Query psy14539
Match_columns 218
No_of_seqs 186 out of 310
Neff 5.1
Searched_HMMs 46136
Date Fri Aug 16 22:28:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14539.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14539hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF08190 PIH1: pre-RNA process 99.9 4.8E-21 1E-25 171.1 14.3 99 109-209 227-328 (328)
2 cd06472 ACD_ScHsp26_like Alpha 99.2 8.6E-11 1.9E-15 88.4 7.2 65 143-209 7-92 (92)
3 cd06498 ACD_alphaB-crystallin_ 99.2 8.2E-11 1.8E-15 88.3 6.8 65 144-210 6-84 (84)
4 cd06497 ACD_alphaA-crystallin_ 99.1 1.8E-10 3.9E-15 86.7 7.0 65 143-209 8-86 (86)
5 COG0071 IbpA Molecular chapero 99.1 2.3E-10 5E-15 93.2 8.2 65 145-211 50-134 (146)
6 cd06526 metazoan_ACD Alpha-cry 99.1 2.9E-10 6.2E-15 84.2 7.2 66 143-209 5-83 (83)
7 cd06475 ACD_HspB1_like Alpha c 99.1 2.2E-10 4.8E-15 86.2 6.7 65 143-209 8-86 (86)
8 cd06478 ACD_HspB4-5-6 Alpha-cr 99.1 2.6E-10 5.6E-15 85.2 6.8 65 143-209 5-83 (83)
9 PRK11597 heat shock chaperone 99.1 3.7E-10 8.1E-15 92.8 8.4 62 145-210 43-122 (142)
10 cd06469 p23_DYX1C1_like p23_li 99.1 8.1E-10 1.8E-14 79.7 9.0 68 143-212 4-71 (78)
11 cd06476 ACD_HspB2_like Alpha c 99.1 5.9E-10 1.3E-14 83.6 7.5 65 143-209 5-83 (83)
12 cd06464 ACD_sHsps-like Alpha-c 99.1 5.6E-10 1.2E-14 80.8 7.1 65 143-209 5-88 (88)
13 cd06471 ACD_LpsHSP_like Group 99.0 5.3E-10 1.1E-14 83.9 6.9 64 143-209 8-93 (93)
14 cd06479 ACD_HspB7_like Alpha c 99.0 8.5E-10 1.8E-14 82.6 7.2 64 143-208 6-80 (81)
15 cd06481 ACD_HspB9_like Alpha c 99.0 9.9E-10 2.1E-14 82.8 6.9 65 143-209 5-87 (87)
16 cd06470 ACD_IbpA-B_like Alpha- 99.0 1.3E-09 2.9E-14 82.1 7.5 60 145-208 11-89 (90)
17 PRK10743 heat shock protein Ib 99.0 1.2E-09 2.5E-14 89.2 7.6 63 144-210 44-124 (137)
18 cd06482 ACD_HspB10 Alpha cryst 98.9 3.6E-09 7.9E-14 80.3 7.3 63 145-208 8-86 (87)
19 PF00011 HSP20: Hsp20/alpha cr 98.9 5.6E-09 1.2E-13 78.9 8.0 69 143-213 5-91 (102)
20 cd06477 ACD_HspB3_Like Alpha c 98.9 5.5E-09 1.2E-13 78.6 7.4 64 143-208 5-82 (83)
21 cd00298 ACD_sHsps_p23-like Thi 98.9 6.7E-09 1.4E-13 71.9 7.2 64 144-209 5-80 (80)
22 cd06463 p23_like Proteins cont 98.7 1.3E-07 2.8E-12 67.3 8.8 68 143-212 4-76 (84)
23 cd06480 ACD_HspB8_like Alpha-c 98.4 2.3E-06 4.9E-11 65.6 8.0 71 137-208 7-90 (91)
24 cd06466 p23_CS_SGT1_like p23_l 98.3 4E-06 8.8E-11 60.9 8.5 68 143-212 5-77 (84)
25 PF04969 CS: CS domain; Inter 98.0 8.6E-05 1.9E-09 52.4 9.0 65 143-209 8-79 (79)
26 PF05455 GvpH: GvpH; InterPro 97.9 5.3E-05 1.1E-09 64.7 8.5 64 146-212 103-170 (177)
27 KOG4356|consensus 97.7 6E-06 1.3E-10 75.8 -0.4 70 142-211 237-309 (310)
28 cd06465 p23_hB-ind1_like p23_l 97.6 0.00046 1E-08 53.2 8.3 65 143-211 8-78 (108)
29 KOG0710|consensus 97.6 0.00012 2.6E-09 63.0 5.2 69 142-212 91-182 (196)
30 cd06467 p23_NUDC_like p23_like 97.5 0.00081 1.8E-08 49.0 8.8 67 144-212 7-77 (85)
31 cd06489 p23_CS_hSgt1_like p23_ 97.3 0.0016 3.5E-08 47.8 8.3 65 144-210 6-75 (84)
32 cd06468 p23_CacyBP p23_like do 97.2 0.0031 6.8E-08 46.8 8.9 68 143-212 9-85 (92)
33 cd06493 p23_NUDCD1_like p23_NU 97.0 0.01 2.2E-07 44.0 9.4 69 143-212 6-77 (85)
34 cd00237 p23 p23 binds heat sho 96.5 0.021 4.5E-07 44.7 8.2 65 143-211 9-78 (106)
35 cd06488 p23_melusin_like p23_l 96.4 0.022 4.7E-07 42.4 7.7 66 144-211 9-79 (87)
36 KOG3591|consensus 95.9 0.038 8.2E-07 47.0 7.8 68 143-211 70-150 (173)
37 KOG3247|consensus 95.7 0.0052 1.1E-07 58.7 1.6 66 145-210 13-79 (466)
38 KOG1309|consensus 95.6 0.037 8E-07 47.9 6.5 68 143-212 11-83 (196)
39 cd06492 p23_mNUDC_like p23-lik 95.5 0.16 3.4E-06 38.2 9.0 68 144-213 7-80 (87)
40 PLN03088 SGT1, suppressor of 94.4 0.18 4E-06 46.5 8.0 66 144-211 165-235 (356)
41 cd06490 p23_NCB5OR p23_like do 94.4 0.4 8.7E-06 35.8 8.4 66 145-211 8-79 (87)
42 cd06494 p23_NUDCD2_like p23-li 93.8 0.65 1.4E-05 35.5 8.7 67 144-211 14-82 (93)
43 cd06495 p23_NUDCD3_like p23-li 93.6 0.77 1.7E-05 35.8 8.9 67 144-212 13-87 (102)
44 KOG3158|consensus 47.3 46 0.00099 28.8 5.2 65 144-213 16-86 (180)
45 PF14913 DPCD: DPCD protein fa 44.6 35 0.00076 29.9 4.1 65 145-209 96-168 (194)
46 KOG2265|consensus 44.3 1.3E+02 0.0029 26.0 7.6 66 145-212 28-97 (179)
47 PF00347 Ribosomal_L6: Ribosom 40.6 36 0.00078 24.0 3.1 30 159-188 3-32 (77)
48 KOG3260|consensus 25.5 2E+02 0.0044 25.4 5.7 65 143-209 82-152 (224)
49 CHL00140 rpl6 ribosomal protei 24.7 2.2E+02 0.0048 24.1 5.8 44 158-208 12-55 (178)
50 PF09814 HECT_2: HECT-like Ubi 24.5 3.1E+02 0.0068 24.8 7.2 67 145-211 7-77 (354)
51 COG5091 SGT1 Suppressor of G2 24.5 91 0.002 29.3 3.6 81 112-211 170-256 (368)
52 PF13349 DUF4097: Domain of un 22.3 3.5E+02 0.0075 21.2 6.3 46 160-216 86-135 (166)
53 PF13761 DUF4166: Domain of un 21.0 4.4E+02 0.0096 21.7 6.8 50 159-210 96-147 (162)
No 1
>PF08190 PIH1: pre-RNA processing PIH1/Nop17
Probab=99.86 E-value=4.8e-21 Score=171.08 Aligned_cols=99 Identities=36% Similarity=0.557 Sum_probs=91.9
Q ss_pred CCCCCCCeEEEEEeeeccchhhhhhcCCCCCCCCCCCcEEEEEEcCCCC-CCcceEEEeCCEEEEEecc--eEEEcCCCC
Q psy14539 109 LDPRITPEYDIMYQQSVTSEDIYLQMGGKTPSSVSCEDMLVTIQLPGEQ-RENVDCDLTTQHVDIRSIK--YRLALPLPH 185 (218)
Q Consensus 109 ~d~r~~PeY~i~ykq~V~~eD~~lg~~~k~Pss~~~e~LvV~I~LPg~~-~~didLdV~e~~L~L~s~~--Y~L~L~LP~ 185 (218)
...+..|+|+|+|++.|+++|++.+++. + +++.|+.|+|+|+||++. .++|+|+|+++.|.|.++. |+|+|+|||
T Consensus 227 ~~~~~~P~y~i~~~~~v~~~~~~~~~~~-~-~~~~p~~lvv~i~LP~~~s~~~i~LdV~~~~l~l~~~~~~y~L~l~LP~ 304 (328)
T PF08190_consen 227 SPDPPKPEYSIVYRQQVDLEDVRDSSDS-D-SSGSPEELVVEIELPGVESASDIDLDVSEDRLSLSSPKPKYRLDLPLPY 304 (328)
T ss_pred cccccCCcceEEeeccceeeeeeccccC-C-cCCCCceEEEEEECCCcCccceeEEEEeCCEEEEEeCCCceEEEccCCC
Confidence 3458899999999999999999988444 4 678999999999999996 9999999999999999876 999999999
Q ss_pred CccCCCeeeEEECCCCEEEEEEec
Q psy14539 186 PVLPHLCQATWDSDKSELKLTLRL 209 (218)
Q Consensus 186 pVd~~~~kAkfd~~~g~L~VTLpv 209 (218)
+|+.+.|+|+|++++++|+|||||
T Consensus 305 ~V~~~~~~Akf~~~~~~L~vtlpV 328 (328)
T PF08190_consen 305 PVDEDNGKAKFDKKTKTLTVTLPV 328 (328)
T ss_pred cccCCCceEEEccCCCEEEEEEEC
Confidence 999999999999999999999997
No 2
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=99.17 E-value=8.6e-11 Score=88.44 Aligned_cols=65 Identities=17% Similarity=0.281 Sum_probs=58.7
Q ss_pred CCCcEEEEEEcCCCCCCcceEEEeCC-EEEEEec--------------------ceEEEcCCCCCccCCCeeeEEECCCC
Q psy14539 143 SCEDMLVTIQLPGEQRENVDCDLTTQ-HVDIRSI--------------------KYRLALPLPHPVLPHLCQATWDSDKS 201 (218)
Q Consensus 143 ~~e~LvV~I~LPg~~~~didLdV~e~-~L~L~s~--------------------~Y~L~L~LP~pVd~~~~kAkfd~~~g 201 (218)
..+.++|.++|||++.++|+|.|.++ .|.|++. .|.+.+.||..|+.++++|+|.+ |
T Consensus 7 ~~~~~~i~~~lPGv~~edi~i~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~v~~~~i~A~~~n--G 84 (92)
T cd06472 7 TPEAHVFKADVPGVKKEDVKVEVEDGRVLRISGERKKEEEKKGDDWHRVERSSGRFVRRFRLPENADADEVKAFLEN--G 84 (92)
T ss_pred cCCeEEEEEECCCCChHhEEEEEeCCCEEEEEEEecccccccCCCEEEEEEeccEEEEEEECCCCCCHHHCEEEEEC--C
Confidence 34789999999999999999999975 8988762 47889999999999999999999 9
Q ss_pred EEEEEEec
Q psy14539 202 ELKLTLRL 209 (218)
Q Consensus 202 ~L~VTLpv 209 (218)
+|+|+||+
T Consensus 85 vL~I~lPK 92 (92)
T cd06472 85 VLTVTVPK 92 (92)
T ss_pred EEEEEecC
Confidence 99999995
No 3
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=99.16 E-value=8.2e-11 Score=88.28 Aligned_cols=65 Identities=11% Similarity=0.174 Sum_probs=60.2
Q ss_pred CCcEEEEEEcCCCCCCcceEEEeCCEEEEEecc-------------eEEEcCCCCCccCCCeeeEEE-CCCCEEEEEEec
Q psy14539 144 CEDMLVTIQLPGEQRENVDCDLTTQHVDIRSIK-------------YRLALPLPHPVLPHLCQATWD-SDKSELKLTLRL 209 (218)
Q Consensus 144 ~e~LvV~I~LPg~~~~didLdV~e~~L~L~s~~-------------Y~L~L~LP~pVd~~~~kAkfd-~~~g~L~VTLpv 209 (218)
.+.++|+++|||+++++|+|.|.++.|.|++.+ |.+.+.||..||.++++|+|. + |+|+|+||.
T Consensus 6 ~~~~~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~i~A~~~~d--GvL~I~lPk 83 (84)
T cd06498 6 KDKFSVNLDVKHFSPEELKVKVLGDFIEIHGKHEERQDEHGFISREFQRKYRIPADVDPLTITSSLSPD--GVLTVCGPR 83 (84)
T ss_pred CceEEEEEECCCCCHHHeEEEEECCEEEEEEEEcceeCCCCEEEEEEEEEEECCCCCChHHcEEEeCCC--CEEEEEEeC
Confidence 478999999999999999999999999998742 889999999999999999995 8 999999997
Q ss_pred c
Q psy14539 210 T 210 (218)
Q Consensus 210 ~ 210 (218)
+
T Consensus 84 ~ 84 (84)
T cd06498 84 K 84 (84)
T ss_pred C
Confidence 4
No 4
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=99.12 E-value=1.8e-10 Score=86.73 Aligned_cols=65 Identities=11% Similarity=0.146 Sum_probs=59.9
Q ss_pred CCCcEEEEEEcCCCCCCcceEEEeCCEEEEEecc-------------eEEEcCCCCCccCCCeeeEE-ECCCCEEEEEEe
Q psy14539 143 SCEDMLVTIQLPGEQRENVDCDLTTQHVDIRSIK-------------YRLALPLPHPVLPHLCQATW-DSDKSELKLTLR 208 (218)
Q Consensus 143 ~~e~LvV~I~LPg~~~~didLdV~e~~L~L~s~~-------------Y~L~L~LP~pVd~~~~kAkf-d~~~g~L~VTLp 208 (218)
..+.+.|.++|||+++++|++.|.++.|.|++.+ |++.+.||..|+.++.+|+| .+ |+|+|++|
T Consensus 8 ~~~~~~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~Vd~~~i~A~~~~d--GvL~I~~P 85 (86)
T cd06497 8 DRDKFTIYLDVKHFSPEDLTVKVLDDYVEIHGKHSERQDDHGYISREFHRRYRLPSNVDQSAITCSLSAD--GMLTFSGP 85 (86)
T ss_pred cCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEcceeCCCCEEEEEEEEEEECCCCCChHHeEEEeCCC--CEEEEEec
Confidence 4579999999999999999999999999998642 88999999999999999999 68 99999999
Q ss_pred c
Q psy14539 209 L 209 (218)
Q Consensus 209 v 209 (218)
+
T Consensus 86 K 86 (86)
T cd06497 86 K 86 (86)
T ss_pred C
Confidence 5
No 5
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=2.3e-10 Score=93.15 Aligned_cols=65 Identities=23% Similarity=0.474 Sum_probs=60.4
Q ss_pred CcEEEEEEcCCCCCCcceEEEeCCEEEEEec--------------------ceEEEcCCCCCccCCCeeeEEECCCCEEE
Q psy14539 145 EDMLVTIQLPGEQRENVDCDLTTQHVDIRSI--------------------KYRLALPLPHPVLPHLCQATWDSDKSELK 204 (218)
Q Consensus 145 e~LvV~I~LPg~~~~didLdV~e~~L~L~s~--------------------~Y~L~L~LP~pVd~~~~kAkfd~~~g~L~ 204 (218)
+.++|.++|||++.++|+|.+.++.|.|++. .|++.+.||..|+++.++|+|.+ |+|+
T Consensus 50 ~~~~I~~elPG~~kedI~I~~~~~~l~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~Lp~~v~~~~~~A~~~n--GvL~ 127 (146)
T COG0071 50 DEYRITAELPGVDKEDIEITVEGNTLTIRGEREEEEEEEEEGYLRRERAYGEFERTFRLPEKVDPEVIKAKYKN--GLLT 127 (146)
T ss_pred CEEEEEEEcCCCChHHeEEEEECCEEEEEEEecccccccCCceEEEEEEeeeEEEEEECcccccccceeeEeeC--cEEE
Confidence 5999999999999999999999999999763 37799999999999999999999 9999
Q ss_pred EEEeccc
Q psy14539 205 LTLRLTR 211 (218)
Q Consensus 205 VTLpv~r 211 (218)
|+||+..
T Consensus 128 I~lpk~~ 134 (146)
T COG0071 128 VTLPKAE 134 (146)
T ss_pred EEEeccc
Confidence 9999864
No 6
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.10 E-value=2.9e-10 Score=84.17 Aligned_cols=66 Identities=17% Similarity=0.270 Sum_probs=60.8
Q ss_pred CCCcEEEEEEcCCCCCCcceEEEeCCEEEEEec-------------ceEEEcCCCCCccCCCeeeEEECCCCEEEEEEec
Q psy14539 143 SCEDMLVTIQLPGEQRENVDCDLTTQHVDIRSI-------------KYRLALPLPHPVLPHLCQATWDSDKSELKLTLRL 209 (218)
Q Consensus 143 ~~e~LvV~I~LPg~~~~didLdV~e~~L~L~s~-------------~Y~L~L~LP~pVd~~~~kAkfd~~~g~L~VTLpv 209 (218)
.++.++|.++|||+++++|+|.|.++.|.|++. .|++.+.||..|+.++.+|+|.+ .|+|+|++|+
T Consensus 5 ~~~~~~v~~dlpG~~~edI~v~v~~~~L~I~g~~~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~A~~~~-~GvL~I~~Pk 83 (83)
T cd06526 5 DDEKFQVTLDVKGFKPEELKVKVSDNKLVVEGKHEEREDEHGYVSREFTRRYQLPEGVDPDSVTSSLSS-DGVLTIEAPK 83 (83)
T ss_pred cCeeEEEEEECCCCCHHHcEEEEECCEEEEEEEEeeeccCCCEEEEEEEEEEECCCCCChHHeEEEeCC-CcEEEEEecC
Confidence 447999999999999999999999999999763 58899999999999999999987 5999999995
No 7
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=99.10 E-value=2.2e-10 Score=86.22 Aligned_cols=65 Identities=14% Similarity=0.173 Sum_probs=60.2
Q ss_pred CCCcEEEEEEcCCCCCCcceEEEeCCEEEEEec-------------ceEEEcCCCCCccCCCeeeEEE-CCCCEEEEEEe
Q psy14539 143 SCEDMLVTIQLPGEQRENVDCDLTTQHVDIRSI-------------KYRLALPLPHPVLPHLCQATWD-SDKSELKLTLR 208 (218)
Q Consensus 143 ~~e~LvV~I~LPg~~~~didLdV~e~~L~L~s~-------------~Y~L~L~LP~pVd~~~~kAkfd-~~~g~L~VTLp 208 (218)
..+.+.|+++|||+++++|+|+|.++.|.|++. .|++.+.||..|+.++.+|+|. + |+|+|+||
T Consensus 8 ~~~~~~v~~dlPG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~~f~R~f~LP~~vd~~~v~A~~~~d--GvL~I~lP 85 (86)
T cd06475 8 TADRWKVSLDVNHFAPEELVVKTKDGVVEITGKHEEKQDEHGFVSRCFTRKYTLPPGVDPTAVTSSLSPD--GILTVEAP 85 (86)
T ss_pred cCCeEEEEEECCCCCHHHEEEEEECCEEEEEEEECcCcCCCCEEEEEEEEEEECCCCCCHHHcEEEECCC--CeEEEEec
Confidence 457899999999999999999999999999863 2889999999999999999997 8 99999999
Q ss_pred c
Q psy14539 209 L 209 (218)
Q Consensus 209 v 209 (218)
+
T Consensus 86 ~ 86 (86)
T cd06475 86 I 86 (86)
T ss_pred C
Confidence 6
No 8
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=99.09 E-value=2.6e-10 Score=85.17 Aligned_cols=65 Identities=14% Similarity=0.189 Sum_probs=59.4
Q ss_pred CCCcEEEEEEcCCCCCCcceEEEeCCEEEEEec-------------ceEEEcCCCCCccCCCeeeEE-ECCCCEEEEEEe
Q psy14539 143 SCEDMLVTIQLPGEQRENVDCDLTTQHVDIRSI-------------KYRLALPLPHPVLPHLCQATW-DSDKSELKLTLR 208 (218)
Q Consensus 143 ~~e~LvV~I~LPg~~~~didLdV~e~~L~L~s~-------------~Y~L~L~LP~pVd~~~~kAkf-d~~~g~L~VTLp 208 (218)
..+.++|+++|||++.++|+|.|.++.|.|++. .|.+.+.||..||.++.+|+| .+ |+|+|++|
T Consensus 5 ~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~vd~~~i~A~~~~d--GvL~I~~P 82 (83)
T cd06478 5 DKDRFSVNLDVKHFSPEELSVKVLGDFVEIHGKHEERQDEHGFISREFHRRYRLPPGVDPAAITSSLSAD--GVLTISGP 82 (83)
T ss_pred cCceEEEEEECCCCCHHHeEEEEECCEEEEEEEEceEcCCCCEEEEEEEEEEECCCCcChHHeEEEECCC--CEEEEEec
Confidence 347899999999999999999999999999763 288999999999999999999 58 99999999
Q ss_pred c
Q psy14539 209 L 209 (218)
Q Consensus 209 v 209 (218)
+
T Consensus 83 K 83 (83)
T cd06478 83 R 83 (83)
T ss_pred C
Confidence 5
No 9
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=99.09 E-value=3.7e-10 Score=92.82 Aligned_cols=62 Identities=19% Similarity=0.337 Sum_probs=57.2
Q ss_pred CcEEEEEEcCCCCCCcceEEEeCCEEEEEec------------------ceEEEcCCCCCccCCCeeeEEECCCCEEEEE
Q psy14539 145 EDMLVTIQLPGEQRENVDCDLTTQHVDIRSI------------------KYRLALPLPHPVLPHLCQATWDSDKSELKLT 206 (218)
Q Consensus 145 e~LvV~I~LPg~~~~didLdV~e~~L~L~s~------------------~Y~L~L~LP~pVd~~~~kAkfd~~~g~L~VT 206 (218)
+.++|+++|||++.++|+|+|.++.|+|++. .|.+.+.||..|+.+ +|+|++ |+|+||
T Consensus 43 ~~y~v~adlPGv~kedi~V~v~~~~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~f~LP~~vd~~--~A~~~n--GVL~I~ 118 (142)
T PRK11597 43 NHYRITLALAGFRQEDLDIQLEGTRLTVKGTPEQPEKEVKWLHQGLVNQPFSLSFTLAENMEVS--GATFVN--GLLHID 118 (142)
T ss_pred CEEEEEEEeCCCCHHHeEEEEECCEEEEEEEEccccCCCcEEEEEEeCcEEEEEEECCCCcccC--cCEEcC--CEEEEE
Confidence 5799999999999999999999999999863 378999999999998 699999 999999
Q ss_pred Eecc
Q psy14539 207 LRLT 210 (218)
Q Consensus 207 Lpv~ 210 (218)
||+.
T Consensus 119 lPK~ 122 (142)
T PRK11597 119 LIRN 122 (142)
T ss_pred Eecc
Confidence 9975
No 10
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=99.09 E-value=8.1e-10 Score=79.71 Aligned_cols=68 Identities=21% Similarity=0.238 Sum_probs=63.7
Q ss_pred CCCcEEEEEEcCCCCCCcceEEEeCCEEEEEecceEEEcCCCCCccCCCeeeEEECCCCEEEEEEecccc
Q psy14539 143 SCEDMLVTIQLPGEQRENVDCDLTTQHVDIRSIKYRLALPLPHPVLPHLCQATWDSDKSELKLTLRLTRE 212 (218)
Q Consensus 143 ~~e~LvV~I~LPg~~~~didLdV~e~~L~L~s~~Y~L~L~LP~pVd~~~~kAkfd~~~g~L~VTLpv~re 212 (218)
..+.+.|+|.+||++.+++++.++...|.++..+|.+.+.||++|++++++|++.+ |.|+|+|++..+
T Consensus 4 t~~~v~i~i~~p~v~~~~v~v~~~~~~l~i~~~~~~~~~~l~~~I~~e~~~~~~~~--~~l~i~L~K~~~ 71 (78)
T cd06469 4 TDEDVKISVPLKGVKTSKVDIFCSDLYLKVNFPPYLFELDLAAPIDDEKSSAKIGN--GVLVFTLVKKEP 71 (78)
T ss_pred cCCEEEEEEEeCCCccccceEEEecCEEEEcCCCEEEEEeCcccccccccEEEEeC--CEEEEEEEeCCC
Confidence 45789999999999999999999999999999999999999999999999999988 999999998754
No 11
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=99.06 E-value=5.9e-10 Score=83.61 Aligned_cols=65 Identities=12% Similarity=0.153 Sum_probs=59.5
Q ss_pred CCCcEEEEEEcCCCCCCcceEEEeCCEEEEEec-------------ceEEEcCCCCCccCCCeeeEEE-CCCCEEEEEEe
Q psy14539 143 SCEDMLVTIQLPGEQRENVDCDLTTQHVDIRSI-------------KYRLALPLPHPVLPHLCQATWD-SDKSELKLTLR 208 (218)
Q Consensus 143 ~~e~LvV~I~LPg~~~~didLdV~e~~L~L~s~-------------~Y~L~L~LP~pVd~~~~kAkfd-~~~g~L~VTLp 208 (218)
..+.+.|.++|||++.++|++.|.++.|.|++. .|++.+.||..|+.++.+|+|. + |+|+|++|
T Consensus 5 ~~d~y~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~v~A~~~~d--GvL~I~~P 82 (83)
T cd06476 5 EDDKYQVFLDVCHFTPDEITVRTVDNLLEVSARHPQRMDRHGFVSREFTRTYILPMDVDPLLVRASLSHD--GILCIQAP 82 (83)
T ss_pred cCCeEEEEEEcCCCCHHHeEEEEECCEEEEEEEEcceecCCCEEEEEEEEEEECCCCCChhhEEEEecCC--CEEEEEec
Confidence 347899999999999999999999999999763 2789999999999999999996 8 99999999
Q ss_pred c
Q psy14539 209 L 209 (218)
Q Consensus 209 v 209 (218)
+
T Consensus 83 r 83 (83)
T cd06476 83 R 83 (83)
T ss_pred C
Confidence 5
No 12
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=99.06 E-value=5.6e-10 Score=80.82 Aligned_cols=65 Identities=22% Similarity=0.382 Sum_probs=60.1
Q ss_pred CCCcEEEEEEcCCCCCCcceEEEeCCEEEEEe-------------------cceEEEcCCCCCccCCCeeeEEECCCCEE
Q psy14539 143 SCEDMLVTIQLPGEQRENVDCDLTTQHVDIRS-------------------IKYRLALPLPHPVLPHLCQATWDSDKSEL 203 (218)
Q Consensus 143 ~~e~LvV~I~LPg~~~~didLdV~e~~L~L~s-------------------~~Y~L~L~LP~pVd~~~~kAkfd~~~g~L 203 (218)
..+.++|.|+|||+..++|++.+.++.|.|++ ..|++.+.||..|+.+.++|.|.+ |+|
T Consensus 5 ~~~~~~i~~~lpg~~~~~i~V~v~~~~l~I~g~~~~~~~~~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~a~~~~--G~L 82 (88)
T cd06464 5 TDDAYVVEADLPGFKKEDIKVEVEDGVLTISGEREEEEEEEENYLRRERSYGSFSRSFRLPEDVDPDKIKASLEN--GVL 82 (88)
T ss_pred cCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEecccccCCcEEEEEEeCcEEEEEEECCCCcCHHHcEEEEeC--CEE
Confidence 34799999999999999999999999999983 358999999999999999999999 999
Q ss_pred EEEEec
Q psy14539 204 KLTLRL 209 (218)
Q Consensus 204 ~VTLpv 209 (218)
+|++|+
T Consensus 83 ~I~~pk 88 (88)
T cd06464 83 TITLPK 88 (88)
T ss_pred EEEEcC
Confidence 999984
No 13
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=99.05 E-value=5.3e-10 Score=83.92 Aligned_cols=64 Identities=23% Similarity=0.391 Sum_probs=57.0
Q ss_pred CCCcEEEEEEcCCCCCCcceEEEeCCEEEEEec----------------------ceEEEcCCCCCccCCCeeeEEECCC
Q psy14539 143 SCEDMLVTIQLPGEQRENVDCDLTTQHVDIRSI----------------------KYRLALPLPHPVLPHLCQATWDSDK 200 (218)
Q Consensus 143 ~~e~LvV~I~LPg~~~~didLdV~e~~L~L~s~----------------------~Y~L~L~LP~pVd~~~~kAkfd~~~ 200 (218)
..+.++|.++|||++.++|+|.+.++.|.|++. .|.+.+.|| .|+.+.++|+|++
T Consensus 8 ~~~~~~i~~~lPGv~~edi~v~~~~~~L~I~g~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~lp-~v~~~~i~A~~~d-- 84 (93)
T cd06471 8 TDDEYIVEADLPGFKKEDIKLDYKDGYLTISAKRDESKDEKDKKGNYIRRERYYGSFSRSFYLP-NVDEEEIKAKYEN-- 84 (93)
T ss_pred cCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEccccccccccCCEEEEeeeccEEEEEEECC-CCCHHHCEEEEEC--
Confidence 347999999999999999999999999999541 367789999 7999999999988
Q ss_pred CEEEEEEec
Q psy14539 201 SELKLTLRL 209 (218)
Q Consensus 201 g~L~VTLpv 209 (218)
|+|+|+||+
T Consensus 85 GvL~I~lPK 93 (93)
T cd06471 85 GVLKITLPK 93 (93)
T ss_pred CEEEEEEcC
Confidence 999999995
No 14
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=99.03 E-value=8.5e-10 Score=82.61 Aligned_cols=64 Identities=11% Similarity=0.251 Sum_probs=59.7
Q ss_pred CCCcEEEEEEcCCCCCCcceEEEeCCEEEEEec----------ceEEEcCCCCCccCCCeeeEE-ECCCCEEEEEEe
Q psy14539 143 SCEDMLVTIQLPGEQRENVDCDLTTQHVDIRSI----------KYRLALPLPHPVLPHLCQATW-DSDKSELKLTLR 208 (218)
Q Consensus 143 ~~e~LvV~I~LPg~~~~didLdV~e~~L~L~s~----------~Y~L~L~LP~pVd~~~~kAkf-d~~~g~L~VTLp 208 (218)
..+.++|.++|||+++++|++.|.++.|.|++. .|.+.+.||..||+++++|+| .+ |+|+|+++
T Consensus 6 ~~~~~~v~~dlpG~~pedi~V~v~~~~L~I~ger~~~~~~~~g~F~R~~~LP~~vd~e~v~A~l~~~--GvL~I~~~ 80 (81)
T cd06479 6 LGDTYQFAVDVSDFSPEDIIVTTSNNQIEVHAEKLASDGTVMNTFTHKCQLPEDVDPTSVSSSLGED--GTLTIKAR 80 (81)
T ss_pred cCCeEEEEEECCCCCHHHeEEEEECCEEEEEEEEeccCCCEEEEEEEEEECCCCcCHHHeEEEecCC--CEEEEEec
Confidence 558999999999999999999999999999874 588999999999999999997 88 99999997
No 15
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=99.01 E-value=9.9e-10 Score=82.84 Aligned_cols=65 Identities=14% Similarity=0.229 Sum_probs=59.2
Q ss_pred CCCcEEEEEEcCCCCCCcceEEEeCCEEEEEec-----------------ceEEEcCCCCCccCCCeeeEE-ECCCCEEE
Q psy14539 143 SCEDMLVTIQLPGEQRENVDCDLTTQHVDIRSI-----------------KYRLALPLPHPVLPHLCQATW-DSDKSELK 204 (218)
Q Consensus 143 ~~e~LvV~I~LPg~~~~didLdV~e~~L~L~s~-----------------~Y~L~L~LP~pVd~~~~kAkf-d~~~g~L~ 204 (218)
..+.++|+++|||+++++|+|.|.++.|.|++. .|++.+.||..|+.+.++|.| .+ |+|+
T Consensus 5 ~~d~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~F~R~~~LP~~Vd~~~i~A~~~~d--GvL~ 82 (87)
T cd06481 5 GKEGFSLKLDVRGFSPEDLSVRVDGRKLVVTGKREKKNEDEKGSFSYEYQEFVREAQLPEHVDPEAVTCSLSPS--GHLH 82 (87)
T ss_pred ccceEEEEEECCCCChHHeEEEEECCEEEEEEEEeeecccCCCcEEEEeeEEEEEEECCCCcChHHeEEEeCCC--ceEE
Confidence 447899999999999999999999999999763 277899999999999999999 78 9999
Q ss_pred EEEec
Q psy14539 205 LTLRL 209 (218)
Q Consensus 205 VTLpv 209 (218)
|++|.
T Consensus 83 I~~P~ 87 (87)
T cd06481 83 IRAPR 87 (87)
T ss_pred EEcCC
Confidence 99983
No 16
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=99.00 E-value=1.3e-09 Score=82.09 Aligned_cols=60 Identities=12% Similarity=0.302 Sum_probs=55.6
Q ss_pred CcEEEEEEcCCCCCCcceEEEeCCEEEEEe-------------------cceEEEcCCCCCccCCCeeeEEECCCCEEEE
Q psy14539 145 EDMLVTIQLPGEQRENVDCDLTTQHVDIRS-------------------IKYRLALPLPHPVLPHLCQATWDSDKSELKL 205 (218)
Q Consensus 145 e~LvV~I~LPg~~~~didLdV~e~~L~L~s-------------------~~Y~L~L~LP~pVd~~~~kAkfd~~~g~L~V 205 (218)
+.++|+++|||++.++|+|.+.++.|.|++ ..|.+.+.||..|+.. +|+|.+ |+|+|
T Consensus 11 ~~~~v~~~lPG~~kedi~v~~~~~~L~I~g~~~~~~~~~~~~~~~e~~~g~f~R~~~LP~~vd~~--~A~~~~--GvL~I 86 (90)
T cd06470 11 NNYRITLAVAGFSEDDLEIEVENNQLTVTGKKADEENEEREYLHRGIAKRAFERSFNLADHVKVK--GAELEN--GLLTI 86 (90)
T ss_pred CeEEEEEECCCCCHHHeEEEEECCEEEEEEEEcccccCCCcEEEEEEeceEEEEEEECCCCceEC--eeEEeC--CEEEE
Confidence 689999999999999999999999999984 3588999999999975 899999 99999
Q ss_pred EEe
Q psy14539 206 TLR 208 (218)
Q Consensus 206 TLp 208 (218)
+|+
T Consensus 87 ~l~ 89 (90)
T cd06470 87 DLE 89 (90)
T ss_pred EEE
Confidence 997
No 17
>PRK10743 heat shock protein IbpA; Provisional
Probab=99.00 E-value=1.2e-09 Score=89.19 Aligned_cols=63 Identities=10% Similarity=0.149 Sum_probs=57.6
Q ss_pred CCcEEEEEEcCCCCCCcceEEEeCCEEEEEec------------------ceEEEcCCCCCccCCCeeeEEECCCCEEEE
Q psy14539 144 CEDMLVTIQLPGEQRENVDCDLTTQHVDIRSI------------------KYRLALPLPHPVLPHLCQATWDSDKSELKL 205 (218)
Q Consensus 144 ~e~LvV~I~LPg~~~~didLdV~e~~L~L~s~------------------~Y~L~L~LP~pVd~~~~kAkfd~~~g~L~V 205 (218)
.+.++|+++|||+++++|+|.|.++.|+|++. .|.+.+.||..|+.+ +|+|.+ |+|+|
T Consensus 44 ~~~~~v~aelPGv~kedi~V~v~~~~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~~~LP~~Vd~~--~A~~~d--GVL~I 119 (137)
T PRK10743 44 ENHYRIAIAVAGFAESELEITAQDNLLVVKGAHADEQKERTYLYQGIAERNFERKFQLAENIHVR--GANLVN--GLLYI 119 (137)
T ss_pred CCEEEEEEECCCCCHHHeEEEEECCEEEEEEEECccccCCcEEEEEEECCEEEEEEECCCCcccC--cCEEeC--CEEEE
Confidence 47899999999999999999999999999863 377899999999998 499999 99999
Q ss_pred EEecc
Q psy14539 206 TLRLT 210 (218)
Q Consensus 206 TLpv~ 210 (218)
+||+.
T Consensus 120 ~lPK~ 124 (137)
T PRK10743 120 DLERV 124 (137)
T ss_pred EEeCC
Confidence 99985
No 18
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=98.92 E-value=3.6e-09 Score=80.29 Aligned_cols=63 Identities=14% Similarity=0.210 Sum_probs=57.3
Q ss_pred CcEEEEEEcCCCCCCcceEEEeCCEEEEEec----------------ceEEEcCCCCCccCCCeeeEEECCCCEEEEEEe
Q psy14539 145 EDMLVTIQLPGEQRENVDCDLTTQHVDIRSI----------------KYRLALPLPHPVLPHLCQATWDSDKSELKLTLR 208 (218)
Q Consensus 145 e~LvV~I~LPg~~~~didLdV~e~~L~L~s~----------------~Y~L~L~LP~pVd~~~~kAkfd~~~g~L~VTLp 208 (218)
+.++|+++|||+++++|+|.|.++.|.|++. .|++.+.||..|+.+.++|+|.+ .|+|+|.-|
T Consensus 8 ~~~~v~adlPG~~kedI~V~v~~~~L~I~ger~~~~e~~~~~er~~g~F~R~f~LP~~Vd~d~i~A~~~~-~~~l~i~~~ 86 (87)
T cd06482 8 SNVLASVDVCGFEPDQVKVKVKDGKVQVSAERENRYDCLGSKKYSYMNICKEFSLPPGVDEKDVTYSYGL-GSVVKIETP 86 (87)
T ss_pred CEEEEEEECCCCCHHHeEEEEECCEEEEEEEEecccccCCccEEEEEEEEEEEECCCCcChHHcEEEEcC-CCEEEEeeC
Confidence 7999999999999999999999999999873 25689999999999999999999 349999766
No 19
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=98.91 E-value=5.6e-09 Score=78.89 Aligned_cols=69 Identities=19% Similarity=0.419 Sum_probs=57.1
Q ss_pred CCCcEEEEEEcCCCCCCcceEEEeCCEEEEEec------------------ceEEEcCCCCCccCCCeeeEEECCCCEEE
Q psy14539 143 SCEDMLVTIQLPGEQRENVDCDLTTQHVDIRSI------------------KYRLALPLPHPVLPHLCQATWDSDKSELK 204 (218)
Q Consensus 143 ~~e~LvV~I~LPg~~~~didLdV~e~~L~L~s~------------------~Y~L~L~LP~pVd~~~~kAkfd~~~g~L~ 204 (218)
..+.+.|.++|||+..++|.|.+.++.|.|++. .|...+.||..|+.++++|+|.+ |+|+
T Consensus 5 ~~~~~~i~~~lpG~~~edi~I~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~f~r~~~lP~~vd~~~i~a~~~~--GvL~ 82 (102)
T PF00011_consen 5 DEDEYIIKVDLPGFDKEDIKIKVDDNKLVISGKRKEEEEDDRYYRSERRYGSFERSIRLPEDVDPDKIKASYEN--GVLT 82 (102)
T ss_dssp SSSEEEEEEE-TTS-GGGEEEEEETTEEEEEEEEEGEECTTCEEEE-S-SEEEEEEEE-STTB-GGG-EEEETT--SEEE
T ss_pred CCCEEEEEEECCCCChHHEEEEEecCccceeceeeeeeeeeeeeecccccceEEEEEcCCCcCCcceEEEEecC--CEEE
Confidence 347899999999999999999999999999763 37789999999999999999966 9999
Q ss_pred EEEeccccc
Q psy14539 205 LTLRLTREF 213 (218)
Q Consensus 205 VTLpv~re~ 213 (218)
|++|+.+..
T Consensus 83 I~~pk~~~~ 91 (102)
T PF00011_consen 83 ITIPKKEEE 91 (102)
T ss_dssp EEEEBSSSC
T ss_pred EEEEccccc
Confidence 999998653
No 20
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=98.90 E-value=5.5e-09 Score=78.61 Aligned_cols=64 Identities=11% Similarity=0.073 Sum_probs=58.1
Q ss_pred CCCcEEEEEEcCCCCCCcceEEEeCCEEEEEec-------------ceEEEcCCCCCccCCCeeeEE-ECCCCEEEEEEe
Q psy14539 143 SCEDMLVTIQLPGEQRENVDCDLTTQHVDIRSI-------------KYRLALPLPHPVLPHLCQATW-DSDKSELKLTLR 208 (218)
Q Consensus 143 ~~e~LvV~I~LPg~~~~didLdV~e~~L~L~s~-------------~Y~L~L~LP~pVd~~~~kAkf-d~~~g~L~VTLp 208 (218)
..+.++|+++|||+++++|+|.|.++.|.|++. .|.+.+.||..|+.+.++|+| ++ |+|+|+-+
T Consensus 5 ~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~ge~~~~~~~~~~~~r~F~R~~~LP~~Vd~~~v~A~~~~d--GvL~I~~~ 82 (83)
T cd06477 5 GKPMFQILLDVVQFRPEDIIIQVFEGWLLIKGQHGVRMDEHGFISRSFTRQYQLPDGVEHKDLSAMLCHD--GILVVETK 82 (83)
T ss_pred CCceEEEEEEcCCCCHHHeEEEEECCEEEEEEEEccccCCCCEEEEEEEEEEECCCCcchheEEEEEcCC--CEEEEEec
Confidence 347899999999999999999999999999873 377999999999999999998 67 99999865
No 21
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=98.89 E-value=6.7e-09 Score=71.92 Aligned_cols=64 Identities=23% Similarity=0.481 Sum_probs=59.6
Q ss_pred CCcEEEEEEcCCCCCCcceEEEeCCEEEEEe------------cceEEEcCCCCCccCCCeeeEEECCCCEEEEEEec
Q psy14539 144 CEDMLVTIQLPGEQRENVDCDLTTQHVDIRS------------IKYRLALPLPHPVLPHLCQATWDSDKSELKLTLRL 209 (218)
Q Consensus 144 ~e~LvV~I~LPg~~~~didLdV~e~~L~L~s------------~~Y~L~L~LP~pVd~~~~kAkfd~~~g~L~VTLpv 209 (218)
.+.+.|+|.||+...+++.+.+.++.|.|+. ..|++.+.||++|+++.++|+|.. |.|+|+||+
T Consensus 5 ~~~v~i~i~~~~~~~~~i~v~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~~~~~--~~l~i~l~K 80 (80)
T cd00298 5 DDEVVVTVDLPGVKKEDIKVEVEDNVLTISGKREEEEERERSYGEFERSFELPEDVDPEKSKASLEN--GVLEITLPK 80 (80)
T ss_pred CCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEcCCCcceEeeeeEEEEEECCCCcCHHHCEEEEEC--CEEEEEEcC
Confidence 4789999999999999999999999999983 479999999999999999999999 999999984
No 22
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=98.70 E-value=1.3e-07 Score=67.32 Aligned_cols=68 Identities=19% Similarity=0.342 Sum_probs=62.1
Q ss_pred CCCcEEEEEEcCCCCCCcceEEEeCCEEEEEe-----cceEEEcCCCCCccCCCeeeEEECCCCEEEEEEecccc
Q psy14539 143 SCEDMLVTIQLPGEQRENVDCDLTTQHVDIRS-----IKYRLALPLPHPVLPHLCQATWDSDKSELKLTLRLTRE 212 (218)
Q Consensus 143 ~~e~LvV~I~LPg~~~~didLdV~e~~L~L~s-----~~Y~L~L~LP~pVd~~~~kAkfd~~~g~L~VTLpv~re 212 (218)
..+.+.|.|.+|+...++++++++++.|.|+. ..|.+.+.|+++|+++.+++++.. +.|+|+|+++.+
T Consensus 4 ~~~~v~i~v~~~~~~~~~~~v~~~~~~l~i~~~~~~~~~~~~~~~L~~~I~~~~s~~~~~~--~~l~i~L~K~~~ 76 (84)
T cd06463 4 TLDEVTITIPLKDVTKKDVKVEFTPKSLTVSVKGGGGKEYLLEGELFGPIDPEESKWTVED--RKIEITLKKKEP 76 (84)
T ss_pred cccEEEEEEEcCCCCccceEEEEecCEEEEEeeCCCCCceEEeeEccCccchhhcEEEEeC--CEEEEEEEECCC
Confidence 34789999999999999999999999999985 579999999999999999999987 999999998765
No 23
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=98.36 E-value=2.3e-06 Score=65.65 Aligned_cols=71 Identities=17% Similarity=0.237 Sum_probs=63.7
Q ss_pred CCCCCCCCCcEEEEEEcCCCCCCcceEEEeCCEEEEEec-------------ceEEEcCCCCCccCCCeeeEEECCCCEE
Q psy14539 137 KTPSSVSCEDMLVTIQLPGEQRENVDCDLTTQHVDIRSI-------------KYRLALPLPHPVLPHLCQATWDSDKSEL 203 (218)
Q Consensus 137 k~Pss~~~e~LvV~I~LPg~~~~didLdV~e~~L~L~s~-------------~Y~L~L~LP~pVd~~~~kAkfd~~~g~L 203 (218)
+.|.+..-+.+.|.+++-|.+.+||++.|.++.|.|++. .|.+.+.||..||.+.++|.+.. .|+|
T Consensus 7 ~~~~~~~~~~f~v~ldv~gF~pEDL~Vkv~~~~L~V~Gkh~~~~~e~g~~~r~F~R~~~LP~~Vd~~~v~s~l~~-dGvL 85 (91)
T cd06480 7 RNPPPNSSEPWKVCVNVHSFKPEELTVKTKDGFVEVSGKHEEQQKEGGIVSKNFTKKIQLPPEVDPVTVFASLSP-EGLL 85 (91)
T ss_pred cCCCCCCCCcEEEEEEeCCCCHHHcEEEEECCEEEEEEEECcccCCCCEEEEEEEEEEECCCCCCchhEEEEeCC-CCeE
Confidence 456667889999999999999999999999999999763 37899999999999999999993 3999
Q ss_pred EEEEe
Q psy14539 204 KLTLR 208 (218)
Q Consensus 204 ~VTLp 208 (218)
+|++|
T Consensus 86 ~IeaP 90 (91)
T cd06480 86 IIEAP 90 (91)
T ss_pred EEEcC
Confidence 99988
No 24
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1). Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug
Probab=98.33 E-value=4e-06 Score=60.86 Aligned_cols=68 Identities=21% Similarity=0.341 Sum_probs=60.0
Q ss_pred CCCcEEEEEEcCCCCCCcceEEEeCCEEEEEe-----cceEEEcCCCCCccCCCeeeEEECCCCEEEEEEecccc
Q psy14539 143 SCEDMLVTIQLPGEQRENVDCDLTTQHVDIRS-----IKYRLALPLPHPVLPHLCQATWDSDKSELKLTLRLTRE 212 (218)
Q Consensus 143 ~~e~LvV~I~LPg~~~~didLdV~e~~L~L~s-----~~Y~L~L~LP~pVd~~~~kAkfd~~~g~L~VTLpv~re 212 (218)
..+.+.|.|.+|++..+++.+.++++.|.|+. ..|.+.+.|.++|+++.+++++.. +.|+|+|.+...
T Consensus 5 t~~~v~i~v~~~~~~~~~v~v~~~~~~l~i~~~~~~~~~~~~~~~L~~~I~~~~s~~~~~~--~~vei~L~K~~~ 77 (84)
T cd06466 5 TDTSVTVTIYAKNVDKEDVKVEFNEQSLSVSIILPGGSEYQLELDLFGPIDPEQSKVSVLP--TKVEITLKKAEP 77 (84)
T ss_pred cCCEEEEEEEECCCCHHHCEEEEecCEEEEEEECCCCCeEEEecccccccCchhcEEEEeC--eEEEEEEEcCCC
Confidence 44789999999999999999999999999964 269999999999999988877777 889999998753
No 25
>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown. The CS domain is sometimes found C-terminal to the CHORD domain (IPR007051 from INTERPRO) in metazoan proteins, but occurs separately from the CHORD domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains [].; PDB: 1WGV_A 2KMW_A 2O30_B 1WH0_A 1EJF_A 2RH0_B 1RL1_A 2CR0_A 1WFI_A 2XCM_D ....
Probab=97.96 E-value=8.6e-05 Score=52.39 Aligned_cols=65 Identities=20% Similarity=0.281 Sum_probs=54.9
Q ss_pred CCCcEEEEEEcCCCC--CCcceEEEeCCEEEEEec-----ceEEEcCCCCCccCCCeeeEEECCCCEEEEEEec
Q psy14539 143 SCEDMLVTIQLPGEQ--RENVDCDLTTQHVDIRSI-----KYRLALPLPHPVLPHLCQATWDSDKSELKLTLRL 209 (218)
Q Consensus 143 ~~e~LvV~I~LPg~~--~~didLdV~e~~L~L~s~-----~Y~L~L~LP~pVd~~~~kAkfd~~~g~L~VTLpv 209 (218)
..+.+.|.|.+++.. .+++.++++++.|.++.. .|.+.+.|.++|+++.++.+... +.|.|+|.+
T Consensus 8 t~~~V~v~i~~~~~~~~~~dv~v~~~~~~l~v~~~~~~~~~~~~~~~L~~~I~~~~s~~~~~~--~~i~i~L~K 79 (79)
T PF04969_consen 8 TDDEVTVTIPVKPVDISKEDVKVDFTDTSLSVSIKSGDGKEYLLEGELFGEIDPDESTWKVKD--NKIEITLKK 79 (79)
T ss_dssp ESSEEEEEEE-TTTTSSGGGEEEEEETTEEEEEEEETTSCEEEEEEEBSS-BECCCEEEEEET--TEEEEEEEB
T ss_pred CCCEEEEEEEEcCCCCChHHeEEEEEeeEEEEEEEccCCceEEEEEEEeeeEcchhcEEEEEC--CEEEEEEEC
Confidence 347899999996654 999999999999999853 79999999999999999888888 799999864
No 26
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [].
Probab=97.93 E-value=5.3e-05 Score=64.71 Aligned_cols=64 Identities=31% Similarity=0.577 Sum_probs=52.8
Q ss_pred cEEEEEEcCCCCCCc-ceEEEe--CCEEEEEe-cceEEEcCCCCCccCCCeeeEEECCCCEEEEEEecccc
Q psy14539 146 DMLVTIQLPGEQREN-VDCDLT--TQHVDIRS-IKYRLALPLPHPVLPHLCQATWDSDKSELKLTLRLTRE 212 (218)
Q Consensus 146 ~LvV~I~LPg~~~~d-idLdV~--e~~L~L~s-~~Y~L~L~LP~pVd~~~~kAkfd~~~g~L~VTLpv~re 212 (218)
+++|.++|||+...+ |++.|. ...|.++. .+|.-++.||.+ ..+..+|.|+| |+|+|.|....+
T Consensus 103 e~~VvAdLPGVs~dd~idV~l~~d~~~L~i~~~~~~~krv~L~~~-~~e~~~~t~nN--gILEIri~~~~~ 170 (177)
T PF05455_consen 103 ELVVVADLPGVSDDDAIDVTLDDDEGALTIRVGEKYLKRVALPWP-DPEITSATFNN--GILEIRIRRTEE 170 (177)
T ss_pred cEEEEEeCCCCCcccceeeEeecCCceEEEecCCceEeeEecCCC-ccceeeEEEeC--ceEEEEEeecCC
Confidence 799999999998666 777776 66666664 478899999999 57888999999 999999986644
No 27
>KOG4356|consensus
Probab=97.73 E-value=6e-06 Score=75.84 Aligned_cols=70 Identities=20% Similarity=0.333 Sum_probs=65.9
Q ss_pred CCCCcEEEEEEcCCCC-CCcceEEEeCCEEEEEec-c-eEEEcCCCCCccCCCeeeEEECCCCEEEEEEeccc
Q psy14539 142 VSCEDMLVTIQLPGEQ-RENVDCDLTTQHVDIRSI-K-YRLALPLPHPVLPHLCQATWDSDKSELKLTLRLTR 211 (218)
Q Consensus 142 ~~~e~LvV~I~LPg~~-~~didLdV~e~~L~L~s~-~-Y~L~L~LP~pVd~~~~kAkfd~~~g~L~VTLpv~r 211 (218)
..+..+.++|+||+.+ +..+.|.|+++++.+.+. + |+|.+++|+-++.+++.|.|+..+..|.||||+.|
T Consensus 237 e~p~~i~~e~~lp~~n~~~~~sl~v~e~ri~i~~~~~~y~l~~~~~~~~~~~~~~a~Fd~~~~al~i~~P~~~ 309 (310)
T KOG4356|consen 237 EAPDEIEAEIDLPNYNSMQEFSLLVGEDRIVIETRKQGYRLNLNIPYIIDQDRAPALFDKTTKALHITIPVVR 309 (310)
T ss_pred cCcchhhhhhhcccchhhhccccccCCcceEeccCccceeeccccccccCcccchhhHHHHHHhhheeccccC
Confidence 4678999999999999 999999999999999875 4 99999999999999999999999999999999986
No 28
>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins. hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.
Probab=97.58 E-value=0.00046 Score=53.17 Aligned_cols=65 Identities=17% Similarity=0.335 Sum_probs=57.3
Q ss_pred CCCcEEEEEEcCCCCCCcceEEEeCCEEEEEec------ceEEEcCCCCCccCCCeeeEEECCCCEEEEEEeccc
Q psy14539 143 SCEDMLVTIQLPGEQRENVDCDLTTQHVDIRSI------KYRLALPLPHPVLPHLCQATWDSDKSELKLTLRLTR 211 (218)
Q Consensus 143 ~~e~LvV~I~LPg~~~~didLdV~e~~L~L~s~------~Y~L~L~LP~pVd~~~~kAkfd~~~g~L~VTLpv~r 211 (218)
..+.+.|+|.+|++ +++.++++++.|.|... .|++.+.|.++|+++.++.++.. +.++|+|.+..
T Consensus 8 t~~~V~i~i~~~~~--~~~~V~~~~~~l~v~~~~~~~~~~y~~~~~L~~~I~pe~s~~~v~~--~kveI~L~K~~ 78 (108)
T cd06465 8 RSDVVYLTIELPDA--KDPKIKLEPTSLSFKAKGGGGGKKYEFDLEFYKEIDPEESKYKVTG--RQIEFVLRKKE 78 (108)
T ss_pred CCCEEEEEEEeCCC--CCcEEEEECCEEEEEEEcCCCCeeEEEEeEhhhhccccccEEEecC--CeEEEEEEECC
Confidence 44789999999998 88999999999999752 39999999999999988888776 88999999875
No 29
>KOG0710|consensus
Probab=97.56 E-value=0.00012 Score=62.96 Aligned_cols=69 Identities=17% Similarity=0.288 Sum_probs=61.7
Q ss_pred CCCCcEEEEEEcCCCCCCcceEEEeCC-EEEEEec----------------------ceEEEcCCCCCccCCCeeeEEEC
Q psy14539 142 VSCEDMLVTIQLPGEQRENVDCDLTTQ-HVDIRSI----------------------KYRLALPLPHPVLPHLCQATWDS 198 (218)
Q Consensus 142 ~~~e~LvV~I~LPg~~~~didLdV~e~-~L~L~s~----------------------~Y~L~L~LP~pVd~~~~kAkfd~ 198 (218)
..++.+++.++|||+...++.+++.+. .|.+++. .|...+.||..|+.+..+|.|.+
T Consensus 91 e~~~~~~~~~~~Pgl~ke~iKv~~~~~~~l~isGe~~~e~e~~~~~~~~~~~E~~~g~F~r~~~lPenv~~d~ikA~~~n 170 (196)
T KOG0710|consen 91 ESPDAHEFKVDLPGLKKEDIKVEVEDEKVLTISGERKKEEEESGSGKKWKRVERKLGKFKRRFELPENVDVDEIKAEMEN 170 (196)
T ss_pred cCCCceEEEeeCCCCCchhceEEeccCcEEEEecccccccccccCCccceeehhcccceEeeecCCccccHHHHHHHhhC
Confidence 366899999999999999999999999 5888652 26789999999999999999999
Q ss_pred CCCEEEEEEecccc
Q psy14539 199 DKSELKLTLRLTRE 212 (218)
Q Consensus 199 ~~g~L~VTLpv~re 212 (218)
|+|+|++|....
T Consensus 171 --GVL~VvvpK~~~ 182 (196)
T KOG0710|consen 171 --GVLTVVVPKLEP 182 (196)
T ss_pred --CeEEEEEecccc
Confidence 999999998765
No 30
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=97.54 E-value=0.00081 Score=48.97 Aligned_cols=67 Identities=24% Similarity=0.353 Sum_probs=56.7
Q ss_pred CCcEEEEEEcCC-CCCCcceEEEeCCEEEEEec--ceEEEcCCCCCccCCCeeeEEECCC-CEEEEEEecccc
Q psy14539 144 CEDMLVTIQLPG-EQRENVDCDLTTQHVDIRSI--KYRLALPLPHPVLPHLCQATWDSDK-SELKLTLRLTRE 212 (218)
Q Consensus 144 ~e~LvV~I~LPg-~~~~didLdV~e~~L~L~s~--~Y~L~L~LP~pVd~~~~kAkfd~~~-g~L~VTLpv~re 212 (218)
.+.+.|.|.+|. ++.+++.++++++.|.|+.. .|.+...|.++|+++.++ |.... ..++|+|+++.+
T Consensus 7 ~~~V~i~i~~~~~~~~~dv~v~~~~~~l~v~~~~~~~~l~~~L~~~I~~~~s~--w~~~~~~~v~i~L~K~~~ 77 (85)
T cd06467 7 LDEVTVTIPLPEGTKSKDVKVEITPKHLKVGVKGGEPLLDGELYAKVKVDEST--WTLEDGKLLEITLEKRNE 77 (85)
T ss_pred CCEEEEEEECCCCCcceeEEEEEEcCEEEEEECCCCceEcCcccCceeEcCCE--EEEeCCCEEEEEEEECCC
Confidence 468999999985 66999999999999999864 688999999999999765 55555 789999998764
No 31
>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins. hSgt1 is a co-chaperone which has been shown to be elevated in HEp-2 cells as a result of stress conditions such as heat shock. It interacts with the heat shock proteins (HSPs) Hsp70 and Hsp90, and it expression pattern is synchronized with these two Hsps. The interaction with HSP90 has been shown to involve the hSgt1_CS domain, and appears to be required for correct kinetochore assembly and efficient cell division. Some proteins in this subgroup contain a tetratricopeptide repeat (TPR) HSP-binding domain N-terminal to this CS domain, and most proteins in this subgroup contain a Sgt1-specific (SGS) domain C-terminal to the CS domain. The SGS domain interacts with some S100 family proteins. Studies suggest that S100A6 modulates in a Ca2+ dependent manner the interactions of hSgt1 with Hsp90 and Hsp70. The yeast Sgt1 CS domain is not found in this subgroup.
Probab=97.34 E-value=0.0016 Score=47.80 Aligned_cols=65 Identities=22% Similarity=0.397 Sum_probs=56.5
Q ss_pred CCcEEEEEEcCCCCCCcceEEEeCCEEEEEe-----cceEEEcCCCCCccCCCeeeEEECCCCEEEEEEecc
Q psy14539 144 CEDMLVTIQLPGEQRENVDCDLTTQHVDIRS-----IKYRLALPLPHPVLPHLCQATWDSDKSELKLTLRLT 210 (218)
Q Consensus 144 ~e~LvV~I~LPg~~~~didLdV~e~~L~L~s-----~~Y~L~L~LP~pVd~~~~kAkfd~~~g~L~VTLpv~ 210 (218)
.+.+.|.|.++++..+++.+++.++.|.++. ..|.+.+.|-++|++++++.+--. +.++|+|.+.
T Consensus 6 ~~~V~iti~~k~~~~~~~~v~~~~~~l~~~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~--~kiei~L~K~ 75 (84)
T cd06489 6 ESQVVITILIKNVKPEDVSVEFEKRELSATVKLPSGNDYSLKLHLLHPIVPEQSSYKILS--TKIEIKLKKT 75 (84)
T ss_pred CCEEEEEEEECCCCHHHCEEEEeCCEEEEEEECCCCCcEEEeeecCceecchhcEEEEeC--cEEEEEEEcC
Confidence 4679999999999999999999999999975 369999999999999977766655 7799999875
No 32
>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP). CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter two are components of the ubiquitin ligase that regulates beta-catenin degradation. The beta-catenin gene is an oncogene participating in tumorigenesis in many different cancers. Overexpression of CacyBP/SIP, in part through its effect on the expression of beta-catenin, inhibits the proliferation, tumorigenicity, and invasion of gastric cancer cells. CacyBP/SIP is abundant in neurons and neuroblastoma NB2a cells. An extensive re-organization of microtubules accompanies the differentiation of NB2a cells. CacyBP/SIP may contribute to NB2a cell differentiation through binding to and increasing the oligomerization of tubulin. CacyBP/SIP is also implicated in differentiation of erythroid cells, rat neonatal cardiomyocytes
Probab=97.24 E-value=0.0031 Score=46.77 Aligned_cols=68 Identities=21% Similarity=0.360 Sum_probs=58.3
Q ss_pred CCCcEEEEEEcCCCCC---CcceEEEeCCEEEEEe-----cceEEEcC-CCCCccCCCeeeEEECCCCEEEEEEecccc
Q psy14539 143 SCEDMLVTIQLPGEQR---ENVDCDLTTQHVDIRS-----IKYRLALP-LPHPVLPHLCQATWDSDKSELKLTLRLTRE 212 (218)
Q Consensus 143 ~~e~LvV~I~LPg~~~---~didLdV~e~~L~L~s-----~~Y~L~L~-LP~pVd~~~~kAkfd~~~g~L~VTLpv~re 212 (218)
+.+.+.|.|.+|+... +++.++++++.|.+.. ..|.+.+. |-++|++++++.+... +.++|+|.+..+
T Consensus 9 t~~~V~i~i~~~~~~~~~~~~v~v~~~~~~l~v~~~~~~~~~~~~~~~~L~~~I~~e~s~~~~~~--~ki~i~L~K~~~ 85 (92)
T cd06468 9 SDKFVKIYITLKGVHQLPKENIQVEFTERSFELKVHDLNGKNYRFTINRLLKKIDPEKSSFKVKT--DRIVITLAKKKE 85 (92)
T ss_pred CCCEEEEEEEccCCCcCCcccEEEEecCCEEEEEEECCCCcEEEEEehHhhCccCccccEEEEeC--CEEEEEEEeCCC
Confidence 4579999999999875 9999999999999975 25888886 9999999988777666 889999998765
No 33
>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins. NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.
Probab=96.97 E-value=0.01 Score=43.97 Aligned_cols=69 Identities=20% Similarity=0.238 Sum_probs=55.3
Q ss_pred CCCcEEEEEEcC-CCCCCcceEEEeCCEEEEEec--ceEEEcCCCCCccCCCeeeEEECCCCEEEEEEecccc
Q psy14539 143 SCEDMLVTIQLP-GEQRENVDCDLTTQHVDIRSI--KYRLALPLPHPVLPHLCQATWDSDKSELKLTLRLTRE 212 (218)
Q Consensus 143 ~~e~LvV~I~LP-g~~~~didLdV~e~~L~L~s~--~Y~L~L~LP~pVd~~~~kAkfd~~~g~L~VTLpv~re 212 (218)
..+++.|.|.+| ++..++|.+.++.+.|.+... ...+...|.++|+++.+.=+... .+.|+|+|.++.+
T Consensus 6 t~~~V~v~i~~p~~~~~~dv~v~~~~~~l~v~~~~~~~~~~g~L~~~I~~d~Stw~i~~-~~~l~i~L~K~~~ 77 (85)
T cd06493 6 TEEDLTLTIRLPEDTTKEDIRIKFLPDHISIALKDQAPLLEGKLYSSIDHESSTWIIKE-NKSLEVSLIKKDE 77 (85)
T ss_pred eCCEEEEEEECCCCCChhhEEEEEecCEEEEEeCCCCeEEeCcccCcccccCcEEEEeC-CCEEEEEEEECCC
Confidence 457999999996 788999999999999999753 45688899999999876533322 3479999998764
No 34
>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis.
Probab=96.46 E-value=0.021 Score=44.72 Aligned_cols=65 Identities=12% Similarity=0.193 Sum_probs=53.4
Q ss_pred CCCcEEEEEEcCCCCCCcceEEEeCCEEEEEe-----cceEEEcCCCCCccCCCeeeEEECCCCEEEEEEeccc
Q psy14539 143 SCEDMLVTIQLPGEQRENVDCDLTTQHVDIRS-----IKYRLALPLPHPVLPHLCQATWDSDKSELKLTLRLTR 211 (218)
Q Consensus 143 ~~e~LvV~I~LPg~~~~didLdV~e~~L~L~s-----~~Y~L~L~LP~pVd~~~~kAkfd~~~g~L~VTLpv~r 211 (218)
+.+.+.|+|.+|+ +.++.++++++.|.+++ ..|.+.|.|=.+|+++.++-+ .....++|.|..+.
T Consensus 9 r~~~V~ltI~v~d--~~d~~v~l~~~~l~f~~~~~~g~~y~~~l~l~~~I~pe~Sk~~--v~~r~ve~~L~K~~ 78 (106)
T cd00237 9 RRDYVFIEFCVED--SKDVKVDFEKSKLTFSCLNGDNVKIYNEIELYDRVDPNDSKHK--RTDRSILCCLRKGK 78 (106)
T ss_pred CCCEEEEEEEeCC--CCCcEEEEecCEEEEEEECCCCcEEEEEEEeecccCcccCeEE--eCCceEEEEEEeCC
Confidence 3468999999998 68999999999999986 259999999999999866555 44477888888764
No 35
>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins. Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta subunits. Melusin is a muscle-specific protein expressed in skeletal and cardiac muscles but not in smooth muscle or other tissues. It is needed for heart hypertrophy following mechanical overload. The integrin-binding portion of this domain appears to be sequestered in the full length melusin protein, Ca2+ may modulate the protein's conformation exposing this binding site. This group includes Chordc1, also known as Chp-1, which is conserved from vertebrates to humans. Mammalian Chordc1 interacts with the heat shock protein (HSP) Hsp90 and is implicated in circadian and/or homeostatic mechanisms in the brain. The N-terminal portions of proteins belonging to this group contain two cysteine and histidine rich domain (C
Probab=96.40 E-value=0.022 Score=42.44 Aligned_cols=66 Identities=11% Similarity=0.124 Sum_probs=55.2
Q ss_pred CCcEEEEEEcCCCCCCcceEEEeCCEEEEEe-----cceEEEcCCCCCccCCCeeeEEECCCCEEEEEEeccc
Q psy14539 144 CEDMLVTIQLPGEQRENVDCDLTTQHVDIRS-----IKYRLALPLPHPVLPHLCQATWDSDKSELKLTLRLTR 211 (218)
Q Consensus 144 ~e~LvV~I~LPg~~~~didLdV~e~~L~L~s-----~~Y~L~L~LP~pVd~~~~kAkfd~~~g~L~VTLpv~r 211 (218)
.+.+.|.|.+.++..+++.+.++++.|.++. ..|.+.+.|-++|+++.. +|......++|+|..+.
T Consensus 9 ~~~V~ItI~~k~~~~~~~~v~~~~~~l~v~~~~~~~~~y~~~l~L~~~I~~~~s--~~~v~~~kvei~L~K~~ 79 (87)
T cd06488 9 GSHVVVSVYAKNSNPELSVVEANSTVLTIHIVFEGNKEFQLDIELWGVIDVEKS--SVNMLPTKVEIKLRKAE 79 (87)
T ss_pred CCEEEEEEEECcCCccceEEEecCCEEEEEEECCCCceEEEEeeccceEChhHc--EEEecCcEEEEEEEeCC
Confidence 3679999999999999999999999987642 269999999999999874 45566699999998764
No 36
>KOG3591|consensus
Probab=95.94 E-value=0.038 Score=46.97 Aligned_cols=68 Identities=13% Similarity=0.183 Sum_probs=60.8
Q ss_pred CCCcEEEEEEcCCCCCCcceEEEeCCEEEEEec-------------ceEEEcCCCCCccCCCeeeEEECCCCEEEEEEec
Q psy14539 143 SCEDMLVTIQLPGEQRENVDCDLTTQHVDIRSI-------------KYRLALPLPHPVLPHLCQATWDSDKSELKLTLRL 209 (218)
Q Consensus 143 ~~e~LvV~I~LPg~~~~didLdV~e~~L~L~s~-------------~Y~L~L~LP~pVd~~~~kAkfd~~~g~L~VTLpv 209 (218)
.-+.+-|.++.-..+.++|.+.+.++.|.|.+. .|..+..||.-||++.+++...+ .|+|+|+.|.
T Consensus 70 ~~~~F~V~lDV~~F~PeEl~Vk~~~~~l~V~gkHeer~d~~G~v~R~F~R~y~LP~~vdp~~V~S~LS~-dGvLtI~ap~ 148 (173)
T KOG3591|consen 70 DKDKFEVNLDVHQFKPEELKVKTDDNTLEVEGKHEEKEDEHGYVSRSFVRKYLLPEDVDPTSVTSTLSS-DGVLTIEAPK 148 (173)
T ss_pred CCCcEEEEEEcccCcccceEEEeCCCEEEEEeeeccccCCCCeEEEEEEEEecCCCCCChhheEEeeCC-CceEEEEccC
Confidence 457899999999999999999999999999774 38899999999999999999877 7999999887
Q ss_pred cc
Q psy14539 210 TR 211 (218)
Q Consensus 210 ~r 211 (218)
..
T Consensus 149 ~~ 150 (173)
T KOG3591|consen 149 PP 150 (173)
T ss_pred CC
Confidence 64
No 37
>KOG3247|consensus
Probab=95.66 E-value=0.0052 Score=58.74 Aligned_cols=66 Identities=18% Similarity=0.145 Sum_probs=61.5
Q ss_pred CcEEEEEEcCCCCCCcceEEEeCCEEEEEecceEEEcCCCCCccC-CCeeeEEECCCCEEEEEEecc
Q psy14539 145 EDMLVTIQLPGEQRENVDCDLTTQHVDIRSIKYRLALPLPHPVLP-HLCQATWDSDKSELKLTLRLT 210 (218)
Q Consensus 145 e~LvV~I~LPg~~~~didLdV~e~~L~L~s~~Y~L~L~LP~pVd~-~~~kAkfd~~~g~L~VTLpv~ 210 (218)
+.+.++|..|..+++.+++++.+..+.+.+++|+|++.+|+.|.. ..+.|+|+.+.|...|.+|..
T Consensus 13 e~~~L~I~~p~~~a~~le~~a~~nm~~f~~~pyflrl~~p~~~~~d~~~n~s~d~kd~~~~vK~~K~ 79 (466)
T KOG3247|consen 13 EFCTLIIPRPLNQASKLEIDAAANMASFSAGPYFLRLAGPGMVEDDARPNASYDAKDGYAHVKVPKF 79 (466)
T ss_pred ceEEEEeeccccchhccchhhHhhhhhhccchhHHhhcCcchhhhhccccCccccccceeEEeecCC
Confidence 688999999988899999999999999999999999999999875 888999999999999999874
No 38
>KOG1309|consensus
Probab=95.62 E-value=0.037 Score=47.87 Aligned_cols=68 Identities=21% Similarity=0.326 Sum_probs=58.2
Q ss_pred CCCcEEEEEEcCCCCCCcceEEEeCCEEEEEec-----ceEEEcCCCCCccCCCeeeEEECCCCEEEEEEecccc
Q psy14539 143 SCEDMLVTIQLPGEQRENVDCDLTTQHVDIRSI-----KYRLALPLPHPVLPHLCQATWDSDKSELKLTLRLTRE 212 (218)
Q Consensus 143 ~~e~LvV~I~LPg~~~~didLdV~e~~L~L~s~-----~Y~L~L~LP~pVd~~~~kAkfd~~~g~L~VTLpv~re 212 (218)
....++|.|..+++...++.|+++++.|.+... -|.|.+.|=|+|.++..+-+--+ ..++|||+..+.
T Consensus 11 t~~~vvIti~~k~v~~~~v~v~~s~~~l~~~~~~~~g~~~~l~~~L~~~I~pe~~s~k~~s--tKVEI~L~K~~~ 83 (196)
T KOG1309|consen 11 TETSVVITIFAKNVPKEDVNVEISENTLSIVIQLPSGSEYNLQLKLYHEIIPEKSSFKVFS--TKVEITLAKAEI 83 (196)
T ss_pred CCceEEEEEEecCCCccceeEEeecceEEEEEecCCchhhhhhHHhcccccccceeeEeee--eeEEEEeccccc
Confidence 446899999999999999999999999988543 59999999999999987766555 789999998654
No 39
>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation.
Probab=95.53 E-value=0.16 Score=38.17 Aligned_cols=68 Identities=10% Similarity=0.144 Sum_probs=55.6
Q ss_pred CCcEEEEEEcCC---CCCCcceEEEeCCEEEEEec--ceEEEcCCCCCccCCCeeeEEECCC-CEEEEEEeccccc
Q psy14539 144 CEDMLVTIQLPG---EQRENVDCDLTTQHVDIRSI--KYRLALPLPHPVLPHLCQATWDSDK-SELKLTLRLTREF 213 (218)
Q Consensus 144 ~e~LvV~I~LPg---~~~~didLdV~e~~L~L~s~--~Y~L~L~LP~pVd~~~~kAkfd~~~-g~L~VTLpv~re~ 213 (218)
.+++.|+|.+|. ++.+++.++++.+.|.+... .+.+.-.|.++|+.+.+. |.-+. +.|.|+|-+.++.
T Consensus 7 ~~ev~v~v~l~~~~~~~~kdv~v~i~~~~l~v~~~g~~~~i~G~L~~~V~~des~--Wtled~~~l~i~L~K~~~~ 80 (87)
T cd06492 7 LSEVELKVPFKVSFRLKGKDVVVDIQRKHLKVGLKGQPPIIDGELYNEVKVEESS--WLIEDGKVVTVNLEKINKM 80 (87)
T ss_pred cCEEEEEEECCCCCCccceEEEEEEecCEEEEEECCCceEEeCcccCcccccccE--EEEeCCCEEEEEEEECCCC
Confidence 467899999975 67999999999999999864 588999999999998654 55444 5899999988543
No 40
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=94.38 E-value=0.18 Score=46.48 Aligned_cols=66 Identities=24% Similarity=0.347 Sum_probs=57.3
Q ss_pred CCcEEEEEEcCCCCCCcceEEEeCCEEEEEe-----cceEEEcCCCCCccCCCeeeEEECCCCEEEEEEeccc
Q psy14539 144 CEDMLVTIQLPGEQRENVDCDLTTQHVDIRS-----IKYRLALPLPHPVLPHLCQATWDSDKSELKLTLRLTR 211 (218)
Q Consensus 144 ~e~LvV~I~LPg~~~~didLdV~e~~L~L~s-----~~Y~L~L~LP~pVd~~~~kAkfd~~~g~L~VTLpv~r 211 (218)
...++|.|.+.|+..+++.+++.++.|.|+. ..|.+.+.|-++|+++.++-+--. ..++|+|....
T Consensus 165 ~~~V~i~i~~k~~~~~~~~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~--~Kiei~l~K~~ 235 (356)
T PLN03088 165 PEEVVVTVFAKGVPAENVNVDFGEQILSVVIEVPGEDAYHLQPRLFGKIIPDKCKYEVLS--TKIEIRLAKAE 235 (356)
T ss_pred CCEEEEEEEecCCChHHcEEEeecCEEEEEEecCCCcceeecccccccccccccEEEEec--ceEEEEEecCC
Confidence 3579999999999999999999999998874 269999999999999988877766 68999997664
No 41
>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins. NCB5OR is widely expressed in human organs and tissues and is localized in the ER (endoplasmic reticulum). It appears to play a critical role in maintaining viable pancreatic beta cells. Mice homozygous for a targeted knockout (KO) of the gene encoding NCB5OR develop an early-onset nonautoimmune diabetes phenotype with a non-inflammatory beta-cell deficiency. The role of NCB5OR in beta cells may be in maintaining or regulating their redox status. Proteins in this group in addition contain an N-terminal cytochrome b5 domain and a C-terminal cytochrome b5 oxidoreductase domain. The gene encoding NCB5OR has been considered as a positional candidate for type II diabetes and other diabetes subtypes related to B-cell dysfunction, however variation in its coding region does not appear not to be a major contributor to the pathogenesis of these diseases.
Probab=94.38 E-value=0.4 Score=35.81 Aligned_cols=66 Identities=14% Similarity=0.203 Sum_probs=52.2
Q ss_pred CcEEEEEEcCCCC--CCcceEEEeCCEEEEEe----cceEEEcCCCCCccCCCeeeEEECCCCEEEEEEeccc
Q psy14539 145 EDMLVTIQLPGEQ--RENVDCDLTTQHVDIRS----IKYRLALPLPHPVLPHLCQATWDSDKSELKLTLRLTR 211 (218)
Q Consensus 145 e~LvV~I~LPg~~--~~didLdV~e~~L~L~s----~~Y~L~L~LP~pVd~~~~kAkfd~~~g~L~VTLpv~r 211 (218)
..++|.|...+.. ...+.++..++.|.++- .-|.+.++|=++|+++. +.++....+.++|+|++..
T Consensus 8 ~~Vtitiy~K~~~~~~~~v~v~~~~~~l~v~~~~~~~~~~~~~~L~~~I~~~~-~~~~~~~~~KVEI~L~K~e 79 (87)
T cd06490 8 SEVTIVVYTKSKGNPADIVIVDDQQRELRVEIILGDKSYLLHLDLSNEVQWPC-EVRISTETGKIELVLKKKE 79 (87)
T ss_pred CEEEEEEEEcccCCCCccEEEECCCCEEEEEEECCCceEEEeeeccccCCCCc-EEEEcccCceEEEEEEcCC
Confidence 5789999988654 55556766887888874 35899999999998776 7788876789999999764
No 42
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=93.80 E-value=0.65 Score=35.50 Aligned_cols=67 Identities=15% Similarity=0.379 Sum_probs=52.4
Q ss_pred CCcEEEEEEcCC-CCCCcceEEEeCCEEEEEec-ceEEEcCCCCCccCCCeeeEEECCCCEEEEEEeccc
Q psy14539 144 CEDMLVTIQLPG-EQRENVDCDLTTQHVDIRSI-KYRLALPLPHPVLPHLCQATWDSDKSELKLTLRLTR 211 (218)
Q Consensus 144 ~e~LvV~I~LPg-~~~~didLdV~e~~L~L~s~-~Y~L~L~LP~pVd~~~~kAkfd~~~g~L~VTLpv~r 211 (218)
.+++.|+|.||. +++++|.++++.+.|.+... .=.|.=.|..+|+++.+.=.... .++|.|+|.+..
T Consensus 14 ~~eV~v~i~lp~~~~~kdv~V~i~~~~l~V~~~g~~~l~G~L~~~I~~destWtled-~k~l~I~L~K~~ 82 (93)
T cd06494 14 MDEVFIEVNVPPGTRAKDVKCKLGSRDISLAVKGQEVLKGKLFDSVVADECTWTLED-RKLIRIVLTKSN 82 (93)
T ss_pred cCEEEEEEECCCCCceeeEEEEEEcCEEEEEECCEEEEcCcccCccCcccCEEEEEC-CcEEEEEEEeCC
Confidence 478999999985 66999999999999999853 22566689999999876544333 345899999874
No 43
>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=93.58 E-value=0.77 Score=35.80 Aligned_cols=67 Identities=18% Similarity=0.282 Sum_probs=53.0
Q ss_pred CCcEEEEEEcCC-C-CCCcceEEEeCCEEEEEec-----ceEEEcCCCCCccCCCeeeEEECCC-CEEEEEEecccc
Q psy14539 144 CEDMLVTIQLPG-E-QRENVDCDLTTQHVDIRSI-----KYRLALPLPHPVLPHLCQATWDSDK-SELKLTLRLTRE 212 (218)
Q Consensus 144 ~e~LvV~I~LPg-~-~~~didLdV~e~~L~L~s~-----~Y~L~L~LP~pVd~~~~kAkfd~~~-g~L~VTLpv~re 212 (218)
-+++.|+|.||. + +++++.++++.+.|.+... .=.|.=.|.++|+.+.+. |.-+. ..|.|+|-+.++
T Consensus 13 l~eV~V~i~lp~~~~~~kdv~v~i~~~~l~v~~~~~~~~~~~i~G~L~~~V~~des~--Wtled~~~l~I~L~K~~~ 87 (102)
T cd06495 13 YTDVEVRVPVPKDVVKGRQVSVDLQSSSIRVSVRDGGGEKVLMEGEFTHKINTENSL--WSLEPGKCVLLSLSKCSE 87 (102)
T ss_pred CCeEEEEEECCCCCccceEEEEEEEcCEEEEEEecCCCCceEEeCcccCcccCccce--EEEeCCCEEEEEEEECCC
Confidence 478999999996 3 5899999999999999752 235888999999998654 55433 568999988754
No 44
>KOG3158|consensus
Probab=47.26 E-value=46 Score=28.82 Aligned_cols=65 Identities=12% Similarity=0.203 Sum_probs=47.2
Q ss_pred CCcEEEEEEcCCCCCCcceEEEeCCEEEEEec------ceEEEcCCCCCccCCCeeeEEECCCCEEEEEEeccccc
Q psy14539 144 CEDMLVTIQLPGEQRENVDCDLTTQHVDIRSI------KYRLALPLPHPVLPHLCQATWDSDKSELKLTLRLTREF 213 (218)
Q Consensus 144 ~e~LvV~I~LPg~~~~didLdV~e~~L~L~s~------~Y~L~L~LP~pVd~~~~kAkfd~~~g~L~VTLpv~re~ 213 (218)
-+.+.++|.++.. .+..+.+....|++++. .|.+.|.|=+.|++++++-+= .+.+.++++.+.++
T Consensus 16 ~~~vyltv~Ved~--~d~~v~~e~~~l~fs~k~~~d~~~~~~~ief~~eIdpe~sk~k~---~~r~if~i~~K~e~ 86 (180)
T KOG3158|consen 16 RDLVYLTVCVEDA--KDVHVNLEPSKLTFSCKSGADNHKYENEIEFFDEIDPEKSKHKR---TSRSIFCILRKKEL 86 (180)
T ss_pred cCeEEEEEEeccC--ccceeeccccEEEEEeccCCCceeeEEeeehhhhcCHhhccccc---cceEEEEEEEcccc
Confidence 3677888877654 55667777778999864 578889999999998875432 36677776666554
No 45
>PF14913 DPCD: DPCD protein family
Probab=44.62 E-value=35 Score=29.88 Aligned_cols=65 Identities=15% Similarity=0.222 Sum_probs=48.5
Q ss_pred CcEEEEE-EcCCCC-CCcceEEEeCCEEEEEec--ceEEEcCCCCCc----cCCCeeeEEECCCCEEEEEEec
Q psy14539 145 EDMLVTI-QLPGEQ-RENVDCDLTTQHVDIRSI--KYRLALPLPHPV----LPHLCQATWDSDKSELKLTLRL 209 (218)
Q Consensus 145 e~LvV~I-~LPg~~-~~didLdV~e~~L~L~s~--~Y~L~L~LP~pV----d~~~~kAkfd~~~g~L~VTLpv 209 (218)
..+.-+| .||.=. .=.|.++=.+..+.||+. +||-+|..|.-- -.+.+..+|.....+|.|+-.+
T Consensus 96 ~~fqWRIRNLPYP~dvYsVtvd~~~r~ivvRTtNKKYyKk~~IPDl~R~~l~l~~~~ls~~h~nNTLIIsYkK 168 (194)
T PF14913_consen 96 TSFQWRIRNLPYPKDVYSVTVDEDERCIVVRTTNKKYYKKFSIPDLDRCGLPLEQSALSFAHQNNTLIISYKK 168 (194)
T ss_pred cceEEEEccCCCCccceEEEEcCCCcEEEEECcCccceeEecCCcHHhhCCCcchhhceeeeecCeEEEEecC
Confidence 4666666 477755 666667767788999974 899999999743 3477777888888999999654
No 46
>KOG2265|consensus
Probab=44.28 E-value=1.3e+02 Score=26.01 Aligned_cols=66 Identities=21% Similarity=0.428 Sum_probs=50.4
Q ss_pred CcEEEEEEcC-CC-CCCcceEEEeCCEEEEEec--ceEEEcCCCCCccCCCeeeEEECCCCEEEEEEecccc
Q psy14539 145 EDMLVTIQLP-GE-QRENVDCDLTTQHVDIRSI--KYRLALPLPHPVLPHLCQATWDSDKSELKLTLRLTRE 212 (218)
Q Consensus 145 e~LvV~I~LP-g~-~~~didLdV~e~~L~L~s~--~Y~L~L~LP~pVd~~~~kAkfd~~~g~L~VTLpv~re 212 (218)
+++-|.|.+| |+ +..+|.+.|+...|.+... .-.|.=.|.++|..+++ .|.-+.+.+.|++-.+++
T Consensus 28 ~EV~i~i~vp~~~~ksk~v~~~Iq~~hI~V~~kg~~~ildG~L~~~vk~des--~WtiEd~k~i~i~l~K~~ 97 (179)
T KOG2265|consen 28 EEVEIQIPVPPGTAKSKDVHCSIQSKHIKVGLKGQPPILDGELSHSVKVDES--TWTIEDGKMIVILLKKSN 97 (179)
T ss_pred hheEEEeecCCCCcccceEEEEeeeeEEEEecCCCCceecCccccccccccc--eEEecCCEEEEEEeeccc
Confidence 4666777665 45 5899999999999999754 46899999999999865 577766877777655543
No 47
>PF00347 Ribosomal_L6: Ribosomal protein L6; InterPro: IPR020040 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. L6 is a protein from the large (50S) subunit. In Escherichia coli, it is located in the aminoacyl-tRNA binding site of the peptidyltransferase centre, and is known to bind directly to 23S rRNA. It belongs to a family of ribosomal proteins, including L6 from bacteria, cyanelles (structures that perform similar functions to chloroplasts, but have structural and biochemical characteristics of Cyanobacteria) and mitochondria; and L9 from mammals, Drosophila, plants and yeast. L6 contains two domains with almost identical folds, suggesting that is was derived by the duplication of an ancient RNA-binding protein gene. Analysis reveals several sites on the protein surface where interactions with other ribosome components may occur, the N terminus being involved in protein-protein interactions and the C terminus containing possible RNA-binding sites []. This entry represents the alpha-beta domain found duplicated in ribosomal L6 proteins. This domain consists of two beta-sheets and one alpha-helix packed around single core [].; GO: 0003735 structural constituent of ribosome, 0019843 rRNA binding, 0006412 translation, 0005840 ribosome; PDB: 2HGJ_H 2HGQ_H 2HGU_H 1S1I_H 3O5H_I 3O58_I 3J16_F 3IZS_F 2V47_H 2WDJ_H ....
Probab=40.56 E-value=36 Score=23.96 Aligned_cols=30 Identities=23% Similarity=0.379 Sum_probs=26.9
Q ss_pred CcceEEEeCCEEEEEecceEEEcCCCCCcc
Q psy14539 159 ENVDCDLTTQHVDIRSIKYRLALPLPHPVL 188 (218)
Q Consensus 159 ~didLdV~e~~L~L~s~~Y~L~L~LP~pVd 188 (218)
..+.+.+.+..+.+..++..|.+.||+.|.
T Consensus 3 ~gV~v~~~~~~i~v~G~~g~l~~~~~~~v~ 32 (77)
T PF00347_consen 3 EGVKVTIKGNIITVKGPKGELSRPIPPGVK 32 (77)
T ss_dssp TTCEEEEETTEEEEESSSSEEEEEETTTEE
T ss_pred CcEEEEEeCcEEEEECCCEeEEEECCCCee
Confidence 578899999999999999999999998754
No 48
>KOG3260|consensus
Probab=25.48 E-value=2e+02 Score=25.35 Aligned_cols=65 Identities=20% Similarity=0.310 Sum_probs=52.4
Q ss_pred CCCcEEEEEEcCCCCCCcceEEEeCCEEEEEe-----cceEEEc-CCCCCccCCCeeeEEECCCCEEEEEEec
Q psy14539 143 SCEDMLVTIQLPGEQRENVDCDLTTQHVDIRS-----IKYRLAL-PLPHPVLPHLCQATWDSDKSELKLTLRL 209 (218)
Q Consensus 143 ~~e~LvV~I~LPg~~~~didLdV~e~~L~L~s-----~~Y~L~L-~LP~pVd~~~~kAkfd~~~g~L~VTLpv 209 (218)
+.+.+-+-|.|-|+.-+.+++..+...|+|.. ..|++.+ .|=++++.+.++-+-.. .+.-|+|..
T Consensus 82 s~kfVK~yItL~GV~eenVqv~ftp~Sldl~v~dlqGK~y~~~vnnLlk~I~vEks~~kvKt--d~v~I~~kk 152 (224)
T KOG3260|consen 82 SNKFVKMYITLEGVDEENVQVEFTPMSLDLKVHDLQGKNYRMIVNNLLKPISVEKSSKKVKT--DTVLILCKK 152 (224)
T ss_pred cCCeeEEEEEeecccccceeEEecccceeeeeeecCCcceeeehhhhccccChhhccccccc--ceEEEeehh
Confidence 34678888999999999999999999998864 4799876 48889999888777666 677777743
No 49
>CHL00140 rpl6 ribosomal protein L6; Validated
Probab=24.70 E-value=2.2e+02 Score=24.07 Aligned_cols=44 Identities=16% Similarity=0.299 Sum_probs=33.2
Q ss_pred CCcceEEEeCCEEEEEecceEEEcCCCCCccCCCeeeEEECCCCEEEEEEe
Q psy14539 158 RENVDCDLTTQHVDIRSIKYRLALPLPHPVLPHLCQATWDSDKSELKLTLR 208 (218)
Q Consensus 158 ~~didLdV~e~~L~L~s~~Y~L~L~LP~pVd~~~~kAkfd~~~g~L~VTLp 208 (218)
++.|.+++.+..|.+..|+=.|...||+.|.- ..+.+.+.|+..
T Consensus 12 P~~V~v~i~~~~v~vkGp~G~l~~~~~~~v~i-------~~~~~~i~v~~~ 55 (178)
T CHL00140 12 PDNVNVSIDDQIIKVKGPKGTLSRKIPDLITI-------EIQDNSLFVSKK 55 (178)
T ss_pred CCCCEEEEECCEEEEECCCEEEEEECCCCeEE-------EEeCCEEEEEcC
Confidence 56888999999999999999999999996643 223355666543
No 50
>PF09814 HECT_2: HECT-like Ubiquitin-conjugating enzyme (E2)-binding; InterPro: IPR019193 This entry consists of E3 ubiquitin-protein ligases which accept ubiquitin from specific E2 ubiquitin-conjugating enzymes, and transfer it to substrates, generally promoting their degradation by the proteasome [].
Probab=24.49 E-value=3.1e+02 Score=24.82 Aligned_cols=67 Identities=18% Similarity=0.230 Sum_probs=45.5
Q ss_pred CcEEEEEEcCCCCCCc--ceEEEeCCEEEEEec-ceEEEcCCCCCccCCCeeeE-EECCCCEEEEEEeccc
Q psy14539 145 EDMLVTIQLPGEQREN--VDCDLTTQHVDIRSI-KYRLALPLPHPVLPHLCQAT-WDSDKSELKLTLRLTR 211 (218)
Q Consensus 145 e~LvV~I~LPg~~~~d--idLdV~e~~L~L~s~-~Y~L~L~LP~pVd~~~~kAk-fd~~~g~L~VTLpv~r 211 (218)
..+.|.|.+|.--... +.|......+.+.-. .....+.||..|......-. .....+.+..+|++..
T Consensus 7 ~~~~v~v~~~~~~~~~~~~~l~~s~~~i~i~~~~~~~~~i~LP~~v~~~~~~~~~~~~~~~~~~~rl~~~~ 77 (354)
T PF09814_consen 7 RSISVFVSLPSEVNSSTRTSLSPSGLSITISEKSGESESIKLPAEVSLDSSTLSILQISSNELSFRLQLDE 77 (354)
T ss_pred ceEEEEEECCCccCcccceeecCCCCeEEEecCCceEEEEeCcCeEeeccccceeecccCceEEEEEEecC
Confidence 4566788887766333 466666677777665 77899999999998665443 3334457777777653
No 51
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=24.45 E-value=91 Score=29.27 Aligned_cols=81 Identities=20% Similarity=0.272 Sum_probs=60.2
Q ss_pred CCCCeEEEEEeeeccchhhhhhcCCCCCCCCCCCcEEEEEEcCCCCCCcceEEEeCCEEEEEec--c----eEEEcCCCC
Q psy14539 112 RITPEYDIMYQQSVTSEDIYLQMGGKTPSSVSCEDMLVTIQLPGEQRENVDCDLTTQHVDIRSI--K----YRLALPLPH 185 (218)
Q Consensus 112 r~~PeY~i~ykq~V~~eD~~lg~~~k~Pss~~~e~LvV~I~LPg~~~~didLdV~e~~L~L~s~--~----Y~L~L~LP~ 185 (218)
-+.|+.+|.|-+. .....+.|-|.-|.+...+|.+-+..++|.|.-. + +-....|-+
T Consensus 170 qE~~~~~i~yd~s-----------------~Ts~t~~ifiy~~pv~deqVs~~~e~NTL~I~~q~~~~~~~~~~~~~Ly~ 232 (368)
T COG5091 170 QESPKMEIAYDFS-----------------ETSDTAIIFIYRPPVGDEQVSPVLEGNTLSISYQPRRLRLWNDITISLYK 232 (368)
T ss_pred ccCccceeeeecc-----------------ccceeEEEEEecCCCCccccceeecCCcceeeeeccccchHHHhhhhhhh
Confidence 4568888877662 1235778888899999999999999999998743 2 224678889
Q ss_pred CccCCCeeeEEECCCCEEEEEEeccc
Q psy14539 186 PVLPHLCQATWDSDKSELKLTLRLTR 211 (218)
Q Consensus 186 pVd~~~~kAkfd~~~g~L~VTLpv~r 211 (218)
.|+++...-+--+ ++++|+|....
T Consensus 233 ev~P~~~s~k~fs--K~~e~~l~KV~ 256 (368)
T COG5091 233 EVYPDIRSIKSFS--KRVEVHLRKVE 256 (368)
T ss_pred hcCcchhhhhhcc--hhheehhhhhh
Confidence 9999877665555 77888877654
No 52
>PF13349 DUF4097: Domain of unknown function (DUF4097)
Probab=22.25 E-value=3.5e+02 Score=21.19 Aligned_cols=46 Identities=13% Similarity=0.172 Sum_probs=27.7
Q ss_pred cceEEEeCCEEEEEecce----EEEcCCCCCccCCCeeeEEECCCCEEEEEEecccccccc
Q psy14539 160 NVDCDLTTQHVDIRSIKY----RLALPLPHPVLPHLCQATWDSDKSELKLTLRLTREFDCV 216 (218)
Q Consensus 160 didLdV~e~~L~L~s~~Y----~L~L~LP~pVd~~~~kAkfd~~~g~L~VTLpv~re~df~ 216 (218)
.+++.+.+..|.|+.... +..+.|.. . .....++|+||....|+-+
T Consensus 86 ~~~~~~~~~~L~I~~~~~~~~~~~~~~~~~----------~-~~~~~i~I~lP~~~~l~~i 135 (166)
T PF13349_consen 86 KPEISVEGGTLTIKSKDRESFFFKGFNFNN----------S-DNKSKITIYLPKDYKLDKI 135 (166)
T ss_pred EEEEEEcCCEEEEEEecccccccceEEEcc----------c-CCCcEEEEEECCCCceeEE
Confidence 677888888888876511 12111111 1 3457899999987655543
No 53
>PF13761 DUF4166: Domain of unknown function (DUF4166)
Probab=21.00 E-value=4.4e+02 Score=21.69 Aligned_cols=50 Identities=16% Similarity=0.398 Sum_probs=34.5
Q ss_pred CcceEEEeCCEEEEEecceE-EEcCCCCCccCCC-eeeEEECCCCEEEEEEecc
Q psy14539 159 ENVDCDLTTQHVDIRSIKYR-LALPLPHPVLPHL-CQATWDSDKSELKLTLRLT 210 (218)
Q Consensus 159 ~didLdV~e~~L~L~s~~Y~-L~L~LP~pVd~~~-~kAkfd~~~g~L~VTLpv~ 210 (218)
-++.|.|.+..|.+++..++ +.|+||.-..+.. +.-.|+. +...+.+.+.
T Consensus 96 ~~l~l~v~~G~L~~~s~~~~l~giplP~~L~p~~~~~E~~d~--~~f~f~V~v~ 147 (162)
T PF13761_consen 96 FDLRLRVEDGGLRFRSGRQRLFGIPLPRWLTPRAEAREHYDD--GRFRFDVEVS 147 (162)
T ss_pred EEEEEEEeCCEEEEEECCEEEEcccCCcccCCcEEEEEEEeC--CEEEEEEEEE
Confidence 36688889999999987544 5788888766533 3334553 8777776554
Done!