Query psy14540
Match_columns 291
No_of_seqs 251 out of 1783
Neff 12.0
Searched_HMMs 46136
Date Fri Aug 16 22:31:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14540.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14540hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3513|consensus 100.0 6.7E-39 1.4E-43 267.0 27.9 260 2-282 240-560 (1051)
2 KOG3513|consensus 100.0 4.3E-31 9.4E-36 220.7 23.9 264 3-283 40-374 (1051)
3 KOG4222|consensus 100.0 1.3E-28 2.8E-33 204.8 19.5 269 1-279 30-354 (1281)
4 KOG4194|consensus 100.0 1.4E-28 2.9E-33 193.0 16.3 232 2-282 503-749 (873)
5 KOG4221|consensus 100.0 9.5E-28 2.1E-32 200.8 22.3 230 2-284 140-372 (1381)
6 KOG4221|consensus 99.9 7.2E-26 1.6E-30 189.8 20.7 254 5-282 240-561 (1381)
7 PHA02785 IL-beta-binding prote 99.9 2.2E-25 4.8E-30 172.6 21.2 212 12-283 36-266 (326)
8 KOG4222|consensus 99.9 1.6E-24 3.4E-29 180.8 13.8 268 4-289 133-469 (1281)
9 PHA02826 IL-1 receptor-like pr 99.9 3.6E-22 7.8E-27 145.4 15.8 163 9-187 29-211 (227)
10 KOG4194|consensus 99.9 9.3E-22 2E-26 155.0 18.3 176 2-192 612-789 (873)
11 PHA02785 IL-beta-binding prote 99.8 2.3E-18 5E-23 133.6 19.3 128 8-150 127-266 (326)
12 cd05762 Ig8_MLCK Eighth immuno 99.8 6.4E-19 1.4E-23 111.9 12.2 96 3-103 1-97 (98)
13 cd05851 Ig3_Contactin-1 Third 99.7 2.8E-17 6.1E-22 102.4 10.5 87 2-96 1-87 (88)
14 cd05747 Ig5_Titin_like M5, fif 99.7 1.9E-16 4.1E-21 99.9 11.2 88 2-94 3-91 (92)
15 cd05869 Ig5_NCAM-1 Fifth immun 99.7 6.3E-16 1.4E-20 98.5 11.4 95 2-96 2-97 (97)
16 PF07679 I-set: Immunoglobulin 99.7 2.3E-16 5E-21 99.5 9.2 89 3-96 1-90 (90)
17 cd04975 Ig4_SCFR_like Fourth i 99.7 9.4E-16 2E-20 97.4 11.6 88 10-97 11-100 (101)
18 cd05735 Ig8_DSCAM Eight immuno 99.7 1.2E-15 2.5E-20 95.0 11.8 85 17-102 1-87 (88)
19 cd05732 Ig5_NCAM-1_like Fifth 99.7 8.7E-16 1.9E-20 98.0 11.1 94 2-96 2-96 (96)
20 cd05870 Ig5_NCAM-2 Fifth immun 99.7 1.8E-15 3.8E-20 96.6 11.1 94 2-96 2-98 (98)
21 cd05894 Ig_C5_MyBP-C C5 immuno 99.7 2.4E-15 5.2E-20 93.1 11.1 81 11-96 4-86 (86)
22 cd05737 Ig_Myomesin_like_C C-t 99.7 2.2E-15 4.8E-20 94.9 10.7 84 9-96 8-92 (92)
23 cd05762 Ig8_MLCK Eighth immuno 99.7 2.6E-15 5.7E-20 95.3 10.8 89 112-241 6-94 (98)
24 cd05730 Ig3_NCAM-1_like Third 99.7 2.3E-15 4.9E-20 95.7 10.2 90 2-98 1-94 (95)
25 cd05865 Ig1_NCAM-1 First immun 99.6 3.7E-15 8E-20 93.9 10.8 88 5-96 3-95 (96)
26 PHA02826 IL-1 receptor-like pr 99.6 6E-15 1.3E-19 107.8 13.3 77 202-283 97-177 (227)
27 cd05737 Ig_Myomesin_like_C C-t 99.6 3.8E-15 8.3E-20 93.9 10.5 83 113-196 8-90 (92)
28 cd04972 Ig_TrkABC_d4 Fourth do 99.6 5.9E-15 1.3E-19 92.6 11.3 88 5-96 3-90 (90)
29 cd04968 Ig3_Contactin_like Thi 99.6 3.1E-15 6.7E-20 93.6 10.0 87 2-96 1-87 (88)
30 cd07693 Ig1_Robo First immunog 99.6 4.2E-15 9.1E-20 95.8 10.9 95 2-96 1-99 (100)
31 cd05771 IgC_Tapasin_R Tapasin- 99.6 1.4E-14 3E-19 98.8 13.6 129 63-226 2-131 (139)
32 cd05728 Ig4_Contactin-2-like F 99.6 3.2E-15 6.9E-20 92.6 9.4 84 4-96 1-85 (85)
33 cd05854 Ig6_Contactin-2 Sixth 99.6 8.1E-15 1.8E-19 90.5 11.1 83 18-100 1-85 (85)
34 cd05859 Ig4_PDGFR-alpha Fourth 99.6 6.7E-15 1.5E-19 93.7 10.8 87 11-97 12-100 (101)
35 cd04975 Ig4_SCFR_like Fourth i 99.6 5.9E-15 1.3E-19 93.7 9.7 39 113-152 10-49 (101)
36 cd05892 Ig_Myotilin_C C-termin 99.6 8E-15 1.7E-19 87.8 9.1 73 20-96 1-75 (75)
37 cd05894 Ig_C5_MyBP-C C5 immuno 99.6 1.4E-14 3E-19 89.7 10.1 79 115-195 4-83 (86)
38 cd05773 Ig8_hNephrin_like Eigh 99.6 3.2E-14 6.9E-19 92.2 12.0 98 2-100 4-108 (109)
39 cd05892 Ig_Myotilin_C C-termin 99.6 6.4E-15 1.4E-19 88.2 7.9 72 124-196 1-73 (75)
40 cd05745 Ig3_Peroxidasin Third 99.6 7.3E-15 1.6E-19 88.5 8.2 73 16-96 1-74 (74)
41 KOG3515|consensus 99.6 2.2E-14 4.7E-19 118.5 13.1 233 3-283 8-250 (741)
42 cd05866 Ig1_NCAM-2 First immun 99.6 3.1E-14 6.7E-19 88.8 10.7 86 5-96 3-91 (92)
43 cd05891 Ig_M-protein_C C-termi 99.6 2.6E-14 5.6E-19 89.8 10.4 85 8-96 7-92 (92)
44 cd05740 Ig_CEACAM_D4 Fourth im 99.6 2.2E-14 4.8E-19 89.7 10.0 87 2-96 1-90 (91)
45 cd05851 Ig3_Contactin-1 Third 99.6 1.5E-14 3.3E-19 90.0 8.9 77 113-195 8-84 (88)
46 cd05893 Ig_Palladin_C C-termin 99.6 1.6E-14 3.5E-19 86.7 8.6 73 20-96 1-75 (75)
47 cd05863 Ig2_VEGFR-3 Second imm 99.6 1.1E-14 2.4E-19 84.7 7.6 66 20-97 1-66 (67)
48 cd05855 Ig_TrkB_d5 Fifth domai 99.6 4.3E-14 9.3E-19 84.9 9.7 74 22-95 3-77 (79)
49 cd05853 Ig6_Contactin-4 Sixth 99.6 2.8E-14 6.2E-19 87.0 9.0 82 18-100 1-85 (85)
50 cd05745 Ig3_Peroxidasin Third 99.6 2.2E-14 4.7E-19 86.5 8.3 72 120-196 1-72 (74)
51 cd05852 Ig5_Contactin-1 Fifth 99.6 2.2E-14 4.8E-19 85.6 8.1 72 17-96 1-73 (73)
52 cd05857 Ig2_FGFR Second immuno 99.6 6.6E-14 1.4E-18 87.1 10.4 82 12-96 4-85 (85)
53 cd05891 Ig_M-protein_C C-termi 99.6 6.8E-14 1.5E-18 87.9 10.3 82 113-195 8-89 (92)
54 cd04970 Ig6_Contactin_like Six 99.6 5.6E-14 1.2E-18 87.2 9.8 83 18-100 1-85 (85)
55 cd05867 Ig4_L1-CAM_like Fourth 99.6 4.9E-14 1.1E-18 85.4 9.2 75 17-96 1-75 (76)
56 cd05752 Ig1_FcgammaR_like Frst 99.6 3E-14 6.4E-19 86.1 8.1 67 3-84 1-68 (78)
57 cd05758 Ig5_KIRREL3-like Fifth 99.6 1E-13 2.3E-18 88.4 11.1 91 2-94 2-97 (98)
58 cd05859 Ig4_PDGFR-alpha Fourth 99.6 3.6E-14 7.9E-19 90.3 8.7 89 115-238 12-100 (101)
59 cd05744 Ig_Myotilin_C_like Imm 99.6 8.2E-14 1.8E-18 83.9 9.8 73 20-96 1-75 (75)
60 cd05747 Ig5_Titin_like M5, fif 99.6 1.1E-13 2.3E-18 87.3 10.7 83 111-195 8-90 (92)
61 cd05748 Ig_Titin_like Immunogl 99.5 1.1E-13 2.5E-18 83.4 10.1 73 19-96 1-74 (74)
62 cd05868 Ig4_NrCAM Fourth immun 99.5 5.6E-14 1.2E-18 84.9 8.6 76 17-97 1-76 (76)
63 cd04973 Ig1_FGFR First immunog 99.5 7.1E-14 1.5E-18 85.2 9.2 77 9-95 1-78 (79)
64 cd05865 Ig1_NCAM-1 First immun 99.5 7.4E-14 1.6E-18 88.0 9.5 71 115-186 9-82 (96)
65 cd05852 Ig5_Contactin-1 Fifth 99.5 5.1E-14 1.1E-18 84.1 8.3 71 121-196 1-71 (73)
66 cd05744 Ig_Myotilin_C_like Imm 99.5 7E-14 1.5E-18 84.2 8.7 72 124-196 1-73 (75)
67 cd05893 Ig_Palladin_C C-termin 99.5 3.8E-14 8.3E-19 85.0 7.5 71 124-195 1-72 (75)
68 cd04977 Ig1_NCAM-1_like First 99.5 1.6E-13 3.5E-18 86.2 10.4 86 5-95 3-91 (92)
69 cd05857 Ig2_FGFR Second immuno 99.5 1E-13 2.2E-18 86.2 9.4 75 116-191 4-78 (85)
70 cd04972 Ig_TrkABC_d4 Fourth do 99.5 2.4E-13 5.2E-18 85.3 10.6 80 113-194 7-86 (90)
71 cd05863 Ig2_VEGFR-3 Second imm 99.5 4.4E-14 9.6E-19 82.2 6.4 61 124-194 1-61 (67)
72 cd04976 Ig2_VEGFR Second immun 99.5 1.2E-13 2.6E-18 82.2 8.4 70 20-97 1-70 (71)
73 cd05728 Ig4_Contactin-2-like F 99.5 9.2E-14 2E-18 86.1 8.1 72 113-190 6-77 (85)
74 cd05861 Ig1_PDGFR-alphabeta Fr 99.5 4.6E-13 9.9E-18 82.5 11.0 81 17-97 1-83 (84)
75 cd05848 Ig1_Contactin-5 First 99.5 2.1E-13 4.6E-18 86.0 9.7 80 2-88 1-85 (94)
76 cd04978 Ig4_L1-NrCAM_like Four 99.5 1.1E-13 2.3E-18 84.2 7.8 75 17-96 1-75 (76)
77 PF07679 I-set: Immunoglobulin 99.5 1E-13 2.2E-18 87.4 8.0 75 113-189 7-81 (90)
78 cd04969 Ig5_Contactin_like Fif 99.5 1.6E-13 3.5E-18 82.5 8.4 72 17-96 1-73 (73)
79 cd04971 Ig_TrKABC_d5 Fifth dom 99.5 3.3E-13 7.1E-18 82.2 9.7 75 21-95 2-79 (81)
80 cd05722 Ig1_Neogenin First imm 99.5 3.5E-13 7.5E-18 85.6 10.2 86 5-95 2-94 (95)
81 cd05855 Ig_TrkB_d5 Fifth domai 99.5 2.4E-13 5.2E-18 81.7 8.8 69 126-195 3-75 (79)
82 cd05850 Ig1_Contactin-2 First 99.5 4.6E-13 1E-17 84.5 10.4 82 2-89 1-86 (94)
83 cd05723 Ig4_Neogenin Fourth im 99.5 2.5E-13 5.5E-18 81.0 8.8 70 19-96 1-71 (71)
84 cd05849 Ig1_Contactin-1 First 99.5 3E-13 6.6E-18 84.9 9.5 79 2-89 1-85 (93)
85 cd05864 Ig2_VEGFR-2 Second imm 99.5 1.7E-13 3.6E-18 80.8 7.6 69 20-97 1-69 (70)
86 cd05743 Ig_Perlecan_D2_like Im 99.5 3.2E-13 7E-18 82.2 8.9 72 17-93 1-73 (78)
87 cd05856 Ig2_FGFRL1-like Second 99.5 2.7E-13 5.8E-18 83.8 8.7 79 12-96 4-82 (82)
88 cd05724 Ig2_Robo Second immuno 99.5 4E-13 8.6E-18 83.8 9.2 79 8-94 2-84 (86)
89 cd05756 Ig1_IL1R_like First im 99.5 2.9E-13 6.4E-18 85.0 8.6 83 10-96 7-94 (94)
90 cd05876 Ig3_L1-CAM Third immun 99.5 2.2E-13 4.8E-18 81.2 7.6 70 20-96 1-70 (71)
91 cd05723 Ig4_Neogenin Fourth im 99.5 2.9E-13 6.3E-18 80.7 8.1 69 123-196 1-69 (71)
92 cd04973 Ig1_FGFR First immunog 99.5 4.4E-13 9.6E-18 81.7 9.0 74 115-195 3-76 (79)
93 cd05748 Ig_Titin_like Immunogl 99.5 4.4E-13 9.5E-18 80.9 8.9 70 123-194 1-70 (74)
94 cd05749 Ig2_Tyro3_like Second 99.5 4.5E-13 9.7E-18 81.4 8.7 73 5-89 1-74 (81)
95 cd05743 Ig_Perlecan_D2_like Im 99.5 4.6E-13 9.9E-18 81.5 8.7 72 121-194 1-72 (78)
96 cd05730 Ig3_NCAM-1_like Third 99.5 3.5E-13 7.6E-18 85.6 8.5 36 115-151 12-47 (95)
97 cd05853 Ig6_Contactin-4 Sixth 99.5 5.3E-13 1.2E-17 81.4 8.8 81 122-241 1-85 (85)
98 cd05867 Ig4_L1-CAM_like Fourth 99.5 3.3E-13 7.2E-18 81.7 8.0 72 121-196 1-73 (76)
99 cd04968 Ig3_Contactin_like Thi 99.5 5.1E-13 1.1E-17 83.5 9.1 76 113-194 8-83 (88)
100 cd05868 Ig4_NrCAM Fourth immun 99.5 2.7E-13 5.8E-18 81.9 7.4 72 121-195 1-72 (76)
101 cd05858 Ig3_FGFR-2 Third immun 99.5 5.1E-13 1.1E-17 83.8 8.9 80 17-96 1-89 (90)
102 cd05742 Ig1_VEGFR_like First i 99.5 5.5E-13 1.2E-17 82.5 8.9 80 17-96 1-83 (84)
103 cd05735 Ig8_DSCAM Eight immuno 99.5 1E-12 2.2E-17 81.7 10.1 85 121-242 1-86 (88)
104 cd04969 Ig5_Contactin_like Fif 99.5 3.9E-13 8.5E-18 80.8 7.9 71 121-196 1-71 (73)
105 cd05760 Ig2_PTK7 Second immuno 99.5 5.6E-13 1.2E-17 80.8 8.6 73 20-97 1-75 (77)
106 cd05739 Ig3_RPTP_IIa_LAR_like 99.5 7.3E-13 1.6E-17 78.2 8.8 68 17-94 1-68 (69)
107 cd04974 Ig3_FGFR Third immunog 99.5 7E-13 1.5E-17 83.0 9.3 80 17-96 1-89 (90)
108 cd05725 Ig3_Robo Third immunog 99.5 4.4E-13 9.5E-18 79.6 7.9 69 20-96 1-69 (69)
109 cd05746 Ig4_Peroxidasin Fourth 99.5 4E-13 8.8E-18 79.6 7.2 67 20-94 1-68 (69)
110 cd05726 Ig4_Robo Fhird immunog 99.5 5.1E-13 1.1E-17 83.8 8.0 81 17-100 1-85 (90)
111 cd04971 Ig_TrKABC_d5 Fifth dom 99.5 7.4E-13 1.6E-17 80.7 8.3 69 126-195 3-77 (81)
112 cd04976 Ig2_VEGFR Second immun 99.4 2.9E-13 6.2E-18 80.6 6.2 61 124-190 1-61 (71)
113 cd04978 Ig4_L1-NrCAM_like Four 99.4 4.3E-13 9.3E-18 81.5 7.0 67 121-190 1-67 (76)
114 cd05763 Ig_1 Subgroup of the i 99.4 1.4E-12 3E-17 78.8 9.1 73 20-96 1-74 (75)
115 cd05864 Ig2_VEGFR-2 Second imm 99.4 4.7E-13 1E-17 78.9 6.8 64 124-194 1-64 (70)
116 cd05746 Ig4_Peroxidasin Fourth 99.4 5.4E-13 1.2E-17 79.1 7.0 67 124-195 1-67 (69)
117 cd05870 Ig5_NCAM-2 Fifth immun 99.4 2.3E-12 5.1E-17 82.2 10.2 30 114-144 9-38 (98)
118 cd05731 Ig3_L1-CAM_like Third 99.4 7E-13 1.5E-17 79.4 7.4 70 20-96 1-70 (71)
119 cd05882 Ig1_Necl-1 First (N-te 99.4 2.3E-12 5.1E-17 80.9 9.9 75 9-83 4-83 (95)
120 cd05898 Ig5_KIRREL3 Fifth immu 99.4 3.8E-12 8.2E-17 79.8 10.7 91 2-94 2-97 (98)
121 cd05854 Ig6_Contactin-2 Sixth 99.4 2.1E-12 4.5E-17 79.7 9.4 80 122-241 1-85 (85)
122 cd05732 Ig5_NCAM-1_like Fifth 99.4 2.3E-12 4.9E-17 82.1 10.0 34 115-149 10-43 (96)
123 cd05739 Ig3_RPTP_IIa_LAR_like 99.4 1E-12 2.2E-17 77.6 7.6 67 121-195 1-67 (69)
124 cd05869 Ig5_NCAM-1 Fifth immun 99.4 2.7E-12 5.8E-17 81.7 10.1 33 116-149 12-44 (97)
125 cd05724 Ig2_Robo Second immuno 99.4 4.1E-12 8.8E-17 79.2 10.2 73 114-190 4-77 (86)
126 cd04977 Ig1_NCAM-1_like First 99.4 4.3E-12 9.4E-17 79.7 10.3 73 114-188 8-81 (92)
127 cd05866 Ig1_NCAM-2 First immun 99.4 3.2E-12 7E-17 79.7 9.5 74 114-190 8-82 (92)
128 cd05895 Ig_Pro_neuregulin-1 Im 99.4 2.4E-12 5.3E-17 78.0 8.7 73 20-92 1-74 (76)
129 cd05760 Ig2_PTK7 Second immuno 99.4 3.2E-12 6.9E-17 77.5 8.9 63 124-190 1-64 (77)
130 cd05765 Ig_3 Subgroup of the i 99.4 1.4E-12 3.1E-17 80.3 7.4 76 17-96 1-81 (81)
131 cd07693 Ig1_Robo First immunog 99.4 1E-11 2.2E-16 79.9 11.7 38 112-150 7-44 (100)
132 cd05764 Ig_2 Subgroup of the i 99.4 3.9E-12 8.4E-17 76.7 9.0 72 17-96 1-74 (74)
133 cd07702 Ig2_VEGFR-1 Second imm 99.4 2.1E-12 4.6E-17 76.2 7.4 69 20-95 1-69 (72)
134 cd05750 Ig_Pro_neuregulin Immu 99.4 3.2E-12 7E-17 77.4 8.5 72 20-92 1-73 (75)
135 cd05763 Ig_1 Subgroup of the i 99.4 1.4E-12 3.1E-17 78.8 6.9 23 124-147 1-23 (75)
136 cd05771 IgC_Tapasin_R Tapasin- 99.4 1.3E-12 2.7E-17 89.2 7.4 77 204-280 2-80 (139)
137 cd05876 Ig3_L1-CAM Third immun 99.4 1.4E-12 3.1E-17 77.7 6.7 68 124-196 1-68 (71)
138 cd05856 Ig2_FGFRL1-like Second 99.4 2.1E-12 4.6E-17 79.8 7.6 74 116-193 4-77 (82)
139 cd05773 Ig8_hNephrin_like Eigh 99.4 9.7E-12 2.1E-16 80.6 10.7 85 120-241 22-108 (109)
140 cd05753 Ig2_FcgammaR_like Seco 99.4 2.8E-12 6.1E-17 78.7 7.6 70 6-87 3-73 (83)
141 cd05750 Ig_Pro_neuregulin Immu 99.4 3.2E-12 7E-17 77.4 7.8 69 124-192 1-71 (75)
142 cd05758 Ig5_KIRREL3-like Fifth 99.4 1.2E-11 2.7E-16 78.8 10.8 81 114-195 9-96 (98)
143 cd05740 Ig_CEACAM_D4 Fourth im 99.4 4.5E-12 9.7E-17 79.2 8.5 69 114-188 11-79 (91)
144 cd05858 Ig3_FGFR-2 Third immun 99.4 5.8E-12 1.3E-16 79.0 9.0 85 121-237 1-89 (90)
145 cd05725 Ig3_Robo Third immunog 99.4 2.3E-12 4.9E-17 76.5 6.7 63 124-192 1-63 (69)
146 cd07701 Ig1_Necl-3 First (N-te 99.4 9.1E-12 2E-16 78.5 9.4 72 9-84 4-84 (95)
147 cd04979 Ig_Semaphorin_C Immuno 99.4 1.2E-11 2.5E-16 77.5 9.8 86 8-98 2-88 (89)
148 cd05764 Ig_2 Subgroup of the i 99.4 7.7E-12 1.7E-16 75.4 8.3 71 121-196 1-72 (74)
149 cd05736 Ig2_Follistatin_like S 99.4 8.5E-12 1.8E-16 75.6 8.5 73 20-97 1-74 (76)
150 cd05726 Ig4_Robo Fhird immunog 99.4 8.5E-12 1.8E-16 78.3 8.8 26 121-147 1-26 (90)
151 cd05738 Ig2_RPTP_IIa_LAR_like 99.4 5.4E-12 1.2E-16 75.9 7.5 69 20-96 1-73 (74)
152 cd05848 Ig1_Contactin-5 First 99.4 8.8E-12 1.9E-16 78.6 8.7 67 120-190 18-85 (94)
153 cd07702 Ig2_VEGFR-1 Second imm 99.4 3.6E-12 7.8E-17 75.3 6.4 60 124-188 1-60 (72)
154 cd05754 Ig3_Perlecan_like Thir 99.3 7.8E-12 1.7E-16 77.6 8.2 79 6-94 5-84 (85)
155 cd05873 Ig_Sema4D_like Immunog 99.3 2.4E-11 5.1E-16 74.5 9.9 69 8-84 2-70 (87)
156 cd04974 Ig3_FGFR Third immunog 99.3 1.2E-11 2.7E-16 77.4 9.0 24 121-145 1-24 (90)
157 cd04967 Ig1_Contactin First Ig 99.3 1.4E-11 3E-16 77.5 9.2 79 3-88 2-85 (91)
158 cd05729 Ig2_FGFR_like Second i 99.3 3.7E-11 8E-16 74.8 11.0 80 12-95 4-84 (85)
159 cd04970 Ig6_Contactin_like Six 99.3 1.2E-11 2.6E-16 76.7 8.7 83 122-241 1-85 (85)
160 cd05749 Ig2_Tyro3_like Second 99.3 1E-11 2.2E-16 75.5 8.1 68 113-190 5-73 (81)
161 cd05895 Ig_Pro_neuregulin-1 Im 99.3 1.1E-11 2.4E-16 75.1 8.0 69 124-192 1-72 (76)
162 cd05738 Ig2_RPTP_IIa_LAR_like 99.3 1.4E-11 3.1E-16 74.0 8.1 61 124-189 1-63 (74)
163 cd05729 Ig2_FGFR_like Second i 99.3 3.9E-11 8.5E-16 74.6 10.2 73 116-189 4-76 (85)
164 cd05752 Ig1_FcgammaR_like Frst 99.3 1.5E-11 3.3E-16 74.2 7.8 62 112-186 6-68 (78)
165 cd05736 Ig2_Follistatin_like S 99.3 2.4E-11 5.3E-16 73.6 8.8 70 124-195 1-70 (76)
166 cd05722 Ig1_Neogenin First imm 99.3 3.5E-11 7.7E-16 76.3 9.6 39 113-152 6-44 (95)
167 cd05850 Ig1_Contactin-2 First 99.3 3E-11 6.4E-16 76.2 9.0 66 121-190 19-85 (94)
168 cd05731 Ig3_L1-CAM_like Third 99.3 8.5E-12 1.8E-16 74.7 6.2 68 124-196 1-68 (71)
169 cd05733 Ig6_L1-CAM_like Sixth 99.3 1.7E-11 3.7E-16 74.3 7.2 64 124-189 1-68 (77)
170 cd07690 Ig1_CD4 First immunogl 99.3 2.1E-11 4.5E-16 76.1 7.7 75 12-86 2-89 (94)
171 cd05754 Ig3_Perlecan_like Thir 99.3 2E-11 4.3E-16 75.8 7.5 76 112-194 7-82 (85)
172 cd05757 Ig2_IL1R_like Second i 99.3 2.9E-11 6.3E-16 75.4 8.2 77 11-95 4-85 (92)
173 cd05756 Ig1_IL1R_like First im 99.3 1.3E-11 2.8E-16 77.6 6.5 72 116-191 9-87 (94)
174 cd05765 Ig_3 Subgroup of the i 99.3 1.3E-11 2.8E-16 76.0 6.5 24 121-145 1-24 (81)
175 cd05862 Ig1_VEGFR First immuno 99.3 3.7E-11 8E-16 74.3 8.3 81 17-97 1-85 (86)
176 cd05734 Ig7_DSCAM Seventh immu 99.3 1.4E-11 3.1E-16 75.2 6.2 74 20-95 1-78 (79)
177 cd05849 Ig1_Contactin-1 First 99.3 6E-11 1.3E-15 74.5 8.9 64 121-190 19-84 (93)
178 cd05873 Ig_Sema4D_like Immunog 99.3 7.8E-11 1.7E-15 72.2 8.8 67 114-187 4-71 (87)
179 cd05717 Ig1_Necl-1-3_like Firs 99.3 1.4E-10 3.1E-15 73.5 10.3 81 10-95 5-94 (95)
180 cd05875 Ig6_hNeurofascin_like 99.2 7.1E-11 1.5E-15 71.4 7.9 62 124-189 1-68 (77)
181 cd05757 Ig2_IL1R_like Second i 99.2 6.6E-11 1.4E-15 73.8 7.8 73 116-193 5-81 (92)
182 PF13895 Ig_2: Immunoglobulin 99.2 3.6E-11 7.8E-16 73.9 6.6 79 2-96 1-80 (80)
183 cd05874 Ig6_NrCAM Sixth immuno 99.2 6.5E-11 1.4E-15 71.5 7.6 64 124-189 1-68 (77)
184 PHA03376 BARF1; Provisional 99.2 4.7E-10 1E-14 76.5 12.2 129 10-146 19-163 (221)
185 cd07701 Ig1_Necl-3 First (N-te 99.2 1.9E-10 4.1E-15 72.5 9.7 30 114-144 5-34 (95)
186 cd05753 Ig2_FcgammaR_like Seco 99.2 9.2E-11 2E-15 72.0 8.0 64 116-188 9-72 (83)
187 cd05742 Ig1_VEGFR_like First i 99.2 6E-11 1.3E-15 73.4 7.1 81 121-237 1-83 (84)
188 cd05733 Ig6_L1-CAM_like Sixth 99.2 9.4E-11 2E-15 71.0 7.5 64 20-88 1-69 (77)
189 cd05885 Ig2_Necl-4 Second immu 99.2 3.3E-10 7.1E-15 67.9 9.3 67 124-228 2-68 (80)
190 cd05871 Ig_Semaphorin_classIII 99.2 3.4E-10 7.4E-15 70.6 9.7 83 11-98 5-90 (91)
191 cd05727 Ig2_Contactin-2-like S 99.2 1.5E-10 3.4E-15 71.9 7.7 71 115-188 12-84 (96)
192 smart00410 IG_like Immunoglobu 99.2 9.5E-10 2.1E-14 68.3 11.5 82 10-96 2-85 (86)
193 smart00409 IG Immunoglobulin. 99.2 9.5E-10 2.1E-14 68.3 11.5 82 10-96 2-85 (86)
194 cd05882 Ig1_Necl-1 First (N-te 99.2 5.6E-10 1.2E-14 70.1 10.2 33 114-147 5-37 (95)
195 cd05874 Ig6_NrCAM Sixth immuno 99.2 1.9E-10 4.2E-15 69.5 7.8 67 20-90 1-71 (77)
196 cd04979 Ig_Semaphorin_C Immuno 99.2 2.4E-10 5.2E-15 71.5 8.3 35 114-150 4-38 (89)
197 cd05881 Ig1_Necl-2 First (N-te 99.2 5.6E-10 1.2E-14 69.6 9.7 70 10-83 5-83 (95)
198 cd05861 Ig1_PDGFR-alphabeta Fr 99.2 5E-10 1.1E-14 69.0 9.4 26 121-147 1-26 (84)
199 cd05898 Ig5_KIRREL3 Fifth immu 99.2 7.7E-10 1.7E-14 69.4 10.3 85 111-195 6-96 (98)
200 cd05875 Ig6_hNeurofascin_like 99.2 3.4E-10 7.3E-15 68.4 8.4 63 20-89 1-70 (77)
201 KOG3515|consensus 99.2 1.3E-09 2.8E-14 90.9 14.3 267 9-281 307-635 (741)
202 cd05860 Ig4_SCFR Fourth immuno 99.2 1.3E-09 2.8E-14 67.8 10.7 87 11-97 12-100 (101)
203 smart00408 IGc2 Immunoglobulin 99.2 2.4E-10 5.3E-15 66.5 7.3 62 16-85 1-62 (63)
204 cd05734 Ig7_DSCAM Seventh immu 99.2 2E-10 4.3E-15 70.1 7.0 22 124-146 1-22 (79)
205 cd04967 Ig1_Contactin First Ig 99.1 4.7E-10 1E-14 70.5 8.8 66 120-189 18-84 (91)
206 PF00047 ig: Immunoglobulin do 99.1 4.1E-10 9E-15 65.7 7.8 63 17-81 1-64 (64)
207 cd05897 Ig2_IL1R2_like Second 99.1 4.5E-10 9.7E-15 70.0 7.7 71 12-87 5-80 (95)
208 cd05845 Ig2_L1-CAM_like Second 99.1 4.7E-10 1E-14 69.6 7.3 77 1-85 1-82 (95)
209 cd05860 Ig4_SCFR Fourth immuno 99.1 1.6E-09 3.4E-14 67.5 9.4 90 113-238 10-100 (101)
210 smart00408 IGc2 Immunoglobulin 99.1 1.1E-09 2.4E-14 63.7 8.1 62 120-187 1-62 (63)
211 cd07690 Ig1_CD4 First immunogl 99.1 9.2E-10 2E-14 68.7 7.7 31 116-147 2-32 (94)
212 PF00047 ig: Immunoglobulin do 99.1 5.2E-10 1.1E-14 65.3 6.0 63 121-183 1-64 (64)
213 cd05896 Ig1_IL1RAPL-1_like Fir 99.1 2.5E-09 5.4E-14 66.8 9.0 84 10-96 8-104 (104)
214 cd05885 Ig2_Necl-4 Second immu 99.1 3.5E-09 7.6E-14 63.5 9.3 67 19-87 1-68 (80)
215 cd05727 Ig2_Contactin-2-like S 99.1 8.7E-10 1.9E-14 68.6 6.8 70 10-86 11-84 (96)
216 cd05714 Ig_CSPGs_LP Immunoglob 99.0 2.8E-09 6E-14 69.1 9.3 83 16-98 1-104 (106)
217 cd04983 IgV_TCR_alpha_like Imm 99.0 2.4E-09 5.3E-14 69.9 9.0 79 6-84 2-92 (109)
218 PF13927 Ig_3: Immunoglobulin 99.0 9.5E-10 2.1E-14 66.5 6.6 74 2-83 1-75 (75)
219 cd05845 Ig2_L1-CAM_like Second 99.0 1.8E-09 3.8E-14 67.1 7.4 72 113-188 10-83 (95)
220 cd05751 Ig1_LILRB1_like First 99.0 2.7E-09 5.8E-14 66.9 8.3 74 2-84 2-75 (91)
221 smart00410 IG_like Immunoglobu 99.0 1.3E-08 2.7E-13 63.2 11.1 71 116-188 4-75 (86)
222 smart00409 IG Immunoglobulin. 99.0 1.3E-08 2.7E-13 63.2 11.1 71 116-188 4-75 (86)
223 cd05717 Ig1_Necl-1-3_like Firs 99.0 1E-08 2.2E-13 65.0 10.5 29 114-143 5-33 (95)
224 cd05759 Ig2_KIRREL3-like Secon 99.0 8.7E-09 1.9E-13 63.3 9.8 70 19-88 1-72 (82)
225 cd05774 Ig_CEACAM_D1 First imm 99.0 4.9E-09 1.1E-13 66.9 8.7 78 6-85 2-93 (105)
226 cd05879 Ig_P0 Immunoglobulin ( 99.0 9.9E-09 2.1E-13 66.9 10.3 79 8-86 4-104 (116)
227 cd05900 Ig_Aggrecan Immunoglob 99.0 8.1E-09 1.8E-13 66.8 9.6 82 16-97 1-109 (112)
228 cd05878 Ig_Aggrecan_like Immun 99.0 8.1E-09 1.8E-13 67.0 9.7 83 16-98 1-108 (110)
229 cd05872 Ig_Sema4B_like Immunog 99.0 6.6E-09 1.4E-13 63.2 8.4 63 10-82 4-67 (85)
230 cd05883 Ig2_Necl-2 Second immu 99.0 1.5E-08 3.3E-13 60.9 9.7 28 124-151 2-29 (82)
231 cd05862 Ig1_VEGFR First immuno 99.0 7.9E-09 1.7E-13 63.9 8.8 28 121-148 1-29 (86)
232 PHA03376 BARF1; Provisional 99.0 2.5E-08 5.5E-13 68.2 11.7 132 115-277 20-161 (221)
233 cd05759 Ig2_KIRREL3-like Secon 99.0 1.6E-08 3.5E-13 62.1 10.1 27 124-150 2-28 (82)
234 cd05899 IgV_TCR_beta Immunoglo 99.0 5.5E-09 1.2E-13 68.2 8.4 78 6-84 2-94 (110)
235 cd05877 Ig_LP_like Immunoglobu 99.0 8.3E-09 1.8E-13 66.9 9.1 83 16-98 1-104 (106)
236 cd05897 Ig2_IL1R2_like Second 99.0 2.6E-09 5.7E-14 66.5 6.3 74 116-191 5-82 (95)
237 cd05871 Ig_Semaphorin_classIII 98.9 1.2E-08 2.7E-13 63.6 8.2 28 116-145 6-33 (91)
238 cd05713 Ig_MOG_like Immunoglob 98.9 2E-08 4.3E-13 64.4 9.3 80 17-96 1-99 (100)
239 cd05846 Ig1_MRC-OX-2_like Firs 98.9 1.4E-08 3.1E-13 64.5 8.5 80 17-96 1-96 (97)
240 PHA02987 Ig domain OX-2-like p 98.9 2.2E-08 4.7E-13 68.9 9.8 91 10-100 23-125 (189)
241 cd04980 IgV_L_kappa Immunoglob 98.9 1.4E-08 3E-13 65.8 8.5 79 5-83 3-92 (106)
242 cd05880 Ig_EVA1 Immunoglobulin 98.9 2.6E-08 5.6E-13 65.3 9.6 79 8-86 4-103 (115)
243 cd04982 IgV_TCR_gamma Immunogl 98.9 2E-08 4.4E-13 66.2 9.0 78 6-83 2-98 (116)
244 PF13895 Ig_2: Immunoglobulin 98.9 9E-09 1.9E-13 63.0 6.9 33 116-149 9-41 (80)
245 cd05741 Ig_CEACAM_D1_like Firs 98.9 1.9E-08 4.2E-13 63.4 8.5 68 17-86 1-81 (92)
246 cd05881 Ig1_Necl-2 First (N-te 98.9 3.5E-08 7.6E-13 61.6 9.4 31 114-145 5-35 (95)
247 cd05711 Ig_FcalphaRI Immunoglo 98.9 2.6E-08 5.7E-13 62.7 8.7 75 2-82 1-75 (94)
248 cd05718 Ig1_PVR_like First imm 98.9 2.8E-08 6E-13 63.5 8.7 80 18-97 1-98 (98)
249 cd05755 Ig2_ICAM-1_like Second 98.9 3.7E-08 8.1E-13 61.8 8.8 81 3-86 2-86 (100)
250 cd05775 Ig_SLAM-CD84_like_N N- 98.8 1.3E-08 2.8E-13 64.5 6.3 82 15-96 2-96 (97)
251 cd05896 Ig1_IL1RAPL-1_like Fir 98.8 1.3E-08 2.9E-13 63.6 6.1 35 116-150 10-54 (104)
252 cd05715 Ig_P0-like Immunoglobu 98.8 1.1E-07 2.3E-12 62.7 10.5 79 8-86 4-104 (116)
253 cd05887 Ig1_Nectin-3_like Firs 98.8 5.8E-08 1.3E-12 60.7 8.5 80 18-97 1-96 (96)
254 PF07686 V-set: Immunoglobulin 98.8 2.2E-08 4.8E-13 65.9 7.0 80 5-84 4-101 (114)
255 cd05883 Ig2_Necl-2 Second immu 98.8 1.7E-07 3.6E-12 56.4 9.8 77 20-97 2-80 (82)
256 cd05901 Ig_Versican Immunoglob 98.8 1.3E-07 2.7E-12 61.1 9.7 39 60-98 77-115 (117)
257 cd04984 IgV_L_lambda Immunoglo 98.8 4.8E-08 1E-12 62.3 7.8 71 13-83 2-84 (98)
258 cd05888 Ig1_Nectin-4_like Frst 98.8 9.4E-08 2E-12 61.0 9.1 78 19-96 2-99 (100)
259 cd05872 Ig_Sema4B_like Immunog 98.8 3.6E-08 7.8E-13 60.0 6.7 63 115-184 5-67 (85)
260 cd05886 Ig1_Nectin-1_like Firs 98.8 1.3E-07 2.9E-12 59.7 9.3 78 19-96 2-98 (99)
261 cd07705 Ig2_Necl-1 Second immu 98.8 2.8E-07 6E-12 56.4 10.4 27 124-150 2-28 (83)
262 cd05714 Ig_CSPGs_LP Immunoglob 98.8 1.6E-07 3.4E-12 60.9 9.8 39 200-238 65-103 (106)
263 cd00099 IgV Immunoglobulin var 98.8 6.9E-08 1.5E-12 62.5 8.1 74 13-86 2-91 (105)
264 cd05902 Ig_Neurocan Immunoglob 98.8 9.3E-08 2E-12 61.6 8.3 82 17-98 2-108 (110)
265 cd04983 IgV_TCR_alpha_like Imm 98.7 1.3E-07 2.8E-12 61.6 8.6 32 113-145 5-36 (109)
266 cd05877 Ig_LP_like Immunoglobu 98.7 1.6E-07 3.5E-12 60.8 8.9 37 202-238 67-103 (106)
267 cd07705 Ig2_Necl-1 Second immu 98.7 3.1E-07 6.7E-12 56.2 9.4 65 20-86 2-70 (83)
268 cd05751 Ig1_LILRB1_like First 98.7 1.6E-07 3.5E-12 58.8 8.2 65 116-186 11-75 (91)
269 cd05761 Ig2_Necl-1-4_like Seco 98.7 2.2E-07 4.9E-12 56.8 8.6 26 124-149 2-27 (82)
270 cd07706 IgV_TCR_delta Immunogl 98.7 1.6E-07 3.5E-12 61.9 8.4 79 5-83 2-93 (116)
271 cd05761 Ig2_Necl-1-4_like Seco 98.7 3E-07 6.4E-12 56.3 8.7 66 20-87 2-70 (82)
272 cd05884 Ig2_Necl-3 Second immu 98.7 2.7E-07 6E-12 56.3 8.5 68 20-87 2-71 (83)
273 cd05716 Ig_pIgR Immunoglobulin 98.7 1.9E-07 4.1E-12 59.5 8.1 70 12-84 2-86 (98)
274 cd00098 IgC Immunoglobulin Con 98.7 1E-07 2.2E-12 60.5 6.8 72 15-86 11-86 (95)
275 cd05755 Ig2_ICAM-1_like Second 98.7 2.8E-07 6E-12 57.9 8.5 34 117-150 12-47 (100)
276 cd05899 IgV_TCR_beta Immunoglo 98.7 2E-07 4.2E-12 60.8 8.1 31 113-145 5-35 (110)
277 cd05889 Ig1_DNAM-1_like First 98.7 2.7E-07 5.9E-12 57.8 8.3 77 18-94 1-93 (96)
278 cd00098 IgC Immunoglobulin Con 98.7 2.4E-07 5.2E-12 58.7 8.3 75 119-227 11-86 (95)
279 cd07694 Ig2_CD4 Second immunog 98.7 3.1E-07 6.7E-12 55.2 8.0 77 11-97 8-86 (88)
280 cd05900 Ig_Aggrecan Immunoglob 98.7 5.5E-07 1.2E-11 58.3 9.7 38 201-238 72-109 (112)
281 cd05879 Ig_P0 Immunoglobulin ( 98.7 1.1E-06 2.3E-11 57.4 11.1 27 201-227 78-104 (116)
282 cd05712 Ig_Siglec_N Immunoglob 98.6 3.3E-07 7.2E-12 60.6 8.8 77 7-83 4-101 (119)
283 cd05884 Ig2_Necl-3 Second immu 98.6 3.9E-07 8.4E-12 55.7 8.2 27 124-150 2-28 (83)
284 cd07699 IgC_L Immunoglobulin C 98.6 2.4E-07 5.3E-12 58.9 7.3 84 2-86 1-90 (100)
285 cd05878 Ig_Aggrecan_like Immun 98.6 9.7E-07 2.1E-11 57.3 9.8 38 201-238 70-107 (110)
286 cd00099 IgV Immunoglobulin var 98.6 3.1E-07 6.7E-12 59.5 7.5 28 117-145 2-30 (105)
287 cd05770 IgC_beta2m Class I maj 98.6 2.3E-06 4.9E-11 53.3 10.8 81 2-85 1-83 (93)
288 cd07699 IgC_L Immunoglobulin C 98.6 4.7E-07 1E-11 57.6 7.5 76 117-226 13-89 (100)
289 cd07700 IgV_CD8_beta Immunoglo 98.6 1.1E-06 2.4E-11 56.9 9.4 70 13-82 2-92 (107)
290 PHA02987 Ig domain OX-2-like p 98.6 9.4E-07 2E-11 61.0 9.0 98 115-240 24-124 (189)
291 cd05772 IgC_SIRP Signal-regula 98.5 3.3E-06 7.2E-11 54.6 10.5 34 117-150 17-51 (111)
292 cd04982 IgV_TCR_gamma Immunogl 98.5 1.1E-06 2.5E-11 57.9 8.6 32 113-145 5-38 (116)
293 cd05767 IgC_MHC_II_alpha Class 98.5 4.7E-06 1E-10 52.1 10.8 79 2-85 1-84 (94)
294 cd05847 IgC_CH2_IgE CH2 domain 98.5 1.3E-06 2.8E-11 54.7 8.3 81 7-87 4-88 (94)
295 cd07698 IgC_MHC_I_alpha3 Class 98.5 3.2E-06 6.9E-11 53.1 10.1 81 2-86 2-84 (93)
296 cd05720 Ig_CD8_alpha Immunoglo 98.5 6.6E-07 1.4E-11 57.5 7.1 70 13-82 2-89 (104)
297 cd05880 Ig_EVA1 Immunoglobulin 98.5 8.6E-06 1.9E-10 53.4 12.3 94 114-227 6-103 (115)
298 cd05886 Ig1_Nectin-1_like Firs 98.5 1.9E-06 4.1E-11 54.5 8.7 37 201-237 61-98 (99)
299 cd05772 IgC_SIRP Signal-regula 98.5 2.6E-06 5.6E-11 55.1 9.4 74 12-86 16-93 (111)
300 cd05741 Ig_CEACAM_D1_like Firs 98.5 6.9E-07 1.5E-11 56.2 6.6 24 203-226 57-80 (92)
301 smart00407 IGc1 Immunoglobulin 98.5 2.5E-06 5.3E-11 51.2 8.5 26 124-149 2-28 (75)
302 PF13927 Ig_3: Immunoglobulin 98.5 2.7E-07 5.8E-12 55.6 4.3 58 124-185 18-75 (75)
303 cd04981 IgV_H Immunoglobulin ( 98.5 1.3E-06 2.8E-11 57.4 7.8 77 7-83 2-97 (117)
304 cd05718 Ig1_PVR_like First imm 98.5 2E-06 4.4E-11 54.8 8.5 36 202-237 61-97 (98)
305 cd05713 Ig_MOG_like Immunoglob 98.5 1.2E-06 2.7E-11 56.0 7.5 36 202-237 64-99 (100)
306 cd05715 Ig_P0-like Immunoglobu 98.5 8.9E-06 1.9E-10 53.5 11.6 26 202-227 79-104 (116)
307 cd05887 Ig1_Nectin-3_like Firs 98.5 2.4E-06 5.3E-11 53.5 8.4 37 201-237 58-95 (96)
308 cd05766 IgC_MHC_II_beta Class 98.5 8.9E-06 1.9E-10 51.0 10.9 73 14-87 11-85 (94)
309 cd05846 Ig1_MRC-OX-2_like Firs 98.4 2.3E-06 4.9E-11 54.3 8.3 37 201-237 59-96 (97)
310 smart00407 IGc1 Immunoglobulin 98.4 4.9E-06 1.1E-10 49.9 9.2 67 19-85 1-71 (75)
311 cd05774 Ig_CEACAM_D1 First imm 98.4 2.6E-06 5.7E-11 54.4 8.3 34 202-235 69-103 (105)
312 PHA03269 envelope glycoprotein 98.4 3.7E-05 8E-10 60.9 16.0 81 61-150 288-373 (566)
313 PF08205 C2-set_2: CD80-like C 98.4 7.3E-07 1.6E-11 55.7 5.7 82 3-87 1-86 (89)
314 cd05902 Ig_Neurocan Immunoglob 98.4 3.8E-06 8.2E-11 54.2 8.8 38 201-238 70-107 (110)
315 cd04980 IgV_L_kappa Immunoglob 98.4 2.7E-06 5.8E-11 55.0 8.3 32 113-145 7-39 (106)
316 cd05901 Ig_Versican Immunoglob 98.4 6.7E-06 1.5E-10 53.2 9.9 38 201-238 77-114 (117)
317 cd00096 Ig Immunoglobulin doma 98.4 3.9E-06 8.4E-11 49.6 8.6 66 20-85 1-66 (74)
318 cd05711 Ig_FcalphaRI Immunoglo 98.4 2.4E-06 5.2E-11 53.7 7.1 31 115-147 9-39 (94)
319 cd05769 IgC_TCR_beta T cell re 98.4 3.8E-06 8.3E-11 54.5 7.8 88 2-89 2-96 (115)
320 cd04984 IgV_L_lambda Immunoglo 98.4 4E-06 8.6E-11 53.4 7.8 28 117-145 2-31 (98)
321 cd05768 IgC_CH4 CH4 domain (fo 98.3 2.8E-06 6.1E-11 54.1 6.9 80 7-86 6-92 (102)
322 PHA03270 envelope glycoprotein 98.3 5.9E-05 1.3E-09 58.9 14.9 79 63-150 183-265 (466)
323 cd05775 Ig_SLAM-CD84_like_N N- 98.3 3.5E-06 7.6E-11 53.4 7.1 93 120-237 3-96 (97)
324 cd05716 Ig_pIgR Immunoglobulin 98.3 5.5E-06 1.2E-10 52.8 7.5 30 116-145 2-31 (98)
325 cd07706 IgV_TCR_delta Immunogl 98.3 6.6E-06 1.4E-10 54.2 8.0 31 114-144 7-37 (116)
326 cd07694 Ig2_CD4 Second immunog 98.3 6.3E-06 1.4E-10 49.6 6.8 64 116-186 9-73 (88)
327 cd05888 Ig1_Nectin-4_like Frst 98.2 1.8E-05 3.9E-10 50.4 9.0 37 201-237 62-99 (100)
328 cd04985 IgC_CH1 CH1 domain (fi 98.2 2E-05 4.2E-10 49.5 8.9 79 5-85 5-87 (95)
329 PHA02914 Immunoglobulin-like d 98.2 0.0012 2.6E-08 51.3 20.8 76 202-282 345-422 (500)
330 cd05847 IgC_CH2_IgE CH2 domain 98.2 9.8E-06 2.1E-10 50.7 7.3 30 120-149 13-43 (94)
331 PF07654 C1-set: Immunoglobuli 98.2 2.7E-05 6E-10 47.7 9.0 67 16-86 7-78 (83)
332 cd07697 IgC_TCR_gamma T cell r 98.2 2.3E-05 5E-10 49.1 8.6 75 8-85 7-85 (96)
333 cd05766 IgC_MHC_II_beta Class 98.2 3.7E-05 7.9E-10 48.3 9.5 33 119-151 12-45 (94)
334 cd05768 IgC_CH4 CH4 domain (fo 98.2 1.5E-05 3.2E-10 50.9 7.9 34 117-150 12-46 (102)
335 cd05889 Ig1_DNAM-1_like First 98.2 1.5E-05 3.3E-10 50.0 7.7 35 201-235 58-93 (96)
336 PHA03271 envelope glycoprotein 98.2 0.00089 1.9E-08 52.3 18.4 81 62-150 207-291 (490)
337 cd07696 IgC_CH3 CH3 domain (th 98.2 3E-05 6.5E-10 48.8 8.9 31 116-146 9-41 (96)
338 PF07686 V-set: Immunoglobulin 98.2 1.4E-05 3E-10 52.4 7.9 94 113-225 8-101 (114)
339 KOG1480|consensus 98.2 1.6E-06 3.5E-11 72.0 3.7 202 3-223 25-236 (909)
340 cd07700 IgV_CD8_beta Immunoglo 98.2 1.5E-05 3.2E-10 51.6 7.5 28 117-144 2-29 (107)
341 cd07696 IgC_CH3 CH3 domain (th 98.2 7.9E-06 1.7E-10 51.4 5.9 78 7-86 4-87 (96)
342 PF08205 C2-set_2: CD80-like C 98.1 7.7E-06 1.7E-10 51.0 5.5 28 121-148 14-41 (89)
343 cd05721 IgV_CTLA-4 Immunoglobu 98.1 4.1E-05 8.9E-10 49.0 8.2 76 6-81 2-93 (115)
344 cd05770 IgC_beta2m Class I maj 98.1 5E-05 1.1E-09 47.3 8.3 30 120-149 14-44 (93)
345 PHA03273 envelope glycoprotein 98.1 0.00046 9.9E-09 54.7 15.0 79 62-149 198-280 (486)
346 smart00406 IGv Immunoglobulin 98.1 1.3E-05 2.8E-10 49.0 5.5 63 19-81 1-81 (81)
347 cd05767 IgC_MHC_II_alpha Class 98.1 0.00013 2.8E-09 45.7 9.7 31 120-150 14-45 (94)
348 cd00096 Ig Immunoglobulin doma 98.0 3.7E-05 8.1E-10 45.2 7.2 63 124-187 1-66 (74)
349 PF07654 C1-set: Immunoglobuli 98.0 5.2E-05 1.1E-09 46.5 7.8 33 119-151 6-39 (83)
350 cd05769 IgC_TCR_beta T cell re 98.0 3E-05 6.5E-10 50.4 7.0 35 117-151 14-49 (115)
351 PHA03270 envelope glycoprotein 98.0 0.0007 1.5E-08 53.2 15.2 81 202-283 181-265 (466)
352 cd05712 Ig_Siglec_N Immunoglob 98.0 6.7E-05 1.5E-09 49.6 8.7 33 113-145 6-43 (119)
353 cd05719 Ig2_PVR_like Second im 98.0 9.6E-05 2.1E-09 46.4 8.7 80 5-88 3-85 (95)
354 cd07698 IgC_MHC_I_alpha3 Class 98.0 0.00011 2.4E-09 46.1 8.9 27 121-147 14-41 (93)
355 cd07703 Ig2_Nectin-2_like Seco 98.0 0.00013 2.8E-09 45.7 9.0 23 122-144 16-38 (95)
356 PHA02982 hypothetical protein; 98.0 0.0007 1.5E-08 47.7 13.2 122 11-146 33-172 (251)
357 cd05720 Ig_CD8_alpha Immunoglo 98.0 4.9E-05 1.1E-09 48.9 6.9 28 117-145 2-29 (104)
358 cd04986 IgC_CH2 CH2 domain (se 97.9 2.3E-05 5E-10 49.2 4.9 82 2-86 3-90 (99)
359 cd07703 Ig2_Nectin-2_like Seco 97.9 0.00017 3.6E-09 45.2 8.7 71 17-91 15-88 (95)
360 cd05719 Ig2_PVR_like Second im 97.9 0.00023 4.9E-09 44.7 9.0 23 122-144 16-38 (95)
361 cd07704 Ig2_Nectin-3-4_like Se 97.9 0.00024 5.3E-09 44.4 8.4 33 113-145 8-41 (97)
362 cd07689 Ig2_VCAM-1 Second immu 97.8 0.00012 2.7E-09 45.3 6.7 77 2-82 3-83 (99)
363 cd04981 IgV_H Immunoglobulin ( 97.8 0.00016 3.5E-09 47.5 7.8 32 113-144 4-36 (117)
364 cd07697 IgC_TCR_gamma T cell r 97.8 0.00039 8.5E-09 43.6 8.9 33 118-150 13-46 (96)
365 cd04985 IgC_CH1 CH1 domain (fi 97.8 0.00023 5.1E-09 44.7 7.6 28 120-147 15-43 (95)
366 cd07704 Ig2_Nectin-3-4_like Se 97.8 0.00036 7.8E-09 43.6 8.2 74 12-87 11-86 (97)
367 cd04986 IgC_CH2 CH2 domain (se 97.8 0.00015 3.3E-09 45.6 6.4 31 117-147 15-47 (99)
368 cd07689 Ig2_VCAM-1 Second immu 97.7 0.00036 7.8E-09 43.3 7.0 35 117-151 11-47 (99)
369 cd07692 Ig_CD3_epsilon Immunog 97.7 0.0002 4.4E-09 40.5 5.2 51 14-82 4-54 (65)
370 smart00406 IGv Immunoglobulin 97.6 0.00028 6.1E-09 42.9 5.8 22 201-222 60-81 (81)
371 PHA02633 hypothetical protein; 97.5 0.0004 8.7E-09 38.5 4.9 38 63-100 19-56 (63)
372 cd07692 Ig_CD3_epsilon Immunog 97.5 0.00033 7.1E-09 39.7 4.5 50 120-185 6-55 (65)
373 PHA03271 envelope glycoprotein 97.5 0.015 3.3E-07 45.8 14.7 79 2-82 247-332 (490)
374 PF08204 V-set_CD47: CD47 immu 97.5 0.00013 2.7E-09 47.9 3.0 81 15-96 25-119 (130)
375 PHA02982 hypothetical protein; 97.4 0.0027 5.8E-08 44.8 8.8 137 116-280 34-173 (251)
376 cd07691 Ig_CD3_gamma_delta Imm 97.3 0.0015 3.2E-08 37.3 5.6 60 17-98 6-65 (69)
377 cd07691 Ig_CD3_gamma_delta Imm 97.3 0.0014 3.1E-08 37.4 5.6 50 120-185 5-54 (69)
378 PHA02914 Immunoglobulin-like d 97.3 0.033 7.1E-07 43.7 14.3 125 10-148 272-421 (500)
379 PHA03273 envelope glycoprotein 97.2 0.0034 7.4E-08 50.0 8.8 79 203-282 198-280 (486)
380 PHA03269 envelope glycoprotein 97.2 0.0029 6.3E-08 50.6 8.1 81 202-283 288-373 (566)
381 KOG0613|consensus 97.1 0.0043 9.2E-08 55.7 9.3 179 63-281 279-480 (1205)
382 TIGR00864 PCC polycystin catio 97.0 0.46 9.9E-06 47.5 21.4 192 10-278 1705-1905(2740)
383 cd05721 IgV_CTLA-4 Immunoglobu 96.8 0.018 4E-07 37.1 8.2 86 115-224 7-95 (115)
384 PHA02633 hypothetical protein; 96.7 0.0047 1E-07 34.4 4.0 37 203-239 18-54 (63)
385 PHA03042 CD47-like protein; Pr 96.6 0.014 3.1E-07 43.2 7.4 69 15-95 29-103 (286)
386 PF08204 V-set_CD47: CD47 immu 96.3 0.0012 2.5E-08 43.5 0.4 92 118-239 24-121 (130)
387 KOG4597|consensus 96.2 0.008 1.7E-07 48.1 4.5 93 4-99 198-294 (560)
388 PF06328 Lep_receptor_Ig: Ig-l 96.0 0.097 2.1E-06 32.3 7.6 69 8-82 9-82 (89)
389 PF07354 Sp38: Zona-pellucida- 95.9 0.098 2.1E-06 38.9 8.6 52 135-190 11-63 (271)
390 KOG1480|consensus 95.7 0.0053 1.1E-07 52.1 1.6 74 6-87 133-208 (909)
391 PF11465 Receptor_2B4: Natural 95.6 0.098 2.1E-06 33.0 6.6 35 62-96 71-106 (108)
392 PHA02865 MHC-like TNF binding 95.6 0.12 2.6E-06 40.3 8.2 21 19-39 216-238 (338)
393 KOG0613|consensus 95.5 0.12 2.5E-06 47.2 8.9 153 122-284 206-379 (1205)
394 PHA03042 CD47-like protein; Pr 95.3 0.14 3E-06 38.3 7.3 68 120-195 30-101 (286)
395 PF07354 Sp38: Zona-pellucida- 95.0 0.048 1E-06 40.4 4.4 46 31-84 12-59 (271)
396 PF03921 ICAM_N: Intercellular 94.7 0.56 1.2E-05 29.0 9.9 85 4-100 5-89 (91)
397 PHA02865 MHC-like TNF binding 94.2 0.24 5.1E-06 38.7 6.6 22 123-144 216-238 (338)
398 PF02124 Marek_A: Marek's dise 94.0 1.7 3.8E-05 31.6 15.8 52 31-82 6-60 (211)
399 PF06328 Lep_receptor_Ig: Ig-l 93.9 0.76 1.6E-05 28.4 7.3 64 116-182 13-80 (89)
400 KOG4597|consensus 93.8 0.37 8E-06 39.1 7.2 86 115-201 205-294 (560)
401 PHA03286 envelope glycoprotein 93.8 3.1 6.7E-05 33.9 12.8 83 62-144 127-226 (492)
402 PHA03052 Hypothetical protein; 93.7 0.22 4.8E-06 28.4 4.2 33 251-283 9-43 (69)
403 cd05890 Ig2_Nectin-1_like Seco 93.3 1.2 2.6E-05 27.7 7.6 20 124-143 23-42 (98)
404 TIGR00864 PCC polycystin catio 93.3 11 0.00024 38.8 23.4 70 69-145 1834-1905(2740)
405 PHA03189 UL14 tegument protein 93.1 1.5 3.1E-05 33.6 8.9 22 8-29 58-79 (348)
406 PF06832 BiPBP_C: Penicillin-B 92.2 1.7 3.6E-05 26.9 7.2 71 2-88 10-84 (89)
407 PF11465 Receptor_2B4: Natural 92.0 0.072 1.6E-06 33.6 0.9 24 165-188 72-95 (108)
408 PHA03052 Hypothetical protein; 91.9 0.65 1.4E-05 26.5 4.5 35 114-148 5-41 (69)
409 cd05890 Ig2_Nectin-1_like Seco 90.1 3.1 6.8E-05 25.9 7.3 66 22-93 25-95 (98)
410 PF05790 C2-set: Immunoglobuli 90.0 2.9 6.2E-05 25.3 7.2 19 64-82 45-63 (80)
411 PHA03112 IL-18 binding protein 89.7 1.2 2.6E-05 30.0 4.9 73 14-86 35-120 (141)
412 PHA03240 envelope glycoprotein 86.5 1.5 3.2E-05 31.6 4.1 28 11-38 32-59 (258)
413 PF05790 C2-set: Immunoglobuli 83.5 2.4 5.3E-05 25.6 3.6 17 206-222 46-62 (80)
414 PHA03283 envelope glycoprotein 83.0 27 0.00059 29.5 12.9 83 62-144 134-234 (542)
415 KOG1026|consensus 81.5 5.3 0.00011 35.4 6.1 153 12-192 202-356 (774)
416 PHA03240 envelope glycoprotein 81.4 9.9 0.00021 27.6 6.4 28 115-143 32-59 (258)
417 PHA03282 envelope glycoprotein 81.3 30 0.00065 28.8 11.8 24 202-225 332-355 (540)
418 PHA03283 envelope glycoprotein 79.2 25 0.00053 29.7 8.8 28 251-278 204-235 (542)
419 PF05955 Herpes_gp2: Equine he 76.5 24 0.00052 24.9 12.0 161 20-187 4-179 (226)
420 PHA03112 IL-18 binding protein 73.8 19 0.0004 24.5 5.7 28 251-278 35-63 (141)
421 PF10572 UPF0556: Uncharacteri 71.0 18 0.00039 24.9 5.2 41 177-227 44-84 (158)
422 PF02124 Marek_A: Marek's dise 67.2 48 0.001 24.5 9.7 23 258-281 93-117 (211)
423 PRK14081 triple tyrosine motif 66.6 96 0.0021 27.7 22.6 208 13-285 301-529 (667)
424 PF11141 DUF2914: Protein of u 66.1 23 0.00051 20.4 7.4 59 32-96 7-65 (66)
425 PF05955 Herpes_gp2: Equine he 65.7 40 0.00086 23.9 6.1 60 24-83 114-177 (226)
426 KOG1026|consensus 61.7 1.2 2.6E-05 39.2 -2.0 164 116-283 62-235 (774)
427 KOG0200|consensus 57.5 1.4E+02 0.003 26.5 11.8 22 62-83 13-34 (609)
428 PHA03281 envelope glycoprotein 57.2 1.3E+02 0.0028 26.0 9.1 77 202-278 297-396 (642)
429 PF03921 ICAM_N: Intercellular 57.0 46 0.00099 20.8 8.0 18 113-130 10-27 (91)
430 PF06832 BiPBP_C: Penicillin-B 56.5 44 0.00096 20.5 8.7 25 123-149 31-55 (89)
431 PF09085 Adhes-Ig_like: Adhesi 53.2 39 0.00084 21.2 3.9 39 4-44 5-48 (110)
432 PF02480 Herpes_gE: Alphaherpe 51.9 12 0.00025 31.3 2.1 82 62-143 89-189 (439)
433 PHA03189 UL14 tegument protein 51.4 1.2E+02 0.0026 23.9 9.4 25 209-233 139-164 (348)
434 PHA02935 Hypothetical protein; 50.9 72 0.0016 23.1 5.6 56 31-86 66-126 (349)
435 PHA03286 envelope glycoprotein 50.9 1.5E+02 0.0032 24.9 8.7 28 251-278 196-227 (492)
436 PF01688 Herpes_gI: Alphaherpe 49.3 47 0.001 23.3 4.4 24 62-85 124-147 (161)
437 PF00801 PKD: PKD domain; Int 47.6 53 0.0012 18.8 5.5 29 116-145 6-34 (69)
438 PF02440 Adeno_E3_CR1: Adenovi 46.0 57 0.0012 18.7 4.8 21 14-38 2-22 (63)
439 PF11049 KSHV_K1: Glycoprotein 45.8 15 0.00033 21.0 1.3 21 258-281 2-22 (71)
440 PF10430 Ig_Tie2_1: Tie-2 Ig-l 39.4 93 0.002 19.2 8.5 75 6-82 6-83 (96)
441 PF01688 Herpes_gI: Alphaherpe 36.9 92 0.002 21.9 4.3 25 164-188 124-148 (161)
442 PHA03281 envelope glycoprotein 35.4 3E+02 0.0065 23.9 9.7 83 62-144 298-395 (642)
443 PHA03282 envelope glycoprotein 35.0 1E+02 0.0022 26.0 4.8 29 251-279 225-258 (540)
444 PRK14081 triple tyrosine motif 34.6 3.5E+02 0.0076 24.4 20.7 106 12-133 396-509 (667)
445 smart00089 PKD Repeats in poly 33.8 1E+02 0.0022 18.1 7.7 28 13-40 10-38 (79)
446 PF02010 REJ: REJ domain; Int 33.6 14 0.0003 30.9 0.0 46 230-276 290-340 (440)
447 PHA03290 envelope glycoprotein 31.6 1.2E+02 0.0026 24.2 4.6 25 62-86 129-153 (357)
448 smart00635 BID_2 Bacterial Ig- 31.1 1.2E+02 0.0026 18.1 4.8 39 4-42 4-45 (81)
449 PF08239 SH3_3: Bacterial SH3 30.2 95 0.0021 16.6 4.2 29 235-263 3-31 (55)
450 PF13220 DUF4028: Protein of u 30.0 58 0.0012 17.6 1.9 16 174-189 8-23 (65)
451 PF03174 CHB_HEX_C: Chitobiase 27.3 1.4E+02 0.003 17.5 4.9 34 6-42 4-37 (75)
452 PHA03289 envelope glycoprotein 26.8 1.7E+02 0.0036 23.3 4.6 25 62-86 122-146 (352)
453 PF03628 PapG_C: PapG chaperon 26.1 1.9E+02 0.004 18.6 4.0 51 121-174 15-65 (108)
454 PHA03290 envelope glycoprotein 25.8 1.7E+02 0.0037 23.4 4.5 28 163-190 128-155 (357)
455 PHA03292 envelope glycoprotein 25.8 1.6E+02 0.0034 24.1 4.4 24 62-85 128-151 (413)
456 KOG3265|consensus 23.1 1.2E+02 0.0026 22.7 3.1 26 16-41 90-116 (250)
457 KOG0200|consensus 22.4 2.9E+02 0.0062 24.7 5.9 23 202-224 12-34 (609)
458 PF02480 Herpes_gE: Alphaherpe 22.3 54 0.0012 27.6 1.5 21 64-84 271-291 (439)
459 PF11327 DUF3129: Protein of u 22.2 3.1E+02 0.0068 19.9 5.1 26 59-84 90-115 (184)
460 PHA03291 envelope glycoprotein 20.8 2.4E+02 0.0051 22.9 4.4 36 62-97 129-164 (401)
461 PF01333 Apocytochr_F_C: Apocy 20.4 2.3E+02 0.0049 18.7 3.6 58 206-267 12-69 (118)
No 1
>KOG3513|consensus
Probab=100.00 E-value=6.7e-39 Score=266.99 Aligned_cols=260 Identities=30% Similarity=0.529 Sum_probs=219.6
Q ss_pred CCcceeecc-eeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEE
Q psy14540 2 HPQLIYKFI-QQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCT 80 (291)
Q Consensus 2 ~p~~~~~~~-~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~ 80 (291)
+|.|.+.+. ......|+.+.|.|.+.|.|.|+|.|.|.+......+... .+....|.|.+++.+|+|.|+|.
T Consensus 240 ~P~i~~~~p~~~~a~~G~~v~LECfA~G~P~P~i~W~k~~g~~~~~r~~~-------~~~~~vL~I~nv~~~D~G~Y~C~ 312 (1051)
T KOG3513|consen 240 APKILVPFPETETALKGQSVKLECFALGNPTPQIKWRKVDGKPPPRRATY-------SNYGKVLKIPNVQYEDAGEYECI 312 (1051)
T ss_pred CCccccCCCCcccccCCCeEEEEEEecCCCCCcEEEEeCCCCCCCcceee-------eccccEEEecccCcCCCeEEEEE
Confidence 566665544 5677899999999999999999999999766332222222 12224599999999999999999
Q ss_pred EeCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCc---eEEe
Q psy14540 81 ATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAE---ITIR 157 (291)
Q Consensus 81 ~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~---~~~~ 157 (291)
+.|..|.......+.|...|. .+..+....+..|+++.+.|.+ .|.|.|+++|++||.++....+ ..+.
T Consensus 313 AeN~~G~~~~~~~v~v~a~P~-------w~~~~~d~~~~~gs~v~~eC~a-~g~P~p~v~WlkNg~pl~~~~r~~~~~i~ 384 (1051)
T KOG3513|consen 313 AENSRGSATHSGHVTVYAPPY-------WLQKPQDTEADTGSNVTLECKA-SGKPNPTVKWLKNGEPLEPAERDPRYKID 384 (1051)
T ss_pred EecccccceeeEEEEEecCch-------hhcccceeEecCCCCeEEEEEe-cCCCCCceEEeeCCeecCccCCCcceEEe
Confidence 999999999999999998773 2346677888899999999999 7999999999999999986665 4444
Q ss_pred ccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEec-------------------------------------
Q psy14540 158 SSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNE------------------------------------- 200 (291)
Q Consensus 158 ~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~------------------------------------- 200 (291)
...|.|.++...|+|.|.|.|+|..|....++.|.+..
T Consensus 385 -----~g~L~is~v~~~dsg~YQC~A~Nk~G~i~anA~L~V~a~~P~f~~~p~~~~~~a~~g~~v~i~C~~~asP~p~~~ 459 (1051)
T KOG3513|consen 385 -----DGTLIISNVQESDSGVYQCIAENKYGTIYANAELKVLASAPVFPLNPVERKVMAVVGGTVTIDCKPFASPKPKVS 459 (1051)
T ss_pred -----CCEEEEEecccccCeEEEeeeecccceEeeeeEEEEEccCCCCCCCccceEEEEEeCCeEEEeeccCCCCcceEE
Confidence 56799999999999999999999999888887777221
Q ss_pred -----------------cceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCCCCCCCCccc-ccCCceEEEEEE
Q psy14540 201 -----------------YTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGPFTFGE-LMEGVRTQVACV 262 (291)
Q Consensus 201 -----------------~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~-~~~g~~v~l~C~ 262 (291)
.+++|.|.+++.+|+|.|+|.|.|..|.......|.|..++.|...+... +..|+.++|+|.
T Consensus 460 W~k~~~~~~~~~r~~i~edGtL~I~n~t~~DaG~YtC~A~N~~G~a~~~~~L~Vkd~tri~~~P~~~~v~~g~~v~l~Ce 539 (1051)
T KOG3513|consen 460 WLKGGEKLLQSGRIRILEDGTLEISNVTRSDAGKYTCVAENKLGKAESTGNLIVKDATRITLAPSNTDVKVGESVTLTCE 539 (1051)
T ss_pred EEcCCcccccCceEEECCCCcEEecccCcccCcEEEEEEEcccCccceEEEEEEecCceEEeccchhhhccCceEEEEee
Confidence 17999999999999999999999999999999999999999999977776 999999999999
Q ss_pred eecCCC--CceEEEEECCEEcc
Q psy14540 263 VQSGDL--PLSLQWYKNGLAIS 282 (291)
Q Consensus 263 ~~~~~p--~~~v~W~~~~~~l~ 282 (291)
+ ..++ ...|.|.+||..+.
T Consensus 540 ~-shD~~ld~~f~W~~nG~~id 560 (1051)
T KOG3513|consen 540 A-SHDPSLDITFTWKKNGRPID 560 (1051)
T ss_pred c-ccCCCcceEEEEEECCEEhh
Confidence 9 6555 46899999999874
No 2
>KOG3513|consensus
Probab=100.00 E-value=4.3e-31 Score=220.74 Aligned_cols=264 Identities=25% Similarity=0.431 Sum_probs=200.9
Q ss_pred Ccceeecceeee-ecCC--cEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecC-CCCCeEEE
Q psy14540 3 PQLIYKFIQQTL-QPGP--PVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVR-VEDSGIYQ 78 (291)
Q Consensus 3 p~~~~~~~~~~v-~~g~--~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~G~y~ 78 (291)
|.|...+....+ .+-+ .+.|.|.+.++|.+.++|++||.......+..... . ..+|.|.+.. ..|.|.|+
T Consensus 40 P~f~~q~~~~~~~~~~~~~~v~l~C~A~G~P~Psy~W~kng~~~d~~~~~~~~~--~----~G~lvI~~p~~~~d~G~Yq 113 (1051)
T KOG3513|consen 40 PVFVEQPNDVIVPFPSDDSSVTLNCEANGNPEPSYRWTKNGTEFDPTEYPRVSV--L----GGTLVITNPDAALDQGIYQ 113 (1051)
T ss_pred ceeeecCCceEEecccCCccEEEEEEecCCCCceeEEEECCeecccccccceee--e----cCceEecCCcchhhcceeE
Confidence 788877765443 3333 39999999999999999999999876222111111 1 2447787777 88999999
Q ss_pred EEEeCCCCc-eeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEecc-CCC--ce
Q psy14540 79 CTATNRVGS-QTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPIL-SDA--EI 154 (291)
Q Consensus 79 C~~~~~~~~-~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~-~~~--~~ 154 (291)
|.++|..|. .+..+.|.....+..+ ......+.+.+|+.+.|.|....+.|.+++.|..+..+.. ..+ +.
T Consensus 114 C~AsN~~Gta~S~~~~l~~~~i~~F~------~e~~~~v~v~eG~~~~L~C~pP~~~P~l~~~W~~~~~~~~~~~~~~r~ 187 (1051)
T KOG3513|consen 114 CFASNKLGTAVSREARLQFGFIPKFK------KEERSPVEVEEGDGVVLPCNPPAHFPPLRYYWMLNEFPHFVQIDNRRV 187 (1051)
T ss_pred EEeecccceeeccceeecccccccCc------cccCCcEEEEeCCceEEeCCCCCCCCCccEEehhccCCcccccCccee
Confidence 999999886 4556666655544332 1233457899999999999988889999999988654432 222 22
Q ss_pred EEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCC---CCceEEE----------------------------------
Q psy14540 155 TIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASD---NHSSNLR---------------------------------- 197 (291)
Q Consensus 155 ~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~---~~~~~~~---------------------------------- 197 (291)
... ..+.|.+..+...|.+.|.|.+.+..... ...+.|.
T Consensus 188 ~~~----~~G~Lyfs~V~~~D~~~Y~C~a~~~~~~~~v~~~~~~L~~~~~~~~~~~~P~i~~~~p~~~~a~~G~~v~LEC 263 (1051)
T KOG3513|consen 188 FSQ----ENGNLYFSNVETSDFGNYICSATFPSTQTIVQGPPFPLIVRSNNVMREYAPKILVPFPETETALKGQSVKLEC 263 (1051)
T ss_pred Eec----ccceEEEeecchhhcCceEEEEEchhhcccccCCceeEEEcccccccccCCccccCCCCcccccCCCeEEEEE
Confidence 222 25679999999999999999999843322 1122222
Q ss_pred -------------------------EeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCCCCCCCCccc-c
Q psy14540 198 -------------------------VNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGPFTFGE-L 251 (291)
Q Consensus 198 -------------------------~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~-~ 251 (291)
...+..+|.|.++..+|+|.|+|.|.|..|.......|.|..+|.+....... +
T Consensus 264 fA~G~P~P~i~W~k~~g~~~~~r~~~~~~~~vL~I~nv~~~D~G~Y~C~AeN~~G~~~~~~~v~v~a~P~w~~~~~d~~~ 343 (1051)
T KOG3513|consen 264 FALGNPTPQIKWRKVDGKPPPRRATYSNYGKVLKIPNVQYEDAGEYECIAENSRGSATHSGHVTVYAPPYWLQKPQDTEA 343 (1051)
T ss_pred EecCCCCCcEEEEeCCCCCCCcceeeeccccEEEecccCcCCCeEEEEEEecccccceeeEEEEEecCchhhcccceeEe
Confidence 33348999999999999999999999999999999999999999988877766 9
Q ss_pred cCCceEEEEEEeecCCCCceEEEEECCEEccC
Q psy14540 252 MEGVRTQVACVVQSGDLPLSLQWYKNGLAISQ 283 (291)
Q Consensus 252 ~~g~~v~l~C~~~~~~p~~~v~W~~~~~~l~~ 283 (291)
..|+.+++.|.+ .|.|.|+|+|++||.+|..
T Consensus 344 ~~gs~v~~eC~a-~g~P~p~v~WlkNg~pl~~ 374 (1051)
T KOG3513|consen 344 DTGSNVTLECKA-SGKPNPTVKWLKNGEPLEP 374 (1051)
T ss_pred cCCCCeEEEEEe-cCCCCCceEEeeCCeecCc
Confidence 999999999999 8999999999999998863
No 3
>KOG4222|consensus
Probab=99.96 E-value=1.3e-28 Score=204.76 Aligned_cols=269 Identities=26% Similarity=0.462 Sum_probs=203.2
Q ss_pred CCCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeec--CCCCCeEEE
Q psy14540 1 SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSV--RVEDSGIYQ 78 (291)
Q Consensus 1 s~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~--~~~d~G~y~ 78 (291)
++|.|+..|.++.+..|+.++|.|.+.+.|.+.++|+|+|+........ ..+........+-|.+..- ...|.|.|+
T Consensus 30 ~~p~iiehp~d~vvs~~~patlnc~asG~ppPti~w~k~G~~~~~~e~~-shR~~lp~gsLf~l~~ahg~~a~~d~G~y~ 108 (1281)
T KOG4222|consen 30 QPPRIIEHPHDLVVSKGEPATLNCKASGDPPPTIEWYKDGENVFKGEPG-SHRFLLPDGSLFLLRLAHGKKAGHDHGVYS 108 (1281)
T ss_pred CCCceEecchhhhccCCCCceeecCCCCCCCCceecccCCcccCCCCCC-CcceecCCccEEEEecccCCcccCCCceeE
Confidence 4799999999999999999999999999999999999999754311111 1111222222233443321 123899999
Q ss_pred EEEeCCCCc-eeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEe
Q psy14540 79 CTATNRVGS-QTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIR 157 (291)
Q Consensus 79 C~~~~~~~~-~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~ 157 (291)
|.+.+..|. .+....|.+..... .....+..+.+..|+.+.|.|.-..+.|.+.+.|.|+|.++.-.....+.
T Consensus 109 cvasn~~g~avSr~a~L~vavlrd------dfrv~prd~~~a~ge~avlEcgpP~ghpeptvSw~Kdg~pl~~~~~~~~~ 182 (1281)
T KOG4222|consen 109 CVASNRLGEAVSRGASLIVAVLRD------DFRVSPRDVQAAVGEEAVLECGPPRGHPEPTVSWVKDGKPLDHYDVPIIA 182 (1281)
T ss_pred eeecCccceeeecCceEEEEEech------hcccCcccccccccceeEEeccCCCCCCCCcceeecCCCccccccceeEE
Confidence 999988776 34455555544331 12233445677789999999998889999999999999988622221111
Q ss_pred ccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCc-eEEE---------------------------------------
Q psy14540 158 SSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHS-SNLR--------------------------------------- 197 (291)
Q Consensus 158 ~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~-~~~~--------------------------------------- 197 (291)
.. ..+.|.|.++...|.|.|.|++.|..|..... ..+.
T Consensus 183 li--sgG~LlIsnvrksD~GtY~CVatNmvG~ReS~~A~lsv~e~P~f~~rp~~~~v~~g~~~~f~c~v~GdP~P~Vrwk 260 (1281)
T KOG4222|consen 183 LI--SGGNLLISNVRKSDEGTYACVATNMVGERESIPARLSVQEKPWFWKRPKDLAVLVGAAAEFDCRVGGDPQPTVRWK 260 (1281)
T ss_pred Ee--cCCcEEEeccccCCCceeeeeecccccccccccceeeeccCCccccccccceeecccccccccccCCCCCCceeee
Confidence 11 14569999999999999999999998865432 2222
Q ss_pred ------------EeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCCCCCCCCccc-ccCCceEEEEEEee
Q psy14540 198 ------------VNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGPFTFGE-LMEGVRTQVACVVQ 264 (291)
Q Consensus 198 ------------~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~-~~~g~~v~l~C~~~ 264 (291)
+.....++.|..+.+.|+|.|.|.+.|..|...+...+.|+.+|.+...+... +..|..++|.|.+
T Consensus 261 k~~~~~P~~ry~i~~d~qtl~i~r~tp~deg~y~C~a~n~vG~l~asa~ltV~apP~f~kkp~dq~v~lg~~vt~pc~~- 339 (1281)
T KOG4222|consen 261 KDDPSLPRSRYSILDDTQTLRIDRVTPTDEGTYVCPAENLVGGLEASATLTVQAPPSFGKKPRDQKVALGGTVTFPCET- 339 (1281)
T ss_pred ccCCCCCccceeeeeccccccccccCCCcccceeeeccccccccccccceEEecCcccccccCccccccCceEEeeeec-
Confidence 11114788888999999999999999999999999999999999999988877 9999999999999
Q ss_pred cCCCCceEEEEECCE
Q psy14540 265 SGDLPLSLQWYKNGL 279 (291)
Q Consensus 265 ~~~p~~~v~W~~~~~ 279 (291)
.+.|+|.+.|.+.|.
T Consensus 340 ~gnP~PavfW~keg~ 354 (1281)
T KOG4222|consen 340 LGNPPPAVFWLKEGS 354 (1281)
T ss_pred CCCCCcceEEeccCc
Confidence 899999999999875
No 4
>KOG4194|consensus
Probab=99.96 E-value=1.4e-28 Score=192.99 Aligned_cols=232 Identities=22% Similarity=0.367 Sum_probs=180.0
Q ss_pred CCcceeecceeeeecCCcEEEEEEecC--CCCCeeEEEECCeecCCC----eeEeceEE-----eeccceEEEEEEeecC
Q psy14540 2 HPQLIYKFIQQTLQPGPPVSLKCIATG--NPTPHISWKLDGYPLAGD----RFVMGQYM-----SLHGDVISHVNISSVR 70 (291)
Q Consensus 2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~--~~~~~v~W~~~~~~~~~~----~~~~~~~~-----~~~~~~~~~l~i~~~~ 70 (291)
+|+|..+|.......|++++|+|.+.+ ..+..+.|.++.+..... ........ .......+.|.+.|++
T Consensus 503 kpqI~~qPe~~~al~g~nirftC~a~sssasplsi~WR~dnevq~rv~ved~a~~~~q~r~~~~~e~~~~~~~L~L~nVt 582 (873)
T KOG4194|consen 503 KPQIVTQPETVSALIGENIRFTCNAYSSSASPLSIEWRKDNEVQPRVDVEDFATFLSQNRNGTFGEREEYTAILHLDNVT 582 (873)
T ss_pred CcceecCchHhhhhhccceEEEEEeccCCCCCceeEeeeccccCcccchhcchhhhhhhccCccchhhhhhheeeeeeee
Confidence 689999999999999999999999986 556789999987644311 11110000 1112234779999999
Q ss_pred CCCCeEEEEEEeCCCCc-eeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEe-c
Q psy14540 71 VEDSGIYQCTATNRVGS-QTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLP-I 148 (291)
Q Consensus 71 ~~d~G~y~C~~~~~~~~-~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~-~ 148 (291)
..|+|.|+|.++|..|. .+..++++|...|.+ ...|....+..|+...|.|.+ .|.|.|.+.|.++|.. .
T Consensus 583 ~td~grYQCVvtN~FGStysqk~KltV~~~PsF-------tktP~dltl~tg~mArl~CaA-tG~P~PeIawqkdggtdF 654 (873)
T KOG4194|consen 583 FTDEGRYQCVVTNHFGSTYSQKAKLTVNQAPSF-------TKTPEDLTLRTGQMARLECAA-TGHPRPEIAWQKDGGTDF 654 (873)
T ss_pred cccCceEEEEEecccCcchhheeEEEeeccCcc-------ccCcccceeecccceeeeeec-cCCCCcceeehhcCCCCC
Confidence 99999999999998886 677889999887744 355677889999999999999 7999999999998766 3
Q ss_pred cCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCcc
Q psy14540 149 LSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVAS 228 (291)
Q Consensus 149 ~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~ 228 (291)
+....... .+-..+..+.|.++..+|.|.|+|.|.|.+|.
T Consensus 655 PAA~eRRl----------------------------------------~Vmpedd~f~Itnvk~eD~GiYtC~A~n~AG~ 694 (873)
T KOG4194|consen 655 PAARERRL----------------------------------------HVMPEDDVFFITNVKIEDQGIYTCTAQNVAGQ 694 (873)
T ss_pred chhhhhee----------------------------------------eecCCCCEEEEecccccccceeEEeeeccccc
Confidence 32211110 01111335778889999999999999999999
Q ss_pred CCceeEEEEecCCCCCCCCccc-ccCCceEEEEEEeecCCCC-ceEEEEECCEEcc
Q psy14540 229 DNHSSNLRVNVPPHIGPFTFGE-LMEGVRTQVACVVQSGDLP-LSLQWYKNGLAIS 282 (291)
Q Consensus 229 ~~~~~~l~v~~~p~~~~~~~~~-~~~g~~v~l~C~~~~~~p~-~~v~W~~~~~~l~ 282 (291)
.++...|.|...|.+..+.... +..|+.+.|.|.+ .+.|+ |.+.|+|++++|.
T Consensus 695 isanAtL~V~e~p~f~~PL~~~~V~~get~vlqC~a-~~~~a~pr~~W~k~d~pil 749 (873)
T KOG4194|consen 695 ISANATLTVLETPSFSIPLEDQLVVVGETLVLQCLA-EGAPADPRLEWFKEDKPIL 749 (873)
T ss_pred eeeceEEEEecCCcccccccceEEEecceEEEEEec-CCCCCCccccccCCCCceE
Confidence 9999999999998888776666 9999999999999 66666 9999999998873
No 5
>KOG4221|consensus
Probab=99.96 E-value=9.5e-28 Score=200.82 Aligned_cols=230 Identities=29% Similarity=0.480 Sum_probs=180.4
Q ss_pred CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCC-eeEeceEEeeccceEEEEEEeecCCCCCeEEEEE
Q psy14540 2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGD-RFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCT 80 (291)
Q Consensus 2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~ 80 (291)
.+.|...+.+.++..|+++.|.|.+.+.+.+.+.|.++..++..+ +... ..+ ..|.|.+++..|.|.|+|.
T Consensus 140 ~~~f~~~~~~~t~~~g~ta~f~c~vn~e~~p~i~w~kn~~pl~~~~r~i~-----lps---G~L~I~~~qp~d~g~yrc~ 211 (1381)
T KOG4221|consen 140 LADFALQPESTTLLYGQTALFSCEVNAEPVPTIMWLKNDQPLPLDSRVIV-----LPS---GALEISGLQPSDTGEYRCV 211 (1381)
T ss_pred cCccccCccceeEecCCcEEEEEEEcCccCceeEEecccccccCCCcEEE-----cCC---CcEEecccccCCCceEEEE
Confidence 356777888899999999999999999888899999999877733 2222 111 3388999999999999999
Q ss_pred EeCCCCc-eeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEecc
Q psy14540 81 ATNRVGS-QTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSS 159 (291)
Q Consensus 81 ~~~~~~~-~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~ 159 (291)
+.+.... .+....|+|...+....... ....+....+.+|+.+.|.|.+ .+.|.|.|.|.+|+..+..+. ..+.
T Consensus 212 vt~g~~~r~S~~a~ltv~s~~~~~~~~~-fl~~p~~~~v~~g~~v~leCvv-s~~p~p~v~Wlrng~~i~~ds-~riv-- 286 (1381)
T KOG4221|consen 212 VTGGASQRTSNEAELTVLSDPGALNKLV-FLDEPSNAVVVEGDDVVLECVV-SGVPKPSVKWLRNGEKISVDS-YRIV-- 286 (1381)
T ss_pred EecCCcCCccceeEEEecCCccccccee-eecCCCccccccCCcEEEEEEe-cCCCCCceEEeeCCeeeeecc-eEEE--
Confidence 9865432 35566777774443322222 3456677888999999999999 899999999999998875543 1111
Q ss_pred CCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEec
Q psy14540 160 GEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNV 239 (291)
Q Consensus 160 ~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~ 239 (291)
+ .....|.|.+++.+|+|.|+|+|.|......+..+|.|..
T Consensus 287 --------l-------------------------------~g~~slliS~a~~~dSg~YtC~Atn~~D~idasaev~V~a 327 (1381)
T KOG4221|consen 287 --------L-------------------------------VGGSSLLISNATDDDSGKYTCRATNTNDSIDASAEVTVLA 327 (1381)
T ss_pred --------E-------------------------------ecccceEEeccccccCceEEEEecCCCcccccceEEEEEc
Confidence 0 1145688889999999999999999777777888899999
Q ss_pred CCCCCCCCccc-ccCCceEEEEEEeecCCCCceEEEEECCEEccCC
Q psy14540 240 PPHIGPFTFGE-LMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQP 284 (291)
Q Consensus 240 ~p~~~~~~~~~-~~~g~~v~l~C~~~~~~p~~~v~W~~~~~~l~~~ 284 (291)
+|.|...+... +.++..+.|.|.+ .|.|.+.+.|+|||..+-..
T Consensus 328 ~P~~~~~p~~l~A~e~~die~ec~~-~g~p~p~v~w~kNgd~~ips 372 (1381)
T KOG4221|consen 328 PPGFTKAPTTLVAHESMDIEFECPV-SGKPIPTVRWYKNGDRIIPS 372 (1381)
T ss_pred CCCCCCCCcceeeeeccceeEeCCC-CCCCcceEEEEecCcccCcc
Confidence 99999888877 8899999999999 88899999999998876433
No 6
>KOG4221|consensus
Probab=99.95 E-value=7.2e-26 Score=189.76 Aligned_cols=254 Identities=25% Similarity=0.373 Sum_probs=192.8
Q ss_pred ceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCC
Q psy14540 5 LIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNR 84 (291)
Q Consensus 5 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~ 84 (291)
|...|...++.+|+++.|.|.+.+.|.+.|.|.+|+..+..+.+.+. -.+...|.|.+++..|+|.|+|.+.+.
T Consensus 240 fl~~p~~~~v~~g~~v~leCvvs~~p~p~v~Wlrng~~i~~ds~riv------l~g~~slliS~a~~~dSg~YtC~Atn~ 313 (1381)
T KOG4221|consen 240 FLDEPSNAVVVEGDDVVLECVVSGVPKPSVKWLRNGEKISVDSYRIV------LVGGSSLLISNATDDDSGKYTCRATNT 313 (1381)
T ss_pred eecCCCccccccCCcEEEEEEecCCCCCceEEeeCCeeeeecceEEE------EecccceEEeccccccCceEEEEecCC
Confidence 56778888999999999999999999999999999998884333221 122355899999999999999999987
Q ss_pred CCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceE
Q psy14540 85 VGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTS 164 (291)
Q Consensus 85 ~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~ 164 (291)
.........++|+.+|..+ ..+......++..+.|.|.+ .|.|.+.+.|+|||..+.....+.+....
T Consensus 314 ~D~idasaev~V~a~P~~~-------~~p~~l~A~e~~die~ec~~-~g~p~p~v~w~kNgd~~ipsdy~ki~~~~---- 381 (1381)
T KOG4221|consen 314 NDSIDASAEVTVLAPPGFT-------KAPTTLVAHESMDIEFECPV-SGKPIPTVRWYKNGDRIIPSDYFKIVGGG---- 381 (1381)
T ss_pred CcccccceEEEEEcCCCCC-------CCCcceeeeeccceeEeCCC-CCCCcceEEEEecCcccCcccceEecCCC----
Confidence 7777788889999887544 44555677789999999999 78899999999999988776666655332
Q ss_pred EEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEec--------------------------------------------
Q psy14540 165 SLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNE-------------------------------------------- 200 (291)
Q Consensus 165 ~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~-------------------------------------------- 200 (291)
.+.|..+...|.|.|.|.++|..|.......+.+..
T Consensus 382 ~lrIlgi~~sdeg~yQcvaen~~G~a~a~a~l~vv~~p~~~~s~~~~sap~~lv~~~~~srfi~~tw~~p~~~~g~i~~~ 461 (1381)
T KOG4221|consen 382 NLRILGIVKSDEGFYQCVAENDAGSAQAAAQLEVVPQPASASSDLLPSAPRDLVANLVSSRFIQLTWRPPAQISGNISTY 461 (1381)
T ss_pred CcEEEEEecccchhhhhhhccCcccccchhhheeccCCcccccCccccCCcceecccccceeEEEeecCccccCCCcceE
Confidence 288888999999999999999999877666553100
Q ss_pred ------------------cceEEEEeeeecCCCeeEEE--EeeeCCccCCceeEEEEecCCCCCCCCcccccCCceEEEE
Q psy14540 201 ------------------YTSSLSIATLSTGHSGNYTC--VASNTVASDNHSSNLRVNVPPHIGPFTFGELMEGVRTQVA 260 (291)
Q Consensus 201 ------------------~~~~l~i~~~~~~~~g~y~C--~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~g~~v~l~ 260 (291)
... +.+........+.|.| .|.|..|....+..|.|..+|. .+.. ...+..--++
T Consensus 462 ~v~~~~~~~~rer~~~tss~g-~~~tv~nl~p~t~Y~~rv~A~n~~g~g~sS~pLkV~t~pE---gp~~-~~a~ats~~t 536 (1381)
T KOG4221|consen 462 TVFYKVEGDVRERLQNTSSPG-IQVTVQNLSPLTMYFFRVRAKNEAGSGESSAPLKVTTQPE---GPVQ-LQAYATSPTT 536 (1381)
T ss_pred EEEEecCCchhhhheeccCCc-eEEEeeecccceeEEEEEeccCcccCCccCCceEEecCCC---CCcc-ccccccCcce
Confidence 011 4444455556666655 5567778877888888888777 2222 5556666788
Q ss_pred EEeecCCCCc----eEEEEECCEEcc
Q psy14540 261 CVVQSGDLPL----SLQWYKNGLAIS 282 (291)
Q Consensus 261 C~~~~~~p~~----~v~W~~~~~~l~ 282 (291)
|.+ .+.|++ .|+|||......
T Consensus 537 i~v-~WepP~~~n~~I~~yk~~ys~~ 561 (1381)
T KOG4221|consen 537 ILV-TWEPPPFGNGPITGYKLFYSED 561 (1381)
T ss_pred EEE-EecCCCCCCCCceEEEEEEEcC
Confidence 999 777776 899998655443
No 7
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.95 E-value=2.2e-25 Score=172.59 Aligned_cols=212 Identities=21% Similarity=0.316 Sum_probs=138.4
Q ss_pred eeeecCCcEEEEEEe-----cCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCC
Q psy14540 12 QTLQPGPPVSLKCIA-----TGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVG 86 (291)
Q Consensus 12 ~~v~~g~~v~l~C~~-----~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~ 86 (291)
..+.+|+.+.|.|.+ .+.|.+.+.|+|+|.... +... ...+ ..|.|.+++.+|+|.|+|.+.|..+
T Consensus 36 ~~~~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~~~--~~~~----~~~g---~~l~i~~~~~~DsG~Y~C~a~N~~g 106 (326)
T PHA02785 36 FMELENEPVILPCPQINTLSSGYNILDILWEKRGADND--RIIP----IDNG---SNMLILNPTQSDSGIYICITKNETY 106 (326)
T ss_pred hhhhcCCCEEEECCCccccccCCCCceEEEEECCCccc--eEEE----ccCC---ceEEEcccCcccCeEEEEEEECCCc
Confidence 346789999999996 567888999999875322 1110 0111 2477999999999999999999888
Q ss_pred ceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEe----eCCCCCceeEEeECCEeccCCCceEEeccCCc
Q psy14540 87 SQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLV----TKGDPPLTISWLKNGLPILSDAEITIRSSGEY 162 (291)
Q Consensus 87 ~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~----~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~ 162 (291)
....++.|+|....... .. .......+.+|..+.|.|.. ..+.|.+.+.|++++. + ...+....
T Consensus 107 ~~~~s~~L~V~~~~~~~--~~---~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~~-~-~~~r~~~~----- 174 (326)
T PHA02785 107 CDMMSLNLTIVSVSESN--ID---LISYPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHRR-L-RNKRLKQR----- 174 (326)
T ss_pred ceEEEEEEEEEecCCCc--cc---eeeccceecccCcEEEECCChhhcccCCCCceEEEccCCc-c-CCcceEec-----
Confidence 77788888887643210 00 11223456689999999972 1357889999987542 1 11111110
Q ss_pred eEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCC----ceeEEEEe
Q psy14540 163 TSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDN----HSSNLRVN 238 (291)
Q Consensus 163 ~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~----~~~~l~v~ 238 (291)
..+.|.|.++..+|+|.|+|.+.|..+... ..+.|.|.
T Consensus 175 --------------------------------------~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~ 216 (326)
T PHA02785 175 --------------------------------------TPGIITIEDVRKNDAGYYTCVLKYIYGDKTYNVTRIVKLEVR 216 (326)
T ss_pred --------------------------------------CCCeEEEeecChhhCeEEEEEEEeccCCEEEeEEEEEEEEEe
Confidence 023466666777777777777776654332 23344443
Q ss_pred ---cCCCCCCCCcccccCCceEEEEEEeecCCCC---ceEEEEECCEEccC
Q psy14540 239 ---VPPHIGPFTFGELMEGVRTQVACVVQSGDLP---LSLQWYKNGLAISQ 283 (291)
Q Consensus 239 ---~~p~~~~~~~~~~~~g~~v~l~C~~~~~~p~---~~v~W~~~~~~l~~ 283 (291)
.+|.+..+....+..|+.++|.|.+ .|.|+ +.|.|++||+.|++
T Consensus 217 ~~~~pp~~~~p~~~~~~~G~~v~L~C~a-~g~P~~~~~~v~W~kng~~i~~ 266 (326)
T PHA02785 217 DRIIPPTMQLPEGVVTSIGSNLTIACRV-SLRPPTTDADVFWISNGMYYEE 266 (326)
T ss_pred ccCCCceecCCCcEEecCCCcEEEEEEE-ECCCCCCCceEEEEECCEECCC
Confidence 2444433333337789999999999 66665 58999999998854
No 8
>KOG4222|consensus
Probab=99.92 E-value=1.6e-24 Score=180.82 Aligned_cols=268 Identities=28% Similarity=0.474 Sum_probs=200.5
Q ss_pred cceeecceeeeecCCcEEEEEEec-CCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEe
Q psy14540 4 QLIYKFIQQTLQPGPPVSLKCIAT-GNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTAT 82 (291)
Q Consensus 4 ~~~~~~~~~~v~~g~~v~l~C~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~ 82 (291)
.|-+.|.+..+..|+.+.|.|.-. +.|.+.+.|.|+|+.+....... ...... ..|.|.+++..|+|.|.|.+.
T Consensus 133 dfrv~prd~~~a~ge~avlEcgpP~ghpeptvSw~Kdg~pl~~~~~~~---~~lisg--G~LlIsnvrksD~GtY~CVat 207 (1281)
T KOG4222|consen 133 DFRVSPRDVQAAVGEEAVLECGPPRGHPEPTVSWVKDGKPLDHYDVPI---IALISG--GNLLISNVRKSDEGTYACVAT 207 (1281)
T ss_pred hcccCcccccccccceeEEeccCCCCCCCCcceeecCCCcccccccee---EEEecC--CcEEEeccccCCCceeeeeec
Confidence 455677788889999999999865 47889999999999877111111 111111 238899999999999999999
Q ss_pred CCCCc-eeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCC
Q psy14540 83 NRVGS-QTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGE 161 (291)
Q Consensus 83 ~~~~~-~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~ 161 (291)
|..|. .+...++.|++.|.+- ..+....+..|..+.+.|.+ .|.|.+.+.|.+++..++... +.+..+
T Consensus 208 NmvG~ReS~~A~lsv~e~P~f~-------~rp~~~~v~~g~~~~f~c~v-~GdP~P~Vrwkk~~~~~P~~r-y~i~~d-- 276 (1281)
T KOG4222|consen 208 NMVGERESIPARLSVQEKPWFW-------KRPKDLAVLVGAAAEFDCRV-GGDPQPTVRWKKDDPSLPRSR-YSILDD-- 276 (1281)
T ss_pred ccccccccccceeeeccCCccc-------cccccceeeccccccccccc-CCCCCCceeeeccCCCCCccc-eeeeec--
Confidence 98886 4566788999887543 44456778889999999999 899999999999887775443 332221
Q ss_pred ceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEecc----------------------------------------
Q psy14540 162 YTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEY---------------------------------------- 201 (291)
Q Consensus 162 ~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~---------------------------------------- 201 (291)
..+|.+..+...|.|.|.|.++|..|.......+.+...
T Consensus 277 -~qtl~i~r~tp~deg~y~C~a~n~vG~l~asa~ltV~apP~f~kkp~dq~v~lg~~vt~pc~~~gnP~PavfW~keg~q 355 (1281)
T KOG4222|consen 277 -TQTLRIDRVTPTDEGTYVCPAENLVGGLEASATLTVQAPPSFGKKPRDQKVALGGTVTFPCETLGNPPPAVFWLKEGSQ 355 (1281)
T ss_pred -cccccccccCCCcccceeeeccccccccccccceEEecCcccccccCccccccCceEEeeeecCCCCCcceEEeccCcc
Confidence 356889999999999999999999998776665551111
Q ss_pred -------------------ceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEe------cC-CCCCCCCccc-ccCC
Q psy14540 202 -------------------TSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVN------VP-PHIGPFTFGE-LMEG 254 (291)
Q Consensus 202 -------------------~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~------~~-p~~~~~~~~~-~~~g 254 (291)
...|.|.++...|.|.|.|...+..+.......+.+. .| |.|...+... ..++
T Consensus 356 ~llf~~~p~~~~~r~svs~~g~L~it~v~~~d~g~Yvcq~~~~~~ss~~~a~~~qt~~~~~~rPpp~i~~g~~nQtl~v~ 435 (1281)
T KOG4222|consen 356 DLLFSASPPSSNGRGSVSPTGTLTITNVRQSDEGYYVCQTQTSAGSSLTKAYLEQTDVLTDSRPPPIIEQGPANQTLPVG 435 (1281)
T ss_pred eecccCCCCCcCccceecCCCCcccccccccccceEeecccccccccccceeEEEEeeeccCCCCceeeecccccccccC
Confidence 5689999999999999999988777554433333322 23 3343333333 7779
Q ss_pred ceEEEEEEeecCCCCceEEEEECCEEccCCeeeEe
Q psy14540 255 VRTQVACVVQSGDLPLSLQWYKNGLAISQPDISIT 289 (291)
Q Consensus 255 ~~v~l~C~~~~~~p~~~v~W~~~~~~l~~~~~~~~ 289 (291)
..+.|.|.+ .+.|.+.+.|+++|-.+...+.+++
T Consensus 436 s~a~l~c~a-tg~P~p~i~wl~dg~~v~~~d~~~s 469 (1281)
T KOG4222|consen 436 STASLPCSA-TGAPTPNISWLKDGCNVMNPDSRIS 469 (1281)
T ss_pred cccccChhh-hCCCCCCchhhhcccccccCCcccc
Confidence 999999999 9999999999999988876665443
No 9
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.90 E-value=3.6e-22 Score=145.41 Aligned_cols=163 Identities=23% Similarity=0.365 Sum_probs=112.4
Q ss_pred cceeeeecCCcEEEEEEecCC-----------CCCeeEEEECCeecC----CCeeEeceEE-eeccceEEEEEEeecCCC
Q psy14540 9 FIQQTLQPGPPVSLKCIATGN-----------PTPHISWKLDGYPLA----GDRFVMGQYM-SLHGDVISHVNISSVRVE 72 (291)
Q Consensus 9 ~~~~~v~~g~~v~l~C~~~~~-----------~~~~v~W~~~~~~~~----~~~~~~~~~~-~~~~~~~~~l~i~~~~~~ 72 (291)
..+..+.+|+++.|.|.+.+. ...++.|+|++...- +.+....... ...+.....|.|.+++.+
T Consensus 29 ~~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~ 108 (227)
T PHA02826 29 LTPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINI 108 (227)
T ss_pred cceEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCChH
Confidence 345678999999999997653 345899999875421 1110000000 000111246999999999
Q ss_pred CCeEEEEEEeCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCC----CCCceeEEeECCEec
Q psy14540 73 DSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKG----DPPLTISWLKNGLPI 148 (291)
Q Consensus 73 d~G~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~----~p~~~~~W~~~~~~~ 148 (291)
|+|.|+|.+.+..+.....+.|.|...+ ....+.+|+.+.|.|.+..+ .|.|+++|+|++.++
T Consensus 109 DsG~Y~C~a~N~~~~~~~~i~L~V~~~~-------------~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l 175 (227)
T PHA02826 109 DEGIYICTISSGNICEESTIRLTFDSGT-------------INYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIV 175 (227)
T ss_pred HCEEEEEEEEECCcceEEEEEEEEecCC-------------ccceEecCCCEEEEeeCCCCccccCCCceEEEEECCEEC
Confidence 9999999999988777777777774321 12456789999999997443 467899999999998
Q ss_pred cCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecC
Q psy14540 149 LSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTV 187 (291)
Q Consensus 149 ~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 187 (291)
....+...... ...|.|.++..+|+|.|+|.+....
T Consensus 176 ~~~~r~~~~~~---~~~L~I~~V~~~DsG~YtC~a~~~~ 211 (227)
T PHA02826 176 LYTDRIQLRNN---NSTLVIKSATHDDSGIYTCNLRFNK 211 (227)
T ss_pred CCCCCEEEeCC---CCEEEECcCCHHhCEEEEEEEEEeE
Confidence 76655443321 3468888888888888888877654
No 10
>KOG4194|consensus
Probab=99.89 E-value=9.3e-22 Score=155.05 Aligned_cols=176 Identities=30% Similarity=0.495 Sum_probs=131.4
Q ss_pred CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCee-cCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEE
Q psy14540 2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYP-LAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCT 80 (291)
Q Consensus 2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~ 80 (291)
.|.|+..|.+.++..|+...|.|.++|.|.|+|.|.|+|.. .+..+.. .-+....++ .+.|.|++.+|+|.|+|.
T Consensus 612 ~PsFtktP~dltl~tg~mArl~CaAtG~P~PeIawqkdggtdFPAA~eR-Rl~Vmpedd---~f~Itnvk~eD~GiYtC~ 687 (873)
T KOG4194|consen 612 APSFTKTPEDLTLRTGQMARLECAATGHPRPEIAWQKDGGTDFPAARER-RLHVMPEDD---VFFITNVKIEDQGIYTCT 687 (873)
T ss_pred cCccccCcccceeecccceeeeeeccCCCCcceeehhcCCCCCchhhhh-eeeecCCCC---EEEEecccccccceeEEe
Confidence 69999999999999999999999999999999999997764 4311110 011111222 256999999999999999
Q ss_pred EeCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCC-ceeEEeECCEeccCCCceEEecc
Q psy14540 81 ATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPP-LTISWLKNGLPILSDAEITIRSS 159 (291)
Q Consensus 81 ~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~-~~~~W~~~~~~~~~~~~~~~~~~ 159 (291)
+.+..|..+....+.|.+.|.+. .+.+...+..|+.+.|.|.+ .+.|+ |.+.|+|+++++.-..+....
T Consensus 688 A~n~AG~isanAtL~V~e~p~f~-------~PL~~~~V~~get~vlqC~a-~~~~a~pr~~W~k~d~pil~t~rh~f~-- 757 (873)
T KOG4194|consen 688 AQNVAGQISANATLTVLETPSFS-------IPLEDQLVVVGETLVLQCLA-EGAPADPRLEWFKEDKPILITERHTFP-- 757 (873)
T ss_pred eeccccceeeceEEEEecCCccc-------ccccceEEEecceEEEEEec-CCCCCCccccccCCCCceEEeecccCC--
Confidence 99999999999999999987443 22345678899999999999 56665 999999999887655443322
Q ss_pred CCceEEEEEeeCCCCCceeEEEEEEecCCCCCC
Q psy14540 160 GEYTSSLSIATLSTGHSGNYTCVASNTVASDNH 192 (291)
Q Consensus 160 ~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~ 192 (291)
++..-+.+......|.|.|+|.+.+..+....
T Consensus 758 -d~dQllvv~~~~~~daG~yTcem~~~~~~~~~ 789 (873)
T KOG4194|consen 758 -DGDQLLVVKENLVEDAGIYTCEMSNTLGTERI 789 (873)
T ss_pred -CCCeEEEEEehhhhhcceEEEEEEeeccceee
Confidence 23445666666677777777766666554433
No 11
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.82 E-value=2.3e-18 Score=133.65 Aligned_cols=128 Identities=21% Similarity=0.341 Sum_probs=86.9
Q ss_pred ecceeeeecCCcEEEEEEe-----cCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEe
Q psy14540 8 KFIQQTLQPGPPVSLKCIA-----TGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTAT 82 (291)
Q Consensus 8 ~~~~~~v~~g~~v~l~C~~-----~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~ 82 (291)
.+.+..+.+|..+.|.|.. .+.+.+.++|+++.. +...++.. . ....|.|.+++.+|+|.|+|.+.
T Consensus 127 ~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~~-~~~~r~~~-----~---~~~~L~i~~v~~~d~G~Y~C~~~ 197 (326)
T PHA02785 127 ISYPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHRR-LRNKRLKQ-----R---TPGIITIEDVRKNDAGYYTCVLK 197 (326)
T ss_pred eeccceecccCcEEEECCChhhcccCCCCceEEEccCCc-cCCcceEe-----c---CCCeEEEeecChhhCeEEEEEEE
Confidence 3444567899999999972 346788999988642 33222211 1 11359999999999999999999
Q ss_pred CCCCcee----eeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCC---ceeEEeECCEeccC
Q psy14540 83 NRVGSQT----HSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPP---LTISWLKNGLPILS 150 (291)
Q Consensus 83 ~~~~~~~----~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~---~~~~W~~~~~~~~~ 150 (291)
+..+... ..+.|.|.....+| . ...+....+..|+.++|.|.+ .+.|. +.+.|++||..+..
T Consensus 198 n~~g~~~~~~t~~v~l~V~~~~~pp----~-~~~p~~~~~~~G~~v~L~C~a-~g~P~~~~~~v~W~kng~~i~~ 266 (326)
T PHA02785 198 YIYGDKTYNVTRIVKLEVRDRIIPP----T-MQLPEGVVTSIGSNLTIACRV-SLRPPTTDADVFWISNGMYYEE 266 (326)
T ss_pred eccCCEEEeEEEEEEEEEeccCCCc----e-ecCCCcEEecCCCcEEEEEEE-ECCCCCCCceEEEEECCEECCC
Confidence 8766543 23345554322111 1 122355677789999999999 46554 48999999998754
No 12
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.82 E-value=6.4e-19 Score=111.85 Aligned_cols=96 Identities=24% Similarity=0.404 Sum_probs=82.9
Q ss_pred CcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecC-CCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEE
Q psy14540 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLA-GDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTA 81 (291)
Q Consensus 3 p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~ 81 (291)
|.|+..|....+..|+.+.|.|.+.|.|.+.+.|+|++..+. ..++.. ......+.|.|.+++..|+|.|+|.+
T Consensus 1 p~~~~~p~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~~~~~~-----~~~~~~s~L~I~~~~~~D~G~Ytc~a 75 (98)
T cd05762 1 PQIIQFPEDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEGEGIKI-----ENTENSSKLTITEGQQEHCGCYTLEV 75 (98)
T ss_pred CceEECCcCEEEECCCEEEEEEEEcccCCCceEEEECCEEecCCCcEEE-----EecCCeeEEEECCCChhhCEEEEEEE
Confidence 788999999999999999999999999999999999999887 333322 22234477999999999999999999
Q ss_pred eCCCCceeeeeeEEEEcCCCCC
Q psy14540 82 TNRVGSQTHSADMRVYDAPGQP 103 (291)
Q Consensus 82 ~~~~~~~~~~~~l~v~~~~~~~ 103 (291)
.|..|.....+.|.|.+.|.+|
T Consensus 76 ~N~~G~~~~~~~l~V~~~P~pP 97 (98)
T cd05762 76 ENKLGSRQAQVNLTVVDKPDPP 97 (98)
T ss_pred EcCCCceeEEEEEEEecCCCCC
Confidence 9999999999999999988654
No 13
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.75 E-value=2.8e-17 Score=102.35 Aligned_cols=87 Identities=31% Similarity=0.529 Sum_probs=73.4
Q ss_pred CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEE
Q psy14540 2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTA 81 (291)
Q Consensus 2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~ 81 (291)
||.|...+.+..+.+|+.+.|.|.+.|.|.|.++|+|++..+.... .. ... ...|.|.+++.+|+|.|+|.+
T Consensus 1 ~p~i~~~~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~~-~~----~~~---~~~L~I~~v~~~D~G~Y~C~A 72 (88)
T cd05851 1 PADINVKFKDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPATA-EI----SMS---GAVLKIFNIQPEDEGTYECEA 72 (88)
T ss_pred CCceEEccccEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCCCC-EE----ecC---CCEEEECcCChhhCEEEEEEE
Confidence 7999999999999999999999999999999999999987765321 11 111 135899999999999999999
Q ss_pred eCCCCceeeeeeEEE
Q psy14540 82 TNRVGSQTHSADMRV 96 (291)
Q Consensus 82 ~~~~~~~~~~~~l~v 96 (291)
.|..|.....+.|.|
T Consensus 73 ~N~~G~~~~~~~l~V 87 (88)
T cd05851 73 ENIKGKDKHQARVYV 87 (88)
T ss_pred EcCCCceEEEEEEEE
Confidence 999999888887776
No 14
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.72 E-value=1.9e-16 Score=99.86 Aligned_cols=88 Identities=23% Similarity=0.425 Sum_probs=73.5
Q ss_pred CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCC-CeeEeceEEeeccceEEEEEEeecCCCCCeEEEEE
Q psy14540 2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAG-DRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCT 80 (291)
Q Consensus 2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~ 80 (291)
||.|+..|....+.+|+.+.|.|.+.+.|.+.+.|++++..+.. .++.. ......++|.|.+++.+|+|.|+|.
T Consensus 3 ~~~~~~~p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~-----~~~~~~~~L~i~~~~~~D~G~Y~C~ 77 (92)
T cd05747 3 PATILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQI-----TSTEYKSTFEISKVQMSDEGNYTVV 77 (92)
T ss_pred CCcccccCccEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCCCCcEEE-----EEcCCeeEEEECCCCcccCEeEEEE
Confidence 78999999999999999999999999999999999999988763 33222 1223346799999999999999999
Q ss_pred EeCCCCceeeeeeE
Q psy14540 81 ATNRVGSQTHSADM 94 (291)
Q Consensus 81 ~~~~~~~~~~~~~l 94 (291)
+.|..|.....+.|
T Consensus 78 a~N~~G~~~~~~~l 91 (92)
T cd05747 78 VENSEGKQEAQFTL 91 (92)
T ss_pred EEcCCCCEeEEEEe
Confidence 99999987776654
No 15
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.69 E-value=6.3e-16 Score=98.48 Aligned_cols=95 Identities=24% Similarity=0.521 Sum_probs=72.4
Q ss_pred CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeE-eceEEeeccceEEEEEEeecCCCCCeEEEEE
Q psy14540 2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFV-MGQYMSLHGDVISHVNISSVRVEDSGIYQCT 80 (291)
Q Consensus 2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~ 80 (291)
+|.|...+....+..|+.++|.|.+.+.|.|.++|++++..+...... ............+.|.|.+++.+|+|.|+|.
T Consensus 2 ~p~i~~~~~~~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C~ 81 (97)
T cd05869 2 KPKITYVENQTAMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLCT 81 (97)
T ss_pred CceEEEccCceEEEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEEE
Confidence 588887777766667899999999999999999999988766522111 1111112223346799999999999999999
Q ss_pred EeCCCCceeeeeeEEE
Q psy14540 81 ATNRVGSQTHSADMRV 96 (291)
Q Consensus 81 ~~~~~~~~~~~~~l~v 96 (291)
+.|..|.....+.|.|
T Consensus 82 A~N~~G~~~~~~~l~v 97 (97)
T cd05869 82 ASNTIGQDSQSMYLEV 97 (97)
T ss_pred EecCCCCeeEEEEEEC
Confidence 9999999888877764
No 16
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.69 E-value=2.3e-16 Score=99.53 Aligned_cols=89 Identities=34% Similarity=0.638 Sum_probs=76.0
Q ss_pred CcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCC-CeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEE
Q psy14540 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAG-DRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTA 81 (291)
Q Consensus 3 p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~ 81 (291)
|.|...+.+..+.+|+++.|.|.+.+.|.+.+.|++++..+.. .++... .....++|.|.+++.+|+|.|+|.+
T Consensus 1 P~~~~~~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~~~~~~~-----~~~~~~~L~I~~v~~~D~G~Y~C~~ 75 (90)
T PF07679_consen 1 PVFTKKPKDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTSSQRYQIE-----SDGGSSSLTIKNVTREDAGTYTCVA 75 (90)
T ss_dssp EEEEEESSEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEESSSSEEEE-----EETTEEEEEESSESGGGSEEEEEEE
T ss_pred CEEEEecCCEEEeCCCEEEEEEEEEeCCCCcccccccccceeeeeeeeee-----cccceeEEccCCCChhhCEEEEEEE
Confidence 7899999999999999999999999988999999999998873 333332 2226688999999999999999999
Q ss_pred eCCCCceeeeeeEEE
Q psy14540 82 TNRVGSQTHSADMRV 96 (291)
Q Consensus 82 ~~~~~~~~~~~~l~v 96 (291)
.+..|.....+.|.|
T Consensus 76 ~n~~g~~~~~~~l~V 90 (90)
T PF07679_consen 76 SNSSGEATASVNLTV 90 (90)
T ss_dssp EETTEEEEEEEEEEE
T ss_pred EECCCEEEEEEEEEC
Confidence 999888888877765
No 17
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.69 E-value=9.4e-16 Score=97.38 Aligned_cols=88 Identities=18% Similarity=0.291 Sum_probs=68.9
Q ss_pred ceeeeecCCcEEEEEEecC-CCCCeeEEEECCeecCCCeeEeceEEe-eccceEEEEEEeecCCCCCeEEEEEEeCCCCc
Q psy14540 10 IQQTLQPGPPVSLKCIATG-NPTPHISWKLDGYPLAGDRFVMGQYMS-LHGDVISHVNISSVRVEDSGIYQCTATNRVGS 87 (291)
Q Consensus 10 ~~~~v~~g~~v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~ 87 (291)
..+.+.+|+++.|.|.+.+ .|.|.+.|+|+|..+............ ......++|.|.+++.+|+|.|+|.+.|..|.
T Consensus 11 ~~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~ 90 (101)
T cd04975 11 TTIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDAS 90 (101)
T ss_pred ceEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCcc
Confidence 3568999999999999999 899999999999988733221111110 01123477999999999999999999999999
Q ss_pred eeeeeeEEEE
Q psy14540 88 QTHSADMRVY 97 (291)
Q Consensus 88 ~~~~~~l~v~ 97 (291)
.+..+.|.|.
T Consensus 91 ~~~t~~L~V~ 100 (101)
T cd04975 91 KSLTFELYVN 100 (101)
T ss_pred EEEEEEEEEE
Confidence 8888888775
No 18
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.69 E-value=1.2e-15 Score=95.01 Aligned_cols=85 Identities=24% Similarity=0.486 Sum_probs=68.3
Q ss_pred CCcEEEEEEecCCCCCeeEEEECCeecCCC--eeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCceeeeeeE
Q psy14540 17 GPPVSLKCIATGNPTPHISWKLDGYPLAGD--RFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADM 94 (291)
Q Consensus 17 g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~l 94 (291)
|+.++|.|.+.+.|.+.+.|++++..+... ++..... .......+.|.|.+++.+|+|.|+|.+.|..|.....+.|
T Consensus 1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~-~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L 79 (88)
T cd05735 1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTK-EVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQL 79 (88)
T ss_pred CCeEEEEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEe-cCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEEE
Confidence 789999999999999999999999887632 3322111 1122345789999999999999999999999999999999
Q ss_pred EEEcCCCC
Q psy14540 95 RVYDAPGQ 102 (291)
Q Consensus 95 ~v~~~~~~ 102 (291)
.|...|..
T Consensus 80 ~V~~~P~~ 87 (88)
T cd05735 80 TVQEPPDP 87 (88)
T ss_pred EEeCCCCC
Confidence 99987644
No 19
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.68 E-value=8.7e-16 Score=97.99 Aligned_cols=94 Identities=26% Similarity=0.519 Sum_probs=71.6
Q ss_pred CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCC-eeEeceEEeeccceEEEEEEeecCCCCCeEEEEE
Q psy14540 2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGD-RFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCT 80 (291)
Q Consensus 2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~ 80 (291)
+|.|. .+.+..+.+|+++.|.|.+.+.|.+.+.|++++..+... ...............+.|.|.+++.+|+|.|+|.
T Consensus 2 ~P~i~-~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 80 (96)
T cd05732 2 QPKIT-YLENQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCE 80 (96)
T ss_pred Cccce-ecCceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEEE
Confidence 68875 466788999999999999999999999999988665422 1111111122233457899999999999999999
Q ss_pred EeCCCCceeeeeeEEE
Q psy14540 81 ATNRVGSQTHSADMRV 96 (291)
Q Consensus 81 ~~~~~~~~~~~~~l~v 96 (291)
+.|..|....++.|.|
T Consensus 81 a~N~~G~~~~s~~l~v 96 (96)
T cd05732 81 ASNRIGGDQQSMYLEV 96 (96)
T ss_pred EEeCCCCcEEEEEEeC
Confidence 9999998887776654
No 20
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.67 E-value=1.8e-15 Score=96.60 Aligned_cols=94 Identities=28% Similarity=0.530 Sum_probs=68.2
Q ss_pred CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEEC--CeecCCC-eeEeceEEeeccceEEEEEEeecCCCCCeEEE
Q psy14540 2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLD--GYPLAGD-RFVMGQYMSLHGDVISHVNISSVRVEDSGIYQ 78 (291)
Q Consensus 2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~--~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~ 78 (291)
+|.|. .+.+.++.+|++++|.|.+.+.|.+.+.|+++ +..+... .....+...........|.|.+++.+|+|.|+
T Consensus 2 ~p~i~-~~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~Y~ 80 (98)
T cd05870 2 QPHII-QLKNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSGRYD 80 (98)
T ss_pred CCEEE-eeccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCEEEE
Confidence 57765 47788999999999999999999999999994 3333211 00000111111223467999999999999999
Q ss_pred EEEeCCCCceeeeeeEEE
Q psy14540 79 CTATNRVGSQTHSADMRV 96 (291)
Q Consensus 79 C~~~~~~~~~~~~~~l~v 96 (291)
|.+.|..|.....+.|.|
T Consensus 81 C~A~N~~G~~~~~~~l~~ 98 (98)
T cd05870 81 CEAASRIGGHQKSMYLDI 98 (98)
T ss_pred EEEeccCCcceeEEEEeC
Confidence 999999998887777653
No 21
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.67 E-value=2.4e-15 Score=93.08 Aligned_cols=81 Identities=25% Similarity=0.395 Sum_probs=66.7
Q ss_pred eeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCC--eeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCce
Q psy14540 11 QQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGD--RFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQ 88 (291)
Q Consensus 11 ~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~ 88 (291)
.+.+.+|+.+.|.|.+.|.|.|.+.|++++..+... ++.. ......+.|.|.+++.+|+|.|+|.+.|..|..
T Consensus 4 ~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~-----~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~ 78 (86)
T cd05894 4 TIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRV-----ESYKDLSSFVIEGAEREDEGVYTITVTNPVGED 78 (86)
T ss_pred EEEEEcCCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEE-----EEcCCeEEEEECCCccCcCEEEEEEEEeCCCcE
Confidence 467899999999999999999999999999988632 3322 222335779999999999999999999999998
Q ss_pred eeeeeEEE
Q psy14540 89 THSADMRV 96 (291)
Q Consensus 89 ~~~~~l~v 96 (291)
...+.|.|
T Consensus 79 ~~~~~l~V 86 (86)
T cd05894 79 HASLFVKV 86 (86)
T ss_pred EEEEEEEC
Confidence 88777654
No 22
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.66 E-value=2.2e-15 Score=94.95 Aligned_cols=84 Identities=27% Similarity=0.480 Sum_probs=66.8
Q ss_pred cceeeeecCCcEEEEEEecCCCCCeeEEEECCeecC-CCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCc
Q psy14540 9 FIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLA-GDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGS 87 (291)
Q Consensus 9 ~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~ 87 (291)
|...++.+|+++.|.|.+.+.|.|.+.|++++..+. ..++... ......++|.|.+++.+|+|.|+|.+.|..|.
T Consensus 8 p~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~~~~~~~----~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~ 83 (92)
T cd05737 8 PDVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVK----VEQGKYASLTIKGVSSEDSGKYGIVVKNKYGG 83 (92)
T ss_pred CceEEEeCCCcEEEEEEEEecCCCeEEEEECCEECccCCCEEEE----EcCCCEEEEEEccCChhhCEEEEEEEEECCCc
Confidence 455789999999999999999999999999999886 3332221 11123467999999999999999999999998
Q ss_pred eeeeeeEEE
Q psy14540 88 QTHSADMRV 96 (291)
Q Consensus 88 ~~~~~~l~v 96 (291)
....+.+.|
T Consensus 84 ~~~~~~v~v 92 (92)
T cd05737 84 ETVDVTVSV 92 (92)
T ss_pred ceEEEEEeC
Confidence 877776653
No 23
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.66 E-value=2.6e-15 Score=95.31 Aligned_cols=89 Identities=29% Similarity=0.453 Sum_probs=66.5
Q ss_pred CCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCC
Q psy14540 112 NSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDN 191 (291)
Q Consensus 112 ~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~ 191 (291)
.+....+..|+.+.|.|.+ .|.|.+.+.|++++..+....+..+....
T Consensus 6 ~p~~~~v~~G~~v~l~C~~-~G~p~p~v~W~kdg~~l~~~~~~~~~~~~------------------------------- 53 (98)
T cd05762 6 FPEDMKVRAGESVELFCKV-TGTQPITCTWMKFRKQIQEGEGIKIENTE------------------------------- 53 (98)
T ss_pred CCcCEEEECCCEEEEEEEE-cccCCCceEEEECCEEecCCCcEEEEecC-------------------------------
Confidence 3455788999999999999 79999999999999988655443322111
Q ss_pred CceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCC
Q psy14540 192 HSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPP 241 (291)
Q Consensus 192 ~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p 241 (291)
..+.|.|.++..+|+|.|+|.|.|..|....++.|.|...|
T Consensus 54 ---------~~s~L~I~~~~~~D~G~Ytc~a~N~~G~~~~~~~l~V~~~P 94 (98)
T cd05762 54 ---------NSSKLTITEGQQEHCGCYTLEVENKLGSRQAQVNLTVVDKP 94 (98)
T ss_pred ---------CeeEEEECCCChhhCEEEEEEEEcCCCceeEEEEEEEecCC
Confidence 13456777777777777888888888887778888877655
No 24
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.65 E-value=2.3e-15 Score=95.74 Aligned_cols=90 Identities=28% Similarity=0.555 Sum_probs=72.2
Q ss_pred CCcceeec--ceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCC--eeEeceEEeeccceEEEEEEeecCCCCCeEE
Q psy14540 2 HPQLIYKF--IQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGD--RFVMGQYMSLHGDVISHVNISSVRVEDSGIY 77 (291)
Q Consensus 2 ~p~~~~~~--~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y 77 (291)
||.|...+ ....+..|+.+.|.|.+.+.|.+.+.|+++|..+... ++.. ....+.|.|.+++.+|+|.|
T Consensus 1 pp~i~~~~~~~~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~-------~~~~~~L~I~~v~~~D~G~Y 73 (95)
T cd05730 1 PPTIRARQSEVNATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSF-------NEDGSEMTILDVDKLDEAEY 73 (95)
T ss_pred CCccccCCcccceEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCCCCEEEE-------eCCCCEEEECCCChhhCEEE
Confidence 67776655 3447899999999999999999999999999987633 2211 11224599999999999999
Q ss_pred EEEEeCCCCceeeeeeEEEEc
Q psy14540 78 QCTATNRVGSQTHSADMRVYD 98 (291)
Q Consensus 78 ~C~~~~~~~~~~~~~~l~v~~ 98 (291)
+|.+.|..|.....+.|.|..
T Consensus 74 ~C~a~N~~G~~~~~~~L~V~~ 94 (95)
T cd05730 74 TCIAENKAGEQEAEIHLKVFA 94 (95)
T ss_pred EEEEEcCCCeEEEEEEEEEEe
Confidence 999999999988888888864
No 25
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.65 E-value=3.7e-15 Score=93.91 Aligned_cols=88 Identities=23% Similarity=0.433 Sum_probs=68.4
Q ss_pred ceeecceeeeecCCcEEEEEEecCCCC-CeeEEEE-CCeecCC-C-eeEeceEEeeccceEEEEEEeecCCCCCeEEEEE
Q psy14540 5 LIYKFIQQTLQPGPPVSLKCIATGNPT-PHISWKL-DGYPLAG-D-RFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCT 80 (291)
Q Consensus 5 ~~~~~~~~~v~~g~~v~l~C~~~~~~~-~~v~W~~-~~~~~~~-~-~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~ 80 (291)
+.+.|....+..|++++|.|.+.+.|. +.+.|++ ++..+.. . ++.. ...+...++|.|.+++.+|+|.|+|.
T Consensus 3 ~~~~p~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v----~~~~~~~~~L~I~~v~~~D~G~YtC~ 78 (96)
T cd05865 3 VDIVPSQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISV----VRNDDYSSTLTIYNANIDDAGIYKCV 78 (96)
T ss_pred EEEeCCccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEE----EeCCCCceEEEEeccChhhCEEEEEE
Confidence 456788888999999999999999884 7999998 7765542 2 2211 12233457899999999999999999
Q ss_pred EeCCC-CceeeeeeEEE
Q psy14540 81 ATNRV-GSQTHSADMRV 96 (291)
Q Consensus 81 ~~~~~-~~~~~~~~l~v 96 (291)
+.|.. |....++.|.|
T Consensus 79 A~N~~~g~~~~s~~l~v 95 (96)
T cd05865 79 VSNEDEGESEATVNVKI 95 (96)
T ss_pred EEcCCCCcEEEEEEEEE
Confidence 99986 77888877766
No 26
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.65 E-value=6e-15 Score=107.80 Aligned_cols=77 Identities=21% Similarity=0.342 Sum_probs=59.8
Q ss_pred ceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCCCCCCCCcccccCCceEEEEEEeecC----CCCceEEEEEC
Q psy14540 202 TSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGPFTFGELMEGVRTQVACVVQSG----DLPLSLQWYKN 277 (291)
Q Consensus 202 ~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~g~~v~l~C~~~~~----~p~~~v~W~~~ 277 (291)
...|.|.++..+|+|.|+|.|.|..+.....+.|.|..++ ....+.+|+.+.|+|.+..+ .|.|+|+|+||
T Consensus 97 ~~~L~I~~v~~~DsG~Y~C~a~N~~~~~~~~i~L~V~~~~-----~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKn 171 (227)
T PHA02826 97 SENLWIGNVINIDEGIYICTISSGNICEESTIRLTFDSGT-----INYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKN 171 (227)
T ss_pred CCeEEECCCChHHCEEEEEEEEECCcceEEEEEEEEecCC-----ccceEecCCCEEEEeeCCCCccccCCCceEEEEEC
Confidence 4578899999999999999999977776777777774332 11236789999999998433 45789999999
Q ss_pred CEEccC
Q psy14540 278 GLAISQ 283 (291)
Q Consensus 278 ~~~l~~ 283 (291)
|++|..
T Consensus 172 g~~l~~ 177 (227)
T PHA02826 172 GNIVLY 177 (227)
T ss_pred CEECCC
Confidence 999863
No 27
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.64 E-value=3.8e-15 Score=93.86 Aligned_cols=83 Identities=24% Similarity=0.437 Sum_probs=59.5
Q ss_pred CcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCC
Q psy14540 113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNH 192 (291)
Q Consensus 113 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~ 192 (291)
+..+.+.+|+.+.|.|.+ .|.|.|.+.|++++.++....+..+.........|.|.++..+|+|.|+|.+.|..|....
T Consensus 8 p~~v~v~~G~~v~L~C~v-~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~ 86 (92)
T cd05737 8 PDVVTIMEGKTLNLTCTV-FGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGETV 86 (92)
T ss_pred CceEEEeCCCcEEEEEEE-EecCCCeEEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcceE
Confidence 345788899999999999 7999999999999998876655544433222345677777777777777777766666555
Q ss_pred ceEE
Q psy14540 193 SSNL 196 (291)
Q Consensus 193 ~~~~ 196 (291)
.+.+
T Consensus 87 ~~~v 90 (92)
T cd05737 87 DVTV 90 (92)
T ss_pred EEEE
Confidence 5443
No 28
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.64 E-value=5.9e-15 Score=92.62 Aligned_cols=88 Identities=23% Similarity=0.366 Sum_probs=69.5
Q ss_pred ceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCC
Q psy14540 5 LIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNR 84 (291)
Q Consensus 5 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~ 84 (291)
++..|.+..+.+|+.+.|.|.+.+.|.|.+.|++++..+...... ..........|.|.+++..|.|.|+|.+.|.
T Consensus 3 ~v~~p~~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~~----~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~ 78 (90)
T cd04972 3 PVDGPNATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTD----TLETTVDIYNLQLSNITSETQTTVTCTAENP 78 (90)
T ss_pred cccCCcCEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCCccE----EEEecCCEEEEEEecCCcccCEEEEEEEECC
Confidence 445666777999999999999999999999999999877632211 1111233467999999999999999999999
Q ss_pred CCceeeeeeEEE
Q psy14540 85 VGSQTHSADMRV 96 (291)
Q Consensus 85 ~~~~~~~~~l~v 96 (291)
.|.....+.|.|
T Consensus 79 ~G~~~~~~~L~v 90 (90)
T cd04972 79 VGQANVSVQVTV 90 (90)
T ss_pred CCceeEEEEEeC
Confidence 998888777654
No 29
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.64 E-value=3.1e-15 Score=93.61 Aligned_cols=87 Identities=26% Similarity=0.459 Sum_probs=71.2
Q ss_pred CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEE
Q psy14540 2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTA 81 (291)
Q Consensus 2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~ 81 (291)
||.+...|....+.+|+.+.|.|.+.+.|.+.+.|++++..+....... .....|.|.+++.+|+|.|+|.+
T Consensus 1 p~~~~~~p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~--------~~~~~L~i~~v~~~D~G~Y~C~a 72 (88)
T cd04968 1 PSIIVVFPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEIS--------MSGAVLKIPNIQFEDEGTYECEA 72 (88)
T ss_pred CCcEEECCCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCccEEE--------EeCCEEEECCCCcccCEEEEEEE
Confidence 5777888888999999999999999999999999999877554221110 11246999999999999999999
Q ss_pred eCCCCceeeeeeEEE
Q psy14540 82 TNRVGSQTHSADMRV 96 (291)
Q Consensus 82 ~~~~~~~~~~~~l~v 96 (291)
.|..|.......|.|
T Consensus 73 ~N~~G~~~~~~~l~V 87 (88)
T cd04968 73 ENIKGKDTHQGRIYV 87 (88)
T ss_pred EECCCcEEEEEEEEE
Confidence 999999888887776
No 30
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.64 E-value=4.2e-15 Score=95.84 Aligned_cols=95 Identities=27% Similarity=0.540 Sum_probs=68.6
Q ss_pred CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEe-ceEEeeccceEEEEEE--eecCCCCCeEEE
Q psy14540 2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVM-GQYMSLHGDVISHVNI--SSVRVEDSGIYQ 78 (291)
Q Consensus 2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~i--~~~~~~d~G~y~ 78 (291)
||.|...|....+.+|+.+.|.|.+.+.|.+.+.|+|+|..+....... .............+.+ ..++.+|+|.|+
T Consensus 1 ~P~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y~ 80 (100)
T cd07693 1 PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVYV 80 (100)
T ss_pred CCeEEecCceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEEE
Confidence 7999999999999999999999999999999999999998876411100 0111111122222333 334789999999
Q ss_pred EEEeCCCCc-eeeeeeEEE
Q psy14540 79 CTATNRVGS-QTHSADMRV 96 (291)
Q Consensus 79 C~~~~~~~~-~~~~~~l~v 96 (291)
|.+.|..|. .+..+.|.|
T Consensus 81 C~a~N~~G~~~s~~~~l~v 99 (100)
T cd07693 81 CVAHNSLGEAVSRNASLEV 99 (100)
T ss_pred EEEEccccceecceEEEEe
Confidence 999999987 666666655
No 31
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=99.64 E-value=1.4e-14 Score=98.84 Aligned_cols=129 Identities=16% Similarity=0.326 Sum_probs=83.4
Q ss_pred EEEEeecCCCCCeEEEEEEeCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCC-ceeEE
Q psy14540 63 HVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPP-LTISW 141 (291)
Q Consensus 63 ~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~-~~~~W 141 (291)
+|+|.+++..|+|.|.|.+.+..+.....+.|.|..+|.. .. . +......+|+.+.|.|.+.+.+|. +.+.|
T Consensus 2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~~P~v-----~~-~-~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W 74 (139)
T cd05771 2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSEPPRV-----RL-S-LEKLVSMIEEPQTLICHIAGYYPLDVQVEW 74 (139)
T ss_pred eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEecCCce-----EE-e-CCCceeecCCcEEEEEEECCCCCCCeEEEE
Confidence 5899999999999999999987788888889999865522 11 1 122333378889999999655675 58999
Q ss_pred eECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEE
Q psy14540 142 LKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCV 221 (291)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~ 221 (291)
++++....... .. ........+..+..|.|.. .+.|.+.....++...|+|.
T Consensus 75 ~~~g~~~~~~~---~~-----~~~~~~~~~~~~~dgt~~~--------------------~s~L~v~~~~~~~g~~ytC~ 126 (139)
T cd05771 75 TREPPGDSPPP---VS-----LSNVSFSSHRQHQDGTYSL--------------------SSHLTLEPGTEDAGATYTCR 126 (139)
T ss_pred EECCCCCccce---ec-----cCCeEecceEeCCCCCEEE--------------------EEEEEecCCccCCCCEEEEE
Confidence 99886422100 00 0001111223344455554 24566666566677788888
Q ss_pred eeeCC
Q psy14540 222 ASNTV 226 (291)
Q Consensus 222 ~~~~~ 226 (291)
+.+..
T Consensus 127 V~H~~ 131 (139)
T cd05771 127 VSHVS 131 (139)
T ss_pred EEcCC
Confidence 87765
No 32
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.64 E-value=3.2e-15 Score=92.64 Aligned_cols=84 Identities=31% Similarity=0.607 Sum_probs=69.5
Q ss_pred cceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCC-eeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEe
Q psy14540 4 QLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGD-RFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTAT 82 (291)
Q Consensus 4 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~ 82 (291)
+|+..|.+..+..|+.+.|.|.+.+.|.+.+.|++++..+... ++.. .. ..|.|.+++.+|+|.|+|.+.
T Consensus 1 ~~~~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~-----~~----~~L~i~~~~~~D~G~Y~C~a~ 71 (85)
T cd05728 1 EWLKVISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEV-----EA----GDLRITKLSLSDSGMYQCVAE 71 (85)
T ss_pred CccccCCccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCCCCeEEE-----eC----CEEEEeeCCHHHCEEEEEEEE
Confidence 3567888899999999999999999999999999999988732 2221 11 258999999999999999999
Q ss_pred CCCCceeeeeeEEE
Q psy14540 83 NRVGSQTHSADMRV 96 (291)
Q Consensus 83 ~~~~~~~~~~~l~v 96 (291)
|..|.....+.|.|
T Consensus 72 N~~G~~~~~~~l~V 85 (85)
T cd05728 72 NKHGTIYASAELAV 85 (85)
T ss_pred CCCCeEEEEEEEEC
Confidence 99998887777654
No 33
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.64 E-value=8.1e-15 Score=90.50 Aligned_cols=83 Identities=28% Similarity=0.464 Sum_probs=61.9
Q ss_pred CcEEEEEEecCCCCC--eeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCceeeeeeEE
Q psy14540 18 PPVSLKCIATGNPTP--HISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMR 95 (291)
Q Consensus 18 ~~v~l~C~~~~~~~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~l~ 95 (291)
++++|.|.+.+.|.+ .+.|++++..+..................++|.|.+++..|+|.|+|.+.+..|.....+.|.
T Consensus 1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L~ 80 (85)
T cd05854 1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASATLV 80 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEEEEEEEE
Confidence 478999999998766 589999998876221100000111112346799999999999999999999999999999999
Q ss_pred EEcCC
Q psy14540 96 VYDAP 100 (291)
Q Consensus 96 v~~~~ 100 (291)
|..+|
T Consensus 81 V~~~P 85 (85)
T cd05854 81 VRGPP 85 (85)
T ss_pred EECCC
Confidence 98654
No 34
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.63 E-value=6.7e-15 Score=93.67 Aligned_cols=87 Identities=16% Similarity=0.221 Sum_probs=68.2
Q ss_pred eeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEE--eeccceEEEEEEeecCCCCCeEEEEEEeCCCCce
Q psy14540 11 QQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYM--SLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQ 88 (291)
Q Consensus 11 ~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~ 88 (291)
...+..|+.+.|.|.+.+.|.|.+.|+|+|.++........... .......++|.|.+++.+|+|.|+|.+.|..|..
T Consensus 12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~ 91 (101)
T cd05859 12 LEFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVK 91 (101)
T ss_pred eEEEecCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceE
Confidence 46788999999999999999999999999999874322111100 0112234689999999999999999999999998
Q ss_pred eeeeeEEEE
Q psy14540 89 THSADMRVY 97 (291)
Q Consensus 89 ~~~~~l~v~ 97 (291)
+.++.|.|.
T Consensus 92 ~~t~~l~V~ 100 (101)
T cd05859 92 SYTFALQIQ 100 (101)
T ss_pred EEEEEEEEE
Confidence 888888774
No 35
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.62 E-value=5.9e-15 Score=93.73 Aligned_cols=39 Identities=21% Similarity=0.399 Sum_probs=33.2
Q ss_pred CcceeecCCCceEEEEEeeCC-CCCceeEEeECCEeccCCC
Q psy14540 113 SRSIKVHSGDRAGVQCLVTKG-DPPLTISWLKNGLPILSDA 152 (291)
Q Consensus 113 ~~~~~~~~g~~~~l~C~~~~~-~p~~~~~W~~~~~~~~~~~ 152 (291)
.....+.+|+.+.|.|.+ .| .|.|.+.|+|+|.++....
T Consensus 10 ~~~~~v~~G~~v~L~c~v-~g~~P~p~v~W~Kdg~~i~~~~ 49 (101)
T cd04975 10 NTTIFVNLGENLNLVVEV-EAYPPPPHINWTYDNRTLTNKL 49 (101)
T ss_pred CceEEEECCCCEEEEEEE-EecCCCCccEEEeCCeeCCCCc
Confidence 345788899999999999 57 8999999999999987543
No 36
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.61 E-value=8e-15 Score=87.81 Aligned_cols=73 Identities=29% Similarity=0.435 Sum_probs=58.4
Q ss_pred EEEEEEecCCCCCeeEEEECCeecCC--CeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCceeeeeeEEE
Q psy14540 20 VSLKCIATGNPTPHISWKLDGYPLAG--DRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRV 96 (291)
Q Consensus 20 v~l~C~~~~~~~~~v~W~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~l~v 96 (291)
+.|.|.+.+.|.|.+.|+|++..+.. .++.. ...+.+..+|.|.+++.+|+|.|+|.+.|..|.......|.|
T Consensus 1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~~r~~~----~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05892 1 VKLECQISAIPPPKIFWKRNNEMVQYNTDRISL----YQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV 75 (75)
T ss_pred CEEEEEEEecCCCeEEEEECCEECcCCCCeEEE----EEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence 57999999999999999999998862 33222 112233457999999999999999999999999888877764
No 37
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.61 E-value=1.4e-14 Score=89.70 Aligned_cols=79 Identities=23% Similarity=0.385 Sum_probs=54.4
Q ss_pred ceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCC-ceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCc
Q psy14540 115 SIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDA-EITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHS 193 (291)
Q Consensus 115 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~ 193 (291)
.+.+.+|+.+.|.|.+ .|.|.|.+.|++++.++.... +..+... .....|.|..+...|+|.|+|.|.|..|....+
T Consensus 4 ~~~v~~G~~v~l~c~~-~G~P~P~v~W~k~~~~i~~~~~r~~~~~~-~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~ 81 (86)
T cd05894 4 TIVVVAGNKLRLDVPI-SGEPAPTVTWSRGDKAFTETEGRVRVESY-KDLSSFVIEGAEREDEGVYTITVTNPVGEDHAS 81 (86)
T ss_pred EEEEEcCCEEEEEeeE-eecCCCeEEEEECCEECccCCCeEEEEEc-CCeEEEEECCCccCcCEEEEEEEEeCCCcEEEE
Confidence 4677899999999999 799999999999999886532 3333222 124456666666666666666666666654444
Q ss_pred eE
Q psy14540 194 SN 195 (291)
Q Consensus 194 ~~ 195 (291)
+.
T Consensus 82 ~~ 83 (86)
T cd05894 82 LF 83 (86)
T ss_pred EE
Confidence 33
No 38
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.60 E-value=3.2e-14 Score=92.25 Aligned_cols=98 Identities=22% Similarity=0.337 Sum_probs=72.6
Q ss_pred CCcceeecceeee-e---cCCcEEEEEEecCCCCCeeEEEECCeecCC--CeeEeceEEeeccceEEEEEEeecC-CCCC
Q psy14540 2 HPQLIYKFIQQTL-Q---PGPPVSLKCIATGNPTPHISWKLDGYPLAG--DRFVMGQYMSLHGDVISHVNISSVR-VEDS 74 (291)
Q Consensus 2 ~p~~~~~~~~~~v-~---~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~ 74 (291)
+|.|...|....+ . .|..++|.|.+.+.|.+.+.|++++..+.. .++..... .......+.|+|.+++ .+|.
T Consensus 4 ~P~~~~~~~~~~~~~~~~~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~-~~~~~~~s~L~I~~v~~~~D~ 82 (109)
T cd05773 4 APDLQKGPQLRKVASRGDGSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTE-HTGTVHTSILTIINVSAALDY 82 (109)
T ss_pred ccccccCCceEEEEEecCCCCEEEEEEECcccCCCEEEEEECCEECCCCCCeEEEEee-ccCccceeEEEECcCCccCCC
Confidence 6777776653322 2 457899999999999999999999998862 22222111 1111223679999997 5899
Q ss_pred eEEEEEEeCCCCceeeeeeEEEEcCC
Q psy14540 75 GIYQCTATNRVGSQTHSADMRVYDAP 100 (291)
Q Consensus 75 G~y~C~~~~~~~~~~~~~~l~v~~~~ 100 (291)
|.|+|.+.|..|.....+.|.+...|
T Consensus 83 G~Y~C~A~N~~G~~~~~i~L~~~~~p 108 (109)
T cd05773 83 ALFTCTAHNSLGEDSLDIQLVSTSRP 108 (109)
T ss_pred EEEEEEEEeCCccCcEEEEEEecCCC
Confidence 99999999999999999999988765
No 39
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.60 E-value=6.4e-15 Score=88.23 Aligned_cols=72 Identities=21% Similarity=0.356 Sum_probs=51.6
Q ss_pred eEEEEEeeCCCCCceeEEeECCEeccCC-CceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEE
Q psy14540 124 AGVQCLVTKGDPPLTISWLKNGLPILSD-AEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNL 196 (291)
Q Consensus 124 ~~l~C~~~~~~p~~~~~W~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~ 196 (291)
+.|.|.+ .|.|.|.+.|+|++..+... .++.+...+.+...|.|..+..+|.|.|+|.|.|..|.......|
T Consensus 1 v~l~C~v-~G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L 73 (75)
T cd05892 1 VKLECQI-SAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARL 73 (75)
T ss_pred CEEEEEE-EecCCCeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEE
Confidence 5799999 79999999999999988643 344443333334467777777777777777777777766555444
No 40
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.60 E-value=7.3e-15 Score=88.55 Aligned_cols=73 Identities=40% Similarity=0.679 Sum_probs=59.9
Q ss_pred cCCcEEEEEEecCCCCCeeEEEECCeecCCC-eeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCceeeeeeE
Q psy14540 16 PGPPVSLKCIATGNPTPHISWKLDGYPLAGD-RFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADM 94 (291)
Q Consensus 16 ~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~l 94 (291)
+|+++.|.|.+.+.|.|.+.|+|++..+... +... . . ..+|.|.+++.+|+|.|+|.+.|..|.....+.|
T Consensus 1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~~~~~~-----~-~--~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L 72 (74)
T cd05745 1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLV-----L-S--SGTLRISRVALHDQGQYECQAVNIVGSQRTVAQL 72 (74)
T ss_pred CCCeEEEEeECCEecCCEEEEEECCEECCCCCCeEE-----c-c--CCeEEEeeCCHHhCEEEEEEEEeCCCceeEEEEE
Confidence 6899999999999999999999999887632 2211 1 1 1369999999999999999999999998887777
Q ss_pred EE
Q psy14540 95 RV 96 (291)
Q Consensus 95 ~v 96 (291)
.|
T Consensus 73 ~V 74 (74)
T cd05745 73 TV 74 (74)
T ss_pred eC
Confidence 54
No 41
>KOG3515|consensus
Probab=99.60 E-value=2.2e-14 Score=118.49 Aligned_cols=233 Identities=20% Similarity=0.251 Sum_probs=144.4
Q ss_pred CcceeecceeeeecCCcEEEEEEecC-CCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEE
Q psy14540 3 PQLIYKFIQQTLQPGPPVSLKCIATG-NPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTA 81 (291)
Q Consensus 3 p~~~~~~~~~~v~~g~~v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~ 81 (291)
|.....+.+..+..|++|.|.|.+.+ .|...++|++.++.+. .++.. ....+|.........-+.|.|++
T Consensus 8 pv~~~~~l~~~~~~g~~v~l~C~v~~~pp~~~~eW~h~~~~~~-~~~~~--------~~~~~~~~~~~~~~~~~~~~c~a 78 (741)
T KOG3515|consen 8 PVCESSSLTVGLRLGEDVPLPCRVNSNPPEIDVEWYHSTSGEH-GRYAT--------IADPTLVTTGDVRDTVAELNCRA 78 (741)
T ss_pred ccccCCCCChhhccCCcceeeeecCCCCCCcceEEEecCcccc-ccccc--------ccCCceeeecchhhhhhhhhhhh
Confidence 44444444457899999999999998 5577899999877655 11111 11133555566666678999999
Q ss_pred eCCCCc-eeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEE-EeeCCCCCceeEEeECCEeccCCCceEEecc
Q psy14540 82 TNRVGS-QTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQC-LVTKGDPPLTISWLKNGLPILSDAEITIRSS 159 (291)
Q Consensus 82 ~~~~~~-~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C-~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~ 159 (291)
.+..+. ....+.+.+...+.. ...........+..+.+.| ....+.|.+.+.|+.++.............
T Consensus 79 ~ns~~~~~~~~~~l~v~~~pa~-------~~~~~e~~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~~~~~- 150 (741)
T KOG3515|consen 79 FNSVGMPSRCPMILDVDYPPAC-------LPELGEIFQVDKGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVNQRGRV- 150 (741)
T ss_pred cccccCceecceeeccccCccc-------cccccchhhhcCCeEEEEEeecCCCCCCcceeeeeccEEeecccCCcccc-
Confidence 876443 444555666554421 1112223445778899999 444578889999999875443221100000
Q ss_pred CCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCC---ccCCceeEEE
Q psy14540 160 GEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTV---ASDNHSSNLR 236 (291)
Q Consensus 160 ~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~---~~~~~~~~l~ 236 (291)
.. ....+.| ...+.+.+...+.++.|.|+|.+.+.. ........+.
T Consensus 151 ---------~~--~a~gss~--------------------t~~s~l~~~v~Rka~~g~~tC~A~nr~s~~l~~~~~~~i~ 199 (741)
T KOG3515|consen 151 ---------GA--GALGSSY--------------------TEPSLLKQTVSRKADNGNYTCPANNRNSPGLSFAKQLTII 199 (741)
T ss_pred ---------cc--cccCcee--------------------ccccceeeEEEEecCCceeEcccccccCccccccceeEee
Confidence 00 0001111 013456777788899999999999853 3344444444
Q ss_pred EecC---CCCCCCCc-ccccCCceEEEEEEeecCCCCceEEEEECCEEccC
Q psy14540 237 VNVP---PHIGPFTF-GELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQ 283 (291)
Q Consensus 237 v~~~---p~~~~~~~-~~~~~g~~v~l~C~~~~~~p~~~v~W~~~~~~l~~ 283 (291)
+..+ ..+..... ....+|+.+.|.|.+..+.|.++++|+++...+..
T Consensus 200 v~~~~~~~~~~~~~~~qsF~~g~~inlvc~~~gg~P~~~~~w~~~s~~~~~ 250 (741)
T KOG3515|consen 200 VEAPCKGIGITGAQEQQSFTEGQTINLVCNAQGGNPSQQQTWYKDSRPQSE 250 (741)
T ss_pred cccccccceecchhhcCcccccceEEEEehhhcCCcchhhhhccccccchh
Confidence 4432 12222222 22899999999999878999999999999887654
No 42
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.59 E-value=3.1e-14 Score=88.79 Aligned_cols=86 Identities=27% Similarity=0.515 Sum_probs=65.6
Q ss_pred ceeecceeeeecCCcEEEEEEecCCCCCeeEEEE-CCeecCC-CeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEe
Q psy14540 5 LIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKL-DGYPLAG-DRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTAT 82 (291)
Q Consensus 5 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~-~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~ 82 (291)
+.+.|.+..+.+|+++.|.|.+.|.|. .+.|++ ++..+.. .++.. ......+.|.|.+++.+|+|.|+|.+.
T Consensus 3 ~~~~~~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~~r~~~-----~~~g~~~~L~I~~v~~~D~G~Y~C~A~ 76 (92)
T cd05866 3 VSISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSSQRVVV-----QKEGVRSRLTIYNANIEDAGIYRCQAT 76 (92)
T ss_pred EEEEecceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCCCCEEE-----EeCCCeeEEEEecCChHHCEEEEEEEE
Confidence 456788889999999999999999887 899998 4655542 22222 223334679999999999999999999
Q ss_pred CCCCce-eeeeeEEE
Q psy14540 83 NRVGSQ-THSADMRV 96 (291)
Q Consensus 83 ~~~~~~-~~~~~l~v 96 (291)
|..|.. .+++.|.+
T Consensus 77 N~~G~~~~~~i~l~~ 91 (92)
T cd05866 77 DAKGQTQEATVVLEI 91 (92)
T ss_pred cCCCcEEEEEEEEEE
Confidence 988874 55555544
No 43
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.59 E-value=2.6e-14 Score=89.83 Aligned_cols=85 Identities=25% Similarity=0.432 Sum_probs=66.8
Q ss_pred ecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCC-CeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCC
Q psy14540 8 KFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAG-DRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVG 86 (291)
Q Consensus 8 ~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~ 86 (291)
-|..+.+.+|+.+.|.|.+.+.|.+.+.|++++..+.. .++.. .......++|.|.+++.+|+|.|+|.+.|..|
T Consensus 7 ~p~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~~~~~~----~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G 82 (92)
T cd05891 7 LPDVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSV----KLEQGKYASLTIKGVTSEDSGKYSINVKNKYG 82 (92)
T ss_pred CCCcEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCCCCEEE----EEcCCCEEEEEECCCChhhCEEEEEEEEeCCC
Confidence 45677899999999999999889999999999987763 22222 11122235799999999999999999999999
Q ss_pred ceeeeeeEEE
Q psy14540 87 SQTHSADMRV 96 (291)
Q Consensus 87 ~~~~~~~l~v 96 (291)
.....+.|.|
T Consensus 83 ~~~~~~~v~~ 92 (92)
T cd05891 83 GETVDVTVSV 92 (92)
T ss_pred ceeeEEEEEC
Confidence 8887776653
No 44
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.59 E-value=2.2e-14 Score=89.66 Aligned_cols=87 Identities=26% Similarity=0.432 Sum_probs=66.6
Q ss_pred CCcce--eecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEE
Q psy14540 2 HPQLI--YKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQC 79 (291)
Q Consensus 2 ~p~~~--~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C 79 (291)
.|.|. ..+..+.+.+|++++|.|.+.+. .+.+.|++++..+...+.... ....+|.|.+++.+|+|.|+|
T Consensus 1 ~p~~~~~~~~~~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~~~~~~~-------~~~~~L~I~~v~~~D~G~Y~C 72 (91)
T cd05740 1 KPVINSNNSVGNQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVPPRLQLS-------NDNRTLTFNNVTRSDTGHYQC 72 (91)
T ss_pred CCEeecccccCccccccCCcEEEEEEeCCC-CCEEEEEECCEECCCCCEEEe-------CCCCEEEECcCChhhCEEEEE
Confidence 36564 34456789999999999999998 999999999988765432221 111359999999999999999
Q ss_pred EEeCCCCc-eeeeeeEEE
Q psy14540 80 TATNRVGS-QTHSADMRV 96 (291)
Q Consensus 80 ~~~~~~~~-~~~~~~l~v 96 (291)
.+.|..|. .+..+.|.|
T Consensus 73 ~a~N~~G~~~S~~~~L~V 90 (91)
T cd05740 73 EASNEVSNMTSDPYILNV 90 (91)
T ss_pred EEEcCCCCEEeeeEEEEe
Confidence 99999886 444666655
No 45
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.59 E-value=1.5e-14 Score=90.05 Aligned_cols=77 Identities=26% Similarity=0.479 Sum_probs=50.9
Q ss_pred CcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCC
Q psy14540 113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNH 192 (291)
Q Consensus 113 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~ 192 (291)
+....+.+|+.+.|.|.+ .|.|.|.+.|++++..+....+... ....|.|.++..+|.|.|+|.|.|..|....
T Consensus 8 ~~~~~~~~G~~v~l~C~~-~G~P~P~v~W~k~~~~~~~~~~~~~-----~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~ 81 (88)
T cd05851 8 FKDTYALKGQNVTLECFA-LGNPVPVIRWRKILEPMPATAEISM-----SGAVLKIFNIQPEDEGTYECEAENIKGKDKH 81 (88)
T ss_pred cccEEEeCCCcEEEEEEe-cccCCCEEEEEECCcCCCCCCEEec-----CCCEEEECcCChhhCEEEEEEEEcCCCceEE
Confidence 345678899999999999 7999999999999877654322211 1224555555555555555555555555444
Q ss_pred ceE
Q psy14540 193 SSN 195 (291)
Q Consensus 193 ~~~ 195 (291)
...
T Consensus 82 ~~~ 84 (88)
T cd05851 82 QAR 84 (88)
T ss_pred EEE
Confidence 433
No 46
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.59 E-value=1.6e-14 Score=86.66 Aligned_cols=73 Identities=32% Similarity=0.482 Sum_probs=58.2
Q ss_pred EEEEEEecCCCCCeeEEEECCeecCC--CeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCceeeeeeEEE
Q psy14540 20 VSLKCIATGNPTPHISWKLDGYPLAG--DRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRV 96 (291)
Q Consensus 20 v~l~C~~~~~~~~~v~W~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~l~v 96 (291)
|.|.|.+.|.|.|.+.|+|++..+.. .++... ..+.+...|.|.+++.+|+|.|+|.+.|..|..+....|.|
T Consensus 1 v~l~C~v~G~P~P~v~W~k~~~~l~~~~~~~~~~----~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05893 1 VRLECRVSGVPHPQIFWKKENESLTHNTDRVSMH----QDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV 75 (75)
T ss_pred CEEEEEEeEecCCEEEEEECCEECCCCCCeEEEE----EcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence 57999999999999999999988863 222221 12224457999999999999999999999999888877754
No 47
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.59 E-value=1.1e-14 Score=84.71 Aligned_cols=66 Identities=20% Similarity=0.363 Sum_probs=55.6
Q ss_pred EEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCceeeeeeEEEE
Q psy14540 20 VSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVY 97 (291)
Q Consensus 20 v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~l~v~ 97 (291)
++|.|.+.+.|.|.++|+|+|..+.... ....|.|.++..+|+|.|+|.+.|..|...++..+++.
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~------------~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l~ 66 (67)
T cd05863 1 VKLPVKVAAYPPPEFQWYKDGKLISGKH------------SQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLELI 66 (67)
T ss_pred CEEEEEEEEeCCCEEEEEECCEECcccC------------CcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEEE
Confidence 5799999999999999999999886211 12469999999999999999999999988877777664
No 48
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.57 E-value=4.3e-14 Score=84.90 Aligned_cols=74 Identities=18% Similarity=0.360 Sum_probs=56.5
Q ss_pred EEEEecCCCCCeeEEEECCeecCCCeeE-eceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCceeeeeeEE
Q psy14540 22 LKCIATGNPTPHISWKLDGYPLAGDRFV-MGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMR 95 (291)
Q Consensus 22 l~C~~~~~~~~~v~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~l~ 95 (291)
|.|.+.|.|.|.++|+|+|..+...... ..............|.|.+++..|+|.|+|.+.|..|...+.+.+.
T Consensus 3 i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 77 (79)
T cd05855 3 IPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH 77 (79)
T ss_pred EEEEEeEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence 7899999999999999999999744322 1111111223356799999999999999999999999887776553
No 49
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.57 E-value=2.8e-14 Score=86.98 Aligned_cols=82 Identities=20% Similarity=0.400 Sum_probs=61.1
Q ss_pred CcEEEEEEecC--CCCCeeEEEECCeecCCCeeEeceEEeecc-ceEEEEEEeecCCCCCeEEEEEEeCCCCceeeeeeE
Q psy14540 18 PPVSLKCIATG--NPTPHISWKLDGYPLAGDRFVMGQYMSLHG-DVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADM 94 (291)
Q Consensus 18 ~~v~l~C~~~~--~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~l 94 (291)
+++.|.|.+.. .+.+.+.|++||+.+...... ..+....+ .....|.|.+++..|+|.|+|.+.+..+....+..|
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~-~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L 79 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDG-DHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADL 79 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEECCEECcccCCC-ccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEEE
Confidence 47899999986 447789999999998621000 01111111 122469999999999999999999999999999999
Q ss_pred EEEcCC
Q psy14540 95 RVYDAP 100 (291)
Q Consensus 95 ~v~~~~ 100 (291)
.|.++|
T Consensus 80 ~V~~pP 85 (85)
T cd05853 80 IVRGPP 85 (85)
T ss_pred EEecCC
Confidence 998764
No 50
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.57 E-value=2.2e-14 Score=86.47 Aligned_cols=72 Identities=28% Similarity=0.507 Sum_probs=52.4
Q ss_pred CCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEE
Q psy14540 120 SGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNL 196 (291)
Q Consensus 120 ~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~ 196 (291)
+|+.+.|.|.+ .|.|.|.+.|++++..+....+..... ...|.|.++...|.|.|+|.|.|..|.......+
T Consensus 1 eG~~v~l~C~~-~g~P~p~i~W~k~g~~~~~~~~~~~~~----~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L 72 (74)
T cd05745 1 EGQTVDFLCEA-QGYPQPVIAWTKGGSQLSVDRRHLVLS----SGTLRISRVALHDQGQYECQAVNIVGSQRTVAQL 72 (74)
T ss_pred CCCeEEEEeEC-CEecCCEEEEEECCEECCCCCCeEEcc----CCeEEEeeCCHHhCEEEEEEEEeCCCceeEEEEE
Confidence 58999999999 799999999999999886554433221 2357777777777777777777777665555443
No 51
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.57 E-value=2.2e-14 Score=85.62 Aligned_cols=72 Identities=26% Similarity=0.488 Sum_probs=58.5
Q ss_pred CCcEEEEEEecCCCCCeeEEEECCeecC-CCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCceeeeeeEE
Q psy14540 17 GPPVSLKCIATGNPTPHISWKLDGYPLA-GDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMR 95 (291)
Q Consensus 17 g~~v~l~C~~~~~~~~~v~W~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~l~ 95 (291)
|+.+.|.|.+.+.|.+.+.|+|++..+. ..++.+. .+ .+|.|.+++.+|+|.|+|.+.|..|.......|.
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~r~~~~------~~--g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~ 72 (73)
T cd05852 1 GGRVIIECKPKAAPKPKFSWSKGTELLVNNSRISIW------DD--GSLEILNITKLDEGSYTCFAENNRGKANSTGVLS 72 (73)
T ss_pred CCeEEEEEecceeCCCEEEEEeCCEecccCCCEEEc------CC--CEEEECcCChhHCEEEEEEEECCCCceeEEEEEE
Confidence 7889999999999999999999998765 3333221 11 3599999999999999999999999888877765
Q ss_pred E
Q psy14540 96 V 96 (291)
Q Consensus 96 v 96 (291)
|
T Consensus 73 ~ 73 (73)
T cd05852 73 V 73 (73)
T ss_pred C
Confidence 4
No 52
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.56 E-value=6.6e-14 Score=87.08 Aligned_cols=82 Identities=28% Similarity=0.528 Sum_probs=63.8
Q ss_pred eeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCceeee
Q psy14540 12 QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQTHS 91 (291)
Q Consensus 12 ~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~ 91 (291)
+.+.+|+.+.|.|.+.+.|.+.+.|+|+|..+........ ... ......|.|.+++.+|+|.|+|.+.|..|.....
T Consensus 4 ~~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~-~~~--~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~ 80 (85)
T cd05857 4 HAVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGG-YKV--RNQHWSLIMESVVPSDKGNYTCVVENEYGSINHT 80 (85)
T ss_pred EEcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceee-eEE--eCCceEEEEccCCcccCEEEEEEEEeCCCEEEEE
Confidence 4688999999999999999999999999998873221110 011 1123568999999999999999999999988888
Q ss_pred eeEEE
Q psy14540 92 ADMRV 96 (291)
Q Consensus 92 ~~l~v 96 (291)
+.|.|
T Consensus 81 ~~l~v 85 (85)
T cd05857 81 YHLDV 85 (85)
T ss_pred EEEEC
Confidence 77654
No 53
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.56 E-value=6.8e-14 Score=87.92 Aligned_cols=82 Identities=20% Similarity=0.381 Sum_probs=52.9
Q ss_pred CcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCC
Q psy14540 113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNH 192 (291)
Q Consensus 113 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~ 192 (291)
+..+.+.+|+.+.|.|.+ .+.|.+.+.|++++..+....++...........|.|..+..+|.|.|+|.+.|..|....
T Consensus 8 p~~v~v~eG~~v~L~C~v-~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~ 86 (92)
T cd05891 8 PDVVTIMEGKTLNLTCTV-FGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGETV 86 (92)
T ss_pred CCcEEEcCCCEEEEEEEE-EEeCCCeEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCceee
Confidence 345788999999999998 6889999999999988765544333222211234555555555555555555555554444
Q ss_pred ceE
Q psy14540 193 SSN 195 (291)
Q Consensus 193 ~~~ 195 (291)
.+.
T Consensus 87 ~~~ 89 (92)
T cd05891 87 DVT 89 (92)
T ss_pred EEE
Confidence 433
No 54
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.56 E-value=5.6e-14 Score=87.22 Aligned_cols=83 Identities=28% Similarity=0.434 Sum_probs=60.7
Q ss_pred CcEEEEEEecCCCCC--eeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCceeeeeeEE
Q psy14540 18 PPVSLKCIATGNPTP--HISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMR 95 (291)
Q Consensus 18 ~~v~l~C~~~~~~~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~l~ 95 (291)
+++.|.|.+.+.|.+ .+.|+++|..+....................|.|.+++..|+|.|+|.+.+..|.......|.
T Consensus 1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~ 80 (85)
T cd04970 1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADLI 80 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEEEE
Confidence 578999999988766 579999998876221100000001112235699999999999999999999999999999999
Q ss_pred EEcCC
Q psy14540 96 VYDAP 100 (291)
Q Consensus 96 v~~~~ 100 (291)
|..+|
T Consensus 81 V~~pP 85 (85)
T cd04970 81 VRGPP 85 (85)
T ss_pred EECCC
Confidence 88754
No 55
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.56 E-value=4.9e-14 Score=85.38 Aligned_cols=75 Identities=31% Similarity=0.614 Sum_probs=59.0
Q ss_pred CCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCceeeeeeEEE
Q psy14540 17 GPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRV 96 (291)
Q Consensus 17 g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~l~v 96 (291)
|+++.|.|.+.+.|.|.++|+++|..+...... .... . ....|.|.+++.+|+|.|+|.+.|..|.......|.|
T Consensus 1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~-~~~~-~---~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 75 (76)
T cd05867 1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPD-PRRH-V---SSGALILTDVQPSDTAVYQCEARNRHGNLLANAHVHV 75 (76)
T ss_pred CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCC-ceEE-e---eCCEEEECCCChhhCEEEEEEEECCCCeEEEEEEEEE
Confidence 789999999999999999999999887632110 0011 1 1135899999999999999999999999888877776
No 56
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.56 E-value=3e-14 Score=86.07 Aligned_cols=67 Identities=22% Similarity=0.371 Sum_probs=55.6
Q ss_pred CcceeecceeeeecCCcEEEEEEecCCCC-CeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEE
Q psy14540 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPT-PHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTA 81 (291)
Q Consensus 3 p~~~~~~~~~~v~~g~~v~l~C~~~~~~~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~ 81 (291)
|.+.+.|....+.+|++++|.|.+.+.|. ..+.|++|+..+... ...|.|.++ .+|+|.|+|.+
T Consensus 1 ~vv~~~P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~~--------------~~~l~i~~~-~~dsG~Y~C~a 65 (78)
T cd05752 1 AVVSLDPPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLETT--------------TNSYRIRAA-NNDSGEYRCQT 65 (78)
T ss_pred CeEEeCCCCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEeecc--------------CCeEEEeec-ccCCEEeEEEC
Confidence 67888999999999999999999988664 469999999876311 134789999 99999999999
Q ss_pred eCC
Q psy14540 82 TNR 84 (291)
Q Consensus 82 ~~~ 84 (291)
.+.
T Consensus 66 ~~~ 68 (78)
T cd05752 66 QGS 68 (78)
T ss_pred CCC
Confidence 753
No 57
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.56 E-value=1e-13 Score=88.40 Aligned_cols=91 Identities=26% Similarity=0.408 Sum_probs=69.2
Q ss_pred CCcceeecceeeeecCCcEEEEEEecCCCCC-eeEEEECCeecCC---CeeEeceEEeeccceEEEEEEeecCCCC-CeE
Q psy14540 2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTP-HISWKLDGYPLAG---DRFVMGQYMSLHGDVISHVNISSVRVED-SGI 76 (291)
Q Consensus 2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~-~v~W~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~i~~~~~~d-~G~ 76 (291)
||.|. .+....+.+|+.+.|.|.+.+.|.| .+.|++++..+.. .++.+.... ......++|.|.+++.+| .|.
T Consensus 2 pp~i~-~~~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~-~~~~~~s~L~I~~v~~~d~~G~ 79 (98)
T cd05758 2 PPIIT-SEATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDP-SPGGVLSTLTISNTQESDFQTS 79 (98)
T ss_pred CCeEc-CCCcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEec-CCCceEEEEEECCcccccccee
Confidence 56664 4667789999999999999998888 6999999988762 334332221 123445789999999955 899
Q ss_pred EEEEEeCCCCceeeeeeE
Q psy14540 77 YQCTATNRVGSQTHSADM 94 (291)
Q Consensus 77 y~C~~~~~~~~~~~~~~l 94 (291)
|+|.+.|..|.....+.|
T Consensus 80 Y~C~A~N~~G~~~~~~~L 97 (98)
T cd05758 80 YNCTAWNSFGSGTAIISL 97 (98)
T ss_pred EEEEEEcCCCcccEEEEe
Confidence 999999999987776654
No 58
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.56 E-value=3.6e-14 Score=90.30 Aligned_cols=89 Identities=21% Similarity=0.282 Sum_probs=57.3
Q ss_pred ceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCce
Q psy14540 115 SIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSS 194 (291)
Q Consensus 115 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~ 194 (291)
...+..|+.+.|.|.+ .|+|.|.+.|+|+|.++............ +...
T Consensus 12 ~~~~~~~~~~~l~~~v-~g~P~P~v~W~kdg~~l~~~~~~~~~~~~--------------~~~~---------------- 60 (101)
T cd05859 12 LEFANLHEVKEFVVEV-EAYPPPQIRWLKDNRTLIENLTEITTSEH--------------NVQE---------------- 60 (101)
T ss_pred eEEEecCCcEEEEEEE-EEeCCCceEEEECCEECcCCcceEEeccc--------------cccc----------------
Confidence 4677789999999999 79999999999999998755432111000 0000
Q ss_pred EEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEe
Q psy14540 195 NLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVN 238 (291)
Q Consensus 195 ~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~ 238 (291)
..+.++|.|..+..+|+|.|+|.|.|..|..+.++.|.|.
T Consensus 61 ----~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~~~t~~l~V~ 100 (101)
T cd05859 61 ----TRYVSKLKLIRAKEEDSGLYTALAQNEDAVKSYTFALQIQ 100 (101)
T ss_pred ----eeeccEEEEeeCCHHHCEEEEEEEEcCCceEEEEEEEEEE
Confidence 0113456666666666666666666666666666666554
No 59
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.55 E-value=8.2e-14 Score=83.90 Aligned_cols=73 Identities=27% Similarity=0.407 Sum_probs=57.9
Q ss_pred EEEEEEecCCCCCeeEEEECCeecCCC--eeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCceeeeeeEEE
Q psy14540 20 VSLKCIATGNPTPHISWKLDGYPLAGD--RFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRV 96 (291)
Q Consensus 20 v~l~C~~~~~~~~~v~W~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~l~v 96 (291)
++|.|.+.+.|.|.+.|+|++..+... ++.. ...+....+|.|.+++.+|+|.|+|.+.|..|.......|.|
T Consensus 1 v~L~C~v~G~P~P~v~W~k~~~~i~~~~~r~~~----~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 75 (75)
T cd05744 1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISL----YQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV 75 (75)
T ss_pred CEEEEEEeecCCCeEEEEECCEECCCCCCcEEE----EEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence 579999999999999999999988732 2221 112234457999999999999999999999998888777654
No 60
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.55 E-value=1.1e-13 Score=87.33 Aligned_cols=83 Identities=31% Similarity=0.601 Sum_probs=60.3
Q ss_pred cCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCC
Q psy14540 111 SNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASD 190 (291)
Q Consensus 111 ~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~ 190 (291)
..+....+.+|+.+.|.|.+ .+.|.+.+.|+++|..+....+..+... .....|.|.++..+|.|.|+|.+.|..|..
T Consensus 8 ~~p~~~~~~~G~~~~L~C~~-~g~P~p~v~W~k~g~~l~~~~~~~~~~~-~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~ 85 (92)
T cd05747 8 TKPRSLTVSEGESARFSCDV-DGEPAPTVTWMREGQIIVSSQRHQITST-EYKSTFEISKVQMSDEGNYTVVVENSEGKQ 85 (92)
T ss_pred ccCccEEEeCCCcEEEEEEE-eecCCCEEEEEECCEECCCCCcEEEEEc-CCeeEEEECCCCcccCEeEEEEEEcCCCCE
Confidence 34556889999999999999 7999999999999988766555444322 224567777777777777777777776655
Q ss_pred CCceE
Q psy14540 191 NHSSN 195 (291)
Q Consensus 191 ~~~~~ 195 (291)
...+.
T Consensus 86 ~~~~~ 90 (92)
T cd05747 86 EAQFT 90 (92)
T ss_pred eEEEE
Confidence 54433
No 61
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.55 E-value=1.1e-13 Score=83.44 Aligned_cols=73 Identities=29% Similarity=0.520 Sum_probs=58.9
Q ss_pred cEEEEEEecCCCCCeeEEEECCeecC-CCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCceeeeeeEEE
Q psy14540 19 PVSLKCIATGNPTPHISWKLDGYPLA-GDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRV 96 (291)
Q Consensus 19 ~v~l~C~~~~~~~~~v~W~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~l~v 96 (291)
.+.|.|.+.+.|.|.+.|+++|..+. ..+... ......+.|.|.+++..|+|.|+|.+.|..|..+..+.|.|
T Consensus 1 ~~~l~c~~~G~P~p~v~W~k~g~~l~~~~~~~~-----~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 74 (74)
T cd05748 1 SVRLEVPISGRPTPTVTWSKDGKPLKLSGRVQI-----ETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV 74 (74)
T ss_pred CEEEEeeEeeeCCCeEEEEECCEEcCCCCeEEE-----EECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence 47899999999999999999999885 333222 12234577999999999999999999999998888777654
No 62
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.55 E-value=5.6e-14 Score=84.93 Aligned_cols=76 Identities=33% Similarity=0.530 Sum_probs=59.9
Q ss_pred CCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCceeeeeeEEE
Q psy14540 17 GPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRV 96 (291)
Q Consensus 17 g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~l~v 96 (291)
|+++.|.|.+.+.|.|.|.|+++|+.+........ ....+ ..|.|.+++..|+|.|+|.+.|..|....++.|.|
T Consensus 1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~--~~~~~---~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v 75 (76)
T cd05868 1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPS--RKVDG---DTIIFSKVQERSSAVYQCNASNEYGYLLANAFVNV 75 (76)
T ss_pred CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCce--EEecC---CEEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEe
Confidence 78999999999999999999999998762211000 11111 25789999999999999999999999999888877
Q ss_pred E
Q psy14540 97 Y 97 (291)
Q Consensus 97 ~ 97 (291)
+
T Consensus 76 ~ 76 (76)
T cd05868 76 L 76 (76)
T ss_pred C
Confidence 3
No 63
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.55 E-value=7.1e-14 Score=85.22 Aligned_cols=77 Identities=27% Similarity=0.528 Sum_probs=60.2
Q ss_pred cceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCC-CeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCc
Q psy14540 9 FIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAG-DRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGS 87 (291)
Q Consensus 9 ~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~ 87 (291)
|....+.+|+.+.|.|.+.+. .+.+.|+|+|..+.. .++.. .+ ..|.|.+++.+|+|.|+|.+.+..|.
T Consensus 1 ~~~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~~~~~~------~~---~~L~I~~~~~~DsG~Y~C~a~n~~g~ 70 (79)
T cd04973 1 VESYSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGENNRTRI------TG---EEVQIKDAVPRDSGLYACVTSSPSGS 70 (79)
T ss_pred CCcEEecCCCCEEEEEEecCC-CceEEEeeCCcCCCCCceEEE------eC---CEEEECCCChhhCEEEEEEEeCCCCc
Confidence 456778999999999999875 568999999988873 23222 11 25899999999999999999988777
Q ss_pred eeeeeeEE
Q psy14540 88 QTHSADMR 95 (291)
Q Consensus 88 ~~~~~~l~ 95 (291)
....+.++
T Consensus 71 ~~~~~~v~ 78 (79)
T cd04973 71 DTTYFSVN 78 (79)
T ss_pred ccEEEEEe
Confidence 66665554
No 64
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.55 E-value=7.4e-14 Score=88.00 Aligned_cols=71 Identities=28% Similarity=0.551 Sum_probs=43.5
Q ss_pred ceeecCCCceEEEEEeeCCCC-CceeEEeE-CCEeccC-CCceEEeccCCceEEEEEeeCCCCCceeEEEEEEec
Q psy14540 115 SIKVHSGDRAGVQCLVTKGDP-PLTISWLK-NGLPILS-DAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNT 186 (291)
Q Consensus 115 ~~~~~~g~~~~l~C~~~~~~p-~~~~~W~~-~~~~~~~-~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~ 186 (291)
...+..|+.+.|.|.+ .|.| +|.+.|++ ++..+.. ..+..........+.|.|..+..+|.|.|+|.|.|.
T Consensus 9 ~~~v~~G~~v~l~C~v-~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~ 82 (96)
T cd05865 9 QGEISVGESKFFLCQV-AGEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNE 82 (96)
T ss_pred ccEECCCCeEEEEEEE-eCCCCCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcC
Confidence 3568899999999999 6888 47999998 7766544 223322222222344555555555555555555544
No 65
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.55 E-value=5.1e-14 Score=84.06 Aligned_cols=71 Identities=30% Similarity=0.520 Sum_probs=54.5
Q ss_pred CCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEE
Q psy14540 121 GDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNL 196 (291)
Q Consensus 121 g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~ 196 (291)
|+.+.|.|.+ .|.|.|.+.|++++..+....++.+.. ...|.|.++..+|.|.|+|.|.|..|.......|
T Consensus 1 G~~~~l~C~~-~g~P~p~v~W~k~~~~l~~~~r~~~~~----~g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l 71 (73)
T cd05852 1 GGRVIIECKP-KAAPKPKFSWSKGTELLVNNSRISIWD----DGSLEILNITKLDEGSYTCFAENNRGKANSTGVL 71 (73)
T ss_pred CCeEEEEEec-ceeCCCEEEEEeCCEecccCCCEEEcC----CCEEEECcCChhHCEEEEEEEECCCCceeEEEEE
Confidence 6789999999 689999999999998876655555432 2358888888888888888888877776666554
No 66
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.54 E-value=7e-14 Score=84.22 Aligned_cols=72 Identities=24% Similarity=0.315 Sum_probs=49.4
Q ss_pred eEEEEEeeCCCCCceeEEeECCEeccCC-CceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEE
Q psy14540 124 AGVQCLVTKGDPPLTISWLKNGLPILSD-AEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNL 196 (291)
Q Consensus 124 ~~l~C~~~~~~p~~~~~W~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~ 196 (291)
+.|.|.+ .|.|.|.+.|++++..+... .+........+...|.|..++.+|.|.|+|.+.|..|.......+
T Consensus 1 v~L~C~v-~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 73 (75)
T cd05744 1 VRLECRV-SAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARL 73 (75)
T ss_pred CEEEEEE-eecCCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEE
Confidence 4799999 79999999999999988643 333333333334457777777777777777777766665554443
No 67
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.54 E-value=3.8e-14 Score=85.03 Aligned_cols=71 Identities=20% Similarity=0.298 Sum_probs=45.6
Q ss_pred eEEEEEeeCCCCCceeEEeECCEeccCC-CceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceE
Q psy14540 124 AGVQCLVTKGDPPLTISWLKNGLPILSD-AEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSN 195 (291)
Q Consensus 124 ~~l~C~~~~~~p~~~~~W~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~ 195 (291)
+.|.|.+ .|.|.|.+.|++++..+... .+......+.+...|.|..+..+|+|.|+|.|.|..|.......
T Consensus 1 v~l~C~v-~G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~ 72 (75)
T cd05893 1 VRLECRV-SGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTAR 72 (75)
T ss_pred CEEEEEE-eEecCCEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEE
Confidence 5799999 79999999999999988643 23333322222334666666666666666666665555444433
No 68
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=99.54 E-value=1.6e-13 Score=86.18 Aligned_cols=86 Identities=27% Similarity=0.478 Sum_probs=64.3
Q ss_pred ceeecceeeeecCCcEEEEEEecCCCCCeeEEEE-CCeecCC-CeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEe
Q psy14540 5 LIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKL-DGYPLAG-DRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTAT 82 (291)
Q Consensus 5 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~-~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~ 82 (291)
+.+.|....+..|+++.|.|.+.+.|. .+.|++ ++..+.. .+.. ....+...++|+|.+++.+|+|.|+|.+.
T Consensus 3 v~v~p~~~~v~~G~~~~l~C~~~G~p~-~i~W~~~~~~~~~~~~~~~----~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~ 77 (92)
T cd04977 3 VDIVPSQGEISVGESKFFLCQVIGEPK-DISWFSPNGEKLVTQQQIS----VVQNDDVRSTLTIYNANIEDAGIYKCVAT 77 (92)
T ss_pred EEEecCcEEECCCCeEEEEEEeEeeCC-eEEEECCCCCEeccCCCEE----EEeCCCCEEEEEEecCCcccCEEEEEEEE
Confidence 456788889999999999999998764 899998 5655442 2221 12234456789999999999999999999
Q ss_pred CCCC-ceeeeeeEE
Q psy14540 83 NRVG-SQTHSADMR 95 (291)
Q Consensus 83 ~~~~-~~~~~~~l~ 95 (291)
|..| ....++.|.
T Consensus 78 N~~g~~~~~sv~l~ 91 (92)
T cd04977 78 DAKGTESEATVNLK 91 (92)
T ss_pred cCCCCcceeEEEEE
Confidence 8754 345555554
No 69
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.54 E-value=1e-13 Score=86.23 Aligned_cols=75 Identities=29% Similarity=0.464 Sum_probs=45.5
Q ss_pred eeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCC
Q psy14540 116 IKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDN 191 (291)
Q Consensus 116 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~ 191 (291)
..+.+|+.+.|.|.+ .|.|.+.+.|+++|..+.................|.|..+...|.|.|+|.+.|..|...
T Consensus 4 ~~v~~G~~~~L~C~~-~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~ 78 (85)
T cd05857 4 HAVPAANTVKFRCPA-AGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSIN 78 (85)
T ss_pred EEcCCCCEEEEEEEc-CCCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEEE
Confidence 457789999999999 788999999999999886543321110001122344444444444444444444444433
No 70
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.53 E-value=2.4e-13 Score=85.29 Aligned_cols=80 Identities=23% Similarity=0.424 Sum_probs=52.5
Q ss_pred CcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCC
Q psy14540 113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNH 192 (291)
Q Consensus 113 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~ 192 (291)
+....+.+|+.+.|.|.+ .|.|.|.+.|++++..+......... .......|.|..+...|.|.|+|.|.|..|....
T Consensus 7 p~~~~v~~G~~v~l~C~~-~G~P~p~v~W~~~g~~~~~~~~~~~~-~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~~ 84 (90)
T cd04972 7 PNATVVYEGGTATIRCTA-EGSPLPKVEWIIAGLIVIQTRTDTLE-TTVDIYNLQLSNITSETQTTVTCTAENPVGQANV 84 (90)
T ss_pred CcCEEEcCCCcEEEEEEE-EEcCCCeEEEEECCEEccCCccEEEE-ecCCEEEEEEecCCcccCEEEEEEEECCCCceeE
Confidence 344568899999999999 69999999999999887543332111 1122345666666666666666666665555444
Q ss_pred ce
Q psy14540 193 SS 194 (291)
Q Consensus 193 ~~ 194 (291)
..
T Consensus 85 ~~ 86 (90)
T cd04972 85 SV 86 (90)
T ss_pred EE
Confidence 43
No 71
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.52 E-value=4.4e-14 Score=82.18 Aligned_cols=61 Identities=26% Similarity=0.379 Sum_probs=41.4
Q ss_pred eEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCce
Q psy14540 124 AGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSS 194 (291)
Q Consensus 124 ~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~ 194 (291)
+.|.|.+ .|.|.|.+.|+|+|.++... .....|.|..+..+|+|.|+|.|+|..|....+.
T Consensus 1 ~~l~c~v-~g~P~P~v~W~kdg~~l~~~---------~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~ 61 (67)
T cd05863 1 VKLPVKV-AAYPPPEFQWYKDGKLISGK---------HSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRI 61 (67)
T ss_pred CEEEEEE-EEeCCCEEEEEECCEECccc---------CCcCEEEECCCCHHHCEEEEEEEEECCccEEEEE
Confidence 4799999 79999999999999988521 1133566666666666666666666555444333
No 72
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.52 E-value=1.2e-13 Score=82.18 Aligned_cols=70 Identities=21% Similarity=0.324 Sum_probs=56.6
Q ss_pred EEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCceeeeeeEEEE
Q psy14540 20 VSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVY 97 (291)
Q Consensus 20 v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~l~v~ 97 (291)
+.|.|.+.+.|.+.+.|+|+|..+....... ....+|.|.+++.+|+|.|+|.+.|..|.....+.+.+.
T Consensus 1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~~~~~--------~~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~~ 70 (71)
T cd04976 1 VRLPVKVKAYPPPEIQWYKNGKLISEKNRTK--------KSGHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTLV 70 (71)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCCCEEE--------cCCCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEEE
Confidence 4799999999999999999999887432111 112569999999999999999999999888777777664
No 73
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.52 E-value=9.2e-14 Score=86.09 Aligned_cols=72 Identities=32% Similarity=0.573 Sum_probs=48.7
Q ss_pred CcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCC
Q psy14540 113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASD 190 (291)
Q Consensus 113 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~ 190 (291)
+....+..|+.+.|.|.+ .|.|.|.+.|++++..+....+.... ...|.|..+...|.|.|+|.|.|..|..
T Consensus 6 p~~~~~~~G~~~~l~C~~-~g~p~p~v~W~k~g~~~~~~~~~~~~-----~~~L~i~~~~~~D~G~Y~C~a~N~~G~~ 77 (85)
T cd05728 6 ISDTEADIGSSLRWECKA-SGNPRPAYRWLKNGQPLASENRIEVE-----AGDLRITKLSLSDSGMYQCVAENKHGTI 77 (85)
T ss_pred CCccEEcCCCcEEEEEEe-eEeCCCEEEEEECCEECCCCCeEEEe-----CCEEEEeeCCHHHCEEEEEEEECCCCeE
Confidence 445778899999999998 79999999999999987654433321 1235555555555555555555555443
No 74
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=99.52 E-value=4.6e-13 Score=82.54 Aligned_cols=81 Identities=22% Similarity=0.410 Sum_probs=57.7
Q ss_pred CCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCC--ceeeeeeE
Q psy14540 17 GPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVG--SQTHSADM 94 (291)
Q Consensus 17 g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~--~~~~~~~l 94 (291)
|++++|.|.+.+.|.+.+.|+++++....................+.|.|.+++.+|+|.|+|.+.+..+ ....++.+
T Consensus 1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~i 80 (84)
T cd05861 1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVNI 80 (84)
T ss_pred CCcEEEEEEEECCCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEEE
Confidence 7899999999998889999999776443111110011111233467899999999999999999997655 45666677
Q ss_pred EEE
Q psy14540 95 RVY 97 (291)
Q Consensus 95 ~v~ 97 (291)
+|.
T Consensus 81 ~V~ 83 (84)
T cd05861 81 TVH 83 (84)
T ss_pred EEe
Confidence 664
No 75
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.52 E-value=2.1e-13 Score=86.00 Aligned_cols=80 Identities=31% Similarity=0.526 Sum_probs=61.4
Q ss_pred CCcceeecceeeee---cCCcEEEEEEecCCCCCeeEEEECCeecCCC-eeEeceEEeeccceEEEEEEeecC-CCCCeE
Q psy14540 2 HPQLIYKFIQQTLQ---PGPPVSLKCIATGNPTPHISWKLDGYPLAGD-RFVMGQYMSLHGDVISHVNISSVR-VEDSGI 76 (291)
Q Consensus 2 ~p~~~~~~~~~~v~---~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~-~~d~G~ 76 (291)
.|.|+..|.+..+. +|+.++|.|.+.+.|.+.++|+++|..+... .... .... ..|.|.++. ..|+|.
T Consensus 1 ~P~f~~~p~~~~~~~~~~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~~~~~---~~~~----g~L~i~~~~~~~D~G~ 73 (94)
T cd05848 1 GPVFVQEPDDAIFPTDSDEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRY---SLID----GNLIISNPSEVKDSGR 73 (94)
T ss_pred CCeeEECCCcEEccCCCCCCEEEEEEEeeecCCCEEEEEECCeECccCCCceE---EeeC----CeEEEccCCccCcCEE
Confidence 37888889887664 4789999999999999999999999988622 1111 1111 347888874 689999
Q ss_pred EEEEEeCCCCce
Q psy14540 77 YQCTATNRVGSQ 88 (291)
Q Consensus 77 y~C~~~~~~~~~ 88 (291)
|+|.+.|..|..
T Consensus 74 Y~C~A~N~~G~~ 85 (94)
T cd05848 74 YQCLATNSIGSI 85 (94)
T ss_pred EEEEEEcCCCeE
Confidence 999999988865
No 76
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.51 E-value=1.1e-13 Score=84.21 Aligned_cols=75 Identities=31% Similarity=0.459 Sum_probs=59.5
Q ss_pred CCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCceeeeeeEEE
Q psy14540 17 GPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRV 96 (291)
Q Consensus 17 g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~l~v 96 (291)
|+.+.|.|.+.+.|.|.+.|++++..+....... ... .....|.|.+++.+|+|.|+|.+.|..|.....+.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~~--~~~---~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V 75 (76)
T cd04978 1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDP--RRR---VDGGTLILSNVQPNDTAVYQCNASNVHGYLLANAFVHV 75 (76)
T ss_pred CCeEEEEEEceeeCCCEEEEEECCEECCCCCCcc--eEE---ccCCEEEECCCChhhCEEEEEEEEccCCeEEEeEEEEE
Confidence 7899999999999999999999998876322111 011 11245899999999999999999999999888887776
No 77
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.51 E-value=1e-13 Score=87.38 Aligned_cols=75 Identities=39% Similarity=0.762 Sum_probs=51.8
Q ss_pred CcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCC
Q psy14540 113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVAS 189 (291)
Q Consensus 113 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 189 (291)
+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+....+....... ....|.|.++..+|.|.|+|.+.|..|.
T Consensus 7 ~~~~~v~~G~~~~l~c~~-~~~p~~~v~W~~~~~~l~~~~~~~~~~~~-~~~~L~I~~v~~~D~G~Y~C~~~n~~g~ 81 (90)
T PF07679_consen 7 PKDVTVKEGESVTLECEV-SGNPPPTVTWYKNGRPLTSSQRYQIESDG-GSSSLTIKNVTREDAGTYTCVASNSSGE 81 (90)
T ss_dssp SSEEEEETTSEEEEEEEE-EESSSSEEEEEETTEEEESSSSEEEEEET-TEEEEEESSESGGGSEEEEEEEEETTEE
T ss_pred cCCEEEeCCCEEEEEEEE-EeCCCCcccccccccceeeeeeeeeeccc-ceeEEccCCCChhhCEEEEEEEEECCCE
Confidence 456788999999999999 57799999999999999876666554433 3444555555555554444444444433
No 78
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.51 E-value=1.6e-13 Score=82.47 Aligned_cols=72 Identities=29% Similarity=0.521 Sum_probs=58.5
Q ss_pred CCcEEEEEEecCCCCCeeEEEECCeecC-CCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCceeeeeeEE
Q psy14540 17 GPPVSLKCIATGNPTPHISWKLDGYPLA-GDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMR 95 (291)
Q Consensus 17 g~~v~l~C~~~~~~~~~v~W~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~l~ 95 (291)
|+.+.|.|.+.+.|.+.+.|++++..+. ..+.... .. .+|.|.+++.+|+|.|+|.+.|..|.....+.|.
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~------~~--~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~ 72 (73)
T cd04969 1 GGDVIIECKPKAAPKPTISWSKGTELLTNSSRICIW------PD--GSLEILNVTKSDEGKYTCFAENFFGKANSTGSLS 72 (73)
T ss_pred CCeEEEEEeeeEcCCCEEEEEECCEEcccCCCEEEC------CC--CeEEEccCChhHCEEEEEEEECCCCceEEEEEEE
Confidence 7889999999999999999999998876 2232221 11 2499999999999999999999999888877765
Q ss_pred E
Q psy14540 96 V 96 (291)
Q Consensus 96 v 96 (291)
|
T Consensus 73 V 73 (73)
T cd04969 73 V 73 (73)
T ss_pred C
Confidence 4
No 79
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.51 E-value=3.3e-13 Score=82.24 Aligned_cols=75 Identities=17% Similarity=0.321 Sum_probs=56.1
Q ss_pred EEEEEecCCCCCeeEEEECCeecCCCee-EeceEEe--eccceEEEEEEeecCCCCCeEEEEEEeCCCCceeeeeeEE
Q psy14540 21 SLKCIATGNPTPHISWKLDGYPLAGDRF-VMGQYMS--LHGDVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMR 95 (291)
Q Consensus 21 ~l~C~~~~~~~~~v~W~~~~~~~~~~~~-~~~~~~~--~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~l~ 95 (291)
.|.|.+.+.|.|.++|+|+|..+..... ....... ........|.|.+++..|+|.|+|.+.|..|.....+.+.
T Consensus 2 ~i~~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 79 (81)
T cd04971 2 CIPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAH 79 (81)
T ss_pred eEEEEeEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEee
Confidence 3789999999999999999999874321 1111111 1123346799999999999999999999999888776654
No 80
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.51 E-value=3.5e-13 Score=85.55 Aligned_cols=86 Identities=34% Similarity=0.521 Sum_probs=62.4
Q ss_pred ceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeec-----CCCCCeEEEE
Q psy14540 5 LIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSV-----RVEDSGIYQC 79 (291)
Q Consensus 5 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~-----~~~d~G~y~C 79 (291)
|..+|.+..+.+|+++.|.|.+.+.|.+.+.|+|+|..+...... ......+ .+|.|.++ ...|+|.|+|
T Consensus 2 f~~~P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~--~~~~~~~---~~l~i~~v~~~~~~~~D~G~Y~C 76 (95)
T cd05722 2 FLSEPSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDE--RRQQLPN---GSLLITSVVHSKHNKPDEGFYQC 76 (95)
T ss_pred cEECCCCeEEcCCCCEEEeeecccCCCCEEEEEECCeECccccCc--ceEEccC---CeEEEeeeeccCCCCCcCEEEEE
Confidence 567888889999999999999999999999999999988732110 0011111 12455554 6889999999
Q ss_pred EEeCC-CCce-eeeeeEE
Q psy14540 80 TATNR-VGSQ-THSADMR 95 (291)
Q Consensus 80 ~~~~~-~~~~-~~~~~l~ 95 (291)
.+.|. .|.. ++.+.|.
T Consensus 77 ~a~N~~~G~~~s~~~~l~ 94 (95)
T cd05722 77 VAQNDSLGSIVSRTARLT 94 (95)
T ss_pred EEECCccCcEEEeeeEEe
Confidence 99998 7764 4455544
No 81
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.50 E-value=2.4e-13 Score=81.67 Aligned_cols=69 Identities=26% Similarity=0.436 Sum_probs=46.0
Q ss_pred EEEEeeCCCCCceeEEeECCEeccCCCceEE----eccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceE
Q psy14540 126 VQCLVTKGDPPLTISWLKNGLPILSDAEITI----RSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSN 195 (291)
Q Consensus 126 l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~----~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~ 195 (291)
|.|.+ .|.|.|+++|+|+|.++....+... .........|.|..+...|.|.|+|.|+|..|....++.
T Consensus 3 i~~~v-~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~ 75 (79)
T cd05855 3 IPFTV-KGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVS 75 (79)
T ss_pred EEEEE-eEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEE
Confidence 67888 7999999999999999976554321 111223445666666666666666666666665555443
No 82
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.50 E-value=4.6e-13 Score=84.49 Aligned_cols=82 Identities=26% Similarity=0.445 Sum_probs=61.9
Q ss_pred CCcceeecceeeeecC---CcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecC-CCCCeEE
Q psy14540 2 HPQLIYKFIQQTLQPG---PPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVR-VEDSGIY 77 (291)
Q Consensus 2 ~p~~~~~~~~~~v~~g---~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~G~y 77 (291)
.|.|...|.+..+.+| ++++|.|.+.+.|.+.++|+++|..+...... ...... ..|.|.+.. ..|+|.|
T Consensus 1 ~P~f~~~P~~~~~~~~~~g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~--~~~~~~----g~L~I~~~~~~~D~G~Y 74 (94)
T cd05850 1 GPVFEEQPSSLLFPEGSPEEKVTLGCRARASPPATYRWKMNGTEIKFAPES--RYTLVA----GNLVINNPQKARDAGSY 74 (94)
T ss_pred CCeeEECCCCEEecCCCCCCeEEEEeEceeCCCCEEEEEECCEECccCCCc--eEEEEC----CeEEEccCCccCcCEEE
Confidence 4788999998887776 57999999999999999999999988622100 011111 347787755 5899999
Q ss_pred EEEEeCCCCcee
Q psy14540 78 QCTATNRVGSQT 89 (291)
Q Consensus 78 ~C~~~~~~~~~~ 89 (291)
+|.+.|..|...
T Consensus 75 ~C~A~N~~G~~~ 86 (94)
T cd05850 75 QCLAINRCGTVV 86 (94)
T ss_pred EEEEEcCcCcEE
Confidence 999999988754
No 83
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.50 E-value=2.5e-13 Score=80.98 Aligned_cols=70 Identities=31% Similarity=0.587 Sum_probs=55.4
Q ss_pred cEEEEEEecCCCCCeeEEEECCeecCC-CeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCceeeeeeEEE
Q psy14540 19 PVSLKCIATGNPTPHISWKLDGYPLAG-DRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRV 96 (291)
Q Consensus 19 ~v~l~C~~~~~~~~~v~W~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~l~v 96 (291)
++.|.|.+.|.|.|.++|+|++..+.. .++... .. ..|.|.+++.+|+|.|+|.+.|..|.....+.|.|
T Consensus 1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~~~~~~~----~~----~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 71 (71)
T cd05723 1 DVIFECEVTGKPTPTVKWVKNGDMVIPSDYFKIV----KE----HNLQVLGLVKSDEGFYQCIAENDVGNVQASAQLII 71 (71)
T ss_pred CEEEEEEEEEeCCCEEEEEECCeECCCCCCEEEE----ec----CCEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence 478999999999999999999987763 222221 11 23678899999999999999999999888877654
No 84
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.50 E-value=3e-13 Score=84.88 Aligned_cols=79 Identities=27% Similarity=0.489 Sum_probs=61.6
Q ss_pred CCcceeecceeeeecCC---cEEEEEEecCCCCCeeEEEECCeecCC--CeeEeceEEeeccceEEEEEEeecC-CCCCe
Q psy14540 2 HPQLIYKFIQQTLQPGP---PVSLKCIATGNPTPHISWKLDGYPLAG--DRFVMGQYMSLHGDVISHVNISSVR-VEDSG 75 (291)
Q Consensus 2 ~p~~~~~~~~~~v~~g~---~v~l~C~~~~~~~~~v~W~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~G 75 (291)
.|.|+..|.+..+.++. .+.|.|.+.|.|.+.++|++++..+.. .++.. . + ..|.|.++. ..|+|
T Consensus 1 ~P~f~~~P~~~~~~~~~~~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~~~~~~-----~-~---g~L~I~~~~~~~D~G 71 (93)
T cd05849 1 GPVFEEQPIDTIYPEESTEGKVSVNCRARANPFPIYKWRKNNLDIDLTNDRYSM-----V-G---GNLVINNPDKYKDAG 71 (93)
T ss_pred CCEEEECCCCEEecCCccCCeEEEeCcCccCCCCEEEEEECCEEccCCCCeEEE-----E-C---CEEEECcCCcCCCCE
Confidence 48888888887666654 799999999999999999999988752 22211 1 1 358898875 68999
Q ss_pred EEEEEEeCCCCcee
Q psy14540 76 IYQCTATNRVGSQT 89 (291)
Q Consensus 76 ~y~C~~~~~~~~~~ 89 (291)
.|+|.+.|..|...
T Consensus 72 ~Y~C~A~N~~G~~~ 85 (93)
T cd05849 72 RYVCIVSNIYGKVR 85 (93)
T ss_pred EEEEEEEeCcceEE
Confidence 99999999888653
No 85
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.50 E-value=1.7e-13 Score=80.84 Aligned_cols=69 Identities=20% Similarity=0.361 Sum_probs=55.0
Q ss_pred EEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCceeeeeeEEEE
Q psy14540 20 VSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVY 97 (291)
Q Consensus 20 v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~l~v~ 97 (291)
+.|.|.+.+.|.|.+.|+|+|..+..... . .. ...|.|.+++.+|+|.|+|.+.|..|.......+.+.
T Consensus 1 ~~~~c~v~G~P~P~v~W~k~g~~l~~~~~-~-----~~---~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l~ 69 (70)
T cd05864 1 VKIPVKYYGYPPPEVKWYKNGQLIVLNHT-F-----KR---GVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQLV 69 (70)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCCCE-E-----cc---CCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEEE
Confidence 46899999999999999999999874321 1 11 1359999999999999999999999877766666553
No 86
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.49 E-value=3.2e-13 Score=82.20 Aligned_cols=72 Identities=32% Similarity=0.556 Sum_probs=56.5
Q ss_pred CCcEEEEEEecCCCCCeeEEEECCeecCC-CeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCceeeeee
Q psy14540 17 GPPVSLKCIATGNPTPHISWKLDGYPLAG-DRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQTHSAD 93 (291)
Q Consensus 17 g~~v~l~C~~~~~~~~~v~W~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~ 93 (291)
|+++.|.|.+.+.|.|.+.|++++..+.. .++.. ........|.|.+++.+|+|.|+|.+.|..|.......
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~-----~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~ 73 (78)
T cd05743 1 GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSI-----TSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGIPD 73 (78)
T ss_pred CCEEEEEEEEEEecCCEEEEEECCeECCCCCCEEE-----EECCCEEEEEECCCChHHCEEEEEEEEecCCEEEeccc
Confidence 78999999999999999999999887763 23222 12233467999999999999999999998887655443
No 87
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=99.49 E-value=2.7e-13 Score=83.83 Aligned_cols=79 Identities=32% Similarity=0.575 Sum_probs=61.4
Q ss_pred eeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCceeee
Q psy14540 12 QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQTHS 91 (291)
Q Consensus 12 ~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~ 91 (291)
..+..|+++.|.|.+.+.|.+.+.|++++..+....... .......|.|.+++.+|+|.|+|.+.|..|.....
T Consensus 4 ~~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~~------~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~ 77 (82)
T cd05856 4 IARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGE------SRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINAT 77 (82)
T ss_pred eeccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCccce------ecCceEEEEEccCChhhCEEEEEEEEcCCccEEEE
Confidence 346789999999999998899999999998765322111 11223679999999999999999999999887777
Q ss_pred eeEEE
Q psy14540 92 ADMRV 96 (291)
Q Consensus 92 ~~l~v 96 (291)
+.|.|
T Consensus 78 ~~v~v 82 (82)
T cd05856 78 YKVDV 82 (82)
T ss_pred EEEeC
Confidence 66543
No 88
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.49 E-value=4e-13 Score=83.83 Aligned_cols=79 Identities=33% Similarity=0.623 Sum_probs=60.9
Q ss_pred ecceeeeecCCcEEEEEEe-cCCCCCeeEEEECCeecCCC--eeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCC
Q psy14540 8 KFIQQTLQPGPPVSLKCIA-TGNPTPHISWKLDGYPLAGD--RFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNR 84 (291)
Q Consensus 8 ~~~~~~v~~g~~v~l~C~~-~~~~~~~v~W~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~ 84 (291)
.|....+.+|+++.|.|.+ .+.|.+.+.|++++..+... +... . . ...|.|.+++.+|+|.|+|.+.|.
T Consensus 2 ~p~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~-----~-~--~~~L~I~~~~~~D~G~Y~C~a~N~ 73 (86)
T cd05724 2 EPSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRI-----V-D--DGNLLIAEARKSDEGTYKCVATNM 73 (86)
T ss_pred CCccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEE-----c-c--CCEEEEeECCcccCEEEEEEEEec
Confidence 4677889999999999998 67889999999999887632 1111 1 1 135999999999999999999998
Q ss_pred CCce-eeeeeE
Q psy14540 85 VGSQ-THSADM 94 (291)
Q Consensus 85 ~~~~-~~~~~l 94 (291)
.|.. +..+.|
T Consensus 74 ~G~~~s~~~~l 84 (86)
T cd05724 74 VGERESAAARL 84 (86)
T ss_pred cCceeeeeEEE
Confidence 8764 334433
No 89
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.49 E-value=2.9e-13 Score=84.99 Aligned_cols=83 Identities=20% Similarity=0.263 Sum_probs=61.6
Q ss_pred ceeeeecCCcEEEEEEecC-----CCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCC
Q psy14540 10 IQQTLQPGPPVSLKCIATG-----NPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNR 84 (291)
Q Consensus 10 ~~~~v~~g~~v~l~C~~~~-----~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~ 84 (291)
....+.+|+.+.|.|.+.+ .|.+.|.|||++..+........ +.... ...|.|.+++.+|+|.|+|.+.|.
T Consensus 7 ~~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~-r~~~~---~~~L~I~~~~~~DsG~Y~C~~~N~ 82 (94)
T cd05756 7 KKSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERS-RMHQQ---KDLLWFLPAALEDSGLYTCVVRNS 82 (94)
T ss_pred eEEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccc-eeeec---CCeEEEccCCcccCeEEEEEEcCC
Confidence 4567889999999999988 57889999999876432110001 11111 145899999999999999999999
Q ss_pred CCceeeeeeEEE
Q psy14540 85 VGSQTHSADMRV 96 (291)
Q Consensus 85 ~~~~~~~~~l~v 96 (291)
.|.....+.|.|
T Consensus 83 ~g~~~~~~~L~v 94 (94)
T cd05756 83 TYCMKVSISLTV 94 (94)
T ss_pred CccEEEEEEEEC
Confidence 888887776654
No 90
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.49 E-value=2.2e-13 Score=81.21 Aligned_cols=70 Identities=36% Similarity=0.588 Sum_probs=55.8
Q ss_pred EEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCceeeeeeEEE
Q psy14540 20 VSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRV 96 (291)
Q Consensus 20 v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~l~v 96 (291)
+.|.|.+.|.|.|.+.|++++..+....... . ....+|.|.+++.+|+|.|+|.+.|..|.....+.|.|
T Consensus 1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~~~~~-----~--~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05876 1 LVLECIAEGLPTPEVHWDRIDGPLSPNRTKK-----L--NNNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTV 70 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCcCCCCCceeE-----E--cCCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEE
Confidence 4799999999999999999987765332211 1 11246999999999999999999999998888777765
No 91
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.48 E-value=2.9e-13 Score=80.72 Aligned_cols=69 Identities=29% Similarity=0.531 Sum_probs=49.2
Q ss_pred ceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEE
Q psy14540 123 RAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNL 196 (291)
Q Consensus 123 ~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~ 196 (291)
.+.|.|.+ .|.|.|.++|++++..+....+...... ..|.+..+..+|.|.|+|.|.|..|.......+
T Consensus 1 ~v~l~C~~-~G~P~p~v~W~k~g~~~~~~~~~~~~~~----~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L 69 (71)
T cd05723 1 DVIFECEV-TGKPTPTVKWVKNGDMVIPSDYFKIVKE----HNLQVLGLVKSDEGFYQCIAENDVGNVQASAQL 69 (71)
T ss_pred CEEEEEEE-EEeCCCEEEEEECCeECCCCCCEEEEec----CCEEEEcCCcccCEEEEEEEEcCCCEEEEEEEE
Confidence 47899999 6999999999999988866555443322 236666777777777777777777665555443
No 92
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.48 E-value=4.4e-13 Score=81.71 Aligned_cols=74 Identities=27% Similarity=0.488 Sum_probs=52.7
Q ss_pred ceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCce
Q psy14540 115 SIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSS 194 (291)
Q Consensus 115 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~ 194 (291)
...+.+|+.+.|.|.+ .+. .+.+.|+++|.++....+.... ...|.|..+..+|+|.|+|.+.|..|.....+
T Consensus 3 ~~~~~~G~~v~l~C~~-~~~-~~~v~W~k~g~~l~~~~~~~~~-----~~~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~ 75 (79)
T cd04973 3 SYSAHPGDLLQLRCRL-RDD-VQSINWTKDGVQLGENNRTRIT-----GEEVQIKDAVPRDSGLYACVTSSPSGSDTTYF 75 (79)
T ss_pred cEEecCCCCEEEEEEe-cCC-CceEEEeeCCcCCCCCceEEEe-----CCEEEECCCChhhCEEEEEEEeCCCCcccEEE
Confidence 4678899999999998 454 5689999999988665544332 23577777777777777777777666554444
Q ss_pred E
Q psy14540 195 N 195 (291)
Q Consensus 195 ~ 195 (291)
.
T Consensus 76 ~ 76 (79)
T cd04973 76 S 76 (79)
T ss_pred E
Confidence 3
No 93
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.48 E-value=4.4e-13 Score=80.87 Aligned_cols=70 Identities=23% Similarity=0.451 Sum_probs=46.2
Q ss_pred ceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCce
Q psy14540 123 RAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSS 194 (291)
Q Consensus 123 ~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~ 194 (291)
.+.|.|.+ .|.|.|.+.|+++|..+....+..+... .....|.|..+..+|.|.|+|.|.|..|.....+
T Consensus 1 ~~~l~c~~-~G~P~p~v~W~k~g~~l~~~~~~~~~~~-~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~ 70 (74)
T cd05748 1 SVRLEVPI-SGRPTPTVTWSKDGKPLKLSGRVQIETT-ASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATI 70 (74)
T ss_pred CEEEEeeE-eeeCCCeEEEEECCEEcCCCCeEEEEEC-CCeEEEEECCCCcCcCEEEEEEEECCCccEEEEE
Confidence 36899999 7999999999999998865544443322 2244566666666666666666666555544443
No 94
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=99.48 E-value=4.5e-13 Score=81.41 Aligned_cols=73 Identities=26% Similarity=0.489 Sum_probs=58.0
Q ss_pred ceeecceeeeecCCcEEEEEEecCCCCC-eeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeC
Q psy14540 5 LIYKFIQQTLQPGPPVSLKCIATGNPTP-HISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATN 83 (291)
Q Consensus 5 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~ 83 (291)
|...|.++.+.+|+++.|.|.+.|.|.| .|.|+++|..+... .. ...+.|.|.++ .|+|.|.|.+.|
T Consensus 1 f~~~P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~-~~---------~~~s~L~i~~~--~d~g~Y~C~A~N 68 (81)
T cd05749 1 FTVEPEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGDP-PA---------PSPSVLNVPGL--NETSKFSCEAHN 68 (81)
T ss_pred CcCCCCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCCC-CC---------CCCCEEEEccc--cCCeEEEEEEEe
Confidence 4667888999999999999999999999 79999999987631 00 11135778776 588999999999
Q ss_pred CCCcee
Q psy14540 84 RVGSQT 89 (291)
Q Consensus 84 ~~~~~~ 89 (291)
..|...
T Consensus 69 ~~G~~~ 74 (81)
T cd05749 69 AKGVTT 74 (81)
T ss_pred ccCcEE
Confidence 888643
No 95
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.48 E-value=4.6e-13 Score=81.54 Aligned_cols=72 Identities=26% Similarity=0.387 Sum_probs=52.2
Q ss_pred CCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCce
Q psy14540 121 GDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSS 194 (291)
Q Consensus 121 g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~ 194 (291)
|+.+.|.|.+ .|.|.|.+.|++++..+....+...... .....|.|.++..+|.|.|+|.+.|..|......
T Consensus 1 G~~v~l~C~~-~g~P~p~v~W~~~~~~~~~~~~~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~ 72 (78)
T cd05743 1 GETVEFTCVA-TGVPTPIINWRLNWGHVPDSARVSITSE-GGYGTLTIRDVKESDQGAYTCEAINTRGMVFGIP 72 (78)
T ss_pred CCEEEEEEEE-EEecCCEEEEEECCeECCCCCCEEEEEC-CCEEEEEECCCChHHCEEEEEEEEecCCEEEecc
Confidence 6789999999 6999999999999988766555443322 2245677777777777777777777776554443
No 96
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.48 E-value=3.5e-13 Score=85.63 Aligned_cols=36 Identities=31% Similarity=0.575 Sum_probs=31.1
Q ss_pred ceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCC
Q psy14540 115 SIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSD 151 (291)
Q Consensus 115 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~ 151 (291)
...+..|+.+.|.|.+ .|.|.+.+.|+++|..+...
T Consensus 12 ~~~~~~G~~v~L~C~~-~g~P~p~v~W~k~g~~~~~~ 47 (95)
T cd05730 12 NATANLGQSVTLACDA-DGFPEPTMTWTKDGEPIESG 47 (95)
T ss_pred ceEEeCCCCEEEEEec-cEeCCCEEEEEECCEECcCC
Confidence 4577899999999999 79999999999999887543
No 97
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.48 E-value=5.3e-13 Score=81.40 Aligned_cols=81 Identities=21% Similarity=0.400 Sum_probs=57.9
Q ss_pred CceEEEEEeeC-CCCCceeEEeECCEeccCCC---ceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEE
Q psy14540 122 DRAGVQCLVTK-GDPPLTISWLKNGLPILSDA---EITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLR 197 (291)
Q Consensus 122 ~~~~l~C~~~~-~~p~~~~~W~~~~~~~~~~~---~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~ 197 (291)
+++.|.|.+.. +.+.+.|.|++||.++.... ++.....
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~-------------------------------------- 42 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGG-------------------------------------- 42 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEecc--------------------------------------
Confidence 36789999843 45578999999999985211 1110000
Q ss_pred EeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCC
Q psy14540 198 VNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPP 241 (291)
Q Consensus 198 ~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p 241 (291)
....+.|.|.+++..|+|.|+|.|.|..+..+++..|.|..||
T Consensus 43 -~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~V~~pP 85 (85)
T cd05853 43 -QDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLIVRGPP 85 (85)
T ss_pred -CCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEEEEEecCC
Confidence 0113468888888888889999999988888888888888776
No 98
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.48 E-value=3.3e-13 Score=81.75 Aligned_cols=72 Identities=24% Similarity=0.427 Sum_probs=50.4
Q ss_pred CCceEEEEEeeCCCCCceeEEeECCEeccCCCce-EEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEE
Q psy14540 121 GDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEI-TIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNL 196 (291)
Q Consensus 121 g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~-~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~ 196 (291)
|+.+.|.|.+ .|.|.|.++|+++|.++...... .... ....|.|.++..+|+|.|+|.+.|..|.....+.+
T Consensus 1 G~~v~l~C~~-~G~P~p~i~W~k~g~~i~~~~~~~~~~~---~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 73 (76)
T cd05867 1 GETARLDCQV-EGIPTPNITWSINGAPIEGTDPDPRRHV---SSGALILTDVQPSDTAVYQCEARNRHGNLLANAHV 73 (76)
T ss_pred CCeEEEEEEe-eEeCCCeEEEEECCEECCCCCCCceEEe---eCCEEEECCCChhhCEEEEEEEECCCCeEEEEEEE
Confidence 6789999999 79999999999999987653221 1111 12357777777777777777777777665555444
No 99
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.47 E-value=5.1e-13 Score=83.52 Aligned_cols=76 Identities=26% Similarity=0.468 Sum_probs=49.7
Q ss_pred CcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCC
Q psy14540 113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNH 192 (291)
Q Consensus 113 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~ 192 (291)
+....+.+|+.+.|.|.+ .|.|.+.+.|++++..+....... .....|.|.+++.+|+|.|+|.+.|..|....
T Consensus 8 p~~~~~~~g~~v~l~C~~-~g~P~p~v~W~k~~~~~~~~~~~~-----~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~ 81 (88)
T cd04968 8 PKDTYALKGQNVTLECFA-LGNPVPQIKWRKVDGSMPSSAEIS-----MSGAVLKIPNIQFEDEGTYECEAENIKGKDTH 81 (88)
T ss_pred CCceEEeCCCcEEEEEEe-eEeCCCEEEEEECCCcCCCccEEE-----EeCCEEEECCCCcccCEEEEEEEEECCCcEEE
Confidence 345677899999999999 799999999999887654332211 11234566666666666666666555555444
Q ss_pred ce
Q psy14540 193 SS 194 (291)
Q Consensus 193 ~~ 194 (291)
..
T Consensus 82 ~~ 83 (88)
T cd04968 82 QG 83 (88)
T ss_pred EE
Confidence 33
No 100
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.47 E-value=2.7e-13 Score=81.95 Aligned_cols=72 Identities=26% Similarity=0.427 Sum_probs=44.3
Q ss_pred CCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceE
Q psy14540 121 GDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSN 195 (291)
Q Consensus 121 g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~ 195 (291)
|+.+.|.|.+ .|.|.|.++|+++|.++........... ....|.+..+...|.|.|+|.|.|..|....+..
T Consensus 1 g~~~~l~C~a-~G~P~P~i~W~k~g~~i~~~~~~~~~~~--~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~ 72 (76)
T cd05868 1 GEDGTLICRA-NGNPKPSISWLTNGVPIEIAPTDPSRKV--DGDTIIFSKVQERSSAVYQCNASNEYGYLLANAF 72 (76)
T ss_pred CCCEEEEEEe-eEeCCCeEEEEECCEEccccCCCceEEe--cCCEEEECCCCHhhCEEEEEEEEcCCCEEEEEEE
Confidence 6789999999 7999999999999998854321110000 0124555555555555555555555554444433
No 101
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=99.47 E-value=5.1e-13 Score=83.77 Aligned_cols=80 Identities=28% Similarity=0.471 Sum_probs=58.2
Q ss_pred CCcEEEEEEecCCCCCeeEEEEC----CeecCCC-e--eEece--EEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCc
Q psy14540 17 GPPVSLKCIATGNPTPHISWKLD----GYPLAGD-R--FVMGQ--YMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGS 87 (291)
Q Consensus 17 g~~v~l~C~~~~~~~~~v~W~~~----~~~~~~~-~--~~~~~--~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~ 87 (291)
|+.+.|.|.+.+.|.|.++|+++ +..+... . ..... .........+.|.|.+++.+|+|.|+|.+.|..|.
T Consensus 1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd05858 1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIGI 80 (90)
T ss_pred CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCCc
Confidence 78999999999999999999984 3333311 1 11000 00111123367999999999999999999999999
Q ss_pred eeeeeeEEE
Q psy14540 88 QTHSADMRV 96 (291)
Q Consensus 88 ~~~~~~l~v 96 (291)
...+..|.|
T Consensus 81 ~~~~a~L~V 89 (90)
T cd05858 81 SHHSAWLTV 89 (90)
T ss_pred ccceEEEEE
Confidence 888888876
No 102
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=99.47 E-value=5.5e-13 Score=82.54 Aligned_cols=80 Identities=21% Similarity=0.409 Sum_probs=59.3
Q ss_pred CCcEEEEEEecCC--CCCeeEEEECCeecCCCeeEe-ceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCceeeeee
Q psy14540 17 GPPVSLKCIATGN--PTPHISWKLDGYPLAGDRFVM-GQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQTHSAD 93 (291)
Q Consensus 17 g~~v~l~C~~~~~--~~~~v~W~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~ 93 (291)
|+.+.|.|.+.+. |.+.+.|++++..+....... ...........+.|.|.+++.+|+|.|+|.+.+..+....+..
T Consensus 1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~ 80 (84)
T cd05742 1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKESTK 80 (84)
T ss_pred CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEEEE
Confidence 7899999999987 788999999877654221110 0111112234578999999999999999999998888887777
Q ss_pred EEE
Q psy14540 94 MRV 96 (291)
Q Consensus 94 l~v 96 (291)
+.|
T Consensus 81 v~v 83 (84)
T cd05742 81 VNI 83 (84)
T ss_pred EEE
Confidence 665
No 103
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.47 E-value=1e-12 Score=81.73 Aligned_cols=85 Identities=26% Similarity=0.494 Sum_probs=59.9
Q ss_pred CCceEEEEEeeCCCCCceeEEeECCEeccCCC-ceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEe
Q psy14540 121 GDRAGVQCLVTKGDPPLTISWLKNGLPILSDA-EITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVN 199 (291)
Q Consensus 121 g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~ 199 (291)
|+.+.|.|.+ .|.|.+.+.|++++..+.... ++.+.... ..+
T Consensus 1 g~~~~l~C~~-~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~------------~~~------------------------ 43 (88)
T cd05735 1 GQKKEMSCTA-HGEKPIIVRWEKEDRIINPEMSRYLVSTKE------------VGD------------------------ 43 (88)
T ss_pred CCeEEEEEEE-ECCCCCEEEEeeCCEECCCCCCcEEEEEec------------CCC------------------------
Confidence 7889999999 688999999999998775432 22111100 000
Q ss_pred ccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCCC
Q psy14540 200 EYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPH 242 (291)
Q Consensus 200 ~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p~ 242 (291)
...+.|.|.++..+|+|.|+|.|.|..|.....+.|.|..+|.
T Consensus 44 ~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L~V~~~P~ 86 (88)
T cd05735 44 EVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQLTVQEPPD 86 (88)
T ss_pred cEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEEEEEeCCCC
Confidence 0134677788888888888888888888888888888877664
No 104
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.47 E-value=3.9e-13 Score=80.78 Aligned_cols=71 Identities=31% Similarity=0.518 Sum_probs=54.6
Q ss_pred CCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEE
Q psy14540 121 GDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNL 196 (291)
Q Consensus 121 g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~ 196 (291)
|+.+.|.|.+ .|.|.+.+.|++++..+....+..... ...|.|.++..+|.|.|+|.+.|..|.......+
T Consensus 1 G~~v~L~C~~-~g~P~p~v~W~k~~~~~~~~~~~~~~~----~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l 71 (73)
T cd04969 1 GGDVIIECKP-KAAPKPTISWSKGTELLTNSSRICIWP----DGSLEILNVTKSDEGKYTCFAENFFGKANSTGSL 71 (73)
T ss_pred CCeEEEEEee-eEcCCCEEEEEECCEEcccCCCEEECC----CCeEEEccCChhHCEEEEEEEECCCCceEEEEEE
Confidence 6789999998 789999999999999887665554432 2358888888888888888888877776655544
No 105
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.47 E-value=5.6e-13 Score=80.83 Aligned_cols=73 Identities=29% Similarity=0.525 Sum_probs=53.6
Q ss_pred EEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCcee--eeeeEEEE
Q psy14540 20 VSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQT--HSADMRVY 97 (291)
Q Consensus 20 v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~--~~~~l~v~ 97 (291)
++|.|.+.+.|.|.+.|+|+|..+....... .... ....|.|.+++.+|+|.|.|.+.|..|... ..+.|.|.
T Consensus 1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~---~~~~--~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~v~ 75 (77)
T cd05760 1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNY---SVSS--KERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLSII 75 (77)
T ss_pred CEEEEEeeecCCCcEEEEECCEECCCCCccE---EEeC--CCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEEEe
Confidence 5799999999999999999999876322111 0111 123699999999999999999999888754 34455443
No 106
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=99.47 E-value=7.3e-13 Score=78.18 Aligned_cols=68 Identities=25% Similarity=0.504 Sum_probs=52.4
Q ss_pred CCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCceeeeeeE
Q psy14540 17 GPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADM 94 (291)
Q Consensus 17 g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~l 94 (291)
|++++|.|.+.+.|.|.|.|+|++..+....... . ....|.|.++ .|+|.|+|.+.|..|....+..|
T Consensus 1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~~~~~------~--~~~~L~i~~~--~d~G~Y~C~A~N~~G~~~~~a~l 68 (69)
T cd05739 1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKEDEMP------V--GRNVLELTNI--YESANYTCVAISSLGMIEATAQV 68 (69)
T ss_pred CCeEEEEEEeeecCCCEEEEEECCEECCCcccee------c--CccEEEEecc--ccCeeEEEEEEeCCCEEEEEEEE
Confidence 7889999999999999999999998876322110 1 1235888886 48999999999999987766554
No 107
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.47 E-value=7e-13 Score=83.03 Aligned_cols=80 Identities=25% Similarity=0.473 Sum_probs=57.4
Q ss_pred CCcEEEEEEecCCCCCeeEEEECC----eecCCC--ee-EeceE--EeeccceEEEEEEeecCCCCCeEEEEEEeCCCCc
Q psy14540 17 GPPVSLKCIATGNPTPHISWKLDG----YPLAGD--RF-VMGQY--MSLHGDVISHVNISSVRVEDSGIYQCTATNRVGS 87 (291)
Q Consensus 17 g~~v~l~C~~~~~~~~~v~W~~~~----~~~~~~--~~-~~~~~--~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~ 87 (291)
|+.++|.|.+.+.|.|.|+|+|++ ..+... .. ..... ..........|.|.+++.+|+|.|+|.+.|..|.
T Consensus 1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd04974 1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIGP 80 (90)
T ss_pred CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccCc
Confidence 788999999999999999999964 222211 10 00000 0011122356999999999999999999999999
Q ss_pred eeeeeeEEE
Q psy14540 88 QTHSADMRV 96 (291)
Q Consensus 88 ~~~~~~l~v 96 (291)
...++.|.|
T Consensus 81 ~~~sa~L~V 89 (90)
T cd04974 81 SHHSAWLTV 89 (90)
T ss_pred ccCCEEEEe
Confidence 888888876
No 108
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.47 E-value=4.4e-13 Score=79.62 Aligned_cols=69 Identities=30% Similarity=0.529 Sum_probs=55.3
Q ss_pred EEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCceeeeeeEEE
Q psy14540 20 VSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRV 96 (291)
Q Consensus 20 v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~l~v 96 (291)
++|.|.+.+.|.+.+.|++++..+...++... ....|.|.+++.+|+|.|+|.+.|..|.......|.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~--------~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 69 (69)
T cd05725 1 VEFQCEVGGDPVPTVLWRKEDGELPKGRAEIL--------DDKSLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV 69 (69)
T ss_pred CEEEEECccCCCCEEEEEECCccCCCCcEEEe--------eCCEEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence 57999999999999999999877664433221 1135999999999999999999999998887776654
No 109
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.46 E-value=4e-13 Score=79.65 Aligned_cols=67 Identities=33% Similarity=0.670 Sum_probs=53.9
Q ss_pred EEEEEEecCCCCCeeEEEECCeecC-CCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCceeeeeeE
Q psy14540 20 VSLKCIATGNPTPHISWKLDGYPLA-GDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADM 94 (291)
Q Consensus 20 v~l~C~~~~~~~~~v~W~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~l 94 (291)
|.|.|.+.+.|.|.+.|+|++..+. ..++.... ...|.|.+++.+|+|.|+|.+.|..|..+.++.|
T Consensus 1 v~L~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~--------~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L 68 (69)
T cd05746 1 VQIPCSAQGDPEPTITWNKDGVQVTESGKFHISP--------EGYLAIRDVGVADQGRYECVARNTIGYASVSMVL 68 (69)
T ss_pred CEeEecceEeCCCEEEEEECCEECCCCCCEEECC--------CCEEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence 5799999999999999999998876 33332211 1359999999999999999999999988777655
No 110
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.46 E-value=5.1e-13 Score=83.82 Aligned_cols=81 Identities=30% Similarity=0.482 Sum_probs=60.3
Q ss_pred CCcEEEEEEecCCCCCeeEEEECCeecC---CCe-eEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCceeeee
Q psy14540 17 GPPVSLKCIATGNPTPHISWKLDGYPLA---GDR-FVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQTHSA 92 (291)
Q Consensus 17 g~~v~l~C~~~~~~~~~v~W~~~~~~~~---~~~-~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~ 92 (291)
|+.++|.|.+.+.|.+.+.|++++..+. ... ........ .. ...|+|.+++.+|+|.|+|.+.|..|.....+
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v-~~--~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~ 77 (90)
T cd05726 1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSV-SQ--TGDLTITNVQRSDVGYYICQTLNVAGSILTKA 77 (90)
T ss_pred CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEE-CC--CCeEEEeeCChhhCEEEEEEEEcCCCceEEEE
Confidence 7899999999999999999999876431 000 00011111 11 13599999999999999999999999999999
Q ss_pred eEEEEcCC
Q psy14540 93 DMRVYDAP 100 (291)
Q Consensus 93 ~l~v~~~~ 100 (291)
.|.|.+..
T Consensus 78 ~l~V~~~~ 85 (90)
T cd05726 78 YLEVTDVI 85 (90)
T ss_pred EEEEeecc
Confidence 99998643
No 111
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.45 E-value=7.4e-13 Score=80.68 Aligned_cols=69 Identities=30% Similarity=0.487 Sum_probs=44.2
Q ss_pred EEEEeeCCCCCceeEEeECCEeccCCCceEEec------cCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceE
Q psy14540 126 VQCLVTKGDPPLTISWLKNGLPILSDAEITIRS------SGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSN 195 (291)
Q Consensus 126 l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~------~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~ 195 (291)
|.|.+ .|.|.|.++|+++|.++.......... .......|.|..+...|.|.|+|.|.|..|....++.
T Consensus 3 i~~~v-~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~ 77 (81)
T cd04971 3 IPFTV-RGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSIS 77 (81)
T ss_pred EEEEe-EeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEE
Confidence 68888 799999999999999987655322111 1122345666666666666666666666665554443
No 112
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.45 E-value=2.9e-13 Score=80.57 Aligned_cols=61 Identities=33% Similarity=0.442 Sum_probs=38.9
Q ss_pred eEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCC
Q psy14540 124 AGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASD 190 (291)
Q Consensus 124 ~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~ 190 (291)
+.|.|.+ .|.|.|.+.|+++|.++....+... ....|.|.++...|+|.|+|.+.|..|..
T Consensus 1 ~~l~c~v-~g~P~p~v~W~k~g~~l~~~~~~~~-----~~~~L~I~~v~~~D~G~YtC~a~N~~g~~ 61 (71)
T cd04976 1 VRLPVKV-KAYPPPEIQWYKNGKLISEKNRTKK-----SGHSLTIKDVTEEDAGNYTVVLTNKQAKL 61 (71)
T ss_pred CEEEeEE-EEeCCCEEEEEECCEECCCCCEEEc-----CCCEEEECcCCHHHCEEEEEEEEcCCccE
Confidence 4689999 7999999999999998865532211 12345555555555555555555544443
No 113
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.45 E-value=4.3e-13 Score=81.50 Aligned_cols=67 Identities=27% Similarity=0.429 Sum_probs=39.9
Q ss_pred CCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCC
Q psy14540 121 GDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASD 190 (291)
Q Consensus 121 g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~ 190 (291)
|+.+.|.|.+ .|.|.|.+.|++++..+.......... .....|.|..+...|.|.|+|.|.|..|..
T Consensus 1 G~~~~l~C~~-~g~P~p~i~W~~~g~~~~~~~~~~~~~--~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~ 67 (76)
T cd04978 1 GETGRLDCEA-EGIPQPTITWRLNGVPIEELPPDPRRR--VDGGTLILSNVQPNDTAVYQCNASNVHGYL 67 (76)
T ss_pred CCeEEEEEEc-eeeCCCEEEEEECCEECCCCCCcceEE--ccCCEEEECCCChhhCEEEEEEEEccCCeE
Confidence 6789999999 799999999999998876443211000 012234444444444444444444444433
No 114
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.44 E-value=1.4e-12 Score=78.84 Aligned_cols=73 Identities=38% Similarity=0.660 Sum_probs=53.7
Q ss_pred EEEEEEecCCCCCeeEEEECCeecC-CCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCceeeeeeEEE
Q psy14540 20 VSLKCIATGNPTPHISWKLDGYPLA-GDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRV 96 (291)
Q Consensus 20 v~l~C~~~~~~~~~v~W~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~l~v 96 (291)
++|.|.+.+.|.|.++|+|++.... .... ......... ..|.|.+++.+|+|.|+|.+.|..|.....+.|.|
T Consensus 1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~--~~~~~~~~~--~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V 74 (75)
T cd05763 1 ARLECAATGHPTPQIAWQKDGGTDFPAARE--RRMHVMPED--DVFFIVDVKIEDTGVYSCTAQNTAGSISANATLTV 74 (75)
T ss_pred CEeEeecccccCCEEEEEeCCCccCCcccc--cceEEecCC--CEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEE
Confidence 4689999999999999999876422 1110 000111111 35899999999999999999999998888888776
No 115
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.44 E-value=4.7e-13 Score=78.91 Aligned_cols=64 Identities=25% Similarity=0.481 Sum_probs=42.3
Q ss_pred eEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCce
Q psy14540 124 AGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSS 194 (291)
Q Consensus 124 ~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~ 194 (291)
+.|.|.+ .|.|.|.+.|+++|.++...... . ....|.|..+..+|.|.|+|.|.|..|......
T Consensus 1 ~~~~c~v-~G~P~P~v~W~k~g~~l~~~~~~--~----~~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~ 64 (70)
T cd05864 1 VKIPVKY-YGYPPPEVKWYKNGQLIVLNHTF--K----RGVHLTIYEVTEKDAGNYTVVLTNPITKEEQRH 64 (70)
T ss_pred CEEEeEE-EEeCCCEEEEEECCEECCCCCEE--c----cCCEEEECcCCHHHCEEEEEEEEECCCceeeEE
Confidence 4689999 79999999999999998654221 1 122466666666666666666666655444433
No 116
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.44 E-value=5.4e-13 Score=79.12 Aligned_cols=67 Identities=30% Similarity=0.588 Sum_probs=50.6
Q ss_pred eEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceE
Q psy14540 124 AGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSN 195 (291)
Q Consensus 124 ~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~ 195 (291)
+.|.|.+ .|.|.|.+.|++++..+....+..+.. ...|.|..+...|.|.|+|.|.|..|.......
T Consensus 1 v~L~C~~-~g~P~p~i~W~k~g~~~~~~~~~~~~~----~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 67 (69)
T cd05746 1 VQIPCSA-QGDPEPTITWNKDGVQVTESGKFHISP----EGYLAIRDVGVADQGRYECVARNTIGYASVSMV 67 (69)
T ss_pred CEeEecc-eEeCCCEEEEEECCEECCCCCCEEECC----CCEEEECcCChhhCEEEEEEEECCCCcEEEEEE
Confidence 5799999 699999999999999887655544432 235888888888888888888887776655443
No 117
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.44 E-value=2.3e-12 Score=82.17 Aligned_cols=30 Identities=20% Similarity=0.501 Sum_probs=26.8
Q ss_pred cceeecCCCceEEEEEeeCCCCCceeEEeEC
Q psy14540 114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKN 144 (291)
Q Consensus 114 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~ 144 (291)
....+.+|+.++|.|.+ .|.|.|.+.|+++
T Consensus 9 ~~~~~~~G~~v~l~C~~-~G~P~p~i~W~k~ 38 (98)
T cd05870 9 KNETTVENGAATLSCKA-EGEPIPEITWKRA 38 (98)
T ss_pred ccEEEcCCCcEEEEEec-ccCCCCeEEEEEC
Confidence 45778899999999999 7999999999994
No 118
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=99.44 E-value=7e-13 Score=79.43 Aligned_cols=70 Identities=41% Similarity=0.687 Sum_probs=55.4
Q ss_pred EEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCceeeeeeEEE
Q psy14540 20 VSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRV 96 (291)
Q Consensus 20 v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~l~v 96 (291)
+.|.|.+.+.|.|.+.|++++..+....... ......|.|.+++.+|+|.|+|.+.|..|.....+.|.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~-------~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05731 1 LLLECIAEGLPTPEISWIKIGGELPADRTKF-------ENFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV 70 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCeECCCCceeE-------ecCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence 5799999999999999999988765332211 111246999999999999999999999998887777765
No 119
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=99.44 E-value=2.3e-12 Score=80.88 Aligned_cols=75 Identities=20% Similarity=0.319 Sum_probs=54.1
Q ss_pred cceeeeecCCcEEEEEEecCCCCCeeEEEECCeecC---CCeeEe-ceEE-eeccceEEEEEEeecCCCCCeEEEEEEeC
Q psy14540 9 FIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLA---GDRFVM-GQYM-SLHGDVISHVNISSVRVEDSGIYQCTATN 83 (291)
Q Consensus 9 ~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~---~~~~~~-~~~~-~~~~~~~~~l~i~~~~~~d~G~y~C~~~~ 83 (291)
..++++.+|+++.|.|.+.+.|.+.+.|++++..+. ...... .+.. .........|.|.+++.+|+|.|+|.+..
T Consensus 4 ~~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t 83 (95)
T cd05882 4 TQDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFT 83 (95)
T ss_pred cccEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEe
Confidence 356789999999999999998889999999875431 111111 1111 11222457899999999999999999875
No 120
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=99.43 E-value=3.8e-12 Score=79.78 Aligned_cols=91 Identities=26% Similarity=0.422 Sum_probs=68.9
Q ss_pred CCcceeecceeeeecCCcEEEEEEecCCCCC-eeEEEECCeecCC---CeeEeceEEeeccceEEEEEEeecCCCC-CeE
Q psy14540 2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTP-HISWKLDGYPLAG---DRFVMGQYMSLHGDVISHVNISSVRVED-SGI 76 (291)
Q Consensus 2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~-~v~W~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~i~~~~~~d-~G~ 76 (291)
||.| .....+.+.+|+.+.|.|.+.+.|.| .|.|.+++..+.. .++.+... .......+.|.|.++...| .|.
T Consensus 2 pP~i-~~~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~-~~~~g~~S~L~I~~~~~~d~~g~ 79 (98)
T cd05898 2 PPII-SSEQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERT-STGSGVLSTLTINNIMEADFQTH 79 (98)
T ss_pred CCEE-ecCceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEE-ccCCCcEEEEEECCCccccCCcE
Confidence 6766 55667789999999999999776654 5899998877652 34443222 1234567899999998877 789
Q ss_pred EEEEEeCCCCceeeeeeE
Q psy14540 77 YQCTATNRVGSQTHSADM 94 (291)
Q Consensus 77 y~C~~~~~~~~~~~~~~l 94 (291)
|.|.+.|..|.....+.|
T Consensus 80 Y~C~a~N~~G~d~~~i~L 97 (98)
T cd05898 80 YNCTAWNSFGSGTAIIQL 97 (98)
T ss_pred EEEEEEeCCccceEEEEe
Confidence 999999999988777655
No 121
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.43 E-value=2.1e-12 Score=79.72 Aligned_cols=80 Identities=33% Similarity=0.547 Sum_probs=55.0
Q ss_pred CceEEEEEeeCCCCCc--eeEEeECCEeccCCC---ceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEE
Q psy14540 122 DRAGVQCLVTKGDPPL--TISWLKNGLPILSDA---EITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNL 196 (291)
Q Consensus 122 ~~~~l~C~~~~~~p~~--~~~W~~~~~~~~~~~---~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~ 196 (291)
++++|.|.+ .|.|.+ .+.|++++.++.... +.....
T Consensus 1 ~~~~L~C~a-~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~-------------------------------------- 41 (85)
T cd05854 1 ENLTLQCHA-SHDPTMDLTFTWSLDDFPIDLDKPNGHYRRME-------------------------------------- 41 (85)
T ss_pred CcEEEEEEE-ecCCCCCeEEEEEECCeEccccCCCCcEEEEE--------------------------------------
Confidence 468999999 688876 689999998875422 110000
Q ss_pred EEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCC
Q psy14540 197 RVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPP 241 (291)
Q Consensus 197 ~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p 241 (291)
+....+.|.|.+++..|+|.|+|.|.|..|...++..|.|..+|
T Consensus 42 -~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L~V~~~P 85 (85)
T cd05854 42 -VKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASATLVVRGPP 85 (85)
T ss_pred -ecceEeEEEEccCChhhCeEEEEEEecCCCCEEEEEEEEEECCC
Confidence 00113457777777788888888888888888888888887765
No 122
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.43 E-value=2.3e-12 Score=82.14 Aligned_cols=34 Identities=18% Similarity=0.350 Sum_probs=29.1
Q ss_pred ceeecCCCceEEEEEeeCCCCCceeEEeECCEecc
Q psy14540 115 SIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPIL 149 (291)
Q Consensus 115 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~ 149 (291)
...+.+|+.+.|.|.+ .|.|.+.+.|++++..+.
T Consensus 10 ~~~~~~g~~v~l~C~~-~g~p~p~v~W~~~~~~~~ 43 (96)
T cd05732 10 NQTAVELEQITLTCEA-EGDPIPEITWRRATRNFS 43 (96)
T ss_pred ceeEecCCcEEEEEEE-eEcCCCcEEEEECCcccC
Confidence 4677899999999999 689999999999886554
No 123
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=99.43 E-value=1e-12 Score=77.56 Aligned_cols=67 Identities=24% Similarity=0.530 Sum_probs=48.3
Q ss_pred CCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceE
Q psy14540 121 GDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSN 195 (291)
Q Consensus 121 g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~ 195 (291)
|+.+.|.|.+ .|.|.|.+.|++++.++....+... ....|.|.++ .|.|.|+|.|.|..|.......
T Consensus 1 G~~v~L~C~a-~G~P~P~v~W~k~g~~l~~~~~~~~-----~~~~L~i~~~--~d~G~Y~C~A~N~~G~~~~~a~ 67 (69)
T cd05739 1 GGSVNLTCVA-VGAPMPYVKWMKGGEELTKEDEMPV-----GRNVLELTNI--YESANYTCVAISSLGMIEATAQ 67 (69)
T ss_pred CCeEEEEEEe-eecCCCEEEEEECCEECCCccceec-----CccEEEEecc--ccCeeEEEEEEeCCCEEEEEEE
Confidence 6789999999 7999999999999988755433221 1235666665 3678888888888776554443
No 124
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.43 E-value=2.7e-12 Score=81.73 Aligned_cols=33 Identities=21% Similarity=0.433 Sum_probs=27.6
Q ss_pred eeecCCCceEEEEEeeCCCCCceeEEeECCEecc
Q psy14540 116 IKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPIL 149 (291)
Q Consensus 116 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~ 149 (291)
..+..|+.++|.|.+ .|.|.|.+.|++++..+.
T Consensus 12 ~~~~~g~~v~l~C~~-~G~P~P~v~W~~~~~~~~ 44 (97)
T cd05869 12 TAMELEEQITLTCEA-SGDPIPSITWRTSTRNIS 44 (97)
T ss_pred eEEEcCCCEEEEEEe-eEeCCCEEEEEECCcccc
Confidence 345568999999999 699999999999887664
No 125
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.42 E-value=4.1e-12 Score=79.22 Aligned_cols=73 Identities=33% Similarity=0.598 Sum_probs=50.1
Q ss_pred cceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCC-ceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCC
Q psy14540 114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDA-EITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASD 190 (291)
Q Consensus 114 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~ 190 (291)
....+.+|+.+.|.|.+..+.|.+.+.|++++..+.... +..... ...|.|..+..+|.|.|+|.+.|..|..
T Consensus 4 ~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~----~~~L~I~~~~~~D~G~Y~C~a~N~~G~~ 77 (86)
T cd05724 4 SDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVD----DGNLLIAEARKSDEGTYKCVATNMVGER 77 (86)
T ss_pred ccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEEcc----CCEEEEeECCcccCEEEEEEEEeccCce
Confidence 446778999999999975688999999999998876532 222211 2346666666666666666666665543
No 126
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=99.42 E-value=4.3e-12 Score=79.70 Aligned_cols=73 Identities=26% Similarity=0.543 Sum_probs=47.7
Q ss_pred cceeecCCCceEEEEEeeCCCCCceeEEeE-CCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCC
Q psy14540 114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLK-NGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVA 188 (291)
Q Consensus 114 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~-~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~ 188 (291)
....+..|+.+.|.|.+ .|.|. .+.|++ ++..+....+......+.....|.|.++..+|.|.|+|.|.|..|
T Consensus 8 ~~~~v~~G~~~~l~C~~-~G~p~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g 81 (92)
T cd04977 8 SQGEISVGESKFFLCQV-IGEPK-DISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKG 81 (92)
T ss_pred CcEEECCCCeEEEEEEe-EeeCC-eEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCC
Confidence 34678899999999999 57764 999997 565554433333333333345666666666666666666666543
No 127
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.42 E-value=3.2e-12 Score=79.71 Aligned_cols=74 Identities=22% Similarity=0.493 Sum_probs=50.6
Q ss_pred cceeecCCCceEEEEEeeCCCCCceeEEeE-CCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCC
Q psy14540 114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLK-NGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASD 190 (291)
Q Consensus 114 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~-~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~ 190 (291)
....+.+|+.+.|.|.+ .|.|. .+.|++ ++..+....+...... .....|.|..+..+|+|.|+|.|.|..|..
T Consensus 8 ~~~~v~~G~~v~l~C~~-~G~P~-~v~W~k~~g~~~~~~~r~~~~~~-g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~ 82 (92)
T cd05866 8 SKVELSVGESKFFTCTA-IGEPE-SIDWYNPQGEKIVSSQRVVVQKE-GVRSRLTIYNANIEDAGIYRCQATDAKGQT 82 (92)
T ss_pred cceEEcCCCeEEEEEEE-EEeCC-eEEEEeCCCeEecCCCCEEEEeC-CCeeEEEEecCChHHCEEEEEEEEcCCCcE
Confidence 34678899999999999 68887 899998 5666655545444322 223456677776666666666666666543
No 128
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=99.41 E-value=2.4e-12 Score=78.00 Aligned_cols=73 Identities=19% Similarity=0.411 Sum_probs=52.2
Q ss_pred EEEEEEecC-CCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCceeeee
Q psy14540 20 VSLKCIATG-NPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQTHSA 92 (291)
Q Consensus 20 v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~ 92 (291)
+.|.|.+.+ .|.+.+.|+++++.+..................+.|.|.+++..|+|.|+|.+.+..|....++
T Consensus 1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~ 74 (76)
T cd05895 1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDSVTA 74 (76)
T ss_pred CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEE
Confidence 479999875 6778999999998876221111111112223447799999999999999999999888766554
No 129
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.41 E-value=3.2e-12 Score=77.50 Aligned_cols=63 Identities=25% Similarity=0.566 Sum_probs=42.5
Q ss_pred eEEEEEeeCCCCCceeEEeECCEeccCCCc-eEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCC
Q psy14540 124 AGVQCLVTKGDPPLTISWLKNGLPILSDAE-ITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASD 190 (291)
Q Consensus 124 ~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~-~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~ 190 (291)
++|.|.+ .|.|.|.+.|+|+|.++..... ..... ....|.|..+..+|.|.|.|.+.|..|..
T Consensus 1 v~L~C~~-~g~P~p~v~W~k~g~~l~~~~~~~~~~~---~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~ 64 (77)
T cd05760 1 VTLRCHI-DGHPRPTYQWFRDGTPLSDGQGNYSVSS---KERTLTLRSAGPDDSGLYYCCAHNAFGSV 64 (77)
T ss_pred CEEEEEe-eecCCCcEEEEECCEECCCCCccEEEeC---CCCEEEEeeCCcccCEEEEEEEEeCCCeE
Confidence 5799999 7999999999999998755432 22211 12356666666666666666666666543
No 130
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.40 E-value=1.4e-12 Score=80.30 Aligned_cols=76 Identities=29% Similarity=0.496 Sum_probs=55.2
Q ss_pred CCcEEEEEEecCCCCCeeEEEECCee---c--CCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCceeee
Q psy14540 17 GPPVSLKCIATGNPTPHISWKLDGYP---L--AGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQTHS 91 (291)
Q Consensus 17 g~~v~l~C~~~~~~~~~v~W~~~~~~---~--~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~ 91 (291)
|+.+.|.|.+.+.|.+.+.|+|++.. + ...... ... .......|.|.+++.+|+|.|+|.+.|..|.....
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~-~~~---~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~ 76 (81)
T cd05765 1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVR-GNV---VVTNIGQLVIYNAQPQDAGLYTCTARNSGGLLRAN 76 (81)
T ss_pred CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCccc-CCE---EEccccEEEEccCCcccCEEEEEEEecCCceEEEE
Confidence 78999999999999999999997421 1 111000 000 01122579999999999999999999999988877
Q ss_pred eeEEE
Q psy14540 92 ADMRV 96 (291)
Q Consensus 92 ~~l~v 96 (291)
+.|.|
T Consensus 77 ~~l~v 81 (81)
T cd05765 77 FPLSV 81 (81)
T ss_pred EEEeC
Confidence 77654
No 131
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.40 E-value=1e-11 Score=79.90 Aligned_cols=38 Identities=39% Similarity=0.776 Sum_probs=33.0
Q ss_pred CCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccC
Q psy14540 112 NSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILS 150 (291)
Q Consensus 112 ~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~ 150 (291)
.+....+.+|+.+.|.|.+ .|.|.|.+.|+++|..+..
T Consensus 7 ~p~~~~v~~G~~~~l~C~~-~g~P~p~i~W~k~g~~l~~ 44 (100)
T cd07693 7 HPSDLIVSKGDPATLNCKA-EGRPTPTIQWLKNGQPLET 44 (100)
T ss_pred cCceeEEcCCCeEEEEeeC-CcCCCCEEEEEECCEECcc
Confidence 3455788899999999999 7899999999999988765
No 132
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.40 E-value=3.9e-12 Score=76.73 Aligned_cols=72 Identities=29% Similarity=0.669 Sum_probs=55.6
Q ss_pred CCcEEEEEEecCCCCCeeEEEE-CCeecCCC-eeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCceeeeeeE
Q psy14540 17 GPPVSLKCIATGNPTPHISWKL-DGYPLAGD-RFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADM 94 (291)
Q Consensus 17 g~~v~l~C~~~~~~~~~v~W~~-~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~l 94 (291)
|+.+.|.|.+.+.|.+.+.|++ ++..+... +... .. . .+|.|.+++.+|+|.|+|.+.|..|.....+.|
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~-----~~-~--~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 72 (74)
T cd05764 1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLV-----YD-N--GTLDILITTVKDTGSFTCIASNAAGEATATVEL 72 (74)
T ss_pred CCeEEEEEEccCcCCCEEEEEeCCCEEecCCCeEEE-----ec-C--CEEEEEECChhhCEEEEEEEECCCCeEEEEEEE
Confidence 7899999999999999999997 56655422 1111 11 1 358899999999999999999999988777766
Q ss_pred EE
Q psy14540 95 RV 96 (291)
Q Consensus 95 ~v 96 (291)
.|
T Consensus 73 ~v 74 (74)
T cd05764 73 HI 74 (74)
T ss_pred EC
Confidence 54
No 133
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.40 E-value=2.1e-12 Score=76.21 Aligned_cols=69 Identities=23% Similarity=0.308 Sum_probs=51.4
Q ss_pred EEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCceeeeeeEE
Q psy14540 20 VSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMR 95 (291)
Q Consensus 20 v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~l~ 95 (291)
+.|.|.+.|.|.|.+.|+|++.++....... . ..+ .+|.|.+++.+|+|.|+|.+.+..........++
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~~~~---~-~~~---~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i~ 69 (72)
T cd07702 1 YRLTPKVKAFPAPEVIWLKDGLPAAEKCSRY---H-VDG---YSLVIKDVTEEDAGIYTILLGIKQYNLFKNLTIT 69 (72)
T ss_pred CeEEeeEEEcCCCeEEEEECCEECCCCCcEE---E-eCC---CEEEECcCCHHHCEEEEEEEEccccceEeeEEEE
Confidence 4689999999999999999999876432111 1 111 3599999999999999999998765555444443
No 134
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=99.40 E-value=3.2e-12 Score=77.43 Aligned_cols=72 Identities=29% Similarity=0.440 Sum_probs=53.7
Q ss_pred EEEEEEecC-CCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCceeeee
Q psy14540 20 VSLKCIATG-NPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQTHSA 92 (291)
Q Consensus 20 v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~ 92 (291)
+.|.|.+.+ .|.+.+.|++++..+....... ............|.|.+++.+|+|.|+|.+.|..|.....+
T Consensus 1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~-~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~ 73 (75)
T cd05750 1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPR-NIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVTA 73 (75)
T ss_pred CEEEEEccCCCCCceEEEEcCCeeccccCCcc-eEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEEE
Confidence 479999999 8999999999998886321110 00112223457799999999999999999999988766554
No 135
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.40 E-value=1.4e-12 Score=78.79 Aligned_cols=23 Identities=35% Similarity=0.771 Sum_probs=20.0
Q ss_pred eEEEEEeeCCCCCceeEEeECCEe
Q psy14540 124 AGVQCLVTKGDPPLTISWLKNGLP 147 (291)
Q Consensus 124 ~~l~C~~~~~~p~~~~~W~~~~~~ 147 (291)
+.|.|.+ .|.|.|.++|++++..
T Consensus 1 a~l~C~~-~G~P~P~v~W~k~~~~ 23 (75)
T cd05763 1 ARLECAA-TGHPTPQIAWQKDGGT 23 (75)
T ss_pred CEeEeec-ccccCCEEEEEeCCCc
Confidence 3689998 7999999999998864
No 136
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=99.40 E-value=1.3e-12 Score=89.20 Aligned_cols=77 Identities=18% Similarity=0.281 Sum_probs=63.9
Q ss_pred EEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCCCCCCCCccc-ccCCceEEEEEEeecCCCC-ceEEEEECCEE
Q psy14540 204 SLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGPFTFGE-LMEGVRTQVACVVQSGDLP-LSLQWYKNGLA 280 (291)
Q Consensus 204 ~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~-~~~g~~v~l~C~~~~~~p~-~~v~W~~~~~~ 280 (291)
+|.|.+++..|+|.|.|.+.+..+.....+.|.|..+|.+...+... ...|+.++|+|.+.+.+|+ +.|.|+++|..
T Consensus 2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~~P~v~~~~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~ 80 (139)
T cd05771 2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSEPPRVRLSLEKLVSMIEEPQTLICHIAGYYPLDVQVEWTREPPG 80 (139)
T ss_pred eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEecCCceEEeCCCceeecCCcEEEEEEECCCCCCCeEEEEEECCCC
Confidence 68899999999999999999887888888999999999887665544 4478999999999444565 59999999854
No 137
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.39 E-value=1.4e-12 Score=77.73 Aligned_cols=68 Identities=19% Similarity=0.435 Sum_probs=47.4
Q ss_pred eEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEE
Q psy14540 124 AGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNL 196 (291)
Q Consensus 124 ~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~ 196 (291)
+.|.|.+ .|.|.|.+.|++++..+..... ... .....|.|..+..+|.|.|+|.|.|..|.....+.+
T Consensus 1 ~~L~C~~-~G~P~P~v~W~k~~~~~~~~~~-~~~---~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l 68 (71)
T cd05876 1 LVLECIA-EGLPTPEVHWDRIDGPLSPNRT-KKL---NNNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTV 68 (71)
T ss_pred CEEEEEe-eEecCCeEEEEECCcCCCCCce-eEE---cCCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEE
Confidence 4689999 7999999999999887654321 111 123467777777777777777777777765555444
No 138
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=99.39 E-value=2.1e-12 Score=79.76 Aligned_cols=74 Identities=28% Similarity=0.494 Sum_probs=48.6
Q ss_pred eeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCc
Q psy14540 116 IKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHS 193 (291)
Q Consensus 116 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~ 193 (291)
+....|+.+.|.|.+ .+.|.+.+.|++++..+........ ......|.|.++..+|+|.|+|.+.|..|.....
T Consensus 4 ~~~~~G~~v~L~C~~-~g~p~p~i~W~k~~~~~~~~~~~~~---~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~ 77 (82)
T cd05856 4 IARPVGSSVRLKCVA-SGNPRPDITWLKDNKPLTPTEIGES---RKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINAT 77 (82)
T ss_pred eeccCCCeEEEEEEe-eEeCCCcEEEEECCcCCcCCcccee---cCceEEEEEccCChhhCEEEEEEEEcCCccEEEE
Confidence 345679999999998 6889999999999987754332211 1123456666666666666666666666544433
No 139
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.39 E-value=9.7e-12 Score=80.64 Aligned_cols=85 Identities=26% Similarity=0.427 Sum_probs=58.1
Q ss_pred CCCceEEEEEeeCCCCCceeEEeECCEeccCCC-ceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEE
Q psy14540 120 SGDRAGVQCLVTKGDPPLTISWLKNGLPILSDA-EITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRV 198 (291)
Q Consensus 120 ~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~ 198 (291)
.|..+.|.|.+ .|.|.+.+.|++++..+.... ++....... +
T Consensus 22 ~g~~v~L~C~a-~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~---------------~--------------------- 64 (109)
T cd05773 22 GSSDANLVCQA-QGVPRVQFRWAKNGVPLDLGNPRYEETTEHT---------------G--------------------- 64 (109)
T ss_pred CCCEEEEEEEC-cccCCCEEEEEECCEECCCCCCeEEEEeecc---------------C---------------------
Confidence 56889999999 689999999999998875332 221110000 0
Q ss_pred eccceEEEEeeee-cCCCeeEEEEeeeCCccCCceeEEEEecCC
Q psy14540 199 NEYTSSLSIATLS-TGHSGNYTCVASNTVASDNHSSNLRVNVPP 241 (291)
Q Consensus 199 ~~~~~~l~i~~~~-~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p 241 (291)
....+.|.|.++. .+|.|.|+|.|.|..|.....+.|.+..+|
T Consensus 65 ~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G~~~~~i~L~~~~~p 108 (109)
T cd05773 65 TVHTSILTIINVSAALDYALFTCTAHNSLGEDSLDIQLVSTSRP 108 (109)
T ss_pred ccceeEEEECcCCccCCCEEEEEEEEeCCccCcEEEEEEecCCC
Confidence 0012457777776 478888888888888888888888777665
No 140
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.38 E-value=2.8e-12 Score=78.70 Aligned_cols=70 Identities=20% Similarity=0.367 Sum_probs=53.7
Q ss_pred eeecceeeeecCCcEEEEEEecC-CCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCC
Q psy14540 6 IYKFIQQTLQPGPPVSLKCIATG-NPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNR 84 (291)
Q Consensus 6 ~~~~~~~~v~~g~~v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~ 84 (291)
++.+....|.+|++++|.|.+.. .+...+.|+|++..+... ...+.|.|.+++.+|+|.|+|.+.+.
T Consensus 3 ~l~~p~~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~~------------~~~~~l~I~~~~~~dsG~Y~C~~~~~ 70 (83)
T cd05753 3 LLQVPSRVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKYS------------HSNSNLSIPQATLSDSGSYHCSGIIG 70 (83)
T ss_pred EEECCcceecCCCCEEEEeeCCCCCcceEEEEEECCeEcccc------------CCCceEEECccCHHHCEEEEEEEEeC
Confidence 34455557999999999999854 556789999999765411 11245899999999999999999977
Q ss_pred CCc
Q psy14540 85 VGS 87 (291)
Q Consensus 85 ~~~ 87 (291)
.+.
T Consensus 71 ~~~ 73 (83)
T cd05753 71 SYD 73 (83)
T ss_pred Cce
Confidence 653
No 141
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=99.38 E-value=3.2e-12 Score=77.42 Aligned_cols=69 Identities=26% Similarity=0.441 Sum_probs=44.4
Q ss_pred eEEEEEeeCCCCCceeEEeECCEeccCCCceEE--eccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCC
Q psy14540 124 AGVQCLVTKGDPPLTISWLKNGLPILSDAEITI--RSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNH 192 (291)
Q Consensus 124 ~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~--~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~ 192 (291)
+.|.|.+..+.|.+.+.|++++.++........ .........|.|..+..+|.|.|+|.|.|..|....
T Consensus 1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~ 71 (75)
T cd05750 1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTV 71 (75)
T ss_pred CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeE
Confidence 469999943399999999999998865443221 111222455666666666666666666666665443
No 142
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.38 E-value=1.2e-11 Score=78.81 Aligned_cols=81 Identities=22% Similarity=0.372 Sum_probs=51.2
Q ss_pred cceeecCCCceEEEEEeeCCCCCc-eeEEeECCEeccCC--CceEEeccC---CceEEEEEeeCCC-CCceeEEEEEEec
Q psy14540 114 RSIKVHSGDRAGVQCLVTKGDPPL-TISWLKNGLPILSD--AEITIRSSG---EYTSSLSIATLST-GHSGNYTCVASNT 186 (291)
Q Consensus 114 ~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~~~~~~~~~--~~~~~~~~~---~~~~~l~i~~~~~-~d~g~y~C~~~~~ 186 (291)
....+.+|+.+.|.|.+ .|.|.| .+.|++++..+... .++.+.... .....|.|..+.. +|.|.|+|.|.|.
T Consensus 9 ~~~~~~~G~~v~L~C~~-~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~C~A~N~ 87 (98)
T cd05758 9 ATQYAILGDKGRVECFI-FSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSYNCTAWNS 87 (98)
T ss_pred CcEEEeCCCcEEEEEEE-cccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeEEEEEEcC
Confidence 44667899999999999 688988 69999999887653 233332211 1123455555555 3356666666665
Q ss_pred CCCCCCceE
Q psy14540 187 VASDNHSSN 195 (291)
Q Consensus 187 ~~~~~~~~~ 195 (291)
.|.....+.
T Consensus 88 ~G~~~~~~~ 96 (98)
T cd05758 88 FGSGTAIIS 96 (98)
T ss_pred CCcccEEEE
Confidence 555444433
No 143
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.38 E-value=4.5e-12 Score=79.25 Aligned_cols=69 Identities=20% Similarity=0.464 Sum_probs=43.7
Q ss_pred cceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCC
Q psy14540 114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVA 188 (291)
Q Consensus 114 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~ 188 (291)
....+.+|+.++|.|.+ .|. .|.+.|++++..+... +..... ....|.|..+..+|.|.|.|.|.|..|
T Consensus 11 ~~~~v~~g~~v~l~C~a-~g~-~p~i~W~kng~~l~~~-~~~~~~---~~~~L~I~~v~~~D~G~Y~C~a~N~~G 79 (91)
T cd05740 11 GNQPPEDNQPVTLTCEA-EGQ-ATYIWWVNNGSLLVPP-RLQLSN---DNRTLTFNNVTRSDTGHYQCEASNEVS 79 (91)
T ss_pred CccccccCCcEEEEEEe-CCC-CCEEEEEECCEECCCC-CEEEeC---CCCEEEECcCChhhCEEEEEEEEcCCC
Confidence 34678899999999999 677 8999999999876432 222111 112355555555555555555444444
No 144
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=99.38 E-value=5.8e-12 Score=78.96 Aligned_cols=85 Identities=28% Similarity=0.459 Sum_probs=48.8
Q ss_pred CCceEEEEEeeCCCCCceeEEeEC----CEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEE
Q psy14540 121 GDRAGVQCLVTKGDPPLTISWLKN----GLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNL 196 (291)
Q Consensus 121 g~~~~l~C~~~~~~p~~~~~W~~~----~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~ 196 (291)
|+.+.|.|.+ .+.|.|.+.|+++ +..+.......... +.. .+...
T Consensus 1 G~~v~L~C~~-~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~---------~~~-----~~~~~---------------- 49 (90)
T cd05858 1 GSTVEFVCKV-YSDAQPHIQWLKHVEKNGSKYGPDGLPYVTV---------LKT-----AGVNT---------------- 49 (90)
T ss_pred CCeEEEEEEE-ecCCCCEEEEEEecccCCcEeCCCCCeeEEE---------ecc-----CCcee----------------
Confidence 6789999999 6999999999984 33332211111000 000 00000
Q ss_pred EEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEE
Q psy14540 197 RVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRV 237 (291)
Q Consensus 197 ~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v 237 (291)
.......|.|.++..+|+|.|+|.|.|..|....+..|.|
T Consensus 50 -~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V 89 (90)
T cd05858 50 -TDKEMEVLYLRNVTFEDAGEYTCLAGNSIGISHHSAWLTV 89 (90)
T ss_pred -cCCceeEEEEccCCHHHCEEEEEEEEeCCCcccceEEEEE
Confidence 0011245677777777777777777777777666666665
No 145
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.38 E-value=2.3e-12 Score=76.54 Aligned_cols=63 Identities=33% Similarity=0.513 Sum_probs=39.6
Q ss_pred eEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCC
Q psy14540 124 AGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNH 192 (291)
Q Consensus 124 ~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~ 192 (291)
++|.|.+ .|.|.|.+.|++++..+... +.... ....|.|.++..+|.|.|+|.+.|..|....
T Consensus 1 v~l~C~~-~g~P~p~v~W~k~~~~~~~~-~~~~~----~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~ 63 (69)
T cd05725 1 VEFQCEV-GGDPVPTVLWRKEDGELPKG-RAEIL----DDKSLKIRNVTAGDEGSYTCEAENMVGKIEA 63 (69)
T ss_pred CEEEEEC-ccCCCCEEEEEECCccCCCC-cEEEe----eCCEEEECcCChhHCEEEEEEEEcCCCcEEE
Confidence 4799998 79999999999998766432 22221 1224556666666666666665555554433
No 146
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=99.37 E-value=9.1e-12 Score=78.54 Aligned_cols=72 Identities=21% Similarity=0.324 Sum_probs=53.0
Q ss_pred cceeeeecCCcEEEEEEecCCCCCeeEEEECCee---------cCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEE
Q psy14540 9 FIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYP---------LAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQC 79 (291)
Q Consensus 9 ~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~---------~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C 79 (291)
+.++.+.+|++++|.|.+.+.|.+.+.|++.+.. ....++.. .......++|.|.+++.+|+|.|+|
T Consensus 4 ~~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~----~~~~~~~~sL~I~~v~~~DsG~Y~C 79 (95)
T cd07701 4 TQNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIEL----VRASWHELSISISDVSLSDEGQYTC 79 (95)
T ss_pred cceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEE----EECCCCcEEEEECcCCcccCEEEEE
Confidence 5668899999999999999888899999874321 11222211 1112344779999999999999999
Q ss_pred EEeCC
Q psy14540 80 TATNR 84 (291)
Q Consensus 80 ~~~~~ 84 (291)
.+...
T Consensus 80 ~~~t~ 84 (95)
T cd07701 80 SLFTM 84 (95)
T ss_pred EeEee
Confidence 98853
No 147
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=99.36 E-value=1.2e-11 Score=77.50 Aligned_cols=86 Identities=20% Similarity=0.319 Sum_probs=60.5
Q ss_pred ecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCC-C
Q psy14540 8 KFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRV-G 86 (291)
Q Consensus 8 ~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~-~ 86 (291)
.|..+.+.+|+.+.|.|.+.+ |.+.+.|++++..+............. ...|.|.+++.+|+|.|+|.+.+.. +
T Consensus 2 ~~~~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~~~----~~~L~I~~~~~~D~G~Y~C~a~~~~~~ 76 (89)
T cd04979 2 EEKVVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLLVT----EDGLLIRSVSPADAGVYTCQSVEHGFK 76 (89)
T ss_pred cceEEEEECCCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEEEc----CCCEEEccCCHHHCEEEEEEEecCccc
Confidence 456678999999999999876 778999999988765321000011111 1238899999999999999998544 4
Q ss_pred ceeeeeeEEEEc
Q psy14540 87 SQTHSADMRVYD 98 (291)
Q Consensus 87 ~~~~~~~l~v~~ 98 (291)
....+..|.|.+
T Consensus 77 ~~~~~~~l~V~~ 88 (89)
T cd04979 77 QTLATYSLNVLE 88 (89)
T ss_pred eeEeEEEEEEec
Confidence 456666676653
No 148
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.36 E-value=7.7e-12 Score=75.43 Aligned_cols=71 Identities=28% Similarity=0.611 Sum_probs=49.6
Q ss_pred CCceEEEEEeeCCCCCceeEEeE-CCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEE
Q psy14540 121 GDRAGVQCLVTKGDPPLTISWLK-NGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNL 196 (291)
Q Consensus 121 g~~~~l~C~~~~~~p~~~~~W~~-~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~ 196 (291)
|+.+.|.|.+ .|.|.|.+.|++ ++..+....+..... ...|.|..+..+|.|.|+|.|.|..|.....+.+
T Consensus 1 G~~~~l~C~~-~g~P~p~v~W~~~~~~~~~~~~~~~~~~----~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 72 (74)
T cd05764 1 GQRATLRCKA-RGDPEPAIHWISPDGKLISNSSRTLVYD----NGTLDILITTVKDTGSFTCIASNAAGEATATVEL 72 (74)
T ss_pred CCeEEEEEEc-cCcCCCEEEEEeCCCEEecCCCeEEEec----CCEEEEEECChhhCEEEEEEEECCCCeEEEEEEE
Confidence 6789999999 688999999997 566654443332221 2357777777788888888887777765544443
No 149
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=99.36 E-value=8.5e-12 Score=75.64 Aligned_cols=73 Identities=33% Similarity=0.551 Sum_probs=56.7
Q ss_pred EEEEEEecCCCCCeeEEEECCeecCCCe-eEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCceeeeeeEEEE
Q psy14540 20 VSLKCIATGNPTPHISWKLDGYPLAGDR-FVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVY 97 (291)
Q Consensus 20 v~l~C~~~~~~~~~v~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~l~v~ 97 (291)
+.|.|.+.+.|.+.+.|+|++..+.... .... .. .....|.|.+++.+|.|.|+|.+.|..|.....+.|.|.
T Consensus 1 ~~L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~----~~-~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 74 (76)
T cd05736 1 ASLRCHAEGIPLPRLTWLKNGMDITPKLSKQLT----LI-ANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVE 74 (76)
T ss_pred CEeEeEeeecCCCEEEEEECCEECCCCCCccEE----Ee-CCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEE
Confidence 3689999999999999999998876321 1111 11 112468999999999999999999999998888888774
No 150
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.36 E-value=8.5e-12 Score=78.25 Aligned_cols=26 Identities=35% Similarity=0.686 Sum_probs=22.9
Q ss_pred CCceEEEEEeeCCCCCceeEEeECCEe
Q psy14540 121 GDRAGVQCLVTKGDPPLTISWLKNGLP 147 (291)
Q Consensus 121 g~~~~l~C~~~~~~p~~~~~W~~~~~~ 147 (291)
|+.+.|.|.+ .+.|.|.+.|++++..
T Consensus 1 G~~v~L~C~~-~g~P~p~v~W~k~g~~ 26 (90)
T cd05726 1 GRTVTFQCEA-TGNPQPAIFWQKEGSQ 26 (90)
T ss_pred CCEEEEEEEC-CccCCCEEEEEeCCCc
Confidence 6789999998 7999999999998754
No 151
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.35 E-value=5.4e-12 Score=75.89 Aligned_cols=69 Identities=32% Similarity=0.608 Sum_probs=52.7
Q ss_pred EEEEEEecCCCCCeeEEEECCeecCC---CeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCc-eeeeeeEE
Q psy14540 20 VSLKCIATGNPTPHISWKLDGYPLAG---DRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGS-QTHSADMR 95 (291)
Q Consensus 20 v~l~C~~~~~~~~~v~W~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~-~~~~~~l~ 95 (291)
++|.|.+.|.|.|.+.|++++..+.. .++.. ... ..|.|.+++.+|+|.|+|.+.|..|. .+....|.
T Consensus 1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~------~~~--g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~ 72 (74)
T cd05738 1 ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQ------LRS--GALQIENSEESDQGKYECVATNSAGTRYSAPANLY 72 (74)
T ss_pred CEEEEEEeEecCCEEEEEECCEECccCCCCCEEE------cCC--cEEEECCCChhhCEEEEEEEECCCCceEcccEEEE
Confidence 47999999999999999999987752 12211 111 34899999999999999999998887 35556555
Q ss_pred E
Q psy14540 96 V 96 (291)
Q Consensus 96 v 96 (291)
|
T Consensus 73 v 73 (74)
T cd05738 73 V 73 (74)
T ss_pred E
Confidence 4
No 152
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.35 E-value=8.8e-12 Score=78.59 Aligned_cols=67 Identities=28% Similarity=0.538 Sum_probs=47.6
Q ss_pred CCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCC-CCCceeEEEEEEecCCCC
Q psy14540 120 SGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLS-TGHSGNYTCVASNTVASD 190 (291)
Q Consensus 120 ~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~g~y~C~~~~~~~~~ 190 (291)
+|+.++|.|.+ .|.|.|.+.|+++|..+........... ...|.|..+. ..|.|.|+|.|.|..|..
T Consensus 18 ~g~~v~l~C~~-~G~P~P~i~W~k~g~~l~~~~~~~~~~~---~g~L~i~~~~~~~D~G~Y~C~A~N~~G~~ 85 (94)
T cd05848 18 DEKKVILNCEA-RGNPVPTYRWLRNGTEIDTESDYRYSLI---DGNLIISNPSEVKDSGRYQCLATNSIGSI 85 (94)
T ss_pred CCCEEEEEEEe-eecCCCEEEEEECCeECccCCCceEEee---CCeEEEccCCccCcCEEEEEEEEcCCCeE
Confidence 57899999999 7999999999999998864432222111 2356666654 477777777777777654
No 153
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.35 E-value=3.6e-12 Score=75.26 Aligned_cols=60 Identities=25% Similarity=0.319 Sum_probs=41.1
Q ss_pred eEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCC
Q psy14540 124 AGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVA 188 (291)
Q Consensus 124 ~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~ 188 (291)
+.|.|.+ .|.|.|++.|++++.++....... ... ...|.|.++..+|+|.|+|.+.|...
T Consensus 1 ~~l~c~v-~g~P~P~v~W~kdg~~l~~~~~~~-~~~---~~~L~I~~v~~~D~G~YtC~a~~~~~ 60 (72)
T cd07702 1 YRLTPKV-KAFPAPEVIWLKDGLPAAEKCSRY-HVD---GYSLVIKDVTEEDAGIYTILLGIKQY 60 (72)
T ss_pred CeEEeeE-EEcCCCeEEEEECCEECCCCCcEE-EeC---CCEEEECcCCHHHCEEEEEEEEcccc
Confidence 4689999 799999999999999886542211 111 22567777777777777776666543
No 154
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=99.35 E-value=7.8e-12 Score=77.58 Aligned_cols=79 Identities=27% Similarity=0.492 Sum_probs=61.1
Q ss_pred eeecceeeeecCCcEEEEEEecC-CCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCC
Q psy14540 6 IYKFIQQTLQPGPPVSLKCIATG-NPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNR 84 (291)
Q Consensus 6 ~~~~~~~~v~~g~~v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~ 84 (291)
...|....+.+|++++|.|.+.+ .+.+.+.|++++..+..... .....|.|.+++.+|+|.|+|.+.|.
T Consensus 5 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~~~----------~~~~~L~I~~v~~~DsG~Y~C~a~n~ 74 (85)
T cd05754 5 VEEPRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSRAM----------DFNGILTIRNVQLSDAGTYVCTGSNM 74 (85)
T ss_pred ecCCCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCccc----------ccCCEEEECCCCHHHCEEEEEEEecc
Confidence 34566778999999999999875 67889999998865442110 01145999999999999999999998
Q ss_pred CCceeeeeeE
Q psy14540 85 VGSQTHSADM 94 (291)
Q Consensus 85 ~~~~~~~~~l 94 (291)
.|.....+.|
T Consensus 75 ~g~~~~~~~l 84 (85)
T cd05754 75 LDTDEATATL 84 (85)
T ss_pred CCeEeEEEEE
Confidence 8877766544
No 155
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=99.34 E-value=2.4e-11 Score=74.47 Aligned_cols=69 Identities=26% Similarity=0.483 Sum_probs=53.5
Q ss_pred ecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCC
Q psy14540 8 KFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNR 84 (291)
Q Consensus 8 ~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~ 84 (291)
.|.+..+..|+++.|.|.+.+ +.+.+.|++||..+..... ...... ..|.|.+++.+|+|.|+|.+...
T Consensus 2 ~P~~~~v~~G~~v~L~C~~~~-~~~~i~W~~ng~~i~~~~~---r~~~~~----~~L~I~nv~~~DsG~Y~C~a~e~ 70 (87)
T cd05873 2 DPRQRTFKLGNNAELKCSPKS-NLARVVWKFDGKVLTPESA---KYLLYR----DGLLIFNASEADAGRYQCLSVEK 70 (87)
T ss_pred CcceEEEECCCCEEEEEECCC-CCCeEEEEECCEECCCCCc---eEEEEC----CcEEEeCCCHHHCEEEEEEEEec
Confidence 577889999999999999764 5778999999999873311 111111 23889999999999999999754
No 156
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.34 E-value=1.2e-11 Score=77.40 Aligned_cols=24 Identities=33% Similarity=0.614 Sum_probs=21.6
Q ss_pred CCceEEEEEeeCCCCCceeEEeECC
Q psy14540 121 GDRAGVQCLVTKGDPPLTISWLKNG 145 (291)
Q Consensus 121 g~~~~l~C~~~~~~p~~~~~W~~~~ 145 (291)
|+.++|.|.+ .|.|.|.++|+|++
T Consensus 1 G~~v~l~C~v-~g~P~P~i~W~k~~ 24 (90)
T cd04974 1 GSDVEFHCKV-YSDAQPHIQWLKHV 24 (90)
T ss_pred CCcEEEEEEE-eCCCCCeEEEEEec
Confidence 6789999999 79999999999964
No 157
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=99.34 E-value=1.4e-11 Score=77.50 Aligned_cols=79 Identities=28% Similarity=0.466 Sum_probs=58.8
Q ss_pred CcceeecceeeeecC---CcEEEEEEecCCCCCeeEEEECCeecCCC-eeEeceEEeeccceEEEEEEeecC-CCCCeEE
Q psy14540 3 PQLIYKFIQQTLQPG---PPVSLKCIATGNPTPHISWKLDGYPLAGD-RFVMGQYMSLHGDVISHVNISSVR-VEDSGIY 77 (291)
Q Consensus 3 p~~~~~~~~~~v~~g---~~v~l~C~~~~~~~~~v~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~-~~d~G~y 77 (291)
|.|+.+|.+..+.+| +.+.|.|.+.+.|.+.++|++++..+... .... .... ..|.|.++. ..|+|.|
T Consensus 2 P~f~~~p~~~~~~~~~~~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~---~~~~----~~L~i~~~~~~~d~G~Y 74 (91)
T cd04967 2 PVFEEQPDDTIFPEESDEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRY---SLVG----GNLVISNPSKAKDAGRY 74 (91)
T ss_pred CeeEeCCCCEEccCCCCCCEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCE---EEEC----CEEEEecCCccCCCEEE
Confidence 778888888766554 57999999998999999999999887421 1111 1111 247888876 4899999
Q ss_pred EEEEeCCCCce
Q psy14540 78 QCTATNRVGSQ 88 (291)
Q Consensus 78 ~C~~~~~~~~~ 88 (291)
+|.+.|..|..
T Consensus 75 ~C~a~N~~G~~ 85 (91)
T cd04967 75 QCLASNIVGTV 85 (91)
T ss_pred EEEEEcCCCEE
Confidence 99999888754
No 158
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=99.34 E-value=3.7e-11 Score=74.76 Aligned_cols=80 Identities=34% Similarity=0.549 Sum_probs=61.1
Q ss_pred eeeecCCcEEEEEEecCCCCCeeEEEECCeecCCC-eeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCceee
Q psy14540 12 QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGD-RFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQTH 90 (291)
Q Consensus 12 ~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~ 90 (291)
..+..|+.+.|.|.+.+.|.+.+.|++++..+... ..... ........|.|.+++.+|+|.|.|.+.+..|....
T Consensus 4 ~~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~----~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~ 79 (85)
T cd05729 4 HAVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGY----KVRKKKWTLILESVVPSDSGKYTCIVENKYGSINH 79 (85)
T ss_pred eEecCCCcEEEEEEcCCCCCCeEEEEECCEECcccCceeEE----EccCcEEEEEEeECCcccCEEEEEEEEECCceEEE
Confidence 35678999999999998888899999999877622 11110 11123356999999999999999999988887777
Q ss_pred eeeEE
Q psy14540 91 SADMR 95 (291)
Q Consensus 91 ~~~l~ 95 (291)
++.|.
T Consensus 80 ~~~l~ 84 (85)
T cd05729 80 TYKVD 84 (85)
T ss_pred EEEEe
Confidence 66654
No 159
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.34 E-value=1.2e-11 Score=76.73 Aligned_cols=83 Identities=33% Similarity=0.501 Sum_probs=55.0
Q ss_pred CceEEEEEeeCCCCCc--eeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEe
Q psy14540 122 DRAGVQCLVTKGDPPL--TISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVN 199 (291)
Q Consensus 122 ~~~~l~C~~~~~~p~~--~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~ 199 (291)
+.+.|.|.+ .+.|.+ .+.|+++|..+....... ...... ..
T Consensus 1 e~~~L~C~~-~g~P~p~i~~~W~~~g~~i~~~~~~~---------~~~~~~---------------------------~~ 43 (85)
T cd04970 1 ESITLQCHA-SHDPTLDLTFTWSFNGVPIDFDKDGG---------HYRRVG---------------------------GK 43 (85)
T ss_pred CcEEEEEEE-ecCCCCCeEEEEEECCeEeeccCCCc---------cEEEEe---------------------------cc
Confidence 468999999 687866 679999998875321100 000000 00
Q ss_pred ccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCC
Q psy14540 200 EYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPP 241 (291)
Q Consensus 200 ~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p 241 (291)
...+.|.|.+++..|+|.|+|.|.|..+..+.+..|.|..||
T Consensus 44 ~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~pP 85 (85)
T cd04970 44 DSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADLIVRGPP 85 (85)
T ss_pred cccceEEEccCCHHhCeeeEEEEecCCCcEEEEEEEEEECCC
Confidence 013457777788888888888888888777888888887766
No 160
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=99.34 E-value=1e-11 Score=75.50 Aligned_cols=68 Identities=21% Similarity=0.439 Sum_probs=49.3
Q ss_pred CcceeecCCCceEEEEEeeCCCCCc-eeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCC
Q psy14540 113 SRSIKVHSGDRAGVQCLVTKGDPPL-TISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASD 190 (291)
Q Consensus 113 ~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~ 190 (291)
+....+.+|+.+.|.|.+ .|.|.| .+.|+++|.++.... ......|.+..+ .|.|.|.|.|.|..|..
T Consensus 5 P~~~~v~~G~~v~l~C~a-~G~P~P~~I~W~k~g~~l~~~~-------~~~~s~L~i~~~--~d~g~Y~C~A~N~~G~~ 73 (81)
T cd05749 5 PEDLSVTANTPFNLTCQA-VGPPEPVEILWWQGGSPLGDPP-------APSPSVLNVPGL--NETSKFSCEAHNAKGVT 73 (81)
T ss_pred CCceEEcCCCCEEEEEEe-eeecCCeEEEEEECCEECCCCC-------CCCCCEEEEccc--cCCeEEEEEEEeccCcE
Confidence 455788999999999999 799999 799999999885410 011235666554 45677777777777643
No 161
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=99.33 E-value=1.1e-11 Score=75.07 Aligned_cols=69 Identities=25% Similarity=0.437 Sum_probs=41.9
Q ss_pred eEEEEEeeCCCCCceeEEeECCEeccCCCc--eE-EeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCC
Q psy14540 124 AGVQCLVTKGDPPLTISWLKNGLPILSDAE--IT-IRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNH 192 (291)
Q Consensus 124 ~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~--~~-~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~ 192 (291)
+.|.|.+..+.|.+.+.|++++..+..... .. ..........|.|.++...|+|.|+|.+.|..|....
T Consensus 1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~ 72 (76)
T cd05895 1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDSV 72 (76)
T ss_pred CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeE
Confidence 479999855678899999999988754321 11 1111122345666666666666666666666554443
No 162
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.32 E-value=1.4e-11 Score=74.01 Aligned_cols=61 Identities=30% Similarity=0.620 Sum_probs=43.8
Q ss_pred eEEEEEeeCCCCCceeEEeECCEeccC--CCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCC
Q psy14540 124 AGVQCLVTKGDPPLTISWLKNGLPILS--DAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVAS 189 (291)
Q Consensus 124 ~~l~C~~~~~~p~~~~~W~~~~~~~~~--~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 189 (291)
++|.|.+ .|.|.|.+.|++++.++.. ..+.... . ...|.|..+..+|.|.|+|.|.|..|.
T Consensus 1 a~l~C~~-~G~P~p~v~W~k~~~~~~~~~~~~~~~~--~--~g~L~i~~~~~~D~G~Y~C~a~N~~G~ 63 (74)
T cd05738 1 ATMLCAA-SGNPDPEITWFKDFLPVDTTSNGRIKQL--R--SGALQIENSEESDQGKYECVATNSAGT 63 (74)
T ss_pred CEEEEEE-eEecCCEEEEEECCEECccCCCCCEEEc--C--CcEEEECCCChhhCEEEEEEEECCCCc
Confidence 4799998 7999999999999988763 2233222 1 235777777777777777777777665
No 163
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=99.32 E-value=3.9e-11 Score=74.63 Aligned_cols=73 Identities=29% Similarity=0.541 Sum_probs=44.5
Q ss_pred eeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCC
Q psy14540 116 IKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVAS 189 (291)
Q Consensus 116 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 189 (291)
..+..|+.+.|.|.+ .+.|.+.+.|++++..+.................|.|..+..+|.|.|.|.+.|..|.
T Consensus 4 ~~~~~G~~~~l~C~~-~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~ 76 (85)
T cd05729 4 HAVPAGSTVRLKCPA-SGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGS 76 (85)
T ss_pred eEecCCCcEEEEEEc-CCCCCCeEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCce
Confidence 456689999999999 6889999999999887754432222111112234444455555555555555444443
No 164
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.31 E-value=1.5e-11 Score=74.24 Aligned_cols=62 Identities=21% Similarity=0.451 Sum_probs=47.4
Q ss_pred CCcceeecCCCceEEEEEeeCCCCC-ceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEec
Q psy14540 112 NSRSIKVHSGDRAGVQCLVTKGDPP-LTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNT 186 (291)
Q Consensus 112 ~~~~~~~~~g~~~~l~C~~~~~~p~-~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~ 186 (291)
.+....+.+|+.++|.|.+ .+.|. ..+.|++|+..+... ...|.|.++ .+|+|.|+|.+.|.
T Consensus 6 ~P~~~~v~~G~~V~L~C~~-~~~p~~~~~~W~kng~~l~~~-----------~~~l~i~~~-~~dsG~Y~C~a~~~ 68 (78)
T cd05752 6 DPPWTTIFQGEKVTLTCNG-FNSPEQNSTQWYHNGKLLETT-----------TNSYRIRAA-NNDSGEYRCQTQGS 68 (78)
T ss_pred CCCCeEeeCCCCEEEEEeC-CCCCCCccEEEEECCEEeecc-----------CCeEEEeec-ccCCEEeEEECCCC
Confidence 3455778899999999998 56664 579999999877321 345777777 88888888888764
No 165
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=99.31 E-value=2.4e-11 Score=73.61 Aligned_cols=70 Identities=30% Similarity=0.546 Sum_probs=39.8
Q ss_pred eEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceE
Q psy14540 124 AGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSN 195 (291)
Q Consensus 124 ~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~ 195 (291)
+.|.|.+ .|.|.|.+.|++++..+........... .....|.|..+...|.|.|+|.+.|..|.....+.
T Consensus 1 ~~L~C~v-~g~P~p~v~W~k~~~~l~~~~~~~~~~~-~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 70 (76)
T cd05736 1 ASLRCHA-EGIPLPRLTWLKNGMDITPKLSKQLTLI-ANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISS 70 (76)
T ss_pred CEeEeEe-eecCCCEEEEEECCEECCCCCCccEEEe-CCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEE
Confidence 3689999 6899999999999988754432211111 11123445555555555555555554444443333
No 166
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.31 E-value=3.5e-11 Score=76.31 Aligned_cols=39 Identities=26% Similarity=0.537 Sum_probs=32.5
Q ss_pred CcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCC
Q psy14540 113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDA 152 (291)
Q Consensus 113 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~ 152 (291)
+....+.+|+.+.|.|.+ .+.|.+.+.|+|+|..+....
T Consensus 6 P~~~~~~~g~~v~l~C~v-~g~P~p~i~W~k~g~~l~~~~ 44 (95)
T cd05722 6 PSDIVAVRGGPVVLNCSA-EGEPPPKIEWKKDGVLLNLVS 44 (95)
T ss_pred CCCeEEcCCCCEEEeeec-ccCCCCEEEEEECCeECcccc
Confidence 344667789999999999 788999999999999886543
No 167
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.30 E-value=3e-11 Score=76.24 Aligned_cols=66 Identities=24% Similarity=0.451 Sum_probs=43.5
Q ss_pred CCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCC-CCCceeEEEEEEecCCCC
Q psy14540 121 GDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLS-TGHSGNYTCVASNTVASD 190 (291)
Q Consensus 121 g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~g~y~C~~~~~~~~~ 190 (291)
|+.++|.|.+ .|.|.+.++|+++|..+........... ...|.|.++. ..|.|.|+|.|.|..|..
T Consensus 19 g~~v~l~C~a-~g~P~p~i~W~~~g~~l~~~~~~~~~~~---~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~ 85 (94)
T cd05850 19 EEKVTLGCRA-RASPPATYRWKMNGTEIKFAPESRYTLV---AGNLVINNPQKARDAGSYQCLAINRCGTV 85 (94)
T ss_pred CCeEEEEeEc-eeCCCCEEEEEECCEECccCCCceEEEE---CCeEEEccCCccCcCEEEEEEEEcCcCcE
Confidence 5689999999 7999999999999998864322111111 2345555543 466666666666666643
No 168
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=99.30 E-value=8.5e-12 Score=74.67 Aligned_cols=68 Identities=29% Similarity=0.604 Sum_probs=46.2
Q ss_pred eEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEE
Q psy14540 124 AGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNL 196 (291)
Q Consensus 124 ~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~ 196 (291)
+.|.|.+ .|.|.|.+.|++++..+.... .... .....|.|.++..+|.|.|+|.|.|..|.....+.+
T Consensus 1 v~l~C~~-~g~P~p~v~W~k~~~~~~~~~-~~~~---~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l 68 (71)
T cd05731 1 LLLECIA-EGLPTPEISWIKIGGELPADR-TKFE---NFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISV 68 (71)
T ss_pred CEEEEEe-eEecCCeEEEEECCeECCCCc-eeEe---cCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEE
Confidence 4799999 799999999999988764322 1111 123467777777777777777777777655444443
No 169
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=99.29 E-value=1.7e-11 Score=74.28 Aligned_cols=64 Identities=28% Similarity=0.576 Sum_probs=39.9
Q ss_pred eEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCC----CCceeEEEEEEecCCC
Q psy14540 124 AGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLST----GHSGNYTCVASNTVAS 189 (291)
Q Consensus 124 ~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~----~d~g~y~C~~~~~~~~ 189 (291)
+.|.|.+ .|.|.|.++|++++..+.......+... ...+.|.|..+.. +|.|.|+|.|.|..|.
T Consensus 1 i~l~C~~-~G~P~P~v~W~k~g~~l~~~~~~~~~~~-~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~ 68 (77)
T cd05733 1 IVIKCEA-KGNPPPTFSWTRNGTHFDPEKDPRVTMK-PDSGTLVIDNMNGGRAEDYEGEYQCYASNELGT 68 (77)
T ss_pred CEEEeeC-cccCCCeEEEEECCeECCCCCCCCEEEe-CCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCc
Confidence 4789999 7999999999999988754322111111 1133455555432 4566666666666654
No 170
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=99.29 E-value=2.1e-11 Score=76.05 Aligned_cols=75 Identities=19% Similarity=0.301 Sum_probs=52.4
Q ss_pred eeeecCCcEEEEEEecCCCCCeeEEEECCeec-C--CCeeEe----------ceEEeeccceEEEEEEeecCCCCCeEEE
Q psy14540 12 QTLQPGPPVSLKCIATGNPTPHISWKLDGYPL-A--GDRFVM----------GQYMSLHGDVISHVNISSVRVEDSGIYQ 78 (291)
Q Consensus 12 ~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~-~--~~~~~~----------~~~~~~~~~~~~~l~i~~~~~~d~G~y~ 78 (291)
+.+.+|++++|+|.+.+.+.+.+.|+++++.. . ...... .......+.+.+.|+|.+++.+|+|.|.
T Consensus 2 v~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~ 81 (94)
T cd07690 2 VLGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYI 81 (94)
T ss_pred eEeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEE
Confidence 45789999999999998888899999766332 1 111100 0001112345688999999999999999
Q ss_pred EEEeCCCC
Q psy14540 79 CTATNRVG 86 (291)
Q Consensus 79 C~~~~~~~ 86 (291)
|.+.+..+
T Consensus 82 C~v~~~~~ 89 (94)
T cd07690 82 CEVEDKKE 89 (94)
T ss_pred EEECCccc
Confidence 99986543
No 171
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=99.29 E-value=2e-11 Score=75.75 Aligned_cols=76 Identities=25% Similarity=0.512 Sum_probs=50.7
Q ss_pred CCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCC
Q psy14540 112 NSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDN 191 (291)
Q Consensus 112 ~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~ 191 (291)
.+....+.+|+.++|.|.+..+.|.+.+.|++++..+.... . .....|.|..+..+|+|.|.|.+.|..|...
T Consensus 7 ~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~~----~---~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~ 79 (85)
T cd05754 7 EPRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSRA----M---DFNGILTIRNVQLSDAGTYVCTGSNMLDTDE 79 (85)
T ss_pred CCCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCcc----c---ccCCEEEECCCCHHHCEEEEEEEeccCCeEe
Confidence 34557788999999999985457889999999886543211 0 1123566666666666666666666665544
Q ss_pred Cce
Q psy14540 192 HSS 194 (291)
Q Consensus 192 ~~~ 194 (291)
...
T Consensus 80 ~~~ 82 (85)
T cd05754 80 ATA 82 (85)
T ss_pred EEE
Confidence 433
No 172
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=99.29 E-value=2.9e-11 Score=75.44 Aligned_cols=77 Identities=26% Similarity=0.308 Sum_probs=57.6
Q ss_pred eeeeecCCcEEEEEEecC-----CCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCC
Q psy14540 11 QQTLQPGPPVSLKCIATG-----NPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRV 85 (291)
Q Consensus 11 ~~~v~~g~~v~l~C~~~~-----~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~ 85 (291)
.+.+.+|+++.|.|...+ .+.+.+.|+|++.++........ ....|.|.+++.+|+|.|+|.+.+..
T Consensus 4 ~~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~~~--------~~~~L~I~~v~~~DsG~YtC~~~n~~ 75 (92)
T cd05757 4 KQILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKRFV--------KGSKLLIQNVTEEDAGNYTCKLTFTH 75 (92)
T ss_pred eEEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccEEe--------cCCEEEEeeCChhhCEEEEEEEEecC
Confidence 356889999999998754 25778999999998874432221 12469999999999999999999877
Q ss_pred CceeeeeeEE
Q psy14540 86 GSQTHSADMR 95 (291)
Q Consensus 86 ~~~~~~~~l~ 95 (291)
+.....+...
T Consensus 76 ~~~~~~~t~t 85 (92)
T cd05757 76 NGKQYNVTRT 85 (92)
T ss_pred CCEEEEEEEE
Confidence 6654444333
No 173
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.28 E-value=1.3e-11 Score=77.56 Aligned_cols=72 Identities=21% Similarity=0.300 Sum_probs=42.9
Q ss_pred eeecCCCceEEEEEeeCC-----CCCceeEEeECCEeccCCC--ceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCC
Q psy14540 116 IKVHSGDRAGVQCLVTKG-----DPPLTISWLKNGLPILSDA--EITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVA 188 (291)
Q Consensus 116 ~~~~~g~~~~l~C~~~~~-----~p~~~~~W~~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~ 188 (291)
..+.+|+.+.|.|.+ .+ .|.+.+.|||++..+.... ...+.. ....|.|..+..+|+|.|+|.+.|..|
T Consensus 9 ~~v~~G~~~~L~C~~-~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~---~~~~L~I~~~~~~DsG~Y~C~~~N~~g 84 (94)
T cd05756 9 SYVLEGEPVVIKCPL-FYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQ---QKDLLWFLPAALEDSGLYTCVVRNSTY 84 (94)
T ss_pred EEEecCCCeEEECCC-CCcccccCCCceEEEEEcCCCCcccccccceeee---cCCeEEEccCCcccCeEEEEEEcCCCc
Confidence 456689999999998 45 6888999999986543211 111111 122455555555555555555555444
Q ss_pred CCC
Q psy14540 189 SDN 191 (291)
Q Consensus 189 ~~~ 191 (291)
...
T Consensus 85 ~~~ 87 (94)
T cd05756 85 CMK 87 (94)
T ss_pred cEE
Confidence 433
No 174
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.28 E-value=1.3e-11 Score=75.99 Aligned_cols=24 Identities=42% Similarity=0.844 Sum_probs=21.6
Q ss_pred CCceEEEEEeeCCCCCceeEEeECC
Q psy14540 121 GDRAGVQCLVTKGDPPLTISWLKNG 145 (291)
Q Consensus 121 g~~~~l~C~~~~~~p~~~~~W~~~~ 145 (291)
|+.+.|.|.+ .|.|.|.+.|++++
T Consensus 1 G~~v~l~C~~-~g~P~p~v~W~k~~ 24 (81)
T cd05765 1 GETASFHCDV-TGRPPPEITWEKQV 24 (81)
T ss_pred CCcEEEEeec-cccCCCcEEEEecC
Confidence 6889999998 79999999999974
No 175
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=99.28 E-value=3.7e-11 Score=74.28 Aligned_cols=81 Identities=23% Similarity=0.339 Sum_probs=57.4
Q ss_pred CCcEEEEEEecCCC--CCeeEEEECCeecCCCeeEe--ceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCceeeee
Q psy14540 17 GPPVSLKCIATGNP--TPHISWKLDGYPLAGDRFVM--GQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQTHSA 92 (291)
Q Consensus 17 g~~v~l~C~~~~~~--~~~v~W~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~ 92 (291)
|+++.|.|.+.+.+ ...+.|..+++......... ...........+.|.|.+++..|+|.|+|.+.+..+.....+
T Consensus 1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t 80 (86)
T cd05862 1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKNST 80 (86)
T ss_pred CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEecccE
Confidence 78999999998644 45789998776443111000 001111234568899999999999999999998888777788
Q ss_pred eEEEE
Q psy14540 93 DMRVY 97 (291)
Q Consensus 93 ~l~v~ 97 (291)
.|.|+
T Consensus 81 ~~~V~ 85 (86)
T cd05862 81 IVIVH 85 (86)
T ss_pred EEEEe
Confidence 77775
No 176
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.27 E-value=1.4e-11 Score=75.20 Aligned_cols=74 Identities=31% Similarity=0.490 Sum_probs=49.0
Q ss_pred EEEEEEecCCCCCeeEEEECCeecC-CCeeE--eceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCce-eeeeeEE
Q psy14540 20 VSLKCIATGNPTPHISWKLDGYPLA-GDRFV--MGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQ-THSADMR 95 (291)
Q Consensus 20 v~l~C~~~~~~~~~v~W~~~~~~~~-~~~~~--~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~-~~~~~l~ 95 (291)
++|.|.+.+.|.|.+.|++++.... ..... ......... ..+|.|.+++.+|+|.|+|.+.|..|.. ++.+.|+
T Consensus 1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~--~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l~ 78 (79)
T cd05734 1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLS--NGSLLIKHVLEEDSGYYLCKVSNDVGADASKSMVLT 78 (79)
T ss_pred CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEEec--CCeEEECcCCcccCEEEEEEEEeCCCCCCceEEEEe
Confidence 5799999999999999999643221 10000 000001111 2469999999999999999999988865 4444443
No 177
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.27 E-value=6e-11 Score=74.47 Aligned_cols=64 Identities=23% Similarity=0.414 Sum_probs=43.4
Q ss_pred CCceEEEEEeeCCCCCceeEEeECCEeccCC-CceEEeccCCceEEEEEeeCC-CCCceeEEEEEEecCCCC
Q psy14540 121 GDRAGVQCLVTKGDPPLTISWLKNGLPILSD-AEITIRSSGEYTSSLSIATLS-TGHSGNYTCVASNTVASD 190 (291)
Q Consensus 121 g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~-~~d~g~y~C~~~~~~~~~ 190 (291)
|..+.|.|.+ .|.|.|.++|++++..+... .+.... ...|.|..+. ..|.|.|.|.|.|..|..
T Consensus 19 ~~~v~l~C~a-~G~P~P~i~W~k~~~~i~~~~~~~~~~-----~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~ 84 (93)
T cd05849 19 EGKVSVNCRA-RANPFPIYKWRKNNLDIDLTNDRYSMV-----GGNLVINNPDKYKDAGRYVCIVSNIYGKV 84 (93)
T ss_pred CCeEEEeCcC-ccCCCCEEEEEECCEEccCCCCeEEEE-----CCEEEECcCCcCCCCEEEEEEEEeCcceE
Confidence 4579999999 79999999999999887532 222211 2346666553 466666666666666643
No 178
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=99.26 E-value=7.8e-11 Score=72.19 Aligned_cols=67 Identities=19% Similarity=0.396 Sum_probs=50.4
Q ss_pred cceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCC-ceEEeccCCceEEEEEeeCCCCCceeEEEEEEecC
Q psy14540 114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDA-EITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTV 187 (291)
Q Consensus 114 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 187 (291)
....+..|+++.|.|.+ . .+.+.+.|++||.++.... +..+. ...|.|.+++.+|+|.|+|.+.+..
T Consensus 4 ~~~~v~~G~~v~L~C~~-~-~~~~~i~W~~ng~~i~~~~~r~~~~-----~~~L~I~nv~~~DsG~Y~C~a~e~~ 71 (87)
T cd05873 4 RQRTFKLGNNAELKCSP-K-SNLARVVWKFDGKVLTPESAKYLLY-----RDGLLIFNASEADAGRYQCLSVEKS 71 (87)
T ss_pred ceEEEECCCCEEEEEEC-C-CCCCeEEEEECCEECCCCCceEEEE-----CCcEEEeCCCHHHCEEEEEEEEecc
Confidence 45678899999999997 3 3678999999999987653 33222 2347888888888888888887653
No 179
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=99.25 E-value=1.4e-10 Score=73.50 Aligned_cols=81 Identities=22% Similarity=0.333 Sum_probs=55.1
Q ss_pred ceeeeecCCcEEEEEEecCCCCCeeEEEECCeec---------CCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEE
Q psy14540 10 IQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPL---------AGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCT 80 (291)
Q Consensus 10 ~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~---------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~ 80 (291)
..+.+.+|++++|.|.+.+.+.+.+.|++.+..+ ...++.. .......+.|.|.+++.+|+|.|+|.
T Consensus 5 ~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~----~~~~~~~~~L~I~~v~~~DsG~Y~C~ 80 (95)
T cd05717 5 QDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQL----VNFSANELSISISNVSLSDEGRYTCS 80 (95)
T ss_pred CcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEE----EcCCCCeeEEEEccCCcccCEEEEEE
Confidence 4567999999999999988777899998633221 1112111 11123446799999999999999999
Q ss_pred EeCCCCceeeeeeEE
Q psy14540 81 ATNRVGSQTHSADMR 95 (291)
Q Consensus 81 ~~~~~~~~~~~~~l~ 95 (291)
+..... ....+.|+
T Consensus 81 ~~~~~~-~~~~~~~~ 94 (95)
T cd05717 81 LYTMPV-QTAKATVT 94 (95)
T ss_pred EecCCC-ceEEEEEE
Confidence 885442 34444443
No 180
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=99.24 E-value=7.1e-11 Score=71.40 Aligned_cols=62 Identities=27% Similarity=0.545 Sum_probs=39.1
Q ss_pred eEEEEEeeCCCCCceeEEeECCEeccC--CCceEEeccCCceEEEEEeeCC----CCCceeEEEEEEecCCC
Q psy14540 124 AGVQCLVTKGDPPLTISWLKNGLPILS--DAEITIRSSGEYTSSLSIATLS----TGHSGNYTCVASNTVAS 189 (291)
Q Consensus 124 ~~l~C~~~~~~p~~~~~W~~~~~~~~~--~~~~~~~~~~~~~~~l~i~~~~----~~d~g~y~C~~~~~~~~ 189 (291)
+.|.|.+ .|.|.|.++|++++..+.. ..+..... ....|.|..+. .+|.|.|+|.|.|..|.
T Consensus 1 ~~l~C~~-~G~P~P~v~W~k~g~~~~~~~~~~~~~~~---~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~ 68 (77)
T cd05875 1 IIIECEA-KGNPVPTFQWTRNGKFFNVAKDPRVSMRR---RSGTLVIDFSGGGRPEDYEGEYQCFARNNLGT 68 (77)
T ss_pred CEEEEec-cccCCCEEEEEECCEEccCcCCCcEEEeC---CCceEEEeccCCCCCCCCCEEEEEEEEeccce
Confidence 4689999 7999999999999987643 22222211 12345555442 23466666666666653
No 181
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=99.24 E-value=6.6e-11 Score=73.84 Aligned_cols=73 Identities=19% Similarity=0.279 Sum_probs=50.6
Q ss_pred eeecCCCceEEEEEeeCC----CCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCC
Q psy14540 116 IKVHSGDRAGVQCLVTKG----DPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDN 191 (291)
Q Consensus 116 ~~~~~g~~~~l~C~~~~~----~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~ 191 (291)
..+.+|....|.|....+ +|.+.+.|++++.++........ ....|.|..+..+|+|.|+|.+.|..+...
T Consensus 5 ~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~~~-----~~~~L~I~~v~~~DsG~YtC~~~n~~~~~~ 79 (92)
T cd05757 5 QILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKRFV-----KGSKLLIQNVTEEDAGNYTCKLTFTHNGKQ 79 (92)
T ss_pred EEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccEEe-----cCCEEEEeeCChhhCEEEEEEEEecCCCEE
Confidence 456789999999986433 36789999999998865443221 234577777777777777777777665544
Q ss_pred Cc
Q psy14540 192 HS 193 (291)
Q Consensus 192 ~~ 193 (291)
.+
T Consensus 80 ~~ 81 (92)
T cd05757 80 YN 81 (92)
T ss_pred EE
Confidence 43
No 182
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=99.23 E-value=3.6e-11 Score=73.87 Aligned_cols=79 Identities=34% Similarity=0.667 Sum_probs=57.1
Q ss_pred CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEE
Q psy14540 2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTA 81 (291)
Q Consensus 2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~ 81 (291)
+|.+...+ ..+.+|+.+.|.|.+.+.|...+.|++++..+.... +. +.+.+++.+|.|.|+|.+
T Consensus 1 kP~l~~~~--~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~-----------~~---~~~~~~~~~~~g~y~C~~ 64 (80)
T PF13895_consen 1 KPVLSSSP--QSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINSSQ-----------NG---LFIPNVSPEDSGNYTCRA 64 (80)
T ss_dssp --EEEEES--SEEETTSEEEEEEEEESSSSSEEEEEETTEEEEEES-----------SE---EEESSEEGGGTEEEEEEE
T ss_pred CcEEEccc--eEEeCCCcEEEEEEEEcccceeeeeeeeeeeeeeee-----------ee---eeeeeeccccCEEEEEEE
Confidence 47666555 569999999999999988888999999887655110 00 557888999999999999
Q ss_pred eCCCC-ceeeeeeEEE
Q psy14540 82 TNRVG-SQTHSADMRV 96 (291)
Q Consensus 82 ~~~~~-~~~~~~~l~v 96 (291)
.+..+ ..+..+.|.|
T Consensus 65 ~~~~~~~~s~~~~v~V 80 (80)
T PF13895_consen 65 SNGSGSNTSTSVNVTV 80 (80)
T ss_dssp EETTEEEEEEEEEEEE
T ss_pred EeCCCCeEeeeEEeeC
Confidence 87443 3444555443
No 183
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.23 E-value=6.5e-11 Score=71.55 Aligned_cols=64 Identities=30% Similarity=0.533 Sum_probs=38.1
Q ss_pred eEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCC----CCceeEEEEEEecCCC
Q psy14540 124 AGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLST----GHSGNYTCVASNTVAS 189 (291)
Q Consensus 124 ~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~----~d~g~y~C~~~~~~~~ 189 (291)
+.|.|.+ .|.|.|+++|++++.++........... ...+.|.|..+.. .|.|.|+|.|.|..|.
T Consensus 1 ~~l~C~a-~G~P~P~i~W~k~g~~l~~~~~~~~~~~-~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~ 68 (77)
T cd05874 1 IVIQCEA-KGKPPPSFSWTRNGTHFDIDKDPKVTMK-PNTGTLVINIMNGEKAEAYEGVYQCTARNERGA 68 (77)
T ss_pred CEEEeeC-cccCCCeEEEEECCeECCCcCCCCEEEe-CCCceEEEeccccCCCCCCCEEEEEEEEcCCCe
Confidence 4799999 7999999999999988743222111111 1123455544432 2456666666665554
No 184
>PHA03376 BARF1; Provisional
Probab=99.23 E-value=4.7e-10 Score=76.48 Aligned_cols=129 Identities=16% Similarity=0.170 Sum_probs=75.1
Q ss_pred ceeeeecCCcEEEEEEecC---CCCCeeEEEECCe----ec-C-CC------eeEec-eEEeeccceEEEEEEeecCCCC
Q psy14540 10 IQQTLQPGPPVSLKCIATG---NPTPHISWKLDGY----PL-A-GD------RFVMG-QYMSLHGDVISHVNISSVRVED 73 (291)
Q Consensus 10 ~~~~v~~g~~v~l~C~~~~---~~~~~v~W~~~~~----~~-~-~~------~~~~~-~~~~~~~~~~~~l~i~~~~~~d 73 (291)
.++++..|+.+.|+|.... .....|.|+|.+. .+ . .. .+... ......+.+..+|.|.+++.+|
T Consensus 19 ~pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSD 98 (221)
T PHA03376 19 QAVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISH 98 (221)
T ss_pred cchhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecC
Confidence 3567889999999999862 3456799999432 11 1 10 11111 1111122366889999999999
Q ss_pred CeEEEEEEeCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCE
Q psy14540 74 SGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGL 146 (291)
Q Consensus 74 ~G~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~ 146 (291)
.|.|+|.+........+.--|.+..+-.. .. .. .......-+...+.|.+ +|+|.|.+.|.-+..
T Consensus 99 dGtY~C~fQkge~~~~k~ehLt~V~~~~L-----sv-~a-~~~dFp~~~~~~i~C~s-ggfP~P~~~Wle~~~ 163 (221)
T PHA03376 99 DGNYLCRMKLGETEVTKQEHLSVVKPLTL-----SV-HS-ERSQFPDFSVLTVTCTV-NAFPHPHVQWLMPEG 163 (221)
T ss_pred CceEEEEEEcCCCceeeeeeeeeeecceE-----EE-Ee-ccccCCCCCeeEEEEec-CCcCCchheeccccC
Confidence 99999999854433333222322221100 00 00 00000013456899995 999999999987543
No 185
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=99.23 E-value=1.9e-10 Score=72.55 Aligned_cols=30 Identities=20% Similarity=0.515 Sum_probs=26.0
Q ss_pred cceeecCCCceEEEEEeeCCCCCceeEEeEC
Q psy14540 114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKN 144 (291)
Q Consensus 114 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~ 144 (291)
..+.+.+|+.+.|.|.+ .+.|.+.+.|++.
T Consensus 5 ~~v~v~eG~~v~L~C~~-~~~p~~~v~W~~~ 34 (95)
T cd07701 5 QNVTVVEGGTANLTCRV-DQNDNTSLQWSNP 34 (95)
T ss_pred ceEEEecCCcEEEEEEE-ecCCceEEEEeCC
Confidence 45788899999999999 6889999999863
No 186
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.23 E-value=9.2e-11 Score=71.99 Aligned_cols=64 Identities=22% Similarity=0.334 Sum_probs=42.1
Q ss_pred eeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCC
Q psy14540 116 IKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVA 188 (291)
Q Consensus 116 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~ 188 (291)
..+.+|+.++|.|.+..+.+.+.+.|++++..+... .....|.|..+..+|+|.|+|.+.+..+
T Consensus 9 ~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~~---------~~~~~l~I~~~~~~dsG~Y~C~~~~~~~ 72 (83)
T cd05753 9 RVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKYS---------HSNSNLSIPQATLSDSGSYHCSGIIGSY 72 (83)
T ss_pred ceecCCCCEEEEeeCCCCCcceEEEEEECCeEcccc---------CCCceEEECccCHHHCEEEEEEEEeCCc
Confidence 468899999999998555677889999998765311 1123455555555555555555555443
No 187
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=99.22 E-value=6e-11 Score=73.38 Aligned_cols=81 Identities=22% Similarity=0.393 Sum_probs=48.9
Q ss_pred CCceEEEEEeeCCC--CCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEE
Q psy14540 121 GDRAGVQCLVTKGD--PPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRV 198 (291)
Q Consensus 121 g~~~~l~C~~~~~~--p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~ 198 (291)
|+.+.|.|.+ .+. |.+.+.|++++..+......... .....+
T Consensus 1 Ge~~~L~C~~-~g~~~~~~~i~W~~~~~~~~~~~~~~~~------------~~~~~~----------------------- 44 (84)
T cd05742 1 GETLVLNCTV-LTELNEGVDFQWTYPGKKRGRGKSMVTR------------QSLSEA----------------------- 44 (84)
T ss_pred CCeEEEEEEE-EeCCCccEEEEEecCCcccCCceEeecc------------cccccc-----------------------
Confidence 6889999999 577 88999999887654322110000 000000
Q ss_pred eccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEE
Q psy14540 199 NEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRV 237 (291)
Q Consensus 199 ~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v 237 (291)
....+.|.|.++...|+|.|+|.|.|..+..+.+..|.|
T Consensus 45 ~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~v~v 83 (84)
T cd05742 45 TELSSTLTIPNATLKDSGTYTCAASSGTMDQKESTKVNI 83 (84)
T ss_pred eEEEEEEEECCCChhhCEEEEEEEccCCCceEEEEEEEE
Confidence 001345667777777777777777777766666666655
No 188
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=99.21 E-value=9.4e-11 Score=71.03 Aligned_cols=64 Identities=28% Similarity=0.521 Sum_probs=46.1
Q ss_pred EEEEEEecCCCCCeeEEEECCeecCCC-eeEeceEEeeccceEEEEEEeecCC----CCCeEEEEEEeCCCCce
Q psy14540 20 VSLKCIATGNPTPHISWKLDGYPLAGD-RFVMGQYMSLHGDVISHVNISSVRV----EDSGIYQCTATNRVGSQ 88 (291)
Q Consensus 20 v~l~C~~~~~~~~~v~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~----~d~G~y~C~~~~~~~~~ 88 (291)
++|.|.+.|.|.|.++|+|++..+... .... .... ....|.|.++.. +|+|.|+|.+.|..|..
T Consensus 1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~---~~~~--~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~ 69 (77)
T cd05733 1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRV---TMKP--DSGTLVIDNMNGGRAEDYEGEYQCYASNELGTA 69 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCCCCCCE---EEeC--CCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcE
Confidence 579999999999999999999887521 1111 0111 124577887754 68999999999988864
No 189
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=99.20 E-value=3.3e-10 Score=67.88 Aligned_cols=67 Identities=12% Similarity=0.305 Sum_probs=47.7
Q ss_pred eEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccce
Q psy14540 124 AGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTS 203 (291)
Q Consensus 124 ~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~ 203 (291)
++|+|....++|++.++||+++.++..... ...+.+.|+ ..+
T Consensus 2 ~~L~C~s~~skP~a~i~W~k~~~~l~~~~~------------------~~~~~~~~t--------------------~~s 43 (80)
T cd05885 2 VELTCLSPRSKPAATLRWYRDRKELKGVIS------------------QQENGKTVS--------------------VSN 43 (80)
T ss_pred EEEEEeCCCccCCCeEEEEECCEECCCCcc------------------cccCCceEE--------------------EEE
Confidence 689999989999999999999999854211 001122222 135
Q ss_pred EEEEeeeecCCCeeEEEEeeeCCcc
Q psy14540 204 SLSIATLSTGHSGNYTCVASNTVAS 228 (291)
Q Consensus 204 ~l~i~~~~~~~~g~y~C~~~~~~~~ 228 (291)
+|.|.....+|++.|+|+|.|..+.
T Consensus 44 ~L~~~~~~~Ddg~~~~C~A~n~a~~ 68 (80)
T cd05885 44 TIRFPVDRKDDGAILSCEASHPALV 68 (80)
T ss_pred EEEEEeeeccCCcEEEEEEEChhhC
Confidence 6778888888888888888887743
No 190
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=99.20 E-value=3.4e-10 Score=70.63 Aligned_cols=83 Identities=14% Similarity=0.280 Sum_probs=54.9
Q ss_pred eeeeecCCcEEEEEEecCCCCCeeEEEECCe--ecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEe-CCCCc
Q psy14540 11 QQTLQPGPPVSLKCIATGNPTPHISWKLDGY--PLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTAT-NRVGS 87 (291)
Q Consensus 11 ~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~-~~~~~ 87 (291)
.+.+.+|+++.|.|... .|.+.+.|++.+. ..... ......... ....|.|.+++.+|+|.|+|.+. +..+.
T Consensus 5 ~~~~~eG~~v~L~C~~~-~p~p~v~Wykq~~g~~~~~~-~~~~~r~~~---~~~~L~I~~~~~~DsG~Y~C~a~~~~~~~ 79 (91)
T cd05871 5 VVYGVENNSTFLECLPK-SPQASVKWLFQRGGDQRKEE-VKTEERLIH---TERGLLLRSLQRSDAGVYTCTAVEHSFSQ 79 (91)
T ss_pred EEEEecCCcEEEEEECC-CCCceEEEEEECCCCCcccc-ccccccEEE---ecCeEEEeeCChhHCEEEEEEEEccCCeE
Confidence 35688999999999964 7888999998432 21110 000001111 11449999999999999999997 45555
Q ss_pred eeeeeeEEEEc
Q psy14540 88 QTHSADMRVYD 98 (291)
Q Consensus 88 ~~~~~~l~v~~ 98 (291)
....+.|.|..
T Consensus 80 ~~~~~~l~v~~ 90 (91)
T cd05871 80 TLAKYTLHVIE 90 (91)
T ss_pred EEEEEEEEEec
Confidence 55666777653
No 191
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.19 E-value=1.5e-10 Score=71.92 Aligned_cols=71 Identities=27% Similarity=0.462 Sum_probs=50.5
Q ss_pred ceeecCCCceEEEEEeeCCCCCceeEEeECCEecc--CCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCC
Q psy14540 115 SIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPIL--SDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVA 188 (291)
Q Consensus 115 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~--~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~ 188 (291)
...+.+|+.+.|.|....+.|.+.+.|++++.++. .+.+..... ..+.|.+.++..+|.|.|.|.|.|...
T Consensus 12 ~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~~---~~G~L~fs~v~~~D~g~Y~C~A~n~~~ 84 (96)
T cd05727 12 EVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVSQ---TNGNLYIAKVEASDRGNYSCFVSSPSS 84 (96)
T ss_pred ceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEeC---CCCcEEEeecCHhhCceeEEEEEeccc
Confidence 36688999999999988899999999999986542 222222221 234677777777777777777777554
No 192
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=99.18 E-value=9.5e-10 Score=68.33 Aligned_cols=82 Identities=37% Similarity=0.650 Sum_probs=61.3
Q ss_pred ceeeeecCCcEEEEEEecCCCCCeeEEEEC-CeecC-CCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCc
Q psy14540 10 IQQTLQPGPPVSLKCIATGNPTPHISWKLD-GYPLA-GDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGS 87 (291)
Q Consensus 10 ~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~-~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~ 87 (291)
....+..|+++.|.|.+.+.+.+.+.|+++ +..+. ....... .......|.|.+++..|+|.|.|.+.+..+.
T Consensus 2 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~-----~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~ 76 (86)
T smart00410 2 PSVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVS-----RSGSNSTLTISNVTPEDSGTYTCAATNSSGS 76 (86)
T ss_pred CcEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEE-----EcCCeeEEEEEeeccccCeEEEEEEEcCCCe
Confidence 346788999999999999877889999998 77665 3333221 1222567999999999999999999976666
Q ss_pred eeeeeeEEE
Q psy14540 88 QTHSADMRV 96 (291)
Q Consensus 88 ~~~~~~l~v 96 (291)
....+.|.|
T Consensus 77 ~~~~~~l~V 85 (86)
T smart00410 77 ASSTTTLTV 85 (86)
T ss_pred EEEEEEEEE
Confidence 555555544
No 193
>smart00409 IG Immunoglobulin.
Probab=99.18 E-value=9.5e-10 Score=68.33 Aligned_cols=82 Identities=37% Similarity=0.650 Sum_probs=61.3
Q ss_pred ceeeeecCCcEEEEEEecCCCCCeeEEEEC-CeecC-CCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCc
Q psy14540 10 IQQTLQPGPPVSLKCIATGNPTPHISWKLD-GYPLA-GDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGS 87 (291)
Q Consensus 10 ~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~-~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~ 87 (291)
....+..|+++.|.|.+.+.+.+.+.|+++ +..+. ....... .......|.|.+++..|+|.|.|.+.+..+.
T Consensus 2 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~-----~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~ 76 (86)
T smart00409 2 PSVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVS-----RSGSNSTLTISNVTPEDSGTYTCAATNSSGS 76 (86)
T ss_pred CcEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEE-----EcCCeeEEEEEeeccccCeEEEEEEEcCCCe
Confidence 346788999999999999877889999998 77665 3333221 1222567999999999999999999976666
Q ss_pred eeeeeeEEE
Q psy14540 88 QTHSADMRV 96 (291)
Q Consensus 88 ~~~~~~l~v 96 (291)
....+.|.|
T Consensus 77 ~~~~~~l~V 85 (86)
T smart00409 77 ASSTTTLTV 85 (86)
T ss_pred EEEEEEEEE
Confidence 555555544
No 194
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=99.18 E-value=5.6e-10 Score=70.12 Aligned_cols=33 Identities=18% Similarity=0.365 Sum_probs=28.1
Q ss_pred cceeecCCCceEEEEEeeCCCCCceeEEeECCEe
Q psy14540 114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLP 147 (291)
Q Consensus 114 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~ 147 (291)
....+.+|+.+.|.|.+ .+.|.+.+.|++++..
T Consensus 5 ~~~tv~~G~tv~L~C~v-~g~~~~~v~W~k~~~~ 37 (95)
T cd05882 5 QDETVAVGGTVTLKCGV-KEHDNSSLQWSNTAQQ 37 (95)
T ss_pred ccEEEecCCcEEEEEEE-eCCCCCeEEEeccCcc
Confidence 34678899999999999 6888999999997754
No 195
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.18 E-value=1.9e-10 Score=69.48 Aligned_cols=67 Identities=27% Similarity=0.498 Sum_probs=45.4
Q ss_pred EEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCC----CCCeEEEEEEeCCCCceee
Q psy14540 20 VSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRV----EDSGIYQCTATNRVGSQTH 90 (291)
Q Consensus 20 v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~----~d~G~y~C~~~~~~~~~~~ 90 (291)
+.|.|.+.|.|.|.++|++++..+...... ........ .+|.|..+.. .|.|.|+|.+.|..|....
T Consensus 1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~~--~~~~~~~~--g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05874 1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDP--KVTMKPNT--GTLVINIMNGEKAEAYEGVYQCTARNERGAAVS 71 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCcCCC--CEEEeCCC--ceEEEeccccCCCCCCCEEEEEEEEcCCCeEEe
Confidence 579999999999999999999887411100 01111112 3466666653 3789999999998886443
No 196
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=99.17 E-value=2.4e-10 Score=71.50 Aligned_cols=35 Identities=23% Similarity=0.480 Sum_probs=28.5
Q ss_pred cceeecCCCceEEEEEeeCCCCCceeEEeECCEeccC
Q psy14540 114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILS 150 (291)
Q Consensus 114 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~ 150 (291)
..+.+.+|+.+.|.|.+ .+ |.+.+.|++++..+..
T Consensus 4 ~~~~v~~g~~v~L~C~~-~~-p~~~i~W~k~~~~~~~ 38 (89)
T cd04979 4 KVVTVVEGNSVFLECSP-KS-NLASVVWLFQGGPLQR 38 (89)
T ss_pred eEEEEECCCcEEEEEeC-CC-CCceEEEEECCccccc
Confidence 34677899999999998 45 7789999999876643
No 197
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=99.17 E-value=5.6e-10 Score=69.62 Aligned_cols=70 Identities=20% Similarity=0.242 Sum_probs=52.0
Q ss_pred ceeeeecCCcEEEEEEecCCCCCeeEEEECCeec---------CCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEE
Q psy14540 10 IQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPL---------AGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCT 80 (291)
Q Consensus 10 ~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~---------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~ 80 (291)
.++++.+|++++|.|.+.+.....+.|++.+..+ .+.++... .......+|.|.+++.+|+|.|.|.
T Consensus 5 ~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~----~~~~~~~tL~I~~vq~~D~G~Y~Cq 80 (95)
T cd05881 5 EDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLV----NFSSNELRVSLSNVSLSDEGRYFCQ 80 (95)
T ss_pred CceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEE----eCCCCEEEEEECcCCcccCEEEEEE
Confidence 4578999999999999998666678999866432 12233221 1134567899999999999999999
Q ss_pred EeC
Q psy14540 81 ATN 83 (291)
Q Consensus 81 ~~~ 83 (291)
+..
T Consensus 81 v~t 83 (95)
T cd05881 81 LYT 83 (95)
T ss_pred EEc
Confidence 874
No 198
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=99.17 E-value=5e-10 Score=68.99 Aligned_cols=26 Identities=31% Similarity=0.714 Sum_probs=22.5
Q ss_pred CCceEEEEEeeCCCCCceeEEeECCEe
Q psy14540 121 GDRAGVQCLVTKGDPPLTISWLKNGLP 147 (291)
Q Consensus 121 g~~~~l~C~~~~~~p~~~~~W~~~~~~ 147 (291)
|++++|.|.+ .+.|.+.+.|++.++.
T Consensus 1 Ge~~~l~C~~-~~~~~~~~~W~~~~~~ 26 (84)
T cd05861 1 GETITVNCIV-QGNEVVDFSWTYPGKD 26 (84)
T ss_pred CCcEEEEEEE-ECCCccEEEEEECCcc
Confidence 7889999999 6788899999987754
No 199
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=99.17 E-value=7.7e-10 Score=69.41 Aligned_cols=85 Identities=22% Similarity=0.381 Sum_probs=49.2
Q ss_pred cCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCC--CceEEecc---CCceEEEEEeeCCCCC-ceeEEEEEE
Q psy14540 111 SNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSD--AEITIRSS---GEYTSSLSIATLSTGH-SGNYTCVAS 184 (291)
Q Consensus 111 ~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~--~~~~~~~~---~~~~~~l~i~~~~~~d-~g~y~C~~~ 184 (291)
.......+.+|+.+.|.|.+....++..+.|.+++..+... .++.+... ....+.|.|.++...| .|.|.|.|.
T Consensus 6 ~~~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y~C~a~ 85 (98)
T cd05898 6 SSEQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHYNCTAW 85 (98)
T ss_pred ecCceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEEEEEEE
Confidence 33455778899999999999434444578998887765443 23333221 1223455555554433 455555555
Q ss_pred ecCCCCCCceE
Q psy14540 185 NTVASDNHSSN 195 (291)
Q Consensus 185 ~~~~~~~~~~~ 195 (291)
|..|.....++
T Consensus 86 N~~G~d~~~i~ 96 (98)
T cd05898 86 NSFGSGTAIIQ 96 (98)
T ss_pred eCCccceEEEE
Confidence 55555544433
No 200
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=99.17 E-value=3.4e-10 Score=68.43 Aligned_cols=63 Identities=29% Similarity=0.536 Sum_probs=45.4
Q ss_pred EEEEEEecCCCCCeeEEEECCeecC---CCeeEeceEEeeccceEEEEEEeecC----CCCCeEEEEEEeCCCCcee
Q psy14540 20 VSLKCIATGNPTPHISWKLDGYPLA---GDRFVMGQYMSLHGDVISHVNISSVR----VEDSGIYQCTATNRVGSQT 89 (291)
Q Consensus 20 v~l~C~~~~~~~~~v~W~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~i~~~~----~~d~G~y~C~~~~~~~~~~ 89 (291)
+.|.|.+.|.|.|.++|+|++..+. ..++.. .... .+|.|.++. ..|+|.|+|.+.|..|...
T Consensus 1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~-----~~~~--~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~ 70 (77)
T cd05875 1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSM-----RRRS--GTLVIDFSGGGRPEDYEGEYQCFARNNLGTAL 70 (77)
T ss_pred CEEEEeccccCCCEEEEEECCEEccCcCCCcEEE-----eCCC--ceEEEeccCCCCCCCCCEEEEEEEEeccceEE
Confidence 4799999999999999999998764 222221 1111 357787764 2469999999999988643
No 201
>KOG3515|consensus
Probab=99.17 E-value=1.3e-09 Score=90.87 Aligned_cols=267 Identities=16% Similarity=0.157 Sum_probs=159.0
Q ss_pred cceeeeecCCcEEEEEEecC-CCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCc
Q psy14540 9 FIQQTLQPGPPVSLKCIATG-NPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGS 87 (291)
Q Consensus 9 ~~~~~v~~g~~v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~ 87 (291)
+....+..|+...+.|...+ +|...+.|+++......................-.+........|.|.|+|.+.+....
T Consensus 307 t~~~~ls~g~s~r~~c~~sss~p~~~i~w~~~~~~~~~~~~~~~~t~~~~~v~~~~~~~q~~~~~~~g~v~c~a~~~~~~ 386 (741)
T KOG3515|consen 307 TSDSGLSSGRSARSSCVSSSSKPPAHIAWYKDTKMPKGSQKASSKTSNMGGVAVISHYAQPSSQQDGGQVTCPADNLELA 386 (741)
T ss_pred CcccccccccccccceeccCCCCccceeeeccCcccccccCcccCCCcccceeeEEeeecccchhcCceEEccccccccc
Confidence 34455888999999998765 78888999996554431111111111111122233445667788999999999876644
Q ss_pred eeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEE
Q psy14540 88 QTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLS 167 (291)
Q Consensus 88 ~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~ 167 (291)
...+....+...+.+. ............+++.....-.+....+.+.+.|.+++-.+............ ......
T Consensus 387 ~~sss~~~l~~l~~p~----~L~~~~~~v~~~e~d~~~~~~~~~~~p~~~~~~w~~~~~~~~~~~g~~~~v~~-~~~~~s 461 (741)
T KOG3515|consen 387 HSSSSSFLLPVLPSPA----FLVRHKTAVVAMEQDHQAAPLPVRGAPAERTFYWTFRLYKLSQVDGGVVRVGA-GAGLGS 461 (741)
T ss_pred cccccceeccccCCch----hhhhcccceeeccCccccccCcccCCCcccchhheecceecccccCceEEeec-cccccc
Confidence 3333333333322111 11111222333344444444444234456789999988777655442222111 122344
Q ss_pred EeeCCCCCceeEEEEEEecCCCCCCceEEE--------------------------------------------------
Q psy14540 168 IATLSTGHSGNYTCVASNTVASDNHSSNLR-------------------------------------------------- 197 (291)
Q Consensus 168 i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~-------------------------------------------------- 197 (291)
..++.+.|.|.|.|.+.|..|.......+.
T Consensus 462 ~~~v~~~d~g~y~~tatns~gg~~~~~~~~~~~sp~~~~~~~~~~~~~~ns~~~~~~q~~~~~~~~m~~~~r~ge~~~~~ 541 (741)
T KOG3515|consen 462 GVNVSRSDGGSYGLTATNSPGGAQAYLLLGVHTSPHNHHLQDQVEGATGNSVDGECMQDEQPQDQQMHHEPRSGEPPSDQ 541 (741)
T ss_pred cceeeeccCCcceeeeccCCCceeeEEeeccccCCcccccccccccCCCCcccceeeccccccchhhhcccccCCCCccc
Confidence 556889999999999999888665544422
Q ss_pred --------EeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCCCCCCCCccc---ccCCceEEEEEEeecC
Q psy14540 198 --------VNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGPFTFGE---LMEGVRTQVACVVQSG 266 (291)
Q Consensus 198 --------~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~---~~~g~~v~l~C~~~~~ 266 (291)
-......+.+.......++.|.|.+.+..........+.+..++.....+... ..-+..++..|.+ .+
T Consensus 542 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~pA~~~~~l~~~s~~~v~~~tp~~~~~~~g~v~as~~~~a-~~ 620 (741)
T KOG3515|consen 542 IDQDAPQQQLMAHAQLLVSGNSSLQASETACVVDGSSPPAGLSLVLKAYSALIVTVRTPNMYTAQEGCVNASDDCVA-SG 620 (741)
T ss_pred ccccccccccCCccceeecccccccccceEEeecCCCCccccceEEEecccccccccCCceeeeccCccccccccee-cc
Confidence 00115666666666777899999999843444445556666555555544433 2222389999977 99
Q ss_pred CCCceEEEEECCEEc
Q psy14540 267 DLPLSLQWYKNGLAI 281 (291)
Q Consensus 267 ~p~~~v~W~~~~~~l 281 (291)
.|.+.+.|-++....
T Consensus 621 ~~~~~~~~~k~p~~~ 635 (741)
T KOG3515|consen 621 VPSTSFTTAKTPLQT 635 (741)
T ss_pred cccceeecccCCCcc
Confidence 999999999997763
No 202
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=99.16 E-value=1.3e-09 Score=67.83 Aligned_cols=87 Identities=14% Similarity=0.210 Sum_probs=66.0
Q ss_pred eeeeecCCcEEEEEEecCCCCCe-eEEEECCeecCCCee-EeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCce
Q psy14540 11 QQTLQPGPPVSLKCIATGNPTPH-ISWKLDGYPLAGDRF-VMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQ 88 (291)
Q Consensus 11 ~~~v~~g~~v~l~C~~~~~~~~~-v~W~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~ 88 (291)
.+.|.+|+++.|.|.+.+.|.+. +.|.+++..+.+... ...........-.+.|.+..++.+|.|.|+|.+.|.....
T Consensus 12 ~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~~ 91 (101)
T cd05860 12 TIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDASA 91 (101)
T ss_pred eEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCeE
Confidence 45799999999999999999998 999998876652211 1111111112345889999999999999999999988888
Q ss_pred eeeeeEEEE
Q psy14540 89 THSADMRVY 97 (291)
Q Consensus 89 ~~~~~l~v~ 97 (291)
+..+.|.|.
T Consensus 92 s~tF~l~v~ 100 (101)
T cd05860 92 SVTFNVYVN 100 (101)
T ss_pred EEEEEEEEe
Confidence 877777764
No 203
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=99.16 E-value=2.4e-10 Score=66.47 Aligned_cols=62 Identities=42% Similarity=0.700 Sum_probs=48.0
Q ss_pred cCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCC
Q psy14540 16 PGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRV 85 (291)
Q Consensus 16 ~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~ 85 (291)
+|++++|.|.+.+.+.+.+.|++++..+.. ... .......|.|.+++..|+|.|+|.+.+..
T Consensus 1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~-~~~-------~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~ 62 (63)
T smart00408 1 EGQSVTLTCPAEGDPVPNITWLKDGKPLPE-SNR-------LSASGSTLTIKSVSLEDSGEYTCVAENSA 62 (63)
T ss_pred CCceEEEEeeCccCCCCeEEEEECCEECCC-CCE-------EecCCcEEEEeeCCcccCEEEEEEEecCC
Confidence 589999999987788889999999887661 110 01122469999999999999999998654
No 204
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.15 E-value=2e-10 Score=70.12 Aligned_cols=22 Identities=32% Similarity=0.644 Sum_probs=18.9
Q ss_pred eEEEEEeeCCCCCceeEEeECCE
Q psy14540 124 AGVQCLVTKGDPPLTISWLKNGL 146 (291)
Q Consensus 124 ~~l~C~~~~~~p~~~~~W~~~~~ 146 (291)
++|.|.+ .|.|.|.+.|++++.
T Consensus 1 v~l~C~~-~G~P~P~v~W~~~~~ 22 (79)
T cd05734 1 VTLNCSA-EGYPPPTIVWKHSKG 22 (79)
T ss_pred CEeEeeC-eEeCCCEEEEEECCC
Confidence 5799999 699999999999643
No 205
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=99.15 E-value=4.7e-10 Score=70.50 Aligned_cols=66 Identities=30% Similarity=0.585 Sum_probs=43.9
Q ss_pred CCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCC-CCCceeEEEEEEecCCC
Q psy14540 120 SGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLS-TGHSGNYTCVASNTVAS 189 (291)
Q Consensus 120 ~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~g~y~C~~~~~~~~ 189 (291)
.|..+.|.|.+ .|.|.+.++|++++..+........... ...|.|.++. ..|.|.|+|.|.|..|.
T Consensus 18 ~~~~~~l~C~~-~g~p~p~i~W~k~~~~l~~~~~~~~~~~---~~~L~i~~~~~~~d~G~Y~C~a~N~~G~ 84 (91)
T cd04967 18 DEGKVSLNCRA-RGSPPPTYRWLMNGTEIDDEPDSRYSLV---GGNLVISNPSKAKDAGRYQCLASNIVGT 84 (91)
T ss_pred CCCEEEEEEee-eEcCCCEEEEEECCEECCCCCCCCEEEE---CCEEEEecCCccCCCEEEEEEEEcCCCE
Confidence 44679999999 6889999999999988743222111111 2346666555 36777777777776663
No 206
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=99.14 E-value=4.1e-10 Score=65.73 Aligned_cols=63 Identities=30% Similarity=0.553 Sum_probs=44.8
Q ss_pred CCcEEEEEEe-cCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEE
Q psy14540 17 GPPVSLKCIA-TGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTA 81 (291)
Q Consensus 17 g~~v~l~C~~-~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~ 81 (291)
|++++|.|.+ ...+...+.|+++++......... ...........|.|.+++.+|+|.|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~--~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTN--RSTNSVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEE--EEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred CCeEEEEeecCCCCCCcEEEEEECCccccCcceeE--eecccceeeeEEEEccCCHHHCEEEEEEC
Confidence 7899999999 557788999999987655222111 11111112224999999999999999986
No 207
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.13 E-value=4.5e-10 Score=69.96 Aligned_cols=71 Identities=25% Similarity=0.341 Sum_probs=50.7
Q ss_pred eeeecCCcEEEEEEec-----CCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCC
Q psy14540 12 QTLQPGPPVSLKCIAT-----GNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVG 86 (291)
Q Consensus 12 ~~v~~g~~v~l~C~~~-----~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~ 86 (291)
+.+.+|.+..|.|.-. ..+.+.+.|||++.++........ ...+ ...|.|.++..+|+|.|+|.+.+..+
T Consensus 5 ~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~---~~~~--~~~L~I~~v~~~D~G~YtC~~~~~~~ 79 (95)
T cd05897 5 QILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFY---SLKG--STYLHIIDVSLNDSGYYTCKLQFTHE 79 (95)
T ss_pred eEeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceE---ecCC--CCEEEEEEcChhhCEEEEEEEEEeeC
Confidence 5678999999999731 245678999999998873321110 1011 13499999999999999999997654
Q ss_pred c
Q psy14540 87 S 87 (291)
Q Consensus 87 ~ 87 (291)
.
T Consensus 80 g 80 (95)
T cd05897 80 G 80 (95)
T ss_pred C
Confidence 3
No 208
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.11 E-value=4.7e-10 Score=69.64 Aligned_cols=77 Identities=19% Similarity=0.276 Sum_probs=56.4
Q ss_pred CCCcceee-cceeeeecCCcEEEEEE-ecCCCCCeeEEEECCeecC--CCeeEeceEEeeccceEEEEEEeecCCCCCe-
Q psy14540 1 SHPQLIYK-FIQQTLQPGPPVSLKCI-ATGNPTPHISWKLDGYPLA--GDRFVMGQYMSLHGDVISHVNISSVRVEDSG- 75 (291)
Q Consensus 1 s~p~~~~~-~~~~~v~~g~~v~l~C~-~~~~~~~~v~W~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G- 75 (291)
|.|.|... .....|.+|+.+.|.|. ..+.|.+.|.|++++...- +.+.. ...+ ..|.|.+++..|+|
T Consensus 1 ~~~~~~~~~~~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~~~Ri~------~~~~--GnL~fs~v~~~D~g~ 72 (95)
T cd05845 1 STPKWPKEKIRPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQDERVS------MGQN--GNLYFANVEEQDSHP 72 (95)
T ss_pred CCCcCCccccceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccccccccEE------ECCC--ceEEEEEEehhhCCC
Confidence 45666654 46788999999999997 5679999999998664322 22211 1111 45899999999999
Q ss_pred EEEEEEeCCC
Q psy14540 76 IYQCTATNRV 85 (291)
Q Consensus 76 ~y~C~~~~~~ 85 (291)
.|.|.+.+..
T Consensus 73 ~Y~C~a~~~~ 82 (95)
T cd05845 73 DYICHAHFPG 82 (95)
T ss_pred CeEEEEEccc
Confidence 8999998654
No 209
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=99.10 E-value=1.6e-09 Score=67.49 Aligned_cols=90 Identities=23% Similarity=0.361 Sum_probs=55.6
Q ss_pred CcceeecCCCceEEEEEeeCCCCCce-eEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCC
Q psy14540 113 SRSIKVHSGDRAGVQCLVTKGDPPLT-ISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDN 191 (291)
Q Consensus 113 ~~~~~~~~g~~~~l~C~~~~~~p~~~-~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~ 191 (291)
...+.+.+|+.+.|.|.+ .++|.|. +.|.+++..+............. ..-.
T Consensus 10 ~~~~~v~~gE~~~L~V~i-eAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~-------------~~~r------------- 62 (101)
T cd05860 10 NTTIFVNAGENLDLIVEY-EAYPKPEHQQWIYMNRTLTNTSDHYVKSRNE-------------SNNR------------- 62 (101)
T ss_pred CceEEEECCCCEEEEEEE-EeCCCCeeeEEEcCCcccCccccceeEEecc-------------CceE-------------
Confidence 345789999999999999 6899887 99999887654332211111100 0001
Q ss_pred CceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEe
Q psy14540 192 HSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVN 238 (291)
Q Consensus 192 ~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~ 238 (291)
+.+.|.|..+..+++|.|+|.|.|.....+.++.|.|.
T Consensus 63 ---------Y~S~L~L~Rlk~~E~G~YTf~a~N~~~~~s~tF~l~v~ 100 (101)
T cd05860 63 ---------YVSELHLTRLKGTEGGTYTFLVSNSDASASVTFNVYVN 100 (101)
T ss_pred ---------EEEEEEEeecChhhCcEEEEEEECCCCeEEEEEEEEEe
Confidence 23456666666666666666666666666666666553
No 210
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=99.09 E-value=1.1e-09 Score=63.66 Aligned_cols=62 Identities=37% Similarity=0.711 Sum_probs=43.9
Q ss_pred CCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecC
Q psy14540 120 SGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTV 187 (291)
Q Consensus 120 ~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 187 (291)
+|+.++|.|.+ .+.|.+.+.|++++..+.. ..... .....|.|..+...|.|.|+|.+.|..
T Consensus 1 ~g~~~~l~C~~-~~~~~~~v~W~~~~~~~~~--~~~~~---~~~~~L~i~~~~~~d~G~Y~C~~~n~~ 62 (63)
T smart00408 1 EGQSVTLTCPA-EGDPVPNITWLKDGKPLPE--SNRLS---ASGSTLTIKSVSLEDSGEYTCVAENSA 62 (63)
T ss_pred CCceEEEEeeC-ccCCCCeEEEEECCEECCC--CCEEe---cCCcEEEEeeCCcccCEEEEEEEecCC
Confidence 47889999997 6888899999999887761 11111 123467777777777777777776654
No 211
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=99.08 E-value=9.2e-10 Score=68.68 Aligned_cols=31 Identities=16% Similarity=0.388 Sum_probs=25.9
Q ss_pred eeecCCCceEEEEEeeCCCCCceeEEeECCEe
Q psy14540 116 IKVHSGDRAGVQCLVTKGDPPLTISWLKNGLP 147 (291)
Q Consensus 116 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~ 147 (291)
+.+.+|+.++|.|.+ .+.+.+.+.|+++++.
T Consensus 2 v~~~~G~~VtL~C~~-s~~~~~~i~W~~~~~k 32 (94)
T cd07690 2 VLGKKGDTAELPCTA-SQKKSIQFHWKNSNQI 32 (94)
T ss_pred eEeeCCCCEEEEEEe-CCCCCcEEEEEECCcE
Confidence 457789999999998 6788899999987643
No 212
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=99.07 E-value=5.2e-10 Score=65.32 Aligned_cols=63 Identities=30% Similarity=0.652 Sum_probs=40.9
Q ss_pred CCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceE-EEEEeeCCCCCceeEEEEE
Q psy14540 121 GDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTS-SLSIATLSTGHSGNYTCVA 183 (291)
Q Consensus 121 g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~-~l~i~~~~~~d~g~y~C~~ 183 (291)
|+.++|.|.+..+.+...+.|++++................... .|.|.++..+|+|.|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence 78899999985577788999999987665443333322222111 2666666666666666654
No 213
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=99.06 E-value=2.5e-09 Score=66.79 Aligned_cols=84 Identities=19% Similarity=0.283 Sum_probs=55.7
Q ss_pred ceeeeecCCcEEEEEEecC-----------CCCCeeEEEECCeecCC-CeeEec-eEEeeccceEEEEEEeecCCCCCeE
Q psy14540 10 IQQTLQPGPPVSLKCIATG-----------NPTPHISWKLDGYPLAG-DRFVMG-QYMSLHGDVISHVNISSVRVEDSGI 76 (291)
Q Consensus 10 ~~~~v~~g~~v~l~C~~~~-----------~~~~~v~W~~~~~~~~~-~~~~~~-~~~~~~~~~~~~l~i~~~~~~d~G~ 76 (291)
....+.+|+.+.|.|.... .....+.|+|++..+.. ...... .+....+ ..|.|.++..+|+|.
T Consensus 8 ~~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~---~~Lwf~Pa~~eDSG~ 84 (104)
T cd05896 8 KKYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEE---DSIWFRPAELQDSGL 84 (104)
T ss_pred eeEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeC---CEEEEEeCChhhCeE
Confidence 3467899999999998621 22347999999755542 111111 1111112 348999999999999
Q ss_pred EEEEEeCCCCceeeeeeEEE
Q psy14540 77 YQCTATNRVGSQTHSADMRV 96 (291)
Q Consensus 77 y~C~~~~~~~~~~~~~~l~v 96 (291)
|+|.+.+.......++.|+|
T Consensus 85 Y~C~~rN~t~C~~~~i~l~V 104 (104)
T cd05896 85 YTCVLRNSTYCMKVSMSLTV 104 (104)
T ss_pred EEEEECCCCcceEEEEEEEC
Confidence 99999987766665555543
No 214
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=99.06 E-value=3.5e-09 Score=63.47 Aligned_cols=67 Identities=21% Similarity=0.315 Sum_probs=49.0
Q ss_pred cEEEEEEecC-CCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCc
Q psy14540 19 PVSLKCIATG-NPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGS 87 (291)
Q Consensus 19 ~v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~ 87 (291)
.+.|+|...+ +|.+.|+||++++++....... .....-...++|.|.....+|.+.|+|++.|..+.
T Consensus 1 ~~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~~--~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~ 68 (80)
T cd05885 1 EVELTCLSPRSKPAATLRWYRDRKELKGVISQQ--ENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALV 68 (80)
T ss_pred CEEEEEeCCCccCCCeEEEEECCEECCCCcccc--cCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhC
Confidence 3689999886 8999999999999987321111 00001124467999998999999999999987765
No 215
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.05 E-value=8.7e-10 Score=68.60 Aligned_cols=70 Identities=23% Similarity=0.399 Sum_probs=51.6
Q ss_pred ceeeeecCCcEEEEEEecC-CCCCeeEEEECCeecC---CCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCC
Q psy14540 10 IQQTLQPGPPVSLKCIATG-NPTPHISWKLDGYPLA---GDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRV 85 (291)
Q Consensus 10 ~~~~v~~g~~v~l~C~~~~-~~~~~v~W~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~ 85 (291)
....+.+|+.+.|.|.... .|.+.+.|++++..+. +.+. ... . ....|.|.+++.+|+|.|+|.+.+..
T Consensus 11 ~~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~----~~~-~--~~G~L~fs~v~~~D~g~Y~C~A~n~~ 83 (96)
T cd05727 11 DEVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRR----FVS-Q--TNGNLYIAKVEASDRGNYSCFVSSPS 83 (96)
T ss_pred CceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCe----EEe-C--CCCcEEEeecCHhhCceeEEEEEecc
Confidence 4456899999999998764 7889999999986532 1111 111 1 12348999999999999999998754
Q ss_pred C
Q psy14540 86 G 86 (291)
Q Consensus 86 ~ 86 (291)
.
T Consensus 84 ~ 84 (96)
T cd05727 84 S 84 (96)
T ss_pred c
Confidence 3
No 216
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=99.05 E-value=2.8e-09 Score=69.11 Aligned_cols=83 Identities=23% Similarity=0.402 Sum_probs=55.5
Q ss_pred cCCcEEEEEEecCC------CCCeeEEEECC---e-e--c---CCCeeEe-c---eEEe--eccceEEEEEEeecCCCCC
Q psy14540 16 PGPPVSLKCIATGN------PTPHISWKLDG---Y-P--L---AGDRFVM-G---QYMS--LHGDVISHVNISSVRVEDS 74 (291)
Q Consensus 16 ~g~~v~l~C~~~~~------~~~~v~W~~~~---~-~--~---~~~~~~~-~---~~~~--~~~~~~~~l~i~~~~~~d~ 74 (291)
.|++++|.|.+... ....|.|++.. . . + ....... . .+.. ......++|+|.+++.+|+
T Consensus 1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~ 80 (106)
T cd05714 1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS 80 (106)
T ss_pred CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence 48999999998753 25679999962 1 0 1 0111110 0 0010 1133558899999999999
Q ss_pred eEEEEEEeCCCCceeeeeeEEEEc
Q psy14540 75 GIYQCTATNRVGSQTHSADMRVYD 98 (291)
Q Consensus 75 G~y~C~~~~~~~~~~~~~~l~v~~ 98 (291)
|.|.|.+.+..+.....+.|.|..
T Consensus 81 G~Y~C~v~~~~~~~~~~v~L~V~~ 104 (106)
T cd05714 81 GRYRCEVIDGIEDEQDTVELEVRG 104 (106)
T ss_pred EEEEEEEEcCCCceEEEEEEEEEE
Confidence 999999997766677777777754
No 217
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=99.04 E-value=2.4e-09 Score=69.87 Aligned_cols=79 Identities=18% Similarity=0.239 Sum_probs=54.4
Q ss_pred eeecceeeeecCCcEEEEEEecCCCCCeeEEEECCee--c----C--CC-e-eEeceEEe--eccceEEEEEEeecCCCC
Q psy14540 6 IYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYP--L----A--GD-R-FVMGQYMS--LHGDVISHVNISSVRVED 73 (291)
Q Consensus 6 ~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~--~----~--~~-~-~~~~~~~~--~~~~~~~~l~i~~~~~~d 73 (291)
...|....+.+|++++|.|.+.+.+...+.|++.... . . .. . ....+... ......+.|.|.+++.+|
T Consensus 2 ~q~~~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~D 81 (109)
T cd04983 2 TQSPQSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSD 81 (109)
T ss_pred eecCCceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHH
Confidence 4556778899999999999998767778999984321 0 0 00 0 00111111 112356889999999999
Q ss_pred CeEEEEEEeCC
Q psy14540 74 SGIYQCTATNR 84 (291)
Q Consensus 74 ~G~y~C~~~~~ 84 (291)
+|.|.|.+.+.
T Consensus 82 sG~Y~C~~~~~ 92 (109)
T cd04983 82 SAVYFCALSES 92 (109)
T ss_pred CEEEEEEEecC
Confidence 99999998754
No 218
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=99.04 E-value=9.5e-10 Score=66.51 Aligned_cols=74 Identities=34% Similarity=0.544 Sum_probs=52.1
Q ss_pred CCcceeecceeeeecCCcEEEEEEecCCC-CCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEE
Q psy14540 2 HPQLIYKFIQQTLQPGPPVSLKCIATGNP-TPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCT 80 (291)
Q Consensus 2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~ 80 (291)
||.|...+.......+. ++|.|.+.+.+ .+.++|+ +... .............+.|.|.++..+|.|.|+|.
T Consensus 1 kP~I~~~~~~~~~~~~~-~~l~C~~~~~~~~~~~~W~-~~~~------~~~~~~~~~~~~~~~L~i~~v~~~~~g~y~C~ 72 (75)
T PF13927_consen 1 KPQISVPPPPVVTSGGS-VTLTCSAEGGPPPPSISWY-DSNP------SFNSNSRGSSSSNSTLTISNVTRSDNGTYTCI 72 (75)
T ss_dssp ESEEEEESTSEEETTEE-EEEEEEESSEESSEEEEEE-TEEE------EEEEEEEEEEEEEEEEEESSCCGGGTEEEEEE
T ss_pred CCEEEEcCCCcEeecee-EEEEEEEccccCCeEEEEE-ecCC------ceeeeeeeccceeeEEEEccCCHHhCcEEEEE
Confidence 68888888776555555 99999999865 8889999 1111 01111112233457799999999999999999
Q ss_pred EeC
Q psy14540 81 ATN 83 (291)
Q Consensus 81 ~~~ 83 (291)
+.|
T Consensus 73 a~N 75 (75)
T PF13927_consen 73 ASN 75 (75)
T ss_dssp EEE
T ss_pred EEC
Confidence 864
No 219
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.03 E-value=1.8e-09 Score=67.09 Aligned_cols=72 Identities=26% Similarity=0.461 Sum_probs=52.9
Q ss_pred CcceeecCCCceEEEEEeeCCCCCceeEEeECCEe-ccCCCceEEeccCCceEEEEEeeCCCCCce-eEEEEEEecCC
Q psy14540 113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLP-ILSDAEITIRSSGEYTSSLSIATLSTGHSG-NYTCVASNTVA 188 (291)
Q Consensus 113 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g-~y~C~~~~~~~ 188 (291)
...+.+.+|+.+.|.|....|.|.|.+.|++++.. +....+.... ..+.|.|.++...|.| .|.|.|.|...
T Consensus 10 ~~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~~~Ri~~~----~~GnL~fs~v~~~D~g~~Y~C~a~~~~~ 83 (95)
T cd05845 10 IRPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQDERVSMG----QNGNLYFANVEEQDSHPDYICHAHFPGL 83 (95)
T ss_pred cceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccccccccEEEC----CCceEEEEEEehhhCCCCeEEEEEcccc
Confidence 34578899999999998658999999999987644 2223333222 2356888888888888 68888887654
No 220
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=99.03 E-value=2.7e-09 Score=66.86 Aligned_cols=74 Identities=20% Similarity=0.288 Sum_probs=55.5
Q ss_pred CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEE
Q psy14540 2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTA 81 (291)
Q Consensus 2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~ 81 (291)
+|.+...|. ..|.+|++|+|.|... .+...+.|+++|........ ........+.|.+++.+|+|.|+|..
T Consensus 2 kP~L~a~p~-~vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~~~-------~~~~~~~~f~i~~v~~~~~G~Y~C~~ 72 (91)
T cd05751 2 KPSLWAEPS-SVVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVKKP-------PEPQNKAKFFIPSMKREHAGRYRCYY 72 (91)
T ss_pred CCEEEecCC-CccCCCCcEEEEEecC-CCCCEEEEEECCCCcccccc-------CCCceeEEEEccCCChhHCEEEEEEE
Confidence 577777775 4789999999999876 56678999999875442110 11233466899999999999999998
Q ss_pred eCC
Q psy14540 82 TNR 84 (291)
Q Consensus 82 ~~~ 84 (291)
.+.
T Consensus 73 ~~~ 75 (91)
T cd05751 73 RSG 75 (91)
T ss_pred ECC
Confidence 764
No 221
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=99.01 E-value=1.3e-08 Score=63.16 Aligned_cols=71 Identities=31% Similarity=0.705 Sum_probs=45.5
Q ss_pred eeecCCCceEEEEEeeCCCCCceeEEeEC-CEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCC
Q psy14540 116 IKVHSGDRAGVQCLVTKGDPPLTISWLKN-GLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVA 188 (291)
Q Consensus 116 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~-~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~ 188 (291)
..+..|+.+.|.|.+ .+.+.+.+.|+++ +..+....+........ ...|.+..+...|.|.|.|.+.+..+
T Consensus 4 ~~~~~g~~~~l~C~~-~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~-~~~l~i~~~~~~d~G~Y~C~v~~~~~ 75 (86)
T smart00410 4 VTVKEGESVTLSCEV-SGSPPPEVTWYKQGGKLLAESGRFSVSRSGS-NSTLTISNVTPEDSGTYTCAATNSSG 75 (86)
T ss_pred EEEeCCCeEEEEEEE-ccCCCCeEEEEECCCEEcCCCCcEEEEEcCC-eeEEEEEeeccccCeEEEEEEEcCCC
Confidence 566789999999999 4557889999998 77765344333332221 34555555555555555555554433
No 222
>smart00409 IG Immunoglobulin.
Probab=99.01 E-value=1.3e-08 Score=63.16 Aligned_cols=71 Identities=31% Similarity=0.705 Sum_probs=45.5
Q ss_pred eeecCCCceEEEEEeeCCCCCceeEEeEC-CEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCC
Q psy14540 116 IKVHSGDRAGVQCLVTKGDPPLTISWLKN-GLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVA 188 (291)
Q Consensus 116 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~-~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~ 188 (291)
..+..|+.+.|.|.+ .+.+.+.+.|+++ +..+....+........ ...|.+..+...|.|.|.|.+.+..+
T Consensus 4 ~~~~~g~~~~l~C~~-~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~-~~~l~i~~~~~~d~G~Y~C~v~~~~~ 75 (86)
T smart00409 4 VTVKEGESVTLSCEV-SGSPPPEVTWYKQGGKLLAESGRFSVSRSGS-NSTLTISNVTPEDSGTYTCAATNSSG 75 (86)
T ss_pred EEEeCCCeEEEEEEE-ccCCCCeEEEEECCCEEcCCCCcEEEEEcCC-eeEEEEEeeccccCeEEEEEEEcCCC
Confidence 566789999999999 4557889999998 77765344333332221 34555555555555555555554433
No 223
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=99.01 E-value=1e-08 Score=64.98 Aligned_cols=29 Identities=24% Similarity=0.576 Sum_probs=24.7
Q ss_pred cceeecCCCceEEEEEeeCCCCCceeEEeE
Q psy14540 114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLK 143 (291)
Q Consensus 114 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~ 143 (291)
....+.+|+.++|.|.+ .+.+.+.+.|++
T Consensus 5 ~~~~v~~G~~v~L~C~~-~~~~~~~v~W~~ 33 (95)
T cd05717 5 QDVTVVEGGTATLKCRV-KNNDNSSLQWSN 33 (95)
T ss_pred CcEEEcCCCCEEEEEEE-CCCCCceEEEeC
Confidence 34678899999999998 577888999985
No 224
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.00 E-value=8.7e-09 Score=63.32 Aligned_cols=70 Identities=24% Similarity=0.442 Sum_probs=48.0
Q ss_pred cEEEEEEecC-CCCCeeEEEECCeecCCCeeEeceEEe-eccceEEEEEEeecCCCCCeEEEEEEeCCCCce
Q psy14540 19 PVSLKCIATG-NPTPHISWKLDGYPLAGDRFVMGQYMS-LHGDVISHVNISSVRVEDSGIYQCTATNRVGSQ 88 (291)
Q Consensus 19 ~v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~ 88 (291)
.+.|.|.+.+ .|.+.++|+++|+.+............ ......+.|.|......|.|.|+|.+.+.....
T Consensus 1 ~~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~ 72 (82)
T cd05759 1 PYNLTCRARGAKPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPT 72 (82)
T ss_pred CEEEEEEEeCccCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCC
Confidence 3689999987 688899999999987743322111000 011234678888888888899999998765443
No 225
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=99.00 E-value=4.9e-09 Score=66.93 Aligned_cols=78 Identities=12% Similarity=0.143 Sum_probs=51.4
Q ss_pred eeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCC---eeEe-----------ceEEeeccceEEEEEEeecCC
Q psy14540 6 IYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGD---RFVM-----------GQYMSLHGDVISHVNISSVRV 71 (291)
Q Consensus 6 ~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~---~~~~-----------~~~~~~~~~~~~~l~i~~~~~ 71 (291)
++++.+..+.+|+++.|.|.....+...+.|+|+....... .+.. ..+..... ..+|.|.+++.
T Consensus 2 tie~~p~~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~--ngSL~I~~v~~ 79 (105)
T cd05774 2 TIELVPPQVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYP--NGSLLIQNVTQ 79 (105)
T ss_pred eEeccCCcccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeC--CCcEEEecCCc
Confidence 45666778999999999998755555589999963211100 0000 00111111 14799999999
Q ss_pred CCCeEEEEEEeCCC
Q psy14540 72 EDSGIYQCTATNRV 85 (291)
Q Consensus 72 ~d~G~y~C~~~~~~ 85 (291)
.|+|.|+|.+.+..
T Consensus 80 ~D~G~Y~~~v~~~~ 93 (105)
T cd05774 80 KDTGFYTLQTITTN 93 (105)
T ss_pred ccCEEEEEEEEeCC
Confidence 99999999998655
No 226
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=99.00 E-value=9.9e-09 Score=66.89 Aligned_cols=79 Identities=16% Similarity=0.257 Sum_probs=50.8
Q ss_pred ecceeeeecCCcEEEEEEecCC----CCCeeEEEE---------------CCeecC--CCeeEece-EEeeccceEEEEE
Q psy14540 8 KFIQQTLQPGPPVSLKCIATGN----PTPHISWKL---------------DGYPLA--GDRFVMGQ-YMSLHGDVISHVN 65 (291)
Q Consensus 8 ~~~~~~v~~g~~v~l~C~~~~~----~~~~v~W~~---------------~~~~~~--~~~~~~~~-~~~~~~~~~~~l~ 65 (291)
.+....+..|+.++|.|.+... +...|.|.+ +|.... ...+.... ..........+|.
T Consensus 4 ~~~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~ 83 (116)
T cd05879 4 TDREVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIV 83 (116)
T ss_pred ccceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEE
Confidence 4566789999999999999762 345799943 122111 01000000 0111123457899
Q ss_pred EeecCCCCCeEEEEEEeCCCC
Q psy14540 66 ISSVRVEDSGIYQCTATNRVG 86 (291)
Q Consensus 66 i~~~~~~d~G~y~C~~~~~~~ 86 (291)
|.+++.+|.|.|+|.+.+...
T Consensus 84 I~nv~~sD~G~Y~C~v~n~p~ 104 (116)
T cd05879 84 IHNLDYTDNGTFTCDVKNPPD 104 (116)
T ss_pred EccCCcccCEEEEEEEEcCCC
Confidence 999999999999999987654
No 227
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.99 E-value=8.1e-09 Score=66.76 Aligned_cols=82 Identities=17% Similarity=0.352 Sum_probs=52.9
Q ss_pred cCCcEEEEEEecCCC------------CCeeEEEEC--Cee---cC--CCeeEe-----ceEEeec---cceEEEEEEee
Q psy14540 16 PGPPVSLKCIATGNP------------TPHISWKLD--GYP---LA--GDRFVM-----GQYMSLH---GDVISHVNISS 68 (291)
Q Consensus 16 ~g~~v~l~C~~~~~~------------~~~v~W~~~--~~~---~~--~~~~~~-----~~~~~~~---~~~~~~l~i~~ 68 (291)
.|++++|+|.+.... .+.|.|+|. +.. +. ...... .+..... ....++|+|.+
T Consensus 1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n 80 (112)
T cd05900 1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE 80 (112)
T ss_pred CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence 489999999997532 358999984 211 10 111110 0111111 23568899999
Q ss_pred cCCCCCeEEEEEEeCCCCceeeeeeEEEE
Q psy14540 69 VRVEDSGIYQCTATNRVGSQTHSADMRVY 97 (291)
Q Consensus 69 ~~~~d~G~y~C~~~~~~~~~~~~~~l~v~ 97 (291)
++.+|+|.|+|.+.+........+.|.|.
T Consensus 81 l~~sDsG~Y~C~V~~g~~~~~~~v~l~v~ 109 (112)
T cd05900 81 LRSNDSGTYRCEVMHGIEDNYDTVEVQVK 109 (112)
T ss_pred cccccCEEEEEEEecCCCCceeEEEEEEE
Confidence 99999999999998665566666666664
No 228
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=98.99 E-value=8.1e-09 Score=67.02 Aligned_cols=83 Identities=24% Similarity=0.418 Sum_probs=55.2
Q ss_pred cCCcEEEEEEecCCC----------CCeeEEEEC--CeecC-----CCeeEec----eEEee----ccceEEEEEEeecC
Q psy14540 16 PGPPVSLKCIATGNP----------TPHISWKLD--GYPLA-----GDRFVMG----QYMSL----HGDVISHVNISSVR 70 (291)
Q Consensus 16 ~g~~v~l~C~~~~~~----------~~~v~W~~~--~~~~~-----~~~~~~~----~~~~~----~~~~~~~l~i~~~~ 70 (291)
.|++++|+|.+...+ ...+.|+|. ++... ....... .+... .....++|+|.+++
T Consensus 1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~ 80 (110)
T cd05878 1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR 80 (110)
T ss_pred CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence 389999999997532 356999984 22111 1111000 01111 22355789999999
Q ss_pred CCCCeEEEEEEeCCCCceeeeeeEEEEc
Q psy14540 71 VEDSGIYQCTATNRVGSQTHSADMRVYD 98 (291)
Q Consensus 71 ~~d~G~y~C~~~~~~~~~~~~~~l~v~~ 98 (291)
.+|+|.|.|.+..........+.|.|..
T Consensus 81 ~sD~G~Y~C~v~~~~~~~~~~v~l~V~g 108 (110)
T cd05878 81 SSDSGVYRCEVMHGIEDEQDTVPLEVTG 108 (110)
T ss_pred hhhCEEEEEEEEeCCCcceEEEEEEEEE
Confidence 9999999999987666777788888764
No 229
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=98.98 E-value=6.6e-09 Score=63.22 Aligned_cols=63 Identities=27% Similarity=0.469 Sum_probs=49.0
Q ss_pred ceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCC-CeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEe
Q psy14540 10 IQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAG-DRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTAT 82 (291)
Q Consensus 10 ~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~ 82 (291)
...++.+|+++.|.|...+. ...+.|++++..+.. .++.. .. ..|.|.+++..|+|.|.|.+.
T Consensus 4 ~~~tv~~g~~v~L~C~~~s~-~A~v~W~~ng~~l~~~~r~~~-----~~----~GLlI~~~~~~dsG~Y~C~s~ 67 (85)
T cd05872 4 KNRTVAPGADVVLPCQLRSN-LASPVWLFNGTPLNAQFSYRV-----GT----DGLLILVTSPEHSGTYRCYSE 67 (85)
T ss_pred eEEEEecCCCEEEECCCCCC-CccEEEEECCcccCCCcceEE-----eC----CCCEEEECCHhhCEEEEEEEe
Confidence 45789999999999998864 569999999998763 22221 11 126799999999999999976
No 230
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.98 E-value=1.5e-08 Score=60.94 Aligned_cols=28 Identities=21% Similarity=0.526 Sum_probs=24.9
Q ss_pred eEEEEEeeCCCCCceeEEeECCEeccCC
Q psy14540 124 AGVQCLVTKGDPPLTISWLKNGLPILSD 151 (291)
Q Consensus 124 ~~l~C~~~~~~p~~~~~W~~~~~~~~~~ 151 (291)
+.|.|.+.+++|.+.++||+++.++...
T Consensus 2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~ 29 (82)
T cd05883 2 IELNCTAMASKPAATIRWFKGNKELTGK 29 (82)
T ss_pred EEEEEEecCCCCCCEEEEEECCEECcCc
Confidence 6899999889999999999999988543
No 231
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=98.98 E-value=7.9e-09 Score=63.86 Aligned_cols=28 Identities=14% Similarity=0.323 Sum_probs=20.3
Q ss_pred CCceEEEEEeeC-CCCCceeEEeECCEec
Q psy14540 121 GDRAGVQCLVTK-GDPPLTISWLKNGLPI 148 (291)
Q Consensus 121 g~~~~l~C~~~~-~~p~~~~~W~~~~~~~ 148 (291)
|+++.|.|.+.. ..+...+.|.+.+...
T Consensus 1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~ 29 (86)
T cd05862 1 GEKLVLNCTARTELNVGIDFQWDYPGKKE 29 (86)
T ss_pred CCcEEEEEEEEeCCCCcEEEEEEcCCccc
Confidence 788999999942 2345688998876543
No 232
>PHA03376 BARF1; Provisional
Probab=98.97 E-value=2.5e-08 Score=68.24 Aligned_cols=132 Identities=17% Similarity=0.268 Sum_probs=72.6
Q ss_pred ceeecCCCceEEEEEee--CCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCC
Q psy14540 115 SIKVHSGDRAGVQCLVT--KGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNH 192 (291)
Q Consensus 115 ~~~~~~g~~~~l~C~~~--~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~ 192 (291)
.+....|+.+.|+|... ...+...+.|+|.+.- .........+.. .... +....|.+.
T Consensus 20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~---~~~VvL~~~ggd---Vv~~--QmEyRGrtD------------ 79 (221)
T PHA03376 20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPG---EEQVLIGRMHHD---VIFI--EWPFRGFFD------------ 79 (221)
T ss_pred chhheeCCcEEEEecccCccCCCceEEEEEecCCC---CCCEEEEEcCCe---eeee--eeccccEEE------------
Confidence 45667899999999863 1224568999996420 111111111100 0000 001111111
Q ss_pred ceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCcee--------EEEEecCCCCCCCCcccccCCceEEEEEEee
Q psy14540 193 SSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSS--------NLRVNVPPHIGPFTFGELMEGVRTQVACVVQ 264 (291)
Q Consensus 193 ~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~--------~l~v~~~p~~~~~~~~~~~~g~~v~l~C~~~ 264 (291)
+.-...+.+|.|.+++..|.|.|+|.+.......-..- .|.|+..... ...-...+++|.+
T Consensus 80 ---~~~~~gnvsLvI~~l~lSDdGtY~C~fQkge~~~~k~ehLt~V~~~~Lsv~a~~~d-------Fp~~~~~~i~C~s- 148 (221)
T PHA03376 80 ---IHRSANTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVVKPLTLSVHSERSQ-------FPDFSVLTVTCTV- 148 (221)
T ss_pred ---EEecCCeEEEEEEeeeecCCceEEEEEEcCCCceeeeeeeeeeecceEEEEecccc-------CCCCCeeEEEEec-
Confidence 11111356788889999999999998886552221111 2333331111 1224567899996
Q ss_pred cCCCCceEEEEEC
Q psy14540 265 SGDLPLSLQWYKN 277 (291)
Q Consensus 265 ~~~p~~~v~W~~~ 277 (291)
+|+|.|-++|+-+
T Consensus 149 ggfP~P~~~Wle~ 161 (221)
T PHA03376 149 NAFPHPHVQWLMP 161 (221)
T ss_pred CCcCCchheeccc
Confidence 9999999999965
No 233
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.97 E-value=1.6e-08 Score=62.13 Aligned_cols=27 Identities=19% Similarity=0.497 Sum_probs=22.9
Q ss_pred eEEEEEeeCCCCCceeEEeECCEeccC
Q psy14540 124 AGVQCLVTKGDPPLTISWLKNGLPILS 150 (291)
Q Consensus 124 ~~l~C~~~~~~p~~~~~W~~~~~~~~~ 150 (291)
+.|.|.+.+++|.+.++|+++|.++..
T Consensus 2 ~~L~C~v~g~~P~~~v~W~~~g~~l~~ 28 (82)
T cd05759 2 YNLTCRARGAKPAAEIIWFRDGEVLDG 28 (82)
T ss_pred EEEEEEEeCccCCCEEEEEECCEEccC
Confidence 689999966688899999999988753
No 234
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.97 E-value=5.5e-09 Score=68.17 Aligned_cols=78 Identities=21% Similarity=0.242 Sum_probs=53.5
Q ss_pred eeecceeeeecCCcEEEEEEecCCCCCeeEEEECCe--ecC------C--Ce----eEeceEEe-eccceEEEEEEeecC
Q psy14540 6 IYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGY--PLA------G--DR----FVMGQYMS-LHGDVISHVNISSVR 70 (291)
Q Consensus 6 ~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~--~~~------~--~~----~~~~~~~~-~~~~~~~~l~i~~~~ 70 (291)
.+.|....+.+|++++|.|.+.+ +...+.|||... ... . .. ....++.. ......++|.|.+++
T Consensus 2 ~Q~p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~ 80 (110)
T cd05899 2 TQSPRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAE 80 (110)
T ss_pred EECCCceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCC
Confidence 45677889999999999999987 667899999432 111 0 00 00111111 112246889999999
Q ss_pred CCCCeEEEEEEeCC
Q psy14540 71 VEDSGIYQCTATNR 84 (291)
Q Consensus 71 ~~d~G~y~C~~~~~ 84 (291)
.+|+|.|.|.+...
T Consensus 81 ~~Dsg~Y~Ca~~~~ 94 (110)
T cd05899 81 PEDSAVYLCASSLG 94 (110)
T ss_pred hhhCEEEEEEeeCC
Confidence 99999999998753
No 235
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.96 E-value=8.3e-09 Score=66.88 Aligned_cols=83 Identities=19% Similarity=0.283 Sum_probs=54.2
Q ss_pred cCCcEEEEEEecCC------CCCeeEEEECCee--------cCCCee-E----eceEEee--ccceEEEEEEeecCCCCC
Q psy14540 16 PGPPVSLKCIATGN------PTPHISWKLDGYP--------LAGDRF-V----MGQYMSL--HGDVISHVNISSVRVEDS 74 (291)
Q Consensus 16 ~g~~v~l~C~~~~~------~~~~v~W~~~~~~--------~~~~~~-~----~~~~~~~--~~~~~~~l~i~~~~~~d~ 74 (291)
.|++++|.|.+... ....|.|+|.... +..... . ...+... .....++|.|.+++.+|+
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds 80 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY 80 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence 48999999998754 2356999995311 001000 0 0001111 112346899999999999
Q ss_pred eEEEEEEeCCCCceeeeeeEEEEc
Q psy14540 75 GIYQCTATNRVGSQTHSADMRVYD 98 (291)
Q Consensus 75 G~y~C~~~~~~~~~~~~~~l~v~~ 98 (291)
|.|.|.+.+..+.....+.|.|..
T Consensus 81 G~Y~C~v~~~~~~~~~~~~l~v~~ 104 (106)
T cd05877 81 GRYRCEVIDGLEDESVVVALRLRG 104 (106)
T ss_pred EEEEEEEEecccceEEEEEEEEEE
Confidence 999999988777777777777753
No 236
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.96 E-value=2.6e-09 Score=66.52 Aligned_cols=74 Identities=19% Similarity=0.275 Sum_probs=50.5
Q ss_pred eeecCCCceEEEEEeeC----CCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCC
Q psy14540 116 IKVHSGDRAGVQCLVTK----GDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDN 191 (291)
Q Consensus 116 ~~~~~g~~~~l~C~~~~----~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~ 191 (291)
..+..|....|.|.-.. ..+.+.+.|||++.++........... ....|.+.++..+|+|.|+|.+.+..+...
T Consensus 5 ~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~~~~--~~~~L~I~~v~~~D~G~YtC~~~~~~~g~~ 82 (95)
T cd05897 5 QILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFYSLK--GSTYLHIIDVSLNDSGYYTCKLQFTHEGKK 82 (95)
T ss_pred eEeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceEecC--CCCEEEEEEcChhhCEEEEEEEEEeeCCEE
Confidence 35667889999996322 346679999999998865442221111 123588888888888888888888765443
No 237
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=98.92 E-value=1.2e-08 Score=63.63 Aligned_cols=28 Identities=18% Similarity=0.427 Sum_probs=23.2
Q ss_pred eeecCCCceEEEEEeeCCCCCceeEEeECC
Q psy14540 116 IKVHSGDRAGVQCLVTKGDPPLTISWLKNG 145 (291)
Q Consensus 116 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~ 145 (291)
+...+|+.+.|.|.. +.|.+.+.|++.+
T Consensus 6 ~~~~eG~~v~L~C~~--~~p~p~v~Wykq~ 33 (91)
T cd05871 6 VYGVENNSTFLECLP--KSPQASVKWLFQR 33 (91)
T ss_pred EEEecCCcEEEEEEC--CCCCceEEEEEEC
Confidence 457789999999996 4788999999843
No 238
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=98.91 E-value=2e-08 Score=64.36 Aligned_cols=80 Identities=16% Similarity=0.294 Sum_probs=50.7
Q ss_pred CCcEEEEEEecCC---CCCeeEEEECCe--ecC---CCee-------EeceEEee----ccceEEEEEEeecCCCCCeEE
Q psy14540 17 GPPVSLKCIATGN---PTPHISWKLDGY--PLA---GDRF-------VMGQYMSL----HGDVISHVNISSVRVEDSGIY 77 (291)
Q Consensus 17 g~~v~l~C~~~~~---~~~~v~W~~~~~--~~~---~~~~-------~~~~~~~~----~~~~~~~l~i~~~~~~d~G~y 77 (291)
|++++|+|.+... ....+.|++... .+. .... ....+... ...+.++|+|.+++.+|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y 80 (100)
T cd05713 1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLY 80 (100)
T ss_pred CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEE
Confidence 7899999998632 234689988542 110 1000 00011111 123457899999999999999
Q ss_pred EEEEeCCCCceeeeeeEEE
Q psy14540 78 QCTATNRVGSQTHSADMRV 96 (291)
Q Consensus 78 ~C~~~~~~~~~~~~~~l~v 96 (291)
+|.+.+..+.....+.|+|
T Consensus 81 ~C~v~~~~~~~~~~i~l~v 99 (100)
T cd05713 81 TCFFQSDGFYEEATVELKV 99 (100)
T ss_pred EEEEecCCcEEEEEEEEEE
Confidence 9999976666666666665
No 239
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=98.91 E-value=1.4e-08 Score=64.49 Aligned_cols=80 Identities=23% Similarity=0.333 Sum_probs=52.3
Q ss_pred CCcEEEEEEecCCC-CCeeEEEECCe----ecC----------CCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEE
Q psy14540 17 GPPVSLKCIATGNP-TPHISWKLDGY----PLA----------GDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTA 81 (291)
Q Consensus 17 g~~v~l~C~~~~~~-~~~v~W~~~~~----~~~----------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~ 81 (291)
|++++|.|...... ...|.|+|... .+. ...+.............++|.|.+++.+|+|.|+|.+
T Consensus 1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~ 80 (97)
T cd05846 1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF 80 (97)
T ss_pred CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence 78999999976533 23699998421 110 0111111111122334588999999999999999997
Q ss_pred e-CCCCceeeeeeEEE
Q psy14540 82 T-NRVGSQTHSADMRV 96 (291)
Q Consensus 82 ~-~~~~~~~~~~~l~v 96 (291)
. .+.|.....+.|+|
T Consensus 81 ~~~p~g~~~~~~~L~v 96 (97)
T cd05846 81 NTFPDGSKSGTMCLTV 96 (97)
T ss_pred EeCCCCCeeeEEEEEE
Confidence 7 56777777777776
No 240
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=98.91 E-value=2.2e-08 Score=68.94 Aligned_cols=91 Identities=19% Similarity=0.225 Sum_probs=62.4
Q ss_pred ceeeeecCCcEEEEEEec-CCCCCeeEEEECCeecC----CC-----eeEeceEEeeccceEEEEEEeecCCCCCeEEEE
Q psy14540 10 IQQTLQPGPPVSLKCIAT-GNPTPHISWKLDGYPLA----GD-----RFVMGQYMSLHGDVISHVNISSVRVEDSGIYQC 79 (291)
Q Consensus 10 ~~~~v~~g~~v~l~C~~~-~~~~~~v~W~~~~~~~~----~~-----~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C 79 (291)
...+|.+|++++|.|... +...+.++|+|..+.+. .+ .+.............+.|+|.+++.+|+|.|+|
T Consensus 23 ~~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C 102 (189)
T PHA02987 23 VKITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTC 102 (189)
T ss_pred EEEEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEE
Confidence 346789999999999985 45677899999643221 11 010000001122234789999999999999999
Q ss_pred EEe-CCCC-ceeeeeeEEEEcCC
Q psy14540 80 TAT-NRVG-SQTHSADMRVYDAP 100 (291)
Q Consensus 80 ~~~-~~~~-~~~~~~~l~v~~~~ 100 (291)
.+. .+.| ..+....|+|....
T Consensus 103 ~F~tfp~G~~~~gt~CLtVt~~~ 125 (189)
T PHA02987 103 IFNTLLSKNNEKGVVCLNVTTDS 125 (189)
T ss_pred EEEecCCCCCceeEEEEEEEchh
Confidence 976 4566 67888888887654
No 241
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.91 E-value=1.4e-08 Score=65.77 Aligned_cols=79 Identities=18% Similarity=0.336 Sum_probs=53.2
Q ss_pred ceeecceeeeecCCcEEEEEEecCCC-CCeeEEEECC--ee---cC--CCeeE---eceEEeeccceEEEEEEeecCCCC
Q psy14540 5 LIYKFIQQTLQPGPPVSLKCIATGNP-TPHISWKLDG--YP---LA--GDRFV---MGQYMSLHGDVISHVNISSVRVED 73 (291)
Q Consensus 5 ~~~~~~~~~v~~g~~v~l~C~~~~~~-~~~v~W~~~~--~~---~~--~~~~~---~~~~~~~~~~~~~~l~i~~~~~~d 73 (291)
+.+.|....+.+|++++|.|.+.+.. ...+.|||.. +. +. ..... ..+.........+.|.|.+++.+|
T Consensus 3 v~Q~p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~D 82 (106)
T cd04980 3 LTQSPATLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPED 82 (106)
T ss_pred EEECCCcEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHH
Confidence 45677888999999999999987643 5679999832 21 11 00000 011111223345789999999999
Q ss_pred CeEEEEEEeC
Q psy14540 74 SGIYQCTATN 83 (291)
Q Consensus 74 ~G~y~C~~~~ 83 (291)
+|.|.|.+.+
T Consensus 83 sg~Y~Ca~~~ 92 (106)
T cd04980 83 AAVYYCQQYG 92 (106)
T ss_pred CEEEEEEEeC
Confidence 9999999854
No 242
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=98.90 E-value=2.6e-08 Score=65.26 Aligned_cols=79 Identities=22% Similarity=0.270 Sum_probs=49.8
Q ss_pred ecceeeeecCCcEEEEEEecCCC----CCeeEEEEC----Cee--cC---CC-------eeEeceE-EeeccceEEEEEE
Q psy14540 8 KFIQQTLQPGPPVSLKCIATGNP----TPHISWKLD----GYP--LA---GD-------RFVMGQY-MSLHGDVISHVNI 66 (291)
Q Consensus 8 ~~~~~~v~~g~~v~l~C~~~~~~----~~~v~W~~~----~~~--~~---~~-------~~~~~~~-~~~~~~~~~~l~i 66 (291)
.|..+.+.+|++++|.|.+...+ ...|.|++. +.. +. .. ++..... ........++|.|
T Consensus 4 ~~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I 83 (115)
T cd05880 4 TSKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILI 83 (115)
T ss_pred cCceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEE
Confidence 35677899999999999986432 246999852 111 10 00 1100000 0011234577999
Q ss_pred eecCCCCCeEEEEEEeCCCC
Q psy14540 67 SSVRVEDSGIYQCTATNRVG 86 (291)
Q Consensus 67 ~~~~~~d~G~y~C~~~~~~~ 86 (291)
.+++.+|+|.|+|.+.+...
T Consensus 84 ~~v~~~D~G~Y~C~v~~~~~ 103 (115)
T cd05880 84 WQLQPTDNGTYTCQVKNPPD 103 (115)
T ss_pred eeCChhhCEEEEEEEEeCCC
Confidence 99999999999999986544
No 243
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.89 E-value=2e-08 Score=66.24 Aligned_cols=78 Identities=21% Similarity=0.319 Sum_probs=52.8
Q ss_pred eeecceeeeecCCcEEEEEEecC--CCCCeeEEEEC--Ceec------CC--Cee-----EeceEEeeccc--eEEEEEE
Q psy14540 6 IYKFIQQTLQPGPPVSLKCIATG--NPTPHISWKLD--GYPL------AG--DRF-----VMGQYMSLHGD--VISHVNI 66 (291)
Q Consensus 6 ~~~~~~~~v~~g~~v~l~C~~~~--~~~~~v~W~~~--~~~~------~~--~~~-----~~~~~~~~~~~--~~~~l~i 66 (291)
.+.|..+.+.+|++++|.|.+.+ .+...+.|++. +... .. ... ...+....... ..+.|+|
T Consensus 2 ~Q~p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I 81 (116)
T cd04982 2 EQPQLSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTI 81 (116)
T ss_pred CCcCCeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEE
Confidence 35577788999999999999876 56778999994 2211 00 000 01111111122 5688999
Q ss_pred eecCCCCCeEEEEEEeC
Q psy14540 67 SSVRVEDSGIYQCTATN 83 (291)
Q Consensus 67 ~~~~~~d~G~y~C~~~~ 83 (291)
.+++.+|+|.|.|.+..
T Consensus 82 ~~~~~~Dsg~Y~C~~~~ 98 (116)
T cd04982 82 QNLEKEDSATYYCAYWE 98 (116)
T ss_pred EECCHHHCEEEEEEEec
Confidence 99999999999999863
No 244
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=98.89 E-value=9e-09 Score=63.05 Aligned_cols=33 Identities=42% Similarity=0.871 Sum_probs=28.2
Q ss_pred eeecCCCceEEEEEeeCCCCCceeEEeECCEecc
Q psy14540 116 IKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPIL 149 (291)
Q Consensus 116 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~ 149 (291)
..+.+|+.+.|.|.+ .+.|...+.|++++..+.
T Consensus 9 ~~v~~g~~~~l~C~~-~~~p~~~~~w~~~~~~~~ 41 (80)
T PF13895_consen 9 QSVEEGDSVTLTCSV-SGNPPPQVQWYKNGSPIN 41 (80)
T ss_dssp SEEETTSEEEEEEEE-ESSSSSEEEEEETTEEEE
T ss_pred eEEeCCCcEEEEEEE-Ecccceeeeeeeeeeeee
Confidence 457899999999999 488889999999887664
No 245
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=98.89 E-value=1.9e-08 Score=63.37 Aligned_cols=68 Identities=19% Similarity=0.247 Sum_probs=45.7
Q ss_pred CCcEEEEEEecCCCCCeeEEEECCeecCCCee---------E----eceEEeeccceEEEEEEeecCCCCCeEEEEEEeC
Q psy14540 17 GPPVSLKCIATGNPTPHISWKLDGYPLAGDRF---------V----MGQYMSLHGDVISHVNISSVRVEDSGIYQCTATN 83 (291)
Q Consensus 17 g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~---------~----~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~ 83 (291)
|++|+|.|.........+.|+++......... . ...+.....+ .+|.|.+++.+|+|.|+|.+..
T Consensus 1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~--~sL~I~~l~~~DsG~Y~c~v~~ 78 (92)
T cd05741 1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPN--GSLLIQNLTKEDSGTYTLQIIS 78 (92)
T ss_pred CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCC--ceEEEccCCchhcEEEEEEEEc
Confidence 78999999987656668999996543221000 0 0011111122 7799999999999999999986
Q ss_pred CCC
Q psy14540 84 RVG 86 (291)
Q Consensus 84 ~~~ 86 (291)
..+
T Consensus 79 ~~~ 81 (92)
T cd05741 79 TNG 81 (92)
T ss_pred CCC
Confidence 553
No 246
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=98.89 E-value=3.5e-08 Score=61.59 Aligned_cols=31 Identities=26% Similarity=0.399 Sum_probs=24.4
Q ss_pred cceeecCCCceEEEEEeeCCCCCceeEEeECC
Q psy14540 114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKNG 145 (291)
Q Consensus 114 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~ 145 (291)
..+.+.+|++++|.|.+ .+.....+.|++.+
T Consensus 5 ~nvtv~~G~ta~L~C~v-~~~~~~~v~w~~~~ 35 (95)
T cd05881 5 EDVTVVEGEVAIISCRV-KNNDDSVIQLLNPN 35 (95)
T ss_pred CceEEcCCCcEEEEEEE-ccCCccEEEEEecC
Confidence 34778899999999999 56556678888655
No 247
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=98.88 E-value=2.6e-08 Score=62.65 Aligned_cols=75 Identities=19% Similarity=0.290 Sum_probs=52.7
Q ss_pred CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEE
Q psy14540 2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTA 81 (291)
Q Consensus 2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~ 81 (291)
+|.+...|. ..|.+|++|+|.|.... ....+.|+|+|........ .....+...+.+.|.+++.+|+|.|+|..
T Consensus 1 kP~l~a~p~-~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~~----~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~ 74 (94)
T cd05711 1 KPFLSAHPS-PVVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVLHL----YEKHHGGFQASFPLGPVTPAHAGTYRCYG 74 (94)
T ss_pred CCEEEecCC-CccCCCCeEEEEEecCC-CCCEEEEEECCCCCCceec----ccccCCeEEEEEEecCCCcccCEEEEEEE
Confidence 466666554 56889999999998764 5567999998865331110 00011334467899999999999999997
Q ss_pred e
Q psy14540 82 T 82 (291)
Q Consensus 82 ~ 82 (291)
.
T Consensus 75 ~ 75 (94)
T cd05711 75 S 75 (94)
T ss_pred E
Confidence 5
No 248
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=98.86 E-value=2.8e-08 Score=63.47 Aligned_cols=80 Identities=19% Similarity=0.254 Sum_probs=50.8
Q ss_pred CcEEEEEEecCCC---CCeeEEEECCee----cC----C------CeeEeceEEeeccceEEEEEEeecCCCCCeEEEEE
Q psy14540 18 PPVSLKCIATGNP---TPHISWKLDGYP----LA----G------DRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCT 80 (291)
Q Consensus 18 ~~v~l~C~~~~~~---~~~v~W~~~~~~----~~----~------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~ 80 (291)
++++|.|.+.... ...|.|+|.... +. . ..+..............+|+|.+++.+|+|.|.|.
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~ 80 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICE 80 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEE
Confidence 5799999997643 446999995421 10 0 00000000001111457899999999999999999
Q ss_pred Ee-CCCCceeeeeeEEEE
Q psy14540 81 AT-NRVGSQTHSADMRVY 97 (291)
Q Consensus 81 ~~-~~~~~~~~~~~l~v~ 97 (291)
+. ...|.....+.|.|+
T Consensus 81 v~~~~~g~~~~~~~l~V~ 98 (98)
T cd05718 81 FATFPQGNRQKVTTLTVL 98 (98)
T ss_pred EEeCCCCcEEEEEEEEeC
Confidence 86 466777777777763
No 249
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=98.86 E-value=3.7e-08 Score=61.79 Aligned_cols=81 Identities=15% Similarity=0.209 Sum_probs=55.9
Q ss_pred CcceeecceeeeecCCcEEEEEEecC-CCCCe--eEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCe-EEE
Q psy14540 3 PQLIYKFIQQTLQPGPPVSLKCIATG-NPTPH--ISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSG-IYQ 78 (291)
Q Consensus 3 p~~~~~~~~~~v~~g~~v~l~C~~~~-~~~~~--v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G-~y~ 78 (291)
-.+.+.+.+..+.+|+.++|.|.+.+ .|... |.||+++..+....+... ........++|.+.. ..+|.| .|+
T Consensus 2 ~~V~l~~~p~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~--~~~~~~~~stlt~~~-~r~D~g~~~s 78 (100)
T cd05755 2 DSVELSPLPSWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDN--TKSPVNAPATITITV-DREDHGANFS 78 (100)
T ss_pred ceEEEecCCCcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccc--cCCCceeEEEEEEec-chhhCCcEEE
Confidence 35677777778999999999999997 77766 799999998874332210 111223445676654 455555 999
Q ss_pred EEEeCCCC
Q psy14540 79 CTATNRVG 86 (291)
Q Consensus 79 C~~~~~~~ 86 (291)
|++.....
T Consensus 79 C~A~l~l~ 86 (100)
T cd05755 79 CETELDLR 86 (100)
T ss_pred EEEEeccC
Confidence 99986543
No 250
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=98.84 E-value=1.3e-08 Score=64.55 Aligned_cols=82 Identities=17% Similarity=0.235 Sum_probs=52.1
Q ss_pred ecCCcEEEEEEecC-CCCCeeEEEECCeecC--CC-----e-eEe-ce--EEeeccceEEEEEEeecCCCCCeEEEEEEe
Q psy14540 15 QPGPPVSLKCIATG-NPTPHISWKLDGYPLA--GD-----R-FVM-GQ--YMSLHGDVISHVNISSVRVEDSGIYQCTAT 82 (291)
Q Consensus 15 ~~g~~v~l~C~~~~-~~~~~v~W~~~~~~~~--~~-----~-~~~-~~--~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~ 82 (291)
..|++|+|+|.... .....+.|++....+. .. . ... .. .........++|+|.+++.+|+|.|.|.+.
T Consensus 2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~ 81 (97)
T cd05775 2 ILGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEIN 81 (97)
T ss_pred ccCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEE
Confidence 37999999998865 4456799998643221 11 0 000 00 011112335789999999999999999998
Q ss_pred CCCCc-eeeeeeEEE
Q psy14540 83 NRVGS-QTHSADMRV 96 (291)
Q Consensus 83 ~~~~~-~~~~~~l~v 96 (291)
...+. ....+.|.|
T Consensus 82 ~~~~~~~~~~f~L~v 96 (97)
T cd05775 82 TKNGVTITKEFTLHI 96 (97)
T ss_pred cCCCCeEEEEEEEEe
Confidence 66543 344555554
No 251
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=98.83 E-value=1.3e-08 Score=63.55 Aligned_cols=35 Identities=17% Similarity=0.306 Sum_probs=24.9
Q ss_pred eeecCCCceEEEEEeeC----------CCCCceeEEeECCEeccC
Q psy14540 116 IKVHSGDRAGVQCLVTK----------GDPPLTISWLKNGLPILS 150 (291)
Q Consensus 116 ~~~~~g~~~~l~C~~~~----------~~p~~~~~W~~~~~~~~~ 150 (291)
..+.+|+.+.|.|.... ..+...+.|+|++.....
T Consensus 10 ~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~ 54 (104)
T cd05896 10 YMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEE 54 (104)
T ss_pred EEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCC
Confidence 56789999999998622 122347999999755433
No 252
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=98.82 E-value=1.1e-07 Score=62.69 Aligned_cols=79 Identities=16% Similarity=0.337 Sum_probs=50.0
Q ss_pred ecceeeeecCCcEEEEEEecCCC----CCeeEEEECCe------ec-C--CCee-E--eceE---E---eeccceEEEEE
Q psy14540 8 KFIQQTLQPGPPVSLKCIATGNP----TPHISWKLDGY------PL-A--GDRF-V--MGQY---M---SLHGDVISHVN 65 (291)
Q Consensus 8 ~~~~~~v~~g~~v~l~C~~~~~~----~~~v~W~~~~~------~~-~--~~~~-~--~~~~---~---~~~~~~~~~l~ 65 (291)
.|..+.+.+|++++|.|.+.... ...+.|++... .+ . .... . ...+ . .......++|+
T Consensus 4 ~p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~ 83 (116)
T cd05715 4 TPREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIV 83 (116)
T ss_pred cCCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEE
Confidence 46677899999999999986422 25699987321 11 0 0000 0 0000 0 01122347899
Q ss_pred EeecCCCCCeEEEEEEeCCCC
Q psy14540 66 ISSVRVEDSGIYQCTATNRVG 86 (291)
Q Consensus 66 i~~~~~~d~G~y~C~~~~~~~ 86 (291)
|.+++.+|+|.|.|.+.+...
T Consensus 84 I~~v~~~D~G~Y~C~v~~~~~ 104 (116)
T cd05715 84 IHNLQFTDNGTYTCDVKNPPD 104 (116)
T ss_pred EeeCCcccCEEEEEEEEeCCC
Confidence 999999999999999986543
No 253
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=98.81 E-value=5.8e-08 Score=60.73 Aligned_cols=80 Identities=21% Similarity=0.277 Sum_probs=52.1
Q ss_pred CcEEEEEEecC-CCCCeeEEEECCe----ecC--C--------CeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEe
Q psy14540 18 PPVSLKCIATG-NPTPHISWKLDGY----PLA--G--------DRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTAT 82 (291)
Q Consensus 18 ~~v~l~C~~~~-~~~~~v~W~~~~~----~~~--~--------~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~ 82 (291)
++++|.|.+.. ....+|+|.|... .+. . ..+.........+...++|.|.|++.+|+|.|+|.+.
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v~ 80 (96)
T cd05887 1 KNVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDIGVYICKAV 80 (96)
T ss_pred CCEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCccccEEEEEEEE
Confidence 47899999975 3345799988321 111 0 0111111111123345789999999999999999976
Q ss_pred -CCCCceeeeeeEEEE
Q psy14540 83 -NRVGSQTHSADMRVY 97 (291)
Q Consensus 83 -~~~~~~~~~~~l~v~ 97 (291)
.+.|.....+.|.|+
T Consensus 81 tfP~G~~~~~~~l~~~ 96 (96)
T cd05887 81 TFPLGNTQSSTTVTVL 96 (96)
T ss_pred eCCCCCeeEEEEEEEC
Confidence 678888888888763
No 254
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=98.80 E-value=2.2e-08 Score=65.91 Aligned_cols=80 Identities=16% Similarity=0.243 Sum_probs=53.8
Q ss_pred ceeecceeeeecCCcEEEEEEec-CCCCCeeEEEECCe-----ecC---CC--------eeEece-EEeeccceEEEEEE
Q psy14540 5 LIYKFIQQTLQPGPPVSLKCIAT-GNPTPHISWKLDGY-----PLA---GD--------RFVMGQ-YMSLHGDVISHVNI 66 (291)
Q Consensus 5 ~~~~~~~~~v~~g~~v~l~C~~~-~~~~~~v~W~~~~~-----~~~---~~--------~~~~~~-~~~~~~~~~~~l~i 66 (291)
+...|....+.+|+++.|.|... ......+.|++... .+. .. .+.... .........++|.|
T Consensus 4 vt~~~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i 83 (114)
T PF07686_consen 4 VTQPPSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTI 83 (114)
T ss_dssp EEEEESEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEE
T ss_pred EEEeCCeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEE
Confidence 34557888999999999999998 44566799998322 110 00 000000 11112234578999
Q ss_pred eecCCCCCeEEEEEEeCC
Q psy14540 67 SSVRVEDSGIYQCTATNR 84 (291)
Q Consensus 67 ~~~~~~d~G~y~C~~~~~ 84 (291)
.+++.+|+|.|.|.+...
T Consensus 84 ~~l~~~DsG~Y~C~v~~~ 101 (114)
T PF07686_consen 84 KNLQPSDSGTYFCQVSTS 101 (114)
T ss_dssp SSESGGGEEEEEEEEEES
T ss_pred CCCCcCcCEEEEEEEEEC
Confidence 999999999999999854
No 255
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.80 E-value=1.7e-07 Score=56.45 Aligned_cols=77 Identities=19% Similarity=0.260 Sum_probs=48.7
Q ss_pred EEEEEEecC-CCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCc-eeeeeeEEEE
Q psy14540 20 VSLKCIATG-NPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGS-QTHSADMRVY 97 (291)
Q Consensus 20 v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~-~~~~~~l~v~ 97 (291)
+.|.|.+.+ .|...|+|+++++++...... ...........++|.|......|...|+|++.|..-. ......|.|+
T Consensus 2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~-~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~V~ 80 (82)
T cd05883 2 IELNCTAMASKPAATIRWFKGNKELTGKSTV-EETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYLEVQ 80 (82)
T ss_pred EEEEEEecCCCCCCEEEEEECCEECcCcccc-eeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccCCceeeEEEEEE
Confidence 689999987 889999999999998743211 0001111234577777555555555999999876532 3333444443
No 256
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=98.79 E-value=1.3e-07 Score=61.11 Aligned_cols=39 Identities=18% Similarity=0.440 Sum_probs=33.1
Q ss_pred eEEEEEEeecCCCCCeEEEEEEeCCCCceeeeeeEEEEc
Q psy14540 60 VISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYD 98 (291)
Q Consensus 60 ~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~l~v~~ 98 (291)
+.++|.|.+++.+|+|.|+|.+.+........+.|.|..
T Consensus 77 g~asL~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~G 115 (117)
T cd05901 77 GDASLTIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVSG 115 (117)
T ss_pred CceEEEEcccccccCEEEEEEEEECCcccEEEEEEEEEE
Confidence 458899999999999999999988777777777777753
No 257
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.78 E-value=4.8e-08 Score=62.27 Aligned_cols=71 Identities=17% Similarity=0.370 Sum_probs=47.5
Q ss_pred eeecCCcEEEEEEecCC--CCCeeEEEECCe--ecC-----C-C--eeEeceEEeeccceEEEEEEeecCCCCCeEEEEE
Q psy14540 13 TLQPGPPVSLKCIATGN--PTPHISWKLDGY--PLA-----G-D--RFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCT 80 (291)
Q Consensus 13 ~v~~g~~v~l~C~~~~~--~~~~v~W~~~~~--~~~-----~-~--~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~ 80 (291)
.+.+|++++|.|.+... ....+.||+... ... . . .....+.........+.|+|.+++.+|+|.|.|.
T Consensus 2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~ 81 (98)
T cd04984 2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYYCQ 81 (98)
T ss_pred ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEEEE
Confidence 57899999999998764 456799998321 111 0 0 0001122222333567899999999999999999
Q ss_pred EeC
Q psy14540 81 ATN 83 (291)
Q Consensus 81 ~~~ 83 (291)
+.+
T Consensus 82 ~~~ 84 (98)
T cd04984 82 VWD 84 (98)
T ss_pred Ecc
Confidence 864
No 258
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=98.78 E-value=9.4e-08 Score=60.96 Aligned_cols=78 Identities=13% Similarity=0.175 Sum_probs=48.8
Q ss_pred cEEEEEEecCCC---CCeeEEEECCe-----ecC-----CCeeEe-----ceEE-eeccceEEEEEEeecCCCCCeEEEE
Q psy14540 19 PVSLKCIATGNP---TPHISWKLDGY-----PLA-----GDRFVM-----GQYM-SLHGDVISHVNISSVRVEDSGIYQC 79 (291)
Q Consensus 19 ~v~l~C~~~~~~---~~~v~W~~~~~-----~~~-----~~~~~~-----~~~~-~~~~~~~~~l~i~~~~~~d~G~y~C 79 (291)
+++|+|.+.... ...|.|+|... .+. .+.... .... .......++|+|.+++.+|+|.|.|
T Consensus 2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~C 81 (100)
T cd05888 2 DTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEGKYKC 81 (100)
T ss_pred CEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccceEEEE
Confidence 689999987533 34799998321 110 000000 0111 1112345779999999999999999
Q ss_pred EEeC-CCCceeeeeeEEE
Q psy14540 80 TATN-RVGSQTHSADMRV 96 (291)
Q Consensus 80 ~~~~-~~~~~~~~~~l~v 96 (291)
.+.+ +.|.....+.|.|
T Consensus 82 ~v~~~p~g~~~~~~~L~V 99 (100)
T cd05888 82 RVITFPAGNFEAELVLTV 99 (100)
T ss_pred EEEeCCCCCeeeEEEEEe
Confidence 9884 6666666666665
No 259
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=98.78 E-value=3.6e-08 Score=60.01 Aligned_cols=63 Identities=25% Similarity=0.471 Sum_probs=47.7
Q ss_pred ceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEE
Q psy14540 115 SIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVAS 184 (291)
Q Consensus 115 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~ 184 (291)
...+..|+.+.|.|.. . .+...+.|++++..+..+.+..... ..|.|..++..|+|.|.|.+.
T Consensus 5 ~~tv~~g~~v~L~C~~-~-s~~A~v~W~~ng~~l~~~~r~~~~~-----~GLlI~~~~~~dsG~Y~C~s~ 67 (85)
T cd05872 5 NRTVAPGADVVLPCQL-R-SNLASPVWLFNGTPLNAQFSYRVGT-----DGLLILVTSPEHSGTYRCYSE 67 (85)
T ss_pred EEEEecCCCEEEECCC-C-CCCccEEEEECCcccCCCcceEEeC-----CCCEEEECCHhhCEEEEEEEe
Confidence 3678899999999998 3 3466999999999986654444332 237788888888888888875
No 260
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=98.77 E-value=1.3e-07 Score=59.68 Aligned_cols=78 Identities=18% Similarity=0.338 Sum_probs=49.7
Q ss_pred cEEEEEEecC-CC---CCeeEEEECC--e--ecC--CC--------eeEeceEEeeccceEEEEEEeecCCCCCeEEEEE
Q psy14540 19 PVSLKCIATG-NP---TPHISWKLDG--Y--PLA--GD--------RFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCT 80 (291)
Q Consensus 19 ~v~l~C~~~~-~~---~~~v~W~~~~--~--~~~--~~--------~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~ 80 (291)
.++|.|.+.. .+ ..+|+|.+.. . .+. .. .+.............++|.|.+++.+|+|.|+|.
T Consensus 2 ~v~L~C~f~~~~~~~~~~~V~W~k~~~~~~~~va~y~~~~g~~~~~~f~~Rv~f~~~~~~daSi~i~nl~~~D~G~Y~C~ 81 (99)
T cd05886 2 DVVLHCSFINPLPPVKITQVTWQKLTNGSKQNVAIYNPSMGVSVLPPYRERVTFKNPSFEDGTISLSRLELEDEGVYICE 81 (99)
T ss_pred cEEEEeEeecCCCCCCeEEEEEEECCCCCceEEEEECCcCCcccCccccCcEEEcCCCCCcceEEEcCCccccCEEEEEE
Confidence 6899999974 22 2259998832 1 110 10 0111111111122447899999999999999999
Q ss_pred EeC-CCCceeeeeeEEE
Q psy14540 81 ATN-RVGSQTHSADMRV 96 (291)
Q Consensus 81 ~~~-~~~~~~~~~~l~v 96 (291)
+.+ +.|..+..+.|.|
T Consensus 82 v~t~P~g~~~~~~~L~V 98 (99)
T cd05886 82 FATFPTGNRESQLNLTV 98 (99)
T ss_pred EEeCCCCCeEEEEEEEE
Confidence 997 6777777888776
No 261
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=98.77 E-value=2.8e-07 Score=56.44 Aligned_cols=27 Identities=22% Similarity=0.500 Sum_probs=23.8
Q ss_pred eEEEEEeeCCCCCceeEEeECCEeccC
Q psy14540 124 AGVQCLVTKGDPPLTISWLKNGLPILS 150 (291)
Q Consensus 124 ~~l~C~~~~~~p~~~~~W~~~~~~~~~ 150 (291)
+.|.|.+.+++|.+.|+|+++|.++..
T Consensus 2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~ 28 (83)
T cd07705 2 AKLRCTSSGSKPAANIKWRKGDQELEG 28 (83)
T ss_pred EEEEEEecCccCCCEeEEEECCEECCC
Confidence 689999987889999999999988754
No 262
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=98.76 E-value=1.6e-07 Score=60.86 Aligned_cols=39 Identities=26% Similarity=0.438 Sum_probs=32.6
Q ss_pred ccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEe
Q psy14540 200 EYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVN 238 (291)
Q Consensus 200 ~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~ 238 (291)
....+|.|.+++.+|+|.|.|.+.+..+.....+.|.|.
T Consensus 65 ~~~~sL~I~~v~~sD~G~Y~C~v~~~~~~~~~~v~L~V~ 103 (106)
T cd05714 65 PGDASLVITDLRLEDSGRYRCEVIDGIEDEQDTVELEVR 103 (106)
T ss_pred CCcceEEECCCCHHHCEEEEEEEEcCCCceEEEEEEEEE
Confidence 346789999999999999999999876666777777765
No 263
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.76 E-value=6.9e-08 Score=62.51 Aligned_cols=74 Identities=26% Similarity=0.411 Sum_probs=49.2
Q ss_pred eeecCCcEEEEEEecCC-CCCeeEEEECCee-----cC---CC-----eeEeceEE-e-eccceEEEEEEeecCCCCCeE
Q psy14540 13 TLQPGPPVSLKCIATGN-PTPHISWKLDGYP-----LA---GD-----RFVMGQYM-S-LHGDVISHVNISSVRVEDSGI 76 (291)
Q Consensus 13 ~v~~g~~v~l~C~~~~~-~~~~v~W~~~~~~-----~~---~~-----~~~~~~~~-~-~~~~~~~~l~i~~~~~~d~G~ 76 (291)
++.+|++++|.|.+... +...+.|++.... +. .. .....+.. . ......++|+|.+++.+|+|.
T Consensus 2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~ 81 (105)
T cd00099 2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSAV 81 (105)
T ss_pred eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCEE
Confidence 57899999999999875 6778999984321 10 00 00001111 1 111256789999999999999
Q ss_pred EEEEEeCCCC
Q psy14540 77 YQCTATNRVG 86 (291)
Q Consensus 77 y~C~~~~~~~ 86 (291)
|.|.+.+..+
T Consensus 82 Y~C~v~~~~~ 91 (105)
T cd00099 82 YYCAVSLSGG 91 (105)
T ss_pred EEEEEecCCC
Confidence 9999986543
No 264
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=98.75 E-value=9.3e-08 Score=61.60 Aligned_cols=82 Identities=23% Similarity=0.368 Sum_probs=52.7
Q ss_pred CCcEEEEEEecCCC-------CCeeEEEECC-----eec----C-CCeeE-e---ceEEee----ccceEEEEEEeecCC
Q psy14540 17 GPPVSLKCIATGNP-------TPHISWKLDG-----YPL----A-GDRFV-M---GQYMSL----HGDVISHVNISSVRV 71 (291)
Q Consensus 17 g~~v~l~C~~~~~~-------~~~v~W~~~~-----~~~----~-~~~~~-~---~~~~~~----~~~~~~~l~i~~~~~ 71 (291)
|++++|+|.+.-.| .+.|.|.+.. ... . ..... . ..+... ...+.++|.|.+++.
T Consensus 2 ~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~~ 81 (110)
T cd05902 2 SSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLRY 81 (110)
T ss_pred CCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCCH
Confidence 78999999976322 4679999841 111 0 11100 0 011111 113458899999999
Q ss_pred CCCeEEEEEEeCCCCceeeeeeEEEEc
Q psy14540 72 EDSGIYQCTATNRVGSQTHSADMRVYD 98 (291)
Q Consensus 72 ~d~G~y~C~~~~~~~~~~~~~~l~v~~ 98 (291)
+|+|.|.|.+..........+.|.|..
T Consensus 82 ~D~G~Y~C~v~~g~~~~~~~v~L~V~g 108 (110)
T cd05902 82 SDSGTYRCEVVLGINDEQDTVPLEVTG 108 (110)
T ss_pred HHCEEEEEEEEECCcccEEEEEEEEEE
Confidence 999999999987665677777777753
No 265
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.73 E-value=1.3e-07 Score=61.65 Aligned_cols=32 Identities=16% Similarity=0.395 Sum_probs=26.1
Q ss_pred CcceeecCCCceEEEEEeeCCCCCceeEEeECC
Q psy14540 113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNG 145 (291)
Q Consensus 113 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~ 145 (291)
+..+.+.+|++++|.|.+ .+.+...+.|++..
T Consensus 5 ~~~v~~~~G~~v~L~C~~-~~~~~~~v~W~k~~ 36 (109)
T cd04983 5 PQSLSVQEGENVTLNCNY-STSTFYYLFWYRQY 36 (109)
T ss_pred CCceEEcCCCCEEEEEEE-CCCCccEEEEEEEC
Confidence 345788899999999998 45577899999854
No 266
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.72 E-value=1.6e-07 Score=60.81 Aligned_cols=37 Identities=24% Similarity=0.425 Sum_probs=33.0
Q ss_pred ceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEe
Q psy14540 202 TSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVN 238 (291)
Q Consensus 202 ~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~ 238 (291)
..+|.|.+++.+|+|.|.|.+.+..+.....+.|.|.
T Consensus 67 ~~sL~I~~v~~~DsG~Y~C~v~~~~~~~~~~~~l~v~ 103 (106)
T cd05877 67 DASLVITDLRLEDYGRYRCEVIDGLEDESVVVALRLR 103 (106)
T ss_pred cEEEEEccCChHHCEEEEEEEEecccceEEEEEEEEE
Confidence 5679999999999999999999988888889988885
No 267
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=98.71 E-value=3.1e-07 Score=56.22 Aligned_cols=65 Identities=23% Similarity=0.452 Sum_probs=44.2
Q ss_pred EEEEEEecC-CCCCeeEEEECCeecCCCeeEeceEEeeccc---eEEEEEEeecCCCCCeEEEEEEeCCCC
Q psy14540 20 VSLKCIATG-NPTPHISWKLDGYPLAGDRFVMGQYMSLHGD---VISHVNISSVRVEDSGIYQCTATNRVG 86 (291)
Q Consensus 20 v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~G~y~C~~~~~~~ 86 (291)
++|.|.+.+ +|.+.|+|+++|+.+......... ...+. ..+.|.+......|...|+|++.+...
T Consensus 2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~~~~~--~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l 70 (83)
T cd07705 2 AKLRCTSSGSKPAANIKWRKGDQELEGAPTSVLE--DGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESL 70 (83)
T ss_pred EEEEEEecCccCCCEeEEEECCEECCCcceeEEE--CCCCCEEEEEEEEEEEecchhCCCEEEEEEECccc
Confidence 689999998 688899999999988743221111 11111 235566656666677799999997654
No 268
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=98.71 E-value=1.6e-07 Score=58.82 Aligned_cols=65 Identities=14% Similarity=0.255 Sum_probs=41.4
Q ss_pred eeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEec
Q psy14540 116 IKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNT 186 (291)
Q Consensus 116 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~ 186 (291)
..+.+|++|+|.|.. ..+...+.|+++|....... .........+.|..++.+|+|.|+|...+.
T Consensus 11 ~vV~~G~~VtL~C~~--~~~~~~f~l~k~g~~~~~~~----~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~ 75 (91)
T cd05751 11 SVVPLGKPVTLRCQG--PYGAVEYRLYREGSTFAVKK----PPEPQNKAKFFIPSMKREHAGRYRCYYRSG 75 (91)
T ss_pred CccCCCCcEEEEEec--CCCCCEEEEEECCCCccccc----cCCCceeEEEEccCCChhHCEEEEEEEECC
Confidence 467899999999987 46677899999987543210 111122345666666666666666665543
No 269
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=98.70 E-value=2.2e-07 Score=56.85 Aligned_cols=26 Identities=23% Similarity=0.547 Sum_probs=23.3
Q ss_pred eEEEEEeeCCCCCceeEEeECCEecc
Q psy14540 124 AGVQCLVTKGDPPLTISWLKNGLPIL 149 (291)
Q Consensus 124 ~~l~C~~~~~~p~~~~~W~~~~~~~~ 149 (291)
+.|.|.+.+++|.+.++|+++++.+.
T Consensus 2 ~~L~C~~~~~~P~~~v~W~~~~~~l~ 27 (82)
T cd05761 2 VELTCTSSGSKPAATIRWFKGDKELK 27 (82)
T ss_pred EEEEEEecCcCcCCeEEEEECCEEcc
Confidence 68999998788999999999998885
No 270
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.70 E-value=1.6e-07 Score=61.91 Aligned_cols=79 Identities=20% Similarity=0.320 Sum_probs=52.9
Q ss_pred ceeecceeeeecCCcEEEEEEecCC-CCCeeEEEEC--CeecC-----CCee--E-eceEEee--ccceEEEEEEeecCC
Q psy14540 5 LIYKFIQQTLQPGPPVSLKCIATGN-PTPHISWKLD--GYPLA-----GDRF--V-MGQYMSL--HGDVISHVNISSVRV 71 (291)
Q Consensus 5 ~~~~~~~~~v~~g~~v~l~C~~~~~-~~~~v~W~~~--~~~~~-----~~~~--~-~~~~~~~--~~~~~~~l~i~~~~~ 71 (291)
+.+.|..+.+.+|++++|.|.+... ....+.|++. +..+. .... . ..+.... .....++|.|.+++.
T Consensus 2 v~q~~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~ 81 (116)
T cd07706 2 VTQAQPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQL 81 (116)
T ss_pred cEEeCCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCH
Confidence 4567788899999999999998753 4567999983 22110 0000 0 0111111 233468899999999
Q ss_pred CCCeEEEEEEeC
Q psy14540 72 EDSGIYQCTATN 83 (291)
Q Consensus 72 ~d~G~y~C~~~~ 83 (291)
+|+|.|.|.+..
T Consensus 82 ~Dsg~Y~C~~~~ 93 (116)
T cd07706 82 EDSAKYFCALST 93 (116)
T ss_pred HHCEEEEEEEEC
Confidence 999999999874
No 271
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=98.68 E-value=3e-07 Score=56.31 Aligned_cols=66 Identities=21% Similarity=0.333 Sum_probs=43.3
Q ss_pred EEEEEEecC-CCCCeeEEEECCeecCCCeeEeceEEeecc--ceEEEEEEeecCCCCCeEEEEEEeCCCCc
Q psy14540 20 VSLKCIATG-NPTPHISWKLDGYPLAGDRFVMGQYMSLHG--DVISHVNISSVRVEDSGIYQCTATNRVGS 87 (291)
Q Consensus 20 v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~~~~~~ 87 (291)
+.|.|.+.+ .|.+.|.|+++++.+.... .. ......+ ...+.|.+......+.+.|+|.+.+....
T Consensus 2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~-~~-~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~ 70 (82)
T cd05761 2 VELTCTSSGSKPAATIRWFKGDKELKGVK-LK-EEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALK 70 (82)
T ss_pred EEEEEEecCcCcCCeEEEEECCEEccCce-ee-EecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcC
Confidence 689999987 6888999999999886332 11 1111111 13355666555555667999999876543
No 272
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.68 E-value=2.7e-07 Score=56.35 Aligned_cols=68 Identities=16% Similarity=0.294 Sum_probs=44.6
Q ss_pred EEEEEEecC-CCCCeeEEEECCeecCCCeeEeceE-EeeccceEEEEEEeecCCCCCeEEEEEEeCCCCc
Q psy14540 20 VSLKCIATG-NPTPHISWKLDGYPLAGDRFVMGQY-MSLHGDVISHVNISSVRVEDSGIYQCTATNRVGS 87 (291)
Q Consensus 20 v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~ 87 (291)
++|.|.+.+ +|...|+|+++|..+.......... ........+.|.+......+...|+|++.+....
T Consensus 2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l~ 71 (83)
T cd05884 2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESLN 71 (83)
T ss_pred EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhcC
Confidence 689999998 7788999999999886432211110 0001123466777655566667999999876543
No 273
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=98.68 E-value=1.9e-07 Score=59.54 Aligned_cols=70 Identities=21% Similarity=0.285 Sum_probs=48.3
Q ss_pred eeeecCCcEEEEEEecC-CCCCeeEEEECCeecC--------------CCeeEeceEEeeccceEEEEEEeecCCCCCeE
Q psy14540 12 QTLQPGPPVSLKCIATG-NPTPHISWKLDGYPLA--------------GDRFVMGQYMSLHGDVISHVNISSVRVEDSGI 76 (291)
Q Consensus 12 ~~v~~g~~v~l~C~~~~-~~~~~v~W~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~ 76 (291)
+.+.+|++++|.|.+.. .....+.|++....-. .+++.. ........+.|+|.+++.+|+|.
T Consensus 2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~---~~~~~~~~~~L~I~~v~~~DsG~ 78 (98)
T cd05716 2 VTGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSL---TDDPDNGVFTVTLNQLRKEDAGW 78 (98)
T ss_pred EEEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEE---EecCCCCEEEEEEcCCCHHHCEE
Confidence 46789999999999875 3466799998532110 111111 11223456889999999999999
Q ss_pred EEEEEeCC
Q psy14540 77 YQCTATNR 84 (291)
Q Consensus 77 y~C~~~~~ 84 (291)
|.|.+...
T Consensus 79 Y~C~~~~~ 86 (98)
T cd05716 79 YWCGVGDD 86 (98)
T ss_pred EEEEcccC
Confidence 99998743
No 274
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=98.68 E-value=1e-07 Score=60.45 Aligned_cols=72 Identities=24% Similarity=0.325 Sum_probs=49.6
Q ss_pred ecCCcEEEEEEecCC-C-CCeeEEEECCeecCCCee--EeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCC
Q psy14540 15 QPGPPVSLKCIATGN-P-TPHISWKLDGYPLAGDRF--VMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVG 86 (291)
Q Consensus 15 ~~g~~v~l~C~~~~~-~-~~~v~W~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~ 86 (291)
..|+.++|.|.+.+. | .+.++|+++|..+..... .............+.|.+......|.+.|+|.+.+...
T Consensus 11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~ 86 (95)
T cd00098 11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESL 86 (95)
T ss_pred HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCC
Confidence 478999999999984 5 468999999998874432 11111111112335677777777799999999987654
No 275
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=98.67 E-value=2.8e-07 Score=57.91 Aligned_cols=34 Identities=18% Similarity=0.199 Sum_probs=29.4
Q ss_pred eecCCCceEEEEEeeCCCCCce--eEEeECCEeccC
Q psy14540 117 KVHSGDRAGVQCLVTKGDPPLT--ISWLKNGLPILS 150 (291)
Q Consensus 117 ~~~~g~~~~l~C~~~~~~p~~~--~~W~~~~~~~~~ 150 (291)
.+.+|+.++|.|.+.++.|.+. +.||+++..+..
T Consensus 12 ~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~ 47 (100)
T cd05755 12 WQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSR 47 (100)
T ss_pred cccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEccc
Confidence 4578999999999988899886 799999988854
No 276
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.67 E-value=2e-07 Score=60.85 Aligned_cols=31 Identities=13% Similarity=0.332 Sum_probs=25.3
Q ss_pred CcceeecCCCceEEEEEeeCCCCCceeEEeECC
Q psy14540 113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNG 145 (291)
Q Consensus 113 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~ 145 (291)
+....+.+|++++|.|.+ .+ +...+.||+..
T Consensus 5 p~~~~v~~G~~v~l~C~~-~~-~~~~v~Wykq~ 35 (110)
T cd05899 5 PRYLIKGRGQSVTLRCSQ-TS-GHDNMYWYRQD 35 (110)
T ss_pred CCceEEcCCCcEEEEEEE-CC-CCCEEEEEEEC
Confidence 345788999999999998 45 67789999854
No 277
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=98.67 E-value=2.7e-07 Score=57.78 Aligned_cols=77 Identities=19% Similarity=0.352 Sum_probs=46.8
Q ss_pred CcEEEEEEecC-CCCCeeEEEECCe----ecC------C----CeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEe
Q psy14540 18 PPVSLKCIATG-NPTPHISWKLDGY----PLA------G----DRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTAT 82 (291)
Q Consensus 18 ~~v~l~C~~~~-~~~~~v~W~~~~~----~~~------~----~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~ 82 (291)
+.++|.|.... .....|+|.|-.. .+. . ..+..............+|.|.|++.+|+|.|+|.+.
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~~ 80 (96)
T cd05889 1 EKMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEEDVGLYCCSLV 80 (96)
T ss_pred CCEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcccCEEEEEEEE
Confidence 47899999875 3456689998422 111 0 0110000011111234789999999999999999986
Q ss_pred -CCCCceeeeeeE
Q psy14540 83 -NRVGSQTHSADM 94 (291)
Q Consensus 83 -~~~~~~~~~~~l 94 (291)
.+.|...+.+.+
T Consensus 81 t~P~g~~~~~i~~ 93 (96)
T cd05889 81 TYPQGSWEKVIEV 93 (96)
T ss_pred eCCCCCeEEEEEE
Confidence 456666665543
No 278
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=98.67 E-value=2.4e-07 Score=58.72 Aligned_cols=75 Identities=27% Similarity=0.497 Sum_probs=47.5
Q ss_pred cCCCceEEEEEeeCCCC-CceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEE
Q psy14540 119 HSGDRAGVQCLVTKGDP-PLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLR 197 (291)
Q Consensus 119 ~~g~~~~l~C~~~~~~p-~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~ 197 (291)
..|+.++|.|.+.+.+| ...++|+++|..+..... .........|.|+.
T Consensus 11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~--------------~~~~~~~~~gt~~~---------------- 60 (95)
T cd00098 11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVT--------------TTPPVPNSDGTYSV---------------- 60 (95)
T ss_pred HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCcee--------------ccccccCCCCCEEE----------------
Confidence 46889999999965556 478999999998865432 11122233344433
Q ss_pred EeccceEEEEeeeecCCCeeEEEEeeeCCc
Q psy14540 198 VNEYTSSLSIATLSTGHSGNYTCVASNTVA 227 (291)
Q Consensus 198 ~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~ 227 (291)
.+.|.+.....++.+.|+|.|.+...
T Consensus 61 ----~s~l~v~~~~~~~~~~y~C~v~h~~~ 86 (95)
T cd00098 61 ----SSQLTVSPSDWNSGDTYTCVVTHESL 86 (95)
T ss_pred ----EEEEEECHHHhCCCCCEEEEEEeCCC
Confidence 23455555555677777777776653
No 279
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.66 E-value=3.1e-07 Score=55.15 Aligned_cols=77 Identities=17% Similarity=0.341 Sum_probs=52.5
Q ss_pred eeeeecCCcEEEEEEecC--CCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCce
Q psy14540 11 QQTLQPGPPVSLKCIATG--NPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQ 88 (291)
Q Consensus 11 ~~~v~~g~~v~l~C~~~~--~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~ 88 (291)
+..+..|++++|+|.... .|.+.++|...+...-. .......+|.+.+++..|+|.++|.+.......
T Consensus 8 ~~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~----------~~~~~~ktL~~~qv~~qdSG~WtC~V~~~~k~~ 77 (88)
T cd07694 8 SDHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQ----------ILNQDKKTLNLVQLGPNDSGTWDCIVSVNSSEK 77 (88)
T ss_pred CCeeecCCcEEEEEecCCCCCCCccEEEeCCCCccce----------eccCCccEEEeceeCcccCCEEEEEEEECceEE
Confidence 346889999999999965 33558999975543221 001122458899999999999999997554444
Q ss_pred eeeeeEEEE
Q psy14540 89 THSADMRVY 97 (291)
Q Consensus 89 ~~~~~l~v~ 97 (291)
...+.+.|.
T Consensus 78 ~~~~~V~Vl 86 (88)
T cd07694 78 TLKLDIKVL 86 (88)
T ss_pred EEEeeEEEE
Confidence 455555554
No 280
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.65 E-value=5.5e-07 Score=58.31 Aligned_cols=38 Identities=21% Similarity=0.479 Sum_probs=31.8
Q ss_pred cceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEe
Q psy14540 201 YTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVN 238 (291)
Q Consensus 201 ~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~ 238 (291)
....|.|.+++.+|+|.|.|.+.+.....+..+.|.|.
T Consensus 72 ~~asL~I~nl~~sDsG~Y~C~V~~g~~~~~~~v~l~v~ 109 (112)
T cd05900 72 SDATLEITELRSNDSGTYRCEVMHGIEDNYDTVEVQVK 109 (112)
T ss_pred CCcEEEEeecccccCEEEEEEEecCCCCceeEEEEEEE
Confidence 46789999999999999999999777677777777664
No 281
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=98.65 E-value=1.1e-06 Score=57.40 Aligned_cols=27 Identities=26% Similarity=0.422 Sum_probs=22.9
Q ss_pred cceEEEEeeeecCCCeeEEEEeeeCCc
Q psy14540 201 YTSSLSIATLSTGHSGNYTCVASNTVA 227 (291)
Q Consensus 201 ~~~~l~i~~~~~~~~g~y~C~~~~~~~ 227 (291)
.+.++.|.+++..|.|.|+|.+.|...
T Consensus 78 ~daSI~I~nv~~sD~G~Y~C~v~n~p~ 104 (116)
T cd05879 78 KDGSIVIHNLDYTDNGTFTCDVKNPPD 104 (116)
T ss_pred CeeEEEEccCCcccCEEEEEEEEcCCC
Confidence 466889999999999999999998764
No 282
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=98.65 E-value=3.3e-07 Score=60.58 Aligned_cols=77 Identities=21% Similarity=0.185 Sum_probs=50.2
Q ss_pred eecceeeeecCCcEEEEEEecCCC------CCeeEEEECCee------c--CC-Ce-e--Ee-ceEEe--eccceEEEEE
Q psy14540 7 YKFIQQTLQPGPPVSLKCIATGNP------TPHISWKLDGYP------L--AG-DR-F--VM-GQYMS--LHGDVISHVN 65 (291)
Q Consensus 7 ~~~~~~~v~~g~~v~l~C~~~~~~------~~~v~W~~~~~~------~--~~-~~-~--~~-~~~~~--~~~~~~~~l~ 65 (291)
..|..+.+.+|++|+|.|.+.... ...+.|++.... + .. .. . .. .+... ......++|.
T Consensus 4 q~P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~ 83 (119)
T cd05712 4 WMPKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLL 83 (119)
T ss_pred cCCCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEE
Confidence 346778899999999999876321 345999984321 1 00 00 0 00 11111 1244568899
Q ss_pred EeecCCCCCeEEEEEEeC
Q psy14540 66 ISSVRVEDSGIYQCTATN 83 (291)
Q Consensus 66 i~~~~~~d~G~y~C~~~~ 83 (291)
|.+++.+|+|.|.|.+..
T Consensus 84 I~~l~~~Dsg~Y~C~~~~ 101 (119)
T cd05712 84 ISDAQPEDSGKYFFRVEL 101 (119)
T ss_pred EccCChhhCeEEEEEEEc
Confidence 999999999999999864
No 283
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.64 E-value=3.9e-07 Score=55.69 Aligned_cols=27 Identities=26% Similarity=0.549 Sum_probs=23.8
Q ss_pred eEEEEEeeCCCCCceeEEeECCEeccC
Q psy14540 124 AGVQCLVTKGDPPLTISWLKNGLPILS 150 (291)
Q Consensus 124 ~~l~C~~~~~~p~~~~~W~~~~~~~~~ 150 (291)
++|.|.+.+++|...++|+++|..+..
T Consensus 2 ~~LtC~a~gf~P~~~itW~kng~~l~~ 28 (83)
T cd05884 2 MQLTCKTSGSKPAADIRWFKNDKEIKD 28 (83)
T ss_pred EEEEEEeCCccCCCEEEEEECCEECcC
Confidence 689999988899999999999998754
No 284
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.62 E-value=2.4e-07 Score=58.89 Aligned_cols=84 Identities=15% Similarity=0.300 Sum_probs=52.8
Q ss_pred CCcceeec-ceeeeecCCcEEEEEEecC-CC-CCeeEEEECCeecCCCeeEeceEEeeccc---eEEEEEEeecCCCCCe
Q psy14540 2 HPQLIYKF-IQQTLQPGPPVSLKCIATG-NP-TPHISWKLDGYPLAGDRFVMGQYMSLHGD---VISHVNISSVRVEDSG 75 (291)
Q Consensus 2 ~p~~~~~~-~~~~v~~g~~v~l~C~~~~-~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~G 75 (291)
||.+.+-+ .......++.++|.|.+.+ .| ...|.|++||+.+..+... .......+. ..+.|.+....+.+..
T Consensus 1 pP~V~v~~p~~~~~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~-~~~~~~~dgty~~~s~L~v~~~~w~~~~ 79 (100)
T cd07699 1 APSVTIFPPSSEELEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQT-STTEQQSDNTYSLSSYLTLTKSDWNKHK 79 (100)
T ss_pred CCeEEEECCCHHHHccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEec-cccEECCCCCEEEEEEEEEcHHHhCCCC
Confidence 56665443 4444557888999999998 55 6779999999988633211 111111111 2355666555555567
Q ss_pred EEEEEEeCCCC
Q psy14540 76 IYQCTATNRVG 86 (291)
Q Consensus 76 ~y~C~~~~~~~ 86 (291)
.|+|.+.+...
T Consensus 80 ~~sC~V~H~~l 90 (100)
T cd07699 80 VYTCEVTHEGL 90 (100)
T ss_pred eEEEEEEecCC
Confidence 99999987543
No 285
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=98.60 E-value=9.7e-07 Score=57.30 Aligned_cols=38 Identities=26% Similarity=0.461 Sum_probs=32.0
Q ss_pred cceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEe
Q psy14540 201 YTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVN 238 (291)
Q Consensus 201 ~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~ 238 (291)
....|.|.+++.+|+|.|.|.+..........+.|.|.
T Consensus 70 ~~asL~I~~l~~sD~G~Y~C~v~~~~~~~~~~v~l~V~ 107 (110)
T cd05878 70 GDASLEISRLRSSDSGVYRCEVMHGIEDEQDTVPLEVT 107 (110)
T ss_pred CcEEEEECCCChhhCEEEEEEEEeCCCcceEEEEEEEE
Confidence 46789999999999999999999877777777777775
No 286
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.60 E-value=3.1e-07 Score=59.46 Aligned_cols=28 Identities=21% Similarity=0.571 Sum_probs=22.4
Q ss_pred eecCCCceEEEEEeeCCC-CCceeEEeECC
Q psy14540 117 KVHSGDRAGVQCLVTKGD-PPLTISWLKNG 145 (291)
Q Consensus 117 ~~~~g~~~~l~C~~~~~~-p~~~~~W~~~~ 145 (291)
.+.+|+.++|.|.+. .. +...+.|++..
T Consensus 2 ~v~~G~~v~L~C~~~-~~~~~~~v~W~k~~ 30 (105)
T cd00099 2 SVSEGESVTLSCTYS-GSFSSYYIFWYRQK 30 (105)
T ss_pred eecCCCCEEEEEEEe-CCcCcceEEEEEEC
Confidence 467899999999984 44 67789999854
No 287
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=98.59 E-value=2.3e-06 Score=53.30 Aligned_cols=81 Identities=15% Similarity=0.206 Sum_probs=49.3
Q ss_pred CCcceeecceeeeecCCcEEEEEEecC-CC-CCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEE
Q psy14540 2 HPQLIYKFIQQTLQPGPPVSLKCIATG-NP-TPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQC 79 (291)
Q Consensus 2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~-~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C 79 (291)
||.+.+-... .+..|+..+|.|.+.+ .| ...++|++||..+. +. .........+..+....-..+...+...|+|
T Consensus 1 pP~v~v~~~~-~~~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~-~~-~~~~~~p~~d~tyq~~s~l~~~~~~~~~ysC 77 (93)
T cd05770 1 TPKVQVYSRF-PAENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP-KV-EQSDLSFSKDWTFYLLKSTEFTPTKGDEYAC 77 (93)
T ss_pred CCEEEEEecC-CCcCCCceEEEEEEEEEeCCCCEEEEEECCEECC-Cc-EECcEEECCCCCEEEEEEEEECCCCCCeEEE
Confidence 4665553332 3456777899999998 44 56799999999877 32 2222222222222222222445667779999
Q ss_pred EEeCCC
Q psy14540 80 TATNRV 85 (291)
Q Consensus 80 ~~~~~~ 85 (291)
++.+..
T Consensus 78 ~V~H~~ 83 (93)
T cd05770 78 RVRHNS 83 (93)
T ss_pred EEEECC
Confidence 998754
No 288
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.57 E-value=4.7e-07 Score=57.60 Aligned_cols=76 Identities=20% Similarity=0.358 Sum_probs=49.1
Q ss_pred eecCCCceEEEEEeeCCCC-CceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceE
Q psy14540 117 KVHSGDRAGVQCLVTKGDP-PLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSN 195 (291)
Q Consensus 117 ~~~~g~~~~l~C~~~~~~p-~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~ 195 (291)
....++.++|.|.+.+.+| ...+.|++||..+..... ......+..|.|+..
T Consensus 13 ~~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~--------------~~~~~~~~dgty~~~------------- 65 (100)
T cd07699 13 ELEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQ--------------TSTTEQQSDNTYSLS------------- 65 (100)
T ss_pred HHccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEe--------------ccccEECCCCCEEEE-------------
Confidence 3446778999999977787 678999999998753210 011112334566542
Q ss_pred EEEeccceEEEEeeeecCCCeeEEEEeeeCC
Q psy14540 196 LRVNEYTSSLSIATLSTGHSGNYTCVASNTV 226 (291)
Q Consensus 196 ~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~ 226 (291)
+.|.+..-..+++..|+|.+.+..
T Consensus 66 -------s~L~v~~~~w~~~~~~sC~V~H~~ 89 (100)
T cd07699 66 -------SYLTLTKSDWNKHKVYTCEVTHEG 89 (100)
T ss_pred -------EEEEEcHHHhCCCCeEEEEEEecC
Confidence 345555555556778888887765
No 289
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=98.57 E-value=1.1e-06 Score=56.86 Aligned_cols=70 Identities=23% Similarity=0.344 Sum_probs=45.6
Q ss_pred eeecCCcEEEEEEecC-CCCCeeEEEECCee-----c------C-CCeeE------eceEE--eeccceEEEEEEeecCC
Q psy14540 13 TLQPGPPVSLKCIATG-NPTPHISWKLDGYP-----L------A-GDRFV------MGQYM--SLHGDVISHVNISSVRV 71 (291)
Q Consensus 13 ~v~~g~~v~l~C~~~~-~~~~~v~W~~~~~~-----~------~-~~~~~------~~~~~--~~~~~~~~~l~i~~~~~ 71 (291)
.+.+|++++|.|.+.. .....+.||+.... + . ..... ...+. .......+.|+|.+++.
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~ 81 (107)
T cd07700 2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKP 81 (107)
T ss_pred EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCH
Confidence 5789999999999865 33457999983221 0 0 00000 01111 12234457899999999
Q ss_pred CCCeEEEEEEe
Q psy14540 72 EDSGIYQCTAT 82 (291)
Q Consensus 72 ~d~G~y~C~~~ 82 (291)
+|+|.|.|...
T Consensus 82 ~Dsg~YyCa~~ 92 (107)
T cd07700 82 EDSGTYFCMTV 92 (107)
T ss_pred HHCEEEEEeEc
Confidence 99999999975
No 290
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=98.55 E-value=9.4e-07 Score=61.05 Aligned_cols=98 Identities=19% Similarity=0.236 Sum_probs=61.9
Q ss_pred ceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCce
Q psy14540 115 SIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSS 194 (291)
Q Consensus 115 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~ 194 (291)
.+.+.+|++++|.|....+...+.++|+|....+. ..... + +.+ . .+. ...+
T Consensus 24 ~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~Ia-----tY~~~---g-------------~~i----~--~~F-k~Rv 75 (189)
T PHA02987 24 KITVSEHVNVKISCNKTSSFNSILITWKKNNKTIA-----GYGPC---G-------------PVI----V--DKF-KNKI 75 (189)
T ss_pred EEEEcCCCCEEEEEecCCCCccceEEEEEcCCCEE-----EEecC---C-------------cEE----C--hhh-cCeE
Confidence 46788999999999974455678899998643110 00000 0 000 0 000 0112
Q ss_pred E-EEEeccceEEEEeeeecCCCeeEEEEeeeCC-c-cCCceeEEEEecC
Q psy14540 195 N-LRVNEYTSSLSIATLSTGHSGNYTCVASNTV-A-SDNHSSNLRVNVP 240 (291)
Q Consensus 195 ~-~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~-~-~~~~~~~l~v~~~ 240 (291)
. +........|.|.+++.+|+|.|.|.+.-.. | ..+...-|.|..+
T Consensus 76 e~mS~s~~~StItIknVt~sDeGcY~C~F~tfp~G~~~~gt~CLtVt~~ 124 (189)
T PHA02987 76 EYLSKSFNESTILIKNVSLKDNGCYTCIFNTLLSKNNEKGVVCLNVTTD 124 (189)
T ss_pred EEeccCCCcceEEEEeCChhhCeEEEEEEEecCCCCCceeEEEEEEEch
Confidence 1 2233346789999999999999999887643 5 7778888888754
No 291
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=98.52 E-value=3.3e-06 Score=54.59 Aligned_cols=34 Identities=26% Similarity=0.599 Sum_probs=28.2
Q ss_pred eecCCCceEEEEEeeCCCCC-ceeEEeECCEeccC
Q psy14540 117 KVHSGDRAGVQCLVTKGDPP-LTISWLKNGLPILS 150 (291)
Q Consensus 117 ~~~~g~~~~l~C~~~~~~p~-~~~~W~~~~~~~~~ 150 (291)
....|+.++|.|.+.+.+|. ..++|++||..+..
T Consensus 17 ~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~ 51 (111)
T cd05772 17 RANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSA 51 (111)
T ss_pred ccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECcc
Confidence 34468889999999877885 69999999999854
No 292
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.52 E-value=1.1e-06 Score=57.86 Aligned_cols=32 Identities=22% Similarity=0.402 Sum_probs=25.5
Q ss_pred CcceeecCCCceEEEEEeeCC--CCCceeEEeECC
Q psy14540 113 SRSIKVHSGDRAGVQCLVTKG--DPPLTISWLKNG 145 (291)
Q Consensus 113 ~~~~~~~~g~~~~l~C~~~~~--~p~~~~~W~~~~ 145 (291)
+..+.+.+|+.++|.|.+ .+ .+.+.+.||+..
T Consensus 5 p~~~~~~~G~~v~l~C~~-~~~~~~~~~v~Wyrq~ 38 (116)
T cd04982 5 QLSITREESKSVTISCKV-SGIDFSTTYIHWYRQK 38 (116)
T ss_pred CCeEEeCCCCCEEEEEEE-eCCCccccEEEEEEEC
Confidence 345778899999999998 44 567889999853
No 293
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=98.52 E-value=4.7e-06 Score=52.09 Aligned_cols=79 Identities=20% Similarity=0.418 Sum_probs=47.6
Q ss_pred CCcceeecceeeeecCCcEEEEEEecC-CC-CCeeEEEECCeecCCCeeEeceEEeeccce---EEEEEEeecCCCCCeE
Q psy14540 2 HPQLIYKFIQQTLQPGPPVSLKCIATG-NP-TPHISWKLDGYPLAGDRFVMGQYMSLHGDV---ISHVNISSVRVEDSGI 76 (291)
Q Consensus 2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~-~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~G~ 76 (291)
||.+.+-+.. ....|+..+|.|.+.+ .| ...++|.+||..+..+..... .....+.. .+.|.+. ..+...
T Consensus 1 ~P~V~v~~~~-~~~~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~-~~~~~Dgty~~~s~L~v~---~~~~~~ 75 (94)
T cd05767 1 PPEVTVFSLK-PVELGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETR-YYPRQDLSFQKFSYLNFT---PEEGDI 75 (94)
T ss_pred CCEEEEEeCC-cccCCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEee-eEeCCCCcEEEEEEEEEE---CCCCCe
Confidence 5666544433 2445677899999998 44 567999999998764322211 11122222 2344443 345569
Q ss_pred EEEEEeCCC
Q psy14540 77 YQCTATNRV 85 (291)
Q Consensus 77 y~C~~~~~~ 85 (291)
|+|.+.+..
T Consensus 76 ytC~V~H~~ 84 (94)
T cd05767 76 YSCIVEHWG 84 (94)
T ss_pred EEEEEEeCC
Confidence 999998754
No 294
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=98.52 E-value=1.3e-06 Score=54.72 Aligned_cols=81 Identities=16% Similarity=0.251 Sum_probs=48.5
Q ss_pred eecceeeeecCCcEEEEEEecC-CC-CCeeEEEECCeecCCCeeEeceEEeecc--ceEEEEEEeecCCCCCeEEEEEEe
Q psy14540 7 YKFIQQTLQPGPPVSLKCIATG-NP-TPHISWKLDGYPLAGDRFVMGQYMSLHG--DVISHVNISSVRVEDSGIYQCTAT 82 (291)
Q Consensus 7 ~~~~~~~v~~g~~v~l~C~~~~-~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~ 82 (291)
..|.......++.++|.|.+.+ .| ...|+|+++|..+..............+ ...+.|.+......+...|+|.+.
T Consensus 4 ~~ps~~~~~~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~ 83 (94)
T cd05847 4 LHSSCCDTGTSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVT 83 (94)
T ss_pred ECcChHHcCCCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEE
Confidence 3444444445677999999998 45 4779999999986422111111111111 123556565544556679999998
Q ss_pred CCCCc
Q psy14540 83 NRVGS 87 (291)
Q Consensus 83 ~~~~~ 87 (291)
+....
T Consensus 84 H~~~~ 88 (94)
T cd05847 84 HQGTT 88 (94)
T ss_pred ECCee
Confidence 76543
No 295
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=98.51 E-value=3.2e-06 Score=53.13 Aligned_cols=81 Identities=21% Similarity=0.284 Sum_probs=47.1
Q ss_pred CCcceeecceeeeecCCcEEEEEEecC-CCC-CeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEE
Q psy14540 2 HPQLIYKFIQQTLQPGPPVSLKCIATG-NPT-PHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQC 79 (291)
Q Consensus 2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~-~~~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C 79 (291)
||.+.+.+.... |+.++|.|.+.+ .|. ..++|+++++.+...... .......+..........+...+.+.|+|
T Consensus 2 pP~v~v~~~~~~---~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~-~~~~~~~d~ty~~~s~l~v~~~~~~~ytC 77 (93)
T cd07698 2 PPEVRVTRKRAP---DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVES-GEILPNGDGTYQLWVTLEVPPEDKARYSC 77 (93)
T ss_pred CCEEEEEecCCC---CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccc-cceEECCCCeEEEEEEEEECCCCCCEEEE
Confidence 677666554432 788999999998 454 489999999643322111 11111222222222222344457789999
Q ss_pred EEeCCCC
Q psy14540 80 TATNRVG 86 (291)
Q Consensus 80 ~~~~~~~ 86 (291)
.+.+...
T Consensus 78 ~V~H~~~ 84 (93)
T cd07698 78 RVEHSGL 84 (93)
T ss_pred EEEeCCC
Confidence 9986543
No 296
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=98.51 E-value=6.6e-07 Score=57.54 Aligned_cols=70 Identities=17% Similarity=0.350 Sum_probs=46.3
Q ss_pred eeecCCcEEEEEEecCCCCCeeEEEECC----eec---C---C-CeeE-------eceEEeeccceEEEEEEeecCCCCC
Q psy14540 13 TLQPGPPVSLKCIATGNPTPHISWKLDG----YPL---A---G-DRFV-------MGQYMSLHGDVISHVNISSVRVEDS 74 (291)
Q Consensus 13 ~v~~g~~v~l~C~~~~~~~~~v~W~~~~----~~~---~---~-~~~~-------~~~~~~~~~~~~~~l~i~~~~~~d~ 74 (291)
.+.+|++|+|.|.........+.|++.. ... . . .... ..++........+.|+|.+++.+|+
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~sDs 81 (104)
T cd05720 2 DAELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKENE 81 (104)
T ss_pred cccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHHHC
Confidence 4789999999999865445679999833 211 0 1 0000 1112112223567899999999999
Q ss_pred eEEEEEEe
Q psy14540 75 GIYQCTAT 82 (291)
Q Consensus 75 G~y~C~~~ 82 (291)
|.|.|.+.
T Consensus 82 gtY~Ca~~ 89 (104)
T cd05720 82 GYYFCSVA 89 (104)
T ss_pred EEEEEEEc
Confidence 99999875
No 297
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=98.50 E-value=8.6e-06 Score=53.38 Aligned_cols=94 Identities=19% Similarity=0.317 Sum_probs=50.7
Q ss_pred cceeecCCCceEEEEEeeCCCC---CceeEEeECCEeccCCCceEEeccCCceEEEEEe-eCCCCCceeEEEEEEecCCC
Q psy14540 114 RSIKVHSGDRAGVQCLVTKGDP---PLTISWLKNGLPILSDAEITIRSSGEYTSSLSIA-TLSTGHSGNYTCVASNTVAS 189 (291)
Q Consensus 114 ~~~~~~~g~~~~l~C~~~~~~p---~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~-~~~~~d~g~y~C~~~~~~~~ 189 (291)
..+.+.+|++++|.|.+....+ ...+.|++.... .... ...+... .......+.|.-++....
T Consensus 6 ~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~--~~~~---------~~v~~~~~~~~~~~~~~f~~R~~~~~-- 72 (115)
T cd05880 6 KEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLD--GGRE---------ESVFYYHKRPYPPPDGRFKGRVVWDG-- 72 (115)
T ss_pred ceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCC--CCce---------eEEEEECCCccccCcccccCeEEEec--
Confidence 4477889999999999843322 246999862110 0000 0001100 000111222322221100
Q ss_pred CCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCc
Q psy14540 190 DNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVA 227 (291)
Q Consensus 190 ~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~ 227 (291)
.......+|.|.+++.+|+|.|.|.+.|...
T Consensus 73 -------~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~ 103 (115)
T cd05880 73 -------NIMRRDASILIWQLQPTDNGTYTCQVKNPPD 103 (115)
T ss_pred -------CCcCCceEEEEeeCChhhCEEEEEEEEeCCC
Confidence 0123356799999999999999999998664
No 298
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=98.49 E-value=1.9e-06 Score=54.47 Aligned_cols=37 Identities=22% Similarity=0.381 Sum_probs=32.0
Q ss_pred cceEEEEeeeecCCCeeEEEEeee-CCccCCceeEEEE
Q psy14540 201 YTSSLSIATLSTGHSGNYTCVASN-TVASDNHSSNLRV 237 (291)
Q Consensus 201 ~~~~l~i~~~~~~~~g~y~C~~~~-~~~~~~~~~~l~v 237 (291)
.+.+|.|.+++.+|+|.|+|.+.+ +.|..+..+.|.|
T Consensus 61 ~daSi~i~nl~~~D~G~Y~C~v~t~P~g~~~~~~~L~V 98 (99)
T cd05886 61 EDGTISLSRLELEDEGVYICEFATFPTGNRESQLNLTV 98 (99)
T ss_pred CcceEEEcCCccccCEEEEEEEEeCCCCCeEEEEEEEE
Confidence 468899999999999999999999 5677777777776
No 299
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=98.49 E-value=2.6e-06 Score=55.10 Aligned_cols=74 Identities=22% Similarity=0.367 Sum_probs=45.4
Q ss_pred eeeecCCcEEEEEEecC-CC-CCeeEEEECCeecCCCeeEeceEEee-ccceEEEEEEeecCCCCCe-EEEEEEeCCCC
Q psy14540 12 QTLQPGPPVSLKCIATG-NP-TPHISWKLDGYPLAGDRFVMGQYMSL-HGDVISHVNISSVRVEDSG-IYQCTATNRVG 86 (291)
Q Consensus 12 ~~v~~g~~v~l~C~~~~-~~-~~~v~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~i~~~~~~d~G-~y~C~~~~~~~ 86 (291)
..+..|+.++|.|.+.+ .| ...++|++||+.+............. .....+.|.+.. ...|.| .|+|.+.+...
T Consensus 16 ~~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~~~~p~~d~~ty~~~S~L~~~~-~~~d~~~~ytC~V~H~~l 93 (111)
T cd05772 16 GRANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQPNITPEGDSVSYNVTSTVQVKL-TEDDVHSQVTCEVQHRTL 93 (111)
T ss_pred hccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECcccccceeeCCCCCcEEEEEEEEEEC-ccccccCceEEEEEeCCC
Confidence 34567889999999998 55 46899999999886322111110000 111235566654 344444 69999987653
No 300
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=98.48 E-value=6.9e-07 Score=56.22 Aligned_cols=24 Identities=38% Similarity=0.407 Sum_probs=21.0
Q ss_pred eEEEEeeeecCCCeeEEEEeeeCC
Q psy14540 203 SSLSIATLSTGHSGNYTCVASNTV 226 (291)
Q Consensus 203 ~~l~i~~~~~~~~g~y~C~~~~~~ 226 (291)
.+|.|.+++.+|+|.|.|.+....
T Consensus 57 ~sL~I~~l~~~DsG~Y~c~v~~~~ 80 (92)
T cd05741 57 GSLLIQNLTKEDSGTYTLQIISTN 80 (92)
T ss_pred ceEEEccCCchhcEEEEEEEEcCC
Confidence 679999999999999999988765
No 301
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=98.47 E-value=2.5e-06 Score=51.23 Aligned_cols=26 Identities=42% Similarity=0.884 Sum_probs=21.5
Q ss_pred eEEEEEeeCCCCC-ceeEEeECCEecc
Q psy14540 124 AGVQCLVTKGDPP-LTISWLKNGLPIL 149 (291)
Q Consensus 124 ~~l~C~~~~~~p~-~~~~W~~~~~~~~ 149 (291)
++|.|.+.+.+|. ..++|+++|+++.
T Consensus 2 ~~L~C~a~gf~P~~i~v~W~k~g~~~~ 28 (75)
T smart00407 2 ATLVCLVSGFYPPDITVTWLRNGQEVT 28 (75)
T ss_pred eEEEEEEEeEeCCCCEEEEEECCEECC
Confidence 6899999777776 6999999998753
No 302
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=98.47 E-value=2.7e-07 Score=55.57 Aligned_cols=58 Identities=34% Similarity=0.698 Sum_probs=31.0
Q ss_pred eEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEe
Q psy14540 124 AGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASN 185 (291)
Q Consensus 124 ~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~ 185 (291)
++|.|.+..+.+.+.+.|+ +...... ............|.+..+..+|.|.|+|.|.|
T Consensus 18 ~~l~C~~~~~~~~~~~~W~-~~~~~~~---~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N 75 (75)
T PF13927_consen 18 VTLTCSAEGGPPPPSISWY-DSNPSFN---SNSRGSSSSNSTLTISNVTRSDNGTYTCIASN 75 (75)
T ss_dssp EEEEEEESSEESSEEEEEE-TEEEEEE---EEEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred EEEEEEEccccCCeEEEEE-ecCCcee---eeeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence 9999999544448899999 1111000 00011111234556666666666666666554
No 303
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=98.46 E-value=1.3e-06 Score=57.44 Aligned_cols=77 Identities=22% Similarity=0.422 Sum_probs=49.2
Q ss_pred eecceeeeecCCcEEEEEEecCCC--CCeeEEEEC--CeecC--------CCee-----EeceEEee--ccceEEEEEEe
Q psy14540 7 YKFIQQTLQPGPPVSLKCIATGNP--TPHISWKLD--GYPLA--------GDRF-----VMGQYMSL--HGDVISHVNIS 67 (291)
Q Consensus 7 ~~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~--~~~~~--------~~~~-----~~~~~~~~--~~~~~~~l~i~ 67 (291)
..|....+.+|++++|.|...... ...+.||+. |+... .... ...++... .....+.|.|.
T Consensus 2 ~~~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~ 81 (117)
T cd04981 2 VESGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLN 81 (117)
T ss_pred ccCCCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEEC
Confidence 356677899999999999876422 456999982 22110 0000 01111111 11234679999
Q ss_pred ecCCCCCeEEEEEEeC
Q psy14540 68 SVRVEDSGIYQCTATN 83 (291)
Q Consensus 68 ~~~~~d~G~y~C~~~~ 83 (291)
+++.+|+|.|.|.+..
T Consensus 82 ~~~~~Dsa~YyCa~~~ 97 (117)
T cd04981 82 SLTPEDTAVYYCARGL 97 (117)
T ss_pred CCCHHHCEEEEEEEEc
Confidence 9999999999998763
No 304
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=98.46 E-value=2e-06 Score=54.77 Aligned_cols=36 Identities=25% Similarity=0.475 Sum_probs=29.8
Q ss_pred ceEEEEeeeecCCCeeEEEEeee-CCccCCceeEEEE
Q psy14540 202 TSSLSIATLSTGHSGNYTCVASN-TVASDNHSSNLRV 237 (291)
Q Consensus 202 ~~~l~i~~~~~~~~g~y~C~~~~-~~~~~~~~~~l~v 237 (291)
..+|.|.+++.+|+|.|.|.+.. +.|.....+.|.|
T Consensus 61 ~~sL~I~~v~~~D~G~Y~C~v~~~~~g~~~~~~~l~V 97 (98)
T cd05718 61 DATISISNLRLEDEGNYICEFATFPQGNRQKVTTLTV 97 (98)
T ss_pred ceEEEEccCCcccCEEEEEEEEeCCCCcEEEEEEEEe
Confidence 56799999999999999999875 5577888887776
No 305
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=98.46 E-value=1.2e-06 Score=55.98 Aligned_cols=36 Identities=22% Similarity=0.403 Sum_probs=30.0
Q ss_pred ceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEE
Q psy14540 202 TSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRV 237 (291)
Q Consensus 202 ~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v 237 (291)
..+|.|.+++.+|+|.|.|.+.+..+.....+.|.|
T Consensus 64 ~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~i~l~v 99 (100)
T cd05713 64 SVALRIHNVRASDEGLYTCFFQSDGFYEEATVELKV 99 (100)
T ss_pred cEEEEEEcCChhhCEEEEEEEecCCcEEEEEEEEEE
Confidence 457888999999999999999887777788888876
No 306
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=98.46 E-value=8.9e-06 Score=53.53 Aligned_cols=26 Identities=31% Similarity=0.501 Sum_probs=22.6
Q ss_pred ceEEEEeeeecCCCeeEEEEeeeCCc
Q psy14540 202 TSSLSIATLSTGHSGNYTCVASNTVA 227 (291)
Q Consensus 202 ~~~l~i~~~~~~~~g~y~C~~~~~~~ 227 (291)
..+|.|.+++.+|+|.|.|.+.+...
T Consensus 79 ~~sL~I~~v~~~D~G~Y~C~v~~~~~ 104 (116)
T cd05715 79 DASIVIHNLQFTDNGTYTCDVKNPPD 104 (116)
T ss_pred eeEEEEeeCCcccCEEEEEEEEeCCC
Confidence 56799999999999999999997653
No 307
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=98.46 E-value=2.4e-06 Score=53.47 Aligned_cols=37 Identities=16% Similarity=0.385 Sum_probs=31.0
Q ss_pred cceEEEEeeeecCCCeeEEEEeee-CCccCCceeEEEE
Q psy14540 201 YTSSLSIATLSTGHSGNYTCVASN-TVASDNHSSNLRV 237 (291)
Q Consensus 201 ~~~~l~i~~~~~~~~g~y~C~~~~-~~~~~~~~~~l~v 237 (291)
.+.+|.|.+++.+|+|.|+|.+.. +.|....+..|.|
T Consensus 58 ~d~sl~i~nv~~~D~G~Y~C~v~tfP~G~~~~~~~l~~ 95 (96)
T cd05887 58 LDATIMLENVGFSDIGVYICKAVTFPLGNTQSSTTVTV 95 (96)
T ss_pred CccEEEEeCCCccccEEEEEEEEeCCCCCeeEEEEEEE
Confidence 367899999999999999999876 4488888887776
No 308
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=98.45 E-value=8.9e-06 Score=51.02 Aligned_cols=73 Identities=12% Similarity=0.148 Sum_probs=43.6
Q ss_pred eecCCcEEEEEEecC-CC-CCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCc
Q psy14540 14 LQPGPPVSLKCIATG-NP-TPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGS 87 (291)
Q Consensus 14 v~~g~~v~l~C~~~~-~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~ 87 (291)
+..|+.++|.|.+.+ .| ...++|+++|..+....... ......+........-.+...+...|+|.+.+....
T Consensus 11 ~~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~-~~~~~~dgTy~~~s~L~~~~~~~~~ysC~V~H~~l~ 85 (94)
T cd05766 11 GSLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVST-ELIPNGDWTYQILVMLETTPSRGDTYTCVVEHSSLQ 85 (94)
T ss_pred ccCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceec-ceEECCCCcEEEEEEEEEcCCCCCEEEEEEEeCCCC
Confidence 457899999999998 44 45799999999876431111 111111112221122233445566999999876543
No 309
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=98.45 E-value=2.3e-06 Score=54.35 Aligned_cols=37 Identities=22% Similarity=0.364 Sum_probs=29.7
Q ss_pred cceEEEEeeeecCCCeeEEEEeeeC-CccCCceeEEEE
Q psy14540 201 YTSSLSIATLSTGHSGNYTCVASNT-VASDNHSSNLRV 237 (291)
Q Consensus 201 ~~~~l~i~~~~~~~~g~y~C~~~~~-~~~~~~~~~l~v 237 (291)
...+|.|.+++.+|+|.|.|.+... .|..+..+.|.|
T Consensus 59 ~~~sL~I~nv~~~D~G~Y~C~~~~~p~g~~~~~~~L~v 96 (97)
T cd05846 59 NSTSITIWNVTLEDEGCYKCIFNTFPDGSKSGTMCLTV 96 (97)
T ss_pred CccEEEEeCCceeeeEEEEEEEEeCCCCCeeeEEEEEE
Confidence 3578999999999999999998754 477777777766
No 310
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=98.44 E-value=4.9e-06 Score=49.93 Aligned_cols=67 Identities=18% Similarity=0.330 Sum_probs=42.1
Q ss_pred cEEEEEEecC-CCC-CeeEEEECCeecCCCeeEeceEEeec--cceEEEEEEeecCCCCCeEEEEEEeCCC
Q psy14540 19 PVSLKCIATG-NPT-PHISWKLDGYPLAGDRFVMGQYMSLH--GDVISHVNISSVRVEDSGIYQCTATNRV 85 (291)
Q Consensus 19 ~v~l~C~~~~-~~~-~~v~W~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~i~~~~~~d~G~y~C~~~~~~ 85 (291)
.++|.|.+.+ .|. ..+.|+++|+.+..+........... ....+.|.|......+...|+|.+.+..
T Consensus 1 ~~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~~ 71 (75)
T smart00407 1 KATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHEG 71 (75)
T ss_pred CeEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEcC
Confidence 3689999998 454 68999999987543322211111111 1133556666666667789999998654
No 311
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=98.43 E-value=2.6e-06 Score=54.44 Aligned_cols=34 Identities=24% Similarity=0.304 Sum_probs=24.5
Q ss_pred ceEEEEeeeecCCCeeEEEEeeeCC-ccCCceeEE
Q psy14540 202 TSSLSIATLSTGHSGNYTCVASNTV-ASDNHSSNL 235 (291)
Q Consensus 202 ~~~l~i~~~~~~~~g~y~C~~~~~~-~~~~~~~~l 235 (291)
+++|.|.+++..|+|.|+|.+.+.. ......+.|
T Consensus 69 ngSL~I~~v~~~D~G~Y~~~v~~~~~~~~~~~v~l 103 (105)
T cd05774 69 NGSLLIQNVTQKDTGFYTLQTITTNFQVEQATVHL 103 (105)
T ss_pred CCcEEEecCCcccCEEEEEEEEeCCccEEEEEEEE
Confidence 4678888888888999999888766 333444443
No 312
>PHA03269 envelope glycoprotein C; Provisional
Probab=98.43 E-value=3.7e-05 Score=60.86 Aligned_cols=81 Identities=21% Similarity=0.243 Sum_probs=57.3
Q ss_pred EEEEEEeecCCCCCeEEEEEEeCC-CC--ceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCC-
Q psy14540 61 ISHVNISSVRVEDSGIYQCTATNR-VG--SQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPP- 136 (291)
Q Consensus 61 ~~~l~i~~~~~~d~G~y~C~~~~~-~~--~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~- 136 (291)
...|.|.+++..++|.|.=.+.+. .+ .....+.+.+...|... -....+.+|+...-.|.+.+.+|.
T Consensus 288 ~~pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~yr~PsVs---------V~p~PVL~Ge~YkAtC~vA~YYPp~ 358 (566)
T PHA03269 288 DFSLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSYKRPNIT---------VIGDPVLLGNPYAAYCKVNKYYPPH 358 (566)
T ss_pred ccceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEecCCCcc---------ccCCccccCCCceEEEEeeeecCCC
Confidence 367999999999999998665422 22 23455566666555211 112356789999999999777774
Q ss_pred -ceeEEeECCEeccC
Q psy14540 137 -LTISWLKNGLPILS 150 (291)
Q Consensus 137 -~~~~W~~~~~~~~~ 150 (291)
..+.||+|+.++..
T Consensus 359 SvrlrWf~ng~~V~~ 373 (566)
T PHA03269 359 SVIVKWTSNFGNIGK 373 (566)
T ss_pred ceEEEEEeCCcccCc
Confidence 47999999988864
No 313
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=98.43 E-value=7.3e-07 Score=55.69 Aligned_cols=82 Identities=27% Similarity=0.460 Sum_probs=49.0
Q ss_pred CcceeecceeeeecCCcEEEEEEecC-CCCCeeEEEECCeecCCCeeEeceEEeeccc---eEEEEEEeecCCCCCeEEE
Q psy14540 3 PQLIYKFIQQTLQPGPPVSLKCIATG-NPTPHISWKLDGYPLAGDRFVMGQYMSLHGD---VISHVNISSVRVEDSGIYQ 78 (291)
Q Consensus 3 p~~~~~~~~~~v~~g~~v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~G~y~ 78 (291)
|.|.......... |+.+.|.|.+.+ +|.+.|+|+.++..+.... .......... ..+.|.+......+...++
T Consensus 1 p~I~~~~~~~~~~-~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~--~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~ 77 (89)
T PF08205_consen 1 PEITPNPSLLEGE-GEEVTLTCSSSGGYPPPQITWYLDGGPVVASN--TTQSSSPDNGLFTVSSTLTLTPTREDHGKTLT 77 (89)
T ss_dssp EEEEEECSEEESS-TEEEEEEEEEEEEBS-EEEEEEETTCEECEEE--EEEEEETTTTTEEEEEEEEEETTGGGTTEEEE
T ss_pred CEeeCCCeeEccc-ceEEEEEEEeCCeECCeEEEEEECCCceeeee--eeeeeccCCCcceEEEEEEEEcChHHCCeEEE
Confidence 4455544333332 789999998776 8999999999987762111 1111111111 2356776654444566999
Q ss_pred EEEeCCCCc
Q psy14540 79 CTATNRVGS 87 (291)
Q Consensus 79 C~~~~~~~~ 87 (291)
|.+.+....
T Consensus 78 C~~~~~~~~ 86 (89)
T PF08205_consen 78 CRASHPALS 86 (89)
T ss_dssp EEEEETTCC
T ss_pred EEEECCccC
Confidence 999876543
No 314
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=98.42 E-value=3.8e-06 Score=54.18 Aligned_cols=38 Identities=26% Similarity=0.505 Sum_probs=31.8
Q ss_pred cceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEe
Q psy14540 201 YTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVN 238 (291)
Q Consensus 201 ~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~ 238 (291)
...+|.|.+++.+|+|.|.|.+..........+.|.|.
T Consensus 70 ~~asL~i~nv~~~D~G~Y~C~v~~g~~~~~~~v~L~V~ 107 (110)
T cd05902 70 YNASLVLSRLRYSDSGTYRCEVVLGINDEQDTVPLEVT 107 (110)
T ss_pred ceEEEEECCCCHHHCEEEEEEEEECCcccEEEEEEEEE
Confidence 36789999999999999999999877667777777764
No 315
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.42 E-value=2.7e-06 Score=55.04 Aligned_cols=32 Identities=16% Similarity=0.454 Sum_probs=24.8
Q ss_pred CcceeecCCCceEEEEEeeCCCC-CceeEEeECC
Q psy14540 113 SRSIKVHSGDRAGVQCLVTKGDP-PLTISWLKNG 145 (291)
Q Consensus 113 ~~~~~~~~g~~~~l~C~~~~~~p-~~~~~W~~~~ 145 (291)
+....+.+|++++|.|.+ .+.. ...+.||+..
T Consensus 7 p~~~~v~~G~~v~L~C~~-~~~~~~~~~~Wyrq~ 39 (106)
T cd04980 7 PATLSVSPGESATISCKA-SQSVSSNYLAWYQQK 39 (106)
T ss_pred CCcEEECCCCCEEEEEEE-CCCCCCCcEEEEEEC
Confidence 345788999999999998 4444 5689999843
No 316
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=98.42 E-value=6.7e-06 Score=53.20 Aligned_cols=38 Identities=24% Similarity=0.438 Sum_probs=32.9
Q ss_pred cceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEe
Q psy14540 201 YTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVN 238 (291)
Q Consensus 201 ~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~ 238 (291)
.+.+|.|.+++..|+|.|.|++.+........+.|.|.
T Consensus 77 g~asL~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~ 114 (117)
T cd05901 77 GDASLTIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVS 114 (117)
T ss_pred CceEEEEcccccccCEEEEEEEEECCcccEEEEEEEEE
Confidence 46789999999999999999999888778888888775
No 317
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.41 E-value=3.9e-06 Score=49.63 Aligned_cols=66 Identities=36% Similarity=0.640 Sum_probs=46.4
Q ss_pred EEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCC
Q psy14540 20 VSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRV 85 (291)
Q Consensus 20 v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~ 85 (291)
+.|.|.+.+.+...+.|++++.....................+.|.|.+++..|.|.|.|.+.+..
T Consensus 1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 66 (74)
T cd00096 1 VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA 66 (74)
T ss_pred CEEEEEecCCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence 468999988677889999988766532211111111223455779999999999999999997654
No 318
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=98.38 E-value=2.4e-06 Score=53.74 Aligned_cols=31 Identities=26% Similarity=0.197 Sum_probs=24.5
Q ss_pred ceeecCCCceEEEEEeeCCCCCceeEEeECCEe
Q psy14540 115 SIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLP 147 (291)
Q Consensus 115 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~ 147 (291)
...+.+|++|+|.|... . ....+.|+|+|..
T Consensus 9 ~~vV~~G~~VTL~C~~~-~-~~~~f~l~k~g~~ 39 (94)
T cd05711 9 SPVVPSGENVTLQCHSD-I-RFDRFILYKEGRS 39 (94)
T ss_pred CCccCCCCeEEEEEecC-C-CCCEEEEEECCCC
Confidence 35677999999999873 3 5568999998865
No 319
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=98.36 E-value=3.8e-06 Score=54.50 Aligned_cols=88 Identities=19% Similarity=0.329 Sum_probs=53.7
Q ss_pred CCccee-ecceeeeecCCcEEEEEEecC-CCC-CeeEEEECCeecCCCeeEeceEEeec---cceEEEEEEeecCCCC-C
Q psy14540 2 HPQLIY-KFIQQTLQPGPPVSLKCIATG-NPT-PHISWKLDGYPLAGDRFVMGQYMSLH---GDVISHVNISSVRVED-S 74 (291)
Q Consensus 2 ~p~~~~-~~~~~~v~~g~~v~l~C~~~~-~~~-~~v~W~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~i~~~~~~d-~ 74 (291)
+|.+.+ .|....+.+++.++|.|.+.+ .|. ..|.|++|+..+..+........... ....+.|.|...+..+ .
T Consensus 2 ~P~V~v~~ps~~e~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~ 81 (115)
T cd05769 2 PPTVAIFPPSEAEIRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPR 81 (115)
T ss_pred CCEEEEECcChHHhccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCC
Confidence 675544 344445557788999999998 454 58999999988764321111111111 1233566666655544 4
Q ss_pred eEEEEEEeCCCCcee
Q psy14540 75 GIYQCTATNRVGSQT 89 (291)
Q Consensus 75 G~y~C~~~~~~~~~~ 89 (291)
..|+|.+.+......
T Consensus 82 ~~ytC~V~H~g~~~~ 96 (115)
T cd05769 82 NTFTCIVQFYGGTDT 96 (115)
T ss_pred CeEEEEEEEeCCccc
Confidence 589999987654433
No 320
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.35 E-value=4e-06 Score=53.38 Aligned_cols=28 Identities=14% Similarity=0.425 Sum_probs=21.6
Q ss_pred eecCCCceEEEEEeeCCC--CCceeEEeECC
Q psy14540 117 KVHSGDRAGVQCLVTKGD--PPLTISWLKNG 145 (291)
Q Consensus 117 ~~~~g~~~~l~C~~~~~~--p~~~~~W~~~~ 145 (291)
.+.+|++++|.|.. ... ....+.||+..
T Consensus 2 ~v~~G~~v~l~C~~-~~~~~~~~~i~Wy~q~ 31 (98)
T cd04984 2 SVSPGETVTITCTG-SSGNISGNYVNWYQQK 31 (98)
T ss_pred ccCCCCCEEEEEEE-cCCCcCCCCEEEEEEC
Confidence 46789999999998 343 45679999843
No 321
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=98.35 E-value=2.8e-06 Score=54.14 Aligned_cols=80 Identities=18% Similarity=0.357 Sum_probs=47.8
Q ss_pred eecceeeeecCCcEEEEEEecC-CC-CCeeEEEECCeecCCCeeEeceEEee-----ccceEEEEEEeecCCCCCeEEEE
Q psy14540 7 YKFIQQTLQPGPPVSLKCIATG-NP-TPHISWKLDGYPLAGDRFVMGQYMSL-----HGDVISHVNISSVRVEDSGIYQC 79 (291)
Q Consensus 7 ~~~~~~~v~~g~~v~l~C~~~~-~~-~~~v~W~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~i~~~~~~d~G~y~C 79 (291)
..|....+..|+.++|.|.+.+ .| ...++|+++|+.+............. .....+.|.|..-.+.+...|+|
T Consensus 6 ~~p~~~~~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC 85 (102)
T cd05768 6 LPPPSEELSLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTC 85 (102)
T ss_pred eCcChHHhCcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEE
Confidence 3444444566889999999998 44 45689999999876322111111111 11123456664444445568999
Q ss_pred EEeCCCC
Q psy14540 80 TATNRVG 86 (291)
Q Consensus 80 ~~~~~~~ 86 (291)
.+.+...
T Consensus 86 ~V~H~~l 92 (102)
T cd05768 86 VVGHEAL 92 (102)
T ss_pred EeEeCCC
Confidence 9987543
No 322
>PHA03270 envelope glycoprotein C; Provisional
Probab=98.34 E-value=5.9e-05 Score=58.90 Aligned_cols=79 Identities=16% Similarity=0.358 Sum_probs=57.2
Q ss_pred EEEEeecCCCCCeEEEEEEeCCCCc--eeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCC--ce
Q psy14540 63 HVNISSVRVEDSGIYQCTATNRVGS--QTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPP--LT 138 (291)
Q Consensus 63 ~l~i~~~~~~d~G~y~C~~~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~--~~ 138 (291)
.|.|..++...+|.|+=.+.+..+. ..+.+.+.....|... -....+.+|+...-.|.+.+.+|. ..
T Consensus 183 ~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~yr~Psvs---------v~~~PvL~Ge~Y~AtC~va~YYPp~Sv~ 253 (466)
T PHA03270 183 RLVIQELTLATQGMYYWARGPADRPHRYGTWTRVRMFRRPSLS---------IRPHAVLEGEPFGATCVAANYYPGDRAA 253 (466)
T ss_pred eEEEEEcccccceEEEEEEecCCCceeeeeEEEEEEecCCccc---------ccCCccccCCCceEEEEeeeecCCCceE
Confidence 4999999999999999987765543 3344555555544211 112356789999999999777774 47
Q ss_pred eEEeECCEeccC
Q psy14540 139 ISWLKNGLPILS 150 (291)
Q Consensus 139 ~~W~~~~~~~~~ 150 (291)
+.||.|+.++..
T Consensus 254 lrWf~ng~~V~~ 265 (466)
T PHA03270 254 FRWFEGGDEVFA 265 (466)
T ss_pred EEEEeCCccccC
Confidence 999999998854
No 323
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=98.33 E-value=3.5e-06 Score=53.40 Aligned_cols=93 Identities=14% Similarity=0.192 Sum_probs=51.7
Q ss_pred CCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEe
Q psy14540 120 SGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVN 199 (291)
Q Consensus 120 ~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~ 199 (291)
.|++|+|.|..........+.|++....+..... .. +.......+. . ..-.+.+.
T Consensus 3 ~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~------------------~~---~~~~~~~~~~--~--f~~R~~~~ 57 (97)
T cd05775 3 LGGSVTLPLNIPDGTEIESITWSFNTSLAIITPG------------------EE---TAPEIIVTDP--S--YKERVNFS 57 (97)
T ss_pred cCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecC------------------CC---CCCccEEeCC--C--ceeeEEec
Confidence 6999999998743255668999997432211100 00 0000000000 0 00012223
Q ss_pred ccceEEEEeeeecCCCeeEEEEeeeCCcc-CCceeEEEE
Q psy14540 200 EYTSSLSIATLSTGHSGNYTCVASNTVAS-DNHSSNLRV 237 (291)
Q Consensus 200 ~~~~~l~i~~~~~~~~g~y~C~~~~~~~~-~~~~~~l~v 237 (291)
....+|.|.+++.+|+|.|.|.+....+. ....+.|.|
T Consensus 58 ~~~~sL~I~~~~~~DsG~Y~c~v~~~~~~~~~~~f~L~v 96 (97)
T cd05775 58 QNDYSLQISNLKMEDAGSYRAEINTKNGVTITKEFTLHI 96 (97)
T ss_pred CCceeEEECCCchHHCEEEEEEEEcCCCCeEEEEEEEEe
Confidence 33578999999999999999998877643 345555555
No 324
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=98.29 E-value=5.5e-06 Score=52.77 Aligned_cols=30 Identities=17% Similarity=0.330 Sum_probs=23.1
Q ss_pred eeecCCCceEEEEEeeCCCCCceeEEeECC
Q psy14540 116 IKVHSGDRAGVQCLVTKGDPPLTISWLKNG 145 (291)
Q Consensus 116 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~ 145 (291)
+.+.+|++++|.|..........+.|++..
T Consensus 2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~~ 31 (98)
T cd05716 2 VTGELGGSVTIPCPYPPKNRSYEKYWCKWG 31 (98)
T ss_pred EEEEeCCeEEEEeeCCCCCCCcEeEeECCC
Confidence 457789999999998433456789999854
No 325
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.29 E-value=6.6e-06 Score=54.20 Aligned_cols=31 Identities=19% Similarity=0.406 Sum_probs=24.4
Q ss_pred cceeecCCCceEEEEEeeCCCCCceeEEeEC
Q psy14540 114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKN 144 (291)
Q Consensus 114 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~ 144 (291)
..+.+.+|++++|.|..........+.|++.
T Consensus 7 ~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq 37 (116)
T cd07706 7 PDVSVQVGEEVTLNCRYETSWTNYYIFWYKQ 37 (116)
T ss_pred CceEEcCCCCEEEEEEEeCCCCceEEEEEEE
Confidence 4577889999999999844345678999984
No 326
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.28 E-value=6.3e-06 Score=49.64 Aligned_cols=64 Identities=19% Similarity=0.312 Sum_probs=42.0
Q ss_pred eeecCCCceEEEEEeeCC-CCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEec
Q psy14540 116 IKVHSGDRAGVQCLVTKG-DPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNT 186 (291)
Q Consensus 116 ~~~~~g~~~~l~C~~~~~-~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~ 186 (291)
..+..|++++|+|....+ .|.+.++|+..+..... ....+...|.+..+...|+|.++|.+...
T Consensus 9 ~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~-------~~~~~~ktL~~~qv~~qdSG~WtC~V~~~ 73 (88)
T cd07694 9 DHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQ-------ILNQDKKTLNLVQLGPNDSGTWDCIVSVN 73 (88)
T ss_pred CeeecCCcEEEEEecCCCCCCCccEEEeCCCCccce-------eccCCccEEEeceeCcccCCEEEEEEEEC
Confidence 467799999999998433 34559999875433211 01122456777777777777777777654
No 327
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=98.25 E-value=1.8e-05 Score=50.44 Aligned_cols=37 Identities=16% Similarity=0.245 Sum_probs=29.5
Q ss_pred cceEEEEeeeecCCCeeEEEEeee-CCccCCceeEEEE
Q psy14540 201 YTSSLSIATLSTGHSGNYTCVASN-TVASDNHSSNLRV 237 (291)
Q Consensus 201 ~~~~l~i~~~~~~~~g~y~C~~~~-~~~~~~~~~~l~v 237 (291)
.+..|.|.+++.+|+|.|.|.+.+ +.|..+..+.|.|
T Consensus 62 ~~~sL~I~nv~~sD~GtY~C~v~~~p~g~~~~~~~L~V 99 (100)
T cd05888 62 ADGALILRNAVQADEGKYKCRVITFPAGNFEAELVLTV 99 (100)
T ss_pred CceEEEEecCccccceEEEEEEEeCCCCCeeeEEEEEe
Confidence 367799999999999999999987 4566666666655
No 328
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=98.24 E-value=2e-05 Score=49.51 Aligned_cols=79 Identities=13% Similarity=0.194 Sum_probs=45.7
Q ss_pred ceeecceeeeecCCcEEEEEEecC-CC-CCeeEEEECCeecCCCeeEeceEEe--eccceEEEEEEeecCCCCCeEEEEE
Q psy14540 5 LIYKFIQQTLQPGPPVSLKCIATG-NP-TPHISWKLDGYPLAGDRFVMGQYMS--LHGDVISHVNISSVRVEDSGIYQCT 80 (291)
Q Consensus 5 ~~~~~~~~~v~~g~~v~l~C~~~~-~~-~~~v~W~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~i~~~~~~d~G~y~C~ 80 (291)
+.+.+..... .++.++|.|.+.+ .| ...|+|+++|+. ..+......... ......+.|.+..........|+|+
T Consensus 5 ~~l~~~~~~~-~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~ 82 (95)
T cd04985 5 FPLVPCCSSS-SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCK 82 (95)
T ss_pred EEeCCCcccc-CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEE
Confidence 3444444333 5678999999998 33 567999999997 422111111111 1112235566655444345589999
Q ss_pred EeCCC
Q psy14540 81 ATNRV 85 (291)
Q Consensus 81 ~~~~~ 85 (291)
+.+..
T Consensus 83 V~H~~ 87 (95)
T cd04985 83 VEHPS 87 (95)
T ss_pred EEeCC
Confidence 98754
No 329
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=98.24 E-value=0.0012 Score=51.27 Aligned_cols=76 Identities=24% Similarity=0.314 Sum_probs=51.0
Q ss_pred ceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCCCCCCCCcccccCC-ceEEEEEEeecC-CCCceEEEEECCE
Q psy14540 202 TSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGPFTFGELMEG-VRTQVACVVQSG-DLPLSLQWYKNGL 279 (291)
Q Consensus 202 ~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~g-~~v~l~C~~~~~-~p~~~v~W~~~~~ 279 (291)
.++|+|+.+.-.++|-|+|+|...........-|.|.....+.= ..+| ..-.+.|-+-+. ..++.+.|.-+|.
T Consensus 345 ~STLTIkka~I~N~GCY~~~a~~g~~~~ec~~Cl~V~d~V~f~W-----~~e~~n~T~V~Cyv~sy~~kp~si~wkvnGV 419 (500)
T PHA02914 345 NSTLTIKKAHINNAGCYEAQAFMGKFKEECRHCFKVADHVFFKW-----NTEGDNETKVACYAAQYDMQPFSILWKSNGV 419 (500)
T ss_pred hceEEeeeEEEEcCCceEEEEecCcchhhhhhheEeccEEEEEE-----EeccCceEEEEEEEEecccCCceeEEEEccE
Confidence 79999999999999999999997765555554555433221110 2233 345688988334 3456899999887
Q ss_pred Ecc
Q psy14540 280 AIS 282 (291)
Q Consensus 280 ~l~ 282 (291)
...
T Consensus 420 ~~~ 422 (500)
T PHA02914 420 SFG 422 (500)
T ss_pred Eec
Confidence 653
No 330
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=98.23 E-value=9.8e-06 Score=50.75 Aligned_cols=30 Identities=20% Similarity=0.552 Sum_probs=24.4
Q ss_pred CCCceEEEEEeeCCCCC-ceeEEeECCEecc
Q psy14540 120 SGDRAGVQCLVTKGDPP-LTISWLKNGLPIL 149 (291)
Q Consensus 120 ~g~~~~l~C~~~~~~p~-~~~~W~~~~~~~~ 149 (291)
.++.++|.|.+.+.+|. ..++|+++|..+.
T Consensus 13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~ 43 (94)
T cd05847 13 TSETIQLLCLISGYTPGTIEVEWLVDGQVAT 43 (94)
T ss_pred CCCCEEEEEEEEeEECCCCEEEEEECCEECc
Confidence 45668999999776775 7899999998863
No 331
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=98.21 E-value=2.7e-05 Score=47.74 Aligned_cols=67 Identities=18% Similarity=0.333 Sum_probs=44.1
Q ss_pred cCCcEEEEEEecC-CC-CCeeEEEECCeecCCCeeEeceEEeeccce---EEEEEEeecCCCCCeEEEEEEeCCCC
Q psy14540 16 PGPPVSLKCIATG-NP-TPHISWKLDGYPLAGDRFVMGQYMSLHGDV---ISHVNISSVRVEDSGIYQCTATNRVG 86 (291)
Q Consensus 16 ~g~~v~l~C~~~~-~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~i~~~~~~d~G~y~C~~~~~~~ 86 (291)
.++.++|.|.+.+ .| ...|.|+++|..+........... ..+.. .+.|.+. ..+...|+|.+.+...
T Consensus 7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~-~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~l 78 (83)
T PF07654_consen 7 LGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPP-NSDGTYSVTSSLTVT---WNSGDEYSCRVTHESL 78 (83)
T ss_dssp STSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEE-ETTSEEEEEEEEEEE---TTTTGGEEEEEEETTS
T ss_pred CCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeeccccc-ccccceeeeEEEEec---CCCCCEEEEEEEECCC
Confidence 4899999999998 44 457999999998875433322221 22222 2444444 5566689999987654
No 332
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=98.21 E-value=2.3e-05 Score=49.13 Aligned_cols=75 Identities=8% Similarity=0.118 Sum_probs=43.5
Q ss_pred ecceeeeecCCcEEEEEEecC-CC-CCeeEEEECCeecCCCeeEeceEEeecc--ceEEEEEEeecCCCCCeEEEEEEeC
Q psy14540 8 KFIQQTLQPGPPVSLKCIATG-NP-TPHISWKLDGYPLAGDRFVMGQYMSLHG--DVISHVNISSVRVEDSGIYQCTATN 83 (291)
Q Consensus 8 ~~~~~~v~~g~~v~l~C~~~~-~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~~ 83 (291)
.|....+..+..++|.|.+.+ .| ...++|.+||..+..+.. ........+ ...+.|.+..-. ....|+|.+.+
T Consensus 7 ~ps~~e~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~-~~~~~~~~dty~~~S~L~vt~~~--~~~~ysC~V~H 83 (96)
T cd07697 7 SPSKKEIEKQGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQ-KSEKDKDNDVYSTTSWLTVTKDS--LGKKFRCIYKH 83 (96)
T ss_pred CCCHHHHccCCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeE-eccEecCCCEEEEEEEEEECchh--CCCeEEEEEEE
Confidence 344445556788999999998 44 567999999998764321 111111112 112334443321 23359999987
Q ss_pred CC
Q psy14540 84 RV 85 (291)
Q Consensus 84 ~~ 85 (291)
..
T Consensus 84 ~g 85 (96)
T cd07697 84 EG 85 (96)
T ss_pred CC
Confidence 43
No 333
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=98.20 E-value=3.7e-05 Score=48.26 Aligned_cols=33 Identities=27% Similarity=0.357 Sum_probs=26.9
Q ss_pred cCCCceEEEEEeeCCCCCc-eeEEeECCEeccCC
Q psy14540 119 HSGDRAGVQCLVTKGDPPL-TISWLKNGLPILSD 151 (291)
Q Consensus 119 ~~g~~~~l~C~~~~~~p~~-~~~W~~~~~~~~~~ 151 (291)
..|+..+|.|.+.+.+|.. .++|+++|..+...
T Consensus 12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~ 45 (94)
T cd05766 12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEG 45 (94)
T ss_pred cCCCCeEEEEEEeeecCCCCEEEEEECCeecCCC
Confidence 3578899999997778755 89999999987543
No 334
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=98.20 E-value=1.5e-05 Score=50.87 Aligned_cols=34 Identities=29% Similarity=0.659 Sum_probs=26.4
Q ss_pred eecCCCceEEEEEeeCCCCC-ceeEEeECCEeccC
Q psy14540 117 KVHSGDRAGVQCLVTKGDPP-LTISWLKNGLPILS 150 (291)
Q Consensus 117 ~~~~g~~~~l~C~~~~~~p~-~~~~W~~~~~~~~~ 150 (291)
.+..|+.++|.|.+.+.+|. ..++|+++|.++..
T Consensus 12 ~~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~ 46 (102)
T cd05768 12 ELSLQETATLTCLVKGFSPSDIFVKWLQNGQPLSK 46 (102)
T ss_pred HhCcCCceEEEEEEeeEeCCCCEEEEEECCEECCc
Confidence 34457889999999766774 47899999998754
No 335
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=98.20 E-value=1.5e-05 Score=49.98 Aligned_cols=35 Identities=20% Similarity=0.185 Sum_probs=27.4
Q ss_pred cceEEEEeeeecCCCeeEEEEeeeCC-ccCCceeEE
Q psy14540 201 YTSSLSIATLSTGHSGNYTCVASNTV-ASDNHSSNL 235 (291)
Q Consensus 201 ~~~~l~i~~~~~~~~g~y~C~~~~~~-~~~~~~~~l 235 (291)
.+.+|.|.+++.+|+|.|+|.+...- |...+.+.+
T Consensus 58 ~d~sI~i~nvt~~D~G~Y~C~~~t~P~g~~~~~i~~ 93 (96)
T cd05889 58 EDMSLSFNNATEEDVGLYCCSLVTYPQGSWEKVIEV 93 (96)
T ss_pred CccEEEEcCCCcccCEEEEEEEEeCCCCCeEEEEEE
Confidence 36789999999999999999997654 666555544
No 336
>PHA03271 envelope glycoprotein C; Provisional
Probab=98.19 E-value=0.00089 Score=52.31 Aligned_cols=81 Identities=25% Similarity=0.339 Sum_probs=55.2
Q ss_pred EEEEEeecCCCCCeEEEEEEeCCCCc--eeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCC--c
Q psy14540 62 SHVNISSVRVEDSGIYQCTATNRVGS--QTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPP--L 137 (291)
Q Consensus 62 ~~l~i~~~~~~d~G~y~C~~~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~--~ 137 (291)
..|.|.++...++|.|+-...+.... ..+.+.+.+...+.. .. -....+.+|+...-.|.+.+.+|+ .
T Consensus 207 m~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~~RPPs----Vs----V~a~PVL~Ge~YkAtC~vAnYYPP~Sv 278 (490)
T PHA03271 207 MGVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVCQRPAS----VD----VLAPPVLSGENYKASCIVRHFYPPGSV 278 (490)
T ss_pred eeEEEEEeecccceEEEEEecCCCCCccccceEEEEEEecCCC----cc----ccCCccccCCCceEEEEeeeecCCCce
Confidence 67899999999999876666543322 344455555544310 01 112346689999999999777775 4
Q ss_pred eeEEeECCEeccC
Q psy14540 138 TISWLKNGLPILS 150 (291)
Q Consensus 138 ~~~W~~~~~~~~~ 150 (291)
.++|++||.++..
T Consensus 279 rlrWf~nG~~V~~ 291 (490)
T PHA03271 279 YVSWRQNGNIATP 291 (490)
T ss_pred EEEEEeCCccccC
Confidence 7999999988744
No 337
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=98.19 E-value=3e-05 Score=48.78 Aligned_cols=31 Identities=19% Similarity=0.435 Sum_probs=24.1
Q ss_pred eeecCCCceEEEEEeeCC-CC-CceeEEeECCE
Q psy14540 116 IKVHSGDRAGVQCLVTKG-DP-PLTISWLKNGL 146 (291)
Q Consensus 116 ~~~~~g~~~~l~C~~~~~-~p-~~~~~W~~~~~ 146 (291)
..+..|+..+|.|.+.+. +| ...++|.++++
T Consensus 9 ~~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~ 41 (96)
T cd07696 9 KQLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSG 41 (96)
T ss_pred HHhccCCCeEEEEEEeCCCCCCCcEEEEEECCe
Confidence 345568999999999666 46 45899999875
No 338
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=98.19 E-value=1.4e-05 Score=52.44 Aligned_cols=94 Identities=22% Similarity=0.382 Sum_probs=49.9
Q ss_pred CcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCC
Q psy14540 113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNH 192 (291)
Q Consensus 113 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~ 192 (291)
+..+.+.+|+++.|.|..........+.|++.... ............ .... .......+.+..
T Consensus 8 ~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~--~~~~~i~~~~~~--~~~~--~~~~~~~~r~~~----------- 70 (114)
T PF07686_consen 8 PSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPG--QGPQLIIRYSLS--STNE--TPTPSYSGRFTF----------- 70 (114)
T ss_dssp ESEEEEETTSEEEEEEEEESSSSGSEEEEEEEETT--SEEEEEEEEETT--EEEE--EEETTETTTEEE-----------
T ss_pred CCeEEEecCCCEEEEEEEeCCCCcceEEEEEECcc--ccceeeeeeccc--eeee--ccccceeeeeee-----------
Confidence 34578889999999999952345568999983320 000000000000 0000 000000111111
Q ss_pred ceEEEEeccceEEEEeeeecCCCeeEEEEeeeC
Q psy14540 193 SSNLRVNEYTSSLSIATLSTGHSGNYTCVASNT 225 (291)
Q Consensus 193 ~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~ 225 (291)
.........+|.|.++..+|+|.|.|.+...
T Consensus 71 --~~~~~~~~~sL~i~~l~~~DsG~Y~C~v~~~ 101 (114)
T PF07686_consen 71 --SGNGSQNNFSLTIKNLQPSDSGTYFCQVSTS 101 (114)
T ss_dssp --EEETTTTEEEEEESSESGGGEEEEEEEEEES
T ss_pred --eecccCCeEEEEECCCCcCcCEEEEEEEEEC
Confidence 1111233678999999999999999988876
No 339
>KOG1480|consensus
Probab=98.17 E-value=1.6e-06 Score=71.98 Aligned_cols=202 Identities=24% Similarity=0.323 Sum_probs=111.9
Q ss_pred CcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeE-eceEEee--ccceEEEEEEeecCCCCCe---E
Q psy14540 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFV-MGQYMSL--HGDVISHVNISSVRVEDSG---I 76 (291)
Q Consensus 3 p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~-~~~~~~~--~~~~~~~l~i~~~~~~d~G---~ 76 (291)
|.|+..|.+..+..|..+.|.|.+.. .+++...-++..+...+.. ....... .......+.|.....++.+ .
T Consensus 25 ~~~~~~p~~~yii~~~p~~l~c~a~~--a~~i~~kc~~~wv~~~~~~~~~~~d~tsg~~~~~~si~Isr~~v~~~~~~~d 102 (909)
T KOG1480|consen 25 PHFTTEPKSAYIIKNKPLRLQCKANP--ATQIRFKCNSEWVHQSRHEKLEGTDETSGLGVREVSIDISRQQVETSGGPED 102 (909)
T ss_pred ceeeecCCccceecCCCccceecCCc--ccccccccChhhhcCccceeeeccCcccceeEEeeeeeeehhhhhcccCccc
Confidence 67888899999999999999998854 3333322233222211100 0000000 0111122344444444433 5
Q ss_pred EEEE--EeCCCCcee-eeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCc
Q psy14540 77 YQCT--ATNRVGSQT-HSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAE 153 (291)
Q Consensus 77 y~C~--~~~~~~~~~-~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~ 153 (291)
|.|+ +....|... ....+.+... .......+.-..+..+..+++.|....+.|...+.|++++..+.....
T Consensus 103 ~~cQc~a~~~~g~~~s~~a~vr~ay~------rk~f~~~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~pd~n 176 (909)
T KOG1480|consen 103 YWCQCVAWSDDGTVKSRKATVRIAYL------RKHFEQSPVGQEVQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDPDAN 176 (909)
T ss_pred eeeeeeeecCCCcchhhhHHHHHHHH------HHhhccChhhheecccccccccccCcccchhhhhhccccCCCCCcccc
Confidence 7776 443344111 0000011000 011112333456778888999999888899999999999988776333
Q ss_pred eEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCc-eEEEEeccceEEEEeeeecCCCeeEEEEee
Q psy14540 154 ITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHS-SNLRVNEYTSSLSIATLSTGHSGNYTCVAS 223 (291)
Q Consensus 154 ~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~-~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~ 223 (291)
.... ....+.+..+...|.|.|+|.+.|-.+..... ..+ .+.+......+.-.|.|.+.
T Consensus 177 ~~~~----~d~~li~~~arlsd~~nytc~a~ni~~~r~~~~~~v-------~vyv~ggwsswt~w~~c~~r 236 (909)
T KOG1480|consen 177 VIRA----SDHNLIISQARLSDSGNYTCEATNIVAKRKSDPATV-------QVYVNGGWSEWTEWSTCNVR 236 (909)
T ss_pred chhh----hcCCccccchhhhhcccceeeeehhhccccccceEE-------EEEEcCcccccccceeeeec
Confidence 2222 13458899999999999999999987755432 222 23333444455555655544
No 340
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=98.17 E-value=1.5e-05 Score=51.60 Aligned_cols=28 Identities=18% Similarity=0.331 Sum_probs=21.4
Q ss_pred eecCCCceEEEEEeeCCCCCceeEEeEC
Q psy14540 117 KVHSGDRAGVQCLVTKGDPPLTISWLKN 144 (291)
Q Consensus 117 ~~~~g~~~~l~C~~~~~~p~~~~~W~~~ 144 (291)
.+++|+.++|.|.+........+.||+.
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq 29 (107)
T cd07700 2 LVQTNNTVKLSCEAKGISENTRIYWLRW 29 (107)
T ss_pred EEcCCCCEEEEEEEecCCCCCeEEEEEE
Confidence 4678999999999843234558999984
No 341
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=98.16 E-value=7.9e-06 Score=51.39 Aligned_cols=78 Identities=19% Similarity=0.217 Sum_probs=45.5
Q ss_pred eecceeeeecCCcEEEEEEecCC--C-CCeeEEEECCeecCCCeeEeceEEeeccc---eEEEEEEeecCCCCCeEEEEE
Q psy14540 7 YKFIQQTLQPGPPVSLKCIATGN--P-TPHISWKLDGYPLAGDRFVMGQYMSLHGD---VISHVNISSVRVEDSGIYQCT 80 (291)
Q Consensus 7 ~~~~~~~v~~g~~v~l~C~~~~~--~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~G~y~C~ 80 (291)
..|....+..|+.++|.|.+.+. | ...++|.|++......... ......+. ..+.|.+..-.+.+.-.|+|.
T Consensus 4 ~pPs~~~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~--~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~ 81 (96)
T cd07696 4 LPPSPKQLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQ--PPESHNNATLSVTSTLNVSTDDWISGDTFQCK 81 (96)
T ss_pred cCcCHHHhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEec--ccccCCCCCEEEEEEEEeCHHHccCCCcEEEE
Confidence 44555557779999999999986 3 4568999987533211111 11111111 224455554444444589999
Q ss_pred EeCCCC
Q psy14540 81 ATNRVG 86 (291)
Q Consensus 81 ~~~~~~ 86 (291)
+.+...
T Consensus 82 V~H~~l 87 (96)
T cd07696 82 VTHPDL 87 (96)
T ss_pred EECCCC
Confidence 987653
No 342
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=98.13 E-value=7.7e-06 Score=51.02 Aligned_cols=28 Identities=32% Similarity=0.818 Sum_probs=24.8
Q ss_pred CCceEEEEEeeCCCCCceeEEeECCEec
Q psy14540 121 GDRAGVQCLVTKGDPPLTISWLKNGLPI 148 (291)
Q Consensus 121 g~~~~l~C~~~~~~p~~~~~W~~~~~~~ 148 (291)
|+.+.|.|.+..++|.+.+.|+.++..+
T Consensus 14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~ 41 (89)
T PF08205_consen 14 GEEVTLTCSSSGGYPPPQITWYLDGGPV 41 (89)
T ss_dssp TEEEEEEEEEEEEBS-EEEEEEETTCEE
T ss_pred ceEEEEEEEeCCeECCeEEEEEECCCce
Confidence 7799999998899999999999998776
No 343
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=98.10 E-value=4.1e-05 Score=49.00 Aligned_cols=76 Identities=14% Similarity=0.156 Sum_probs=50.5
Q ss_pred eeecceeeeecCCcEEEEEEecCC--CC-CeeEEEECCe-ecC-------CCeeE---ec--eEEeeccceEEEEEEeec
Q psy14540 6 IYKFIQQTLQPGPPVSLKCIATGN--PT-PHISWKLDGY-PLA-------GDRFV---MG--QYMSLHGDVISHVNISSV 69 (291)
Q Consensus 6 ~~~~~~~~v~~g~~v~l~C~~~~~--~~-~~v~W~~~~~-~~~-------~~~~~---~~--~~~~~~~~~~~~l~i~~~ 69 (291)
..++....+..|..++|.|.+.+. .. ..+.|+|... .++ .+.+. .. .-..........|++.++
T Consensus 2 l~~~~~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L 81 (115)
T cd05721 2 LVQQSPVLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNL 81 (115)
T ss_pred eeecCCeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCC
Confidence 456677789999999999999763 33 5689998321 211 01111 01 112233445688999999
Q ss_pred CCCCCeEEEEEE
Q psy14540 70 RVEDSGIYQCTA 81 (291)
Q Consensus 70 ~~~d~G~y~C~~ 81 (291)
+.+|++.|.|..
T Consensus 82 ~a~DTa~Y~Ca~ 93 (115)
T cd05721 82 RANQTDIYFCKI 93 (115)
T ss_pred CHHHCeEEEEEe
Confidence 999999999976
No 344
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=98.09 E-value=5e-05 Score=47.35 Aligned_cols=30 Identities=37% Similarity=0.564 Sum_probs=24.6
Q ss_pred CCCceEEEEEeeCCCC-CceeEEeECCEecc
Q psy14540 120 SGDRAGVQCLVTKGDP-PLTISWLKNGLPIL 149 (291)
Q Consensus 120 ~g~~~~l~C~~~~~~p-~~~~~W~~~~~~~~ 149 (291)
.|+..+|.|.+.+.+| ...++|.+||..+.
T Consensus 14 ~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~ 44 (93)
T cd05770 14 NGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP 44 (93)
T ss_pred CCCceEEEEEEEEEeCCCCEEEEEECCEECC
Confidence 4666789999976677 56899999999876
No 345
>PHA03273 envelope glycoprotein C; Provisional
Probab=98.07 E-value=0.00046 Score=54.68 Aligned_cols=79 Identities=22% Similarity=0.330 Sum_probs=55.8
Q ss_pred EEEEEeecCCCCCeEEEEEEeCCCCcee--eeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCC--c
Q psy14540 62 SHVNISSVRVEDSGIYQCTATNRVGSQT--HSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPP--L 137 (291)
Q Consensus 62 ~~l~i~~~~~~d~G~y~C~~~~~~~~~~--~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~--~ 137 (291)
..|.|..++...+|.|+=.+.+..+... ..+.+.....|... -....+.+|+...-.|.+.+.+|. .
T Consensus 198 ~~LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~yr~Psvs---------v~~~PvL~Ge~y~A~C~aa~YYPp~Sv 268 (486)
T PHA03273 198 FPLTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVSTYNAPLVD---------LSVHPSLKGENYRAVCVVASYFPHSSV 268 (486)
T ss_pred cceEEEecchhhceEEEEEEecCCCceeeeeEEEEEEecCCccc---------ccCCccccCCCceEEEEeeeecCCCce
Confidence 5699999999999999866555444433 33344445544211 122456789999999999777774 4
Q ss_pred eeEEeECCEecc
Q psy14540 138 TISWLKNGLPIL 149 (291)
Q Consensus 138 ~~~W~~~~~~~~ 149 (291)
.+.|+.|+.++.
T Consensus 269 ~~rWf~dg~~V~ 280 (486)
T PHA03273 269 KLRWYKNAKEVD 280 (486)
T ss_pred EEEEEeCCeecc
Confidence 799999999886
No 346
>smart00406 IGv Immunoglobulin V-Type.
Probab=98.07 E-value=1.3e-05 Score=48.99 Aligned_cols=63 Identities=30% Similarity=0.493 Sum_probs=38.6
Q ss_pred cEEEEEEecCCCC--CeeEEEECCe--ec---C--C---CeeE----eceEEee-c-cceEEEEEEeecCCCCCeEEEEE
Q psy14540 19 PVSLKCIATGNPT--PHISWKLDGY--PL---A--G---DRFV----MGQYMSL-H-GDVISHVNISSVRVEDSGIYQCT 80 (291)
Q Consensus 19 ~v~l~C~~~~~~~--~~v~W~~~~~--~~---~--~---~~~~----~~~~~~~-~-~~~~~~l~i~~~~~~d~G~y~C~ 80 (291)
++.|.|.+..... ..+.|++... .. . . ..+. ..+.... . ....++|.|.+++.+|+|.|.|.
T Consensus 1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~ 80 (81)
T smart00406 1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYCA 80 (81)
T ss_pred CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEc
Confidence 4789999886433 3799998432 11 0 0 0000 0111111 1 24568899999999999999996
Q ss_pred E
Q psy14540 81 A 81 (291)
Q Consensus 81 ~ 81 (291)
+
T Consensus 81 v 81 (81)
T smart00406 81 V 81 (81)
T ss_pred C
Confidence 4
No 347
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=98.05 E-value=0.00013 Score=45.67 Aligned_cols=31 Identities=35% Similarity=0.765 Sum_probs=24.7
Q ss_pred CCCceEEEEEeeCCCC-CceeEEeECCEeccC
Q psy14540 120 SGDRAGVQCLVTKGDP-PLTISWLKNGLPILS 150 (291)
Q Consensus 120 ~g~~~~l~C~~~~~~p-~~~~~W~~~~~~~~~ 150 (291)
.++..+|.|.+.+.+| ...++|.+||..+..
T Consensus 14 ~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~ 45 (94)
T cd05767 14 LGEPNTLICFVDNFFPPVLNVTWLKNGVPVTD 45 (94)
T ss_pred CCCCeEEEEEEEEEECCcCEEEEEECCeEccC
Confidence 3566799999977777 468999999988754
No 348
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.05 E-value=3.7e-05 Score=45.24 Aligned_cols=63 Identities=43% Similarity=0.771 Sum_probs=37.7
Q ss_pred eEEEEEeeCCCCCceeEEeECCEeccCCCce---EEeccCCceEEEEEeeCCCCCceeEEEEEEecC
Q psy14540 124 AGVQCLVTKGDPPLTISWLKNGLPILSDAEI---TIRSSGEYTSSLSIATLSTGHSGNYTCVASNTV 187 (291)
Q Consensus 124 ~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~---~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 187 (291)
+.|.|.+ .+.+...+.|++++......... ...........|.+..+...|.|.|.|.+.+..
T Consensus 1 ~~l~C~~-~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 66 (74)
T cd00096 1 VTLTCLA-SGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA 66 (74)
T ss_pred CEEEEEe-cCCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence 4689999 45778899999988766443321 111111224456666666666666666665543
No 349
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=98.05 E-value=5.2e-05 Score=46.52 Aligned_cols=33 Identities=33% Similarity=0.658 Sum_probs=26.9
Q ss_pred cCCCceEEEEEeeCCCCC-ceeEEeECCEeccCC
Q psy14540 119 HSGDRAGVQCLVTKGDPP-LTISWLKNGLPILSD 151 (291)
Q Consensus 119 ~~g~~~~l~C~~~~~~p~-~~~~W~~~~~~~~~~ 151 (291)
..++.++|.|.+.+.+|. ..|.|+++|..+...
T Consensus 6 ~~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~ 39 (83)
T PF07654_consen 6 ELGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEG 39 (83)
T ss_dssp HSTSEEEEEEEEEEEBSSTEEEEEEETTEEETTT
T ss_pred cCCCCEEEEEEEEEEECCCcEEEEEeccceeeee
Confidence 348899999999777884 489999999987654
No 350
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=98.04 E-value=3e-05 Score=50.37 Aligned_cols=35 Identities=26% Similarity=0.510 Sum_probs=27.6
Q ss_pred eecCCCceEEEEEeeCCCCC-ceeEEeECCEeccCC
Q psy14540 117 KVHSGDRAGVQCLVTKGDPP-LTISWLKNGLPILSD 151 (291)
Q Consensus 117 ~~~~g~~~~l~C~~~~~~p~-~~~~W~~~~~~~~~~ 151 (291)
.+.+++.++|.|.+.+.+|. ..+.|++|+..+...
T Consensus 14 e~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g 49 (115)
T cd05769 14 EIRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDG 49 (115)
T ss_pred HhccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCC
Confidence 34456789999999777886 589999999887643
No 351
>PHA03270 envelope glycoprotein C; Provisional
Probab=98.04 E-value=0.0007 Score=53.15 Aligned_cols=81 Identities=17% Similarity=0.264 Sum_probs=64.5
Q ss_pred ceEEEEeeeecCCCeeEEEEeeeCCc--cCCceeEEEEecCCCCCCCCcccccCCceEEEEEEeecCCCC--ceEEEEEC
Q psy14540 202 TSSLSIATLSTGHSGNYTCVASNTVA--SDNHSSNLRVNVPPHIGPFTFGELMEGVRTQVACVVQSGDLP--LSLQWYKN 277 (291)
Q Consensus 202 ~~~l~i~~~~~~~~g~y~C~~~~~~~--~~~~~~~l~v~~~p~~~~~~~~~~~~g~~v~l~C~~~~~~p~--~~v~W~~~ 277 (291)
...|.|..++...+|.|+=..-+..+ .....+.+..+.+|.+.+.+.. +.+|+...-+|.+-..+|+ ..+.||+|
T Consensus 181 ~~~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~yr~Psvsv~~~P-vL~Ge~Y~AtC~va~YYPp~Sv~lrWf~n 259 (466)
T PHA03270 181 TQRLVIQELTLATQGMYYWARGPADRPHRYGTWTRVRMFRRPSLSIRPHA-VLEGEPFGATCVAANYYPGDRAAFRWFEG 259 (466)
T ss_pred cceEEEEEcccccceEEEEEEecCCCceeeeeEEEEEEecCCcccccCCc-cccCCCceEEEEeeeecCCCceEEEEEeC
Confidence 56699999999999999988766553 3445567777788887776554 6799999999999666775 58999999
Q ss_pred CEEccC
Q psy14540 278 GLAISQ 283 (291)
Q Consensus 278 ~~~l~~ 283 (291)
|.++..
T Consensus 260 g~~V~~ 265 (466)
T PHA03270 260 GDEVFA 265 (466)
T ss_pred CccccC
Confidence 999864
No 352
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=98.03 E-value=6.7e-05 Score=49.59 Aligned_cols=33 Identities=18% Similarity=0.288 Sum_probs=23.5
Q ss_pred CcceeecCCCceEEEEEeeCCC-----CCceeEEeECC
Q psy14540 113 SRSIKVHSGDRAGVQCLVTKGD-----PPLTISWLKNG 145 (291)
Q Consensus 113 ~~~~~~~~g~~~~l~C~~~~~~-----p~~~~~W~~~~ 145 (291)
+..+.+.+|+.++|.|...... ....+.||+..
T Consensus 6 P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~ 43 (119)
T cd05712 6 PKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGH 43 (119)
T ss_pred CCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCC
Confidence 3446788999999999873221 13569999854
No 353
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=98.01 E-value=9.6e-05 Score=46.37 Aligned_cols=80 Identities=16% Similarity=0.244 Sum_probs=44.6
Q ss_pred ceeecceeeeecCCcEEEEEEecC-CCCCeeEEEECCeecCCCeeEeceEEeecc--ceEEEEEEeecCCCCCeEEEEEE
Q psy14540 5 LIYKFIQQTLQPGPPVSLKCIATG-NPTPHISWKLDGYPLAGDRFVMGQYMSLHG--DVISHVNISSVRVEDSGIYQCTA 81 (291)
Q Consensus 5 ~~~~~~~~~v~~g~~v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~ 81 (291)
...++............+.|.+.+ +|.+.|+|+++. .... .........+ ...+.|.+......|...|+|++
T Consensus 3 ~~~~~~~~~~~~~~~~va~C~s~~gkP~a~ItW~~~~---~~~~-~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v 78 (95)
T cd05719 3 NSAEAGPVALGGEPVTVATCVSANGKPPATISWETTL---GGEA-ETQSKENPNGTVTVTSEYRLVPSREANGKELTCVV 78 (95)
T ss_pred cccceeccccCCCccEEEEEECCCCcCCCEEEEEeCC---CCcc-eeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEE
Confidence 333443333333455678999864 999999999972 1110 1111111111 23456666554444555999999
Q ss_pred eCCCCce
Q psy14540 82 TNRVGSQ 88 (291)
Q Consensus 82 ~~~~~~~ 88 (291)
.+.....
T Consensus 79 ~h~~l~~ 85 (95)
T cd05719 79 SHPTLQE 85 (95)
T ss_pred eCcccCC
Confidence 8776443
No 354
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=98.00 E-value=0.00011 Score=46.12 Aligned_cols=27 Identities=22% Similarity=0.448 Sum_probs=22.1
Q ss_pred CCceEEEEEeeCCCCCc-eeEEeECCEe
Q psy14540 121 GDRAGVQCLVTKGDPPL-TISWLKNGLP 147 (291)
Q Consensus 121 g~~~~l~C~~~~~~p~~-~~~W~~~~~~ 147 (291)
++.++|.|.+.+.+|.. .++|+++|+.
T Consensus 14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~ 41 (93)
T cd07698 14 DGSLTLSCHATGFYPRDIEVTWLRDGED 41 (93)
T ss_pred CCcEEEEEEEEEEeCCCcEEEEEECCEE
Confidence 67899999996556754 9999999864
No 355
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=98.00 E-value=0.00013 Score=45.67 Aligned_cols=23 Identities=30% Similarity=0.705 Sum_probs=20.0
Q ss_pred CceEEEEEeeCCCCCceeEEeEC
Q psy14540 122 DRAGVQCLVTKGDPPLTISWLKN 144 (291)
Q Consensus 122 ~~~~l~C~~~~~~p~~~~~W~~~ 144 (291)
..+.+.|.+.+++|...|+|+++
T Consensus 16 ~~~va~C~s~~gkPaa~IsW~~~ 38 (95)
T cd07703 16 PVPVAKCVSANGRPPARISWSST 38 (95)
T ss_pred ccEEEEEEcCCCCCCcEEEEEcC
Confidence 34678999988999999999987
No 356
>PHA02982 hypothetical protein; Provisional
Probab=98.00 E-value=0.0007 Score=47.67 Aligned_cols=122 Identities=16% Similarity=0.266 Sum_probs=73.2
Q ss_pred eeeeecCCcEEEEEEecC-CCCCeeEEEECC-eecC---CCeeEe-----------ceEEeeccceEEEEEEeecCCCCC
Q psy14540 11 QQTLQPGPPVSLKCIATG-NPTPHISWKLDG-YPLA---GDRFVM-----------GQYMSLHGDVISHVNISSVRVEDS 74 (291)
Q Consensus 11 ~~~v~~g~~v~l~C~~~~-~~~~~v~W~~~~-~~~~---~~~~~~-----------~~~~~~~~~~~~~l~i~~~~~~d~ 74 (291)
++....|++|.|.|.+.. ....+..|+++. ..+. .+...+ .......+...++|+|.++..+..
T Consensus 33 dv~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N~ 112 (251)
T PHA02982 33 DVNATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQNL 112 (251)
T ss_pred hhhccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCcccC
Confidence 445678999999999765 445568998743 2222 111111 112223344568999999999999
Q ss_pred eEEEEEEeCCCCc-eeeeeeEEEEcCCCCCcccceeccCCcceeecCCCc-eEEEEEeeCCCCCceeEEeECCE
Q psy14540 75 GIYQCTATNRVGS-QTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDR-AGVQCLVTKGDPPLTISWLKNGL 146 (291)
Q Consensus 75 G~y~C~~~~~~~~-~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~l~C~~~~~~p~~~~~W~~~~~ 146 (291)
|-|+|++....+. ......+.|+... . ...+.++.+ ..+.|-+ ..+..+-..|..+|-
T Consensus 113 GCYtc~~ks~~~k~E~c~kCl~V~~~~------V-------~~~W~e~nNeT~V~CyV-gS~~~dvp~W~V~GV 172 (251)
T PHA02982 113 GCFTCEAKDAEGKEETCEKCLEIQKED------I-------LYVVEEHNNETIITCFV-GSKHGDVPRFIVAGI 172 (251)
T ss_pred CceEEEEecCCCchheeheeeeEecce------E-------EEEEEecCCeEEEEEEE-EeccCCCccEEEeeE
Confidence 9999999865544 3335556663321 0 123334444 4579987 343333338887664
No 357
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=97.97 E-value=4.9e-05 Score=48.87 Aligned_cols=28 Identities=25% Similarity=0.516 Sum_probs=21.5
Q ss_pred eecCCCceEEEEEeeCCCCCceeEEeECC
Q psy14540 117 KVHSGDRAGVQCLVTKGDPPLTISWLKNG 145 (291)
Q Consensus 117 ~~~~g~~~~l~C~~~~~~p~~~~~W~~~~ 145 (291)
.+.+|+.++|.|.. .......+.||+..
T Consensus 2 ~v~~G~~vtL~C~~-~~~~~~~v~Wyrq~ 29 (104)
T cd05720 2 DAELGQKVELKCEV-LNSSPTGCSWLFQP 29 (104)
T ss_pred cccCCCeEEEEEEe-cCCCCCcEEEEEeC
Confidence 35689999999998 34445679999854
No 358
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.94 E-value=2.3e-05 Score=49.16 Aligned_cols=82 Identities=21% Similarity=0.282 Sum_probs=47.9
Q ss_pred CCcce-eecceeeeecCCcEEEEEEecC-C-C-CCeeEEEECCeecCCCeeEeceEEee--ccceEEEEEEeecCCCCCe
Q psy14540 2 HPQLI-YKFIQQTLQPGPPVSLKCIATG-N-P-TPHISWKLDGYPLAGDRFVMGQYMSL--HGDVISHVNISSVRVEDSG 75 (291)
Q Consensus 2 ~p~~~-~~~~~~~v~~g~~v~l~C~~~~-~-~-~~~v~W~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~i~~~~~~d~G 75 (291)
+|.+. ..|....+..+..++|.|.+.+ . | ...|+|.++|.. . . ......... .....+.|.+..-.+....
T Consensus 3 ~PsV~l~pPs~e~l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~-~-~-~~t~~~~~~dgTys~~S~L~v~~~~W~~g~ 79 (99)
T cd04986 3 KPSLSLQRPALEDLLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK-E-A-VQTSAESDQCGCYSVSSVLPGCAEEWNKGE 79 (99)
T ss_pred CCEEEEECcChHHhCcCCccEEEEEEeccCCCCCeEEEEEECCcc-C-c-EEcCcccCCCCCEEEEEEEEeCHHHhcCCC
Confidence 35443 3344445667899999999998 4 4 467999999875 2 1 111111111 1123355666544444444
Q ss_pred EEEEEEeCCCC
Q psy14540 76 IYQCTATNRVG 86 (291)
Q Consensus 76 ~y~C~~~~~~~ 86 (291)
.|+|.+.+...
T Consensus 80 ~ytC~V~H~~l 90 (99)
T cd04986 80 PFACTVTHPEG 90 (99)
T ss_pred eEEEEEECCCc
Confidence 79999987654
No 359
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=97.94 E-value=0.00017 Score=45.16 Aligned_cols=71 Identities=17% Similarity=0.217 Sum_probs=41.9
Q ss_pred CCcEEEEEEecC-CCCCeeEEEECCeecCCCeeEeceEEeecc--ceEEEEEEeecCCCCCeEEEEEEeCCCCceeee
Q psy14540 17 GPPVSLKCIATG-NPTPHISWKLDGYPLAGDRFVMGQYMSLHG--DVISHVNISSVRVEDSGIYQCTATNRVGSQTHS 91 (291)
Q Consensus 17 g~~v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~ 91 (291)
...+.+.|.+.+ .|...|+|+++........ ......+ ...+.|.+......|...|+|++.+........
T Consensus 15 ~~~~va~C~s~~gkPaa~IsW~~~~~g~~~~~----~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~~~~~ 88 (95)
T cd07703 15 IPVPVAKCVSANGRPPARISWSSTLGGNANTT----SKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQEPQL 88 (95)
T ss_pred CccEEEEEEcCCCCCCcEEEEEcCCCCCeeEE----EEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeE
Confidence 345778998875 8999999998722111111 1111112 224567665555555559999999876544333
No 360
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=97.91 E-value=0.00023 Score=44.68 Aligned_cols=23 Identities=35% Similarity=0.728 Sum_probs=20.2
Q ss_pred CceEEEEEeeCCCCCceeEEeEC
Q psy14540 122 DRAGVQCLVTKGDPPLTISWLKN 144 (291)
Q Consensus 122 ~~~~l~C~~~~~~p~~~~~W~~~ 144 (291)
....+.|.+.+|+|.+.|+|+++
T Consensus 16 ~~~va~C~s~~gkP~a~ItW~~~ 38 (95)
T cd05719 16 PVTVATCVSANGKPPATISWETT 38 (95)
T ss_pred ccEEEEEECCCCcCCCEEEEEeC
Confidence 45678999988999999999986
No 361
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=97.87 E-value=0.00024 Score=44.36 Aligned_cols=33 Identities=21% Similarity=0.573 Sum_probs=27.8
Q ss_pred CcceeecCCCceEE-EEEeeCCCCCceeEEeECC
Q psy14540 113 SRSIKVHSGDRAGV-QCLVTKGDPPLTISWLKNG 145 (291)
Q Consensus 113 ~~~~~~~~g~~~~l-~C~~~~~~p~~~~~W~~~~ 145 (291)
.....+.+|+.+.+ .|.+..++|.+.++|+.+.
T Consensus 8 ~~~~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~ 41 (97)
T cd07704 8 GPSLLIDGGNGTTLAACCAAEGRPAADVTWETNV 41 (97)
T ss_pred CCeeEeecCcceeEEEEEccCCccCCEeEEeCCC
Confidence 34467778999999 9999899999999999753
No 362
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=97.84 E-value=0.00012 Score=45.34 Aligned_cols=77 Identities=22% Similarity=0.346 Sum_probs=46.3
Q ss_pred CCcceeecceeeeecCCcEEEEEEecC-CCC--CeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCe-EE
Q psy14540 2 HPQLIYKFIQQTLQPGPPVSLKCIATG-NPT--PHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSG-IY 77 (291)
Q Consensus 2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~-~~~--~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G-~y 77 (291)
+|.|...+ .+.+|..+++.|.+.+ .|. ..+.|+++...+....+...............+++.- +.+|.| .|
T Consensus 3 ~p~i~~~~---~l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtftp-treD~g~~f 78 (99)
T cd07689 3 DPEILLSG---PLEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFTP-TIEDIGKVL 78 (99)
T ss_pred CccCcccC---cccCCceEEEEEEecCcccCCceEEEEecCcceecccccccccccCCCCCcceeEEEec-chhhCCcEE
Confidence 34544443 3589999999999986 444 6699998776665333221111111112223455544 477777 99
Q ss_pred EEEEe
Q psy14540 78 QCTAT 82 (291)
Q Consensus 78 ~C~~~ 82 (291)
+|++.
T Consensus 79 sC~A~ 83 (99)
T cd07689 79 VCRAK 83 (99)
T ss_pred EEEEE
Confidence 99986
No 363
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=97.83 E-value=0.00016 Score=47.53 Aligned_cols=32 Identities=16% Similarity=0.354 Sum_probs=23.1
Q ss_pred CcceeecCCCceEEEEEeeCCC-CCceeEEeEC
Q psy14540 113 SRSIKVHSGDRAGVQCLVTKGD-PPLTISWLKN 144 (291)
Q Consensus 113 ~~~~~~~~g~~~~l~C~~~~~~-p~~~~~W~~~ 144 (291)
+....+.+|++++|.|...... ....+.||+.
T Consensus 4 ~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ 36 (117)
T cd04981 4 SGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQ 36 (117)
T ss_pred CCCeEEcCCCCEEEEEEEeCCCcccceEEEEEE
Confidence 3446788999999999873222 2457999984
No 364
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=97.82 E-value=0.00039 Score=43.61 Aligned_cols=33 Identities=15% Similarity=0.362 Sum_probs=25.8
Q ss_pred ecCCCceEEEEEeeCCCC-CceeEEeECCEeccC
Q psy14540 118 VHSGDRAGVQCLVTKGDP-PLTISWLKNGLPILS 150 (291)
Q Consensus 118 ~~~g~~~~l~C~~~~~~p-~~~~~W~~~~~~~~~ 150 (291)
+..++.++|.|.+.+.+| ...++|.+||..+..
T Consensus 13 ~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~ 46 (96)
T cd07697 13 IEKQGQGIYLCLLENFFPDVIQVHWREGNSPSIL 46 (96)
T ss_pred HccCCCEEEEEEEEEEeCCCeEEEEEECCEECcC
Confidence 334677899999977677 458999999998754
No 365
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.79 E-value=0.00023 Score=44.66 Aligned_cols=28 Identities=32% Similarity=0.551 Sum_probs=23.0
Q ss_pred CCCceEEEEEeeCCCC-CceeEEeECCEe
Q psy14540 120 SGDRAGVQCLVTKGDP-PLTISWLKNGLP 147 (291)
Q Consensus 120 ~g~~~~l~C~~~~~~p-~~~~~W~~~~~~ 147 (291)
.++.++|.|.+.+.+| ...|+|++||..
T Consensus 15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~ 43 (95)
T cd04985 15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS 43 (95)
T ss_pred CCCcEEEEEEEeeEECCCcEEEEeECCEE
Confidence 4567899999976677 458999999987
No 366
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=97.79 E-value=0.00036 Score=43.62 Aligned_cols=74 Identities=15% Similarity=0.212 Sum_probs=45.6
Q ss_pred eeeecCCcEEE-EEEecC-CCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCc
Q psy14540 12 QTLQPGPPVSL-KCIATG-NPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGS 87 (291)
Q Consensus 12 ~~v~~g~~v~l-~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~ 87 (291)
..+.+|+.+.+ .|.+.+ .|.+.|+|+.+...... ..........-...+.+.+......|.-.++|.+.+....
T Consensus 11 ~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~~--~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~al~ 86 (97)
T cd07704 11 LLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTSE--SHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPALQ 86 (97)
T ss_pred eEeecCcceeEEEEEccCCccCCEeEEeCCCCCccc--eeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCcccC
Confidence 45778999999 998875 89999999976332221 1000000111123356666555555666999999876543
No 367
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.76 E-value=0.00015 Score=45.55 Aligned_cols=31 Identities=19% Similarity=0.427 Sum_probs=24.3
Q ss_pred eecCCCceEEEEEeeCCC-C-CceeEEeECCEe
Q psy14540 117 KVHSGDRAGVQCLVTKGD-P-PLTISWLKNGLP 147 (291)
Q Consensus 117 ~~~~g~~~~l~C~~~~~~-p-~~~~~W~~~~~~ 147 (291)
.+..++.++|.|.+.+.+ | ...|.|.++|..
T Consensus 15 ~l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~ 47 (99)
T cd04986 15 DLLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK 47 (99)
T ss_pred HhCcCCccEEEEEEeccCCCCCeEEEEEECCcc
Confidence 344678899999997666 6 468999999875
No 368
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=97.68 E-value=0.00036 Score=43.33 Aligned_cols=35 Identities=29% Similarity=0.345 Sum_probs=27.4
Q ss_pred eecCCCceEEEEEeeCCCCC--ceeEEeECCEeccCC
Q psy14540 117 KVHSGDRAGVQCLVTKGDPP--LTISWLKNGLPILSD 151 (291)
Q Consensus 117 ~~~~g~~~~l~C~~~~~~p~--~~~~W~~~~~~~~~~ 151 (291)
.+.+|..+++.|.+.+.+|. ..+.|+++...+...
T Consensus 11 ~l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~ 47 (99)
T cd07689 11 PLEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSK 47 (99)
T ss_pred cccCCceEEEEEEecCcccCCceEEEEecCcceeccc
Confidence 34789999999999777876 689999876665443
No 369
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.66 E-value=0.0002 Score=40.51 Aligned_cols=51 Identities=27% Similarity=0.483 Sum_probs=35.0
Q ss_pred eecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEe
Q psy14540 14 LQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTAT 82 (291)
Q Consensus 14 v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~ 82 (291)
-..|.+|+|+|..... .+.|+++++.+.... ..+.+.+-. ++.|.|+|.+.
T Consensus 4 sisGTtVtlTCP~~~~---~i~W~~n~~~~~g~~--------------~~~~~~~~~-e~~G~Y~C~~~ 54 (65)
T cd07692 4 SISGTTVTVTCPLSGD---DIKWKKNDQVSQGSD--------------EKYLSLNHF-SSSGYYHCTAD 54 (65)
T ss_pred EEeccEEEEECCCCCC---CceEEeCCccCCCCC--------------ceEEeeccC-CCCceEEEEeC
Confidence 3579999999986532 399999986555211 013344444 88999999985
No 370
>smart00406 IGv Immunoglobulin V-Type.
Probab=97.59 E-value=0.00028 Score=42.91 Aligned_cols=22 Identities=32% Similarity=0.614 Sum_probs=18.5
Q ss_pred cceEEEEeeeecCCCeeEEEEe
Q psy14540 201 YTSSLSIATLSTGHSGNYTCVA 222 (291)
Q Consensus 201 ~~~~l~i~~~~~~~~g~y~C~~ 222 (291)
....|.|.+++.+|+|.|.|.+
T Consensus 60 ~~~~L~i~~~~~~D~G~Y~C~v 81 (81)
T smart00406 60 NDVSLTISNLRVEDTGTYYCAV 81 (81)
T ss_pred CEEEEEEcCCCHHHCEEEEEcC
Confidence 3567999999999999999964
No 371
>PHA02633 hypothetical protein; Provisional
Probab=97.51 E-value=0.0004 Score=38.53 Aligned_cols=38 Identities=26% Similarity=0.309 Sum_probs=31.6
Q ss_pred EEEEeecCCCCCeEEEEEEeCCCCceeeeeeEEEEcCC
Q psy14540 63 HVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAP 100 (291)
Q Consensus 63 ~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~l~v~~~~ 100 (291)
.|.|-++..+|+|.|.|.+.+..-....++.++|....
T Consensus 19 nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~~~ 56 (63)
T PHA02633 19 NMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICLRI 56 (63)
T ss_pred cEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEeecc
Confidence 38899999999999999999877777777788876543
No 372
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.48 E-value=0.00033 Score=39.69 Aligned_cols=50 Identities=30% Similarity=0.453 Sum_probs=32.4
Q ss_pred CCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEe
Q psy14540 120 SGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASN 185 (291)
Q Consensus 120 ~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~ 185 (291)
.|..|+|+|... + ..+.|.+++..+... ...+.+.+-. ++.|.|.|.+.+
T Consensus 6 sGTtVtlTCP~~-~---~~i~W~~n~~~~~g~-----------~~~~~~~~~~-e~~G~Y~C~~~~ 55 (65)
T cd07692 6 SGTTVTVTCPLS-G---DDIKWKKNDQVSQGS-----------DEKYLSLNHF-SSSGYYHCTADN 55 (65)
T ss_pred eccEEEEECCCC-C---CCceEEeCCccCCCC-----------CceEEeeccC-CCCceEEEEeCC
Confidence 689999999862 2 239999998655432 1123333444 778888887753
No 373
>PHA03271 envelope glycoprotein C; Provisional
Probab=97.48 E-value=0.015 Score=45.80 Aligned_cols=79 Identities=13% Similarity=0.235 Sum_probs=46.9
Q ss_pred CCcceeecceeeeecCCcEEEEEEecC-CC--CCeeEEEECCeecCCCeeEeceE-Eeec-c--ceEEEEEEeecCCCCC
Q psy14540 2 HPQLIYKFIQQTLQPGPPVSLKCIATG-NP--TPHISWKLDGYPLAGDRFVMGQY-MSLH-G--DVISHVNISSVRVEDS 74 (291)
Q Consensus 2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~-~~--~~~v~W~~~~~~~~~~~~~~~~~-~~~~-~--~~~~~l~i~~~~~~d~ 74 (291)
||.+.+.+.+ +.+|+...-.|.+.. .| ...+.|+.||..+.......... .... + ...++|.+.+...+..
T Consensus 247 PPsVsV~a~P--VL~Ge~YkAtC~vAnYYPP~SvrlrWf~nG~~V~~~~~rdt~~~w~d~~~g~S~VSTltl~a~~~~~P 324 (490)
T PHA03271 247 PASVDVLAPP--VLSGENYKASCIVRHFYPPGSVYVSWRQNGNIATPRKDRDGSFWWFESGRGATLVSTITLGNSGIDPP 324 (490)
T ss_pred CCCccccCCc--cccCCCceEEEEeeeecCCCceEEEEEeCCccccCccccceeEEEecCCCceeEEEEEEcccccCCCC
Confidence 5666666644 889999999999987 44 34599999998876322211111 0011 1 1234454444322333
Q ss_pred eEEEEEEe
Q psy14540 75 GIYQCTAT 82 (291)
Q Consensus 75 G~y~C~~~ 82 (291)
-..+|.+.
T Consensus 325 PsLRCeV~ 332 (490)
T PHA03271 325 PKISCLVA 332 (490)
T ss_pred CCceEEEE
Confidence 47899976
No 374
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=97.46 E-value=0.00013 Score=47.94 Aligned_cols=81 Identities=12% Similarity=0.227 Sum_probs=46.4
Q ss_pred ecCCcEEEEEEecC---C--CCCeeEEEECCeecC-----CCeeE----eceEEeeccceEEEEEEeecCCCCCeEEEEE
Q psy14540 15 QPGPPVSLKCIATG---N--PTPHISWKLDGYPLA-----GDRFV----MGQYMSLHGDVISHVNISSVRVEDSGIYQCT 80 (291)
Q Consensus 15 ~~g~~v~l~C~~~~---~--~~~~v~W~~~~~~~~-----~~~~~----~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~ 80 (291)
.-.++|.|+|.+.. . +...|.|..++..+- ..... .+.....-..+.++|.+...+.- .|+|+|.
T Consensus 25 ~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYTCe 103 (130)
T PF08204_consen 25 VCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYTCE 103 (130)
T ss_dssp TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEEEE
T ss_pred ecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceEEE
Confidence 45789999999975 1 234499999888654 11110 00111222345577888876555 8999999
Q ss_pred EeCCCCceeeeeeEEE
Q psy14540 81 ATNRVGSQTHSADMRV 96 (291)
Q Consensus 81 ~~~~~~~~~~~~~l~v 96 (291)
+..........+.|..
T Consensus 104 Vt~~~~ege~~i~Lk~ 119 (130)
T PF08204_consen 104 VTELSREGETTIELKY 119 (130)
T ss_dssp EEETTEEEEEEEEEEE
T ss_pred EEecCCCceEEEEEEE
Confidence 9876666666666655
No 375
>PHA02982 hypothetical protein; Provisional
Probab=97.37 E-value=0.0027 Score=44.85 Aligned_cols=137 Identities=17% Similarity=0.246 Sum_probs=75.9
Q ss_pred eeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCC-CCCCce
Q psy14540 116 IKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVA-SDNHSS 194 (291)
Q Consensus 116 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~-~~~~~~ 194 (291)
+....++.|.|.|....+.--.+..|+.+...... .. ..|.+..-+.|-.. .-....
T Consensus 34 v~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la-------~~---------------~~~~~~iN~~~y~~~~~kd~y 91 (251)
T PHA02982 34 VNATVDQEVKLQCLFKDADEISRAMWKGDAGFMLA-------QE---------------ANGGTGINAFNYVPGPYKDKY 91 (251)
T ss_pred hhccCCCcEEEEecCCCcchhhhheeeCCCCeEEE-------ee---------------ecCcceeccccccCCccceeE
Confidence 45567999999999865555667899875421110 00 00111111111111 112223
Q ss_pred EEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCc-eeEEEEecCCCCCCCCcccccCC-ceEEEEEEeecCCCCceE
Q psy14540 195 NLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNH-SSNLRVNVPPHIGPFTFGELMEG-VRTQVACVVQSGDLPLSL 272 (291)
Q Consensus 195 ~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~-~~~l~v~~~p~~~~~~~~~~~~g-~~v~l~C~~~~~~p~~~v 272 (291)
.+.++...++|+|+.++.++.|-|+|.+....+.... ..-|.|.....+. ...++ ..-.++|-+ +..-.+-.
T Consensus 92 ~~sv~g~~STLTIkk~~i~N~GCYtc~~ks~~~k~E~c~kCl~V~~~~V~~-----~W~e~nNeT~V~CyV-gS~~~dvp 165 (251)
T PHA02982 92 ALSVSGNSSTFTMKKPDPQNLGCFTCEAKDAEGKEETCEKCLEIQKEDILY-----VVEEHNNETIITCFV-GSKHGDVP 165 (251)
T ss_pred EEEEeccceeEEeccCCcccCCceEEEEecCCCchheeheeeeEecceEEE-----EEEecCCeEEEEEEE-EeccCCCc
Confidence 4556667899999999999999999999876643332 3344442111100 01222 345689988 43332223
Q ss_pred EEEECCEE
Q psy14540 273 QWYKNGLA 280 (291)
Q Consensus 273 ~W~~~~~~ 280 (291)
.|.-+|..
T Consensus 166 ~W~V~GVv 173 (251)
T PHA02982 166 RFIVAGIV 173 (251)
T ss_pred cEEEeeEE
Confidence 89988764
No 376
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.29 E-value=0.0015 Score=37.33 Aligned_cols=60 Identities=23% Similarity=0.452 Sum_probs=38.8
Q ss_pred CCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCceeeeeeEEE
Q psy14540 17 GPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRV 96 (291)
Q Consensus 17 g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~l~v 96 (291)
.+.|.|.|... ..|.|++ |..+.... ..+|.+.....+-.|.|.|.+.+ ......|.|
T Consensus 6 ~~~V~L~C~~~----tsi~W~k-G~~~~~~~-------------~~tlnLGs~~~DPRG~Y~C~~s~----~~~~~~LQV 63 (69)
T cd07691 6 EGKVFLKCNGA----TNITWKK-GKEILEVS-------------NTLLDLGSRINDPRGTYSCKESE----PNKEKTLQV 63 (69)
T ss_pred CceEEEEecCC----CcEEEec-Cccccccc-------------ccEEeccCcccCCCcceEecCcc----CCCcEEEEE
Confidence 46799999652 4699999 54433111 13366777778889999998864 234445555
Q ss_pred Ec
Q psy14540 97 YD 98 (291)
Q Consensus 97 ~~ 98 (291)
..
T Consensus 64 yY 65 (69)
T cd07691 64 YY 65 (69)
T ss_pred EE
Confidence 43
No 377
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.29 E-value=0.0014 Score=37.40 Aligned_cols=50 Identities=26% Similarity=0.477 Sum_probs=28.3
Q ss_pred CCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEe
Q psy14540 120 SGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASN 185 (291)
Q Consensus 120 ~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~ 185 (291)
..+.|.|+|.+ . .+|.|++ |..+.... ...+.+.....+..|.|.|.+++
T Consensus 5 ~~~~V~L~C~~-~----tsi~W~k-G~~~~~~~----------~~tlnLGs~~~DPRG~Y~C~~s~ 54 (69)
T cd07691 5 SEGKVFLKCNG-A----TNITWKK-GKEILEVS----------NTLLDLGSRINDPRGTYSCKESE 54 (69)
T ss_pred cCceEEEEecC-C----CcEEEec-Cccccccc----------ccEEeccCcccCCCcceEecCcc
Confidence 34579999975 1 4699999 55443221 12344444555555555554433
No 378
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=97.27 E-value=0.033 Score=43.75 Aligned_cols=125 Identities=20% Similarity=0.370 Sum_probs=76.7
Q ss_pred ceeeeecCCcEEEEEEecC---CCCCeeEEEECCeecC------------------CCeeEeceEEee-ccceEEEEEEe
Q psy14540 10 IQQTLQPGPPVSLKCIATG---NPTPHISWKLDGYPLA------------------GDRFVMGQYMSL-HGDVISHVNIS 67 (291)
Q Consensus 10 ~~~~v~~g~~v~l~C~~~~---~~~~~v~W~~~~~~~~------------------~~~~~~~~~~~~-~~~~~~~l~i~ 67 (291)
....+..|..|.|.|.+.- .....+.|+-.|-++. ...+.+...... .+-..++|+|.
T Consensus 272 ~~~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIk 351 (500)
T PHA02914 272 DEVMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIK 351 (500)
T ss_pred ceeEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEee
Confidence 3456777999999999873 3455689986543332 122222222111 12234889999
Q ss_pred ecCCCCCeEEEEEEeCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeec-CCCc-eEEEEEeeCC-CCCceeEEeEC
Q psy14540 68 SVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVH-SGDR-AGVQCLVTKG-DPPLTISWLKN 144 (291)
Q Consensus 68 ~~~~~d~G~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~-~g~~-~~l~C~~~~~-~p~~~~~W~~~ 144 (291)
++...++|-|+|++............|.|.... . .... +|.. ..+.|-+... ..++.+.|..+
T Consensus 352 ka~I~N~GCY~~~a~~g~~~~ec~~Cl~V~d~V--------~------f~W~~e~~n~T~V~Cyv~sy~~kp~si~wkvn 417 (500)
T PHA02914 352 KAHINNAGCYEAQAFMGKFKEECRHCFKVADHV--------F------FKWNTEGDNETKVACYAAQYDMQPFSILWKSN 417 (500)
T ss_pred eEEEEcCCceEEEEecCcchhhhhhheEeccEE--------E------EEEEeccCceEEEEEEEEecccCCceeEEEEc
Confidence 999999999999997654445555555554311 0 1111 4444 3468987444 34567999988
Q ss_pred CEec
Q psy14540 145 GLPI 148 (291)
Q Consensus 145 ~~~~ 148 (291)
|...
T Consensus 418 GV~~ 421 (500)
T PHA02914 418 GVSF 421 (500)
T ss_pred cEEe
Confidence 7554
No 379
>PHA03273 envelope glycoprotein C; Provisional
Probab=97.21 E-value=0.0034 Score=49.98 Aligned_cols=79 Identities=20% Similarity=0.266 Sum_probs=60.5
Q ss_pred eEEEEeeeecCCCeeEEEEeeeCCccCC--ceeEEEEecCCCCCCCCcccccCCceEEEEEEeecCCCC--ceEEEEECC
Q psy14540 203 SSLSIATLSTGHSGNYTCVASNTVASDN--HSSNLRVNVPPHIGPFTFGELMEGVRTQVACVVQSGDLP--LSLQWYKNG 278 (291)
Q Consensus 203 ~~l~i~~~~~~~~g~y~C~~~~~~~~~~--~~~~l~v~~~p~~~~~~~~~~~~g~~v~l~C~~~~~~p~--~~v~W~~~~ 278 (291)
..|.|..++...+|.|+=...+..+... ..+.+....+|.+.+.+.. +.+|+...-+|.+-..+|+ ..+.|++||
T Consensus 198 ~~LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~yr~Psvsv~~~P-vL~Ge~y~A~C~aa~YYPp~Sv~~rWf~dg 276 (486)
T PHA03273 198 FPLTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVSTYNAPLVDLSVHP-SLKGENYRAVCVVASYFPHSSVKLRWYKNA 276 (486)
T ss_pred cceEEEecchhhceEEEEEEecCCCceeeeeEEEEEEecCCcccccCCc-cccCCCceEEEEeeeecCCCceEEEEEeCC
Confidence 5699999999999999866545434333 4444445778887766544 6799999999999666675 589999999
Q ss_pred EEcc
Q psy14540 279 LAIS 282 (291)
Q Consensus 279 ~~l~ 282 (291)
.++.
T Consensus 277 ~~V~ 280 (486)
T PHA03273 277 KEVD 280 (486)
T ss_pred eecc
Confidence 9997
No 380
>PHA03269 envelope glycoprotein C; Provisional
Probab=97.17 E-value=0.0029 Score=50.65 Aligned_cols=81 Identities=21% Similarity=0.249 Sum_probs=61.9
Q ss_pred ceEEEEeeeecCCCeeEEEEeeeCC---ccCCceeEEEEecCCCCCCCCcccccCCceEEEEEEeecCCCC--ceEEEEE
Q psy14540 202 TSSLSIATLSTGHSGNYTCVASNTV---ASDNHSSNLRVNVPPHIGPFTFGELMEGVRTQVACVVQSGDLP--LSLQWYK 276 (291)
Q Consensus 202 ~~~l~i~~~~~~~~g~y~C~~~~~~---~~~~~~~~l~v~~~p~~~~~~~~~~~~g~~v~l~C~~~~~~p~--~~v~W~~ 276 (291)
...|.|..++..++|.|.=++.+.. ......+.|.+..+|.+.+.+.. +.+|+...-+|.+-..+|+ ..+.|++
T Consensus 288 ~~pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~yr~PsVsV~p~P-VL~Ge~YkAtC~vA~YYPp~SvrlrWf~ 366 (566)
T PHA03269 288 DFSLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSYKRPNITVIGDP-VLLGNPYAAYCKVNKYYPPHSVIVKWTS 366 (566)
T ss_pred ccceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEecCCCccccCCc-cccCCCceEEEEeeeecCCCceEEEEEe
Confidence 4568999999999999986654322 23446667777788877665544 6799999999999666775 5899999
Q ss_pred CCEEccC
Q psy14540 277 NGLAISQ 283 (291)
Q Consensus 277 ~~~~l~~ 283 (291)
||.++..
T Consensus 367 ng~~V~~ 373 (566)
T PHA03269 367 NFGNIGK 373 (566)
T ss_pred CCcccCc
Confidence 9998874
No 381
>KOG0613|consensus
Probab=97.11 E-value=0.0043 Score=55.71 Aligned_cols=179 Identities=11% Similarity=0.027 Sum_probs=97.7
Q ss_pred EEEEeecCCCCCeEEEEEEeCCCCceeeeeeEEEEcCCCC--C----------cccceeccCCcceeecCCCceEEEEEe
Q psy14540 63 HVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQ--P----------QDVKLVTSNSRSIKVHSGDRAGVQCLV 130 (291)
Q Consensus 63 ~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~l~v~~~~~~--~----------~~~~~~~~~~~~~~~~~g~~~~l~C~~ 130 (291)
+..|.+....+.+.|+|......+.....+...+...... | ............+....+..+++.|..
T Consensus 279 t~~i~~~~~~~~~s~t~~~~~~~~q~~~~v~~~~~i~~~~~~p~~~~~aaa~~~~~~v~~~~~~~v~a~d~~~v~m~~~~ 358 (1205)
T KOG0613|consen 279 TKTIQNDGPEPELSWTVADKRQGCQDRFKVTEEAPIGKGKPGPESLQAAAARPPEVPVGLVRNLSVTARDNTLVEMPTAL 358 (1205)
T ss_pred cccccccCCccccceeeecccCCcccceeeeEEeeccccccCchhhhhhccCCccccccccccceeccccCcceeecccc
Confidence 3556777777788888888766665544443333221111 0 000111122223445566778888887
Q ss_pred eCCCCCce-eEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEee
Q psy14540 131 TKGDPPLT-ISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIAT 209 (291)
Q Consensus 131 ~~~~p~~~-~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~ 209 (291)
.+.+.+. +.|++++.............. -......+.+..
T Consensus 359 -~~~~~p~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------~~~ts~~~~~~~ 399 (1205)
T KOG0613|consen 359 -SGTQKPDEAQGYHGEEVSSESLGALPCPV--------------------------------------GTVTSHTYTIKD 399 (1205)
T ss_pred -cCCcCCchheeeccccccccccccccccc--------------------------------------ccccCcchhhhh
Confidence 5666554 889887654433221100000 001133566677
Q ss_pred eecCCCeeEEEEeeeCCccCCceeEEEEec------CCCCCCCCccc--ccCCceEEEEEEeecCCC--CceEEEEECCE
Q psy14540 210 LSTGHSGNYTCVASNTVASDNHSSNLRVNV------PPHIGPFTFGE--LMEGVRTQVACVVQSGDL--PLSLQWYKNGL 279 (291)
Q Consensus 210 ~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~------~p~~~~~~~~~--~~~g~~v~l~C~~~~~~p--~~~v~W~~~~~ 279 (291)
+...+.+.|.|.|.|..+.....-...+.. ++.+....... ...-+.+.+.|.+ .+.+ ..+++|++++-
T Consensus 400 ~~~~e~~~~~~~a~n~~g~~~~~~~~~vs~~~~gt~~~~~kk~~~~t~~L~~~~~i~~~~~~-~s~~~~~~~~tt~~~~~ 478 (1205)
T KOG0613|consen 400 AGPGEGYFTRVPAVNKGGTEQTIAESTVSEEMPGTQPPKFKKDVSTTDLLTVKDEITVRTPD-SSTSMPMTTVTTIKDGL 478 (1205)
T ss_pred cCcccccccccceeccCCcccccchhhcccccCCCCCccccccccccccccCCcccccccCC-CCccccceeEeeccCCc
Confidence 777888888888888876644433333333 23333332222 3444888999988 7776 45667777765
Q ss_pred Ec
Q psy14540 280 AI 281 (291)
Q Consensus 280 ~l 281 (291)
+.
T Consensus 479 ~~ 480 (1205)
T KOG0613|consen 479 PL 480 (1205)
T ss_pred cc
Confidence 54
No 382
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=96.96 E-value=0.46 Score=47.48 Aligned_cols=192 Identities=14% Similarity=0.192 Sum_probs=109.8
Q ss_pred ceeeeecCCcEEEEEEecCCCCCeeEEEECCee-cC-CCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEe--CCC
Q psy14540 10 IQQTLQPGPPVSLKCIATGNPTPHISWKLDGYP-LA-GDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTAT--NRV 85 (291)
Q Consensus 10 ~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~-~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~--~~~ 85 (291)
....+..|+.|+|.-.........+.|..++.. .. ..... .-+....|.|...+. |..
T Consensus 1705 S~~~aavn~~V~fs~~lt~GS~vty~W~~gdG~s~~~s~p~~------------------tHtf~~~G~y~VtVta~N~v 1766 (2740)
T TIGR00864 1705 SDNPAAVNALINLSAELAEGSGLQYRWFLEEGDDLETSEPFM------------------SHSFPSAGLHLVTMKAFNEL 1766 (2740)
T ss_pred cCCcccCCCeEEEEEEecCCCCcEEEEEECCCCCcccCCCce------------------EEEccCCceEEEEEEEEccc
Confidence 344567789999887666677788999875532 11 11100 012445688877654 666
Q ss_pred CceeeeeeEEEEcCCCCCcccceeccCC-cceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceE
Q psy14540 86 GSQTHSADMRVYDAPGQPQDVKLVTSNS-RSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTS 164 (291)
Q Consensus 86 ~~~~~~~~l~v~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~ 164 (291)
+....++.+.|+++..-. .+....+ ....+..|..+.|.-.+..|. ...+.|..++..-...+..
T Consensus 1767 ss~~~s~~V~VqepV~GL---~i~~~~~~~~~~~~ag~~v~F~a~vstGs-nVsw~W~f~~g~s~~gk~v---------- 1832 (2740)
T TIGR00864 1767 GSANASEEVDVQEPISGL---KIRAADAGEQNFFAADSSVCFQGELATGT-NVSWCWAIDGGSSKMGKHA---------- 1832 (2740)
T ss_pred cccceeEEEEEEeccccc---eEecCCCCcccceecCcEEEEEEEccCCC-eeEEEEEeCCCCcccccee----------
Confidence 766667777777654211 1111111 111344577777777764444 3477887764321111000
Q ss_pred EEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEE--EeeeCCccCCceeEEEEecCCC
Q psy14540 165 SLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTC--VASNTVASDNHSSNLRVNVPPH 242 (291)
Q Consensus 165 ~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C--~~~~~~~~~~~~~~l~v~~~p~ 242 (291)
.....+.|.|+- .|.|..+....+..+.|..++.
T Consensus 1833 --------------------------------------------~~Tf~~aG~ytV~L~AsN~vs~~~~s~~~~VQe~I~ 1868 (2740)
T TIGR00864 1833 --------------------------------------------CMTFPDAGTFAIRLNASNAVSGKSASREFFAEEPIF 1868 (2740)
T ss_pred --------------------------------------------EEecCCCeEEEEEEEEEcccCcceeeeeEEEEEecc
Confidence 012234455533 4556666666777777776552
Q ss_pred -CCCCCcc-cccCCceEEEEEEeecCCCCceEEEEECC
Q psy14540 243 -IGPFTFG-ELMEGVRTQVACVVQSGDLPLSLQWYKNG 278 (291)
Q Consensus 243 -~~~~~~~-~~~~g~~v~l~C~~~~~~p~~~v~W~~~~ 278 (291)
+...... .+..|+.++|.+.+ ...+...+.|..++
T Consensus 1869 ~L~L~as~~~~~~n~~v~fsa~l-~~GS~Vtf~w~fGd 1905 (2740)
T TIGR00864 1869 GLELKASKKIAAIGEKVEFQILL-AAGSAVNFRLQIGG 1905 (2740)
T ss_pred eEEEecccccccCCCEEEEEEEe-cCCCceEEEEEeCC
Confidence 2222222 27899999999998 65568899998874
No 383
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=96.84 E-value=0.018 Score=37.10 Aligned_cols=86 Identities=14% Similarity=0.191 Sum_probs=46.8
Q ss_pred ceeecCCCceEEEEEeeCCCC--C-ceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCC
Q psy14540 115 SIKVHSGDRAGVQCLVTKGDP--P-LTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDN 191 (291)
Q Consensus 115 ~~~~~~g~~~~l~C~~~~~~p--~-~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~ 191 (291)
...+..|+.++|.|.+. +.. . ..+.|+|.... .. .-....... +. .. ....+.++|.....
T Consensus 7 ~~lv~p~~sv~LsC~~s-g~~~s~e~~~~wvRq~pg-~l-E~c~~~~~~-g~------~~-~~~~~r~tcs~~~s----- 70 (115)
T cd05721 7 PVLASSNGAASLVCEYT-YNGFSKEFRASLLKGADS-AV-EVCAVTGNM-SN------QL-QTSLDGFNCDGTLG----- 70 (115)
T ss_pred CeEEcCCCCEEEEEEec-CCccccEEEEEEEEeCCC-Cc-EEEEEEeCC-Cc------cc-cccCCCeEEeEeCC-----
Confidence 46678899999999983 422 3 57899984322 10 000000000 00 00 01123445554332
Q ss_pred CceEEEEeccceEEEEeeeecCCCeeEEEEeee
Q psy14540 192 HSSNLRVNEYTSSLSIATLSTGHSGNYTCVASN 224 (291)
Q Consensus 192 ~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~ 224 (291)
...-.|.+.+++.+|.+.|.|..+.
T Consensus 71 --------~ntv~L~l~~L~a~DTa~Y~Ca~e~ 95 (115)
T cd05721 71 --------NEQVNFTLQNLRANQTDIYFCKIEL 95 (115)
T ss_pred --------CCEEEEEEcCCCHHHCeEEEEEeee
Confidence 2345688888888888888886654
No 384
>PHA02633 hypothetical protein; Provisional
Probab=96.68 E-value=0.0047 Score=34.40 Aligned_cols=37 Identities=24% Similarity=0.394 Sum_probs=23.3
Q ss_pred eEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEec
Q psy14540 203 SSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNV 239 (291)
Q Consensus 203 ~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~ 239 (291)
..|.|-++...|+|.|.|...|..-....++.|.|..
T Consensus 18 ~nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~ 54 (63)
T PHA02633 18 NNMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICL 54 (63)
T ss_pred ccEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEee
Confidence 3456666666777777777776665555556666553
No 385
>PHA03042 CD47-like protein; Provisional
Probab=96.64 E-value=0.014 Score=43.23 Aligned_cols=69 Identities=17% Similarity=0.331 Sum_probs=43.9
Q ss_pred ecCCcEEEEEEecCC-----CCCeeEEEECCeecC-CCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCce
Q psy14540 15 QPGPPVSLKCIATGN-----PTPHISWKLDGYPLA-GDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQ 88 (291)
Q Consensus 15 ~~g~~v~l~C~~~~~-----~~~~v~W~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~ 88 (291)
.-.+++.++|.+... ....+.|..++..+- .+.. ..++|.+...+ .-.|+|+|++.+.....
T Consensus 29 ~CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~t-----------n~aSL~~~f~~-~l~GNYTCEv~~l~n~g 96 (286)
T PHA03042 29 TCNKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNT-----------NTSSLKFNFSK-NLSGNYTCEAINKFNKI 96 (286)
T ss_pred ecCceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCC-----------cceEEEEeccc-cCCCceeEEEeecccCc
Confidence 357899999998751 245599999998765 1111 11456665433 34799999998655544
Q ss_pred eeeeeEE
Q psy14540 89 THSADMR 95 (291)
Q Consensus 89 ~~~~~l~ 95 (291)
...+.+.
T Consensus 97 k~~IeLk 103 (286)
T PHA03042 97 KNTIELQ 103 (286)
T ss_pred cEEEEEE
Confidence 4444443
No 386
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=96.35 E-value=0.0012 Score=43.52 Aligned_cols=92 Identities=16% Similarity=0.221 Sum_probs=44.4
Q ss_pred ecCCCceEEEEEeeCC----CCCceeEEeECCEeccCCCc--eEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCC
Q psy14540 118 VHSGDRAGVQCLVTKG----DPPLTISWLKNGLPILSDAE--ITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDN 191 (291)
Q Consensus 118 ~~~g~~~~l~C~~~~~----~p~~~~~W~~~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~ 191 (291)
..-++.+.|.|.+..- .+...+.|.++|..+..-.. .......-.+..+
T Consensus 24 t~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i------------------------- 78 (130)
T PF08204_consen 24 TVCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKI------------------------- 78 (130)
T ss_dssp -TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BE-------------------------
T ss_pred EecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccch-------------------------
Confidence 3357889999998431 12346999998876532110 0000000000001
Q ss_pred CceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEec
Q psy14540 192 HSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNV 239 (291)
Q Consensus 192 ~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~ 239 (291)
-++...+.+|.+...+.- .|+|+|++.......+..+.|....
T Consensus 79 ----~~l~kG~aSL~~~~~~a~-~GnYTCeVt~~~~ege~~i~Lk~~~ 121 (130)
T PF08204_consen 79 ----SELLKGNASLKMDKSDAV-EGNYTCEVTELSREGETTIELKYRV 121 (130)
T ss_dssp ----GGGGGTB--EEEEHHHHH--EEEEEEEEETTEEEEEEEEEEE--
T ss_pred ----hHhhCCCEEEEEcchhcc-ccceEEEEEecCCCceEEEEEEEEE
Confidence 112234556667665544 7888888877666666667776643
No 387
>KOG4597|consensus
Probab=96.22 E-value=0.008 Score=48.05 Aligned_cols=93 Identities=12% Similarity=0.076 Sum_probs=66.4
Q ss_pred cceeecceeeeecCCcEEEEEEecCCCCCeeEEEE---CCeecC-CCeeEeceEEeeccceEEEEEEeecCCCCCeEEEE
Q psy14540 4 QLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKL---DGYPLA-GDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQC 79 (291)
Q Consensus 4 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~---~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C 79 (291)
.+.-.|....+..|++..++|-+.|.+.+.|.|.+ |+..+- ...... ....-..+..|.|-+....|+|-|+|
T Consensus 198 ~l~~cpa~w~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~~nq~~---e~p~vtstcql~ic~ewq~~a~w~tC 274 (560)
T KOG4597|consen 198 ALVDCPAEWFVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMRPNQTV---ENPVVTSTCQLVICNEWQADAGWYTC 274 (560)
T ss_pred ccccCcchhhcccchhhcccccccCCcCceeeeehhhccccceeecCcccc---CCcceeeeeeEEEcchhhcCCCceee
Confidence 44455667788999999999999999999999976 333221 111110 11112344679999999999999999
Q ss_pred EEeCCCCceeeeeeEEEEcC
Q psy14540 80 TATNRVGSQTHSADMRVYDA 99 (291)
Q Consensus 80 ~~~~~~~~~~~~~~l~v~~~ 99 (291)
.+.+..|...+.+.+.+...
T Consensus 275 s~rcg~g~~~rdv~c~s~~g 294 (560)
T KOG4597|consen 275 SARCGAGFLRRDVPCSSVKG 294 (560)
T ss_pred ccccccceeeccceeeeecc
Confidence 99998888888777766543
No 388
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=95.99 E-value=0.097 Score=32.33 Aligned_cols=69 Identities=20% Similarity=0.508 Sum_probs=45.1
Q ss_pred ecceeeeecCCcEEEEEEecCC-----CCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEe
Q psy14540 8 KFIQQTLQPGPPVSLKCIATGN-----PTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTAT 82 (291)
Q Consensus 8 ~~~~~~v~~g~~v~l~C~~~~~-----~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~ 82 (291)
.|....+..|++++..|.+... ....+.|..++..++...+.. . ....+.+++.+.....+-.|-|...
T Consensus 9 ~p~~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~~qy~~-----i-n~~~SsVT~~~~~~~~~~L~cC~l~ 82 (89)
T PF06328_consen 9 SPPSPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPGSQYRV-----I-NDTVSSVTLPNLNPTGATLFCCKLA 82 (89)
T ss_dssp ECSSSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCESTCGCEEE-----E-STTEEEEEESS--SSEEEEEEEEEC
T ss_pred ecCCCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECChhHcce-----e-CCeEEEEEEccCCCCCceEEEEEEc
Confidence 4566689999999999998742 345699999988887655543 1 2233667787776666666777643
No 389
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=95.95 E-value=0.098 Score=38.90 Aligned_cols=52 Identities=27% Similarity=0.433 Sum_probs=38.6
Q ss_pred CCceeEEeE-CCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCC
Q psy14540 135 PPLTISWLK-NGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASD 190 (291)
Q Consensus 135 p~~~~~W~~-~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~ 190 (291)
..|.+.|.. +|..+.......+.. .+.|.+.+...+++|.|+|..+...-..
T Consensus 11 iDP~y~W~GP~g~~l~gn~~~nIT~----TG~L~~~~F~esmSG~YTCtLsYk~i~~ 63 (271)
T PF07354_consen 11 IDPTYLWTGPNGKPLSGNSYVNITE----TGKLMFKNFQESMSGSYTCTLSYKPIKA 63 (271)
T ss_pred CCCceEEECCCCcccCCCCeEEEcc----CceEEeeccccccCCceEEEEEEEeccc
Confidence 467899987 455555454555553 4569999999999999999999876433
No 390
>KOG1480|consensus
Probab=95.71 E-value=0.0053 Score=52.14 Aligned_cols=74 Identities=26% Similarity=0.416 Sum_probs=54.2
Q ss_pred eeecceeeeecCCcEEEEEEecC-CCCCeeEEEECCeecCCC-eeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeC
Q psy14540 6 IYKFIQQTLQPGPPVSLKCIATG-NPTPHISWKLDGYPLAGD-RFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATN 83 (291)
Q Consensus 6 ~~~~~~~~v~~g~~v~l~C~~~~-~~~~~v~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~ 83 (291)
...|.-+.|.++..+.+.|.... .+...++|++++..+... .... .....|++..+...|.|+|+|++.+
T Consensus 133 ~~~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~pd~n~~~--------~~d~~li~~~arlsd~~nytc~a~n 204 (909)
T KOG1480|consen 133 EQSPVGQEVQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDPDANVIR--------ASDHNLIISQARLSDSGNYTCEATN 204 (909)
T ss_pred ccChhhheecccccccccccCcccchhhhhhccccCCCCCccccchh--------hhcCCccccchhhhhcccceeeeeh
Confidence 44556667889999999998764 777889999998776631 1111 1113378999999999999999987
Q ss_pred CCCc
Q psy14540 84 RVGS 87 (291)
Q Consensus 84 ~~~~ 87 (291)
-.+.
T Consensus 205 i~~~ 208 (909)
T KOG1480|consen 205 IVAK 208 (909)
T ss_pred hhcc
Confidence 6543
No 391
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=95.65 E-value=0.098 Score=33.01 Aligned_cols=35 Identities=29% Similarity=0.393 Sum_probs=25.4
Q ss_pred EEEEEeecCCCCCeEEEEEEeCCCCce-eeeeeEEE
Q psy14540 62 SHVNISSVRVEDSGIYQCTATNRVGSQ-THSADMRV 96 (291)
Q Consensus 62 ~~l~i~~~~~~d~G~y~C~~~~~~~~~-~~~~~l~v 96 (291)
.+|.|+.++..|+|.|.-++.+..|.. .+.+.+.|
T Consensus 71 laLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsV 106 (108)
T PF11465_consen 71 LALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSV 106 (108)
T ss_dssp TEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEE
T ss_pred ceEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEe
Confidence 458999999999999999999888875 33344443
No 392
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=95.57 E-value=0.12 Score=40.31 Aligned_cols=21 Identities=19% Similarity=0.387 Sum_probs=17.6
Q ss_pred cEEEEEEecC-CC-CCeeEEEEC
Q psy14540 19 PVSLKCIATG-NP-TPHISWKLD 39 (291)
Q Consensus 19 ~v~l~C~~~~-~~-~~~v~W~~~ 39 (291)
.++|+|.+.+ .| ...+.|.++
T Consensus 216 ~~tL~C~A~GFYP~~I~v~W~kd 238 (338)
T PHA02865 216 NTTLFCTFDSHYPSSVAAKWYNS 238 (338)
T ss_pred CceEEEEEEeEeCCccEEEEEec
Confidence 5799999998 44 567999999
No 393
>KOG0613|consensus
Probab=95.48 E-value=0.12 Score=47.15 Aligned_cols=153 Identities=14% Similarity=0.112 Sum_probs=79.5
Q ss_pred CceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEecc
Q psy14540 122 DRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEY 201 (291)
Q Consensus 122 ~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~ 201 (291)
..+.+.|.. |.|.+...|+.+|..+............. ...+.+...-..+.|.|.-.+.+..+.... ...
T Consensus 206 ~~v~~v~s~--gqp~~~~~~~~~g~~i~~~~~~~~s~t~e-~s~~~i~~~l~~~~G~~~~~~~~~l~e~~~------~~~ 276 (1205)
T KOG0613|consen 206 SRVRAVVSA--GQPEPLERWEILGELIAPGSAPSMSVTLE-ASDRKIQLTLRAPRGPYSAHILGYLIEQRK------HKG 276 (1205)
T ss_pred eeEEEEEec--CCCccchhhhhcccccCCCCccccccccc-hhheeeeEEeecCCCchHHHHhcchhhhcc------cCC
Confidence 345566664 88999999999998887766554433222 223444444444555444333333332222 111
Q ss_pred ceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEE----------------ecCCCCCCCCc----ccccCCceEEEEE
Q psy14540 202 TSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRV----------------NVPPHIGPFTF----GELMEGVRTQVAC 261 (291)
Q Consensus 202 ~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v----------------~~~p~~~~~~~----~~~~~g~~v~l~C 261 (291)
..+..+.+-.....+.|+|...+..+.....+...+ ..+|...+... ..+..+..+++.|
T Consensus 277 ~~t~~i~~~~~~~~~s~t~~~~~~~~q~~~~v~~~~~i~~~~~~p~~~~~aaa~~~~~~v~~~~~~~v~a~d~~~v~m~~ 356 (1205)
T KOG0613|consen 277 GNTKTIQNDGPEPELSWTVADKRQGCQDRFKVTEEAPIGKGKPGPESLQAAAARPPEVPVGLVRNLSVTARDNTLVEMPT 356 (1205)
T ss_pred CccccccccCCccccceeeecccCCcccceeeeEEeeccccccCchhhhhhccCCccccccccccceeccccCcceeecc
Confidence 223333333344444455444444333222222221 11222222111 1267788899999
Q ss_pred EeecCCCCc-eEEEEECCEEccCC
Q psy14540 262 VVQSGDLPL-SLQWYKNGLAISQP 284 (291)
Q Consensus 262 ~~~~~~p~~-~v~W~~~~~~l~~~ 284 (291)
.. .+.+.+ .+.|++++.....+
T Consensus 357 ~~-~~~~~p~~~~~~~~~~~~~~~ 379 (1205)
T KOG0613|consen 357 AL-SGTQKPDEAQGYHGEEVSSES 379 (1205)
T ss_pred cc-cCCcCCchheeeccccccccc
Confidence 98 666665 59999997665443
No 394
>PHA03042 CD47-like protein; Provisional
Probab=95.27 E-value=0.14 Score=38.28 Aligned_cols=68 Identities=25% Similarity=0.304 Sum_probs=40.6
Q ss_pred CCCceEEEEEeeCC----CCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceE
Q psy14540 120 SGDRAGVQCLVTKG----DPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSN 195 (291)
Q Consensus 120 ~g~~~~l~C~~~~~----~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~ 195 (291)
-.+.+.+.|.+..- -....+.|..++..+...+.. ..++|.+... ..-.|.|+|+|.+..........
T Consensus 30 CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~t-------n~aSL~~~f~-~~l~GNYTCEv~~l~n~gk~~Ie 101 (286)
T PHA03042 30 CNKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNT-------NTSSLKFNFS-KNLSGNYTCEAINKFNKIKNTIE 101 (286)
T ss_pred cCceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCC-------cceEEEEecc-ccCCCceeEEEeecccCccEEEE
Confidence 46789999998421 124579999998876443222 1244544432 33477888888765554444333
No 395
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=95.03 E-value=0.048 Score=40.44 Aligned_cols=46 Identities=24% Similarity=0.470 Sum_probs=32.0
Q ss_pred CCeeEEEEC-CeecCC-CeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCC
Q psy14540 31 TPHISWKLD-GYPLAG-DRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNR 84 (291)
Q Consensus 31 ~~~v~W~~~-~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~ 84 (291)
.|.+.|..+ |..+.. ....+ .. ...|.+.+...+++|.|+|.++..
T Consensus 12 DP~y~W~GP~g~~l~gn~~~nI------T~--TG~L~~~~F~esmSG~YTCtLsYk 59 (271)
T PF07354_consen 12 DPTYLWTGPNGKPLSGNSYVNI------TE--TGKLMFKNFQESMSGSYTCTLSYK 59 (271)
T ss_pred CCceEEECCCCcccCCCCeEEE------cc--CceEEeeccccccCCceEEEEEEE
Confidence 578999984 445552 22222 12 234999999999999999998753
No 396
>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily. They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.
Probab=94.75 E-value=0.56 Score=29.04 Aligned_cols=85 Identities=19% Similarity=0.246 Sum_probs=49.7
Q ss_pred cceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeC
Q psy14540 4 QLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATN 83 (291)
Q Consensus 4 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~ 83 (291)
.+.+.|....|..|+++.+.|+..-..+..+.|.-. +. +. ....+..-..+.+.|++. | ..-.|.+.-
T Consensus 5 ~v~v~P~~~vV~~G~Sv~VNCStsC~~p~~~GLET~---L~--k~-----~~~~g~~W~~f~LsnV~~-d-s~~~C~~~C 72 (91)
T PF03921_consen 5 EVRVSPEEPVVPPGGSVWVNCSTSCPQPEKIGLETS---LS--KT-----ELDSGPQWKAFQLSNVTE-D-SSPLCFFNC 72 (91)
T ss_dssp -EEEESSEEEEETTEEEEEEEEESSSS-SEEEEESS---SE--EE-----EEEEETTEEEEEEEEE-S-C-EEEEEEEEE
T ss_pred EEEEECCccEECCCCCEEEEEcCCCCCCCcceEEEe---cC--Cc-----ccCCCCcEEEEEEEcccc-C-CeEEEEEEc
Confidence 345788889999999999999986322223444311 00 00 011122234466888886 4 466798875
Q ss_pred CCCceeeeeeEEEEcCC
Q psy14540 84 RVGSQTHSADMRVYDAP 100 (291)
Q Consensus 84 ~~~~~~~~~~l~v~~~~ 100 (291)
......++..++|+..|
T Consensus 73 ~g~Q~~~~~~ItVY~~P 89 (91)
T PF03921_consen 73 SGEQSSASANITVYKPP 89 (91)
T ss_dssp TTEEEEEEEEEEEEB--
T ss_pred CCeEEEeEEeeEEeCCC
Confidence 44456777888888765
No 397
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=94.19 E-value=0.24 Score=38.74 Aligned_cols=22 Identities=14% Similarity=0.468 Sum_probs=18.6
Q ss_pred ceEEEEEeeCCCCC-ceeEEeEC
Q psy14540 123 RAGVQCLVTKGDPP-LTISWLKN 144 (291)
Q Consensus 123 ~~~l~C~~~~~~p~-~~~~W~~~ 144 (291)
.++|+|.+.+.+|. ..++|.++
T Consensus 216 ~~tL~C~A~GFYP~~I~v~W~kd 238 (338)
T PHA02865 216 NTTLFCTFDSHYPSSVAAKWYNS 238 (338)
T ss_pred CceEEEEEEeEeCCccEEEEEec
Confidence 57999999777874 58999999
No 398
>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []. EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.
Probab=93.97 E-value=1.7 Score=31.61 Aligned_cols=52 Identities=15% Similarity=0.247 Sum_probs=28.5
Q ss_pred CCeeEEEECCeecCCCeeEeceEEeecc--ceEEEEEEe-ecCCCCCeEEEEEEe
Q psy14540 31 TPHISWKLDGYPLAGDRFVMGQYMSLHG--DVISHVNIS-SVRVEDSGIYQCTAT 82 (291)
Q Consensus 31 ~~~v~W~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~i~-~~~~~d~G~y~C~~~ 82 (291)
...+.|+.||..+..............+ ...++|.+. +......-..+|.+.
T Consensus 6 S~~~~Wf~dg~~v~~~~~~~~~~~~~~G~~s~vStl~~~~~~~~~~pp~i~C~v~ 60 (211)
T PF02124_consen 6 SVRFRWFEDGNPVEPRFIRDSSQVWSDGLFSRVSTLTLPGNSADSPPPSIRCQVT 60 (211)
T ss_pred cEEEEEEECCEeCCccceeeEEEEecCCcEEEEEEEEecCCCCCCCCCcceEEEE
Confidence 3468999999988733332222222222 123556652 223333457899976
No 399
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=93.87 E-value=0.76 Score=28.42 Aligned_cols=64 Identities=20% Similarity=0.326 Sum_probs=38.7
Q ss_pred eeecCCCceEEEEEeeCCC----CCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEE
Q psy14540 116 IKVHSGDRAGVQCLVTKGD----PPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCV 182 (291)
Q Consensus 116 ~~~~~g~~~~l~C~~~~~~----p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~ 182 (291)
..+..|.+++..|....+- ....+.|..++..++......+. +..+.+++.+........|-|.
T Consensus 13 pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~~qy~~in---~~~SsVT~~~~~~~~~~L~cC~ 80 (89)
T PF06328_consen 13 PVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPGSQYRVIN---DTVSSVTLPNLNPTGATLFCCK 80 (89)
T ss_dssp SEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCESTCGCEEEES---TTEEEEEESS--SSEEEEEEEE
T ss_pred CEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECChhHcceeC---CeEEEEEEccCCCCCceEEEEE
Confidence 4677899999999985442 34579999998877655444333 2235566665554444455554
No 400
>KOG4597|consensus
Probab=93.81 E-value=0.37 Score=39.12 Aligned_cols=86 Identities=16% Similarity=0.111 Sum_probs=58.4
Q ss_pred ceeecCCCceEEEEEeeCCCCCceeEEeE---CCEeccCCCceEE-eccCCceEEEEEeeCCCCCceeEEEEEEecCCCC
Q psy14540 115 SIKVHSGDRAGVQCLVTKGDPPLTISWLK---NGLPILSDAEITI-RSSGEYTSSLSIATLSTGHSGNYTCVASNTVASD 190 (291)
Q Consensus 115 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~---~~~~~~~~~~~~~-~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~ 190 (291)
...+..++...++|-+ .|.+.+.|+|.+ |+..+........ ...-+....|.|-+....|.|.|+|.+.+..|..
T Consensus 205 ~w~vg~wetcS~tCg~-~G~q~r~V~c~qv~anr~~vv~~~nq~~e~p~vtstcql~ic~ewq~~a~w~tCs~rcg~g~~ 283 (560)
T KOG4597|consen 205 EWFVGDWETCSSTCGV-QGRQYRVVTCEQVFANRENVVMRPNQTVENPVVTSTCQLVICNEWQADAGWYTCSARCGAGFL 283 (560)
T ss_pred hhhcccchhhcccccc-cCCcCceeeeehhhccccceeecCccccCCcceeeeeeEEEcchhhcCCCceeecccccccee
Confidence 3556788999999998 799999999975 4433322211111 1111234567888888888999999999988887
Q ss_pred CCceEEEEecc
Q psy14540 191 NHSSNLRVNEY 201 (291)
Q Consensus 191 ~~~~~~~~~~~ 201 (291)
...+.+.+...
T Consensus 284 ~rdv~c~s~~g 294 (560)
T KOG4597|consen 284 RRDVPCSSVKG 294 (560)
T ss_pred eccceeeeecc
Confidence 77777664443
No 401
>PHA03286 envelope glycoprotein E; Provisional
Probab=93.80 E-value=3.1 Score=33.91 Aligned_cols=83 Identities=16% Similarity=0.121 Sum_probs=49.6
Q ss_pred EEEEEeecCCCCCeEEEEEEeCCCCceeeee-eEEEEcC----CCCCc--------ccceeccCCcceeecCCCceEEEE
Q psy14540 62 SHVNISSVRVEDSGIYQCTATNRVGSQTHSA-DMRVYDA----PGQPQ--------DVKLVTSNSRSIKVHSGDRAGVQC 128 (291)
Q Consensus 62 ~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~-~l~v~~~----~~~~~--------~~~~~~~~~~~~~~~~g~~~~l~C 128 (291)
..|+|.+++.+++|.|+-...+..+.....+ .+.|... +..+. ................|+++.+.-
T Consensus 127 ~~L~I~nAt~qnaGiYtly~rnd~~~~~~~vflVtV~~~~~~r~p~~~~pv~p~~~~~~f~l~ny~S~lF~~GDTF~vSv 206 (492)
T PHA03286 127 KELTILNASSQNAGIYIRYSRNGTRTAVMDVLVVWVSGHGRARDPTMNIPITPPSTRVDLSLKNFKAFLYNVGDTVDASV 206 (492)
T ss_pred CceEEeeccccccceEEEEEcCCCCcEEEEEEEEEEecCCCCCCCCcccCCCCcccceEEEEecccceEecCCCeEEEEE
Confidence 6699999999999999999987766544443 4455322 11010 001112233445566899998776
Q ss_pred EeeCC-CC---CceeEEeEC
Q psy14540 129 LVTKG-DP---PLTISWLKN 144 (291)
Q Consensus 129 ~~~~~-~p---~~~~~W~~~ 144 (291)
..... .. ...+.|+.-
T Consensus 207 ~l~~~~~d~~Fsl~i~W~y~ 226 (492)
T PHA03286 207 TAHLTNWAGAFSLEFRVLFL 226 (492)
T ss_pred EEeecccCCCceEEEEEEEe
Confidence 55311 11 347899873
No 402
>PHA03052 Hypothetical protein; Provisional
Probab=93.74 E-value=0.22 Score=28.36 Aligned_cols=33 Identities=18% Similarity=0.350 Sum_probs=27.3
Q ss_pred ccCCceEEEEEEeecCCCC--ceEEEEECCEEccC
Q psy14540 251 LMEGVRTQVACVVQSGDLP--LSLQWYKNGLAISQ 283 (291)
Q Consensus 251 ~~~g~~v~l~C~~~~~~p~--~~v~W~~~~~~l~~ 283 (291)
+..|..++|.|.+.-|.+. +-|.|.-|+..++.
T Consensus 9 ~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~e~ 43 (69)
T PHA03052 9 TSLGSNLTITCKVSLRPPTTDADVFWISNGMYYEE 43 (69)
T ss_pred EEccCCceEeEEEEecCCCcceEEEEEeCCcEEec
Confidence 7899999999999656554 57899999999843
No 403
>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ
Probab=93.33 E-value=1.2 Score=27.66 Aligned_cols=20 Identities=25% Similarity=0.712 Sum_probs=16.8
Q ss_pred eEEEEEeeCCCCCceeEEeE
Q psy14540 124 AGVQCLVTKGDPPLTISWLK 143 (291)
Q Consensus 124 ~~l~C~~~~~~p~~~~~W~~ 143 (291)
+.-.|.+..|.|+..|+|.-
T Consensus 23 ~VA~CiSa~GrPpa~ItW~t 42 (98)
T cd05890 23 LVATCVSANGKPPSVVRWDT 42 (98)
T ss_pred EEEEEEcCCCcCCcEeEEEc
Confidence 44589987999999999974
No 404
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=93.32 E-value=11 Score=38.75 Aligned_cols=70 Identities=14% Similarity=0.202 Sum_probs=47.7
Q ss_pred cCCCCCeEEEEEE--eCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECC
Q psy14540 69 VRVEDSGIYQCTA--TNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNG 145 (291)
Q Consensus 69 ~~~~d~G~y~C~~--~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~ 145 (291)
.+..+.|.|+-.+ .|..+....+..+.|+++... .. .......+..|+.++|.+.+. ..+...+.|...+
T Consensus 1834 ~Tf~~aG~ytV~L~AsN~vs~~~~s~~~~VQe~I~~-----L~-L~as~~~~~~n~~v~fsa~l~-~GS~Vtf~w~fGd 1905 (2740)
T TIGR00864 1834 MTFPDAGTFAIRLNASNAVSGKSASREFFAEEPIFG-----LE-LKASKKIAAIGEKVEFQILLA-AGSAVNFRLQIGG 1905 (2740)
T ss_pred EecCCCeEEEEEEEEEcccCcceeeeeEEEEEecce-----EE-EecccccccCCCEEEEEEEec-CCCceEEEEEeCC
Confidence 4677889998875 477777777777788765411 11 112334667899999999884 4457889997753
No 405
>PHA03189 UL14 tegument protein; Provisional
Probab=93.13 E-value=1.5 Score=33.62 Aligned_cols=22 Identities=14% Similarity=0.166 Sum_probs=17.9
Q ss_pred ecceeeeecCCcEEEEEEecCC
Q psy14540 8 KFIQQTLQPGPPVSLKCIATGN 29 (291)
Q Consensus 8 ~~~~~~v~~g~~v~l~C~~~~~ 29 (291)
.|.++-+..|+.+++.|.+...
T Consensus 58 spAP~l~pyGdrvtVpC~fp~H 79 (348)
T PHA03189 58 SPAPLLVPYGDRVTVPCTFPTH 79 (348)
T ss_pred CCCccccCCCceeeeeeeecCC
Confidence 3566778899999999998753
No 406
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=92.22 E-value=1.7 Score=26.89 Aligned_cols=71 Identities=17% Similarity=0.142 Sum_probs=38.2
Q ss_pred CCcceeecceeeeecC----CcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEE
Q psy14540 2 HPQLIYKFIQQTLQPG----PPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIY 77 (291)
Q Consensus 2 ~p~~~~~~~~~~v~~g----~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y 77 (291)
+|.|+..+....+... +...|.+.+.+. ...+.|+.||..+....... .+. ......|.|
T Consensus 10 ~l~I~~P~~g~~~~~~~~~~~~~~l~l~a~~~-~~~~~W~vdg~~~g~~~~~~------------~~~---~~~~~~G~h 73 (89)
T PF06832_consen 10 PLRITSPPDGAVLALDPGIPERQPLVLKAAGG-RGPVYWFVDGEPLGTTQPGH------------QLF---WQPDRPGEH 73 (89)
T ss_pred CCEEEecCCCCEEEeCCCCCccceEEEEEeCC-CCcEEEEECCEEcccCCCCC------------eEE---eCCCCCeeE
Confidence 4555554433333222 245555566554 44899999999884211110 011 233456888
Q ss_pred EEEEeCCCCce
Q psy14540 78 QCTATNRVGSQ 88 (291)
Q Consensus 78 ~C~~~~~~~~~ 88 (291)
+-.+....|..
T Consensus 74 ~l~vvD~~G~~ 84 (89)
T PF06832_consen 74 TLTVVDAQGRS 84 (89)
T ss_pred EEEEEcCCCCE
Confidence 88776666543
No 407
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=92.02 E-value=0.072 Score=33.61 Aligned_cols=24 Identities=25% Similarity=0.282 Sum_probs=11.4
Q ss_pred EEEEeeCCCCCceeEEEEEEecCC
Q psy14540 165 SLSIATLSTGHSGNYTCVASNTVA 188 (291)
Q Consensus 165 ~l~i~~~~~~d~g~y~C~~~~~~~ 188 (291)
.|.|+.++.+|+|.|..++++..|
T Consensus 72 aLlIkaAq~qDSG~Y~LEvT~~sG 95 (108)
T PF11465_consen 72 ALLIKAAQPQDSGLYCLEVTNESG 95 (108)
T ss_dssp EEEESS-SGGG-EEEEEEEEETTS
T ss_pred eEEEeecCcccCceEEEEEEcCCC
Confidence 455555555555555555555444
No 408
>PHA03052 Hypothetical protein; Provisional
Probab=91.94 E-value=0.65 Score=26.52 Aligned_cols=35 Identities=23% Similarity=0.496 Sum_probs=27.8
Q ss_pred cceeecCCCceEEEEEeeCCCC--CceeEEeECCEec
Q psy14540 114 RSIKVHSGDRAGVQCLVTKGDP--PLTISWLKNGLPI 148 (291)
Q Consensus 114 ~~~~~~~g~~~~l~C~~~~~~p--~~~~~W~~~~~~~ 148 (291)
..+.+..|..++|.|++.-+.+ .+.+.|..|+..+
T Consensus 5 ~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~ 41 (69)
T PHA03052 5 EGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYY 41 (69)
T ss_pred ccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEE
Confidence 4567888999999999976655 3578898888777
No 409
>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ
Probab=90.13 E-value=3.1 Score=25.88 Aligned_cols=66 Identities=20% Similarity=0.359 Sum_probs=36.8
Q ss_pred EEEEec-CCCCCeeEEEE--CCeecCCCeeEeceEEeec--cceEEEEEEeecCCCCCeEEEEEEeCCCCceeeeee
Q psy14540 22 LKCIAT-GNPTPHISWKL--DGYPLAGDRFVMGQYMSLH--GDVISHVNISSVRVEDSGIYQCTATNRVGSQTHSAD 93 (291)
Q Consensus 22 l~C~~~-~~~~~~v~W~~--~~~~~~~~~~~~~~~~~~~--~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~ 93 (291)
-.|.+. |.|+..|+|.- +|.. ......... -...+.+.+......|.-..+|.+.+.......++.
T Consensus 25 A~CiSa~GrPpa~ItW~t~l~G~~------etq~~~~~~GT~TV~S~y~lVPs~~~~gk~lTCvV~h~~~~~~~~~~ 95 (98)
T cd05890 25 ATCVSANGKPPSVVRWDTRLKGEA------EFQEIRNQNGTVTVISRYRLVPSREAHKQKLTCIVNYRNDRFTDSVT 95 (98)
T ss_pred EEEEcCCCcCCcEeEEEccCCCce------eeeeeCCCCCCEEEEEEEEEeECHHHcCCEeEEEEEeccccccccEE
Confidence 489855 58999999984 2221 111111111 122355556666677777999999865433333333
No 410
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=90.00 E-value=2.9 Score=25.27 Aligned_cols=19 Identities=42% Similarity=0.656 Sum_probs=15.4
Q ss_pred EEEeecCCCCCeEEEEEEe
Q psy14540 64 VNISSVRVEDSGIYQCTAT 82 (291)
Q Consensus 64 l~i~~~~~~d~G~y~C~~~ 82 (291)
+.....+..|+|.+.|.+.
T Consensus 45 ~~~~~~~~~d~G~w~C~a~ 63 (80)
T PF05790_consen 45 VSTFTPTTEDSGTWVCTAS 63 (80)
T ss_dssp EEEESBTCGGSEEEEEEEE
T ss_pred EEEecCCCCCCEEEEEEEc
Confidence 3456678899999999994
No 411
>PHA03112 IL-18 binding protein; Provisional
Probab=89.71 E-value=1.2 Score=29.97 Aligned_cols=73 Identities=12% Similarity=0.160 Sum_probs=40.6
Q ss_pred eecCCcEEEEEEecC-CCC-CeeEEEECC-eecC----C----CeeEec-eEEeeccceEEEEEEeecCCC-CCeEEEEE
Q psy14540 14 LQPGPPVSLKCIATG-NPT-PHISWKLDG-YPLA----G----DRFVMG-QYMSLHGDVISHVNISSVRVE-DSGIYQCT 80 (291)
Q Consensus 14 v~~g~~v~l~C~~~~-~~~-~~v~W~~~~-~~~~----~----~~~~~~-~~~~~~~~~~~~l~i~~~~~~-d~G~y~C~ 80 (291)
-.+++.+.|.|.+-+ .|. ..+.|..++ +... . ++.... ............|.+.+++.. +.-.++|.
T Consensus 35 ~k~~~~vvL~C~gcs~fp~fS~lYWl~gn~~s~~d~~~~~hy~e~~~~~~~~~~~~~~~~~~l~l~~vt~~~~~T~~TCV 114 (141)
T PHA03112 35 TKETEKVVLECRGCSYFPKFSYVYWLIGNNKSDVDQKPIEHYGEGIYESEKPRTCDNEPRTDLIVYNVTDEMKFTKLTCV 114 (141)
T ss_pred cCCCCEEEEEEECccCCCCceEEEEEcCCCccchhccccccccccccCCccccccCCcceeEEEEEecCCcceecceEEE
Confidence 367999999999886 354 348999754 2211 0 111111 111111234466777887755 33488888
Q ss_pred EeCCCC
Q psy14540 81 ATNRVG 86 (291)
Q Consensus 81 ~~~~~~ 86 (291)
.-...+
T Consensus 115 L~D~~~ 120 (141)
T PHA03112 115 LMDLDG 120 (141)
T ss_pred EecCCc
Confidence 764443
No 412
>PHA03240 envelope glycoprotein M; Provisional
Probab=86.47 E-value=1.5 Score=31.56 Aligned_cols=28 Identities=18% Similarity=0.209 Sum_probs=20.2
Q ss_pred eeeeecCCcEEEEEEecCCCCCeeEEEE
Q psy14540 11 QQTLQPGPPVSLKCIATGNPTPHISWKL 38 (291)
Q Consensus 11 ~~~v~~g~~v~l~C~~~~~~~~~v~W~~ 38 (291)
++++.+|++|+|.-.-...+.-.+.|++
T Consensus 32 evt~r~G~nVTLga~~~lhpgq~v~Wy~ 59 (258)
T PHA03240 32 EHTTREGDPLLLGGGHGLGAGQKAHWYK 59 (258)
T ss_pred ecccccCCceeeCCcccCCCCCEEEEEe
Confidence 4578899999996432224566799998
No 413
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=83.52 E-value=2.4 Score=25.59 Aligned_cols=17 Identities=41% Similarity=0.597 Sum_probs=9.1
Q ss_pred EEeeeecCCCeeEEEEe
Q psy14540 206 SIATLSTGHSGNYTCVA 222 (291)
Q Consensus 206 ~i~~~~~~~~g~y~C~~ 222 (291)
.......+|+|.+.|.|
T Consensus 46 ~~~~~~~~d~G~w~C~a 62 (80)
T PF05790_consen 46 STFTPTTEDSGTWVCTA 62 (80)
T ss_dssp EEESBTCGGSEEEEEEE
T ss_pred EEecCCCCCCEEEEEEE
Confidence 33344445566666666
No 414
>PHA03283 envelope glycoprotein E; Provisional
Probab=83.03 E-value=27 Score=29.47 Aligned_cols=83 Identities=19% Similarity=0.221 Sum_probs=50.0
Q ss_pred EEEEEeecCCCCCeEEEEEEeCCCCceeeeeeEEEEcCCCCCcc---c-----------ceeccCCcceeecCCCceEEE
Q psy14540 62 SHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQD---V-----------KLVTSNSRSIKVHSGDRAGVQ 127 (291)
Q Consensus 62 ~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~---~-----------~~~~~~~~~~~~~~g~~~~l~ 127 (291)
..|.|.+++.+++|.|+-...+..+.....+.++|..++..+.. . ..............|+++.+.
T Consensus 134 ~~l~I~~at~~~aGVYtly~r~d~~~~~~vflvtVk~~~~~~~~~Pp~~~pv~P~~h~a~f~v~nYhS~vf~~GDtf~ls 213 (542)
T PHA03283 134 SVLQIQRATPNIAGVYTLHVSSDGMMKHSVFFVTVKKPPKQPQTPPAPLVPQVPARHHTDFHVRGYHSRVYSPGDSFDLS 213 (542)
T ss_pred CeeEEEecccccCeEEEEEecCCCceEEEEEEEEecCCCcCCCCCCCCccccCCccCCceEEEecceeEEecCCCceeEe
Confidence 66899999999999999998876653444445566552221110 0 011122233455689998886
Q ss_pred EEeeCCC--C--CceeEEeEC
Q psy14540 128 CLVTKGD--P--PLTISWLKN 144 (291)
Q Consensus 128 C~~~~~~--p--~~~~~W~~~ 144 (291)
-...... + ...+.|+.-
T Consensus 214 i~l~s~~~d~~fs~~i~Wyy~ 234 (542)
T PHA03283 214 VHLESDIGDPSFSATIDWYYM 234 (542)
T ss_pred EEEeeccCCCCceEEEEEEEe
Confidence 6553221 2 347899873
No 415
>KOG1026|consensus
Probab=81.48 E-value=5.3 Score=35.43 Aligned_cols=153 Identities=19% Similarity=0.263 Sum_probs=81.7
Q ss_pred eeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCceeee
Q psy14540 12 QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQTHS 91 (291)
Q Consensus 12 ~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~ 91 (291)
..+..|..+++.|...+.+.+.+.|+.++............-. ....... .+.|...+..+.....
T Consensus 202 ~~v~~~~~~~~~c~~~~~~vp~~~~~~~~~~~~~~~~~~~~c~--------~~~~~~~------~~~c~~E~~~~~~~~~ 267 (774)
T KOG1026|consen 202 LTVEEGSSITLKCSQAGIPVPCHYWFPNCLASSNTNQTSSLCR--------SECEVLE------NDLCIAENAVARSNPS 267 (774)
T ss_pred hhhcccchheeeeecccCCCcceeeecccccccCCCccccccc--------ccceeee------chhhHHHHhhhhcCce
Confidence 4578899999999999999999999987655442111110000 0111111 1889888777776666
Q ss_pred eeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEee--CCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEe
Q psy14540 92 ADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVT--KGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIA 169 (291)
Q Consensus 92 ~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~--~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~ 169 (291)
+.+.+..+...- ....+. +. .-.|... .+.|.+...|..++..+...........+. ...+...
T Consensus 268 v~~~~~~p~~~~-----~~~~~~------~~--~~~C~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~t~s~~-~~C~~~~ 333 (774)
T KOG1026|consen 268 ILLVVDLPKAEV-----LLCSPL------SD--HHNCIPIGITANPGPALHWCYNGSGLNYRGTVCVTKSGK-EQCLPWN 333 (774)
T ss_pred eeeEEecccccc-----cCCCCc------cc--cCceeeeeccCCCCCceeeeecCccceEecccccccccC-cCCcccC
Confidence 666655432110 000000 00 1223221 256677888888776543322222111111 0222333
Q ss_pred eCCCCCceeEEEEEEecCCCCCC
Q psy14540 170 TLSTGHSGNYTCVASNTVASDNH 192 (291)
Q Consensus 170 ~~~~~d~g~y~C~~~~~~~~~~~ 192 (291)
..+-.+.|.|+|.+.+..|....
T Consensus 334 ~~~h~~~~~~~~~~e~~~g~~~~ 356 (774)
T KOG1026|consen 334 DPPHSHNGNYTLFPELPGGKNYC 356 (774)
T ss_pred cCcccccCcceeeecccCccccc
Confidence 33456788899999888765543
No 416
>PHA03240 envelope glycoprotein M; Provisional
Probab=81.39 E-value=9.9 Score=27.62 Aligned_cols=28 Identities=14% Similarity=0.054 Sum_probs=20.4
Q ss_pred ceeecCCCceEEEEEeeCCCCCceeEEeE
Q psy14540 115 SIKVHSGDRAGVQCLVTKGDPPLTISWLK 143 (291)
Q Consensus 115 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~ 143 (291)
.+.+.+|++|+|.-.- ...|...+.|++
T Consensus 32 evt~r~G~nVTLga~~-~lhpgq~v~Wy~ 59 (258)
T PHA03240 32 EHTTREGDPLLLGGGH-GLGAGQKAHWYK 59 (258)
T ss_pred ecccccCCceeeCCcc-cCCCCCEEEEEe
Confidence 3567789999887543 234677899998
No 417
>PHA03282 envelope glycoprotein E; Provisional
Probab=81.32 E-value=30 Score=28.78 Aligned_cols=24 Identities=29% Similarity=0.462 Sum_probs=20.6
Q ss_pred ceEEEEeeeecCCCeeEEEEeeeC
Q psy14540 202 TSSLSIATLSTGHSGNYTCVASNT 225 (291)
Q Consensus 202 ~~~l~i~~~~~~~~g~y~C~~~~~ 225 (291)
.-.|.|.+...+++|.|.|.+.-.
T Consensus 332 ~VdL~F~nAp~saSGLYVfVl~yN 355 (540)
T PHA03282 332 TVNLQLRDASEASGGLYVCVVYVN 355 (540)
T ss_pred ccceEecCCCcccCceEEEEEEEC
Confidence 458999999999999999988643
No 418
>PHA03283 envelope glycoprotein E; Provisional
Probab=79.20 E-value=25 Score=29.72 Aligned_cols=28 Identities=14% Similarity=0.280 Sum_probs=18.4
Q ss_pred ccCCceEEEEEEeecCC--C--CceEEEEECC
Q psy14540 251 LMEGVRTQVACVVQSGD--L--PLSLQWYKNG 278 (291)
Q Consensus 251 ~~~g~~v~l~C~~~~~~--p--~~~v~W~~~~ 278 (291)
...|+++.+.-...... + ..+|.|+.-.
T Consensus 204 f~~GDtf~lsi~l~s~~~d~~fs~~i~Wyy~p 235 (542)
T PHA03283 204 YSPGDSFDLSVHLESDIGDPSFSATIDWYYMN 235 (542)
T ss_pred ecCCCceeEeEEEeeccCCCCceEEEEEEEec
Confidence 57888888877663222 2 2589999753
No 419
>PF05955 Herpes_gp2: Equine herpesvirus glycoprotein gp2; InterPro: IPR010278 This entry consists of a number of glycoprotein Gp2 sequences mainly found from equine herpesviruses [].; GO: 0016032 viral reproduction, 0016021 integral to membrane
Probab=76.48 E-value=24 Score=24.91 Aligned_cols=161 Identities=14% Similarity=0.139 Sum_probs=72.0
Q ss_pred EEEEEEecCCCCCeeEEEECCeecC-CCeeEeceEEe----eccceEEEEEEeecCCCCCeEEEEEEeCCC---Cce-ee
Q psy14540 20 VSLKCIATGNPTPHISWKLDGYPLA-GDRFVMGQYMS----LHGDVISHVNISSVRVEDSGIYQCTATNRV---GSQ-TH 90 (291)
Q Consensus 20 v~l~C~~~~~~~~~v~W~~~~~~~~-~~~~~~~~~~~----~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~---~~~-~~ 90 (291)
+.-.|.+..+....+.|+.+...+. ..+.....+.. ......++|.+.-+..----..+|.+--.. +.. ..
T Consensus 4 l~A~CtVetn~~ls~fWkigk~svDaf~rgtthTR~mrngvpvyalVstlk~pw~nviplt~ITCaaC~~nf~~g~~~dl 83 (226)
T PF05955_consen 4 LEASCTVETNSGLSFFWKIGKASVDAFNRGTTHTRLMRNGVPVYALVSTLKVPWLNVIPLTKITCAACPTNFVAGDENDL 83 (226)
T ss_pred eeeEEEEEecCceEEEEEeCCeeEeeecCCceeeeeeeCcEehhheeehhcccccccccccEEEehhcchhhcccCcCCc
Confidence 3457888777777899998776554 11111111111 112233455544333333346788764211 111 11
Q ss_pred eeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEe-ccCCc-----eE
Q psy14540 91 SADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIR-SSGEY-----TS 164 (291)
Q Consensus 91 ~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~-~~~~~-----~~ 164 (291)
.....+. ...|-+ .............-.-.|....-...|.++|......+.++.....- ...++ .+
T Consensus 84 ~sCt~ks--ttIPCp-----gqqrthIfFs~kg~rAvCitseL~s~PtitWsVgs~rl~n~gftqtwy~iqPGvCgilrS 156 (226)
T PF05955_consen 84 NSCTTKS--TTIPCP-----GQQRTHIFFSAKGHRAVCITSELVSQPTITWSVGSDRLRNDGFTQTWYGIQPGVCGILRS 156 (226)
T ss_pred ceeEeec--ccccCC-----CcceEEEEEeccCcEEEEeeccccCCCeEEEEeccceeecCCccceeecccCcceeeEee
Confidence 1111111 101100 11111111111122346877556668899998766666544322210 00011 22
Q ss_pred EEEEeeCCCCCceeEEEEEEecC
Q psy14540 165 SLSIATLSTGHSGNYTCVASNTV 187 (291)
Q Consensus 165 ~l~i~~~~~~d~g~y~C~~~~~~ 187 (291)
...+......+.-.|.|.+.-..
T Consensus 157 ~v~~~R~~G~~~~~y~c~~~~~D 179 (226)
T PF05955_consen 157 EVRIPRAEGRDNVDYLCEIRALD 179 (226)
T ss_pred eeecccCCCCCcccEEecccccc
Confidence 34455555556666777765443
No 420
>PHA03112 IL-18 binding protein; Provisional
Probab=73.78 E-value=19 Score=24.50 Aligned_cols=28 Identities=14% Similarity=0.056 Sum_probs=22.0
Q ss_pred ccCCceEEEEEEeecCCCC-ceEEEEECC
Q psy14540 251 LMEGVRTQVACVVQSGDLP-LSLQWYKNG 278 (291)
Q Consensus 251 ~~~g~~v~l~C~~~~~~p~-~~v~W~~~~ 278 (291)
..+++.+.|+|.+-+.+|. .-+.|..++
T Consensus 35 ~k~~~~vvL~C~gcs~fp~fS~lYWl~gn 63 (141)
T PHA03112 35 TKETEKVVLECRGCSYFPKFSYVYWLIGN 63 (141)
T ss_pred cCCCCEEEEEEECccCCCCceEEEEEcCC
Confidence 3679999999999545565 678999776
No 421
>PF10572 UPF0556: Uncharacterised protein family UPF0556; InterPro: IPR018887 This family of proteins has no known function.
Probab=70.95 E-value=18 Score=24.95 Aligned_cols=41 Identities=15% Similarity=0.431 Sum_probs=24.6
Q ss_pred eeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCc
Q psy14540 177 GNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVA 227 (291)
Q Consensus 177 g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~ 227 (291)
|.|+|..+....... +-...+.--..+|.+.|+|.+..+.+
T Consensus 44 ~~~~C~FTYAaqGGT----------NEqW~msi~~s~d~~~~sC~I~RPqg 84 (158)
T PF10572_consen 44 GKYKCTFTYAAQGGT----------NEQWQMSIGLSDDNGHYSCIIWRPQG 84 (158)
T ss_pred CceEEEEEEEecCCc----------cceEEEEeeecCCCCceEEEEECCCC
Confidence 378998876543222 11222233345688899999887765
No 422
>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []. EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.
Probab=67.17 E-value=48 Score=24.46 Aligned_cols=23 Identities=13% Similarity=0.237 Sum_probs=17.0
Q ss_pred EEEEEeecCCCC--ceEEEEECCEEc
Q psy14540 258 QVACVVQSGDLP--LSLQWYKNGLAI 281 (291)
Q Consensus 258 ~l~C~~~~~~p~--~~v~W~~~~~~l 281 (291)
...|.+ ..-|. ..++|+-++...
T Consensus 93 ~AVC~A-~CVP~~~v~l~W~v~d~~~ 117 (211)
T PF02124_consen 93 YAVCTA-RCVPRGNVTLRWSVGDDPS 117 (211)
T ss_pred EEEEEc-ceeeCCCeEEEEEECCccC
Confidence 456888 66662 799999988764
No 423
>PRK14081 triple tyrosine motif-containing protein; Provisional
Probab=66.55 E-value=96 Score=27.66 Aligned_cols=208 Identities=14% Similarity=0.185 Sum_probs=108.0
Q ss_pred eeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEe--CCCC----
Q psy14540 13 TLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTAT--NRVG---- 86 (291)
Q Consensus 13 ~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~--~~~~---- 86 (291)
....|+.+.|...+.|.....+.....|.......+... . --+-++..+|.|.-.+. ....
T Consensus 301 ~ql~g~~I~ika~a~GG~~llYrf~I~G~~~e~~~Y~~~----------n---~~~w~P~~~G~Y~I~v~VKDk~S~~ey 367 (667)
T PRK14081 301 PQLTDTDIELKAVAEGGKELLYRFIIKGKESEDSGYIRN----------N---IYTWKPKIAGKYSITLWVKDISSKGEY 367 (667)
T ss_pred CeecCceEEEEEEecCCCceEEEEEECCcEEeecccccc----------c---eEEEeeCCCceEEEEEEEEcCcCcccc
Confidence 356899999999998755555554445544332111111 1 12234556888988765 2111
Q ss_pred ceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeE-E-eECCEeccCCCceEEeccCCceE
Q psy14540 87 SQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTIS-W-LKNGLPILSDAEITIRSSGEYTS 164 (291)
Q Consensus 87 ~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~-W-~~~~~~~~~~~~~~~~~~~~~~~ 164 (291)
.....+.+.+...+..|......... .......|+.+.+.|.+.++. ...+. | .++|..+.......
T Consensus 368 D~~~~v~f~i~~~~~~p~~I~~vl~d-~~~~~lvG~~i~i~v~a~gg~-~~lY~f~ik~ng~~ve~~~Y~~--------- 436 (667)
T PRK14081 368 EDKSSIDYTIEEKSKEPIKIEDVILD-KGKHILKGEEIKIRVIAEGGT-NLRYSFIIKKDGKEEEKIDYGK--------- 436 (667)
T ss_pred cceEEEEEEEcccCCCCeEEEEEEEC-CCCceEeCCeEEEEEEecCCC-eEEEEEEEEECCEEEEEeeccc---------
Confidence 23455666666654444222222222 123455699999999986554 33332 2 34665543211000
Q ss_pred EEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEee--eCC----ccCCceeEEEEe
Q psy14540 165 SLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVAS--NTV----ASDNHSSNLRVN 238 (291)
Q Consensus 165 ~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~--~~~----~~~~~~~~l~v~ 238 (291)
...+.+ .+.-+|.|+-.+. +.. -.....+.+.|+
T Consensus 437 -------------------------------------~~~~~f---~P~~~G~Y~IeV~vKdk~S~~~yD~~k~v~l~V~ 476 (667)
T PRK14081 437 -------------------------------------NNWVNF---IPEEKGNYELEVRVKDKYSDKEYDAHTIVYIKVH 476 (667)
T ss_pred -------------------------------------ccEEEE---EECCCeeEEEEEEEecccCchhcccceEEEEEEe
Confidence 011111 2244566655443 221 223556677777
Q ss_pred c-CCC-CCC---CCcccccCCceEEEEEEeecCCCCc--eEEEEECCEEccCCe
Q psy14540 239 V-PPH-IGP---FTFGELMEGVRTQVACVVQSGDLPL--SLQWYKNGLAISQPD 285 (291)
Q Consensus 239 ~-~p~-~~~---~~~~~~~~g~~v~l~C~~~~~~p~~--~v~W~~~~~~l~~~~ 285 (291)
. .|. +.- +.......|+.++++|.+..+ -.. ++.-+.||..+...+
T Consensus 477 e~~P~~i~~il~~~~~~~~vg~~i~~~~~~~~~-k~v~y~y~~~~NG~~v~~t~ 529 (667)
T PRK14081 477 EYIPAEIDYILLPVKEYYLVGDDIEIEVIIQNT-KDVLIKYILKINGHKVEETD 529 (667)
T ss_pred ccCceeeeeEEecccccEEeCCEEEEEEEEeCC-CeEEEEEEEEECCEEEEEee
Confidence 5 342 221 222337899999999999443 343 445557777664433
No 424
>PF11141 DUF2914: Protein of unknown function (DUF2914); InterPro: IPR022606 This bacterial family of proteins has no known function.
Probab=66.06 E-value=23 Score=20.42 Aligned_cols=59 Identities=14% Similarity=0.125 Sum_probs=34.3
Q ss_pred CeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCceeeeeeEEE
Q psy14540 32 PHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRV 96 (291)
Q Consensus 32 ~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~l~v 96 (291)
....|+++++.+..-.+.+. +...-+..-........|.+++.+....|..-....+.|
T Consensus 7 v~H~W~~~g~~~~~i~l~i~------g~r~Rt~S~k~~~~~~~G~WrV~V~~~~G~~l~~~~F~V 65 (66)
T PF11141_consen 7 VYHRWYKNGKLVARIPLPIS------GGRWRTWSSKQNFPDQPGDWRVEVVDEDGQVLGSLRFSV 65 (66)
T ss_pred EEEEEEECCEEEEEEEEecc------CCCEEEEEEeecCCCCCcCEEEEEEcCCCCEEEEEEEEE
Confidence 45789999987653222221 111111222334447889999999888777655555443
No 425
>PF05955 Herpes_gp2: Equine herpesvirus glycoprotein gp2; InterPro: IPR010278 This entry consists of a number of glycoprotein Gp2 sequences mainly found from equine herpesviruses [].; GO: 0016032 viral reproduction, 0016021 integral to membrane
Probab=65.71 E-value=40 Score=23.88 Aligned_cols=60 Identities=27% Similarity=0.419 Sum_probs=36.9
Q ss_pred EEecC-CCCCeeEEEECCeecCCCeeEeceEEeec---cceEEEEEEeecCCCCCeEEEEEEeC
Q psy14540 24 CIATG-NPTPHISWKLDGYPLAGDRFVMGQYMSLH---GDVISHVNISSVRVEDSGIYQCTATN 83 (291)
Q Consensus 24 C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~i~~~~~~d~G~y~C~~~~ 83 (291)
|.... ...|.++|......+.++.+...-+.... +...+.+.|...+-.|.-.|.|.+..
T Consensus 114 CitseL~s~PtitWsVgs~rl~n~gftqtwy~iqPGvCgilrS~v~~~R~~G~~~~~y~c~~~~ 177 (226)
T PF05955_consen 114 CITSELVSQPTITWSVGSDRLRNDGFTQTWYGIQPGVCGILRSEVRIPRAEGRDNVDYLCEIRA 177 (226)
T ss_pred EeeccccCCCeEEEEeccceeecCCccceeecccCcceeeEeeeeecccCCCCCcccEEecccc
Confidence 44433 44678999887766664443332221222 23446677888888888899999863
No 426
>KOG1026|consensus
Probab=61.71 E-value=1.2 Score=39.19 Aligned_cols=164 Identities=16% Similarity=0.124 Sum_probs=80.3
Q ss_pred eeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceE
Q psy14540 116 IKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSN 195 (291)
Q Consensus 116 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~ 195 (291)
.....++...+.|.+ .+.+...+.|.++...+...-+............+........+.|.+.|...+..........
T Consensus 62 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~l 140 (774)
T KOG1026|consen 62 ITEIFIENGQLLCIV-SGNDVENYTGLRNLTIVVSGLRFSQPRAFHYNSRLRRDNLSTNDTGVLGSLSTNGFETLSLTEL 140 (774)
T ss_pred HHHHHHhhhhhcccc-cCCCcccchhhhccCcccchhheecccceeccccccccccchhhhccccccccccccccccchh
Confidence 334456777888988 5555558899887666544333222211112223444455555566666665554433222221
Q ss_pred EEEecc---------ceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCCCCCCCCc-ccccCCceEEEEEEeec
Q psy14540 196 LRVNEY---------TSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGPFTF-GELMEGVRTQVACVVQS 265 (291)
Q Consensus 196 ~~~~~~---------~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p~~~~~~~-~~~~~g~~v~l~C~~~~ 265 (291)
..+... ...+.... ...+...+.|......+. -....+.....+....... ..+..|..+++.|.+ .
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~e~~-~~~~~~~~~c~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~c~~-~ 217 (774)
T KOG1026|consen 141 SLVGNPFTCSCSIRWLDRYREDG-FCVPYRGLACLNFLSNGT-VANESIQLCGEIENRIRAANLTVEEGSSITLKCSQ-A 217 (774)
T ss_pred hhccCCCCcchhhhHHhhhcccC-CCCCchhhHHHhhcCCce-ehhhhhhhhcchhhhhhhhhhhhcccchheeeeec-c
Confidence 111110 00111111 112223334444332100 0000111111222211112 228899999999999 9
Q ss_pred CCCCceEEEEECCEEccC
Q psy14540 266 GDLPLSLQWYKNGLAISQ 283 (291)
Q Consensus 266 ~~p~~~v~W~~~~~~l~~ 283 (291)
+.|.+...|+.++....+
T Consensus 218 ~~~vp~~~~~~~~~~~~~ 235 (774)
T KOG1026|consen 218 GIPVPCHYWFPNCLASSN 235 (774)
T ss_pred cCCCcceeeecccccccC
Confidence 999999999988766654
No 427
>KOG0200|consensus
Probab=57.51 E-value=1.4e+02 Score=26.54 Aligned_cols=22 Identities=36% Similarity=0.560 Sum_probs=19.0
Q ss_pred EEEEEeecCCCCCeEEEEEEeC
Q psy14540 62 SHVNISSVRVEDSGIYQCTATN 83 (291)
Q Consensus 62 ~~l~i~~~~~~d~G~y~C~~~~ 83 (291)
..+.+..+...+.|.|+|.+.+
T Consensus 13 ~~~~~~~~~~~~~~~y~~~~~~ 34 (609)
T KOG0200|consen 13 WFLIIDSVVPGDKGFYTCLVSN 34 (609)
T ss_pred ceEEEEEEEecCCccEEEEEec
Confidence 4477888899999999999987
No 428
>PHA03281 envelope glycoprotein E; Provisional
Probab=57.15 E-value=1.3e+02 Score=25.97 Aligned_cols=77 Identities=18% Similarity=0.248 Sum_probs=49.3
Q ss_pred ceEEEEeeeecCCCeeEEEEeeeCCccCCc-eeEEEEecC-------CCCCCCCcc-----------cccCCceEEEEEE
Q psy14540 202 TSSLSIATLSTGHSGNYTCVASNTVASDNH-SSNLRVNVP-------PHIGPFTFG-----------ELMEGVRTQVACV 262 (291)
Q Consensus 202 ~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~-~~~l~v~~~-------p~~~~~~~~-----------~~~~g~~v~l~C~ 262 (291)
.+.|.|.+++.+++|.|+-......|.... .+.|.|... |.+.+.... ....|+++.+.-.
T Consensus 297 ~~vL~I~nAT~~naGVYtly~rg~~G~s~~svfLVtVkg~~~~rip~p~Vtpk~hga~F~vknYhShVF~pGDTFsl~v~ 376 (642)
T PHA03281 297 PGVLKFEHMEAHHAGVYIWNLQGSDGENMYATFLVKLKGDEENHIDLPAVTPKPKGAEFHMWHYHSHVFSVGDTFSLAMH 376 (642)
T ss_pred CCeeEEEecccccceeEEEEecCCCCcceeEEEEEEecCCcccCCCCCCccccccCceEEEeccceeEecCCCeeEEEEE
Confidence 468999999999999999887755554444 556666541 222222220 0568888888776
Q ss_pred eecC--C--CCceEEEEECC
Q psy14540 263 VQSG--D--LPLSLQWYKNG 278 (291)
Q Consensus 263 ~~~~--~--p~~~v~W~~~~ 278 (291)
.... . -..+|.|+.-.
T Consensus 377 L~s~ihD~pFsleI~Wyy~p 396 (642)
T PHA03281 377 LQYKIHDAPFDLLLEWLYVP 396 (642)
T ss_pred EeeeccCCCceeEEEEEEec
Confidence 6322 1 23589999743
No 429
>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily. They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.
Probab=56.96 E-value=46 Score=20.78 Aligned_cols=18 Identities=22% Similarity=0.289 Sum_probs=15.3
Q ss_pred CcceeecCCCceEEEEEe
Q psy14540 113 SRSIKVHSGDRAGVQCLV 130 (291)
Q Consensus 113 ~~~~~~~~g~~~~l~C~~ 130 (291)
+....+..|+++.+.|..
T Consensus 10 P~~~vV~~G~Sv~VNCSt 27 (91)
T PF03921_consen 10 PEEPVVPPGGSVWVNCST 27 (91)
T ss_dssp SSEEEEETTEEEEEEEEE
T ss_pred CCccEECCCCCEEEEEcC
Confidence 445778899999999997
No 430
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=56.48 E-value=44 Score=20.47 Aligned_cols=25 Identities=20% Similarity=0.379 Sum_probs=16.4
Q ss_pred ceEEEEEeeCCCCCceeEEeECCEecc
Q psy14540 123 RAGVQCLVTKGDPPLTISWLKNGLPIL 149 (291)
Q Consensus 123 ~~~l~C~~~~~~p~~~~~W~~~~~~~~ 149 (291)
...|.+++..+ ...+.||.||..+.
T Consensus 31 ~~~l~l~a~~~--~~~~~W~vdg~~~g 55 (89)
T PF06832_consen 31 RQPLVLKAAGG--RGPVYWFVDGEPLG 55 (89)
T ss_pred cceEEEEEeCC--CCcEEEEECCEEcc
Confidence 34445554334 33999999999983
No 431
>PF09085 Adhes-Ig_like: Adhesion molecule, immunoglobulin-like; InterPro: IPR015169 This domain is found in mucosal vascular addressin cell adhesion molecule 1 proteins (MAdCAM-1). These are cell adhesion molecules expressed on the endothelium in mucosa that guide the specific homing of lymphocytes into mucosal tissues. MAdCAM-1 belongs to a subclass of the immunoglobulin superfamily (IgSF), the members of which are ligands for integrins []. The crystal structure of this domain has been reported; it adopts an immunoglobulin-like beta-sandwich structure, with seven strands arranged in two beta-sheets in a Greek-key topology [, ].; GO: 0007155 cell adhesion, 0016020 membrane; PDB: 1GSM_A 1BQS_A.
Probab=53.23 E-value=39 Score=21.16 Aligned_cols=39 Identities=28% Similarity=0.361 Sum_probs=25.7
Q ss_pred cceeecceeeeecCCcEEEEEEecC----CC-CCeeEEEECCeecC
Q psy14540 4 QLIYKFIQQTLQPGPPVSLKCIATG----NP-TPHISWKLDGYPLA 44 (291)
Q Consensus 4 ~~~~~~~~~~v~~g~~v~l~C~~~~----~~-~~~v~W~~~~~~~~ 44 (291)
++++.|. .+..|..-.+-|++.. .| ..++.|+.+++.+.
T Consensus 5 qLtVSP~--~LVpg~dqevaCTAhnVtP~~p~~LSfslllGdqeLe 48 (110)
T PF09085_consen 5 QLTVSPE--ALVPGRDQEVACTAHNVTPADPDALSFSLLLGDQELE 48 (110)
T ss_dssp EEEEESS--SB-TT--SEEEEEEEEEB--STTTEEEEEEETTEE-T
T ss_pred ceeEChh--HhccCCCceeeeeeccccCCCCCeEEeeeeeCceeec
Confidence 4555554 4788999999999864 22 45699999998876
No 432
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=51.86 E-value=12 Score=31.30 Aligned_cols=82 Identities=21% Similarity=0.274 Sum_probs=13.7
Q ss_pred EEEEEeecCCCCCeEEEEEEeCCCCce-eeeeeEEEEcCCCC---Cccc--c--------eeccCCcceeecCCCceEEE
Q psy14540 62 SHVNISSVRVEDSGIYQCTATNRVGSQ-THSADMRVYDAPGQ---PQDV--K--------LVTSNSRSIKVHSGDRAGVQ 127 (291)
Q Consensus 62 ~~l~i~~~~~~d~G~y~C~~~~~~~~~-~~~~~l~v~~~~~~---~~~~--~--------~~~~~~~~~~~~~g~~~~l~ 127 (291)
..|.|.+++.+|+|.|+-.+.+..+.. ...+.+.|...... |.+. . .............|+++.+.
T Consensus 89 ~~l~i~~a~~~~~GvY~l~~~~~~~~~~~~~~~v~v~~~~~~~~~p~p~~p~~p~~~~~~~~~~~~~s~vf~~Gdtf~~~ 168 (439)
T PF02480_consen 89 GGLSILNATEQDSGVYTLYVRNDSGWAHQSVVFVTVKGPAPDPRTPPPHHPIVPHRHGATFHLKNYHSHVFSPGDTFHLS 168 (439)
T ss_dssp ---------------------------------------------------------SEEEEEE--SEEE--TT--EE--
T ss_pred CceEEeccccccCeeEEEEecCCCCceEEEEEEEEEcCCCcCCCCCCCCCCCCCcccccEEEEeccceEEecCCCcEEEe
Confidence 458999999999999999987555443 22344555443222 1110 0 11123333555688888876
Q ss_pred EEeeCCC---C--CceeEEeE
Q psy14540 128 CLVTKGD---P--PLTISWLK 143 (291)
Q Consensus 128 C~~~~~~---p--~~~~~W~~ 143 (291)
-...... + ...+.|+.
T Consensus 169 v~l~~~~~d~~~f~~~i~W~~ 189 (439)
T PF02480_consen 169 VHLQSEAHDDPPFSLEIDWYY 189 (439)
T ss_dssp -EEEEEESSS--EEEEEEEEE
T ss_pred EEEEeccCCCCCeeEEEEEEE
Confidence 6553211 1 34789987
No 433
>PHA03189 UL14 tegument protein; Provisional
Probab=51.41 E-value=1.2e+02 Score=23.90 Aligned_cols=25 Identities=28% Similarity=0.368 Sum_probs=16.9
Q ss_pred eeecCCCeeEEEEeeeCC-ccCCcee
Q psy14540 209 TLSTGHSGNYTCVASNTV-ASDNHSS 233 (291)
Q Consensus 209 ~~~~~~~g~y~C~~~~~~-~~~~~~~ 233 (291)
.+..+.+|.|.|...|.. +-....+
T Consensus 139 ~v~t~taG~Y~CvLrN~tHglv~~rf 164 (348)
T PHA03189 139 RVSTSTAGMYECVLRNETHGLVLQRF 164 (348)
T ss_pred EEEecccceEEEEeccccceeeeEEe
Confidence 445678899999998876 4333333
No 434
>PHA02935 Hypothetical protein; Provisional
Probab=50.93 E-value=72 Score=23.06 Aligned_cols=56 Identities=29% Similarity=0.420 Sum_probs=31.8
Q ss_pred CCeeEEEECCeecC---CCeeE--eceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCC
Q psy14540 31 TPHISWKLDGYPLA---GDRFV--MGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVG 86 (291)
Q Consensus 31 ~~~v~W~~~~~~~~---~~~~~--~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~ 86 (291)
.....||.+++.+. .++.. +..+.........-|.|..++.+|+|.|.-...-..|
T Consensus 66 inytswyyndkvialatedrtsgyissfikrvnisltclnisslryedsgsykgvshlkdg 126 (349)
T PHA02935 66 INYTSWYYNDKVIALATEDRTSGYISSFIKRVNISLTCLNISSLRYEDSGSYKGVSHLKDG 126 (349)
T ss_pred cccceeeecCEEEEEeeccccccHHHHHHhhheeeEEEeeccceeeccCCcccCchhhcCc
Confidence 34478999988764 11111 1111111112224477888999999999876654444
No 435
>PHA03286 envelope glycoprotein E; Provisional
Probab=50.88 E-value=1.5e+02 Score=24.90 Aligned_cols=28 Identities=7% Similarity=0.019 Sum_probs=18.7
Q ss_pred ccCCceEEEEEEeecCC----CCceEEEEECC
Q psy14540 251 LMEGVRTQVACVVQSGD----LPLSLQWYKNG 278 (291)
Q Consensus 251 ~~~g~~v~l~C~~~~~~----p~~~v~W~~~~ 278 (291)
...|+++.+.-...... -..+|.|+.-.
T Consensus 196 F~~GDTF~vSv~l~~~~~d~~Fsl~i~W~y~p 227 (492)
T PHA03286 196 YNVGDTVDASVTAHLTNWAGAFSLEFRVLFLP 227 (492)
T ss_pred ecCCCeEEEEEEEeecccCCCceEEEEEEEec
Confidence 57899988777663222 23589999753
No 436
>PF01688 Herpes_gI: Alphaherpesvirus glycoprotein I; InterPro: IPR002874 This family consists of glycoprotein I from various members of the alphaherpesvirinae. These include Human herpesvirus 1 (HHV-1), Human herpesvirus 3 (HHV-3) and Suid herpesvirus 1 (Pseudorabies virus). Glycoprotein I (gI) is important during natural infection, mutants lacking gI produce smaller lesions at the site of infection and show reduced neuronal spread []. gI forms a heterodimeric complex with gE; this complex displays Fc receptor activity (binds to the Fc region of immunoglobulin) []. Glycoproteins are also important in the production of virus-neutralizing antibodies and cell mediated immunity []. The alphaherpesviridae have a dsDNA genome and have no RNA stage during viral replication.; GO: 0033643 host cell part
Probab=49.28 E-value=47 Score=23.31 Aligned_cols=24 Identities=33% Similarity=0.286 Sum_probs=20.3
Q ss_pred EEEEEeecCCCCCeEEEEEEeCCC
Q psy14540 62 SHVNISSVRVEDSGIYQCTATNRV 85 (291)
Q Consensus 62 ~~l~i~~~~~~d~G~y~C~~~~~~ 85 (291)
.-|.|.+.+.+|+|.|.-++.-+.
T Consensus 124 ~lL~i~~p~~~dsG~Y~lRV~l~~ 147 (161)
T PF01688_consen 124 VLLRIRNPRPEDSGIYYLRVWLDG 147 (161)
T ss_pred eEEEeCCCCcccceEEEEEEEECC
Confidence 558999999999999999887443
No 437
>PF00801 PKD: PKD domain; InterPro: IPR000601 The PKD (Polycystic Kidney Disease) domain was first identified in the Polycystic Kidney Disease protein, polycystin-1 (PDK1 gene), and contains an Ig-like fold consisting of a beta-sandwich of seven strands in two sheets with a Greek key topology, although some members have additional strands []. Polycystin-1 is a large cell-surface glycoprotein involved in adhesive protein-protein and protein-carbohydrate interactions; however it is not clear if the PKD domain mediates any of these interactions. PKD domains are also found in other proteins, usually in the extracellular parts of proteins involved in interactions with other proteins. For example, domains with a PKD-type fold are found in archaeal surface layer proteins that protect the cell from extreme environments [], and in the human VPS10 domain-containing receptor SorCS2 [].; PDB: 1B4R_A 2KZW_A 2C4X_A 2C26_A 2Y72_B 3JQU_A 3JS7_B 1WGO_A 1L0Q_A.
Probab=47.65 E-value=53 Score=18.79 Aligned_cols=29 Identities=21% Similarity=0.297 Sum_probs=21.1
Q ss_pred eeecCCCceEEEEEeeCCCCCceeEEeECC
Q psy14540 116 IKVHSGDRAGVQCLVTKGDPPLTISWLKNG 145 (291)
Q Consensus 116 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~ 145 (291)
..+..|+.+.|.... .......+.|..++
T Consensus 6 ~~~~~g~~v~f~~~~-~~g~~~~y~W~fgd 34 (69)
T PF00801_consen 6 TYVPTGQPVTFTASS-SDGSPVTYSWDFGD 34 (69)
T ss_dssp SCEBTTSEEEEEETT-TTSSECEEEEE-SS
T ss_pred CEEcCCCEEEEEEEc-cCCCCeEEEEEECC
Confidence 356688999999887 34445689999887
No 438
>PF02440 Adeno_E3_CR1: Adenovirus E3 region protein CR1; InterPro: IPR003471 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D virus) 49 Kd protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=45.98 E-value=57 Score=18.69 Aligned_cols=21 Identities=29% Similarity=0.612 Sum_probs=15.1
Q ss_pred eecCCcEEEEEEecCCCCCeeEEEE
Q psy14540 14 LQPGPPVSLKCIATGNPTPHISWKL 38 (291)
Q Consensus 14 v~~g~~v~l~C~~~~~~~~~v~W~~ 38 (291)
|..|+.++|. +.+...++|++
T Consensus 2 v~~G~N~TL~----Gp~~~~V~Wy~ 22 (63)
T PF02440_consen 2 VTVGSNVTLV----GPPDGPVTWYK 22 (63)
T ss_pred EeEcCcEEEe----CCCCCceEEEE
Confidence 5678888874 44556699994
No 439
>PF11049 KSHV_K1: Glycoprotein K1 of Kaposi's sarcoma-associated herpes virus; InterPro: IPR021022 This is a highly glycosylated cytoplasmic and membrane protein similar to the immunoglobulin receptor family that is expressed as an inducible early-lytic-cycle gene product in primary effusion lymphoma cell-lines. This domain would appear to be the cytoplasmic region of the protein [].
Probab=45.82 E-value=15 Score=20.99 Aligned_cols=21 Identities=29% Similarity=0.806 Sum_probs=14.3
Q ss_pred EEEEEeecCCCCceEEEEECCEEc
Q psy14540 258 QVACVVQSGDLPLSLQWYKNGLAI 281 (291)
Q Consensus 258 ~l~C~~~~~~p~~~v~W~~~~~~l 281 (291)
+|+|.. .. ..-+.||-||..|
T Consensus 2 tltC~s-~~--sLPiswYcN~TRL 22 (71)
T PF11049_consen 2 TLTCPS-NA--SLPISWYCNGTRL 22 (71)
T ss_pred ceecCC-CC--CCcccEEECCcee
Confidence 578865 32 2338899998866
No 440
>PF10430 Ig_Tie2_1: Tie-2 Ig-like domain 1; InterPro: IPR018941 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. Angiogenesis is a physiological process whereby new blood vessels are formed from existing ones. It is essential for tissue repair and regeneration during wound healing but also plays important roles in many pathological processes including tumor growth and metastasis [, ]. Angiogenesis is regulated in part by the receptor protein tyrosine kinase Tie2 and its ligands, the angiopoietins. The angiopoietin-binding site is harbord by the N-terminal two immunoglobulin-like (Ig-like) domains of Tie2 []. The angiopoietin-1 receptor contains the Tie-2 Ig-like domain. This protein is a tyrosine-kinase transmembrane receptor for angiopoietin 1. It probably regulates endothelial cell proliferation, differentiation and guides the proper patterning of endothelial cells during blood vessel formation. Tie2 contains not two but three immunoglobulin domains. They fold together with the three epidermal growth factor domains to form a compact, arrowhead-shaped structure [].; GO: 0004714 transmembrane receptor protein tyrosine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation, 0007169 transmembrane receptor protein tyrosine kinase signaling pathway, 0005887 integral to plasma membrane; PDB: 2GY7_B 2GY5_A.
Probab=39.39 E-value=93 Score=19.22 Aligned_cols=75 Identities=17% Similarity=0.179 Sum_probs=27.3
Q ss_pred eeecceeeeecCCcEEEEEEecC-CCCCeeEEEECCeecCCCeeEeceEEeeccc-eEEEEEEeecCCCC-CeEEEEEEe
Q psy14540 6 IYKFIQQTLQPGPPVSLKCIATG-NPTPHISWKLDGYPLAGDRFVMGQYMSLHGD-VISHVNISSVRVED-SGIYQCTAT 82 (291)
Q Consensus 6 ~~~~~~~~v~~g~~v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d-~G~y~C~~~ 82 (291)
++++.+ +.......|.|...+ .+.-.+.--++-..+.+.............. .........-+.+. .|.|.|+..
T Consensus 6 liNs~P--lvs~~etSL~Ci~s~W~s~esitigrd~~~~~nqh~~plEv~~de~R~~ak~vvwkrekas~~~GayyCegk 83 (96)
T PF10430_consen 6 LINSLP--LVSNSETSLTCIASDWSSHESITIGRDFEALMNQHQEPLEVPQDETRPHAKKVVWKREKASEAIGAYYCEGK 83 (96)
T ss_dssp EEEC-S--EE-SS-EEEEEEE-SS--SS--EEEE-TTTSTT-------EEEETTSSSEEEEEE-TTT-SS--EEEEEEEE
T ss_pred EecCcc--ccccCceeEEEEecCCcCCCcEEecccchhhhhcccCCcccccCCCCcccceEEEEeeccccccceEEEEEE
Confidence 344433 444455599999886 3444455544432222111111000111111 11223333333333 599999986
No 441
>PF01688 Herpes_gI: Alphaherpesvirus glycoprotein I; InterPro: IPR002874 This family consists of glycoprotein I from various members of the alphaherpesvirinae. These include Human herpesvirus 1 (HHV-1), Human herpesvirus 3 (HHV-3) and Suid herpesvirus 1 (Pseudorabies virus). Glycoprotein I (gI) is important during natural infection, mutants lacking gI produce smaller lesions at the site of infection and show reduced neuronal spread []. gI forms a heterodimeric complex with gE; this complex displays Fc receptor activity (binds to the Fc region of immunoglobulin) []. Glycoproteins are also important in the production of virus-neutralizing antibodies and cell mediated immunity []. The alphaherpesviridae have a dsDNA genome and have no RNA stage during viral replication.; GO: 0033643 host cell part
Probab=36.89 E-value=92 Score=21.94 Aligned_cols=25 Identities=24% Similarity=0.044 Sum_probs=15.7
Q ss_pred EEEEEeeCCCCCceeEEEEEEecCC
Q psy14540 164 SSLSIATLSTGHSGNYTCVASNTVA 188 (291)
Q Consensus 164 ~~l~i~~~~~~d~g~y~C~~~~~~~ 188 (291)
.-|.|.+.+.+|+|.|..++.-...
T Consensus 124 ~lL~i~~p~~~dsG~Y~lRV~l~~~ 148 (161)
T PF01688_consen 124 VLLRIRNPRPEDSGIYYLRVWLDGA 148 (161)
T ss_pred eEEEeCCCCcccceEEEEEEEECCC
Confidence 3467777777777777666655443
No 442
>PHA03281 envelope glycoprotein E; Provisional
Probab=35.38 E-value=3e+02 Score=23.93 Aligned_cols=83 Identities=12% Similarity=0.144 Sum_probs=48.4
Q ss_pred EEEEEeecCCCCCeEEEEEEeCCCCceee-eeeEEEEcCC--CCCccccee--------ccCCcceeecCCCceEEEEEe
Q psy14540 62 SHVNISSVRVEDSGIYQCTATNRVGSQTH-SADMRVYDAP--GQPQDVKLV--------TSNSRSIKVHSGDRAGVQCLV 130 (291)
Q Consensus 62 ~~l~i~~~~~~d~G~y~C~~~~~~~~~~~-~~~l~v~~~~--~~~~~~~~~--------~~~~~~~~~~~g~~~~l~C~~ 130 (291)
..|.|.+++.+++|.|+-..+...|.... .+.++|...+ ..|.+...+ ..........+|+++.+.-..
T Consensus 298 ~vL~I~nAT~~naGVYtly~rg~~G~s~~svfLVtVkg~~~~rip~p~Vtpk~hga~F~vknYhShVF~pGDTFsl~v~L 377 (642)
T PHA03281 298 GVLKFEHMEAHHAGVYIWNLQGSDGENMYATFLVKLKGDEENHIDLPAVTPKPKGAEFHMWHYHSHVFSVGDTFSLAMHL 377 (642)
T ss_pred CeeEEEecccccceeEEEEecCCCCcceeEEEEEEecCCcccCCCCCCccccccCceEEEeccceeEecCCCeeEEEEEE
Confidence 46899999999999999888755453333 4455665432 111111111 112223445589988887765
Q ss_pred eCC---CC-CceeEEeEC
Q psy14540 131 TKG---DP-PLTISWLKN 144 (291)
Q Consensus 131 ~~~---~p-~~~~~W~~~ 144 (291)
..- .| ...+.|+.-
T Consensus 378 ~s~ihD~pFsleI~Wyy~ 395 (642)
T PHA03281 378 QYKIHDAPFDLLLEWLYV 395 (642)
T ss_pred eeeccCCCceeEEEEEEe
Confidence 321 11 347999873
No 443
>PHA03282 envelope glycoprotein E; Provisional
Probab=34.96 E-value=1e+02 Score=26.00 Aligned_cols=29 Identities=7% Similarity=0.291 Sum_probs=19.2
Q ss_pred ccCCceEEEEEEeec-CC----CCceEEEEECCE
Q psy14540 251 LMEGVRTQVACVVQS-GD----LPLSLQWYKNGL 279 (291)
Q Consensus 251 ~~~g~~v~l~C~~~~-~~----p~~~v~W~~~~~ 279 (291)
...|+++.+.-.+.. +. -..+|.|++-..
T Consensus 225 FspGDTF~lsVsI~s~ahdd~pFs~eV~Wyy~~v 258 (540)
T PHA03282 225 FSPGDTVHTNVSIHPIAHDDDPYVMEVVWVRFDV 258 (540)
T ss_pred ecCCCeeeeeeEEEecccCCCCceeEEEEEecCC
Confidence 467888888887742 12 235899997543
No 444
>PRK14081 triple tyrosine motif-containing protein; Provisional
Probab=34.61 E-value=3.5e+02 Score=24.44 Aligned_cols=106 Identities=15% Similarity=0.225 Sum_probs=58.9
Q ss_pred eeeecCCcEEEEEEecCCCCCeeE-E-EECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeC--CCC-
Q psy14540 12 QTLQPGPPVSLKCIATGNPTPHIS-W-KLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATN--RVG- 86 (291)
Q Consensus 12 ~~v~~g~~v~l~C~~~~~~~~~v~-W-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~--~~~- 86 (291)
..+..|+.+.+.|.+.+.....+. | .++|..+....+... ..+ +.++.-+|.|+-.+.- ...
T Consensus 396 ~~~lvG~~i~i~v~a~gg~~~lY~f~ik~ng~~ve~~~Y~~~----------~~~---~f~P~~~G~Y~IeV~vKdk~S~ 462 (667)
T PRK14081 396 KHILKGEEIKIRVIAEGGTNLRYSFIIKKDGKEEEKIDYGKN----------NWV---NFIPEEKGNYELEVRVKDKYSD 462 (667)
T ss_pred CceEeCCeEEEEEEecCCCeEEEEEEEEECCEEEEEeecccc----------cEE---EEEECCCeeEEEEEEEecccCc
Confidence 457789999999999874444433 2 347766552222111 112 2345678999988762 211
Q ss_pred ---ceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCC
Q psy14540 87 ---SQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKG 133 (291)
Q Consensus 87 ---~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~ 133 (291)
.....+.+.|.... |......+. +.......|+.+++.|.+.++
T Consensus 463 ~~yD~~k~v~l~V~e~~--P~~i~~il~-~~~~~~~vg~~i~~~~~~~~~ 509 (667)
T PRK14081 463 KEYDAHTIVYIKVHEYI--PAEIDYILL-PVKEYYLVGDDIEIEVIIQNT 509 (667)
T ss_pred hhcccceEEEEEEeccC--ceeeeeEEe-cccccEEeCCEEEEEEEEeCC
Confidence 23455666666432 211111111 222335679999999998544
No 445
>smart00089 PKD Repeats in polycystic kidney disease 1 (PKD1) and other proteins. Polycystic kidney disease 1 protein contains 14 repeats, present elsewhere such as in microbial collagenases.
Probab=33.78 E-value=1e+02 Score=18.05 Aligned_cols=28 Identities=11% Similarity=0.316 Sum_probs=19.0
Q ss_pred eeecCCcEEEEEEecC-CCCCeeEEEECC
Q psy14540 13 TLQPGPPVSLKCIATG-NPTPHISWKLDG 40 (291)
Q Consensus 13 ~v~~g~~v~l~C~~~~-~~~~~v~W~~~~ 40 (291)
....|+.+.|.....+ .....+.|...+
T Consensus 10 ~~~~~~~v~f~~~~~~~~~~~~~~W~fgd 38 (79)
T smart00089 10 VGVAGESVTFTATSSDDGSIVSYTWDFGD 38 (79)
T ss_pred CCCCCCEEEEEEECCCCCCeEEEEEEeCC
Confidence 3447888999887654 345668887644
No 446
>PF02010 REJ: REJ domain; InterPro: IPR002859 The REJ (Receptor for Egg Jelly) domain is found in PKD1 P98161 from SWISSPROT and the sperm receptor for egg jelly Q26627 from SWISSPROT. The exact function of this domain is unknown. The domain is 600 amino acids long so is probably composed of multiple structural domains. There are six completely conserved cysteine residues that may form disulphide bridges. This region contains tandem PKD-like domains. Sequence similarity between a region of the autosomal dominant polycystic kidney disease (ADPKD) protein, polycystin-1 and a sea urchin sperm glycoprotein involved in fertilization, the receptor for egg jelly (suREJ) has been known for some time. The suREJ protein binds the glycoprotein coat of the egg (egg jelly), triggering the acrosome reaction, which transforms the sperm into a fusogenic cell. The sequence similarity and expression pattern suggests that the predicted human PKDREJ protein is a mammalian equivalent of the suREJ protein and therefore may have a central role in human fertilization [].; PDB: 2E7M_A 2YRL_A.
Probab=33.62 E-value=14 Score=30.90 Aligned_cols=46 Identities=24% Similarity=0.311 Sum_probs=0.0
Q ss_pred CceeEEEEecCCC---CCCCCcccccCCceEEEEEEeecCCC--CceEEEEE
Q psy14540 230 NHSSNLRVNVPPH---IGPFTFGELMEGVRTQVACVVQSGDL--PLSLQWYK 276 (291)
Q Consensus 230 ~~~~~l~v~~~p~---~~~~~~~~~~~g~~v~l~C~~~~~~p--~~~v~W~~ 276 (291)
..++.+.+..+|. ....+..-......+++.|.- ..+. +..|.|+.
T Consensus 290 ~a~~~~~~n~pP~~g~c~v~P~~G~al~T~Ft~~c~~-~~d~~~pL~Y~f~~ 340 (440)
T PF02010_consen 290 SASISFTVNAPPSGGSCSVSPSSGYALETTFTITCSG-WTDDDQPLTYQFYY 340 (440)
T ss_dssp ----------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccc-cccccccccccccc
Confidence 5566677776663 333333335566788999975 3222 34777776
No 447
>PHA03290 envelope glycoprotein I; Provisional
Probab=31.62 E-value=1.2e+02 Score=24.18 Aligned_cols=25 Identities=24% Similarity=0.279 Sum_probs=20.9
Q ss_pred EEEEEeecCCCCCeEEEEEEeCCCC
Q psy14540 62 SHVNISSVRVEDSGIYQCTATNRVG 86 (291)
Q Consensus 62 ~~l~i~~~~~~d~G~y~C~~~~~~~ 86 (291)
..|.|.+.+.+|+|.|.-++.-...
T Consensus 129 vLL~I~~P~~~DSGiY~LRV~Ldga 153 (357)
T PHA03290 129 IIFKINKPGIEDAGIYLLLVQLDHS 153 (357)
T ss_pred eEEEeCCCCcccCeeEEEEEEeCCC
Confidence 5689999999999999999884433
No 448
>smart00635 BID_2 Bacterial Ig-like domain 2.
Probab=31.15 E-value=1.2e+02 Score=18.11 Aligned_cols=39 Identities=13% Similarity=0.251 Sum_probs=28.7
Q ss_pred cceeecceeeeecCCcEEEEEEecCCC---CCeeEEEECCee
Q psy14540 4 QLIYKFIQQTLQPGPPVSLKCIATGNP---TPHISWKLDGYP 42 (291)
Q Consensus 4 ~~~~~~~~~~v~~g~~v~l~C~~~~~~---~~~v~W~~~~~~ 42 (291)
.|.+.|....+..|+...|...+.... ...+.|.-.+..
T Consensus 4 ~i~i~p~~~~l~~G~~~~l~a~~~~~~~~~~~~v~w~Ssn~~ 45 (81)
T smart00635 4 SVTVTPTTASVKKGLTLQLTATVTPSSAKVTGKVTWTSSNPS 45 (81)
T ss_pred EEEEeCCeeEEeCCCeEEEEEEEECCCCCccceEEEEECCCc
Confidence 466778888899999999998865422 346889876543
No 449
>PF08239 SH3_3: Bacterial SH3 domain; InterPro: IPR013247 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. A homologue of the SH3 domain has been found in a number of different bacterial proteins including glycyl-glycine endopeptidase, bacteriocin and some hypothetical proteins.; PDB: 3PVQ_B 3NPF_B 3H41_A 2KQ8_A 2KRS_A 2KYB_A 2KT8_A.
Probab=30.17 E-value=95 Score=16.60 Aligned_cols=29 Identities=24% Similarity=0.300 Sum_probs=20.1
Q ss_pred EEEecCCCCCCCCcccccCCceEEEEEEe
Q psy14540 235 LRVNVPPHIGPFTFGELMEGVRTQVACVV 263 (291)
Q Consensus 235 l~v~~~p~~~~~~~~~~~~g~~v~l~C~~ 263 (291)
+.++..|...-.....+..|+.+.+.+..
T Consensus 3 ~nvR~~p~~~s~~i~~l~~g~~v~v~~~~ 31 (55)
T PF08239_consen 3 LNVRSGPSTNSPVIGQLPKGEKVTVLGES 31 (55)
T ss_dssp EEEESSSSTTSTEEEEEETTSEEEEEEEE
T ss_pred EEEEeCCCCCChhhEEEeCCCEEEEEEEc
Confidence 45566665553333348999999999987
No 450
>PF13220 DUF4028: Protein of unknown function (DUF4028)
Probab=30.00 E-value=58 Score=17.62 Aligned_cols=16 Identities=19% Similarity=0.453 Sum_probs=10.0
Q ss_pred CCceeEEEEEEecCCC
Q psy14540 174 GHSGNYTCVASNTVAS 189 (291)
Q Consensus 174 ~d~g~y~C~~~~~~~~ 189 (291)
+.+..|.|.+.|..|.
T Consensus 8 dssnsflctvqnkng~ 23 (65)
T PF13220_consen 8 DSSNSFLCTVQNKNGD 23 (65)
T ss_pred cCCCceEEEEecccHh
Confidence 4455677777776653
No 451
>PF03174 CHB_HEX_C: Chitobiase/beta-hexosaminidase C-terminal domain; InterPro: IPR004867 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This short domain is found in members of the glycoside hydrolase family 20 (GH20 from CAZY) and represents the C-terminal domain in chitobiases and beta-hexosaminidases 3.2.1.52 from EC. It is composed of a beta sandwich structure []. The function of this domain is unknown. ; GO: 0004563 beta-N-acetylhexosaminidase activity, 0005975 carbohydrate metabolic process; PDB: 1C7T_A 1QBA_A 1QBB_A 1C7S_A.
Probab=27.31 E-value=1.4e+02 Score=17.54 Aligned_cols=34 Identities=26% Similarity=0.305 Sum_probs=18.4
Q ss_pred eeecceeeeecCCcEEEEEEecCCCCCeeEEEECCee
Q psy14540 6 IYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYP 42 (291)
Q Consensus 6 ~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~ 42 (291)
...|.......+..|.|.|. .+...|.+..||..
T Consensus 4 ~~sp~~G~~~~~~~v~l~~~---~~~~~I~YT~DGs~ 37 (75)
T PF03174_consen 4 TASPPSGTYDEGQTVTLSSD---TPGATIYYTLDGSE 37 (75)
T ss_dssp ------EEEEETTEEEEE-S---STTSEEEEESSSSS
T ss_pred EEeCCCCcEecCeEEEEEeC---CCCCEEEEEcCCCc
Confidence 33444556777889999983 33446777777654
No 452
>PHA03289 envelope glycoprotein I; Provisional
Probab=26.76 E-value=1.7e+02 Score=23.32 Aligned_cols=25 Identities=24% Similarity=0.278 Sum_probs=20.8
Q ss_pred EEEEEeecCCCCCeEEEEEEeCCCC
Q psy14540 62 SHVNISSVRVEDSGIYQCTATNRVG 86 (291)
Q Consensus 62 ~~l~i~~~~~~d~G~y~C~~~~~~~ 86 (291)
.-|.|.+.+.+|+|.|.-++.-...
T Consensus 122 vLL~I~~Pr~~DSGiYyLRV~Ldga 146 (352)
T PHA03289 122 LLLTIIEPRMSDTGIYYIRVSLAGR 146 (352)
T ss_pred eEEEeCCCCcccCeeEEEEEEeCCC
Confidence 4689999999999999999884433
No 453
>PF03628 PapG_C: PapG chaperone-binding domain ; InterPro: IPR005309 PapG, the adhesin of the P-pili, is situated at the tip and is only a minor component of the whole pilus structure. A two-domain structure has been postulated for PapG; a carbohydrate binding N terminus and chaperone binding C terminus (this domain). The chaperone-binding domain is highly conserved, and is essential for the correct assembly of the pili structure when aided by the chaperone molecule PapD [, ].; PDB: 2WMP_B 3ME0_B.
Probab=26.07 E-value=1.9e+02 Score=18.62 Aligned_cols=51 Identities=24% Similarity=0.349 Sum_probs=30.2
Q ss_pred CCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCC
Q psy14540 121 GDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTG 174 (291)
Q Consensus 121 g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~ 174 (291)
-+.+++.|.+. ....+..+++..+.....++.......+.+.+.+..+...
T Consensus 15 ~~titvtC~~P---~nvk~~L~s~s~P~~s~~~~sv~LGnGWDsiisinG~~~~ 65 (108)
T PF03628_consen 15 AQTITVTCTVP---VNVKISLLSNSTPNYSNQGFSVGLGNGWDSIISINGVKQS 65 (108)
T ss_dssp EEEEEEEESS----EEEEEEEEESS--SS--TS-EEEEETTEEEEEEETTB-SS
T ss_pred eeEEEEEecCC---ccEEEEEEccCCCccccCceEeccCCCeeEEEEECCcccc
Confidence 35678999762 2347888888888877777766666666666766655443
No 454
>PHA03290 envelope glycoprotein I; Provisional
Probab=25.81 E-value=1.7e+02 Score=23.43 Aligned_cols=28 Identities=11% Similarity=0.040 Sum_probs=20.1
Q ss_pred eEEEEEeeCCCCCceeEEEEEEecCCCC
Q psy14540 163 TSSLSIATLSTGHSGNYTCVASNTVASD 190 (291)
Q Consensus 163 ~~~l~i~~~~~~d~g~y~C~~~~~~~~~ 190 (291)
...|.+.....+|+|.|..++.-.....
T Consensus 128 ~vLL~I~~P~~~DSGiY~LRV~Ldga~~ 155 (357)
T PHA03290 128 EIIFKINKPGIEDAGIYLLLVQLDHSRL 155 (357)
T ss_pred ceEEEeCCCCcccCeeEEEEEEeCCCcc
Confidence 4458888888888888887776655443
No 455
>PHA03292 envelope glycoprotein I; Provisional
Probab=25.76 E-value=1.6e+02 Score=24.07 Aligned_cols=24 Identities=25% Similarity=0.256 Sum_probs=20.5
Q ss_pred EEEEEeecCCCCCeEEEEEEeCCC
Q psy14540 62 SHVNISSVRVEDSGIYQCTATNRV 85 (291)
Q Consensus 62 ~~l~i~~~~~~d~G~y~C~~~~~~ 85 (291)
.-|.|.+.+.+|+|.|.-++.-+.
T Consensus 128 vLL~I~~P~~~DSGiY~LRV~Ldg 151 (413)
T PHA03292 128 VLLNITGPQPADSGAYILRVKLDH 151 (413)
T ss_pred eEEEeCCCCcccceeEEEEEEeCC
Confidence 558899999999999999988443
No 456
>KOG3265|consensus
Probab=23.10 E-value=1.2e+02 Score=22.72 Aligned_cols=26 Identities=15% Similarity=0.326 Sum_probs=19.5
Q ss_pred cCCc-EEEEEEecCCCCCeeEEEECCe
Q psy14540 16 PGPP-VSLKCIATGNPTPHISWKLDGY 41 (291)
Q Consensus 16 ~g~~-v~l~C~~~~~~~~~v~W~~~~~ 41 (291)
.|-+ +.|+|++.+..-.++-||.+..
T Consensus 90 vGVTviLltC~Y~gQEFIRvGYyVnNe 116 (250)
T KOG3265|consen 90 VGVTVILLTCSYRGQEFIRVGYYVNNE 116 (250)
T ss_pred eeeEEEEEEEEEcCceeEEEEEEecCC
Confidence 3434 5579999998888899998653
No 457
>KOG0200|consensus
Probab=22.39 E-value=2.9e+02 Score=24.67 Aligned_cols=23 Identities=39% Similarity=0.612 Sum_probs=19.2
Q ss_pred ceEEEEeeeecCCCeeEEEEeee
Q psy14540 202 TSSLSIATLSTGHSGNYTCVASN 224 (291)
Q Consensus 202 ~~~l~i~~~~~~~~g~y~C~~~~ 224 (291)
...+.+..+...+.|.|+|.+.+
T Consensus 12 ~~~~~~~~~~~~~~~~y~~~~~~ 34 (609)
T KOG0200|consen 12 HWFLIIDSVVPGDKGFYTCLVSN 34 (609)
T ss_pred cceEEEEEEEecCCccEEEEEec
Confidence 45677888888899999999888
No 458
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=22.25 E-value=54 Score=27.58 Aligned_cols=21 Identities=14% Similarity=0.276 Sum_probs=15.8
Q ss_pred EEEeecCCCCCeEEEEEEeCC
Q psy14540 64 VNISSVRVEDSGIYQCTATNR 84 (291)
Q Consensus 64 l~i~~~~~~d~G~y~C~~~~~ 84 (291)
|++.|+...++|.|-|.+..+
T Consensus 271 l~f~~a~~~~sGLYv~V~~~n 291 (439)
T PF02480_consen 271 LQFTNAPESASGLYVFVVYYN 291 (439)
T ss_dssp EEESS--GGG-EEEEEEEEET
T ss_pred eEecCCCcccCceEEEEEEEC
Confidence 889999999999999998743
No 459
>PF11327 DUF3129: Protein of unknown function (DUF3129); InterPro: IPR021476 This eukaryotic family of proteins has no known function.
Probab=22.16 E-value=3.1e+02 Score=19.91 Aligned_cols=26 Identities=15% Similarity=0.351 Sum_probs=20.0
Q ss_pred ceEEEEEEeecCCCCCeEEEEEEeCC
Q psy14540 59 DVISHVNISSVRVEDSGIYQCTATNR 84 (291)
Q Consensus 59 ~~~~~l~i~~~~~~d~G~y~C~~~~~ 84 (291)
.+.-.+++..+..+-+|.|+|.+...
T Consensus 90 gG~i~mt~hQVN~DGaGP~~C~iD~t 115 (184)
T PF11327_consen 90 GGSISMTIHQVNADGAGPFTCDIDET 115 (184)
T ss_pred CCEEEEEEEEecCCCCcCeEEEECCC
Confidence 34456778888887799999999743
No 460
>PHA03291 envelope glycoprotein I; Provisional
Probab=20.82 E-value=2.4e+02 Score=22.88 Aligned_cols=36 Identities=6% Similarity=-0.011 Sum_probs=25.2
Q ss_pred EEEEEeecCCCCCeEEEEEEeCCCCceeeeeeEEEE
Q psy14540 62 SHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVY 97 (291)
Q Consensus 62 ~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~l~v~ 97 (291)
-.|.|.+...+|+|.|.-++.-+......-+.+.+.
T Consensus 129 vLL~i~~P~~~DsGiYvLRV~vdgat~adlF~lg~~ 164 (401)
T PHA03291 129 PLLRARGAARAVVGLYVLRVWVEGATNASLFPLGLA 164 (401)
T ss_pred eEEEecCCCcccceeEEEEEEeCCCcccceEEEeee
Confidence 458899999999999999988544433333344443
No 461
>PF01333 Apocytochr_F_C: Apocytochrome F, C-terminal; InterPro: IPR002325 The cytochrome b6f integral membrane protein complex transfers electrons between the two reaction centre complexes of oxygenic photosynthetic membranes, and participates in formation of the transmembrane electrochemical proton gradient by also transferring protons from the stromal to the internal lumen compartment []. The cytochrome b6f complex contains four polypeptides: cytochrome f (285 aa); cytochrome b6 (215 aa); Rieske iron-sulphur protein (179 aa); and subunit IV (160 aa) []. In its structure and functions, the cytochrome b6f complex bears extensive analogy to the cytochrome bc1 complex of mitochondria and photosynthetic purple bacteria; cytochrome f (cyt f) plays a role analogous to that of cytochrome c1, in spite of their different structures [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding, 0015979 photosynthesis, 0031361 integral to thylakoid membrane; PDB: 2E75_C 2E74_C 1VF5_P 2D2C_P 2E76_C 1TU2_B 2ZT9_C 1E2V_A 1CFM_A 1E2W_B ....
Probab=20.39 E-value=2.3e+02 Score=18.65 Aligned_cols=58 Identities=10% Similarity=0.062 Sum_probs=30.5
Q ss_pred EEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCCCCCCCCcccccCCceEEEEEEeecCC
Q psy14540 206 SIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGPFTFGELMEGVRTQVACVVQSGD 267 (291)
Q Consensus 206 ~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~g~~v~l~C~~~~~~ 267 (291)
.|..+...+.|.|.-......| ..+.-.+...|.+.+.....+..|+.++-.=.+ +|+
T Consensus 12 ~I~~I~~~ekgg~~vtI~~~dG---~~v~~~IP~GpeLiV~eG~~V~~dqpLT~nPNV-GGF 69 (118)
T PF01333_consen 12 TITKITRKEKGGYEVTIETSDG---ETVVETIPAGPELIVSEGQSVKADQPLTNNPNV-GGF 69 (118)
T ss_dssp EEEEEEEETTSEEEEEEETTTS---EEEEEEEESSS-BS--TT-EETTT-BSB-------EE
T ss_pred EEEEEEEcCCCCEEEEEECCCC---CEEEEecCCCCeEEEcCCCEEecCCcccCCCCc-Ccc
Confidence 4556666677888877754443 344455667788887777777777777665555 443
Done!