RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14534
(423 letters)
>2j5z_A Ficolin-3; hydroxylation, alternative splicing, lectin, collagen,
immunology, glycoprotein; HET: GAL; 1.73A {Homo sapiens}
PDB: 2j60_A* 2j64_A
Length = 221
Score = 251 bits (643), Expect = 2e-82
Identities = 71/213 (33%), Positives = 103/213 (48%), Gaps = 25/213 (11%)
Query: 230 KLPNDCE-----GH--SGLQLISLGRS----VLCDEHH----WMTIQRRYNGMQEFNLKW 274
+ P +C G SG + L V CD W+ QRR +G +F W
Sbjct: 10 EGPRNCRELLSQGATLSGWYHLCLPEGRALPVFCDMDTEGGGWLVFQRRQDGSVDFFRSW 69
Query: 275 TDYAQGFGSPESEFWIGNDALHRLTSQDNMSLRIEFVDIYGKAWYAEYDTFSVASESEGY 334
+ Y GFG+ ESEFW+GN+ LH+LT Q N LR+E D G +A Y TF + E + Y
Sbjct: 70 SSYRAGFGNQESEFWLGNENLHQLTLQGNWELRVELEDFNGNRTFAHYATFRLLGEVDHY 129
Query: 335 RLNLSGY-HGNASDAMTYQNNMKFSTIDRDNDLSNTHCASNYEGGWWFSHCLHANLNGK- 392
+L L + G A D+++ + F+T D D+D SN++CA G WW++ C +NLNG+
Sbjct: 130 QLALGKFSEGTAGDSLSLHSGRPFTTYDADHDSSNSNCAVIVHGAWWYASCYRSNLNGRY 189
Query: 393 -------FNLGLTWFHSEKNEWMAVARSHMKIR 418
G+ W + R M +R
Sbjct: 190 AVSEAAAHKYGIDWASG-RGVGHPYRRVRMMLR 221
>2d39_A Ficolin-1; innate immunity system, lectin pathway, immune system;
1.90A {Homo sapiens}
Length = 237
Score = 249 bits (639), Expect = 1e-81
Identities = 79/213 (37%), Positives = 116/213 (54%), Gaps = 25/213 (11%)
Query: 230 KLPNDCE-----GH--SGLQLISLGRS----VLCDEHH----WMTIQRRYNGMQEFNLKW 274
+ P +C+ G+ SG I L VLCD W QRR +G +F W
Sbjct: 1 EFPRNCKDLLDRGYFLSGWHTIYLPDCRPLTVLCDMDTDGGGWTVFQRRMDGSVDFYRDW 60
Query: 275 TDYAQGFGSPESEFWIGNDALHRLTSQDNMSLRIEFVDIYGKAWYAEYDTFSVASESEGY 334
Y QGFGS EFW+GND +H LT+Q + LR++ VD G +A+Y +F VA E+E Y
Sbjct: 61 AAYKQGFGSQLGEFWLGNDNIHALTAQGSSELRVDLVDFEGNHQFAKYKSFKVADEAEKY 120
Query: 335 RLNLSGY-HGNASDAMTYQNNMKFSTIDRDNDLSNTHCASNYEGGWWFSHCLHANLNGK- 392
+L L + G+A +++T NN FST D+DND+S+++CA ++G WW++ C +NLNG
Sbjct: 121 KLVLGAFVGGSAGNSLTGHNNNFFSTKDQDNDVSSSNCAEKFQGAWWYADCHASNLNGLY 180
Query: 393 -------FNLGLTWFHSEKNEWMAVARSHMKIR 418
+ G+ W + K + S MK+R
Sbjct: 181 LMGPHESYANGINWSAA-KGYKYSYKVSEMKVR 212
>2wnp_F Ficolin-1; glycoprotein, innate immunity, fibrinogen-like domain,
carbohydrate recognition, lectin, immune system; 1.21A
{Homo sapiens} PDB: 2jhm_F 2jhl_F* 2jhh_C 2jhk_F*
2jhi_F* 2j3o_A* 2j3f_A* 2j1g_A* 2j0h_A* 2j0g_A* 2j0y_A*
2j2p_A* 2j3g_A* 2j3u_A* 2j61_B* 2j3f_D* 2j61_A*
Length = 217
Score = 247 bits (634), Expect = 5e-81
Identities = 80/211 (37%), Positives = 115/211 (54%), Gaps = 25/211 (11%)
Query: 232 PNDCE-----GH--SGLQLISLGRS----VLCDEHH----WMTIQRRYNGMQEFNLKWTD 276
P +C+ G+ SG I L VLCD W QRR +G +F W
Sbjct: 6 PRNCKDLLDRGYFLSGWHTIYLPDCRPLTVLCDMDTDGGGWTVFQRRMDGSVDFYRDWAA 65
Query: 277 YAQGFGSPESEFWIGNDALHRLTSQDNMSLRIEFVDIYGKAWYAEYDTFSVASESEGYRL 336
Y QGFGS EFW+GND +H LT+Q + LR++ VD G +A+Y +F VA E+E Y+L
Sbjct: 66 YKQGFGSQLGEFWLGNDNIHALTAQGSSELRVDLVDFEGNHQFAKYKSFKVADEAEKYKL 125
Query: 337 NLSGY-HGNASDAMTYQNNMKFSTIDRDNDLSNTHCASNYEGGWWFSHCLHANLNGK--- 392
L + G+A +++T NN FST D+DND+S+++CA ++G WW++ C +NLNG
Sbjct: 126 VLGAFVGGSAGNSLTGHNNNFFSTKDQDNDVSSSNCAEKFQGAWWYADCHASNLNGLYLM 185
Query: 393 -----FNLGLTWFHSEKNEWMAVARSHMKIR 418
F G+ W + K + S MK+R
Sbjct: 186 GPHESFANGINWSAA-KGYKYSYKVSEMKVR 215
>1jc9_A Techylectin-5A; fibrinogen related, sugar binding protein; HET:
NAG; 2.01A {Tachypleus tridentatus} SCOP: d.171.1.1
Length = 269
Score = 242 bits (620), Expect = 2e-78
Identities = 81/260 (31%), Positives = 117/260 (45%), Gaps = 32/260 (12%)
Query: 190 NGRSEGLSLSSQLDDSKNLSPETIMQQMNKIHDSYLQ--VVGKLPNDCE-----GH--SG 240
N ++ S+ L DS + + +Q+ S + +V P DC G+ SG
Sbjct: 2 NKELCDVTSSTGLLDSIKVMASHVKEQLKDKGTSEVAQPIVSPDPTDCADILLNGYRSSG 61
Query: 241 LQLISLGR-------SVLCDEHH----WMTIQRRYN---GMQEFNLKWTDYAQGFGSPES 286
I +V CD W IQRR N F W +Y GFG+ E
Sbjct: 62 GYRIWPKSWMTVGTLNVYCDMETDGGGWTVIQRRGNYGNPSDYFYKPWKNYKLGFGNIEK 121
Query: 287 EFWIGNDALHRLTSQDNMSLRIEFVDIYGKAWYAEYDTFSVASESEGYRLNLSGYHGNAS 346
+FW+GND + LT+Q N +R + D YA Y F + +E Y L++ Y G+A
Sbjct: 122 DFWLGNDRIFALTNQRNYMIRFDLKDKENDTRYAIYQDFWIENEDYLYCLHIGNYSGDAG 181
Query: 347 DAMTYQNNMKFSTIDRDNDLSNTHCASNYEGGWWFSHCLHANLNGK--------FNLGLT 398
++ N FSTID+D+D THCA Y+GGWW+ C +NLNG + G+
Sbjct: 182 NSFGRHNGHNFSTIDKDHDTHETHCAQTYKGGWWYDRCHESNLNGLYLNGEHNSYADGIE 241
Query: 399 WFHSEKNEWMAVARSHMKIR 418
W K ++ + MKIR
Sbjct: 242 WRAW-KGYHYSLPQVEMKIR 260
>1z3u_A Angiopoietin-2, ANG-2; TIE2 binding, angiogenesis, extracellular
ligand, signaling protein; 2.25A {Homo sapiens} PDB:
1z3s_A 2gy7_A*
Length = 217
Score = 238 bits (609), Expect = 2e-77
Identities = 62/186 (33%), Positives = 86/186 (46%), Gaps = 15/186 (8%)
Query: 249 SVLCDEHH----WMTIQRRYNGMQEFNLKWTDYAQGFGSPESEFWIGNDALHRLTSQDNM 304
CD W IQRR +G +F W +Y GFG+P E+W+GN+ + +LT+Q
Sbjct: 31 KAYCDMEAGGGGWTIIQRREDGSVDFQRTWKEYKVGFGNPSGEYWLGNEFVSQLTNQQRY 90
Query: 305 SLRIEFVDIYGKAWYAEYDTFSVASESEGYRLNLSGYHGNASDAM-TYQNNMKFSTIDRD 363
L+I D G Y+ Y+ F ++SE YR++L G G A Q FST D D
Sbjct: 91 VLKIHLKDWEGNEAYSLYEHFYLSSEELNYRIHLKGLTGTAGKISSISQPGNDFSTKDGD 150
Query: 364 NDLSNTHCASNYEGGWWFSHCLHANLNGKFNL---------GLTWFHSEKNEWMAVARSH 414
ND C+ GGWWF C +NLNG + G+ W K ++ +
Sbjct: 151 NDKCICKCSQMLTGGWWFDACGPSNLNGMYYPQRQNTNKANGIKWAAW-KGSGYSLKATT 209
Query: 415 MKIRRR 420
M IR
Sbjct: 210 MMIRPA 215
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets,
alpha helices, AMY amyloidosis, blood coagulation,
disease mutation, glycoprot phosphoprotein; HET: NAG NDG
BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Length = 411
Score = 240 bits (613), Expect = 2e-75
Identities = 87/387 (22%), Positives = 158/387 (40%), Gaps = 74/387 (19%)
Query: 83 ELLESIETIENKVDYNLPTIQREISKLEFGVAQINSTLQVVNETRESDANYLKSTVSTLA 142
+ + + T + KVD +L +++ + ++E +++ ++ + T D + + +
Sbjct: 24 GIADFLSTYQTKVDKDLQSLEDILHQVENKTSEVKQLIKAIQLTYNPDESSKPNMIDAAT 83
Query: 143 TLQEKVEANNIIMQALSDANYLKSTVSTLATLQEKVEANNIIMQALRNGRSEGLSLSSQL 202
K+ + +A + + S++ LQE +NN + L+ ++
Sbjct: 84 LKSRKMLEEIMKYEAS-----ILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQ-------- 130
Query: 203 DDSKNLSPETIMQQMNKIHDSYLQVVGKLPNDC-------EGHSGLQLISLGRS-----V 250
+ Q + +Q+ DC SGL I ++ V
Sbjct: 131 ----------LEAQCQEPCKDTVQIHDITGKDCQDIANKGAKQSGLYFIKPLKANQQFLV 180
Query: 251 LCDEHH----WMTIQRRYNGMQEFNLKWTDYAQGFGS----PESEFWIGNDALHRLTSQD 302
C+ W Q+R +G +F W Y +GFG +EFW+GN+ +H +++Q
Sbjct: 181 YCEIDGSGNGWTVFQKRLDGSVDFKKNWIQYKEGFGHLSPTGTTEFWLGNEKIHLISTQS 240
Query: 303 NM--SLRIEFVDIYGKAWYAEYDTFSVASESEGYRLNLSGYH-GNASDA----------- 348
+ +LR+E D G+ A+Y F V E++ YRL + + G+A DA
Sbjct: 241 AIPYALRVELEDWNGRTSTADYAMFKVGPEADKYRLTYAYFAGGDAGDAFDGFDFGDDPS 300
Query: 349 ---MTYQNNMKFSTIDRDNDLSNTHCASNYEGGWWFSHCLHANLNGKFNLGLTWFHSE-- 403
T N M+FST D DND +CA GWW + C +LNG + G T+ +
Sbjct: 301 DKFFTSHNGMQFSTWDNDNDKFEGNCAEQDGSGWWMNKCHAGHLNGVYYQGGTYSKASTP 360
Query: 404 ------------KNEWMAVARSHMKIR 418
K W ++ ++ MKI
Sbjct: 361 NGYDNGIIWATWKTRWYSMKKTTMKII 387
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen,
blood clotting; HET: NDG NAG; 2.70A {Gallus gallus}
SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Length = 409
Score = 233 bits (596), Expect = 6e-73
Identities = 79/370 (21%), Positives = 133/370 (35%), Gaps = 56/370 (15%)
Query: 102 IQREISKLEFGVAQINSTLQVVNETRESDANYLKSTVSTLATLQEKVEANNIIMQALSDA 161
I +K L + + N S + ++ + +
Sbjct: 25 IADFFNKYRLTTDGE---LLEIEGLLQQATNSTGSIEYLIQHIKTIYPSEKQTLP--QSI 79
Query: 162 NYLKSTVSTLATLQEKVEANNIIMQALRNGRSEGLSLSSQLDDSKNLSPETIMQQMNKIH 221
L + + E + + ++ ++S + +
Sbjct: 80 EQLTQKSKKIIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQLESHCQEPC 139
Query: 222 DSYLQVVGKLPNDC-------EGHSGLQLISLGRS-----VLCDEHH----WMTIQRRYN 265
++ DC SGL I ++ V C+ W +QRR +
Sbjct: 140 KDTAEIQETTGRDCQDIANKGARKSGLYFIKPQKAKQSFLVYCEIDTYGNGWTVLQRRLD 199
Query: 266 GMQEFNLKWTDYAQGFGS----PESEFWIGNDALHRLTSQDNM--SLRIEFVDIYGKAWY 319
G ++F W Y +GFG +EFW+GN+ +H +T+Q + +LRIE D GK
Sbjct: 200 GSEDFRRNWVQYKEGFGHLSPDDTTEFWLGNEKIHLITTQSTLPYALRIELEDWSGKKGT 259
Query: 320 AEYDTFSVASESEGYRLNLSGY-HGNASDA--------------MTYQNNMKFSTIDRDN 364
A+Y F V +E + YRL + + G A DA TY N M+FST D DN
Sbjct: 260 ADYAVFKVGTEEDKYRLTYAYFIGGEAGDAFDGFNFGDDPSDKSYTYHNGMRFSTFDNDN 319
Query: 365 DLSNTHCASNYEGGWWFSHCLHANLNGKFNLGLTWFHSE--------------KNEWMAV 410
D +CA GWW + C +LNG + +G + ++ W ++
Sbjct: 320 DNFEGNCAEQDGSGWWMNRCHAGHLNGPYYIGGVYSRDTGTNSYDNGIIWATWRDRWYSM 379
Query: 411 ARSHMKIRRR 420
++ MKI
Sbjct: 380 KKTTMKIIPF 389
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex,
blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A
{Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB:
1n73_C*
Length = 323
Score = 227 bits (580), Expect = 1e-71
Identities = 76/306 (24%), Positives = 122/306 (39%), Gaps = 52/306 (16%)
Query: 162 NYLKSTVSTLATLQEKVEANNIIMQALRNGRSEGLSLSSQLDDSKNLSPETIMQQMNKIH 221
++ + + L++ +++ +Q L ++L +T +
Sbjct: 5 KTVQKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQTCSRPCQDTT 64
Query: 222 DSYLQVVGKLPNDCE-----GH--SGLQLISLGRS-----VLCD---EHHWMTIQRRYNG 266
+ + + DC+ G SGL I ++ V C+ + W IQ R++G
Sbjct: 65 ANKISPIT--GKDCQQVVDNGGKDSGLYYIKPLKAKQPFLVFCEIENGNGWTVIQHRHDG 122
Query: 267 MQEFNLKWTDYAQGFG----SPESEFWIGNDALHRLTSQDNMSLRIEFVDIYGKAWYAEY 322
F W Y +GFG + +EFW+GN+ +H LT Q LRI+ D YA+Y
Sbjct: 123 SVNFTRDWVSYREGFGYLAPTLTTEFWLGNEKIHLLTGQQAYRLRIDLTDWENTHRYADY 182
Query: 323 DTFSVASESEGYRLNLSGY-HGNASDAM--------------TYQNNMKFSTIDRDNDLS 367
F + ES+ YRL S Y G+A +A T M FST +RDND
Sbjct: 183 GHFKLTPESDEYRLFYSMYLDGDAGNAFDGFDFGDDPQDKFYTTHLGMLFSTPERDNDKY 242
Query: 368 NTHCASNYEGGWWFSHCLHANLNGKFNL---------------GLTWFHSEKNEWMAVAR 412
CA GWW + C +LNGK+ G+ W + W ++
Sbjct: 243 EGSCAEQDGSGWWMNRCHAGHLNGKYYFGGNYRKTDVEFPYDDGIIWATW-HDRWYSLKM 301
Query: 413 SHMKIR 418
+ MK+
Sbjct: 302 TTMKLL 307
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG
MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB:
1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C
3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C*
2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Length = 319
Score = 224 bits (572), Expect = 1e-70
Identities = 73/302 (24%), Positives = 124/302 (41%), Gaps = 55/302 (18%)
Query: 168 VSTLATLQEKVEANNIIMQALRNGRSEGLSLSSQLDDSKNLSPETIMQQMNKIHDSYLQV 227
+ + + + ++ ++ L+ + L + + Q + +Q+
Sbjct: 3 LEEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVA----QLEAQCQEPCKDTVQI 58
Query: 228 VGKLPNDCE-----GH--SGLQLISLGRS-----VLCDEHH----WMTIQRRYNGMQEFN 271
DC+ G SGL I ++ V C+ W Q+R +G +F
Sbjct: 59 HDITGKDCQDIANKGAKQSGLYFIKPLKANQQFLVYCEIDGSGNGWTVFQKRLDGSVDFK 118
Query: 272 LKWTDYAQGFGS----PESEFWIGNDALHRLTSQDNM--SLRIEFVDIYGKAWYAEYDTF 325
W Y +GFG +EFW+GN+ +H +++Q + +LR+E D G+ A+Y F
Sbjct: 119 KNWIQYKEGFGHLSPTGTTEFWLGNEKIHLISTQSAIPYALRVELEDWNGRTSTADYAMF 178
Query: 326 SVASESEGYRLNLSGYH-GNASDA--------------MTYQNNMKFSTIDRDNDLSNTH 370
V E++ YRL + + G+A DA T N M+FST D DND +
Sbjct: 179 KVGPEADKYRLTYAYFAGGDAGDAFDGFDFGDDPSDKFFTSHNGMQFSTWDNDNDKFEGN 238
Query: 371 CASNYEGGWWFSHCLHANLNGKFNLGLTWFHSE--------------KNEWMAVARSHMK 416
CA GWW + C +LNG + G T+ + K W ++ ++ MK
Sbjct: 239 CAEQDGSGWWMNKCHAGHLNGVYYQGGTYSKASTPNGYDNGIIWATWKTRWYSMKKTTMK 298
Query: 417 IR 418
I
Sbjct: 299 II 300
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets,
alpha helices, AMY amyloidosis, blood coagulation,
disease mutation, glycoprot phosphoprotein; HET: NAG NDG
BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B*
1deq_B 2a45_H*
Length = 461
Score = 228 bits (583), Expect = 2e-70
Identities = 91/380 (23%), Positives = 148/380 (38%), Gaps = 71/380 (18%)
Query: 101 TIQREISKLEFGVAQINSTLQVVNETRESDANYLKSTVSTLATLQEKVEANNIIMQALSD 160
+ ++ + V ++N+ ++ V++T S Y+ Q++V+ N ++ S
Sbjct: 85 ALLQQERPIRNSVDELNNNVEAVSQTSSSSFQYMYLLKDLWQKRQKQVKDNENVVNEYSS 144
Query: 161 ANYLKSTVSTLATLQEKVEANNIIMQALRNGRSEGLSLSSQLDDSKNLSPETIMQQMNKI 220
L+ + N+ + LR+ S +L+ + M+
Sbjct: 145 E--LEKHQLYIDETVNSNIPTNL--RVLRSILENLRSKIQKLESDVS----AQMEYCRTP 196
Query: 221 HDSYLQVVGKLPNDCE-----GH--SGLQLISLGRS-----VLCD----EHHWMTIQRRY 264
+ +CE G S + LI S V CD W IQ R
Sbjct: 197 CTVSCNIPVVSGKECEEIIRKGGETSEMYLIQPDSSVKPYRVYCDMNTENGGWTVIQNRQ 256
Query: 265 NGMQEFNLKWTDYAQGFGSPES------------EFWIGNDALHRLTSQDNMSLRIEFVD 312
+G +F KW Y QGFG+ + E+W+GND + +LT L IE D
Sbjct: 257 DGSVDFGRKWDPYKQGFGNVATNTDGKNYCGLPGEYWLGNDKISQLTRMGPTELLIEMED 316
Query: 313 IYGKAWYAEYDTFSVASESEGYRLNLSGYHGNASDAM--------------TYQNNMKFS 358
G A Y F+V +E+ Y+++++ Y G A +A+ T N M FS
Sbjct: 317 WKGDKVKAHYGGFTVQNEANKYQISVNKYRGTAGNALMDGASQLMGENRTMTIHNGMFFS 376
Query: 359 TIDRDNDL-----SNTHCASNYEGGWWFSHCLHANLNGKFNL---------------GLT 398
T DRDND C+ GGWW++ C AN NG++ G+
Sbjct: 377 TYDRDNDGWLTSDPRKQCSKEDGGGWWYNRCHAANPNGRYYWGGQYTWDMAKHGTDDGVV 436
Query: 399 WFHSEKNEWMAVARSHMKIR 418
W + K W ++ + MKIR
Sbjct: 437 WMNW-KGSWYSMRKMSMKIR 455
>2fib_A Fibrinogen; fibrinogen, blood coagulation, fibrin polymerization,
complex (blood coagulation/peptide); 2.01A {Homo
sapiens} SCOP: d.171.1.1 PDB: 1fic_A 1fid_A 1fib_A
3fib_A
Length = 269
Score = 220 bits (562), Expect = 1e-69
Identities = 70/246 (28%), Positives = 108/246 (43%), Gaps = 53/246 (21%)
Query: 225 LQVVGKLPNDCE-----GH--SGLQLISLGRS-----VLCDEHH----WMTIQRRYNGMQ 268
+Q+ DC+ G SGL I ++ V C+ W Q+R +G
Sbjct: 1 VQIHDITGKDCQDIANKGAKQSGLYFIKPLKANQQFLVYCEIDGSGNGWTVFQKRLDGSV 60
Query: 269 EFNLKWTDYAQGFGS----PESEFWIGNDALHRLTSQDNM--SLRIEFVDIYGKAWYAEY 322
+F W Y +GFG +EFW+GN+ +H +++Q + +LR+E D G+ A+Y
Sbjct: 61 DFKKNWIQYKEGFGHLSPTGTTEFWLGNEKIHLISTQSAIPYALRVELEDWNGRTSTADY 120
Query: 323 DTFSVASESEGYRLNLSGYH-GNASDA--------------MTYQNNMKFSTIDRDNDLS 367
F V E++ YRL + + G+A DA T N M+FST D DND
Sbjct: 121 AMFKVGPEADKYRLTYAYFAGGDAGDAFDGFDFGDDPSDKFFTSHNGMQFSTWDNDNDKF 180
Query: 368 NTHCASNYEGGWWFSHCLHANLNGK---------------FNLGLTWFHSEKNEWMAVAR 412
+CA GWW + C +LNG ++ G+ W K W ++ +
Sbjct: 181 EGNCAEQDGSGWWMNKCHAGHLNGVYYQGGTYSKASTPNGYDNGIIWATW-KTRWYSMKK 239
Query: 413 SHMKIR 418
+ MKI
Sbjct: 240 TTMKII 245
>1fzd_A Fibrinogen-420; blood coagulation, alphaec domain, fibrinoge
domain, glycosylated protein; HET: NAG MAN NDG; 2.10A
{Homo sapiens} SCOP: d.171.1.1
Length = 201
Score = 215 bits (549), Expect = 1e-68
Identities = 78/193 (40%), Positives = 99/193 (51%), Gaps = 34/193 (17%)
Query: 257 WMTIQRRYNGMQEFNLKWTDYAQGFGS----PESEFWIGNDALHRLTSQDNMSLRIEFVD 312
W+ IQ+R +G FN W DY +GFGS E EFW+GND LH LT + ++ LR+E D
Sbjct: 7 WLLIQQRMDGSLNFNRTWQDYKRGFGSLNDEGEGEFWLGNDYLHLLTQRGSV-LRVELED 65
Query: 313 IYGKAWYAEYDTFSVASESEGYRLNLSGYHGNASDAM-----------TYQNNMKFSTID 361
G YAEY F V SE+EGY L +S Y G A DA+ T NNM+FST D
Sbjct: 66 WAGNEAYAEYH-FRVGSEAEGYALQVSSYEGTAGDALIEGSVEEGAEYTSHNNMQFSTFD 124
Query: 362 RDNDLSNTHCASNYEGGWWFSHCLHANLNGK----------------FNLGLTWFHSEKN 405
RD D +CA Y GGWW+++C ANLNG G+ W +
Sbjct: 125 RDADQWEENCAEVYGGGWWYNNCQAANLNGIYYPGGSYDPRNNSPYEIENGVVWVSF-RG 183
Query: 406 EWMAVARSHMKIR 418
++ MKIR
Sbjct: 184 ADYSLRAVRMKIR 196
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen,
blood clotting; HET: NDG NAG; 2.70A {Gallus gallus}
SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Length = 464
Score = 223 bits (570), Expect = 2e-68
Identities = 88/400 (22%), Positives = 147/400 (36%), Gaps = 84/400 (21%)
Query: 80 SMMELLESIETIENKVDYNLPTIQREISKLEFGVAQINSTLQVVNETRESDANYLKSTVS 139
+ EL ++ E V L ++ ++K + + +++ K
Sbjct: 83 TGCELQTTLLKQEKTVKPVLRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQRKDNDI 142
Query: 140 TLATLQEKVEANNIIMQALSDANYLKSTVSTLATLQEKVEANNIIMQALRNGRSEGLSLS 199
L+ ++E + ++ D N S+L L+ +++ + +Q L N +
Sbjct: 143 ILSEYNTEMELHYNYIKDNLDNN----IPSSLRVLRAVIDSLHKKIQKLENAIA------ 192
Query: 200 SQLDDSKNLSPETIMQQMNKIHDSYLQVVGKLPNDCE-----GH--SGLQLISLGRS--- 249
T + + +CE G S + +I
Sbjct: 193 ------------TQTDYCRSPCVASCNIPVVSGRECEDIYRKGGETSEMYIIQPDPFTTP 240
Query: 250 --VLCDEHH----WMTIQRRYNGMQEFNLKWTDYAQGFGS-----------PESEFWIGN 292
V CD W IQ R +G F W +Y +GFG+ E+W+GN
Sbjct: 241 YRVYCDMETDNGGWTLIQNRQDGSVNFGRAWDEYKRGFGNIAKSGGKKYCDTPGEYWLGN 300
Query: 293 DALHRLTSQDNMSLRIEFVDIYGKAWYAEYDTFSVASESEGYRLNLSGYHGNASDAM--- 349
D + +LT + IE D G A Y F++ +E Y+L++S Y GNA +A+
Sbjct: 301 DKISQLTKIGPTKVLIEMEDWNGDKVSALYGGFTIHNEGNKYQLSVSNYKGNAGNALMEG 360
Query: 350 -----------TYQNNMKFSTIDRDNDL-----SNTHCASNYEGGWWFSHCLHANLNGKF 393
T N M FST DRDND C+ GGWW++ C AN NG++
Sbjct: 361 ASQLYGENRTMTIHNGMYFSTYDRDNDGWLTTDPRKQCSKEDGGGWWYNRCHAANPNGRY 420
Query: 394 NL---------------GLTWFHSEKNEWMAVARSHMKIR 418
G+ W + K W ++ + MKI+
Sbjct: 421 YWGGTYSWDMAKHGTDDGIVWMNW-KGSWYSMKKMSMKIK 459
>1lwu_B Fibrinogen beta chain; heterotrimer, protein-peptide complex, blood
clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon
marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_B*
Length = 323
Score = 218 bits (556), Expect = 4e-68
Identities = 78/320 (24%), Positives = 126/320 (39%), Gaps = 65/320 (20%)
Query: 162 NYLKSTVSTLATLQEKVEANNIIMQALRNGRSEGLSLSSQLDDSKNLSPETIMQQMNKIH 221
N K + ++ ++E + + +LR+ +S L +++ + T + +
Sbjct: 6 NAQKEIENRYKEVKIRIE--STVAGSLRSMKSVLEHLRAKMQRMEEAIK-TQKELCSAPC 62
Query: 222 DSYLQVVGKLPNDCE-----GH--SGLQLISLGRS-----VLCDEHH----WMTIQRRYN 265
+V CE G S I V CD W +Q R +
Sbjct: 63 TVNCRVPVVSGMHCEDIYRNGGRTSEAYYIQPDLFSEPYKVFCDMESHGGGWTVVQNRVD 122
Query: 266 GMQEFNLKWTDYAQGFGSPES-----------EFWIGNDALHRLTSQDNMSLRIEFVDIY 314
G F W Y FG+ E+W+G +H+LT Q + + D
Sbjct: 123 GSSNFARDWNTYKAEFGNIAFGNGKSICNIPGEYWLGTKTVHQLTKQHTQQVLFDMSDWE 182
Query: 315 GKAWYAEYDTFSVASESEGYRLNLSGYHGNASDAM--------------TYQNNMKFSTI 360
G + YA+Y +F +E++GYRL + Y GNA +A+ T N M+FST
Sbjct: 183 GSSVYAQYASFRPENEAQGYRLWVEDYSGNAGNALLEGATQLMGDNRTMTIHNGMQFSTF 242
Query: 361 DRDNDL-----SNTHCASNYEGGWWFSHCLHANLNGK---------------FNLGLTWF 400
DRDND HC+ GGWW++ C AN NG+ + G+ W
Sbjct: 243 DRDNDNWNPGDPTKHCSREDAGGWWYNRCHAANPNGRYYWGGIYTKEQADYGTDDGVVWM 302
Query: 401 HSEKNEWMAVARSHMKIRRR 420
+ K W ++ + MK+R +
Sbjct: 303 NW-KGSWYSMRQMAMKLRPK 321
>1fzc_B Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG
MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB:
1fzb_B* 1fza_B* 1fze_B* 1fzf_B* 1fzg_B* 1n86_B* 1n8e_B
2h43_B* 2hlo_B* 2hod_B* 2hpc_B* 2q9i_B* 2xnx_B 2xny_B
3e1i_B* 2z4e_B* 2oyh_B* 1ltj_B* 1rf0_B* 1lt9_B* ...
Length = 328
Score = 212 bits (540), Expect = 1e-65
Identities = 86/323 (26%), Positives = 131/323 (40%), Gaps = 70/323 (21%)
Query: 164 LKSTVSTLATLQEKVEA------NNIIMQALRNGRSEGLSLSSQLDDSKNLSPETIMQQM 217
++ V+ ++ EK + N+ I LR RS +L S++ ++ M+
Sbjct: 2 NENVVNEYSSELEKHQLYIDETVNSNIPTNLRVLRSILENLRSKIQKLES-DVSAQMEYC 60
Query: 218 NKIHDSYLQVVGKLPNDCE-----GH--SGLQLISLGRS-----VLCDEHH----WMTIQ 261
+ +CE G S + LI S V CD + W IQ
Sbjct: 61 RTPCTVSCNIPVVSGKECEEIIRKGGETSEMYLIQPDSSVKPYRVYCDMNTENGGWTVIQ 120
Query: 262 RRYNGMQEFNLKWTDYAQGFGSPES------------EFWIGNDALHRLTSQDNMSLRIE 309
R +G +F KW Y QGFG+ + E+W+GND + +LT L IE
Sbjct: 121 NRQDGSVDFGRKWDPYKQGFGNVATNTDGKNYCGLPGEYWLGNDKISQLTRMGPTELLIE 180
Query: 310 FVDIYGKAWYAEYDTFSVASESEGYRLNLSGYHGNASDAM--------------TYQNNM 355
D G A Y F+V +E+ Y+++++ Y G A +A+ T N M
Sbjct: 181 MEDWKGDKVKAHYGGFTVQNEANKYQISVNKYRGTAGNALMDGASQLMGENRTMTIHNGM 240
Query: 356 KFSTIDRDNDL-----SNTHCASNYEGGWWFSHCLHANLNGK---------------FNL 395
FST DRDND C+ GGWW++ C AN NG+ +
Sbjct: 241 FFSTYDRDNDGWLTSDPRKQCSKEDGGGWWYNRCHAANPNGRYYWGGQYTWDMAKHGTDD 300
Query: 396 GLTWFHSEKNEWMAVARSHMKIR 418
G+ W + K W ++ + MKIR
Sbjct: 301 GVVWMNW-KGSWYSMRKMSMKIR 322
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 62.6 bits (151), Expect = 1e-10
Identities = 63/476 (13%), Positives = 135/476 (28%), Gaps = 144/476 (30%)
Query: 1 NSIEPILPDPRYRNGKLFLKTKHHLEK---EQHVINHKM----KTLQAINEEILQRISHL 53
N + R + +LK + L + ++V+ + KT A L
Sbjct: 121 NDNQVFAKYNVSR-LQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVA-----------L 168
Query: 54 ETSSQTNVKTLFN-----ITKQISGVEHLHSSMMELLESIETIENKVDYNLPTIQREISK 108
+ V+ + + +++ +S +LE ++ + ++D N + S
Sbjct: 169 DVCLSYKVQCKMDFKIFWLN-----LKNCNSPE-TVLEMLQKLLYQIDPNWTSRSDHSSN 222
Query: 109 LEFGVAQINSTLQVVNETRESDANYLKST--VSTLATLQEKVEANNIIMQALSDANYLKS 166
++ ++ + LKS + L +++ + +A +
Sbjct: 223 IK----------LRIHSIQAELRRLLKSKPYENCL-----------LVLLNVQNAKAWNA 261
Query: 167 ---TVSTLATLQEKVEANNIIMQALRNGRSEGLSLSSQLDDSKNLSPETIMQQMNKIHDS 223
+ L T + K + L + +SL S L+P+ + + K
Sbjct: 262 FNLSCKILLTTRFKQ-----VTDFLSAATTTHISLD---HHSMTLTPDEVKSLLLK---- 309
Query: 224 YLQV-VGKLPND-CEGHSGLQLISL-GRSVLCDEHHWMTIQRRYNGMQEFNLKWTDYAQG 280
YL LP + + + +S+ S +++ W ++
Sbjct: 310 YLDCRPQDLPREVLTTN--PRRLSIIAES-----------------IRDGLATWDNWKH- 349
Query: 281 FGSPESEFWIGNDALHR-----LTSQDNMSLRIEF---------VDI----YGKAWYA-- 320
+ D L L + R F I W+
Sbjct: 350 ---------VNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI 400
Query: 321 EYDTFSVASESEGYRL-------NLSGYHGNASDAMTYQNNMKF---STIDRDN---DLS 367
+ D V ++ Y L + + N S +D N
Sbjct: 401 KSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFD 460
Query: 368 NTHCASNYEGGWWFSHCLH----ANLNGKFNLGLTWFHSEKNEWMAVARSHMKIRR 419
+ Y +++SH H + L F + ++ KIR
Sbjct: 461 SDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFR--FLEQ-----KIRH 509
Score = 57.9 bits (139), Expect = 3e-09
Identities = 50/375 (13%), Positives = 103/375 (27%), Gaps = 112/375 (29%)
Query: 23 HHLEKEQHVINHKMKTLQAINEEILQRISHLETSSQT--------NV------------- 61
+ ++ + ++ I + L S NV
Sbjct: 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC 266
Query: 62 KTLF-----NITKQISGVEHLHSSMMELL------ESIETIENKVDYNLPTIQREISKLE 110
K L +T +S H S+ E + +D + RE+
Sbjct: 267 KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN 326
Query: 111 -FGVAQINSTLQVVNETRESDANYLKSTVSTLATLQEKVEANNIIMQALSDANYLKSTVS 169
++ I +++ T + N+ L T+ E + L + +
Sbjct: 327 PRRLSIIAESIRDGLATWD---NWKHVNCDKLTTIIES------SLNVL-EPAEYRKMFD 376
Query: 170 TLATLQEKVEANNIIMQALRNGRSEGLSLSSQL-DDSKNLSPETIMQQMNK--------- 219
L+ +I L S + D ++ +++K
Sbjct: 377 RLSVFPPSA---HIPTILL-----------SLIWFDVIKSDVMVVVNKLHKYSLVEKQPK 422
Query: 220 -----IHDSYLQVVGKLPNDCEGHSGLQLISLGRSVLCDEHHWMTIQRRYNGMQEFNLKW 274
I YL++ KL N+ H RS++ +H+ I + ++
Sbjct: 423 ESTISIPSIYLELKVKLENEYALH---------RSIV--DHY--NIPKTFDSDDLIPPYL 469
Query: 275 TDYAQGFGSPESEFW-IGNDALHRLTSQDNMSLRIEFVDIY-------------GKAWYA 320
Y F + IG H L + ++ F ++ AW A
Sbjct: 470 DQY---F------YSHIG----HHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNA 516
Query: 321 EYDTFSVASESEGYR 335
+ + + Y+
Sbjct: 517 SGSILNTLQQLKFYK 531
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 39.8 bits (93), Expect = 0.001
Identities = 25/194 (12%), Positives = 71/194 (36%), Gaps = 12/194 (6%)
Query: 20 KTKHHLEKEQHVINHKMKTLQAINEEILQRISHLETSSQTNVKTLFNITKQISGVEHLHS 79
+ L+ E+ + K+K ++ + + + L + + + ++T ++ E
Sbjct: 969 AARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAK 1028
Query: 80 SMMELLESIETIENKVDYNLPT-------IQREISKLEFGVAQINSTLQVVNETRESDAN 132
++ +L E++ ++++ L +++ KLE + ++ + +
Sbjct: 1029 NLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKA 1088
Query: 133 YLKSTVSTLATLQEKVEANNIIMQALSDANYLKSTVSTLATLQEKVEANNIIMQALRNGR 192
L L ++E ++ S ++ LQE +E+ +
Sbjct: 1089 QLAKKEEELQAALARLEDETSQKNNALKK--IRELESHISDLQEDLESEKAARNKAEKQK 1146
Query: 193 SEGLSLSSQLDDSK 206
+ LS +L+ K
Sbjct: 1147 RD---LSEELEALK 1157
Score = 30.2 bits (68), Expect = 1.7
Identities = 30/118 (25%), Positives = 48/118 (40%), Gaps = 7/118 (5%)
Query: 20 KTKHHLEKEQHVINHKMKTLQAINEEILQRISHLETSSQTNVKTLF-------NITKQIS 72
K K LE E ++ ++ LQA E+ +++ E Q + L N K+I
Sbjct: 1060 KIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIR 1119
Query: 73 GVEHLHSSMMELLESIETIENKVDYNLPTIQREISKLEFGVAQINSTLQVVNETRESD 130
+E S + E LES + NK + + E+ L+ + T E R SD
Sbjct: 1120 ELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSD 1177
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.0 bits (74), Expect = 0.077
Identities = 7/47 (14%), Positives = 19/47 (40%), Gaps = 18/47 (38%)
Query: 103 QREISKLEFGVAQINSTLQVVNETRESDANYLKSTVSTLATLQEKVE 149
++ + KL+ ++L++ Y + LA ++ +E
Sbjct: 19 KQALKKLQ-------ASLKL----------YADDSAPALA-IKATME 47
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 32.4 bits (74), Expect = 0.38
Identities = 19/122 (15%), Positives = 46/122 (37%)
Query: 20 KTKHHLEKEQHVINHKMKTLQAINEEILQRISHLETSSQTNVKTLFNITKQISGVEHLHS 79
K LE + + K+ + +L+++++LE + T + L + +++ E
Sbjct: 921 KLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAK 980
Query: 80 SMMELLESIETIENKVDYNLPTIQREISKLEFGVAQINSTLQVVNETRESDANYLKSTVS 139
+ + S++ K+ L Q E +E + + + + LK+
Sbjct: 981 NATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKE 1040
Query: 140 TL 141
L
Sbjct: 1041 EL 1042
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1
PDB: 2tma_A 2w49_A 2w4u_A
Length = 284
Score = 29.6 bits (66), Expect = 1.6
Identities = 20/127 (15%), Positives = 39/127 (30%)
Query: 24 HLEKEQHVINHKMKTLQAINEEILQRISHLETSSQTNVKTLFNITKQISGVEHLHSSMME 83
LE E + K+K + ++ + + + + K + ++ + E
Sbjct: 38 QLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLFEE 97
Query: 84 LLESIETIENKVDYNLPTIQREISKLEFGVAQINSTLQVVNETRESDANYLKSTVSTLAT 143
L+ + L ++ + E G+ I S Q E E LK
Sbjct: 98 ELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAED 157
Query: 144 LQEKVEA 150
K E
Sbjct: 158 ADRKYEE 164
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA,
BHLHZ, heterodimer, transcription/DNA complex; 1.80A
{Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A
1nlw_B
Length = 83
Score = 27.7 bits (62), Expect = 1.9
Identities = 8/54 (14%), Positives = 20/54 (37%), Gaps = 3/54 (5%)
Query: 5 PILPDPRYRNGKLFLKTK---HHLEKEQHVINHKMKTLQAINEEILQRISHLET 55
P L + ++ K ++ ++ H + L+ N + Q++ L
Sbjct: 29 PSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRALGG 82
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ,
heterodimer, transcription/DNA complex; 1.80A {Homo
sapiens} SCOP: a.38.1.1
Length = 88
Score = 27.7 bits (62), Expect = 2.1
Identities = 4/33 (12%), Positives = 14/33 (42%)
Query: 23 HHLEKEQHVINHKMKTLQAINEEILQRISHLET 55
++ E+ + + L+ E++ ++ L
Sbjct: 55 LSVQAEEQKLISEEDLLRKRREQLKHKLEQLGG 87
>4e16_A Precorrin-4 C(11)-methyltransferase; structural genomics, center
for structural genomics of infec diseases, csgid; 2.49A
{Clostridium difficile}
Length = 253
Score = 28.6 bits (65), Expect = 3.1
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 135 KSTVSTLATLQEKVEANNIIMQAL 158
K TL+ + KV+ NNI AL
Sbjct: 203 KIVKGTLSDIAVKVKENNINKTAL 226
Score = 28.6 bits (65), Expect = 3.1
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 165 KSTVSTLATLQEKVEANNIIMQAL 188
K TL+ + KV+ NNI AL
Sbjct: 203 KIVKGTLSDIAVKVKENNINKTAL 226
>1cbf_A Cobalt-precorrin-4 transmethylase; precorrin-4 methyltransferase,
cobalamin biosynth methyltransferase; HET: SAH; 2.40A
{Bacillus megaterium} SCOP: c.90.1.1 PDB: 2cbf_A*
Length = 285
Score = 28.7 bits (65), Expect = 3.8
Identities = 6/21 (28%), Positives = 11/21 (52%)
Query: 138 VSTLATLQEKVEANNIIMQAL 158
+T+ L + + N I QA+
Sbjct: 222 RTTVKDLDDAMRTNGIRKQAM 242
Score = 28.7 bits (65), Expect = 3.8
Identities = 6/21 (28%), Positives = 11/21 (52%)
Query: 168 VSTLATLQEKVEANNIIMQAL 188
+T+ L + + N I QA+
Sbjct: 222 RTTVKDLDDAMRTNGIRKQAM 242
>2ajg_A Leucyl-tRNA synthetase; editing domain, ligase; 2.00A {Escherichia
coli} PDB: 2ajh_A 2aji_A
Length = 196
Score = 27.8 bits (63), Expect = 5.5
Identities = 7/39 (17%), Positives = 16/39 (41%), Gaps = 10/39 (25%)
Query: 184 IMQALRN--GRSEGLSLSSQLDDS-KNLS-----PETIM 214
+ + EG+ ++ ++D L+ P+T M
Sbjct: 1 MHH--HHHHAMGEGVEITFNVNDYDNTLTVYTTRPDTFM 37
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing
cluster, hydrophobic core, contractIle protein; 1.80A
{Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Length = 155
Score = 27.2 bits (60), Expect = 7.3
Identities = 25/146 (17%), Positives = 57/146 (39%), Gaps = 2/146 (1%)
Query: 35 KMKTLQAINEEILQRISHLETSSQTNVKTLFNITKQISGVEHLHSSMMELLESIETIENK 94
+MK L+ EE+L + HLE K L ++ E + + E L+++
Sbjct: 1 RMKQLEDKVEELLSKNYHLENEVARLKKLLERAEERAELSEGKSAELEEELKTVTNNLKS 60
Query: 95 VDYNLPTIQREISKLEFGVAQINSTLQVVNETRESDANYLKSTVSTLATLQEKVEANNII 154
++ ++ K E + ++ L+ E + ++ L++++ A +
Sbjct: 61 LEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLK 120
Query: 155 MQALSDANYLKSTVSTLATLQEKVEA 180
+A+S+ +K + L K
Sbjct: 121 YKAISEE--MKQLEDKVEELLSKNYH 144
>1dqz_A 85C, protein (antigen 85-C); fibronectin, structural genomics, PSI,
protein structure initiative, TB structural genomics
consortium; 1.50A {Mycobacterium tuberculosis} SCOP:
c.69.1.3 PDB: 3hrh_A 1dqy_A 1va5_A* 1f0n_A* 1f0p_A*
Length = 280
Score = 27.5 bits (61), Expect = 8.6
Identities = 11/82 (13%), Positives = 25/82 (30%), Gaps = 16/82 (19%)
Query: 276 DYAQGFGSPESEFWIGNDALHRLTSQDNMSLRIEFVDIYGKAWYAEYDTFSVASESEGYR 335
+ +G W ND + ++ + RI +V G ++ ++
Sbjct: 171 NANSMWGPSSDPAWKRNDPMVQIPRLVANNTRI-WVYC-GNGTPSDLGGDNIP------- 221
Query: 336 LNLSGYHGNASDAMTYQNNMKF 357
+ +T + N F
Sbjct: 222 -------AKFLEGLTLRTNQTF 236
>2o4j_A Vitamin D3 receptor; nuclear receptor-ligand complex,
hormone/growth factor receptor complex; HET: VD4; 1.74A
{Rattus norvegicus} SCOP: a.123.1.1 PDB: 1rk3_A* 1rjk_A*
1rkh_A* 1rkg_A* 2o4r_A*
Length = 292
Score = 27.5 bits (61), Expect = 9.5
Identities = 7/66 (10%), Positives = 28/66 (42%), Gaps = 5/66 (7%)
Query: 22 KHHLEKEQHVINHKMKTLQAINEEILQRISHLETSSQTNVKTLFNITKQISGVEHLHSSM 81
+ ++ H + +++Q+++ L + ++ + K +++ Q L +
Sbjct: 198 QTYIRC-----RHPPPGSHQLYAKMIQKLADLRSLNEEHSKQYRSLSFQPENSMKLTPLV 252
Query: 82 MELLES 87
+E+ +
Sbjct: 253 LEVFGN 258
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.128 0.373
Gapped
Lambda K H
0.267 0.0847 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,147,255
Number of extensions: 346997
Number of successful extensions: 725
Number of sequences better than 10.0: 1
Number of HSP's gapped: 683
Number of HSP's successfully gapped: 49
Length of query: 423
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 327
Effective length of database: 4,021,377
Effective search space: 1314990279
Effective search space used: 1314990279
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (26.3 bits)