RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy14539
         (218 letters)



>2xcm_C SGT1-like protein, cytosolic heat shock protein 90;
           chaperone-protein binding complex, stress response; HET:
           ADP; 2.20A {Arabidopsis thaliana} PDB: 2jki_S*
          Length = 92

 Score = 36.3 bits (84), Expect = 0.001
 Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 5/67 (7%)

Query: 145 EDMLVTIQLPGEQRENVDCDLTTQHVDIRSI-----KYRLALPLPHPVLPHLCQATWDSD 199
           E+++VT+   G  ++NV+ D   Q + +         Y L   L   ++P  C+    S 
Sbjct: 12  EEVVVTVFAKGIPKQNVNIDFGEQILSVVIEVPGEDAYYLQPRLFGKIIPDKCKYEVLST 71

Query: 200 KSELKLT 206
           K E+ L 
Sbjct: 72  KIEICLA 78


>1rl1_A Suppressor of G2 allele of SKP1 homolog; beta sandwich, 7 beta
           strands, similar to P23, lacking LAST beta strand SEEN
           in P23, protein degradation; NMR {Homo sapiens} SCOP:
           b.15.1.3
          Length = 114

 Score = 36.1 bits (83), Expect = 0.002
 Identities = 15/67 (22%), Positives = 30/67 (44%), Gaps = 5/67 (7%)

Query: 145 EDMLVTIQLPGEQRENVDCDLTTQHVDIRSI-----KYRLALPLPHPVLPHLCQATWDSD 199
             +++T+ +   Q+ +V+ + + + +           Y L L L HP++P        S 
Sbjct: 19  SQVVITLMIKNVQKNDVNVEFSEKELSALVKLPSGEDYNLKLELLHPIIPEQSTFKVLST 78

Query: 200 KSELKLT 206
           K E+KL 
Sbjct: 79  KIEIKLK 85


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
            acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
            synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 35.8 bits (82), Expect = 0.009
 Identities = 20/103 (19%), Positives = 39/103 (37%), Gaps = 20/103 (19%)

Query: 120  M----YQQSVTSEDIYLQMGGKTPSS--VSCEDML------VTIQLPGEQ----RENVDC 163
            M    Y+ S  ++D++ +       +   S  D++      +TI   GE+    REN   
Sbjct: 1631 MGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYS- 1689

Query: 164  DLTTQHVDIRSIKYRLALPLPHPVLPHLCQATWDSDKSELKLT 206
             +  + +    +K      +   +  H    T+ S+K  L  T
Sbjct: 1690 AMIFETIVDGKLKTE---KIFKEINEHSTSYTFRSEKGLLSAT 1729


>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
           cerevisiae}
          Length = 231

 Score = 31.2 bits (70), Expect = 0.17
 Identities = 9/49 (18%), Positives = 17/49 (34%), Gaps = 12/49 (24%)

Query: 50  ENPRFKVNIRRVTADDPSEE---SGPSNGKGDSAKTDEEDDKWAIWNKD 95
           EN   ++         P  E   S  ++   ++   DE + K   W+  
Sbjct: 172 ENIAIEL---------PPNEILFSENNDMDNNNDGVDELNKKCTFWDAI 211


>1wh0_A Ubiquitin carboxyl-terminal hydrolase 19; USP, CS domain,
           structural genomics, riken structural
           genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
           SCOP: b.15.1.3
          Length = 134

 Score = 27.7 bits (61), Expect = 1.7
 Identities = 8/78 (10%), Positives = 24/78 (30%), Gaps = 17/78 (21%)

Query: 145 EDMLVTIQLPGEQRENVDCDLTTQHVDIR-----------------SIKYRLALPLPHPV 187
           + ++V + +    R+        Q   +                     +R  + L + +
Sbjct: 30  DSVVVHVYVKEICRDTSRVLFREQDFTLIFQTRDGNFLRLHPGCGPHTTFRWQVKLRNLI 89

Query: 188 LPHLCQATWDSDKSELKL 205
            P  C   + + + ++ L
Sbjct: 90  EPEQCTFCFTASRIDICL 107


>1egz_A Endoglucanase Z, EGZ, CEL5; glycosyl hydrolase, CLAN GH-A, family
           5-2, cellulase; 2.30A {Erwinia chrysanthemi} SCOP:
           c.1.8.3
          Length = 291

 Score = 26.4 bits (58), Expect = 8.7
 Identities = 15/57 (26%), Positives = 18/57 (31%), Gaps = 15/57 (26%)

Query: 69  ESGPSNGKGDSAKTDEEDDK-----------WAIW---NKDEVPSMDTLPDDANLDP 111
           E G  N  G+      E D             A W   +K+E  S    PD  NL  
Sbjct: 220 EWGTVNADGNGGVNQTETDAWVTFMRDNNISNANWALNDKNEGASTYY-PDSKNLTE 275


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.311    0.130    0.386 

Gapped
Lambda     K      H
   0.267   0.0515    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,252,690
Number of extensions: 182602
Number of successful extensions: 219
Number of sequences better than 10.0: 1
Number of HSP's gapped: 218
Number of HSP's successfully gapped: 9
Length of query: 218
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 128
Effective length of database: 4,188,903
Effective search space: 536179584
Effective search space used: 536179584
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.5 bits)