RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14539
         (218 letters)



>d1rl1a_ b.15.1.3 (A:) Suppressor of G2 allele of skp1 homolog, gst1
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 92

 Score = 37.6 bits (87), Expect = 1e-04
 Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 5/66 (7%)

Query: 145 EDMLVTIQLPGEQRENVDCDLTTQHVDIR-----SIKYRLALPLPHPVLPHLCQATWDSD 199
             +++T+ +   Q+ +V+ + + + +           Y L L L HP++P        S 
Sbjct: 12  SQVVITLMIKNVQKNDVNVEFSEKELSALVKLPSGEDYNLKLELLHPIIPEQSTFKVLST 71

Query: 200 KSELKL 205
           K E+KL
Sbjct: 72  KIEIKL 77


>d1wh0a_ b.15.1.3 (A:) Ubiquitin carboxyl-terminal hydrolase 19,
           USP19 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 134

 Score = 31.1 bits (70), Expect = 0.048
 Identities = 8/74 (10%), Positives = 21/74 (28%), Gaps = 17/74 (22%)

Query: 149 VTIQLPGEQRENVDCDLTTQHVDI-----------------RSIKYRLALPLPHPVLPHL 191
           V + +    R+        Q   +                     +R  + L + + P  
Sbjct: 34  VHVYVKEICRDTSRVLFREQDFTLIFQTRDGNFLRLHPGCGPHTTFRWQVKLRNLIEPEQ 93

Query: 192 CQATWDSDKSELKL 205
           C   + + + ++ L
Sbjct: 94  CTFCFTASRIDICL 107


>d1irya_ d.113.1.1 (A:) 7,8-dihydro-8-oxoguanine triphosphatase
           Hmth1 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 156

 Score = 27.3 bits (60), Expect = 1.00
 Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 2/37 (5%)

Query: 77  GDSAKTDEEDDKWAIWNKDEVPSMDTLPDDANLDPRI 113
           G   ++DE    W  +  D++P  D  PDD+   P +
Sbjct: 93  GTPVESDEMRPCW--FQLDQIPFKDMWPDDSYWFPLL 127


>d1u7na_ c.77.1.4 (A:) Fatty acid/phospholipid synthesis protein
           PlsX {Enterococcus faecalis [TaxId: 1351]}
          Length = 329

 Score = 25.7 bits (56), Expect = 4.5
 Identities = 14/115 (12%), Positives = 26/115 (22%), Gaps = 20/115 (17%)

Query: 41  VGGASRHAPENPRFKVNIRRVTADDPSEESGPSNGKGDSAKTDEEDDKWA---IWNKDEV 97
           V G      + P  +  +                  G  A+  +         I + DE 
Sbjct: 18  VEGVMLAKQDFPDIEFQL-----------------YGKEAEIKKYITDEKNITIIHTDEK 60

Query: 98  PSMDTLPDDANLDPRITPEYDIMYQQSVTSEDIYLQMGGKTPSSVSCEDMLVTIQ 152
            + D  P  A    +                D     G       +   ++  I+
Sbjct: 61  IASDDEPVKAIRRKKTASMVLAAQAVKNGEADAIFSAGNTGALLAAGLFIVGRIK 115


>d1vcda1 d.113.1.1 (A:1-126) AP6A hydrolase Ndx1 {Thermus
           thermophilus [TaxId: 274]}
          Length = 126

 Score = 24.6 bits (53), Expect = 7.1
 Identities = 5/29 (17%), Positives = 13/29 (44%)

Query: 81  KTDEEDDKWAIWNKDEVPSMDTLPDDANL 109
           + +E       ++ +E  ++   P+D  L
Sbjct: 88  RLEEGMTGAGWFSPEEARALLAFPEDLGL 116


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.311    0.130    0.386 

Gapped
Lambda     K      H
   0.267   0.0570    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 802,405
Number of extensions: 35875
Number of successful extensions: 46
Number of sequences better than 10.0: 1
Number of HSP's gapped: 46
Number of HSP's successfully gapped: 5
Length of query: 218
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 136
Effective length of database: 1,281,736
Effective search space: 174316096
Effective search space used: 174316096
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 51 (23.8 bits)