Query psy14534
Match_columns 423
No_of_seqs 218 out of 1301
Neff 5.3
Searched_HMMs 29240
Date Fri Aug 16 22:20:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14534.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14534hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ghg_B Fibrinogen beta chain; 100.0 2E-73 6.9E-78 584.3 22.1 190 231-421 207-458 (461)
2 2wnp_F Ficolin-1; glycoprotein 100.0 4E-74 1.4E-78 544.8 14.3 192 228-420 2-217 (217)
3 3ghg_C Fibrinogen gamma chain; 100.0 1.5E-73 5E-78 582.1 18.4 191 230-421 148-390 (411)
4 1m1j_B Fibrinogen beta chain; 100.0 1.7E-72 5.7E-77 582.6 24.0 190 231-421 212-462 (464)
5 1lwu_B Fibrinogen beta chain; 100.0 5.5E-73 1.9E-77 565.3 17.6 190 231-421 72-322 (323)
6 1lwu_C Fibrinogen gamma chain; 100.0 1.5E-72 5.1E-77 561.5 20.6 191 230-421 71-310 (323)
7 2d39_A Ficolin-1; innate immun 100.0 4.3E-73 1.5E-77 543.4 14.8 190 231-421 2-215 (237)
8 1m1j_C Fibrinogen gamma chain; 100.0 4.3E-72 1.5E-76 573.5 22.8 191 230-421 148-390 (409)
9 2j5z_A Ficolin-3; hydroxylatio 100.0 5.6E-73 1.9E-77 538.3 13.2 190 228-418 8-221 (221)
10 1z3u_A Angiopoietin-2, ANG-2; 100.0 6.3E-73 2.2E-77 537.0 11.5 183 237-420 14-215 (217)
11 1fzc_C Fibrin; blood coagulati 100.0 1.2E-72 4.2E-77 561.3 13.8 191 230-421 61-303 (319)
12 1fzc_B Fibrin; blood coagulati 100.0 2.4E-72 8.2E-77 562.0 15.3 190 231-421 74-325 (328)
13 2fib_A Fibrinogen; fibrinogen, 100.0 9.5E-72 3.3E-76 543.3 10.4 191 230-421 6-248 (269)
14 1jc9_A Techylectin-5A; fibrino 100.0 1.1E-70 3.8E-75 536.1 11.1 191 230-421 44-263 (269)
15 1fzd_A Fibrinogen-420; blood c 100.0 3.7E-67 1.3E-71 492.4 10.3 166 254-422 4-200 (201)
16 1c1g_A Tropomyosin; contractIl 96.6 0.39 1.3E-05 43.2 20.8 8 49-56 91-98 (284)
17 2dfs_A Myosin-5A; myosin-V, in 95.5 0.067 2.3E-06 61.0 12.0 43 99-141 986-1028(1080)
18 1i84_S Smooth muscle myosin he 95.5 0.028 9.6E-07 64.5 8.7 43 21-63 858-900 (1184)
19 1i84_S Smooth muscle myosin he 95.4 0.024 8.3E-07 65.0 8.0 38 31-68 861-898 (1184)
20 3na7_A HP0958; flagellar bioge 95.1 1.7 5.7E-05 41.3 18.5 7 250-256 223-229 (256)
21 2dfs_A Myosin-5A; myosin-V, in 94.3 0.37 1.3E-05 55.0 13.5 29 102-130 982-1010(1080)
22 3na7_A HP0958; flagellar bioge 93.2 2.2 7.5E-05 40.4 15.0 111 28-141 19-134 (256)
23 3oja_A Leucine-rich immune mol 91.9 1.6 5.6E-05 44.4 13.0 43 74-116 412-454 (487)
24 3oja_B Anopheles plasmodium-re 91.6 1 3.5E-05 46.8 11.4 21 102-122 507-527 (597)
25 3vkg_A Dynein heavy chain, cyt 88.9 12 0.0004 47.6 18.8 38 102-139 2012-2049(3245)
26 4ae2_A Procollagen III, collag 88.4 0.14 4.7E-06 49.1 1.3 30 231-260 48-94 (256)
27 2ocy_A RAB guanine nucleotide 87.9 14 0.00048 32.9 14.0 57 117-178 78-138 (154)
28 1deq_A Fibrinogen (alpha chain 87.6 4 0.00014 41.3 11.3 26 16-41 56-81 (390)
29 3vkg_A Dynein heavy chain, cyt 86.3 17 0.00059 46.1 18.1 39 111-149 2014-2052(3245)
30 3o0z_A RHO-associated protein 85.7 13 0.00045 33.6 12.7 38 115-152 94-131 (168)
31 3ghg_A Fibrinogen alpha chain; 85.1 3.8 0.00013 43.2 9.9 36 15-50 52-87 (562)
32 2fxo_A Myosin heavy chain, car 85.1 11 0.00037 32.2 11.5 45 27-71 13-57 (129)
33 3ghg_A Fibrinogen alpha chain; 85.0 6.7 0.00023 41.3 11.7 11 286-296 421-431 (562)
34 2jee_A YIIU; FTSZ, septum, coi 84.4 2.2 7.6E-05 34.3 6.2 39 83-122 6-45 (81)
35 3o0z_A RHO-associated protein 79.8 35 0.0012 30.8 15.3 15 81-95 50-64 (168)
36 2efr_A General control protein 77.9 37 0.0013 30.2 14.4 34 39-72 26-59 (155)
37 3thf_A Protein shroom; coiled- 76.5 47 0.0016 30.5 15.2 81 84-167 99-184 (190)
38 2e7s_A RAB guanine nucleotide 75.3 4.8 0.00016 35.3 5.8 48 118-167 67-118 (135)
39 3frt_A Charged multivesicular 75.2 9.1 0.00031 35.9 8.2 27 13-39 14-40 (218)
40 3hnw_A Uncharacterized protein 74.6 38 0.0013 29.4 11.5 14 82-95 58-71 (138)
41 1m1j_C Fibrinogen gamma chain; 72.5 17 0.00058 37.1 10.0 16 286-308 263-278 (409)
42 1l8d_A DNA double-strand break 71.7 4 0.00014 33.5 4.3 18 22-39 5-22 (112)
43 2yko_A LINE-1 ORF1P; RNA-bindi 66.5 10 0.00034 36.1 6.3 87 18-106 4-90 (233)
44 3cvf_A Homer-3, homer protein 66.4 5.7 0.00019 31.7 3.9 39 24-62 3-41 (79)
45 3htk_A Structural maintenance 66.0 14 0.00046 27.1 5.8 36 100-135 22-57 (60)
46 3s4r_A Vimentin; alpha-helix, 65.9 9.7 0.00033 31.0 5.4 68 45-128 20-87 (93)
47 3tnu_B Keratin, type II cytosk 65.8 52 0.0018 27.8 10.3 33 150-182 80-112 (129)
48 3q8t_A Beclin-1; autophagy, AT 65.7 46 0.0016 27.1 9.5 84 16-102 7-90 (96)
49 1m1j_A Fibrinogen alpha subuni 64.8 72 0.0025 33.1 12.6 22 93-114 61-82 (491)
50 3u1c_A Tropomyosin alpha-1 cha 64.3 47 0.0016 27.1 9.4 34 28-61 3-36 (101)
51 2zqm_A Prefoldin beta subunit 62.8 10 0.00035 31.0 5.1 37 101-137 74-110 (117)
52 1ic2_A Tropomyosin alpha chain 62.6 45 0.0015 26.0 8.6 69 22-93 8-76 (81)
53 3tnu_A Keratin, type I cytoske 62.5 49 0.0017 28.1 9.5 33 150-182 82-114 (131)
54 1gqe_A Release factor 2, RF2; 62.4 44 0.0015 33.6 10.5 18 18-35 7-24 (365)
55 3u59_A Tropomyosin beta chain; 62.2 47 0.0016 27.0 9.0 34 28-61 3-36 (101)
56 1m1j_B Fibrinogen beta chain; 62.0 54 0.0018 34.0 11.3 16 286-308 331-346 (464)
57 2fic_A Bridging integrator 1; 61.9 96 0.0033 28.3 18.3 49 21-69 53-101 (251)
58 3mq9_A Bone marrow stromal ant 61.9 69 0.0024 32.1 12.1 18 157-174 445-462 (471)
59 2v71_A Nuclear distribution pr 61.7 29 0.001 31.8 8.3 25 17-41 46-70 (189)
60 3nmd_A CGMP dependent protein 61.3 21 0.00071 28.0 6.2 43 22-64 21-63 (72)
61 2ch7_A Methyl-accepting chemot 60.7 1.1E+02 0.0037 28.5 14.4 20 20-39 124-143 (309)
62 3r84_A Mediator of RNA polymer 60.3 17 0.00058 29.4 5.7 31 78-115 46-76 (86)
63 3mq9_A Bone marrow stromal ant 59.2 30 0.001 34.7 8.9 30 100-129 439-468 (471)
64 1kd8_A GABH AIV, GCN4 acid bas 57.7 7.3 0.00025 26.6 2.6 30 35-64 2-31 (36)
65 3hnw_A Uncharacterized protein 56.9 92 0.0031 26.9 10.3 14 103-116 88-101 (138)
66 3a7p_A Autophagy protein 16; c 56.7 71 0.0024 28.4 9.6 15 75-89 38-52 (152)
67 1kd8_B GABH BLL, GCN4 acid bas 56.6 11 0.00038 25.7 3.4 30 35-64 2-31 (36)
68 2eqb_B RAB guanine nucleotide 56.3 84 0.0029 25.9 10.5 50 17-66 9-65 (97)
69 4dci_A Uncharacterized protein 56.1 48 0.0016 29.4 8.4 33 89-121 28-60 (150)
70 2pnv_A Small conductance calci 55.5 17 0.00057 25.8 4.3 38 28-65 3-40 (43)
71 3he5_B Synzip2; heterodimeric 55.4 37 0.0013 24.1 6.1 42 15-56 5-46 (52)
72 4etp_A Kinesin-like protein KA 54.7 21 0.00072 36.1 6.7 51 18-68 8-58 (403)
73 2pih_A Protein YMCA; regulate 54.7 1.1E+02 0.0036 26.6 11.5 92 80-172 5-106 (151)
74 2fxo_A Myosin heavy chain, car 54.0 96 0.0033 26.2 9.9 43 20-62 13-55 (129)
75 4gwp_A Mediator of RNA polymer 53.7 16 0.00054 31.1 4.7 27 81-114 52-78 (115)
76 3a7o_A Autophagy protein 16; c 53.2 49 0.0017 25.8 7.0 52 17-68 22-73 (75)
77 3ls0_A SLL1638 protein, PSBQ; 53.1 61 0.0021 28.2 8.4 25 29-53 22-46 (133)
78 2xzr_A Immunoglobulin-binding 52.8 98 0.0033 25.6 11.2 57 111-167 48-105 (114)
79 3oja_A Leucine-rich immune mol 52.2 1.2E+02 0.0042 30.4 12.1 11 131-141 434-444 (487)
80 2w83_C C-JUN-amino-terminal ki 52.0 24 0.00082 28.0 5.1 41 19-59 36-76 (77)
81 3nvo_A Zinc transport protein 51.8 26 0.00089 32.3 6.5 21 37-57 158-178 (264)
82 2zdi_C Prefoldin subunit alpha 51.6 4.1 0.00014 35.5 0.8 9 79-87 40-48 (151)
83 1uo4_A General control protein 49.4 15 0.00052 24.7 3.1 29 35-63 2-30 (34)
84 3he5_A Synzip1; heterodimeric 49.4 58 0.002 22.9 6.2 42 23-64 6-47 (49)
85 2wq1_A General control protein 49.3 24 0.00081 23.6 4.0 28 36-63 2-29 (33)
86 3ck6_A Putative membrane trans 49.1 44 0.0015 30.6 7.6 21 36-56 146-166 (252)
87 2oqq_A Transcription factor HY 49.1 39 0.0013 23.8 5.2 27 36-62 12-38 (42)
88 4ev6_A Magnesium transport pro 48.5 1.9E+02 0.0066 27.8 12.5 32 42-73 172-208 (339)
89 3c3f_A Alpha/beta peptide with 47.9 19 0.00065 24.2 3.4 28 35-62 2-29 (34)
90 2r2v_A GCN4 leucine zipper; co 47.0 27 0.00091 23.5 4.0 28 36-63 3-30 (34)
91 2akf_A Coronin-1A; coiled coil 46.7 29 0.00099 22.7 4.0 26 32-57 4-29 (32)
92 2olt_A Hypothetical protein; s 46.6 1.6E+02 0.0055 26.4 15.1 79 15-95 16-100 (227)
93 2gd5_A Charged multivesicular 46.0 18 0.00061 32.4 4.1 65 18-82 12-81 (179)
94 1fxk_A Prefoldin; archaeal pro 45.3 27 0.00093 28.0 4.8 8 49-56 23-30 (107)
95 3fhn_A Protein transport prote 45.3 57 0.0019 35.6 8.6 107 18-137 15-133 (706)
96 3g67_A Methyl-accepting chemot 45.0 1.9E+02 0.0064 26.6 19.0 21 121-141 115-135 (213)
97 3a7o_A Autophagy protein 16; c 44.9 46 0.0016 26.0 5.6 28 126-153 19-46 (75)
98 3nmd_A CGMP dependent protein 44.6 34 0.0012 26.8 4.9 14 128-141 43-56 (72)
99 3t97_C Nuclear pore glycoprote 44.5 33 0.0011 26.2 4.8 41 19-59 18-58 (64)
100 1f5n_A Interferon-induced guan 43.9 1.5E+02 0.0053 31.4 11.6 13 96-108 479-491 (592)
101 3htk_A Structural maintenance 42.2 64 0.0022 23.3 6.0 52 19-70 4-55 (60)
102 3qh9_A Liprin-beta-2; coiled-c 42.2 93 0.0032 24.8 7.2 42 107-148 36-77 (81)
103 3lay_A Zinc resistance-associa 42.1 54 0.0018 29.6 6.7 14 48-61 26-39 (175)
104 4g2k_A General control protein 42.1 39 0.0013 29.0 5.3 60 36-95 16-76 (125)
105 2gd5_A Charged multivesicular 41.9 86 0.0029 27.8 8.0 28 14-41 15-42 (179)
106 3cve_A Homer protein homolog 1 41.5 43 0.0015 26.2 5.1 26 35-60 8-33 (72)
107 3uux_B Mitochondrial division 41.4 49 0.0017 31.5 6.5 75 37-111 152-226 (242)
108 1fxk_A Prefoldin; archaeal pro 41.2 74 0.0025 25.3 6.9 40 71-111 7-46 (107)
109 3frt_A Charged multivesicular 41.2 84 0.0029 29.3 8.0 67 16-82 10-81 (218)
110 1bf5_A Signal transducer and a 41.1 2.8E+02 0.0097 29.5 12.9 33 29-61 4-36 (575)
111 3ghg_B Fibrinogen beta chain; 40.2 1.4E+02 0.0049 30.9 10.2 14 369-382 405-418 (461)
112 3fx7_A Putative uncharacterize 39.8 1.2E+02 0.0042 24.7 7.8 75 32-112 11-85 (94)
113 3swy_A Cyclic nucleotide-gated 39.7 78 0.0027 22.6 5.8 38 18-55 3-44 (46)
114 4h22_A Leucine-rich repeat fli 39.6 99 0.0034 25.8 7.3 62 111-174 16-77 (103)
115 2yny_A General control protein 39.5 84 0.0029 26.3 6.9 36 37-72 2-37 (106)
116 3ghg_C Fibrinogen gamma chain; 39.4 65 0.0022 32.9 7.5 8 286-293 263-270 (411)
117 1wle_A Seryl-tRNA synthetase; 39.4 1.5E+02 0.005 30.9 10.4 35 103-137 69-103 (501)
118 2i1j_A Moesin; FERM, coiled-co 39.2 10 0.00036 40.1 1.7 25 145-169 504-528 (575)
119 2v71_A Nuclear distribution pr 39.0 2.3E+02 0.0078 25.9 14.1 44 90-133 42-85 (189)
120 3u06_A Protein claret segregat 38.9 54 0.0018 33.3 6.8 53 16-68 6-58 (412)
121 1gqe_A Release factor 2, RF2; 38.7 3.2E+02 0.011 27.4 15.6 37 77-115 7-43 (365)
122 3swf_A CGMP-gated cation chann 38.5 1.1E+02 0.0036 24.1 6.9 44 18-61 5-52 (74)
123 1m1j_A Fibrinogen alpha subuni 38.3 1.8E+02 0.0063 30.1 10.5 31 83-113 97-127 (491)
124 3m48_A General control protein 37.9 27 0.00094 23.4 2.9 27 36-62 2-28 (33)
125 2xzr_A Immunoglobulin-binding 37.8 1.7E+02 0.0059 24.1 10.9 17 23-39 2-18 (114)
126 1fio_A SSO1 protein; four heli 37.5 1.2E+02 0.0041 26.6 8.3 28 84-111 47-74 (196)
127 4g2k_A General control protein 36.8 1.1E+02 0.0039 26.1 7.4 40 78-121 13-52 (125)
128 2yo3_A General control protein 36.5 53 0.0018 31.7 5.9 47 17-63 213-259 (268)
129 3rrk_A V-type ATPase 116 kDa s 36.5 2.5E+02 0.0084 27.0 11.0 34 23-56 95-128 (357)
130 2hy6_A General control protein 36.4 34 0.0012 23.0 3.2 28 36-63 3-30 (34)
131 2eqb_B RAB guanine nucleotide 36.3 1.8E+02 0.0061 23.9 10.2 17 118-134 47-63 (97)
132 1go4_E MAD1 (mitotic arrest de 36.2 58 0.002 27.0 5.4 77 30-115 15-93 (100)
133 3euh_A Protein KICB, chromosom 36.0 1.7E+02 0.0058 29.9 9.7 64 76-148 159-222 (440)
134 2iub_A CORA, divalent cation t 35.8 2.4E+02 0.0083 27.4 10.9 14 43-56 197-210 (363)
135 2lw9_A Unconventionnal myosin- 35.7 38 0.0013 24.7 3.6 37 19-55 5-50 (51)
136 4emc_A Monopolin complex subun 35.6 49 0.0017 30.4 5.3 21 94-114 17-37 (190)
137 1l8d_A DNA double-strand break 35.6 1.7E+02 0.0058 23.4 9.5 10 23-32 13-22 (112)
138 3c3g_A Alpha/beta peptide with 35.2 53 0.0018 21.9 4.0 27 36-62 2-28 (33)
139 3ol1_A Vimentin; structural ge 34.9 2E+02 0.0068 24.0 9.3 36 92-127 15-50 (119)
140 2dq0_A Seryl-tRNA synthetase; 34.9 69 0.0024 32.9 7.0 29 45-73 35-63 (455)
141 2oqq_A Transcription factor HY 34.8 45 0.0015 23.5 3.8 31 35-65 4-34 (42)
142 2bni_A General control protein 34.7 33 0.0011 23.1 2.9 28 35-62 2-29 (34)
143 3a7p_A Autophagy protein 16; c 34.3 1.2E+02 0.0041 26.9 7.4 28 104-131 82-109 (152)
144 2jee_A YIIU; FTSZ, septum, coi 34.3 1.8E+02 0.006 23.2 8.6 23 73-95 7-29 (81)
145 1ses_A Seryl-tRNA synthetase; 34.2 93 0.0032 31.5 7.7 29 45-73 32-60 (421)
146 1t98_A KICB protein, chromosom 34.0 1.1E+02 0.0038 29.3 7.6 34 76-109 159-192 (287)
147 3qne_A Seryl-tRNA synthetase, 33.9 90 0.0031 32.5 7.7 34 103-136 32-65 (485)
148 2iaz_A Hypothetical protein SP 33.3 1.9E+02 0.0065 23.2 9.2 91 81-172 2-101 (113)
149 3rj1_A Mediator of RNA polymer 33.1 13 0.00043 32.4 0.9 70 45-114 21-94 (131)
150 2d4y_A HAP1, flagellar HOOK-as 32.4 3.5E+02 0.012 27.2 11.8 17 15-31 4-20 (463)
151 4dyl_A Tyrosine-protein kinase 32.4 1.5E+02 0.0052 29.5 8.9 81 115-195 306-396 (406)
152 3mq7_A Bone marrow stromal ant 32.1 57 0.0019 27.8 4.7 22 99-120 73-94 (121)
153 3s9g_A Protein hexim1; cyclin 31.8 1.4E+02 0.0047 24.7 6.9 42 24-65 41-82 (104)
154 1y1u_A Signal transducer and a 31.2 4E+02 0.014 28.4 12.2 25 35-59 20-44 (585)
155 1lwu_C Fibrinogen gamma chain; 31.0 48 0.0016 32.8 4.8 8 286-293 183-190 (323)
156 2lw1_A ABC transporter ATP-bin 30.9 1.1E+02 0.0036 24.2 6.1 24 43-66 24-47 (89)
157 2oxj_A Hybrid alpha/beta pepti 30.7 52 0.0018 22.1 3.4 26 36-61 3-28 (34)
158 1j8b_A YBAB; hypothetical prot 30.7 21 0.00072 29.9 1.9 81 31-117 12-95 (112)
159 3cve_A Homer protein homolog 1 30.6 75 0.0026 24.8 4.9 28 18-45 5-32 (72)
160 1qu7_A Methyl-accepting chemot 30.5 3E+02 0.01 25.2 10.0 114 56-172 109-223 (227)
161 3zx6_A HAMP, methyl-accepting 29.7 3.8E+02 0.013 25.7 15.4 130 35-174 35-165 (341)
162 4dvz_A Cytotoxicity-associated 29.6 1.7E+02 0.0058 30.1 8.4 25 89-113 411-435 (569)
163 2dq0_A Seryl-tRNA synthetase; 29.2 1.3E+02 0.0045 30.8 7.9 34 103-136 30-63 (455)
164 4abm_A Charged multivesicular 29.1 1.4E+02 0.0048 23.4 6.4 18 19-36 12-29 (79)
165 3u59_A Tropomyosin beta chain; 29.0 2.2E+02 0.0077 22.8 12.2 23 73-95 3-25 (101)
166 3zrx_A AF1503 protein, osmolar 29.0 1.8E+02 0.006 21.6 8.2 6 160-165 99-104 (115)
167 1uru_A Amphiphysin; endocytosi 29.0 3.1E+02 0.011 24.4 18.9 53 20-72 37-89 (244)
168 1gd2_E Transcription factor PA 28.9 85 0.0029 24.2 4.9 19 43-61 24-42 (70)
169 1ses_A Seryl-tRNA synthetase; 28.7 1.3E+02 0.0046 30.3 7.8 32 104-135 28-59 (421)
170 3uux_B Mitochondrial division 28.6 1.1E+02 0.0038 29.1 6.6 48 28-75 178-225 (242)
171 1ic2_A Tropomyosin alpha chain 28.4 2E+02 0.007 22.1 7.7 32 31-62 3-34 (81)
172 3qne_A Seryl-tRNA synthetase, 27.8 61 0.0021 33.8 5.1 29 45-73 37-65 (485)
173 1kd8_B GABH BLL, GCN4 acid bas 27.6 1E+02 0.0034 21.0 4.4 30 20-49 1-30 (36)
174 3cvf_A Homer-3, homer protein 27.6 54 0.0019 26.0 3.6 28 18-45 11-38 (79)
175 1dh3_A Transcription factor CR 27.3 1.4E+02 0.0049 21.6 5.7 33 39-71 20-52 (55)
176 2q12_A DIP13 alpha, DCC-intera 27.2 3.6E+02 0.012 24.6 19.8 53 17-69 18-70 (265)
177 2oxj_A Hybrid alpha/beta pepti 26.5 1E+02 0.0036 20.6 4.3 31 20-50 1-31 (34)
178 2ba2_A D12_ORF131, hypothetica 26.3 1.1E+02 0.0037 24.6 5.2 10 79-88 74-83 (85)
179 3i00_A HIP-I, huntingtin-inter 26.2 1.4E+02 0.0049 25.2 6.3 40 21-60 16-59 (120)
180 2olt_A Hypothetical protein; s 26.1 3.5E+02 0.012 24.1 12.1 19 18-36 51-69 (227)
181 1s94_A S-syntaxin; three helix 25.6 3.3E+02 0.011 23.6 11.3 61 80-141 37-97 (180)
182 4egw_A Magnesium transport pro 25.5 2.5E+02 0.0087 25.9 8.7 33 42-74 172-209 (280)
183 1bg1_A Protein (transcription 24.9 5E+02 0.017 27.7 11.6 34 28-61 14-47 (596)
184 3efg_A Protein SLYX homolog; x 24.9 63 0.0022 25.3 3.6 51 39-92 12-62 (78)
185 2v4h_A NF-kappa-B essential mo 24.8 2.1E+02 0.0072 24.0 6.9 31 81-115 26-56 (110)
186 1ci6_A Transcription factor AT 24.8 1.4E+02 0.0047 22.3 5.3 32 33-64 29-60 (63)
187 3haj_A Human pacsin2 F-BAR; pa 24.6 5.1E+02 0.017 26.1 11.4 35 340-385 436-470 (486)
188 2q13_A DCC-interacting protein 24.6 4.8E+02 0.017 25.2 13.3 53 17-69 18-70 (385)
189 2oee_A UPF0342 protein YHEA; M 24.6 2.2E+02 0.0074 23.0 7.1 88 83-171 4-100 (117)
190 2nrj_A HBL B protein; enteroto 24.4 2.4E+02 0.0081 27.7 8.5 75 73-149 80-154 (346)
191 3g67_A Methyl-accepting chemot 24.0 4.2E+02 0.014 24.2 18.9 23 98-120 113-135 (213)
192 2v66_B Nuclear distribution pr 23.8 3.2E+02 0.011 22.8 9.4 40 28-67 36-75 (111)
193 1ez3_A Syntaxin-1A; three heli 23.3 3E+02 0.01 22.2 12.5 60 81-141 7-66 (127)
194 3mq7_A Bone marrow stromal ant 23.2 1.4E+02 0.0046 25.5 5.5 32 103-134 70-101 (121)
195 3kpe_A Fusion glycoprotein F0; 23.2 1.2E+02 0.0041 22.1 4.5 37 112-148 5-41 (51)
196 2dnx_A Syntaxin-12; snare, HAB 23.2 3.1E+02 0.011 22.9 8.0 6 88-93 37-42 (130)
197 2zqm_A Prefoldin beta subunit 23.1 2.9E+02 0.0098 22.0 9.2 25 36-60 15-39 (117)
198 2i0n_A Class VII unconventiona 23.1 24 0.00082 26.9 0.8 36 338-384 16-51 (80)
199 3onj_A T-snare VTI1; helix, HA 23.0 2.9E+02 0.0099 22.0 9.7 53 117-169 33-90 (97)
200 3r6n_A Desmoplakin; spectrin r 22.8 5.6E+02 0.019 26.0 11.2 53 42-94 141-194 (450)
201 1z56_A Ligase interacting fact 22.6 78 0.0027 30.1 4.3 59 59-121 128-188 (246)
202 2b9c_A Striated-muscle alpha t 22.4 2.8E+02 0.0096 24.1 7.7 98 19-123 23-120 (147)
203 2dq3_A Seryl-tRNA synthetase; 22.3 1.5E+02 0.0051 30.0 6.8 86 84-171 7-101 (425)
204 1kd8_A GABH AIV, GCN4 acid bas 22.3 1.2E+02 0.0043 20.5 4.1 31 21-51 2-32 (36)
205 3c3f_A Alpha/beta peptide with 22.2 1.4E+02 0.0049 20.0 4.3 30 20-49 1-30 (34)
206 3sjb_C Golgi to ER traffic pro 22.1 1.1E+02 0.0038 25.0 4.6 61 50-110 25-87 (93)
207 2rjz_A PILO protein; structura 21.9 93 0.0032 26.9 4.5 26 116-141 13-38 (147)
208 3u1c_A Tropomyosin alpha-1 cha 21.9 3.2E+02 0.011 22.0 11.9 57 73-129 3-62 (101)
209 1gk7_A Vimentin; intermediate 21.7 1.5E+02 0.005 20.3 4.5 31 34-64 6-36 (39)
210 3bas_A Myosin heavy chain, str 21.4 3E+02 0.01 21.6 8.6 75 94-168 11-86 (89)
211 1awj_A ITK; transferase, regul 21.4 1.3E+02 0.0045 22.3 4.8 38 335-384 23-60 (77)
212 1wle_A Seryl-tRNA synthetase; 20.6 1.3E+02 0.0045 31.3 6.0 11 238-248 208-218 (501)
213 1hjb_A Ccaat/enhancer binding 20.4 2.6E+02 0.009 22.3 6.5 31 36-66 45-75 (87)
214 2b9c_A Striated-muscle alpha t 20.3 4.2E+02 0.014 22.9 12.8 43 99-141 82-124 (147)
215 3efg_A Protein SLYX homolog; x 20.1 2.7E+02 0.0091 21.7 6.4 22 18-39 12-33 (78)
216 4b4t_J 26S protease regulatory 20.0 93 0.0032 31.5 4.6 55 8-62 13-67 (405)
No 1
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=100.00 E-value=2e-73 Score=584.30 Aligned_cols=190 Identities=38% Similarity=0.737 Sum_probs=177.3
Q ss_pred CCCCCC-------CCCceEEEECCC-----cccccC----CceEEEEEecCCccccccChHhhccccCCCC---------
Q psy14534 231 LPNDCE-------GHSGLQLISLGR-----SVLCDE----HHWMTIQRRYNGMQEFNLKWTDYAQGFGSPE--------- 285 (423)
Q Consensus 231 ~p~dC~-------~~sGvY~I~p~~-----~v~Cd~----~GWTVIQrR~dGsv~FnR~W~eY~~GFG~~~--------- 285 (423)
.|+||. ..||+|+|+|.. .||||| +||||||||.||+|+|+|+|++|++|||++.
T Consensus 207 ~~rDC~di~~~G~~~SGvY~I~p~~~~~p~~VyCDm~t~GGGWTVIQrR~DGSvdF~R~W~eYk~GFG~~~~~~~g~~~~ 286 (461)
T 3ghg_B 207 SGKECEEIIRKGGETSEMYLIQPDSSVKPYRVYCDMNTENGGWTVIQNRQDGSVDFGRKWDPYKQGFGNVATNTDGKNYC 286 (461)
T ss_dssp EESSHHHHHHTTCCSCSEEEECSCSSSCCEEEEEECSTTSSCEEEEEEESSSCSCCCCCHHHHHHEEECCEECCTTCSSC
T ss_pred CCCCHHHHHhcCCCCCceEEEEeCCCCCeEEEEeeeccCCCceEEEEeecccccCCCCcHHHHhhccCCccccccccccc
Confidence 357887 579999999964 389998 5899999999999999999999999999998
Q ss_pred ---ccccccchhhhhhhccCcceEEEEEEecCCCeeEEEeeEEEEeccCCccccccccccCCCCCcc-------------
Q psy14534 286 ---SEFWIGNDALHRLTSQDNMSLRIEFVDIYGKAWYAEYDTFSVASESEGYRLNLSGYHGNASDAM------------- 349 (423)
Q Consensus 286 ---gEfWLGLe~ih~LT~~~~~~L~I~l~d~~g~~~~a~Y~~F~Vg~e~~~Y~L~lg~ysG~agDsl------------- 349 (423)
||||||||+||+||++++|+|+|+|+||+|+..||.|+.|.|++|+++|+|+||+|+|+|||+|
T Consensus 287 ~~~gEfWLGlE~IH~LT~~~~~eLrIeLeD~~G~~~yA~Y~~F~Vg~E~~~Y~L~lg~YsGtAGDsl~~g~~~~~g~~~~ 366 (461)
T 3ghg_B 287 GLPGEYWLGNDKISQLTRMGPTELLIEMEDWKGDKVKAHYGGFTVQNEANKYQISVNKYRGTAGNALMDGASQLMGENRT 366 (461)
T ss_dssp CEECCEEECHHHHHHHHHTSCEEEEEEECCTTSCCEEEEEEEEEECCGGGTTCEEEEEEESSSCCCTTTCCTTSCHHHHT
T ss_pred CCCCceEecchHHHHhhcCCceEEEEEEEecCCCEEEEEeCcccCCCccCCeEEEEccccCCchhhhccccccccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999998
Q ss_pred -CcCCCCCCCcccCCCCCC-----CCCCCCccCCcccccCCCcCCCCCCCC---------------CCceeccCCCCcee
Q psy14534 350 -TYQNNMKFSTIDRDNDLS-----NTHCASNYEGGWWFSHCLHANLNGKFN---------------LGLTWFHSEKNEWM 408 (423)
Q Consensus 350 -~~hng~~FST~DrDnD~~-----~~nCA~~~~GGWWy~~C~~sNLNG~Y~---------------~Gi~W~~~~~~~~~ 408 (423)
++|+||+|||+|+|||.+ ..|||..+.|||||+.|+.|||||+|. .||.|+.| ++.||
T Consensus 367 ~~~hng~~FST~DrDND~~~~~d~~~nCA~~~~GGWWy~~C~~sNLNG~Y~~g~~~~~~~~~~~~~~GI~W~~w-kG~~Y 445 (461)
T 3ghg_B 367 MTIHNGMFFSTYDRDNDGWLTSDPRKQCSKEDGGGWWYNRCHAANPNGRYYWGGQYTWDMAKHGTDDGVVWMNW-KGSWY 445 (461)
T ss_dssp TSCCTTCCCBBTTBCCCSCCCSCSSCCHHHHTCSCBCCSSBCSCBSSSCCCTTSBCCGGGSTTSSCCSSBCHHH-HCTTB
T ss_pred ccccCCCcccccccccccccccCccccccccCCCCCCCCCCCCCCCCCcccCCCCCcccccccCCCCceEeccC-CCCcc
Confidence 689999999999999975 379999999999999999999999985 38999987 45789
Q ss_pred eeceEEEEeeecC
Q psy14534 409 AVARSHMKIRRRQ 421 (423)
Q Consensus 409 slk~~~M~IRp~~ 421 (423)
|||+|+|||||+-
T Consensus 446 SLK~t~MkIRP~~ 458 (461)
T 3ghg_B 446 SMRKMSMKIRPFF 458 (461)
T ss_dssp CCSCEEEEEEECC
T ss_pred ceeeEEEEEeeCC
Confidence 9999999999964
No 2
>2wnp_F Ficolin-1; glycoprotein, innate immunity, fibrinogen-like domain, carbohydrate recognition, lectin, immune system; 1.21A {Homo sapiens} PDB: 2jhm_F 2jhl_F* 2jhh_C 2jhk_F* 2jhi_F* 2j3o_A* 2j3f_A* 2j1g_A* 2j0h_A* 2j0g_A* 2j0y_A* 2j2p_A* 2j3g_A* 2j3u_A* 2j61_B* 2j3f_D* 2j61_A*
Probab=100.00 E-value=4e-74 Score=544.79 Aligned_cols=192 Identities=40% Similarity=0.780 Sum_probs=181.1
Q ss_pred cCCCCCCCC-------CCCceEEEECCC----cccccC----CceEEEEEecCCccccccChHhhccccCCCCccccccc
Q psy14534 228 VGKLPNDCE-------GHSGLQLISLGR----SVLCDE----HHWMTIQRRYNGMQEFNLKWTDYAQGFGSPESEFWIGN 292 (423)
Q Consensus 228 ~~~~p~dC~-------~~sGvY~I~p~~----~v~Cd~----~GWTVIQrR~dGsv~FnR~W~eY~~GFG~~~gEfWLGL 292 (423)
|..+|+||. ..||||+|.|++ .||||| +||||||||.||+|+|+|+|++|++|||++.|||||||
T Consensus 2 c~~~~~sC~~i~~~g~~~sGvy~I~p~~~~~~~v~Cdm~t~ggGWtviqrR~dGsv~F~R~W~~Yk~GFG~~~gEfWLGl 81 (217)
T 2wnp_F 2 CATGPRNCKDLLDRGYFLSGWHTIYLPDCRPLTVLCDMDTDGGGWTVFQRRMDGSVDFYRDWAAYKQGFGSQLGEFWLGN 81 (217)
T ss_dssp TTTSCSSHHHHHHTTCCSCEEEEEECTTSCEEEEEEECSGGGSCEEEEEEESSSCSCCCCCHHHHHHCEECTTSCEECCH
T ss_pred CCCCccCHHHHHhcCCCCCeEEEEeCCCCCcEEEEEeeccCCCCeEEEEEEecCccccccCHHHHhhhcCCccccEEEec
Confidence 346788997 469999999975 389999 68999999999999999999999999999999999999
Q ss_pred hhhhhhhccCcceEEEEEEecCCCeeEEEeeEEEEeccCCcccccccccc-CCCCCccCcCCCCCCCcccCCCCCCCCCC
Q psy14534 293 DALHRLTSQDNMSLRIEFVDIYGKAWYAEYDTFSVASESEGYRLNLSGYH-GNASDAMTYQNNMKFSTIDRDNDLSNTHC 371 (423)
Q Consensus 293 e~ih~LT~~~~~~L~I~l~d~~g~~~~a~Y~~F~Vg~e~~~Y~L~lg~ys-G~agDsl~~hng~~FST~DrDnD~~~~nC 371 (423)
|+||+||++++|+|+|+|+||+|+..||+|+.|.|++|+++|+|+||+|+ |+|||+|++|+|++|||+|+|||.+..||
T Consensus 82 e~ih~LT~~~~~eL~i~L~d~~g~~~~A~Y~~F~V~~e~~~Y~L~lg~ys~G~agDsl~~h~g~~FST~D~DnD~~~~nC 161 (217)
T 2wnp_F 82 DNIHALTAQGSSELRVDLVDFEGNHQFAKYKSFKVADEAEKYKLVLGAFVGGSAGNSLTGHNNNFFSTKDQDNDVSSSNC 161 (217)
T ss_dssp HHHHHHHHSSCEEEEEEEECTTSCEEEEEESCEEECCGGGTTCEEECCEEECTTCCCSGGGTTCCCBBTTBCCSSSSSCH
T ss_pred cceeeccccceEEEEEEEEcCCCCEEEEEEeeeecCCcccCeEEeeccccCCCCCcccccccCCEEeccCCCCCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999 99999999999999999999999988999
Q ss_pred CCccCCcccccCCCcCCCCCCCC--------CCceeccCCCCceeeeceEEEEeeec
Q psy14534 372 ASNYEGGWWFSHCLHANLNGKFN--------LGLTWFHSEKNEWMAVARSHMKIRRR 420 (423)
Q Consensus 372 A~~~~GGWWy~~C~~sNLNG~Y~--------~Gi~W~~~~~~~~~slk~~~M~IRp~ 420 (423)
|..+.|||||+.|+.|||||+|. .||.|..+. +.+||||+|+|||||+
T Consensus 162 A~~~~GgWWy~~C~~sNLNG~Y~~~~~~~~~~GI~W~~w~-g~~yslk~~~M~IRp~ 217 (217)
T 2wnp_F 162 AEKFQGAWWYADCHASNLNGLYLMGPHESFANGINWSAAK-GYKYSYKVSEMKVRPA 217 (217)
T ss_dssp HHHTTSCBCCSSSCSEETTSBCCCEECSSSSCBSEETTTT-CTTEECSEEEEEEEEC
T ss_pred cccCCCCCccCCCCCcCCCccccCCCCCCCCCceEECCCC-CCccceeEEEEEeeeC
Confidence 99999999999999999999994 589999874 5579999999999995
No 3
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=100.00 E-value=1.5e-73 Score=582.13 Aligned_cols=191 Identities=35% Similarity=0.738 Sum_probs=176.9
Q ss_pred CCCCCCC-------CCCceEEEECCC-----cccccC----CceEEEEEecCCccccccChHhhccccCCCC----cccc
Q psy14534 230 KLPNDCE-------GHSGLQLISLGR-----SVLCDE----HHWMTIQRRYNGMQEFNLKWTDYAQGFGSPE----SEFW 289 (423)
Q Consensus 230 ~~p~dC~-------~~sGvY~I~p~~-----~v~Cd~----~GWTVIQrR~dGsv~FnR~W~eY~~GFG~~~----gEfW 289 (423)
..|+||. ..||||+|+|.. .||||| +||||||||.||+|+|+|+|++|++|||++. ||||
T Consensus 148 ~~~~dC~~i~~~G~~~SGvY~I~p~~~~~pf~VyCDm~t~GGGWtViQrR~dGsvdF~R~W~eYk~GFG~l~~~~~gEfW 227 (411)
T 3ghg_C 148 ITGKDCQDIANKGAKQSGLYFIKPLKANQQFLVYCEIDGSGNGWTVFQKRLDGSVDFKKNWIQYKEGFGHLSPTGTTEFW 227 (411)
T ss_dssp CCBSSHHHHHHTCCCCCEEEEECCTTCSSCEEEEEEECTTCCEEEEEEEESSCCSCCCCCHHHHHHCEEEECSSSCCCEE
T ss_pred CCCCCHHHHHhcCCCCCceEEEEECCCCCeEEEEeeeecCCCceEEEEeccCCcccccCCHHHHhcccCCcCcCCCCceE
Confidence 4688997 579999999864 389998 5899999999999999999999999999984 9999
Q ss_pred ccchhhhhhhccC--cceEEEEEEecCCCeeEEEeeEEEEeccCCcccccccccc-CCCCCcc--------------CcC
Q psy14534 290 IGNDALHRLTSQD--NMSLRIEFVDIYGKAWYAEYDTFSVASESEGYRLNLSGYH-GNASDAM--------------TYQ 352 (423)
Q Consensus 290 LGLe~ih~LT~~~--~~~L~I~l~d~~g~~~~a~Y~~F~Vg~e~~~Y~L~lg~ys-G~agDsl--------------~~h 352 (423)
||||+||+||+++ +|+|||+|+||+|+.+||+|+.|.|++|+++|+|++|+|+ |+||||| ++|
T Consensus 228 LGle~IH~LT~~~~~~~eLrIeLeD~~G~~~yA~Y~~F~Vg~E~~~Y~L~~~~y~~G~AGDsl~g~~~g~~~~~~~l~~h 307 (411)
T 3ghg_C 228 LGNEKIHLISTQSAIPYALRVELEDWNGRTSTADYAMFKVGPEADKYRLTYAYFAGGDAGDAFDGFDFGDDPSDKFFTSH 307 (411)
T ss_dssp CCHHHHHHHHTSSSCCEEEEEEEECTTSCCCEEEEEEEEECCGGGTSCEECSEEEECTTCCGGGCCCCSSCTTHHHHSCC
T ss_pred eccHHHhHhhccCCCceEEEEEEEECCCCEEEEEEeeeecCCCCCCceEEECcccCCCcccccccccccccccccccccc
Confidence 9999999999985 4999999999999999999999999999999999999996 9999997 689
Q ss_pred CCCCCCcccCCCCCCCCCCCCccCCcccccCCCcCCCCCCCC---------------CCceeccCCCCceeeeceEEEEe
Q psy14534 353 NNMKFSTIDRDNDLSNTHCASNYEGGWWFSHCLHANLNGKFN---------------LGLTWFHSEKNEWMAVARSHMKI 417 (423)
Q Consensus 353 ng~~FST~DrDnD~~~~nCA~~~~GGWWy~~C~~sNLNG~Y~---------------~Gi~W~~~~~~~~~slk~~~M~I 417 (423)
+|++|||+|+|||.+..|||..+.|||||+.|+.|||||+|. .||.|++|. +.|||||+|+|||
T Consensus 308 ~g~~FST~DrDND~~~~nCA~~~~GGWWy~~C~~sNLNG~Y~~g~~~~~~~~~~~~~~GI~W~~w~-g~~YSLK~t~MkI 386 (411)
T 3ghg_C 308 NGMQFSTWDNDNDKFEGNCAEQDGSGWWMNKCHAGHLNGVYYQGGTYSKASTPNGYDNGIIWATWK-TRWYSMKKTTMKI 386 (411)
T ss_dssp TTCCCEETTBCCSSSSSCHHHHHTSEECCSSBCSEESSCBCCSSSBCCTTTSTTSSCCBSEETTTS-CTTBCCSEEEEEE
T ss_pred CCCeecCCCCCCCCCCCCCCCCCCCCcccCCCCCcCCCccccCCCCcccccccccccceeeecccC-CCccceEEEEEEe
Confidence 999999999999998889999999999999999999999984 389999874 5689999999999
Q ss_pred eecC
Q psy14534 418 RRRQ 421 (423)
Q Consensus 418 Rp~~ 421 (423)
||..
T Consensus 387 RP~~ 390 (411)
T 3ghg_C 387 IPFN 390 (411)
T ss_dssp EEGG
T ss_pred eecC
Confidence 9963
No 4
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=100.00 E-value=1.7e-72 Score=582.59 Aligned_cols=190 Identities=36% Similarity=0.727 Sum_probs=177.3
Q ss_pred CCCCCC-------CCCceEEEECCC-----cccccC----CceEEEEEecCCccccccChHhhccccCCC----------
Q psy14534 231 LPNDCE-------GHSGLQLISLGR-----SVLCDE----HHWMTIQRRYNGMQEFNLKWTDYAQGFGSP---------- 284 (423)
Q Consensus 231 ~p~dC~-------~~sGvY~I~p~~-----~v~Cd~----~GWTVIQrR~dGsv~FnR~W~eY~~GFG~~---------- 284 (423)
.|+||. ..||||+|.|.. .||||| +||||||||.||+|+|+|+|++|++|||++
T Consensus 212 ~~~dC~di~~~g~~~SGvY~I~p~~~~~pf~VyCDm~t~ggGWtViQrR~dGsv~F~R~W~~Yk~GFG~~~~~~~~~~c~ 291 (464)
T 1m1j_B 212 SGRECEDIYRKGGETSEMYIIQPDPFTTPYRVYCDMETDNGGWTLIQNRQDGSVNFGRAWDEYKRGFGNIAKSGGKKYCD 291 (464)
T ss_dssp CBSSHHHHHHTTCCSCEEEEECSSTTSCCEEEEEECSGGGSCEEEEEEESSCCSCCCCCHHHHHHCEECCEECSSSSSCC
T ss_pred CCCCHHHHHhcCCCCCeeEEEEeCCCCccEEEEeecccCCCCeEEEEEeeccccccccCHHHHHHHhCCccccccccccC
Confidence 467887 479999999853 389998 589999999999999999999999999999
Q ss_pred -CccccccchhhhhhhccCcceEEEEEEecCCCeeEEEeeEEEEeccCCccccccccccCCCCCcc--------------
Q psy14534 285 -ESEFWIGNDALHRLTSQDNMSLRIEFVDIYGKAWYAEYDTFSVASESEGYRLNLSGYHGNASDAM-------------- 349 (423)
Q Consensus 285 -~gEfWLGLe~ih~LT~~~~~~L~I~l~d~~g~~~~a~Y~~F~Vg~e~~~Y~L~lg~ysG~agDsl-------------- 349 (423)
.||||||||+||+||++++|+|+|+|+||+|+..||.|+.|.|++|.++|+|+||+|+|+|||+|
T Consensus 292 ~~gEfWLGle~ih~LT~~~~~eL~I~Led~~g~~~yA~Y~~F~V~~E~~~Y~L~lg~ysG~AGDsl~~g~~~~~~~~~~~ 371 (464)
T 1m1j_B 292 TPGEYWLGNDKISQLTKIGPTKVLIEMEDWNGDKVSALYGGFTIHNEGNKYQLSVSNYKGNAGNALMEGASQLYGENRTM 371 (464)
T ss_dssp EECSEECCHHHHHHHHTTSCEEEEEEEECSSSCEEEEEEEEEEECCGGGTTCEEEEEEEESSCCHHHHCCTTSCTHHHHT
T ss_pred cceeeEecccceeeccCCCCEEEEEEEEecCCcEEEEeeccEEECCcccceeeecCccccCchhhhhhcccccccccccc
Confidence 79999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CcCCCCCCCcccCCCCCC-----CCCCCCccCCcccccCCCcCCCCCCCC---------------CCceeccCCCCceee
Q psy14534 350 TYQNNMKFSTIDRDNDLS-----NTHCASNYEGGWWFSHCLHANLNGKFN---------------LGLTWFHSEKNEWMA 409 (423)
Q Consensus 350 ~~hng~~FST~DrDnD~~-----~~nCA~~~~GGWWy~~C~~sNLNG~Y~---------------~Gi~W~~~~~~~~~s 409 (423)
++|+||+|||+|+|||.+ ..|||..+.|||||+.|+.+||||+|. .||.|..| ++.|||
T Consensus 372 ~~hng~~FST~DrDND~~~~~d~~~nCA~~~~GGWWy~~C~~sNLNG~Y~~~~~~~~~~~~~~~~~GI~W~~w-~g~~yS 450 (464)
T 1m1j_B 372 TIHNGMYFSTYDRDNDGWLTTDPRKQCSKEDGGGWWYNRCHAANPNGRYYWGGTYSWDMAKHGTDDGIVWMNW-KGSWYS 450 (464)
T ss_dssp TCCTTCCCBBTTBCCSSCCCSCTTCCHHHHTTSCBCCSSBCSEETTSBCCTTSBCCGGGSTTSSCCBSEEHHH-HCSSBC
T ss_pred ccccccccccccccCccccccCcccccccccCCCEeCCCCCCCCCCccccCCCCccccccccCCCCCeEeCCC-CCcccc
Confidence 899999999999999975 379999999999999999999999984 38999987 456899
Q ss_pred eceEEEEeeecC
Q psy14534 410 VARSHMKIRRRQ 421 (423)
Q Consensus 410 lk~~~M~IRp~~ 421 (423)
||+|+|||||+.
T Consensus 451 lK~~~MkIRP~~ 462 (464)
T 1m1j_B 451 MKKMSMKIKPYF 462 (464)
T ss_dssp CSEEEEEEEECC
T ss_pred eeeEEEEeeeCC
Confidence 999999999974
No 5
>1lwu_B Fibrinogen beta chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_B*
Probab=100.00 E-value=5.5e-73 Score=565.34 Aligned_cols=190 Identities=36% Similarity=0.748 Sum_probs=176.7
Q ss_pred CCCCCC-------CCCceEEEECCC-----cccccC----CceEEEEEecCCccccccChHhhccccCCC----------
Q psy14534 231 LPNDCE-------GHSGLQLISLGR-----SVLCDE----HHWMTIQRRYNGMQEFNLKWTDYAQGFGSP---------- 284 (423)
Q Consensus 231 ~p~dC~-------~~sGvY~I~p~~-----~v~Cd~----~GWTVIQrR~dGsv~FnR~W~eY~~GFG~~---------- 284 (423)
.|+||. ..||||+|.|.. .||||| +||||||||.||+|+|+|+|++|++|||++
T Consensus 72 ~~~dC~~i~~~g~~~sGvY~I~p~~~~~p~~V~Cdm~~~gggWtviqrR~dGsv~F~R~W~~Yk~GFG~~~~~~~~~~c~ 151 (323)
T 1lwu_B 72 SGMHCEDIYRNGGRTSEAYYIQPDLFSEPYKVFCDMESHGGGWTVVQNRVDGSSNFARDWNTYKAEFGNIAFGNGKSICN 151 (323)
T ss_dssp CBSSHHHHHHTTCCSCEEEEECSCTTSCCEEEEEECSGGGSCEEEEEEESSSCSCCCCCHHHHHHEEECSEECCSSSCCC
T ss_pred CCCCHHHHHhcCCCCCccEEEEeCCCCCcEEEEEecccCCCCeEEEEEeeccccccccCHHHHhhhhcCcccccccccCC
Confidence 467786 479999999964 389998 589999999999999999999999999999
Q ss_pred -CccccccchhhhhhhccCcceEEEEEEecCCCeeEEEeeEEEEeccCCccccccccccCCCCCcc--------------
Q psy14534 285 -ESEFWIGNDALHRLTSQDNMSLRIEFVDIYGKAWYAEYDTFSVASESEGYRLNLSGYHGNASDAM-------------- 349 (423)
Q Consensus 285 -~gEfWLGLe~ih~LT~~~~~~L~I~l~d~~g~~~~a~Y~~F~Vg~e~~~Y~L~lg~ysG~agDsl-------------- 349 (423)
.||||||||+||+||++++|+|+|+|+||+|+..||.|+.|.|++|.++|+|+||+|+|+|||+|
T Consensus 152 ~~gEfWLGle~ih~LT~~~~~eL~i~L~d~~g~~~~A~Y~~F~V~~e~~~Y~L~~g~ysG~agdsl~~g~~~~~~~~~~~ 231 (323)
T 1lwu_B 152 IPGEYWLGTKTVHQLTKQHTQQVLFDMSDWEGSSVYAQYASFRPENEAQGYRLWVEDYSGNAGNALLEGATQLMGDNRTM 231 (323)
T ss_dssp EECCEEECHHHHHHHHHHSCEEEEEEEECTTSCEEEEEEEEECBCCGGGTTCBCCBCCCSSSCCHHHHCCTTSCTHHHHT
T ss_pred CcccEEeeccceeeecCCCCEEEEEEEEecCCCEEEEEeceeeEcCcCCCeEEecCcccCCchhhhhhcccccccccccc
Confidence 79999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CcCCCCCCCcccCCCCCC-----CCCCCCccCCcccccCCCcCCCCCCCC---------------CCceeccCCCCceee
Q psy14534 350 TYQNNMKFSTIDRDNDLS-----NTHCASNYEGGWWFSHCLHANLNGKFN---------------LGLTWFHSEKNEWMA 409 (423)
Q Consensus 350 ~~hng~~FST~DrDnD~~-----~~nCA~~~~GGWWy~~C~~sNLNG~Y~---------------~Gi~W~~~~~~~~~s 409 (423)
++|+|++|||+|+|||.. ..|||..+.|||||+.|+.+||||+|. .||.|..| ++.|||
T Consensus 232 ~~h~g~~FST~DrDnD~~~~~~~~~nCA~~~~ggWWy~~C~~sNLNG~Y~~~~~~~~~~~~~~~~~GI~W~~w-~g~~ys 310 (323)
T 1lwu_B 232 TIHNGMQFSTFDRDNDNWNPGDPTKHCSREDAGGWWYNRCHAANPNGRYYWGGIYTKEQADYGTDDGVVWMNW-KGSWYS 310 (323)
T ss_dssp TCCTTCCCBBTTBCCSSSCTTCTTCCTTTTTTSCBCCSSSCSEETTSCCCTTSBCCTTTSTTSSCCSSEEHHH-HCTTBC
T ss_pred ccccccccccccccCccccccCccccccccCCCCEeCCCCCCCCCCccccCCCCccccccccCCCCceEeCcC-CCcccc
Confidence 899999999999999975 479999999999999999999999984 48999987 456899
Q ss_pred eceEEEEeeecC
Q psy14534 410 VARSHMKIRRRQ 421 (423)
Q Consensus 410 lk~~~M~IRp~~ 421 (423)
||+|+|||||+.
T Consensus 311 lk~~~M~IRp~~ 322 (323)
T 1lwu_B 311 MRQMAMKLRPKW 322 (323)
T ss_dssp CSEEEEEEECC-
T ss_pred eeeEEEEEeeCC
Confidence 999999999973
No 6
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=100.00 E-value=1.5e-72 Score=561.47 Aligned_cols=191 Identities=37% Similarity=0.710 Sum_probs=180.1
Q ss_pred CCCCCCC-------CCCceEEEECCC-----cccccC---CceEEEEEecCCccccccChHhhccccCCC----Cccccc
Q psy14534 230 KLPNDCE-------GHSGLQLISLGR-----SVLCDE---HHWMTIQRRYNGMQEFNLKWTDYAQGFGSP----ESEFWI 290 (423)
Q Consensus 230 ~~p~dC~-------~~sGvY~I~p~~-----~v~Cd~---~GWTVIQrR~dGsv~FnR~W~eY~~GFG~~----~gEfWL 290 (423)
..|+||. ..||||+|.|++ .||||| +||||||||.||+|+|+|+|.+|++|||++ .|||||
T Consensus 71 ~~~~dC~~i~~~g~~~SGvY~I~p~~~~~pf~V~CDm~tggGWtviQrR~dGsv~F~R~W~~Yk~GFG~~~~~~~gEfWL 150 (323)
T 1lwu_C 71 ITGKDCQQVVDNGGKDSGLYYIKPLKAKQPFLVFCEIENGNGWTVIQHRHDGSVNFTRDWVSYREGFGYLAPTLTTEFWL 150 (323)
T ss_dssp CCCSSHHHHHTTTCCSSEEEEECCTTCSSCEEEEEEECSSCEEEEEEEESSSCSCCCCCHHHHHHCEEEECSSSCSCEEC
T ss_pred CCCcCHHHHHhcCCCCCeEEEEecCCCCCcEEEEEecccCCceEEEEEccCCCCcccCCHHHHhhhhCCcccCCCccEEe
Confidence 5789997 479999999964 389998 689999999999999999999999999999 999999
Q ss_pred cchhhhhhhccCcceEEEEEEecCCCeeEEEeeEEEEeccCCcccccccccc-CCCCCcc--------------CcCCCC
Q psy14534 291 GNDALHRLTSQDNMSLRIEFVDIYGKAWYAEYDTFSVASESEGYRLNLSGYH-GNASDAM--------------TYQNNM 355 (423)
Q Consensus 291 GLe~ih~LT~~~~~~L~I~l~d~~g~~~~a~Y~~F~Vg~e~~~Y~L~lg~ys-G~agDsl--------------~~hng~ 355 (423)
|||+||+||++++|+|||+|+||+|+.+||.|+.|.|++|+++|+|++|+|+ |+|||+| ++|+|+
T Consensus 151 Gle~ih~LT~~~~~eLrI~L~d~~g~~~yA~Y~~F~V~~E~~~Y~L~~g~ys~G~AGDsl~g~~~~~~~~~~~~~~h~g~ 230 (323)
T 1lwu_C 151 GNEKIHLLTGQQAYRLRIDLTDWENTHRYADYGHFKLTPESDEYRLFYSMYLDGDAGNAFDGFDFGDDPQDKFYTTHLGM 230 (323)
T ss_dssp CHHHHHHHHTTSCEEEEEEEECTTCCEEEEEEEEEEECCGGGTTCEECSCEEECTTCCCSSCCCCSSSTTHHHHTCCTTC
T ss_pred cccceeccccCCCeEEEEEEEcCCCCEEEEEecccccCCccCCeEEEEeeccCCChhhhhcccccccccccccccccCCC
Confidence 9999999999999999999999999999999999999999999999999999 9999999 789999
Q ss_pred CCCcccCCCCCCCCCCCCccCCcccccCCCcCCCCCCCC---------------CCceeccCCCCceeeeceEEEEeeec
Q psy14534 356 KFSTIDRDNDLSNTHCASNYEGGWWFSHCLHANLNGKFN---------------LGLTWFHSEKNEWMAVARSHMKIRRR 420 (423)
Q Consensus 356 ~FST~DrDnD~~~~nCA~~~~GGWWy~~C~~sNLNG~Y~---------------~Gi~W~~~~~~~~~slk~~~M~IRp~ 420 (423)
+|||+|+|||.+..|||..+.|||||+.|+.|||||+|. .||.|..|. +.+||||+|+|||||+
T Consensus 231 ~FST~DrDnD~~~~nCA~~~~GGWWy~~C~~sNLNG~Y~~~~~~~~~~~~~~~~~GI~W~~w~-g~~yslk~~~M~IRp~ 309 (323)
T 1lwu_C 231 LFSTPERDNDKYEGSCAEQDGSGWWMNRCHAGHLNGKYYFGGNYRKTDVEFPYDDGIIWATWH-DRWYSLKMTTMKLLPM 309 (323)
T ss_dssp CCBBTTBCCSSSSSCHHHHHTSCBCCSSSCSEESSSCCCCSSCCCCCSCSCCCCCSSEEGGGS-CTTCCCSEEEEEEEES
T ss_pred eeeccCcCCCCCCcCccccCCCCCccCCCCCCCCCccccCCCCCccccccccCCCceEEccCC-CcccceeeEEEEEeeC
Confidence 999999999998889999999999999999999999993 379999874 5689999999999997
Q ss_pred C
Q psy14534 421 Q 421 (423)
Q Consensus 421 ~ 421 (423)
.
T Consensus 310 ~ 310 (323)
T 1lwu_C 310 G 310 (323)
T ss_dssp S
T ss_pred C
Confidence 4
No 7
>2d39_A Ficolin-1; innate immunity system, lectin pathway, immune system; 1.90A {Homo sapiens}
Probab=100.00 E-value=4.3e-73 Score=543.43 Aligned_cols=190 Identities=41% Similarity=0.794 Sum_probs=179.3
Q ss_pred CCCCCC-------CCCceEEEECCC----cccccC----CceEEEEEecCCccccccChHhhccccCCCCccccccchhh
Q psy14534 231 LPNDCE-------GHSGLQLISLGR----SVLCDE----HHWMTIQRRYNGMQEFNLKWTDYAQGFGSPESEFWIGNDAL 295 (423)
Q Consensus 231 ~p~dC~-------~~sGvY~I~p~~----~v~Cd~----~GWTVIQrR~dGsv~FnR~W~eY~~GFG~~~gEfWLGLe~i 295 (423)
+|+||. ..||||+|.|++ .||||| +||||||||.||+|+|+|+|++|++|||++.||||||||+|
T Consensus 2 ~p~~C~~~~~~g~~~sGvy~I~p~~~~p~~V~CDm~t~GGGWtViQrR~dGsv~F~R~W~~Yk~GFG~~~gEfWLGle~i 81 (237)
T 2d39_A 2 FPRNCKDLLDRGYFLSGWHTIYLPDCRPLTVLCDMDTDGGGWTVFQRRMDGSVDFYRDWAAYKQGFGSQLGEFWLGNDNI 81 (237)
T ss_dssp CCSSHHHHHHTTCCSBEEEEEECTTCCEEEEEEECSGGGSCEEEEEEESSSCSCCCCCHHHHHHCEEBTTSCEECCHHHH
T ss_pred CCcCHHHHHhcCCCCCeeEEEecCCCCcEEEEeeeccCCCCeEEEEEeccCCcccccCHHHhhhhcCCcccceEecccce
Confidence 578887 469999999965 389999 68999999999999999999999999999999999999999
Q ss_pred hhhhccCcceEEEEEEecCCCeeEEEeeEEEEeccCCcccccccccc-CCCCCccCcCCCCCCCcccCCCCCCCCCCCCc
Q psy14534 296 HRLTSQDNMSLRIEFVDIYGKAWYAEYDTFSVASESEGYRLNLSGYH-GNASDAMTYQNNMKFSTIDRDNDLSNTHCASN 374 (423)
Q Consensus 296 h~LT~~~~~~L~I~l~d~~g~~~~a~Y~~F~Vg~e~~~Y~L~lg~ys-G~agDsl~~hng~~FST~DrDnD~~~~nCA~~ 374 (423)
|+||++++|+|+|+|+||+|+..||.|+.|.|++|+++|+|+||+|+ |+|||+|++|+|++|||+|+|||.+..|||..
T Consensus 82 h~LT~~~~~eL~I~L~d~~g~~~~A~Y~~F~V~~E~~~Y~L~lg~ys~G~AGDsl~~h~g~~FST~DrDnD~~~~nCA~~ 161 (237)
T 2d39_A 82 HALTAQGSSELRVDLVDFEGNHQFAKYKSFKVADEAEKYKLVLGAFVGGSAGNSLTGHNNNFFSTKDQDNDVSSSNCAEK 161 (237)
T ss_dssp HHHHHSSCEEEEEEEECTTSCEEEEEESCEEECCGGGTTCEEECCEEECTTCCTTTTCTTCCCBBTTBCCSSSSSCHHHH
T ss_pred eecccccceEEEEEEEcCCCCEEEEEECceeecCcccCeEeeecccccccCccccccccCCeeeecCcCCCCCCCCcccc
Confidence 99999999999999999999999999999999999999999999999 99999999999999999999999988999999
Q ss_pred cCCcccccCCCcCCCCCCCC--------CCceeccCCCCceeeeceEEEEeeecC
Q psy14534 375 YEGGWWFSHCLHANLNGKFN--------LGLTWFHSEKNEWMAVARSHMKIRRRQ 421 (423)
Q Consensus 375 ~~GGWWy~~C~~sNLNG~Y~--------~Gi~W~~~~~~~~~slk~~~M~IRp~~ 421 (423)
+.|||||+.|+.|||||+|. .||.|..|. +.+||||+|+|||||+.
T Consensus 162 ~~GgWWy~~C~~sNLNG~Y~~~~~~~~~~GI~W~~w~-g~~yslk~~~M~IRp~~ 215 (237)
T 2d39_A 162 FQGAWWYADCHASNLNGLYLMGPHESYANGINWSAAK-GYKYSYKVSEMKVRPAF 215 (237)
T ss_dssp TTSCBCCSSCCSCCTTSCCBCC-----CCBEECCSST-TCCCEESEEEEEEEEC-
T ss_pred CCCCccCCCCCCCCCCccccCCCCCCCCCceEeCCCC-CceeeeceEEEEEecCC
Confidence 99999999999999999994 589999874 55799999999999974
No 8
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=100.00 E-value=4.3e-72 Score=573.46 Aligned_cols=191 Identities=37% Similarity=0.768 Sum_probs=179.1
Q ss_pred CCCCCCC-------CCCceEEEECCC-----cccccC----CceEEEEEecCCccccccChHhhccccCCC----Ccccc
Q psy14534 230 KLPNDCE-------GHSGLQLISLGR-----SVLCDE----HHWMTIQRRYNGMQEFNLKWTDYAQGFGSP----ESEFW 289 (423)
Q Consensus 230 ~~p~dC~-------~~sGvY~I~p~~-----~v~Cd~----~GWTVIQrR~dGsv~FnR~W~eY~~GFG~~----~gEfW 289 (423)
..|+||. ..||||+|.|++ .||||| +||||||||.||+|+|+|+|.+|++|||++ .||||
T Consensus 148 ~~~~sC~~i~~~g~~~SGvY~I~p~~~~~pf~V~CDm~t~GGGWtviqrR~dGsv~F~R~W~~Yk~GFG~~~~~~~gEfW 227 (409)
T 1m1j_C 148 TTGRDCQDIANKGARKSGLYFIKPQKAKQSFLVYCEIDTYGNGWTVLQRRLDGSEDFRRNWVQYKEGFGHLSPDDTTEFW 227 (409)
T ss_dssp EEESSHHHHHTTTCCSCEEEEECCTTCSSCEEEEEEECTTSCEEEEEEEESSSCSCCCCCHHHHHHCEEEECTTSCCCEE
T ss_pred CCCcCHHHHHhcCCCCCeeEEEecCCCCCcEEEEEeeccCCCceEEEEEccCCCCcccCCHHHHHhhhCCcccCCCccEE
Confidence 3578886 479999999964 389998 589999999999999999999999999999 99999
Q ss_pred ccchhhhhhhc--cCcceEEEEEEecCCCeeEEEeeEEEEeccCCcccccccccc-CCCCCcc--------------CcC
Q psy14534 290 IGNDALHRLTS--QDNMSLRIEFVDIYGKAWYAEYDTFSVASESEGYRLNLSGYH-GNASDAM--------------TYQ 352 (423)
Q Consensus 290 LGLe~ih~LT~--~~~~~L~I~l~d~~g~~~~a~Y~~F~Vg~e~~~Y~L~lg~ys-G~agDsl--------------~~h 352 (423)
||||+||+||+ +++|+|+|+|+||+|+.+||.|+.|.|++|+++|+|++|+|+ |+|||+| ++|
T Consensus 228 LGle~ih~LT~~~~~~~eL~I~L~d~~g~~~~A~Y~~F~V~~E~~~Y~L~~g~ys~G~AGDsl~~~~~~~~~~~~~~~~h 307 (409)
T 1m1j_C 228 LGNEKIHLITTQSTLPYALRIELEDWSGKKGTADYAVFKVGTEEDKYRLTYAYFIGGEAGDAFDGFNFGDDPSDKSYTYH 307 (409)
T ss_dssp CCHHHHHHHHTSSSCCEEEEEEEECTTSCEEEEEEESCEECCTTTTTCEECSEEEECTTCCGGGCCCCSSCTTGGGGSCC
T ss_pred eeccceeeccccCCCCEEEEEEEEcCCCCEEEEEeeeEEecCccCCeEEEEeeecCCCcccccccccccccccccccccc
Confidence 99999999999 899999999999999999999999999999999999999999 9999999 789
Q ss_pred CCCCCCcccCCCCCCCCCCCCccCCcccccCCCcCCCCCCCC---------------CCceeccCCCCceeeeceEEEEe
Q psy14534 353 NNMKFSTIDRDNDLSNTHCASNYEGGWWFSHCLHANLNGKFN---------------LGLTWFHSEKNEWMAVARSHMKI 417 (423)
Q Consensus 353 ng~~FST~DrDnD~~~~nCA~~~~GGWWy~~C~~sNLNG~Y~---------------~Gi~W~~~~~~~~~slk~~~M~I 417 (423)
+|++|||+|+|||.+..|||..+.|||||+.|+.|||||+|. .||.|..|. +.|||||+|+|||
T Consensus 308 ~g~~FST~DrDnD~~~~nCA~~~~GGWWy~~C~~sNLNG~Y~~~~~~~~~~~~~~~~~GI~W~~w~-g~~yslk~~~M~I 386 (409)
T 1m1j_C 308 NGMRFSTFDNDNDNFEGNCAEQDGSGWWMNRCHAGHLNGPYYIGGVYSRDTGTNSYDNGIIWATWR-DRWYSMKKTTMKI 386 (409)
T ss_dssp TTCCCBBTTBCCSSSSSCHHHHHTSCBCCSSSCSEETTSCCCTTSBCCCCSSTTCCCCSSEETTTS-CTTBCCSEEEEEE
T ss_pred cCceeeccCcCCCCCCCCccccCCCCCcCCCCCCCCCCccccCCCCCcccccccCCCCceEEccCC-CcccceeEEEEEE
Confidence 999999999999998889999999999999999999999993 379999874 5689999999999
Q ss_pred eecC
Q psy14534 418 RRRQ 421 (423)
Q Consensus 418 Rp~~ 421 (423)
||+.
T Consensus 387 Rp~~ 390 (409)
T 1m1j_C 387 IPFN 390 (409)
T ss_dssp EEGG
T ss_pred eeCC
Confidence 9963
No 9
>2j5z_A Ficolin-3; hydroxylation, alternative splicing, lectin, collagen, immunology, glycoprotein; HET: GAL; 1.73A {Homo sapiens} PDB: 2j60_A* 2j64_A
Probab=100.00 E-value=5.6e-73 Score=538.27 Aligned_cols=190 Identities=37% Similarity=0.766 Sum_probs=179.3
Q ss_pred cCCCCCCCC-------CCCceEEEECCC----cccccC----CceEEEEEecCCccccccChHhhccccCCCCccccccc
Q psy14534 228 VGKLPNDCE-------GHSGLQLISLGR----SVLCDE----HHWMTIQRRYNGMQEFNLKWTDYAQGFGSPESEFWIGN 292 (423)
Q Consensus 228 ~~~~p~dC~-------~~sGvY~I~p~~----~v~Cd~----~GWTVIQrR~dGsv~FnR~W~eY~~GFG~~~gEfWLGL 292 (423)
+...|+||. ..||||+|.|++ .||||| +||||||||.||+|+|+|+|++|++|||++.|||||||
T Consensus 8 ~~~~~~sC~~~~~~g~~~sGvy~I~p~~~~p~~V~Cdm~t~ggGWtviqrR~dGsv~F~R~W~~Yk~GFG~~~gEfWLGl 87 (221)
T 2j5z_A 8 CQEGPRNCRELLSQGATLSGWYHLCLPEGRALPVFCDMDTEGGGWLVFQRRQDGSVDFFRSWSSYRAGFGNQESEFWLGN 87 (221)
T ss_dssp CCSCCSSHHHHHHTTCCEEEEEEEECTTSCEEEEEEECSGGGSCEEEEEEESSSCSCCCCCHHHHHHCEEBTTSCEECCH
T ss_pred CCCCccChHHHHhcCCCCCeEEEEECCCCCcEEEEEeeccCCCCeEEEEEEecCCcccccCHHHhhhhcCCccccEEEec
Confidence 445789997 359999999975 389999 68999999999999999999999999999999999999
Q ss_pred hhhhhhhccCcceEEEEEEecCCCeeEEEeeEEEEeccCCcccccccccc-CCCCCccCcCCCCCCCcccCCCCCCCCCC
Q psy14534 293 DALHRLTSQDNMSLRIEFVDIYGKAWYAEYDTFSVASESEGYRLNLSGYH-GNASDAMTYQNNMKFSTIDRDNDLSNTHC 371 (423)
Q Consensus 293 e~ih~LT~~~~~~L~I~l~d~~g~~~~a~Y~~F~Vg~e~~~Y~L~lg~ys-G~agDsl~~hng~~FST~DrDnD~~~~nC 371 (423)
|+||+||++++|+|+|+|+||+|+..||+|+.|.|++|+++|+|+||+|+ |+|||+|++|+|++|||+|+|||.+..||
T Consensus 88 e~ih~LT~~~~~eL~I~L~d~~g~~~~A~Y~~F~V~~e~~~Y~L~lg~ys~G~agDsl~~h~g~~FST~D~DnD~~~~nC 167 (221)
T 2j5z_A 88 ENLHQLTLQGNWELRVELEDFNGNRTFAHYATFRLLGEVDHYQLALGKFSEGTAGDSLSLHSGRPFTTYDADHDSSNSNC 167 (221)
T ss_dssp HHHHHHHSSSCCCEEEEEECTTCCEEEEEESCEEECCGGGTTCEEECCBCCCTTCCCSGGGTTCCCBBTTBCCSSSSSCH
T ss_pred CCeeeccccccEEEEEEEEcCCCCEEEEEEcceecCCcCCceEeeecccccCCCcccccccccceeccccccCCCCccCc
Confidence 99999999999999999999999999999999999999999999999999 99999999999999999999999988999
Q ss_pred CCccCCcccccCCCcCCCCCCCC--------CCceeccCCCCceeeeceEEEEee
Q psy14534 372 ASNYEGGWWFSHCLHANLNGKFN--------LGLTWFHSEKNEWMAVARSHMKIR 418 (423)
Q Consensus 372 A~~~~GGWWy~~C~~sNLNG~Y~--------~Gi~W~~~~~~~~~slk~~~M~IR 418 (423)
|..+.|||||+.|+.|||||+|. .||.|..|. +.+||||+|+||||
T Consensus 168 A~~~~GgWWy~~C~~sNLNG~Y~~~~~~~~~~GI~W~~w~-g~~yslk~~~M~IR 221 (221)
T 2j5z_A 168 AVIVHGAWWYASCYRSNLNGRYAVSEAAAHKYGIDWASGR-GVGHPYRRVRMMLR 221 (221)
T ss_dssp HHHHTSCBSCSSSCSBCTTSCCCSSSTTCCSSCSCBTTTT-CTTCCCSEEEEEEC
T ss_pred cccCCccEeCCCCCCcCCCccCcCCCCCCCCCceEeCCCC-CCceeeeEEEEEeC
Confidence 99999999999999999999994 489999874 55799999999998
No 10
>1z3u_A Angiopoietin-2, ANG-2; TIE2 binding, angiogenesis, extracellular ligand, signaling protein; 2.25A {Homo sapiens} PDB: 1z3s_A 2gy7_A*
Probab=100.00 E-value=6.3e-73 Score=537.04 Aligned_cols=183 Identities=34% Similarity=0.687 Sum_probs=173.1
Q ss_pred CCCceEEEECCC-----cccccC----CceEEEEEecCCccccccChHhhccccCCCCccccccchhhhhhhccCcceEE
Q psy14534 237 GHSGLQLISLGR-----SVLCDE----HHWMTIQRRYNGMQEFNLKWTDYAQGFGSPESEFWIGNDALHRLTSQDNMSLR 307 (423)
Q Consensus 237 ~~sGvY~I~p~~-----~v~Cd~----~GWTVIQrR~dGsv~FnR~W~eY~~GFG~~~gEfWLGLe~ih~LT~~~~~~L~ 307 (423)
..||||+|.|+. .||||| +||||||||.||+|+|+|+|++|++|||++.||||||||+||+||++++|+|+
T Consensus 14 ~~sGvy~I~~~~~~~~~~v~Cdm~t~ggGWtviQrR~dGsv~F~R~W~~Yk~GFG~~~gEfWLGle~ih~LT~~~~~eL~ 93 (217)
T 1z3u_A 14 TTNGIYTLTFPNSTEEIKAYCDMEAGGGGWTIIQRREDGSVDFQRTWKEYKVGFGNPSGEYWLGNEFVSQLTNQQRYVLK 93 (217)
T ss_dssp CSCEEEEEECTTSSCEEEEEEECSSTTSCEEEEEEESSSCCCCCCCHHHHHHCEECTTSSEECCHHHHHHHHHHSCEEEE
T ss_pred CCCeEEEEecCCCCccEEEEEecccCCCCeEEEEEeeccccccccCHHHhhhhcCCcceeEEEccCceEeccCCCceEEE
Confidence 479999999865 389998 58999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCeeEEEeeEEEEeccCCccccccccccCCCCCccC-cCCCCCCCcccCCCCCCCCCCCCccCCcccccCCCc
Q psy14534 308 IEFVDIYGKAWYAEYDTFSVASESEGYRLNLSGYHGNASDAMT-YQNNMKFSTIDRDNDLSNTHCASNYEGGWWFSHCLH 386 (423)
Q Consensus 308 I~l~d~~g~~~~a~Y~~F~Vg~e~~~Y~L~lg~ysG~agDsl~-~hng~~FST~DrDnD~~~~nCA~~~~GGWWy~~C~~ 386 (423)
|+|+||+|+..||+|+.|.|++|+++|+|+||+|+|+|||++. +|+|++|||+|+|||.+..|||..+.|||||+.|+.
T Consensus 94 I~L~d~~g~~~~A~Y~~F~V~~e~~~Y~L~~g~ysG~agd~~~~~h~g~~FST~D~DnD~~~~nCA~~~~GgWWy~~C~~ 173 (217)
T 1z3u_A 94 IHLKDWEGNEAYSLYEHFYLSSEELNYRIHLKGLTGTAGKISSISQPGNDFSTKDGDNDKCICKCSQMLTGGWWFDACGP 173 (217)
T ss_dssp EEEECSSSCEEEEEEEEEEECCGGGTTCEEEEEEEESSCSSCSSCSSCCCCBBTTBCCSSSSSCHHHHHCSCBCCSSSCS
T ss_pred EEEEcCCCCEEEEEEeeeeeCCcCCcEEEEEEEeCCCcccccchhhhccccccccccCCCccccccccccCeEeCCCCCc
Confidence 9999999999999999999999999999999999999999875 799999999999999888899999999999999999
Q ss_pred CCCCCCCC---------CCceeccCCCCceeeeceEEEEeeec
Q psy14534 387 ANLNGKFN---------LGLTWFHSEKNEWMAVARSHMKIRRR 420 (423)
Q Consensus 387 sNLNG~Y~---------~Gi~W~~~~~~~~~slk~~~M~IRp~ 420 (423)
|||||+|. .||.|..|. +.+||||+|+|||||+
T Consensus 174 sNLNG~Y~~~~~~~~~~~Gi~W~~w~-g~~yslk~~~M~IRp~ 215 (217)
T 1z3u_A 174 SNLNGMYYPQRQNTNKANGIKWAAWK-GSGYSLKATTMMIRPA 215 (217)
T ss_dssp EETTSCCCCTTSCSSCTTSCEEHHHH-CTTCCCSEEEEEEEEC
T ss_pred cCCCccccCCCCCCCCCCceEeCcCC-CceeeeEEEEEEEeeC
Confidence 99999995 389998774 4579999999999996
No 11
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=100.00 E-value=1.2e-72 Score=561.26 Aligned_cols=191 Identities=35% Similarity=0.725 Sum_probs=179.3
Q ss_pred CCCCCCC-------CCCceEEEECCC-----cccccC----CceEEEEEecCCccccccChHhhccccCCC----Ccccc
Q psy14534 230 KLPNDCE-------GHSGLQLISLGR-----SVLCDE----HHWMTIQRRYNGMQEFNLKWTDYAQGFGSP----ESEFW 289 (423)
Q Consensus 230 ~~p~dC~-------~~sGvY~I~p~~-----~v~Cd~----~GWTVIQrR~dGsv~FnR~W~eY~~GFG~~----~gEfW 289 (423)
..|+||. ..||||+|.|++ .||||| +||||||||.||+|+|+|+|++|++|||++ .||||
T Consensus 61 ~~~~sC~~i~~~g~~~SGvY~I~p~~~~~pf~VyCDm~t~ggGWtviqrR~dGsv~F~R~W~~Yk~GFG~~~~~~~gEfW 140 (319)
T 1fzc_C 61 ITGKDCQDIANKGAKQSGLYFIKPLKANQQFLVYCEIDGSGNGWTVFQKRLDGSVDFKKNWIQYKEGFGHLSPTGTTEFW 140 (319)
T ss_dssp CCBSSHHHHHTTTCCCCEEEEECCTTCSSCEEEEEEECTTSCEEEEEEEESSSCSCCCCCHHHHHHCEEEECTTSCSCEE
T ss_pred CCCcCHHHHHhcCCCCCeEEEEecCCCCCcEEEEEeeecCCCCEEEEEEecCCCcceecCHHHHhHhhCCcccCCCccEE
Confidence 4678887 479999999964 389998 589999999999999999999999999999 99999
Q ss_pred ccchhhhhhhc--cCcceEEEEEEecCCCeeEEEeeEEEEeccCCcccccccccc-CCCCCcc--------------CcC
Q psy14534 290 IGNDALHRLTS--QDNMSLRIEFVDIYGKAWYAEYDTFSVASESEGYRLNLSGYH-GNASDAM--------------TYQ 352 (423)
Q Consensus 290 LGLe~ih~LT~--~~~~~L~I~l~d~~g~~~~a~Y~~F~Vg~e~~~Y~L~lg~ys-G~agDsl--------------~~h 352 (423)
||||+||+||+ +++|+|+|+|+||+|+..||.|+.|.|++|+++|+|++|+|+ |+|||+| ++|
T Consensus 141 LGle~ih~LT~~~~~~~eL~I~L~d~~g~~~yA~Y~~F~V~~E~~~Y~L~~g~ys~G~AGDsl~~~~~~~~~~~~~~~~h 220 (319)
T 1fzc_C 141 LGNEKIHLISTQSAIPYALRVELEDWNGRTSTADYAMFKVGPEADKYRLTYAYFAGGDAGDAFDGFDFGDDPSDKFFTSH 220 (319)
T ss_dssp CCHHHHHHHHTSTTCCEEEEEEEECTTSCEEEEEEESCEECCGGGTTCEECSEECCCTTCCGGGCCCCSSCTTHHHHSCC
T ss_pred eccccEEEeeccCCCCEEEEEEEECCCCCEEEEEEeccccCCcccCeEEEEeeecCCCcccccccccccccccccccccc
Confidence 99999999999 899999999999999999999999999999999999999999 9999999 899
Q ss_pred CCCCCCcccCCCCCCCCCCCCccCCcccccCCCcCCCCCCCC---------------CCceeccCCCCceeeeceEEEEe
Q psy14534 353 NNMKFSTIDRDNDLSNTHCASNYEGGWWFSHCLHANLNGKFN---------------LGLTWFHSEKNEWMAVARSHMKI 417 (423)
Q Consensus 353 ng~~FST~DrDnD~~~~nCA~~~~GGWWy~~C~~sNLNG~Y~---------------~Gi~W~~~~~~~~~slk~~~M~I 417 (423)
+|++|||+|+|||.+..|||..+.|||||+.|+.|||||+|. .||.|.+|. +.+||||+|+|||
T Consensus 221 ~g~~FST~DrDnD~~~~nCA~~~~GGWWy~~C~~sNLNG~Y~~~~~~~~~~~~~~~~~GI~W~~w~-g~~yslk~~~M~I 299 (319)
T 1fzc_C 221 NGMQFSTWDNDNDKFEGNCAEQDGSGWWMNKCHAGHLNGVYYQGGTYSKASTPNGYDNGIIWATWK-TRWYSMKKTTMKI 299 (319)
T ss_dssp TTCCCBBTTBCCSSSSSCHHHHHTSCBCCSSBCSEETTSBCCTTSBCCGGGSSSSSCCBSEETTTS-CTTBCCSEEEEEE
T ss_pred cCceeeccCcCCCCCCCCcccccCCCCcCCCCCCCCCCccccCCCCCccccccccCCCceEEccCC-CcccceeEEEEEE
Confidence 999999999999998889999999999999999999999994 379999874 5689999999999
Q ss_pred eecC
Q psy14534 418 RRRQ 421 (423)
Q Consensus 418 Rp~~ 421 (423)
||+.
T Consensus 300 Rp~~ 303 (319)
T 1fzc_C 300 IPFN 303 (319)
T ss_dssp EETT
T ss_pred eeCC
Confidence 9973
No 12
>1fzc_B Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_B* 1fza_B* 1fze_B* 1fzf_B* 1fzg_B* 1n86_B* 1n8e_B 2h43_B* 2hlo_B* 2hod_B* 2hpc_B* 2q9i_B* 2xnx_B 2xny_B 3e1i_B* 2z4e_B* 2oyh_B* 1ltj_B* 1rf0_B* 1lt9_B* ...
Probab=100.00 E-value=2.4e-72 Score=561.95 Aligned_cols=190 Identities=37% Similarity=0.733 Sum_probs=177.1
Q ss_pred CCCCCC-------CCCceEEEECCC-----cccccC----CceEEEEEecCCccccccChHhhccccCCC----------
Q psy14534 231 LPNDCE-------GHSGLQLISLGR-----SVLCDE----HHWMTIQRRYNGMQEFNLKWTDYAQGFGSP---------- 284 (423)
Q Consensus 231 ~p~dC~-------~~sGvY~I~p~~-----~v~Cd~----~GWTVIQrR~dGsv~FnR~W~eY~~GFG~~---------- 284 (423)
.|+||. ..||||+|.|.. .||||| +||||||||.||+|+|+|+|++|++|||++
T Consensus 74 ~~~dC~~i~~~g~~~sGvy~I~p~~~~~p~~V~Cd~~~~gggWtviqrR~dgsv~F~r~W~~Yk~GFG~~~~~~~~~~~c 153 (328)
T 1fzc_B 74 SGKECEEIIRKGGETSEMYLIQPDSSVKPYRVYCDMNTENGGWTVIQNRQDGSVDFGRKWDPYKQGFGNVATNTDGKNYC 153 (328)
T ss_dssp CBSSHHHHHHTTCCSCEEEEECSCTTSCCEEEEEECSGGGSCEEEEEEESSSCSCCCCCHHHHHHCEECSEECCTTCSSC
T ss_pred CCCCHHHHHhcCCCCCceEEEEeCCCCCcEEEEEecccCCCCeEEEEEeccccccccccHHHHhhhhccccccccccccc
Confidence 467886 479999999863 389998 589999999999999999999999999999
Q ss_pred --CccccccchhhhhhhccCcceEEEEEEecCCCeeEEEeeEEEEeccCCccccccccccCCCCCcc-------------
Q psy14534 285 --ESEFWIGNDALHRLTSQDNMSLRIEFVDIYGKAWYAEYDTFSVASESEGYRLNLSGYHGNASDAM------------- 349 (423)
Q Consensus 285 --~gEfWLGLe~ih~LT~~~~~~L~I~l~d~~g~~~~a~Y~~F~Vg~e~~~Y~L~lg~ysG~agDsl------------- 349 (423)
.||||||||+||+||++++|+|+|+|+||+|+..||.|+.|.|++|+++|+|+||+|+|+|||+|
T Consensus 154 ~~~gEfWLGle~ih~LT~~~~~eL~i~L~d~~g~~~~A~Y~~F~v~~e~~~Y~L~~g~ysG~agdsl~~g~~~~~~~~~~ 233 (328)
T 1fzc_B 154 GLPGEYWLGNDKISQLTRMGPTELLIEMEDWKGDKVKAHYGGFTVQNEANKYQISVNKYRGTAGNALMDGASQLMGENRT 233 (328)
T ss_dssp CEECSEECCHHHHHHHHHTSCCEEEEEEECTTSCEEEEEEEEEEECCGGGTTCEEEEEEEESSCCHHHHCCTTSCHHHHH
T ss_pred CcccceEecccceEeecCCCCEEEEEEEEecCCcEEEEEeeeEEeccCCCceEEEeCCCccCchhhhhhccccccccccc
Confidence 79999999999999999999999999999999999999999999999999999999999999997
Q ss_pred -CcCCCCCCCcccCCCCCC-----CCCCCCccCCcccccCCCcCCCCCCCC---------------CCceeccCCCCcee
Q psy14534 350 -TYQNNMKFSTIDRDNDLS-----NTHCASNYEGGWWFSHCLHANLNGKFN---------------LGLTWFHSEKNEWM 408 (423)
Q Consensus 350 -~~hng~~FST~DrDnD~~-----~~nCA~~~~GGWWy~~C~~sNLNG~Y~---------------~Gi~W~~~~~~~~~ 408 (423)
++|+||+|||+|+|||.. ..|||..+.|||||+.|+.|||||+|. .||.|..|. +.||
T Consensus 234 ~~~h~g~~FST~DrDnD~~~~~~~~~nCA~~~~ggWWy~~C~~sNLNG~Y~~~~~~~~~~~~~~~~~Gi~W~~w~-g~~y 312 (328)
T 1fzc_B 234 MTIHNGMFFSTYDRDNDGWLTSDPRKQCSKEDGGGWWYNRCHAANPNGRYYWGGQYTWDMAKHGTDDGVVWMNWK-GSWY 312 (328)
T ss_dssp TTCCTTCCCBBTTBCCCSCCCSCTTCCTTTTTCSCBCCSSBCSBCTTSCCCTTSBCCTTTSTTSSCCSSCBHHHH-BTTB
T ss_pred cccccccccccccccCccccccCccccccccCCCCEeCCCCCCCCCCccccCCCCccccccccCCCCCeEEccCC-Ccee
Confidence 899999999999999975 379999999999999999999999994 489999874 5689
Q ss_pred eeceEEEEeeecC
Q psy14534 409 AVARSHMKIRRRQ 421 (423)
Q Consensus 409 slk~~~M~IRp~~ 421 (423)
|||+|+|||||+.
T Consensus 313 slk~~~M~IRp~~ 325 (328)
T 1fzc_B 313 SMRKMSMKIRPFF 325 (328)
T ss_dssp CCSEEEEEEECCC
T ss_pred ceeeEEEEeeeCC
Confidence 9999999999975
No 13
>2fib_A Fibrinogen; fibrinogen, blood coagulation, fibrin polymerization, complex (blood coagulation/peptide); 2.01A {Homo sapiens} SCOP: d.171.1.1 PDB: 1fic_A 1fid_A 1fib_A 3fib_A
Probab=100.00 E-value=9.5e-72 Score=543.28 Aligned_cols=191 Identities=35% Similarity=0.725 Sum_probs=179.0
Q ss_pred CCCCCCC-------CCCceEEEECCC-----cccccC----CceEEEEEecCCccccccChHhhccccCCC----Ccccc
Q psy14534 230 KLPNDCE-------GHSGLQLISLGR-----SVLCDE----HHWMTIQRRYNGMQEFNLKWTDYAQGFGSP----ESEFW 289 (423)
Q Consensus 230 ~~p~dC~-------~~sGvY~I~p~~-----~v~Cd~----~GWTVIQrR~dGsv~FnR~W~eY~~GFG~~----~gEfW 289 (423)
..|+||. ..||||+|.|+. .||||| +||||||||.||+|+|+|+|++|++|||++ .||||
T Consensus 6 ~~~~dC~di~~~g~~~sGvY~I~p~~~~~pf~V~Cdm~t~GgGWtviqrR~dGsv~F~R~W~eYk~GFG~~~~~~~gEfW 85 (269)
T 2fib_A 6 ITGKDCQDIANKGAKQSGLYFIKPLKANQQFLVYCEIDGSGNGWTVFQKRLDGSVDFKKNWIQYKEGFGHLSPTGTTEFW 85 (269)
T ss_dssp EEESSHHHHHHTTCCSCEEEEECCTTCSSCEEEEEEECTTSCEEEEEEEESSSCSCCCCCHHHHHHCEECCCTTSCSCEE
T ss_pred CCccChHHHHhcCCCCCeeEEEEeCCCCCeEEEEEeEecCCCcEEEEEEeccCCcccccchHHhceeecccccCCCccEE
Confidence 4578886 479999999964 389998 589999999999999999999999999999 99999
Q ss_pred ccchhhhhhhc--cCcceEEEEEEecCCCeeEEEeeEEEEeccCCcccccccccc-CCCCCcc--------------CcC
Q psy14534 290 IGNDALHRLTS--QDNMSLRIEFVDIYGKAWYAEYDTFSVASESEGYRLNLSGYH-GNASDAM--------------TYQ 352 (423)
Q Consensus 290 LGLe~ih~LT~--~~~~~L~I~l~d~~g~~~~a~Y~~F~Vg~e~~~Y~L~lg~ys-G~agDsl--------------~~h 352 (423)
||||+||+||+ +++|+|+|+|+||+|+..||+|+.|+|++|+++|+|++|+|+ |+|||+| ++|
T Consensus 86 LGle~ih~LT~~~~~~~eLrI~Led~~g~~~yA~Y~~F~V~~E~~~Y~L~~g~ys~G~AGDsl~~~~~~~~~~~~~~~~h 165 (269)
T 2fib_A 86 LGNEKIHLISTQSAIPYALRVELEDWNGRTSTADYAMFKVGPEADKYRLTYAYFAGGDAGDAFDGFDFGDDPSDKFFTSH 165 (269)
T ss_dssp CCHHHHHHHHTGGGCCEEEEEEEECTTSCEEEEEEESCEECCGGGTSCEECSEEEECTTCCGGGCCCCSSCSSHHHHHCC
T ss_pred eeccceEeeeccCCCCEEEEEEEEcCCCCEEEEEEeccccCCccCCeEEEEecccCCChhhhhccccccccccccccccc
Confidence 99999999999 999999999999999999999999999999999999999999 9999999 789
Q ss_pred CCCCCCcccCCCCCCCCCCCCccCCcccccCCCcCCCCCCCC---------------CCceeccCCCCceeeeceEEEEe
Q psy14534 353 NNMKFSTIDRDNDLSNTHCASNYEGGWWFSHCLHANLNGKFN---------------LGLTWFHSEKNEWMAVARSHMKI 417 (423)
Q Consensus 353 ng~~FST~DrDnD~~~~nCA~~~~GGWWy~~C~~sNLNG~Y~---------------~Gi~W~~~~~~~~~slk~~~M~I 417 (423)
+|++|||+|+|||.+..|||..+.|||||+.|+.|||||+|. .||.|..|. +.+||||+|+|||
T Consensus 166 ~g~~FST~DrDnD~~~~nCA~~~~GGWWy~~C~~sNLNG~Y~~~g~~~~~~~~~~~~~GI~W~~w~-g~~yslk~~~M~I 244 (269)
T 2fib_A 166 NGMQFSTWDNDNDKFEGNCAEQDGSGWWMNKCHAGHLNGVYYQGGTYSKASTPNGYDNGIIWATWK-TRWYSMKKTTMKI 244 (269)
T ss_dssp TTCCCBBTTBCCSSSSSCHHHHHTSCBCCSSSCSEETTSCCCTTSBCCGGGSTTCCCCSSEETTTS-CTTBCCSEEEEEE
T ss_pred ccceeccccccCCCCCCCcccccCCCCcCCCCCCCCCCccccCCCCCCcccccccCCCceEECcCC-CcccceeEEEEEE
Confidence 999999999999998889999999999999999999999994 379999874 5689999999999
Q ss_pred eecC
Q psy14534 418 RRRQ 421 (423)
Q Consensus 418 Rp~~ 421 (423)
||+.
T Consensus 245 Rp~~ 248 (269)
T 2fib_A 245 IPFN 248 (269)
T ss_dssp EEGG
T ss_pred eeCC
Confidence 9963
No 14
>1jc9_A Techylectin-5A; fibrinogen related, sugar binding protein; HET: NAG; 2.01A {Tachypleus tridentatus} SCOP: d.171.1.1
Probab=100.00 E-value=1.1e-70 Score=536.08 Aligned_cols=191 Identities=37% Similarity=0.702 Sum_probs=179.4
Q ss_pred CCCCCCC-------CCCceEEEECC--C-----cccccC----CceEEEEEecC---CccccccChHhhccccCCCCccc
Q psy14534 230 KLPNDCE-------GHSGLQLISLG--R-----SVLCDE----HHWMTIQRRYN---GMQEFNLKWTDYAQGFGSPESEF 288 (423)
Q Consensus 230 ~~p~dC~-------~~sGvY~I~p~--~-----~v~Cd~----~GWTVIQrR~d---Gsv~FnR~W~eY~~GFG~~~gEf 288 (423)
..|+||. ..||||+|.|+ . .||||| +||||||||.| |+|+|+|+|.+|++|||++.|||
T Consensus 44 ~~~~sC~dl~~~g~~~sGvY~I~p~~~~~~~~~~VyCdm~t~GGGWtviqrR~d~~~Gsv~F~R~W~~Yk~GFG~~~gEf 123 (269)
T 1jc9_A 44 PDPTDCADILLNGYRSSGGYRIWPKSWMTVGTLNVYCDMETDGGGWTVIQRRGNYGNPSDYFYKPWKNYKLGFGNIEKDF 123 (269)
T ss_dssp -CCCSHHHHHHTTCCSCEEEEECCTTHHHHCCEEEEEECSGGGSCEEEEEEECCSSCCTTTTCCCHHHHHHCEECTTSSE
T ss_pred CCccChHHHHhcCCCCCeEEEEecCCCCCCCcEEEEEeeccCCCceEEEEEeecCCCCcccccccchhccccCCCccccE
Confidence 4688887 47999999996 1 389998 58999999999 99999999999999999999999
Q ss_pred cccchhhhhhhccCcceEEEEEEecCCCeeEEEeeEEEEeccCCccccccccccCCCCCccCcCCCCCCCcccCCCCCCC
Q psy14534 289 WIGNDALHRLTSQDNMSLRIEFVDIYGKAWYAEYDTFSVASESEGYRLNLSGYHGNASDAMTYQNNMKFSTIDRDNDLSN 368 (423)
Q Consensus 289 WLGLe~ih~LT~~~~~~L~I~l~d~~g~~~~a~Y~~F~Vg~e~~~Y~L~lg~ysG~agDsl~~hng~~FST~DrDnD~~~ 368 (423)
|||||+||+||++++|+|+|+|+||+|+..||.|+.|.|++|+++|+|++|+|+|+|||+|++|+|++|||+|+|||.+.
T Consensus 124 WLGle~ih~LT~~~~~eL~I~L~d~~g~~~~A~Y~~F~V~~e~~~Y~L~~g~ysG~AgDsl~~h~g~~FST~DrDnD~~~ 203 (269)
T 1jc9_A 124 WLGNDRIFALTNQRNYMIRFDLKDKENDTRYAIYQDFWIENEDYLYCLHIGNYSGDAGNSFGRHNGHNFSTIDKDHDTHE 203 (269)
T ss_dssp ECCHHHHHHHHHHSCEEEEEEEECTTSCEEEEEEEEEEECCGGGTTCEECCCEEESSCSCSGGGTTCCCBBTTBCCSSSS
T ss_pred EecccceeecccCCCeEEEEEEecCCCCEEEEEeceEEECCccCCeEeeeeeecCCccccchhhccccccccCccCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred CCCCCccCCcccccCCCcCCCCCCCC--------CCceeccCCCCceeeeceEEEEeeecC
Q psy14534 369 THCASNYEGGWWFSHCLHANLNGKFN--------LGLTWFHSEKNEWMAVARSHMKIRRRQ 421 (423)
Q Consensus 369 ~nCA~~~~GGWWy~~C~~sNLNG~Y~--------~Gi~W~~~~~~~~~slk~~~M~IRp~~ 421 (423)
.|||..+.|||||+.|+.+||||+|. .||.|..|. +.+|+||+|+|||||+.
T Consensus 204 ~nCA~~~~GgWWy~~C~~sNLNG~Y~~~~~~~~~~GI~W~~w~-g~~yslk~~~M~IRp~~ 263 (269)
T 1jc9_A 204 THCAQTYKGGWWYDRCHESNLNGLYLNGEHNSYADGIEWRAWK-GYHYSLPQVEMKIRPVE 263 (269)
T ss_dssp SCHHHHHCSCBCCSSSCSBCTTSBCCCEECSSSSCBSCBHHHH-TTSEECSEEEEEEEETT
T ss_pred ccccccccCCEeCCCCCCCCCCccccCCCCCCCCCceEeCcCC-CceeeeeEEEEEEeeCc
Confidence 89999999999999999999999994 489999774 56899999999999963
No 15
>1fzd_A Fibrinogen-420; blood coagulation, alphaec domain, fibrinoge domain, glycosylated protein; HET: NAG MAN NDG; 2.10A {Homo sapiens} SCOP: d.171.1.1
Probab=100.00 E-value=3.7e-67 Score=492.42 Aligned_cols=166 Identities=47% Similarity=0.852 Sum_probs=157.5
Q ss_pred CCceEEEEEecCCccccccChHhhccccCCC----CccccccchhhhhhhccCcceEEEEEEecCCCeeEEEeeEEEEec
Q psy14534 254 EHHWMTIQRRYNGMQEFNLKWTDYAQGFGSP----ESEFWIGNDALHRLTSQDNMSLRIEFVDIYGKAWYAEYDTFSVAS 329 (423)
Q Consensus 254 ~~GWTVIQrR~dGsv~FnR~W~eY~~GFG~~----~gEfWLGLe~ih~LT~~~~~~L~I~l~d~~g~~~~a~Y~~F~Vg~ 329 (423)
.+||||||||.||+|+|+|+|++|++|||++ .||||||||+||+|| +++|+|+|+|+||+|+..||+| .|.|++
T Consensus 4 GGGWtVIQrR~dGsv~F~R~W~eYk~GFG~~~~~~~gEfWLGle~ih~LT-~~~~eL~I~L~d~~g~~~yA~Y-~F~V~~ 81 (201)
T 1fzd_A 4 LGGWLLIQQRMDGSLNFNRTWQDYKRGFGSLNDEGEGEFWLGNDYLHLLT-QRGSVLRVELEDWAGNEAYAEY-HFRVGS 81 (201)
T ss_dssp -CCCEEEEEESSSCSCCCCCHHHHHHCEECCCTTSCSCEECCHHHHHHHH-TTCCEEEEEEECTTSCEEEEEE-EEEECC
T ss_pred CCceEEEEEccCCCccccCCHHHHhhhcCCcCcCCCCCEEEeccceeccc-cCCEEEEEEEEeCCCCEEEEEE-EEEEee
Confidence 4799999999999999999999999999999 999999999999999 9999999999999999999999 999999
Q ss_pred cCCccccccccccCCCCCccC-----------cCCCCCCCcccCCCCCCCCCCCCccCCcccccCCCcCCCCCCCC----
Q psy14534 330 ESEGYRLNLSGYHGNASDAMT-----------YQNNMKFSTIDRDNDLSNTHCASNYEGGWWFSHCLHANLNGKFN---- 394 (423)
Q Consensus 330 e~~~Y~L~lg~ysG~agDsl~-----------~hng~~FST~DrDnD~~~~nCA~~~~GGWWy~~C~~sNLNG~Y~---- 394 (423)
|+++|+|+||+|+|+|||+|. +|+|++|||+|+|||.+..|||..+.|||||+.|+.|||||+|.
T Consensus 82 e~~~Y~L~~g~ysG~aGDsl~~g~~~~g~~~~~h~g~~FST~DrDnD~~~~nCA~~~~GGWWy~~C~~sNLNG~Y~~~~~ 161 (201)
T 1fzd_A 82 EAEGYALQVSSYEGTAGDALIEGSVEEGAEYTSHNNMQFSTFDRDADQWEENCAEVYGGGWWYNNCQAANLNGIYYPGGS 161 (201)
T ss_dssp TTTTTCEEEEEEEESSCCTTTTCCTTTCHHHHCCTTCCCBBTTBCCSSSSSCHHHHHCSCBCCSSSCSEETTSBCCSSSB
T ss_pred ccCCcEEEEeeecCCccccccccccccccccccccCcEEeccCcCCCCCCCCcccccCCCCcCCCCCCCCCCccccCCCc
Confidence 999999999999999999994 99999999999999998889999999999999999999999994
Q ss_pred ------------CCceeccCCCCceeeeceEEEEeeecCC
Q psy14534 395 ------------LGLTWFHSEKNEWMAVARSHMKIRRRQS 422 (423)
Q Consensus 395 ------------~Gi~W~~~~~~~~~slk~~~M~IRp~~~ 422 (423)
.||.|.++. +.+||||+|+|||||+.+
T Consensus 162 ~~~~~~~~~~~~~GI~W~~w~-g~~yslk~~~M~IRp~~~ 200 (201)
T 1fzd_A 162 YDPRNNSPYEIENGVVWVSFR-GADYSLRAVRMKIRPLVT 200 (201)
T ss_dssp CCGGGCSSCCSCCBSEEHHHH-BTTBCCSEEEEEEECTTC
T ss_pred ccccccccccCCCceEeCcCC-CcccceeEEEEEEEeCCC
Confidence 379998774 457999999999999864
No 16
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=96.58 E-value=0.39 Score=43.21 Aligned_cols=8 Identities=38% Similarity=0.530 Sum_probs=2.9
Q ss_pred hhhhhhhh
Q psy14534 49 RISHLETS 56 (423)
Q Consensus 49 r~~~~e~~ 56 (423)
|+..++.+
T Consensus 91 ~~~~~~~~ 98 (284)
T 1c1g_A 91 RIQLFEEE 98 (284)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 17
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=95.53 E-value=0.067 Score=61.00 Aligned_cols=43 Identities=23% Similarity=0.262 Sum_probs=22.1
Q ss_pred chhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhh
Q psy14534 99 LPTIQREISKLEFGVAQINSTLQVVNETRESDANYLKSTVSTL 141 (423)
Q Consensus 99 ip~~~~EI~e~e~~l~q~ts~l~~~~Ee~~n~s~~i~s~~~si 141 (423)
+..++.||.++++++.++..+.+.+.|....+..+++.++.++
T Consensus 986 v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L 1028 (1080)
T 2dfs_A 986 VLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSEL 1028 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555555544444444333333
No 18
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=95.46 E-value=0.028 Score=64.46 Aligned_cols=43 Identities=12% Similarity=0.088 Sum_probs=21.4
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHH
Q psy14534 21 TKHHLEKEQHVINHKMKTLQAINEEILQRISHLETSSQTNVKT 63 (423)
Q Consensus 21 ~~~~le~~~~~~~~~~~~l~~~~~~~~~r~~~~e~~~~~l~~~ 63 (423)
++..|+.+...+...+..+++..+++.+++..|+.+...+..+
T Consensus 858 El~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~ 900 (1184)
T 1i84_S 858 EMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEK 900 (1184)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555444455555555555544444433
No 19
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=95.43 E-value=0.024 Score=64.98 Aligned_cols=38 Identities=5% Similarity=0.067 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhccc
Q psy14534 31 VINHKMKTLQAINEEILQRISHLETSSQTNVKTLFNIT 68 (423)
Q Consensus 31 ~~~~~~~~l~~~~~~~~~r~~~~e~~~~~l~~~~~n~s 68 (423)
.+.+++..++...+.+.+.+..++.....|..+...+.
T Consensus 861 ~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~ 898 (1184)
T 1i84_S 861 AKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQ 898 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444433333344444444444444443333333
No 20
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=95.09 E-value=1.7 Score=41.29 Aligned_cols=7 Identities=14% Similarity=0.344 Sum_probs=4.3
Q ss_pred ccccCCc
Q psy14534 250 VLCDEHH 256 (423)
Q Consensus 250 v~Cd~~G 256 (423)
++|+.=|
T Consensus 223 v~Cp~Cg 229 (256)
T 3na7_A 223 ITCPYCG 229 (256)
T ss_dssp EECTTTC
T ss_pred EECCCCC
Confidence 5777544
No 21
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=94.26 E-value=0.37 Score=55.02 Aligned_cols=29 Identities=10% Similarity=0.208 Sum_probs=12.5
Q ss_pred HHHHHHhhhhhhhhhhhhhhhhhhhhhhh
Q psy14534 102 IQREISKLEFGVAQINSTLQVVNETRESD 130 (423)
Q Consensus 102 ~~~EI~e~e~~l~q~ts~l~~~~Ee~~n~ 130 (423)
.+.+|+.++++++.+..+++...+|.+.+
T Consensus 982 ~~~~v~~L~~e~~~l~~~~~~~~ke~~~l 1010 (1080)
T 2dfs_A 982 ATNRVLSLQEEIAKLRKELHQTQTEKKTI 1010 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444433333333
No 22
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=93.21 E-value=2.2 Score=40.44 Aligned_cols=111 Identities=10% Similarity=0.091 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhccccccchhhhhhhhHHHHHHHHHHHHHHhh-----hcchhH
Q psy14534 28 EQHVINHKMKTLQAINEEILQRISHLETSSQTNVKTLFNITKQISGVEHLHSSMMELLESIETIENKVD-----YNLPTI 102 (423)
Q Consensus 28 ~~~~~~~~~~~l~~~~~~~~~r~~~~e~~~~~l~~~~~n~s~q~~~~~k~~~s~~el~e~ve~~~~~~d-----~~ip~~ 102 (423)
.+..+.+++..+.+....+.+.+..+......+..++..+.++++.+ ...+-++-..+...+.+.+ +-+..+
T Consensus 19 ~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~---e~~i~~~~~ri~~~~~~l~~v~~~kE~~aL 95 (256)
T 3na7_A 19 EIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKN---EQTLQDTNAKIASIQKKMSEIKSERELRSL 95 (256)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHCSSSSHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHccCCHHHHHHH
Confidence 33333444444433344444444444444444444444444444322 2222233333333333332 112223
Q ss_pred HHHHHhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhh
Q psy14534 103 QREISKLEFGVAQINSTLQVVNETRESDANYLKSTVSTL 141 (423)
Q Consensus 103 ~~EI~e~e~~l~q~ts~l~~~~Ee~~n~s~~i~s~~~si 141 (423)
.+||.-++..+...-..+..+.+.+..+...+......+
T Consensus 96 ~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l 134 (256)
T 3na7_A 96 NIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEM 134 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444444444
No 23
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=91.89 E-value=1.6 Score=44.37 Aligned_cols=43 Identities=12% Similarity=0.141 Sum_probs=24.3
Q ss_pred hhhhhhhHHHHHHHHHHHHHHhhhcchhHHHHHHhhhhhhhhh
Q psy14534 74 VEHLHSSMMELLESIETIENKVDYNLPTIQREISKLEFGVAQI 116 (423)
Q Consensus 74 ~~k~~~s~~el~e~ve~~~~~~d~~ip~~~~EI~e~e~~l~q~ 116 (423)
+++...++.++...++...+.+..-...++.||.+++++-+++
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (487)
T 3oja_A 412 LRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARL 454 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhh
Confidence 4455555556666666666666555555555555555544433
No 24
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=91.64 E-value=1 Score=46.79 Aligned_cols=21 Identities=14% Similarity=0.036 Sum_probs=8.3
Q ss_pred HHHHHHhhhhhhhhhhhhhhh
Q psy14534 102 IQREISKLEFGVAQINSTLQV 122 (423)
Q Consensus 102 ~~~EI~e~e~~l~q~ts~l~~ 122 (423)
+.++++++++..+....+++.
T Consensus 507 l~~~~~~~~~~~~~~~~~~~~ 527 (597)
T 3oja_B 507 LNKVFTHLKERQAFKLRETQA 527 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhHHHHHH
Confidence 344444444433333333333
No 25
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=88.91 E-value=12 Score=47.56 Aligned_cols=38 Identities=11% Similarity=0.142 Sum_probs=23.2
Q ss_pred HHHHHHhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHh
Q psy14534 102 IQREISKLEFGVAQINSTLQVVNETRESDANYLKSTVS 139 (423)
Q Consensus 102 ~~~EI~e~e~~l~q~ts~l~~~~Ee~~n~s~~i~s~~~ 139 (423)
++.+++++|.+++.+.++|...++++..+...|+..-.
T Consensus 2012 kr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~ 2049 (3245)
T 3vkg_A 2012 LREEVEQLENAANELKLKQDEIVATITALEKSIATYKE 2049 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777777777666666666666555554444433
No 26
>4ae2_A Procollagen III, collagen alpha-1(III) chain; structural protein, fibrillar collagen, extracellular matrix fibrosis; 1.68A {Homo sapiens} PDB: 4aej_A* 4ak3_A
Probab=88.39 E-value=0.14 Score=49.14 Aligned_cols=30 Identities=17% Similarity=0.300 Sum_probs=22.6
Q ss_pred CCCCCC--------CCCceEEEECCCc-------ccccCC--ceEEE
Q psy14534 231 LPNDCE--------GHSGLQLISLGRS-------VLCDEH--HWMTI 260 (423)
Q Consensus 231 ~p~dC~--------~~sGvY~I~p~~~-------v~Cd~~--GWTVI 260 (423)
..++|. ..||.|.|.|.++ |||+|. +|+|+
T Consensus 48 PARtC~dl~~~~p~~~sG~YwIDPngg~~~dai~V~Cnmt~g~tci~ 94 (256)
T 4ae2_A 48 PARNCRDLKFCHPELKSGEYWVDPNQGCKLDAIKVFCNMETGETCIS 94 (256)
T ss_dssp CBSCHHHHHHHCTTCCSEEEEECTTCSSGGGCEEEEEETTTTEEEEC
T ss_pred ccccHHHHHHcCCCCCCCCEEECCCCCCCCCCEEEEeEeecCCcEEe
Confidence 347887 4799999999763 899993 46654
No 27
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=87.91 E-value=14 Score=32.94 Aligned_cols=57 Identities=14% Similarity=0.091 Sum_probs=30.0
Q ss_pred hhhhhhhhhhhhhhHHHH----HHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy14534 117 NSTLQVVNETRESDANYL----KSTVSTLATLQEKVEANNIIMQALSDANYLKSTVSTLATLQEKV 178 (423)
Q Consensus 117 ts~l~~~~Ee~~n~s~~i----~s~~~sis~lqek~~~~~kv~~le~Q~~~I~~l~~~v~~~~~ql 178 (423)
-+....+.-|+.+++.++ |.|+..- -.++..++.++.+++.|+..-.-++ ..++.||
T Consensus 78 E~~~~~ie~ElEeLTasLFeEAN~MVa~a--r~~~~~~e~r~~~L~~ql~e~~~~l---~~lq~ql 138 (154)
T 2ocy_A 78 EEEADKLNKEVEDLTASLFDEANNMVADA--RKEKYAIEILNKRLTEQLREKDTLL---DTLTLQL 138 (154)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Confidence 344455666666666655 4444443 3344445666666666655444443 4444444
No 28
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=87.60 E-value=4 Score=41.35 Aligned_cols=26 Identities=8% Similarity=0.119 Sum_probs=13.7
Q ss_pred hhHHHHHhhHHHHHHHHHHHHHHHHH
Q psy14534 16 KLFLKTKHHLEKEQHVINHKMKTLQA 41 (423)
Q Consensus 16 ~~~~~~~~~le~~~~~~~~~~~~l~~ 41 (423)
.+|.++=+.++..++.|+..|+.+++
T Consensus 56 g~Ldk~er~~~~rIe~L~~~L~~~s~ 81 (390)
T 1deq_A 56 GLIDEVDQDFTSRINKLRDSLFNYQK 81 (390)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555555544
No 29
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=86.30 E-value=17 Score=46.11 Aligned_cols=39 Identities=13% Similarity=0.155 Sum_probs=22.9
Q ss_pred hhhhhhhhhhhhhhhhhhhhHHHHHHHHhhhHHHHHHHH
Q psy14534 111 FGVAQINSTLQVVNETRESDANYLKSTVSTLATLQEKVE 149 (423)
Q Consensus 111 ~~l~q~ts~l~~~~Ee~~n~s~~i~s~~~sis~lqek~~ 149 (423)
.++++..++|...+++++.....|+..-+.|..||++-+
T Consensus 2014 ~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~ 2052 (3245)
T 3vkg_A 2014 EEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYA 2052 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555556666666666666666666666665555543
No 30
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=85.68 E-value=13 Score=33.58 Aligned_cols=38 Identities=8% Similarity=0.134 Sum_probs=23.1
Q ss_pred hhhhhhhhhhhhhhhhHHHHHHHHhhhHHHHHHHHHHH
Q psy14534 115 QINSTLQVVNETRESDANYLKSTVSTLATLQEKVEANN 152 (423)
Q Consensus 115 q~ts~l~~~~Ee~~n~s~~i~s~~~sis~lqek~~~~~ 152 (423)
.+...++.+.+|++.++..+.....+...|+|++..-.
T Consensus 94 elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lE 131 (168)
T 3o0z_A 94 DLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSE 131 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33345666777777776666666666666666664433
No 31
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=85.09 E-value=3.8 Score=43.16 Aligned_cols=36 Identities=8% Similarity=0.079 Sum_probs=22.9
Q ss_pred hhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14534 15 GKLFLKTKHHLEKEQHVINHKMKTLQAINEEILQRI 50 (423)
Q Consensus 15 ~~~~~~~~~~le~~~~~~~~~~~~l~~~~~~~~~r~ 50 (423)
+-+|.+|=+.+-+.+..|+.++.++++.......-+
T Consensus 52 QglLdkqErDltkrINELKnqLEdlsKnsKdseqy~ 87 (562)
T 3ghg_A 52 KGLIDEVNQDFTNRINKLKNSLFEYQKNNKDSHSLT 87 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred hhhHHhhcCcHHHHHHHHHHHHHHHHhhchhHHHHH
Confidence 345666777777777777777777766544444433
No 32
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=85.05 E-value=11 Score=32.19 Aligned_cols=45 Identities=18% Similarity=0.186 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhcccccc
Q psy14534 27 KEQHVINHKMKTLQAINEEILQRISHLETSSQTNVKTLFNITKQI 71 (423)
Q Consensus 27 ~~~~~~~~~~~~l~~~~~~~~~r~~~~e~~~~~l~~~~~n~s~q~ 71 (423)
..+..++.+++.|+...+.-..+.+.||.....|..+...+..|+
T Consensus 13 ~E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL 57 (129)
T 2fxo_A 13 KEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQV 57 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555554444455555555555555554444444
No 33
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=84.99 E-value=6.7 Score=41.29 Aligned_cols=11 Identities=18% Similarity=0.447 Sum_probs=0.0
Q ss_pred ccccccchhhh
Q psy14534 286 SEFWIGNDALH 296 (423)
Q Consensus 286 gEfWLGLe~ih 296 (423)
.|+=||.|+.-
T Consensus 421 kel~ig~ekvt 431 (562)
T 3ghg_A 421 KELRTGKEKVT 431 (562)
T ss_dssp -----------
T ss_pred ceeeccccccc
Confidence 46677777764
No 34
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=84.40 E-value=2.2 Score=34.27 Aligned_cols=39 Identities=21% Similarity=0.364 Sum_probs=20.8
Q ss_pred HHHHHHHH-HHHHhhhcchhHHHHHHhhhhhhhhhhhhhhh
Q psy14534 83 ELLESIET-IENKVDYNLPTIQREISKLEFGVAQINSTLQV 122 (423)
Q Consensus 83 el~e~ve~-~~~~~d~~ip~~~~EI~e~e~~l~q~ts~l~~ 122 (423)
+||+++|. ++.++ .+|.-++-||.++.+.....+.+.+.
T Consensus 6 ElleqLE~KIq~av-dtI~lLqmEieELKekN~~L~~e~~e 45 (81)
T 2jee_A 6 EVFEKLEAKVQQAI-DTITLLQMEIEELKEKNNSLSQEVQN 45 (81)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555542 34444 34444566887776665555444443
No 35
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=79.80 E-value=35 Score=30.84 Aligned_cols=15 Identities=33% Similarity=0.248 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHh
Q psy14534 81 MMELLESIETIENKV 95 (423)
Q Consensus 81 ~~el~e~ve~~~~~~ 95 (423)
..||-+.+-.++..-
T Consensus 50 ~rELq~~~~~L~~~k 64 (168)
T 3o0z_A 50 NRELQERNRILENSK 64 (168)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 345555555555443
No 36
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=77.94 E-value=37 Score=30.17 Aligned_cols=34 Identities=21% Similarity=0.188 Sum_probs=24.8
Q ss_pred HHHHHHHHHHhhhhhhhhhHHHHHHhhccccccc
Q psy14534 39 LQAINEEILQRISHLETSSQTNVKTLFNITKQIS 72 (423)
Q Consensus 39 l~~~~~~~~~r~~~~e~~~~~l~~~~~n~s~q~~ 72 (423)
++...++-.+|+...|.....|..++.++.+.+.
T Consensus 26 ~E~dLEraEERae~aE~k~~eLEeeL~~v~~nlK 59 (155)
T 2efr_A 26 LKKLLERAEERAELSEGKSAELEEELKTVTNNLK 59 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 6666777788888777777777777777765553
No 37
>3thf_A Protein shroom; coiled-coil, anti-parallel, helical, RHO-kinase, actin-bindi protein binding, cytoskeleton regulator; 2.70A {Drosophila melanogaster}
Probab=76.48 E-value=47 Score=30.54 Aligned_cols=81 Identities=12% Similarity=0.120 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHhhhcchhHHHHHHhhhhhhhhhhhhh-----hhhhhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q psy14534 84 LLESIETIENKVDYNLPTIQREISKLEFGVAQINSTL-----QVVNETRESDANYLKSTVSTLATLQEKVEANNIIMQAL 158 (423)
Q Consensus 84 l~e~ve~~~~~~d~~ip~~~~EI~e~e~~l~q~ts~l-----~~~~Ee~~n~s~~i~s~~~sis~lqek~~~~~kv~~le 158 (423)
.-+..+.|..+. +.+..=..+-+++.+++.+.-..+ +.+.+|.=--....-.|-..+ +-+..++..||.--+
T Consensus 99 ~~~Er~sL~~K~-~~L~~Q~EDAkeLKe~ldRRe~~V~~iL~~~L~~eql~DY~~fv~mKa~L--l~eqReLddkIklge 175 (190)
T 3thf_A 99 RQQERGALESKR-DLLYEQMEEAQRLKSDIERRGVSIAGLLAKNLSADMCADYDYFINMKAKL--IADARDLAVRIKGSE 175 (190)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH--HHHHHhHHHHHHhhH
Confidence 345555555555 334444556666666666554444 444444433344444444455 677777777777777
Q ss_pred hhHHHHHHH
Q psy14534 159 SDANYLKST 167 (423)
Q Consensus 159 ~Q~~~I~~l 167 (423)
+|+..|.+.
T Consensus 176 EQL~~L~~s 184 (190)
T 3thf_A 176 EQLSSLSDA 184 (190)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHHHh
Confidence 777776543
No 38
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=75.31 E-value=4.8 Score=35.25 Aligned_cols=48 Identities=13% Similarity=-0.000 Sum_probs=25.5
Q ss_pred hhhhhhhhhhhhhHHHH----HHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHH
Q psy14534 118 STLQVVNETRESDANYL----KSTVSTLATLQEKVEANNIIMQALSDANYLKST 167 (423)
Q Consensus 118 s~l~~~~Ee~~n~s~~i----~s~~~sis~lqek~~~~~kv~~le~Q~~~I~~l 167 (423)
+....+.-|+.+++.++ |.|+..- -.++..+..++.+++.|+..-..+
T Consensus 67 ~~~~~ie~ElE~LTasLFeEAN~MVa~a--r~~~~~~e~r~~~L~~ql~e~e~l 118 (135)
T 2e7s_A 67 EEADKLNKEVEDLTASLFDEANNLVADA--RMEKYAIEILNKRLTEQLREKDML 118 (135)
T ss_dssp HTTHHHHHHHHHHHHHHHHHHHHHHHHT--THHHHHHHHHHHHHHHTTTHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666554 4454444 334444566666666665444333
No 39
>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens}
Probab=75.18 E-value=9.1 Score=35.89 Aligned_cols=27 Identities=7% Similarity=0.057 Sum_probs=17.1
Q ss_pred cchhhHHHHHhhHHHHHHHHHHHHHHH
Q psy14534 13 RNGKLFLKTKHHLEKEQHVINHKMKTL 39 (423)
Q Consensus 13 r~~~~~~~~~~~le~~~~~~~~~~~~l 39 (423)
-++|.|+...++|++.+..+.++-+.+
T Consensus 14 ~~~r~Lr~~~R~LdR~~~kle~eEkk~ 40 (218)
T 3frt_A 14 EWSLKIRKEMRVVDRQIRDIQREEEKV 40 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777777777776666654443
No 40
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=74.58 E-value=38 Score=29.39 Aligned_cols=14 Identities=0% Similarity=-0.038 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHh
Q psy14534 82 MELLESIETIENKV 95 (423)
Q Consensus 82 ~el~e~ve~~~~~~ 95 (423)
+-+|-.+...++-+
T Consensus 58 ~aVLaALNiadEl~ 71 (138)
T 3hnw_A 58 RTDMMYLNIADDYF 71 (138)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444444
No 41
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=72.52 E-value=17 Score=37.14 Aligned_cols=16 Identities=25% Similarity=0.532 Sum_probs=9.7
Q ss_pred ccccccchhhhhhhccCcceEEE
Q psy14534 286 SEFWIGNDALHRLTSQDNMSLRI 308 (423)
Q Consensus 286 gEfWLGLe~ih~LT~~~~~~L~I 308 (423)
..|.+|-| ...|.|.|
T Consensus 263 ~~F~V~~E-------~~~Y~L~~ 278 (409)
T 1m1j_C 263 AVFKVGTE-------EDKYRLTY 278 (409)
T ss_dssp ESCEECCT-------TTTTCEEC
T ss_pred eeEEecCc-------cCCeEEEE
Confidence 46778766 34566654
No 42
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=71.68 E-value=4 Score=33.52 Aligned_cols=18 Identities=17% Similarity=0.318 Sum_probs=8.0
Q ss_pred HhhHHHHHHHHHHHHHHH
Q psy14534 22 KHHLEKEQHVINHKMKTL 39 (423)
Q Consensus 22 ~~~le~~~~~~~~~~~~l 39 (423)
+..++..+..+..++..|
T Consensus 5 ~~~~~~~~~~~~~~l~~L 22 (112)
T 1l8d_A 5 LEELETKKTTIEEERNEI 22 (112)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444444
No 43
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=66.51 E-value=10 Score=36.09 Aligned_cols=87 Identities=16% Similarity=0.160 Sum_probs=55.9
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhccccccchhhhhhhhHHHHHHHHHHHHHHhhh
Q psy14534 18 FLKTKHHLEKEQHVINHKMKTLQAINEEILQRISHLETSSQTNVKTLFNITKQISGVEHLHSSMMELLESIETIENKVDY 97 (423)
Q Consensus 18 ~~~~~~~le~~~~~~~~~~~~l~~~~~~~~~r~~~~e~~~~~l~~~~~n~s~q~~~~~k~~~s~~el~e~ve~~~~~~d~ 97 (423)
|+.++.++|..++.|+..+.++.+-.+.+.+||+.+|..++.|-+.+--..=.|.++-+-.+..-.=+ -..|++-+..
T Consensus 4 lnsRvd~~EErIs~le~rleei~q~eq~~ekrik~ne~sL~dL~d~iRr~NIRIiGVPEgee~~~kga--enlf~eII~E 81 (233)
T 2yko_A 4 LRSRCDQLEERVSAAEDEINEIKREGKFREKRIKRNEQSLQEIWDYVKRPNLRLIGVPESDVENGTKL--ENTLQDIIQE 81 (233)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTEEEEESCCCCTTCCHHHH--HHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccceeEeecCCCcccccccH--HHHHHHHHHH
Confidence 34567778888888888888887777778889999999998888776555555655555443111001 1235566777
Q ss_pred cchhHHHHH
Q psy14534 98 NLPTIQREI 106 (423)
Q Consensus 98 ~ip~~~~EI 106 (423)
++|.+++|.
T Consensus 82 nfPnL~ke~ 90 (233)
T 2yko_A 82 NFPNLARQA 90 (233)
T ss_dssp HCTTCC---
T ss_pred hCCCCcccc
Confidence 889987765
No 44
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=66.42 E-value=5.7 Score=31.74 Aligned_cols=39 Identities=21% Similarity=0.348 Sum_probs=19.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHH
Q psy14534 24 HLEKEQHVINHKMKTLQAINEEILQRISHLETSSQTNVK 62 (423)
Q Consensus 24 ~le~~~~~~~~~~~~l~~~~~~~~~r~~~~e~~~~~l~~ 62 (423)
+|+..-..+-.+|..++-.+..+.+||+.+|.....-+.
T Consensus 3 ~l~~e~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~ 41 (79)
T 3cvf_A 3 HMAAEREETQQKVQDLETRNAELEHQLRAMERSLEEARA 41 (79)
T ss_dssp -------CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 444555555555666666666677777777766544443
No 45
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=66.01 E-value=14 Score=27.09 Aligned_cols=36 Identities=14% Similarity=0.091 Sum_probs=24.7
Q ss_pred hhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhHHHHH
Q psy14534 100 PTIQREISKLEFGVAQINSTLQVVNETRESDANYLK 135 (423)
Q Consensus 100 p~~~~EI~e~e~~l~q~ts~l~~~~Ee~~n~s~~i~ 135 (423)
...+.++.+....+.+++..|+.++++|..+..+|.
T Consensus 22 ~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~qi~ 57 (60)
T 3htk_A 22 SLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQNE 57 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446677777777777777777777777766655554
No 46
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=65.88 E-value=9.7 Score=30.99 Aligned_cols=68 Identities=12% Similarity=0.233 Sum_probs=37.2
Q ss_pred HHHHhhhhhhhhhHHHHHHhhccccccchhhhhhhhHHHHHHHHHHHHHHhhhcchhHHHHHHhhhhhhhhhhhhhhhhh
Q psy14534 45 EILQRISHLETSSQTNVKTLFNITKQISGVEHLHSSMMELLESIETIENKVDYNLPTIQREISKLEFGVAQINSTLQVVN 124 (423)
Q Consensus 45 ~~~~r~~~~e~~~~~l~~~~~n~s~q~~~~~k~~~s~~el~e~ve~~~~~~d~~ip~~~~EI~e~e~~l~q~ts~l~~~~ 124 (423)
.-.++||+||.+=+.|..++.-+..+ ....+...|+..|.++++.|..+..+-+++-.++..+.
T Consensus 20 syIdKVR~LEqqN~~Le~~i~~l~~~----------------~~~~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~ 83 (93)
T 3s4r_A 20 NLIDKVRFLEQQNKILLAELEQLKGQ----------------GKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLA 83 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc----------------cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34578999998877776555322211 12334455555566666666555555555544444444
Q ss_pred hhhh
Q psy14534 125 ETRE 128 (423)
Q Consensus 125 Ee~~ 128 (423)
+++.
T Consensus 84 ~~~~ 87 (93)
T 3s4r_A 84 EDIM 87 (93)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 47
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=65.79 E-value=52 Score=27.78 Aligned_cols=33 Identities=12% Similarity=0.083 Sum_probs=18.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhH
Q psy14534 150 ANNIIMQALSDANYLKSTVSTLATLQEKVEANN 182 (423)
Q Consensus 150 ~~~kv~~le~Q~~~I~~l~~~v~~~~~ql~~q~ 182 (423)
++.++..++.++..++.-......-++.|++.+
T Consensus 80 ~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvK 112 (129)
T 3tnu_B 80 ARNKLAELEEALQKAKQDMARLLREYQELMNTK 112 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666655544444444555444
No 48
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=65.68 E-value=46 Score=27.07 Aligned_cols=84 Identities=8% Similarity=0.211 Sum_probs=61.1
Q ss_pred hhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhccccccchhhhhhhhHHHHHHHHHHHHHHh
Q psy14534 16 KLFLKTKHHLEKEQHVINHKMKTLQAINEEILQRISHLETSSQTNVKTLFNITKQISGVEHLHSSMMELLESIETIENKV 95 (423)
Q Consensus 16 ~~~~~~~~~le~~~~~~~~~~~~l~~~~~~~~~r~~~~e~~~~~l~~~~~n~s~q~~~~~k~~~s~~el~e~ve~~~~~~ 95 (423)
.-+.+.|..|+..-..+..++..|++..+.++.-|..++.+..+|...=-.-= ...+..+-+++++.+...+++..+
T Consensus 7 ~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w---~eyn~~~~ql~e~~dE~~Sl~~q~ 83 (96)
T 3q8t_A 7 EQLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQ---REYSEFKRQQLELDDELKSVENQM 83 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677888888888888888999988888999999999998888864322111 124456666778888888888887
Q ss_pred hhcchhH
Q psy14534 96 DYNLPTI 102 (423)
Q Consensus 96 d~~ip~~ 102 (423)
++....+
T Consensus 84 ~~~~~qL 90 (96)
T 3q8t_A 84 RYAQMQL 90 (96)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6655443
No 49
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=64.77 E-value=72 Score=33.11 Aligned_cols=22 Identities=5% Similarity=0.140 Sum_probs=8.5
Q ss_pred HHhhhcchhHHHHHHhhhhhhh
Q psy14534 93 NKVDYNLPTIQREISKLEFGVA 114 (423)
Q Consensus 93 ~~~d~~ip~~~~EI~e~e~~l~ 114 (423)
..|-+.|-+|++-+.+....-.
T Consensus 61 rdv~~rI~kLkn~L~~~s~s~~ 82 (491)
T 1m1j_A 61 QNYSQRIDNIRQQLADSQNKYK 82 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTT
T ss_pred hhHHHHHHHHHHHHHHHHhhcc
Confidence 3333333344444443333333
No 50
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=64.25 E-value=47 Score=27.10 Aligned_cols=34 Identities=24% Similarity=0.319 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHH
Q psy14534 28 EQHVINHKMKTLQAINEEILQRISHLETSSQTNV 61 (423)
Q Consensus 28 ~~~~~~~~~~~l~~~~~~~~~r~~~~e~~~~~l~ 61 (423)
+|..++++|..|+..-+.-.+|...+|...+.+-
T Consensus 3 ~MdaIKkKm~~lk~e~e~a~drae~~e~~~k~~e 36 (101)
T 3u1c_A 3 HMDAIKKKMQMLKLDKENALDRAEQAEADKKAAE 36 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777887776666666666666665544443
No 51
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=62.80 E-value=10 Score=31.00 Aligned_cols=37 Identities=16% Similarity=0.261 Sum_probs=16.5
Q ss_pred hHHHHHHhhhhhhhhhhhhhhhhhhhhhhhHHHHHHH
Q psy14534 101 TIQREISKLEFGVAQINSTLQVVNETRESDANYLKST 137 (423)
Q Consensus 101 ~~~~EI~e~e~~l~q~ts~l~~~~Ee~~n~s~~i~s~ 137 (423)
.+...+..++..++.+...+..+.+++.++...+.++
T Consensus 74 ~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~ 110 (117)
T 2zqm_A 74 ELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSA 110 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444444444444443
No 52
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=62.62 E-value=45 Score=26.03 Aligned_cols=69 Identities=14% Similarity=0.164 Sum_probs=29.3
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhccccccchhhhhhhhHHHHHHHHHHHHH
Q psy14534 22 KHHLEKEQHVINHKMKTLQAINEEILQRISHLETSSQTNVKTLFNITKQISGVEHLHSSMMELLESIETIEN 93 (423)
Q Consensus 22 ~~~le~~~~~~~~~~~~l~~~~~~~~~r~~~~e~~~~~l~~~~~n~s~q~~~~~k~~~s~~el~e~ve~~~~ 93 (423)
|..|...-.....+...++...+...+|...+|.+...|.+.|..+-.+ +|++.+.+.+....++.-+.
T Consensus 8 m~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~e---ld~~ee~l~~a~~kLeeaek 76 (81)
T 1ic2_A 8 MQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDE---LDKYSESLKDAQEKLELADK 76 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333344444444444445555555444444444433322 24444444444444443333
No 53
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=62.55 E-value=49 Score=28.08 Aligned_cols=33 Identities=6% Similarity=-0.021 Sum_probs=18.2
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhH
Q psy14534 150 ANNIIMQALSDANYLKSTVSTLATLQEKVEANN 182 (423)
Q Consensus 150 ~~~kv~~le~Q~~~I~~l~~~v~~~~~ql~~q~ 182 (423)
++.++..++.++..++.-......-++.|++.+
T Consensus 82 ~q~~i~~lE~eL~~~r~em~~ql~EYq~Ll~vK 114 (131)
T 3tnu_A 82 IQEMIGSVEEQLAQLRCEMEQQNQEYKILLDVK 114 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666677666665554444445555444
No 54
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Probab=62.43 E-value=44 Score=33.63 Aligned_cols=18 Identities=11% Similarity=0.119 Sum_probs=9.3
Q ss_pred HHHHHhhHHHHHHHHHHH
Q psy14534 18 FLKTKHHLEKEQHVINHK 35 (423)
Q Consensus 18 ~~~~~~~le~~~~~~~~~ 35 (423)
+..+|..|..+...+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~ 24 (365)
T 1gqe_A 7 VNNRIQDLTERSDVLRGY 24 (365)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 445555665555544443
No 55
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=62.16 E-value=47 Score=26.97 Aligned_cols=34 Identities=21% Similarity=0.300 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHH
Q psy14534 28 EQHVINHKMKTLQAINEEILQRISHLETSSQTNV 61 (423)
Q Consensus 28 ~~~~~~~~~~~l~~~~~~~~~r~~~~e~~~~~l~ 61 (423)
+|..++++|..|+..-+.-.+|...+|...+.+-
T Consensus 3 ~md~iKkKm~~lk~e~e~a~d~ae~~e~~~k~~e 36 (101)
T 3u59_A 3 SMEAIKKKMQMLKLDKENAIDRAEQAEADKKQAE 36 (101)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667788888887766677777766666554443
No 56
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=62.04 E-value=54 Score=34.04 Aligned_cols=16 Identities=25% Similarity=0.441 Sum_probs=9.7
Q ss_pred ccccccchhhhhhhccCcceEEE
Q psy14534 286 SEFWIGNDALHRLTSQDNMSLRI 308 (423)
Q Consensus 286 gEfWLGLe~ih~LT~~~~~~L~I 308 (423)
..|.||.| ...|.|.|
T Consensus 331 ~~F~V~~E-------~~~Y~L~l 346 (464)
T 1m1j_B 331 GGFTIHNE-------GNKYQLSV 346 (464)
T ss_dssp EEEEECCG-------GGTTCEEE
T ss_pred ccEEECCc-------ccceeeec
Confidence 35778766 34566654
No 57
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A
Probab=61.94 E-value=96 Score=28.34 Aligned_cols=49 Identities=10% Similarity=0.002 Sum_probs=33.0
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhcccc
Q psy14534 21 TKHHLEKEQHVINHKMKTLQAINEEILQRISHLETSSQTNVKTLFNITK 69 (423)
Q Consensus 21 ~~~~le~~~~~~~~~~~~l~~~~~~~~~r~~~~e~~~~~l~~~~~n~s~ 69 (423)
+...+++....+...+..|++......+.++.+-..+..++..+..+-.
T Consensus 53 ~Fe~~~~~f~~~e~~~~~l~k~~k~y~~~~~~~~~~~~~l~~~~~~l~~ 101 (251)
T 2fic_A 53 QFEQCVQNFNKQLTEGTRLQKDLRTYLASVKAMHEASKKLNECLQEVYE 101 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4455666666666677777777777777777776777777776666443
No 58
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=61.91 E-value=69 Score=32.07 Aligned_cols=18 Identities=6% Similarity=-0.097 Sum_probs=7.9
Q ss_pred HHhhHHHHHHHHHHHHHH
Q psy14534 157 ALSDANYLKSTVSTLATL 174 (423)
Q Consensus 157 le~Q~~~I~~l~~~v~~~ 174 (423)
|+++...|+.+...+..+
T Consensus 445 ~~~~~~~~~~~~~~~~~~ 462 (471)
T 3mq9_A 445 VEELEGEITTLNHKLQDA 462 (471)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444433333
No 59
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=61.69 E-value=29 Score=31.85 Aligned_cols=25 Identities=8% Similarity=0.021 Sum_probs=15.9
Q ss_pred hHHHHHhhHHHHHHHHHHHHHHHHH
Q psy14534 17 LFLKTKHHLEKEQHVINHKMKTLQA 41 (423)
Q Consensus 17 ~~~~~~~~le~~~~~~~~~~~~l~~ 41 (423)
.+.++|.++|+..+.|..+...|..
T Consensus 46 ELE~eL~~~Ek~~~~L~~~~~~L~~ 70 (189)
T 2v71_A 46 ELEAQLVQAEQRNRDLQADNQRLKY 70 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677777777776666655543
No 60
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=61.31 E-value=21 Score=28.00 Aligned_cols=43 Identities=12% Similarity=0.095 Sum_probs=27.9
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHh
Q psy14534 22 KHHLEKEQHVINHKMKTLQAINEEILQRISHLETSSQTNVKTL 64 (423)
Q Consensus 22 ~~~le~~~~~~~~~~~~l~~~~~~~~~r~~~~e~~~~~l~~~~ 64 (423)
|.+|+.......+++...+...+.++.+|..+|.+.+.|..++
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseL 63 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNEL 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666666665566666667776666666666555
No 61
>2ch7_A Methyl-accepting chemotaxis protein; receptor, four-helix bundle, signal transduction, methyl-accepting receptor; 2.5A {Thermotoga maritima} SCOP: h.4.5.1 PDB: 2ch7_B
Probab=60.66 E-value=1.1e+02 Score=28.50 Aligned_cols=20 Identities=10% Similarity=0.129 Sum_probs=11.3
Q ss_pred HHHhhHHHHHHHHHHHHHHH
Q psy14534 20 KTKHHLEKEQHVINHKMKTL 39 (423)
Q Consensus 20 ~~~~~le~~~~~~~~~~~~l 39 (423)
++|..+-..+..+..+-+.|
T Consensus 124 ~~i~~i~~~I~~Ia~qtnll 143 (309)
T 2ch7_A 124 EEITSFVETINAIAEQTNLL 143 (309)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34555556666666665443
No 62
>3r84_A Mediator of RNA polymerase II transcription subun; four-helix bundle, nucleus; HET: MSE; 2.05A {Saccharomyces cerevisiae}
Probab=60.25 E-value=17 Score=29.44 Aligned_cols=31 Identities=16% Similarity=0.366 Sum_probs=20.6
Q ss_pred hhhHHHHHHHHHHHHHHhhhcchhHHHHHHhhhhhhhh
Q psy14534 78 HSSMMELLESIETIENKVDYNLPTIQREISKLEFGVAQ 115 (423)
Q Consensus 78 ~~s~~el~e~ve~~~~~~d~~ip~~~~EI~e~e~~l~q 115 (423)
...+-+.|..++...-. +|+||+-+|++++-
T Consensus 46 ~~~t~~fy~tL~~v~v~-------LrkEIk~LdEnig~ 76 (86)
T 3r84_A 46 ENHVKQFYERLDKSTTQ-------LRKEIQLLDENVGT 76 (86)
T ss_dssp HHHHHHHHHHHHHHHHH-------HHHHHHHHHHTBTT
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHccCC
Confidence 34444666666665543 58999999998763
No 63
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=59.15 E-value=30 Score=34.73 Aligned_cols=30 Identities=23% Similarity=0.277 Sum_probs=15.3
Q ss_pred hhHHHHHHhhhhhhhhhhhhhhhhhhhhhh
Q psy14534 100 PTIQREISKLEFGVAQINSTLQVVNETRES 129 (423)
Q Consensus 100 p~~~~EI~e~e~~l~q~ts~l~~~~Ee~~n 129 (423)
++-.+-|+|+|-++.....+|+...-+++.
T Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (471)
T 3mq9_A 439 AQGQKKVEELEGEITTLNHKLQDASAEVER 468 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333345666666555555555544444433
No 64
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=57.66 E-value=7.3 Score=26.56 Aligned_cols=30 Identities=33% Similarity=0.292 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhHHHHHHh
Q psy14534 35 KMKTLQAINEEILQRISHLETSSQTNVKTL 64 (423)
Q Consensus 35 ~~~~l~~~~~~~~~r~~~~e~~~~~l~~~~ 64 (423)
.|++|+..+|++..+...||.+-.+|.+.+
T Consensus 2 RMnQLE~kVEeLl~~~~~Le~EV~RL~~ll 31 (36)
T 1kd8_A 2 EVKQLEAEVEEIESEVWHLENEVARLEKEN 31 (36)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 367777778888888888888877776543
No 65
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=56.90 E-value=92 Score=26.92 Aligned_cols=14 Identities=21% Similarity=0.337 Sum_probs=5.4
Q ss_pred HHHHHhhhhhhhhh
Q psy14534 103 QREISKLEFGVAQI 116 (423)
Q Consensus 103 ~~EI~e~e~~l~q~ 116 (423)
.+||..+..++.++
T Consensus 88 ~kE~~~lK~el~~~ 101 (138)
T 3hnw_A 88 DKEIYDLKHELIAA 101 (138)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33444333333333
No 66
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=56.74 E-value=71 Score=28.36 Aligned_cols=15 Identities=13% Similarity=0.231 Sum_probs=0.0
Q ss_pred hhhhhhHHHHHHHHH
Q psy14534 75 EHLHSSMMELLESIE 89 (423)
Q Consensus 75 ~k~~~s~~el~e~ve 89 (423)
|++.+..-+||+.+.
T Consensus 38 d~~E~~~~~l~~e~~ 52 (152)
T 3a7p_A 38 NDKEAHLNELFQDNS 52 (152)
T ss_dssp ---------------
T ss_pred hhHHHHHHHHHHhhc
Confidence 334444444444444
No 67
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=56.63 E-value=11 Score=25.65 Aligned_cols=30 Identities=30% Similarity=0.311 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhHHHHHHh
Q psy14534 35 KMKTLQAINEEILQRISHLETSSQTNVKTL 64 (423)
Q Consensus 35 ~~~~l~~~~~~~~~r~~~~e~~~~~l~~~~ 64 (423)
.|++|+..+|++..+-..||.+-.+|.+-+
T Consensus 2 RMnQLE~KVEeLl~~~~~Le~eV~RLk~ll 31 (36)
T 1kd8_B 2 KVKQLKAKVEELKSKLWHLKNKVARLKKKN 31 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 367777777777777777777777766543
No 68
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=56.28 E-value=84 Score=25.89 Aligned_cols=50 Identities=14% Similarity=0.183 Sum_probs=34.7
Q ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHH-------HHHHhhhhhhhhhHHHHHHhhc
Q psy14534 17 LFLKTKHHLEKEQHVINHKMKTLQAINE-------EILQRISHLETSSQTNVKTLFN 66 (423)
Q Consensus 17 ~~~~~~~~le~~~~~~~~~~~~l~~~~~-------~~~~r~~~~e~~~~~l~~~~~n 66 (423)
-++++|.+|+..-..++.++..|+.... ......+.++.+...|...+|.
T Consensus 9 ~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFe 65 (97)
T 2eqb_B 9 QLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFD 65 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788999999888888888777755432 2334556667777777766666
No 69
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=56.07 E-value=48 Score=29.36 Aligned_cols=33 Identities=12% Similarity=0.286 Sum_probs=23.8
Q ss_pred HHHHHHhhhcchhHHHHHHhhhhhhhhhhhhhh
Q psy14534 89 ETIENKVDYNLPTIQREISKLEFGVAQINSTLQ 121 (423)
Q Consensus 89 e~~~~~~d~~ip~~~~EI~e~e~~l~q~ts~l~ 121 (423)
+.+...+...+..+.+|+..+|++.++.-++.+
T Consensus 28 e~l~~~l~~~i~q~d~elqQLefq~kr~~~e~~ 60 (150)
T 4dci_A 28 EEAEREISNGIANADQQLAQLEQEGQTVVDQVR 60 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455556667778888888888888877765
No 70
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=55.50 E-value=17 Score=25.79 Aligned_cols=38 Identities=21% Similarity=0.339 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhh
Q psy14534 28 EQHVINHKMKTLQAINEEILQRISHLETSSQTNVKTLF 65 (423)
Q Consensus 28 ~~~~~~~~~~~l~~~~~~~~~r~~~~e~~~~~l~~~~~ 65 (423)
.|..+-.-+.+++.+.+.+++||..||..+..|...+.
T Consensus 3 mQn~mydlvsel~~r~e~LE~Ri~~LE~KLd~L~~~l~ 40 (43)
T 2pnv_A 3 HMNIMYDMISDLNERSEDFEKRIVTLETKLETLIGSIH 40 (43)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556778888888999999999988877776554
No 71
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=55.36 E-value=37 Score=24.10 Aligned_cols=42 Identities=19% Similarity=0.298 Sum_probs=32.2
Q ss_pred hhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q psy14534 15 GKLFLKTKHHLEKEQHVINHKMKTLQAINEEILQRISHLETS 56 (423)
Q Consensus 15 ~~~~~~~~~~le~~~~~~~~~~~~l~~~~~~~~~r~~~~e~~ 56 (423)
+.++++.|.+|.+..-+|.|--.-|+|+.-.+.+-|-.||++
T Consensus 5 naylrkkiarlkkdnlqlerdeqnlekiianlrdeiarlene 46 (52)
T 3he5_B 5 NAYLRKKIARLKKDNLQLERDEQNLEKIIANLRDEIARLENE 46 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHH
Confidence 568888888888888787777777888777777777766654
No 72
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=54.68 E-value=21 Score=36.12 Aligned_cols=51 Identities=16% Similarity=0.134 Sum_probs=40.7
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhccc
Q psy14534 18 FLKTKHHLEKEQHVINHKMKTLQAINEEILQRISHLETSSQTNVKTLFNIT 68 (423)
Q Consensus 18 ~~~~~~~le~~~~~~~~~~~~l~~~~~~~~~r~~~~e~~~~~l~~~~~n~s 68 (423)
+.++|.+|+.+...+.++++.+++.++++.+++..-|..-+.|.+++..+.
T Consensus 8 ~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elk 58 (403)
T 4etp_A 8 LKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELR 58 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 567788888888888888888888888888888888888888877776654
No 73
>2pih_A Protein YMCA; regulate community development, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: a.281.1.1
Probab=54.68 E-value=1.1e+02 Score=26.61 Aligned_cols=92 Identities=12% Similarity=0.142 Sum_probs=50.4
Q ss_pred hHHHHHHHHHHHHHHhhhcchhHHH-----HHHhhhhhhhhhhhhhhhhhhhhhhhHH-----HHHHHHhhhHHHHHHHH
Q psy14534 80 SMMELLESIETIENKVDYNLPTIQR-----EISKLEFGVAQINSTLQVVNETRESDAN-----YLKSTVSTLATLQEKVE 149 (423)
Q Consensus 80 s~~el~e~ve~~~~~~d~~ip~~~~-----EI~e~e~~l~q~ts~l~~~~Ee~~n~s~-----~i~s~~~sis~lqek~~ 149 (423)
+|+.|++..+.|...+ ..-|+++. +--+...++.+.-.+.+.++.++.+... ........+..++++++
T Consensus 5 ~~~~I~d~A~eL~~aI-~eseeyk~yk~A~~~i~~D~eaq~li~eF~~~Q~~~~~~q~~Gk~~~~~e~~~el~~l~~~l~ 83 (151)
T 2pih_A 5 SKKDIVQQARNLAKMI-SETEEVDFFKRAEAQINENDKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQEELE 83 (151)
T ss_dssp CHHHHHHHHHHHHHHH-TTBHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH-HcCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHHHHHHHHHHH
Confidence 3677788888887777 55555532 1112233334444444555555544332 13444455666677777
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHH
Q psy14534 150 ANNIIMQALSDANYLKSTVSTLA 172 (423)
Q Consensus 150 ~~~kv~~le~Q~~~I~~l~~~v~ 172 (423)
.+..|....+....+..+++.|.
T Consensus 84 ~np~V~~y~~Ae~~l~~LL~~I~ 106 (151)
T 2pih_A 84 EIPVIQEFRDSQMEVNDLLQLVA 106 (151)
T ss_dssp HSHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHH
Confidence 77777665555556655554444
No 74
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=54.01 E-value=96 Score=26.16 Aligned_cols=43 Identities=12% Similarity=0.144 Sum_probs=22.5
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHH
Q psy14534 20 KTKHHLEKEQHVINHKMKTLQAINEEILQRISHLETSSQTNVK 62 (423)
Q Consensus 20 ~~~~~le~~~~~~~~~~~~l~~~~~~~~~r~~~~e~~~~~l~~ 62 (423)
+.+..++.....+...+...++....+.+....|..+-..|..
T Consensus 13 ~E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~ 55 (129)
T 2fxo_A 13 KEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQL 55 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555544444555555555555444443
No 75
>4gwp_A Mediator of RNA polymerase II transcription subun; binding sites, mediator complex, models, molecular, phosphor protein structure; 4.20A {Saccharomyces cerevisiae} PDB: 4gwq_A
Probab=53.68 E-value=16 Score=31.11 Aligned_cols=27 Identities=19% Similarity=0.383 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHhhhcchhHHHHHHhhhhhhh
Q psy14534 81 MMELLESIETIENKVDYNLPTIQREISKLEFGVA 114 (423)
Q Consensus 81 ~~el~e~ve~~~~~~d~~ip~~~~EI~e~e~~l~ 114 (423)
+-+++++++..= -.+|+||+-++++++
T Consensus 52 ~~~fY~~Ls~~a-------~~LRkEIK~lDeNiG 78 (115)
T 4gwp_A 52 VKQFYERLDKST-------TQLRKEIQLLDENVG 78 (115)
T ss_dssp HHHHHHHHHHHH-------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHhhccC
Confidence 345555554332 356999999999887
No 76
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=53.24 E-value=49 Score=25.85 Aligned_cols=52 Identities=10% Similarity=0.085 Sum_probs=33.5
Q ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhccc
Q psy14534 17 LFLKTKHHLEKEQHVINHKMKTLQAINEEILQRISHLETSSQTNVKTLFNIT 68 (423)
Q Consensus 17 ~~~~~~~~le~~~~~~~~~~~~l~~~~~~~~~r~~~~e~~~~~l~~~~~n~s 68 (423)
.|++.|+..|..++.|++.++-.-|..|++-+-|=++-++-+-|...+.++.
T Consensus 22 ~Lr~eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl~~l~ 73 (75)
T 3a7o_A 22 ILQKELKSKEQEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQKLSDLK 73 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHHHHHh
Confidence 3455556666666666666666656778888888888888777776665543
No 77
>3ls0_A SLL1638 protein, PSBQ; photosynthesis, four helix bundle; 1.80A {Synechocystis SP} PDB: 3ls1_A
Probab=53.07 E-value=61 Score=28.17 Aligned_cols=25 Identities=8% Similarity=0.179 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhh
Q psy14534 29 QHVINHKMKTLQAINEEILQRISHL 53 (423)
Q Consensus 29 ~~~~~~~~~~l~~~~~~~~~r~~~~ 53 (423)
+.++.++...++.-.+|+.|||..+
T Consensus 22 i~~Iq~y~~~i~~ar~Rl~e~L~~l 46 (133)
T 3ls0_A 22 IAQLQVYVNPIAVARDGMEKRLQGL 46 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3444555555555556666655444
No 78
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=52.83 E-value=98 Score=25.62 Aligned_cols=57 Identities=16% Similarity=0.194 Sum_probs=27.7
Q ss_pred hhhhhhhhhhhhhhhhhhhhHHHHHHHHhhhHHHHHHHHH-HHHHHHHHhhHHHHHHH
Q psy14534 111 FGVAQINSTLQVVNETRESDANYLKSTVSTLATLQEKVEA-NNIIMQALSDANYLKST 167 (423)
Q Consensus 111 ~~l~q~ts~l~~~~Ee~~n~s~~i~s~~~sis~lqek~~~-~~kv~~le~Q~~~I~~l 167 (423)
..++-.|-.|+.-.+-+.+++++|+.-.+.+..+..++.. -.|+-.+|....+|+++
T Consensus 48 ~aiaanTr~lQqh~aRlnsqQrQI~ENhkEMKq~aaqsaaLlsk~yh~ene~ar~kkl 105 (114)
T 2xzr_A 48 KAIAANTRTLQQHSARLDSQQRQINENHKEMKQIEDKIEEILSKIYHIENEIARIKKL 105 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3334444445555555556666665555555444444432 22233455555555554
No 79
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=52.17 E-value=1.2e+02 Score=30.35 Aligned_cols=11 Identities=0% Similarity=-0.335 Sum_probs=3.9
Q ss_pred HHHHHHHHhhh
Q psy14534 131 ANYLKSTVSTL 141 (423)
Q Consensus 131 s~~i~s~~~si 141 (423)
.+..+.+.+.+
T Consensus 434 ~~~~~~~~~~~ 444 (487)
T 3oja_A 434 IRDWDMYQHKE 444 (487)
T ss_dssp HHHHHHHHHHH
T ss_pred hhhhhhhhhHH
Confidence 33333333333
No 80
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=52.05 E-value=24 Score=27.97 Aligned_cols=41 Identities=12% Similarity=0.246 Sum_probs=22.5
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHH
Q psy14534 19 LKTKHHLEKEQHVINHKMKTLQAINEEILQRISHLETSSQT 59 (423)
Q Consensus 19 ~~~~~~le~~~~~~~~~~~~l~~~~~~~~~r~~~~e~~~~~ 59 (423)
-+++.+|--.++.+..++..++.-..++..||+.+|.++++
T Consensus 36 I~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeElkr 76 (77)
T 2w83_C 36 IAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEELRK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35566666677777777777766667777777777777665
No 81
>3nvo_A Zinc transport protein ZNTB; alpha-beta-alpha sandwich, zinc efflux system, membrane, TRA protein; 2.30A {Salmonella enterica} PDB: 3nwi_A
Probab=51.78 E-value=26 Score=32.33 Aligned_cols=21 Identities=24% Similarity=0.289 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHhhhhhhhhh
Q psy14534 37 KTLQAINEEILQRISHLETSS 57 (423)
Q Consensus 37 ~~l~~~~~~~~~r~~~~e~~~ 57 (423)
+..-...+.+.++|..||.+.
T Consensus 158 d~y~~~l~~l~~~id~lE~~l 178 (264)
T 3nvo_A 158 DHASEFIEELHDKIIDLEDNL 178 (264)
T ss_dssp HHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344344566777777777654
No 82
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=51.62 E-value=4.1 Score=35.54 Aligned_cols=9 Identities=11% Similarity=0.242 Sum_probs=3.2
Q ss_pred hhHHHHHHH
Q psy14534 79 SSMMELLES 87 (423)
Q Consensus 79 ~s~~el~e~ 87 (423)
+++.|+-+.
T Consensus 40 ~~~~e~~~~ 48 (151)
T 2zdi_C 40 AEVQTVRET 48 (151)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 83
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=49.38 E-value=15 Score=24.72 Aligned_cols=29 Identities=31% Similarity=0.457 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhHHHHHH
Q psy14534 35 KMKTLQAINEEILQRISHLETSSQTNVKT 63 (423)
Q Consensus 35 ~~~~l~~~~~~~~~r~~~~e~~~~~l~~~ 63 (423)
.|++|+..+|++..+-..||.+..+|.+-
T Consensus 2 RM~QLEdKVEeLl~~n~~Le~EV~RLk~L 30 (34)
T 1uo4_A 2 RMKQIEDKGEEILSKLYHIENELARIKKL 30 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 46778888888888888888888887654
No 84
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=49.36 E-value=58 Score=22.85 Aligned_cols=42 Identities=24% Similarity=0.208 Sum_probs=30.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHh
Q psy14534 23 HHLEKEQHVINHKMKTLQAINEEILQRISHLETSSQTNVKTL 64 (423)
Q Consensus 23 ~~le~~~~~~~~~~~~l~~~~~~~~~r~~~~e~~~~~l~~~~ 64 (423)
.+||...--+..+-..|+|..-|+.+.|-.||.+.-+|.+.|
T Consensus 6 aqlenevaslenenetlkkknlhkkdliaylekeianlrkki 47 (49)
T 3he5_A 6 AQLENEVASLENENETLKKKNLHKKDLIAYLEKEIANLRKKI 47 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHHHHHh
Confidence 345555555555666777778888899999998877777654
No 85
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=49.33 E-value=24 Score=23.63 Aligned_cols=28 Identities=32% Similarity=0.278 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhHHHHHH
Q psy14534 36 MKTLQAINEEILQRISHLETSSQTNVKT 63 (423)
Q Consensus 36 ~~~l~~~~~~~~~r~~~~e~~~~~l~~~ 63 (423)
|++|+..+|++..+...||.+-.+|.+-
T Consensus 2 MnQLEdKVEell~~~~~le~EV~Rl~~l 29 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNEIARNTKL 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 6777777777777888888777777643
No 86
>3ck6_A Putative membrane transport protein; APC91421.1, ZNTB, cytoplasmic domain, PSI-2, protein structure initiative; HET: MSE; 1.90A {Vibrio parahaemolyticus rimd 2210633} PDB: 3bhc_A*
Probab=49.14 E-value=44 Score=30.57 Aligned_cols=21 Identities=5% Similarity=0.170 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHhhhhhhhh
Q psy14534 36 MKTLQAINEEILQRISHLETS 56 (423)
Q Consensus 36 ~~~l~~~~~~~~~r~~~~e~~ 56 (423)
.+.+-...+.+.++|..+|.+
T Consensus 146 vd~y~~~l~~l~~~id~lE~~ 166 (252)
T 3ck6_A 146 NGKIDLYLDTIEETLNEFDVN 166 (252)
T ss_dssp HHHHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHcC
Confidence 344444567888888888876
No 87
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=49.14 E-value=39 Score=23.81 Aligned_cols=27 Identities=30% Similarity=0.394 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhHHHHH
Q psy14534 36 MKTLQAINEEILQRISHLETSSQTNVK 62 (423)
Q Consensus 36 ~~~l~~~~~~~~~r~~~~e~~~~~l~~ 62 (423)
.++|+..+.++.+||+-|+.+-.-|..
T Consensus 12 ~k~le~~naeLEervstLq~EN~mLRq 38 (42)
T 2oqq_A 12 VKDLENKNSELEERLSTLQNENQMLRH 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 344444555566666666666554443
No 88
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=48.50 E-value=1.9e+02 Score=27.77 Aligned_cols=32 Identities=13% Similarity=0.249 Sum_probs=14.6
Q ss_pred HHHHHHHhhhhhhhh-----hHHHHHHhhccccccch
Q psy14534 42 INEEILQRISHLETS-----SQTNVKTLFNITKQISG 73 (423)
Q Consensus 42 ~~~~~~~r~~~~e~~-----~~~l~~~~~n~s~q~~~ 73 (423)
..+.+.+++..+|.+ .+....++..+.+++..
T Consensus 172 ~l~~l~~~i~~lE~~l~~~~~~~~l~~l~~lrr~l~~ 208 (339)
T 4ev6_A 172 ILMNLEDELEELEDKLLAGYDREVMEKILGLRKTLVY 208 (339)
T ss_dssp HHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHH
Confidence 344555555555543 22333444444444433
No 89
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=47.93 E-value=19 Score=24.20 Aligned_cols=28 Identities=25% Similarity=0.343 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhHHHHH
Q psy14534 35 KMKTLQAINEEILQRISHLETSSQTNVK 62 (423)
Q Consensus 35 ~~~~l~~~~~~~~~r~~~~e~~~~~l~~ 62 (423)
.|++|+..+|++..+-..||.+-.+|++
T Consensus 2 RMnQLEdKVEeLl~~~~~Le~EV~RLk~ 29 (34)
T 3c3f_A 2 RMXQIEXKLEXILSXLYHXENEXARIXK 29 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 3667777777777777777777666654
No 90
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=46.99 E-value=27 Score=23.55 Aligned_cols=28 Identities=18% Similarity=0.194 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhHHHHHH
Q psy14534 36 MKTLQAINEEILQRISHLETSSQTNVKT 63 (423)
Q Consensus 36 ~~~l~~~~~~~~~r~~~~e~~~~~l~~~ 63 (423)
|++|+..+|++..+...||.+..+|++-
T Consensus 3 MnQledKvEel~~~~~~l~nEv~Rl~~l 30 (34)
T 2r2v_A 3 LKQVADKLEEVASKLYHNANELARVAKL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 6667777777777777777777777653
No 91
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=46.72 E-value=29 Score=22.69 Aligned_cols=26 Identities=23% Similarity=0.523 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhh
Q psy14534 32 INHKMKTLQAINEEILQRISHLETSS 57 (423)
Q Consensus 32 ~~~~~~~l~~~~~~~~~r~~~~e~~~ 57 (423)
|.+.+..|+.++.++.+|++.||.+-
T Consensus 4 lee~~r~l~~ivq~lq~r~drle~tv 29 (32)
T 2akf_A 4 LEEDVRNLNAIVQKLQERLDRLEETV 29 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556667777788888887653
No 92
>2olt_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: MSE; 2.00A {Shewanella oneidensis} PDB: 2iiu_A*
Probab=46.62 E-value=1.6e+02 Score=26.36 Aligned_cols=79 Identities=16% Similarity=0.158 Sum_probs=47.2
Q ss_pred hhhHHHHHhhHHHHHHHHHHHHHHHH----HHHHHHHHhhhhhhhhhHHHHHHhhc-ccccc-chhhhhhhhHHHHHHHH
Q psy14534 15 GKLFLKTKHHLEKEQHVINHKMKTLQ----AINEEILQRISHLETSSQTNVKTLFN-ITKQI-SGVEHLHSSMMELLESI 88 (423)
Q Consensus 15 ~~~~~~~~~~le~~~~~~~~~~~~l~----~~~~~~~~r~~~~e~~~~~l~~~~~n-~s~q~-~~~~k~~~s~~el~e~v 88 (423)
=.+|.++...+-..-..+.+-+..+- ...+.+.++|+.+|.+-..+..++.+ +.+-. .-+++ +-++.|..++
T Consensus 16 f~~l~~~a~~~~~~a~~L~~~~~~~~~~d~~~~~~~~~~i~~~E~~aD~l~~~I~~~L~~~~~~P~dr--edi~~L~~~l 93 (227)
T 2olt_A 16 IKPLQEHMDKVYDCASLLVPFFEATITGNWDDAVQIRKQISLAEKQGDSLKREIRLTLPSGLFMPVER--TDLLELLTQQ 93 (227)
T ss_dssp THHHHHHHHHHHHHHHTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCCSCSSCH--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCH--HHHHHHHHHH
Confidence 44566777766666666666555421 13456778999999998888888777 33222 13444 4455554444
Q ss_pred HHHHHHh
Q psy14534 89 ETIENKV 95 (423)
Q Consensus 89 e~~~~~~ 95 (423)
+.+-+.+
T Consensus 94 D~I~D~~ 100 (227)
T 2olt_A 94 DKIANKA 100 (227)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444333
No 93
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A
Probab=45.96 E-value=18 Score=32.36 Aligned_cols=65 Identities=14% Similarity=0.199 Sum_probs=32.1
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-----hhHHHHHHhhccccccchhhhhhhhHH
Q psy14534 18 FLKTKHHLEKEQHVINHKMKTLQAINEEILQRISHLET-----SSQTNVKTLFNITKQISGVEHLHSSMM 82 (423)
Q Consensus 18 ~~~~~~~le~~~~~~~~~~~~l~~~~~~~~~r~~~~e~-----~~~~l~~~~~n~s~q~~~~~k~~~s~~ 82 (423)
+++.+..|.++++.|+|+...|++.-..+...|+..-. .-+.+++.+....+++..+..+...+.
T Consensus 12 lr~~~~~L~~~~r~Ldr~~~kle~~ekk~~~~Ikka~k~g~~~~aki~Ak~lvr~rk~~~~l~~~~a~l~ 81 (179)
T 2gd5_A 12 VNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMN 81 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666666666665555443333333333221 123355555555555544444444443
No 94
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=45.27 E-value=27 Score=27.98 Aligned_cols=8 Identities=13% Similarity=0.181 Sum_probs=2.9
Q ss_pred hhhhhhhh
Q psy14534 49 RISHLETS 56 (423)
Q Consensus 49 r~~~~e~~ 56 (423)
.+..++.+
T Consensus 23 q~~~l~~~ 30 (107)
T 1fxk_A 23 QKQTVEMQ 30 (107)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 95
>3fhn_A Protein transport protein TIP20; TIP20P, vesicle tethering, endoplasmic reticulum, ER-golgi transport, membrane, phosphoprotein; 3.00A {Saccharomyces cerevisiae}
Probab=45.26 E-value=57 Score=35.62 Aligned_cols=107 Identities=15% Similarity=0.289 Sum_probs=58.0
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh-hHHHHHHhhccccccchhhhhhhhH--HHHHHHHHH----
Q psy14534 18 FLKTKHHLEKEQHVINHKMKTLQAINEEILQRISHLETS-SQTNVKTLFNITKQISGVEHLHSSM--MELLESIET---- 90 (423)
Q Consensus 18 ~~~~~~~le~~~~~~~~~~~~l~~~~~~~~~r~~~~e~~-~~~l~~~~~n~s~q~~~~~k~~~s~--~el~e~ve~---- 90 (423)
+..+|++++++...|+++++.++.- . ...+-+.+ ..-++..|......++.++.|.+.- +++|..++.
T Consensus 15 i~~~i~~~~~~r~~l~~~~~~~~~~--~---~~~~~~~~~~~~~~~~i~~~~~s~~~~~~l~~~yg~l~il~~l~~~~~~ 89 (706)
T 3fhn_A 15 INDRIKQVQNERNELASKLQNLKQS--L---ASNDTEVALSEVIAQDIIEVGASVEGLEQLRAKYGDLQILNKLEKVAVQ 89 (706)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--H---HHTCTTCCCCHHHHHHHHHSCSSHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc--c---cccchHHHHHHHHHHHHHhccccHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 3467777777777777777766321 1 22333333 3346777877777788888877654 445544443
Q ss_pred ---HHHHhhhcchhHHHHHHhhhhhhhhhh--hhhhhhhhhhhhhHHHHHHH
Q psy14534 91 ---IENKVDYNLPTIQREISKLEFGVAQIN--STLQVVNETRESDANYLKST 137 (423)
Q Consensus 91 ---~~~~~d~~ip~~~~EI~e~e~~l~q~t--s~l~~~~Ee~~n~s~~i~s~ 137 (423)
.+..++ ++.+.|..+.+.. +-....-++++++..+|++.
T Consensus 90 ~~~~~~~~~--------~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 133 (706)
T 3fhn_A 90 QTQMQAGVD--------KLDSFERQLDELAEQPPDQFTLDDVKALHSKLTSV 133 (706)
T ss_dssp HHHHHHHHH--------HHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH--------HHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHH
Confidence 333332 2233333333221 11244456677777777665
No 96
>3g67_A Methyl-accepting chemotaxis protein; four-helix bundle, signaling protein; 2.17A {Thermotoga maritima} PDB: 3g6b_A 3ur1_C
Probab=45.02 E-value=1.9e+02 Score=26.62 Aligned_cols=21 Identities=10% Similarity=0.120 Sum_probs=10.0
Q ss_pred hhhhhhhhhhHHHHHHHHhhh
Q psy14534 121 QVVNETRESDANYLKSTVSTL 141 (423)
Q Consensus 121 ~~~~Ee~~n~s~~i~s~~~si 141 (423)
.++-+|++.|+...+.-...|
T Consensus 115 aVVA~Evr~La~~t~~~~~~I 135 (213)
T 3g67_A 115 MIVANEVQNLSNETNEVTKQI 135 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444555555554444444433
No 97
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=44.92 E-value=46 Score=26.03 Aligned_cols=28 Identities=25% Similarity=0.167 Sum_probs=18.1
Q ss_pred hhhhhHHHHHHHHhhhHHHHHHHHHHHH
Q psy14534 126 TRESDANYLKSTVSTLATLQEKVEANNI 153 (423)
Q Consensus 126 e~~n~s~~i~s~~~sis~lqek~~~~~k 153 (423)
-++.++.++.+|-..|..|+|.+.+..|
T Consensus 19 ~l~~Lr~eL~~Ke~eI~~L~e~i~lk~k 46 (75)
T 3a7o_A 19 TLAILQKELKSKEQEIRRLKEVIALKNK 46 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4555566666666677777777766555
No 98
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=44.63 E-value=34 Score=26.81 Aligned_cols=14 Identities=7% Similarity=-0.073 Sum_probs=5.3
Q ss_pred hhhHHHHHHHHhhh
Q psy14534 128 ESDANYLKSTVSTL 141 (423)
Q Consensus 128 ~n~s~~i~s~~~si 141 (423)
+.+-..|..+-..|
T Consensus 43 ~eLEk~L~ekd~eI 56 (72)
T 3nmd_A 43 DELELELDQKDELI 56 (72)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 99
>3t97_C Nuclear pore glycoprotein P62; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=44.54 E-value=33 Score=26.16 Aligned_cols=41 Identities=15% Similarity=0.262 Sum_probs=21.1
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHH
Q psy14534 19 LKTKHHLEKEQHVINHKMKTLQAINEEILQRISHLETSSQT 59 (423)
Q Consensus 19 ~~~~~~le~~~~~~~~~~~~l~~~~~~~~~r~~~~e~~~~~ 59 (423)
...+...++.|..++++|+-++....+++.-|..+|.+...
T Consensus 18 ~~~v~~~e~~Q~~ldq~Ld~Ie~QQ~ELe~~L~~~E~~v~~ 58 (64)
T 3t97_C 18 HREVEKVKLDQKRLDQELDFILSQQKELEDLLSPLEESVKE 58 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHTTTTTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555555555555555555555555555555544433
No 100
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=43.87 E-value=1.5e+02 Score=31.35 Aligned_cols=13 Identities=31% Similarity=0.409 Sum_probs=5.3
Q ss_pred hhcchhHHHHHHh
Q psy14534 96 DYNLPTIQREISK 108 (423)
Q Consensus 96 d~~ip~~~~EI~e 108 (423)
|+.|.+..++|++
T Consensus 479 d~~l~~~~k~~~~ 491 (592)
T 1f5n_A 479 DQTLTEKEKEIEV 491 (592)
T ss_dssp CSSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444433
No 101
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=42.21 E-value=64 Score=23.34 Aligned_cols=52 Identities=15% Similarity=0.100 Sum_probs=24.6
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhccccc
Q psy14534 19 LKTKHHLEKEQHVINHKMKTLQAINEEILQRISHLETSSQTNVKTLFNITKQ 70 (423)
Q Consensus 19 ~~~~~~le~~~~~~~~~~~~l~~~~~~~~~r~~~~e~~~~~l~~~~~n~s~q 70 (423)
.+++.+++.....+......+...++....+++.+..++......|.....|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~q 55 (60)
T 3htk_A 4 ANTKKTLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQ 55 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555544444444444444444444444444444444444333
No 102
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=42.19 E-value=93 Score=24.84 Aligned_cols=42 Identities=12% Similarity=0.088 Sum_probs=28.6
Q ss_pred HhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhhHHHHHHH
Q psy14534 107 SKLEFGVAQINSTLQVVNETRESDANYLKSTVSTLATLQEKV 148 (423)
Q Consensus 107 ~e~e~~l~q~ts~l~~~~Ee~~n~s~~i~s~~~sis~lqek~ 148 (423)
.++|-+--|---+|++.++|+..+..++..+-..|+.||+++
T Consensus 36 ~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~l 77 (81)
T 3qh9_A 36 EELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQL 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 444444445555666667777777888888888887777765
No 103
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=42.14 E-value=54 Score=29.58 Aligned_cols=14 Identities=7% Similarity=-0.095 Sum_probs=0.0
Q ss_pred HhhhhhhhhhHHHH
Q psy14534 48 QRISHLETSSQTNV 61 (423)
Q Consensus 48 ~r~~~~e~~~~~l~ 61 (423)
++.+++=+....|+
T Consensus 26 k~~kk~~la~~al~ 39 (175)
T 3lay_A 26 KRNNKSAIALIALS 39 (175)
T ss_dssp --------------
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444333
No 104
>4g2k_A General control protein GCN4, envelope glycoprote chimera; GP2-GCN4 fusion, viral protein; 1.90A {Saccharomyces cerevisiae}
Probab=42.07 E-value=39 Score=29.00 Aligned_cols=60 Identities=23% Similarity=0.248 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhHHHHHHhhccccccchhh-hhhhhHHHHHHHHHHHHHHh
Q psy14534 36 MKTLQAINEEILQRISHLETSSQTNVKTLFNITKQISGVE-HLHSSMMELLESIETIENKV 95 (423)
Q Consensus 36 ~~~l~~~~~~~~~r~~~~e~~~~~l~~~~~n~s~q~~~~~-k~~~s~~el~e~ve~~~~~~ 95 (423)
|++++...|++.-.+=++|++.-+|.+.+-|++-.+..+- .+-.++.-|++++..+-..+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~L~~~l~~~aN~T~~aL~~L~~q~Tslr~~~ 76 (125)
T 4g2k_A 16 MKQIEDKIEEILSKIYHIENEIARIKKLIGNLVSRLRRLANQTAKSLELLLRVTTEERTFS 76 (125)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555566666677777777777777777776555332 23333334445554444443
No 105
>2gd5_A Charged multivesicular BODY protein 3; CHMP3, ESCRT-III, protein transport; 2.80A {Homo sapiens} PDB: 3frv_A
Probab=41.90 E-value=86 Score=27.82 Aligned_cols=28 Identities=7% Similarity=0.061 Sum_probs=20.9
Q ss_pred chhhHHHHHhhHHHHHHHHHHHHHHHHH
Q psy14534 14 NGKLFLKTKHHLEKEQHVINHKMKTLQA 41 (423)
Q Consensus 14 ~~~~~~~~~~~le~~~~~~~~~~~~l~~ 41 (423)
+.+.|+..+.+|++.+..+.++-+.++.
T Consensus 15 ~~~~L~~~~r~Ldr~~~kle~~ekk~~~ 42 (179)
T 2gd5_A 15 WSLKIRKEMRVVDRQIRDIQREEEKVKR 42 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888888888888777655544
No 106
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=41.54 E-value=43 Score=26.15 Aligned_cols=26 Identities=15% Similarity=0.362 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhHHH
Q psy14534 35 KMKTLQAINEEILQRISHLETSSQTN 60 (423)
Q Consensus 35 ~~~~l~~~~~~~~~r~~~~e~~~~~l 60 (423)
+|..++..+..+.+||+.+|.....-
T Consensus 8 kLq~~E~~N~~Le~~v~~le~~Le~s 33 (72)
T 3cve_A 8 KLQEVEIRNKDLEGQLSEMEQRLEKS 33 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 44455445555666666665554433
No 107
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=41.39 E-value=49 Score=31.49 Aligned_cols=75 Identities=13% Similarity=0.290 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHhhhhhhhhhHHHHHHhhccccccchhhhhhhhHHHHHHHHHHHHHHhhhcchhHHHHHHhhhh
Q psy14534 37 KTLQAINEEILQRISHLETSSQTNVKTLFNITKQISGVEHLHSSMMELLESIETIENKVDYNLPTIQREISKLEF 111 (423)
Q Consensus 37 ~~l~~~~~~~~~r~~~~e~~~~~l~~~~~n~s~q~~~~~k~~~s~~el~e~ve~~~~~~d~~ip~~~~EI~e~e~ 111 (423)
..|.+..+.+..++.-|++.-.-.+.+|.-+...|+.|+.....+++=|..||.-|--.+.-|-.|+.-|.-+++
T Consensus 152 ~~Lkk~~~~i~~~LelL~IRK~ma~sEI~EID~KI~~L~~mR~~vl~RLA~lEqdEl~LE~eL~~V~~Rief~qE 226 (242)
T 3uux_B 152 SALKSFSQTLVNSLEFLNIQKNSTLSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLLLEDNLKQIDDRLDFLEE 226 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 455556667777788888887777888888888888888888888877777777777776666666666655444
No 108
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=41.25 E-value=74 Score=25.31 Aligned_cols=40 Identities=13% Similarity=0.183 Sum_probs=21.4
Q ss_pred cchhhhhhhhHHHHHHHHHHHHHHhhhcchhHHHHHHhhhh
Q psy14534 71 ISGVEHLHSSMMELLESIETIENKVDYNLPTIQREISKLEF 111 (423)
Q Consensus 71 ~~~~~k~~~s~~el~e~ve~~~~~~d~~ip~~~~EI~e~e~ 111 (423)
+..+.+++..+-.|...+..++... ..+..+..||..++.
T Consensus 7 i~~f~~lq~~~~~l~~q~~~l~~~~-~e~~~~~~EL~~l~~ 46 (107)
T 1fxk_A 7 LAQFQQLQQQAQAISVQKQTVEMQI-NETQKALEELSRAAD 46 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCC
Confidence 3455555666666666666665555 333444455555543
No 109
>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens}
Probab=41.17 E-value=84 Score=29.27 Aligned_cols=67 Identities=15% Similarity=0.224 Sum_probs=43.3
Q ss_pred hhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh-----hHHHHHHhhccccccchhhhhhhhHH
Q psy14534 16 KLFLKTKHHLEKEQHVINHKMKTLQAINEEILQRISHLETS-----SQTNVKTLFNITKQISGVEHLHSSMM 82 (423)
Q Consensus 16 ~~~~~~~~~le~~~~~~~~~~~~l~~~~~~~~~r~~~~e~~-----~~~l~~~~~n~s~q~~~~~k~~~s~~ 82 (423)
-.+++--..|-++++.|+|+...|++.-..+...|+..-.. -+.+++.+..+-+++..+-.+.+++.
T Consensus 10 e~~r~~~r~Lr~~~R~LdR~~~kle~eEkk~~~~IKkaakkg~~~~arilAkelVR~Rk~~~rl~~~kaqL~ 81 (218)
T 3frt_A 10 ELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMN 81 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677778899999999999988877654444444433222 35566666666666665555555543
No 110
>1bf5_A Signal transducer and activator of transcription 1-alpha/beta; complex (SH2 domain/DNA), SH2 domain, transcription factor; HET: DNA PTR; 2.90A {Homo sapiens} SCOP: a.47.1.1 b.2.5.5 d.93.1.1
Probab=41.14 E-value=2.8e+02 Score=29.47 Aligned_cols=33 Identities=18% Similarity=0.172 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHH
Q psy14534 29 QHVINHKMKTLQAINEEILQRISHLETSSQTNV 61 (423)
Q Consensus 29 ~~~~~~~~~~l~~~~~~~~~r~~~~e~~~~~l~ 61 (423)
+.+++.++..|...++..++-|+.||..|....
T Consensus 4 ~~~i~~~~~~l~~~~q~~e~~~k~Le~~Qe~f~ 36 (575)
T 1bf5_A 4 QKELDSKVRNVKDKVMCIEHEIKSLEDLQDEYD 36 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555556666666666555443
No 111
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=40.17 E-value=1.4e+02 Score=30.88 Aligned_cols=14 Identities=14% Similarity=0.525 Sum_probs=7.8
Q ss_pred CCCCCccCCccccc
Q psy14534 369 THCASNYEGGWWFS 382 (423)
Q Consensus 369 ~nCA~~~~GGWWy~ 382 (423)
.+|....--|-+|.
T Consensus 405 ~~C~~sNLNG~Y~~ 418 (461)
T 3ghg_B 405 NRCHAANPNGRYYW 418 (461)
T ss_dssp SSBCSCBSSSCCCT
T ss_pred CCCCCCCCCCcccC
Confidence 46766554455553
No 112
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=39.78 E-value=1.2e+02 Score=24.73 Aligned_cols=75 Identities=9% Similarity=0.142 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhccccccchhhhhhhhHHHHHHHHHHHHHHhhhcchhHHHHHHhhhh
Q psy14534 32 INHKMKTLQAINEEILQRISHLETSSQTNVKTLFNITKQISGVEHLHSSMMELLESIETIENKVDYNLPTIQREISKLEF 111 (423)
Q Consensus 32 ~~~~~~~l~~~~~~~~~r~~~~e~~~~~l~~~~~n~s~q~~~~~k~~~s~~el~e~ve~~~~~~d~~ip~~~~EI~e~e~ 111 (423)
+++-.++|++..+.+.+.+.+|...-..|. |=|..-.+|.-+-..+|.+.+..|++..+..+|=++.=|+-+|+
T Consensus 11 lr~Fa~~L~~F~d~Lq~~~~~L~~~f~~L~------sWqDqkr~kFee~fe~l~s~l~~f~e~a~e~vp~L~~~i~vle~ 84 (94)
T 3fx7_A 11 VREFVGHLERFKELLREEVNSLSNHFHNLE------SWRDARRDKFSEVLDNLKSTFNEFDEAAQEQIAWLKERIRVLEE 84 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC------SCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccc------hHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHHHHHHHHhHH
Confidence 444456777777777777666655544441 34555566666777788888888888998999999988888776
Q ss_pred h
Q psy14534 112 G 112 (423)
Q Consensus 112 ~ 112 (423)
.
T Consensus 85 ~ 85 (94)
T 3fx7_A 85 D 85 (94)
T ss_dssp H
T ss_pred H
Confidence 4
No 113
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=39.72 E-value=78 Score=22.65 Aligned_cols=38 Identities=21% Similarity=0.344 Sum_probs=22.5
Q ss_pred HHHHHhhHHHHHHHHHHHHHHH----HHHHHHHHHhhhhhhh
Q psy14534 18 FLKTKHHLEKEQHVINHKMKTL----QAINEEILQRISHLET 55 (423)
Q Consensus 18 ~~~~~~~le~~~~~~~~~~~~l----~~~~~~~~~r~~~~e~ 55 (423)
+.+.+.+||.+...|.-+++.| ..-...+-.||..||.
T Consensus 3 lEekv~~Le~~ld~LqTr~ArLlae~~ssq~KlKqRit~lE~ 44 (46)
T 3swy_A 3 LEEKVEQLGSSLDTLQTRFARLLAEYNATQMKMKQRLSQLES 44 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566777777777765444444 3333356667776664
No 114
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=39.59 E-value=99 Score=25.75 Aligned_cols=62 Identities=8% Similarity=-0.030 Sum_probs=30.3
Q ss_pred hhhhhhhhhhhhhhhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy14534 111 FGVAQINSTLQVVNETRESDANYLKSTVSTLATLQEKVEANNIIMQALSDANYLKSTVSTLATL 174 (423)
Q Consensus 111 ~~l~q~ts~l~~~~Ee~~n~s~~i~s~~~sis~lqek~~~~~kv~~le~Q~~~I~~l~~~v~~~ 174 (423)
...+|+.++=+++-=++.-++-.+..+-+.+ .|-+++...+...++.+-..+..+-..+..+
T Consensus 16 VsnAQLDNEKsal~YqVdlLKD~LEe~eE~~--aql~Re~~eK~re~e~~Kr~~~~L~~~~~~l 77 (103)
T 4h22_A 16 VSNAQLDNEKTNFMYQVDTLKDMLLELEEQL--AESRRQYEEKNKEFEREKHAHSILQFQFAEV 77 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555666666666666 3444444444444444444444333333333
No 115
>2yny_A General control protein GCN4, putative inner MEMB protein; FGG domain, trimeric autotransporter adhesin, TAA, membrane chimera; 1.35A {Saccharomyces cerevisiae} PDB: 1w5i_A
Probab=39.49 E-value=84 Score=26.31 Aligned_cols=36 Identities=25% Similarity=0.464 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHhhhhhhhhhHHHHHHhhccccccc
Q psy14534 37 KTLQAINEEILQRISHLETSSQTNVKTLFNITKQIS 72 (423)
Q Consensus 37 ~~l~~~~~~~~~r~~~~e~~~~~l~~~~~n~s~q~~ 72 (423)
++++...|++.-+|-+||.+.--.-..++.++..++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~AVNGSQLy~~s~sVA 37 (106)
T 2yny_A 2 KQIEDKIEEILSKIYHIENEIARIKKLIYSLSQSVA 37 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhhhcccccccHHHHHHHHHHHH
Confidence 445555667777777777775555555555555554
No 116
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=39.41 E-value=65 Score=32.94 Aligned_cols=8 Identities=25% Similarity=0.588 Sum_probs=5.1
Q ss_pred ccccccch
Q psy14534 286 SEFWIGND 293 (423)
Q Consensus 286 gEfWLGLe 293 (423)
..|.+|-|
T Consensus 263 ~~F~Vg~E 270 (411)
T 3ghg_C 263 AMFKVGPE 270 (411)
T ss_dssp EEEEECCG
T ss_pred eeeecCCC
Confidence 35777766
No 117
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=39.38 E-value=1.5e+02 Score=30.94 Aligned_cols=35 Identities=11% Similarity=0.143 Sum_probs=29.1
Q ss_pred HHHHHhhhhhhhhhhhhhhhhhhhhhhhHHHHHHH
Q psy14534 103 QREISKLEFGVAQINSTLQVVNETRESDANYLKST 137 (423)
Q Consensus 103 ~~EI~e~e~~l~q~ts~l~~~~Ee~~n~s~~i~s~ 137 (423)
=.+|.+++...+++-.++..++.+.+.++++|..+
T Consensus 69 ~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~ 103 (501)
T 1wle_A 69 LPGIISTWQELRQLREQIRSLEEEKEAVTEAVRAL 103 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46888888888888888888888888888888763
No 118
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=39.19 E-value=10 Score=40.13 Aligned_cols=25 Identities=8% Similarity=0.045 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHH
Q psy14534 145 QEKVEANNIIMQALSDANYLKSTVS 169 (423)
Q Consensus 145 qek~~~~~kv~~le~Q~~~I~~l~~ 169 (423)
.+++....|.++|..|+..|+.=+.
T Consensus 504 ~eR~~~~ekn~~lq~qL~~L~~el~ 528 (575)
T 2i1j_A 504 ADRRTLAERNERLHNQLKALKQDLA 528 (575)
T ss_dssp GGCCCHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3444444444556666666654443
No 119
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=39.00 E-value=2.3e+02 Score=25.89 Aligned_cols=44 Identities=11% Similarity=0.189 Sum_probs=20.6
Q ss_pred HHHHHhhhcchhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhHHH
Q psy14534 90 TIENKVDYNLPTIQREISKLEFGVAQINSTLQVVNETRESDANY 133 (423)
Q Consensus 90 ~~~~~~d~~ip~~~~EI~e~e~~l~q~ts~l~~~~Ee~~n~s~~ 133 (423)
-||..+++.|....+-++.+...+.++..++...+........+
T Consensus 42 ELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e 85 (189)
T 2v71_A 42 ELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQ 85 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444445545555555544444444444444
No 120
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=38.92 E-value=54 Score=33.29 Aligned_cols=53 Identities=9% Similarity=0.051 Sum_probs=44.3
Q ss_pred hhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhccc
Q psy14534 16 KLFLKTKHHLEKEQHVINHKMKTLQAINEEILQRISHLETSSQTNVKTLFNIT 68 (423)
Q Consensus 16 ~~~~~~~~~le~~~~~~~~~~~~l~~~~~~~~~r~~~~e~~~~~l~~~~~n~s 68 (423)
.-|.+++.+|....+.+.++.+.++..++.+.+.+...|.+-+.|.+++..+.
T Consensus 6 ~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~ 58 (412)
T 3u06_A 6 AALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLR 58 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 46788888888888888888888888888888888888888888888876665
No 121
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Probab=38.66 E-value=3.2e+02 Score=27.42 Aligned_cols=37 Identities=8% Similarity=0.261 Sum_probs=24.8
Q ss_pred hhhhHHHHHHHHHHHHHHhhhcchhHHHHHHhhhhhhhh
Q psy14534 77 LHSSMMELLESIETIENKVDYNLPTIQREISKLEFGVAQ 115 (423)
Q Consensus 77 ~~~s~~el~e~ve~~~~~~d~~ip~~~~EI~e~e~~l~q 115 (423)
+...+-+|-+.+..+...+ .++.+..++.+++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~--~l~~~~~r~~el~~~~~~ 43 (365)
T 1gqe_A 7 VNNRIQDLTERSDVLRGYL--DYDAKKERLEEVNAELEQ 43 (365)
T ss_dssp HHHHHHHHHHHHHHHHHHT--THHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHhcC
Confidence 3445556666667777777 577778888887776644
No 122
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=38.51 E-value=1.1e+02 Score=24.11 Aligned_cols=44 Identities=9% Similarity=0.308 Sum_probs=27.4
Q ss_pred HHHHHhhHHHHHHHHHHHHHHH----HHHHHHHHHhhhhhhhhhHHHH
Q psy14534 18 FLKTKHHLEKEQHVINHKMKTL----QAINEEILQRISHLETSSQTNV 61 (423)
Q Consensus 18 ~~~~~~~le~~~~~~~~~~~~l----~~~~~~~~~r~~~~e~~~~~l~ 61 (423)
+.+.+.+||.+...|.-+++.| ..-...+-.||..||...+...
T Consensus 5 lEEKv~~LE~sld~LQTrfARLLaEy~ssQ~KLKqRit~LE~~~~~~~ 52 (74)
T 3swf_A 5 LEEKVTRMESSVDLLQTRFARILAEYESMQQKLKQRLTKVEKFLKPLI 52 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 4567777777777765554444 3333456777777777665544
No 123
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=38.28 E-value=1.8e+02 Score=30.15 Aligned_cols=31 Identities=19% Similarity=0.230 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHhhhcchhHHHHHHhhhhhh
Q psy14534 83 ELLESIETIENKVDYNLPTIQREISKLEFGV 113 (423)
Q Consensus 83 el~e~ve~~~~~~d~~ip~~~~EI~e~e~~l 113 (423)
+-+..+...|+.+..-..++++-|.-+.+.+
T Consensus 97 ~~~~q~~dndn~~~e~S~eLe~ri~yIK~kV 127 (491)
T 1m1j_A 97 PGLEGAQQLDENYGHVSTELRRRIVTLKQRV 127 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhccchhHHHHHHHHHHHHHHHHHHHH
Confidence 4455555566666444444444444444333
No 124
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=37.88 E-value=27 Score=23.36 Aligned_cols=27 Identities=33% Similarity=0.311 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhHHHHH
Q psy14534 36 MKTLQAINEEILQRISHLETSSQTNVK 62 (423)
Q Consensus 36 ~~~l~~~~~~~~~r~~~~e~~~~~l~~ 62 (423)
|++|+..+|++..+-..||.+-.+|.+
T Consensus 2 M~QLE~kVEeLl~~n~~Le~EV~RLk~ 28 (33)
T 3m48_A 2 MAQLEAKVEELLSKNWNLENEVARLKK 28 (33)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 566666777777777777777666654
No 125
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=37.76 E-value=1.7e+02 Score=24.14 Aligned_cols=17 Identities=18% Similarity=0.264 Sum_probs=8.2
Q ss_pred hhHHHHHHHHHHHHHHH
Q psy14534 23 HHLEKEQHVINHKMKTL 39 (423)
Q Consensus 23 ~~le~~~~~~~~~~~~l 39 (423)
+++|-+++.+--.+.-|
T Consensus 2 ~~~~~~~~~~~~~~~~~ 18 (114)
T 2xzr_A 2 KQIEDKIEEILSKIYHI 18 (114)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHh
Confidence 34555555544444333
No 126
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=37.49 E-value=1.2e+02 Score=26.61 Aligned_cols=28 Identities=14% Similarity=0.114 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHhhhcchhHHHHHHhhhh
Q psy14534 84 LLESIETIENKVDYNLPTIQREISKLEF 111 (423)
Q Consensus 84 l~e~ve~~~~~~d~~ip~~~~EI~e~e~ 111 (423)
+-+.++.+-..+.+....++.-|+.++.
T Consensus 47 ~~~~i~~l~~~i~~~~~~~~~~lk~l~~ 74 (196)
T 1fio_A 47 LRHSLDNFVAQATDLQFKLKNEIKSAQR 74 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444444444444443
No 127
>4g2k_A General control protein GCN4, envelope glycoprote chimera; GP2-GCN4 fusion, viral protein; 1.90A {Saccharomyces cerevisiae}
Probab=36.85 E-value=1.1e+02 Score=26.11 Aligned_cols=40 Identities=25% Similarity=0.405 Sum_probs=21.5
Q ss_pred hhhHHHHHHHHHHHHHHhhhcchhHHHHHHhhhhhhhhhhhhhh
Q psy14534 78 HSSMMELLESIETIENKVDYNLPTIQREISKLEFGVAQINSTLQ 121 (423)
Q Consensus 78 ~~s~~el~e~ve~~~~~~d~~ip~~~~EI~e~e~~l~q~ts~l~ 121 (423)
.|+|-+|=++||.+=.++ --+.+||+.+..-++-+.+.|.
T Consensus 13 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ig~L~~~l~ 52 (125)
T 4g2k_A 13 QGNMKQIEDKIEEILSKI----YHIENEIARIKKLIGNLVSRLR 52 (125)
T ss_dssp ---CHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHH----HhhhHHHHHHHHHHHHHHHHHH
Confidence 456656555555554444 2346777777766666655553
No 128
>2yo3_A General control protein GCN4, putative inner MEMB protein, general control protein...; HANS motif, YADA-like head, ylhead; 2.00A {Saccharomyces cerevisiae}
Probab=36.49 E-value=53 Score=31.72 Aligned_cols=47 Identities=23% Similarity=0.265 Sum_probs=35.6
Q ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHH
Q psy14534 17 LFLKTKHHLEKEQHVINHKMKTLQAINEEILQRISHLETSSQTNVKT 63 (423)
Q Consensus 17 ~~~~~~~~le~~~~~~~~~~~~l~~~~~~~~~r~~~~e~~~~~l~~~ 63 (423)
+...++.+|......++.++..+++..|++...|-+||.+..++++.
T Consensus 213 yTd~k~~~l~n~I~~V~n~~~q~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (268)
T 2yo3_A 213 YTDQKMGEMNSKIKGVENKMKQIEDKIEEILSKIYHIENEIARIKKL 259 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44556777888888888888888888888888888888877776543
No 129
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=36.47 E-value=2.5e+02 Score=26.98 Aligned_cols=34 Identities=12% Similarity=0.124 Sum_probs=16.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q psy14534 23 HHLEKEQHVINHKMKTLQAINEEILQRISHLETS 56 (423)
Q Consensus 23 ~~le~~~~~~~~~~~~l~~~~~~~~~r~~~~e~~ 56 (423)
.+++.....+..++.++.+....+.+.+..|+..
T Consensus 95 ~~~e~~~~~l~~~~~~l~~~~~~L~~~~~~l~~~ 128 (357)
T 3rrk_A 95 EEAEAVLRPVASRAEVLGKERAALEEEIQTIELF 128 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3344444444444555544445555555555555
No 130
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=36.36 E-value=34 Score=23.01 Aligned_cols=28 Identities=25% Similarity=0.241 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhHHHHHH
Q psy14534 36 MKTLQAINEEILQRISHLETSSQTNVKT 63 (423)
Q Consensus 36 ~~~l~~~~~~~~~r~~~~e~~~~~l~~~ 63 (423)
|++|+..+|++..+=..||.+-.+|++.
T Consensus 3 MnQLEdkVEeLl~~~~~Le~eV~RL~~l 30 (34)
T 2hy6_A 3 VKQLADAVEELASANYHLANAVARLAKA 30 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 5666666666766667777776666653
No 131
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=36.32 E-value=1.8e+02 Score=23.91 Aligned_cols=17 Identities=18% Similarity=0.106 Sum_probs=9.2
Q ss_pred hhhhhhhhhhhhhHHHH
Q psy14534 118 STLQVVNETRESDANYL 134 (423)
Q Consensus 118 s~l~~~~Ee~~n~s~~i 134 (423)
+..+.+.-|+.+++.++
T Consensus 47 ~~~~~ie~ElEeLTasL 63 (97)
T 2eqb_B 47 EEADKLNKEVEDLTASL 63 (97)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455555666665554
No 132
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=36.23 E-value=58 Score=26.99 Aligned_cols=77 Identities=13% Similarity=0.175 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHH-HHhhc-cccccchhhhhhhhHHHHHHHHHHHHHHhhhcchhHHHHHH
Q psy14534 30 HVINHKMKTLQAINEEILQRISHLETSSQTNV-KTLFN-ITKQISGVEHLHSSMMELLESIETIENKVDYNLPTIQREIS 107 (423)
Q Consensus 30 ~~~~~~~~~l~~~~~~~~~r~~~~e~~~~~l~-~~~~n-~s~q~~~~~k~~~s~~el~e~ve~~~~~~d~~ip~~~~EI~ 107 (423)
..+.+++++|+.-..++.+++..||.++.... .--|| ....| ||=+++=.-......++. +-.++.||.
T Consensus 15 ~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKV-----lH~~~NPa~~a~~~~~~~----~e~Lq~E~e 85 (100)
T 1go4_E 15 DTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKV-----LHMSLNPTSVARQRLRED----HSQLQAECE 85 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEE-----EEESSCHHHHHHHHHHHH----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCee-----eeecCChHHHHHHHHHHH----HHHHHHHHH
Confidence 34455566666666677777777777654421 23345 34566 666664332222222222 233455555
Q ss_pred hhhhhhhh
Q psy14534 108 KLEFGVAQ 115 (423)
Q Consensus 108 e~e~~l~q 115 (423)
++...++.
T Consensus 86 rLr~~v~~ 93 (100)
T 1go4_E 86 RLRGLLRA 93 (100)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHH
Confidence 55554443
No 133
>3euh_A Protein KICB, chromosome partition protein MUKF; chromosome condensation, condensin, non-SMC subunit, kleisin, calcium, cell cycle, cell division; 2.90A {Escherichia coli} PDB: 3rpu_A
Probab=36.04 E-value=1.7e+02 Score=29.94 Aligned_cols=64 Identities=23% Similarity=0.267 Sum_probs=45.5
Q ss_pred hhhhhHHHHHHHHHHHHHHhhhcchhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhhHHHHHHH
Q psy14534 76 HLHSSMMELLESIETIENKVDYNLPTIQREISKLEFGVAQINSTLQVVNETRESDANYLKSTVSTLATLQEKV 148 (423)
Q Consensus 76 k~~~s~~el~e~ve~~~~~~d~~ip~~~~EI~e~e~~l~q~ts~l~~~~Ee~~n~s~~i~s~~~sis~lqek~ 148 (423)
-|+=|+-|||+.|..-++-+|.+--.+|.||.++=- +--.+.|.+.-.-+...+.++..||+-+
T Consensus 159 ~LkySVaeifd~Idl~QR~mDeQQ~~vk~eIA~LL~---------~dW~~AI~~Ce~LL~Ets~tLRELqdtL 222 (440)
T 3euh_A 159 PLKYSVAEIFDSIDLTQRLMDEQQQQVKDDIAQLLN---------KDWRAAISSCELLLSETSGTLRELQDTL 222 (440)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHGGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCcHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 356788899999999999999999999999987521 2334555555555556666665555444
No 134
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=35.83 E-value=2.4e+02 Score=27.36 Aligned_cols=14 Identities=36% Similarity=0.318 Sum_probs=7.0
Q ss_pred HHHHHHhhhhhhhh
Q psy14534 43 NEEILQRISHLETS 56 (423)
Q Consensus 43 ~~~~~~r~~~~e~~ 56 (423)
.+.+.+++..+|.+
T Consensus 197 l~~l~~~id~lE~~ 210 (363)
T 2iub_A 197 LEKIDDEIDVLEEE 210 (363)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34455555555543
No 135
>2lw9_A Unconventionnal myosin-X; MYO10 anti-CC, motor protein; NMR {Homo sapiens}
Probab=35.67 E-value=38 Score=24.65 Aligned_cols=37 Identities=27% Similarity=0.300 Sum_probs=22.7
Q ss_pred HHHHhhHHHHHHHHHHHH---------HHHHHHHHHHHHhhhhhhh
Q psy14534 19 LKTKHHLEKEQHVINHKM---------KTLQAINEEILQRISHLET 55 (423)
Q Consensus 19 ~~~~~~le~~~~~~~~~~---------~~l~~~~~~~~~r~~~~e~ 55 (423)
-+.|-+||+.++.|.++. ++++.....+|.-|+.||.
T Consensus 5 ~EEILRLErEIE~Lqrqke~~~~~L~e~s~~eL~~~RD~El~RLe~ 50 (51)
T 2lw9_A 5 VEEILRLEKEIEDLQRMKEQQELSLTEASLQKLQERRDQELRRLEE 50 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHSCCCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhc
Confidence 367889999998887764 2233333445555555553
No 136
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=35.64 E-value=49 Score=30.40 Aligned_cols=21 Identities=14% Similarity=0.052 Sum_probs=8.1
Q ss_pred HhhhcchhHHHHHHhhhhhhh
Q psy14534 94 KVDYNLPTIQREISKLEFGVA 114 (423)
Q Consensus 94 ~~d~~ip~~~~EI~e~e~~l~ 114 (423)
+.|..|..+..|+.-+-..+.
T Consensus 17 ~ad~LV~~L~~En~~L~~ql~ 37 (190)
T 4emc_A 17 SADLLVANLVNENFVLSEKLD 37 (190)
T ss_dssp ---CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444333
No 137
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=35.60 E-value=1.7e+02 Score=23.43 Aligned_cols=10 Identities=30% Similarity=0.514 Sum_probs=3.6
Q ss_pred hhHHHHHHHH
Q psy14534 23 HHLEKEQHVI 32 (423)
Q Consensus 23 ~~le~~~~~~ 32 (423)
.++......|
T Consensus 13 ~~~~~~l~~L 22 (112)
T 1l8d_A 13 TTIEEERNEI 22 (112)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 138
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=35.16 E-value=53 Score=21.93 Aligned_cols=27 Identities=22% Similarity=0.160 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhHHHHH
Q psy14534 36 MKTLQAINEEILQRISHLETSSQTNVK 62 (423)
Q Consensus 36 ~~~l~~~~~~~~~r~~~~e~~~~~l~~ 62 (423)
|++|+..+|++..+=..||.+-.+|++
T Consensus 2 MnQLEdKvEeLl~~~~~Le~EV~RLk~ 28 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENXLARIKX 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 566666666666666777777666654
No 139
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=34.94 E-value=2e+02 Score=23.98 Aligned_cols=36 Identities=11% Similarity=0.205 Sum_probs=16.7
Q ss_pred HHHhhhcchhHHHHHHhhhhhhhhhhhhhhhhhhhh
Q psy14534 92 ENKVDYNLPTIQREISKLEFGVAQINSTLQVVNETR 127 (423)
Q Consensus 92 ~~~~d~~ip~~~~EI~e~e~~l~q~ts~l~~~~Ee~ 127 (423)
...|...|.++|+.|.....+-+++..++...+..+
T Consensus 15 ~~~ye~~I~~LR~qid~~~~e~a~l~leldn~~~~~ 50 (119)
T 3ol1_A 15 GDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDI 50 (119)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555554444444444444333333
No 140
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=34.88 E-value=69 Score=32.87 Aligned_cols=29 Identities=7% Similarity=-0.099 Sum_probs=16.8
Q ss_pred HHHHhhhhhhhhhHHHHHHhhccccccch
Q psy14534 45 EILQRISHLETSSQTNVKTLFNITKQISG 73 (423)
Q Consensus 45 ~~~~r~~~~e~~~~~l~~~~~n~s~q~~~ 73 (423)
.++++-|.+..+...|..+..-+|++|..
T Consensus 35 ~l~~~~r~~~~~~~~l~~~~n~~sk~i~~ 63 (455)
T 2dq0_A 35 KLDTEWRTKLKEINRLRHERNKIAVEIGK 63 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566666666666555556666653
No 141
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=34.85 E-value=45 Score=23.48 Aligned_cols=31 Identities=16% Similarity=0.079 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhHHHHHHhh
Q psy14534 35 KMKTLQAINEEILQRISHLETSSQTNVKTLF 65 (423)
Q Consensus 35 ~~~~l~~~~~~~~~r~~~~e~~~~~l~~~~~ 65 (423)
+|.+|+.....+..|...||....+|+++++
T Consensus 4 Yl~eLE~r~k~le~~naeLEervstLq~EN~ 34 (42)
T 2oqq_A 4 YLSELENRVKDLENKNSELEERLSTLQNENQ 34 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 4666666666666666666666666666654
No 142
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=34.73 E-value=33 Score=23.10 Aligned_cols=28 Identities=29% Similarity=0.304 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhHHHHH
Q psy14534 35 KMKTLQAINEEILQRISHLETSSQTNVK 62 (423)
Q Consensus 35 ~~~~l~~~~~~~~~r~~~~e~~~~~l~~ 62 (423)
.|++|+..+|++..+=..||.+..+|++
T Consensus 2 RMnQLEdKvEeLl~~~~~L~~EV~RLk~ 29 (34)
T 2bni_A 2 RMKQIEDKLEEILSKGHHICNELARIKK 29 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 3566666666666666666666666654
No 143
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=34.30 E-value=1.2e+02 Score=26.89 Aligned_cols=28 Identities=25% Similarity=0.221 Sum_probs=10.6
Q ss_pred HHHHhhhhhhhhhhhhhhhhhhhhhhhH
Q psy14534 104 REISKLEFGVAQINSTLQVVNETRESDA 131 (423)
Q Consensus 104 ~EI~e~e~~l~q~ts~l~~~~Ee~~n~s 131 (423)
.+|+.++++++-.+..+..++.|+-.+.
T Consensus 82 ~ki~dLeeel~eK~K~~e~l~DEl~aLq 109 (152)
T 3a7p_A 82 QEIRRLKEVIALKNKNTERLNAALISGT 109 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333
No 144
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=34.26 E-value=1.8e+02 Score=23.20 Aligned_cols=23 Identities=13% Similarity=0.348 Sum_probs=10.7
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHh
Q psy14534 73 GVEHLHSSMMELLESIETIENKV 95 (423)
Q Consensus 73 ~~~k~~~s~~el~e~ve~~~~~~ 95 (423)
-|++|...+-+.++.|..++-.+
T Consensus 7 lleqLE~KIq~avdtI~lLqmEi 29 (81)
T 2jee_A 7 VFEKLEAKVQQAIDTITLLQMEI 29 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444
No 145
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=34.18 E-value=93 Score=31.49 Aligned_cols=29 Identities=10% Similarity=0.146 Sum_probs=19.1
Q ss_pred HHHHhhhhhhhhhHHHHHHhhccccccch
Q psy14534 45 EILQRISHLETSSQTNVKTLFNITKQISG 73 (423)
Q Consensus 45 ~~~~r~~~~e~~~~~l~~~~~n~s~q~~~ 73 (423)
.++++-|.+..+...|..+..-+|++|..
T Consensus 32 ~~~~~~r~~~~~~~~l~~~~n~~sk~i~~ 60 (421)
T 1ses_A 32 ALDREVQELKKRLQEVQTERNQVAKRVPK 60 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666666666666666666667777754
No 146
>1t98_A KICB protein, chromosome partition protein MUKF; winged helix, helix-turn helix, domain swapped, condensin; 2.90A {Escherichia coli} SCOP: a.4.5.65 a.47.6.1
Probab=34.04 E-value=1.1e+02 Score=29.30 Aligned_cols=34 Identities=24% Similarity=0.421 Sum_probs=30.3
Q ss_pred hhhhhHHHHHHHHHHHHHHhhhcchhHHHHHHhh
Q psy14534 76 HLHSSMMELLESIETIENKVDYNLPTIQREISKL 109 (423)
Q Consensus 76 k~~~s~~el~e~ve~~~~~~d~~ip~~~~EI~e~ 109 (423)
-|+=|+-|||+++.--++.+|.+=-++|.||+.+
T Consensus 159 pLkySVaeifd~IDl~QR~mDeQQ~~Vk~~IA~L 192 (287)
T 1t98_A 159 PLKYSVAEIFDSIDLTQRLMDEQQQQVKDDIAQL 192 (287)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred heeeeHHHHHhhhhHHHHhhHHHHHHHHHHHHHH
Confidence 4677888999999999999999999999998876
No 147
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=33.85 E-value=90 Score=32.49 Aligned_cols=34 Identities=15% Similarity=-0.026 Sum_probs=23.5
Q ss_pred HHHHHhhhhhhhhhhhhhhhhhhhhhhhHHHHHH
Q psy14534 103 QREISKLEFGVAQINSTLQVVNETRESDANYLKS 136 (423)
Q Consensus 103 ~~EI~e~e~~l~q~ts~l~~~~Ee~~n~s~~i~s 136 (423)
-.+|.+++..-+++-.++..++.+.+.++++|..
T Consensus 32 ~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~ 65 (485)
T 3qne_A 32 VDEIIAEYKEWVKLRFDLDEHNKKLNSVQKEIGK 65 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667777777777777777777777777654
No 148
>2iaz_A Hypothetical protein SP1372; structural genomics, PSI-2, protei structure initiative; 2.40A {Streptococcus pneumoniae} SCOP: a.281.1.2
Probab=33.26 E-value=1.9e+02 Score=23.25 Aligned_cols=91 Identities=12% Similarity=0.192 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHhhhcchhHHH-----HHHhhhhhhhhhhhhhhhhhhhhhhhHHHH----HHHHhhhHHHHHHHHHH
Q psy14534 81 MMELLESIETIENKVDYNLPTIQR-----EISKLEFGVAQINSTLQVVNETRESDANYL----KSTVSTLATLQEKVEAN 151 (423)
Q Consensus 81 ~~el~e~ve~~~~~~d~~ip~~~~-----EI~e~e~~l~q~ts~l~~~~Ee~~n~s~~i----~s~~~sis~lqek~~~~ 151 (423)
|+.|++....|...+ ..-|+++. +--+...++.+.-.+.+.++.++.+....= ......+..++++++.+
T Consensus 2 m~~I~d~A~eL~~~I-~~s~ey~~~~~a~~~i~~d~ea~~l~~~f~~~q~~~~~~q~~G~~~~~e~~~~~~~l~~~i~~~ 80 (113)
T 2iaz_A 2 MSNIYDSANELSRGL-RGLPEYKAVKAAKDAIAADAEASKIFTDYLAFQEEIQKLAQTGQMPDASFQAKMEGFGKQIQGN 80 (113)
T ss_dssp HHHHHHHHHHHHHHH-HTSHHHHHHHHHHHHHHHCHHHHHHHHHHHHHGGGTTTTCC----CCHHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHH-HcCHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhCC
Confidence 456666666666666 44454421 111223333344444455555544332111 22344555667777777
Q ss_pred HHHHHHHhhHHHHHHHHHHHH
Q psy14534 152 NIIMQALSDANYLKSTVSTLA 172 (423)
Q Consensus 152 ~kv~~le~Q~~~I~~l~~~v~ 172 (423)
..|....+....+..+++.|.
T Consensus 81 p~v~~y~~Ae~~l~~ll~~I~ 101 (113)
T 2iaz_A 81 SLLSEFFTKQQQLAIYLSDIE 101 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 776655555555555554443
No 149
>3rj1_A Mediator of RNA polymerase II transcription subun; RNA polymeras II, POL II, head module, head, regulator, helical bundle; 4.30A {Saccharomyces cerevisiae}
Probab=33.09 E-value=13 Score=32.40 Aligned_cols=70 Identities=14% Similarity=0.188 Sum_probs=33.9
Q ss_pred HHHHhhhhhhhhhHHHHHHhhccccccchhhhhhhh---H-HHHHHHHHHHHHHhhhcchhHHHHHHhhhhhhh
Q psy14534 45 EILQRISHLETSSQTNVKTLFNITKQISGVEHLHSS---M-MELLESIETIENKVDYNLPTIQREISKLEFGVA 114 (423)
Q Consensus 45 ~~~~r~~~~e~~~~~l~~~~~n~s~q~~~~~k~~~s---~-~el~e~ve~~~~~~d~~ip~~~~EI~e~e~~l~ 114 (423)
-+.|||++|..--..+..-+.++|.=+-++-.+... . -+.=+.+..|=...+.---.+|+||+-++++++
T Consensus 21 ~IqERL~sL~~ID~~ivsLL~~aS~~~~tls~~k~g~~~~K~qF~~~t~~fy~~L~~v~v~LRkEIk~LDEniG 94 (131)
T 3rj1_A 21 YIQERLKSLNDIETQLCSMLQEASQVTFIFGELKRGNESVKPQFENHVKQFYERLDKSTTQLRKEIQLLDENVG 94 (131)
T ss_dssp CHHHHTTTTTTTTTTTHHHHSTTTHHHHHHHHSCCSTTTTHHHHHHHHHHHHGGGTTTTTTTTTTTSSTTTCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 478888888766666666555555444333221111 0 011111111111111122235889998888876
No 150
>2d4y_A HAP1, flagellar HOOK-associated protein 1; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 2.10A {Salmonella typhimurium}
Probab=32.45 E-value=3.5e+02 Score=27.17 Aligned_cols=17 Identities=0% Similarity=-0.017 Sum_probs=8.1
Q ss_pred hhhHHHHHhhHHHHHHH
Q psy14534 15 GKLFLKTKHHLEKEQHV 31 (423)
Q Consensus 15 ~~~~~~~~~~le~~~~~ 31 (423)
..|+..|+..-......
T Consensus 4 D~fl~~q~r~~~s~~~~ 20 (463)
T 2d4y_A 4 DAFITNQLRGAQNQSSG 20 (463)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhHH
Confidence 34555555544444333
No 151
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=32.39 E-value=1.5e+02 Score=29.45 Aligned_cols=81 Identities=16% Similarity=0.221 Sum_probs=47.8
Q ss_pred hhhhhhhhhhhhhhhhHHHHHHHHhhhHHHHHHHHHHHHH------HHHHhhHHHHHHHHHHHHHH---HHHHHHhH-HH
Q psy14534 115 QINSTLQVVNETRESDANYLKSTVSTLATLQEKVEANNII------MQALSDANYLKSTVSTLATL---QEKVEANN-II 184 (423)
Q Consensus 115 q~ts~l~~~~Ee~~n~s~~i~s~~~sis~lqek~~~~~kv------~~le~Q~~~I~~l~~~v~~~---~~ql~~q~-~l 184 (423)
.+-+.|+.+++++..+...+.++-..|..|+..++-.+.- ..+..+...+.+.+..|..+ ...|..|. .|
T Consensus 306 ~lq~~L~~~~~~l~~~~~~~~~k~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~q~~~~ 385 (406)
T 4dyl_A 306 SVQHTLTSVTDELAVATEMVFRRQEMVTQLQQELRNEEENTHPRERVQLLGKRQVLQEALQGLQVALCSQAKLQAQQELL 385 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchHHHHHhHHhhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 6667778888899999999888888886666666533210 02344555555555444332 33344443 55
Q ss_pred HHHHhccCCCC
Q psy14534 185 MQALRNGRSEG 195 (423)
Q Consensus 185 ~~kl~~~~~~~ 195 (423)
..+|...+..+
T Consensus 386 ~~~~~~~~~~~ 396 (406)
T 4dyl_A 386 QTKLEHLGPGE 396 (406)
T ss_dssp HHHHHTTTTSC
T ss_pred HHHHHhcCCCC
Confidence 66665554443
No 152
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=32.09 E-value=57 Score=27.84 Aligned_cols=22 Identities=14% Similarity=0.350 Sum_probs=9.2
Q ss_pred chhHHHHHHhhhhhhhhhhhhh
Q psy14534 99 LPTIQREISKLEFGVAQINSTL 120 (423)
Q Consensus 99 ip~~~~EI~e~e~~l~q~ts~l 120 (423)
+.+++.||+.+...|....+++
T Consensus 73 vqeLqgEI~~Lnq~Lq~a~ae~ 94 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQDASAEV 94 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444443333333
No 153
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=31.75 E-value=1.4e+02 Score=24.75 Aligned_cols=42 Identities=17% Similarity=0.163 Sum_probs=24.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhh
Q psy14534 24 HLEKEQHVINHKMKTLQAINEEILQRISHLETSSQTNVKTLF 65 (423)
Q Consensus 24 ~le~~~~~~~~~~~~l~~~~~~~~~r~~~~e~~~~~l~~~~~ 65 (423)
+||+..+.+.+.-+.|+.....-.-||+.||.+..+|..++.
T Consensus 41 ~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq 82 (104)
T 3s9g_A 41 ELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENL 82 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHH
Confidence 466666666555555555444555566666666666665543
No 154
>1y1u_A Signal transducer and activator of transcription; STAT, DNA-binding, SH2 domain, transcription REGU signaling protein; 3.21A {Mus musculus}
Probab=31.19 E-value=4e+02 Score=28.36 Aligned_cols=25 Identities=12% Similarity=0.361 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhHH
Q psy14534 35 KMKTLQAINEEILQRISHLETSSQT 59 (423)
Q Consensus 35 ~~~~l~~~~~~~~~r~~~~e~~~~~ 59 (423)
.+..|....+..++-++.||-.|..
T Consensus 20 ~v~~l~~~~q~~e~~~k~Le~~Qe~ 44 (585)
T 1y1u_A 20 RFEELRLITQDTENELKKLQQTQEY 44 (585)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334433344444444444444443
No 155
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=30.98 E-value=48 Score=32.79 Aligned_cols=8 Identities=13% Similarity=0.327 Sum_probs=5.3
Q ss_pred ccccccch
Q psy14534 286 SEFWIGND 293 (423)
Q Consensus 286 gEfWLGLe 293 (423)
..|.||-|
T Consensus 183 ~~F~V~~E 190 (323)
T 1lwu_C 183 GHFKLTPE 190 (323)
T ss_dssp EEEEECCG
T ss_pred cccccCCc
Confidence 46777765
No 156
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=30.87 E-value=1.1e+02 Score=24.17 Aligned_cols=24 Identities=17% Similarity=0.176 Sum_probs=15.5
Q ss_pred HHHHHHhhhhhhhhhHHHHHHhhc
Q psy14534 43 NEEILQRISHLETSSQTNVKTLFN 66 (423)
Q Consensus 43 ~~~~~~r~~~~e~~~~~l~~~~~n 66 (423)
.+.+..+|..||.++..|...+.+
T Consensus 24 le~le~~Ie~LE~~i~~le~~lad 47 (89)
T 2lw1_A 24 LEQLPQLLEDLEAKLEALQTQVAD 47 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC
Confidence 345666666677776677666655
No 157
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=30.68 E-value=52 Score=22.12 Aligned_cols=26 Identities=27% Similarity=0.259 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhHHHH
Q psy14534 36 MKTLQAINEEILQRISHLETSSQTNV 61 (423)
Q Consensus 36 ~~~l~~~~~~~~~r~~~~e~~~~~l~ 61 (423)
|++|+..+|++..+=..||.+-.+|.
T Consensus 3 MnQLE~kVEeLl~~n~~Le~eV~rLk 28 (34)
T 2oxj_A 3 MXQLEXKVXELLXKNXHLEXEVXRLK 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 44444444444444444554444444
No 158
>1j8b_A YBAB; hypothetical protein, structural genomics, structure function project, S2F, unknown function; HET: MSE; 1.75A {Haemophilus influenzae RD} SCOP: d.222.1.1 PDB: 1pug_A
Probab=30.67 E-value=21 Score=29.89 Aligned_cols=81 Identities=16% Similarity=0.229 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhH---HHHHHhhccccccchhhhhhhhHHHHHHHHHHHHHHhhhcchhHHHHHH
Q psy14534 31 VINHKMKTLQAINEEILQRISHLETSSQ---TNVKTLFNITKQISGVEHLHSSMMELLESIETIENKVDYNLPTIQREIS 107 (423)
Q Consensus 31 ~~~~~~~~l~~~~~~~~~r~~~~e~~~~---~l~~~~~n~s~q~~~~~k~~~s~~el~e~ve~~~~~~d~~ip~~~~EI~ 107 (423)
.+.++++++|+.++.+.++|...+.+-. -+.+-..|-..+|.++ ++.-+.++ +++|.||+-+ +--++.-++
T Consensus 12 ~mmkqaq~mQ~~m~~~QeeL~~~~v~g~sggG~V~Vt~~G~~ev~~i-~Idp~~~~--~d~E~LedlI---~aA~ndA~~ 85 (112)
T 1j8b_A 12 GLMKQAQQMQEKMQKMQEEIAQLEVTGESGAGLVKITINGAHNCRRI-DIDPSLME--DDKEMLEDLI---AAAFNDAVR 85 (112)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTSEEEEEEGGGTEEEEEETTCCEEEE-EECGGGGG--SCHHHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccEEEEEECCCEEEEEEecCceEEEE-EECHHHHh--CCHHHHHHHH---HHHHHHHHH
Confidence 3566777788888888888888877733 3444555655666544 25666666 7777777766 444455555
Q ss_pred hhhhhhhhhh
Q psy14534 108 KLEFGVAQIN 117 (423)
Q Consensus 108 e~e~~l~q~t 117 (423)
+.++..++..
T Consensus 86 ka~~~~~e~m 95 (112)
T 1j8b_A 86 RAEELQKEKM 95 (112)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555444333
No 159
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=30.56 E-value=75 Score=24.80 Aligned_cols=28 Identities=7% Similarity=0.073 Sum_probs=16.9
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q psy14534 18 FLKTKHHLEKEQHVINHKMKTLQAINEE 45 (423)
Q Consensus 18 ~~~~~~~le~~~~~~~~~~~~l~~~~~~ 45 (423)
+.++|..+|.....|.+++..++..+++
T Consensus 5 ~~~kLq~~E~~N~~Le~~v~~le~~Le~ 32 (72)
T 3cve_A 5 SHMKLQEVEIRNKDLEGQLSEMEQRLEK 32 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3456666666666666666666555543
No 160
>1qu7_A Methyl-accepting chemotaxis protein I; serine, four helical-bundle, signaling protein; 2.60A {Escherichia coli} SCOP: h.4.5.1
Probab=30.52 E-value=3e+02 Score=25.20 Aligned_cols=114 Identities=6% Similarity=-0.020 Sum_probs=0.0
Q ss_pred hhHHHHHHhhccccccc-hhhhhhhhHHHHHHHHHHHHHHhhhcchhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhHHHH
Q psy14534 56 SSQTNVKTLFNITKQIS-GVEHLHSSMMELLESIETIENKVDYNLPTIQREISKLEFGVAQINSTLQVVNETRESDANYL 134 (423)
Q Consensus 56 ~~~~l~~~~~n~s~q~~-~~~k~~~s~~el~e~ve~~~~~~d~~ip~~~~EI~e~e~~l~q~ts~l~~~~Ee~~n~s~~i 134 (423)
|-+.|++.-...+.+|. .++.+...+.+-.+.++.....| ..+-+.-.+|...=.++...+.++...-+++...-.+|
T Consensus 109 EVRkLA~~t~~at~~I~~~i~~~~~~v~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~i~~i 187 (227)
T 1qu7_A 109 EVRNLAQRSAQAAREIKSLIEDSVGKVDVGSTLVESAGETM-AEIVSAVTRVTDIMGEIASASDEQSRGIDQVGLAVAEM 187 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHH-HHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q psy14534 135 KSTVSTLATLQEKVEANNIIMQALSDANYLKSTVSTLA 172 (423)
Q Consensus 135 ~s~~~sis~lqek~~~~~kv~~le~Q~~~I~~l~~~v~ 172 (423)
...++.. ...--+.......|.++...|..++..+.
T Consensus 188 ~~~~~~~--~~~~~~~~~~~~~L~~~a~~L~~~v~~Fk 223 (227)
T 1qu7_A 188 DRVTQQN--AALVEQSAAAAAALEEQASRLTEAVAVFR 223 (227)
T ss_dssp HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 161
>3zx6_A HAMP, methyl-accepting chemotaxis protein I; signaling, HAMP domain, TSR receptor, fusion; 2.65A {Archaeoglobus fulgidus}
Probab=29.66 E-value=3.8e+02 Score=25.70 Aligned_cols=130 Identities=12% Similarity=0.143 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhccccccc-hhhhhhhhHHHHHHHHHHHHHHhhhcchhHHHHHHhhhhhh
Q psy14534 35 KMKTLQAINEEILQRISHLETSSQTNVKTLFNITKQIS-GVEHLHSSMMELLESIETIENKVDYNLPTIQREISKLEFGV 113 (423)
Q Consensus 35 ~~~~l~~~~~~~~~r~~~~e~~~~~l~~~~~n~s~q~~-~~~k~~~s~~el~e~ve~~~~~~d~~ip~~~~EI~e~e~~l 113 (423)
++..|-+-+..+.+.|+.+-......+..+...+.+|+ ..+.+...+.+.-+.++.+-..+ .++...|.+.....
T Consensus 35 Eig~l~~~~n~~~~~l~~~i~~v~~~~~~l~~~~~~l~~~~~~~~~~~~~q~~~~~~~~~~~----~el~~~~~~~~~~~ 110 (341)
T 3zx6_A 35 EIGILAKSIERLRRSLMRTVGDVRNGANAIYSGASEIATGNNDLSSRTEQQAASLEETAASM----EQLTATVKQNAENA 110 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Q ss_pred hhhhhhhhhhhhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy14534 114 AQINSTLQVVNETRESDANYLKSTVSTLATLQEKVEANNIIMQALSDANYLKSTVSTLATL 174 (423)
Q Consensus 114 ~q~ts~l~~~~Ee~~n~s~~i~s~~~sis~lqek~~~~~kv~~le~Q~~~I~~l~~~v~~~ 174 (423)
.+.........+........+......+..|.+.++--..+ ...|...-.+.+-|
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~I~~i------~~~I~~IA~QTNLL 165 (341)
T 3zx6_A 111 RQASHLALSASETAQRGGKVVDNVVQTMRDISTSSQKIADI------ISVIDGIAFQTNIL 165 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHH
No 162
>4dvz_A Cytotoxicity-associated immunodominant antigen; oncoprotein; 3.19A {Helicobacter pylori}
Probab=29.63 E-value=1.7e+02 Score=30.05 Aligned_cols=25 Identities=24% Similarity=0.182 Sum_probs=16.2
Q ss_pred HHHHHHhhhcchhHHHHHHhhhhhh
Q psy14534 89 ETIENKVDYNLPTIQREISKLEFGV 113 (423)
Q Consensus 89 e~~~~~~d~~ip~~~~EI~e~e~~l 113 (423)
|.=-.++.+++++|++|+...=+++
T Consensus 411 earAtal~kNfsgIrkELsdKleN~ 435 (569)
T 4dvz_A 411 DARAIAYTQNLKGIKRELSDKLEKI 435 (569)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHhhhhhHHhHHHHHHHHhhh
Confidence 3334567788888888877664443
No 163
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=29.16 E-value=1.3e+02 Score=30.77 Aligned_cols=34 Identities=18% Similarity=0.075 Sum_probs=23.3
Q ss_pred HHHHHhhhhhhhhhhhhhhhhhhhhhhhHHHHHH
Q psy14534 103 QREISKLEFGVAQINSTLQVVNETRESDANYLKS 136 (423)
Q Consensus 103 ~~EI~e~e~~l~q~ts~l~~~~Ee~~n~s~~i~s 136 (423)
=.+|.+++..-+++-.++..++.+.+.++++|..
T Consensus 30 ~~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~ 63 (455)
T 2dq0_A 30 VDEILKLDTEWRTKLKEINRLRHERNKIAVEIGK 63 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566667777777777777777777777777665
No 164
>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein transport, HIV-1; 1.80A {Homo sapiens}
Probab=29.09 E-value=1.4e+02 Score=23.36 Aligned_cols=18 Identities=28% Similarity=0.425 Sum_probs=8.7
Q ss_pred HHHHhhHHHHHHHHHHHH
Q psy14534 19 LKTKHHLEKEQHVINHKM 36 (423)
Q Consensus 19 ~~~~~~le~~~~~~~~~~ 36 (423)
++++.-|+++++.|..++
T Consensus 12 r~~~d~L~kkq~~L~~~i 29 (79)
T 4abm_A 12 RDTEEMLSKKQEFLEKKI 29 (79)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444455555555544443
No 165
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=29.04 E-value=2.2e+02 Score=22.81 Aligned_cols=23 Identities=17% Similarity=0.187 Sum_probs=15.1
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHh
Q psy14534 73 GVEHLHSSMMELLESIETIENKV 95 (423)
Q Consensus 73 ~~~k~~~s~~el~e~ve~~~~~~ 95 (423)
+||.++..|.-|-...+...+++
T Consensus 3 ~md~iKkKm~~lk~e~e~a~d~a 25 (101)
T 3u59_A 3 SMEAIKKKMQMLKLDKENAIDRA 25 (101)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777766666666666666
No 166
>3zrx_A AF1503 protein, osmolarity sensor protein ENVZ; signaling protein, osmoregulation, OMPR, OMPC; 1.25A {Archaeoglobus fulgidus} PDB: 3zrv_A 3zrw_A 3zrw_B 2lfs_A 2lfr_A 1joy_A 2l7i_A 2y20_A 2l7h_A 2y21_A 2y0t_A 2y0q_A
Probab=29.01 E-value=1.8e+02 Score=21.57 Aligned_cols=6 Identities=17% Similarity=0.080 Sum_probs=2.2
Q ss_pred hHHHHH
Q psy14534 160 DANYLK 165 (423)
Q Consensus 160 Q~~~I~ 165 (423)
+...+.
T Consensus 99 ~~~~~~ 104 (115)
T 3zrx_A 99 DIEECN 104 (115)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 167
>1uru_A Amphiphysin; endocytosis, coiled-coil, membrane curvature; 2.6A {Drosophila melanogaster} SCOP: a.238.1.1
Probab=28.96 E-value=3.1e+02 Score=24.42 Aligned_cols=53 Identities=9% Similarity=0.030 Sum_probs=34.2
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhccccccc
Q psy14534 20 KTKHHLEKEQHVINHKMKTLQAINEEILQRISHLETSSQTNVKTLFNITKQIS 72 (423)
Q Consensus 20 ~~~~~le~~~~~~~~~~~~l~~~~~~~~~r~~~~e~~~~~l~~~~~n~s~q~~ 72 (423)
++...+++....+...+..|.+......+-++.+-..+..++..+..+..++.
T Consensus 37 ~~fe~~~~~f~~~e~~~~~l~k~~~~y~~~~~~~~~~~~~l~~~~~~l~~~~~ 89 (244)
T 1uru_A 37 EIFDDHLNNFNRQQASANRLQKEFNNYIRCVRAAQAASKTLMDSVCEIYEPQW 89 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 44555666666666666667666666666666666667777777766554443
No 168
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=28.89 E-value=85 Score=24.22 Aligned_cols=19 Identities=21% Similarity=0.111 Sum_probs=8.8
Q ss_pred HHHHHHhhhhhhhhhHHHH
Q psy14534 43 NEEILQRISHLETSSQTNV 61 (423)
Q Consensus 43 ~~~~~~r~~~~e~~~~~l~ 61 (423)
.+++..+|+.||.....|.
T Consensus 24 ReRK~~~i~~LE~~v~~le 42 (70)
T 1gd2_E 24 RKRKEDHLKALETQVVTLK 42 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444
No 169
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=28.69 E-value=1.3e+02 Score=30.31 Aligned_cols=32 Identities=22% Similarity=0.272 Sum_probs=18.3
Q ss_pred HHHHhhhhhhhhhhhhhhhhhhhhhhhHHHHH
Q psy14534 104 REISKLEFGVAQINSTLQVVNETRESDANYLK 135 (423)
Q Consensus 104 ~EI~e~e~~l~q~ts~l~~~~Ee~~n~s~~i~ 135 (423)
.+|.+++..-+++..++..++.+.+.++++|.
T Consensus 28 ~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~ 59 (421)
T 1ses_A 28 EALLALDREVQELKKRLQEVQTERNQVAKRVP 59 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555555555554
No 170
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=28.61 E-value=1.1e+02 Score=29.05 Aligned_cols=48 Identities=21% Similarity=0.293 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhccccccchhh
Q psy14534 28 EQHVINHKMKTLQAINEEILQRISHLETSSQTNVKTLFNITKQISGVE 75 (423)
Q Consensus 28 ~~~~~~~~~~~l~~~~~~~~~r~~~~e~~~~~l~~~~~n~s~q~~~~~ 75 (423)
.++.++.+++.|+...+-+.+||..||...-.|-..+..|.-+|..+.
T Consensus 178 EI~EID~KI~~L~~mR~~vl~RLA~lEqdEl~LE~eL~~V~~Rief~q 225 (242)
T 3uux_B 178 EIRDIEVEVENLRQKKEKLLGKIANIEQNQLLLEDNLKQIDDRLDFLE 225 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 344444455555444555666666666666666665555555554433
No 171
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=28.41 E-value=2e+02 Score=22.14 Aligned_cols=32 Identities=25% Similarity=0.353 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHH
Q psy14534 31 VINHKMKTLQAINEEILQRISHLETSSQTNVK 62 (423)
Q Consensus 31 ~~~~~~~~l~~~~~~~~~r~~~~e~~~~~l~~ 62 (423)
.+.++|..|+...+.-.+|+..++...+..-.
T Consensus 3 ~ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e~ 34 (81)
T 1ic2_A 3 AIKKKMQMLKLDKENALDRAEQAEADKKAAEE 34 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666655555666666666655555443
No 172
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=27.80 E-value=61 Score=33.77 Aligned_cols=29 Identities=17% Similarity=0.161 Sum_probs=17.9
Q ss_pred HHHHhhhhhhhhhHHHHHHhhccccccch
Q psy14534 45 EILQRISHLETSSQTNVKTLFNITKQISG 73 (423)
Q Consensus 45 ~~~~r~~~~e~~~~~l~~~~~n~s~q~~~ 73 (423)
.++++-|.+..+...|..+..-+|++|..
T Consensus 37 ~ld~~~r~~~~~~~~l~~~rn~~sk~i~~ 65 (485)
T 3qne_A 37 AEYKEWVKLRFDLDEHNKKLNSVQKEIGK 65 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666666653
No 173
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=27.63 E-value=1e+02 Score=20.98 Aligned_cols=30 Identities=10% Similarity=0.161 Sum_probs=20.8
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14534 20 KTKHHLEKEQHVINHKMKTLQAINEEILQR 49 (423)
Q Consensus 20 ~~~~~le~~~~~~~~~~~~l~~~~~~~~~r 49 (423)
+++.|||-+-++|-.+...|+..+.++-+.
T Consensus 1 eRMnQLE~KVEeLl~~~~~Le~eV~RLk~l 30 (36)
T 1kd8_B 1 XKVKQLKAKVEELKSKLWHLKNKVARLKKK 30 (36)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 357788888888887777776665555443
No 174
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=27.55 E-value=54 Score=26.03 Aligned_cols=28 Identities=18% Similarity=0.328 Sum_probs=16.9
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q psy14534 18 FLKTKHHLEKEQHVINHKMKTLQAINEE 45 (423)
Q Consensus 18 ~~~~~~~le~~~~~~~~~~~~l~~~~~~ 45 (423)
+.++|..+|.....|.+++..++..+++
T Consensus 11 ~~~klq~~E~rN~~Le~~v~~le~~Le~ 38 (79)
T 3cvf_A 11 TQQKVQDLETRNAELEHQLRAMERSLEE 38 (79)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 4455666666666666666666555544
No 175
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=27.33 E-value=1.4e+02 Score=21.63 Aligned_cols=33 Identities=15% Similarity=0.218 Sum_probs=23.5
Q ss_pred HHHHHHHHHHhhhhhhhhhHHHHHHhhcccccc
Q psy14534 39 LQAINEEILQRISHLETSSQTNVKTLFNITKQI 71 (423)
Q Consensus 39 l~~~~~~~~~r~~~~e~~~~~l~~~~~n~s~q~ 71 (423)
.+++++.+..+|..|+.+-..|..++..++..+
T Consensus 20 Kk~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 20 KKEYVKSLENRVAVLENQNKTLIEELKALKDLY 52 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344677778888888888777777776665544
No 176
>2q12_A DIP13 alpha, DCC-interacting protein 13 alpha; APPL1, BAR domain, protein transport; 1.79A {Homo sapiens} PDB: 2z0n_A
Probab=27.24 E-value=3.6e+02 Score=24.64 Aligned_cols=53 Identities=17% Similarity=0.139 Sum_probs=46.7
Q ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhcccc
Q psy14534 17 LFLKTKHHLEKEQHVINHKMKTLQAINEEILQRISHLETSSQTNVKTLFNITK 69 (423)
Q Consensus 17 ~~~~~~~~le~~~~~~~~~~~~l~~~~~~~~~r~~~~e~~~~~l~~~~~n~s~ 69 (423)
.+|++|+.+|.....+...++.+.|....+-+-.+.+......++..+.+++.
T Consensus 18 ~FR~~l~~~E~~~~~l~~~l~kl~k~~~~~~~a~~~~~~a~~~f~~~L~~~~~ 70 (265)
T 2q12_A 18 QTRSLLGVFEEDATAISNYMNQLYQAMHRIYDAQNELSAATHLTSKLLKEYEK 70 (265)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 57899999999999999999999998888888888888888888888877654
No 177
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=26.52 E-value=1e+02 Score=20.65 Aligned_cols=31 Identities=13% Similarity=0.042 Sum_probs=22.8
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14534 20 KTKHHLEKEQHVINHKMKTLQAINEEILQRI 50 (423)
Q Consensus 20 ~~~~~le~~~~~~~~~~~~l~~~~~~~~~r~ 50 (423)
+++.|||-+-+.|..+-.+|++.++++-+-|
T Consensus 1 eRMnQLE~kVEeLl~~n~~Le~eV~rLk~ll 31 (34)
T 2oxj_A 1 XRMXQLEXKVXELLXKNXHLEXEVXRLKXLV 31 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 3578899998888888888877777665544
No 178
>2ba2_A D12_ORF131, hypothetical UPF0134 protein MPN010; DUF16, hypothetical protein, coiled-coil, stutter, structural genomics, PSI; 1.80A {Mycoplasma pneumoniae} SCOP: h.1.30.1
Probab=26.27 E-value=1.1e+02 Score=24.60 Aligned_cols=10 Identities=10% Similarity=0.345 Sum_probs=4.2
Q ss_pred hhHHHHHHHH
Q psy14534 79 SSMMELLESI 88 (423)
Q Consensus 79 ~s~~el~e~v 88 (423)
++|..=|+++
T Consensus 74 ~~~nkRLDkl 83 (85)
T 2ba2_A 74 QGINKRLDNL 83 (85)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHhhcc
Confidence 3444444443
No 179
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=26.19 E-value=1.4e+02 Score=25.23 Aligned_cols=40 Identities=15% Similarity=0.221 Sum_probs=24.8
Q ss_pred HHhhHHHHHHHHHHHHHHH----HHHHHHHHHhhhhhhhhhHHH
Q psy14534 21 TKHHLEKEQHVINHKMKTL----QAINEEILQRISHLETSSQTN 60 (423)
Q Consensus 21 ~~~~le~~~~~~~~~~~~l----~~~~~~~~~r~~~~e~~~~~l 60 (423)
+|.+|-+....+.-++..+ +.....+..||..||.++..-
T Consensus 16 ~Ie~Lkreie~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~ 59 (120)
T 3i00_A 16 LIERLYREISGLKAQLENMKTESQRVVLQLKGHVSELEADLAEQ 59 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666665555554444 334566888888888875543
No 180
>2olt_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: MSE; 2.00A {Shewanella oneidensis} PDB: 2iiu_A*
Probab=26.08 E-value=3.5e+02 Score=24.07 Aligned_cols=19 Identities=16% Similarity=0.202 Sum_probs=11.5
Q ss_pred HHHHHhhHHHHHHHHHHHH
Q psy14534 18 FLKTKHHLEKEQHVINHKM 36 (423)
Q Consensus 18 ~~~~~~~le~~~~~~~~~~ 36 (423)
+.++|+.+|+.-..+.+++
T Consensus 51 ~~~~i~~~E~~aD~l~~~I 69 (227)
T 2olt_A 51 IRKQISLAEKQGDSLKREI 69 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666553
No 181
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=25.61 E-value=3.3e+02 Score=23.62 Aligned_cols=61 Identities=18% Similarity=0.177 Sum_probs=28.8
Q ss_pred hHHHHHHHHHHHHHHhhhcchhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhh
Q psy14534 80 SMMELLESIETIENKVDYNLPTIQREISKLEFGVAQINSTLQVVNETRESDANYLKSTVSTL 141 (423)
Q Consensus 80 s~~el~e~ve~~~~~~d~~ip~~~~EI~e~e~~l~q~ts~l~~~~Ee~~n~s~~i~s~~~si 141 (423)
.|-+.|+.|+.+...+ ..|...-.+|.++-..+-.++...+.+++++..+..+++.++..|
T Consensus 37 ~m~~F~~~v~~I~~~i-~~i~~~v~~l~~~~~~~L~~~~~~~~~k~~le~l~~~i~~~a~~i 97 (180)
T 1s94_A 37 FMEEFFEQVEEIRAMI-DKISDNVDAVKKKHSDILSAPQTDDQMKEELEELMTDIKRTANKV 97 (180)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 3446677777766666 344444445555544433333334445555555555555555544
No 182
>4egw_A Magnesium transport protein CORA; magnesium transporter, magnesium binding, metal transp; 2.50A {Methanocaldococcus jannaschii}
Probab=25.47 E-value=2.5e+02 Score=25.95 Aligned_cols=33 Identities=12% Similarity=0.242 Sum_probs=16.0
Q ss_pred HHHHHHHhhhhhhhh-----hHHHHHHhhccccccchh
Q psy14534 42 INEEILQRISHLETS-----SQTNVKTLFNITKQISGV 74 (423)
Q Consensus 42 ~~~~~~~r~~~~e~~-----~~~l~~~~~n~s~q~~~~ 74 (423)
..+.+.+++..+|.+ .+....+++.+.+++..+
T Consensus 172 ~l~~i~~~id~lE~~l~~~~~~~~l~~i~~lrr~l~~l 209 (280)
T 4egw_A 172 ILMNLEDELEELEDKLLAGYDREVMEKILGLRKTLVYF 209 (280)
T ss_dssp HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHH
Confidence 345566666665554 223334445555544433
No 183
>1bg1_A Protein (transcription factor STAT3B); protein-DNA complex, cytokine activation, complex (transcription factor/DNA), transcription/DNA complex; HET: DNA PTR; 2.25A {Mus musculus} SCOP: a.47.1.1 b.2.5.5 d.93.1.1 PDB: 3cwg_A
Probab=24.91 E-value=5e+02 Score=27.69 Aligned_cols=34 Identities=9% Similarity=0.238 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHH
Q psy14534 28 EQHVINHKMKTLQAINEEILQRISHLETSSQTNV 61 (423)
Q Consensus 28 ~~~~~~~~~~~l~~~~~~~~~r~~~~e~~~~~l~ 61 (423)
++.+++.++..|...++.++.-|+.||-.|....
T Consensus 14 k~~ei~~~v~~lr~~~q~~e~~ik~Le~~Qe~f~ 47 (596)
T 1bg1_A 14 KQQMLEQHLQDVRKRVQDLEQKMKVVENLQDDFD 47 (596)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444555555565555666666666666665543
No 184
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=24.90 E-value=63 Score=25.34 Aligned_cols=51 Identities=20% Similarity=0.151 Sum_probs=23.3
Q ss_pred HHHHHHHHHHhhhhhhhhhHHHHHHhhccccccchhhhhhhhHHHHHHHHHHHH
Q psy14534 39 LQAINEEILQRISHLETSSQTNVKTLFNITKQISGVEHLHSSMMELLESIETIE 92 (423)
Q Consensus 39 l~~~~~~~~~r~~~~e~~~~~l~~~~~n~s~q~~~~~k~~~s~~el~e~ve~~~ 92 (423)
++.+..+++.||-+.|.+...|...++--.++| +++...+-.|.+.+..++
T Consensus 12 le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~I---d~L~~ql~~L~~rl~~~~ 62 (78)
T 3efg_A 12 LEARLVELETRLSFQEQALTELSEALADARLTG---ARNAELIRHLLEDLGKVR 62 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhh
Confidence 344445555555555555555555444433333 444444544444444444
No 185
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=24.77 E-value=2.1e+02 Score=24.01 Aligned_cols=31 Identities=23% Similarity=0.268 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHhhhcchhHHHHHHhhhhhhhh
Q psy14534 81 MMELLESIETIENKVDYNLPTIQREISKLEFGVAQ 115 (423)
Q Consensus 81 ~~el~e~ve~~~~~~d~~ip~~~~EI~e~e~~l~q 115 (423)
+-.|-..|...|+++ -....+|.+++.++++
T Consensus 26 i~~L~~~L~~AEeaL----~~Kq~~idelk~ei~q 56 (110)
T 2v4h_A 26 LEDLRQQLQQAEEAL----VAKQELIDKLKEEAEQ 56 (110)
T ss_dssp HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 345555555555544 3366666666666655
No 186
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=24.75 E-value=1.4e+02 Score=22.26 Aligned_cols=32 Identities=22% Similarity=0.213 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHh
Q psy14534 33 NHKMKTLQAINEEILQRISHLETSSQTNVKTL 64 (423)
Q Consensus 33 ~~~~~~l~~~~~~~~~r~~~~e~~~~~l~~~~ 64 (423)
..+...|++.+..+..+|..|+.+...|..-+
T Consensus 29 e~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 29 TGECKELEKKNEALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555666666666555554433
No 187
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=24.60 E-value=5.1e+02 Score=26.15 Aligned_cols=35 Identities=17% Similarity=0.546 Sum_probs=0.0
Q ss_pred cccCCCCCccCcCCCCCCCcccCCCCCCCCCCCCccCCcccccCCC
Q psy14534 340 GYHGNASDAMTYQNNMKFSTIDRDNDLSNTHCASNYEGGWWFSHCL 385 (423)
Q Consensus 340 ~ysG~agDsl~~hng~~FST~DrDnD~~~~nCA~~~~GGWWy~~C~ 385 (423)
.|.+...|-|++..|..+.-.+++. .+|||...|.
T Consensus 436 dy~~~~~~eLsf~~Gd~i~vl~~~~-----------~~~Ww~g~~~ 470 (486)
T 3haj_A 436 DYEGQEHDELSFKAGDELTKMEDED-----------EQGWCKGRLD 470 (486)
T ss_dssp ----------------------------------------------
T ss_pred ccCCCCCCcCccCCCCEEEEEEecC-----------CCCeeEEEeC
Confidence 3555556667766666555444321 3579986653
No 188
>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A
Probab=24.60 E-value=4.8e+02 Score=25.18 Aligned_cols=53 Identities=17% Similarity=0.139 Sum_probs=42.3
Q ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhcccc
Q psy14534 17 LFLKTKHHLEKEQHVINHKMKTLQAINEEILQRISHLETSSQTNVKTLFNITK 69 (423)
Q Consensus 17 ~~~~~~~~le~~~~~~~~~~~~l~~~~~~~~~r~~~~e~~~~~l~~~~~n~s~ 69 (423)
.|+++|+.+|.....+...++.+-|....+-+-.+.+-.+.+.+++.+...+.
T Consensus 18 ~FR~~l~~~E~~~~~l~~~l~kl~k~~~~~~~a~~~~~~a~~~f~~~L~~~~~ 70 (385)
T 2q13_A 18 QTRSLLGVFEEDATAISNYMNQLYQAMHRIYDAQNELSAATHLTSKLLKEYEK 70 (385)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 48999999999999999999999888887777777766667777766665443
No 189
>2oee_A UPF0342 protein YHEA; MCSG, structural genomics, PSI-2, protein structure in midwest center for structural genomics, unknown function; HET: MSE; 1.96A {Bacillus subtilis} SCOP: a.281.1.2
Probab=24.57 E-value=2.2e+02 Score=23.05 Aligned_cols=88 Identities=10% Similarity=0.096 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHhhhcchhHHH-----HHHhhhhhhhhhhhhhhhhhhhhhhhHHHH----HHHHhhhHHHHHHHHHHHH
Q psy14534 83 ELLESIETIENKVDYNLPTIQR-----EISKLEFGVAQINSTLQVVNETRESDANYL----KSTVSTLATLQEKVEANNI 153 (423)
Q Consensus 83 el~e~ve~~~~~~d~~ip~~~~-----EI~e~e~~l~q~ts~l~~~~Ee~~n~s~~i----~s~~~sis~lqek~~~~~k 153 (423)
.|++....|...+ ..-|+++. +--+...++.+.-.+.+.++.++.+....= ......+..++++++.+..
T Consensus 4 ~I~d~A~eL~~~I-~~s~ey~~~~~a~~~i~~d~ea~~l~~~f~~~q~~~~~~q~~G~~~~~e~~~~~~~l~~~i~~~p~ 82 (117)
T 2oee_A 4 NFYDVAYDLENAL-RGSEEFTRLKNLYDEVNADESAKRMFENFRDVQLRLQQKQMAGEEITQEEVTQAQKTVALVQQHEK 82 (117)
T ss_dssp CHHHHHHHHHHHH-HTSHHHHHHHHHHHHHHHSHHHHHHHHHHHHHCC------------------CHHHHHHHHHTSHH
T ss_pred HHHHHHHHHHHHH-HhCHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhcCHH
Confidence 4555555555555 33444321 111222333344444444454444432222 1233445556666666666
Q ss_pred HHHHHhhHHHHHHHHHHH
Q psy14534 154 IMQALSDANYLKSTVSTL 171 (423)
Q Consensus 154 v~~le~Q~~~I~~l~~~v 171 (423)
|....+....+..+++.|
T Consensus 83 v~~y~~Ae~~l~~ll~~I 100 (117)
T 2oee_A 83 ISQLMEAEQRMSMLIGEL 100 (117)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 665555555555554444
No 190
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=24.40 E-value=2.4e+02 Score=27.74 Aligned_cols=75 Identities=11% Similarity=0.213 Sum_probs=48.4
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHhhhcchhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhhHHHHHHHH
Q psy14534 73 GVEHLHSSMMELLESIETIENKVDYNLPTIQREISKLEFGVAQINSTLQVVNETRESDANYLKSTVSTLATLQEKVE 149 (423)
Q Consensus 73 ~~~k~~~s~~el~e~ve~~~~~~d~~ip~~~~EI~e~e~~l~q~ts~l~~~~Ee~~n~s~~i~s~~~sis~lqek~~ 149 (423)
-++.+.-+++.+.++|-.+-+.|+.....+-..+.+. .-....+.|..++.++......+...++.+++++.++.
T Consensus 80 W~d~~~p~Iv~~~~~I~~Y~~~f~syy~~L~~~~d~~--d~~~l~~~L~~L~~~i~~~q~~~~~~~~~L~~F~~~l~ 154 (346)
T 2nrj_A 80 WDTKVKKQLLDTLNGIVEYDTTFDNYYETMVEAINTG--DGETLKEGITDLRGEIQQNQKYAQQLIEELTKLRDSIG 154 (346)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557788888888888888888766655554433321 12234455666667777777777777777766666653
No 191
>3g67_A Methyl-accepting chemotaxis protein; four-helix bundle, signaling protein; 2.17A {Thermotoga maritima} PDB: 3g6b_A 3ur1_C
Probab=23.96 E-value=4.2e+02 Score=24.21 Aligned_cols=23 Identities=9% Similarity=0.270 Sum_probs=12.6
Q ss_pred cchhHHHHHHhhhhhhhhhhhhh
Q psy14534 98 NLPTIQREISKLEFGVAQINSTL 120 (423)
Q Consensus 98 ~ip~~~~EI~e~e~~l~q~ts~l 120 (423)
.+..+-.||++|=...+..+.+.
T Consensus 113 GFaVVA~Evr~La~~t~~~~~~I 135 (213)
T 3g67_A 113 GFMIVANEVQNLSNETNEVTKQI 135 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666655554444433
No 192
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=23.76 E-value=3.2e+02 Score=22.84 Aligned_cols=40 Identities=15% Similarity=0.253 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhcc
Q psy14534 28 EQHVINHKMKTLQAINEEILQRISHLETSSQTNVKTLFNI 67 (423)
Q Consensus 28 ~~~~~~~~~~~l~~~~~~~~~r~~~~e~~~~~l~~~~~n~ 67 (423)
.+..|.+++..|.+..+.+..+||.||..---|-.+--++
T Consensus 36 ~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t 75 (111)
T 2v66_B 36 QVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRAT 75 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHH
Confidence 3444555555565556677778888887766555444443
No 193
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=23.27 E-value=3e+02 Score=22.23 Aligned_cols=60 Identities=18% Similarity=0.228 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHhhhcchhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhh
Q psy14534 81 MMELLESIETIENKVDYNLPTIQREISKLEFGVAQINSTLQVVNETRESDANYLKSTVSTL 141 (423)
Q Consensus 81 ~~el~e~ve~~~~~~d~~ip~~~~EI~e~e~~l~q~ts~l~~~~Ee~~n~s~~i~s~~~si 141 (423)
|-+.|+.|+.+...++ .|...-.+|+++-..+-..+...+.++.++..+..+|+.++..|
T Consensus 7 m~~F~~~v~~I~~~i~-~i~~~v~~l~~~~~~~L~~~~~~~~~~~~l~~l~~~i~~~a~~i 66 (127)
T 1ez3_A 7 MDEFFEQVEEIRGFID-KIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKV 66 (127)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777666663 33333335555544432222333444555555555555555444
No 194
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=23.20 E-value=1.4e+02 Score=25.51 Aligned_cols=32 Identities=22% Similarity=0.200 Sum_probs=15.4
Q ss_pred HHHHHhhhhhhhhhhhhhhhhhhhhhhhHHHH
Q psy14534 103 QREISKLEFGVAQINSTLQVVNETRESDANYL 134 (423)
Q Consensus 103 ~~EI~e~e~~l~q~ts~l~~~~Ee~~n~s~~i 134 (423)
...++|++.+++.++-+|+..-+|++.+++..
T Consensus 70 q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~ 101 (121)
T 3mq7_A 70 QKKVEELEGEITTLNHKLQDASAEVERLRREN 101 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44455555555555554444444444444433
No 195
>3kpe_A Fusion glycoprotein F0; peptide-small-molecule complex, alpha helix, coiled-coil, EN protein, fusion protein; HET: TM3 PG4; 1.47A {Human respiratory syncytial virus} PDB: 1g2c_A
Probab=23.18 E-value=1.2e+02 Score=22.14 Aligned_cols=37 Identities=24% Similarity=0.214 Sum_probs=21.8
Q ss_pred hhhhhhhhhhhhhhhhhhhHHHHHHHHhhhHHHHHHH
Q psy14534 112 GVAQINSTLQVVNETRESDANYLKSTVSTLATLQEKV 148 (423)
Q Consensus 112 ~l~q~ts~l~~~~Ee~~n~s~~i~s~~~sis~lqek~ 148 (423)
++.++..-++..||-+..++.-+...+.-|+++|+.+
T Consensus 5 ~I~~Lk~ai~~TNeAV~~L~~g~~~la~Av~~iQ~~I 41 (51)
T 3kpe_A 5 EVNKIKSALLSTNKAVVSLSNGVSVLTSKVLDLKNYI 41 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555556666666666666666666666655
No 196
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.15 E-value=3.1e+02 Score=22.92 Aligned_cols=6 Identities=0% Similarity=0.290 Sum_probs=2.2
Q ss_pred HHHHHH
Q psy14534 88 IETIEN 93 (423)
Q Consensus 88 ve~~~~ 93 (423)
|..|..
T Consensus 37 v~~LGT 42 (130)
T 2dnx_A 37 MSQLGT 42 (130)
T ss_dssp HHHHCS
T ss_pred HHHhCC
Confidence 333333
No 197
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=23.08 E-value=2.9e+02 Score=22.02 Aligned_cols=25 Identities=8% Similarity=0.131 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhHHH
Q psy14534 36 MKTLQAINEEILQRISHLETSSQTN 60 (423)
Q Consensus 36 ~~~l~~~~~~~~~r~~~~e~~~~~l 60 (423)
+..+++..+.+...+..++.+.+++
T Consensus 15 ~~~l~~~~~~l~~q~~~l~~~~~e~ 39 (117)
T 2zqm_A 15 LESYQQQLQLVVQQKQKVQLELTEA 39 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334334444444444444444443
No 198
>2i0n_A Class VII unconventional myosin; beta-sheet loop, structural protein; NMR {Dictyostelium discoideum}
Probab=23.05 E-value=24 Score=26.91 Aligned_cols=36 Identities=17% Similarity=0.437 Sum_probs=22.2
Q ss_pred cccccCCCCCccCcCCCCCCCcccCCCCCCCCCCCCccCCcccccCC
Q psy14534 338 LSGYHGNASDAMTYQNNMKFSTIDRDNDLSNTHCASNYEGGWWFSHC 384 (423)
Q Consensus 338 lg~ysG~agDsl~~hng~~FST~DrDnD~~~~nCA~~~~GGWWy~~C 384 (423)
+-.|.+...|.|++..|..+.-.++++ .||||+..|
T Consensus 16 lydy~~~~~~eLsf~~Gd~i~v~~~~~-----------~~gWw~g~~ 51 (80)
T 2i0n_A 16 LKDYNVSDTSLLPFKRNDIITITFKDQ-----------ENKWFMGQL 51 (80)
T ss_dssp SSCBCCCSSSSCCBCSSEEEEEEEESS-----------SSSEEEEEE
T ss_pred CCCCCcCCCCCcCCCCCCEEEEEEecC-----------CCCEEEEEE
Confidence 445666666777777776555555431 356997653
No 199
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=22.97 E-value=2.9e+02 Score=22.03 Aligned_cols=53 Identities=13% Similarity=0.149 Sum_probs=28.7
Q ss_pred hhhhhhhhhhhhhhHHHHHHHHhhhHHH----HHHHHHHHHHHHHHhhHHH-HHHHHH
Q psy14534 117 NSTLQVVNETRESDANYLKSTVSTLATL----QEKVEANNIIMQALSDANY-LKSTVS 169 (423)
Q Consensus 117 ts~l~~~~Ee~~n~s~~i~s~~~sis~l----qek~~~~~kv~~le~Q~~~-I~~l~~ 169 (423)
.+.++.+...+.++..-|..|-..+.++ ..+..++.|+..-..++++ ++..++
T Consensus 33 k~~i~~ie~~ldEA~ell~qMelE~~~~~~p~~~R~~~~~klr~Yk~dl~~~lk~~lk 90 (97)
T 3onj_A 33 NTTLKHVEQQQDELFDLLDQMDVEVNNSIGDASERATYKAKLREWKKTIQSDIKRPLQ 90 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555555555555 4566667776655555555 554443
No 200
>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome; 2.95A {Homo sapiens}
Probab=22.79 E-value=5.6e+02 Score=26.02 Aligned_cols=53 Identities=15% Similarity=0.139 Sum_probs=30.8
Q ss_pred HHHHHHHhhhhhhhhhHHHHHHhhccccccc-hhhhhhhhHHHHHHHHHHHHHH
Q psy14534 42 INEEILQRISHLETSSQTNVKTLFNITKQIS-GVEHLHSSMMELLESIETIENK 94 (423)
Q Consensus 42 ~~~~~~~r~~~~e~~~~~l~~~~~n~s~q~~-~~~k~~~s~~el~e~ve~~~~~ 94 (423)
.++....||..+......|..+.+=.+..|. .++.|++..-.|.+-+...+..
T Consensus 141 EL~~~e~~i~~v~~~G~~Li~~~Hpas~~I~~r~~~L~~~W~~L~~l~~~R~~~ 194 (450)
T 3r6n_A 141 QLEVKEKELNKLKQESDQLVLNQHPASDKIEAYMDTLQTQWSWILQITKCIDVH 194 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHchHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666666666777666555555555 5666666655555554443333
No 201
>1z56_A Ligase interacting factor 1; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae}
Probab=22.62 E-value=78 Score=30.13 Aligned_cols=59 Identities=8% Similarity=0.134 Sum_probs=12.4
Q ss_pred HHHHHhhccccccc--hhhhhhhhHHHHHHHHHHHHHHhhhcchhHHHHHHhhhhhhhhhhhhhh
Q psy14534 59 TNVKTLFNITKQIS--GVEHLHSSMMELLESIETIENKVDYNLPTIQREISKLEFGVAQINSTLQ 121 (423)
Q Consensus 59 ~l~~~~~n~s~q~~--~~~k~~~s~~el~e~ve~~~~~~d~~ip~~~~EI~e~e~~l~q~ts~l~ 121 (423)
.+..++-.+++.|+ +|.....+-.+||+= =++....+..++-.+..+|....++.+.|.
T Consensus 128 tmrkri~~Itqrlg~ltL~~~~~~eIdLFew----A~~L~q~i~~ln~k~~~~E~si~~L~~qLe 188 (246)
T 1z56_A 128 VMELESSAIIRKIAELTLHPVKKGEIDLFEM----ADKLYKDICCVNDSYRNIKESDSSNRNRVE 188 (246)
T ss_dssp -----------------------------------CTTSGGGTTHHHHHHHHTTTTTTHHHHHHH
T ss_pred EEeehhhHHHhhheeEEeecCccchhhHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44578888999998 778888888899886 222223344444444444444444444443
No 202
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=22.40 E-value=2.8e+02 Score=24.07 Aligned_cols=98 Identities=12% Similarity=0.180 Sum_probs=57.2
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhhccccccchhhhhhhhHHHHHHHHHHHHHHhhhc
Q psy14534 19 LKTKHHLEKEQHVINHKMKTLQAINEEILQRISHLETSSQTNVKTLFNITKQISGVEHLHSSMMELLESIETIENKVDYN 98 (423)
Q Consensus 19 ~~~~~~le~~~~~~~~~~~~l~~~~~~~~~r~~~~e~~~~~l~~~~~n~s~q~~~~~k~~~s~~el~e~ve~~~~~~d~~ 98 (423)
.+.|...++.-..-.|-++.|+...-.-++|+..||.+++......-.+-+ ..+.+...+.-+=.+++..+++++
T Consensus 23 ~~kLeeaek~adE~eR~~k~lE~r~~~deEr~~~lE~qLkeak~~aeeadr---KyeE~~RKl~~~E~dLeraeeRae-- 97 (147)
T 2b9c_A 23 LQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADR---KYEEVARKLVIIESDLERAEERAE-- 97 (147)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 345666677777777778888777667778888888887765533322222 223343444444445555555552
Q ss_pred chhHHHHHHhhhhhhhhhhhhhhhh
Q psy14534 99 LPTIQREISKLEFGVAQINSTLQVV 123 (423)
Q Consensus 99 ip~~~~EI~e~e~~l~q~ts~l~~~ 123 (423)
....-|.+++.+|+..+..|+.+
T Consensus 98 --~aE~k~~eLEeeL~~~~~nlKsL 120 (147)
T 2b9c_A 98 --LSEGKCAELEEELKTVTNNLKSL 120 (147)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHHHhh
Confidence 23445566666666666666443
No 203
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=22.29 E-value=1.5e+02 Score=29.97 Aligned_cols=86 Identities=8% Similarity=0.112 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhcchh-HH--HHHHhhhhhhhhhhhhhhhhhhhhhhhHHHHHHH------HhhhHHHHHHHHHHHHH
Q psy14534 84 LLESIETIENKVDYNLPT-IQ--REISKLEFGVAQINSTLQVVNETRESDANYLKST------VSTLATLQEKVEANNII 154 (423)
Q Consensus 84 l~e~ve~~~~~~d~~ip~-~~--~EI~e~e~~l~q~ts~l~~~~Ee~~n~s~~i~s~------~~sis~lqek~~~~~kv 154 (423)
|.+..+.+..+..+---+ +. .+|.+++..-+++-.++..++.+.+.++++|..+ ++.+ +.+..++.+++
T Consensus 7 ~r~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l--~~~~~~~~~~~ 84 (425)
T 2dq3_A 7 IREKPDYVKERLATRDKELVSLVDKVLELDKRRREIIKRLEALRSERNKLSKEIGKLKREGKDTTEI--QNRVKELKEEI 84 (425)
T ss_dssp HHHCHHHHHHHHTTTCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSSCSCTTTS--TTHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccHHHH--HHHHHHHHHHH
Q ss_pred HHHHhhHHHHHHHHHHH
Q psy14534 155 MQALSDANYLKSTVSTL 171 (423)
Q Consensus 155 ~~le~Q~~~I~~l~~~v 171 (423)
..++++...+.+.+..+
T Consensus 85 ~~~~~~~~~~~~~~~~~ 101 (425)
T 2dq3_A 85 DRLEEELRKVEEELKNT 101 (425)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
No 204
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=22.27 E-value=1.2e+02 Score=20.52 Aligned_cols=31 Identities=16% Similarity=0.138 Sum_probs=20.5
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy14534 21 TKHHLEKEQHVINHKMKTLQAINEEILQRIS 51 (423)
Q Consensus 21 ~~~~le~~~~~~~~~~~~l~~~~~~~~~r~~ 51 (423)
++.|||-+-+.|-..-..|+..+.++.+-+.
T Consensus 2 RMnQLE~kVEeLl~~~~~Le~EV~RL~~ll~ 32 (36)
T 1kd8_A 2 EVKQLEAEVEEIESEVWHLENEVARLEKENA 32 (36)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 4677888887777776777666655555443
No 205
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=22.16 E-value=1.4e+02 Score=19.98 Aligned_cols=30 Identities=10% Similarity=0.067 Sum_probs=20.7
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14534 20 KTKHHLEKEQHVINHKMKTLQAINEEILQR 49 (423)
Q Consensus 20 ~~~~~le~~~~~~~~~~~~l~~~~~~~~~r 49 (423)
+++.|||-+-+.|-..-..|+..+.++-+.
T Consensus 1 eRMnQLEdKVEeLl~~~~~Le~EV~RLk~l 30 (34)
T 3c3f_A 1 XRMXQIEXKLEXILSXLYHXENEXARIXKL 30 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 357788888888877777776666555443
No 206
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=22.10 E-value=1.1e+02 Score=24.97 Aligned_cols=61 Identities=13% Similarity=0.077 Sum_probs=30.1
Q ss_pred hhhhhhhhHHHHHHhhccccccc--hhhhhhhhHHHHHHHHHHHHHHhhhcchhHHHHHHhhh
Q psy14534 50 ISHLETSSQTNVKTLFNITKQIS--GVEHLHSSMMELLESIETIENKVDYNLPTIQREISKLE 110 (423)
Q Consensus 50 ~~~~e~~~~~l~~~~~n~s~q~~--~~~k~~~s~~el~e~ve~~~~~~d~~ip~~~~EI~e~e 110 (423)
.+.|-.+...|..++.++|.|.- .--|+.-++-.|.+.+|.+-..+...-..+..-+.++|
T Consensus 25 ~~~lk~E~~~lk~E~~stSaQDeFAKWaKL~Rk~DKl~~ele~l~~~l~~~k~~F~~~~~~~~ 87 (93)
T 3sjb_C 25 YLAKVKERHELKEFNNSISAQDNYAKWTKNNRKLDSLDKEINNLKDEIQSENKAFQAHLHKLE 87 (93)
T ss_dssp HHHHHHHHHHHHHHHTTSCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444455666777777776653 34444445555555555555544444444444444443
No 207
>2rjz_A PILO protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.20A {Pseudomonas aeruginosa}
Probab=21.85 E-value=93 Score=26.86 Aligned_cols=26 Identities=8% Similarity=0.091 Sum_probs=13.6
Q ss_pred hhhhhhhhhhhhhhhHHHHHHHHhhh
Q psy14534 116 INSTLQVVNETRESDANYLKSTVSTL 141 (423)
Q Consensus 116 ~ts~l~~~~Ee~~n~s~~i~s~~~si 141 (423)
.++.|..+++++..+..++......+
T Consensus 13 ~aa~L~~l~~ql~~l~~~l~~l~~~L 38 (147)
T 2rjz_A 13 QAANLEAYKAQMKEMEESFGALLRQL 38 (147)
T ss_dssp GCSSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhC
Confidence 34555555555555555555555444
No 208
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=21.85 E-value=3.2e+02 Score=22.05 Aligned_cols=57 Identities=16% Similarity=0.263 Sum_probs=30.1
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHhhhc---chhHHHHHHhhhhhhhhhhhhhhhhhhhhhh
Q psy14534 73 GVEHLHSSMMELLESIETIENKVDYN---LPTIQREISKLEFGVAQINSTLQVVNETRES 129 (423)
Q Consensus 73 ~~~k~~~s~~el~e~ve~~~~~~d~~---ip~~~~EI~e~e~~l~q~ts~l~~~~Ee~~n 129 (423)
+||.++..|.-|--..+...++++.. +.+...+-.+.|.++..++-.++.+.+|+..
T Consensus 3 ~MdaIKkKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~ 62 (101)
T 3u1c_A 3 HMDAIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQ 62 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 46777777766666666666666432 2233334444444555554455444444443
No 209
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=21.72 E-value=1.5e+02 Score=20.33 Aligned_cols=31 Identities=13% Similarity=0.255 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhHHHHHHh
Q psy14534 34 HKMKTLQAINEEILQRISHLETSSQTNVKTL 64 (423)
Q Consensus 34 ~~~~~l~~~~~~~~~r~~~~e~~~~~l~~~~ 64 (423)
++|..|-.+.-.-.+||+.||.+-+.|..++
T Consensus 6 e~mq~LNdrlAsyidkVR~LE~~N~~Le~~i 36 (39)
T 1gk7_A 6 VELQELNDRFANYIDKVRFLEQQNKILLAEL 36 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355553333445689999999888877665
No 210
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=21.43 E-value=3e+02 Score=21.65 Aligned_cols=75 Identities=13% Similarity=0.163 Sum_probs=0.0
Q ss_pred HhhhcchhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhhHHHHHHHHH-HHHHHHHHhhHHHHHHHH
Q psy14534 94 KVDYNLPTIQREISKLEFGVAQINSTLQVVNETRESDANYLKSTVSTLATLQEKVEA-NNIIMQALSDANYLKSTV 168 (423)
Q Consensus 94 ~~d~~ip~~~~EI~e~e~~l~q~ts~l~~~~Ee~~n~s~~i~s~~~sis~lqek~~~-~~kv~~le~Q~~~I~~l~ 168 (423)
+.+.-+-.+..|++++...+.+.....+.+.+....+-.+.+.....++..+++... ......++.++..+..-+
T Consensus 11 ~~eeEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~~rl 86 (89)
T 3bas_A 11 RQEEEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLKKLV 86 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
No 211
>1awj_A ITK; transferase, regulatory intramolecular complex, kinase; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 2rn8_A 2rna_A 2k79_A 2k7a_A
Probab=21.38 E-value=1.3e+02 Score=22.31 Aligned_cols=38 Identities=18% Similarity=0.435 Sum_probs=23.3
Q ss_pred ccccccccCCCCCccCcCCCCCCCcccCCCCCCCCCCCCccCCcccccCC
Q psy14534 335 RLNLSGYHGNASDAMTYQNNMKFSTIDRDNDLSNTHCASNYEGGWWFSHC 384 (423)
Q Consensus 335 ~L~lg~ysG~agDsl~~hng~~FST~DrDnD~~~~nCA~~~~GGWWy~~C 384 (423)
...+-.|.+...|.|++..|..+.-.+.+ .+|||+..+
T Consensus 23 ~~alydy~~~~~~eLs~~~Gd~i~v~~~~------------~~~Ww~~~~ 60 (77)
T 1awj_A 23 VIALYDYQTNDPQELALRCDEEYYLLDSS------------EIHWWRVQD 60 (77)
T ss_dssp CCCCCCBCCCCTTSCCBCSSSCCSCCCTT------------SSSBCCCCC
T ss_pred EEECccCCCCCcCCcCCCCCCEEEEEEec------------CCCCEEEEE
Confidence 33455666766777777666655554432 368997654
No 212
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=20.65 E-value=1.3e+02 Score=31.29 Aligned_cols=11 Identities=0% Similarity=-0.260 Sum_probs=6.5
Q ss_pred CCceEEEECCC
Q psy14534 238 HSGLQLISLGR 248 (423)
Q Consensus 238 ~sGvY~I~p~~ 248 (423)
.+|.|...|.+
T Consensus 208 G~g~~~l~p~G 218 (501)
T 1wle_A 208 GHRSYYLRGAG 218 (501)
T ss_dssp CTTCCEEETHH
T ss_pred cCceEEEcChH
Confidence 35666666643
No 213
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=20.39 E-value=2.6e+02 Score=22.30 Aligned_cols=31 Identities=19% Similarity=0.211 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhHHHHHHhhc
Q psy14534 36 MKTLQAINEEILQRISHLETSSQTNVKTLFN 66 (423)
Q Consensus 36 ~~~l~~~~~~~~~r~~~~e~~~~~l~~~~~n 66 (423)
...|++.+..+..+|..|+.+...|...+..
T Consensus 45 ~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~ 75 (87)
T 1hjb_A 45 VLELTAENERLQKKVEQLSRELSTLRNLFKQ 75 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555555544443
No 214
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=20.30 E-value=4.2e+02 Score=22.91 Aligned_cols=43 Identities=19% Similarity=0.180 Sum_probs=27.0
Q ss_pred chhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHhhh
Q psy14534 99 LPTIQREISKLEFGVAQINSTLQVVNETRESDANYLKSTVSTL 141 (423)
Q Consensus 99 ip~~~~EI~e~e~~l~q~ts~l~~~~Ee~~n~s~~i~s~~~si 141 (423)
+-.+..++...++-+...-+....+.++++.+...|+++-.+-
T Consensus 82 l~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsLE~~e 124 (147)
T 2b9c_A 82 LVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEDKV 124 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhH
Confidence 3344555555555555666666777777777777777766554
No 215
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=20.11 E-value=2.7e+02 Score=21.68 Aligned_cols=22 Identities=14% Similarity=0.122 Sum_probs=10.7
Q ss_pred HHHHHhhHHHHHHHHHHHHHHH
Q psy14534 18 FLKTKHHLEKEQHVINHKMKTL 39 (423)
Q Consensus 18 ~~~~~~~le~~~~~~~~~~~~l 39 (423)
+.++|..||-+.....+-+.+|
T Consensus 12 le~Ri~~LE~klAfqE~tIeeL 33 (78)
T 3efg_A 12 LEARLVELETRLSFQEQALTEL 33 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555554444444444
No 216
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=20.00 E-value=93 Score=31.55 Aligned_cols=55 Identities=7% Similarity=0.076 Sum_probs=34.0
Q ss_pred CCCcccchhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHH
Q psy14534 8 PDPRYRNGKLFLKTKHHLEKEQHVINHKMKTLQAINEEILQRISHLETSSQTNVK 62 (423)
Q Consensus 8 ~~~~~r~~~~~~~~~~~le~~~~~~~~~~~~l~~~~~~~~~r~~~~e~~~~~l~~ 62 (423)
..|...-..++.++|+++|.....+.+.+..|+.....+.++++.++.+...|+.
T Consensus 13 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~e~~~l~~ 67 (405)
T 4b4t_J 13 ETHESGIKPYFEQKIQETELKIRSKTENVRRLEAQRNALNDKVRFIKDELRLLQE 67 (405)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3455556677788899999888888777778877777777777777777666553
Done!