Query psy14535
Match_columns 155
No_of_seqs 106 out of 341
Neff 4.1
Searched_HMMs 29240
Date Fri Aug 16 22:21:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14535.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14535hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a17_X RPL32, 60S ribosomal pr 100.0 1.7E-72 5.9E-77 436.5 11.8 134 22-155 1-134 (134)
2 3u5e_e 60S ribosomal protein L 100.0 2.7E-71 9.3E-76 428.0 10.7 128 26-153 3-130 (130)
3 3iz5_h 60S ribosomal protein L 100.0 4.9E-72 1.7E-76 433.5 4.7 131 25-155 3-133 (133)
4 2zkr_y 60S ribosomal protein L 100.0 1.2E-71 4.1E-76 432.2 5.0 135 21-155 1-135 (135)
5 3j21_b PFEL32, 50S ribosomal p 100.0 2.9E-60 9.8E-65 366.5 8.4 114 32-147 15-130 (130)
6 1vq8_Y 50S ribosomal protein L 100.0 1.5E-42 5E-47 288.2 8.9 112 34-147 123-234 (241)
7 3nkl_A UDP-D-quinovosamine 4-d 40.9 37 0.0013 23.4 4.3 46 99-144 51-97 (141)
8 3v7e_A Ribosome-associated pro 36.8 80 0.0027 21.0 5.3 47 98-144 12-58 (82)
9 1sb0_B Protein C-MYB; CREB-bin 32.3 14 0.00049 20.9 0.7 12 101-112 4-15 (26)
10 2dt5_A AT-rich DNA-binding pro 31.0 56 0.0019 25.5 4.3 45 97-144 125-170 (211)
11 3n3f_A Collagen alpha-1(XV) ch 26.7 14 0.00047 24.1 0.0 21 37-57 23-43 (54)
12 3on1_A BH2414 protein; structu 24.9 1.4E+02 0.0049 20.3 5.1 46 99-144 20-65 (101)
13 3e3m_A Transcriptional regulat 24.0 16 0.00056 28.9 0.0 60 89-149 5-64 (355)
14 3v7q_A Probable ribosomal prot 23.7 1.7E+02 0.0057 20.0 5.3 45 99-143 21-65 (101)
15 3hsh_A Endostatin, collagen al 23.4 17 0.00059 23.8 0.0 21 37-57 25-45 (56)
16 3cpq_A 50S ribosomal protein L 22.8 1.6E+02 0.0054 20.4 5.1 46 98-143 22-67 (110)
No 1
>4a17_X RPL32, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_X 4a1c_X 4a1e_X
Probab=100.00 E-value=1.7e-72 Score=436.52 Aligned_cols=134 Identities=50% Similarity=0.918 Sum_probs=124.7
Q ss_pred eeecCCCCCccccccCCCcccccccccccccccccCCccCCcchhhhccCCcCCCCCCCCCCccccccCCCCceEEEEec
Q psy14535 22 MSIKPVYRPKIVKKRRKVFIRHQSDRYKKLHRSWRKPKGIDNRVRRRFKGQYLMPNIGYGSAKKTRHMLPNHFLKVVVHN 101 (155)
Q Consensus 22 ~~~~pl~k~kivKKr~~kF~R~~sdr~~rvk~sWRKPrGiDnkvRrr~kG~~~mP~iGYgS~k~tR~l~PsGf~~vlV~N 101 (155)
|+++||++|+||||+|++|+|||||+|++|++|||||+||||+||++|+|+++||+||||||++|||||||||++|+|||
T Consensus 1 ~~~~~~~~~kivKkrtkkF~R~~sdry~ri~~~WRKPrGiDnrvRrrfKG~~~mp~iGYgS~kktR~l~PsGf~~~lV~N 80 (134)
T 4a17_X 1 MAIKPVAHKKIIKKRTKKFVRFESEDFAKLDSSWRRPRGIDNRVRRRFRGQRRMAKIGFASDAATKHLLPNGFKKFLIRN 80 (134)
T ss_dssp --CCCCCCCCCCCSCCSCCCCTTTTTCSSSCCSCCCCCCSSCTGGGTCTTSCCCCCSTTSCCTTTTTBCTTSCEEEEECS
T ss_pred CCccCCCCCcceeccCCCccccccccccccCCCCCCCCCcccchhhcccCccCCCccCcCCChhhcccCCCCCeEEEeCC
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHhhcCcceEEEeecCCccccHHHHHHHHHHcCCceecCCcceeecccC
Q psy14535 102 VKELEVLMMQNRKYCAEIGHAVSSKKRRDIVQRAQQLSIRLTNGNARIRTEENE 155 (155)
Q Consensus 102 vkeLe~L~m~n~~~aaeIAh~Vg~kkR~~I~erA~el~ikV~N~~arl~~ee~e 155 (155)
|+|||+|+|||++|||||||+||++||++|+|+|+||||+||||+|||++|||.
T Consensus 81 vkeLe~Llm~n~~~aaeIAh~Vs~rkR~~IverA~qL~irV~Np~arl~~ee~~ 134 (134)
T 4a17_X 81 PADLEILLMNNRTYCGEIAHNISAQVKAALVKRAAELGVRLTNANAKVKVQESA 134 (134)
T ss_dssp SHHHHHHHHHTTTEEEEECTTSCHHHHHHHHHHHHHHTCCBSSCCCC-------
T ss_pred HHHHHHHhcCCcccEEEEecCcccccHHHHHHHHHHhCCcccCCcccceecccC
Confidence 999999999999999999999999999999999999999999999999999983
No 2
>3u5e_e 60S ribosomal protein L32, 60S ribosomal protein L31-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_h 1s1i_0 3izs_h 3o5h_b 3o58_b 3u5i_e 4b6a_e 3jyw_0
Probab=100.00 E-value=2.7e-71 Score=427.98 Aligned_cols=128 Identities=48% Similarity=0.793 Sum_probs=125.6
Q ss_pred CCCCCccccccCCCcccccccccccccccccCCccCCcchhhhccCCcCCCCCCCCCCccccccCCCCceEEEEechhhh
Q psy14535 26 PVYRPKIVKKRRKVFIRHQSDRYKKLHRSWRKPKGIDNRVRRRFKGQYLMPNIGYGSAKKTRHMLPNHFLKVVVHNVKEL 105 (155)
Q Consensus 26 pl~k~kivKKr~~kF~R~~sdr~~rvk~sWRKPrGiDnkvRrr~kG~~~mP~iGYgS~k~tR~l~PsGf~~vlV~NvkeL 105 (155)
||++|+||||+|++|+|||||+|++|++|||||+||||+||++|+|+++||+||||||++|||||||||++|+||||+||
T Consensus 3 ~~~~~kivKkrtkkF~R~~sdry~ri~~~WRKPrGiDnrvRrrfkG~~~mp~iGYgS~kktr~l~PsGf~~~lV~NvkeL 82 (130)
T 3u5e_e 3 SLPHPKIVKKHTKKFKRHHSDRYHRVAENWRKQKGIDSVVRRRFRGNISQPKIGYGSNKKTKFLSPSGHKTFLVANVKDL 82 (130)
T ss_dssp CCCCSCCCCSCCSCCCCTTTTTCTTSCSSCCCCCCSSCTTTTTCTTSCCCCCGGGCCCTTTTTBCTTSCEEEEESSHHHH
T ss_pred CCCCCceeeccCCCccccccccccccCCCCCCCCCcccchhccccCCcCCCcCCCCCChhhcccCCCCCceEEeCCHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCcceEEEeecCCccccHHHHHHHHHHcCCceecCCcceeecc
Q psy14535 106 EVLMMQNRKYCAEIGHAVSSKKRRDIVQRAQQLSIRLTNGNARIRTEE 153 (155)
Q Consensus 106 e~L~m~n~~~aaeIAh~Vg~kkR~~I~erA~el~ikV~N~~arl~~ee 153 (155)
|+|+|||++|||||||+||++||++|+|+|+||||+||||+|||++||
T Consensus 83 e~Llm~n~~~~aeIAh~Vs~rkR~~IverA~ql~irV~Np~arl~~ee 130 (130)
T 3u5e_e 83 ETLTMHTKTYAAEIAHNISAKNRVVILARAKALGIKVTNPKGRLALEA 130 (130)
T ss_dssp GGGTTCTTTEEEEECTTCCHHHHHHHHHHHHHHTCCBSCTTTTCCC--
T ss_pred HHHhcCCcccEEEEecccccccHHHHHHHHHHhCCcccCCCccccccC
Confidence 999999999999999999999999999999999999999999999997
No 3
>3iz5_h 60S ribosomal protein L32 (L32E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_h 2zkr_9
Probab=100.00 E-value=4.9e-72 Score=433.53 Aligned_cols=131 Identities=66% Similarity=1.024 Sum_probs=129.7
Q ss_pred cCCCCCccccccCCCcccccccccccccccccCCccCCcchhhhccCCcCCCCCCCCCCccccccCCCCceEEEEechhh
Q psy14535 25 KPVYRPKIVKKRRKVFIRHQSDRYKKLHRSWRKPKGIDNRVRRRFKGQYLMPNIGYGSAKKTRHMLPNHFLKVVVHNVKE 104 (155)
Q Consensus 25 ~pl~k~kivKKr~~kF~R~~sdr~~rvk~sWRKPrGiDnkvRrr~kG~~~mP~iGYgS~k~tR~l~PsGf~~vlV~Nvke 104 (155)
.||++|+||||+|++|+|||||+|++|++|||||+||||+||++|+|+++||+||||||++|||||||||++|+||||+|
T Consensus 3 ~~~~~~kivKKrtkkF~Rh~sdry~ri~~~WRKPrGiDnrvRrrfkG~~~mp~iGYgS~kktr~l~PsGf~~~lV~Nvke 82 (133)
T 3iz5_h 3 VPLLTKKIVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNKFKKFVVHNVSE 82 (133)
T ss_dssp HHHHHHHHTTCCCSCCCCTTGGGSSSSCSSCCCCCSTTCHHHHTCTTSCCCCCGGGCCCTTTTTBCTTSCEEEEESSHHH
T ss_pred cCCCCCcceeccCCCccccccccccccCCCCCCCCCcccchhccccCCcCCCccCCCCChhhcccCCCCCeEEEeCCHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhhcCcceEEEeecCCccccHHHHHHHHHHcCCceecCCcceeecccC
Q psy14535 105 LEVLMMQNRKYCAEIGHAVSSKKRRDIVQRAQQLSIRLTNGNARIRTEENE 155 (155)
Q Consensus 105 Le~L~m~n~~~aaeIAh~Vg~kkR~~I~erA~el~ikV~N~~arl~~ee~e 155 (155)
||+|+|||++|||||||+||++||++|+|+|+||||+||||+|||++||||
T Consensus 83 Le~L~m~n~~~aaeIAh~Vs~rkR~~IverA~qL~irV~Np~arl~~ee~e 133 (133)
T 3iz5_h 83 LELLMMHNRTYCAEIAHNVSTRKRKEIVERAAQLDIVVTNKLARLRSQEDE 133 (133)
T ss_dssp HHHHHHHTTSEEEEECSSSCHHHHHHHHHHHHHHTCCSSHHHHHHHHHCCC
T ss_pred HHHHhcCCCccEEEEecCcccccHHHHHHHHHHhCCcccCCcccccccccC
Confidence 999999999999999999999999999999999999999999999999997
No 4
>2zkr_y 60S ribosomal protein L32; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=1.2e-71 Score=432.18 Aligned_cols=135 Identities=71% Similarity=1.136 Sum_probs=59.6
Q ss_pred eeeecCCCCCccccccCCCcccccccccccccccccCCccCCcchhhhccCCcCCCCCCCCCCccccccCCCCceEEEEe
Q psy14535 21 TMSIKPVYRPKIVKKRRKVFIRHQSDRYKKLHRSWRKPKGIDNRVRRRFKGQYLMPNIGYGSAKKTRHMLPNHFLKVVVH 100 (155)
Q Consensus 21 ~~~~~pl~k~kivKKr~~kF~R~~sdr~~rvk~sWRKPrGiDnkvRrr~kG~~~mP~iGYgS~k~tR~l~PsGf~~vlV~ 100 (155)
+|++.||++++|+||++++|+|||||+|+||++|||||+||||+||++|+|+++||+||||||++|||||||||++|+||
T Consensus 1 ~m~~~~~~~~kivKkr~~kF~R~~sdry~rl~~~WRKPrGiDnrvRrrfkG~~~mp~iGYgS~k~tR~l~PsGf~~~lV~ 80 (135)
T 2zkr_y 1 MAALRPLVKPKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKKTKHMLPSGFRKFLVH 80 (135)
T ss_dssp ----CTTTTTSSSSSCCCC-CCTTTTTCTTSCC-CCCCCCSSCTTTCC-CCSCCCSCTTSCCCTTCC-------------
T ss_pred CCCCcCCCCccccccCCCcccCcchhhccccCccccCCCCCcccceeeccCCCCCCcccCCCChhhcccCCCCCeEEEeC
Confidence 47788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhHHHhhcCcceEEEeecCCccccHHHHHHHHHHcCCceecCCcceeecccC
Q psy14535 101 NVKELEVLMMQNRKYCAEIGHAVSSKKRRDIVQRAQQLSIRLTNGNARIRTEENE 155 (155)
Q Consensus 101 NvkeLe~L~m~n~~~aaeIAh~Vg~kkR~~I~erA~el~ikV~N~~arl~~ee~e 155 (155)
||+|||+|+|||++|||||||+||++||++|+|+|+||||+||||+|||++||+|
T Consensus 81 NvkeLe~Llm~n~~~aaeIah~Vs~kKR~~IverA~eL~IkV~N~~arl~~~e~e 135 (135)
T 2zkr_y 81 NVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNPNARLRSEENE 135 (135)
T ss_dssp -------------------------------------------------------
T ss_pred CHHHHHHHhcCCCceEEEEecccccccHHHHHHHHHHhCCeeeCCccccchhccC
Confidence 9999999999999999999999999999999999999999999999999999987
No 5
>3j21_b PFEL32, 50S ribosomal protein L32E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=2.9e-60 Score=366.52 Aligned_cols=114 Identities=40% Similarity=0.728 Sum_probs=110.7
Q ss_pred cccccCCCcccccccccccccc--cccCCccCCcchhhhccCCcCCCCCCCCCCccccccCCCCceEEEEechhhhHHHh
Q psy14535 32 IVKKRRKVFIRHQSDRYKKLHR--SWRKPKGIDNRVRRRFKGQYLMPNIGYGSAKKTRHMLPNHFLKVVVHNVKELEVLM 109 (155)
Q Consensus 32 ivKKr~~kF~R~~sdr~~rvk~--sWRKPrGiDnkvRrr~kG~~~mP~iGYgS~k~tR~l~PsGf~~vlV~NvkeLe~L~ 109 (155)
.+|+++|+|+|||||+|++|++ |||||+||||+||++|+|+++||+||||||++|||||||||++|+||||+|||+|
T Consensus 15 ~~k~k~pkF~R~~sdr~~ri~~~~~WRKPrGiDnrvRrrfKG~~~mp~iGYgS~kktR~l~PsGf~~~lV~NvkeLe~L- 93 (130)
T 3j21_b 15 RLKRKKPRFLRQEWWRYPKFKNDPKWRRPKGIDSKMRLKLKGKPRSPSIGWSSPKLVRGLHPSGYEEVLVHNVKELEAL- 93 (130)
T ss_dssp HHHHCCCCCCCSCCSSCSSSCSSCCCCCCCCSSCHHHHTCTTSCCCCCGGGCCCTTTTTCCTTSCEEEEECSTTTTTTC-
T ss_pred HHhhcCCCeeccccccceecCCCCCCCCCCCcccchhccccCCCCCCccCCCCcccccccCCCCCceEEecCHHHHHhh-
Confidence 4678899999999999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred hcCcceEEEeecCCccccHHHHHHHHHHcCCceecCCc
Q psy14535 110 MQNRKYCAEIGHAVSSKKRRDIVQRAQQLSIRLTNGNA 147 (155)
Q Consensus 110 m~n~~~aaeIAh~Vg~kkR~~I~erA~el~ikV~N~~a 147 (155)
||++|||||||+||++||++|+|+|+||||+||||+.
T Consensus 94 -~~~~~~aeIAh~Vs~rkR~~IverA~qL~ikV~Np~~ 130 (130)
T 3j21_b 94 -DPKRQAARIAHTVGKKKRIEIIKRAEELGIKVLNPRV 130 (130)
T ss_dssp -CTTTEEEEECTTCCHHHHHHHHHHHHHHTCCCCCCC-
T ss_pred -CCCCceEEEecCcccccHHHHHHHHHHhCCcccCCCC
Confidence 9999999999999999999999999999999999973
No 6
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=100.00 E-value=1.5e-42 Score=288.16 Aligned_cols=112 Identities=30% Similarity=0.469 Sum_probs=109.8
Q ss_pred cccCCCcccccccccccccccccCCccCCcchhhhccCCcCCCCCCCCCCccccccCCCCceEEEEechhhhHHHhhcCc
Q psy14535 34 KKRRKVFIRHQSDRYKKLHRSWRKPKGIDNRVRRRFKGQYLMPNIGYGSAKKTRHMLPNHFLKVVVHNVKELEVLMMQNR 113 (155)
Q Consensus 34 KKr~~kF~R~~sdr~~rvk~sWRKPrGiDnkvRrr~kG~~~mP~iGYgS~k~tR~l~PsGf~~vlV~NvkeLe~L~m~n~ 113 (155)
++++|+|+||+||+|+||+++||+|+||||+||++|+|+++||+|||+||+++|++|||||+.|+||||+||++| +|+
T Consensus 123 ~~~~~efvr~d~d~~~~~~~~wrkP~g~d~~vr~~f~g~~~~~~ig~~s~~k~r~~lp~G~~~~~v~n~~dL~~l--~~~ 200 (241)
T 1vq8_Y 123 RVGKPQFNRQDHHKKKRVSTSWRKPRGQLSKQRRGIKGKGDTVEAGFRSPTAVRGKHPSGFEEVRVHNVDDLEGV--DGD 200 (241)
T ss_dssp HHCCCCCCCTTGGGCTTSCSSCCCCCCTTCTTTTTCTTSCCCCCGGGCCCTTTTTCCTTSCEEEEESSGGGGTTC--CTT
T ss_pred ccCCCCeeccchhheeecccCcCCCCCccHHHHHHHhCCCCCCccccCCCCceEEECCCCCEeeeccCHhHhhcc--CcH
Confidence 567899999999999999999999999999999999999999999999999999999999999999999999999 899
Q ss_pred ceEEEeecCCccccHHHHHHHHHHcCCceecCCc
Q psy14535 114 KYCAEIGHAVSSKKRRDIVQRAQQLSIRLTNGNA 147 (155)
Q Consensus 114 ~~aaeIAh~Vg~kkR~~I~erA~el~ikV~N~~a 147 (155)
+||++|+|+||+|+|.+|+++|+|+||+||||++
T Consensus 201 ~~~a~i~~~tGskkh~~i~~~A~~~gikv~n~~~ 234 (241)
T 1vq8_Y 201 TEAVRIASKVGARKRERIEEEAEDAGIRVLNPTY 234 (241)
T ss_dssp TEEEEECTTSCHHHHHHHHHHHHHTTCCBSSCCE
T ss_pred HHHHHHHHHhccHhHHHHHHHHHHcCCcccCCCc
Confidence 9999999999999999999999999999999997
No 7
>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri}
Probab=40.95 E-value=37 Score=23.36 Aligned_cols=46 Identities=15% Similarity=0.200 Sum_probs=32.3
Q ss_pred EechhhhHHHhhcCcceEEEeecC-CccccHHHHHHHHHHcCCceec
Q psy14535 99 VHNVKELEVLMMQNRKYCAEIGHA-VSSKKRRDIVQRAQQLSIRLTN 144 (155)
Q Consensus 99 V~NvkeLe~L~m~n~~~aaeIAh~-Vg~kkR~~I~erA~el~ikV~N 144 (155)
|...+||+.++....-..+-||-. .....+.+|++.+.++|++|.-
T Consensus 51 V~g~~~l~~~~~~~~id~viia~~~~~~~~~~~i~~~l~~~gv~v~~ 97 (141)
T 3nkl_A 51 IYRPKYLERLIKKHCISTVLLAVPSASQVQKKVIIESLAKLHVEVLT 97 (141)
T ss_dssp EECGGGHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHTTTCEEEE
T ss_pred EECHHHHHHHHHHCCCCEEEEeCCCCCHHHHHHHHHHHHHcCCeEEE
Confidence 444888988765444456667643 3345678999999999998853
No 8
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=36.76 E-value=80 Score=20.98 Aligned_cols=47 Identities=9% Similarity=0.085 Sum_probs=37.7
Q ss_pred EEechhhhHHHhhcCcceEEEeecCCccccHHHHHHHHHHcCCceec
Q psy14535 98 VVHNVKELEVLMMQNRKYCAEIGHAVSSKKRRDIVQRAQQLSIRLTN 144 (155)
Q Consensus 98 lV~NvkeLe~L~m~n~~~aaeIAh~Vg~kkR~~I~erA~el~ikV~N 144 (155)
++.-.++....+...+...+-||++++..-...|...|.+.+|.+.-
T Consensus 12 ~~~G~~~v~kai~~gkaklViiA~D~~~~~~~~i~~lc~~~~Ip~~~ 58 (82)
T 3v7e_A 12 IIIGTKQTVKALKRGSVKEVVVAKDADPILTSSVVSLAEDQGISVSM 58 (82)
T ss_dssp EEESHHHHHHHHTTTCEEEEEEETTSCHHHHHHHHHHHHHHTCCEEE
T ss_pred eeEcHHHHHHHHHcCCeeEEEEeCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 34455666666667788899999999998888999999999997753
No 9
>1sb0_B Protein C-MYB; CREB-binding protein, transcriptional activation, constitutive activation, LXXLL motif, KIX; NMR {Mus musculus} PDB: 2agh_A
Probab=32.29 E-value=14 Score=20.93 Aligned_cols=12 Identities=50% Similarity=0.872 Sum_probs=9.9
Q ss_pred chhhhHHHhhcC
Q psy14535 101 NVKELEVLMMQN 112 (155)
Q Consensus 101 NvkeLe~L~m~n 112 (155)
.++|||.|+|..
T Consensus 4 riKElELLLMS~ 15 (26)
T 1sb0_B 4 RIKELELLLMST 15 (26)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 478999999964
No 10
>2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A*
Probab=30.98 E-value=56 Score=25.53 Aligned_cols=45 Identities=18% Similarity=0.121 Sum_probs=33.5
Q ss_pred EEEechhhhHHHhhcCcceEEEeecCCccccHHHHHHHHHHcCCc-eec
Q psy14535 97 VVVHNVKELEVLMMQNRKYCAEIGHAVSSKKRRDIVQRAQQLSIR-LTN 144 (155)
Q Consensus 97 vlV~NvkeLe~L~m~n~~~aaeIAh~Vg~kkR~~I~erA~el~ik-V~N 144 (155)
+.|...+||+.++.. .-.++-|| +.+-.+.+|++.+.+.|++ |+|
T Consensus 125 v~V~~~~dl~ell~~-~ID~ViIA--~Ps~~~~ei~~~l~~aGi~~Iln 170 (211)
T 2dt5_A 125 GVIEHVDLLPQRVPG-RIEIALLT--VPREAAQKAADLLVAAGIKGILN 170 (211)
T ss_dssp EEEEEGGGHHHHSTT-TCCEEEEC--SCHHHHHHHHHHHHHHTCCEEEE
T ss_pred CeeecHHhHHHHHHc-CCCEEEEe--CCchhHHHHHHHHHHcCCCEEEE
Confidence 345568999988754 45666665 4445677999999999999 778
No 11
>3n3f_A Collagen alpha-1(XV) chain; extracellular matrix, basement membrane, collagen trimerization domain, folding, association, chain selection helix; 2.00A {Homo sapiens}
Probab=26.74 E-value=14 Score=24.08 Aligned_cols=21 Identities=14% Similarity=0.668 Sum_probs=17.3
Q ss_pred CCCcccccccccccccccccC
Q psy14535 37 RKVFIRHQSDRYKKLHRSWRK 57 (155)
Q Consensus 37 ~~kF~R~~sdr~~rvk~sWRK 57 (155)
+--|.-..++.|+|+...||+
T Consensus 23 tL~yv~d~~eLyiRVr~Gwr~ 43 (54)
T 3n3f_A 23 TFIYLRDSTEFFIRVRDGWKK 43 (54)
T ss_dssp EEEEETTTTEEEEEETTEEEE
T ss_pred eEEEEEecceEEEEEcCceee
Confidence 334777788999999999987
No 12
>3on1_A BH2414 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; HET: MSE; 1.65A {Bacillus halodurans}
Probab=24.88 E-value=1.4e+02 Score=20.26 Aligned_cols=46 Identities=2% Similarity=0.106 Sum_probs=35.5
Q ss_pred EechhhhHHHhhcCcceEEEeecCCccccHHHHHHHHHHcCCceec
Q psy14535 99 VHNVKELEVLMMQNRKYCAEIGHAVSSKKRRDIVQRAQQLSIRLTN 144 (155)
Q Consensus 99 V~NvkeLe~L~m~n~~~aaeIAh~Vg~kkR~~I~erA~el~ikV~N 144 (155)
|.-.++....+-..+-..+-||+.++..-+..|...|.+.+|.+.-
T Consensus 20 v~G~~~v~kai~~gka~lViiA~D~~~~~~~~i~~~c~~~~ip~~~ 65 (101)
T 3on1_A 20 LTGEEQVVKAVQNGQVTLVILSSDAGIHTKKKLLDKCGSYQIPVKV 65 (101)
T ss_dssp EESHHHHHHHHHTTCCSEEEEETTSCHHHHHHHHHHHHHHTCCEEE
T ss_pred eECHHHHHHHHHcCCCcEEEEeCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 3344454455556778899999999999899999999999997753
No 13
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=24.02 E-value=16 Score=28.92 Aligned_cols=60 Identities=12% Similarity=0.092 Sum_probs=0.0
Q ss_pred cCCCCceEEEEechhhhHHHhhcCcceEEEeecCCccccHHHHHHHHHHcCCceecCCcce
Q psy14535 89 MLPNHFLKVVVHNVKELEVLMMQNRKYCAEIGHAVSSKKRRDIVQRAQQLSIRLTNGNARI 149 (155)
Q Consensus 89 l~PsGf~~vlV~NvkeLe~L~m~n~~~aaeIAh~Vg~kkR~~I~erA~el~ikV~N~~arl 149 (155)
-++.|-+.+.+..+.++-.+....=|.+..=...|+...|+.|.+-|++||- +.|+.||-
T Consensus 5 ~~~~g~~~~ti~diA~~agVS~~TVSr~Ln~~~~vs~~tr~rV~~~a~~lgY-~pn~~a~~ 64 (355)
T 3e3m_A 5 SRKPGHRPVTMRDVAKAAGVSRMTVSRALKKDSPISSETRERILKVVKDMNY-VPDQVAGS 64 (355)
T ss_dssp -------------------------------------------------------------
T ss_pred CcCCCCCCCcHHHHHHHhCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHhCC-CcCHHHHh
Confidence 3455666666777777766654444444333467999999999999999998 67877754
No 14
>3v7q_A Probable ribosomal protein YLXQ; L7AE superfamily, K-turn binding, K-turn RNA, hypothetical R protein, RNA binding protein; HET: CIT; 1.55A {Bacillus subtilis}
Probab=23.70 E-value=1.7e+02 Score=20.00 Aligned_cols=45 Identities=9% Similarity=0.088 Sum_probs=35.3
Q ss_pred EechhhhHHHhhcCcceEEEeecCCccccHHHHHHHHHHcCCcee
Q psy14535 99 VHNVKELEVLMMQNRKYCAEIGHAVSSKKRRDIVQRAQQLSIRLT 143 (155)
Q Consensus 99 V~NvkeLe~L~m~n~~~aaeIAh~Vg~kkR~~I~erA~el~ikV~ 143 (155)
|.-.++....+-..+...+-||+.++..-+..|...|.+.+|.+.
T Consensus 21 v~G~~~v~kai~~gka~lViiA~D~~~~~~~~i~~~c~~~~vp~~ 65 (101)
T 3v7q_A 21 VSGEDLVIKEIRNARAKLVLLTEDASSNTAKKVTDKCNYYKVPYK 65 (101)
T ss_dssp EESHHHHHHHHHTTCCSEEEEETTSCHHHHHHHHHHHHHTTCCEE
T ss_pred ccchhhhHHHHhcCceeEEEEeccccccchhhhcccccccCCCee
Confidence 334445555555678889999999999999999999999998764
No 15
>3hsh_A Endostatin, collagen alpha-1(XVIII) chain; extracellular matrix, basement membrane, collagen trimerization domain, folding, association; 1.80A {Homo sapiens} PDB: 3hon_A
Probab=23.43 E-value=17 Score=23.82 Aligned_cols=21 Identities=24% Similarity=0.583 Sum_probs=17.4
Q ss_pred CCCcccccccccccccccccC
Q psy14535 37 RKVFIRHQSDRYKKLHRSWRK 57 (155)
Q Consensus 37 ~~kF~R~~sdr~~rvk~sWRK 57 (155)
+--|.-...+.|+|+.+.||+
T Consensus 25 tL~yv~d~~eLyiRVr~Gwr~ 45 (56)
T 3hsh_A 25 WLIFVAEQEELYVRVQNGFRK 45 (56)
T ss_dssp CEEEETTTTEEEEEETTEEEE
T ss_pred eEEEEEecceEEEEEcCceee
Confidence 345777788999999999987
No 16
>3cpq_A 50S ribosomal protein L30E; RNA-protein, elongation factor, ribonucleoprotein, structural genomics, NPPSFA; 1.90A {Methanocaldococcus jannaschii}
Probab=22.78 E-value=1.6e+02 Score=20.45 Aligned_cols=46 Identities=11% Similarity=0.080 Sum_probs=36.5
Q ss_pred EEechhhhHHHhhcCcceEEEeecCCccccHHHHHHHHHHcCCcee
Q psy14535 98 VVHNVKELEVLMMQNRKYCAEIGHAVSSKKRRDIVQRAQQLSIRLT 143 (155)
Q Consensus 98 lV~NvkeLe~L~m~n~~~aaeIAh~Vg~kkR~~I~erA~el~ikV~ 143 (155)
++.-.++....+...+...+-||+.++..-...|...|.+.+|.+.
T Consensus 22 l~~G~~~v~kai~~gka~lViiA~D~~~~~~~~l~~~c~~~~Vp~~ 67 (110)
T 3cpq_A 22 VILGSKRTIKFVKHGEGKLVVLAGNIPKDLEEDVKYYAKLSNIPVY 67 (110)
T ss_dssp EEESHHHHHHHHHTTCCSEEEECTTCBHHHHHHHHHHHHHTTCCEE
T ss_pred eeeCHHHHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHcCCCEE
Confidence 4445555555555677889999999999999999999999999754
Done!