTLEQERKRLNKRVSAMP---STQQEVLRLSRDVEAGRAVYLQL 389 (726)
T ss_pred HHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444555666666666665555444443333332111 12333444444444445555543
No 203
>PHA03332 membrane glycoprotein; Provisional
Probab=69.53 E-value=2.5e+02 Score=33.64 Aligned_cols=71 Identities=10% Similarity=0.227 Sum_probs=48.6
Q ss_pred HHHHHHhhhhhhhhhHHHHHHhhccccccc-hhhhhhhhHHHHHHHHHHHHHHhhhcchhHHHHHHhhhhhhhhhhhhh
Q psy14534 43 NEEILQRISHLETSSQTNVKTLFNITKQIS-GVEHLHSSMMELLESIETIENKVDYNLPTIQREISKLEFGVAQINSTL 120 (423)
Q Consensus 43 ~~~~~~r~~~~e~~~~~l~~~~~n~s~q~~-~~~k~~~s~~el~e~ve~~~~~~d~~ip~~~~EI~e~e~~l~q~ts~l 120 (423)
+...-+||.++......+-+.|++++--|- .++.+|+- |..||+.+|..+..+..-|..+-+.+++.-.++
T Consensus 900 Ig~tNaAV~~lsDai~klGnti~kisatl~~nI~avNgR-------Is~Led~VN~r~~~v~~~intLA~ql~~~~~~~ 971 (1328)
T PHA03332 900 IGGLNARVDKTSDVITKLGDTIAKISATLDNNIRAVNGR-------VSDLEDQVNLRFLAVATNFNTLATQLKELGTTT 971 (1328)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHHhccc-------HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhH
Confidence 445566777777777777788888775554 66666665 345667777777777777777777666555444
No 204
>KOG0946|consensus
Probab=69.37 E-value=1.3e+02 Score=34.82 Aligned_cols=34 Identities=24% Similarity=0.089 Sum_probs=17.6
Q ss_pred HHHHHHhhhhhhhhhhhhhhhhhhhhhhhHHHHH
Q psy14534 102 IQREISKLEFGVAQINSTLQVVNETRESDANYLK 135 (423)
Q Consensus 102 ~~~EI~e~e~~l~q~ts~l~~~~Ee~~n~s~~i~ 135 (423)
...|+++++....-.+++|-..++.+.+.+.+..
T Consensus 742 ~~~e~k~l~~~q~~l~~~L~k~~~~~es~k~~~~ 775 (970)
T KOG0946|consen 742 ALSENKKLENDQELLTKELNKKNADIESFKATQR 775 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh
Confidence 3455555555555555555444555555444443
No 205
>KOG3478|consensus
Probab=68.99 E-value=50 Score=29.21 Aligned_cols=92 Identities=24% Similarity=0.276 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHH--HHhhccccccchhhhhhhhHHHHHHHHHHHHHHhhhcchhH
Q psy14534 25 LEKEQHVINHKMKTLQAINEEILQRISHLETSSQTNV--KTLFNITKQISGVEHLHSSMMELLESIETIENKVDYNLPTI 102 (423)
Q Consensus 25 le~~~~~~~~~~~~l~~~~~~~~~r~~~~e~~~~~l~--~~~~n~s~q~~~~~k~~~s~~el~e~ve~~~~~~d~~ip~~ 102 (423)
|.++++.+......|||..+.--.-...||..+.+.. .+=+++--..+.+-|+-|-+| +-++++---.-|++-|.=|
T Consensus 3 ~~~kmee~~~kyq~LQk~l~k~~~~rqkle~qL~Enk~V~~Eldlle~d~~VYKliGpvL-vkqel~EAr~nV~kRlefI 81 (120)
T KOG3478|consen 3 LQKKMEEEANKYQNLQKELEKYVESRQKLETQLQENKIVLEELDLLEEDSNVYKLIGPVL-VKQELEEARTNVGKRLEFI 81 (120)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcccchHHHHhcchh-hHHHHHHHHhhHHHHHHHH
Confidence 5567777777777777766555555566777655433 333344444445555555554 1122222223344444445
Q ss_pred HHHHHhhhhhhhhhh
Q psy14534 103 QREISKLEFGVAQIN 117 (423)
Q Consensus 103 ~~EI~e~e~~l~q~t 117 (423)
..||+..|-.++..-
T Consensus 82 ~~Eikr~e~~i~d~q 96 (120)
T KOG3478|consen 82 SKEIKRLENQIRDSQ 96 (120)
T ss_pred HHHHHHHHHHHHHHH
Confidence 566665555544433
No 206
>KOG0243|consensus
Probab=68.44 E-value=2.2e+02 Score=33.99 Aligned_cols=23 Identities=22% Similarity=0.268 Sum_probs=12.6
Q ss_pred hhhHHHHHHHHhhhHHHHHHHHH
Q psy14534 128 ESDANYLKSTVSTLATLQEKVEA 150 (423)
Q Consensus 128 ~n~s~~i~s~~~sis~lqek~~~ 150 (423)
..++.++..+...++.|=+++.-
T Consensus 535 ~~l~~~~~~s~~d~s~l~~kld~ 557 (1041)
T KOG0243|consen 535 TKLRRSLEESQDDLSSLFEKLDR 557 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Confidence 34455555555566655555553
No 207
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=68.39 E-value=31 Score=28.89 Aligned_cols=20 Identities=15% Similarity=0.493 Sum_probs=8.3
Q ss_pred HHhhccccccchhhhhhhhH
Q psy14534 62 KTLFNITKQISGVEHLHSSM 81 (423)
Q Consensus 62 ~~~~n~s~q~~~~~k~~~s~ 81 (423)
..|+.+...|..+.++|..+
T Consensus 15 ~~I~~i~~~v~~l~~l~~~~ 34 (117)
T smart00503 15 ANIQKISQNVAELQKLHEEL 34 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444433
No 208
>KOG2129|consensus
Probab=68.37 E-value=62 Score=34.71 Aligned_cols=13 Identities=23% Similarity=0.291 Sum_probs=5.0
Q ss_pred hhhhhhhhhHHHH
Q psy14534 49 RISHLETSSQTNV 61 (423)
Q Consensus 49 r~~~~e~~~~~l~ 61 (423)
|+++||.+-+-|+
T Consensus 209 rmdkLe~ekr~Lq 221 (552)
T KOG2129|consen 209 RMDKLEQEKRYLQ 221 (552)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 209
>KOG0972|consensus
Probab=67.89 E-value=63 Score=33.20 Aligned_cols=62 Identities=21% Similarity=0.281 Sum_probs=29.4
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHhhhcchhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhh
Q psy14534 73 GVEHLHSSMMELLESIETIENKVDYNLPTIQREISKLEFGVAQINSTLQVVNETRESDANYLKSTVSTL 141 (423)
Q Consensus 73 ~~~k~~~s~~el~e~ve~~~~~~d~~ip~~~~EI~e~e~~l~q~ts~l~~~~Ee~~n~s~~i~s~~~si 141 (423)
.|||+|.-+-.-||.+++=|-.. .++++-+=...+..+.+|+.++|-.+..+.-+.+-.+.+
T Consensus 249 ~Ldklh~eit~~LEkI~SREK~l-------NnqL~~l~q~fr~a~~~lse~~e~y~q~~~gv~~rT~~L 310 (384)
T KOG0972|consen 249 YLDKLHKEITKALEKIASREKSL-------NNQLASLMQKFRRATDTLSELREKYKQASVGVSSRTETL 310 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 44555555544444444444333 334444444445555555555555544444444444433
No 210
>PRK06800 fliH flagellar assembly protein H; Validated
Probab=67.82 E-value=71 Score=30.78 Aligned_cols=125 Identities=18% Similarity=0.288 Sum_probs=67.2
Q ss_pred CCCCCc--ccchhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhc-cccccc-h-hhhhhhh
Q psy14534 6 ILPDPR--YRNGKLFLKTKHHLEKEQHVINHKMKTLQAINEEILQRISHLETSSQTNVKTLFN-ITKQIS-G-VEHLHSS 80 (423)
Q Consensus 6 ~~~~~~--~r~~~~~~~~~~~le~~~~~~~~~~~~l~~~~~~~~~r~~~~e~~~~~l~~~~~n-~s~q~~-~-~~k~~~s 80 (423)
+..||- .-|++.|++++++|+.+|-.+.++.+.|.+..+.+.+.++.-+.+-.. ++..|- -..|++ + .+=|=..
T Consensus 36 ~~~d~~~L~~~Q~~L~~e~~~l~~eqQ~l~~er~~l~~er~~~~~~~~e~~~~~e~-~r~~fekekqq~~~~~t~~Lwde 114 (228)
T PRK06800 36 IQKDHEELLAQQKSLHKELNQLRQEQQKLERERQQLLADREQFQEHVQQQMKEIEA-ARQQFQKEQQETAYEWTELLWDQ 114 (228)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 334443 468999999999999999999999888877665555544333222111 111111 111111 0 0111122
Q ss_pred HHHHHHHH--HHHHHHhhhcchhHHHHHHhhhhhhhhhhhhh-----hhhhhhhhhhH
Q psy14534 81 MMELLESI--ETIENKVDYNLPTIQREISKLEFGVAQINSTL-----QVVNETRESDA 131 (423)
Q Consensus 81 ~~el~e~v--e~~~~~~d~~ip~~~~EI~e~e~~l~q~ts~l-----~~~~Ee~~n~s 131 (423)
-.+|-|.| -.++.+-=+-+|=++.-|-++=....++..+. .+++||-.+.+
T Consensus 115 Si~LAEkIV~QaiDtR~l~vlPiLt~viQ~LP~sFeKL~vTvHPET~e~lkeE~~~tK 172 (228)
T PRK06800 115 SFQLAEKIVNQAVDTRLLDVLPILTGIVQTLPTSFEKLNITVHPETFERIQEEKENTK 172 (228)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcchhHHHhheecCHHHHHHHHHhccCCH
Confidence 22333332 12333333456777777777777777766554 55555554444
No 211
>smart00038 COLFI Fibrillar collagens C-terminal domain. Found at C-termini of fibrillar collagens: Ephydatia muelleri procollagen EMF1alpha, vertebrate collagens alpha(1)III, alpha(1)II, alpha(2)V etc.
Probab=67.69 E-value=3.5 Score=40.31 Aligned_cols=27 Identities=11% Similarity=0.140 Sum_probs=21.5
Q ss_pred CCCceEEEECCCc-------ccccC-CceEEEEEe
Q psy14534 237 GHSGLQLISLGRS-------VLCDE-HHWMTIQRR 263 (423)
Q Consensus 237 ~~sGvY~I~p~~~-------v~Cd~-~GWTVIQrR 263 (423)
..+|.|.|.|..+ |||+| +|||-|.-.
T Consensus 42 ~~~G~YwIdPn~G~~~Da~~V~C~~~~g~Tcv~p~ 76 (232)
T smart00038 42 FKDGEYWVDPNQGCIRDAIKVFCNFETGETCVSPS 76 (232)
T ss_pred CCCCCEEECCCCCCCCCCeEEEEEeecCCeEEccc
Confidence 4799999999742 79998 579988653
No 212
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=67.63 E-value=78 Score=30.40 Aligned_cols=57 Identities=11% Similarity=0.130 Sum_probs=36.6
Q ss_pred hhhhHHHHHHHHHHHHHHhhhcchhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhHHH
Q psy14534 77 LHSSMMELLESIETIENKVDYNLPTIQREISKLEFGVAQINSTLQVVNETRESDANY 133 (423)
Q Consensus 77 ~~~s~~el~e~ve~~~~~~d~~ip~~~~EI~e~e~~l~q~ts~l~~~~Ee~~n~s~~ 133 (423)
+.+.+.++++.+|-=+.-.+..+-+++..|.+....+++..+.-+.+.-++......
T Consensus 11 v~a~~n~~~dk~EDP~~~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~ 67 (219)
T TIGR02977 11 VNSNLNALLDKAEDPEKMIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQ 67 (219)
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556667777777765556666677777777777777777666655555444444333
No 213
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=67.36 E-value=29 Score=34.28 Aligned_cols=35 Identities=26% Similarity=0.373 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhh
Q psy14534 31 VINHKMKTLQAINEEILQRISHLETSSQTNVKTLF 65 (423)
Q Consensus 31 ~~~~~~~~l~~~~~~~~~r~~~~e~~~~~l~~~~~ 65 (423)
.++.++.++++..+++.+++-.||.+..++..++-
T Consensus 139 e~kekl~E~~~EkeeL~~eleele~e~ee~~erlk 173 (290)
T COG4026 139 ELKEKLEELQKEKEELLKELEELEAEYEEVQERLK 173 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666566666666666665555554443
No 214
>PRK11281 hypothetical protein; Provisional
Probab=67.31 E-value=1.4e+02 Score=35.79 Aligned_cols=6 Identities=33% Similarity=0.246 Sum_probs=3.0
Q ss_pred CCCCCC
Q psy14534 388 NLNGKF 393 (423)
Q Consensus 388 NLNG~Y 393 (423)
-.||..
T Consensus 600 ~~~Gl~ 605 (1113)
T PRK11281 600 RPNGVA 605 (1113)
T ss_pred CCCCee
Confidence 456643
No 215
>KOG0979|consensus
Probab=67.22 E-value=1.7e+02 Score=34.74 Aligned_cols=44 Identities=11% Similarity=0.158 Sum_probs=18.8
Q ss_pred HHHHHhhHHHHHHHH-----HHHHHHHHHHHHHHHHhhhhhhhhhHHHH
Q psy14534 18 FLKTKHHLEKEQHVI-----NHKMKTLQAINEEILQRISHLETSSQTNV 61 (423)
Q Consensus 18 ~~~~~~~le~~~~~~-----~~~~~~l~~~~~~~~~r~~~~e~~~~~l~ 61 (423)
+...|.-|+.++..+ +++.+++.+.+.++-+-++.|+.+...+.
T Consensus 227 ~~~~Ie~l~~k~~~v~y~~~~~ey~~~k~~~~r~k~~~r~l~k~~~pi~ 275 (1072)
T KOG0979|consen 227 KKSKIELLEKKKKWVEYKKHDREYNAYKQAKDRAKKELRKLEKEIKPIE 275 (1072)
T ss_pred HHHHHHHHHHhccccchHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 344444554444322 22334444444444444444444444443
No 216
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=67.20 E-value=11 Score=30.64 Aligned_cols=25 Identities=20% Similarity=0.155 Sum_probs=19.6
Q ss_pred hhhhhhhhHHHHHHhhccccccchh
Q psy14534 50 ISHLETSSQTNVKTLFNITKQISGV 74 (423)
Q Consensus 50 ~~~~e~~~~~l~~~~~n~s~q~~~~ 74 (423)
+|..|....+|.+++||+.-.|-.+
T Consensus 2 lrEqe~~i~~L~KENF~LKLrI~fL 26 (75)
T PF07989_consen 2 LREQEEQIDKLKKENFNLKLRIYFL 26 (75)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 4567788889999999998877543
No 217
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=67.19 E-value=1.6e+02 Score=30.37 Aligned_cols=74 Identities=12% Similarity=0.206 Sum_probs=41.0
Q ss_pred HHHHHhhhhhhhhhHHHHHHhhccccccchhhhhhhhHHHHHHHHHHHHHHhhhcchhHHHHHHhhhhhhhhhhhhhhhh
Q psy14534 44 EEILQRISHLETSSQTNVKTLFNITKQISGVEHLHSSMMELLESIETIENKVDYNLPTIQREISKLEFGVAQINSTLQVV 123 (423)
Q Consensus 44 ~~~~~r~~~~e~~~~~l~~~~~n~s~q~~~~~k~~~s~~el~e~ve~~~~~~d~~ip~~~~EI~e~e~~l~q~ts~l~~~ 123 (423)
+.+.++++.||.+-..|..+...+...-+++.+- +++| +.+-|+-| .+....|+.+.++|++.+-....-
T Consensus 163 e~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~Eek-EqqL-v~dcv~QL--------~~An~qia~LseELa~k~Ee~~rQ 232 (306)
T PF04849_consen 163 EALQEKLKSLEEENEQLRSEASQLKTETDTYEEK-EQQL-VLDCVKQL--------SEANQQIASLSEELARKTEENRRQ 232 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHH-HHHH-HHHHHHHh--------hhcchhHHHHHHHHHHHHHHHHHH
Confidence 3466678888888888877777766555544443 5554 44444433 333445555555555444444433
Q ss_pred hhhh
Q psy14534 124 NETR 127 (423)
Q Consensus 124 ~Ee~ 127 (423)
+|||
T Consensus 233 QEEI 236 (306)
T PF04849_consen 233 QEEI 236 (306)
T ss_pred HHHH
Confidence 4443
No 218
>KOG4677|consensus
Probab=67.00 E-value=1e+02 Score=33.45 Aligned_cols=62 Identities=11% Similarity=0.101 Sum_probs=35.2
Q ss_pred HHHHHhhhcchhHHHHHHhhhhhhhhhhhhh--hhhhhhhhhhHHHHHHHHhhhHHHHHHHHHHHH
Q psy14534 90 TIENKVDYNLPTIQREISKLEFGVAQINSTL--QVVNETRESDANYLKSTVSTLATLQEKVEANNI 153 (423)
Q Consensus 90 ~~~~~~d~~ip~~~~EI~e~e~~l~q~ts~l--~~~~Ee~~n~s~~i~s~~~sis~lqek~~~~~k 153 (423)
.+++..-..--..++-|...+.+|.++.+.| ...++.+..+-.-.+.....+ +|-++.+.+.
T Consensus 387 ~~~~~~~r~~~~~qski~dk~~el~kl~~~l~~r~~~~s~~~l~~~~~qLt~tl--~qkq~~le~v 450 (554)
T KOG4677|consen 387 AEGTFSSRVNLKKQSKIPDKQYELTKLAARLKLRAWNDSVDALFTTKNQLTYTL--KQKQIGLERV 450 (554)
T ss_pred HhhhhhhhccchhhccCcchHHHHHHHHHHHHHHhhhhhHHHHhchhHHHHHHH--HHHHHHHHHH
Confidence 3334443444556777888888888888877 334444444444444455555 5555544444
No 219
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=67.00 E-value=9.4 Score=41.22 Aligned_cols=35 Identities=14% Similarity=0.244 Sum_probs=16.4
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy14534 20 KTKHHLEKEQHVINHKMKTLQAINEEILQRISHLE 54 (423)
Q Consensus 20 ~~~~~le~~~~~~~~~~~~l~~~~~~~~~r~~~~e 54 (423)
+.+..|+..+..+..+++.++.....++.+++.|+
T Consensus 71 ~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~ 105 (525)
T TIGR02231 71 ERLAELRKQIRELEAELRDLEDRGDALKALAKFLE 105 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555445444444444444444443
No 220
>KOG0239|consensus
Probab=66.53 E-value=2.1e+02 Score=32.52 Aligned_cols=22 Identities=23% Similarity=0.128 Sum_probs=11.9
Q ss_pred CCeeEEEeeEEEEeccCCcccc
Q psy14534 315 GKAWYAEYDTFSVASESEGYRL 336 (423)
Q Consensus 315 g~~~~a~Y~~F~Vg~e~~~Y~L 336 (423)
|......-..+.|++.++-..|
T Consensus 476 ~~~~V~~~t~~~V~s~~~v~~l 497 (670)
T KOG0239|consen 476 GNLMVPLLTVIKVGSSEEVDIL 497 (670)
T ss_pred CceecccceEEecCCHHHHHHH
Confidence 4444555555666665555544
No 221
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=66.49 E-value=1.3e+02 Score=29.17 Aligned_cols=18 Identities=22% Similarity=0.340 Sum_probs=8.6
Q ss_pred hhhhhhhhHHHHHHHHHH
Q psy14534 73 GVEHLHSSMMELLESIET 90 (423)
Q Consensus 73 ~~~k~~~s~~el~e~ve~ 90 (423)
.++.+..|.-+|+...+.
T Consensus 84 dL~s~E~sfsdl~~ryek 101 (207)
T PF05010_consen 84 DLNSLEKSFSDLHKRYEK 101 (207)
T ss_pred HHHHHHhhHHHHHHHHHH
Confidence 444455555555444443
No 222
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=66.43 E-value=38 Score=30.37 Aligned_cols=49 Identities=8% Similarity=0.255 Sum_probs=22.4
Q ss_pred HHHHHhhhhhhhhhHHHHHHhhccccccchhhhhhhhHHHHHHHHHHHHHHh
Q psy14534 44 EEILQRISHLETSSQTNVKTLFNITKQISGVEHLHSSMMELLESIETIENKV 95 (423)
Q Consensus 44 ~~~~~r~~~~e~~~~~l~~~~~n~s~q~~~~~k~~~s~~el~e~ve~~~~~~ 95 (423)
.+++.+|+....-++.+.++++-+...+ ..++.-+-.+-..|+.||.++
T Consensus 71 d~vd~klDe~~ei~~~i~~eV~~v~~dv---~~i~~dv~~v~~~V~~Le~ki 119 (126)
T PF07889_consen 71 DRVDDKLDEQKEISKQIKDEVTEVREDV---SQIGDDVDSVQQMVEGLEGKI 119 (126)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHH
Confidence 3344444433333444444444443333 334445555555555555555
No 223
>PF13514 AAA_27: AAA domain
Probab=66.35 E-value=2.8e+02 Score=33.02 Aligned_cols=19 Identities=11% Similarity=0.326 Sum_probs=12.5
Q ss_pred CCccCcCCCCCCCcccCCC
Q psy14534 346 SDAMTYQNNMKFSTIDRDN 364 (423)
Q Consensus 346 gDsl~~hng~~FST~DrDn 364 (423)
+-+|++--.-.|-+||...
T Consensus 1050 ~~~lP~IlDD~fvnfDd~R 1068 (1111)
T PF13514_consen 1050 GEPLPFILDDIFVNFDDER 1068 (1111)
T ss_pred CCCCcEEeeCCccccCHHH
Confidence 4555665666788888653
No 224
>KOG4438|consensus
Probab=65.30 E-value=2e+02 Score=30.94 Aligned_cols=34 Identities=9% Similarity=0.086 Sum_probs=19.8
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy14534 19 LKTKHHLEKEQHVINHKMKTLQAINEEILQRISH 52 (423)
Q Consensus 19 ~~~~~~le~~~~~~~~~~~~l~~~~~~~~~r~~~ 52 (423)
-++...|--...+++.+..++.+..++.|++...
T Consensus 137 ~~q~eslle~~~q~da~~qq~~~ele~~d~~~~~ 170 (446)
T KOG4438|consen 137 IQQLESLLELRKQLDAKYQQALKELERFDEDVEE 170 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 3455555566666666666666666665555433
No 225
>KOG2991|consensus
Probab=65.09 E-value=1.6e+02 Score=29.78 Aligned_cols=100 Identities=13% Similarity=0.190 Sum_probs=59.7
Q ss_pred hhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhccccccc-hhhh-----hhhhHHHHHHHH
Q psy14534 15 GKLFLKTKHHLEKEQHVINHKMKTLQAINEEILQRISHLETSSQTNVKTLFNITKQIS-GVEH-----LHSSMMELLESI 88 (423)
Q Consensus 15 ~~~~~~~~~~le~~~~~~~~~~~~l~~~~~~~~~r~~~~e~~~~~l~~~~~n~s~q~~-~~~k-----~~~s~~el~e~v 88 (423)
.||+...|..|-.+...|+.++.+-+.+-.-+--|+-..|-+-.++...|..+..|.+ +.-- |.--+..+|..+
T Consensus 103 ~rll~d~i~nLk~se~~lkqQ~~~a~RrE~ilv~rlA~kEQEmqe~~sqi~~lK~qq~Ps~~qlR~~llDPAinl~F~rl 182 (330)
T KOG2991|consen 103 TRLLSDDITNLKESEEKLKQQQQEAARRENILVMRLATKEQEMQECTSQIQYLKQQQQPSVAQLRSTLLDPAINLFFLRL 182 (330)
T ss_pred cchhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHhhChHHHHHHHHH
Confidence 5778888888887777777766555322223445777778777777777777665543 2111 222333555555
Q ss_pred HHHHHHhhhcchhHHHHHHhhhhhhh
Q psy14534 89 ETIENKVDYNLPTIQREISKLEFGVA 114 (423)
Q Consensus 89 e~~~~~~d~~ip~~~~EI~e~e~~l~ 114 (423)
-+.=+.-++-|.+.++||+--.|..-
T Consensus 183 K~ele~tk~Klee~QnelsAwkFTPd 208 (330)
T KOG2991|consen 183 KGELEQTKDKLEEAQNELSAWKFTPD 208 (330)
T ss_pred HHHHHHHHHHHHHHHhhhheeeecCC
Confidence 55555555556666666665555444
No 226
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=64.99 E-value=87 Score=31.62 Aligned_cols=76 Identities=14% Similarity=0.189 Sum_probs=42.9
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHh--hhcchhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhhHHHHHHH
Q psy14534 73 GVEHLHSSMMELLESIETIENKV--DYNLPTIQREISKLEFGVAQINSTLQVVNETRESDANYLKSTVSTLATLQEKV 148 (423)
Q Consensus 73 ~~~k~~~s~~el~e~ve~~~~~~--d~~ip~~~~EI~e~e~~l~q~ts~l~~~~Ee~~n~s~~i~s~~~sis~lqek~ 148 (423)
.++=|+..+.||++.++.++..- ..-.-...+.|...+.++.....+|.....++++++..|.++...++.|+.++
T Consensus 167 kV~WLR~~L~Ei~Ea~e~~~~~~~~e~eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~ 244 (269)
T PF05278_consen 167 KVDWLRSKLEEILEAKEIYDQHETREEEKEEKDRKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMES 244 (269)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667777778888877765311 11112233444444555555555555555666666666666666665555555
No 227
>KOG0962|consensus
Probab=64.94 E-value=3.3e+02 Score=33.31 Aligned_cols=30 Identities=23% Similarity=0.113 Sum_probs=14.1
Q ss_pred hhhhhhhHHHHHHHHhhhHHHHHHHHHHHH
Q psy14534 124 NETRESDANYLKSTVSTLATLQEKVEANNI 153 (423)
Q Consensus 124 ~Ee~~n~s~~i~s~~~sis~lqek~~~~~k 153 (423)
+++...++..-.......+.+|.+......
T Consensus 331 ~~e~~~l~~~k~~~~~~~~~lq~e~~~~~~ 360 (1294)
T KOG0962|consen 331 NEERSSLIQLKTELDLEQSELQAEAEFHQE 360 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444445555555554333
No 228
>KOG4593|consensus
Probab=64.87 E-value=2.6e+02 Score=31.97 Aligned_cols=36 Identities=19% Similarity=0.213 Sum_probs=16.9
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHH---HhH-HHHHHHhccC
Q psy14534 157 ALSDANYLKSTVSTLATLQEKVE---ANN-IIMQALRNGR 192 (423)
Q Consensus 157 le~Q~~~I~~l~~~v~~~~~ql~---~q~-~l~~kl~~~~ 192 (423)
+.+..+.+...+..+.++...+. ..+ .+..+|..+-
T Consensus 280 LqeE~e~Lqskl~~~~~l~~~~~~LELeN~~l~tkL~rwE 319 (716)
T KOG4593|consen 280 LQEELEGLQSKLGRLEKLQSTLLGLELENEDLLTKLQRWE 319 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 34445555555555555544431 222 4555555543
No 229
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=64.72 E-value=1.8e+02 Score=30.29 Aligned_cols=22 Identities=0% Similarity=0.084 Sum_probs=11.1
Q ss_pred HHHHhhHHHHHHHHHHHHHHHH
Q psy14534 19 LKTKHHLEKEQHVINHKMKTLQ 40 (423)
Q Consensus 19 ~~~~~~le~~~~~~~~~~~~l~ 40 (423)
..++..++.....+..+++.++
T Consensus 95 ~~~~~~~~~~l~~~~~q~~~l~ 116 (421)
T TIGR03794 95 RERLQESYQKLTQLQEQLEEVR 116 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555554443
No 230
>PRK11519 tyrosine kinase; Provisional
Probab=64.46 E-value=79 Score=35.76 Aligned_cols=23 Identities=9% Similarity=0.249 Sum_probs=10.6
Q ss_pred hHHHHHhhHHHHHHHHHHHHHHH
Q psy14534 17 LFLKTKHHLEKEQHVINHKMKTL 39 (423)
Q Consensus 17 ~~~~~~~~le~~~~~~~~~~~~l 39 (423)
|+.+|+..++.+.....+.+...
T Consensus 271 fL~~ql~~l~~~L~~aE~~l~~f 293 (719)
T PRK11519 271 FLAQQLPEVRSRLDVAENKLNAF 293 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444433
No 231
>KOG0288|consensus
Probab=64.31 E-value=72 Score=34.12 Aligned_cols=50 Identities=14% Similarity=0.099 Sum_probs=34.7
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhccc
Q psy14534 19 LKTKHHLEKEQHVINHKMKTLQAINEEILQRISHLETSSQTNVKTLFNIT 68 (423)
Q Consensus 19 ~~~~~~le~~~~~~~~~~~~l~~~~~~~~~r~~~~e~~~~~l~~~~~n~s 68 (423)
+..|-+-|+.++.+..|+..+..--+-+-..+-.+|+++++|++++--+.
T Consensus 19 ~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~ 68 (459)
T KOG0288|consen 19 NTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLN 68 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566667777777777766655555666677788888888888875543
No 232
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=64.27 E-value=20 Score=36.53 Aligned_cols=65 Identities=18% Similarity=0.201 Sum_probs=33.3
Q ss_pred HHHHHhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhhHHHHHHH-HHHHHHHHHHhhHHHHHHH
Q psy14534 103 QREISKLEFGVAQINSTLQVVNETRESDANYLKSTVSTLATLQEKV-EANNIIMQALSDANYLKST 167 (423)
Q Consensus 103 ~~EI~e~e~~l~q~ts~l~~~~Ee~~n~s~~i~s~~~sis~lqek~-~~~~kv~~le~Q~~~I~~l 167 (423)
.+|-.+++.++++...++..++++....-...+..--.+..++++. .+..++.....++++|+++
T Consensus 70 E~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~kt 135 (314)
T PF04111_consen 70 EKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLRKT 135 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3333444444444444444444444444555555544443344433 3466666777788888877
No 233
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=63.91 E-value=2e+02 Score=30.51 Aligned_cols=79 Identities=10% Similarity=0.143 Sum_probs=39.1
Q ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh--------hhHHHHHHhhccccccc----hhhhhhhhHHHH
Q psy14534 17 LFLKTKHHLEKEQHVINHKMKTLQAINEEILQRISHLET--------SSQTNVKTLFNITKQIS----GVEHLHSSMMEL 84 (423)
Q Consensus 17 ~~~~~~~~le~~~~~~~~~~~~l~~~~~~~~~r~~~~e~--------~~~~l~~~~~n~s~q~~----~~~k~~~s~~el 84 (423)
.+.++|.+++........++..++.....+...+..... ....+...+..+..+++ ++-.=|-.+.++
T Consensus 201 ~~~~~l~~l~~~l~~~~~~l~~~~a~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~l~~~y~~~hP~v~~l 280 (498)
T TIGR03007 201 DYYSEISEAQEELEAARLELNEAIAQRDALKRQLGGEEPVLLAGSSVANSELDGRIEALEKQLDALRLRYTDKHPDVIAT 280 (498)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCcccccCCCchHHHHHHHHHHHHHHHHHhcccChHHHHH
Confidence 345566666666666666665555544444443331000 01122222333333333 233446777777
Q ss_pred HHHHHHHHHHh
Q psy14534 85 LESIETIENKV 95 (423)
Q Consensus 85 ~e~ve~~~~~~ 95 (423)
-..++.++..+
T Consensus 281 ~~qi~~l~~~l 291 (498)
T TIGR03007 281 KREIAQLEEQK 291 (498)
T ss_pred HHHHHHHHHHH
Confidence 77777777765
No 234
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=63.46 E-value=1.8e+02 Score=29.78 Aligned_cols=93 Identities=20% Similarity=0.211 Sum_probs=55.4
Q ss_pred hHHHHHHHHHHHHHHhhhcchhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Q psy14534 80 SMMELLESIETIENKVDYNLPTIQREISKLEFGVAQINSTLQVVNETRESDANYLKSTVSTLATLQEKVEANNIIMQALS 159 (423)
Q Consensus 80 s~~el~e~ve~~~~~~d~~ip~~~~EI~e~e~~l~q~ts~l~~~~Ee~~n~s~~i~s~~~sis~lqek~~~~~kv~~le~ 159 (423)
|.-+|-+++--+|+|| +|.=...+|+..+=+.+-=++.-++-.|-.+-+++..++.+ ...|+..++.
T Consensus 78 s~r~lk~~l~evEeky-----------rkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re--~~eK~~elEr 144 (302)
T PF09738_consen 78 SLRDLKDSLAEVEEKY-----------RKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQRE--YREKIRELER 144 (302)
T ss_pred cHHHHHHHHHHHHHHH-----------HHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence 4445555555555555 22233445555555666667777788888888888444444 4566666677
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy14534 160 DANYLKSTVSTLATLQEKVEANNIIM 185 (423)
Q Consensus 160 Q~~~I~~l~~~v~~~~~ql~~q~~l~ 185 (423)
+-..+..+-..+..+..+|.....+.
T Consensus 145 ~K~~~d~L~~e~~~Lre~L~~rdeli 170 (302)
T PF09738_consen 145 QKRAHDSLREELDELREQLKQRDELI 170 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777766666676666664444333
No 235
>KOG4460|consensus
Probab=62.99 E-value=59 Score=36.06 Aligned_cols=18 Identities=22% Similarity=0.429 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHhh
Q psy14534 33 NHKMKTLQAINEEILQRI 50 (423)
Q Consensus 33 ~~~~~~l~~~~~~~~~r~ 50 (423)
+++++.+.+..+++++|+
T Consensus 608 ~eer~~i~e~a~~La~R~ 625 (741)
T KOG4460|consen 608 REERKSLREMAERLADRY 625 (741)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333344444444444444
No 236
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=62.91 E-value=99 Score=26.55 Aligned_cols=45 Identities=20% Similarity=0.230 Sum_probs=27.2
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhh
Q psy14534 21 TKHHLEKEQHVINHKMKTLQAINEEILQRISHLETSSQTNVKTLF 65 (423)
Q Consensus 21 ~~~~le~~~~~~~~~~~~l~~~~~~~~~r~~~~e~~~~~l~~~~~ 65 (423)
.-+++...+..|+.+..+.+..++.+..|=..|+.....|.....
T Consensus 5 kkre~~~~~~~l~~kr~e~~~~~~~~~~~e~~L~~~e~~l~~~~~ 49 (126)
T PF13863_consen 5 KKREMFLVQLALDTKREEIERREEQLKQREEELEKKEQELEEDVI 49 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555666666666666666666666666666666655443
No 237
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=62.86 E-value=12 Score=38.99 Aligned_cols=11 Identities=18% Similarity=0.573 Sum_probs=0.4
Q ss_pred hhHHHHHHhhh
Q psy14534 100 PTIQREISKLE 110 (423)
Q Consensus 100 p~~~~EI~e~e 110 (423)
.+++.||+.+.
T Consensus 108 ~elkkEie~IK 118 (370)
T PF02994_consen 108 KELKKEIENIK 118 (370)
T ss_dssp ----------H
T ss_pred HHHHHHHHHHh
Confidence 33444444333
No 238
>PF13514 AAA_27: AAA domain
Probab=62.75 E-value=3.3e+02 Score=32.50 Aligned_cols=39 Identities=18% Similarity=0.283 Sum_probs=19.4
Q ss_pred hhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHH
Q psy14534 100 PTIQREISKLEFGVAQINSTLQVVNETRESDANYLKSTV 138 (423)
Q Consensus 100 p~~~~EI~e~e~~l~q~ts~l~~~~Ee~~n~s~~i~s~~ 138 (423)
+++..+|.+++..+..+..++..+.+++..+...+..+.
T Consensus 892 ~~l~~~l~~l~~~l~~l~~~~~~l~~~~~~~~~~l~~l~ 930 (1111)
T PF13514_consen 892 DELEAELEELEEELEELEEELEELQEERAELEQELEALE 930 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444555555555555555555555555555554443
No 239
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=62.43 E-value=2.4e+02 Score=30.80 Aligned_cols=12 Identities=8% Similarity=0.014 Sum_probs=5.1
Q ss_pred HHhhHHHHHHHH
Q psy14534 157 ALSDANYLKSTV 168 (423)
Q Consensus 157 le~Q~~~I~~l~ 168 (423)
+.+|+..|.++.
T Consensus 170 L~~qi~~L~~~n 181 (475)
T PRK10361 170 LAHEIRNLQQLN 181 (475)
T ss_pred HHHHHHHHHHHH
Confidence 344444444433
No 240
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=62.30 E-value=61 Score=26.51 Aligned_cols=29 Identities=10% Similarity=0.256 Sum_probs=13.2
Q ss_pred hhhhhhhhhhhhhhhhhhHHHHHHHHhhh
Q psy14534 113 VAQINSTLQVVNETRESDANYLKSTVSTL 141 (423)
Q Consensus 113 l~q~ts~l~~~~Ee~~n~s~~i~s~~~si 141 (423)
+++++..+..+++++..+..++..+....
T Consensus 28 l~~~~~ti~~l~~~~~~i~~e~~~ll~~~ 56 (90)
T PF06103_consen 28 LDEVNKTIDTLQEQVDPITKEINDLLHNT 56 (90)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444
No 241
>KOG4552|consensus
Probab=62.21 E-value=85 Score=30.77 Aligned_cols=30 Identities=30% Similarity=0.348 Sum_probs=22.3
Q ss_pred HHHHHHhhhhhhhhhHHHHHHhhccccccc
Q psy14534 43 NEEILQRISHLETSSQTNVKTLFNITKQIS 72 (423)
Q Consensus 43 ~~~~~~r~~~~e~~~~~l~~~~~n~s~q~~ 72 (423)
.|++++-++.||.-.++|.+.+.|--+|..
T Consensus 10 rerLL~~~dDlE~i~kelie~l~~~~~qk~ 39 (272)
T KOG4552|consen 10 RERLLESADDLEHIVKELIETLINRDKQKM 39 (272)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHhhhHHHH
Confidence 356777778888888888888887666654
No 242
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=62.07 E-value=1.3e+02 Score=27.53 Aligned_cols=20 Identities=20% Similarity=0.370 Sum_probs=11.1
Q ss_pred hhhhhHHHHHHHHHHHHHHh
Q psy14534 76 HLHSSMMELLESIETIENKV 95 (423)
Q Consensus 76 k~~~s~~el~e~ve~~~~~~ 95 (423)
.+.+.+..+-..+..|+...
T Consensus 56 ~L~~el~~lt~el~~L~~EL 75 (140)
T PF10473_consen 56 TLEEELEELTSELNQLELEL 75 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35555555555555555555
No 243
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=61.94 E-value=1.8e+02 Score=29.31 Aligned_cols=52 Identities=13% Similarity=0.302 Sum_probs=28.7
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhccccccc
Q psy14534 21 TKHHLEKEQHVINHKMKTLQAINEEILQRISHLETSSQTNVKTLFNITKQIS 72 (423)
Q Consensus 21 ~~~~le~~~~~~~~~~~~l~~~~~~~~~r~~~~e~~~~~l~~~~~n~s~q~~ 72 (423)
....++....-|+.+..+++.......+++..+..+.+.|.++|.-+..+|.
T Consensus 46 ~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~ 97 (265)
T COG3883 46 EKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIV 97 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444555666666666666666666665555554
No 244
>KOG4302|consensus
Probab=61.78 E-value=2.6e+02 Score=31.82 Aligned_cols=47 Identities=15% Similarity=0.232 Sum_probs=25.8
Q ss_pred hhhhhhhHHHHHHHHHHHHHHhhhcchhHHHHHHhhhhhhhhhhhhh
Q psy14534 74 VEHLHSSMMELLESIETIENKVDYNLPTIQREISKLEFGVAQINSTL 120 (423)
Q Consensus 74 ~~k~~~s~~el~e~ve~~~~~~d~~ip~~~~EI~e~e~~l~q~ts~l 120 (423)
.++.-+++.+.|++|.---+-+-+...+-++|++++-..+.++...|
T Consensus 94 ~~k~e~tLke~l~~l~~~le~lr~qk~eR~~ef~el~~qie~l~~~l 140 (660)
T KOG4302|consen 94 SDKIEGTLKEQLESLKPYLEGLRKQKDERRAEFKELYHQIEKLCEEL 140 (660)
T ss_pred ccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45556666676666655444444444455555555555555554444
No 245
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=61.11 E-value=1e+02 Score=29.31 Aligned_cols=87 Identities=16% Similarity=0.162 Sum_probs=41.4
Q ss_pred hhhhhhhHHHHHHhhccccccchhhhhhhhH---HHHHHHHHHHHHHhhhcchhHHHHHHhhhhhhhhhhhhhhhhhhhh
Q psy14534 51 SHLETSSQTNVKTLFNITKQISGVEHLHSSM---MELLESIETIENKVDYNLPTIQREISKLEFGVAQINSTLQVVNETR 127 (423)
Q Consensus 51 ~~~e~~~~~l~~~~~n~s~q~~~~~k~~~s~---~el~e~ve~~~~~~d~~ip~~~~EI~e~e~~l~q~ts~l~~~~Ee~ 127 (423)
.++-.+...|-+-.|||.--.+++++|=.=- ..+++....+|.++ .+..-|-.++|..++.+-.++..++++.
T Consensus 72 ~~~~~tl~~LE~~GFnV~~l~~RL~kLL~lk~~~~~~~e~~k~le~~~----~~~~~~~~~~e~~i~~Le~ki~el~~~~ 147 (190)
T PF05266_consen 72 ESLMKTLSELEEHGFNVKFLRSRLNKLLSLKDDQEKLLEERKKLEKKI----EEKEAELKELESEIKELEMKILELQRQA 147 (190)
T ss_pred HHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH----HHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3344445666677888887777777632111 13333333333333 3333344444444444444444444444
Q ss_pred hhhHHHHHHHHhhh
Q psy14534 128 ESDANYLKSTVSTL 141 (423)
Q Consensus 128 ~n~s~~i~s~~~si 141 (423)
..+.....++..+|
T Consensus 148 ~~~~~~ke~~~~ei 161 (190)
T PF05266_consen 148 AKLKEKKEAKDKEI 161 (190)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333334
No 246
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=61.05 E-value=11 Score=31.29 Aligned_cols=18 Identities=11% Similarity=0.220 Sum_probs=7.6
Q ss_pred HHHHHhhhhhhhhhHHHH
Q psy14534 44 EEILQRISHLETSSQTNV 61 (423)
Q Consensus 44 ~~~~~r~~~~e~~~~~l~ 61 (423)
..+...++.++....+|.
T Consensus 22 ~~l~~~~~~~~~~~~eL~ 39 (106)
T PF01920_consen 22 QQLERQLRELELTLEELE 39 (106)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444443
No 247
>cd07307 BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Mutations in BAR containing proteins have been linked to diseases and their inactivation in cells leads to altered membrane dynamics. A BAR domain with an additional N-terminal amphipathic helix (an N-BAR) can drive membrane curvature. These N-BAR domains are found in amphiphysins and endophilins, among others. BAR domains are also frequently found alongside domains that determine lipid specificity, such as the Pleckstrin Homology (PH) and Phox Homology (PX) domains which are present in beta centaurins (ACAPs and ASAPs) and sorting nexins, respectively. A FES-CIP4 Homology (FCH) domain together with a coiled coil region is called the F-
Probab=60.82 E-value=1.2e+02 Score=26.63 Aligned_cols=42 Identities=14% Similarity=0.287 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhccccccc
Q psy14534 31 VINHKMKTLQAINEEILQRISHLETSSQTNVKTLFNITKQIS 72 (423)
Q Consensus 31 ~~~~~~~~l~~~~~~~~~r~~~~e~~~~~l~~~~~n~s~q~~ 72 (423)
.+++.++.|.+..+.+.+.+..+-.....++..+..+..+..
T Consensus 4 ~~~~~~~kl~k~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 45 (194)
T cd07307 4 ELEKLLKKLIKDTKKLLDSLKELPAAAEKLSEALQELGKELP 45 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 344556666666677777777777777777777777666654
No 248
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=60.73 E-value=1.2e+02 Score=29.61 Aligned_cols=58 Identities=17% Similarity=0.244 Sum_probs=39.9
Q ss_pred hhhhHHHHHHHHHHHHHHhhhcchhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhHHHH
Q psy14534 77 LHSSMMELLESIETIENKVDYNLPTIQREISKLEFGVAQINSTLQVVNETRESDANYL 134 (423)
Q Consensus 77 ~~~s~~el~e~ve~~~~~~d~~ip~~~~EI~e~e~~l~q~ts~l~~~~Ee~~n~s~~i 134 (423)
+.+.+.++++.+|-=+.-+|.-|-+.+.++.+....++++.+..+.+..+++.+...+
T Consensus 11 ~~a~~~~~~dk~EDp~~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~ 68 (225)
T COG1842 11 VKANINELLDKAEDPEKMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARA 68 (225)
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566677777777777777777777777777777777777776666666655554443
No 249
>PRK09343 prefoldin subunit beta; Provisional
Probab=60.71 E-value=1.1e+02 Score=26.99 Aligned_cols=47 Identities=17% Similarity=0.239 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhHHHHHHhhccc--cccchhhhhhhhHH
Q psy14534 36 MKTLQAINEEILQRISHLETSSQTNVKTLFNIT--KQISGVEHLHSSMM 82 (423)
Q Consensus 36 ~~~l~~~~~~~~~r~~~~e~~~~~l~~~~~n~s--~q~~~~~k~~~s~~ 82 (423)
+..+++...-+......|+.+.+++...+--++ ..-+.+-|.=|.|+
T Consensus 16 ~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~L~~d~~VYk~VG~vl 64 (121)
T PRK09343 16 LQQLQQQLERLLQQKSQIDLELREINKALEELEKLPDDTPIYKIVGNLL 64 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhhHHH
Confidence 444444455556666666666666553332222 13345566666665
No 250
>PF10157 DUF2365: Uncharacterized conserved protein (DUF2365); InterPro: IPR019314 This entry is found in a highly conserved family of proteins which have no known function.
Probab=60.14 E-value=46 Score=30.66 Aligned_cols=61 Identities=16% Similarity=0.340 Sum_probs=35.4
Q ss_pred hhhhhhhhHHHHHHhhccccccc-hhhhhhhhHHHHH----HHHHHHHHHhhhcchhHHHHHHhhh
Q psy14534 50 ISHLETSSQTNVKTLFNITKQIS-GVEHLHSSMMELL----ESIETIENKVDYNLPTIQREISKLE 110 (423)
Q Consensus 50 ~~~~e~~~~~l~~~~~n~s~q~~-~~~k~~~s~~el~----e~ve~~~~~~d~~ip~~~~EI~e~e 110 (423)
|..||.+-+.++....++.+.+. .|+..-+.+++.+ ++|+.+-+++|.++.....=|.+-|
T Consensus 54 L~~LE~~a~~ia~svd~ll~~L~~~L~~mS~~Tv~~~~~y~~sv~~~cdsvD~sik~~y~liakce 119 (149)
T PF10157_consen 54 LHDLERDAQAIAESVDSLLRSLRSSLHSMSAITVEHMETYKDSVDKLCDSVDASIKSMYTLIAKCE 119 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666555 5555555554433 3566777777776666554444443
No 251
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=59.97 E-value=1.8e+02 Score=31.79 Aligned_cols=17 Identities=12% Similarity=0.126 Sum_probs=7.8
Q ss_pred hhhhhhhhhhhHHHHHH
Q psy14534 120 LQVVNETRESDANYLKS 136 (423)
Q Consensus 120 l~~~~Ee~~n~s~~i~s 136 (423)
|+=++|.++.....|..
T Consensus 142 l~Pl~e~l~~f~~~v~~ 158 (475)
T PRK10361 142 LSPLREQLDGFRRQVQD 158 (475)
T ss_pred HhhHHHHHHHHHHHHHH
Confidence 34444444444444443
No 252
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=59.71 E-value=2.3e+02 Score=29.73 Aligned_cols=95 Identities=22% Similarity=0.325 Sum_probs=45.5
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHhh---hhhhhhhHHHHHHhhcccc---ccc-hhhhhhhhHHHHHHHHHHHHHH
Q psy14534 22 KHHLEKEQHVINHKMKTLQAINEEILQRI---SHLETSSQTNVKTLFNITK---QIS-GVEHLHSSMMELLESIETIENK 94 (423)
Q Consensus 22 ~~~le~~~~~~~~~~~~l~~~~~~~~~r~---~~~e~~~~~l~~~~~n~s~---q~~-~~~k~~~s~~el~e~ve~~~~~ 94 (423)
-+=|+-+++.+-++=..|.++.|-+.+|- +.|-..-..|.++++-+.- +.. ..+++.|-+..+-|--- .
T Consensus 70 ~~llq~kirk~~e~~eglr~i~es~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~----~ 145 (401)
T PF06785_consen 70 GQLLQTKIRKITEKDEGLRKIRESVEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQ----C 145 (401)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH----H
Confidence 34466666666666666666666555553 2233333344444444322 111 22222222222222222 2
Q ss_pred hhhcchhHHHHHHhhhhhhhhhhhhh
Q psy14534 95 VDYNLPTIQREISKLEFGVAQINSTL 120 (423)
Q Consensus 95 ~d~~ip~~~~EI~e~e~~l~q~ts~l 120 (423)
+.-.+.++.+|+.|.|++..+++-+|
T Consensus 146 lqlqL~~l~~e~~Ekeeesq~LnrEL 171 (401)
T PF06785_consen 146 LQLQLDALQQECGEKEEESQTLNREL 171 (401)
T ss_pred HHHhHHHHHHHHhHhHHHHHHHHHHH
Confidence 33356677888877777665544333
No 253
>PRK14127 cell division protein GpsB; Provisional
Probab=59.70 E-value=41 Score=29.43 Aligned_cols=16 Identities=19% Similarity=0.507 Sum_probs=13.9
Q ss_pred hHHHHHHHHHHHHHHh
Q psy14534 80 SMMELLESIETIENKV 95 (423)
Q Consensus 80 s~~el~e~ve~~~~~~ 95 (423)
+-.+||.-++.||.+|
T Consensus 86 tn~DiLKRls~LEk~V 101 (109)
T PRK14127 86 TNYDILKRLSNLEKHV 101 (109)
T ss_pred chHHHHHHHHHHHHHH
Confidence 4479999999999987
No 254
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=59.41 E-value=2e+02 Score=33.19 Aligned_cols=59 Identities=19% Similarity=0.348 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHhhh-cchhHHHHHHhhhhhhhh-hhhhhhhhhhhhhhhHHHHHHHHhhh
Q psy14534 83 ELLESIETIENKVDY-NLPTIQREISKLEFGVAQ-INSTLQVVNETRESDANYLKSTVSTL 141 (423)
Q Consensus 83 el~e~ve~~~~~~d~-~ip~~~~EI~e~e~~l~q-~ts~l~~~~Ee~~n~s~~i~s~~~si 141 (423)
.++.+++.++-.+|. .+|++..++..++.-++. .++..+.-+...+++...|+....++
T Consensus 298 ~i~~~~~~l~l~~~~~qLP~v~~~l~~l~~v~~~nl~~~v~~~~~~~~~ip~~v~~qt~~~ 358 (806)
T PF05478_consen 298 SILSSLDILQLDADFSQLPNVTSQLNNLEEVIKTNLSSIVQEGNSRFNDIPEKVQNQTSDV 358 (806)
T ss_pred HHHHhccccccCCCcccCCChHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 454555544444444 499999999888876543 34444555555666666665544443
No 255
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=59.15 E-value=1.5e+02 Score=27.47 Aligned_cols=77 Identities=12% Similarity=0.178 Sum_probs=33.8
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH---hhhhhhhhhHHHHHHhhccccccc-hhhhhhhhHHHHHHHHHHHHH
Q psy14534 18 FLKTKHHLEKEQHVINHKMKTLQAINEEILQ---RISHLETSSQTNVKTLFNITKQIS-GVEHLHSSMMELLESIETIEN 93 (423)
Q Consensus 18 ~~~~~~~le~~~~~~~~~~~~l~~~~~~~~~---r~~~~e~~~~~l~~~~~n~s~q~~-~~~k~~~s~~el~e~ve~~~~ 93 (423)
+..++..+......+..++..+++....+.+ .++..- -...++-..++-.++. .+..+-..+-+-++.++.+..
T Consensus 8 l~~~~~~~~~~~~~~~~~l~~l~~ai~~~~~~~~~LkGka--~dsiK~y~~~vh~pll~~~~~~~~~~~~~l~~~~~~~~ 85 (204)
T PF04740_consen 8 LHSQAESTNSSLKELKEQLESLQKAINQFISSESSLKGKA--YDSIKNYFSEVHIPLLQGLILLLEEYQEALKFIKDFQS 85 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3445555555555555566666554333222 122211 1122233333344443 333333444333355566666
Q ss_pred Hhh
Q psy14534 94 KVD 96 (423)
Q Consensus 94 ~~d 96 (423)
.||
T Consensus 86 ~vd 88 (204)
T PF04740_consen 86 EVD 88 (204)
T ss_pred HHc
Confidence 664
No 256
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=59.06 E-value=49 Score=35.78 Aligned_cols=28 Identities=14% Similarity=0.224 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q psy14534 30 HVINHKMKTLQAINEEILQRISHLETSS 57 (423)
Q Consensus 30 ~~~~~~~~~l~~~~~~~~~r~~~~e~~~ 57 (423)
..|+.++.+++....++.+++..++...
T Consensus 74 ~~l~~~l~~l~~~~~~~~~~~~~~~~~~ 101 (525)
T TIGR02231 74 AELRKQIRELEAELRDLEDRGDALKALA 101 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444433
No 257
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=58.90 E-value=56 Score=32.36 Aligned_cols=37 Identities=27% Similarity=0.401 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHH
Q psy14534 25 LEKEQHVINHKMKTLQAINEEILQRISHLETSSQTNV 61 (423)
Q Consensus 25 le~~~~~~~~~~~~l~~~~~~~~~r~~~~e~~~~~l~ 61 (423)
+.+....|..++.+||...++..+||++||.+.-+|-
T Consensus 147 ~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~Le 183 (290)
T COG4026 147 LQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLE 183 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444445556666667777777777777765553
No 258
>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals.
Probab=58.85 E-value=52 Score=33.71 Aligned_cols=67 Identities=15% Similarity=0.243 Sum_probs=41.8
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhccc-cccchhhhhhhhHHHHHHH
Q psy14534 18 FLKTKHHLEKEQHVINHKMKTLQAINEEILQRISHLETSSQTNVKTLFNIT-KQISGVEHLHSSMMELLES 87 (423)
Q Consensus 18 ~~~~~~~le~~~~~~~~~~~~l~~~~~~~~~r~~~~e~~~~~l~~~~~n~s-~q~~~~~k~~~s~~el~e~ 87 (423)
|.+-++.|.+.---|.|+..-| .|++|.=|+++..+-.+|..-|..=- -=|+.||||+..-|+||++
T Consensus 155 IEKSvKDLqRctvSL~RYr~~l---kee~d~S~k~ik~~F~~l~~cL~dREvaLl~EmdkVK~EAmeiL~a 222 (302)
T PF07139_consen 155 IEKSVKDLQRCTVSLTRYRVVL---KEEMDSSIKKIKQTFAELQSCLMDREVALLAEMDKVKAEAMEILDA 222 (302)
T ss_pred HHHHHHHHHHHHHHHHhhhhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555554433 46777777777777777766554411 1234889999999888865
No 259
>KOG4809|consensus
Probab=58.47 E-value=2.8e+02 Score=30.99 Aligned_cols=73 Identities=8% Similarity=0.068 Sum_probs=41.3
Q ss_pred HHHHhhccccccchhhhhhhhHH--------HHHHHHHHHHH-----HhhhcchhHHHHHHhhhhhhhhhhhhhhhhhhh
Q psy14534 60 NVKTLFNITKQISGVEHLHSSMM--------ELLESIETIEN-----KVDYNLPTIQREISKLEFGVAQINSTLQVVNET 126 (423)
Q Consensus 60 l~~~~~n~s~q~~~~~k~~~s~~--------el~e~ve~~~~-----~~d~~ip~~~~EI~e~e~~l~q~ts~l~~~~Ee 126 (423)
|+.++-|....+++++=+=+|-. +|-..-++.++ .|+..|.++-+|+...+.++++.-|....+=|=
T Consensus 371 Las~glk~ds~Lk~leIalEqkkEec~kme~qLkkAh~~~ddar~~pe~~d~i~~le~e~~~y~de~~kaqaevdrlLei 450 (654)
T KOG4809|consen 371 LASAGLKRDSKLKSLEIALEQKKEECSKMEAQLKKAHNIEDDARMNPEFADQIKQLEKEASYYRDECGKAQAEVDRLLEI 450 (654)
T ss_pred HHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444454455555554433322 44444444444 366777778888888888888777766554443
Q ss_pred hhhhHH
Q psy14534 127 RESDAN 132 (423)
Q Consensus 127 ~~n~s~ 132 (423)
++.+..
T Consensus 451 lkeven 456 (654)
T KOG4809|consen 451 LKEVEN 456 (654)
T ss_pred HHHHHh
Confidence 333333
No 260
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=58.26 E-value=47 Score=26.36 Aligned_cols=49 Identities=14% Similarity=0.147 Sum_probs=22.8
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhc
Q psy14534 18 FLKTKHHLEKEQHVINHKMKTLQAINEEILQRISHLETSSQTNVKTLFN 66 (423)
Q Consensus 18 ~~~~~~~le~~~~~~~~~~~~l~~~~~~~~~r~~~~e~~~~~l~~~~~n 66 (423)
+.++|..||-+.....+-+.+|-+.+-+-...|..|+...+.|...+-.
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 50 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRE 50 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556655555555555555444444444444444444444444433
No 261
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=58.26 E-value=1.8e+02 Score=31.80 Aligned_cols=10 Identities=0% Similarity=0.139 Sum_probs=6.1
Q ss_pred ceEEEEeeec
Q psy14534 411 ARSHMKIRRR 420 (423)
Q Consensus 411 k~~~M~IRp~ 420 (423)
+-.+.|+.|.
T Consensus 462 reirv~v~~~ 471 (514)
T TIGR03319 462 REIRVMVKPE 471 (514)
T ss_pred cEEEEEecCC
Confidence 3566777664
No 262
>TIGR00996 Mtu_fam_mce virulence factor Mce family protein. Members of this paralogous family are found as six tandem homologous proteins in the same orientation per cassette, in four separate cassettes in Mycobacterium tuberculosis. The six members of each cassette represent six subfamilies. One subfamily includes the protein mce (mycobacterial cell entry), a virulence protein required for invasion of non-phagocytic cells.
Probab=58.14 E-value=69 Score=31.52 Aligned_cols=82 Identities=12% Similarity=0.135 Sum_probs=49.3
Q ss_pred HHHHhhccccccchhhhhhhhHHHHHHHHHHHHHHhhhcchhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHh
Q psy14534 60 NVKTLFNITKQISGVEHLHSSMMELLESIETIENKVDYNLPTIQREISKLEFGVAQINSTLQVVNETRESDANYLKSTVS 139 (423)
Q Consensus 60 l~~~~~n~s~q~~~~~k~~~s~~el~e~ve~~~~~~d~~ip~~~~EI~e~e~~l~q~ts~l~~~~Ee~~n~s~~i~s~~~ 139 (423)
+...+.|+..=+..+..-.+.+-++++.+..+=+.+-++-+++..=+..+..-++++...+...+..+..+-..+...+.
T Consensus 190 i~~ll~~l~~l~~~l~~~~~~l~~~v~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~~~~~l~~~~~~l~~~l~~l~~~~~ 269 (291)
T TIGR00996 190 IGALIDNLNRVLDVLADRSDQLDRLLDNLATLTAQLADRDDALDDALAALSGASAQVRDLLAENRPNLPQALANLAPVLT 269 (291)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 33333333333334455555566777777776666666777777777777776776666666666666555555554444
Q ss_pred hh
Q psy14534 140 TL 141 (423)
Q Consensus 140 si 141 (423)
.+
T Consensus 270 ~l 271 (291)
T TIGR00996 270 LL 271 (291)
T ss_pred HH
Confidence 44
No 263
>PRK12704 phosphodiesterase; Provisional
Probab=58.08 E-value=42 Score=36.73 Aligned_cols=8 Identities=0% Similarity=0.152 Sum_probs=3.9
Q ss_pred eEEEEeee
Q psy14534 412 RSHMKIRR 419 (423)
Q Consensus 412 ~~~M~IRp 419 (423)
-.+.|+.|
T Consensus 469 eirv~v~~ 476 (520)
T PRK12704 469 EIRVIVKP 476 (520)
T ss_pred eEEEEeCC
Confidence 34555544
No 264
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=58.03 E-value=3.3 Score=46.52 Aligned_cols=72 Identities=18% Similarity=0.308 Sum_probs=0.0
Q ss_pred HHHHhhhhhhhhhHHHHHHhhc---cccccchhhhhhhhHHHHHHHHHHHHHHhhhcchhHHHHHHhhhhhhhhhhhhh
Q psy14534 45 EILQRISHLETSSQTNVKTLFN---ITKQISGVEHLHSSMMELLESIETIENKVDYNLPTIQREISKLEFGVAQINSTL 120 (423)
Q Consensus 45 ~~~~r~~~~e~~~~~l~~~~~n---~s~q~~~~~k~~~s~~el~e~ve~~~~~~d~~ip~~~~EI~e~e~~l~q~ts~l 120 (423)
+..+|+.++|.+..+.++.+-. ..+||..|..-. ..+++.+..+|+.. +..+.++..|...+..+...-+++
T Consensus 305 ~~a~r~~klE~~ve~YKkKLed~~~lk~qvk~Lee~N---~~l~e~~~~LEeel-~~~~~~~~qle~~k~qi~eLe~~l 379 (713)
T PF05622_consen 305 EKADRADKLENEVEKYKKKLEDLEDLKRQVKELEEDN---AVLLETKAMLEEEL-KKARALKSQLEEYKKQIQELEQKL 379 (713)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHH
Confidence 5667888899888888866555 446665544433 34445555555555 223444444444444333333333
No 265
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=57.77 E-value=3e+02 Score=30.42 Aligned_cols=22 Identities=23% Similarity=0.226 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHhhhcchhHHHH
Q psy14534 84 LLESIETIENKVDYNLPTIQRE 105 (423)
Q Consensus 84 l~e~ve~~~~~~d~~ip~~~~E 105 (423)
+..+++-|+.++..+|+.+...
T Consensus 306 e~sk~eeL~~~L~~~lea~q~a 327 (531)
T PF15450_consen 306 EESKAEELATKLQENLEAMQLA 327 (531)
T ss_pred HHhhHHHHHHHHHHHHHHHHHh
Confidence 3456666666666666666544
No 266
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=57.60 E-value=2.3e+02 Score=29.12 Aligned_cols=99 Identities=15% Similarity=0.161 Sum_probs=58.1
Q ss_pred hhhHHHHHhhHHHHHHHHHHHHHHHHHH-H---H----HHHHhhhhhhhhhHHHHHHhhccccccchhh----hhhhhHH
Q psy14534 15 GKLFLKTKHHLEKEQHVINHKMKTLQAI-N---E----EILQRISHLETSSQTNVKTLFNITKQISGVE----HLHSSMM 82 (423)
Q Consensus 15 ~~~~~~~~~~le~~~~~~~~~~~~l~~~-~---~----~~~~r~~~~e~~~~~l~~~~~n~s~q~~~~~----k~~~s~~ 82 (423)
+.||.++|--|-..+.-++.+=.+.++. . + ..++.-+.|-.--..|.+.+|.-+.|+..|- .|.+.+.
T Consensus 1 N~~Lq~eia~LrlEidtik~q~qekE~ky~ediei~Kekn~~Lqk~lKLneE~ltkTi~qy~~QLn~L~aENt~L~SkLe 80 (305)
T PF14915_consen 1 NHMLQDEIAMLRLEIDTIKNQNQEKEKKYLEDIEILKEKNDDLQKSLKLNEETLTKTIFQYNGQLNVLKAENTMLNSKLE 80 (305)
T ss_pred CchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHhHHHH
Confidence 3567777777766666665554333331 1 1 2233333333444567788999888887543 2333333
Q ss_pred HHHHHHHHHHHHhhhcchhHHHHHHhhhhhh
Q psy14534 83 ELLESIETIENKVDYNLPTIQREISKLEFGV 113 (423)
Q Consensus 83 el~e~ve~~~~~~d~~ip~~~~EI~e~e~~l 113 (423)
-=-++.+.+|..+.-..|-+...|..-+...
T Consensus 81 ~EKq~kerLEtEiES~rsRLaaAi~d~dqsq 111 (305)
T PF14915_consen 81 KEKQNKERLETEIESYRSRLAAAIQDHDQSQ 111 (305)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 3456677788888777777777777666543
No 267
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=57.60 E-value=23 Score=38.28 Aligned_cols=44 Identities=16% Similarity=0.255 Sum_probs=29.0
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHh
Q psy14534 21 TKHHLEKEQHVINHKMKTLQAINEEILQRISHLETSSQTNVKTL 64 (423)
Q Consensus 21 ~~~~le~~~~~~~~~~~~l~~~~~~~~~r~~~~e~~~~~l~~~~ 64 (423)
..++||++...++.++..+.+..+....+|+.||.+..+|..++
T Consensus 77 kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 77 TAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 45666666666665566555666667777777777777666555
No 268
>cd07599 BAR_Rvs167p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 167 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 167 (Rvs167p) and Schizosaccharomyces pombe Hob1 (homolog of Bin1). S. cerevisiae Rvs167p plays a role in regulation of the actin cytoskeleton, endocytosis, and sporulation. It forms a heterodimer with another BAR domain protein Rvs161p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. Rvs167p also interacts with the GTPase activating protein (GAP) Gyp5p, which is involved in ER to Golgi vesicle trafficking. BAR domains fo
Probab=57.51 E-value=1.7e+02 Score=27.66 Aligned_cols=52 Identities=15% Similarity=0.157 Sum_probs=36.2
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhccccccc
Q psy14534 21 TKHHLEKEQHVINHKMKTLQAINEEILQRISHLETSSQTNVKTLFNITKQIS 72 (423)
Q Consensus 21 ~~~~le~~~~~~~~~~~~l~~~~~~~~~r~~~~e~~~~~l~~~~~n~s~q~~ 72 (423)
+...+++.-..+...++.|.+..+...+=++.+-..+.+++..+..+=.++.
T Consensus 3 ~f~~~~~~f~~~e~~~~kL~k~~k~y~~a~~~l~~~~~~~~~~~~~ly~p~~ 54 (216)
T cd07599 3 QFEELEKDFKSLEKSLKKLIEQSKAFRDSWRSILTHQIAFAKEFAELYDPIV 54 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcC
Confidence 3455566666666667777777777777888888888888777666555554
No 269
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=57.29 E-value=30 Score=27.66 Aligned_cols=43 Identities=16% Similarity=0.264 Sum_probs=29.5
Q ss_pred cchhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q psy14534 13 RNGKLFLKTKHHLEKEQHVINHKMKTLQAINEEILQRISHLET 55 (423)
Q Consensus 13 r~~~~~~~~~~~le~~~~~~~~~~~~l~~~~~~~~~r~~~~e~ 55 (423)
+.|+.+++++..+......|..++..-....|-+-.|++++|.
T Consensus 21 ~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~leq 63 (65)
T TIGR02449 21 SENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKALEQ 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 4566677777777777777766666665566777777777764
No 270
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=57.28 E-value=2e+02 Score=28.77 Aligned_cols=10 Identities=10% Similarity=0.272 Sum_probs=3.8
Q ss_pred HHHHHhhhhh
Q psy14534 103 QREISKLEFG 112 (423)
Q Consensus 103 ~~EI~e~e~~ 112 (423)
|+.|+..+.+
T Consensus 87 R~~L~~~~~~ 96 (291)
T PF10475_consen 87 RRNLKSADEN 96 (291)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 271
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=57.14 E-value=75 Score=31.01 Aligned_cols=26 Identities=31% Similarity=0.434 Sum_probs=10.3
Q ss_pred HHHHHHHHHhhhcchhHHHHHHhhhh
Q psy14534 86 ESIETIENKVDYNLPTIQREISKLEF 111 (423)
Q Consensus 86 e~ve~~~~~~d~~ip~~~~EI~e~e~ 111 (423)
++++.++..-....|-+..=|..++.
T Consensus 91 ~qi~~~~~~~~~l~p~m~~m~~~L~~ 116 (251)
T PF11932_consen 91 QQIEQIEETRQELVPLMEQMIDELEQ 116 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333334444444444444
No 272
>PRK10698 phage shock protein PspA; Provisional
Probab=57.07 E-value=1.8e+02 Score=28.24 Aligned_cols=45 Identities=13% Similarity=0.192 Sum_probs=24.2
Q ss_pred hhhhHHHHHHHHHHHHHHhhhcchhHHHHHHhhhhhhhhhhhhhh
Q psy14534 77 LHSSMMELLESIETIENKVDYNLPTIQREISKLEFGVAQINSTLQ 121 (423)
Q Consensus 77 ~~~s~~el~e~ve~~~~~~d~~ip~~~~EI~e~e~~l~q~ts~l~ 121 (423)
+.+.+.++++.+|-=+.-++..+-+++.++.+....+++..+.-+
T Consensus 11 i~a~in~~ldkaEDP~k~l~q~i~em~~~l~~~r~alA~~~A~~k 55 (222)
T PRK10698 11 VNANINALLEKAEDPQKLVRLMIQEMEDTLVEVRSTSARALAEKK 55 (222)
T ss_pred HHhHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666654444555555555555555555554444443
No 273
>KOG0971|consensus
Probab=57.01 E-value=2.3e+02 Score=33.47 Aligned_cols=13 Identities=15% Similarity=0.406 Sum_probs=5.3
Q ss_pred HHHHHHhhhhhhh
Q psy14534 43 NEEILQRISHLET 55 (423)
Q Consensus 43 ~~~~~~r~~~~e~ 55 (423)
-|++..+++..|-
T Consensus 419 kE~Lsr~~d~aEs 431 (1243)
T KOG0971|consen 419 KERLSRELDQAES 431 (1243)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444443
No 274
>PF13166 AAA_13: AAA domain
Probab=56.69 E-value=3.2e+02 Score=30.41 Aligned_cols=16 Identities=13% Similarity=0.123 Sum_probs=6.4
Q ss_pred hhHHHHHHhhhhhhhh
Q psy14534 100 PTIQREISKLEFGVAQ 115 (423)
Q Consensus 100 p~~~~EI~e~e~~l~q 115 (423)
-+...+|...+.+..+
T Consensus 380 ~~~n~~~~~~~~~~~~ 395 (712)
T PF13166_consen 380 EEHNEKIDNLKKEQNE 395 (712)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333344444443333
No 275
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=55.92 E-value=96 Score=27.61 Aligned_cols=29 Identities=14% Similarity=0.221 Sum_probs=14.3
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14534 22 KHHLEKEQHVINHKMKTLQAINEEILQRI 50 (423)
Q Consensus 22 ~~~le~~~~~~~~~~~~l~~~~~~~~~r~ 50 (423)
|.+|..++..|.++...|++..+.+..++
T Consensus 3 i~~Lk~~~~~L~~~~~~le~~i~~~~~~~ 31 (171)
T PF03357_consen 3 ILKLKKTIRRLEKQIKRLEKKIKKLEKKA 31 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555544444444444
No 276
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=55.89 E-value=2e+02 Score=27.87 Aligned_cols=7 Identities=29% Similarity=0.045 Sum_probs=3.4
Q ss_pred CceEEEE
Q psy14534 239 SGLQLIS 245 (423)
Q Consensus 239 sGvY~I~ 245 (423)
++.|+|.
T Consensus 173 ~~~~~I~ 179 (302)
T PF10186_consen 173 SSEYTIC 179 (302)
T ss_pred CCCeeec
Confidence 4455553
No 277
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=55.54 E-value=2.1e+02 Score=27.89 Aligned_cols=14 Identities=14% Similarity=0.223 Sum_probs=5.3
Q ss_pred hhhhhhhhhHHHHH
Q psy14534 49 RISHLETSSQTNVK 62 (423)
Q Consensus 49 r~~~~e~~~~~l~~ 62 (423)
+|+.|......|..
T Consensus 93 ~l~~L~~ri~~L~~ 106 (247)
T PF06705_consen 93 RLDSLNDRIEALEE 106 (247)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 278
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=55.51 E-value=29 Score=27.62 Aligned_cols=31 Identities=32% Similarity=0.365 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHhhhcchhHHHHHHhhhhhhhhh
Q psy14534 82 MELLESIETIENKVDYNLPTIQREISKLEFGVAQI 116 (423)
Q Consensus 82 ~el~e~ve~~~~~~d~~ip~~~~EI~e~e~~l~q~ 116 (423)
.++.+.+..++.+.|. ....|..+|...+..
T Consensus 2 ~~i~e~l~~ie~~l~~----~~~~i~~lE~~~~~~ 32 (71)
T PF10779_consen 2 QDIKEKLNRIETKLDN----HEERIDKLEKRDAAN 32 (71)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 4566666666666644 444444444443333
No 279
>PRK09546 zntB zinc transporter; Reviewed
Probab=55.39 E-value=1.8e+02 Score=29.37 Aligned_cols=19 Identities=26% Similarity=0.347 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHhhhhhhhh
Q psy14534 38 TLQAINEEILQRISHLETS 56 (423)
Q Consensus 38 ~l~~~~~~~~~r~~~~e~~ 56 (423)
.+-...+++++++..+|..
T Consensus 154 ~~~~~l~~i~~~ld~lE~~ 172 (324)
T PRK09546 154 HASEFIEELHDKIIDLEDN 172 (324)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333445556666555543
No 280
>PRK12704 phosphodiesterase; Provisional
Probab=55.03 E-value=2.3e+02 Score=31.14 Aligned_cols=60 Identities=22% Similarity=0.206 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHhhhcchhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhhHHH
Q psy14534 84 LLESIETIENKVDYNLPTIQREISKLEFGVAQINSTLQVVNETRESDANYLKSTVSTLATL 144 (423)
Q Consensus 84 l~e~ve~~~~~~d~~ip~~~~EI~e~e~~l~q~ts~l~~~~Ee~~n~s~~i~s~~~sis~l 144 (423)
|.+..+.|+.+- ..|-....+|...+.+|.+.-..|....+++..+..+.....+.++.|
T Consensus 91 L~~Ree~Le~r~-e~Lekke~eL~~re~~Le~re~eLe~~~~~~~~~~~~~~~~l~~~a~l 150 (520)
T PRK12704 91 LLQKEENLDRKL-ELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISGL 150 (520)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 444444455444 345555666666666666666666666666666666666666655444
No 281
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=55.00 E-value=2.1e+02 Score=27.83 Aligned_cols=39 Identities=13% Similarity=0.153 Sum_probs=18.1
Q ss_pred HHHHHhhHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhhhh
Q psy14534 18 FLKTKHHLEKEQHVINHKMKTL-QAINEEILQRISHLETS 56 (423)
Q Consensus 18 ~~~~~~~le~~~~~~~~~~~~l-~~~~~~~~~r~~~~e~~ 56 (423)
+.+++..++..++.-.++.... +..+..+.+.|.+||..
T Consensus 10 i~e~~~~f~~~le~e~~~Rr~~ee~r~~~i~e~i~~Le~~ 49 (247)
T PF06705_consen 10 INERFSGFESDLENEKRQRREQEEQRFQDIKEQIQKLEKA 49 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 4455555655554433332222 22344455555555544
No 282
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=54.90 E-value=66 Score=28.97 Aligned_cols=33 Identities=15% Similarity=0.379 Sum_probs=23.1
Q ss_pred HHHHHHhhhcchhHHHHHHhhhhhhhhhhhhhh
Q psy14534 89 ETIENKVDYNLPTIQREISKLEFGVAQINSTLQ 121 (423)
Q Consensus 89 e~~~~~~d~~ip~~~~EI~e~e~~l~q~ts~l~ 121 (423)
+.+...+...+..+-.|+..++++.++.-++.+
T Consensus 19 ~~l~~~l~~~i~~~d~el~QLefq~kr~~~e~~ 51 (131)
T PF11068_consen 19 EELLQELQEQIQQLDQELQQLEFQGKRMIKEIK 51 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555556667777788888888887777654
No 283
>KOG4552|consensus
Probab=54.89 E-value=28 Score=33.99 Aligned_cols=35 Identities=29% Similarity=0.289 Sum_probs=21.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhH
Q psy14534 24 HLEKEQHVINHKMKTLQAINEEILQRISHLETSSQ 58 (423)
Q Consensus 24 ~le~~~~~~~~~~~~l~~~~~~~~~r~~~~e~~~~ 58 (423)
.|.-.|-...+.|..|++++|.+|+-|..|+..++
T Consensus 64 kla~eq~k~e~~m~~Lea~VEkrD~~IQqLqk~LK 98 (272)
T KOG4552|consen 64 KLAPEQQKREQLMRTLEAHVEKRDEVIQQLQKNLK 98 (272)
T ss_pred HHhHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 34444555566677777777777776666655443
No 284
>PF12308 Noelin-1: Neurogenesis glycoprotein; InterPro: IPR022082 This domain family is found in eukaryotes, and is approximately 100 amino acids in length. The family is found in association with PF02191 from PFAM. There are two conserved sequence motifs: SAQ and VQN. Noelin-1 is a glycoprotein which is secreted mainly by postmitotic neurogenic tissues in the developing central and peripheral nervous systems, first appearing after neural tube closure. It is likely that it forms large multimeric complexes.It has a divergent function in neurogenesis. In animal caps neuralized by expression of noggin, co-expression of Noelin-1 causes expression of neuronal differentiation markers several stages before neurogenesis normally occurs in this tissue. Finally, only secreted forms of the protein can activate sensory marker expression, while all forms of the protein can induce early neurogenesis.
Probab=54.85 E-value=43 Score=28.93 Aligned_cols=59 Identities=12% Similarity=0.251 Sum_probs=45.1
Q ss_pred CCCCcccchhhHHHHHhhHHHHHHHHHHH----HHHHH---HHHHHHHHhhhhhhhhhHHHHHHhh
Q psy14534 7 LPDPRYRNGKLFLKTKHHLEKEQHVINHK----MKTLQ---AINEEILQRISHLETSSQTNVKTLF 65 (423)
Q Consensus 7 ~~~~~~r~~~~~~~~~~~le~~~~~~~~~----~~~l~---~~~~~~~~r~~~~e~~~~~l~~~~~ 65 (423)
-+|.|+|--|-|.+++.++-.++++|+.. ++-++ ..|+.++.+++.+|...+.|....|
T Consensus 34 SrD~r~~qlrqllekVqNmSqsievL~~RT~rdlqyv~~~E~~mk~l~~k~~~~e~~~~~l~~k~f 99 (101)
T PF12308_consen 34 SRDARSRQLRQLLEKVQNMSQSIEVLDLRTQRDLQYVRKMETQMKGLESKFRQVEDDRKSLSAKSF 99 (101)
T ss_pred ccCccHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHhcCHHHhhhhhh
Confidence 36889999999999999999999999876 33333 3567788888888887776665443
No 285
>PF00509 Hemagglutinin: Haemagglutinin; InterPro: IPR001364 Haemagglutinin (HA) is one of two main surface fusion glycoproteins embedded in the envelope of influenza viruses, the other being neuraminidase (NA). There are sixteen known HA subtypes (H1-H16) and nine NA subtypes (N1-N9), which together are used to classify influenza viruses (e.g. H5N1). The antigenic variations in HA and NA enable the virus to evade host antibodies made to previous influenza strains, accounting for recurrent influenza epidemics []. The HA glycoprotein is present in the viral membrane as a single polypeptide (HA0), which must be cleaved by the host's trypsin-like proteases to produce two peptides (HA1 and HA2) in order for the virus to be infectious. Once HA0 is cleaved, the newly exposed N-terminal of the HA2 peptide then acts to fuse the viral envelope to the cellular membrane of the host cell, which allows the viral negative-stranded RNA to infect the host cell. The type of host protease can influence the infectivity and pathogenicity of the virus. The haemagglutinin glycoprotein is a trimer containing three structurally distinct regions: a globular head consisting of anti-parallel beta-sheets that form a beta-sandwich with a jelly-roll fold (contains the receptor binding site and the HA1/HA2 cleavage site); a triple-stranded, coiled-coil, alpha-helical stalk; and a globular foot composed of anti-parallel beta-sheets [, ]. Each monomer consists of an intact HA0 polypeptide with the HA1 and HA2 regions linked by disulphide bonds. The N terminus of HA1 provides the central strand in the 5-stranded globular foot, while the rest of the HA1 chain makes its way to the 8-stranded globular head. HA2 provides two alpha helices, which form part of the triple-stranded coiled-coil that stabilises the trimer, its C terminus providing the remaining strands of the 5-stranded globular foot. This entry represents the entire haemagglutinin protein (HA0) consisting of both the HA1 and HA2 regions, as found in influenza A and B viruses.; GO: 0046789 host cell surface receptor binding, 0019064 viral envelope fusion with host membrane, 0019031 viral envelope; PDB: 2WR5_A 2IBX_A 2WR0_B 2WR1_C 2XN9_F 2WRF_I 3S11_E 3BT6_A 3SM5_E 2FK0_H ....
Probab=54.80 E-value=48 Score=36.51 Aligned_cols=86 Identities=15% Similarity=0.234 Sum_probs=53.8
Q ss_pred HHHHHHHhhhcchhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHH
Q psy14534 88 IETIENKVDYNLPTIQREISKLEFGVAQINSTLQVVNETRESDANYLKSTVSTLATLQEKVEANNIIMQALSDANYLKST 167 (423)
Q Consensus 88 ve~~~~~~d~~ip~~~~EI~e~e~~l~q~ts~l~~~~Ee~~n~s~~i~s~~~sis~lqek~~~~~kv~~le~Q~~~I~~l 167 (423)
.++.+.++|+.-..+.+.|.+.-..+.++..+...+-..+.++.+.+..+..++-.-|.+. --+.+....|+..
T Consensus 366 ~kSTQ~aid~it~kvN~iiek~n~~fe~i~~ef~~ve~Ri~~l~~~v~d~~~d~wsynaEL------lVlleN~~tld~~ 439 (550)
T PF00509_consen 366 LKSTQKAIDQITKKVNSIIEKMNKQFEQIDKEFNEVEKRIDNLEKKVDDKIADVWSYNAEL------LVLLENQRTLDLH 439 (550)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTCEEEECSCSSSTTGHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHhhhccchhhhcccHHH------HHHhccccchhhh
Confidence 4555666666666666666666666667777777666777777777777766663333322 2245556667766
Q ss_pred HHHHHHHHHHHH
Q psy14534 168 VSTLATLQEKVE 179 (423)
Q Consensus 168 ~~~v~~~~~ql~ 179 (423)
.+.|..|+.++.
T Consensus 440 Ds~~~~L~ekvk 451 (550)
T PF00509_consen 440 DSNVNNLYEKVK 451 (550)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666666553
No 286
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=54.80 E-value=2.2e+02 Score=34.18 Aligned_cols=29 Identities=14% Similarity=0.334 Sum_probs=21.0
Q ss_pred hhhhhHHHHHHHHHHHHHHhhhcchhHHHHH
Q psy14534 76 HLHSSMMELLESIETIENKVDYNLPTIQREI 106 (423)
Q Consensus 76 k~~~s~~el~e~ve~~~~~~d~~ip~~~~EI 106 (423)
.|.+++..+-++++.|++++ ..|.++.+-
T Consensus 1067 eLReQIq~~KQ~LesLQRAV--~TPVvtd~e 1095 (1439)
T PF12252_consen 1067 ELREQIQSVKQDLESLQRAV--VTPVVTDAE 1095 (1439)
T ss_pred HHHHHHHHHHHHHHHHHHhh--cccccccHH
Confidence 46788888888888888777 666665443
No 287
>PRK10807 paraquat-inducible protein B; Provisional
Probab=54.77 E-value=78 Score=34.86 Aligned_cols=106 Identities=16% Similarity=0.282 Sum_probs=49.2
Q ss_pred chhhhhhhhHHHHHHHHHHHHHHhhhcchhHHHHHHhhhhhhhhhhhhhhhhh-----hhhhhhHHHHHHHHhhhHHH--
Q psy14534 72 SGVEHLHSSMMELLESIETIENKVDYNLPTIQREISKLEFGVAQINSTLQVVN-----ETRESDANYLKSTVSTLATL-- 144 (423)
Q Consensus 72 ~~~~k~~~s~~el~e~ve~~~~~~d~~ip~~~~EI~e~e~~l~q~ts~l~~~~-----Ee~~n~s~~i~s~~~sis~l-- 144 (423)
+.++++-.++.+++++++.+- +|..+.++..-++..+..+++....+..++ ++...+..+++....++.+.
T Consensus 413 s~l~~l~~~~~~il~kin~lp--le~i~~~l~~tL~~~~~tl~~l~~~l~~l~~ll~~~~~~~Lp~~L~~TL~~l~~~l~ 490 (547)
T PRK10807 413 GGLAQIQQKLMEALDKINNLP--LNPMIEQATSTLSESQRTMRELQTTLDSLNKITSSQSMQQLPADMQKTLRELNRSMQ 490 (547)
T ss_pred CCHHHHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 355666666666666666654 444455555555555555555544443322 22222223333322222111
Q ss_pred --HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhH
Q psy14534 145 --QEKVEANNIIMQALSDANYLKSTVSTLATLQEKVEANN 182 (423)
Q Consensus 145 --qek~~~~~kv~~le~Q~~~I~~l~~~v~~~~~ql~~q~ 182 (423)
++-+.+++. +.+-+..|.++++.++.+-+.|+.|.
T Consensus 491 ~~~~~s~~~~~---l~~tl~~l~~~~r~lr~l~~~L~~~P 527 (547)
T PRK10807 491 GFQPGSPAYNK---MVADMQRLDQVLRELQPVLKTLNEKS 527 (547)
T ss_pred hcCCCChHHHH---HHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 112222222 22334556666666666666666553
No 288
>PF15003 HAUS2: HAUS augmin-like complex subunit 2
Probab=54.74 E-value=2e+02 Score=29.29 Aligned_cols=27 Identities=33% Similarity=0.464 Sum_probs=16.2
Q ss_pred hhhhhHHHHHHHHHHHHHHhhhcchhH
Q psy14534 76 HLHSSMMELLESIETIENKVDYNLPTI 102 (423)
Q Consensus 76 k~~~s~~el~e~ve~~~~~~d~~ip~~ 102 (423)
..|..+.+||..+-.|-+++..++..|
T Consensus 130 ~yHr~vVeLL~laa~fi~~Le~~LetI 156 (277)
T PF15003_consen 130 QYHRYVVELLELAASFIEKLEEHLETI 156 (277)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357778888876555555554444433
No 289
>PRK11281 hypothetical protein; Provisional
Probab=54.64 E-value=3e+02 Score=33.28 Aligned_cols=7 Identities=14% Similarity=0.036 Sum_probs=4.1
Q ss_pred CCccccc
Q psy14534 376 EGGWWFS 382 (423)
Q Consensus 376 ~GGWWy~ 382 (423)
-.|||+.
T Consensus 562 ~~g~~~~ 568 (1113)
T PRK11281 562 AVGLILL 568 (1113)
T ss_pred HHHHHHH
Confidence 4667754
No 290
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=54.57 E-value=1.6e+02 Score=26.44 Aligned_cols=68 Identities=16% Similarity=0.140 Sum_probs=33.1
Q ss_pred HhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhhHH-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q psy14534 107 SKLEFGVAQINSTLQVVNETRESDANYLKSTVSTLAT-LQEKVEANNIIMQALSDANYLKSTVSTLATLQEK 177 (423)
Q Consensus 107 ~e~e~~l~q~ts~l~~~~Ee~~n~s~~i~s~~~sis~-lqek~~~~~kv~~le~Q~~~I~~l~~~v~~~~~q 177 (423)
++....+++.+..+..-+..+ ...|+.+...++. ++.-.+-+++..+.-+++..|+++..++...+.-
T Consensus 34 ~R~Q~HL~~cA~~Va~~Q~~L---~~riKevd~~~~~l~~~~~erqk~~~k~ae~L~kv~els~~L~~~~~l 102 (131)
T PF10158_consen 34 SRYQEHLNQCAEAVAFDQNAL---AKRIKEVDQEIAKLLQQMVERQKRFAKFAEQLEKVNELSQQLSRCQSL 102 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666665554433333 3333333333322 3333333444445555666666666666555543
No 291
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=54.49 E-value=1.3e+02 Score=25.26 Aligned_cols=41 Identities=12% Similarity=0.072 Sum_probs=31.9
Q ss_pred chhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHh
Q psy14534 99 LPTIQREISKLEFGVAQINSTLQVVNETRESDANYLKSTVS 139 (423)
Q Consensus 99 ip~~~~EI~e~e~~l~q~ts~l~~~~Ee~~n~s~~i~s~~~ 139 (423)
.+..=.+|.++....++...++..++.+.+.++++|.....
T Consensus 24 ~~~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~ 64 (108)
T PF02403_consen 24 DEEDVDEIIELDQERRELQQELEELRAERNELSKEIGKLKK 64 (108)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred CHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhh
Confidence 56667788888888888888888888888888887776654
No 292
>PRK00106 hypothetical protein; Provisional
Probab=54.40 E-value=60 Score=35.80 Aligned_cols=9 Identities=0% Similarity=0.165 Sum_probs=5.4
Q ss_pred eEEEEeeec
Q psy14534 412 RSHMKIRRR 420 (423)
Q Consensus 412 ~~~M~IRp~ 420 (423)
-.+.|+.|.
T Consensus 484 EiRviV~p~ 492 (535)
T PRK00106 484 EIRIMVQPE 492 (535)
T ss_pred eEEEEecCC
Confidence 556666664
No 293
>KOG1962|consensus
Probab=54.35 E-value=80 Score=30.89 Aligned_cols=24 Identities=17% Similarity=0.267 Sum_probs=9.3
Q ss_pred HHHHhhhhhhhhhhhhhhhhhhhh
Q psy14534 104 REISKLEFGVAQINSTLQVVNETR 127 (423)
Q Consensus 104 ~EI~e~e~~l~q~ts~l~~~~Ee~ 127 (423)
.+..+++.+++++..+|.-.+++.
T Consensus 158 ~~~~kL~~el~~~~~~Le~~~~~~ 181 (216)
T KOG1962|consen 158 ADLEKLETELEKKQKKLEKAQKKV 181 (216)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444443333333
No 294
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=54.19 E-value=62 Score=30.19 Aligned_cols=32 Identities=16% Similarity=0.278 Sum_probs=18.4
Q ss_pred hHHHHHHhhhhhhhhhhhhhhhhhhhhhhhHH
Q psy14534 101 TIQREISKLEFGVAQINSTLQVVNETRESDAN 132 (423)
Q Consensus 101 ~~~~EI~e~e~~l~q~ts~l~~~~Ee~~n~s~ 132 (423)
....||++++.++++...+..++++..+++.+
T Consensus 158 ~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ 189 (192)
T PF05529_consen 158 KLSEEIEKLKKELEKKEKEIEALKKQSEGLQK 189 (192)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556666666666655555555555555544
No 295
>PF10368 YkyA: Putative cell-wall binding lipoprotein; InterPro: IPR019454 The YkyA family of proteins contain a lipoprotein signal and a hydrolase domain. They are similar to cell wall binding proteins and might also be recognisable by a host immune defence system. It is thus likely that they function in pathways important for pathogenicity []. ; PDB: 2AP3_A.
Probab=53.83 E-value=2.1e+02 Score=27.47 Aligned_cols=14 Identities=21% Similarity=0.354 Sum_probs=5.4
Q ss_pred HhhhhhhhhhHHHH
Q psy14534 48 QRISHLETSSQTNV 61 (423)
Q Consensus 48 ~r~~~~e~~~~~l~ 61 (423)
+.|..||.....|-
T Consensus 39 k~L~~lE~~~q~lY 52 (204)
T PF10368_consen 39 KKLNELEKKEQELY 52 (204)
T ss_dssp HHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444433333
No 296
>KOG1924|consensus
Probab=53.44 E-value=1.2e+02 Score=35.16 Aligned_cols=66 Identities=23% Similarity=0.301 Sum_probs=43.5
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHH-----Hhh---------ccccccchhhhhhhhHHHHHH
Q psy14534 21 TKHHLEKEQHVINHKMKTLQAINEEILQRISHLETSSQTNVK-----TLF---------NITKQISGVEHLHSSMMELLE 86 (423)
Q Consensus 21 ~~~~le~~~~~~~~~~~~l~~~~~~~~~r~~~~e~~~~~l~~-----~~~---------n~s~q~~~~~k~~~s~~el~e 86 (423)
.++++++..++- +..++|.+.-+..-|++||...+...- -.| .+-.|.+.+-..|+.|.-|++
T Consensus 884 dl~hv~kaSrvn---ad~ikK~~~~m~~~ik~Le~dlk~~~~~~~e~dkF~ekM~~F~e~a~eq~~~ls~M~~~M~~lye 960 (1102)
T KOG1924|consen 884 DLEHVEKASRVN---ADEIKKNLQQMENQIKKLERDLKNFKIAGNEHDKFVEKMTSFHEKAREQYSKLSSMHGNMEKLYE 960 (1102)
T ss_pred hHHHHHhhcccc---HHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777777662 456667777777777777777554321 111 133677778888888888888
Q ss_pred HHH
Q psy14534 87 SIE 89 (423)
Q Consensus 87 ~ve 89 (423)
++-
T Consensus 961 ~L~ 963 (1102)
T KOG1924|consen 961 SLG 963 (1102)
T ss_pred HHH
Confidence 775
No 297
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=53.40 E-value=45 Score=34.81 Aligned_cols=8 Identities=13% Similarity=0.003 Sum_probs=4.2
Q ss_pred HHHHHHhc
Q psy14534 183 IIMQALRN 190 (423)
Q Consensus 183 ~l~~kl~~ 190 (423)
.|+++.++
T Consensus 183 DlEnrsRR 190 (370)
T PF02994_consen 183 DLENRSRR 190 (370)
T ss_dssp HHHHHHTT
T ss_pred HHHhhccC
Confidence 55555544
No 298
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=53.27 E-value=2.6e+02 Score=30.66 Aligned_cols=60 Identities=20% Similarity=0.235 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHhhhcchhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhhHHH
Q psy14534 84 LLESIETIENKVDYNLPTIQREISKLEFGVAQINSTLQVVNETRESDANYLKSTVSTLATL 144 (423)
Q Consensus 84 l~e~ve~~~~~~d~~ip~~~~EI~e~e~~l~q~ts~l~~~~Ee~~n~s~~i~s~~~sis~l 144 (423)
|.+..+.|+.+- ..+.....++...+.+|.+.-..+....+++..+..+...+.+.++.|
T Consensus 85 L~qRee~Lekr~-e~Lekre~~Le~ke~~L~~re~eLee~~~e~~~~~~~~~~~le~~a~l 144 (514)
T TIGR03319 85 LLQREETLDRKM-ESLDKKEENLEKKEKELSNKEKNLDEKEEELEELIAEQREELERISGL 144 (514)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 333334444333 344445555566666666666666666556555555555555554433
No 299
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=53.25 E-value=1.1e+02 Score=34.18 Aligned_cols=47 Identities=19% Similarity=0.222 Sum_probs=20.9
Q ss_pred HHHHHHhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhhHHHHHHH
Q psy14534 102 IQREISKLEFGVAQINSTLQVVNETRESDANYLKSTVSTLATLQEKV 148 (423)
Q Consensus 102 ~~~EI~e~e~~l~q~ts~l~~~~Ee~~n~s~~i~s~~~sis~lqek~ 148 (423)
..++|++++..+.+...+.+.+.-++..++.+|...-..++.+..+.
T Consensus 420 ~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~ 466 (652)
T COG2433 420 YEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREV 466 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555544444444444444444444443333333333333
No 300
>KOG3229|consensus
Probab=53.22 E-value=2.3e+02 Score=27.77 Aligned_cols=83 Identities=17% Similarity=0.177 Sum_probs=50.8
Q ss_pred HHhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy14534 106 ISKLEFGVAQINSTLQVVNETRESDANYLKSTVSTLATLQEKVEANNIIMQALSDANYLKSTVSTLATLQEKVEANNIIM 185 (423)
Q Consensus 106 I~e~e~~l~q~ts~l~~~~Ee~~n~s~~i~s~~~sis~lqek~~~~~kv~~le~Q~~~I~~l~~~v~~~~~ql~~q~~l~ 185 (423)
++|+=...+++.+.|-..+-.+..++..++.-+..+ ++..-.+....|.+.-+++-++=++..|..++.+++++.-+++
T Consensus 63 LAKEiv~srk~v~Rly~sKAqlnSv~M~l~eqla~~-r~~G~lqkStevMk~v~sLvk~Pel~~TMrelSkEmmKaGIIE 141 (227)
T KOG3229|consen 63 LAKEIVQSRKAVKRLYESKAQLNSVSMQLKEQLATL-RVAGSLQKSTEVMKAVNSLVKLPELAATMRELSKEMMKAGIIE 141 (227)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHhhHHHHHHHHHHHH-HHHhhHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444555555555555566666555444333 2334444445556666777778888888999999998887777
Q ss_pred HHHh
Q psy14534 186 QALR 189 (423)
Q Consensus 186 ~kl~ 189 (423)
+=+.
T Consensus 142 Emvd 145 (227)
T KOG3229|consen 142 EMVD 145 (227)
T ss_pred HHHH
Confidence 6544
No 301
>KOG3091|consensus
Probab=53.19 E-value=3.4e+02 Score=29.83 Aligned_cols=19 Identities=11% Similarity=0.275 Sum_probs=12.0
Q ss_pred hhhhHHHHHHHHHHHHHHh
Q psy14534 77 LHSSMMELLESIETIENKV 95 (423)
Q Consensus 77 ~~~s~~el~e~ve~~~~~~ 95 (423)
|-.-||+|+=.+|.+..+=
T Consensus 388 Ls~RiLRv~ikqeilr~~G 406 (508)
T KOG3091|consen 388 LSHRILRVMIKQEILRKRG 406 (508)
T ss_pred HHHHHHHHHHHHHHHhccC
Confidence 3445677777777776554
No 302
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=52.93 E-value=2.2e+02 Score=27.50 Aligned_cols=38 Identities=11% Similarity=0.130 Sum_probs=18.1
Q ss_pred chhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhHHHHHH
Q psy14534 99 LPTIQREISKLEFGVAQINSTLQVVNETRESDANYLKS 136 (423)
Q Consensus 99 ip~~~~EI~e~e~~l~q~ts~l~~~~Ee~~n~s~~i~s 136 (423)
+.++...+....-...+.-..+..++..+.++...+++
T Consensus 101 l~~~~~~l~~~~~~p~~aq~~l~~~~~~l~ei~~~L~~ 138 (240)
T PF12795_consen 101 LQQENSQLIEIQTRPERAQQQLSEARQRLQEIRNQLQN 138 (240)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444444444444444444444444444444444443
No 303
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=52.85 E-value=1.8e+02 Score=26.45 Aligned_cols=154 Identities=12% Similarity=0.115 Sum_probs=0.0
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH------------------------hhhhhhhhhHHHHHHhhccccccc-
Q psy14534 18 FLKTKHHLEKEQHVINHKMKTLQAINEEILQ------------------------RISHLETSSQTNVKTLFNITKQIS- 72 (423)
Q Consensus 18 ~~~~~~~le~~~~~~~~~~~~l~~~~~~~~~------------------------r~~~~e~~~~~l~~~~~n~s~q~~- 72 (423)
+.+.+.++...+..|......+.....-+.+ -..-+-.+-++|+......+.+|.
T Consensus 21 ~~~~~~~~~~~~~~l~~~~~~i~~~~~~i~~ia~qt~lLalNAsIEAaraGe~G~gF~vvA~eir~LA~~t~~~~~~I~~ 100 (213)
T PF00015_consen 21 IQESIEEIAESIEELSESSEDISEILSLINEIAEQTNLLALNASIEAARAGEAGRGFAVVADEIRKLAEQTSESAKEISE 100 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhhccccchhcccchhHHHHHHHHHHhhhhhhhHHHHHHH
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHhhhcchhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhhHHHHHHHHHHH
Q psy14534 73 GVEHLHSSMMELLESIETIENKVDYNLPTIQREISKLEFGVAQINSTLQVVNETRESDANYLKSTVSTLATLQEKVEANN 152 (423)
Q Consensus 73 ~~~k~~~s~~el~e~ve~~~~~~d~~ip~~~~EI~e~e~~l~q~ts~l~~~~Ee~~n~s~~i~s~~~sis~lqek~~~~~ 152 (423)
.++.++..+..+...++..-..++... +.-.++.+.=.++...+..+...-+++.....++...+..| .+.-.++..
T Consensus 101 ~i~~i~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~l~~i~~~~~~i~~~i~~i~~~~~~~~~~~~~i--~~~i~~i~~ 177 (213)
T PF00015_consen 101 IIEEIQEQISQVVESMEESREQIEEGS-ESVEETSESLEEIAESVEEISDSIEEISESAEEQSESIEQI--NESIEEISE 177 (213)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred HHhhhhhhhhhhhhhhhcchhhhhhhc-ccchhcchhhhhhhhhhhHHhhhhHHHHhhHHHHHHHHHHH--HHHHHHHHH
Q ss_pred HHHHHHhhHHHHHHHHHHHHHH
Q psy14534 153 IIMQALSDANYLKSTVSTLATL 174 (423)
Q Consensus 153 kv~~le~Q~~~I~~l~~~v~~~ 174 (423)
....+......+......+...
T Consensus 178 ~~~~~~~~~~~~~~~~~~l~~~ 199 (213)
T PF00015_consen 178 ISEQISASSEEIAEAAEELSES 199 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
No 304
>KOG0946|consensus
Probab=52.32 E-value=2.1e+02 Score=33.41 Aligned_cols=28 Identities=14% Similarity=0.260 Sum_probs=13.8
Q ss_pred hhhhhhhhhhHHHHHHHHhhhHHHHHHH
Q psy14534 121 QVVNETRESDANYLKSTVSTLATLQEKV 148 (423)
Q Consensus 121 ~~~~Ee~~n~s~~i~s~~~sis~lqek~ 148 (423)
++++++++.....|+...|.++.|..+.
T Consensus 858 s~l~~~~k~~~nli~~ltEk~~sl~~qa 885 (970)
T KOG0946|consen 858 SNLQEKIKFGNNLIKELTEKISSLEAQA 885 (970)
T ss_pred HHHHHHhhhhhhHHHHHhhhhhhHHHhh
Confidence 4455555555555555555544444333
No 305
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=52.27 E-value=1.8e+02 Score=33.49 Aligned_cols=20 Identities=10% Similarity=0.074 Sum_probs=11.0
Q ss_pred hhhhhhhhhhHHHHHHHHhh
Q psy14534 121 QVVNETRESDANYLKSTVST 140 (423)
Q Consensus 121 ~~~~Ee~~n~s~~i~s~~~s 140 (423)
..++|+|..+.++|...++.
T Consensus 600 ~~lkeki~~~~~Ei~~eie~ 619 (762)
T PLN03229 600 DDLKEKVEKMKKEIELELAG 619 (762)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34555666666655555444
No 306
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=52.09 E-value=25 Score=27.26 Aligned_cols=36 Identities=19% Similarity=0.315 Sum_probs=18.4
Q ss_pred HHhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhh
Q psy14534 106 ISKLEFGVAQINSTLQVVNETRESDANYLKSTVSTL 141 (423)
Q Consensus 106 I~e~e~~l~q~ts~l~~~~Ee~~n~s~~i~s~~~si 141 (423)
|.++|-++.++.+.+..++.|...++.+|..+-+++
T Consensus 2 i~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~env 37 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKENEEISESVEKIEENV 37 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555454444444444
No 307
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=51.91 E-value=1.5e+02 Score=25.10 Aligned_cols=35 Identities=20% Similarity=0.326 Sum_probs=16.2
Q ss_pred hhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14534 16 KLFLKTKHHLEKEQHVINHKMKTLQAINEEILQRI 50 (423)
Q Consensus 16 ~~~~~~~~~le~~~~~~~~~~~~l~~~~~~~~~r~ 50 (423)
++|.+-..=++.........++.|++-+..-..|.
T Consensus 3 ~~f~~~~~~v~~el~~t~~d~~LLe~mN~~~~~kY 37 (99)
T PF10046_consen 3 RMFSKVSKYVESELEATNEDYNLLENMNKATSLKY 37 (99)
T ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444455556655444333333
No 308
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=51.83 E-value=4.4e+02 Score=30.58 Aligned_cols=40 Identities=15% Similarity=0.195 Sum_probs=19.3
Q ss_pred hhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q psy14534 128 ESDANYLKSTVSTLATLQEKVEANNIIMQALSDANYLKSTV 168 (423)
Q Consensus 128 ~n~s~~i~s~~~sis~lqek~~~~~kv~~le~Q~~~I~~l~ 168 (423)
.|.-++++-.+.+++.-| ..+.-+||-.+|.-..+|+-++
T Consensus 167 r~~E~~~~~~~ae~a~kq-hle~vkkiakLEaEC~rLr~l~ 206 (769)
T PF05911_consen 167 RNEEREYSRRAAEAASKQ-HLESVKKIAKLEAECQRLRALV 206 (769)
T ss_pred HHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444442222 2223444556677777776665
No 309
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=51.76 E-value=22 Score=27.60 Aligned_cols=43 Identities=19% Similarity=0.288 Sum_probs=18.4
Q ss_pred HHHhhhhhhhhhHHHHHHhhccccccchhhhhhhhHHHHHHHH
Q psy14534 46 ILQRISHLETSSQTNVKTLFNITKQISGVEHLHSSMMELLESI 88 (423)
Q Consensus 46 ~~~r~~~~e~~~~~l~~~~~n~s~q~~~~~k~~~s~~el~e~v 88 (423)
++.+|.+++.+...+.+++..++..|-.+++.=--+|.|+|-|
T Consensus 5 lEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll~lYE~V 47 (55)
T PF05377_consen 5 LENELPRIESSINTVKKENEEISESVEKIEENVKDLLSLYEVV 47 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444433333333344444444
No 310
>KOG0980|consensus
Probab=51.71 E-value=4.7e+02 Score=30.86 Aligned_cols=13 Identities=15% Similarity=0.524 Sum_probs=9.5
Q ss_pred ccccccChHhhcc
Q psy14534 267 MQEFNLKWTDYAQ 279 (423)
Q Consensus 267 sv~FnR~W~eY~~ 279 (423)
...|.+.|+.|-.
T Consensus 634 ~~~~e~~~~~yla 646 (980)
T KOG0980|consen 634 ATQFETSFNNYLA 646 (980)
T ss_pred HHHHHHHHhhhcC
Confidence 3568888888864
No 311
>KOG0243|consensus
Probab=50.56 E-value=1.7e+02 Score=34.79 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=15.0
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHH
Q psy14534 19 LKTKHHLEKEQHVINHKMKTLQA 41 (423)
Q Consensus 19 ~~~~~~le~~~~~~~~~~~~l~~ 41 (423)
.++|.++|.+...+++++..++.
T Consensus 447 ~~~ieele~el~~~~~~l~~~~e 469 (1041)
T KOG0243|consen 447 AEQIEELEEELENLEKQLKDLTE 469 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777776655544
No 312
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=50.40 E-value=46 Score=28.61 Aligned_cols=62 Identities=15% Similarity=0.212 Sum_probs=41.8
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHH--HHhhhhhhhhhHHHHHHhhccccccchhhhhhhh
Q psy14534 19 LKTKHHLEKEQHVINHKMKTLQAINEEI--LQRISHLETSSQTNVKTLFNITKQISGVEHLHSS 80 (423)
Q Consensus 19 ~~~~~~le~~~~~~~~~~~~l~~~~~~~--~~r~~~~e~~~~~l~~~~~n~s~q~~~~~k~~~s 80 (423)
++.+..|+..+...++++..++..++++ .+=+..|+.+..++.+++..++.+|..++++-+=
T Consensus 34 ~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~l 97 (106)
T PF10805_consen 34 REDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDL 97 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 5677777777777777777777777666 5556666666666666666666666555554433
No 313
>PF05130 FlgN: FlgN protein; InterPro: IPR007809 Flagella synthesis protein FlgN is an export chaperone involved in flagellar synthesis []. This entry represents a FlgN-like domain, consisting of a 4 long helices bundle, where the last helix is shorter than the three others.; GO: 0009296 flagellum assembly, 0019861 flagellum; PDB: 2FUP_A 3OPC_A.
Probab=50.26 E-value=99 Score=26.19 Aligned_cols=66 Identities=21% Similarity=0.237 Sum_probs=33.1
Q ss_pred ccchhhhhhhhHHHHHHHHHHHHHHhhhcchhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhh
Q psy14534 70 QISGVEHLHSSMMELLESIETIENKVDYNLPTIQREISKLEFGVAQINSTLQVVNETRESDANYLKSTVSTL 141 (423)
Q Consensus 70 q~~~~~k~~~s~~el~e~ve~~~~~~d~~ip~~~~EI~e~e~~l~q~ts~l~~~~Ee~~n~s~~i~s~~~si 141 (423)
++..++.+-...-.+++.++.++......+..+..+ ..+..+..... ..+++..+..++..++..+
T Consensus 35 d~~~l~~~~~~k~~l~~~l~~le~~r~~~~~~~~~~--~~~~~l~~~~~----~~~~l~~~~~~l~~~~~~~ 100 (143)
T PF05130_consen 35 DIDELEELVEEKQELLEELRELEKQRQQLLAKLGAE--PEEATLSELIE----EREELQALWRELRELLEEL 100 (143)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----SCHHHHHHHHC----CCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc--cccccHHHHHh----ccHHHHHHHHHHHHHHHHH
Confidence 555666666666677777777776665444444333 12222222222 4444544555554444444
No 314
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=50.18 E-value=4.5e+02 Score=30.20 Aligned_cols=35 Identities=17% Similarity=0.031 Sum_probs=18.9
Q ss_pred HhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhh
Q psy14534 107 SKLEFGVAQINSTLQVVNETRESDANYLKSTVSTL 141 (423)
Q Consensus 107 ~e~e~~l~q~ts~l~~~~Ee~~n~s~~i~s~~~si 141 (423)
++.|..++-.|-+|+-..-++..+...-+-+-..+
T Consensus 373 ~~~ed~lk~l~~eLqkks~eleEmtk~k~~ke~el 407 (786)
T PF05483_consen 373 KKNEDQLKILTMELQKKSSELEEMTKQKNNKEVEL 407 (786)
T ss_pred HHhHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHH
Confidence 34455566666666666656655554444444443
No 315
>PRK15048 methyl-accepting chemotaxis protein II; Provisional
Probab=50.05 E-value=3e+02 Score=29.56 Aligned_cols=18 Identities=6% Similarity=0.169 Sum_probs=7.5
Q ss_pred HHHHHHHHhhhHHHHHHH
Q psy14534 131 ANYLKSTVSTLATLQEKV 148 (423)
Q Consensus 131 s~~i~s~~~sis~lqek~ 148 (423)
+.+|..++..|..+=++.
T Consensus 356 ~~~I~~i~~~I~~Ia~QT 373 (553)
T PRK15048 356 SKKIADIISVIDGIAFQT 373 (553)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444333333
No 316
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=49.62 E-value=84 Score=26.14 Aligned_cols=35 Identities=20% Similarity=0.409 Sum_probs=22.5
Q ss_pred HHHHHHHHH-HHHHhhhcchhHHHHHHhhhhhhhhhh
Q psy14534 82 MELLESIET-IENKVDYNLPTIQREISKLEFGVAQIN 117 (423)
Q Consensus 82 ~el~e~ve~-~~~~~d~~ip~~~~EI~e~e~~l~q~t 117 (423)
+|+|+.+|. ++.++ .+|.=++-||.++.+...+.+
T Consensus 3 ~EvleqLE~KIqqAv-dtI~LLqmEieELKekn~~L~ 38 (79)
T PRK15422 3 LEVFEKLEAKVQQAI-DTITLLQMEIEELKEKNNSLS 38 (79)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 467777653 55555 467777888887766544433
No 317
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=49.47 E-value=60 Score=36.30 Aligned_cols=13 Identities=8% Similarity=0.153 Sum_probs=6.8
Q ss_pred HHHhhHHHHHHHH
Q psy14534 20 KTKHHLEKEQHVI 32 (423)
Q Consensus 20 ~~~~~le~~~~~~ 32 (423)
..|.++|++...+
T Consensus 359 ~kl~~vEr~~~~~ 371 (652)
T COG2433 359 PKLEKVERKLPEL 371 (652)
T ss_pred HHHHHHHHhcccc
Confidence 3455555555544
No 318
>PF11172 DUF2959: Protein of unknown function (DUF2959); InterPro: IPR021342 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=49.05 E-value=2.6e+02 Score=27.15 Aligned_cols=83 Identities=16% Similarity=0.281 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHH-------HHhhccc-cccc--hhhhhhhhHHHHHHHHHHHHHHhhhcc
Q psy14534 30 HVINHKMKTLQAINEEILQRISHLETSSQTNV-------KTLFNIT-KQIS--GVEHLHSSMMELLESIETIENKVDYNL 99 (423)
Q Consensus 30 ~~~~~~~~~l~~~~~~~~~r~~~~e~~~~~l~-------~~~~n~s-~q~~--~~~k~~~s~~el~e~ve~~~~~~d~~i 99 (423)
..+..+...-++.-+...+||+.+|.-...|- ....|.+ |+-| .+..+..+--+|+.++...|.+++--+
T Consensus 67 ~~ln~~ye~s~~~A~~V~~RI~~vE~Va~ALF~EWe~EL~~Y~~~sLR~~S~~kL~~tr~~Y~~L~~aM~~Ae~km~PVL 146 (201)
T PF11172_consen 67 NALNDEYESSEDAAEEVSDRIDAVEDVADALFDEWEQELDQYSNASLRRASEQKLAETRRRYAQLIKAMRRAESKMQPVL 146 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHH
Confidence 33333333333344567779988888766664 3344544 3333 556667777789999999998886555
Q ss_pred hhHHHHHHhhhhh
Q psy14534 100 PTIQREISKLEFG 112 (423)
Q Consensus 100 p~~~~EI~e~e~~ 112 (423)
..++--.==+..+
T Consensus 147 ~~~~D~vL~LKHN 159 (201)
T PF11172_consen 147 AAFRDQVLYLKHN 159 (201)
T ss_pred HHHHHHHHHHhcc
Confidence 5555444333333
No 319
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=48.86 E-value=2.6e+02 Score=33.60 Aligned_cols=30 Identities=23% Similarity=0.404 Sum_probs=16.0
Q ss_pred hHHHHHHHHHHHHHHhhhcchhHHHHHHhh
Q psy14534 80 SMMELLESIETIENKVDYNLPTIQREISKL 109 (423)
Q Consensus 80 s~~el~e~ve~~~~~~d~~ip~~~~EI~e~ 109 (423)
.++++-+.+++|+...=+++++|++=|+..
T Consensus 1180 yl~eitKqIsaLe~e~PKnltdvK~missf 1209 (1439)
T PF12252_consen 1180 YLVEITKQISALEKEKPKNLTDVKSMISSF 1209 (1439)
T ss_pred HHHHHHHHHHHHHhhCCCchhhHHHHHHHH
Confidence 344555555556554555555555555444
No 320
>COG1392 Phosphate transport regulator (distant homolog of PhoU) [Inorganic ion transport and metabolism]
Probab=48.85 E-value=2.6e+02 Score=27.13 Aligned_cols=136 Identities=13% Similarity=0.078 Sum_probs=74.4
Q ss_pred ccchhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhc-cc----ccc-----chhhhhhhhH
Q psy14534 12 YRNGKLFLKTKHHLEKEQHVINHKMKTLQAINEEILQRISHLETSSQTNVKTLFN-IT----KQI-----SGVEHLHSSM 81 (423)
Q Consensus 12 ~r~~~~~~~~~~~le~~~~~~~~~~~~l~~~~~~~~~r~~~~e~~~~~l~~~~~n-~s----~q~-----~~~~k~~~s~ 81 (423)
.+|-..+.+.++-+....+.+.+- -....+.+.++|..+|.+--++..++-+ +. .++ -.+-...-.+
T Consensus 16 ~~h~~~v~~~v~~~~~~f~~~~~g---~~~~~e~~~~~I~~lE~~aD~ik~~i~~~l~~~~flP~~R~Dil~L~~~~D~i 92 (217)
T COG1392 16 QRHLEKVAETVKLLAPAFEALRRG---DYEDAEELLKEIKDLEHEADEIKREIRLELYKGFFLPFDREDILELIESQDDI 92 (217)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcC---CchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHH
Confidence 344444444444444443332221 1123577888999999988887766655 22 222 2333333344
Q ss_pred HHHHHHHHHHHHHhhhcch-hHHHHHHhhhhhhhhhhhhhhhhhhhhhhhHHH---HHHHHhhhHHHHHHHHH
Q psy14534 82 MELLESIETIENKVDYNLP-TIQREISKLEFGVAQINSTLQVVNETRESDANY---LKSTVSTLATLQEKVEA 150 (423)
Q Consensus 82 ~el~e~ve~~~~~~d~~ip-~~~~EI~e~e~~l~q~ts~l~~~~Ee~~n~s~~---i~s~~~sis~lqek~~~ 150 (423)
++..+++-..-.-.+..+| +++.++.+.=...-+++..+...=+++.++... +..++..|..+++..+.
T Consensus 93 ~D~~ed~A~~l~l~~~~ip~~~~e~~~~~~~~~~~a~~~~~~ai~~L~~~~e~~~~~~~i~~eI~~~E~e~D~ 165 (217)
T COG1392 93 ADAAEDAAKLLLLRKPFIPEELDEEFLRLVDLSLKAAELLAEAIELLEDLLESADRLLEIIKEIEALEHECDD 165 (217)
T ss_pred HHHHHHHHHHHHccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhH
Confidence 4444555444444445688 888888887777777766665444444444333 34455555555555543
No 321
>KOG0972|consensus
Probab=48.57 E-value=1.4e+02 Score=30.86 Aligned_cols=95 Identities=22% Similarity=0.205 Sum_probs=61.8
Q ss_pred cccchhhhhhhhHHHHHHHHHHHHHHhhhcchhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhhHHHHHHH
Q psy14534 69 KQISGVEHLHSSMMELLESIETIENKVDYNLPTIQREISKLEFGVAQINSTLQVVNETRESDANYLKSTVSTLATLQEKV 148 (423)
Q Consensus 69 ~q~~~~~k~~~s~~el~e~ve~~~~~~d~~ip~~~~EI~e~e~~l~q~ts~l~~~~Ee~~n~s~~i~s~~~sis~lqek~ 148 (423)
++.+.==++|-+-|+-+ -..++.+++..-|.+.+==++.-+.|.+++|.=+.+|-+++++-++-.+...++|.++++-
T Consensus 219 k~DakDWR~H~~QM~s~--~~nIe~~~~~~~~~Ldklh~eit~~LEkI~SREK~lNnqL~~l~q~fr~a~~~lse~~e~y 296 (384)
T KOG0972|consen 219 KQDAKDWRLHLEQMNSM--HKNIEQKVGNVGPYLDKLHKEITKALEKIASREKSLNNQLASLMQKFRRATDTLSELREKY 296 (384)
T ss_pred ccccHHHHHHHHHHHHH--HHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33343345554333221 1345667766666666666666677889999999999999999999999999998888876
Q ss_pred HHHHHHHHHHhhHHHHHHH
Q psy14534 149 EANNIIMQALSDANYLKST 167 (423)
Q Consensus 149 ~~~~kv~~le~Q~~~I~~l 167 (423)
+. --+++.++-+.|.+.
T Consensus 297 ~q--~~~gv~~rT~~L~eV 313 (384)
T KOG0972|consen 297 KQ--ASVGVSSRTETLDEV 313 (384)
T ss_pred HH--hcccHHHHHHHHHHH
Confidence 31 112355555555444
No 322
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=48.44 E-value=2.7e+02 Score=28.47 Aligned_cols=81 Identities=12% Similarity=0.116 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhHHHHHHhhccc--c----ccchhhhhhhhHHHHHHHHHHHHHHhhhcchhH---HHHH
Q psy14534 36 MKTLQAINEEILQRISHLETSSQTNVKTLFNIT--K----QISGVEHLHSSMMELLESIETIENKVDYNLPTI---QREI 106 (423)
Q Consensus 36 ~~~l~~~~~~~~~r~~~~e~~~~~l~~~~~n~s--~----q~~~~~k~~~s~~el~e~ve~~~~~~d~~ip~~---~~EI 106 (423)
+.-+++..+...+++...|..+...+++.-.+. . .+..+..+..++.++--.+..+...+..+-|++ +.+|
T Consensus 172 ~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L~~~l~~~~~~l~~l~~~~~~~~P~v~~l~~~i 251 (362)
T TIGR01010 172 IAFAENEVKEAEQRLNATKAELLKYQIKNKVFDPKAQSSAQLSLISTLEGELIRVQAQLAQLRSITPEQNPQVPSLQARI 251 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHH
Confidence 344444555556666666666555554432221 1 111233333333344344444443444444544 4455
Q ss_pred Hhhhhhhhhh
Q psy14534 107 SKLEFGVAQI 116 (423)
Q Consensus 107 ~e~e~~l~q~ 116 (423)
..++..+++.
T Consensus 252 ~~l~~~i~~e 261 (362)
T TIGR01010 252 KSLRKQIDEQ 261 (362)
T ss_pred HHHHHHHHHH
Confidence 5555554443
No 323
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=48.01 E-value=4.1e+02 Score=29.11 Aligned_cols=72 Identities=21% Similarity=0.243 Sum_probs=38.9
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHhhhcchhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhhHHHHHHH
Q psy14534 73 GVEHLHSSMMELLESIETIENKVDYNLPTIQREISKLEFGVAQINSTLQVVNETRESDANYLKSTVSTLATLQEKV 148 (423)
Q Consensus 73 ~~~k~~~s~~el~e~ve~~~~~~d~~ip~~~~EI~e~e~~l~q~ts~l~~~~Ee~~n~s~~i~s~~~sis~lqek~ 148 (423)
-++||.+-|.+|+|+.-.+.=.. .++.+=+.-+.+.++-|--.|+..+-|-+-+..+++-+-..--.|||+-
T Consensus 363 iinkLk~niEeLIedKY~viLEK----nd~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry 434 (527)
T PF15066_consen 363 IINKLKENIEELIEDKYRVILEK----NDIEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQERY 434 (527)
T ss_pred HHHHHHHHHHHHHHhHhHhhhhh----hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHH
Confidence 45677777777777654432111 1222333334444555555556666666666666666666555566553
No 324
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=47.98 E-value=4.2e+02 Score=29.28 Aligned_cols=24 Identities=17% Similarity=0.198 Sum_probs=10.7
Q ss_pred hhhhhhhhhhhhhhHHHHHHHHhh
Q psy14534 117 NSTLQVVNETRESDANYLKSTVST 140 (423)
Q Consensus 117 ts~l~~~~Ee~~n~s~~i~s~~~s 140 (423)
.+.+..++|-+..+..+|+++...
T Consensus 411 ~~~l~~v~eKVd~LpqqI~~vs~K 434 (531)
T PF15450_consen 411 EKHLKEVQEKVDSLPQQIEEVSDK 434 (531)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHH
Confidence 334444444444444444444433
No 325
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=47.87 E-value=1.3e+02 Score=24.67 Aligned_cols=15 Identities=7% Similarity=0.235 Sum_probs=5.2
Q ss_pred hhhHHHHHHHHHHHH
Q psy14534 78 HSSMMELLESIETIE 92 (423)
Q Consensus 78 ~~s~~el~e~ve~~~ 92 (423)
.+.+..|-..+..|.
T Consensus 9 n~~v~~l~k~~~~lG 23 (102)
T PF14523_consen 9 NQNVSQLEKLVNQLG 23 (102)
T ss_dssp HHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhC
Confidence 333333333333333
No 326
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=47.84 E-value=1.4e+02 Score=26.59 Aligned_cols=66 Identities=14% Similarity=0.248 Sum_probs=34.1
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhccccccchhhhhhhhHHHHHHHHHHHHHHhhh
Q psy14534 18 FLKTKHHLEKEQHVINHKMKTLQAINEEILQRISHLETSSQTNVKTLFNITKQISGVEHLHSSMMELLESIETIENKVDY 97 (423)
Q Consensus 18 ~~~~~~~le~~~~~~~~~~~~l~~~~~~~~~r~~~~e~~~~~l~~~~~n~s~q~~~~~k~~~s~~el~e~ve~~~~~~d~ 97 (423)
+..+|+++|-....+..+++. |+.+-..+..+|+.++.....+......+-.|-..+..++.+.+.
T Consensus 21 L~s~lr~~E~E~~~l~~el~~--------------l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t 86 (120)
T PF12325_consen 21 LQSQLRRLEGELASLQEELAR--------------LEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQT 86 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555554444444 444445555555555555544444555555555555555555543
No 327
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=47.83 E-value=49 Score=29.50 Aligned_cols=19 Identities=26% Similarity=0.305 Sum_probs=7.5
Q ss_pred HHHHHhhHHHHHHHHHHHH
Q psy14534 18 FLKTKHHLEKEQHVINHKM 36 (423)
Q Consensus 18 ~~~~~~~le~~~~~~~~~~ 36 (423)
|..++..|+..++.+..+.
T Consensus 13 L~~~~~~le~~i~~~~~~~ 31 (171)
T PF03357_consen 13 LEKQIKRLEKKIKKLEKKA 31 (171)
T ss_dssp HHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444433333
No 328
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=47.81 E-value=1e+02 Score=24.90 Aligned_cols=45 Identities=13% Similarity=0.167 Sum_probs=24.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhccc
Q psy14534 24 HLEKEQHVINHKMKTLQAINEEILQRISHLETSSQTNVKTLFNIT 68 (423)
Q Consensus 24 ~le~~~~~~~~~~~~l~~~~~~~~~r~~~~e~~~~~l~~~~~n~s 68 (423)
+|+++....+.+.+.|..-++.+....-.+....+.|...+...-
T Consensus 2 sl~~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e 46 (74)
T PF12329_consen 2 SLEKKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELE 46 (74)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 456666666666666665555555544444444444444443333
No 329
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=47.79 E-value=1.2e+02 Score=29.95 Aligned_cols=15 Identities=13% Similarity=-0.017 Sum_probs=6.8
Q ss_pred hhhhHHHHHHHHhhh
Q psy14534 127 RESDANYLKSTVSTL 141 (423)
Q Consensus 127 ~~n~s~~i~s~~~si 141 (423)
++.++.+..+|...+
T Consensus 122 i~k~r~e~~~ml~ev 136 (230)
T PF03904_consen 122 IKKVREENKSMLQEV 136 (230)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444444
No 330
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=47.50 E-value=41 Score=25.12 Aligned_cols=33 Identities=15% Similarity=0.355 Sum_probs=22.1
Q ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14534 17 LFLKTKHHLEKEQHVINHKMKTLQAINEEILQR 49 (423)
Q Consensus 17 ~~~~~~~~le~~~~~~~~~~~~l~~~~~~~~~r 49 (423)
+|.++-.+.|.++..++.+.++||+..+++.++
T Consensus 9 lLqe~~d~IEqkiedid~qIaeLe~KR~~Lv~q 41 (46)
T PF08946_consen 9 LLQEHYDNIEQKIEDIDEQIAELEAKRQRLVDQ 41 (46)
T ss_dssp ------THHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 566667788899999999999998877766654
No 331
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=47.23 E-value=1.7e+02 Score=26.21 Aligned_cols=44 Identities=14% Similarity=0.221 Sum_probs=19.8
Q ss_pred hhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHH
Q psy14534 124 NETRESDANYLKSTVSTLATLQEKVEANNIIMQALSDANYLKST 167 (423)
Q Consensus 124 ~Ee~~n~s~~i~s~~~sis~lqek~~~~~kv~~le~Q~~~I~~l 167 (423)
++.+...+..|.+....+..|-.+....+.+..+..+++.|++.
T Consensus 92 K~~L~~ak~~L~~~~~eL~~L~~~s~~~~~mi~iL~~Ie~l~~v 135 (142)
T PF04048_consen 92 KESLQEAKSLLGCRREELKELWQRSQEYKEMIEILDQIEELRQV 135 (142)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333444444444444444444444444444455555555433
No 332
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.14 E-value=1.5e+02 Score=24.21 Aligned_cols=43 Identities=23% Similarity=0.146 Sum_probs=29.3
Q ss_pred HhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhhHHHHHHHH
Q psy14534 107 SKLEFGVAQINSTLQVVNETRESDANYLKSTVSTLATLQEKVE 149 (423)
Q Consensus 107 ~e~e~~l~q~ts~l~~~~Ee~~n~s~~i~s~~~sis~lqek~~ 149 (423)
.++|..+.+..-++..++=|+..++..=++....++.+|..++
T Consensus 7 ekLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~re 49 (79)
T COG3074 7 EKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQRE 49 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHH
Confidence 4566777777778888888887777666666666655555543
No 333
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=47.12 E-value=5.2e+02 Score=30.03 Aligned_cols=58 Identities=21% Similarity=0.331 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHhhh----------cchhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHh
Q psy14534 82 MELLESIETIENKVDY----------NLPTIQREISKLEFGVAQINSTLQVVNETRESDANYLKSTVS 139 (423)
Q Consensus 82 ~el~e~ve~~~~~~d~----------~ip~~~~EI~e~e~~l~q~ts~l~~~~Ee~~n~s~~i~s~~~ 139 (423)
.++.+.++.++...++ .+-..+..+++.|..++...++|...++--..+-.+|..+.+
T Consensus 592 ~el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e 659 (769)
T PF05911_consen 592 KELEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKE 659 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666666655432 222334444444444444444444444333333333333333
No 334
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=47.01 E-value=1.4e+02 Score=24.54 Aligned_cols=25 Identities=20% Similarity=0.215 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHhhhhhhhhhHHHH
Q psy14534 37 KTLQAINEEILQRISHLETSSQTNV 61 (423)
Q Consensus 37 ~~l~~~~~~~~~r~~~~e~~~~~l~ 61 (423)
..+......+...+..|+.+.+++.
T Consensus 8 ~~l~~~l~~~~~q~~~l~~~~~~~~ 32 (106)
T PF01920_consen 8 QELNQQLQQLEQQIQQLERQLRELE 32 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334445555555555555443
No 335
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=46.74 E-value=6.5 Score=44.24 Aligned_cols=19 Identities=11% Similarity=0.319 Sum_probs=0.0
Q ss_pred hhHHHHHHhhhhhhhhhhh
Q psy14534 100 PTIQREISKLEFGVAQINS 118 (423)
Q Consensus 100 p~~~~EI~e~e~~l~q~ts 118 (423)
++++..|.+++.+.+.+..
T Consensus 455 ~~l~erl~rLe~ENk~Lk~ 473 (713)
T PF05622_consen 455 AELRERLLRLEHENKRLKE 473 (713)
T ss_dssp -------------------
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3456666666666555533
No 336
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=46.51 E-value=89 Score=31.04 Aligned_cols=30 Identities=10% Similarity=0.124 Sum_probs=19.8
Q ss_pred cchhHHHHHHhhhhhhhhhhhhhhhhhhhh
Q psy14534 98 NLPTIQREISKLEFGVAQINSTLQVVNETR 127 (423)
Q Consensus 98 ~ip~~~~EI~e~e~~l~q~ts~l~~~~Ee~ 127 (423)
+..-+|.-..|+|+++++...+++.++-|+
T Consensus 87 QRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev 116 (248)
T PF08172_consen 87 QRDRFRQRNAELEEELRKQQQTISSLRREV 116 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444557778888888877666655554444
No 337
>KOG4559|consensus
Probab=46.47 E-value=1.2e+02 Score=26.58 Aligned_cols=82 Identities=12% Similarity=0.152 Sum_probs=50.2
Q ss_pred hHHHHHHhhccccccchhhhhhhhHH--HHHHHHHHHHHHhhhcchhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhHHHH
Q psy14534 57 SQTNVKTLFNITKQISGVEHLHSSMM--ELLESIETIENKVDYNLPTIQREISKLEFGVAQINSTLQVVNETRESDANYL 134 (423)
Q Consensus 57 ~~~l~~~~~n~s~q~~~~~k~~~s~~--el~e~ve~~~~~~d~~ip~~~~EI~e~e~~l~q~ts~l~~~~Ee~~n~s~~i 134 (423)
.++|+-.+||-+-+. ..+.|.+++. .|||.+...--+ .=..++..-+.++-.+++|...-|.+.-+-.+|
T Consensus 27 irqLAdkM~dKt~ef-~qHeLe~~iEdYKLLEeMNkaTaa-------kY~DMk~iAEkla~k~deLn~KfenL~P~lqQI 98 (120)
T KOG4559|consen 27 IRQLADKMFDKTEEF-FQHELEAPIEDYKLLEEMNKATAA-------KYKDMKQIAEKLAGKLDELNLKFENLAPMLQQI 98 (120)
T ss_pred HHHHHHHHHHhHHHH-HHHHHcCcHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHccchHHHHHHHHHHHHHHHHH
Confidence 345566666655443 3345556653 355544432222 223455556677777888888888888888888
Q ss_pred HHHHhhhHHHHH
Q psy14534 135 KSTVSTLATLQE 146 (423)
Q Consensus 135 ~s~~~sis~lqe 146 (423)
.++.+++.+|++
T Consensus 99 Daiddst~kLEa 110 (120)
T KOG4559|consen 99 DAIDDSTDKLEA 110 (120)
T ss_pred HHHhhHHHHHHH
Confidence 888888866654
No 338
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=46.38 E-value=3.4e+02 Score=27.72 Aligned_cols=18 Identities=17% Similarity=0.442 Sum_probs=7.9
Q ss_pred hHHHHHHhhhhhhhhhhh
Q psy14534 101 TIQREISKLEFGVAQINS 118 (423)
Q Consensus 101 ~~~~EI~e~e~~l~q~ts 118 (423)
.++.||.+.-..++++-.
T Consensus 241 tfk~Emekm~Kk~kklEK 258 (309)
T PF09728_consen 241 TFKKEMEKMSKKIKKLEK 258 (309)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334555444444443333
No 339
>KOG0982|consensus
Probab=46.28 E-value=4.2e+02 Score=28.76 Aligned_cols=50 Identities=12% Similarity=0.065 Sum_probs=22.3
Q ss_pred cchhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhhHHHHHH
Q psy14534 98 NLPTIQREISKLEFGVAQINSTLQVVNETRESDANYLKSTVSTLATLQEK 147 (423)
Q Consensus 98 ~ip~~~~EI~e~e~~l~q~ts~l~~~~Ee~~n~s~~i~s~~~sis~lqek 147 (423)
++|.++.=+.|++++.-++.-.|-.+++.+.-....-..|+.-++..|+.
T Consensus 319 ~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm~d~Lrrfq~e 368 (502)
T KOG0982|consen 319 LIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLRVRMNDILRRFQEE 368 (502)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444555555555554444444444444443333333344444333333
No 340
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=46.04 E-value=93 Score=33.06 Aligned_cols=27 Identities=15% Similarity=0.446 Sum_probs=13.1
Q ss_pred hhHHHHHHhhhhhhhhhhhhhhhhhhh
Q psy14534 100 PTIQREISKLEFGVAQINSTLQVVNET 126 (423)
Q Consensus 100 p~~~~EI~e~e~~l~q~ts~l~~~~Ee 126 (423)
|+++.++.+++.+++++...+..++..
T Consensus 330 ~~l~~~~~~l~~~~~~~~~~l~~l~~~ 356 (451)
T PF03961_consen 330 PELKEKLEELEEELEELKEELEKLKKN 356 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555544444433333
No 341
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=45.59 E-value=2.2e+02 Score=25.31 Aligned_cols=70 Identities=21% Similarity=0.244 Sum_probs=47.5
Q ss_pred hhHHHHHHHHHHHHHHhhhcchhHHHHHHhhhhhhhhhhhhhhhhh----hhhhhhHHHHHHHHhhhHHHHHHHHH
Q psy14534 79 SSMMELLESIETIENKVDYNLPTIQREISKLEFGVAQINSTLQVVN----ETRESDANYLKSTVSTLATLQEKVEA 150 (423)
Q Consensus 79 ~s~~el~e~ve~~~~~~d~~ip~~~~EI~e~e~~l~q~ts~l~~~~----Ee~~n~s~~i~s~~~sis~lqek~~~ 150 (423)
+.+.+|+++=+.++.-| .++|.++. +...-+.+...+..|+..| +++.+++.++..+...+..|+.+-.-
T Consensus 7 ~eL~~Ll~d~~~l~~~v-~~l~~~~~-~~~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~ 80 (150)
T PF07200_consen 7 EELQELLSDEEKLDAFV-KSLPQVQE-LQQEREELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQE 80 (150)
T ss_dssp HHHHHHHHH-HHHHHHG-GGGS--HH-HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCHHHHHHHH-HcCHHHHH-HHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34568899988888866 67777654 5555555555555555555 89999999999888888777666543
No 342
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=45.38 E-value=3.2e+02 Score=30.10 Aligned_cols=21 Identities=14% Similarity=0.233 Sum_probs=8.8
Q ss_pred hHHHHHHhhhhhhhhhhhhhh
Q psy14534 101 TIQREISKLEFGVAQINSTLQ 121 (423)
Q Consensus 101 ~~~~EI~e~e~~l~q~ts~l~ 121 (423)
+-..|+..+..+++..+..+.
T Consensus 80 ~a~~e~~~L~~eL~~~~~~l~ 100 (593)
T PF06248_consen 80 DAAEELQELKRELEENEQLLE 100 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444333
No 343
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=45.29 E-value=1.4e+02 Score=32.46 Aligned_cols=48 Identities=19% Similarity=0.183 Sum_probs=30.8
Q ss_pred CCCCCcccchhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy14534 6 ILPDPRYRNGKLFLKTKHHLEKEQHVINHKMKTLQAINEEILQRISHL 53 (423)
Q Consensus 6 ~~~~~~~r~~~~~~~~~~~le~~~~~~~~~~~~l~~~~~~~~~r~~~~ 53 (423)
++.|-+.---|-|-.+++++++.+..+.++=+.|++.++++-+|-..+
T Consensus 52 iegDTP~DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~i 99 (472)
T TIGR03752 52 IEGDTPADTLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSI 99 (472)
T ss_pred CCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 345556666677777777777777777776666666666555544443
No 344
>TIGR00020 prfB peptide chain release factor 2. In many but not all taxa, there is a conserved real translational frameshift at a TGA codon. RF-2 helps terminate translation at TGA codons and can therefore regulate its own production by readthrough when RF-2 is insufficient. There is a Pfam model called "RF-1" for the superfamily of RF-1, RF-2, mitochondrial, RF-H, etc.
Probab=45.00 E-value=1.2e+02 Score=31.95 Aligned_cols=16 Identities=6% Similarity=0.034 Sum_probs=7.8
Q ss_pred HHHHhhHHHHHHHHHH
Q psy14534 19 LKTKHHLEKEQHVINH 34 (423)
Q Consensus 19 ~~~~~~le~~~~~~~~ 34 (423)
.+++++|+.....+..
T Consensus 6 ~~~~~~~~~~~~~~~~ 21 (364)
T TIGR00020 6 NNRIEDLTSRLDTVRG 21 (364)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3445555555444443
No 345
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=44.80 E-value=79 Score=33.07 Aligned_cols=18 Identities=22% Similarity=0.224 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHhhhhh
Q psy14534 36 MKTLQAINEEILQRISHL 53 (423)
Q Consensus 36 ~~~l~~~~~~~~~r~~~~ 53 (423)
|.++....+++..+|..-
T Consensus 9 l~~~~~r~~el~~~L~~p 26 (363)
T COG0216 9 LESLLERYEELEALLSDP 26 (363)
T ss_pred HHHHHHHHHHHHHHhcCc
Confidence 344433444444444433
No 346
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=44.79 E-value=5.4e+02 Score=29.59 Aligned_cols=36 Identities=8% Similarity=0.203 Sum_probs=21.4
Q ss_pred hhhhhhhhhhhhhhhhHHHHHHHHhhhHHHHHHHHH
Q psy14534 115 QINSTLQVVNETRESDANYLKSTVSTLATLQEKVEA 150 (423)
Q Consensus 115 q~ts~l~~~~Ee~~n~s~~i~s~~~sis~lqek~~~ 150 (423)
+.....+.+...+.|++++|-.+.-.+..||..-.+
T Consensus 584 ~k~kq~k~lenk~~~LrKqvEnk~K~ieeLqqeNk~ 619 (786)
T PF05483_consen 584 KKEKQMKILENKCNNLRKQVENKNKNIEELQQENKA 619 (786)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 334444566666777777777776666555554443
No 347
>PRK00578 prfB peptide chain release factor 2; Validated
Probab=44.44 E-value=1.2e+02 Score=31.98 Aligned_cols=18 Identities=11% Similarity=0.108 Sum_probs=9.6
Q ss_pred HHHHHhhHHHHHHHHHHH
Q psy14534 18 FLKTKHHLEKEQHVINHK 35 (423)
Q Consensus 18 ~~~~~~~le~~~~~~~~~ 35 (423)
+++.+++|.+....+...
T Consensus 5 ~~~~~~~~~~~~~~~~~~ 22 (367)
T PRK00578 5 ISERLKDLDEKLENIRGV 22 (367)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 345566666555554444
No 348
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=44.07 E-value=2.1e+02 Score=27.67 Aligned_cols=16 Identities=13% Similarity=-0.087 Sum_probs=7.4
Q ss_pred HHHhhhhhhhhhHHHH
Q psy14534 46 ILQRISHLETSSQTNV 61 (423)
Q Consensus 46 ~~~r~~~~e~~~~~l~ 61 (423)
++..|++++.+++.+.
T Consensus 137 ~EqLL~YK~~ql~~~~ 152 (195)
T PF12761_consen 137 FEQLLDYKERQLRELE 152 (195)
T ss_pred HHHHHHHHHHHHHhhh
Confidence 3444444444444443
No 349
>KOG4677|consensus
Probab=43.73 E-value=4.7e+02 Score=28.60 Aligned_cols=46 Identities=15% Similarity=0.120 Sum_probs=21.5
Q ss_pred hhhhhhhhhHHHHHHHHhhhHHHHHHHHH-HHHHHHHHhhHHHHHHH
Q psy14534 122 VVNETRESDANYLKSTVSTLATLQEKVEA-NNIIMQALSDANYLKST 167 (423)
Q Consensus 122 ~~~Ee~~n~s~~i~s~~~sis~lqek~~~-~~kv~~le~Q~~~I~~l 167 (423)
+.+-|++.+..+.---.+++..+|.++-+ -..+..+|.|+..+.+.
T Consensus 306 as~~E~ee~rve~~~s~ed~~~~q~q~~~Lrs~~~d~EAq~r~l~s~ 352 (554)
T KOG4677|consen 306 ASRKEFEETRVELPFSAEDSAHIQDQYTLLRSQIIDIEAQDRHLESA 352 (554)
T ss_pred hHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 33444444454444444555455555443 22233455555555444
No 350
>KOG4657|consensus
Probab=43.73 E-value=2.3e+02 Score=28.07 Aligned_cols=103 Identities=17% Similarity=0.168 Sum_probs=0.0
Q ss_pred hhccccccchhhhhhhhHHHHHHHHHHHHHHhhhcchhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHh-hhH
Q psy14534 64 LFNITKQISGVEHLHSSMMELLESIETIENKVDYNLPTIQREISKLEFGVAQINSTLQVVNETRESDANYLKSTVS-TLA 142 (423)
Q Consensus 64 ~~n~s~q~~~~~k~~~s~~el~e~ve~~~~~~d~~ip~~~~EI~e~e~~l~q~ts~l~~~~Ee~~n~s~~i~s~~~-sis 142 (423)
..++..+-+-+|..=++- -.+.+.++-+-+ ..+++.+.|.+.++..+.++-++++..+| +..=+...++..+ +|+
T Consensus 21 ~~~i~n~~s~~D~f~q~~--r~~~~nS~~efa-r~lS~~~~e~e~l~~~l~etene~~~~ne-L~~ek~~~q~~ieqeik 96 (246)
T KOG4657|consen 21 EKDIHNQRSKIDSFIQSP--RRRSMNSLVEFA-RALSQSQVELENLKADLRETENELVKVNE-LKTEKEARQMGIEQEIK 96 (246)
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHH-HHhhHHHHHHHHHH
Q psy14534 143 TLQEKVEANNIIMQ-ALSDANYLKSTVST 170 (423)
Q Consensus 143 ~lqek~~~~~kv~~-le~Q~~~I~~l~~~ 170 (423)
.+|++++.-.+..| +++..+..+...++
T Consensus 97 ~~q~elEvl~~n~Q~lkeE~dd~keiIs~ 125 (246)
T KOG4657|consen 97 ATQSELEVLRRNLQLLKEEKDDSKEIISQ 125 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHH
No 351
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=43.73 E-value=3.2e+02 Score=31.66 Aligned_cols=22 Identities=14% Similarity=0.131 Sum_probs=17.7
Q ss_pred CCcccchhhHHHHHhhHHHHHH
Q psy14534 9 DPRYRNGKLFLKTKHHLEKEQH 30 (423)
Q Consensus 9 ~~~~r~~~~~~~~~~~le~~~~ 30 (423)
-+-+|.-|.+++||++-|++.+
T Consensus 397 aqLrRrLrilnqqlreqe~~~k 418 (861)
T PF15254_consen 397 AQLRRRLRILNQQLREQEKAEK 418 (861)
T ss_pred HHHHHHHHHHHHHHHHHHhhcc
Confidence 3557888999999999888773
No 352
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=43.69 E-value=1.9e+02 Score=26.99 Aligned_cols=26 Identities=19% Similarity=0.312 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHhhhcchhHHHHH
Q psy14534 81 MMELLESIETIENKVDYNLPTIQREI 106 (423)
Q Consensus 81 ~~el~e~ve~~~~~~d~~ip~~~~EI 106 (423)
..+-|+++..+.+.|+..+|-++-+|
T Consensus 42 dne~id~imer~~~ieNdlg~~~~~~ 67 (157)
T COG3352 42 DNEVIDAIMERMTDIENDLGKVKIEI 67 (157)
T ss_pred ChHHHHHHHHHHHHHHhhcccccccc
Confidence 34677777777777777777554444
No 353
>KOG3759|consensus
Probab=43.54 E-value=76 Score=34.51 Aligned_cols=88 Identities=20% Similarity=0.329 Sum_probs=60.3
Q ss_pred hhhhhhhhhHHHHHHhhccccccch-hhhhhhhH--------HHHHHHHHHHHHHhhhcchhHHHHHHhhhhhhhhhhhh
Q psy14534 49 RISHLETSSQTNVKTLFNITKQISG-VEHLHSSM--------MELLESIETIENKVDYNLPTIQREISKLEFGVAQINST 119 (423)
Q Consensus 49 r~~~~e~~~~~l~~~~~n~s~q~~~-~~k~~~s~--------~el~e~ve~~~~~~d~~ip~~~~EI~e~e~~l~q~ts~ 119 (423)
||+.||.||++|-..++-+|.-.+- .+++. +| +.||.++|.| +| +.+|+. .|+-.++-+-.+-++.
T Consensus 65 rlr~leeEqerL~ssLlaLsSHFAqVQfRir-Q~vea~p~er~~LLrdLedF--AF-~Gcpd~-~~lq~~~s~~~~~~~~ 139 (621)
T KOG3759|consen 65 RLRQLEEEQERLNSSLLALSSHFAQVQFRIR-QMVEADPSERLKLLRDLEDF--AF-KGCPDM-NELQRLRSESESGNDV 139 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHH--Hh-cCCCcc-cccccccccccccchh
Confidence 8999999999999999998854442 12221 22 3677777765 34 677773 3444455555566777
Q ss_pred hhhhhhhhhhhHHHHHHHHhhh
Q psy14534 120 LQVVNETRESDANYLKSTVSTL 141 (423)
Q Consensus 120 l~~~~Ee~~n~s~~i~s~~~si 141 (423)
+---+|-.+++-+++++..+++
T Consensus 140 lekq~e~qkeLi~QLk~Ql~dL 161 (621)
T KOG3759|consen 140 LEKQNERQKELIKQLKEQLEDL 161 (621)
T ss_pred hhhhcchHHHHHHHHHHHHHHH
Confidence 7777788888888888877775
No 354
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=43.48 E-value=5.6e+02 Score=29.48 Aligned_cols=142 Identities=18% Similarity=0.219 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhh-hhhhhhhHHHHHHhhccccccc-hhhhhhhhHHHHHHHHHHHHHHh---hhcchhHHH
Q psy14534 30 HVINHKMKTLQAINEEILQRI-SHLETSSQTNVKTLFNITKQIS-GVEHLHSSMMELLESIETIENKV---DYNLPTIQR 104 (423)
Q Consensus 30 ~~~~~~~~~l~~~~~~~~~r~-~~~e~~~~~l~~~~~n~s~q~~-~~~k~~~s~~el~e~ve~~~~~~---d~~ip~~~~ 104 (423)
+.|..-+..-+-...++++.. +-||..++.=..++.+++.-=- .+..+..++-+|=++++.++.+. .+.+-.+++
T Consensus 118 e~Lraala~ae~~R~~lEE~~q~ELee~q~~Hqeql~~Lt~aHq~~l~sL~~k~~~Le~~L~~le~~r~~e~~~La~~q~ 197 (739)
T PF07111_consen 118 EELRAALAGAEVVRKNLEEGSQRELEEAQRLHQEQLSSLTQAHQEALASLTSKAEELEKSLESLETRRAGEAKELAEAQR 197 (739)
T ss_pred HHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhhhhhhhhhhhhhhhhhhhhhhhHHHH------HHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q psy14534 105 EISKLEFGVAQINSTLQVVNETRESDANYL------KSTVSTLATLQEKVEANNIIMQALSDANYLKSTVSTLAT 173 (423)
Q Consensus 105 EI~e~e~~l~q~ts~l~~~~Ee~~n~s~~i------~s~~~sis~lqek~~~~~kv~~le~Q~~~I~~l~~~v~~ 173 (423)
|-..+...|.++-..|..-.--+.+++.+| ..+...- -.|+-++.+.|.++++.-+.|..+..-+.+
T Consensus 198 e~d~L~~qLsk~~~~le~q~tlv~~LR~YvGeq~p~~~~~~~w--e~Er~~L~~tVq~L~edR~~L~~T~ELLqV 270 (739)
T PF07111_consen 198 EADLLREQLSKTQEELEAQVTLVEQLRKYVGEQVPPEVHSQAW--EPEREELLETVQHLQEDRDALQATAELLQV 270 (739)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhCCcccccHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 355
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=43.41 E-value=2.3e+02 Score=25.54 Aligned_cols=19 Identities=26% Similarity=0.349 Sum_probs=10.2
Q ss_pred hhhhhhHHHHHHHHHHHHH
Q psy14534 75 EHLHSSMMELLESIETIEN 93 (423)
Q Consensus 75 ~k~~~s~~el~e~ve~~~~ 93 (423)
.++|..+.++++.+|.|-+
T Consensus 97 ~~~~~lL~~~v~~ie~LN~ 115 (131)
T PF10158_consen 97 SRCQSLLNQTVPSIETLNE 115 (131)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4455555566666655543
No 356
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=43.37 E-value=86 Score=33.32 Aligned_cols=32 Identities=13% Similarity=0.226 Sum_probs=17.7
Q ss_pred HHHhhhhhhhhhhhhhhhhhhhhhhhHHHHHH
Q psy14534 105 EISKLEFGVAQINSTLQVVNETRESDANYLKS 136 (423)
Q Consensus 105 EI~e~e~~l~q~ts~l~~~~Ee~~n~s~~i~s 136 (423)
+|.+++.+.+++..++..++.+.+.++++|..
T Consensus 29 ~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~ 60 (425)
T PRK05431 29 ELLELDEERRELQTELEELQAERNALSKEIGQ 60 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555555544
No 357
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=43.18 E-value=1e+02 Score=27.93 Aligned_cols=51 Identities=8% Similarity=0.089 Sum_probs=25.9
Q ss_pred chhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHh
Q psy14534 14 NGKLFLKTKHHLEKEQHVINHKMKTLQAINEEILQRISHLETSSQTNVKTL 64 (423)
Q Consensus 14 ~~~~~~~~~~~le~~~~~~~~~~~~l~~~~~~~~~r~~~~e~~~~~l~~~~ 64 (423)
..+.+..++.-..+....|.++....+.-.++-.+.|+.||..-+.+..++
T Consensus 28 ~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~ 78 (160)
T PF13094_consen 28 RKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALERER 78 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555444444555555555555544444333
No 358
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=43.00 E-value=4e+02 Score=27.61 Aligned_cols=18 Identities=22% Similarity=0.237 Sum_probs=8.8
Q ss_pred HHHHHHHHHhhHHHHHHH
Q psy14534 150 ANNIIMQALSDANYLKST 167 (423)
Q Consensus 150 ~~~kv~~le~Q~~~I~~l 167 (423)
++.++.++++..+.++..
T Consensus 201 L~erl~q~qeE~~l~k~~ 218 (319)
T PF09789_consen 201 LKERLKQLQEEKELLKQT 218 (319)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444445555545554444
No 359
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=42.68 E-value=1.7e+02 Score=33.74 Aligned_cols=8 Identities=0% Similarity=-0.176 Sum_probs=2.8
Q ss_pred hhhhhHHH
Q psy14534 126 TRESDANY 133 (423)
Q Consensus 126 e~~n~s~~ 133 (423)
+++++-.+
T Consensus 585 ~~~~~i~~ 592 (782)
T PRK00409 585 EADEIIKE 592 (782)
T ss_pred HHHHHHHH
Confidence 33333333
No 360
>PF06009 Laminin_II: Laminin Domain II; InterPro: IPR010307 It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure [].; GO: 0007155 cell adhesion, 0005604 basement membrane; PDB: 2WJS_A.
Probab=42.36 E-value=8.1 Score=34.60 Aligned_cols=15 Identities=7% Similarity=0.093 Sum_probs=0.0
Q ss_pred hhhhhhhhhhhhHHH
Q psy14534 119 TLQVVNETRESDANY 133 (423)
Q Consensus 119 ~l~~~~Ee~~n~s~~ 133 (423)
.++.++|-|...+..
T Consensus 91 nI~~IrelI~qAR~~ 105 (138)
T PF06009_consen 91 NISRIRELIAQARDA 105 (138)
T ss_dssp ---------------
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 361
>PF15456 Uds1: Up-regulated During Septation
Probab=41.92 E-value=2.5e+02 Score=24.99 Aligned_cols=33 Identities=27% Similarity=0.158 Sum_probs=21.9
Q ss_pred hhhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHH
Q psy14534 123 VNETRESDANYLKSTVSTLATLQEKVEANNIIM 155 (423)
Q Consensus 123 ~~Ee~~n~s~~i~s~~~sis~lqek~~~~~kv~ 155 (423)
..||+.++++++......+..++.+..+..++.
T Consensus 20 s~eEVe~LKkEl~~L~~R~~~lr~kl~le~k~R 52 (124)
T PF15456_consen 20 SFEEVEELKKELRSLDSRLEYLRRKLALESKIR 52 (124)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777777777776666666666666654
No 362
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=41.81 E-value=1.1e+02 Score=33.23 Aligned_cols=11 Identities=9% Similarity=0.151 Sum_probs=7.0
Q ss_pred CCceEEEECCC
Q psy14534 238 HSGLQLISLGR 248 (423)
Q Consensus 238 ~sGvY~I~p~~ 248 (423)
.+|+..|.|.+
T Consensus 170 ~~~~~Wv~P~D 180 (472)
T TIGR03752 170 GGGVVWVEPQD 180 (472)
T ss_pred CCceEeecccc
Confidence 36677777654
No 363
>PF07426 Dynactin_p22: Dynactin subunit p22; InterPro: IPR009991 This family contains p22, the smallest subunit of dynactin, a complex that binds to cytoplasmic dynein and is a required activator for cytoplasmic dynein-mediated vesicular transport. Dynactin localises to the cleavage furrow and to the midbodies of dividing cells, suggesting that it may function in cytokinesis [].
Probab=41.73 E-value=2.8e+02 Score=26.03 Aligned_cols=126 Identities=16% Similarity=0.150 Sum_probs=0.0
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhccccccc-hhhhhhhhHHHHHHHHHHHHHHhh
Q psy14534 18 FLKTKHHLEKEQHVINHKMKTLQAINEEILQRISHLETSSQTNVKTLFNITKQIS-GVEHLHSSMMELLESIETIENKVD 96 (423)
Q Consensus 18 ~~~~~~~le~~~~~~~~~~~~l~~~~~~~~~r~~~~e~~~~~l~~~~~n~s~q~~-~~~k~~~s~~el~e~ve~~~~~~d 96 (423)
+-+.|...........-....++.-..++.+.-+.|+-.--.-..-.-++..++. ....-=-++-++|+.|..|+.-.|
T Consensus 35 v~~~L~~~~~~L~~~~s~re~i~~l~k~~~eL~~YLDP~~~e~~~l~~~~K~~~ILa~e~~i~~~~~~Leki~~L~pvL~ 114 (174)
T PF07426_consen 35 VIDSLLSVQSALNSAASKRERIKELFKRIEELNKYLDPNFIEEIQLPDSAKLQIILAEEDEIKSTAELLEKIKSLEPVLD 114 (174)
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcCchhhhhcccchHHHHHHHHHccHHHHHHHHHHHHHHHhhhhcC
Q ss_pred ----hcchhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhhHH
Q psy14534 97 ----YNLPTIQREISKLEFGVAQINSTLQVVNETRESDANYLKSTVSTLAT 143 (423)
Q Consensus 97 ----~~ip~~~~EI~e~e~~l~q~ts~l~~~~Ee~~n~s~~i~s~~~sis~ 143 (423)
+++|++..-+..+...-.+-..+...+.++++.+-..=|.++.++|+
T Consensus 115 se~i~~vp~~~~kL~~L~~~~~~Q~e~~~~ls~~~~~Ll~~YN~ii~~lSk 165 (174)
T PF07426_consen 115 SESIRNVPELCDKLQKLSQIHLEQQEESEELSEEVQELLQQYNKIILLLSK 165 (174)
T ss_pred cHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 364
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=41.60 E-value=1.3e+02 Score=25.48 Aligned_cols=50 Identities=16% Similarity=0.266 Sum_probs=34.6
Q ss_pred HHHHHHHHH-HHHHhhhhhhhhhHHHHHHhhccccccchhhhhhhhHHHHH
Q psy14534 36 MKTLQAINE-EILQRISHLETSSQTNVKTLFNITKQISGVEHLHSSMMELL 85 (423)
Q Consensus 36 ~~~l~~~~~-~~~~r~~~~e~~~~~l~~~~~n~s~q~~~~~k~~~s~~el~ 85 (423)
.+.|+|-.| +-..||+.|+.+...|..++--+..++....+=...++.||
T Consensus 36 V~~LKksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~~Ek~~Ll~ll 86 (87)
T PF12709_consen 36 VKALKKSYEARWEKKVDELENENKALKRENEQLKKKLDTEREEKQELLKLL 86 (87)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456655444 56778888888888888888777777766655555555554
No 365
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=41.46 E-value=1.1e+02 Score=28.59 Aligned_cols=32 Identities=16% Similarity=0.167 Sum_probs=19.2
Q ss_pred hhhhhhhhhhhhhHHHHHHHHhhhHHHHHHHH
Q psy14534 118 STLQVVNETRESDANYLKSTVSTLATLQEKVE 149 (423)
Q Consensus 118 s~l~~~~Ee~~n~s~~i~s~~~sis~lqek~~ 149 (423)
.+.+...+|+++++.+|..+-.++.+|+.+++
T Consensus 154 ~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~ 185 (192)
T PF05529_consen 154 EENKKLSEEIEKLKKELEKKEKEIEALKKQSE 185 (192)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666666666655555553
No 366
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=41.03 E-value=4.1e+02 Score=27.21 Aligned_cols=24 Identities=13% Similarity=0.040 Sum_probs=14.9
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHH
Q psy14534 22 KHHLEKEQHVINHKMKTLQAINEE 45 (423)
Q Consensus 22 ~~~le~~~~~~~~~~~~l~~~~~~ 45 (423)
|.|.|+.++-|+-+|++-+...++
T Consensus 63 LQQKEV~iRHLkakLkes~~~l~d 86 (305)
T PF15290_consen 63 LQQKEVCIRHLKAKLKESENRLHD 86 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567777777776666665444333
No 367
>PF05508 Ran-binding: RanGTP-binding protein; InterPro: IPR008812 The small Ras-like GTPase Ran plays an essential role in the transport of macromolecules in and out of the nucleus and has been implicated in spindle and nuclear envelope formation during mitosis in higher eukaryotes. The Saccharomyces cerevisiae ORF YGL164c encoding a novel RanGTP-binding protein, termed Yrb30p was identified. The protein competes with S. cerevisiae RanBP1 (Yrb1p) for binding to the GTP-bound form of S. cerevisiae Ran (Gsp1p) and is, like Yrb1p, able to form trimeric complexes with RanGTP and some of the karyopherins [].
Probab=40.80 E-value=1.2e+02 Score=31.27 Aligned_cols=57 Identities=18% Similarity=0.261 Sum_probs=31.9
Q ss_pred hhhhhhhHHHHHHhhccccccchhhhhhhhHHHHHHHHH-----HHHHHhhhcchhHHHHHHhhhhhhhhhhhh
Q psy14534 51 SHLETSSQTNVKTLFNITKQISGVEHLHSSMMELLESIE-----TIENKVDYNLPTIQREISKLEFGVAQINST 119 (423)
Q Consensus 51 ~~~e~~~~~l~~~~~n~s~q~~~~~k~~~s~~el~e~ve-----~~~~~~d~~ip~~~~EI~e~e~~l~q~ts~ 119 (423)
+.||.-+++|...|--||--| +|++-+. .||..+ ....+++.||......+...+..
T Consensus 45 ~~l~~lq~~L~~kI~IvspAI-----------DLIel~aaRGNt~Lesal-~L~~~L~~eI~~f~~~l~~~~~~ 106 (302)
T PF05508_consen 45 KELEKLQRRLESKIKIVSPAI-----------DLIELIAARGNTSLESAL-PLTKDLRREIDSFDERLEEAAEK 106 (302)
T ss_pred HHHHHHHHHHHhhhhccccHH-----------HHHHHHHhcCCccHHHHH-HHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555555555555544333 4444443 245555 55666777777777777666653
No 368
>COG3264 Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]
Probab=40.39 E-value=4.5e+02 Score=30.71 Aligned_cols=49 Identities=10% Similarity=0.210 Sum_probs=32.5
Q ss_pred HHHhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhhHHHHHHHHH-HHHHH
Q psy14534 105 EISKLEFGVAQINSTLQVVNETRESDANYLKSTVSTLATLQEKVEA-NNIIM 155 (423)
Q Consensus 105 EI~e~e~~l~q~ts~l~~~~Ee~~n~s~~i~s~~~sis~lqek~~~-~~kv~ 155 (423)
+|.++...|.+--+.+..+.++.++++.+.+.++..+ +.+++++ .+.+.
T Consensus 140 ~v~~eR~~L~~e~~~in~~~~~~e~ls~~~~~~ld~I--~~~RReLf~~~l~ 189 (835)
T COG3264 140 EVTQERDALQAEKAYINALEGQAEQLTAEVRDILDQI--LDTRRELLNSLLS 189 (835)
T ss_pred HHHHHHHHHhhhHHHHHHHhcchhhhCHHHHHHHHHH--HHHHHHHHHHHHh
Confidence 4444444445555556666667788889999999988 7778776 33333
No 369
>PF04129 Vps52: Vps52 / Sac2 family ; InterPro: IPR007258 Vps52 complexes with Vps53 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=40.38 E-value=4.6e+02 Score=28.49 Aligned_cols=59 Identities=20% Similarity=0.189 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhHHHHHHhhccccccchhhhhhhhHHHHHHHHHHHHHH
Q psy14534 36 MKTLQAINEEILQRISHLETSSQTNVKTLFNITKQISGVEHLHSSMMELLESIETIENK 94 (423)
Q Consensus 36 ~~~l~~~~~~~~~r~~~~e~~~~~l~~~~~n~s~q~~~~~k~~~s~~el~e~ve~~~~~ 94 (423)
+..|-...+.-++-|..+|..+...++.+.++|.+|..+...-.+|..-|+.-...+++
T Consensus 16 ~~~Lh~~i~~cd~~L~~le~~L~~Fq~~L~~iS~eI~~LQ~~S~~l~~~L~Nrk~~~~~ 74 (508)
T PF04129_consen 16 FADLHNQIQECDSILESLEEMLSNFQNDLGSISSEIRSLQERSSSLNVKLKNRKAVEEK 74 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 44554445567777788888888888888888888877776666665555444444433
No 370
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=40.36 E-value=3.4e+02 Score=26.36 Aligned_cols=42 Identities=19% Similarity=0.114 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhccccc
Q psy14534 29 QHVINHKMKTLQAINEEILQRISHLETSSQTNVKTLFNITKQ 70 (423)
Q Consensus 29 ~~~~~~~~~~l~~~~~~~~~r~~~~e~~~~~l~~~~~n~s~q 70 (423)
++.|+-+|++.|...-.++-=|-+|-..++.+...+-+...+
T Consensus 12 IsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~ 53 (202)
T PF06818_consen 12 ISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQ 53 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHH
Confidence 455555555554444444444444444444444444433333
No 371
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=40.30 E-value=7.1e+02 Score=29.68 Aligned_cols=22 Identities=14% Similarity=0.125 Sum_probs=12.0
Q ss_pred hhHHHHHHhhhhhhhhhhhhhh
Q psy14534 100 PTIQREISKLEFGVAQINSTLQ 121 (423)
Q Consensus 100 p~~~~EI~e~e~~l~q~ts~l~ 121 (423)
+.++.+|...+..+....+.+.
T Consensus 780 ~~l~~~i~~~~~~~~~~~~~~~ 801 (1047)
T PRK10246 780 TQLEQLKQNLENQRQQAQTLVT 801 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666665555555443
No 372
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=40.12 E-value=1.8e+02 Score=27.82 Aligned_cols=9 Identities=22% Similarity=0.844 Sum_probs=3.3
Q ss_pred HHhhccccc
Q psy14534 62 KTLFNITKQ 70 (423)
Q Consensus 62 ~~~~n~s~q 70 (423)
.+++.+.+.
T Consensus 151 ~~l~~l~~~ 159 (292)
T PF01544_consen 151 RELFDLRRE 159 (292)
T ss_dssp CHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 373
>PF05064 Nsp1_C: Nsp1-like C-terminal region; InterPro: IPR007758 The NSP1-like protein appears to be an essential component of the nuclear pore complex, for example preribosome nuclear export requires the Nup82p-Nup159p-Nsp1p complex. The C-terminal of Nsp1 is involved in binding Nup82 [], probably via coiled-coil formation [, ]. The family is related to the rotavirus nonstructural protein NSP1 which is the least conserved protein in the rotavirus genome. Its function in the replication process is not fully understood.; GO: 0017056 structural constituent of nuclear pore, 0005643 nuclear pore; PDB: 3T97_C.
Probab=39.92 E-value=40 Score=29.39 Aligned_cols=51 Identities=10% Similarity=0.126 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhccccccchhh
Q psy14534 25 LEKEQHVINHKMKTLQAINEEILQRISHLETSSQTNVKTLFNITKQISGVE 75 (423)
Q Consensus 25 le~~~~~~~~~~~~l~~~~~~~~~r~~~~e~~~~~l~~~~~n~s~q~~~~~ 75 (423)
-..++..|..++..++....+++..|..+|..|..|...+-.+-+++..+.
T Consensus 55 n~~~I~~L~~~v~~~~~~Q~~ld~~L~~ie~qQ~eLe~~L~~lE~~~~~l~ 105 (116)
T PF05064_consen 55 NGEKISKLYSEVQKAESEQKRLDQELDFIEAQQKELEELLDPLEKQVEKLL 105 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCTT----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555666556666777777777777777766666666554433
No 374
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=39.86 E-value=1e+02 Score=26.70 Aligned_cols=18 Identities=22% Similarity=0.481 Sum_probs=7.1
Q ss_pred hHHHHHHhhhhhhhhhhh
Q psy14534 101 TIQREISKLEFGVAQINS 118 (423)
Q Consensus 101 ~~~~EI~e~e~~l~q~ts 118 (423)
.+++.|++++..+.++..
T Consensus 98 ~l~~~~~~l~~~l~~l~~ 115 (129)
T cd00584 98 ELTKQIEKLQKELAKLKD 115 (129)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444333333
No 375
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=39.49 E-value=2e+02 Score=25.91 Aligned_cols=22 Identities=9% Similarity=0.359 Sum_probs=16.6
Q ss_pred HHHHHhhhhhhhhhhhhhhhhh
Q psy14534 103 QREISKLEFGVAQINSTLQVVN 124 (423)
Q Consensus 103 ~~EI~e~e~~l~q~ts~l~~~~ 124 (423)
++||..+...+.++++.+..+.
T Consensus 108 ~~dv~~L~~rId~L~~~v~~l~ 129 (132)
T PF05597_consen 108 RKDVEALSARIDQLTAQVERLA 129 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 7788888888887777776554
No 376
>PHA03161 hypothetical protein; Provisional
Probab=39.42 E-value=1.3e+02 Score=27.92 Aligned_cols=83 Identities=18% Similarity=0.209 Sum_probs=43.4
Q ss_pred cchhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhccccccchhhhhhhhHHHHHHHHHHHH
Q psy14534 13 RNGKLFLKTKHHLEKEQHVINHKMKTLQAINEEILQRISHLETSSQTNVKTLFNITKQISGVEHLHSSMMELLESIETIE 92 (423)
Q Consensus 13 r~~~~~~~~~~~le~~~~~~~~~~~~l~~~~~~~~~r~~~~e~~~~~l~~~~~n~s~q~~~~~k~~~s~~el~e~ve~~~ 92 (423)
.|+-+|++| ++.++..+.+..+.- .-.++...|..++.+.++..+++.=++. ++- -=++.+|.|.
T Consensus 31 ~~s~lF~~Q---f~~t~~~lr~~~~~~--~~~~i~~~v~~l~~~I~~k~kE~~~L~~-------fd~---kkl~~~E~L~ 95 (150)
T PHA03161 31 EKNCIFLHQ---LDHTKKSLIKHENLK--KQKSIEGMLQAVDLSIQEKKKELSLLKA-------FDR---HKLSAAEDLQ 95 (150)
T ss_pred CccHHHHHH---HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhh-------cCH---HHHHHHHHHH
Confidence 355566554 455555554443322 3345666677777766666665544432 211 1245566667
Q ss_pred HHhhhcchhHHHHHHhhh
Q psy14534 93 NKVDYNLPTIQREISKLE 110 (423)
Q Consensus 93 ~~~d~~ip~~~~EI~e~e 110 (423)
++++..-.++.-||.-++
T Consensus 96 drv~eLkeel~~ELe~l~ 113 (150)
T PHA03161 96 DKILELKEDIHFEIEALN 113 (150)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 777555555555554433
No 377
>KOG4005|consensus
Probab=39.27 E-value=1.4e+02 Score=29.96 Aligned_cols=61 Identities=13% Similarity=-0.031 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHhhhhhhhhhHHHHHHhhccccccc-hhhhhhhhHHHHHHHHHHHHHHhhh
Q psy14534 37 KTLQAINEEILQRISHLETSSQTNVKTLFNITKQIS-GVEHLHSSMMELLESIETIENKVDY 97 (423)
Q Consensus 37 ~~l~~~~~~~~~r~~~~e~~~~~l~~~~~n~s~q~~-~~~k~~~s~~el~e~ve~~~~~~d~ 97 (423)
+..+.+|++++.-|+.|+.+-++|.+++--+-.+=. -+.+-|++.++|=+--+.|.+..|.
T Consensus 86 DrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~~~~ 147 (292)
T KOG4005|consen 86 DRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAELKQQ 147 (292)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHHH
Confidence 556668999999999999999999877655444332 3455555554444333444444433
No 378
>COG5414 TATA-binding protein-associated factor [Transcription]
Probab=39.26 E-value=68 Score=32.96 Aligned_cols=29 Identities=21% Similarity=0.251 Sum_probs=25.8
Q ss_pred CcccchhhHHHHHhhHHHHHHHHHHHHHH
Q psy14534 10 PRYRNGKLFLKTKHHLEKEQHVINHKMKT 38 (423)
Q Consensus 10 ~~~r~~~~~~~~~~~le~~~~~~~~~~~~ 38 (423)
--.||++++.+.|..||+++...+|+|.+
T Consensus 331 En~r~~~Ll~d~lnELE~~i~~~r~~~~~ 359 (392)
T COG5414 331 ENERHTELLADELNELEKGIEEKRRQMES 359 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34689999999999999999999999854
No 379
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=39.20 E-value=2.4e+02 Score=24.00 Aligned_cols=25 Identities=20% Similarity=0.432 Sum_probs=11.7
Q ss_pred hhHHHHHHhhhhhhhhhhhhhhhhh
Q psy14534 100 PTIQREISKLEFGVAQINSTLQVVN 124 (423)
Q Consensus 100 p~~~~EI~e~e~~l~q~ts~l~~~~ 124 (423)
..++.+|.+++..+..+..++..+.
T Consensus 97 ~~l~~~~~~l~~~~~~~~~~~~~l~ 121 (129)
T cd00890 97 ETLEKQIEKLEKQLEKLQDQITELQ 121 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555554444444444333
No 380
>KOG2260|consensus
Probab=39.12 E-value=2.2e+02 Score=30.08 Aligned_cols=42 Identities=24% Similarity=0.242 Sum_probs=35.2
Q ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhH
Q psy14534 17 LFLKTKHHLEKEQHVINHKMKTLQAINEEILQRISHLETSSQ 58 (423)
Q Consensus 17 ~~~~~~~~le~~~~~~~~~~~~l~~~~~~~~~r~~~~e~~~~ 58 (423)
..++++.....+|+.++..+...+..++++.++++.|+.+.-
T Consensus 37 ~r~Err~~~~q~~eei~k~~~~~~~ll~e~~e~l~~l~~~~~ 78 (372)
T KOG2260|consen 37 ARHERRAERKQEQEEIKKSKDMYSRLLEEVQEILSNLEVSSL 78 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccc
Confidence 455667777888999999999888889999999999998864
No 381
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=39.08 E-value=25 Score=38.20 Aligned_cols=51 Identities=10% Similarity=0.263 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhccc--cccc-hhhhhhhhHHH
Q psy14534 28 EQHVINHKMKTLQAINEEILQRISHLETSSQTNVKTLFNIT--KQIS-GVEHLHSSMME 83 (423)
Q Consensus 28 ~~~~~~~~~~~l~~~~~~~~~r~~~~e~~~~~l~~~~~n~s--~q~~-~~~k~~~s~~e 83 (423)
+++.|.+|+++||+.+..+.+||+++|. +...-+++ =+.. ++|-+|.++..
T Consensus 32 kie~L~kql~~Lk~q~~~l~~~v~k~e~-----~s~~d~lk~~~DfRt~~Dsi~yk~~~ 85 (489)
T PF11853_consen 32 KIEALKKQLEELKAQQDDLNDRVDKVEK-----HSAGDNLKFGGDFRTRYDSIQYKTVD 85 (489)
T ss_pred HHHHHHHHHHHHHHhhcccccccchhhH-----hhhcCcEEEeeEEEEEEecccccccc
Confidence 8888888899999888899999988776 22222222 3333 56777776554
No 382
>KOG3684|consensus
Probab=39.02 E-value=1.1e+02 Score=33.12 Aligned_cols=72 Identities=17% Similarity=0.318 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhccccccchhhhhhhhHHHHHHHHHHHHHHhhhcchhHHHHHHhhhh
Q psy14534 32 INHKMKTLQAINEEILQRISHLETSSQTNVKTLFNITKQISGVEHLHSSMMELLESIETIENKVDYNLPTIQREISKLEF 111 (423)
Q Consensus 32 ~~~~~~~l~~~~~~~~~r~~~~e~~~~~l~~~~~n~s~q~~~~~k~~~s~~el~e~ve~~~~~~d~~ip~~~~EI~e~e~ 111 (423)
.++|++=|+++.+ +|+.--+|+.|.+. .| .+-++-|+|.-|-|++.+|..-++.+++.|..+..-++.+.+
T Consensus 392 R~hQRkfL~AI~~-----fR~Vk~~qRkl~e~-~n---sl~d~aK~~~~myd~~~~l~~~q~~le~qI~~Le~kl~~l~~ 462 (489)
T KOG3684|consen 392 RKHQRKFLQAIHQ-----FRSVKWEQRKLSEQ-AN---SLVDLAKTQNDMYDLLQELHSRQEELEKQIDTLESKLEALTA 462 (489)
T ss_pred HHHHHHHHHHHHH-----HHHHHHHHHHHHhh-cc---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555554443 56666677777654 33 234556788888899999999988887766666555444444
Q ss_pred h
Q psy14534 112 G 112 (423)
Q Consensus 112 ~ 112 (423)
.
T Consensus 463 ~ 463 (489)
T KOG3684|consen 463 S 463 (489)
T ss_pred H
Confidence 3
No 383
>KOG0982|consensus
Probab=38.70 E-value=3.6e+02 Score=29.26 Aligned_cols=23 Identities=22% Similarity=0.235 Sum_probs=9.7
Q ss_pred HhhccccccchhhhhhhhHHHHH
Q psy14534 63 TLFNITKQISGVEHLHSSMMELL 85 (423)
Q Consensus 63 ~~~n~s~q~~~~~k~~~s~~el~ 85 (423)
.+--++-|++-..++|.-|+++|
T Consensus 340 ~LE~lrlql~~eq~l~~rm~d~L 362 (502)
T KOG0982|consen 340 LLEALRLQLICEQKLRVRMNDIL 362 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444443
No 384
>PHA02675 ORF104 fusion protein; Provisional
Probab=38.50 E-value=88 Score=26.34 Aligned_cols=28 Identities=25% Similarity=0.349 Sum_probs=24.5
Q ss_pred HHHHHhhhhhhhhhHHHHHHhhcccccc
Q psy14534 44 EEILQRISHLETSSQTNVKTLFNITKQI 71 (423)
Q Consensus 44 ~~~~~r~~~~e~~~~~l~~~~~n~s~q~ 71 (423)
.+..++|+.||.-..+|.+.+.++++.|
T Consensus 54 ~~~~~~L~RLE~H~ETLRk~Ml~L~KKI 81 (90)
T PHA02675 54 RETGARLDRLERHLETLREALLKLNTKI 81 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4678899999999999999999988776
No 385
>PLN02320 seryl-tRNA synthetase
Probab=38.29 E-value=1.4e+02 Score=32.68 Aligned_cols=33 Identities=15% Similarity=0.195 Sum_probs=19.9
Q ss_pred HHHHhhhhhhhhhhhhhhhhhhhhhhhHHHHHH
Q psy14534 104 REISKLEFGVAQINSTLQVVNETRESDANYLKS 136 (423)
Q Consensus 104 ~EI~e~e~~l~q~ts~l~~~~Ee~~n~s~~i~s 136 (423)
.+|-++....++...++..++.|.+.++++|..
T Consensus 93 d~l~~ld~~~r~~~~~~~~lr~ern~~sk~i~~ 125 (502)
T PLN02320 93 ELVLELYENMLALQKEVERLRAERNAVANKMKG 125 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355555556666666666666666666666654
No 386
>PF06320 GCN5L1: GCN5-like protein 1 (GCN5L1); InterPro: IPR009395 This family consists of several eukaryotic GCN5-like protein 1 (GCN5L1) sequences. The function of this family is unknown [,].
Probab=38.18 E-value=2.8e+02 Score=24.47 Aligned_cols=79 Identities=14% Similarity=0.193 Sum_probs=51.3
Q ss_pred HHHHhhhhhhhhhHHHHHHhhccccccchhhhhhhhHHHHHHHHHHHHHHhhhcchhHHHHHHhhhhhhhhhhhhhhhhh
Q psy14534 45 EILQRISHLETSSQTNVKTLFNITKQISGVEHLHSSMMELLESIETIENKVDYNLPTIQREISKLEFGVAQINSTLQVVN 124 (423)
Q Consensus 45 ~~~~r~~~~e~~~~~l~~~~~n~s~q~~~~~k~~~s~~el~e~ve~~~~~~d~~ip~~~~EI~e~e~~l~q~ts~l~~~~ 124 (423)
.+..|+..+=.-++.|-.+.-.+.+.. .++..++-+++..++.|..++ +-|.+|.+=.+..|.-+.-++..|..+.
T Consensus 37 ~ln~~v~~~~~Nqk~ie~e~k~L~~~~---~~l~kqt~qw~~~~~~~~~~L-KEiGDveNWa~~iE~Dl~~i~~~L~~v~ 112 (121)
T PF06320_consen 37 HLNSRVSEAYENQKKIEKEAKQLQRNT---AKLAKQTDQWLKLVDSFNDAL-KEIGDVENWAEMIERDLRVIEETLRYVY 112 (121)
T ss_pred HHHHhHHHHHHhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-HhhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455444334444444443333333 334445566777788888888 7888888888888888888888888777
Q ss_pred hhh
Q psy14534 125 ETR 127 (423)
Q Consensus 125 Ee~ 127 (423)
+..
T Consensus 113 ~~~ 115 (121)
T PF06320_consen 113 EGS 115 (121)
T ss_pred hhh
Confidence 654
No 387
>PF02346 Vac_Fusion: Chordopoxvirus fusion protein; InterPro: IPR003436 This is a family of viral fusion proteins from the Chordopoxvirinae. A 14kDa Vaccinia virus protein has been demonstrated to function as a viral fusion protein mediating cell fusion at endosmomal (low) pH []. The protein, found in the envelope fraction of the virions, is required for fusing the outermost of the two golgi-derived membranes enveloping the virus with the plasma membrane, and its subsequent release extracellularly. The N-terminal proximal region is essential for its fusion ability.; GO: 0019064 viral envelope fusion with host membrane, 0019031 viral envelope
Probab=38.18 E-value=1e+02 Score=24.07 Aligned_cols=50 Identities=20% Similarity=0.230 Sum_probs=34.7
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhcccccc
Q psy14534 22 KHHLEKEQHVINHKMKTLQAINEEILQRISHLETSSQTNVKTLFNITKQI 71 (423)
Q Consensus 22 ~~~le~~~~~~~~~~~~l~~~~~~~~~r~~~~e~~~~~l~~~~~n~s~q~ 71 (423)
++.++.....|.+.....-+--+...++|+.||.-..+|.+.+..+++-|
T Consensus 3 ~k~~~~rl~~Lek~~~~~~~~c~~~~~~i~RLE~H~ETlRk~mv~L~kKi 52 (57)
T PF02346_consen 3 IKDIEERLMVLEKDFRNAIKCCKENSEAIKRLEHHIETLRKYMVILAKKI 52 (57)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455555555555555545566788899999999999988888877655
No 388
>KOG2196|consensus
Probab=37.91 E-value=4.3e+02 Score=26.49 Aligned_cols=13 Identities=31% Similarity=0.588 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHh
Q psy14534 83 ELLESIETIENKV 95 (423)
Q Consensus 83 el~e~ve~~~~~~ 95 (423)
||...|-.||+++
T Consensus 145 ELE~~L~~lE~k~ 157 (254)
T KOG2196|consen 145 ELEDLLDPLETKL 157 (254)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444555554
No 389
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=37.81 E-value=3.3e+02 Score=29.27 Aligned_cols=64 Identities=19% Similarity=0.246 Sum_probs=33.0
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHhhhcchhH-HHHHHhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhhHH
Q psy14534 73 GVEHLHSSMMELLESIETIENKVDYNLPTI-QREISKLEFGVAQINSTLQVVNETRESDANYLKSTVSTLAT 143 (423)
Q Consensus 73 ~~~k~~~s~~el~e~ve~~~~~~d~~ip~~-~~EI~e~e~~l~q~ts~l~~~~Ee~~n~s~~i~s~~~sis~ 143 (423)
...+|..-.-.|+..|+-|+.-++....+| ++=..= .-..+..+..|+..+..+|+.|-.-+..
T Consensus 207 ~k~~L~~~sd~Ll~kVdDLQD~VE~LRkDV~~RgvRp-------~~~qle~v~kdi~~a~~~L~~m~~~i~~ 271 (424)
T PF03915_consen 207 GKKKLSEESDRLLTKVDDLQDLVEDLRKDVVQRGVRP-------SPKQLETVAKDISRASKELKKMKEYIKT 271 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555688888888888886555544 111111 2223344444444555555555544433
No 390
>KOG4514|consensus
Probab=37.74 E-value=3.1e+02 Score=26.43 Aligned_cols=24 Identities=21% Similarity=0.300 Sum_probs=17.4
Q ss_pred hhhhhhhhhHHHHHHhhccccccc
Q psy14534 49 RISHLETSSQTNVKTLFNITKQIS 72 (423)
Q Consensus 49 r~~~~e~~~~~l~~~~~n~s~q~~ 72 (423)
=|+.||.+.++|++.+-|+-+.+-
T Consensus 126 VL~DlE~~~~el~~~vD~llr~lg 149 (222)
T KOG4514|consen 126 VLSDLELEAQELASSVDNLLRNLG 149 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 357788888888877777766664
No 391
>KOG1656|consensus
Probab=37.72 E-value=2e+02 Score=28.12 Aligned_cols=19 Identities=32% Similarity=0.510 Sum_probs=15.5
Q ss_pred HHHHHhhHHHHHHHHHHHH
Q psy14534 18 FLKTKHHLEKEQHVINHKM 36 (423)
Q Consensus 18 ~~~~~~~le~~~~~~~~~~ 36 (423)
|++.+.=|+++|++|.++.
T Consensus 26 LrEteemL~KKqe~Le~ki 44 (221)
T KOG1656|consen 26 LRETEEMLEKKQEFLEKKI 44 (221)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5778888899999987775
No 392
>KOG4360|consensus
Probab=37.60 E-value=2.2e+02 Score=31.48 Aligned_cols=115 Identities=18% Similarity=0.148 Sum_probs=0.0
Q ss_pred chhhHHHHHhhHHHHHHHHHHHHHHHHHHHHH-------------HHHhhhhhhhhhHHHHHHhhccccccchhhhhhhh
Q psy14534 14 NGKLFLKTKHHLEKEQHVINHKMKTLQAINEE-------------ILQRISHLETSSQTNVKTLFNITKQISGVEHLHSS 80 (423)
Q Consensus 14 ~~~~~~~~~~~le~~~~~~~~~~~~l~~~~~~-------------~~~r~~~~e~~~~~l~~~~~n~s~q~~~~~k~~~s 80 (423)
|--.|.+.|+.++.+..+++-+-..| ..|. ..+++|..-+.-+.+.+++...+.+++...+=.++
T Consensus 160 ~~EaL~ekLk~~~een~~lr~k~~ll--k~Et~~~~~keq~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~sk 237 (596)
T KOG4360|consen 160 LLEALQEKLKPLEEENTQLRSKAMLL--KTETLTYEEKEQQLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSK 237 (596)
T ss_pred HHHHHHhhcCChHHHHHHHHHHHHHH--HhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HH---------------HHHHHHHHHHHHhhhcchhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhH
Q psy14534 81 MM---------------ELLESIETIENKVDYNLPTIQREISKLEFGVAQINSTLQVVNETRESDA 131 (423)
Q Consensus 81 ~~---------------el~e~ve~~~~~~d~~ip~~~~EI~e~e~~l~q~ts~l~~~~Ee~~n~s 131 (423)
+| |.=+-.+.|.... ..=-+++-|.+|+|..-+..-..+....||++++.
T Consensus 238 Llsql~d~qkk~k~~~~Ekeel~~~Lq~~~-da~~ql~aE~~EleDkyAE~m~~~~EaeeELk~lr 302 (596)
T KOG4360|consen 238 LLSQLVDLQKKIKYLRHEKEELDEHLQAYK-DAQRQLTAELEELEDKYAECMQMLHEAEEELKCLR 302 (596)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
No 393
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=37.58 E-value=2.7e+02 Score=26.55 Aligned_cols=28 Identities=14% Similarity=0.191 Sum_probs=16.5
Q ss_pred hhhhhhhhhhhhhhhhhhhhHHHHHHHH
Q psy14534 111 FGVAQINSTLQVVNETRESDANYLKSTV 138 (423)
Q Consensus 111 ~~l~q~ts~l~~~~Ee~~n~s~~i~s~~ 138 (423)
.++.+..+....+++++.++..+-.+.+
T Consensus 159 ~ei~~lks~~~~l~~~~~~~e~~F~~~~ 186 (190)
T PF05266_consen 159 KEISRLKSEAEALKEEIENAELEFQSVA 186 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555566666777766666655543
No 394
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=37.56 E-value=1.2e+02 Score=25.53 Aligned_cols=58 Identities=14% Similarity=0.097 Sum_probs=30.8
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHH---HHHhhhhhhhhhHHHHHHhhccccccchhhh
Q psy14534 19 LKTKHHLEKEQHVINHKMKTLQAINEE---ILQRISHLETSSQTNVKTLFNITKQISGVEH 76 (423)
Q Consensus 19 ~~~~~~le~~~~~~~~~~~~l~~~~~~---~~~r~~~~e~~~~~l~~~~~n~s~q~~~~~k 76 (423)
-.+|..+|.+.....+.+..++...+. =.+.=+.+|.+...|.+.+.+--+++..|.+
T Consensus 4 ~~eId~lEekl~~cr~~le~ve~rL~~~eLs~e~R~~lE~E~~~l~~~l~~~E~eL~~Lrk 64 (85)
T PF15188_consen 4 AKEIDGLEEKLAQCRRRLEAVESRLRRRELSPEARRSLEKELNELKEKLENNEKELKLLRK 64 (85)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 456777777777776666555443221 1122244555555555555555555554444
No 395
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=37.55 E-value=1.1e+02 Score=26.06 Aligned_cols=8 Identities=25% Similarity=0.613 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q psy14534 33 NHKMKTLQ 40 (423)
Q Consensus 33 ~~~~~~l~ 40 (423)
..++..++
T Consensus 12 ~~~i~~l~ 19 (129)
T cd00890 12 QQQLEALQ 19 (129)
T ss_pred HHHHHHHH
Confidence 33333333
No 396
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=37.44 E-value=1.4e+02 Score=31.71 Aligned_cols=33 Identities=9% Similarity=0.139 Sum_probs=21.4
Q ss_pred HHHHhhhhhhhhhhhhhhhhhhhhhhhHHHHHH
Q psy14534 104 REISKLEFGVAQINSTLQVVNETRESDANYLKS 136 (423)
Q Consensus 104 ~EI~e~e~~l~q~ts~l~~~~Ee~~n~s~~i~s 136 (423)
.+|-+++.+.+++..++..++.+.+.++++|..
T Consensus 30 d~i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~ 62 (418)
T TIGR00414 30 EKLIALDDERKKLLSEIEELQAKRNELSKQIGK 62 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666666666666666655
No 397
>KOG4603|consensus
Probab=37.40 E-value=1.1e+02 Score=29.12 Aligned_cols=23 Identities=26% Similarity=0.355 Sum_probs=15.6
Q ss_pred HHHHhhhcchhHHHHHHhhhhhhhh
Q psy14534 91 IENKVDYNLPTIQREISKLEFGVAQ 115 (423)
Q Consensus 91 ~~~~~d~~ip~~~~EI~e~e~~l~q 115 (423)
|.... ++|+++.||.++..+.+-
T Consensus 112 L~s~L--t~eemQe~i~~L~kev~~ 134 (201)
T KOG4603|consen 112 LSSAL--TTEEMQEEIQELKKEVAG 134 (201)
T ss_pred HHHhc--ChHHHHHHHHHHHHHHHH
Confidence 44444 788888888877766553
No 398
>PRK14011 prefoldin subunit alpha; Provisional
Probab=37.36 E-value=93 Score=28.43 Aligned_cols=29 Identities=7% Similarity=0.234 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhHHHHHHh
Q psy14534 36 MKTLQAINEEILQRISHLETSSQTNVKTL 64 (423)
Q Consensus 36 ~~~l~~~~~~~~~r~~~~e~~~~~l~~~~ 64 (423)
|..++...+.+...+..|...+.++.+.+
T Consensus 12 l~~~~~qie~L~~si~~L~~a~~e~~~~i 40 (144)
T PRK14011 12 LEVYNQQVQKLQEELSSIDMMKMELLKSI 40 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555566666666666655555443
No 399
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=36.94 E-value=2.8e+02 Score=25.77 Aligned_cols=45 Identities=16% Similarity=0.251 Sum_probs=32.7
Q ss_pred HHHHhhhhhhhhhHHHHHHhhccccccchhhhhhhhHHHHHHHHH
Q psy14534 45 EILQRISHLETSSQTNVKTLFNITKQISGVEHLHSSMMELLESIE 89 (423)
Q Consensus 45 ~~~~r~~~~e~~~~~l~~~~~n~s~q~~~~~k~~~s~~el~e~ve 89 (423)
.+..+|..|+.+.+.|...+.|.+-|++.+.....++..=+..+.
T Consensus 93 ~L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~e~~l~~e~~~l~ 137 (158)
T PF09744_consen 93 DLQSQVEQLEEENRQLELKLKNLSDQSSRLEEREAELKKEYNRLH 137 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHH
Confidence 466788899999999988888888888777766666543344333
No 400
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=36.80 E-value=2.4e+02 Score=27.02 Aligned_cols=28 Identities=11% Similarity=0.210 Sum_probs=14.4
Q ss_pred HhhhhhhhhhHHHHHHhhccccccchhh
Q psy14534 48 QRISHLETSSQTNVKTLFNITKQISGVE 75 (423)
Q Consensus 48 ~r~~~~e~~~~~l~~~~~n~s~q~~~~~ 75 (423)
.|=+..|.....+.+.++|+..++.++.
T Consensus 74 krKK~~E~ql~q~~~ql~nLEq~~~~iE 101 (191)
T PTZ00446 74 KRKKLYEQEIENILNNRLTLEDNMINLE 101 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555554433
No 401
>PRK02119 hypothetical protein; Provisional
Probab=36.56 E-value=2.3e+02 Score=22.89 Aligned_cols=21 Identities=19% Similarity=0.183 Sum_probs=15.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q psy14534 160 DANYLKSTVSTLATLQEKVEA 180 (423)
Q Consensus 160 Q~~~I~~l~~~v~~~~~ql~~ 180 (423)
|.+.|.+|+.+|..|++++..
T Consensus 21 QE~tie~LN~~v~~Qq~~id~ 41 (73)
T PRK02119 21 QENLLEELNQALIEQQFVIDK 41 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 466777788888888877653
No 402
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=36.55 E-value=2.2e+02 Score=26.95 Aligned_cols=74 Identities=19% Similarity=0.232 Sum_probs=0.0
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHH------HHHHHHHhhhhhhhhhHHHHHHhhccccccc-hhhhhhhhHHHHHHHHHH
Q psy14534 18 FLKTKHHLEKEQHVINHKMKTLQA------INEEILQRISHLETSSQTNVKTLFNITKQIS-GVEHLHSSMMELLESIET 90 (423)
Q Consensus 18 ~~~~~~~le~~~~~~~~~~~~l~~------~~~~~~~r~~~~e~~~~~l~~~~~n~s~q~~-~~~k~~~s~~el~e~ve~ 90 (423)
+.+++..++.+...+...+...++ ....+.+++..|+.+...|.+++...+.-.. .++++...+..+.+.++.
T Consensus 74 l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~~~~~~~~~~~~~anr 153 (188)
T PF03962_consen 74 LQKEIEELEKKIEELEEKIEEAKKGREESEEREELLEELEELKKELKELKKELEKYSENDPEKIEKLKEEIKIAKEAANR 153 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Q ss_pred H
Q psy14534 91 I 91 (423)
Q Consensus 91 ~ 91 (423)
.
T Consensus 154 w 154 (188)
T PF03962_consen 154 W 154 (188)
T ss_pred H
No 403
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=36.43 E-value=5.5e+02 Score=27.23 Aligned_cols=24 Identities=21% Similarity=0.256 Sum_probs=11.8
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHH
Q psy14534 18 FLKTKHHLEKEQHVINHKMKTLQA 41 (423)
Q Consensus 18 ~~~~~~~le~~~~~~~~~~~~l~~ 41 (423)
+..++.+++.....+..+...|++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~rL~a 118 (457)
T TIGR01000 95 EENQKQLLEQQLDNLKDQKKSLDT 118 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555544444433
No 404
>KOG3229|consensus
Probab=36.31 E-value=2.5e+02 Score=27.51 Aligned_cols=17 Identities=12% Similarity=0.192 Sum_probs=8.7
Q ss_pred HHHHHHhhccccccchh
Q psy14534 58 QTNVKTLFNITKQISGV 74 (423)
Q Consensus 58 ~~l~~~~~n~s~q~~~~ 74 (423)
+.|+++|.++-++++.+
T Consensus 61 ~iLAKEiv~srk~v~Rl 77 (227)
T KOG3229|consen 61 RILAKEIVQSRKAVKRL 77 (227)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555555555555443
No 405
>PRK02119 hypothetical protein; Provisional
Probab=36.10 E-value=91 Score=25.20 Aligned_cols=53 Identities=11% Similarity=0.179 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHhhhhhhhhhHHHHHHhhccccccchhhhhhhhHHHHHHHHHHHH
Q psy14534 37 KTLQAINEEILQRISHLETSSQTNVKTLFNITKQISGVEHLHSSMMELLESIETIE 92 (423)
Q Consensus 37 ~~l~~~~~~~~~r~~~~e~~~~~l~~~~~n~s~q~~~~~k~~~s~~el~e~ve~~~ 92 (423)
..++.+..++..||-+.|.+...|...++.-.++| +++...+-.|.+.+..++
T Consensus 5 ~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~i---d~L~~ql~~L~~rl~~~~ 57 (73)
T PRK02119 5 QNLENRIAELEMKIAFQENLLEELNQALIEQQFVI---DKMQVQLRYMANKLKDMQ 57 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhc
Confidence 34555566666777777777777766666655555 455555555555555544
No 406
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=36.00 E-value=1.4e+02 Score=23.14 Aligned_cols=46 Identities=20% Similarity=0.325 Sum_probs=21.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhh---hhhhHHHHHHhhcccc
Q psy14534 24 HLEKEQHVINHKMKTLQAINEEILQRISHL---ETSSQTNVKTLFNITK 69 (423)
Q Consensus 24 ~le~~~~~~~~~~~~l~~~~~~~~~r~~~~---e~~~~~l~~~~~n~s~ 69 (423)
++......+..+++.+++..+.+...|+.| ......+|.+-++.++
T Consensus 21 ~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~~AR~~lgm~~ 69 (80)
T PF04977_consen 21 QLNQEIAELQKEIEELKKENEELKEEIERLKNDPDYIEKVAREKLGMVK 69 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCcC
Confidence 344444444444555555555555555554 2223444444455443
No 407
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=35.67 E-value=2.5e+02 Score=32.33 Aligned_cols=23 Identities=22% Similarity=0.429 Sum_probs=12.0
Q ss_pred hhHHHHHHHHHHHHHHhhhcchh
Q psy14534 79 SSMMELLESIETIENKVDYNLPT 101 (423)
Q Consensus 79 ~s~~el~e~ve~~~~~~d~~ip~ 101 (423)
..+.+|+++++.....++.-.-+
T Consensus 516 ~~~~~li~~l~~~~~~~e~~~~~ 538 (782)
T PRK00409 516 EKLNELIASLEELERELEQKAEE 538 (782)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666666655555433333
No 408
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=35.61 E-value=3.6e+02 Score=24.94 Aligned_cols=97 Identities=18% Similarity=0.266 Sum_probs=0.0
Q ss_pred hHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHhhhhhhhhhHH-HHHHhhccccccc-hhhhhhhhHHHHHHHHHHHHH
Q psy14534 17 LFLKTKHHLEKEQHVINHK-MKTLQAINEEILQRISHLETSSQT-NVKTLFNITKQIS-GVEHLHSSMMELLESIETIEN 93 (423)
Q Consensus 17 ~~~~~~~~le~~~~~~~~~-~~~l~~~~~~~~~r~~~~e~~~~~-l~~~~~n~s~q~~-~~~k~~~s~~el~e~ve~~~~ 93 (423)
.++..+.+|-..+..+.+. .+.++...+.+...|..|+.+.+. +.+--+.+.-.+. ..-++..-.-.+-..+..+..
T Consensus 55 ~~~a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l~~~L~~ei~~l~a~~klD~n~eK~~~r~e~~~~~~ki~e~~~ 134 (177)
T PF07798_consen 55 LFKAAIAELRSELQNSRKSEFAELRSENEKLQREIEKLRQELREEINKLRAEVKLDLNLEKGRIREEQAKQELKIQELNN 134 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhhhcchhHHHHHHhhhhhh
Q psy14534 94 KVDYNLPTIQREISKLEFGV 113 (423)
Q Consensus 94 ~~d~~ip~~~~EI~e~e~~l 113 (423)
++|.-|.+++.+|....-.+
T Consensus 135 ki~~ei~~lr~~iE~~K~~~ 154 (177)
T PF07798_consen 135 KIDTEIANLRTEIESLKWDT 154 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHH
No 409
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=35.50 E-value=96 Score=29.21 Aligned_cols=13 Identities=31% Similarity=0.744 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHh
Q psy14534 83 ELLESIETIENKV 95 (423)
Q Consensus 83 el~e~ve~~~~~~ 95 (423)
|++..+..||.++
T Consensus 129 e~~~~l~~le~~~ 141 (175)
T PRK13182 129 EMLERLQKLEARL 141 (175)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 410
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=35.47 E-value=3.6e+02 Score=24.80 Aligned_cols=37 Identities=19% Similarity=0.232 Sum_probs=17.6
Q ss_pred hhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhHHHHHH
Q psy14534 100 PTIQREISKLEFGVAQINSTLQVVNETRESDANYLKS 136 (423)
Q Consensus 100 p~~~~EI~e~e~~l~q~ts~l~~~~Ee~~n~s~~i~s 136 (423)
..++.+|...+..+++.-..+...+.+...+......
T Consensus 94 ~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~ 130 (177)
T PF13870_consen 94 ERLKQELKDREEELAKLREELYRVKKERDKLRKQNKK 130 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555554444444444444333
No 411
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=35.31 E-value=3.1e+02 Score=24.14 Aligned_cols=66 Identities=14% Similarity=0.130 Sum_probs=32.8
Q ss_pred HHHHHhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhhHHHHHHHHH-HHHHHHHHhhHHHHHHHH
Q psy14534 103 QREISKLEFGVAQINSTLQVVNETRESDANYLKSTVSTLATLQEKVEA-NNIIMQALSDANYLKSTV 168 (423)
Q Consensus 103 ~~EI~e~e~~l~q~ts~l~~~~Ee~~n~s~~i~s~~~sis~lqek~~~-~~kv~~le~Q~~~I~~l~ 168 (423)
+.+|..=-..|=.-++....++..+..+...|.++..++.+|+.++-- .+++...-.++.+|..+.
T Consensus 50 ~~~v~~~~~~LL~q~~~~~~~~~~l~~v~~~v~~L~~s~~RL~~eV~~Py~~~~~~~~~L~rl~~t~ 116 (132)
T PF10392_consen 50 RSQVTSNHEDLLSQASSIEELESVLQAVRSSVESLQSSYERLRSEVIEPYEKIQKLTSQLERLHQTS 116 (132)
T ss_pred HHHHHhCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444445666666666666666666655533 333333334444444443
No 412
>PRK10698 phage shock protein PspA; Provisional
Probab=35.24 E-value=3.4e+02 Score=26.26 Aligned_cols=43 Identities=14% Similarity=0.204 Sum_probs=22.6
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHH
Q psy14534 19 LKTKHHLEKEQHVINHKMKTLQAINEEILQRISHLETSSQTNV 61 (423)
Q Consensus 19 ~~~~~~le~~~~~~~~~~~~l~~~~~~~~~r~~~~e~~~~~l~ 61 (423)
.+++..|+............|+.....+..+|......+..|.
T Consensus 98 ~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~ 140 (222)
T PRK10698 98 TDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALM 140 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555555555544444
No 413
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=35.09 E-value=4.4e+02 Score=25.79 Aligned_cols=30 Identities=20% Similarity=0.319 Sum_probs=19.2
Q ss_pred ccccccchhhhhhhhHHHHHHHHHHHHHHh
Q psy14534 66 NITKQISGVEHLHSSMMELLESIETIENKV 95 (423)
Q Consensus 66 n~s~q~~~~~k~~~s~~el~e~ve~~~~~~ 95 (423)
.+.+.|+..-.++-...++...++.++.++
T Consensus 46 ~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A 75 (225)
T COG1842 46 ALAQAIARQKQLERKLEEAQARAEKLEEKA 75 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555666666667777777777666
No 414
>PHA02414 hypothetical protein
Probab=34.90 E-value=2.1e+02 Score=24.83 Aligned_cols=17 Identities=29% Similarity=0.624 Sum_probs=14.1
Q ss_pred hhHHHHHHHHHHHHHHh
Q psy14534 79 SSMMELLESIETIENKV 95 (423)
Q Consensus 79 ~s~~el~e~ve~~~~~~ 95 (423)
-.+..|+..|+.|+.++
T Consensus 4 ~~in~Lv~~v~~ledKi 20 (111)
T PHA02414 4 KEINNLVSQVETLEDKI 20 (111)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 35678899999999988
No 415
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=34.83 E-value=3.1e+02 Score=31.57 Aligned_cols=7 Identities=43% Similarity=0.781 Sum_probs=2.7
Q ss_pred CCccCCc
Q psy14534 372 ASNYEGG 378 (423)
Q Consensus 372 A~~~~GG 378 (423)
|....||
T Consensus 756 a~~~~GG 762 (771)
T TIGR01069 756 APPNDGG 762 (771)
T ss_pred cCcccCC
Confidence 3333444
No 416
>PLN02678 seryl-tRNA synthetase
Probab=34.83 E-value=1.4e+02 Score=32.13 Aligned_cols=33 Identities=12% Similarity=0.022 Sum_probs=20.8
Q ss_pred HHHHhhhhhhhhhhhhhhhhhhhhhhhHHHHHH
Q psy14534 104 REISKLEFGVAQINSTLQVVNETRESDANYLKS 136 (423)
Q Consensus 104 ~EI~e~e~~l~q~ts~l~~~~Ee~~n~s~~i~s 136 (423)
.||-+++.+.+++..++..++.+.+.++++|..
T Consensus 33 d~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~ 65 (448)
T PLN02678 33 DEVIALDKEWRQRQFELDSLRKEFNKLNKEVAK 65 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666666666666666654
No 417
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=34.69 E-value=1.9e+02 Score=27.84 Aligned_cols=54 Identities=20% Similarity=0.182 Sum_probs=31.5
Q ss_pred HHHHHHHhhhhhhhhhHHHHHHhhcccc-----ccc---hhhhhhhhHHHHHHHHHHHHHHh
Q psy14534 42 INEEILQRISHLETSSQTNVKTLFNITK-----QIS---GVEHLHSSMMELLESIETIENKV 95 (423)
Q Consensus 42 ~~~~~~~r~~~~e~~~~~l~~~~~n~s~-----q~~---~~~k~~~s~~el~e~ve~~~~~~ 95 (423)
++..+..-+..+|.++..+.+++-.|.+ |+. .|..|...-.+++.++-.+|.+.
T Consensus 137 ~n~~Le~~~~~le~~l~~~k~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~~v~kn~eie~a~ 198 (221)
T PF05700_consen 137 HNEQLEAMLKRLEKELAKLKKEIEEVNRERKRRQEEAGEELRYLEQRWKELVSKNLEIEVAC 198 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777778888888888877777664 333 23334444445555544444443
No 418
>PF03310 Cauli_DNA-bind: Caulimovirus DNA-binding protein; InterPro: IPR004986 The gene III product (P15) of cauliflower mosaic virus (CaMV) is a DNA binding protein in which the DNA binding activity is located on its C-terminal part. A family of related proteins is expressed by other members of the Caulimoviridae.; GO: 0003677 DNA binding; PDB: 3F6N_A 3K4T_D.
Probab=34.67 E-value=1.5e+02 Score=26.52 Aligned_cols=29 Identities=14% Similarity=0.153 Sum_probs=20.6
Q ss_pred hhhhhhhhhhhhhhhhhhHHHHHHHHhhh
Q psy14534 113 VAQINSTLQVVNETRESDANYLKSTVSTL 141 (423)
Q Consensus 113 l~q~ts~l~~~~Ee~~n~s~~i~s~~~si 141 (423)
|++|.++++.+.++++++...|+++.+.+
T Consensus 1 l~~~~kEi~~l~~~lk~~~~~i~ailek~ 29 (121)
T PF03310_consen 1 LATIIKEISELIQELKKIESDIKAILEKL 29 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45667777777777777777777776554
No 419
>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=34.60 E-value=4.7e+02 Score=25.97 Aligned_cols=37 Identities=11% Similarity=0.067 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHh
Q psy14534 28 EQHVINHKMKTLQAINEEILQRISHLETSSQTNVKTL 64 (423)
Q Consensus 28 ~~~~~~~~~~~l~~~~~~~~~r~~~~e~~~~~l~~~~ 64 (423)
....+.+.+..++|+.+|+.+|...++.+.+.++...
T Consensus 59 y~d~l~~~l~~ieki~~Rv~kr~~~l~~d~~e~~~~f 95 (240)
T cd07667 59 YLDTFALKLGTIDRIAQRIIKEEIEYLVELREYGPVY 95 (240)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666677788888888888888888777766443
No 420
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=34.57 E-value=13 Score=42.95 Aligned_cols=160 Identities=14% Similarity=0.205 Sum_probs=0.0
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhccc-------cccchhhhhhhhHHHHHHHHHH
Q psy14534 18 FLKTKHHLEKEQHVINHKMKTLQAINEEILQRISHLETSSQTNVKTLFNIT-------KQISGVEHLHSSMMELLESIET 90 (423)
Q Consensus 18 ~~~~~~~le~~~~~~~~~~~~l~~~~~~~~~r~~~~e~~~~~l~~~~~n~s-------~q~~~~~k~~~s~~el~e~ve~ 90 (423)
.+...+.|+++|+.++..++++++....+..-+..+..+.+.+..++|.+. -++..+.+-+..+-.=++++..
T Consensus 368 ~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e~r~~~te~~~Lk~~lee~~e~~e~lere~k~L~~El~dl~~ 447 (859)
T PF01576_consen 368 AQAAAAELEKKQRKFDKQLAEWKAKVEELQAERDAAQREARELETELFKLKNELEELQEQLEELERENKQLQDELEDLTS 447 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccchh
Q ss_pred HHHHhhhcchhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHH-
Q psy14534 91 IENKVDYNLPTIQREISKLEFGVAQINSTLQVVNETRESDANYLKSTVSTLATLQEKVEANNIIMQALSDANYLKSTVS- 169 (423)
Q Consensus 91 ~~~~~d~~ip~~~~EI~e~e~~l~q~ts~l~~~~Ee~~n~s~~i~s~~~sis~lqek~~~~~kv~~le~Q~~~I~~l~~- 169 (423)
--....+++.++.+.++.+|.++......|......+.-.-..+-..-+.+ -+-+.++++.+..=++..+.++...+
T Consensus 448 q~~~~~k~v~eLek~kr~LE~e~~El~~~leE~E~~l~~~E~~~lRl~~el--~~~r~e~er~l~eKeeE~E~~Rr~~qr 525 (859)
T PF01576_consen 448 QLDDAGKSVHELEKAKRRLEQEKEELQEQLEEAEDALEAEEQKKLRLQVEL--QQLRQEIERELQEKEEEFEETRRNHQR 525 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhhhhHHHHHHHhhHH
Q ss_pred HHHHHHHHHH
Q psy14534 170 TLATLQEKVE 179 (423)
Q Consensus 170 ~v~~~~~ql~ 179 (423)
.+..+...|+
T Consensus 526 ~l~~le~~LE 535 (859)
T PF01576_consen 526 QLESLEAELE 535 (859)
T ss_dssp ----------
T ss_pred HHHHHHhHHH
No 421
>PRK00106 hypothetical protein; Provisional
Probab=34.57 E-value=5e+02 Score=28.82 Aligned_cols=43 Identities=12% Similarity=0.152 Sum_probs=19.0
Q ss_pred chhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhh
Q psy14534 99 LPTIQREISKLEFGVAQINSTLQVVNETRESDANYLKSTVSTL 141 (423)
Q Consensus 99 ip~~~~EI~e~e~~l~q~ts~l~~~~Ee~~n~s~~i~s~~~si 141 (423)
+.....+|.+.+..+.+.-..+...++++..+..+...+.+.+
T Consensus 120 LekrE~eLe~kekeLe~reeeLee~~~~~~~~~~~~~~~Le~~ 162 (535)
T PRK00106 120 LSSKEKTLESKEQSLTDKSKHIDEREEQVEKLEEQKKAELERV 162 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444444444433
No 422
>TIGR00996 Mtu_fam_mce virulence factor Mce family protein. Members of this paralogous family are found as six tandem homologous proteins in the same orientation per cassette, in four separate cassettes in Mycobacterium tuberculosis. The six members of each cassette represent six subfamilies. One subfamily includes the protein mce (mycobacterial cell entry), a virulence protein required for invasion of non-phagocytic cells.
Probab=34.47 E-value=4e+02 Score=26.16 Aligned_cols=66 Identities=8% Similarity=0.151 Sum_probs=34.6
Q ss_pred HHHHHHhhccccccchhhhhhhhHHHHHHHHHHHHHHhhhcchhHHHHHHhhhhhhhhhhhhhhhhhhhh
Q psy14534 58 QTNVKTLFNITKQISGVEHLHSSMMELLESIETIENKVDYNLPTIQREISKLEFGVAQINSTLQVVNETR 127 (423)
Q Consensus 58 ~~l~~~~~n~s~q~~~~~k~~~s~~el~e~ve~~~~~~d~~ip~~~~EI~e~e~~l~q~ts~l~~~~Ee~ 127 (423)
..+.+.+.|++.=...++.-...+-+++.++..+=..++.+-+++..=+. ++...++.+...+.++
T Consensus 167 ~~l~~~l~~l~~l~~~l~~~~~~i~~ll~~l~~l~~~l~~~~~~l~~~v~----~l~~~~~~l~~~~~~l 232 (291)
T TIGR00996 167 PQLRNLLDGLAQLTAALNARDGDIGALIDNLNRVLDVLADRSDQLDRLLD----NLATLTAQLADRDDAL 232 (291)
T ss_pred HHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhhhHHHHHHHH----HHHHHHHHHHhChHHH
Confidence 34445555554444455555666667777777666666555555444333 3444444444334433
No 423
>PF08181 DegQ: DegQ (SacQ) family; InterPro: IPR012554 This family consists of the DegQ (formerly sacQ) regulatory peptides. The DegQ family of peptides control the rates of synthesis of a class of both secreted and intracellular degradative enzymes in Bacillus subtilis. DegQ is 46 amino acids long and activates the synthesis of degradative enzymes. The expression of this peptide was shown to be subjected both to catabolite repression and DegS-DegU-mediated control. Thus allowing an increase in the rate of synthesis of degQ under conditions of nitrogen starvation [].
Probab=34.21 E-value=50 Score=24.18 Aligned_cols=36 Identities=28% Similarity=0.300 Sum_probs=28.8
Q ss_pred HHHHHHHhhhhhhhhhHHHHHHhhccccccchhhhh
Q psy14534 42 INEEILQRISHLETSSQTNVKTLFNITKQISGVEHL 77 (423)
Q Consensus 42 ~~~~~~~r~~~~e~~~~~l~~~~~n~s~q~~~~~k~ 77 (423)
..|++.+.+=.||++.++....+.|+.+.|..+||.
T Consensus 5 ~ieelkqll~rle~eirett~sl~ninksidq~dk~ 40 (46)
T PF08181_consen 5 KIEELKQLLWRLENEIRETTDSLRNINKSIDQYDKY 40 (46)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhch
Confidence 346667778889999999999999999888766653
No 424
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=34.10 E-value=1.2e+02 Score=27.88 Aligned_cols=75 Identities=15% Similarity=0.146 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhHHHHHHhhccccccchhhhhhhhHHHHHHHHHHHHHHhhhcchhHHHHHHhhh
Q psy14534 36 MKTLQAINEEILQRISHLETSSQTNVKTLFNITKQISGVEHLHSSMMELLESIETIENKVDYNLPTIQREISKLE 110 (423)
Q Consensus 36 ~~~l~~~~~~~~~r~~~~e~~~~~l~~~~~n~s~q~~~~~k~~~s~~el~e~ve~~~~~~d~~ip~~~~EI~e~e 110 (423)
|.+.-+..+..-.++..++.+...+...+.....||.+|.+..+-.-+|=..++.++.++++---+...+|....
T Consensus 8 m~~~gk~i~~~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~~~~~~e~~l~~~~ 82 (155)
T PF06810_consen 8 MAENGKDIEAPKAKVDKVKEERDNLKTQLKEADKQIKDLKKSAKDNEELKKQIEELQAKNKTAKEEYEAKLAQMK 82 (155)
T ss_pred HHHccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444566677777777777777777777777776666667777777777666544444444444433
No 425
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=34.10 E-value=2.2e+02 Score=26.13 Aligned_cols=35 Identities=23% Similarity=0.344 Sum_probs=14.9
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q psy14534 22 KHHLEKEQHVINHKMKTLQAINEEILQRISHLETS 56 (423)
Q Consensus 22 ~~~le~~~~~~~~~~~~l~~~~~~~~~r~~~~e~~ 56 (423)
+.+|.-....+..++..|+..+..+...+..+...
T Consensus 8 le~l~a~lq~l~~qie~L~~~i~~l~~~~~e~~~~ 42 (145)
T COG1730 8 LEELAAQLQILQSQIESLQAQIAALNAAISELQTA 42 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444333
No 426
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=34.06 E-value=4.4e+02 Score=29.02 Aligned_cols=51 Identities=18% Similarity=0.273 Sum_probs=31.4
Q ss_pred HHHHhhhhhhhhhHHHHHHhhc-cccccchhhhhhhhHHHHHHHHHHHHHHh
Q psy14534 45 EILQRISHLETSSQTNVKTLFN-ITKQISGVEHLHSSMMELLESIETIENKV 95 (423)
Q Consensus 45 ~~~~r~~~~e~~~~~l~~~~~n-~s~q~~~~~k~~~s~~el~e~ve~~~~~~ 95 (423)
-+..+|..|+....+++.++.+ +...-..+.....+..+|.+++..+.+.+
T Consensus 11 dl~~~I~~L~~~i~~~k~eV~~~I~~~y~df~~~~~~~~~L~~~~~~l~~eI 62 (593)
T PF06248_consen 11 DLRKSISRLSRRIEELKEEVHSMINKKYSDFSPSLQSAKDLIERSKSLAREI 62 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3555666666666666666665 44444455556666666666666666655
No 427
>PF08687 ASD2: Apx/Shroom domain ASD2; InterPro: IPR014799 Cell shape changes require the coordination of actin and microtubule cytoskeletons. The Shroom family is a small group of related proteins that are defined by sequence similarity and in most cases by some link to the actin cytoskeleton. The Shroom (Shrm) protein family is found only in animals. Proteins of this family are predicted to be utilised in multiple morphogenic and developmental processes across animal phyla to regulate cells shape or intracellular architecture in an actin and myosin-dependent manner []. While the founding member of the Shrm family is Shrm1 (formerly Apx), it appears that this protein is found only in Xenopus []. In mice and humans, the Shrm family of proteins consists of: Shrm2 (formerly Apxl), a protein involved in the morphogenesis, maintenance, and/or function of vascular endothelial cells. Shrm3 (formerly Shroom), a protein necessary for neural tube closure in vertebrate development as deficiency in Shrm results in spina bifida. Shrm3 is also conserved in some invertebrates, as orthologues can be found in sea urchins. Shrm4, a regulator of cyto-skeletal architecture that may play an important role in vertebrate development. It is implicated in X-linked mental retardation in humans. This protein family is based on the conservation of a specific arrangement of an N-terminal PDZ domain, a centrally positioned sequence motif termed ASD1 (Apx/Shrm Domain 1) and a C-terminal motif termed ASD2 [, , ]. Shrm2 and Shrm3 contain all three domains, while Shrm4 contains the PDZ and ASD2 domains, but lacks a discernible ASD1 element. To date, the ASD1 and ASD2 elements have only been found in Shrm-related proteins and do not appear in combination with other conserved domains. ASD1 is required for targeting actin, while ASD2 is capable of eliciting an actomyosin based constriction event [, ]. ASD2 is the most highly conserved sequence element shared by Shrm1, Shrm2, Shrm3, and Shrm4. It possesses a well conserved series of leucine residues that exhibit spacing consistent with that of a leucine zipper motif []. Shroom2 is both necessary and sufficient to govern the localization of pigment granules at the apical surface of epithelial cells. Shroom2 is a central regulator of RPE pigmentation. Despite their diverse biological roles, Shroom family proteins share a common activity. Since the locus encoding human SHROOM2 lies within the critical region for two distinct forms of ocular albinism, it is possible that SHROOM2 mutations may contribute to human visual system disorders [].; GO: 0000902 cell morphogenesis, 0005737 cytoplasm; PDB: 3THF_B.
Probab=34.02 E-value=5.1e+02 Score=26.16 Aligned_cols=61 Identities=15% Similarity=0.174 Sum_probs=31.1
Q ss_pred HHHHHhhhhhhhhhhhhh-----hhhhhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHH
Q psy14534 103 QREISKLEFGVAQINSTL-----QVVNETRESDANYLKSTVSTLATLQEKVEANNIIMQALSDANYLK 165 (423)
Q Consensus 103 ~~EI~e~e~~l~q~ts~l-----~~~~Ee~~n~s~~i~s~~~sis~lqek~~~~~kv~~le~Q~~~I~ 165 (423)
..+-+++.+++.+.-..+ +.+++|.---....-.|-..+ |-+..++..||.--|+|+..|.
T Consensus 196 ~edAk~LKe~~drRe~~v~~iL~~~L~~eq~~dy~~fv~mKa~L--l~eqreLddkiklgeEQL~~L~ 261 (264)
T PF08687_consen 196 LEDAKELKENLDRRERVVSEILARYLSEEQLADYRHFVKMKAAL--LIEQRELDDKIKLGEEQLEALR 261 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH--HHHHHhHHHHHHhhHHHHHHHH
Confidence 344455555555443333 334444433333333444445 6667777777766677766654
No 428
>PF03882 KicB: KicB killing factor; InterPro: IPR005582 This family contains MukF, which are proteins involved in chromosome condensation, segregation and cell cycle progression. MukE (IPR007385 from INTERPRO) along with MukF interact with MukB (IPR007406 from INTERPRO) in vivo forming a complex, which is required for chromosome condensation and segregation in Escherichia coli []. The Muk complex appears to be similar to the SMC-ScpA-ScpB complex in other prokaryotes where MukB is the homologue of SMC []. ScpA (IPR003768 from INTERPRO) and ScpB (IPR005234 from INTERPRO) have little sequence similarity to MukE or MukF, though they are predicted to be structurally similar, being predominantly alpha-helical with coiled coil regions. ; GO: 0005509 calcium ion binding, 0006260 DNA replication, 0007059 chromosome segregation, 0005737 cytoplasm; PDB: 1T98_B 3RPU_X 3EUH_B 3EUK_J 3EUJ_B.
Probab=33.98 E-value=2.6e+02 Score=30.05 Aligned_cols=61 Identities=25% Similarity=0.375 Sum_probs=41.6
Q ss_pred hhhhHHHHHHHHHHHHHHhhhcchhHHHHHHhh------------hhhhhhhhhhhhhhhhhhhhhHHHHHHH
Q psy14534 77 LHSSMMELLESIETIENKVDYNLPTIQREISKL------------EFGVAQINSTLQVVNETRESDANYLKST 137 (423)
Q Consensus 77 ~~~s~~el~e~ve~~~~~~d~~ip~~~~EI~e~------------e~~l~q~ts~l~~~~Ee~~n~s~~i~s~ 137 (423)
|+=|+-|||..|..-++.+|.+--.+|.||..+ |.-|..|+.+|..+++-+.+..-.+++.
T Consensus 160 LkySVaeifd~Idl~QR~MDeqQ~~vk~eIA~LL~qdW~~AI~~Ce~LL~EtsgtLRELqdtL~aagd~lqa~ 232 (440)
T PF03882_consen 160 LKYSVAEIFDSIDLNQRAMDEQQQSVKEEIAALLNQDWRAAIQSCEQLLDETSGTLRELQDTLEAAGDKLQAQ 232 (440)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHH
Confidence 566888999999999999999999999998765 3333444444444444444444444333
No 429
>KOG4571|consensus
Probab=33.77 E-value=1.5e+02 Score=30.22 Aligned_cols=36 Identities=19% Similarity=0.256 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhh
Q psy14534 30 HVINHKMKTLQAINEEILQRISHLETSSQTNVKTLF 65 (423)
Q Consensus 30 ~~~~~~~~~l~~~~~~~~~r~~~~e~~~~~l~~~~~ 65 (423)
+.+.-++..|++.++++-+|+.+||.|.+.|+..|-
T Consensus 251 E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~ 286 (294)
T KOG4571|consen 251 EALLGELEGLEKRNEELKDQASELEREIRYLKQLIL 286 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444677888899999999999999988886653
No 430
>PRK05260 condesin subunit F; Provisional
Probab=33.65 E-value=2.7e+02 Score=29.96 Aligned_cols=62 Identities=23% Similarity=0.409 Sum_probs=44.1
Q ss_pred hhhhHHHHHHHHHHHHHHhhhcchhHHHHHHhh------------hhhhhhhhhhhhhhhhhhhhhHHHHHHHH
Q psy14534 77 LHSSMMELLESIETIENKVDYNLPTIQREISKL------------EFGVAQINSTLQVVNETRESDANYLKSTV 138 (423)
Q Consensus 77 ~~~s~~el~e~ve~~~~~~d~~ip~~~~EI~e~------------e~~l~q~ts~l~~~~Ee~~n~s~~i~s~~ 138 (423)
|+=|+-|||+.|..-++.+|.+--++|.||.++ |.-|..|+.+|..+++-+....-.+++..
T Consensus 160 LkySVaeifd~Idl~QR~mDeqQ~~vk~eIA~LL~qdW~~AI~~Ce~LLdEtsgtLRELqdtL~aagD~lqaqL 233 (440)
T PRK05260 160 LKYSVAEIFDSIDLTQRLMDEQQQQVKDDIAQLLNKDWRAAISSCELLLSETSGTLRELQDTLEAAGDKLQANL 233 (440)
T ss_pred CcCcHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHH
Confidence 456788999999999999999999999999876 44444555555555555554444444433
No 431
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=33.59 E-value=5.9e+02 Score=26.82 Aligned_cols=44 Identities=7% Similarity=0.012 Sum_probs=24.2
Q ss_pred cchhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhh
Q psy14534 98 NLPTIQREISKLEFGVAQINSTLQVVNETRESDANYLKSTVSTL 141 (423)
Q Consensus 98 ~ip~~~~EI~e~e~~l~q~ts~l~~~~Ee~~n~s~~i~s~~~si 141 (423)
++-+=.+=|.+-..-+.++-++++-+.=|++|+-+--.++.+++
T Consensus 188 tf~eq~~ml~kRQ~yI~~LEsKVqDLm~EirnLLQle~~~~e~~ 231 (401)
T PF06785_consen 188 TFVEQHSMLDKRQAYIGKLESKVQDLMYEIRNLLQLESDMKESM 231 (401)
T ss_pred ccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcC
Confidence 44444555555555555555666666666665554444555544
No 432
>PF06148 COG2: COG (conserved oligomeric Golgi) complex component, COG2; InterPro: IPR024602 This entry represents the uncharacterised N-terminal domain of subunit 2 of the COG complex. The COG complex comprises eight proteins COG1-8 and plays critical roles in Golgi structure and function [].; PDB: 2JQQ_A.
Probab=33.46 E-value=31 Score=30.41 Aligned_cols=15 Identities=7% Similarity=-0.068 Sum_probs=0.0
Q ss_pred HHhhhhhhhhhHHHH
Q psy14534 47 LQRISHLETSSQTNV 61 (423)
Q Consensus 47 ~~r~~~~e~~~~~l~ 61 (423)
....+.|..+...|.
T Consensus 36 ~~~~~~L~~~Li~lI 50 (133)
T PF06148_consen 36 RSYSKELKNELIELI 50 (133)
T ss_dssp ---------------
T ss_pred HHHHHHHHHHHHHHH
Confidence 333344444444444
No 433
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=33.12 E-value=4.8e+02 Score=25.70 Aligned_cols=124 Identities=17% Similarity=0.162 Sum_probs=0.0
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhccccccchhhhhhhhHHHHHHHHHHHHHHhhh
Q psy14534 18 FLKTKHHLEKEQHVINHKMKTLQAINEEILQRISHLETSSQTNVKTLFNITKQISGVEHLHSSMMELLESIETIENKVDY 97 (423)
Q Consensus 18 ~~~~~~~le~~~~~~~~~~~~l~~~~~~~~~r~~~~e~~~~~l~~~~~n~s~q~~~~~k~~~s~~el~e~ve~~~~~~d~ 97 (423)
.......|+..+..+..++...+....+-.+++..|+...+.+..+-.-+.+...-+......+..--..-..=-.....
T Consensus 3 aEr~k~Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~ 82 (246)
T PF00769_consen 3 AEREKQELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQ 82 (246)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred cchhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhh
Q psy14534 98 NLPTIQREISKLEFGVAQINSTLQVVNETRESDANYLKSTVSTL 141 (423)
Q Consensus 98 ~ip~~~~EI~e~e~~l~q~ts~l~~~~Ee~~n~s~~i~s~~~si 141 (423)
-+.++..+|..++.+......+..-+++++..+..........+
T Consensus 83 e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~ak~~L 126 (246)
T PF00769_consen 83 ELREAEAEIARLEEESERKEEEAEELQEELEEAREDEEEAKEEL 126 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 434
>PRK05683 flgK flagellar hook-associated protein FlgK; Validated
Probab=33.00 E-value=3.2e+02 Score=31.03 Aligned_cols=24 Identities=0% Similarity=-0.219 Sum_probs=13.1
Q ss_pred ccchhhHHHHHhhHHHHHHHHHHH
Q psy14534 12 YRNGKLFLKTKHHLEKEQHVINHK 35 (423)
Q Consensus 12 ~r~~~~~~~~~~~le~~~~~~~~~ 35 (423)
+-+..|+..|+..-.........+
T Consensus 64 R~~D~fl~~q~r~~~s~~~~~~~~ 87 (676)
T PRK05683 64 RIYNSFLDTQLRTATSLNSDASAY 87 (676)
T ss_pred EhHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567777776555444443333
No 435
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=32.93 E-value=2.8e+02 Score=28.37 Aligned_cols=23 Identities=4% Similarity=0.079 Sum_probs=9.6
Q ss_pred HHHHHhhccccccchhhhhhhhH
Q psy14534 59 TNVKTLFNITKQISGVEHLHSSM 81 (423)
Q Consensus 59 ~l~~~~~n~s~q~~~~~k~~~s~ 81 (423)
.|..++..+.-....+++....+
T Consensus 64 ~LkREnq~l~e~c~~lek~rqKl 86 (307)
T PF10481_consen 64 ALKRENQSLMESCENLEKTRQKL 86 (307)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHh
Confidence 33344444444444444444443
No 436
>PF04129 Vps52: Vps52 / Sac2 family ; InterPro: IPR007258 Vps52 complexes with Vps53 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=32.60 E-value=77 Score=34.42 Aligned_cols=68 Identities=22% Similarity=0.337 Sum_probs=53.8
Q ss_pred hhhhhhhhH---HHHHHHHHHHHHHhhhcchhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHhh
Q psy14534 73 GVEHLHSSM---MELLESIETIENKVDYNLPTIQREISKLEFGVAQINSTLQVVNETRESDANYLKSTVST 140 (423)
Q Consensus 73 ~~~k~~~s~---~el~e~ve~~~~~~d~~ip~~~~EI~e~e~~l~q~ts~l~~~~Ee~~n~s~~i~s~~~s 140 (423)
.+-.+|.++ -.+|++||..=..|...|..+..||..+++.-...+..|..-+.-.+.++.-|..++.+
T Consensus 15 ~~~~Lh~~i~~cd~~L~~le~~L~~Fq~~L~~iS~eI~~LQ~~S~~l~~~L~Nrk~~~~~L~~~i~~i~ip 85 (508)
T PF04129_consen 15 NFADLHNQIQECDSILESLEEMLSNFQNDLGSISSEIRSLQERSSSLNVKLKNRKAVEEKLSPFIDDIVIP 85 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHcCC
Confidence 445566666 37888888888899999999999999999999999988887777667777777766653
No 437
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=32.58 E-value=4.3e+02 Score=29.22 Aligned_cols=11 Identities=27% Similarity=0.202 Sum_probs=4.9
Q ss_pred HHHHHHHhhhH
Q psy14534 132 NYLKSTVSTLA 142 (423)
Q Consensus 132 ~~i~s~~~sis 142 (423)
.+|+.|.+-|.
T Consensus 487 ~QLs~MSEHLa 497 (518)
T PF10212_consen 487 EQLSMMSEHLA 497 (518)
T ss_pred HHHHHHHHHHH
Confidence 34444444443
No 438
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=32.48 E-value=4.6e+02 Score=25.23 Aligned_cols=22 Identities=23% Similarity=0.326 Sum_probs=11.1
Q ss_pred HHHHHhhHHHHHHHHHHHHHHH
Q psy14534 18 FLKTKHHLEKEQHVINHKMKTL 39 (423)
Q Consensus 18 ~~~~~~~le~~~~~~~~~~~~l 39 (423)
|.+++.+.++.+..+..+|..+
T Consensus 52 Lq~qLlq~~k~~~~l~~eLq~l 73 (206)
T PF14988_consen 52 LQDQLLQKEKEQAKLQQELQAL 73 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555555555555555444
No 439
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=32.35 E-value=85 Score=31.18 Aligned_cols=51 Identities=20% Similarity=0.365 Sum_probs=24.8
Q ss_pred HHHHHHHHHHhhhhhhhhhHHHHHHhhccccccchhhhhhhhHHHHHHHHHHHH
Q psy14534 39 LQAINEEILQRISHLETSSQTNVKTLFNITKQISGVEHLHSSMMELLESIETIE 92 (423)
Q Consensus 39 l~~~~~~~~~r~~~~e~~~~~l~~~~~n~s~q~~~~~k~~~s~~el~e~ve~~~ 92 (423)
+.++..|.-.|+..||.+.+.+..++.-+.++| ++|+.--+.|+|+|.=++
T Consensus 84 VtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev---~~L~~DN~kLYEKiRylq 134 (248)
T PF08172_consen 84 VTSQRDRFRQRNAELEEELRKQQQTISSLRREV---ESLRADNVKLYEKIRYLQ 134 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHh
Confidence 333444444455555555554444444444443 334444455666665554
No 440
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=32.34 E-value=62 Score=26.60 Aligned_cols=43 Identities=21% Similarity=0.293 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHhhhcchhHHHHHHhhhhhhhhhhhhhhhhhhh
Q psy14534 83 ELLESIETIENKVDYNLPTIQREISKLEFGVAQINSTLQVVNET 126 (423)
Q Consensus 83 el~e~ve~~~~~~d~~ip~~~~EI~e~e~~l~q~ts~l~~~~Ee 126 (423)
.....|+.+.. +++++.+-..||..+|+.++.....|+-+++.
T Consensus 39 ~ar~~i~~lpg-i~~s~eeq~~~i~~Le~~i~~k~~~L~~~~~~ 81 (83)
T PF07544_consen 39 KARAAIRELPG-IDRSVEEQEEEIEELEEQIRKKREVLQKFKER 81 (83)
T ss_pred HHHHHHHhCCC-ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444 66666777777777777777777776655543
No 441
>PF05064 Nsp1_C: Nsp1-like C-terminal region; InterPro: IPR007758 The NSP1-like protein appears to be an essential component of the nuclear pore complex, for example preribosome nuclear export requires the Nup82p-Nup159p-Nsp1p complex. The C-terminal of Nsp1 is involved in binding Nup82 [], probably via coiled-coil formation [, ]. The family is related to the rotavirus nonstructural protein NSP1 which is the least conserved protein in the rotavirus genome. Its function in the replication process is not fully understood.; GO: 0017056 structural constituent of nuclear pore, 0005643 nuclear pore; PDB: 3T97_C.
Probab=32.20 E-value=1.3e+02 Score=26.18 Aligned_cols=42 Identities=17% Similarity=0.271 Sum_probs=19.1
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHH
Q psy14534 19 LKTKHHLEKEQHVINHKMKTLQAINEEILQRISHLETSSQTN 60 (423)
Q Consensus 19 ~~~~~~le~~~~~~~~~~~~l~~~~~~~~~r~~~~e~~~~~l 60 (423)
..++..++..|..+++.|+.++.+..++++-|..+|.....+
T Consensus 63 ~~~v~~~~~~Q~~ld~~L~~ie~qQ~eLe~~L~~lE~~~~~l 104 (116)
T PF05064_consen 63 YSEVQKAESEQKRLDQELDFIEAQQKELEELLDPLEKQVEKL 104 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCTT---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555444444555554444444433
No 442
>KOG1655|consensus
Probab=32.12 E-value=4.6e+02 Score=25.58 Aligned_cols=86 Identities=20% Similarity=0.264 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHhhhcchhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Q psy14534 80 SMMELLESIETIENKVDYNLPTIQREISKLEFGVAQINSTLQVVNETRESDANYLKSTVSTLATLQEKVEANNIIMQALS 159 (423)
Q Consensus 80 s~~el~e~ve~~~~~~d~~ip~~~~EI~e~e~~l~q~ts~l~~~~Ee~~n~s~~i~s~~~sis~lqek~~~~~kv~~le~ 159 (423)
|+.+-+.+|..-...+++-|+.+--||.+..+.++++ --......|+.++-.| |..|.-.......+-+
T Consensus 16 sL~dai~~v~~r~dSve~KIskLDaeL~k~~~Qi~k~---------R~gpaq~~~KqrAlrV--LkQKK~yE~q~d~L~~ 84 (218)
T KOG1655|consen 16 SLQDAIDSVNKRSDSVEKKISKLDAELCKYKDQIKKT---------RPGPAQNALKQRALRV--LKQKKMYENQKDSLDQ 84 (218)
T ss_pred hHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhc---------CCCcchhHHHHHHHHH--HHHHHHHHHHHHHHHH
Q ss_pred h----------HHHHHHHHHHHHHHHH
Q psy14534 160 D----------ANYLKSTVSTLATLQE 176 (423)
Q Consensus 160 Q----------~~~I~~l~~~v~~~~~ 176 (423)
| .+.|+.+..||+.+..
T Consensus 85 QsfNMeQa~~t~e~LKdtq~Tv~AmK~ 111 (218)
T KOG1655|consen 85 QSFNMEQANFTAESLKDTQATVAAMKD 111 (218)
T ss_pred hcccHHHHHHHHHHHHHHHHHHHHHHH
No 443
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=32.12 E-value=2.8e+02 Score=22.56 Aligned_cols=24 Identities=13% Similarity=0.347 Sum_probs=11.7
Q ss_pred chhhhhhhhHHHHHHHHHHHHHHh
Q psy14534 72 SGVEHLHSSMMELLESIETIENKV 95 (423)
Q Consensus 72 ~~~~k~~~s~~el~e~ve~~~~~~ 95 (423)
..+..+..-|..|-+.+..++.++
T Consensus 64 ~KL~~ikkrm~~l~~~l~~lk~R~ 87 (92)
T PF14712_consen 64 KKLVNIKKRMSNLHERLQKLKKRA 87 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455555555555544
No 444
>KOG3390|consensus
Probab=32.12 E-value=3.5e+02 Score=23.74 Aligned_cols=67 Identities=10% Similarity=0.258 Sum_probs=49.8
Q ss_pred hHHHHHHhhccccccchhhhhhhhHHHHHHHHHHHHHHhhhcchhHHHHHHhhhhhhhhhhhhhhhhhhhh
Q psy14534 57 SQTNVKTLFNITKQISGVEHLHSSMMELLESIETIENKVDYNLPTIQREISKLEFGVAQINSTLQVVNETR 127 (423)
Q Consensus 57 ~~~l~~~~~n~s~q~~~~~k~~~s~~el~e~ve~~~~~~d~~ip~~~~EI~e~e~~l~q~ts~l~~~~Ee~ 127 (423)
|++|--++-|+.-+.+-|-|.-++-+-+-+ .+-.++ +-|.++.+=.+-.|+-.+.+|+.|..+.|+.
T Consensus 53 qkrld~E~k~l~~~~A~faKQT~QWl~vte---~~N~Al-KEIGDvENW~ktiE~Dmk~It~alr~~ye~q 119 (120)
T KOG3390|consen 53 QKRLDSEIKNLAITVAKFAKQTDQWLAVTE---AVNSAL-KEIGDVENWMKTIEFDMKKITAALRNIYEDQ 119 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHH---HHHHHH-HHHhhHHHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 677777777777777777777666665544 444555 7778888888999999999999988877753
No 445
>COG4980 GvpP Gas vesicle protein [General function prediction only]
Probab=32.03 E-value=2.3e+02 Score=25.10 Aligned_cols=42 Identities=17% Similarity=0.281 Sum_probs=28.9
Q ss_pred hhhhHHHHHHHHHHHHHHhhhcchhHHHHHHhhhhhhhhhhh
Q psy14534 77 LHSSMMELLESIETIENKVDYNLPTIQREISKLEFGVAQINS 118 (423)
Q Consensus 77 ~~~s~~el~e~ve~~~~~~d~~ip~~~~EI~e~e~~l~q~ts 118 (423)
+.++--||-++|..+.++.+-.+..+++||..+++.....+-
T Consensus 70 ~~~~~~~ik~~v~~~~e~~q~~~~~l~~ei~~~~~~~sd~~k 111 (115)
T COG4980 70 LKDQGGEIKESVKKWKEDIQPEIERLKSEIEDLQEAISDETK 111 (115)
T ss_pred HHHhhHHHHHHHHHhHhhcchhHHHHHHHHHHHHHHHHHHHh
Confidence 455555777777777777776777778888777766555443
No 446
>PRK02793 phi X174 lysis protein; Provisional
Probab=31.97 E-value=1.1e+02 Score=24.59 Aligned_cols=52 Identities=17% Similarity=0.174 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhhhhhhhhhHHHHHHhhccccccchhhhhhhhHHHHHHHHHHHHH
Q psy14534 39 LQAINEEILQRISHLETSSQTNVKTLFNITKQISGVEHLHSSMMELLESIETIEN 93 (423)
Q Consensus 39 l~~~~~~~~~r~~~~e~~~~~l~~~~~n~s~q~~~~~k~~~s~~el~e~ve~~~~ 93 (423)
++.+..+++.||.+.|.+...|.+.++.-.++| +++...+-.|.+.+..++.
T Consensus 6 ~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I---~~L~~~l~~L~~rl~~~~~ 57 (72)
T PRK02793 6 LEARLAELESRLAFQEITIEELNVTVTAHEMEM---AKLRDHLRLLTEKLKASQP 57 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhcc
Confidence 444556666677777777777766666666666 4444555555555555443
No 447
>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce
Probab=31.96 E-value=4.3e+02 Score=25.97 Aligned_cols=27 Identities=15% Similarity=0.226 Sum_probs=17.1
Q ss_pred HHHHHhhhhhhhhhhhhhhhhhhhhhh
Q psy14534 103 QREISKLEFGVAQINSTLQVVNETRES 129 (423)
Q Consensus 103 ~~EI~e~e~~l~q~ts~l~~~~Ee~~n 129 (423)
..|+.|.+..+.+.+..+....++-.+
T Consensus 167 ~~eleK~~~k~~k~~~~~~~~~~~Y~~ 193 (258)
T cd07655 167 PDQVKKLQDKVEKCKQEVSKTKDKYEK 193 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777777776666555555433
No 448
>KOG4603|consensus
Probab=31.82 E-value=1.5e+02 Score=28.26 Aligned_cols=64 Identities=14% Similarity=0.251 Sum_probs=32.0
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHhhhcchhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhhHHHH
Q psy14534 73 GVEHLHSSMMELLESIETIENKVDYNLPTIQREISKLEFGVAQINSTLQVVNETRESDANYLKSTVSTLATLQ 145 (423)
Q Consensus 73 ~~~k~~~s~~el~e~ve~~~~~~d~~ip~~~~EI~e~e~~l~q~ts~l~~~~Ee~~n~s~~i~s~~~sis~lq 145 (423)
.+..+++.+..|-+.|..+... .+.+-.||+++.-.| ++-.++|++..+..++..+.+.+.++.
T Consensus 80 el~~ld~~i~~l~ek~q~l~~t----~s~veaEik~L~s~L-----t~eemQe~i~~L~kev~~~~erl~~~k 143 (201)
T KOG4603|consen 80 ELQVLDGKIVALTEKVQSLQQT----CSYVEAEIKELSSAL-----TTEEMQEEIQELKKEVAGYRERLKNIK 143 (201)
T ss_pred HHHHHhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhc-----ChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555554432 355555555554333 223445555555555555555544433
No 449
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=31.67 E-value=4.3e+02 Score=24.66 Aligned_cols=10 Identities=40% Similarity=0.664 Sum_probs=4.6
Q ss_pred hhhcchhHHH
Q psy14534 95 VDYNLPTIQR 104 (423)
Q Consensus 95 ~d~~ip~~~~ 104 (423)
+++-+|...+
T Consensus 131 l~~yLp~~~~ 140 (199)
T PF10112_consen 131 LYYYLPTAVK 140 (199)
T ss_pred HHHHhhHHHH
Confidence 3444555443
No 450
>KOG4637|consensus
Probab=31.61 E-value=4e+02 Score=28.43 Aligned_cols=13 Identities=15% Similarity=0.046 Sum_probs=9.4
Q ss_pred hhHHHHHHHHhhh
Q psy14534 129 SDANYLKSTVSTL 141 (423)
Q Consensus 129 n~s~~i~s~~~si 141 (423)
.+.+.|+++...+
T Consensus 266 ~l~k~~nslkp~l 278 (464)
T KOG4637|consen 266 ELDKAMNSLKPDL 278 (464)
T ss_pred HHHHHHhhcCchH
Confidence 4567777777777
No 451
>PLN02939 transferase, transferring glycosyl groups
Probab=31.54 E-value=9.7e+02 Score=28.68 Aligned_cols=62 Identities=15% Similarity=0.211 Sum_probs=34.2
Q ss_pred HHHHHhhhhhhhh-------hHHHHHHhhccccccchhhhhhhhHHHHHHHHHHHHHHhhhcchhHHHHHH
Q psy14534 44 EEILQRISHLETS-------SQTNVKTLFNITKQISGVEHLHSSMMELLESIETIENKVDYNLPTIQREIS 107 (423)
Q Consensus 44 ~~~~~r~~~~e~~-------~~~l~~~~~n~s~q~~~~~k~~~s~~el~e~ve~~~~~~d~~ip~~~~EI~ 107 (423)
.+.++||..||.+ .+.|-..+.-+...++.+.-++-- -+.|+||.|+.-.|+.-.+.-..+.
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (977)
T PLN02939 253 AETEERVFKLEKERSLLDASLRELESKFIVAQEDVSKLSPLQYD--CWWEKVENLQDLLDRATNQVEKAAL 321 (977)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccchhHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677788777766 444444444344444333222211 2788888888777665554444443
No 452
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=31.51 E-value=8.8e+02 Score=28.16 Aligned_cols=27 Identities=22% Similarity=0.310 Sum_probs=16.7
Q ss_pred hhhhhhhhHHHHHHHHhh---hHHHHHHHH
Q psy14534 123 VNETRESDANYLKSTVST---LATLQEKVE 149 (423)
Q Consensus 123 ~~Ee~~n~s~~i~s~~~s---is~lqek~~ 149 (423)
.++.|+.+.++|+.++++ .|.|+++++
T Consensus 647 ~k~KIe~L~~eIkkkIe~av~ss~LK~k~E 676 (762)
T PLN03229 647 LQEKIESLNEEINKKIERVIRSSDLKSKIE 676 (762)
T ss_pred hHHHHHHHHHHHHHHHHHHhcchhHHHHHH
Confidence 366677777777776664 345555555
No 453
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=31.42 E-value=7.1e+02 Score=27.07 Aligned_cols=28 Identities=7% Similarity=0.071 Sum_probs=14.4
Q ss_pred hhhhhhhhhhhhhhhhhHHHHHHHHhhh
Q psy14534 114 AQINSTLQVVNETRESDANYLKSTVSTL 141 (423)
Q Consensus 114 ~q~ts~l~~~~Ee~~n~s~~i~s~~~si 141 (423)
..+..+...++|++..+..+|......+
T Consensus 277 ~~l~~E~~~~~ee~~~l~~Qi~~l~~e~ 304 (511)
T PF09787_consen 277 EELKQERDHLQEEIQLLERQIEQLRAEL 304 (511)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555554444444
No 454
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=31.42 E-value=1.2e+02 Score=27.41 Aligned_cols=57 Identities=19% Similarity=0.142 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHH---HhhhcchhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHH
Q psy14534 82 MELLESIETIEN---KVDYNLPTIQREISKLEFGVAQINSTLQVVNETRESDANYLKSTV 138 (423)
Q Consensus 82 ~el~e~ve~~~~---~~d~~ip~~~~EI~e~e~~l~q~ts~l~~~~Ee~~n~s~~i~s~~ 138 (423)
-.|++....+|. ..-+.+-.++.||.++|..+.+-+..|+.++..++.+..++....
T Consensus 23 e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~ 82 (160)
T PF13094_consen 23 EQLLDRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEE 82 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555 233445555666666666666666666555555544444444333
No 455
>PF03978 Borrelia_REV: Borrelia burgdorferi REV protein; InterPro: IPR007126 This family consists of several REV proteins from Borrelia burgdorferi (Lyme disease spirochete) and Borrelia garinii. The function of REV is unknown although it has been shown that the gene is induced during the ingesting of host blood suggesting a role in the metabolic activation of borreliae to adapt to physiological stimuli [].
Probab=31.40 E-value=2.3e+02 Score=26.57 Aligned_cols=20 Identities=20% Similarity=0.358 Sum_probs=13.6
Q ss_pred HHHHHHHHhhhHHHHHHHHH
Q psy14534 131 ANYLKSTVSTLATLQEKVEA 150 (423)
Q Consensus 131 s~~i~s~~~sis~lqek~~~ 150 (423)
+.+|+++..+|++|..+.+.
T Consensus 27 KK~Insl~~~v~~l~nk~d~ 46 (160)
T PF03978_consen 27 KKEINSLIEDVSKLNNKSDA 46 (160)
T ss_pred HHHHHHHHHHHHHhcccccH
Confidence 45677777777777666654
No 456
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=31.40 E-value=2.8e+02 Score=22.86 Aligned_cols=39 Identities=18% Similarity=0.406 Sum_probs=20.9
Q ss_pred cccccchhhhhhhhHHHHHHHHHHHHHHhhhcchhHHHH
Q psy14534 67 ITKQISGVEHLHSSMMELLESIETIENKVDYNLPTIQRE 105 (423)
Q Consensus 67 ~s~q~~~~~k~~~s~~el~e~ve~~~~~~d~~ip~~~~E 105 (423)
++.||+.++-+..++.+|=..-..+-.+++.=|..+++|
T Consensus 34 i~~Qi~Em~~ir~~v~eLE~~h~kmK~~YEeEI~rLr~e 72 (79)
T PF08581_consen 34 INSQIQEMQQIRQKVYELEQAHRKMKQQYEEEIARLRRE 72 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666666655555555555554333333333
No 457
>PF05508 Ran-binding: RanGTP-binding protein; InterPro: IPR008812 The small Ras-like GTPase Ran plays an essential role in the transport of macromolecules in and out of the nucleus and has been implicated in spindle and nuclear envelope formation during mitosis in higher eukaryotes. The Saccharomyces cerevisiae ORF YGL164c encoding a novel RanGTP-binding protein, termed Yrb30p was identified. The protein competes with S. cerevisiae RanBP1 (Yrb1p) for binding to the GTP-bound form of S. cerevisiae Ran (Gsp1p) and is, like Yrb1p, able to form trimeric complexes with RanGTP and some of the karyopherins [].
Probab=31.26 E-value=6e+02 Score=26.18 Aligned_cols=64 Identities=17% Similarity=0.217 Sum_probs=45.2
Q ss_pred HHHHHHHHHhhhcchhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhhHHHHHHHH
Q psy14534 86 ESIETIENKVDYNLPTIQREISKLEFGVAQINSTLQVVNETRESDANYLKSTVSTLATLQEKVE 149 (423)
Q Consensus 86 e~ve~~~~~~d~~ip~~~~EI~e~e~~l~q~ts~l~~~~Ee~~n~s~~i~s~~~sis~lqek~~ 149 (423)
..++.++.+.+.-|.-+.--|-=.|.-.++=++.|...-+=.+.+..+|.+..+.+..+-+..+
T Consensus 45 ~~l~~lq~~L~~kI~IvspAIDLIel~aaRGNt~Lesal~L~~~L~~eI~~f~~~l~~~~~~~e 108 (302)
T PF05508_consen 45 KELEKLQRRLESKIKIVSPAIDLIELIAARGNTSLESALPLTKDLRREIDSFDERLEEAAEKEE 108 (302)
T ss_pred HHHHHHHHHHHhhhhccccHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 5566666666666677777777778888887777776666677777777777777666655443
No 458
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=31.25 E-value=1.7e+02 Score=30.98 Aligned_cols=26 Identities=15% Similarity=0.081 Sum_probs=12.6
Q ss_pred HHHhhhhhhhhhHHHHHHhhcccccc
Q psy14534 46 ILQRISHLETSSQTNVKTLFNITKQI 71 (423)
Q Consensus 46 ~~~r~~~~e~~~~~l~~~~~n~s~q~ 71 (423)
++++.+.+..+...|..+..-+|++|
T Consensus 35 ld~~~r~~~~~~~~l~~erN~~sk~i 60 (418)
T TIGR00414 35 LDDERKKLLSEIEELQAKRNELSKQI 60 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444544444455555
No 459
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=31.20 E-value=5.6e+02 Score=25.79 Aligned_cols=58 Identities=19% Similarity=0.275 Sum_probs=36.7
Q ss_pred HHhhccccccchhhhhhhhHHHHHHHHHHHHHHhhhcchhHHHHHHhhhhhhhhhhhhhhh
Q psy14534 62 KTLFNITKQISGVEHLHSSMMELLESIETIENKVDYNLPTIQREISKLEFGVAQINSTLQV 122 (423)
Q Consensus 62 ~~~~n~s~q~~~~~k~~~s~~el~e~ve~~~~~~d~~ip~~~~EI~e~e~~l~q~ts~l~~ 122 (423)
..+..+.+|+ +.|.+.+....+.|..|=.=.|+-.|..---|..+..++.+..-..+.
T Consensus 81 ~~l~~Lq~ql---~~l~akI~k~~~el~~L~TYkD~EYPvK~vqIa~L~rqlq~lk~~qqd 138 (258)
T PF15397_consen 81 SKLSKLQQQL---EQLDAKIQKTQEELNFLSTYKDHEYPVKAVQIANLVRQLQQLKDSQQD 138 (258)
T ss_pred hHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444 555556666666667777777777777777777777777766665543
No 460
>KOG2115|consensus
Probab=31.14 E-value=4.7e+02 Score=30.89 Aligned_cols=51 Identities=8% Similarity=-0.016 Sum_probs=34.0
Q ss_pred chhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhhHHHHHHHH
Q psy14534 99 LPTIQREISKLEFGVAQINSTLQVVNETRESDANYLKSTVSTLATLQEKVE 149 (423)
Q Consensus 99 ip~~~~EI~e~e~~l~q~ts~l~~~~Ee~~n~s~~i~s~~~sis~lqek~~ 149 (423)
++..-.+...+..+++++.++++.++|-++.+-......+-.|..+..+.+
T Consensus 270 Ffha~~~~~~Lq~~~~d~~~~vk~Lre~i~~vd~~~~~~s~~Ile~~~~r~ 320 (951)
T KOG2115|consen 270 FFHAMTSLHNLQKELRDTMSEVKELRENIKEVDAENVRKSIKILELALTRK 320 (951)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 456666677777777777777777777777777666666655544444443
No 461
>PF04297 UPF0122: Putative helix-turn-helix protein, YlxM / p13 like; InterPro: IPR007394 Members of this family are predicted to contain a helix-turn-helix motif, for example residues 37-55 in Mycoplasma mycoides p13 (O05290 from SWISSPROT). Genes encoding family members are often part of operons that encode components of the SRP pathway, and this protein may regulate the expression of an operon related to the SRP pathway [].; PDB: 1S7O_A 1XSV_B.
Probab=31.06 E-value=1.1e+02 Score=26.54 Aligned_cols=59 Identities=17% Similarity=0.159 Sum_probs=36.5
Q ss_pred HHhhccccccchhhhhhhhHHHHHHHHHHHHHHhhhcchhHHHHHHhhhhhhhhhhhhhhhhhhhh
Q psy14534 62 KTLFNITKQISGVEHLHSSMMELLESIETIENKVDYNLPTIQREISKLEFGVAQINSTLQVVNETR 127 (423)
Q Consensus 62 ~~~~n~s~q~~~~~k~~~s~~el~e~ve~~~~~~d~~ip~~~~EI~e~e~~l~q~ts~l~~~~Ee~ 127 (423)
.+..++|||- +|.++-.--+.++.+|++. .+-+...+..++-..+.......+...+++
T Consensus 40 Ae~~~iSRqa-----V~d~ikr~~~~L~~yE~kL--~l~~k~~~~~~~~~~i~~~~~~~~~~~~~~ 98 (101)
T PF04297_consen 40 AEELGISRQA-----VYDSIKRAEKKLEEYEEKL--GLVEKFQKRKKLLEQIEEILDDEKNLEKEV 98 (101)
T ss_dssp HHHCTS-HHH-----HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHCCHTTTHHHHHHHH
T ss_pred HHHHCCCHHH-----HHHHHHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHHhhHhHHHHH
Confidence 4678899998 8888877778888888888 444444555555555554444444333333
No 462
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=30.78 E-value=4.4e+02 Score=26.73 Aligned_cols=10 Identities=30% Similarity=0.321 Sum_probs=4.9
Q ss_pred HHHHHHHHHH
Q psy14534 34 HKMKTLQAIN 43 (423)
Q Consensus 34 ~~~~~l~~~~ 43 (423)
.++..|++|.
T Consensus 97 S~~silq~If 106 (269)
T PF05278_consen 97 SQVSILQKIF 106 (269)
T ss_pred hHHHHHHHHH
Confidence 3345555543
No 463
>KOG3091|consensus
Probab=30.68 E-value=3.7e+02 Score=29.53 Aligned_cols=33 Identities=18% Similarity=0.187 Sum_probs=17.7
Q ss_pred HHHHHhhccccccchhhhhhhhHHHHHHHHHHH
Q psy14534 59 TNVKTLFNITKQISGVEHLHSSMMELLESIETI 91 (423)
Q Consensus 59 ~l~~~~~n~s~q~~~~~k~~~s~~el~e~ve~~ 91 (423)
.|...+-++.+++..=+.+.+-+-+|+|-++..
T Consensus 415 ~Lr~Kldtll~~ln~Pnq~k~Rl~~L~e~~r~q 447 (508)
T KOG3091|consen 415 ELRAKLDTLLAQLNAPNQLKARLDELYEILRMQ 447 (508)
T ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHHHHHhh
Confidence 344455555555555555555555555555444
No 464
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=30.43 E-value=4.5e+02 Score=26.97 Aligned_cols=34 Identities=9% Similarity=0.098 Sum_probs=14.3
Q ss_pred HHHHHhhhhhhhhhhhhhhhhhhhhhhhHHHHHH
Q psy14534 103 QREISKLEFGVAQINSTLQVVNETRESDANYLKS 136 (423)
Q Consensus 103 ~~EI~e~e~~l~q~ts~l~~~~Ee~~n~s~~i~s 136 (423)
+.++.+.+.+++.....|...+.++..+...|..
T Consensus 220 ~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~ 253 (344)
T PF12777_consen 220 RQKLEEAEAELEEAEEQLAEKQAELAELEEKLAA 253 (344)
T ss_dssp HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444433333333
No 465
>PRK07739 flgK flagellar hook-associated protein FlgK; Validated
Probab=30.38 E-value=7.4e+02 Score=26.92 Aligned_cols=54 Identities=15% Similarity=0.231 Sum_probs=38.2
Q ss_pred hhhhhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q psy14534 121 QVVNETRESDANYLKSTVSTLATLQEKVEANNIIMQALSDANYLKSTVSTLATLQEKVE 179 (423)
Q Consensus 121 ~~~~Ee~~n~s~~i~s~~~sis~lqek~~~~~kv~~le~Q~~~I~~l~~~v~~~~~ql~ 179 (423)
+.+-+..+.+...++.+...+..++..++ .+|..+...|..+++.++.+++++.
T Consensus 142 ~~vl~~a~~La~~~n~~~~~L~~~~~~~~-----~~i~~~V~~iN~ll~~Ia~LN~~I~ 195 (507)
T PRK07739 142 SVVRQRAQALAETFNYLSQSLTDIQNDLK-----SEIDVTVKEINSLASQISDLNKQIA 195 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677888888888888866666653 2455667778888888888877643
No 466
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=30.25 E-value=1.6e+02 Score=24.53 Aligned_cols=60 Identities=22% Similarity=0.253 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhHH-HHHHhhccccccc-hhhhhhhhHHHHHHHHHHHHHHh
Q psy14534 35 KMKTLQAINEEILQRISHLETSSQT-NVKTLFNITKQIS-GVEHLHSSMMELLESIETIENKV 95 (423)
Q Consensus 35 ~~~~l~~~~~~~~~r~~~~e~~~~~-l~~~~~n~s~q~~-~~~k~~~s~~el~e~ve~~~~~~ 95 (423)
....|++.+.++.++|.. |...+. |.+++.+.+..+. .-.-+-.++-+||..|..+|..|
T Consensus 9 ~r~~LeqeV~~Lq~~L~~-E~~~r~aLe~al~~~~~~~~~~~~~lp~~~keLL~EIA~lE~eV 70 (88)
T PF14389_consen 9 RRSALEQEVAELQKQLQE-EQDLRRALEKALGRSSGSLPSSPSSLPKKAKELLEEIALLEAEV 70 (88)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCCCcccCCccccCChHHHHHHHHHHHHHHHH
Confidence 344555555555555542 223332 3333333333232 11345667788888888887655
No 467
>KOG4643|consensus
Probab=30.23 E-value=1e+03 Score=28.66 Aligned_cols=46 Identities=17% Similarity=0.302 Sum_probs=19.8
Q ss_pred hhhhhHHHHHHhhccccccchhhhhhhhH----HHHHHHHHHHHHHhhhc
Q psy14534 53 LETSSQTNVKTLFNITKQISGVEHLHSSM----MELLESIETIENKVDYN 98 (423)
Q Consensus 53 ~e~~~~~l~~~~~n~s~q~~~~~k~~~s~----~el~e~ve~~~~~~d~~ 98 (423)
|+..-+.|.+++.-..+|.+.+..+---. -+|++.++.....++..
T Consensus 413 Ls~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~~rq 462 (1195)
T KOG4643|consen 413 LSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTRSLSRQ 462 (1195)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 33334444444444444444333222222 14555555555555444
No 468
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=29.80 E-value=41 Score=32.90 Aligned_cols=7 Identities=43% Similarity=0.819 Sum_probs=2.5
Q ss_pred hhHHHHH
Q psy14534 79 SSMMELL 85 (423)
Q Consensus 79 ~s~~el~ 85 (423)
..+++|+
T Consensus 149 ~rl~~ll 155 (262)
T PF14257_consen 149 ERLLELL 155 (262)
T ss_pred HHHHHHH
Confidence 3333333
No 469
>PF01496 V_ATPase_I: V-type ATPase 116kDa subunit family ; InterPro: IPR002490 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents the 116kDa subunit (or subunit a) and subunit I found in the V0 or A0 complex of V- or A-ATPases, respectively. The 116kDa subunit is a transmembrane glycoprotein required for the assembly and proton transport activity of the ATPase complex. Several isoforms of the 116kDa subunit exist, providing a potential role in the differential targeting and regulation of the V-ATPase for specific organelles []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 2RPW_X 2NVJ_A 2JTW_A 3RRK_A.
Probab=29.76 E-value=2.1e+02 Score=32.50 Aligned_cols=40 Identities=18% Similarity=0.270 Sum_probs=0.0
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHH
Q psy14534 22 KHHLEKEQHVINHKMKTLQAINEEILQRISHLETSSQTNV 61 (423)
Q Consensus 22 ~~~le~~~~~~~~~~~~l~~~~~~~~~r~~~~e~~~~~l~ 61 (423)
+.++|.+...+..++.++.+..+.+.++++.++.....|.
T Consensus 69 i~~le~~l~~le~~l~e~~~~~e~L~~~~~~L~E~~~~L~ 108 (759)
T PF01496_consen 69 IDELEEELEELEEELRELNENLEKLEEELNELEEEKNVLE 108 (759)
T ss_dssp ----------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443334444444444444433333
No 470
>KOG1962|consensus
Probab=29.69 E-value=2.8e+02 Score=27.18 Aligned_cols=16 Identities=25% Similarity=0.293 Sum_probs=8.7
Q ss_pred CcccchhhHHHHHhhH
Q psy14534 10 PRYRNGKLFLKTKHHL 25 (423)
Q Consensus 10 ~~~r~~~~~~~~~~~l 25 (423)
+++|-.+++..++...
T Consensus 24 p~r~~~~~~~~~~~~~ 39 (216)
T KOG1962|consen 24 PPRRRRKIFKDRLKSG 39 (216)
T ss_pred CHHHHHHHHHHHHHHh
Confidence 5555556665555443
No 471
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=29.68 E-value=1.9e+02 Score=24.66 Aligned_cols=21 Identities=14% Similarity=0.180 Sum_probs=8.1
Q ss_pred HHHhhhhhhhhhHHHHHHhhc
Q psy14534 46 ILQRISHLETSSQTNVKTLFN 66 (423)
Q Consensus 46 ~~~r~~~~e~~~~~l~~~~~n 66 (423)
++.+|+.|+.....|.+.+.+
T Consensus 79 ie~~i~~lek~~~~l~~~l~e 99 (110)
T TIGR02338 79 LELRVKTLQRQEERLREQLKE 99 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 472
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=29.67 E-value=4.1e+02 Score=23.73 Aligned_cols=28 Identities=11% Similarity=0.368 Sum_probs=14.1
Q ss_pred cccccchhhhhhhhHHHHHHHHHHHHHH
Q psy14534 67 ITKQISGVEHLHSSMMELLESIETIENK 94 (423)
Q Consensus 67 ~s~q~~~~~k~~~s~~el~e~ve~~~~~ 94 (423)
+..+++-+..++...--++-+.-.+|..
T Consensus 8 ~q~~l~q~QqLq~ql~~~~~qk~~le~q 35 (119)
T COG1382 8 VQAQLAQLQQLQQQLQKVILQKQQLEAQ 35 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555444444443
No 473
>PRK06945 flgK flagellar hook-associated protein FlgK; Validated
Probab=29.52 E-value=4.8e+02 Score=29.49 Aligned_cols=19 Identities=0% Similarity=0.018 Sum_probs=9.9
Q ss_pred cchhhHHHHHhhHHHHHHH
Q psy14534 13 RNGKLFLKTKHHLEKEQHV 31 (423)
Q Consensus 13 r~~~~~~~~~~~le~~~~~ 31 (423)
-...|+..|+..-......
T Consensus 66 ~~d~fl~~q~r~~~s~~~~ 84 (651)
T PRK06945 66 QYSQYLSAQLNNAQAASSS 84 (651)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455666666554444433
No 474
>PF06009 Laminin_II: Laminin Domain II; InterPro: IPR010307 It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure [].; GO: 0007155 cell adhesion, 0005604 basement membrane; PDB: 2WJS_A.
Probab=29.18 E-value=18 Score=32.33 Aligned_cols=41 Identities=17% Similarity=0.263 Sum_probs=0.0
Q ss_pred cchhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHH
Q psy14534 98 NLPTIQREISKLEFGVAQINSTLQVVNETRESDANYLKSTV 138 (423)
Q Consensus 98 ~ip~~~~EI~e~e~~l~q~ts~l~~~~Ee~~n~s~~i~s~~ 138 (423)
.+++++..+.+....+..|+..++..++.+..+...+....
T Consensus 25 ~l~~~~~~~~~~~~~v~~t~~~~~~~~~~l~~a~~~v~~L~ 65 (138)
T PF06009_consen 25 NLENWSENLGEINSDVEETNQDISDANKALDDANNSVKNLE 65 (138)
T ss_dssp -----------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555544454444444444444443333333
No 475
>KOG4673|consensus
Probab=29.16 E-value=9.6e+02 Score=27.84 Aligned_cols=12 Identities=17% Similarity=0.086 Sum_probs=6.4
Q ss_pred hhhHHHHHHhhc
Q psy14534 55 TSSQTNVKTLFN 66 (423)
Q Consensus 55 ~~~~~l~~~~~n 66 (423)
.+++.|.++++|
T Consensus 430 ~e~kslk~ela~ 441 (961)
T KOG4673|consen 430 REQKSLKKELAA 441 (961)
T ss_pred HHHHHHHHHHHH
Confidence 345555555555
No 476
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=29.13 E-value=1.2e+02 Score=24.53 Aligned_cols=9 Identities=33% Similarity=0.660 Sum_probs=3.2
Q ss_pred HHHHHHhhh
Q psy14534 102 IQREISKLE 110 (423)
Q Consensus 102 ~~~EI~e~e 110 (423)
+|..+++.|
T Consensus 38 Lr~~~~e~e 46 (74)
T PF12329_consen 38 LRAKIKELE 46 (74)
T ss_pred HHHHHHHHH
Confidence 333333333
No 477
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=29.05 E-value=3.5e+02 Score=22.78 Aligned_cols=93 Identities=15% Similarity=0.138 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhcchhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHH
Q psy14534 86 ESIETIENKVDYNLPTIQREISKLEFGVAQINSTLQVVNETRESDANYLKSTVSTLATLQEKVEANNIIMQALSDANYLK 165 (423)
Q Consensus 86 e~ve~~~~~~d~~ip~~~~EI~e~e~~l~q~ts~l~~~~Ee~~n~s~~i~s~~~sis~lqek~~~~~kv~~le~Q~~~I~ 165 (423)
+.+..+-.-++-.+.....+++-+|.-..-++.+-..+..-..+++..++.+......|+.-+ ++|.+|+.|...|.
T Consensus 3 ~~f~~~~~~v~~el~~t~~d~~LLe~mN~~~~~kY~~~~~~~~~l~~~~~~l~~k~~~l~~~l---~~Id~Ie~~V~~LE 79 (99)
T PF10046_consen 3 RMFSKVSKYVESELEATNEDYNLLENMNKATSLKYKKMKDIAAGLEKNLEDLNQKYEELQPYL---QQIDQIEEQVTELE 79 (99)
T ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHh
Q psy14534 166 STVSTLATLQEKVEAN 181 (423)
Q Consensus 166 ~l~~~v~~~~~ql~~q 181 (423)
.+...+..-.+.|...
T Consensus 80 ~~v~~LD~ysk~LE~k 95 (99)
T PF10046_consen 80 QTVYELDEYSKELESK 95 (99)
T ss_pred HHHHHHHHHHHHHHHH
No 478
>PRK04406 hypothetical protein; Provisional
Probab=28.97 E-value=1.5e+02 Score=24.10 Aligned_cols=54 Identities=9% Similarity=0.178 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhHHHHHHhhccccccchhhhhhhhHHHHHHHHHHHH
Q psy14534 36 MKTLQAINEEILQRISHLETSSQTNVKTLFNITKQISGVEHLHSSMMELLESIETIE 92 (423)
Q Consensus 36 ~~~l~~~~~~~~~r~~~~e~~~~~l~~~~~n~s~q~~~~~k~~~s~~el~e~ve~~~ 92 (423)
+..++.+..++..||-+.|.+...|.+.++.-.++| +++...+-.|.+.+..++
T Consensus 6 ~~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I---~~L~~ql~~L~~rl~~~~ 59 (75)
T PRK04406 6 IEQLEERINDLECQLAFQEQTIEELNDALSQQQLLI---TKMQDQMKYVVGKVKNMD 59 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhc
No 479
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=28.96 E-value=4.7e+02 Score=24.19 Aligned_cols=135 Identities=13% Similarity=0.103 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhccccccchhhhhhhhHHHHHHHHHHHHHHhhhcchhH
Q psy14534 23 HHLEKEQHVINHKMKTLQAINEEILQRISHLETSSQTNVKTLFNITKQISGVEHLHSSMMELLESIETIENKVDYNLPTI 102 (423)
Q Consensus 23 ~~le~~~~~~~~~~~~l~~~~~~~~~r~~~~e~~~~~l~~~~~n~s~q~~~~~k~~~s~~el~e~ve~~~~~~d~~ip~~ 102 (423)
.|-|.-++.+..-++.--.....-.-.-..+|.....+..+++.+...|..+.+-+- .+|-...+.+...+|+.-..+
T Consensus 19 ~QAe~i~~~l~~~l~~~~~~~~~~~vtk~d~e~~~~~~~a~~~eLr~el~~~~k~~~--~~lr~~~e~L~~eie~l~~~L 96 (177)
T PF07798_consen 19 EQAEAIMKALREVLNDSLEKVAQDLVTKSDLENQEYLFKAAIAELRSELQNSRKSEF--AELRSENEKLQREIEKLRQEL 96 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhhhhhhh-hhhhhhhhhhhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhH
Q psy14534 103 QREISKLEFGVA-QINSTLQVVNETRESDANYLKSTVSTLATLQEKVEANNIIMQALSDA 161 (423)
Q Consensus 103 ~~EI~e~e~~l~-q~ts~l~~~~Ee~~n~s~~i~s~~~sis~lqek~~~~~kv~~le~Q~ 161 (423)
+.||.++..+++ ..+-+-..++++...+...|......+ -.+-.++...++.+.-+.
T Consensus 97 ~~ei~~l~a~~klD~n~eK~~~r~e~~~~~~ki~e~~~ki--~~ei~~lr~~iE~~K~~~ 154 (177)
T PF07798_consen 97 REEINKLRAEVKLDLNLEKGRIREEQAKQELKIQELNNKI--DTEIANLRTEIESLKWDT 154 (177)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
No 480
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=28.80 E-value=1e+03 Score=28.18 Aligned_cols=150 Identities=13% Similarity=0.148 Sum_probs=0.0
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHH---HHHHHHHhhhhhhhhhHHHHHHhhccccccchhhhhhhhHHHHHHHHHHHHHH
Q psy14534 18 FLKTKHHLEKEQHVINHKMKTLQA---INEEILQRISHLETSSQTNVKTLFNITKQISGVEHLHSSMMELLESIETIENK 94 (423)
Q Consensus 18 ~~~~~~~le~~~~~~~~~~~~l~~---~~~~~~~r~~~~e~~~~~l~~~~~n~s~q~~~~~k~~~s~~el~e~ve~~~~~ 94 (423)
+.++|++++.+..+-.++.+.+.+ .+....+|+..|..+.+.+.+.+-++-.-+.....+.++- .|++.
T Consensus 186 ~l~klkq~~~ei~e~eke~a~yh~lLe~r~~~~~rl~~l~~elr~~~~~i~~~~~~v~l~~~lqE~k--------~Leqe 257 (984)
T COG4717 186 LLEKLKQERNEIDEAEKEYATYHKLLESRRAEHARLAELRSELRADRDHIRALRDAVELWPRLQEWK--------QLEQE 257 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH--------HHHHH
Q ss_pred hhh------cchhH-HHHHHhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHH
Q psy14534 95 VDY------NLPTI-QREISKLEFGVAQINSTLQVVNETRESDANYLKSTVSTLATLQEKVEANNIIMQALSDANYLKST 167 (423)
Q Consensus 95 ~d~------~ip~~-~~EI~e~e~~l~q~ts~l~~~~Ee~~n~s~~i~s~~~sis~lqek~~~~~kv~~le~Q~~~I~~l 167 (423)
.+. ++|.- =-+..+.+.++.++.+.+.+++..+ .++..-...+ +..+..--.-...+.+|...|+..
T Consensus 258 l~~~~~e~~~fP~DGvlrlEk~~ahL~~~ea~i~~~~vrl----ae~~d~~~~L--iP~ke~vl~~~~~l~q~~s~i~~~ 331 (984)
T COG4717 258 LTRRREELATFPRDGVLRLEKREAHLQKTEAEIDALLVRL----AELKDLASQL--IPAKEAVLQALVRLHQQLSEIKAS 331 (984)
T ss_pred hccchhhhccCCchhHHHHHHHHHhhhhhhhhhHHHHHHH----HhhhHHHHhc--cchHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHh
Q psy14534 168 VSTLATLQEKVEAN 181 (423)
Q Consensus 168 ~~~v~~~~~ql~~q 181 (423)
.......-.-+..+
T Consensus 332 ~~E~te~~~~i~~~ 345 (984)
T COG4717 332 AFELTETLAGIEAD 345 (984)
T ss_pred hHHHHHHHHhHHHH
No 481
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=28.67 E-value=4.1e+02 Score=23.41 Aligned_cols=92 Identities=15% Similarity=0.227 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhhhhhhhHHHHHHhhc-cccccchhhhhhhhHHHHHHHHHHHHHHhhhcchhHHHHHHhhhhhhhhhh
Q psy14534 39 LQAINEEILQRISHLETSSQTNVKTLFN-ITKQISGVEHLHSSMMELLESIETIENKVDYNLPTIQREISKLEFGVAQIN 117 (423)
Q Consensus 39 l~~~~~~~~~r~~~~e~~~~~l~~~~~n-~s~q~~~~~k~~~s~~el~e~ve~~~~~~d~~ip~~~~EI~e~e~~l~q~t 117 (423)
+..-..++..-|..++.+.+.+..+... +-.|.+...++.+.+-.|-.+|+.|...+ .-++.||.+==+.+...+
T Consensus 31 ~~~~l~kL~~~i~eld~~i~~~v~~~~~~LL~q~~~~~~~~~~l~~v~~~v~~L~~s~----~RL~~eV~~Py~~~~~~~ 106 (132)
T PF10392_consen 31 ISTPLKKLNFDIQELDKRIRSQVTSNHEDLLSQASSIEELESVLQAVRSSVESLQSSY----ERLRSEVIEPYEKIQKLT 106 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhHHHHHHHHH
Q ss_pred hhhhhhhhhhhhhHHHH
Q psy14534 118 STLQVVNETRESDANYL 134 (423)
Q Consensus 118 s~l~~~~Ee~~n~s~~i 134 (423)
..|+-+..-..=++.-+
T Consensus 107 ~~L~rl~~t~~LLR~~~ 123 (132)
T PF10392_consen 107 SQLERLHQTSDLLRSVS 123 (132)
T ss_pred HHHHHHHHHHHHHHHHH
No 482
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=28.55 E-value=3.3e+02 Score=23.94 Aligned_cols=86 Identities=17% Similarity=0.218 Sum_probs=0.0
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHH-------HHHHhhhhhhhhhHHHHHHhhccccccchhhhhhhhHHHHHHHHHHH
Q psy14534 19 LKTKHHLEKEQHVINHKMKTLQAINE-------EILQRISHLETSSQTNVKTLFNITKQISGVEHLHSSMMELLESIETI 91 (423)
Q Consensus 19 ~~~~~~le~~~~~~~~~~~~l~~~~~-------~~~~r~~~~e~~~~~l~~~~~n~s~q~~~~~k~~~s~~el~e~ve~~ 91 (423)
++.-..|+-++..+..++..|+..+| ++..-=+-|+..++.|......++..+ +.|..++-+++..|+.
T Consensus 1 ~ee~~~l~as~~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~---~eLqaki~ea~~~le~- 76 (107)
T PF09304_consen 1 KEEKEALEASQNELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRI---AELQAKIDEARRNLED- 76 (107)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH-
T ss_pred CcHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH-
Q ss_pred HHHhhhcchhHHHHHHhhhh
Q psy14534 92 ENKVDYNLPTIQREISKLEF 111 (423)
Q Consensus 92 ~~~~d~~ip~~~~EI~e~e~ 111 (423)
.++ ---++.....|.+.
T Consensus 77 -eK~--ak~~l~~r~~k~~~ 93 (107)
T PF09304_consen 77 -EKQ--AKLELESRLLKAQK 93 (107)
T ss_dssp -HHH--HHHHHHHHHHHHHH
T ss_pred -HHH--HHHHHHHHHHHHHh
No 483
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=28.41 E-value=1.8e+02 Score=24.40 Aligned_cols=73 Identities=14% Similarity=0.260 Sum_probs=0.0
Q ss_pred hhhhhhhHHHHHHHHHHHHHHhhhcchhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhhHHHHHH
Q psy14534 74 VEHLHSSMMELLESIETIENKVDYNLPTIQREISKLEFGVAQINSTLQVVNETRESDANYLKSTVSTLATLQEK 147 (423)
Q Consensus 74 ~~k~~~s~~el~e~ve~~~~~~d~~ip~~~~EI~e~e~~l~q~ts~l~~~~Ee~~n~s~~i~s~~~sis~lqek 147 (423)
+|.|.+++-+-++..... ..++.-+-.+...-+.+..+|-+.-+....+.+-.++++.-|.+.+++|..+-++
T Consensus 17 id~LE~~v~~r~~~~~~~-~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~e~Ir~vL~r 89 (89)
T PF13747_consen 17 IDRLEKAVDRRLERDRKR-DELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSAIETIRAVLDR 89 (89)
T ss_pred HHHHHHHHHHHHHhhhhh-hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
No 484
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=28.41 E-value=1e+02 Score=31.60 Aligned_cols=92 Identities=12% Similarity=0.164 Sum_probs=0.0
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhccccccchhhhhhhhHHHHHHHHHHHHHHhhh
Q psy14534 18 FLKTKHHLEKEQHVINHKMKTLQAINEEILQRISHLETSSQTNVKTLFNITKQISGVEHLHSSMMELLESIETIENKVDY 97 (423)
Q Consensus 18 ~~~~~~~le~~~~~~~~~~~~l~~~~~~~~~r~~~~e~~~~~l~~~~~n~s~q~~~~~k~~~s~~el~e~ve~~~~~~d~ 97 (423)
+++.+.+++.+......+|..++....++.++|..|+.+......+...+..++.....--..-..|+..+..=-.+-..
T Consensus 219 ~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~RW~~ 298 (344)
T PF12777_consen 219 KRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEKERWSE 298 (344)
T ss_dssp HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchhhhHHH
Q ss_pred cchhHHHHHHhh
Q psy14534 98 NLPTIQREISKL 109 (423)
Q Consensus 98 ~ip~~~~EI~e~ 109 (423)
++..+...++-+
T Consensus 299 ~~~~l~~~~~~l 310 (344)
T PF12777_consen 299 QIEELEEQLKNL 310 (344)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHhccc
No 485
>PRK10807 paraquat-inducible protein B; Provisional
Probab=28.30 E-value=6e+02 Score=28.07 Aligned_cols=99 Identities=13% Similarity=0.240 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHhhhcchhHHHHHHhhhhhhhhhhhhhhhhhhhhhh-----hHHHHHHHHhhhHHHHHHHHHHHH
Q psy14534 79 SSMMELLESIETIENKVDYNLPTIQREISKLEFGVAQINSTLQVVNETRES-----DANYLKSTVSTLATLQEKVEANNI 153 (423)
Q Consensus 79 ~s~~el~e~ve~~~~~~d~~ip~~~~EI~e~e~~l~q~ts~l~~~~Ee~~n-----~s~~i~s~~~sis~lqek~~~~~k 153 (423)
+.+-+|.+++..+-+++ ..+| +..-+..++..++.+.+.++.++..+.+ .+..++.+..++ -+.-.++++.
T Consensus 413 s~l~~l~~~~~~il~ki-n~lp-le~i~~~l~~tL~~~~~tl~~l~~~l~~l~~ll~~~~~~~Lp~~L--~~TL~~l~~~ 488 (547)
T PRK10807 413 GGLAQIQQKLMEALDKI-NNLP-LNPMIEQATSTLSESQRTMRELQTTLDSLNKITSSQSMQQLPADM--QKTLRELNRS 488 (547)
T ss_pred CCHHHHHHHHHHHHHHH-hcCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCHHHHHHHHHH--HHHHHHHHHH
Q ss_pred HHH----------HHhhHHHHHHHHHHHHHHHHHHHHh
Q psy14534 154 IMQ----------ALSDANYLKSTVSTLATLQEKVEAN 181 (423)
Q Consensus 154 v~~----------le~Q~~~I~~l~~~v~~~~~ql~~q 181 (423)
+.. +.+-+..|.++++.++.+-+.|+.|
T Consensus 489 l~~~~~~s~~~~~l~~tl~~l~~~~r~lr~l~~~L~~~ 526 (547)
T PRK10807 489 MQGFQPGSPAYNKMVADMQRLDQVLRELQPVLKTLNEK 526 (547)
T ss_pred HhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
No 486
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=28.28 E-value=5.2e+02 Score=24.82 Aligned_cols=96 Identities=13% Similarity=0.206 Sum_probs=0.0
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhccccccchhhhhhhhHHHHHH--------HHHH
Q psy14534 19 LKTKHHLEKEQHVINHKMKTLQAINEEILQRISHLETSSQTNVKTLFNITKQISGVEHLHSSMMELLE--------SIET 90 (423)
Q Consensus 19 ~~~~~~le~~~~~~~~~~~~l~~~~~~~~~r~~~~e~~~~~l~~~~~n~s~q~~~~~k~~~s~~el~e--------~ve~ 90 (423)
+++|.++..---.+..+++.++...+.+-+-++---..-..+...+..+..+|.++|+=--+||+||| -.|.
T Consensus 71 r~DiarvA~lvinlE~kvD~lee~fdd~~d~l~~q~eq~~~~~~~v~~~~q~~~~l~~K~D~~L~llE~~~~~~~~~~~~ 150 (189)
T TIGR02132 71 KEDIANVASLVINLEEKVDLIEEFFDDKFDELEAQQEQAPALKKDVTKLKQDIKSLDKKLDKILELLEGQQKTQDELKET 150 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHhHHHHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHH
Q ss_pred HHHHhhhcchhHHHHHHhhhhhhh
Q psy14534 91 IENKVDYNLPTIQREISKLEFGVA 114 (423)
Q Consensus 91 ~~~~~d~~ip~~~~EI~e~e~~l~ 114 (423)
|+..+-..=.+++--+-+....+.
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~ 174 (189)
T TIGR02132 151 IQKQIKTQGEQLQAQLLEKQEALA 174 (189)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHH
No 487
>KOG3564|consensus
Probab=28.19 E-value=3.6e+02 Score=29.72 Aligned_cols=89 Identities=13% Similarity=0.190 Sum_probs=0.0
Q ss_pred ccchhhhhhhhHHHHHHHHHHHHHHhhhcchhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhhHHHHHHHH
Q psy14534 70 QISGVEHLHSSMMELLESIETIENKVDYNLPTIQREISKLEFGVAQINSTLQVVNETRESDANYLKSTVSTLATLQEKVE 149 (423)
Q Consensus 70 q~~~~~k~~~s~~el~e~ve~~~~~~d~~ip~~~~EI~e~e~~l~q~ts~l~~~~Ee~~n~s~~i~s~~~sis~lqek~~ 149 (423)
+|-+... -..+++|+..-|-++++. ....-|+.|.+..|++.-.+++.+--+++-..+.|.+. ++++..
T Consensus 20 ~~l~~g~-e~ef~rl~k~fed~~ek~----~r~~ae~~~~~~~L~Ka~tk~~~ldvklkha~~~vda~------ik~rr~ 88 (604)
T KOG3564|consen 20 EILGEGN-EDEFIRLRKDFEDFEEKW----KRTDAELGKYKDLLAKAETKRSALDVKLKHARNQVDAE------IKRRRR 88 (604)
T ss_pred HHhcCcc-HHHHHHHHHHHHHHHHHH----hhhhHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHH------HHHHHH
Q ss_pred HHHHHHHHHhhHHHHHHHHH
Q psy14534 150 ANNIIMQALSDANYLKSTVS 169 (423)
Q Consensus 150 ~~~kv~~le~Q~~~I~~l~~ 169 (423)
+..-...+|+|+..|++++.
T Consensus 89 ae~d~~~~E~~i~~i~d~l~ 108 (604)
T KOG3564|consen 89 AEADCEKLETQIQLIKDMLK 108 (604)
T ss_pred HhhhHHHHHHHHHHHHHHHh
No 488
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=28.16 E-value=2e+02 Score=24.70 Aligned_cols=50 Identities=12% Similarity=0.247 Sum_probs=0.0
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhh---hhhhHHHHHHhhccccc
Q psy14534 21 TKHHLEKEQHVINHKMKTLQAINEEILQRISHL---ETSSQTNVKTLFNITKQ 70 (423)
Q Consensus 21 ~~~~le~~~~~~~~~~~~l~~~~~~~~~r~~~~---e~~~~~l~~~~~n~s~q 70 (423)
...+++.....+..+++.+++.++.+.+.|..| +.-..+++.+-.+.+++
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiEe~AR~~Lg~vk~ 80 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAIEERARNELGMVKP 80 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHcCCCCC
No 489
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=27.92 E-value=3.7e+02 Score=22.63 Aligned_cols=98 Identities=17% Similarity=0.181 Sum_probs=0.0
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh--hhHHHHHHhhccccccchhhhhhhhHHHHHHHHHHHHHHh
Q psy14534 18 FLKTKHHLEKEQHVINHKMKTLQAINEEILQRISHLET--SSQTNVKTLFNITKQISGVEHLHSSMMELLESIETIENKV 95 (423)
Q Consensus 18 ~~~~~~~le~~~~~~~~~~~~l~~~~~~~~~r~~~~e~--~~~~l~~~~~n~s~q~~~~~k~~~s~~el~e~ve~~~~~~ 95 (423)
+-.++..|+..+..+..++..|+....+...=+..|+. ....+-..+-++--.. +++...+.+
T Consensus 4 ~~~~~q~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL~~l~~d~~vy~~VG~vfv~~---------------~~~ea~~~L 68 (105)
T cd00632 4 QLAQLQQLQQQLQAYIVQRQKVEAQLNENKKALEELEKLADDAEVYKLVGNVLVKQ---------------EKEEARTEL 68 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHhhhHHhhc---------------cHHHHHHHH
Q ss_pred hhcchhHHHHHHhhhhhhhhhhhhhhhhhhhhhhh
Q psy14534 96 DYNLPTIQREISKLEFGVAQINSTLQVVNETRESD 130 (423)
Q Consensus 96 d~~ip~~~~EI~e~e~~l~q~ts~l~~~~Ee~~n~ 130 (423)
+..+..+..+|++++..+..+..+++.++.++.++
T Consensus 69 e~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 69 KERLETIELRIKRLERQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 490
>PRK05561 DNA topoisomerase IV subunit A; Validated
Probab=27.91 E-value=4.3e+02 Score=30.40 Aligned_cols=111 Identities=13% Similarity=0.124 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH---HHhhhhhhhhhHHHHH---HhhccccccchhhhhhhhH--HHHHHHHHHHHHH
Q psy14534 23 HHLEKEQHVINHKMKTLQAINEEI---LQRISHLETSSQTNVK---TLFNITKQISGVEHLHSSM--MELLESIETIENK 94 (423)
Q Consensus 23 ~~le~~~~~~~~~~~~l~~~~~~~---~~r~~~~e~~~~~l~~---~~~n~s~q~~~~~k~~~s~--~el~e~ve~~~~~ 94 (423)
|+++.-++.+..+++.+++..|-+ ..-+..++.-...+.+ +..++..+....+..-..+ |.|..=-.-=.++
T Consensus 362 ~R~~~~~rr~~~~l~k~~~r~~~l~g~~~~~~~id~vI~iir~s~~ak~~l~~~f~~~~~qa~~Il~m~L~~Lt~le~~k 441 (742)
T PRK05561 362 HRREVVTRRSQFRLDKVEKRLHILEGLLIAFLNIDEVIRIIRESDEPKANLMARFDLSEIQAEAILELRLRRLAKLEEIE 441 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCccHHHHHHHHhCCCHHHHHHHHHhhHHHHHHHHHHH
Q ss_pred hhhcchhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhHHH
Q psy14534 95 VDYNLPTIQREISKLEFGVAQINSTLQVVNETRESDANY 133 (423)
Q Consensus 95 ~d~~ip~~~~EI~e~e~~l~q~ts~l~~~~Ee~~n~s~~ 133 (423)
+.+-+.+++.||++++.-|+....-...+.+|+..++..
T Consensus 442 l~~E~~~l~~ei~~l~~iL~s~~~l~~~i~~eL~~ik~k 480 (742)
T PRK05561 442 IRKEQDELRKEIAELEAILASERKLRKLIKKELKADAKK 480 (742)
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
No 491
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=27.85 E-value=3.1e+02 Score=25.16 Aligned_cols=118 Identities=14% Similarity=0.198 Sum_probs=0.0
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHH--HHhhc-------------cccccchhhhhhhhH--
Q psy14534 19 LKTKHHLEKEQHVINHKMKTLQAINEEILQRISHLETSSQTNV--KTLFN-------------ITKQISGVEHLHSSM-- 81 (423)
Q Consensus 19 ~~~~~~le~~~~~~~~~~~~l~~~~~~~~~r~~~~e~~~~~l~--~~~~n-------------~s~q~~~~~k~~~s~-- 81 (423)
.+.+.+|.-....+..++..|+..+..+...+..+.....+|. +..-+ +.--+...||+==++
T Consensus 5 ~~~le~l~a~lq~l~~qie~L~~~i~~l~~~~~e~~~~~~tl~~lk~~~~g~E~LVpvGag~fv~~kv~~~~kviV~iGs 84 (145)
T COG1730 5 QQELEELAAQLQILQSQIESLQAQIAALNAAISELQTAIETLENLKGAGEGKEVLVPVGAGLFVKAKVKDMDKVIVSIGS 84 (145)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCceEEEEeccCceEEEEcCC
Q ss_pred -HHHHHHHHHHHHHhhhcchhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhHHHHHH
Q psy14534 82 -MELLESIETIENKVDYNLPTIQREISKLEFGVAQINSTLQVVNETRESDANYLKS 136 (423)
Q Consensus 82 -~el~e~ve~~~~~~d~~ip~~~~EI~e~e~~l~q~ts~l~~~~Ee~~n~s~~i~s 136 (423)
.=.-.+.+.--+..++.+.++.+.|.+++.++.+++.....+..+...+......
T Consensus 85 g~~ae~~~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q~~~~ 140 (145)
T COG1730 85 GYYAEKSADEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQKQAA 140 (145)
T ss_pred ceeeeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 492
>KOG1655|consensus
Probab=27.79 E-value=5.8e+02 Score=24.90 Aligned_cols=130 Identities=11% Similarity=0.150 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhccccccchhhhhhhhHHHHHHHHHHHHHHhhhcchhHHHHHHhhhh
Q psy14534 32 INHKMKTLQAINEEILQRISHLETSSQTNVKTLFNITKQISGVEHLHSSMMELLESIETIENKVDYNLPTIQREISKLEF 111 (423)
Q Consensus 32 ~~~~~~~l~~~~~~~~~r~~~~e~~~~~l~~~~~n~s~q~~~~~k~~~s~~el~e~ve~~~~~~d~~ip~~~~EI~e~e~ 111 (423)
|..-...+.++..-++++|+.|+.++.-+...|.|. |.=-...-|+..-|++|......|+-. .
T Consensus 17 L~dai~~v~~r~dSve~KIskLDaeL~k~~~Qi~k~-R~gpaq~~~KqrAlrVLkQKK~yE~q~---------------d 80 (218)
T KOG1655|consen 17 LQDAIDSVNKRSDSVEKKISKLDAELCKYKDQIKKT-RPGPAQNALKQRALRVLKQKKMYENQK---------------D 80 (218)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhc-CCCcchhHHHHHHHHHHHHHHHHHHHH---------------H
Q ss_pred hhhhhhhhh---hhhhhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy14534 112 GVAQINSTL---QVVNETRESDANYLKSTVSTLATLQEKVEANNIIMQALSDANYLKSTVSTLATLQEKV 178 (423)
Q Consensus 112 ~l~q~ts~l---~~~~Ee~~n~s~~i~s~~~sis~lqek~~~~~kv~~le~Q~~~I~~l~~~v~~~~~ql 178 (423)
.|.+-+=.+ +...|-+++....|++|-..+..++.....-++ .+|+-=.+.+.++...-.+++.-|
T Consensus 81 ~L~~QsfNMeQa~~t~e~LKdtq~Tv~AmK~~~k~mK~~ykkvnI-d~IedlQDem~Dlmd~a~EiQE~L 149 (218)
T KOG1655|consen 81 SLDQQSFNMEQANFTAESLKDTQATVAAMKDTNKEMKKQYKKVNI-DKIEDLQDEMEDLMDQADEIQEVL 149 (218)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCH-HHHHHHHHHHHHHHHHHHHHHHHH
No 493
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=27.77 E-value=7.1e+02 Score=25.86 Aligned_cols=138 Identities=14% Similarity=0.185 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhccccccchhhhhhhhHHHHHHHHHHHHHHhhhcchhH
Q psy14534 23 HHLEKEQHVINHKMKTLQAINEEILQRISHLETSSQTNVKTLFNITKQISGVEHLHSSMMELLESIETIENKVDYNLPTI 102 (423)
Q Consensus 23 ~~le~~~~~~~~~~~~l~~~~~~~~~r~~~~e~~~~~l~~~~~n~s~q~~~~~k~~~s~~el~e~ve~~~~~~d~~ip~~ 102 (423)
.+||.-+.+ +++++--.+.+.+|-..+....+.+.-...+.-.+-....+=..++-+||.+..-=-.+...-+.++
T Consensus 16 ~eLe~cq~E----rDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L~~Ev~~L 91 (319)
T PF09789_consen 16 QELEKCQSE----RDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKKLKEEVEEL 91 (319)
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhhhhhhh--------------------------hhhhhhhhhhhhhhhhHHHHHHHHhhhHHHHHHHHH-HHHHH
Q psy14534 103 QREISKLEFGVA--------------------------QINSTLQVVNETRESDANYLKSTVSTLATLQEKVEA-NNIIM 155 (423)
Q Consensus 103 ~~EI~e~e~~l~--------------------------q~ts~l~~~~Ee~~n~s~~i~s~~~sis~lqek~~~-~~kv~ 155 (423)
+..+.++.-..+ +...+|-..++.+..+...+++.......+-..++. +.|+.
T Consensus 92 rqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~ 171 (319)
T PF09789_consen 92 RQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAH 171 (319)
T ss_pred HHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhhHHHH
Q psy14534 156 QALSDANYL 164 (423)
Q Consensus 156 ~le~Q~~~I 164 (423)
.+..+++.|
T Consensus 172 RLN~ELn~~ 180 (319)
T PF09789_consen 172 RLNHELNYI 180 (319)
T ss_pred HHHHHHHHH
No 494
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=27.74 E-value=2.8e+02 Score=30.81 Aligned_cols=86 Identities=16% Similarity=0.164 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhcchhH--HHHHHhhhhhhhhhhhh-------hhhhhhhhhhhHHHHHHHHhhhHHHHHHHHHHHH
Q psy14534 83 ELLESIETIENKVDYNLPTI--QREISKLEFGVAQINST-------LQVVNETRESDANYLKSTVSTLATLQEKVEANNI 153 (423)
Q Consensus 83 el~e~ve~~~~~~d~~ip~~--~~EI~e~e~~l~q~ts~-------l~~~~Ee~~n~s~~i~s~~~sis~lqek~~~~~k 153 (423)
+|-.+++..+.+.+.-+.++ +.+|++.+..++.+... +....+|+..++.+++++...+ -.-+-+++.-
T Consensus 168 ~~~~~~k~~~~~w~~~~~~Lp~~~~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~~~~~i--~~~~~~l~~~ 245 (555)
T TIGR03545 168 EIEKSLKAMQQKWKKRKKDLPNKQDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKADKQKI--KSAKNDLQND 245 (555)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHh
Q ss_pred HHHHHhhHHHHHHHHHH
Q psy14534 154 IMQALSDANYLKSTVST 170 (423)
Q Consensus 154 v~~le~Q~~~I~~l~~~ 170 (423)
..++.+|...|+..-+.
T Consensus 246 ~~~~~~~~~~lk~ap~~ 262 (555)
T TIGR03545 246 KKQLKADLAELKKAPQN 262 (555)
T ss_pred HHHHHHHHHHHHhccHh
No 495
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=27.68 E-value=6.1e+02 Score=25.09 Aligned_cols=128 Identities=9% Similarity=0.115 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhccccccchhhhhhhhHHHHHHHHHHHHHHhhhcchhHHH
Q psy14534 25 LEKEQHVINHKMKTLQAINEEILQRISHLETSSQTNVKTLFNITKQISGVEHLHSSMMELLESIETIENKVDYNLPTIQR 104 (423)
Q Consensus 25 le~~~~~~~~~~~~l~~~~~~~~~r~~~~e~~~~~l~~~~~n~s~q~~~~~k~~~s~~el~e~ve~~~~~~d~~ip~~~~ 104 (423)
|+.-......-+..+++..+.+++++.. ...+....+++.+.+++..+.+.-..+.++++.+.. .......-++.+.
T Consensus 140 l~~ivd~~~~~l~~l~~~~~~le~~l~~--~~~~~~l~~l~~l~~~l~~l~~~l~~~~~vl~~l~~-~~~~~~~~~~~~~ 216 (318)
T TIGR00383 140 FDAIIDSYFPLLENIEDELEELEDEIIS--GPTSTLMDEILSLRTELLALRRSLWPLRDVLNFLLR-KTHLPIQTEEVRE 216 (318)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCcccCCHHHHH
Q ss_pred HHHhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy14534 105 EISKLEFGVAQINSTLQVVNETRESDANYLKSTVSTLATLQEKVEANNIIMQALSDANYLKSTVSTLATL 174 (423)
Q Consensus 105 EI~e~e~~l~q~ts~l~~~~Ee~~n~s~~i~s~~~sis~lqek~~~~~kv~~le~Q~~~I~~l~~~v~~~ 174 (423)
-+...-.++.+........+|.+..+.....+++..- .+.+-+.+..++..
T Consensus 217 ~~~dv~~~~~~l~~~~~~~~e~l~~l~d~~~~~~s~~-------------------~N~~mk~LTvvt~I 267 (318)
T TIGR00383 217 YLRDIYDHILSLLEMIETYRELLSSLMDLYLSLVNNK-------------------MNEIMKILTVVSTI 267 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHH
No 496
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=27.68 E-value=1.1e+03 Score=28.03 Aligned_cols=165 Identities=13% Similarity=0.145 Sum_probs=0.0
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHH-HHHHhhhhhhhhhHHHHHHhhccccccchhhhhhhhHHHHHHHHHH-HHHHhh
Q psy14534 19 LKTKHHLEKEQHVINHKMKTLQAINE-EILQRISHLETSSQTNVKTLFNITKQISGVEHLHSSMMELLESIET-IENKVD 96 (423)
Q Consensus 19 ~~~~~~le~~~~~~~~~~~~l~~~~~-~~~~r~~~~e~~~~~l~~~~~n~s~q~~~~~k~~~s~~el~e~ve~-~~~~~d 96 (423)
.++-..+|....+.++.+.+|++..+ +..+-..-+|-..--...+-+-+-+....+-..-.-|..+...+++ -..+..
T Consensus 682 Ee~r~~le~~~~~t~El~~~L~ae~~~~~kei~dLfd~~~~~~ed~F~e~A~~~qq~~q~~srl~~~~aql~~v~~~~~e 761 (984)
T COG4717 682 EEARLALEGNIERTKELNDELRAELELHRKEILDLFDCGTADTEDAFREAAREEQQLTQRESRLESLEAQLEGVAAEAYE 761 (984)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHH
Q ss_pred hcchhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q psy14534 97 YNLPTIQREISKLEFGVAQINSTLQVVNETRESDANYLKSTVSTLATLQEKVEANNIIMQALSDANYLKSTVSTLATLQE 176 (423)
Q Consensus 97 ~~ip~~~~EI~e~e~~l~q~ts~l~~~~Ee~~n~s~~i~s~~~sis~lqek~~~~~kv~~le~Q~~~I~~l~~~v~~~~~ 176 (423)
=.-+...+|++ |+++....--+....||+.++..+|.++...| +.++.-..+..+..+-..++.-+...+.---
T Consensus 762 L~~~~~~~~~~--e~E~~~lEe~~d~~~ee~~el~a~v~~~~~qi----~~lE~g~~~a~lr~~~~slk~~l~e~ar~Wa 835 (984)
T COG4717 762 LSASLDQRELK--EEELALLEEAIDALDEEVEELHAQVAALSRQI----AQLEGGGTVAELRQRRESLKEDLEEKARKWA 835 (984)
T ss_pred hhhhhhhhhhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhcCChHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhH-HHHHHHh
Q psy14534 177 KVEANN-IIMQALR 189 (423)
Q Consensus 177 ql~~q~-~l~~kl~ 189 (423)
.|.... .+.+.|+
T Consensus 836 sl~~~~~vl~e~l~ 849 (984)
T COG4717 836 SLRLAVQVLEEALR 849 (984)
T ss_pred HHHHHHHHHHHHHH
No 497
>PF07426 Dynactin_p22: Dynactin subunit p22; InterPro: IPR009991 This family contains p22, the smallest subunit of dynactin, a complex that binds to cytoplasmic dynein and is a required activator for cytoplasmic dynein-mediated vesicular transport. Dynactin localises to the cleavage furrow and to the midbodies of dividing cells, suggesting that it may function in cytokinesis [].
Probab=27.66 E-value=5.2e+02 Score=24.27 Aligned_cols=144 Identities=13% Similarity=0.206 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhh----hhhhhhhHHHHHHhhccccccchhhhhhhhHHHHHHHHHHHHHHhh------hcch-hHHH
Q psy14534 36 MKTLQAINEEILQRI----SHLETSSQTNVKTLFNITKQISGVEHLHSSMMELLESIETIENKVD------YNLP-TIQR 104 (423)
Q Consensus 36 ~~~l~~~~~~~~~r~----~~~e~~~~~l~~~~~n~s~q~~~~~k~~~s~~el~e~ve~~~~~~d------~~ip-~~~~ 104 (423)
++.||++.++++.|| ...+-....+...+..+..-|...=.=++++..+++.++.|+.-.| ..+| ..+.
T Consensus 7 l~~Le~Ri~~LE~~v~G~~~~~~~~~~~v~~~L~~~~~~L~~~~s~re~i~~l~k~~~eL~~YLDP~~~e~~~l~~~~K~ 86 (174)
T PF07426_consen 7 LDILEKRIEELERRVYGENGSKEGQPEKVIDSLLSVQSALNSAASKRERIKELFKRIEELNKYLDPNFIEEIQLPDSAKL 86 (174)
T ss_pred HHHHHHHHHHHHHHHcCCCccccCCchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcCchhhhhcccchHHHH
Q ss_pred H-HHhhhhhhhhhhhhh---hhhhhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHHHH
Q psy14534 105 E-ISKLEFGVAQINSTL---QVVNETRESDANYLKSTVSTLATLQEKVEANNIIM-QALSDANYLKSTVSTLATLQEKVE 179 (423)
Q Consensus 105 E-I~e~e~~l~q~ts~l---~~~~Ee~~n~s~~i~s~~~sis~lqek~~~~~kv~-~le~Q~~~I~~l~~~v~~~~~ql~ 179 (423)
+ |=-.|..++++...| +.+.+=+..-+ |.+.-+-.++|+.-...+-+.. +.++....+..++++.+..-..|-
T Consensus 87 ~~ILa~e~~i~~~~~~Leki~~L~pvL~se~--i~~vp~~~~kL~~L~~~~~~Q~e~~~~ls~~~~~Ll~~YN~ii~~lS 164 (174)
T PF07426_consen 87 QIILAEEDEIKSTAELLEKIKSLEPVLDSES--IRNVPELCDKLQKLSQIHLEQQEESEELSEEVQELLQQYNKIILLLS 164 (174)
T ss_pred HHHHHccHHHHHHHHHHHHHHHhhhhcCcHH--HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred Hh
Q psy14534 180 AN 181 (423)
Q Consensus 180 ~q 181 (423)
.+
T Consensus 165 k~ 166 (174)
T PF07426_consen 165 KQ 166 (174)
T ss_pred HH
No 498
>COG1463 Ttg2C ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=27.63 E-value=3.9e+02 Score=27.50 Aligned_cols=113 Identities=12% Similarity=0.100 Sum_probs=0.0
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhccccccchhhhhhhhHHHHHHHHHHHHHHhhh
Q psy14534 18 FLKTKHHLEKEQHVINHKMKTLQAINEEILQRISHLETSSQTNVKTLFNITKQISGVEHLHSSMMELLESIETIENKVDY 97 (423)
Q Consensus 18 ~~~~~~~le~~~~~~~~~~~~l~~~~~~~~~r~~~~e~~~~~l~~~~~n~s~q~~~~~k~~~s~~el~e~ve~~~~~~d~ 97 (423)
|.+.|.+++.--..++.....+......+..-+..+......+.....|+..=++.+......+..+++.+..+-..+..
T Consensus 178 l~~~l~~l~~~~~~ln~~~~~i~~~i~~l~~~~~~~~~~~~~l~~~~~~l~~l~~~~~~~~~~l~~~l~~~~~~~~~~~~ 257 (359)
T COG1463 178 LNALLDNLAQFTDALNARDGDIGALIANLNQLLDSLAAASDQLDRLLDNLATLTAALAARRDALDDALAALSALAATVND 257 (359)
T ss_pred HHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHH
Q ss_pred cchhHHHHHHhhhhhhhhhhhhhhhhhhhhhhh
Q psy14534 98 NLPTIQREISKLEFGVAQINSTLQVVNETRESD 130 (423)
Q Consensus 98 ~ip~~~~EI~e~e~~l~q~ts~l~~~~Ee~~n~ 130 (423)
.+.+.+.-+-..=.++...+..+..-..++..+
T Consensus 258 ll~~~r~~l~~~l~~l~~~~~~~~~~~~~~~~l 290 (359)
T COG1463 258 LLAENRPNLNQALANLRPLATLLVDYLPGLEQL 290 (359)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHHhhHHHHHHH
No 499
>PLN02320 seryl-tRNA synthetase
Probab=27.59 E-value=2.4e+02 Score=30.98 Aligned_cols=65 Identities=14% Similarity=0.130 Sum_probs=0.0
Q ss_pred HHHhhhhhhhhhhhhhhhhhhhhhhhHHHHHHH-----HhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q psy14534 105 EISKLEFGVAQINSTLQVVNETRESDANYLKST-----VSTLATLQEKVEANNIIMQALSDANYLKSTVSTL 171 (423)
Q Consensus 105 EI~e~e~~l~q~ts~l~~~~Ee~~n~s~~i~s~-----~~sis~lqek~~~~~kv~~le~Q~~~I~~l~~~v 171 (423)
+|-++....++...++..++.|.+.++++|..+ .+.+ +++-.++.+++..++++...+...+..+
T Consensus 94 ~l~~ld~~~r~~~~~~~~lr~ern~~sk~i~~~~~~~~~~~l--~~~~k~lk~~i~~le~~~~~~~~~l~~~ 163 (502)
T PLN02320 94 LVLELYENMLALQKEVERLRAERNAVANKMKGKLEPSERQAL--VEEGKNLKEGLVTLEEDLVKLTDELQLE 163 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 500
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=27.53 E-value=20 Score=41.43 Aligned_cols=171 Identities=15% Similarity=0.181 Sum_probs=0.0
Q ss_pred cccchhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhccccccchhhhhhhhHHHHHHHHHH
Q psy14534 11 RYRNGKLFLKTKHHLEKEQHVINHKMKTLQAINEEILQRISHLETSSQTNVKTLFNITKQISGVEHLHSSMMELLESIET 90 (423)
Q Consensus 11 ~~r~~~~~~~~~~~le~~~~~~~~~~~~l~~~~~~~~~r~~~~e~~~~~l~~~~~n~s~q~~~~~k~~~s~~el~e~ve~ 90 (423)
|.+...-....+..||-.-+.+.+++..++...+....++.+||..-.+|..++-.++.++ +...-....++.
T Consensus 305 k~K~e~e~~~~~EelEeaKKkL~~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~eL-------e~~~~~~~~LeK 377 (859)
T PF01576_consen 305 KKKYEEEAEQRTEELEEAKKKLERKLQELQEQLEEANAKVSSLEKTKKRLQGELEDLTSEL-------EKAQAAAAELEK 377 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Q ss_pred HHHHhhhcchhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhhHHHHHHHHH-HHHHHHHHhhHHHHHHHHH
Q psy14534 91 IENKVDYNLPTIQREISKLEFGVAQINSTLQVVNETRESDANYLKSTVSTLATLQEKVEA-NNIIMQALSDANYLKSTVS 169 (423)
Q Consensus 91 ~~~~~d~~ip~~~~EI~e~e~~l~q~ts~l~~~~Ee~~n~s~~i~s~~~sis~lqek~~~-~~kv~~le~Q~~~I~~l~~ 169 (423)
=..+||+.+.+.+....++..++...........-++-.+...+....+.+..+...... +..+..+..|...-..-+.
T Consensus 378 Kqr~fDk~l~e~k~~~~~~~~e~d~~q~e~r~~~te~~~Lk~~lee~~e~~e~lere~k~L~~El~dl~~q~~~~~k~v~ 457 (859)
T PF01576_consen 378 KQRKFDKQLAEWKAKVEELQAERDAAQREARELETELFKLKNELEELQEQLEELERENKQLQDELEDLTSQLDDAGKSVH 457 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhccchH
Q ss_pred HHHHHHHHHHHhH-HHHHHH
Q psy14534 170 TLATLQEKVEANN-IIMQAL 188 (423)
Q Consensus 170 ~v~~~~~ql~~q~-~l~~kl 188 (423)
.+....+.|.... .+...|
T Consensus 458 eLek~kr~LE~e~~El~~~l 477 (859)
T PF01576_consen 458 ELEKAKRRLEQEKEELQEQL 477 (859)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHHHHHHHHHHH
Done!