RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14534
(423 letters)
>d1lwub1 d.171.1.1 (B:219-477) Fibrinogen C-terminal domains {Sea
lamprey (Petromyzon marinus), beta [TaxId: 7757]}
Length = 259
Score = 156 bits (395), Expect = 1e-45
Identities = 67/236 (28%), Positives = 97/236 (41%), Gaps = 55/236 (23%)
Query: 239 SGLQLISLGRS-----VLCD----EHHWMTIQRRYNGMQEFNLKWTDYAQGFGSP----- 284
S I V CD W +Q R +G F W Y FG+
Sbjct: 25 SEAYYIQPDLFSEPYKVFCDMESHGGGWTVVQNRVDGSSNFARDWNTYKAEFGNIAFGNG 84
Query: 285 ------ESEFWIGNDALHRLTSQDNMSLRIEFVDIYGKAWYAEYDTFSVASESEGYRLNL 338
E+W+G +H+LT Q + + D G + YA+Y +F +E++GYRL +
Sbjct: 85 KSICNIPGEYWLGTKTVHQLTKQHTQQVLFDMSDWEGSSVYAQYASFRPENEAQGYRLWV 144
Query: 339 SGYHGNASDA--------------MTYQNNMKFSTIDRDNDL-----SNTHCASNYEGGW 379
Y GNA +A MT N M+FST DRDND HC+ GGW
Sbjct: 145 EDYSGNAGNALLEGATQLMGDNRTMTIHNGMQFSTFDRDNDNWNPGDPTKHCSREDAGGW 204
Query: 380 WFSHCLHANLNGKFNL---------------GLTWFHSEKNEWMAVARSHMKIRRR 420
W++ C AN NG++ G+ W + K W ++ + MK+R +
Sbjct: 205 WYNRCHAANPNGRYYWGGIYTKEQADYGTDDGVVWMNW-KGSWYSMRQMAMKLRPK 259
>d1re3b1 d.171.1.1 (B:200-458) Fibrinogen C-terminal domains {Human
(Homo sapiens), beta [TaxId: 9606]}
Length = 259
Score = 154 bits (389), Expect = 8e-45
Identities = 73/243 (30%), Positives = 102/243 (41%), Gaps = 56/243 (23%)
Query: 231 LPNDCEGHSGLQLISLGRS-----VLCD----EHHWMTIQRRYNGMQEFNLKWTDYAQGF 281
+ S + LI S V CD W IQ R +G +F KW Y QGF
Sbjct: 15 IIRKGGETSEMYLIQPDSSVKPYRVYCDMNTENGGWTVIQNRQDGSVDFGRKWDPYKQGF 74
Query: 282 GSPES------------EFWIGNDALHRLTSQDNMSLRIEFVDIYGKAWYAEYDTFSVAS 329
G+ + E+W+GND + +LT L IE D G A Y F+V +
Sbjct: 75 GNVATNTDGKNYCGLPGEYWLGNDKISQLTRMGPTELLIEMEDWKGDKVKAHYGGFTVQN 134
Query: 330 ESEGYRLNLSGYHGNASDA--------------MTYQNNMKFSTIDRDNDLSNT-----H 370
E+ Y+++++ Y G A +A MT N M FST DRDND T
Sbjct: 135 EANKYQISVNKYRGTAGNALMDGASQLMGENRTMTIHNGMFFSTYDRDNDGWLTSDPRKQ 194
Query: 371 CASNYEGGWWFSHCLHANLNGKFNL---------------GLTWFHSEKNEWMAVARSHM 415
C+ GGWW++ C AN NG++ G+ W + K W ++ + M
Sbjct: 195 CSKEAGGGWWYNRCHAANPNGRYYWGGQYTWDMAKHGTDDGVVWMNW-KGSWYSMRKMSM 253
Query: 416 KIR 418
KIR
Sbjct: 254 KIR 256
>d1fzda_ d.171.1.1 (A:) Fibrinogen C-terminal domains {Human (Homo
sapiens), fibrinogen-420, alpha-E [TaxId: 9606]}
Length = 197
Score = 147 bits (372), Expect = 4e-43
Identities = 76/193 (39%), Positives = 97/193 (50%), Gaps = 34/193 (17%)
Query: 257 WMTIQRRYNGMQEFNLKWTDYAQGFGS----PESEFWIGNDALHRLTSQDNMSLRIEFVD 312
W+ IQ+R +G FN W DY +GFGS E EFW+GND LH LT + ++ LR+E D
Sbjct: 3 WLLIQQRMDGSLNFNRTWQDYKRGFGSLNDEGEGEFWLGNDYLHLLTQRGSV-LRVELED 61
Query: 313 IYGKAWYAEYDTFSVASESEGYRLNLSGYHGNASDAM-----------TYQNNMKFSTID 361
G YA F V SE+EGY L +S Y G A DA+ T NNM+FST D
Sbjct: 62 WAGNEAYA-EYHFRVGSEAEGYALQVSSYEGTAGDALIEGSVEEGAEYTSHNNMQFSTFD 120
Query: 362 RDNDLSNTHCASNYEGGWWFSHCLHANLNGK----------------FNLGLTWFHSEKN 405
RD D +CA Y GGWW+++C ANLNG G+ W +
Sbjct: 121 RDADQWEENCAEVYGGGWWYNNCQAANLNGIYYPGGSYDPRNNSPYEIENGVVWVSF-RG 179
Query: 406 EWMAVARSHMKIR 418
++ MKIR
Sbjct: 180 ADYSLRAVRMKIR 192
>d1lwuc1 d.171.1.1 (C:138-399) Fibrinogen C-terminal domains {Sea
lamprey (Petromyzon marinus), gamma [TaxId: 7757]}
Length = 262
Score = 148 bits (375), Expect = 9e-43
Identities = 67/222 (30%), Positives = 95/222 (42%), Gaps = 43/222 (19%)
Query: 239 SGLQLISLGRS-----VLCD---EHHWMTIQRRYNGMQEFNLKWTDYAQGFG----SPES 286
SGL I ++ V C+ + W IQ R++G F W Y +GFG + +
Sbjct: 28 SGLYYIKPLKAKQPFLVFCEIENGNGWTVIQHRHDGSVNFTRDWVSYREGFGYLAPTLTT 87
Query: 287 EFWIGNDALHRLTSQDNMSLRIEFVDIYGKAWYAEYDTFSVASESEGYR----LNLSGYH 342
EFW+GN+ +H LT Q LRI+ D YA+Y F + ES+ YR + L G
Sbjct: 88 EFWLGNEKIHLLTGQQAYRLRIDLTDWENTHRYADYGHFKLTPESDEYRLFYSMYLDGDA 147
Query: 343 GNASDAMTYQ-----------NNMKFSTIDRDNDLSNTHCASNYEGGWWFSHCLHANLNG 391
GNA D + M FST +RDND CA GWW + C +LNG
Sbjct: 148 GNAFDGFDFGDDPQDKFYTTHLGMLFSTPERDNDKYEGSCAEQDGSGWWMNRCHAGHLNG 207
Query: 392 KFNL---------------GLTWFHSEKNEWMAVARSHMKIR 418
K+ G+ W + W ++ + MK+
Sbjct: 208 KYYFGGNYRKTDVEFPYDDGIIWATW-HDRWYSLKMTTMKLL 248
>d1jc9a_ d.171.1.1 (A:) Tachylectin 5a {Japanese horseshoe crab
(Tachypleus tridentatus) [TaxId: 6853]}
Length = 220
Score = 147 bits (371), Expect = 1e-42
Identities = 72/216 (33%), Positives = 97/216 (44%), Gaps = 30/216 (13%)
Query: 232 PNDC-------EGHSGLQLISLGRS-------VLCD----EHHWMTIQRRYNG---MQEF 270
P DC SG I V CD W IQRR N F
Sbjct: 2 PTDCADILLNGYRSSGGYRIWPKSWMTVGTLNVYCDMETDGGGWTVIQRRGNYGNPSDYF 61
Query: 271 NLKWTDYAQGFGSPESEFWIGNDALHRLTSQDNMSLRIEFVDIYGKAWYAEYDTFSVASE 330
W +Y GFG+ E +FW+GND + LT+Q N +R + D YA Y F + +E
Sbjct: 62 YKPWKNYKLGFGNIEKDFWLGNDRIFALTNQRNYMIRFDLKDKENDTRYAIYQDFWIENE 121
Query: 331 SEGYRLNLSGYHGNASDAMTYQNNMKFSTIDRDNDLSNTHCASNYEGGWWFSHCLHANLN 390
Y L++ Y G+A ++ N FSTID+D+D THCA Y+GGWW+ C +NLN
Sbjct: 122 DYLYCLHIGNYSGDAGNSFGRHNGHNFSTIDKDHDTHETHCAQTYKGGWWYDRCHESNLN 181
Query: 391 GKFN--------LGLTWFHSEKNEWMAVARSHMKIR 418
G + G+ W K ++ + MKIR
Sbjct: 182 GLYLNGEHNSYADGIEWRAW-KGYHYSLPQVEMKIR 216
>d1fida_ d.171.1.1 (A:) Fibrinogen C-terminal domains {Human (Homo
sapiens), gamma [TaxId: 9606]}
Length = 259
Score = 141 bits (356), Expect = 6e-40
Identities = 73/251 (29%), Positives = 110/251 (43%), Gaps = 58/251 (23%)
Query: 219 KIHDSYLQVVGKLPNDC-------EGHSGLQLISLGRS-----VLCDEHH----WMTIQR 262
+IHD + GK DC SGL I ++ V C+ W Q+
Sbjct: 1 QIHD----ITGK---DCQDIANKGAKQSGLYFIKPLKANQQFLVYCEIDGSGNGWTVFQK 53
Query: 263 RYNGMQEFNLKWTDYAQGFG----SPESEFWIGNDALHRLTSQDNMS--LRIEFVDIYGK 316
R +G +F W Y +GFG + +EFW+GN+ +H +++Q + LR+E D G+
Sbjct: 54 RLDGSVDFKKNWIQYKEGFGHLSPTGTTEFWLGNEKIHLISTQSAIPYALRVELEDWNGR 113
Query: 317 AWYAEYDTFSVASESEGYRLNLSGYH-GNASDA--------------MTYQNNMKFSTID 361
A+Y F V E++ YRL + + G+A DA T N M+FST D
Sbjct: 114 TSTADYAMFKVGPEADKYRLTYAYFAGGDAGDAFDGFDFGDDPSDKFFTSHNGMQFSTWD 173
Query: 362 RDNDLSNTHCASNYEGGWWFSHCLHANLNGKFNLGLTWFHSE--------------KNEW 407
DND +CA GWW + C +LNG + G T+ + K W
Sbjct: 174 NDNDKFEGNCAEQDGSGWWMNKCHAGHLNGVYYQGGTYSKASTPNGYDNGIIWATWKTRW 233
Query: 408 MAVARSHMKIR 418
++ ++ MKI
Sbjct: 234 YSMKKTTMKII 244
>d2biba1 b.109.1.1 (A:309-541) Teichoic acid phosphorylcholine
esterase Pce (LytD), C-terminal domain {Streptococcus
pneumoniae [TaxId: 1313]}
Length = 233
Score = 29.7 bits (65), Expect = 0.58
Identities = 15/159 (9%), Positives = 41/159 (25%), Gaps = 2/159 (1%)
Query: 252 CDEHHWMTIQRRYNGMQEFNLKWTDYAQGFGSPESEFWIGNDALHRLTSQDNMSLRIEFV 311
+HW + + + + + E D + S++ ++
Sbjct: 52 KWNNHWFYLTDSGASAKNWKKIDGIWYYFNKENQMEIGWVQDKEQWYYLDVDGSMKTGWL 111
Query: 312 DIYGKAWYAEYDTFSVASESEGYRLNLSGYHGNASDAMTYQNNMKFSTIDRDNDLSNTHC 371
G+ +Y + Y + T + + ++ +
Sbjct: 112 QYMGQWYY--FAPSGEMKMGWVKDKETWYYMDSTGVMKTGEIEVAGQHYYLEDSGAMKQG 169
Query: 372 ASNYEGGWWFSHCLHANLNGKFNLGLTWFHSEKNEWMAV 410
W+F + G W+ ++N + V
Sbjct: 170 WHKKANDWYFYKTDGSRAVGWIKDKDKWYFLKENGQLLV 208
>d1l2pa_ f.23.21.1 (A:) F1F0 ATP synthase subunit B, membrane domain
{Escherichia coli [TaxId: 562]}
Length = 61
Score = 24.6 bits (54), Expect = 5.7
Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 4/41 (9%)
Query: 147 KVEANNIIMQALSDANYLKSTVSTLATLQEKVEANNIIMQA 187
K EA II QA + + A + E I+ QA
Sbjct: 8 KAEAQVIIEQANKRRSQILDEAKAEA----EQERTKIVAQA 44
>d2efva1 a.43.1.12 (A:6-87) Uncharacterized protein MJ0366
{Methanococcus jannaschii [TaxId: 2190]}
Length = 82
Score = 24.7 bits (54), Expect = 6.7
Identities = 5/29 (17%), Positives = 16/29 (55%)
Query: 34 HKMKTLQAINEEILQRISHLETSSQTNVK 62
HK++ ++ ++ + L+R E + ++
Sbjct: 26 HKLENVENVDIDTLRRAIEAEKKYKRSIT 54
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon
Methanobacterium thermoautotrophicum [TaxId: 145262]}
Length = 107
Score = 25.1 bits (55), Expect = 7.1
Identities = 13/86 (15%), Positives = 33/86 (38%), Gaps = 2/86 (2%)
Query: 26 EKEQHVINHKMKTLQAINEEILQRISHLETSSQTNVKTLFNITKQISG-VEHLHSSMMEL 84
+ QH + + + LQ + I + +E K L +++ + S + +
Sbjct: 1 QNVQHQLA-QFQQLQQQAQAISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILI 59
Query: 85 LESIETIENKVDYNLPTIQREISKLE 110
+ + + ++ L T+Q +E
Sbjct: 60 RVAKDELTEELQEKLETLQLREKTIE 85
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 88
Score = 24.9 bits (54), Expect = 7.2
Identities = 4/33 (12%), Positives = 14/33 (42%)
Query: 23 HHLEKEQHVINHKMKTLQAINEEILQRISHLET 55
++ E+ + + L+ E++ ++ L
Sbjct: 55 LSVQAEEQKLISEEDLLRKRREQLKHKLEQLGG 87
>d1ekea_ c.55.3.1 (A:) Class II ribonuclease H (RNase HII) {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 225
Score = 25.6 bits (55), Expect = 9.6
Identities = 10/111 (9%), Positives = 30/111 (27%), Gaps = 2/111 (1%)
Query: 202 LDDSKNLSPETIMQQMNKIHDSYLQVVGKLPNDCEGHSGLQLISLGRSVLCDEHHWMTIQ 261
+ DSK L+ + + L + + + +
Sbjct: 38 VKDSKELTKNKRAYLKKLLENLGYVEKRILEAEEINQLMNSINLNDIEINAFSKVAKNLI 97
Query: 262 RRYNGMQEFNLKWTDYAQGFGSPESEFWIGNDALHRLTSQDNMSLRIEFVD 312
+ N + + D + + D + + + N++++I
Sbjct: 98 EKLNIRDDEIEIYIDACSTNTKKFEDSFK--DKIEDIIKERNLNIKIIAEH 146
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.128 0.373
Gapped
Lambda K H
0.267 0.0599 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,495,400
Number of extensions: 65354
Number of successful extensions: 193
Number of sequences better than 10.0: 1
Number of HSP's gapped: 175
Number of HSP's successfully gapped: 16
Length of query: 423
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 335
Effective length of database: 1,199,356
Effective search space: 401784260
Effective search space used: 401784260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (24.9 bits)