Query psy14540
Match_columns 291
No_of_seqs 251 out of 1783
Neff 12.0
Searched_HMMs 29240
Date Fri Aug 16 22:32:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14540.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14540hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b43_A Titin; I-SET IG fold, e 100.0 1.1E-39 3.6E-44 273.7 28.0 266 2-281 197-518 (570)
2 3b43_A Titin; I-SET IG fold, e 100.0 2.4E-39 8.4E-44 271.5 28.9 271 2-284 101-428 (570)
3 2rik_A Titin; I-SET IG fold, p 100.0 4.4E-36 1.5E-40 230.8 28.1 231 1-284 4-236 (284)
4 3kld_A Contactin 4, axcam, BIG 100.0 1.5E-37 5.1E-42 248.8 14.1 267 1-284 4-339 (384)
5 3p3y_A Neurofascin; IG domains 100.0 1.1E-36 3.7E-41 245.6 17.6 265 2-284 16-356 (404)
6 3qs7_E FL cytokine receptor; i 100.0 7E-36 2.4E-40 240.9 19.8 258 3-284 49-370 (423)
7 3laf_A Deleted in colorectal c 100.0 2.3E-35 7.8E-40 237.8 20.9 262 2-284 21-356 (403)
8 3dmk_A DOWN syndrome cell adhe 100.0 1.9E-35 6.7E-40 258.0 21.9 266 2-281 429-755 (816)
9 2v5m_A Dscam; neurobiology SPL 100.0 2.1E-35 7.2E-40 236.9 20.3 269 2-290 3-357 (388)
10 1bih_A Hemolin; insect immunit 100.0 3.2E-36 1.1E-40 242.2 15.2 269 1-286 5-355 (395)
11 2yd9_A Receptor-type tyrosine- 100.0 2.9E-35 1E-39 228.4 19.7 238 1-284 5-249 (304)
12 1cs6_A Axonin-1; neural cell a 100.0 1.8E-36 6E-41 242.6 12.7 264 2-284 4-338 (382)
13 3dmk_A DOWN syndrome cell adhe 100.0 8.6E-34 2.9E-38 247.6 25.4 263 2-283 343-663 (816)
14 1e07_A Carcinoembryonic antige 100.0 9.4E-33 3.2E-37 235.1 29.3 246 11-284 298-603 (642)
15 2rcj_C Light chain; immunoglob 100.0 6.6E-33 2.3E-37 230.6 27.3 274 5-284 3-367 (523)
16 1e07_A Carcinoembryonic antige 100.0 1.6E-32 5.4E-37 233.7 29.6 254 2-284 112-425 (642)
17 2ocw_A Polymeric-immunoglobuli 100.0 6.6E-32 2.3E-36 227.6 31.2 266 6-279 4-376 (585)
18 2rcj_C Light chain; immunoglob 100.0 1E-32 3.4E-37 229.5 25.5 277 2-283 114-470 (523)
19 1z7z_I Intercellular adhesion 100.0 1.7E-33 5.9E-38 230.0 20.2 262 2-281 85-411 (450)
20 2ec8_A MAST/stem cell growth f 100.0 1.7E-33 5.7E-38 234.3 19.6 253 1-285 35-359 (524)
21 1qz1_A Neural cell adhesion mo 100.0 9.4E-33 3.2E-37 213.0 20.4 229 2-284 2-240 (291)
22 3qs9_E FL cytokine receptor; i 100.0 1.4E-32 4.7E-37 227.3 19.9 255 6-284 52-370 (527)
23 2ocw_A Polymeric-immunoglobuli 100.0 2.5E-31 8.6E-36 224.1 28.0 266 2-282 112-488 (585)
24 2wim_A N-CAM 2, NCAM2, neural 100.0 5.9E-32 2E-36 208.5 21.9 226 1-284 3-238 (291)
25 2ec8_A MAST/stem cell growth f 100.0 4.5E-33 1.6E-37 231.7 16.0 262 2-281 114-447 (524)
26 1qgc_4 Protein (immunoglobulin 100.0 3.7E-32 1.3E-36 221.4 20.6 273 4-282 3-387 (438)
27 2y25_A Myomesin; structural pr 100.0 3.8E-32 1.3E-36 212.1 11.9 227 1-284 6-266 (317)
28 2wng_A Tyrosine-protein phosph 100.0 7E-31 2.4E-35 205.8 16.5 237 3-283 4-265 (327)
29 3rjd_A High affinity immunoglo 100.0 2.5E-30 8.7E-35 196.3 18.6 209 2-283 1-218 (262)
30 1z7z_I Intercellular adhesion 100.0 3.2E-30 1.1E-34 210.7 20.1 245 4-281 1-320 (450)
31 3v2a_R Vascular endothelial gr 100.0 9.9E-32 3.4E-36 233.4 11.2 265 4-282 225-591 (772)
32 1wio_A CD4, T-cell surface gly 100.0 2.6E-31 8.9E-36 211.1 10.7 232 12-283 4-326 (363)
33 4fqp_A Poliovirus receptor; im 100.0 2.2E-30 7.5E-35 201.7 14.9 235 5-284 3-262 (313)
34 2jll_A NCAM2, neural cell adhe 100.0 3.9E-28 1.3E-32 194.7 27.8 252 2-263 1-315 (389)
35 3ejj_X Macrophage colony-stimu 100.0 3.3E-29 1.1E-33 192.9 20.2 220 2-284 4-231 (289)
36 2o26_X MAST/stem cell growth f 100.0 1.8E-29 6E-34 194.5 18.7 209 1-280 11-229 (290)
37 3o4o_C Interleukin-1 receptor 100.0 1.7E-30 5.8E-35 204.6 13.0 227 2-282 18-272 (339)
38 3qs9_E FL cytokine receptor; i 100.0 8.5E-30 2.9E-34 210.7 17.6 213 8-281 233-448 (527)
39 2nzi_A Titin; IG-domain, FNIII 100.0 6.4E-29 2.2E-33 192.8 21.2 222 1-230 3-281 (305)
40 1ry7_B FGFR-3, fibroblast grow 100.0 3.5E-31 1.2E-35 208.1 8.4 224 8-282 14-268 (334)
41 4dep_C Interleukin-1 receptor 100.0 1.9E-29 6.4E-34 199.5 17.3 225 9-283 14-273 (349)
42 1itb_B Type 1 interleukin-1 re 100.0 5.6E-30 1.9E-34 199.6 13.6 221 8-284 11-253 (315)
43 3laf_A Deleted in colorectal c 100.0 2.1E-29 7E-34 203.0 17.2 231 2-241 121-403 (403)
44 2yd6_A PTPRD protein; hydrolas 100.0 3.2E-28 1.1E-32 178.8 21.7 198 2-243 6-208 (212)
45 2y23_A Myomesin; structural pr 100.0 8.9E-29 3.1E-33 192.6 19.8 220 9-282 8-264 (312)
46 2yd1_A Tyrosine-protein phosph 100.0 7.4E-28 2.5E-32 176.9 22.4 146 1-151 5-154 (212)
47 1igt_B IGG2A intact antibody - 100.0 3E-28 1E-32 198.6 21.8 269 6-282 4-390 (444)
48 3vh8_G Killer cell immunoglobu 100.0 2.8E-28 9.6E-33 190.1 19.9 223 2-282 24-259 (316)
49 1iga_A IGA1; immunoglobulin; N 100.0 2E-27 6.9E-32 195.2 25.7 274 5-284 4-396 (475)
50 3u83_A Poliovirus receptor-rel 100.0 2.6E-29 8.8E-34 197.3 13.7 234 3-284 15-277 (331)
51 4fom_A Poliovirus receptor-rel 100.0 1.8E-29 6.1E-34 196.2 11.8 229 10-243 7-304 (308)
52 2a38_A Titin; Z1Z2, structural 100.0 3.7E-28 1.3E-32 176.0 17.7 186 2-237 5-193 (194)
53 3oq3_B IFN-alpha/beta binding 100.0 1.7E-28 5.8E-33 192.3 17.0 211 9-281 36-273 (329)
54 2j8h_A Titin, connectin; cardi 100.0 4.6E-28 1.6E-32 176.0 17.9 182 1-190 3-187 (197)
55 1igy_B IGG1 intact antibody MA 100.0 1E-29 3.4E-34 206.7 8.6 270 6-283 3-381 (434)
56 4dkd_C Macrophage colony-stimu 100.0 1.8E-28 6.3E-33 189.0 13.6 217 2-282 4-229 (292)
57 1hzh_H IGG, immunoglobulin hea 100.0 3E-27 1E-31 193.4 21.5 269 6-283 4-400 (457)
58 2oz4_A Intercellular adhesion 100.0 1.6E-27 5.6E-32 181.1 17.6 200 12-279 13-224 (265)
59 2wqr_A IG epsilon chain C regi 100.0 3.7E-28 1.3E-32 189.9 14.3 243 2-284 7-265 (323)
60 3lcy_A Titin; A-BAND, IG tande 100.0 4.4E-27 1.5E-31 170.7 17.7 178 2-190 7-186 (197)
61 2c5d_C AXL oncogene, tyrosine- 100.0 2.6E-26 9E-31 166.4 20.7 172 2-189 2-181 (195)
62 1za6_B IGG heavy chain; immuno 100.0 2E-27 7E-32 187.3 14.9 255 7-283 5-287 (344)
63 2iep_A Muscle-specific kinase 99.9 4.5E-27 1.5E-31 170.0 15.0 182 2-241 7-192 (192)
64 2wv3_A Neuroplastin; igcam, me 99.9 7.1E-26 2.4E-30 163.4 20.7 129 2-149 3-136 (190)
65 3mjg_X Beta-type platelet-deri 99.9 1.8E-26 6E-31 177.7 18.4 216 3-281 1-222 (289)
66 1rhf_A Tyrosine-protein kinase 99.9 1.9E-25 6.4E-30 160.1 21.8 168 2-189 2-171 (182)
67 3v2a_R Vascular endothelial gr 99.9 2.1E-27 7.3E-32 206.3 13.9 257 9-278 133-462 (772)
68 2vr9_A Roundabout 1, ROBO; imm 99.9 7.8E-27 2.7E-31 172.1 14.3 185 1-191 8-197 (217)
69 2v9r_A Roundabout homolog 1; p 99.9 3.9E-27 1.3E-31 173.1 11.5 197 2-247 9-210 (212)
70 2rik_A Titin; I-SET IG fold, p 99.9 3.1E-25 1.1E-29 170.3 22.2 174 2-189 98-273 (284)
71 3sgj_C Human FCG3A receptor; r 99.9 4.3E-26 1.5E-30 166.0 16.3 168 2-241 7-176 (204)
72 1wio_A CD4, T-cell surface gly 99.9 1.6E-26 5.4E-31 183.6 15.2 200 12-237 106-361 (363)
73 1epf_A NCAM, protein (neural c 99.9 7E-26 2.4E-30 163.6 17.2 171 2-188 2-179 (191)
74 3rbs_A Myomesin-1; immunoglobu 99.9 1.2E-25 4.2E-30 163.8 18.0 178 2-194 3-201 (207)
75 2v5t_A NCAM2, N-CAM 2, neural 99.9 3.8E-26 1.3E-30 164.7 14.9 182 1-238 1-187 (189)
76 2va4_A NCAM2, N-CAM 2, neural 99.9 5.5E-26 1.9E-30 164.3 15.2 186 1-237 1-191 (192)
77 3k0w_A Mucosa-associated lymph 99.9 2.6E-25 9E-30 163.9 18.7 178 2-242 18-205 (218)
78 2v5m_A Dscam; neurobiology SPL 99.9 2.2E-26 7.4E-31 184.5 13.9 226 2-237 103-387 (388)
79 2v44_A NCAM2, neural cell adhe 99.9 2.2E-25 7.6E-30 160.7 17.3 167 4-188 4-175 (189)
80 4fa8_A Secreted protein BARF1; 99.9 3E-26 1E-30 166.1 12.3 170 11-189 2-191 (203)
81 3p3y_A Neurofascin; IG domains 99.9 1.9E-25 6.4E-30 180.0 18.3 217 9-238 123-402 (404)
82 3grw_A Fibroblast growth facto 99.9 3.4E-25 1.2E-29 165.9 18.4 207 2-246 11-225 (241)
83 1f2q_A High affinity immunoglo 99.9 1.4E-25 4.9E-30 159.7 15.6 170 1-242 3-174 (176)
84 3ojm_B Fibroblast growth facto 99.9 3.1E-25 1.1E-29 165.1 17.7 202 2-243 15-225 (231)
85 3p2t_A Leukocyte immunoglobuli 99.9 4.8E-25 1.6E-29 159.8 17.8 173 1-187 4-178 (196)
86 3qs7_E FL cytokine receptor; i 99.9 4.1E-25 1.4E-29 178.2 18.6 210 12-241 149-416 (423)
87 1f97_A Junction adhesion molec 99.9 1.7E-25 5.7E-30 164.3 14.9 195 2-239 1-207 (212)
88 1fnl_A Low affinity immunoglob 99.9 3.5E-25 1.2E-29 157.6 16.0 124 1-148 6-130 (175)
89 1cs6_A Axonin-1; neural cell a 99.9 1.6E-25 5.5E-30 179.1 15.5 215 9-238 108-381 (382)
90 2r15_A Myomesin-1; sarcomeric 99.9 6.6E-25 2.2E-29 161.2 17.2 168 15-188 15-198 (212)
91 1bih_A Hemolin; insect immunit 99.9 4.5E-25 1.5E-29 177.3 17.1 226 8-237 106-394 (395)
92 2d3v_A Leukocyte immunoglobuli 99.9 1.2E-24 4.1E-29 157.7 17.0 172 1-186 4-178 (196)
93 1b6u_A KIR2DL3, P58 killer cel 99.9 3.5E-24 1.2E-28 160.8 19.3 222 2-278 7-240 (257)
94 1vca_A VCAM-D1,2, human vascul 99.9 2.6E-24 8.8E-29 156.4 17.3 188 4-242 2-200 (202)
95 3kld_A Contactin 4, axcam, BIG 99.9 1E-24 3.6E-29 174.4 15.6 131 9-155 212-343 (384)
96 3ry4_A Low affinity immunoglob 99.9 5.3E-24 1.8E-28 150.8 16.4 124 2-149 4-128 (170)
97 1nbq_A JAM, junctional adhesio 99.9 4E-25 1.4E-29 161.9 11.0 141 2-152 4-153 (209)
98 3r4d_A CEA-related cell adhesi 99.9 1.9E-23 6.4E-28 152.9 19.8 187 5-243 2-204 (208)
99 3jz7_A MCAR, CAR, coxsackievir 99.9 4.6E-25 1.6E-29 162.2 11.1 185 5-240 3-213 (214)
100 3nl4_L Antigen binding fragmen 99.9 2E-23 6.9E-28 153.3 19.7 184 3-223 2-198 (213)
101 1ugn_A LIR1, leukocyte immunog 99.9 2.2E-24 7.5E-29 156.6 14.4 174 1-188 4-181 (198)
102 3bp6_B Programmed cell death 1 99.9 3.5E-24 1.2E-28 156.1 15.2 133 5-148 5-144 (202)
103 2yd9_A Receptor-type tyrosine- 99.9 2.8E-24 9.7E-29 166.5 14.8 186 3-243 109-295 (304)
104 2pet_A Lutheran blood group gl 99.9 8.3E-24 2.8E-28 157.4 16.7 200 6-238 4-230 (231)
105 2gi7_A GPVI protein; IG-like d 99.9 1.5E-23 5.3E-28 150.2 16.4 159 1-187 7-167 (184)
106 3mj8_L Stimulatory hamster ant 99.9 7E-24 2.4E-28 155.8 14.6 190 3-231 2-205 (213)
107 3s97_C Contactin-1; carbonic a 99.9 3.2E-24 1.1E-28 156.1 12.6 139 5-151 11-157 (201)
108 2wim_A N-CAM 2, NCAM2, neural 99.9 1.1E-23 3.6E-28 162.3 15.7 184 2-241 98-286 (291)
109 1oll_A NK receptor; immune sys 99.9 4.1E-23 1.4E-27 148.5 17.7 135 1-149 3-139 (188)
110 2y25_A Myomesin; structural pr 99.9 5.6E-24 1.9E-28 165.8 14.1 174 9-189 105-304 (317)
111 3r06_A Anti-mouse CD3epsilon a 99.9 7.3E-23 2.5E-27 150.3 19.3 187 2-230 1-204 (213)
112 1uct_A Immunoglobulin alpha FC 99.9 1.5E-23 5.2E-28 154.0 15.4 166 2-185 9-178 (218)
113 4f80_A Butyrophilin subfamily 99.9 1.7E-23 5.7E-28 155.2 15.7 183 10-239 12-213 (226)
114 1zvo_C Myeloma immunoglobulin 99.9 1.4E-22 4.7E-27 167.7 22.1 229 16-284 149-447 (512)
115 1qgc_4 Protein (immunoglobulin 99.9 7.7E-24 2.6E-28 172.3 14.5 178 2-187 116-320 (438)
116 1nkr_A P58-CL42 KIR; inhibitor 99.9 1.4E-22 4.7E-27 147.4 19.4 137 1-149 7-148 (201)
117 1qz1_A Neural cell adhesion mo 99.9 1.7E-23 5.9E-28 161.1 14.9 181 2-238 100-289 (291)
118 3d9a_L Light chain of hyhel10 99.9 1.8E-23 6E-28 153.6 14.2 191 4-236 3-210 (213)
119 3sob_L Antibody light chain; b 99.9 1.9E-22 6.5E-27 150.6 19.7 188 3-232 25-229 (237)
120 1lk3_L 9D7 light chain; antige 99.9 2.1E-22 7.3E-27 147.5 19.5 183 4-229 3-202 (210)
121 2ifg_A High affinity nerve gro 99.9 3.5E-24 1.2E-28 168.9 10.4 189 2-241 158-347 (347)
122 2fbo_J V1V2;, variable region- 99.9 2.9E-24 1E-28 161.8 9.2 142 5-150 5-179 (250)
123 3sbw_C Programmed cell death 1 99.9 2.3E-22 7.9E-27 148.6 19.1 193 6-245 5-217 (222)
124 4frw_A Poliovirus receptor-rel 99.9 1.4E-23 4.8E-28 154.5 12.3 186 7-238 4-210 (218)
125 3b5h_A Cervical EMMPRIN, HAB18 99.9 2.7E-22 9.3E-27 143.8 18.3 110 12-143 8-120 (184)
126 4dzb_B Vbeta2 (MAIT T cell rec 99.9 7.7E-23 2.6E-27 153.6 15.3 195 3-230 2-222 (246)
127 3mj6_A Junctional adhesion mol 99.9 1.6E-23 5.5E-28 159.3 11.4 225 2-256 5-256 (268)
128 1ry7_B FGFR-3, fibroblast grow 99.9 2.8E-23 9.7E-28 163.1 12.8 194 11-241 132-329 (334)
129 2y23_A Myomesin; structural pr 99.9 1.6E-22 5.5E-27 157.2 16.7 183 2-194 106-306 (312)
130 4fqp_A Poliovirus receptor; im 99.9 5.2E-23 1.8E-27 160.1 13.9 186 2-241 117-306 (313)
131 1hng_A CD2; T lymphocyte adhes 99.9 3.2E-23 1.1E-27 147.3 11.5 154 11-191 5-167 (176)
132 1itb_B Type 1 interleukin-1 re 99.9 1.1E-22 3.7E-27 158.4 15.4 190 12-238 113-313 (315)
133 2x1w_L Vascular endothelial gr 99.9 1.7E-22 5.7E-27 148.3 15.3 192 8-244 13-212 (213)
134 3oq3_B IFN-alpha/beta binding 99.9 1.7E-22 5.8E-27 158.2 16.3 135 2-148 128-273 (329)
135 2ny1_B T-cell surface glycopro 99.9 1.2E-23 4.3E-28 150.8 8.9 166 11-242 4-182 (184)
136 3s96_B 3B5H10 FAB light chain; 99.9 2.9E-23 1E-27 153.0 11.0 144 3-150 2-166 (218)
137 1zvo_C Myeloma immunoglobulin 99.9 1.9E-21 6.6E-26 160.8 22.8 184 7-193 5-225 (512)
138 3tv3_L PGT128 light chain, IG 99.9 9.5E-23 3.2E-27 149.5 13.4 184 3-231 2-203 (211)
139 1q0x_L FAB 9B1, light chain; a 99.9 2.3E-22 7.9E-27 147.5 14.6 187 4-228 3-204 (212)
140 1jbj_A CD3 epsilon and gamma e 99.9 9.3E-23 3.2E-27 146.3 12.1 151 12-189 9-178 (186)
141 1mq8_A ICAM-1, intercellular a 99.9 5.5E-22 1.9E-26 150.5 16.1 216 5-283 2-234 (291)
142 1p6f_A NKP46, natural cytotoxi 99.9 1.9E-21 6.5E-26 144.9 18.8 204 1-262 6-217 (242)
143 3pv7_A B7-H6, IG-like domain-c 99.9 1.8E-23 6.2E-28 157.2 7.5 204 3-243 3-229 (248)
144 2c1o_A IGK-C protein; FAB frag 99.9 4.4E-22 1.5E-26 150.2 15.0 141 2-151 38-200 (254)
145 2xzc_L FAB A.17 light chain; i 99.9 5E-22 1.7E-26 146.2 14.8 193 4-235 3-211 (216)
146 3bkj_L WO2 IGG2A FAB fragment 99.9 7.6E-22 2.6E-26 148.6 16.0 190 3-229 35-241 (252)
147 3ejj_X Macrophage colony-stimu 99.9 9.6E-22 3.3E-26 151.2 16.8 188 5-241 92-283 (289)
148 4i0k_A CD276 antigen; immunogl 99.9 5.9E-23 2E-27 151.8 9.6 193 10-246 3-213 (222)
149 1dr9_A B7-1 (CD80), T lymphocy 99.9 3.4E-22 1.2E-26 145.4 13.4 133 11-151 3-151 (201)
150 2j6e_L IGM, FAB light chain; a 99.9 2.3E-22 7.9E-27 149.8 12.6 144 3-151 21-181 (234)
151 4ei6_B Vbeta16 XV19 type II na 99.9 1E-21 3.5E-26 147.4 15.1 195 2-230 2-221 (245)
152 3q5y_A TCR N15 beta; IG, T cel 99.9 1.2E-21 4E-26 146.6 14.8 189 3-229 3-214 (240)
153 3pl6_D MBP peptide / T-cell re 99.9 8.7E-22 3E-26 149.7 14.2 193 3-229 27-242 (268)
154 3bqu_C 3H6 FAB light chain; be 99.9 1.8E-22 6.1E-27 150.3 9.9 184 3-228 24-224 (233)
155 3auv_A SC-DSFV derived from th 99.9 3.5E-21 1.2E-25 146.9 17.0 143 2-145 12-174 (276)
156 2if7_A SLAM family member 6; N 99.9 7.9E-22 2.7E-26 142.3 12.5 164 7-190 3-182 (193)
157 3u83_A Poliovirus receptor-rel 99.9 5.4E-22 1.8E-26 155.5 12.6 177 8-241 138-322 (331)
158 3nfj_J T cell receptor beta ch 99.9 1E-21 3.5E-26 147.3 13.6 194 4-230 3-221 (245)
159 1moe_A Anti-CEA MAB T84.66; an 99.9 6.6E-21 2.2E-25 142.5 17.7 140 3-144 2-158 (240)
160 2zg1_A Sialic acid-binding IG- 99.9 2.4E-21 8.2E-26 142.3 14.9 165 6-187 4-200 (214)
161 2p1y_A Bispecific alpha/beta T 99.9 2.7E-21 9.2E-26 144.4 15.3 136 4-145 2-165 (238)
162 2o26_X MAST/stem cell growth f 99.9 7.8E-22 2.7E-26 151.8 12.6 190 2-241 91-290 (290)
163 1nfd_E H57 FAB; complex (immun 99.9 1.7E-22 5.8E-27 148.3 8.3 138 5-151 3-159 (212)
164 1igt_B IGG2A intact antibody - 99.9 1E-21 3.4E-26 160.1 12.6 185 3-190 124-331 (444)
165 3juy_B 3B3 single chain varian 99.9 7E-21 2.4E-25 143.7 16.3 139 2-144 6-187 (256)
166 2ghw_B Anti-SARS SCFV antibody 99.9 1.2E-20 4.1E-25 141.7 17.5 136 3-143 4-171 (247)
167 4dep_C Interleukin-1 receptor 99.9 3.7E-22 1.3E-26 157.6 9.6 190 9-239 127-333 (349)
168 3tf7_C 42F3 MUT7 SCFV (42F3 al 99.9 7.6E-21 2.6E-25 143.5 16.0 138 2-144 3-173 (256)
169 3vh8_G Killer cell immunoglobu 99.9 2.8E-20 9.4E-25 144.9 19.6 136 2-149 119-259 (316)
170 1f3r_B FV antibody fragment; I 99.9 1.7E-20 6E-25 141.6 17.9 133 7-143 5-175 (257)
171 3qib_D 2B4 beta chain; IG doma 99.9 3E-21 1E-25 146.9 13.8 198 3-230 28-246 (270)
172 3uzq_A Anti-dengue MAB 4E11; d 99.9 2E-20 6.8E-25 141.0 18.2 209 4-242 3-247 (253)
173 3rjd_A High affinity immunoglo 99.9 1.3E-20 4.5E-25 142.7 17.3 158 5-189 85-248 (262)
174 1nqb_A Single-chain antibody f 99.9 3E-20 1E-24 140.1 18.9 127 6-143 4-162 (256)
175 2znx_A SCFV; fluorotryptohpan, 99.9 1.8E-20 6E-25 140.3 17.5 140 3-144 2-161 (242)
176 1c1e_H Catalytic antibody 1E9 99.9 5.2E-21 1.8E-25 141.0 14.0 136 7-148 5-167 (219)
177 3omz_A Human vdelta1 gamma del 99.9 4.2E-21 1.5E-25 145.2 13.7 144 2-145 2-175 (259)
178 1svz_A Immunoglobulin;, single 99.9 1.9E-20 6.6E-25 140.6 17.1 141 3-145 2-167 (247)
179 3esu_F Antibody 14B7* light ch 99.9 2.5E-20 8.5E-25 140.2 17.8 141 3-144 5-170 (250)
180 2wbj_D OB TCR; transmembrane, 99.9 4.4E-21 1.5E-25 146.6 13.6 200 2-230 24-247 (279)
181 1q9r_B S25-2 FAB (IGG1K) heavy 99.9 7.7E-21 2.6E-25 140.4 14.5 137 7-149 5-171 (222)
182 4fmk_A Poliovirus receptor-rel 99.9 3.7E-21 1.3E-25 142.2 12.8 188 8-239 7-219 (225)
183 3ux9_B SCFV antibody; five hel 99.9 2.4E-20 8.3E-25 140.8 16.6 137 6-144 6-173 (256)
184 3gkz_A Anti-methamphetamine si 99.9 2.8E-20 9.7E-25 140.5 17.0 137 4-144 10-179 (257)
185 4fom_A Poliovirus receptor-rel 99.9 6.9E-22 2.3E-26 153.4 7.9 175 8-198 120-298 (308)
186 1qok_A MFE-23 recombinant anti 99.9 4.8E-20 1.7E-24 141.0 18.1 134 5-143 29-197 (282)
187 2gjj_A A21 single-chain antibo 99.9 7.3E-20 2.5E-24 138.6 18.5 137 2-145 5-178 (264)
188 3eow_R Poliovirus receptor; im 99.9 3.7E-21 1.3E-25 142.0 11.0 132 8-147 5-157 (221)
189 3d9a_H Heavy chain of hyhel10 99.9 8.7E-21 3E-25 138.9 12.8 135 7-148 5-161 (210)
190 2vol_A Murine IGG FC; FC, zinc 99.9 2.4E-21 8.1E-26 141.4 9.5 185 3-227 2-196 (207)
191 3umt_A SCFV heavy chain and li 99.9 6.1E-20 2.1E-24 138.6 17.5 206 6-241 6-247 (256)
192 2rgs_A I, IG gamma-2B heavy ch 99.9 2E-21 6.9E-26 143.0 9.1 142 2-149 9-161 (218)
193 2wng_A Tyrosine-protein phosph 99.9 1E-20 3.4E-25 148.1 13.4 133 11-150 126-265 (327)
194 3o4o_C Interleukin-1 receptor 99.8 2.5E-21 8.7E-26 152.2 9.8 130 12-150 130-273 (339)
195 4dkd_C Macrophage colony-stimu 99.8 1.7E-20 6E-25 144.3 13.7 186 5-240 92-282 (292)
196 1ccz_A Protein (CD58); LFA-3, 99.8 1.2E-20 4.1E-25 133.1 11.3 153 10-191 3-162 (171)
197 1hzh_H IGG, immunoglobulin hea 99.8 1.7E-20 6E-25 153.4 13.9 185 2-190 132-340 (457)
198 3to4_D NKT vbeta2 (mouse varia 99.8 1.7E-20 5.8E-25 141.3 12.7 195 4-228 3-219 (253)
199 3o3u_N Maltose-binding peripla 99.8 2.8E-20 9.6E-25 156.6 15.4 180 10-227 374-565 (581)
200 1sy6_A T-cell surface glycopro 99.8 1.8E-20 6E-25 136.3 12.2 160 14-237 15-202 (204)
201 1x9q_A SCFV, 4M5.3 anti-fluore 99.8 1.1E-19 3.9E-24 138.0 16.9 142 2-144 15-190 (268)
202 1gsm_A Madcam-1, mucosal addre 99.8 8.5E-20 2.9E-24 131.1 15.1 128 5-151 8-143 (210)
203 2oz4_A Intercellular adhesion 99.8 9.2E-21 3.1E-25 143.8 10.7 116 9-146 105-224 (265)
204 1dee_B IGM RF 2A2; FAB-IBP com 99.8 1.9E-19 6.6E-24 132.9 17.1 140 7-150 5-172 (223)
205 2fbj_H IGA-kappa J539 FAB (hea 99.8 1.7E-19 5.6E-24 132.9 16.7 135 7-148 5-166 (220)
206 2dru_A Chimera of CD48 antigen 99.8 2.9E-20 9.9E-25 132.3 12.1 154 10-190 7-171 (180)
207 1mju_H Immunoglobulin MS6-12; 99.8 2.6E-20 8.8E-25 137.9 12.1 193 7-241 5-219 (227)
208 1pz5_B Heavy chain of FAB (SYA 99.8 2.5E-20 8.7E-25 137.4 11.8 134 7-147 5-167 (220)
209 1hxm_B Gamma-delta T-cell rece 99.8 2.1E-19 7.1E-24 134.4 16.6 144 2-148 1-176 (242)
210 3nl4_H Antigen binding fragmen 99.8 5.5E-20 1.9E-24 135.1 12.8 139 6-148 3-163 (215)
211 1igy_B IGG1 intact antibody MA 99.8 8.8E-22 3E-26 160.0 3.5 185 2-190 119-321 (434)
212 1op3_H FAB 2G12, heavy chain; 99.8 8.2E-20 2.8E-24 135.1 13.8 135 7-148 5-171 (225)
213 3m8o_H Immunoglobulin A1 heavy 99.8 5.3E-19 1.8E-23 130.4 18.0 136 6-148 4-167 (221)
214 1hnf_A CD2; T lymphocyte adhes 99.8 4.7E-20 1.6E-24 131.0 11.4 159 9-194 6-175 (182)
215 3mtr_A N-CAM-1, NCAM-1, neural 99.8 3.4E-19 1.2E-23 130.9 16.1 133 2-146 19-156 (215)
216 1rhf_A Tyrosine-protein kinase 99.8 2.9E-19 9.9E-24 127.7 15.3 134 111-284 7-143 (182)
217 3bae_H WO2 IGG2A FAB fragment 99.8 9.9E-20 3.4E-24 134.9 13.0 138 7-148 5-173 (228)
218 2yd1_A Tyrosine-protein phosph 99.8 2.8E-19 9.7E-24 131.0 14.3 133 111-284 11-154 (212)
219 2c5d_C AXL oncogene, tyrosine- 99.8 8.1E-19 2.8E-23 126.9 16.5 142 111-284 7-151 (195)
220 4fa8_A Secreted protein BARF1; 99.8 1.6E-20 5.4E-25 136.0 7.1 142 116-281 3-147 (203)
221 2wqr_A IG epsilon chain C regi 99.8 3.2E-20 1.1E-24 144.9 9.3 182 6-228 117-309 (323)
222 2c1o_A IGK-C protein; FAB frag 99.8 9.7E-20 3.3E-24 137.3 11.7 179 69-284 11-200 (254)
223 2w59_A IGY FCU3-4; immunoglobu 99.8 3.5E-20 1.2E-24 137.5 9.0 195 2-229 12-218 (231)
224 1i1c_A IGG2A, IG gamma-2A chai 99.8 5E-20 1.7E-24 137.1 9.8 186 2-227 15-210 (239)
225 1c5d_H Monoclonal antibody aga 99.8 4.5E-19 1.6E-23 130.1 14.5 138 7-148 5-165 (215)
226 3knb_B Obscurin-like protein 1 99.8 7.7E-20 2.6E-24 118.1 9.0 95 1-100 12-107 (107)
227 1l6x_A Immunoglobulin gamma-1 99.8 3.6E-20 1.2E-24 135.2 8.4 185 3-227 2-196 (207)
228 2gki_A Nuclease; anti-DNA anti 99.8 1.2E-18 4.3E-23 133.7 17.0 134 6-145 26-203 (291)
229 1dn0_B IGM-kappa cold agglutin 99.8 1.1E-18 3.8E-23 129.5 16.1 140 7-150 5-172 (232)
230 2xqy_G A13-D6.3 monoclonal ant 99.8 3E-19 1E-23 134.7 13.2 140 6-148 10-172 (261)
231 3liz_H 4C3 monoclonal antibody 99.8 1.9E-19 6.4E-24 135.5 12.0 135 7-148 5-167 (253)
232 3fku_X Neutralizing antibody F 99.8 1.8E-18 6.2E-23 132.1 17.5 137 3-144 2-178 (280)
233 3lcy_A Titin; A-BAND, IG tande 99.8 3.8E-19 1.3E-23 128.7 13.1 131 112-284 13-147 (197)
234 1bec_A 14.3.D T cell antigen r 99.8 9.9E-19 3.4E-23 130.4 15.5 146 5-151 2-167 (238)
235 2yd6_A PTPRD protein; hydrolas 99.8 6.6E-19 2.3E-23 129.0 14.2 132 112-284 12-152 (212)
236 2a38_A Titin; Z1Z2, structural 99.8 2.4E-19 8.1E-24 129.5 10.9 131 112-284 11-147 (194)
237 1oga_E TRBC1, T-cell receptor 99.8 5.9E-19 2E-23 132.7 13.3 198 3-230 4-220 (252)
238 3mjg_X Beta-type platelet-deri 99.8 1.5E-18 5.2E-23 133.3 15.6 176 12-243 105-282 (289)
239 3rbs_A Myomesin-1; immunoglobu 99.8 6.5E-19 2.2E-23 128.2 12.8 127 115-283 11-160 (207)
240 2va4_A NCAM2, N-CAM 2, neural 99.8 4E-19 1.4E-23 128.1 11.0 126 114-283 12-139 (192)
241 2j8h_A Titin, connectin; cardi 99.8 9.5E-19 3.3E-23 126.7 12.9 132 112-284 10-148 (197)
242 2v44_A NCAM2, neural cell adhe 99.8 6.3E-19 2.2E-23 126.7 11.7 127 113-282 9-138 (189)
243 3bn9_D E2 FAB heavy chain; ant 99.8 8.8E-19 3E-23 131.7 11.5 176 7-187 5-217 (257)
244 1epf_A NCAM, protein (neural c 99.8 2E-18 6.7E-23 124.4 12.8 129 113-282 9-142 (191)
245 3sgj_C Human FCG3A receptor; r 99.8 1.5E-18 5.3E-23 126.1 11.7 116 114-282 15-131 (204)
246 1ow0_A IG alpha-1 chain C regi 99.8 8.3E-20 2.8E-24 133.9 5.0 191 2-227 3-199 (214)
247 3shs_A HOC head outer capsid p 99.8 6.2E-17 2.1E-21 117.4 19.6 158 2-189 2-170 (304)
248 2wv3_A Neuroplastin; igcam, me 99.8 2.6E-18 8.8E-23 123.6 12.3 119 116-282 12-136 (190)
249 3knb_A Titin; IG-like, titin, 99.8 1E-18 3.6E-23 111.4 9.1 95 2-98 5-99 (100)
250 2iep_A Muscle-specific kinase 99.8 8.3E-19 2.8E-23 126.4 9.7 130 111-284 12-144 (192)
251 1ypz_F T-cell receptor gamma c 99.8 8.3E-18 2.8E-22 124.7 14.9 142 5-149 4-175 (230)
252 3qhz_H Human monoclonal antibo 99.8 4.2E-18 1.4E-22 126.5 13.3 185 7-235 5-225 (232)
253 3tv3_H PGT128 heavy chain, IG 99.8 4.4E-18 1.5E-22 126.9 13.3 139 7-148 5-183 (239)
254 1fnl_A Low affinity immunoglob 99.8 4.2E-18 1.4E-22 120.8 12.4 117 113-282 14-131 (175)
255 1f97_A Junction adhesion molec 99.8 2.9E-18 1E-22 125.5 11.8 139 112-283 7-149 (212)
256 3k0w_A Mucosa-associated lymph 99.8 5.5E-18 1.9E-22 124.7 12.8 123 111-284 23-162 (218)
257 2jll_A NCAM2, neural cell adhe 99.8 3.9E-18 1.3E-22 136.6 12.9 134 114-284 8-144 (389)
258 2r15_A Myomesin-1; sarcomeric 99.8 8.6E-18 2.9E-22 123.0 12.8 127 117-284 13-161 (212)
259 1iga_A IGA1; immunoglobulin; N 99.8 1.8E-17 6.1E-22 136.1 15.8 137 9-151 254-396 (475)
260 3u2s_H PG9 heavy chain; greek 99.8 5.2E-18 1.8E-22 127.0 11.4 183 6-232 3-231 (248)
261 2cqv_A MLCK, myosin light chai 99.8 1.9E-17 6.5E-22 108.6 12.8 97 2-103 7-104 (114)
262 3n9g_H FAB fragment of MAB CR4 99.8 1.5E-17 5E-22 123.3 13.5 188 7-237 5-223 (230)
263 4acp_A IG gamma-1 chain C regi 99.8 2.5E-18 8.5E-23 127.6 9.1 184 4-226 25-216 (240)
264 1iam_A ICAM-1, CD54, intercell 99.8 2.4E-16 8.3E-21 110.8 18.7 129 5-150 2-132 (185)
265 1vca_A VCAM-D1,2, human vascul 99.8 1.4E-17 4.7E-22 120.8 12.8 122 116-282 11-136 (202)
266 3ry4_A Low affinity immunoglob 99.8 3E-17 1E-21 115.9 13.8 117 113-282 11-128 (170)
267 1f2q_A High affinity immunoglo 99.7 5.1E-18 1.7E-22 120.5 9.5 117 113-282 11-128 (176)
268 2d3v_A Leukocyte immunoglobuli 99.7 8.8E-18 3E-22 121.5 10.8 121 117-282 15-140 (196)
269 1nbq_A JAM, junctional adhesio 99.7 5.6E-18 1.9E-22 123.7 9.7 140 111-283 9-151 (209)
270 2v5t_A NCAM2, N-CAM 2, neural 99.7 3.7E-18 1.3E-22 122.7 8.4 128 112-284 8-142 (189)
271 3iu4_H CHP3 FAB heavy chain; a 99.7 9.6E-18 3.3E-22 126.6 10.9 184 8-234 6-219 (263)
272 2aty_A Complement receptor chi 99.7 2.4E-17 8.3E-22 131.0 13.7 140 6-149 171-318 (376)
273 2nzi_A Titin; IG-domain, FNIII 99.7 5.2E-17 1.8E-21 125.7 14.9 156 10-192 112-282 (305)
274 1ypz_E T cell receptor delta, 99.7 7.6E-17 2.6E-21 117.3 14.8 135 4-149 3-160 (207)
275 3nl4_L Antigen binding fragmen 99.7 3.1E-17 1.1E-21 120.2 11.9 144 113-283 8-158 (213)
276 1za6_B IGG heavy chain; immuno 99.7 1.6E-18 5.4E-23 136.5 5.0 141 2-149 120-286 (344)
277 3mj8_L Stimulatory hamster ant 99.7 5.6E-17 1.9E-21 118.8 13.0 142 115-283 9-159 (213)
278 2vr9_A Roundabout 1, ROBO; imm 99.7 2.6E-17 9E-22 120.9 11.1 135 111-282 14-151 (217)
279 3sob_H Antibody heavy chain, l 99.7 9.7E-17 3.3E-21 120.9 14.3 185 8-235 29-247 (256)
280 3mlr_H Human monoclonal anti-H 99.7 5E-17 1.7E-21 120.1 12.3 132 8-147 6-169 (226)
281 3bp6_B Programmed cell death 1 99.7 2.9E-17 1E-21 119.3 10.9 130 113-281 9-144 (202)
282 1gsm_A Madcam-1, mucosal addre 99.7 9.9E-17 3.4E-21 115.2 12.1 122 116-285 17-144 (210)
283 2kkq_A Myotilin; unknown funct 99.7 1.5E-16 5.1E-21 104.5 11.9 97 2-102 15-113 (116)
284 2dav_A SLOW MYBP-C, myosin-bin 99.7 3E-16 1E-20 102.8 13.1 101 3-103 8-117 (126)
285 2dm2_A Palladin; beta-sandwich 99.7 1.6E-16 5.5E-21 103.5 11.9 99 1-103 7-107 (110)
286 2v9r_A Roundabout homolog 1; p 99.7 4.1E-17 1.4E-21 119.4 10.0 140 111-284 14-156 (212)
287 3d9a_L Light chain of hyhel10 99.7 1.3E-16 4.4E-21 116.9 12.5 145 113-284 8-158 (213)
288 3p2t_A Leukocyte immunoglobuli 99.7 6E-17 2E-21 117.1 10.6 121 117-282 15-140 (196)
289 1ugn_A LIR1, leukocyte immunog 99.7 2.5E-17 8.7E-22 119.2 8.6 122 116-282 14-141 (198)
290 1dr9_A B7-1 (CD80), T lymphocy 99.7 7.4E-17 2.5E-21 117.1 10.9 140 116-284 4-151 (201)
291 3grw_A Fibroblast growth facto 99.7 1.1E-16 3.8E-21 119.5 11.9 131 113-284 22-162 (241)
292 1uct_A Immunoglobulin alpha FC 99.7 4.8E-17 1.7E-21 119.3 9.7 123 116-282 18-147 (218)
293 3qib_D 2B4 beta chain; IG doma 99.7 5.7E-17 2E-21 123.2 10.4 179 69-283 3-194 (270)
294 2gi7_A GPVI protein; IG-like d 99.7 1.4E-16 4.7E-21 113.9 11.8 113 117-283 18-135 (184)
295 2ifg_A High affinity nerve gro 99.7 4E-18 1.4E-22 134.3 3.5 126 113-285 165-291 (347)
296 1lk3_L 9D7 light chain; antige 99.7 1.8E-16 6E-21 115.9 12.0 145 113-284 7-157 (210)
297 2yuz_A Myosin-binding protein 99.7 1.8E-16 6.1E-21 101.0 10.5 90 2-100 7-97 (100)
298 3ojm_B Fibroblast growth facto 99.7 1.1E-16 3.7E-21 118.8 10.3 129 114-283 27-165 (231)
299 1g1c_A Immunoglobulin-like dom 99.7 2E-16 6.8E-21 101.0 10.0 93 2-98 5-98 (99)
300 3qp3_A Titin; I-SET IG-like, s 99.7 2E-16 6.8E-21 101.8 10.0 93 2-99 8-101 (103)
301 3tv3_L PGT128 light chain, IG 99.7 3.2E-16 1.1E-20 114.6 12.3 140 115-283 9-156 (211)
302 1hng_A CD2; T lymphocyte adhes 99.7 1.7E-16 5.7E-21 112.5 10.4 131 116-284 6-139 (176)
303 2kdg_A Myotilin; immonoglobuli 99.7 1.5E-16 5.1E-21 101.8 9.1 95 2-99 5-99 (100)
304 2rgs_A I, IG gamma-2B heavy ch 99.7 9.6E-17 3.3E-21 117.9 9.3 130 118-283 23-162 (218)
305 1u2h_A APEG-1, aortic preferen 99.7 2.7E-16 9.2E-21 100.4 10.2 94 2-98 5-98 (99)
306 3r06_A Anti-mouse CD3epsilon a 99.7 3.9E-16 1.3E-20 114.3 12.4 145 113-284 8-158 (213)
307 4acp_A IG gamma-1 chain C regi 99.7 6.7E-17 2.3E-21 119.9 8.0 164 75-282 1-174 (240)
308 3b5h_A Cervical EMMPRIN, HAB18 99.7 7.1E-16 2.4E-20 110.2 13.0 115 116-282 8-130 (184)
309 1hxm_A Gamma-delta T-cell rece 99.7 4.2E-15 1.4E-19 109.6 17.4 133 4-149 3-161 (229)
310 2dm3_A KIAA0992 protein, palla 99.7 1.3E-16 4.4E-21 104.0 8.1 98 2-103 9-107 (110)
311 3s96_B 3B5H10 FAB light chain; 99.7 3.6E-16 1.2E-20 114.9 11.4 146 115-283 9-166 (218)
312 2if7_A SLAM family member 6; N 99.7 7.7E-16 2.6E-20 110.8 12.8 146 113-284 5-154 (193)
313 3irg_B Obscurin-like protein 1 99.7 2.7E-16 9.1E-21 101.9 9.4 93 2-99 13-106 (107)
314 1jbj_A CD3 epsilon and gamma e 99.7 3.4E-16 1.2E-20 112.0 10.8 129 117-283 10-147 (186)
315 3knb_B Obscurin-like protein 1 99.7 2.2E-16 7.6E-21 101.8 8.8 90 111-241 18-107 (107)
316 1wit_A Twitchin 18TH IGSF modu 99.7 2.2E-16 7.7E-21 99.4 8.6 89 2-96 2-92 (93)
317 1q0x_L FAB 9B1, light chain; a 99.7 5.6E-16 1.9E-20 113.4 11.8 145 113-284 7-161 (212)
318 2pet_A Lutheran blood group gl 99.7 2.6E-16 9E-21 116.7 10.2 153 112-285 6-165 (231)
319 1oll_A NK receptor; immune sys 99.7 7.7E-16 2.6E-20 110.4 12.0 121 117-282 14-139 (188)
320 3jz7_A MCAR, CAR, coxsackievir 99.7 5.5E-16 1.9E-20 113.5 11.3 147 114-277 8-159 (214)
321 2ny1_B T-cell surface glycopro 99.7 1E-16 3.5E-21 114.6 7.2 138 115-289 4-146 (184)
322 2e7c_A Myosin-binding protein 99.7 7.8E-16 2.7E-20 101.5 10.8 94 2-100 21-117 (118)
323 2fbo_J V1V2;, variable region- 99.7 2.5E-16 8.6E-21 118.2 9.5 156 113-283 9-179 (250)
324 3puc_A Titin; I-SET IG-like do 99.7 5.7E-16 2E-20 98.9 9.8 92 2-98 6-98 (99)
325 2xzc_L FAB A.17 light chain; i 99.7 5.2E-16 1.8E-20 113.9 10.8 146 113-284 7-160 (216)
326 1waa_A Titin; metal binding pr 99.7 1.5E-15 5.1E-20 95.2 11.2 87 2-98 5-92 (93)
327 1nfd_E H57 FAB; complex (immun 99.7 2.3E-16 7.8E-21 115.5 8.4 143 113-284 6-159 (212)
328 2vol_A Murine IGG FC; FC, zinc 99.7 2.9E-16 9.8E-21 114.4 8.9 130 118-283 15-154 (207)
329 3s97_C Contactin-1; carbonic a 99.7 9.8E-17 3.4E-21 116.3 6.4 129 112-283 14-156 (201)
330 2eo9_A Roundabout homolog 1; b 99.7 5.5E-16 1.9E-20 102.3 9.3 92 1-100 7-100 (118)
331 1nkr_A P58-CL42 KIR; inhibitor 99.7 1.2E-15 4.2E-20 110.6 11.9 124 116-282 17-148 (201)
332 3bn3_B ICAM-5, intercellular a 99.7 7.3E-15 2.5E-19 104.0 15.5 131 2-149 2-134 (196)
333 3sob_L Antibody light chain; b 99.7 1.2E-15 4.1E-20 113.6 12.0 145 113-284 31-181 (237)
334 3u1s_H FAB PGT145 heavy chain; 99.7 9.1E-16 3.1E-20 116.2 11.3 180 8-228 29-254 (267)
335 3cx2_A Myosin-binding protein 99.7 3.1E-15 1E-19 96.9 12.0 96 2-97 4-107 (108)
336 2yr3_A Myosin light chain kina 99.7 4.8E-16 1.6E-20 99.2 8.1 88 2-96 11-98 (99)
337 2edj_A Roundabout homolog 2; K 99.6 8.5E-16 2.9E-20 98.2 9.2 91 1-99 7-99 (100)
338 1nct_A Titin; cell adhesion, g 99.6 4E-16 1.4E-20 100.7 7.7 91 2-97 14-105 (106)
339 3sbw_C Programmed cell death 1 99.6 9.8E-16 3.3E-20 112.9 10.7 146 113-283 8-160 (222)
340 4f80_A Butyrophilin subfamily 99.6 4.9E-16 1.7E-20 114.9 8.9 80 202-283 82-163 (226)
341 3r4d_A CEA-related cell adhesi 99.6 2.8E-15 9.6E-20 109.3 12.8 141 116-284 9-153 (208)
342 2j6e_L IGM, FAB light chain; a 99.6 1E-15 3.5E-20 113.8 10.5 146 113-284 26-181 (234)
343 3pv7_A B7-H6, IG-like domain-c 99.6 1E-16 3.5E-21 120.3 5.1 146 113-281 10-161 (248)
344 4dzb_B Vbeta2 (MAIT T cell rec 99.6 1.5E-15 5.2E-20 113.7 11.4 151 113-284 8-171 (246)
345 2v5y_A Receptor-type tyrosine- 99.6 1.3E-13 4.5E-18 119.0 24.6 228 17-263 91-382 (731)
346 2w59_A IGY FCU3-4; immunoglobu 99.6 7.6E-16 2.6E-20 114.1 9.1 133 114-284 21-164 (231)
347 2edn_A Myosin-binding protein 99.6 1.8E-15 6.1E-20 98.0 9.6 98 2-99 12-117 (118)
348 3irg_A Titin; IG-like, titin, 99.6 1.9E-15 6.5E-20 96.6 9.4 91 2-97 5-98 (100)
349 3bkj_L WO2 IGG2A FAB fragment 99.6 3.2E-15 1.1E-19 112.4 11.9 145 113-284 41-196 (252)
350 1ccz_A Protein (CD58); LFA-3, 99.6 1.6E-15 5.5E-20 106.8 9.1 129 116-283 5-133 (171)
351 4frw_A Poliovirus receptor-rel 99.6 1.1E-15 3.9E-20 112.0 8.6 150 113-283 6-161 (218)
352 2edf_A Obscurin; beta-sandwich 99.6 3E-15 1E-19 96.1 9.4 91 2-102 8-99 (103)
353 1c1e_H Catalytic antibody 1E9 99.6 1.6E-15 5.4E-20 111.6 9.2 146 114-281 8-167 (219)
354 2bk8_A Connectin, M1, titin he 99.6 9.7E-15 3.3E-19 92.7 11.5 90 4-98 3-94 (97)
355 1x44_A Myosin-binding protein 99.6 8.2E-15 2.8E-19 94.1 11.2 90 2-101 7-99 (103)
356 2ckn_A Basic fibroblast growth 99.6 1.6E-15 5.3E-20 95.9 7.6 86 1-96 8-94 (95)
357 1p6f_A NKP46, natural cytotoxi 99.6 7.9E-15 2.7E-19 109.2 12.5 121 117-282 17-142 (242)
358 1wwb_X Protein (brain derived 99.6 9.8E-15 3.4E-19 93.5 11.3 86 15-100 14-100 (103)
359 2e6p_A Obscurin-like protein 1 99.6 5.8E-15 2E-19 95.0 10.3 91 2-102 7-101 (104)
360 1b6u_A KIR2DL3, P58 killer cel 99.6 1.1E-14 3.6E-19 109.3 13.1 124 116-282 16-147 (257)
361 3knb_A Titin; IG-like, titin, 99.6 3.9E-15 1.3E-19 94.7 9.3 78 111-190 10-89 (100)
362 1fhg_A Telokin; immunoglobulin 99.6 4.8E-15 1.6E-19 102.5 10.5 95 2-100 41-136 (154)
363 3kvq_A Vascular endothelial gr 99.6 1.3E-15 4.6E-20 98.8 7.1 92 2-100 10-102 (108)
364 1hnf_A CD2; T lymphocyte adhes 99.6 3.9E-15 1.3E-19 105.6 10.0 130 114-281 7-141 (182)
365 2yuv_A Myosin-binding protein 99.6 1.2E-14 4.1E-19 92.8 11.2 89 2-100 7-97 (100)
366 2lu7_A Obscurin-like protein 1 99.6 4.9E-15 1.7E-19 90.7 9.0 80 9-98 3-83 (84)
367 3f8u_B Tapasin; endoplasmic re 99.6 4.7E-14 1.6E-18 110.3 16.6 132 8-145 164-335 (401)
368 1i1c_A IGG2A, IG gamma-2A chai 99.6 1.3E-15 4.4E-20 113.3 7.5 131 118-283 29-168 (239)
369 3pl6_D MBP peptide / T-cell re 99.6 9E-15 3.1E-19 110.9 12.3 148 112-283 32-191 (268)
370 2lvc_A Obscurin-like protein 1 99.6 4.4E-15 1.5E-19 92.4 8.7 76 2-83 4-82 (91)
371 2eny_A Obscurin; beta-sandwich 99.6 5.7E-15 2E-19 94.8 9.5 90 2-100 8-99 (104)
372 3nfj_J T cell receptor beta ch 99.6 8.9E-15 3.1E-19 109.5 12.0 144 113-283 8-169 (245)
373 3eow_R Poliovirus receptor; im 99.6 7.9E-16 2.7E-20 113.4 6.1 144 114-279 7-156 (221)
374 2x1w_L Vascular endothelial gr 99.6 1.7E-15 5.8E-20 110.9 7.7 124 113-282 14-149 (213)
375 2dku_A KIAA1556 protein; beta- 99.6 1.8E-14 6E-19 92.5 11.5 91 2-102 8-99 (103)
376 4ei6_B Vbeta16 XV19 type II na 99.6 1.4E-14 4.9E-19 108.3 12.7 147 113-283 9-169 (245)
377 1l6x_A Immunoglobulin gamma-1 99.6 2.5E-15 8.7E-20 109.4 8.3 130 119-283 16-154 (207)
378 1sy6_A T-cell surface glycopro 99.6 4.5E-15 1.5E-19 107.7 9.6 55 118-184 15-69 (204)
379 2edk_A Myosin-binding protein 99.6 2E-15 6.7E-20 96.6 6.8 93 2-99 8-100 (101)
380 1zxq_A ICAM-2, intercellular a 99.6 1.2E-13 4.1E-18 96.9 16.0 128 3-149 3-133 (192)
381 2ghw_B Anti-SARS SCFV antibody 99.6 1.5E-14 5.3E-19 108.3 12.4 144 115-281 11-178 (247)
382 3bfo_A Mucosa-associated lymph 99.6 8.3E-15 2.9E-19 91.7 9.1 84 1-97 2-86 (91)
383 2e7b_A Obscurin; IG-like domai 99.6 1.6E-14 5.6E-19 92.7 10.7 89 2-100 8-97 (103)
384 3bqu_C 3H6 FAB light chain; be 99.6 5.4E-16 1.9E-20 115.2 4.2 145 113-284 30-180 (233)
385 1he7_A High affinity nerve gro 99.6 1.4E-14 4.6E-19 94.9 10.1 96 2-101 4-102 (126)
386 1nqb_A Single-chain antibody f 99.6 1.6E-14 5.6E-19 108.7 12.0 143 114-281 8-169 (256)
387 3m45_A Cell adhesion molecule 99.6 3.9E-14 1.3E-18 91.8 12.1 94 2-100 6-108 (108)
388 2dlt_A Myosin binding protein 99.6 8.4E-15 2.9E-19 94.6 8.8 90 1-98 7-97 (106)
389 3q5y_A TCR N15 beta; IG, T cel 99.6 2.4E-14 8.4E-19 106.7 12.5 148 113-284 9-168 (240)
390 2k1m_A Myosin-binding protein 99.6 2.3E-14 7.8E-19 90.5 10.5 86 2-97 8-94 (95)
391 1gxe_A Myosin binding protein 99.6 6.5E-15 2.2E-19 99.2 8.4 84 9-97 25-138 (139)
392 2cqv_A MLCK, myosin light chai 99.6 4.8E-14 1.6E-18 92.3 12.3 92 111-243 12-103 (114)
393 1f3r_B FV antibody fragment; I 99.6 2.5E-14 8.5E-19 107.8 12.4 139 116-280 10-181 (257)
394 2e6q_A Obscurin-like protein 1 99.6 6.1E-14 2.1E-18 90.2 12.3 89 2-100 8-107 (112)
395 2zg1_A Sialic acid-binding IG- 99.6 3E-14 1E-18 104.3 12.4 145 113-281 7-168 (214)
396 3d9a_H Heavy chain of hyhel10 99.6 6.3E-15 2.2E-19 107.6 8.7 142 114-281 8-161 (210)
397 4i0k_A CD276 antigen; immunogl 99.6 5.2E-15 1.8E-19 109.0 8.2 142 116-283 5-155 (222)
398 3esu_F Antibody 14B7* light ch 99.6 4E-14 1.4E-18 106.2 12.9 138 112-277 10-170 (250)
399 2wbj_D OB TCR; transmembrane, 99.6 1.3E-14 4.4E-19 110.7 10.2 144 113-284 31-196 (279)
400 1q9r_B S25-2 FAB (IGG1K) heavy 99.6 1.6E-14 5.6E-19 106.4 10.4 81 202-282 80-171 (222)
401 2dru_A Chimera of CD48 antigen 99.6 2.2E-14 7.6E-19 101.8 10.5 135 114-282 7-142 (180)
402 1moe_A Anti-CEA MAB T84.66; an 99.6 3.1E-14 1.1E-18 106.1 11.7 137 113-277 8-158 (240)
403 2edh_A Obscurin; structural ge 99.6 6.7E-14 2.3E-18 91.4 11.6 88 2-100 19-107 (113)
404 1pd6_A Cardiac MYBP-C;, myosin 99.6 5E-14 1.7E-18 90.3 10.7 86 2-97 15-103 (104)
405 1mq8_A ICAM-1, intercellular a 99.6 2.3E-15 7.9E-20 114.2 5.0 130 7-150 91-234 (291)
406 2znx_A SCFV; fluorotryptohpan, 99.6 3.8E-14 1.3E-18 105.8 11.1 137 113-277 8-161 (242)
407 1dee_B IGM RF 2A2; FAB-IBP com 99.5 8.5E-14 2.9E-18 102.6 12.6 149 115-283 9-172 (223)
408 2yuz_A Myosin-binding protein 99.5 8.1E-14 2.8E-18 88.6 10.9 87 111-242 12-98 (100)
409 2lu7_A Obscurin-like protein 1 99.5 5.8E-14 2E-18 85.9 9.8 66 114-182 4-69 (84)
410 1bec_A 14.3.D T cell antigen r 99.5 4.2E-14 1.4E-18 105.3 11.0 147 113-284 6-167 (238)
411 3so5_A LIG-3, leucine-rich rep 99.5 3.5E-14 1.2E-18 92.6 9.4 96 1-96 9-111 (112)
412 3auv_A SC-DSFV derived from th 99.5 6.4E-14 2.2E-18 106.7 12.1 137 113-277 19-173 (276)
413 3caf_A Fibroblast growth facto 99.5 9.5E-15 3.2E-19 93.3 6.3 92 2-96 4-99 (100)
414 3o3u_N Maltose-binding peripla 99.5 1.8E-14 6.3E-19 121.3 9.7 139 114-284 374-517 (581)
415 1op3_H FAB 2G12, heavy chain; 99.5 2.4E-14 8.2E-19 105.7 9.1 145 115-281 9-171 (225)
416 2ens_A Advanced glycosylation 99.5 1.7E-14 5.7E-19 91.3 7.1 82 2-96 10-93 (96)
417 1g1c_A Immunoglobulin-like dom 99.5 3.8E-14 1.3E-18 90.3 8.8 77 112-189 11-87 (99)
418 2p1y_A Bispecific alpha/beta T 99.5 8E-14 2.7E-18 103.8 11.7 138 113-278 7-165 (238)
419 3qr2_A Basigin; CD147, EMMPRIN 99.5 8.5E-14 2.9E-18 94.2 10.8 87 1-89 20-117 (137)
420 1hxm_B Gamma-delta T-cell rece 99.5 2.9E-13 9.8E-18 101.0 14.5 151 113-282 8-177 (242)
421 2dm7_A KIAA1556 protein; beta- 99.5 8.2E-14 2.8E-18 90.2 10.1 89 1-100 7-96 (108)
422 2fbj_H IGA-kappa J539 FAB (hea 99.5 7E-14 2.4E-18 102.8 11.0 145 115-281 9-166 (220)
423 4fmk_A Poliovirus receptor-rel 99.5 2.6E-14 9.1E-19 105.2 8.6 77 115-192 10-111 (225)
424 2cpc_A KIAA0657 protein; immun 99.5 2.1E-13 7.2E-18 89.0 11.9 89 2-100 10-102 (113)
425 3to4_D NKT vbeta2 (mouse varia 99.5 6.4E-14 2.2E-18 105.3 10.8 146 113-283 8-169 (253)
426 3ux9_B SCFV antibody; five hel 99.5 1.1E-13 3.9E-18 104.1 12.1 136 114-277 10-173 (256)
427 2kkq_A Myotilin; unknown funct 99.5 2.7E-13 9.1E-18 88.9 12.3 94 111-244 20-114 (116)
428 1pz5_B Heavy chain of FAB (SYA 99.5 6.4E-14 2.2E-18 103.0 10.3 79 202-280 80-167 (220)
429 1mju_H Immunoglobulin MS6-12; 99.5 3.4E-14 1.2E-18 105.0 8.8 146 114-281 8-164 (227)
430 3gkz_A Anti-methamphetamine si 99.5 1.3E-13 4.6E-18 103.8 12.1 141 114-277 16-179 (257)
431 1svz_A Immunoglobulin;, single 99.5 9.3E-14 3.2E-18 104.0 11.1 137 113-277 8-166 (247)
432 1z9m_A GAPA225; nectin-like, I 99.5 1.7E-13 5.8E-18 93.7 11.4 95 3-102 39-142 (145)
433 3umt_A SCFV heavy chain and li 99.5 2.6E-13 8.7E-18 102.2 13.4 140 115-277 11-175 (256)
434 3nl4_H Antigen binding fragmen 99.5 2.2E-13 7.4E-18 99.8 12.6 146 114-281 7-163 (215)
435 1c5d_H Monoclonal antibody aga 99.5 2.5E-13 8.7E-18 99.4 12.8 147 114-281 8-165 (215)
436 2cr6_A KIAA1556 protein, obscu 99.5 3E-14 1E-18 93.4 7.0 91 2-100 13-104 (115)
437 3bae_H WO2 IGG2A FAB fragment 99.5 5.4E-14 1.9E-18 104.0 9.1 145 114-281 8-173 (228)
438 3uzq_A Anti-dengue MAB 4E11; d 99.5 1.4E-13 4.8E-18 103.5 11.3 75 202-277 79-174 (253)
439 1u2h_A APEG-1, aortic preferen 99.5 9.5E-14 3.3E-18 88.4 8.9 76 113-189 12-87 (99)
440 2kdg_A Myotilin; immonoglobuli 99.5 6.6E-14 2.3E-18 89.3 8.0 76 112-188 11-86 (100)
441 1qok_A MFE-23 recombinant anti 99.5 1.8E-13 6E-18 104.6 11.6 144 114-281 34-204 (282)
442 3s35_X Vascular endothelial gr 99.5 7.6E-14 2.6E-18 92.5 8.3 96 5-100 10-112 (122)
443 2cr3_A Basic fibroblast growth 99.5 5.9E-14 2E-18 89.3 7.4 87 4-100 5-92 (99)
444 3mj6_A Junctional adhesion mol 99.5 8.3E-14 2.8E-18 105.6 9.6 139 113-277 12-158 (268)
445 2v9t_A Roundabout homolog 1; s 99.5 2.1E-14 7.3E-19 94.4 5.4 97 2-98 9-109 (117)
446 3rgv_A YAE62 TCR A chain; TCR, 99.5 3.1E-13 1.1E-17 96.4 11.6 142 4-152 2-156 (200)
447 3irg_B Obscurin-like protein 1 99.5 1.5E-13 5.1E-18 88.8 8.8 89 112-241 19-107 (107)
448 2xqy_G A13-D6.3 monoclonal ant 99.5 2.9E-13 9.8E-18 102.0 11.7 146 114-281 14-172 (261)
449 1wwc_A Protein (NT-3 growth fa 99.5 2.2E-13 7.6E-18 89.6 9.7 95 2-100 8-103 (118)
450 3kvq_A Vascular endothelial gr 99.5 1.2E-13 4.2E-18 89.4 8.4 89 111-242 15-103 (108)
451 2aty_A Complement receptor chi 99.5 2.3E-13 7.8E-18 108.2 11.6 130 118-283 180-319 (376)
452 3juy_B 3B3 single chain varian 99.5 6.1E-13 2.1E-17 100.1 13.4 145 111-276 11-186 (256)
453 3tf7_C 42F3 MUT7 SCFV (42F3 al 99.5 2.4E-13 8.2E-18 102.3 11.1 140 112-277 9-173 (256)
454 2cry_A KIN of IRRE-like protei 99.5 1E-14 3.4E-19 96.8 3.1 97 2-100 14-115 (122)
455 1oga_E TRBC1, T-cell receptor 99.5 2.1E-13 7.3E-18 102.3 10.7 148 112-284 9-169 (252)
456 2dm2_A Palladin; beta-sandwich 99.5 2.9E-13 9.8E-18 87.9 9.9 90 112-241 14-104 (110)
457 2e7c_A Myosin-binding protein 99.5 4.1E-13 1.4E-17 88.4 10.6 87 113-241 31-117 (118)
458 1gl4_B Basement membrane-speci 99.5 2E-13 6.7E-18 86.7 8.7 86 3-97 10-97 (98)
459 1ypz_F T-cell receptor gamma c 99.5 4.9E-13 1.7E-17 98.9 12.1 145 113-283 8-176 (230)
460 3rbg_A Cytotoxic and regulator 99.5 3.9E-13 1.3E-17 89.3 10.3 93 4-101 3-104 (124)
461 2eys_A NKT15; natural killer T 99.5 1.4E-12 4.9E-17 94.5 14.0 164 4-185 5-185 (210)
462 2gjj_A A21 single-chain antibo 99.5 4.4E-13 1.5E-17 101.3 11.8 135 113-277 12-177 (264)
463 2edj_A Roundabout homolog 2; K 99.5 3.8E-13 1.3E-17 85.7 9.7 86 111-240 13-99 (100)
464 2bk8_A Connectin, M1, titin he 99.5 4.8E-13 1.6E-17 84.7 10.1 77 112-190 7-84 (97)
465 3omz_A Human vdelta1 gamma del 99.5 1.7E-13 5.8E-18 103.3 9.4 145 113-278 9-175 (259)
466 3qp3_A Titin; I-SET IG-like, s 99.5 2.9E-13 9.9E-18 86.8 9.1 74 113-188 15-88 (103)
467 2eo9_A Roundabout homolog 1; b 99.5 3.6E-13 1.2E-17 88.6 9.7 89 111-243 13-102 (118)
468 3bn9_D E2 FAB heavy chain; ant 99.5 2.5E-13 8.5E-18 102.0 9.7 80 202-281 78-176 (257)
469 1ow0_A IG alpha-1 chain C regi 99.5 2.1E-14 7.2E-19 105.1 3.8 134 113-284 11-153 (214)
470 1dn0_B IGM-kappa cold agglutin 99.5 4.4E-13 1.5E-17 99.3 11.0 146 115-283 9-172 (232)
471 4hwu_A Fibroblast growth facto 99.5 3.3E-13 1.1E-17 85.1 8.3 84 6-100 5-89 (95)
472 3mtr_A N-CAM-1, NCAM-1, neural 99.5 1.3E-12 4.5E-17 95.6 12.7 126 113-280 25-157 (215)
473 3puc_A Titin; I-SET IG-like do 99.5 6E-13 2E-17 84.6 9.5 76 112-189 12-87 (99)
474 3shs_A HOC head outer capsid p 99.5 1.6E-12 5.3E-17 94.7 12.6 121 114-284 10-144 (304)
475 1nct_A Titin; cell adhesion, g 99.5 1.7E-13 6E-18 88.2 7.0 78 111-190 19-96 (106)
476 1wit_A Twitchin 18TH IGSF modu 99.5 2.8E-13 9.7E-18 85.1 7.7 72 113-188 9-82 (93)
477 3mbe_C I-AG7; T cell receptor, 99.4 3.5E-12 1.2E-16 92.8 14.2 140 4-151 3-156 (229)
478 1fhg_A Telokin; immunoglobulin 99.4 4.9E-13 1.7E-17 92.3 9.3 96 113-248 48-143 (154)
479 2bnu_A TCR alpha chain, T-cell 99.4 2.8E-13 9.5E-18 97.9 8.4 128 5-139 3-147 (203)
480 3liz_H 4C3 monoclonal antibody 99.4 7.4E-13 2.5E-17 99.5 10.9 145 115-280 9-166 (253)
481 2xot_A Amphoterin-induced prot 99.4 1.8E-13 6.3E-18 108.1 8.0 109 8-140 252-360 (361)
482 3m8o_H Immunoglobulin A1 heavy 99.4 6.8E-13 2.3E-17 97.6 10.5 79 202-281 80-167 (221)
483 1he7_A High affinity nerve gro 99.4 5.5E-13 1.9E-17 87.2 8.8 89 120-242 14-102 (126)
484 1gxe_A Myosin binding protein 99.4 1.9E-13 6.6E-18 92.0 6.8 32 113-145 25-56 (139)
485 2eo1_A OBSCN protein, cDNA FLJ 99.4 7.3E-13 2.5E-17 84.7 9.2 81 10-100 19-100 (102)
486 2lvc_A Obscurin-like protein 1 99.4 1.3E-13 4.6E-18 85.7 5.4 68 116-186 16-83 (91)
487 2dm3_A KIAA0992 protein, palla 99.4 1.7E-13 5.7E-18 89.1 5.9 91 112-242 15-105 (110)
488 3c6l_A TCR 2W20 alpha chain; T 99.1 1.1E-14 3.9E-19 102.9 0.0 138 5-149 3-152 (185)
489 2dav_A SLOW MYBP-C, myosin-bin 99.4 5.2E-13 1.8E-17 87.4 7.8 95 111-239 12-111 (126)
490 1waa_A Titin; metal binding pr 99.4 5E-13 1.7E-17 83.6 7.4 73 111-186 10-82 (93)
491 1x9q_A SCFV, 4M5.3 anti-fluore 99.4 1E-12 3.4E-17 99.6 10.3 137 113-277 22-190 (268)
492 1wwb_X Protein (brain derived 99.4 8.5E-13 2.9E-17 84.4 8.4 88 119-242 14-101 (103)
493 3irg_A Titin; IG-like, titin, 99.4 1.2E-12 4.2E-17 83.3 9.0 77 111-189 10-88 (100)
494 2xot_A Amphoterin-induced prot 99.4 4.4E-13 1.5E-17 106.0 8.2 108 113-273 253-360 (361)
495 2edh_A Obscurin; structural ge 99.4 2.3E-12 7.9E-17 84.0 10.2 105 86-243 5-109 (113)
496 3gsn_A RA14 TCR alpha chain (T 99.4 2.4E-12 8E-17 91.9 10.8 141 4-151 2-155 (199)
497 2ckn_A Basic fibroblast growth 99.4 5.3E-13 1.8E-17 84.1 6.6 72 111-189 14-85 (95)
498 1ntl_A CRRY-IG; immunology, co 99.4 7.7E-12 2.6E-16 104.3 15.3 138 7-149 347-493 (551)
499 2gki_A Nuclease; anti-DNA anti 99.4 3.6E-12 1.2E-16 97.7 12.1 140 115-277 31-202 (291)
500 2cpc_A KIAA0657 protein; immun 99.4 8.2E-12 2.8E-16 81.4 12.2 86 116-247 23-108 (113)
No 1
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}
Probab=100.00 E-value=1.1e-39 Score=273.74 Aligned_cols=266 Identities=26% Similarity=0.471 Sum_probs=214.9
Q ss_pred CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecC-CCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEE
Q psy14540 2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLA-GDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCT 80 (291)
Q Consensus 2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~ 80 (291)
||.|...|....+.+|+.++|.|.+.+.|.+.++|++++..+. ..++... .......|.|.+++.+|+|.|+|.
T Consensus 197 pp~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~i~W~k~g~~i~~~~~~~~~-----~~~~~~~L~i~~v~~~D~G~Y~C~ 271 (570)
T 3b43_A 197 PPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMT-----LVENTATLTVLKVTKGDAGQYTCY 271 (570)
T ss_dssp CCEEEECCCCBCCBSBSCEEEEEEEESSSCCEEEEEETTEECCTTSSEEEE-----EETTEEEEEESSBCGGGCEEEEEE
T ss_pred CCccccCCceeEecCCCeEEEEEEEEECCCCEEEEEECCEECcCCCcEEEE-----EECCEEEEEEcccCcccCEEEEEE
Confidence 5777778888889999999999999998889999999999886 3333221 112236799999999999999999
Q ss_pred EeCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccC
Q psy14540 81 ATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSG 160 (291)
Q Consensus 81 ~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~ 160 (291)
+.|..|.....+.|.|..+|. ..........+.+|+.+.|.|.+ .|.|.+.+.|++++..+....+.......
T Consensus 272 a~N~~g~~~~~~~l~V~~~p~------~~~~~~~~~~v~~g~~~~l~C~~-~g~P~p~v~W~k~~~~l~~~~~~~~~~~~ 344 (570)
T 3b43_A 272 ASNVAGKDSCSAQLGVQEPPR------FIKKLEPSRIVKQDEHTRYECKI-GGSPEIKVLWYKDETEIQESSKFRMSFVE 344 (570)
T ss_dssp EEETTEEEEEEEEECCBCCCE------EEECCCSBCCEESSCEEEEEEEE-ESSSSCEEEEEETTEECCCSSSEEEEEET
T ss_pred EECCCCcEEEEEEEEeecCCc------ccccCCCccEEcCCCcEEEEEEE-eeCCCCEEEEeECCEECCCCCcEEEEEEC
Confidence 999988888888888876542 11122223457799999999999 68999999999999999877665544322
Q ss_pred CceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEec----------------------------------------
Q psy14540 161 EYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNE---------------------------------------- 200 (291)
Q Consensus 161 ~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~---------------------------------------- 200 (291)
....|.|.++..+|+|.|+|.|.|..|.......+.+..
T Consensus 345 -~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~P~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~v~W~k~g~ 423 (570)
T 3b43_A 345 -SVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKR 423 (570)
T ss_dssp -TEEEEEEESCCGGGCEEEEEEEEBTTBCCEEEEEECEECCCEECSCCCCEEECTTCCEEEEEEEESSSSCCCEEEETTE
T ss_pred -CEEEEEECCCCcccCEEEEEEEEeCCCEEEEEEEEEecCCCeeecCCCceeecCCCEEEEEEEEecCCCCEEEEEECCE
Confidence 356899999999999999999999998776555544111
Q ss_pred --------------cceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCCCCCCCCccc-ccCCceEEEEEEeec
Q psy14540 201 --------------YTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGPFTFGE-LMEGVRTQVACVVQS 265 (291)
Q Consensus 201 --------------~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~-~~~g~~v~l~C~~~~ 265 (291)
...+|.|.++..+|+|.|+|.|.|..|.......|.|..+|.+...+... +.+|+.+.|.|.+ .
T Consensus 424 ~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~~P~~~~~~~~~~~~~g~~~~l~c~~-~ 502 (570)
T 3b43_A 424 ELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLKAPPRFVKKLSDISTVVGEEVQLQATI-E 502 (570)
T ss_dssp ECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEECCCCEEEECCCCBCCBTTCCEEEEEEE-E
T ss_pred ECcCCCCEEEEEcCCEEEEEECCCChhhCEEEEEEEEECCCeEEEEEEEEeccCCcccccCCCceecCCCeEEEEEEE-e
Confidence 12478899999999999999999999998888999999999887766555 8899999999999 8
Q ss_pred CCCCceEEEEECCEEc
Q psy14540 266 GDLPLSLQWYKNGLAI 281 (291)
Q Consensus 266 ~~p~~~v~W~~~~~~l 281 (291)
|.|++.|.|+|||..+
T Consensus 503 g~p~~~v~W~k~~~~~ 518 (570)
T 3b43_A 503 GAEPISVAWFKDKGEI 518 (570)
T ss_dssp SCSSCCCEEEETTEEC
T ss_pred cCCCCEEEEEeCCeEe
Confidence 9999999999998655
No 2
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}
Probab=100.00 E-value=2.4e-39 Score=271.52 Aligned_cols=271 Identities=26% Similarity=0.479 Sum_probs=216.1
Q ss_pred CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCC-eeEeceEEeeccceEEEEEEeecCCCCCeEEEEE
Q psy14540 2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGD-RFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCT 80 (291)
Q Consensus 2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~ 80 (291)
||.|...+.+..+.+|+.+.|.|.+.+.|.+.+.|+++|..+... .... .......+|.|.+++.+|+|.|+|.
T Consensus 101 ~p~~~~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~-----~~~~~~~~L~i~~~~~~d~G~Y~C~ 175 (570)
T 3b43_A 101 PPSFARKLKDVHETLGFPVAFECRINGSEPLQVSWYKDGELLKDDANLQT-----SFIHNVATLQILQTDQSHVGQYNCS 175 (570)
T ss_dssp CCEESSCCCCEEEETTSCEEEEEEEESSSSCEEEEEETTEECCCCSSEEE-----EEETTEEEEEESSCCGGGCEEEEEE
T ss_pred CCcccccCCCeEecCCCeEEEEEEEccCCCCEEEEEECCEECcCCCCEEE-----EEECCEEEEEECcCChHHCEEEEEE
Confidence 567777777788899999999999999888999999999988732 2221 1112346799999999999999999
Q ss_pred EeCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccC
Q psy14540 81 ATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSG 160 (291)
Q Consensus 81 ~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~ 160 (291)
+.|..|.......+.|.....+| .....+....+.+|+.+.|.|.+ .|.|.+.+.|++++..+....+..+....
T Consensus 176 a~n~~g~~~~~~~l~v~~~~~pp----~~~~~p~~~~v~~G~~~~l~C~~-~g~p~p~i~W~k~g~~i~~~~~~~~~~~~ 250 (570)
T 3b43_A 176 ASNPLGTASSSAKLTLSEHEVPP----FFDLKPVSVDLALGESGTFKCHV-TGTAPIKITWAKDNREIRPGGNYKMTLVE 250 (570)
T ss_dssp EEETTEEEEEEEEEEEECCCCCC----EEEECCCCBCCBSBSCEEEEEEE-ESSSCCEEEEEETTEECCTTSSEEEEEET
T ss_pred EEeCCcEEEEEEEEEEcCCCCCC----ccccCCceeEecCCCeEEEEEEE-EECCCCEEEEEECCEECcCCCcEEEEEEC
Confidence 99988887777788886544322 12233445667899999999999 68889999999999998776665544322
Q ss_pred CceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEE------------------------------------------
Q psy14540 161 EYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRV------------------------------------------ 198 (291)
Q Consensus 161 ~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~------------------------------------------ 198 (291)
....|.|.++..+|.|.|+|.|.|..|.......+.+
T Consensus 251 -~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~P~p~v~W~k~~ 329 (570)
T 3b43_A 251 -NTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDE 329 (570)
T ss_dssp -TEEEEEESSBCGGGCEEEEEEEEETTEEEEEEEEECCBCCCEEEECCCSBCCEESSCEEEEEEEEESSSSCEEEEEETT
T ss_pred -CEEEEEEcccCcccCEEEEEEEECCCCcEEEEEEEEeecCCcccccCCCccEEcCCCcEEEEEEEeeCCCCEEEEeECC
Confidence 3568999999999999999999998775543333320
Q ss_pred -------------eccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCCCCCCCCccc-ccCCceEEEEEEee
Q psy14540 199 -------------NEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGPFTFGE-LMEGVRTQVACVVQ 264 (291)
Q Consensus 199 -------------~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~-~~~g~~v~l~C~~~ 264 (291)
......|.|.++..+|+|.|+|.|.|..|.......|.|..+|.+...+... +.+|+.+.|.|.+
T Consensus 330 ~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~P~~~~~~~~~~~~~G~~v~l~C~~- 408 (570)
T 3b43_A 330 TEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECEL- 408 (570)
T ss_dssp EECCCSSSEEEEEETTEEEEEEESCCGGGCEEEEEEEEBTTBCCEEEEEECEECCCEECSCCCCEEECTTCCEEEEEEE-
T ss_pred EECCCCCcEEEEEECCEEEEEECCCCcccCEEEEEEEEeCCCEEEEEEEEEecCCCeeecCCCceeecCCCEEEEEEEE-
Confidence 0113568899999999999999999999999999999999999887766655 8899999999999
Q ss_pred cCCCCceEEEEECCEEccCC
Q psy14540 265 SGDLPLSLQWYKNGLAISQP 284 (291)
Q Consensus 265 ~~~p~~~v~W~~~~~~l~~~ 284 (291)
.|.|+|+|.|+|||.+|..+
T Consensus 409 ~g~P~p~v~W~k~g~~l~~~ 428 (570)
T 3b43_A 409 QGTPPFQVSWHKDKRELRSG 428 (570)
T ss_dssp ESSSSCCCEEEETTEECCSS
T ss_pred ecCCCCEEEEEECCEECcCC
Confidence 89999999999999998654
No 3
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Probab=100.00 E-value=4.4e-36 Score=230.79 Aligned_cols=231 Identities=24% Similarity=0.442 Sum_probs=185.6
Q ss_pred CCCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCC-CeeEeceEEeeccceEEEEEEeecCCCCCeEEEE
Q psy14540 1 SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAG-DRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQC 79 (291)
Q Consensus 1 s~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C 79 (291)
.||.|...|....+.+|+.++|.|.+.+.|.+.+.|++++..+.. ..+... .......|.|.+++..|+|.|+|
T Consensus 4 ~pP~~~~~p~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~-----~~~~~~~L~i~~v~~~d~G~Y~C 78 (284)
T 2rik_A 4 APPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMT-----LVENTATLTVLKVTKGDAGQYTC 78 (284)
T ss_dssp CCCEEEECCCCEEEETTCCEEEEEEEESSSCCEEEEEETTEECCSSSSEEEE-----EETTEEEEEESSCCGGGCEEEEE
T ss_pred CCCEEEccccceEecCCCcEEEEEEEEcCCCCEEEEEECCEECcCCCcEEEE-----EcCCEEEEEEecCCcccCEEEEE
Confidence 489999999999999999999999999888889999999998873 333221 12234679999999999999999
Q ss_pred EEeCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEecc
Q psy14540 80 TATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSS 159 (291)
Q Consensus 80 ~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~ 159 (291)
.+.+..+.....+.|.|...|. ..........+.+|+.+.|.|.+ .+.|.+.+.|++++..+..........
T Consensus 79 ~~~n~~g~~~~~~~l~V~~~p~------~~~~~~~~~~v~~g~~~~l~C~~-~g~p~~~v~W~~~~~~~~~~~~~~~~~- 150 (284)
T 2rik_A 79 YASNVAGKDSCSAQLGVQEPPR------FIKKLEPSRIVKQDEHTRYECKI-GGSPEIKVLWYKDETEIQESSKFRMSF- 150 (284)
T ss_dssp EEEETTEEEEEEEEEEEECCCE------EEECCCSEEEEETTCCEEEEEEE-ESSSCCEEEEEETTEECCCSSSEEEEE-
T ss_pred EEEECCceEEEEEEEEccCCCc------ccccCCCceEecCCceEEEEEEE-eeeCCCEEEEEECCEECcCCCcEEEEE-
Confidence 9998888888888888887652 12222334567899999999999 688999999999998876554332211
Q ss_pred CCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEec
Q psy14540 160 GEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNV 239 (291)
Q Consensus 160 ~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~ 239 (291)
......|.|.++..+|+|.|+|.+.|..+.....+.|.|..
T Consensus 151 ---------------------------------------~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~ 191 (284)
T 2rik_A 151 ---------------------------------------VESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKE 191 (284)
T ss_dssp ---------------------------------------ETTEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEEC
T ss_pred ---------------------------------------cCCEEEEEECCCCcccCEEEEEEEEcCCCceeEEEEEEEec
Confidence 11235677888888889999999998888888888999999
Q ss_pred CCCCCCCCccc-ccCCceEEEEEEeecCCCCceEEEEECCEEccCC
Q psy14540 240 PPHIGPFTFGE-LMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQP 284 (291)
Q Consensus 240 ~p~~~~~~~~~-~~~g~~v~l~C~~~~~~p~~~v~W~~~~~~l~~~ 284 (291)
+|.+...+... +.+|+.++|.|.+ .+.|++.+.|+++|..+..+
T Consensus 192 ~p~~~~~~~~~~~~~g~~v~l~C~~-~g~p~~~v~W~~~~~~~~~~ 236 (284)
T 2rik_A 192 PPVFRKKPHPVETLKGADVHLECEL-QGTPPFQVSWHKDKRELRSG 236 (284)
T ss_dssp CCBCCSCCCCEEECTTCCEEEEEEC-BSSSCCEEEEEETTEEECBT
T ss_pred CCcceeCCCcceecCCCeEEEEEEE-EecCCCEEEEEECCEECcCC
Confidence 99887766655 8899999999999 88999999999999998654
No 4
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*
Probab=100.00 E-value=1.5e-37 Score=248.78 Aligned_cols=267 Identities=25% Similarity=0.425 Sum_probs=198.5
Q ss_pred CCCcceeecceeee---ecCCcEEEEEEecCCCCCeeEEEECCeecCCC-eeEeceEEeeccceEEEEEEeec-CCCCCe
Q psy14540 1 SHPQLIYKFIQQTL---QPGPPVSLKCIATGNPTPHISWKLDGYPLAGD-RFVMGQYMSLHGDVISHVNISSV-RVEDSG 75 (291)
Q Consensus 1 s~p~~~~~~~~~~v---~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~-~~~d~G 75 (291)
++|.|...|....+ .+|+.+.|.|.+.+.|.+.|.|+|+|..+... .... ....+ .|.|.+. +.+|+|
T Consensus 4 ~~P~f~~~P~~~~~~~~~eg~~v~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~---~~~~g----~l~i~~~~~~~D~G 76 (384)
T 3kld_A 4 SGPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRY---SVVDG----SLLINNPNKTQDAG 76 (384)
T ss_dssp EEEEEEECCCCEEEETTCSCSEEEECCEEEEESCCEEEEEETTEECCC----CE---EEETT----EEEEESCCHHHHCE
T ss_pred CCCEEEeCCcceEeecCCCCCeEEEEeEecCCCCCEEEEEECCEECcCCCCccE---EEECC----EEEEcCCCCcccCE
Confidence 36889999988776 58899999999999999999999999988632 1111 11111 3566665 788999
Q ss_pred EEEEEEeCCCCce-eeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCce
Q psy14540 76 IYQCTATNRVGSQ-THSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEI 154 (291)
Q Consensus 76 ~y~C~~~~~~~~~-~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~ 154 (291)
.|+|.+.|..|.. +....+.+...+... ........+.+|+.+.|.|....+.|.+.+.|++++.++....+.
T Consensus 77 ~Y~C~A~N~~G~~~s~~~~l~v~~~~~~~------~~~~~~~~v~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~ 150 (384)
T 3kld_A 77 TYQCIATNSFGTIVSREAKLQFAYLENFK------TRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRR 150 (384)
T ss_dssp EEEEEEEETTEEEECCCEEEEEEEECCCS------CCCCCCEEEEETCCEEECCCCCSEESCEEEEEEETTEECCCSSSE
T ss_pred EEEEEEEcCcccEEecceEEEEecccccc------cCCCCceeEEcCCCeEEecCCCCCCCCeEEEEEECCCCCEeeccE
Confidence 9999999887753 344555554433211 112234678899999999987556678899999999887655544
Q ss_pred EEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCC------------------------------------ceEEE-
Q psy14540 155 TIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNH------------------------------------SSNLR- 197 (291)
Q Consensus 155 ~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~------------------------------------~~~~~- 197 (291)
..... ...|.|.++..+|+|.|+|.+.|..+.... .+.+.
T Consensus 151 ~~~~~---~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~v~~~~~~~~~~p~~~~~~~~~~~~~~G~~v~l~C 227 (384)
T 3kld_A 151 FVSQE---TGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLEC 227 (384)
T ss_dssp EECTT---TCCEEESSCCGGGCEEEEEEEEETTTTEEEECCCEEEEEEEEEECCCEEEEEEEECCSEEEEETTSCEEEEE
T ss_pred EEEcC---CCcEEEeecCHHHCceEEEEEecccccceeeCCceEEEEccCCcccccCCceeecCCCceEecCCCcEEEEE
Confidence 33322 346999999999999999999997653210 00000
Q ss_pred -------------------------EeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCCCCCCCCccc-c
Q psy14540 198 -------------------------VNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGPFTFGE-L 251 (291)
Q Consensus 198 -------------------------~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~-~ 251 (291)
.......|.|.++..+|+|.|+|.|.|..|.......|.|..+|.+....... +
T Consensus 228 ~~~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~~~~~~~~~v 307 (384)
T 3kld_A 228 FALGNPVPTILWRRADGKPIARKARRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQPNWVQIINDIHV 307 (384)
T ss_dssp EEEEESCCEEEEEETTCCCCCTTCEECTTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEEEEEECCCCEEE
T ss_pred EEeecCCCcEEEEeCCCccccccceecCCCcEEEECCCChhhCEEEEEEEEcCCCeEEEEEEEEEecCCccccCCCceEe
Confidence 00114579999999999999999999999988888889998888766555444 8
Q ss_pred cCCceEEEEEEeecCCCCceEEEEECCEEccCC
Q psy14540 252 MEGVRTQVACVVQSGDLPLSLQWYKNGLAISQP 284 (291)
Q Consensus 252 ~~g~~v~l~C~~~~~~p~~~v~W~~~~~~l~~~ 284 (291)
.+|+.+.|.|.+ .|.|.|.|.|+|||.+|...
T Consensus 308 ~~g~~v~l~C~~-~g~P~p~i~W~k~g~~l~~~ 339 (384)
T 3kld_A 308 AMEESVFWECKA-NGRPKPTYRWLKNGDPLLTR 339 (384)
T ss_dssp CTTCCEEEECEE-EEESCCEEEEEETTEECCCB
T ss_pred cCCCCEEEEeEC-CccCCCeEEEEECCEECCCC
Confidence 999999999999 89999999999999998543
No 5
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*
Probab=100.00 E-value=1.1e-36 Score=245.58 Aligned_cols=265 Identities=23% Similarity=0.419 Sum_probs=199.2
Q ss_pred CCcceee-cceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCC---CeeEeceEEeeccceEEEEEE----eecCCCC
Q psy14540 2 HPQLIYK-FIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAG---DRFVMGQYMSLHGDVISHVNI----SSVRVED 73 (291)
Q Consensus 2 ~p~~~~~-~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~i----~~~~~~d 73 (291)
||.|... +....+.+|+.++|.|.+.+.|.+.+.|+++|..+.. .+.... ... .+|.| .+++.+|
T Consensus 16 ~P~i~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~-----~~~--~~l~i~~~~~~~~~~D 88 (404)
T 3p3y_A 16 PPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMR-----RRS--GTLVIDFRSGGRPEEY 88 (404)
T ss_dssp CCCEEEECCTTCEECSSSCCCCCEEECCSSCCEEEEEETTEECCGGGCSSCBCC-----SSS--CCCBCCCTTTCCTTSS
T ss_pred CCcccccCCccEEEcCCCCEEEEEEecCCCCCeEEEEECCEEeeeecCCcceEe-----cCC--ceEEEEeccCCCCccC
Confidence 6777754 5667899999999999999889999999999987752 111110 111 22334 3788999
Q ss_pred CeEEEEEEeCCCCce-eeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEe-ccCC
Q psy14540 74 SGIYQCTATNRVGSQ-THSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLP-ILSD 151 (291)
Q Consensus 74 ~G~y~C~~~~~~~~~-~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~-~~~~ 151 (291)
+|.|+|.+.+..+.. +..+.+.|...+..+. .......+.+|+.+.|.|.+..+.|.+.+.|++++.. +...
T Consensus 89 ~G~Y~C~a~n~~g~~~s~~~~l~V~~~p~~~~------~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~ 162 (404)
T 3p3y_A 89 EGEYQCFARNKFGTALSNRIRLQVSKSPLWPK------ENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQD 162 (404)
T ss_dssp CEEEEEEEECSSCEEEEEEEEEEECCCCCCCC------CCCCCEEEETTSCEEECCCCCCCSSCCEEEEECTTSCBCCCC
T ss_pred CEEEEEEEEcCCCeEeeeeEEEEEeccCcccc------CCCCCeEEccCCcEEEEeCCCCCCCCCeEEEeCCCccccCCC
Confidence 999999999887765 4667788876653321 2223467889999999999866889999999998744 3333
Q ss_pred CceEEeccCCceEEEEEeeCCCCC-ceeEEEEEEecCCCCC-----CceEE-----------------------------
Q psy14540 152 AEITIRSSGEYTSSLSIATLSTGH-SGNYTCVASNTVASDN-----HSSNL----------------------------- 196 (291)
Q Consensus 152 ~~~~~~~~~~~~~~l~i~~~~~~d-~g~y~C~~~~~~~~~~-----~~~~~----------------------------- 196 (291)
.+..... ...|.|.++...| .|.|+|.+.|..+... ..+.+
T Consensus 163 ~~~~~~~----~~~l~i~~v~~~d~~G~Y~C~a~n~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~~~~G~ 238 (404)
T 3p3y_A 163 KRVSQGH----NGDLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGM 238 (404)
T ss_dssp SSEEECT----TSCEEESSCCSGGGSSCBEEEEECTTTCCEEECCCBCEEEECCSCCCCCCCCBSSSCSSEEEEEEETTS
T ss_pred CcEEEcC----CCcEEEEeeeeccCCcceEEEEEeccccceeccCceeEEEeccCCccccCCccccccCCCCCceEecCC
Confidence 3443332 2358999999999 5999999998765421 01111
Q ss_pred ----E--------------------------EeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCCCCCCC
Q psy14540 197 ----R--------------------------VNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGPF 246 (291)
Q Consensus 197 ----~--------------------------~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p~~~~~ 246 (291)
. .......|.|.++..+|+|.|+|.|.|..+.....+.|.|..+|.+...
T Consensus 239 ~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~ 318 (404)
T 3p3y_A 239 DLLLECIASGVPTPDIAWYKKGGDLPSDKAKFENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKAAPYWLDE 318 (404)
T ss_dssp CEEEECCBCCSSCCEEEEEETTBCCCTTTEEEEGGGTEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEEEEEEEEC
T ss_pred CEEEEEEECCCCCCcEEEEECCEECCCCcccccccCceEEEccCCHhHCEEEEEEEEeCCCcEEEEEEEEEeCCCeeecc
Confidence 0 1111568999999999999999999999998888999999988877666
Q ss_pred Cccc-ccCCceEEEEEEeecCCCCceEEEEECCEEccCC
Q psy14540 247 TFGE-LMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQP 284 (291)
Q Consensus 247 ~~~~-~~~g~~v~l~C~~~~~~p~~~v~W~~~~~~l~~~ 284 (291)
+... +.+|+.++|.|.+ .|.|.+.+.|++||..+...
T Consensus 319 ~~~~~v~~g~~~~l~C~~-~g~p~p~v~W~~~g~~~~~~ 356 (404)
T 3p3y_A 319 PKNLILAPGEDGRLVCRA-NGNPKPTVQWMVNGEPLQSA 356 (404)
T ss_dssp CCCEEECTTCCEEEECEE-EEESCCEEEEEETTEEGGGS
T ss_pred CCcceeecCCcEEEEEEc-cccCCCceEEEECCEecCCC
Confidence 5555 8899999999999 88999999999999999654
No 6
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}
Probab=100.00 E-value=7e-36 Score=240.90 Aligned_cols=258 Identities=11% Similarity=0.114 Sum_probs=173.0
Q ss_pred CcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEe
Q psy14540 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTAT 82 (291)
Q Consensus 3 p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~ 82 (291)
+.++..|..+.|.+|+++.|.|.+.+.|.+.+.|++++..+..... . ........+|.|.+++.+|+|.|+|.+.
T Consensus 49 ~~~~~~~~~v~V~~G~~v~L~C~v~g~P~p~i~W~~~~~~l~~~~~-~----~~~~~~~~sL~I~~v~~~D~G~Y~C~a~ 123 (423)
T 3qs7_E 49 SGTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPH-F----DLQNRGVVSMVILKMTETQAGEYLLFIQ 123 (423)
T ss_dssp -------CEEEECSSCCEEEEEECSCCSSCEEEEEETTEEECCCCB-C---------CEEEEEESSCCSSSCSEEEEEEE
T ss_pred CcceeccccEEEecCCcEEEEEEEEcCCCCeEEEEECCCccCccce-e----ccccceEEEEEEeecCcccCEEEEEEEE
Confidence 3556677788999999999999999999999999999877653211 1 1112233569999999999999999999
Q ss_pred CCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCc
Q psy14540 83 NRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEY 162 (291)
Q Consensus 83 ~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~ 162 (291)
|..+.....+.|.|...+.. .......+..|+.+.|.|.+ .|.|.|.+.|++++..+.........
T Consensus 124 N~~g~~~~~~~l~V~~~p~~--------~~~~p~~~~~~~~~~L~C~a-~G~P~P~i~W~k~~~~~~~~~~~~~~----- 189 (423)
T 3qs7_E 124 SEATNYTILFTVSIRNTLLY--------TLRRPYFRKMENQDALVCIS-ESVPEPIVEWVLCDSQGESCKEESPA----- 189 (423)
T ss_dssp C--CEEEEEEEEEEC-------------CEEEEEEEECSSSSCEEEEE-EESSCCEEEEEEC------------------
T ss_pred cCCCcEEEEEEEEEecCccc--------cccCCcEeccCCceEEEEEE-eeecCCeEEEEECCCCCccccccccc-----
Confidence 99888877788887643311 00111234568888999999 69999999999988754321100000
Q ss_pred eEEEEE-eeCCCCCceeEEEEEEecCCCCCC-ceEEEE-------------------------ec---------------
Q psy14540 163 TSSLSI-ATLSTGHSGNYTCVASNTVASDNH-SSNLRV-------------------------NE--------------- 200 (291)
Q Consensus 163 ~~~l~i-~~~~~~d~g~y~C~~~~~~~~~~~-~~~~~~-------------------------~~--------------- 200 (291)
..... ......|+|.|+|.|.|..|.... .+.+.+ ..
T Consensus 190 -~~~~~~~~l~~~d~G~Y~C~A~N~~G~~~~~~~~l~V~~~p~~~~~~~~v~~G~~v~L~C~~~g~~p~p~i~W~k~g~~ 268 (423)
T 3qs7_E 190 -VVKKEEKVLHELFGTDIRCCARNELGRECTRLFTIDLNQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKA 268 (423)
T ss_dssp -CEEECCSEECCCCSSCEEEEEECSSCEEEEECEEEESSSCCCSSTTEEEEETTSCEEEEEEEEESSSCCCEEEEESSSB
T ss_pred -cccccceEEecccCeEEEEEEEcCCCCcceeeEEEEEecCCccCCCceEEeCCCeEEEEEEEEcCCCCcEEEEEECCEE
Confidence 00000 111578999999999998775432 122220 00
Q ss_pred -------------------cceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCCCCCCCCc---ccccCCceEE
Q psy14540 201 -------------------YTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGPFTF---GELMEGVRTQ 258 (291)
Q Consensus 201 -------------------~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p~~~~~~~---~~~~~g~~v~ 258 (291)
....|.|.++..+|+|.|+|.|.|. .+..+.|.|..+|.+...+. ..+.+|+.+.
T Consensus 269 l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~---~~~~~~L~V~~~p~i~~~~~~~~~~v~~G~~v~ 345 (423)
T 3qs7_E 269 LEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH---PSQSALVTIVEKGFINATNSSEDYEIDQYEEFC 345 (423)
T ss_dssp CCGGGEEEEEEEETTTEEEEEEEEEESSCCTTTCEEEEEEETTE---EEEEEEEEEESSCEEEEC---CEECCCTTCCCC
T ss_pred ccccceeecccccCCceeEEEEEEEEeecCHHHCEEEEEEEecC---CCceEEEEEEeCCcceEcCCCccEEecCCCeEE
Confidence 0136999999999999999999998 66778888888876654432 2288999999
Q ss_pred EEEEeecCCCCceEEEEECCEEccCC
Q psy14540 259 VACVVQSGDLPLSLQWYKNGLAISQP 284 (291)
Q Consensus 259 l~C~~~~~~p~~~v~W~~~~~~l~~~ 284 (291)
|.|.+ .|.|.|.|+|+|||..|.+.
T Consensus 346 l~C~~-~g~P~p~i~W~k~g~~l~~~ 370 (423)
T 3qs7_E 346 FSVRF-KAYPQIRCTWTFSRKSFPCE 370 (423)
T ss_dssp EEEEE-EEESCCEEEEEETTEEEECB
T ss_pred EEEEE-EEcCCCeEEEEECCEECCCc
Confidence 99999 89999999999999999654
No 7
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}
Probab=100.00 E-value=2.3e-35 Score=237.82 Aligned_cols=262 Identities=28% Similarity=0.431 Sum_probs=196.6
Q ss_pred CCcceeecceeeeecCCcEEEEEEecC-CCCCeeEEEECCeecCCC---eeEeceEEeeccceEEEEEEeec-----CCC
Q psy14540 2 HPQLIYKFIQQTLQPGPPVSLKCIATG-NPTPHISWKLDGYPLAGD---RFVMGQYMSLHGDVISHVNISSV-----RVE 72 (291)
Q Consensus 2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~-~~~~~v~W~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~i~~~-----~~~ 72 (291)
...|...|.+..+.+|+.++|.|.+.+ .+.+.+.|+|+|..+... +... ... ..|.|.++ +.+
T Consensus 21 ~~~~~~~P~~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~-----~~~---~~l~i~~~~~~~~~~~ 92 (403)
T 3laf_A 21 SLHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILALGMDDRKQQ-----LPN---GSLLIQNILHSRHHKP 92 (403)
T ss_dssp SSEEEECCCCEEECTTCCEEECCEEECTTCCCEEEEEETTEECCTTSCTTEEE-----CTT---SCEEECSCCCBTTBCS
T ss_pred eEEEEeCCCceEEecCCcEEEEEEcCCCCCCceEEEEECCEECccCCcccEEE-----ecC---CcEEEeeeeccCCCCC
Confidence 346778899999999999999999987 677889999999988622 2111 111 12556666 678
Q ss_pred CCeEEEEEEeCCCCce--eeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccC
Q psy14540 73 DSGIYQCTATNRVGSQ--THSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILS 150 (291)
Q Consensus 73 d~G~y~C~~~~~~~~~--~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~ 150 (291)
|+|.|+|.+.+..+.. +..+.+.|..++ .....+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+..
T Consensus 93 D~G~Y~C~~~~~~~~~~~s~~~~l~v~~p~-------~~~~~~~~~~~~~G~~v~l~C~~-~~~p~~~v~W~~~~~~~~~ 164 (403)
T 3laf_A 93 DEGLYQCEASLGDSGSIISRTAKVMVAGPL-------RFLSQTESITAFMGDTVLLKCEV-IGDPMPTIHWQKNQQDLNP 164 (403)
T ss_dssp SCEEEEEEEECGGGCEEECCCEEEEECCCC-------EECSCCCCEEEETTSCEEECCCE-ECSSCCEEEEEESSSBCCC
T ss_pred cceEEEEEEEeCCCccEEEEEEEEEecCCC-------ccccCCCcEEEEcCCeEEEEEEE-cccCCCeEEEEECCEeccc
Confidence 9999999998543332 344555555432 22234456788899999999998 6889899999999987743
Q ss_pred C---CceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCC-CceEEEEe---------------------------
Q psy14540 151 D---AEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDN-HSSNLRVN--------------------------- 199 (291)
Q Consensus 151 ~---~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~-~~~~~~~~--------------------------- 199 (291)
. .+..... ...|.|..+..+|.|.|+|.+.|..+... ....+.+.
T Consensus 165 ~~~~~~~~~~~----~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~g~~~~ 240 (403)
T 3laf_A 165 IPGDSRVVVLP----SGALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAV 240 (403)
T ss_dssp CTTCCSEEECT----TSCEEECSCCGGGCEEEEEEEECSSCCCBCCCEEEEEECCCCCCEEEEEEECCCCEEEETTSCEE
T ss_pred cCCceEEEEcC----CceEEEcccccccCEEEEEEEEcCCCceeccceeEEEecCCCcccCceEecCCCceEecCCCcEE
Confidence 2 2222221 23699999999999999999999776532 22222200
Q ss_pred -------------------------------ccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCCCCCCCCc
Q psy14540 200 -------------------------------EYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGPFTF 248 (291)
Q Consensus 200 -------------------------------~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p~~~~~~~ 248 (291)
.....|.|.++..+|+|.|+|.|.|..+..+..+.|.|..+|.+...+.
T Consensus 241 l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~ 320 (403)
T 3laf_A 241 LECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGSNLLISNVTDDDSGTYTCVVTYKNENISASAELTVLVPPWFLNHPS 320 (403)
T ss_dssp ECCEEEEESCCEEEEEETTEECCCSSSSEEEETTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEEEEEECCC
T ss_pred EEEEcCCCCCCeEEEEECCeeccCCCceEEECCccEEEEeCCCHHHCEEEEEEEEcCCCceEEEEEEEEECCCcEeecCc
Confidence 0135699999999999999999999999888999999998887766655
Q ss_pred cc-ccCCceEEEEEEeecCCCCceEEEEECCEEccCC
Q psy14540 249 GE-LMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQP 284 (291)
Q Consensus 249 ~~-~~~g~~v~l~C~~~~~~p~~~v~W~~~~~~l~~~ 284 (291)
.. +.+|+.++|.|.+ .+.|.+.+.|++||..+...
T Consensus 321 ~~~~~~g~~v~l~C~~-~g~p~p~v~W~~~g~~~~~~ 356 (403)
T 3laf_A 321 NLYAYESMDIEFECAV-SGKPVPTVNWMKNGDVVIPS 356 (403)
T ss_dssp CEECCTTCCEEECCEE-EEESCCEEEEEETTEECCCS
T ss_pred ceEEecCCeEEEEEEE-eeccCCEEEEEECCEECCCC
Confidence 55 8899999999999 88899999999999988544
No 8
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}
Probab=100.00 E-value=1.9e-35 Score=257.96 Aligned_cols=266 Identities=33% Similarity=0.592 Sum_probs=214.0
Q ss_pred CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecC-CCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEE
Q psy14540 2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLA-GDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCT 80 (291)
Q Consensus 2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~ 80 (291)
||.|...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+. ...+.........+...+.|.|.+++..|+|.|+|.
T Consensus 429 ~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~ 508 (816)
T 3dmk_A 429 PPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCI 508 (816)
T ss_dssp CCEEEEECCCEEECSSSCEEEEEEEECSSCCEEEEEETTEECCSCTTEEEEEEECTTSCEEEEEEESSCCTTTCEEEEEE
T ss_pred CCceEecCcceEEcCCCCEEEEEEEecCCCCEEEEEECCEECCCCCCcccccEEecCCCcEEEEEEeeccccCCEEEEEE
Confidence 6777777777889999999999999999999999999999887 444444444444556677899999999999999999
Q ss_pred EeCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccC
Q psy14540 81 ATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSG 160 (291)
Q Consensus 81 ~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~ 160 (291)
+.+..|.......|.|...|.. .......+.+|+.+.|.|.+ .+.|.+.+.|++++..+....+.....
T Consensus 509 a~n~~g~~~~~~~l~V~~~p~~--------~~~~~~~v~~G~~v~l~C~~-~g~p~~~i~W~k~~~~l~~~~~~~~~~-- 577 (816)
T 3dmk_A 509 AKSKVGVAEHSAKLNVYGLPYI--------RQMEKKAIVAGETLIVTCPV-AGYPIDSIVWERDNRALPINRKQKVFP-- 577 (816)
T ss_dssp EEETTEEEEEEEEEEECSSCEE--------CCCCCEEEETTCCEEEECCE-ECSSEEEEEEEETTEESCCSTTEEECT--
T ss_pred EEECCCeEEEEEEEEEecCCee--------EccCCeEEecCCeEEEEEEe-cCCCCCEEEEEECCeEcccCCceEEec--
Confidence 9999888888888888765411 22334667899999999999 688889999999999987766555443
Q ss_pred CceEEEEEeeCC-CCCceeEEEEEEecCCCCCC-ceEEEE----------------------------------------
Q psy14540 161 EYTSSLSIATLS-TGHSGNYTCVASNTVASDNH-SSNLRV---------------------------------------- 198 (291)
Q Consensus 161 ~~~~~l~i~~~~-~~d~g~y~C~~~~~~~~~~~-~~~~~~---------------------------------------- 198 (291)
...|.|.++. ..|.|.|+|.+.|..|.... .+.+.+
T Consensus 578 --~~~l~i~~v~~~~d~G~Y~C~a~n~~g~~~~~~~~v~v~~~p~~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~i~W~ 655 (816)
T 3dmk_A 578 --NGTLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWT 655 (816)
T ss_dssp --TSEEEESSCCHHHHCEEEEEEEEESSSCEEEEEEEEEEECCCCCBCCCCCSSCEESSCEEEEEEBCCCSSSCCEEEEE
T ss_pred --CCeEEEEecCccccCEEEEEEEEECCCceeeeeEEEEEecCCccccccccccccCCCCeEEEEEEEeCCCCCCEEEEE
Confidence 2368999997 58999999999998774321 122210
Q ss_pred -----------------eccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCCCCCCCCccc-ccCCceEEEE
Q psy14540 199 -----------------NEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGPFTFGE-LMEGVRTQVA 260 (291)
Q Consensus 199 -----------------~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~-~~~g~~v~l~ 260 (291)
......|.|.++..+|+|.|+|.|.|..|....++.|.|..+|.+...+... +.+|+.++|.
T Consensus 656 ~~g~~l~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~P~~~~~~~~~~v~~G~~v~l~ 735 (816)
T 3dmk_A 656 LDGQAISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVYVPPRWILEPTDKAFAQGSDAKVE 735 (816)
T ss_dssp ETTBCCCGGGTCEEEEETTTEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECEEEEEEEEECCCCEEEETTCCEEEE
T ss_pred ECCeEcCCCCCeeEEEcCCCeeEEEEccCChhhCEEEEEEEEeCCccEEEEEEEEEEeCCceeeecccceecCCCcEEEE
Confidence 0114679999999999999999999999988889999999988876665555 8899999999
Q ss_pred EEeecCCCCceEEEEECCEEc
Q psy14540 261 CVVQSGDLPLSLQWYKNGLAI 281 (291)
Q Consensus 261 C~~~~~~p~~~v~W~~~~~~l 281 (291)
|.+ .|.|.|.|+|++++..+
T Consensus 736 C~~-~g~P~p~i~W~k~~~~~ 755 (816)
T 3dmk_A 736 CKA-DGFPKPQVTWKKAVGDT 755 (816)
T ss_dssp CEE-EEESCCEEECCEECSSS
T ss_pred EEE-ecCCCCeEEEEecCCCC
Confidence 999 88999999999987554
No 9
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Probab=100.00 E-value=2.1e-35 Score=236.86 Aligned_cols=269 Identities=21% Similarity=0.375 Sum_probs=199.7
Q ss_pred CCcceeecce-eeeecCCcEEEEEEecCCCCCeeEEEE-CCeecCCC-eeEeceEEeeccceEEEEEEeecCCCC-----
Q psy14540 2 HPQLIYKFIQ-QTLQPGPPVSLKCIATGNPTPHISWKL-DGYPLAGD-RFVMGQYMSLHGDVISHVNISSVRVED----- 73 (291)
Q Consensus 2 ~p~~~~~~~~-~~v~~g~~v~l~C~~~~~~~~~v~W~~-~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~d----- 73 (291)
+|.|+..|.. ..+.+|+.++|.|.+.+.|.+.+.|++ +|..+... .... . . .+ .+|.|.+++..|
T Consensus 3 ~P~f~~~p~~~~~~~~G~~v~l~C~~~g~p~p~v~W~k~~g~~~~~~~~~~~---~-~-~~--~~L~i~~~~~~d~~~~~ 75 (388)
T 2v5m_A 3 GPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQ---I-S-SD--GKLVFPPFRAEDYRQEV 75 (388)
T ss_dssp EEEEEECCCSEEEEETTTCEEEECEEEEESCCEEEEEETTSCBCCCBTTTBE---E-C-ST--TEEEECCCCGGGCCHHH
T ss_pred CCchhhCCCceEEEEcCccEEEEEECCCCCCCEEEEEcCCCCccccCCCceE---E-c-CC--ceEEecccChhhccccc
Confidence 7899988876 457899999999999988899999999 78776521 1110 1 1 11 248999999987
Q ss_pred -CeEEEEEEeCCCCce-eeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCC---CceeEEeECCEec
Q psy14540 74 -SGIYQCTATNRVGSQ-THSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDP---PLTISWLKNGLPI 148 (291)
Q Consensus 74 -~G~y~C~~~~~~~~~-~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p---~~~~~W~~~~~~~ 148 (291)
+|.|+|.+.+..|.. +..+.+.+...+... .......+.+|+.+.|.|.+. +.+ .+.+.|++++..+
T Consensus 76 d~G~Y~C~a~n~~g~~~s~~~~v~v~~~p~~~-------~~~~~~~v~~G~~v~l~C~~~-~~~~~~~~~v~W~~~~~~~ 147 (388)
T 2v5m_A 76 HAQVYACLARNQFGSIISRDVHVRAVVAQYYE-------ADVNKEHVIRGNSAVIKCLIP-SFVADFVEVVSWHTDEEEN 147 (388)
T ss_dssp HEEEEEEEEEETTEEEECCCEEEEEECCCCCC-------CBCCCEEEETTSCEEECCBCC-TTTTTTEEEEEEEETTCCE
T ss_pred cCceEEEEEEccCCeEEecceEEEEccccccc-------cCccceeeecCCcEEEEEECc-CCCCCCcceEEEEeCCCcc
Confidence 999999999887753 456667776554322 223446788999999999984 443 3789999998765
Q ss_pred cC-----CCceEEeccCCceEEEEEeeCCCCCc-eeEEEEEEecCCCCC------CceEEE-------------------
Q psy14540 149 LS-----DAEITIRSSGEYTSSLSIATLSTGHS-GNYTCVASNTVASDN------HSSNLR------------------- 197 (291)
Q Consensus 149 ~~-----~~~~~~~~~~~~~~~l~i~~~~~~d~-g~y~C~~~~~~~~~~------~~~~~~------------------- 197 (291)
.. ..+..... ...|.|.++..+|. |.|+|.+.|..+... ..+.+.
T Consensus 148 ~~~~~~~~~~~~~~~----~~~L~i~~v~~~d~~G~Y~C~~~n~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~ 223 (388)
T 2v5m_A 148 YFPGAEYDGKYLVLP----SGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLE 223 (388)
T ss_dssp ECSSSCBTTTEEECT----TSCEEESSCCGGGGGCCEEEEEEETTTCCEEECSSCBCEEEECCCSCEEEECCSSCCCCEE
T ss_pred cccccCCCCcEEEcc----CCcEEEecCCccccCeeEEEEeccCCCCceeeccccceEEEecCCcCCCCcCccccCCceE
Confidence 32 12232222 23699999999999 999999998753211 011110
Q ss_pred -----------------------------------------EeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEE
Q psy14540 198 -----------------------------------------VNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLR 236 (291)
Q Consensus 198 -----------------------------------------~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~ 236 (291)
.......|.|.++..+|+|.|+|.|.|..+..+..+.|.
T Consensus 224 v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~ 303 (388)
T 2v5m_A 224 LMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLT 303 (388)
T ss_dssp EETTSCEEECCCCEEESCCEEEEEEECTTSSCEEECCCSSSEEEETTEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEE
T ss_pred EeeCCcEEEEEECCCCCCCEEEEEecCCCCcccccccccCceecccCEEEECcCCHHHCeEEEEEEecCCCceeEEEEEE
Confidence 000135789999999999999999999999888888999
Q ss_pred EecCCCCCCCCccc-ccCCceEEEEEEeecCCCCceEEEEECCEEccCCeeeEee
Q psy14540 237 VNVPPHIGPFTFGE-LMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQPDISITL 290 (291)
Q Consensus 237 v~~~p~~~~~~~~~-~~~g~~v~l~C~~~~~~p~~~v~W~~~~~~l~~~~~~~~~ 290 (291)
|..+|.+...+... +.+|+.++|.|.+ .|.|.+.|.|++||..+...+..+.|
T Consensus 304 V~~~p~~~~~~~~~~v~~g~~~~l~C~~-~g~p~p~i~W~~~g~~i~~~~~~L~i 357 (388)
T 2v5m_A 304 VTAPLSAKIDPPTQTVDFGRPAVFTCQY-TGNPIKTVSWMKDGKAIGHSESVLRI 357 (388)
T ss_dssp EEEEEEEEEESSEEEECTTSCEEEEEEE-EEECCCEEEEEETTEECSCCSSEEEE
T ss_pred EeCCCccccCCCcEEecCCCCEEEEEEe-ccccCCeEEEEECCEECccCCCEEEE
Confidence 98887765555444 8999999999999 88999999999999999776655554
No 10
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4
Probab=100.00 E-value=3.2e-36 Score=242.16 Aligned_cols=269 Identities=21% Similarity=0.301 Sum_probs=200.7
Q ss_pred CCCcceeecceeeeecCCcEEEEEEecC-CCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEE
Q psy14540 1 SHPQLIYKFIQQTLQPGPPVSLKCIATG-NPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQC 79 (291)
Q Consensus 1 s~p~~~~~~~~~~v~~g~~v~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C 79 (291)
.||.|...|....+.+|+.++|.|.+.+ .|.+.+.|+++|..+...... ...... ..+|.|.+++.+|+|.|+|
T Consensus 5 ~~P~~~~~p~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~---~~~~~~--~~~L~i~~~~~~D~G~Y~C 79 (395)
T 1bih_A 5 KYPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHN---AALRKD--EGSLVFLRPQASDEGHYQC 79 (395)
T ss_dssp CCCEECCCCSEEEEETTSCEEECCCEESCCSSCEEEEEESSSBCCTTTTT---EEECTT--SCCEEESSCCGGGCEEEEE
T ss_pred CCCEeecCCCceEEeCCCEEEEEEEEecCCCCceEEEEECCcCcccccce---EEEecC--CceEEEecCCCCCCcEEEE
Confidence 4899999999999999999999999998 888999999999887732210 011111 2359999999999999999
Q ss_pred EEeCCCCcee-eeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECC---EeccC----C
Q psy14540 80 TATNRVGSQT-HSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNG---LPILS----D 151 (291)
Q Consensus 80 ~~~~~~~~~~-~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~---~~~~~----~ 151 (291)
.+.+..+... ..+.+.+...+.++ . .+....+.+|+.+.|.|.+..+.|.+.+.|++++ .+... .
T Consensus 80 ~a~n~~g~~~s~~~~l~v~~~~~p~---~----~~~~~~~~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~ 152 (395)
T 1bih_A 80 FAETPAGVASSRVISFRKTYLIASP---A----KTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFD 152 (395)
T ss_dssp EEEETTEEEECCCEEEEEEEEECCC---C----EEEEECCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCC
T ss_pred EEEeCCCeEEeEEEEEEEEEeecCC---c----CCcceeeeeCCcEEEEecCCCCCCCCeEEEEecCCCcCccccccccc
Confidence 9998766543 33555554432211 1 1234567799999999996568889999999986 22111 2
Q ss_pred CceEEeccCCceEEEEEeeCCCCCce---eEEEEEEecCCCCCCceEE----------------------------E---
Q psy14540 152 AEITIRSSGEYTSSLSIATLSTGHSG---NYTCVASNTVASDNHSSNL----------------------------R--- 197 (291)
Q Consensus 152 ~~~~~~~~~~~~~~l~i~~~~~~d~g---~y~C~~~~~~~~~~~~~~~----------------------------~--- 197 (291)
.+..... ...|.|..+...|.| .|+|.+.|..+........ .
T Consensus 153 ~~~~~~~----~~~L~i~~v~~~d~G~~~~Y~C~a~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~G~ 228 (395)
T 1bih_A 153 RRITAGP----DGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGD 228 (395)
T ss_dssp TTEEECT----TSCEEEEEECGGGCCSSEEEEEEEECTTCSSCEEEEEEEECCCBCCSSCCCCCCEEEEECCSEEEETTS
T ss_pred ccEEEcC----CCcEEEEEEeeccCCCceEEEEEEEecccceEEEeeeEEecccccccccccCCcCceecCCceEEECCC
Confidence 2333322 235999999999999 9999999988764322111 0
Q ss_pred ------------------------Ee------------ccceEEEEeeeecCCCeeEEEEeeeCCccCCc-eeEEEEecC
Q psy14540 198 ------------------------VN------------EYTSSLSIATLSTGHSGNYTCVASNTVASDNH-SSNLRVNVP 240 (291)
Q Consensus 198 ------------------------~~------------~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~-~~~l~v~~~ 240 (291)
+. .....|.|.++..+|+|.|+|.|.|..+.... .+.|.|..+
T Consensus 229 ~v~l~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~~~ 308 (395)
T 1bih_A 229 VTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSA 308 (395)
T ss_dssp CEEEEEEEECSSCCCCEEEETTEECCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSSCEEEEEEEEEEEE
T ss_pred cEEEEEEeccCCCCeEEEEECCEEcCCCCceeEEEEecCCCceEEEccCChhhCEEEEEEEEeCCCCceEEEEEEEEEcC
Confidence 00 00127999999999999999999999877555 889999988
Q ss_pred CCCCCCCcc-c-ccCCceEEEEEEeecCCCCceEEEEECCEEccCCee
Q psy14540 241 PHIGPFTFG-E-LMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQPDI 286 (291)
Q Consensus 241 p~~~~~~~~-~-~~~g~~v~l~C~~~~~~p~~~v~W~~~~~~l~~~~~ 286 (291)
|.+...+.. . +.+|+.++|.|.+ .|.|.|.+.|+++|..+..+.+
T Consensus 309 P~~~~~~~~~~~~~~g~~~~l~C~~-~g~p~p~v~W~~~g~~~~~~~~ 355 (395)
T 1bih_A 309 PKYEQKPEKVIVVKQGQDVTIPCKV-TGLPAPNVVWSHNAKPLSGGRA 355 (395)
T ss_dssp EEEEECCCSEEEECTTSCEEEECEE-EEESCCCCEEEETTEECCSSSE
T ss_pred CccccCCCcceEecCCCeEEEEEEE-CcccCCeeEEEECCEECCCCce
Confidence 888776665 3 8999999999999 7899999999999999976543
No 11
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}
Probab=100.00 E-value=2.9e-35 Score=228.36 Aligned_cols=238 Identities=25% Similarity=0.458 Sum_probs=170.0
Q ss_pred CCCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCC-CCCeEEEE
Q psy14540 1 SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRV-EDSGIYQC 79 (291)
Q Consensus 1 s~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-~d~G~y~C 79 (291)
.||.|...|.+..+.+|+.++|.|.+.+.|.+.+.|++++..+...++.... ......+.|.|.+++. .|+|.|+|
T Consensus 5 ~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~i~W~k~g~~i~~~~~~~~~---~~~~~~~~L~i~~~~~~~D~G~Y~C 81 (304)
T 2yd9_A 5 EPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIE---FDESAGAVLRIQPLRTPRDENVYEC 81 (304)
T ss_dssp CCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEC-------CTTEEEEE---ETTTTEEEEEECSCCTTTTCSEEEE
T ss_pred cCCeeeecCCceEecCCCeEEEEEEEEEeCCCeEEEEECCEECCCCceEEEE---ecCCCceEEEEecccccCCCeEEEE
Confidence 3899999999999999999999999998888999999999887654433211 1222346799999998 99999999
Q ss_pred EEeCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCce-EEec
Q psy14540 80 TATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEI-TIRS 158 (291)
Q Consensus 80 ~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~-~~~~ 158 (291)
.+.+..+.....+.|.|...+..+.........+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+...... ....
T Consensus 82 ~a~n~~g~~~~~~~l~V~~~~~~p~~~p~i~~~~~~~~v~~g~~v~l~C~~-~g~p~~~v~W~k~~~~~~~~~~~~~~~~ 160 (304)
T 2yd9_A 82 VAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAA-SGNPDPEITWFKDFLPVDPSASNGRIKQ 160 (304)
T ss_dssp EEECSSCEECCEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEECCEE-ECSSCCEEEEEETTEECCGGGGTTSEEE
T ss_pred EEECCCCeEEEEEEEEEeccccCCCCCCeeecCCccEEEeCCCeEEEEEEC-ccCCCCeEEEEECCEECcCCCCcceEEe
Confidence 999988888888889998764333222233344556778899999999999 68899999999999887543210 0000
Q ss_pred cCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCC-ceeEEEE
Q psy14540 159 SGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDN-HSSNLRV 237 (291)
Q Consensus 159 ~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~-~~~~l~v 237 (291)
.....|.|.++..+|+|.|+|.|.|..+... ....+.|
T Consensus 161 -----------------------------------------~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~v 199 (304)
T 2yd9_A 161 -----------------------------------------LRSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYV 199 (304)
T ss_dssp -----------------------------------------CTTSCEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEE
T ss_pred -----------------------------------------CCCeEEEEccCCcccCEEEEEEEEeCCCCEEeccEEEEE
Confidence 0123577777777788888888887765432 2234444
Q ss_pred e---cCCCCCCCCccc-ccCCceEEEEEEeecCCCCceEEEEECCEEccCC
Q psy14540 238 N---VPPHIGPFTFGE-LMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQP 284 (291)
Q Consensus 238 ~---~~p~~~~~~~~~-~~~g~~v~l~C~~~~~~p~~~v~W~~~~~~l~~~ 284 (291)
. .+|.+...+... +.+|+.++|.|.+ .|.|.|.|.|+++|..+...
T Consensus 200 ~~~~~~P~~~~~~~~~~v~~G~~v~l~C~~-~g~p~p~v~W~~~~~~l~~~ 249 (304)
T 2yd9_A 200 RVQNVAPRFSILPMSHEIMPGGNVNITCVA-VGSPMPYVKWMQGAEDLTPE 249 (304)
T ss_dssp ECCCEEEEEEECCCCBCCCTTCCEEEEEEE-EEESCCEEEEEETTEECSCS
T ss_pred EeeccCCcEEecCCceEEcCCCeEEEEEEE-eeeCCCEEEEEECCEECCCc
Confidence 3 345555444444 8999999999999 88899999999999998654
No 12
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A
Probab=100.00 E-value=1.8e-36 Score=242.63 Aligned_cols=264 Identities=23% Similarity=0.381 Sum_probs=199.9
Q ss_pred CCcceeecceeee---ecCCcEEEEEEecCCCCCeeEEEECCeecCCC---eeEeceEEeeccceEEEEEEeecCC-CCC
Q psy14540 2 HPQLIYKFIQQTL---QPGPPVSLKCIATGNPTPHISWKLDGYPLAGD---RFVMGQYMSLHGDVISHVNISSVRV-EDS 74 (291)
Q Consensus 2 ~p~~~~~~~~~~v---~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~i~~~~~-~d~ 74 (291)
+|.|...|....+ .+|+.++|.|.+.+.|.+.+.|+++|..+... ++.. . + ..|.|.++.. .|+
T Consensus 4 ~P~~~~~p~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~k~g~~~~~~~~~~~~~-----~-~---~~L~i~~~~~~~D~ 74 (382)
T 1cs6_A 4 GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRL-----V-A---GDLVISNPVKAKDA 74 (382)
T ss_dssp EEEEEECCCCEEEETTCSCCEEEECCEEEEESCCEEEEEETTEECCCSTTSSEEE-----E-T---TEEEEESCCHHHHC
T ss_pred CCEEEECCCcEEEecCCCCCcEEEEEEecCCCCCEEEEEECCEECCcCCCccEEe-----e-C---CeEEEecccccccC
Confidence 7899999988776 78999999999998888999999999988622 2211 1 1 2488999987 999
Q ss_pred eEEEEEEeCCCCce-eeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccC--C
Q psy14540 75 GIYQCTATNRVGSQ-THSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILS--D 151 (291)
Q Consensus 75 G~y~C~~~~~~~~~-~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~--~ 151 (291)
|.|+|.+.+..|.. +....+.|...+..+ ........+.+|+.+.|.|.+..+.|.+.+.|++++.++.. .
T Consensus 75 G~Y~C~a~n~~g~~~s~~~~l~v~~~~~~~------~~~~~~~~v~~G~~v~l~C~~~~~~p~~~i~W~~~~~~~~~~~~ 148 (382)
T 1cs6_A 75 GSYQCVATNARGTVVSREASLRFGFLQEFS------AEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPAD 148 (382)
T ss_dssp EEEEEEEEETTEEEECCCEEEEEEEECCCC------SSCCCCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCCCC
T ss_pred EEEEEEEEcCCcEEEecceEEEeecccccc------ccCCCceEEecCCcEEEEeCCCCCCCCcEEEEEECCCccccccC
Confidence 99999999877653 334566666544221 12234567889999999999756778899999999876432 2
Q ss_pred CceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCC-----ceEEE-----------------------------
Q psy14540 152 AEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNH-----SSNLR----------------------------- 197 (291)
Q Consensus 152 ~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~-----~~~~~----------------------------- 197 (291)
.+..... ....|.|.++..+|.|.|+|.+.|..+.... ...+.
T Consensus 149 ~~~~~~~---~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~s~~~~l~v~~~~~~~~~P~~~~~~~~~~~~~~G~~v 225 (382)
T 1cs6_A 149 GRRFVSQ---TTGNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMV 225 (382)
T ss_dssp SSEEECT---TTCCEEESSCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCCCCEEEEEEECCCSEEEEETTCCE
T ss_pred ceEEEec---CceEEEEEeeCcccCeeEEEEEEEccccccceeEccceeeccchhhcccCCCceeccCCCceEEeCCCeE
Confidence 2222221 1346999999999999999999987632110 00000
Q ss_pred --------------------------EeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCCCCCCCCccc-
Q psy14540 198 --------------------------VNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGPFTFGE- 250 (291)
Q Consensus 198 --------------------------~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~- 250 (291)
.......|.|.++..+|+|.|+|.|.|..+.....+.|.|..+|.+...+...
T Consensus 226 ~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~ 305 (382)
T 1cs6_A 226 TLECFAFGNPVPQIKWRKLDGSQTSKWLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHAQPDWLDVITDTE 305 (382)
T ss_dssp EEECEEEEESCCEEEEEECCSCCSCCCSBSSSEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEEEEEECCCCEE
T ss_pred EEEEEEccCCCCEEEEEECCcccccEEecCCcEEEEccCChhhCEEEEEEEEcCCCeEEEEEEEEEecCCCcccCCCccE
Confidence 00125678999999999999999999999888888899998888776555444
Q ss_pred ccCCceEEEEEEeecCCCCceEEEEECCEEccCC
Q psy14540 251 LMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQP 284 (291)
Q Consensus 251 ~~~g~~v~l~C~~~~~~p~~~v~W~~~~~~l~~~ 284 (291)
+.+|+.++|.|.+ .|.|.+.|.|+++|..+...
T Consensus 306 ~~~g~~~~l~C~~-~g~p~p~v~W~~~g~~~~~~ 338 (382)
T 1cs6_A 306 ADIGSDLRWSCVA-SGKPRPAVRWLRDGQPLASQ 338 (382)
T ss_dssp EETTCCEEEECEE-EEESCCEEEEEETTEECCCC
T ss_pred EcCCCeEEEEEEe-eeecCCEEEEEECCEECCCC
Confidence 8999999999999 88999999999999998654
No 13
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}
Probab=100.00 E-value=8.6e-34 Score=247.62 Aligned_cols=263 Identities=30% Similarity=0.514 Sum_probs=202.8
Q ss_pred CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEE
Q psy14540 2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTA 81 (291)
Q Consensus 2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~ 81 (291)
||.+...+....+.+|++++|.|.+.+.|.+.+.|+++|..+.... ..|.|.+++.+|+|.|+|.+
T Consensus 343 ~~~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~~~~~~--------------~~L~i~~v~~~d~G~Y~C~a 408 (816)
T 3dmk_A 343 PLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSE--------------SVLRIESVKKEDKGMYQCFV 408 (816)
T ss_dssp EEEEEEESSEEECCTTSCEEEEEEEEEECCCEEEEEETTEECSCCS--------------SEEEESSCCGGGCEEEEEEE
T ss_pred CCceeeCCCceEecCCCCEEEEEEEeccCCCEEEEEECCEECCCCC--------------CEEEEcCCCHHHCEEEEEEE
Confidence 3556667778889999999999999988899999999998876321 24889999999999999999
Q ss_pred eCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEe----
Q psy14540 82 TNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIR---- 157 (291)
Q Consensus 82 ~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~---- 157 (291)
.+..+.......+.|.....+| .....+....+.+|+.+.|.|.+ .+.|.+.+.|+++|..+....+....
T Consensus 409 ~n~~g~~~~~~~l~v~~~~~~p----~i~~~~~~~~v~~G~~v~L~C~~-~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~ 483 (816)
T 3dmk_A 409 RNDRESAEASAELKLGGRFDPP----VIRQAFQEETMEPGPSVFLKCVA-GGNPTPEISWELDGKKIANNDRYQVGQYVT 483 (816)
T ss_dssp ECSSCEEEECCEEECCCSSCCC----EEEEECCCEEECSSSCEEEEEEE-ECSSCCEEEEEETTEECCSCTTEEEEEEEC
T ss_pred ECCCCcEEEEEEEEEccccCCC----ceEecCcceEEcCCCCEEEEEEE-ecCCCCEEEEEECCEECCCCCCcccccEEe
Confidence 9888877777777765433222 11222344678899999999998 68999999999999998776655432
Q ss_pred ccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEec-------------------------------------
Q psy14540 158 SSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNE------------------------------------- 200 (291)
Q Consensus 158 ~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~------------------------------------- 200 (291)
..+.....|.|..+..+|.|.|+|.+.|..|.......+.+..
T Consensus 484 ~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~k~ 563 (816)
T 3dmk_A 484 VNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLPYIRQMEKKAIVAGETLIVTCPVAGYPIDSIVWERD 563 (816)
T ss_dssp TTSCEEEEEEESSCCTTTCEEEEEEEEETTEEEEEEEEEEECSSCEECCCCCEEEETTCCEEEECCEECSSEEEEEEEET
T ss_pred cCCCcEEEEEEeeccccCCEEEEEEEEECCCeEEEEEEEEEecCCeeEccCCeEEecCCeEEEEEEecCCCCCEEEEEEC
Confidence 2333456799999999999999999999887655444443110
Q ss_pred -------------cceEEEEeeee-cCCCeeEEEEeeeCCcc-CCceeEEEEecCCCCCCCCcc--cccCCceEEEEEEe
Q psy14540 201 -------------YTSSLSIATLS-TGHSGNYTCVASNTVAS-DNHSSNLRVNVPPHIGPFTFG--ELMEGVRTQVACVV 263 (291)
Q Consensus 201 -------------~~~~l~i~~~~-~~~~g~y~C~~~~~~~~-~~~~~~l~v~~~p~~~~~~~~--~~~~g~~v~l~C~~ 263 (291)
...+|.|.++. ..|+|.|+|.|.|..+. .+..+.+.|..+|.+...... .+.+|+.++|.|.+
T Consensus 564 ~~~l~~~~~~~~~~~~~l~i~~v~~~~d~G~Y~C~a~n~~g~~~~~~~~v~v~~~p~~~~~~~~~~~~~~G~~v~L~C~~ 643 (816)
T 3dmk_A 564 NRALPINRKQKVFPNGTLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHCSV 643 (816)
T ss_dssp TEESCCSTTEEECTTSEEEESSCCHHHHCEEEEEEEEESSSCEEEEEEEEEEECCCCCBCCCCCSSCEESSCEEEEEEBC
T ss_pred CeEcccCCceEEecCCeEEEEecCccccCEEEEEEEEECCCceeeeeEEEEEecCCccccccccccccCCCCeEEEEEEE
Confidence 14678888887 58999999999999864 455778888888776554332 28899999999999
Q ss_pred ecCCCCceEEEEECCEEccC
Q psy14540 264 QSGDLPLSLQWYKNGLAISQ 283 (291)
Q Consensus 264 ~~~~p~~~v~W~~~~~~l~~ 283 (291)
..+.+++.|.|++||+.+..
T Consensus 644 ~~~~~~~~i~W~~~g~~l~~ 663 (816)
T 3dmk_A 644 PGGDLPLNIDWTLDGQAISE 663 (816)
T ss_dssp CCSSSCCEEEEEETTBCCCG
T ss_pred eCCCCCCEEEEEECCeEcCC
Confidence 44555669999999998853
No 14
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Probab=100.00 E-value=9.4e-33 Score=235.12 Aligned_cols=246 Identities=20% Similarity=0.373 Sum_probs=188.4
Q ss_pred eeeeecCCcEEEEEEecCCCCCeeEEEECCeecCC-CeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCc-e
Q psy14540 11 QQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAG-DRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGS-Q 88 (291)
Q Consensus 11 ~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~-~ 88 (291)
...+..|+.+.|.|.+.+.+ +.+.|+++|..+.. .++... .. ...|.|.+++.+|+|.|+|.+.+..|. .
T Consensus 298 ~~~~~~g~~v~l~C~~~~~p-~~v~W~~~g~~l~~~~~~~~~-----~~--~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~ 369 (642)
T 1e07_A 298 SNPVEDEDAVALTCEPEIQN-TTYLWWVNNQSLPVSPRLQLS-----ND--NRTLTLLSVTRNDVGPYECGIQNELSVDH 369 (642)
T ss_pred ceeEecCCcEEEEEECCCCC-ccEEEEECCccCCCcCCEEEe-----CC--CCEEEEeccCcccCeeEEEEEeCCCCCcc
Confidence 34556688899999998865 68999999988762 232221 11 246999999999999999999988775 3
Q ss_pred eeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEE
Q psy14540 89 THSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSI 168 (291)
Q Consensus 89 ~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i 168 (291)
+..+.|.|...|..+. ..+....+.+|+.+.|.|.+ .+.|.+.+.|+++|..+.. ...|.|
T Consensus 370 s~~~~l~V~~~p~~~~------~~~~~~~~~~g~~~~l~C~~-~g~p~~~i~W~~~g~~~~~------------~~~L~i 430 (642)
T 1e07_A 370 SDPVILNVLYGPDDPT------ISPSYTYYRPGVNLSLSCHA-ASNPPAQYSWLIDGNIQQH------------TQELFI 430 (642)
T ss_pred eeeEEEEEEcCCCCCe------ecCCceEecCCCcEEEEEEc-CccCCCeEEEEECCEEcCC------------CceEEE
Confidence 4567788876553321 12334577899999999999 6899999999999987743 235899
Q ss_pred eeCCCCCceeEEEEEEecCCCCCCce--EEEE------------------------------------------------
Q psy14540 169 ATLSTGHSGNYTCVASNTVASDNHSS--NLRV------------------------------------------------ 198 (291)
Q Consensus 169 ~~~~~~d~g~y~C~~~~~~~~~~~~~--~~~~------------------------------------------------ 198 (291)
..+...|.|.|+|.|.|..|...... .+.+
T Consensus 431 ~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~v~v~~~~~~p~i~~~~~~~v~~g~~v~l~C~~~~~~~~i~W~~~g~~l~~~ 510 (642)
T 1e07_A 431 SNITEKNSGLYTCQANNSASGHSRTTVKTITVSAELPKPSISSNNSKPVEDKDAVAFTCEPEAQNTTYLWWVNGQSLPVS 510 (642)
T ss_pred ccCChhhCeEEEEEEEcCCCCCcccceEEEEEeccCCCceEecCCceeecCCCeEEEEEECCCCCcEEEEEECCEeCCCC
Confidence 99999999999999999987654432 2211
Q ss_pred -----eccceEEEEeeeecCCCeeEEEEeeeCCccC-CceeEEEEecCCC-CCCCCccc-ccCCceEEEEEEeecCCCCc
Q psy14540 199 -----NEYTSSLSIATLSTGHSGNYTCVASNTVASD-NHSSNLRVNVPPH-IGPFTFGE-LMEGVRTQVACVVQSGDLPL 270 (291)
Q Consensus 199 -----~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~-~~~~~l~v~~~p~-~~~~~~~~-~~~g~~v~l~C~~~~~~p~~ 270 (291)
......|.|.++..+|+|.|+|.|.|..|.. +..+.|.|..+|. +...+... +.+|+.++|.|.+ .|.|++
T Consensus 511 ~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~-~g~p~p 589 (642)
T 1e07_A 511 PRLQLSNGNRTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPDTPIISPPDSSYLSGANLNLSCHS-ASNPSP 589 (642)
T ss_pred CcEEEcCCCcEEEEeecChhcCceEEEEeEcCCCCccCCCEEEEEEeCCCcceecCCceeEEcCCcEEEEEEe-ccCCCC
Confidence 0114589999999999999999999998764 4578888886554 33333333 8999999999999 899999
Q ss_pred eEEEEECCEEccCC
Q psy14540 271 SLQWYKNGLAISQP 284 (291)
Q Consensus 271 ~v~W~~~~~~l~~~ 284 (291)
.|+|++||.++...
T Consensus 590 ~v~W~~~g~~i~~~ 603 (642)
T 1e07_A 590 QYSWRINGIPQQHT 603 (642)
T ss_pred eEEEEECCEECccC
Confidence 99999999998754
No 15
>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}
Probab=100.00 E-value=6.6e-33 Score=230.62 Aligned_cols=274 Identities=19% Similarity=0.335 Sum_probs=184.8
Q ss_pred ceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCe--ecCCCee--------EeceEEeeccceEEEEEEeecCCCCC
Q psy14540 5 LIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGY--PLAGDRF--------VMGQYMSLHGDVISHVNISSVRVEDS 74 (291)
Q Consensus 5 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~--~~~~~~~--------~~~~~~~~~~~~~~~l~i~~~~~~d~ 74 (291)
++..|..+.+.+|++++|.|.+.+.+.+.+.|++++. .+....+ ...+.........+.|.|.+++.+|+
T Consensus 3 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~ 82 (523)
T 2rcj_C 3 VLTQPPSASGTPGQRVTISCTGTSSGSITVNWYQQLPGMAPKLLIYRDAMRPSGVPTRFSGSKSGTSASLAISGLEAEDE 82 (523)
T ss_pred ccccCCceEEecCCcEEEEEEEeccCCceEEEEEeCCCCCcEEEEEeccccCcccCCcEEEecCCCEEEEEECCCChhhC
Confidence 3455778899999999999999888888999999742 1110000 00111122234456899999999999
Q ss_pred eEEEEEEeCCCCc---eeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCC--ceeEEeECCEecc
Q psy14540 75 GIYQCTATNRVGS---QTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPP--LTISWLKNGLPIL 149 (291)
Q Consensus 75 G~y~C~~~~~~~~---~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~--~~~~W~~~~~~~~ 149 (291)
|.|+|.+.+..+. ....+.|.|...+..++. ....+....+.+|+.+.|.|.+. +.|+ +.+.|+++|..+.
T Consensus 83 G~Y~C~a~n~~g~~~~~~~~~~l~V~~~~~~~P~---~~~~~~~~~~~~g~~v~l~C~~~-g~~p~~~~v~W~k~g~~l~ 158 (523)
T 2rcj_C 83 SDYYCASWNSSDNSYVFGTGTKVTVLGQPKANPT---VTLFPPSSEELQANKATLVCLIS-DFYPGAVTVAWKADGSPVK 158 (523)
T ss_pred EEEEEEEccCCCccccccCceEEEeccCCCcCCe---EEecCCcccccCCCceEEEEEec-cccCCceEEEEecCCCCCC
Confidence 9999999986542 234567777543322111 11222334556799999999994 5554 4999999998876
Q ss_pred CCCceEEe---ccCCc--eEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEE---------------------------
Q psy14540 150 SDAEITIR---SSGEY--TSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLR--------------------------- 197 (291)
Q Consensus 150 ~~~~~~~~---~~~~~--~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~--------------------------- 197 (291)
........ ..+.. ...|.|..+..+|.|.|+|.|.|..+.......+.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~~~~~~~~~P~v~~~~~~~~~~~G~~~~ 238 (523)
T 2rcj_C 159 AGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECSASTKGPSVFPLAPSSKSTSGGTAA 238 (523)
T ss_pred CceEeccccccCCCCEEEEEEEEEechhcCCCceEEEEEEecCcccccceeeeecCCCCcCCEEEecCCCcccccCCceE
Confidence 54322211 11111 24699999999999999999999776544333210
Q ss_pred ----Eec---------------------------c------ceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecC
Q psy14540 198 ----VNE---------------------------Y------TSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVP 240 (291)
Q Consensus 198 ----~~~---------------------------~------~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~ 240 (291)
+.. . .+.|.|..+..+| |.|+|.|.|..+.......|.+...
T Consensus 239 l~C~~~g~~P~p~~v~W~k~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~g~~~~~~~l~v~~~ 317 (523)
T 2rcj_C 239 LGCLVKDYFPQPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEPLSL 317 (523)
T ss_pred EEEEEeceeCCCeEEEEecCCcccceEeCCcEecCCCcEEEEEEEEechhhcCC-ceEEEEEEeCCCCcceEEecCCCcC
Confidence 000 0 1278888888899 9999999999988777777766555
Q ss_pred CCCCCCC--ccc-ccCCceEEEEEEeecCCC-C---ceEEEEECCEEccCC
Q psy14540 241 PHIGPFT--FGE-LMEGVRTQVACVVQSGDL-P---LSLQWYKNGLAISQP 284 (291)
Q Consensus 241 p~~~~~~--~~~-~~~g~~v~l~C~~~~~~p-~---~~v~W~~~~~~l~~~ 284 (291)
|.+...+ ... +.+|+.+.|.|.+ .|.| + +.|+|+|||.++...
T Consensus 318 P~~~~~~p~~~~~v~~g~~~~l~C~~-~g~~p~~~~~~v~W~k~g~~l~~~ 367 (523)
T 2rcj_C 318 PSVFLFPPKPKDTLMISRTPEVTCVV-VDVSHEDPQVKFNWYVDGVQVHNA 367 (523)
T ss_pred ceEEecCCCchhhcccCCceEEEEEE-ecccCCCCceEEEEEECCeEccCC
Confidence 5543222 222 7889999999999 6643 2 599999999988544
No 16
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Probab=100.00 E-value=1.6e-32 Score=233.74 Aligned_cols=254 Identities=20% Similarity=0.382 Sum_probs=191.6
Q ss_pred CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecC-CCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEE
Q psy14540 2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLA-GDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCT 80 (291)
Q Consensus 2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~ 80 (291)
+|.|... ....+.+|+.+.|.|.+.+ |.+.+.|+++|..+. ..++... . ....|.|.+++..|+|.|+|.
T Consensus 112 ~p~i~~~-~~~~v~~g~~v~l~C~~~~-p~~~v~W~~~g~~l~~~~~~~~~-----~--~~~~L~i~~~~~~d~G~Y~C~ 182 (642)
T 1e07_A 112 KPSISSN-NSKPVEDKDAVAFTCEPET-QDATYLWWVNNQSLPVSPRLQLS-----N--GNRTLTLFNVTRNDTASYKCE 182 (642)
T ss_pred CCcEEcc-CceeEecCCcEEEEEECCC-CCeeEEEEECCeECCCCCceEEc-----C--CCCEEEEeCCCcccCeeEEEE
Confidence 3444432 3356889999999999987 888999999998887 3333221 1 124699999999999999999
Q ss_pred EeCCCCc-eeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEecc
Q psy14540 81 ATNRVGS-QTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSS 159 (291)
Q Consensus 81 ~~~~~~~-~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~ 159 (291)
+.+..+. .+..+.|.|...|..+. ..+....+.+|+.+.|.|.+ .+.|.+.+.|+++|..+..
T Consensus 183 a~n~~~~~~s~~~~l~V~~~p~~~~------~~~~~~~~~~G~~~~l~C~~-~g~p~~~i~W~~~g~~i~~--------- 246 (642)
T 1e07_A 183 TQNPVSARRSDSVILNVLYGPDAPT------ISPLNTSYRSGENLNLSCHA-ASNPPAQYSWFVNGTFQQS--------- 246 (642)
T ss_pred EecCCCCcccceEEEEEEeCCCCcE------EecCCcccccCCEEEEEEEc-CCCCCcEEEEEECCeEccc---------
Confidence 9987765 34567788876553321 12234567899999999999 7999999999999988732
Q ss_pred CCceEEEEEeeCCCCCceeEEEEEEecCCCCCCc--eEEE----------------------------------------
Q psy14540 160 GEYTSSLSIATLSTGHSGNYTCVASNTVASDNHS--SNLR---------------------------------------- 197 (291)
Q Consensus 160 ~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~--~~~~---------------------------------------- 197 (291)
...|.|.++..+|.|.|+|.+.|..+..... ..+.
T Consensus 247 ---~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~v~v~~~~~~p~i~~~~~~~~~~g~~v~l~C~~~~~p~~v~W~ 323 (642)
T 1e07_A 247 ---TQELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFITSNNSNPVEDEDAVALTCEPEIQNTTYLWW 323 (642)
T ss_pred ---CCceEEecccccCCeEEEEEEEeCCCceEEeeeEEEEEEccCCCCEEEcCCceeEecCCcEEEEEECCCCCccEEEE
Confidence 3458999999999999999999987654321 1111
Q ss_pred -------------EeccceEEEEeeeecCCCeeEEEEeeeCCcc-CCceeEEEEecCCCCCC-CCcc-cccCCceEEEEE
Q psy14540 198 -------------VNEYTSSLSIATLSTGHSGNYTCVASNTVAS-DNHSSNLRVNVPPHIGP-FTFG-ELMEGVRTQVAC 261 (291)
Q Consensus 198 -------------~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~-~~~~~~l~v~~~p~~~~-~~~~-~~~~g~~v~l~C 261 (291)
+......|.|.++..+|+|.|+|.|.|..+. .+..+.|.|..+|.... .+.. .+.+|+.++|.|
T Consensus 324 ~~g~~l~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l~C 403 (642)
T 1e07_A 324 VNNQSLPVSPRLQLSNDNRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTYYRPGVNLSLSC 403 (642)
T ss_pred ECCccCCCcCCEEEeCCCCEEEEeccCcccCeeEEEEEeCCCCCcceeeEEEEEEcCCCCCeecCCceEecCCCcEEEEE
Confidence 0011467899999999999999999998865 45667888887665432 2222 388999999999
Q ss_pred EeecCCCCceEEEEECCEEccCC
Q psy14540 262 VVQSGDLPLSLQWYKNGLAISQP 284 (291)
Q Consensus 262 ~~~~~~p~~~v~W~~~~~~l~~~ 284 (291)
.+ .+.|++.++|++||..+..+
T Consensus 404 ~~-~g~p~~~i~W~~~g~~~~~~ 425 (642)
T 1e07_A 404 HA-ASNPPAQYSWLIDGNIQQHT 425 (642)
T ss_pred Ec-CccCCCeEEEEECCEEcCCC
Confidence 99 88999999999999998654
No 17
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J
Probab=100.00 E-value=6.6e-32 Score=227.58 Aligned_cols=266 Identities=20% Similarity=0.279 Sum_probs=194.0
Q ss_pred eeecceeeeecCCcEEEEEEecCCCC---CeeEEEECCeecC------CC-----eeEeceEEe-eccceEEEEEEeecC
Q psy14540 6 IYKFIQQTLQPGPPVSLKCIATGNPT---PHISWKLDGYPLA------GD-----RFVMGQYMS-LHGDVISHVNISSVR 70 (291)
Q Consensus 6 ~~~~~~~~v~~g~~v~l~C~~~~~~~---~~v~W~~~~~~~~------~~-----~~~~~~~~~-~~~~~~~~l~i~~~~ 70 (291)
+..|..+.+.+|++++|.|.+.+.+. ..+.|+|++..+. .. .+....... ....+.+.|.|.+++
T Consensus 4 i~~P~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~~~L~I~~v~ 83 (585)
T 2ocw_A 4 IFGPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLS 83 (585)
T ss_pred ccCcceeEEecCCcEEEEEeCCCCcCCCcccEEEEeCCCCCCceEEEECCCcccceeeceEEEEecCCCCEEEEEECCCC
Confidence 44577789999999999999987653 3799999875331 00 000000011 113445789999999
Q ss_pred CCCCeEEEEEEeCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccC
Q psy14540 71 VEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILS 150 (291)
Q Consensus 71 ~~d~G~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~ 150 (291)
.+|+|.|+|.+.+..+.....+.|.|...|.. ...+....+.+|+.+.|.|.+..+.|.+.+.|++++.....
T Consensus 84 ~~D~G~Y~C~~~n~~~~~~~~~~l~V~~~p~~-------~~~~~~~~v~~G~~v~l~C~~~~~~~~~~v~W~k~~~~~~~ 156 (585)
T 2ocw_A 84 QDDSGRYKCGLGINSRGLSFDVSLEVSQGPGL-------LNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPV 156 (585)
T ss_pred cccCEEEEEEcccCCCCceEEEEEEEecCccc-------cCCCccEEEEcCCCEEEEEEecCCCCCccEEEEECCCCCce
Confidence 99999999999988777778888888876632 23345677889999999999954566788999998754211
Q ss_pred -------------CCceEEeccC--CceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEec---------------
Q psy14540 151 -------------DAEITIRSSG--EYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNE--------------- 200 (291)
Q Consensus 151 -------------~~~~~~~~~~--~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~--------------- 200 (291)
..+..+...+ .+...|.|.++..+|.|.|+|.+.|..+.....+.+.+..
T Consensus 157 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~p~~~~~~~G~~v~ 236 (585)
T 2ocw_A 157 LVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPELVYEDLRGSVT 236 (585)
T ss_pred EEecCCcccCccccCcEEEEeccCCCcEEEEEEccCChhHCeEEEEEeccCCccccceEEEEEccCCCceeEEcCCCcEE
Confidence 1223332222 2345799999999999999999999887655444443110
Q ss_pred -------------------c------------------------------ce--EEEEeeeecCCCeeEEEEeeeCCccC
Q psy14540 201 -------------------Y------------------------------TS--SLSIATLSTGHSGNYTCVASNTVASD 229 (291)
Q Consensus 201 -------------------~------------------------------~~--~l~i~~~~~~~~g~y~C~~~~~~~~~ 229 (291)
. .. .|.|.++..+|+|.|+|.|.|.....
T Consensus 237 l~C~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~L~i~~v~~~d~G~Y~C~a~n~g~~~ 316 (585)
T 2ocw_A 237 FHCALGPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAHSDGQLQ 316 (585)
T ss_pred EEEEcCCCCCCceEEEEEeCCCCCcceEEeCCCcCCcccCCceEeeccCCCcEEEEEEccCChhhCEEEEEEEEcCCCcc
Confidence 0 11 68899999999999999999964333
Q ss_pred ----CceeEEEEecCCCCCCCCccc-ccCCceEEEEEEeecCCCCceE----EEEE--CCE
Q psy14540 230 ----NHSSNLRVNVPPHIGPFTFGE-LMEGVRTQVACVVQSGDLPLSL----QWYK--NGL 279 (291)
Q Consensus 230 ----~~~~~l~v~~~p~~~~~~~~~-~~~g~~v~l~C~~~~~~p~~~v----~W~~--~~~ 279 (291)
...+.|.|..+|.+...+... +.+|+.++|.|.+ .+.|.+.+ .|++ ||.
T Consensus 317 ~~~~~~~~~l~V~~~p~~~~~~~~~~~~~G~~v~l~C~~-~~~p~p~i~~w~~W~~~~~g~ 376 (585)
T 2ocw_A 317 EGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVLCPY-NRKESKSIKYWCLWEGAQNGR 376 (585)
T ss_pred ccCceeeEEEEEecccccccCCcceEEEeCCcEEEEEec-CCCCCccEEEEEEEEccCCCC
Confidence 278889999888887766555 8899999999999 88888876 8999 887
No 18
>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}
Probab=100.00 E-value=1e-32 Score=229.54 Aligned_cols=277 Identities=18% Similarity=0.268 Sum_probs=179.7
Q ss_pred CCcceeecceeeeecCCcEEEEEEecCCCC--CeeEEEECCeecCCCeeEeceEEeecc--ceEEEEEEeecCCCCCeEE
Q psy14540 2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPT--PHISWKLDGYPLAGDRFVMGQYMSLHG--DVISHVNISSVRVEDSGIY 77 (291)
Q Consensus 2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~--~~v~W~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~y 77 (291)
+|.+...+....+.+|+.++|.|.+.+.+. +.+.|+++|..+..............+ ...+.|.|.+++.+|+|.|
T Consensus 114 ~P~~~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y 193 (523)
T 2rcj_C 114 NPTVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADGSPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSY 193 (523)
T ss_pred CCeEEecCCcccccCCCceEEEEEeccccCCceEEEEecCCCCCCCceEeccccccCCCCEEEEEEEEEechhcCCCceE
Confidence 566776676667788999999999998654 389999999887633211101000111 1235799999999999999
Q ss_pred EEEEeCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCc-eeEEeECCEeccCCCceEE
Q psy14540 78 QCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPL-TISWLKNGLPILSDAEITI 156 (291)
Q Consensus 78 ~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~~~~~~~~~~~~~~ 156 (291)
+|.+.+..+.....+.+.+......++ ... .......+.+|+.+.|.|.+.+..|.+ .+.|++++..+........
T Consensus 194 ~C~a~n~~~~~~~~~~~~~~~~~~~~P--~v~-~~~~~~~~~~G~~~~l~C~~~g~~P~p~~v~W~k~g~~~~~~~~~~~ 270 (523)
T 2rcj_C 194 SCQVTHEGSTVEKTVAPTECSASTKGP--SVF-PLAPSSKSTSGGTAALGCLVKDYFPQPVTVSWNSGALTSGVHTFPAV 270 (523)
T ss_pred EEEEEecCcccccceeeeecCCCCcCC--EEE-ecCCCcccccCCceEEEEEEeceeCCCeEEEEecCCcccceEeCCcE
Confidence 999998877655554433222111111 111 112223457899999999994344767 8999999987543211111
Q ss_pred e-ccCC--ceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEE-----------------------------Eec----
Q psy14540 157 R-SSGE--YTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLR-----------------------------VNE---- 200 (291)
Q Consensus 157 ~-~~~~--~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~-----------------------------~~~---- 200 (291)
. ..+. ....|.|..+..+| |.|+|.|.|..|.......+. +..
T Consensus 271 ~~~~g~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~g~~~~~~~l~v~~~P~~~~~~p~~~~~v~~g~~~~l~C~~~g~~p~ 349 (523)
T 2rcj_C 271 LQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEPLSLPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHE 349 (523)
T ss_pred ecCCCcEEEEEEEEechhhcCC-ceEEEEEEeCCCCcceEEecCCCcCceEEecCCCchhhcccCCceEEEEEEecccCC
Confidence 1 1111 13579999999999 999999999887643322211 000
Q ss_pred --------------------------------cceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEE----EecCCCCC
Q psy14540 201 --------------------------------YTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLR----VNVPPHIG 244 (291)
Q Consensus 201 --------------------------------~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~----v~~~p~~~ 244 (291)
..+.|.|..+..+|+|.|+|.|.|..+.......+. +..+|.+.
T Consensus 350 ~~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~~~~~~~~~P~v~ 429 (523)
T 2rcj_C 350 DPQVKFNWYVDGVQVHNAKTKPREQQYNSTYRVVSVLTVLHQNWLDGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVY 429 (523)
T ss_pred CCceEEEEEECCeEccCCccCCceecCCCcEEEEEEEEECHHHhcCCCeEEEEEeCCCCCCceeEEEEcccCCCCCCEEE
Confidence 012356666777899999999999876655554555 34566655
Q ss_pred CCCccc-ccCCceEEEEEEeecCCCCc--eEEEEECCEEccC
Q psy14540 245 PFTFGE-LMEGVRTQVACVVQSGDLPL--SLQWYKNGLAISQ 283 (291)
Q Consensus 245 ~~~~~~-~~~g~~v~l~C~~~~~~p~~--~v~W~~~~~~l~~ 283 (291)
..+... ...|+.++|.|.+ .|.|++ .|.|+|||.++..
T Consensus 430 ~~~~~~~~~~~~~~~l~C~~-~g~~p~~~~v~W~k~g~~~~~ 470 (523)
T 2rcj_C 430 TLPPSREEMTKNQVSLTCLV-KGFYPSDIAVEWESNGQPENN 470 (523)
T ss_pred EeCCChHHccCCceEEEEEE-EeeECCCCEEEEEECCEECCC
Confidence 443333 2234449999999 665544 9999999999864
No 19
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4
Probab=100.00 E-value=1.7e-33 Score=229.99 Aligned_cols=262 Identities=14% Similarity=0.199 Sum_probs=187.2
Q ss_pred CCcce-eecceeeeecCCcEEEEEEecCCCCC---eeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEE
Q psy14540 2 HPQLI-YKFIQQTLQPGPPVSLKCIATGNPTP---HISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIY 77 (291)
Q Consensus 2 ~p~~~-~~~~~~~v~~g~~v~l~C~~~~~~~~---~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y 77 (291)
+|.+. ..+.+..+.+|+.+.|.|.+.+.+.+ .|.|+|++..+..... ........|.|.+++.+|+|.|
T Consensus 85 ~P~~~~~~~~~~~v~~G~~v~L~C~~~g~~~~~~~~v~W~k~g~~l~~~~~-------~~~~~~~~L~i~~~~~~d~G~Y 157 (450)
T 1z7z_I 85 TPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPA-------VGEPAEVTTTVLVRRDHHGANF 157 (450)
T ss_dssp CCSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEEC-------CTTTEEEEEEEECCSSCSSCEE
T ss_pred CCCcceecCCCceEeeCCeEEEEEEecCCCCCcCcEEEEeeCCEEeecccc-------cccccceEEEEEeeccccCceE
Confidence 45444 56666789999999999999987777 8999999987752221 1122335799999999999999
Q ss_pred EEEEeCCCCcee--------eeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCC--CceeEEeECCEe
Q psy14540 78 QCTATNRVGSQT--------HSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDP--PLTISWLKNGLP 147 (291)
Q Consensus 78 ~C~~~~~~~~~~--------~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p--~~~~~W~~~~~~ 147 (291)
+|.+.+..+... ....+.|...+..++ .. . ....+.+|+.+.|.|.+....| .+.+.|++++..
T Consensus 158 ~C~a~n~~g~~~~~~~~~~s~~~~l~v~~~~~~~p---~~-~--~~~~v~~G~~v~l~C~~~g~~P~~~~~~~W~~~~~~ 231 (450)
T 1z7z_I 158 SCRTELDLRPQGLELFENTSAPYQLQTFVLPATPP---QL-V--SPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQR 231 (450)
T ss_dssp EEEEEEECGGGTSCEEEEECCCEECEECCCCSSCC---EE-E--CCSEEETTSEEEEEEEEESCTTGGGCEEEEEETTEE
T ss_pred EEEEEcccCCCCceEEeeccCccceeeeccCCCCC---Ee-c--CceeEEeCCcEEEEEEeeCCCCCCceEEEEeCCCEe
Confidence 999998765322 333445544321110 11 0 1157889999999999953337 789999999998
Q ss_pred ccCCCceEEeccCCceEEEEEeeCCCCCce--eEEEEEEecCCCCCCceEEEEec-------------------------
Q psy14540 148 ILSDAEITIRSSGEYTSSLSIATLSTGHSG--NYTCVASNTVASDNHSSNLRVNE------------------------- 200 (291)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g--~y~C~~~~~~~~~~~~~~~~~~~------------------------- 200 (291)
+.. ..... ...........+..+|.| .|+|.+.|..+.......+.+..
T Consensus 232 ~~~--~~~~~--~~~~~~~~~~~v~~~d~G~~~Y~C~a~n~~g~~~~~~~l~V~~~~~p~i~~~~~~v~~G~~v~l~C~~ 307 (450)
T 1z7z_I 232 LNP--TVTYG--NDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEVSEGTEVTVKCEA 307 (450)
T ss_dssp CCC--EEEEE--TTEEEEEEEEECCGGGCEEEEEEEEEEETTEEEEEEEEEEEECCCCCEEEESCSEEETTCEEEEEEEC
T ss_pred CCc--eEEec--CCceeEEEEEEeEhhhCCcEEEEEEEccCCccEEEEEEEEEecCCCCeEecCCeeEeCCCcEEEEEec
Confidence 765 22222 111111112277899999 99999999877665444443322
Q ss_pred -----------------cceEEEEeeeecCCCeeEEEEeeeCCc----cCCceeEEEEecCCCCCCCCc--c-cccCCce
Q psy14540 201 -----------------YTSSLSIATLSTGHSGNYTCVASNTVA----SDNHSSNLRVNVPPHIGPFTF--G-ELMEGVR 256 (291)
Q Consensus 201 -----------------~~~~l~i~~~~~~~~g~y~C~~~~~~~----~~~~~~~l~v~~~p~~~~~~~--~-~~~~g~~ 256 (291)
....|.|..+..+|+|.|+|.|.|..+ .....+.|.|..+|.+..... . .+.+|+.
T Consensus 308 ~p~p~i~W~g~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~V~~~P~~~~~~~p~~~~~~~g~~ 387 (450)
T 1z7z_I 308 HPRAKVTLNGVPAQPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQ 387 (450)
T ss_dssp ----------------CCCCCEEEECCGGGTTCEEEEEEEEEETTEEEEEEEEEECEEEEEEECCSTTSCSEEEEETTCE
T ss_pred CCCCEeEECCEEcCCCCceEEEEEecCcccCCceEEEEEEcCCCCcccccceeEEEEEecCCceeeccCCCceeEcCCCe
Confidence 234688999999999999999997654 334778888888887776642 2 3889999
Q ss_pred EEEEEEeecCCCCceEEEEECCEEc
Q psy14540 257 TQVACVVQSGDLPLSLQWYKNGLAI 281 (291)
Q Consensus 257 v~l~C~~~~~~p~~~v~W~~~~~~l 281 (291)
++|.|.+ .|.|.|.|.|+|+|..+
T Consensus 388 ~~l~C~~-~g~P~p~i~W~~~g~~~ 411 (450)
T 1z7z_I 388 QTPMCQA-WGNPLPELKCLKDGTFP 411 (450)
T ss_dssp ECCCCCC-EEESCCEEEEEETTTEE
T ss_pred EEEEEec-ccCCCCcEEEEECCccc
Confidence 9999999 89999999999998744
No 20
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Probab=100.00 E-value=1.7e-33 Score=234.27 Aligned_cols=253 Identities=18% Similarity=0.232 Sum_probs=193.2
Q ss_pred CCCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEE
Q psy14540 1 SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCT 80 (291)
Q Consensus 1 s~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~ 80 (291)
.||.|...+....+.+|+.++|.|.+.+ .+.|++++..+. . .....+|.|.+++.+|+|.|+|.
T Consensus 35 ~pP~i~~~~~~~~v~~G~~v~l~C~~~~----~v~W~~~~~~~~---~---------~~~~~~L~I~~~~~~D~G~Y~C~ 98 (524)
T 2ec8_A 35 SPPSIHPGKSDLIVRVGDEIRLLCTDPG----FVKWTFEILDET---N---------ENKQNEWITEKAEATNTGKYTCT 98 (524)
T ss_dssp CCCEEESCCSEEECCTTSCEEEEEECTT----EEEEEEESSSCC---E---------EECSSEEEESSCCSTTCEEEEEE
T ss_pred CCCccCCCCceEEEeCCCeEEEEEeCCc----eEEEcCCCcccc---c---------cCccceEEEcccchhhCEEEEEe
Confidence 3788887778889999999999999876 899999987652 0 11225699999999999999999
Q ss_pred EeCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeE-CCEeccCCCceEEecc
Q psy14540 81 ATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLK-NGLPILSDAEITIRSS 159 (291)
Q Consensus 81 ~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~-~~~~~~~~~~~~~~~~ 159 (291)
+.+ | ....+.|.|..++.. . ..+....+.+|+.+.|.|.+ .+.+.+.+.|++ +|..+....+......
T Consensus 99 a~n--g-~~~~~~l~V~~p~~~---~----~~~~~~~v~~G~~v~l~C~~-~~~~~~~v~W~~~~g~~l~~~~~~~~~~~ 167 (524)
T 2ec8_A 99 NKH--G-LSNSIYVFVRDPAKL---F----LVDRSLYGKEDNDTLVRCPL-TDPEVTNYSLKGCQGKPLPKDLRFIPDPK 167 (524)
T ss_dssp ETT--S-CEEEEEEECCCSSCS---B----CCCCCCCEETTSCEEECCCB-SCCCCSCEEEECSSSCCCCSSCEEEEETT
T ss_pred ecC--C-cceEEEEEECCCCcc---c----ccccceEEEcCCeEEEECcC-CCCccceEEEEccCCcCcCCCCceeECCC
Confidence 987 4 356666666643311 1 33445678899999999999 576678999998 7887766555544432
Q ss_pred CCceEEEEEeeCCCCCce-eEEEEEEecCCCCCC-ceEEEEe--------------------------------------
Q psy14540 160 GEYTSSLSIATLSTGHSG-NYTCVASNTVASDNH-SSNLRVN-------------------------------------- 199 (291)
Q Consensus 160 ~~~~~~l~i~~~~~~d~g-~y~C~~~~~~~~~~~-~~~~~~~-------------------------------------- 199 (291)
..|.|..+..+|.| .|+|.+.|..+.... .+.+.+.
T Consensus 168 ----~~L~i~~~~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~~ 243 (524)
T 2ec8_A 168 ----AGIMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVY 243 (524)
T ss_dssp ----TEEEEESCCGGGTTCEEEEEEC----CCCCCCEECCEECCCCSCCEEECSCSEEEEETTSCEEEEEEEEESSTTCE
T ss_pred ----ccEEEeccchhhCCceEEEEEEECCceEEEEEEEEEEEeCCCCCCcEEecCCcceEEcCCcEEEEEEEecCCCcEE
Confidence 36999999999999 999999987664422 2222110
Q ss_pred --------------------------ccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCCCCCCCCc----c
Q psy14540 200 --------------------------EYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGPFTF----G 249 (291)
Q Consensus 200 --------------------------~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p~~~~~~~----~ 249 (291)
.....|.|.++..+|+|.|+|.|.|..+.....+.|.|..+|.+...+. .
T Consensus 244 i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~ 323 (524)
T 2ec8_A 244 STWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFINIFPMINTTV 323 (524)
T ss_dssp EEEEETTCSCCCCEEEEEEECSSSCEEEEEEEEESSCCTTTCEEEEEEEECSSCEEEEEEEEEEESSCEEEEEESSCSEE
T ss_pred EEEEeCCCCCccccccccccccCCccceEEEEEECCCCHHHCEEEEEEEEecCCceEEEEEEEEeccCceEeecCCCceE
Confidence 1136788899999999999999999998888899999998887766543 2
Q ss_pred cccCCceEEEEEEeecCCCCce-EEEEECCEEccCCe
Q psy14540 250 ELMEGVRTQVACVVQSGDLPLS-LQWYKNGLAISQPD 285 (291)
Q Consensus 250 ~~~~g~~v~l~C~~~~~~p~~~-v~W~~~~~~l~~~~ 285 (291)
.+.+|+.++|.|.+ .|.|.|. +.|+++|..+....
T Consensus 324 ~v~~G~~v~l~C~~-~g~P~p~~v~W~k~g~~~~~~~ 359 (524)
T 2ec8_A 324 FVNDGENVDLIVEY-EAFPKPEHQQWIYMNRTFTDKW 359 (524)
T ss_dssp EECTTCCEEEEEEE-EEESCCCEEEEESSSCBCSSSB
T ss_pred EEcCCCcEEEEEEE-eecCCCcEEEEEECCeeccCCc
Confidence 38999999999999 8889988 99999999986553
No 21
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A
Probab=100.00 E-value=9.4e-33 Score=212.96 Aligned_cols=229 Identities=21% Similarity=0.362 Sum_probs=167.9
Q ss_pred CCcceeecceeeeecCCcEEEEEEecCCC-CCeeEEEE-CCeecCCC--eeEeceEEeeccceEEEEEEeecCCCCCeEE
Q psy14540 2 HPQLIYKFIQQTLQPGPPVSLKCIATGNP-TPHISWKL-DGYPLAGD--RFVMGQYMSLHGDVISHVNISSVRVEDSGIY 77 (291)
Q Consensus 2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~-~~~v~W~~-~~~~~~~~--~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y 77 (291)
||.|...|.+..+.+|+.+.|.|.+.+.+ .+.+.|++ +|..+... ++... ..+...+.|.|.+++.+|+|.|
T Consensus 2 ~~~v~~~p~~~~v~~G~~v~l~C~~~~~~~~~~i~W~~~~g~~~~~~~~~~~~~----~~~~~~~~L~i~~~~~~D~G~Y 77 (291)
T 1qz1_A 2 VLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVV----WNDDDSSTLTIYNANIDDAGIY 77 (291)
T ss_dssp CCCEEEESSSEEEETTCCEEEEEEESSCCSCCEEEEECTTSCBCCSSCSSEEEE----EEETTEEEEEECSCCGGGCEEE
T ss_pred CcceEecCCCceEeCCCeEEEEEEeCCCCCCcEeEEECCCCeECccCCceEEEE----EcCCCeEEEEEecCCCCCCEEE
Confidence 78899999999999999999999999865 68999999 77766622 22221 1223457799999999999999
Q ss_pred EEEEeCCCCc-eeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEE
Q psy14540 78 QCTATNRVGS-QTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITI 156 (291)
Q Consensus 78 ~C~~~~~~~~-~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~ 156 (291)
+|.+.+..+. ....+.+.|...+ .....+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+........
T Consensus 78 ~C~~~n~~g~~~~~~~~l~v~~~~-------~~~~~~~~~~~~~g~~v~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~ 149 (291)
T 1qz1_A 78 KCVVTAEDGTQSEATVNVKIFQKL-------MFKNAPTPQEFKEGEDAVIVCDV-VSSLPPTIIWKHKGRDVILKKDVRF 149 (291)
T ss_dssp EEEEECTTSCEEEEEEEEEEECCS-------EEEECCSSEEEETTSCEEECCEE-ECSSCCEEEEEETTSCSSTTCCTTE
T ss_pred EEEEEcCCCCeeEEEEEEEeeccc-------cccCCCCcccccCCCeEEEEEEe-ccCCCCEEEEEECCEEcccCCCceE
Confidence 9999987753 4566777776544 12233445678899999999999 5888899999999987643321110
Q ss_pred eccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCcc--CCceeE
Q psy14540 157 RSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVAS--DNHSSN 234 (291)
Q Consensus 157 ~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~--~~~~~~ 234 (291)
.. .....|.|.++..+|+|.|+|.+.|..+. ....+.
T Consensus 150 ~~-----------------------------------------~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~ 188 (291)
T 1qz1_A 150 IV-----------------------------------------LSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQ 188 (291)
T ss_dssp EE-----------------------------------------CTTSCEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEE
T ss_pred EE-----------------------------------------ccCCcEEEccCccccCeEEEEEEEecCCCceeeEEEE
Confidence 00 01234667777777788888888775522 334566
Q ss_pred EEEecCCCCCCCCcc---cccCCceEEEEEEeecCCCCceEEEEECCEEccCC
Q psy14540 235 LRVNVPPHIGPFTFG---ELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQP 284 (291)
Q Consensus 235 l~v~~~p~~~~~~~~---~~~~g~~v~l~C~~~~~~p~~~v~W~~~~~~l~~~ 284 (291)
+.|..+|.+...... .+.+|+.++|.|.+ .|.|.|.+.|+++|..+...
T Consensus 189 l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~-~g~p~p~i~W~~~g~~~~~~ 240 (291)
T 1qz1_A 189 VIVNVPPTVQARQSIVNATANLGQSVTLVCDA-DGFPEPTMSWTKDGEPIENE 240 (291)
T ss_dssp EEEEEEEEEEESCSEEEEETTSCCCEEEEEEE-EEESCCEEEEEETTEECCCC
T ss_pred EEEecCCcccccccccccccccCceEEEEEEE-EEeCCCcEEEEECCEECcCC
Confidence 677777766544332 38899999999999 88999999999999998655
No 22
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}
Probab=100.00 E-value=1.4e-32 Score=227.30 Aligned_cols=255 Identities=11% Similarity=0.114 Sum_probs=169.7
Q ss_pred eeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCC-CeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCC
Q psy14540 6 IYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAG-DRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNR 84 (291)
Q Consensus 6 ~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~ 84 (291)
+..+.+..|.+|++++|.|.+.+.+...+.|++++..+.. ..+. .......+|.|.+++..|+|.|+|.+.+.
T Consensus 52 ~~~~~~~~v~~g~~~~L~c~~~~~~~~~~~W~~~~~~l~~~~~~~------~~~r~~~SL~I~~v~~~D~G~Y~C~~~n~ 125 (527)
T 3qs9_E 52 VYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFD------LQNRGVVSMVILKMTETQAGEYLLFIQSE 125 (527)
T ss_dssp ----CEEEECSSCCEEEEEECSCCSSCEEEEEETTEEECCCCBC-----------CEEEEEESSCCSSSCSEEEEEEEC-
T ss_pred eeeeeeEEEeccccEEEEEEEecCCceeEEEEecCCccCcccccC------CCcceEEEEEECcCChhhCeeEEEEEEec
Confidence 3445578899999999999998877889999999887652 2221 11223466999999999999999999988
Q ss_pred CCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceE
Q psy14540 85 VGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTS 164 (291)
Q Consensus 85 ~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~ 164 (291)
.+.......+.|. +... . ..........|+.+.|.|.+ .|.|.|.+.|++++..+...... .....
T Consensus 126 ~~~~~~~~~v~v~--~~~~---~---~~~~p~~~~~~~~~~L~C~a-~G~P~P~i~W~~~~~~~~~~~~~-----~~~~~ 191 (527)
T 3qs9_E 126 ATNYTILFTVSIR--NTLL---Y---TLRRPYFRKMENQDALVCIS-ESVPEPIVEWVLCDSQGESCKEE-----SPAVV 191 (527)
T ss_dssp -CEEEEEEEEEEC-------------CEEEEEEEECSSSSCEEEEE-EESSCCEEEEEEC------------------CE
T ss_pred cccEEEEEEEEEC--Ccee---e---ccCCCcEEecCCceEEEEEE-ceecCCeEEEEECCCCCcccccc-----CCcEE
Confidence 7766655555554 2111 0 11112334567788999999 79999999999988765321100 00111
Q ss_pred EEEEeeCCCCCceeEEEEEEecCCCCCCc-eEEE-------------------------Ee-------------------
Q psy14540 165 SLSIATLSTGHSGNYTCVASNTVASDNHS-SNLR-------------------------VN------------------- 199 (291)
Q Consensus 165 ~l~i~~~~~~d~g~y~C~~~~~~~~~~~~-~~~~-------------------------~~------------------- 199 (291)
......+...|.|.|+|.|.|..|..... +.+. +.
T Consensus 192 ~~~~~~~~~~d~G~Y~C~A~N~~G~~~~~~~~l~V~~~p~~~p~~~~v~~G~~v~L~C~~~~g~p~p~i~W~k~g~~l~~ 271 (527)
T 3qs9_E 192 KKEEKVLHELFGTDIRCCARNELGRECTRLFTIDLNQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEE 271 (527)
T ss_dssp EECCSEECCCCSSCEEEEEECSSCEEEEECEEEESSSCCCCSCCEEEECTTSCEEEEEEEEESSSCCCEEEECSSSCCCG
T ss_pred EEeeeeccccCCEEEEEEEEeCCCcccceEEEEEEeccCccCCCceEEeCCCeEEEEEEEccCCCCeEEEEEECCEECCC
Confidence 12223345789999999999987754332 2222 00
Q ss_pred ---------------ccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCCCCCCCCc---ccccCCceEEEEE
Q psy14540 200 ---------------EYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGPFTF---GELMEGVRTQVAC 261 (291)
Q Consensus 200 ---------------~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p~~~~~~~---~~~~~g~~v~l~C 261 (291)
.....|.|.++..+|+|.|+|.|.|. ....+.|.|..+|.+...+. ..+.+|+.+.|.|
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~N~---~~~~~~L~V~~~p~i~~~~~~~~~~v~~G~~v~L~C 348 (527)
T 3qs9_E 272 GNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH---PSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSV 348 (527)
T ss_dssp GGEEEEEEEETTTEEEEEEEEEESSCCGGGCEEEEEEETTE---EEEEEEEEEC--CEEECCCSCCEECCCTTCCCCEEE
T ss_pred CceeeeeeeccCcceeeEEEEEEccCCcccCeEEEEEEEeC---CCceEEEEEEccCccccccCcccEEEcCCCeEEEEE
Confidence 00134899999999999999999988 56777888887776544332 2288999999999
Q ss_pred EeecCCCCceEEEEECCEEccCC
Q psy14540 262 VVQSGDLPLSLQWYKNGLAISQP 284 (291)
Q Consensus 262 ~~~~~~p~~~v~W~~~~~~l~~~ 284 (291)
.+ .|.|.|.|+|+|||..|...
T Consensus 349 ~~-~g~P~p~i~W~k~g~~l~~~ 370 (527)
T 3qs9_E 349 RF-KAYPQIRCTWTFSRKSFPCE 370 (527)
T ss_dssp EE-EEESCCEEEEEETTEEEECB
T ss_pred EE-EecCCCEEEEEECCEECcCC
Confidence 99 88999999999999999554
No 23
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J
Probab=100.00 E-value=2.5e-31 Score=224.06 Aligned_cols=266 Identities=17% Similarity=0.225 Sum_probs=187.8
Q ss_pred CCcceeecceeeeecCCcEEEEEEecC-CCCCeeEEEECCeecC--------------CCeeEeceEEeeccceEEEEEE
Q psy14540 2 HPQLIYKFIQQTLQPGPPVSLKCIATG-NPTPHISWKLDGYPLA--------------GDRFVMGQYMSLHGDVISHVNI 66 (291)
Q Consensus 2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~-~~~~~v~W~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~l~i 66 (291)
+|.|...+....+.+|+.+.|.|.+.+ .+.+.+.|++++.... ..+.... ........++|.|
T Consensus 112 ~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~--~~~~~~~~~~L~I 189 (585)
T 2ocw_A 112 GPGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLD--IQGTGQLLFSVVI 189 (585)
T ss_pred CccccCCCccEEEEcCCCEEEEEEecCCCCCccEEEEECCCCCceEEecCCcccCccccCcEEEE--eccCCCcEEEEEE
Confidence 677888888889999999999999986 4467799999875321 0111110 0111223467999
Q ss_pred eecCCCCCeEEEEEEeCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCC-ceeEEe-EC
Q psy14540 67 SSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPP-LTISWL-KN 144 (291)
Q Consensus 67 ~~~~~~d~G~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~-~~~~W~-~~ 144 (291)
.+++.+|+|.|+|.+.+..+.....+.|.|...+ +..+.+.+|+.+.|.|.+....|. +.+.|+ ++
T Consensus 190 ~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~------------p~~~~~~~G~~v~l~C~~~~~~~~~~~~~w~~~~ 257 (585)
T 2ocw_A 190 NQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPE------------PELVYEDLRGSVTFHCALGPEVANVAKFLCRQSS 257 (585)
T ss_pred ccCChhHCeEEEEEeccCCccccceEEEEEccCC------------CceeEEcCCCcEEEEEEcCCCCCCceEEEEEeCC
Confidence 9999999999999999888888888888887543 123457799999999997323333 788997 77
Q ss_pred CEe---ccC---------CCceEEecc-CCceEEEEEeeCCCCCceeEEEEEEecCCCCC----CceEEE----------
Q psy14540 145 GLP---ILS---------DAEITIRSS-GEYTSSLSIATLSTGHSGNYTCVASNTVASDN----HSSNLR---------- 197 (291)
Q Consensus 145 ~~~---~~~---------~~~~~~~~~-~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~----~~~~~~---------- 197 (291)
+.. +.. ..+..+... ..+...|.|..+..+|.|.|+|.|.|..+... ..+.+.
T Consensus 258 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~L~i~~v~~~d~G~Y~C~a~n~g~~~~~~~~~~~~l~V~~~p~~~~~ 337 (585)
T 2ocw_A 258 GENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRS 337 (585)
T ss_pred CCCcceEEeCCCcCCcccCCceEeeccCCCcEEEEEEccCChhhCEEEEEEEEcCCCccccCceeeEEEEEecccccccC
Confidence 732 111 122222211 12334799999999999999999999533221 222222
Q ss_pred -------------------------E----ec-c--c-------------------------------eEEEEeeeecCC
Q psy14540 198 -------------------------V----NE-Y--T-------------------------------SSLSIATLSTGH 214 (291)
Q Consensus 198 -------------------------~----~~-~--~-------------------------------~~l~i~~~~~~~ 214 (291)
+ .- . + .+|.|.++..+|
T Consensus 338 ~~~~~~~~G~~v~l~C~~~~~p~p~i~~w~~W~~~~~g~~~~l~~~~~~~~~~~~~r~~~~~~~~~g~~~L~I~~v~~~D 417 (585)
T 2ocw_A 338 PTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRD 417 (585)
T ss_pred CcceEEEeCCcEEEEEecCCCCCccEEEEEEEEccCCCCCceeeeecceeecccCCCEEEeccCCCcEEEEEECCCChhh
Confidence 1 10 0 0 127888899999
Q ss_pred CeeEEEEeeeCCccCCceeEEEEecC-CCCCCCCcccccCCceEEEEEEeec---CCCCceEEEEECCEEcc
Q psy14540 215 SGNYTCVASNTVASDNHSSNLRVNVP-PHIGPFTFGELMEGVRTQVACVVQS---GDLPLSLQWYKNGLAIS 282 (291)
Q Consensus 215 ~g~y~C~~~~~~~~~~~~~~l~v~~~-p~~~~~~~~~~~~g~~v~l~C~~~~---~~p~~~v~W~~~~~~l~ 282 (291)
+|.|+|.| |..+.....+.|.|..+ |.+..+....+.+|+.++|.|.+.. +.|.+.|.|+|||..+.
T Consensus 418 ~G~Y~C~a-n~~g~~~~~~~l~V~~~~p~~~~~~~~~v~~G~~v~L~C~~~~~~~~~p~~~v~W~k~g~~~~ 488 (585)
T 2ocw_A 418 AGFYWCLT-NGDTLWRTTVEIKIIEGEPNLKVPGNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQAL 488 (585)
T ss_pred CEEEEEcc-cCCCccceeEEEEEecCccccccCCceeEecCCcEEEEEEecCCCCCCccEEEEEeecCceee
Confidence 99999999 88888888899998764 5555433334999999999999932 67889999999998773
No 24
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}
Probab=100.00 E-value=5.9e-32 Score=208.49 Aligned_cols=226 Identities=24% Similarity=0.427 Sum_probs=166.2
Q ss_pred CCCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEE-CCeecC-CCeeEeceEEeeccceEEEEEEeecCCCCCeEEE
Q psy14540 1 SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKL-DGYPLA-GDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQ 78 (291)
Q Consensus 1 s~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~-~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~ 78 (291)
.+|.|...+.+..+.+|+.++|.|.+.+.|. .+.|++ ++..+. ..++.. ......+.|.|.+++..|+|.|+
T Consensus 3 ~~p~v~~~~~~~~v~~G~~v~l~C~~~~~p~-~v~W~~~~g~~~~~~~~~~~-----~~~~~~~~L~i~~~~~~D~G~Y~ 76 (291)
T 2wim_A 3 ALLQVTISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIISTQRVVV-----QKEGVRSRLTIYNANIEDAGIYR 76 (291)
T ss_dssp CCCEEEESCSEEEEETTCCEEEEEEEESCCS-EEECBCTTCCBCCCBTTEEE-----EEETTEEEEEECSCCGGGCEEEE
T ss_pred CCceEEEeccceEecCCCcEEEEEEEeCCCC-ceEEECCCCcCccCCCcEEE-----ecCCCEEEEEEccCCcccCEEEE
Confidence 3789999999999999999999999998764 899999 676665 233322 12223567999999999999999
Q ss_pred EEEeCCCCce-eeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCC--ceE
Q psy14540 79 CTATNRVGSQ-THSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDA--EIT 155 (291)
Q Consensus 79 C~~~~~~~~~-~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~--~~~ 155 (291)
|.+.+..+.. ...+.+.|...+... ..+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+.... +..
T Consensus 77 C~~~n~~g~~~~~~~~l~v~~~~~~~-------~~~~~~~v~~G~~v~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~ 148 (291)
T 2wim_A 77 CQATDAKGQTQEATVVLEIYQKLTFR-------EVVSPQEFKQGEDAEVVCRV-SSSPAPAVSWLYHNEEVTTISDNRFA 148 (291)
T ss_dssp EEEECSSSCEEEEEEEEEEECCCBCC-------SCCCSEEEETTSCEEECCCC-BCSSCCEEEEECC----CBCCCSSEE
T ss_pred EEEecccCceEEEEEEEEecCCcceE-------eCCCChhhcCCCCEEEEEEE-ccCCCCEEEEEECCccccccCCceEE
Confidence 9999877764 456677776654221 22344678899999999999 688999999999987764321 111
Q ss_pred EeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCcc--CCcee
Q psy14540 156 IRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVAS--DNHSS 233 (291)
Q Consensus 156 ~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~--~~~~~ 233 (291)
.. ....|.|.++..+|+|.|+|.+.+..+. ....+
T Consensus 149 ~~-------------------------------------------~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~~~~~~ 185 (291)
T 2wim_A 149 ML-------------------------------------------ANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDI 185 (291)
T ss_dssp EC-------------------------------------------TTSCEEETTCCGGGCEEEEEEEEETTTTEEEEEEE
T ss_pred Ec-------------------------------------------cCCCEEEEecchhhCEEEEEEEEECCCCeeEEeeE
Confidence 10 1234777777788888888888876633 33556
Q ss_pred EEEEecCCCCCCCCcc---cccCCceEEEEEEeecCCCCceEEEEECCEEccCC
Q psy14540 234 NLRVNVPPHIGPFTFG---ELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQP 284 (291)
Q Consensus 234 ~l~v~~~p~~~~~~~~---~~~~g~~v~l~C~~~~~~p~~~v~W~~~~~~l~~~ 284 (291)
.+.+..+|.+...... .+.+|+.++|.|.+ .+.|.+.+.|++||..+...
T Consensus 186 ~~~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~-~g~p~p~v~W~~~g~~~~~~ 238 (291)
T 2wim_A 186 IVIVNVPPAISMPQKSFNATAERGEEMTFSCRA-SGSPEPAISWFRNGKLIEEN 238 (291)
T ss_dssp EEEEEBCCCCBCSCSEEECCSSSCCEEEEECBC-CCBSCCEEEEEETTEECCCT
T ss_pred EEEeccCCccccCcccccceecCCCeEEEEEEe-ecCCCCeEEEEECCEECcCC
Confidence 7777888887665542 38899999999999 88999999999999998643
No 25
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Probab=100.00 E-value=4.5e-33 Score=231.66 Aligned_cols=262 Identities=22% Similarity=0.292 Sum_probs=188.5
Q ss_pred CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEE-CCeecCC-CeeEeceEEeeccceEEEEEEeecCCCCCe-EEE
Q psy14540 2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKL-DGYPLAG-DRFVMGQYMSLHGDVISHVNISSVRVEDSG-IYQ 78 (291)
Q Consensus 2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~-~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G-~y~ 78 (291)
||.+...+....+.+|+.+.|.|.+.+.+.+.+.|++ +|..+.. .++.. ... ..|.|.+++..|+| .|+
T Consensus 114 p~~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~v~W~~~~g~~l~~~~~~~~-----~~~---~~L~i~~~~~~d~G~~Y~ 185 (524)
T 2ec8_A 114 PAKLFLVDRSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLPKDLRFIP-----DPK---AGIMIKSVKRAYHRLCLH 185 (524)
T ss_dssp SSCSBCCCCCCCEETTSCEEECCCBSCCCCSCEEEECSSSCCCCSSCEEEE-----ETT---TEEEEESCCGGGTTCEEE
T ss_pred CCcccccccceEEEcCCeEEEECcCCCCccceEEEEccCCcCcCCCCceeE-----CCC---ccEEEeccchhhCCceEE
Confidence 4555567777889999999999999886668999998 7877763 22222 111 24899999999999 999
Q ss_pred EEEeCCCCce-eeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCce-eEEeECCEec--cCCCce
Q psy14540 79 CTATNRVGSQ-THSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLT-ISWLKNGLPI--LSDAEI 154 (291)
Q Consensus 79 C~~~~~~~~~-~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~-~~W~~~~~~~--~~~~~~ 154 (291)
|.+.+..+.. +..+.|.|...+..+ ......+....+.+|+.+.|.|.+ .+.|.+. +.|++++..+ ......
T Consensus 186 C~a~n~~~~~~s~~~~l~V~~~~~~~---p~i~~~~~~~~v~~G~~v~L~C~~-~g~p~p~~i~W~~~~~~~~~~~~~~~ 261 (524)
T 2ec8_A 186 CSVDQEGKSVLSEKFILKVRPAFKAV---PVVSVSKASYLLREGEEFTVTCTI-KDVSSSVYSTWKRENSQTKLQEKYNS 261 (524)
T ss_dssp EEEC----CCCCCCEECCEECCCCSC---CEEECSCSEEEEETTSCEEEEEEE-EESSTTCEEEEEETTCSCCCCEEEEE
T ss_pred EEEEECCceEEEEEEEEEEEeCCCCC---CcEEecCCcceEEcCCcEEEEEEE-ecCCCcEEEEEEeCCCCCcccccccc
Confidence 9999776554 346677776322221 122233445678899999999999 4777776 9999999873 322222
Q ss_pred EEecc--CCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEec--------------------------------
Q psy14540 155 TIRSS--GEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNE-------------------------------- 200 (291)
Q Consensus 155 ~~~~~--~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~-------------------------------- 200 (291)
..... ......|.|.++..+|.|.|+|.+.|..|.......+.+..
T Consensus 262 ~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~v~~G~~v~l~C~~~g~P 341 (524)
T 2ec8_A 262 WHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFINIFPMINTTVFVNDGENVDLIVEYEAFP 341 (524)
T ss_dssp EECSSSCEEEEEEEEESSCCTTTCEEEEEEEECSSCEEEEEEEEEEESSCEEEEEESSCSEEEECTTCCEEEEEEEEEES
T ss_pred ccccCCccceEEEEEECCCCHHHCEEEEEEEEecCCceEEEEEEEEeccCceEeecCCCceEEEcCCCcEEEEEEEeecC
Confidence 22211 12357899999999999999999999887654444333100
Q ss_pred -------------------------------cceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCCCCCCCCcc
Q psy14540 201 -------------------------------YTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGPFTFG 249 (291)
Q Consensus 201 -------------------------------~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p~~~~~~~~ 249 (291)
....|.|.++..+|+|.|+|.|.|..+..+.++.|.|..+|.+.....
T Consensus 342 ~p~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~P~i~~~~~- 420 (524)
T 2ec8_A 342 KPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVNTKPEILTYDR- 420 (524)
T ss_dssp CCCEEEEESSSCBCSSSBCCEESCCSSSCCEEEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEECEEEEEEEEEC-
T ss_pred CCcEEEEEECCeeccCCccceeEEccCCCceeEEEEEEeecCcccCeEEEEEEEecCceEEEEEEEEEecCCeEeeccc-
Confidence 124799999999999999999999999988999999998887765443
Q ss_pred cccCCceEEEEEEeecCCCCceEEEEECCEEc
Q psy14540 250 ELMEGVRTQVACVVQSGDLPLSLQWYKNGLAI 281 (291)
Q Consensus 250 ~~~~g~~v~l~C~~~~~~p~~~v~W~~~~~~l 281 (291)
..+| +|.|.+ .|.|.|.|+|+++|..+
T Consensus 421 -~~~g---~l~C~~-~g~P~p~i~W~~~~~~~ 447 (524)
T 2ec8_A 421 -LVNG---MLQCVA-AGFPEPTIDWYFCPGTE 447 (524)
T ss_dssp -CSSS---CEEEEE-EEESCCEEECCCC----
T ss_pred -CcCc---EEEEEE-EeecCCEEEEEECCCcc
Confidence 4455 999999 89999999999997665
No 26
>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1
Probab=100.00 E-value=3.7e-32 Score=221.39 Aligned_cols=273 Identities=16% Similarity=0.270 Sum_probs=180.8
Q ss_pred cceeecceeeeecCCcEEEEEEecCCCC----CeeEEEECC--eecC----C-----CeeEeceEEeeccceEEEEEEee
Q psy14540 4 QLIYKFIQQTLQPGPPVSLKCIATGNPT----PHISWKLDG--YPLA----G-----DRFVMGQYMSLHGDVISHVNISS 68 (291)
Q Consensus 4 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~----~~v~W~~~~--~~~~----~-----~~~~~~~~~~~~~~~~~~l~i~~ 68 (291)
.|+..|..+.+.+|++++|.|.+.+.+. +.+.|++++ ..+. . ..+ ..+.........++|.|.+
T Consensus 3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~-~~r~~~~~~~~~~~L~I~~ 81 (438)
T 1qgc_4 3 VLTQSPASLAVSLGQRATISCRASESVDSSGHSFMHWYQQKPGQPPKLLIYRASNLESGI-PDRFSGSGSRTDFTLTIDP 81 (438)
T ss_dssp CEEEECSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEESSSSCBCSSC-CTTEEEEEETTEEEEEESS
T ss_pred ceEecCCeEEeeCCCCEEEEEecCCCcccCCcceEEEEEECCCCCcEEEEEECcccCCCc-cCcEEEEccCCcEEEEeCC
Confidence 4567788899999999999999987665 489999963 2210 0 000 0111111233457799999
Q ss_pred cCCCCCeEEEEEEeCCCCc-eeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCc-eeEEeECCE
Q psy14540 69 VRVEDSGIYQCTATNRVGS-QTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPL-TISWLKNGL 146 (291)
Q Consensus 69 ~~~~d~G~y~C~~~~~~~~-~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~~~~ 146 (291)
++.+|+|.|+|.+.+..+. ....+.+.|......|. .....+. ....+|+.+.|.|.+..+.|.+ .+.|+++|.
T Consensus 82 v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~~~P~---v~~~~~~-~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~ 157 (438)
T 1qgc_4 82 VEADDVATYYCQQSNEVPLTFGAGTKLDLKRADAAPT---VSIFPPS-SEQLTSGGASVVCFLNNFYPKDINVKWKIDGS 157 (438)
T ss_dssp CCGGGCEEEEEEECSSTTCCBCCCEEEEECCCCBCCE---EEEECCC-HHHHHTTEEEEEEEEEEEBSSCEEEEEEETTE
T ss_pred CcCcCCeeEEEEEecCCCccccCceeEEecCCCCCCE---EEecCCC-hhhccCCceEEEEEEccccCCCcEEEEEECCE
Confidence 9999999999999987653 24456677754332221 1111111 2233578999999995547777 999999999
Q ss_pred eccCCCceE--EeccCCc----eEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEE-----------------------
Q psy14540 147 PILSDAEIT--IRSSGEY----TSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLR----------------------- 197 (291)
Q Consensus 147 ~~~~~~~~~--~~~~~~~----~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~----------------------- 197 (291)
.+....... ......+ ...|.|..+..+|+|.|+|.|.|..+.......+.
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~ 237 (438)
T 1qgc_4 158 ERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNECEVMLVESGGGLVKPGGSLK 237 (438)
T ss_dssp EECTTEEEEEECCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCSSCEEEEEETTC-CCEEEEECCEEECTTCCEE
T ss_pred EcCCCceeccccccCCCCcEEEEEEEEEeCcccCCCCeEEEEEEecccCCceecccccccceeEEecCCceEEecCCcEE
Confidence 886552111 1111111 35799999999999999999999877632211111
Q ss_pred ----Ee--------------------------------------------------ccceEEEEeeeecCCCeeEEEEee
Q psy14540 198 ----VN--------------------------------------------------EYTSSLSIATLSTGHSGNYTCVAS 223 (291)
Q Consensus 198 ----~~--------------------------------------------------~~~~~l~i~~~~~~~~g~y~C~~~ 223 (291)
+. .....|.|.++..+|+|.|+|.|.
T Consensus 238 L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~ 317 (438)
T 1qgc_4 238 LSCTASGFIFNRCAMSWVRQTPEKRLEWVATISSGGTYTYYPDSVKGRFTISRDNAKNTLYLQMSSLRSADTAMYYCVRR 317 (438)
T ss_dssp EEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCCEECCGGGTTTEEEEEETTTTEEEEEECSCCGGGCCEEEEEEC
T ss_pred EEEEEcccccCCcEEEEEECCCCCCcEEEEEEeecCCceecCcccCCcEEEEeecCCCeEEEEECCCChhhCEEEEEEEE
Confidence 00 001278889999999999999999
Q ss_pred eCCc-----cCCceeEEEEec----CCCCCCCC-cccccCCceEEEEEEeecCC-CCc-eEEEEECCEEcc
Q psy14540 224 NTVA-----SDNHSSNLRVNV----PPHIGPFT-FGELMEGVRTQVACVVQSGD-LPL-SLQWYKNGLAIS 282 (291)
Q Consensus 224 ~~~~-----~~~~~~~l~v~~----~p~~~~~~-~~~~~~g~~v~l~C~~~~~~-p~~-~v~W~~~~~~l~ 282 (291)
|..+ .......+.|.. +|.+.... ...+.+|+.++|.|.+ .|. |.+ .|.|++||..+.
T Consensus 318 n~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~-~g~~P~~~~v~W~~~g~~~~ 387 (438)
T 1qgc_4 318 EDGGDEGFAYWGQGTVVTVSAAKTTPPSVYPLAPGSAAAAASMVTLGCLV-KGYFPEPVTVTWNSGSLSSG 387 (438)
T ss_dssp CSSSCCCCCSBCCCEEEEECSSCCBCCEEEEECCCGGGCCSSEEEEEEEE-ESCBSSCCEEEEGGGTCCSS
T ss_pred ccCCCccceeeCCCEEEEEecCCCCCCeEEEcCcccccccCCcEEEEEEe-ccccCCCcEEEEecCCCCCc
Confidence 8443 223445677763 34333322 2337789999999999 565 877 999999998874
No 27
>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}
Probab=99.97 E-value=3.8e-32 Score=212.08 Aligned_cols=227 Identities=19% Similarity=0.278 Sum_probs=152.4
Q ss_pred CCCcceeecceeeeecCCcEEEEEEecCC-CCCeeEEEECCeecCC-CeeEeceEEeeccceEEEEEEeecCCCCCeEEE
Q psy14540 1 SHPQLIYKFIQQTLQPGPPVSLKCIATGN-PTPHISWKLDGYPLAG-DRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQ 78 (291)
Q Consensus 1 s~p~~~~~~~~~~v~~g~~v~l~C~~~~~-~~~~v~W~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~ 78 (291)
.+|.|.. +.+..+.+|+.++|.|.+.+. |.+.+.|++++..+.. .++.. ......|.|.+++.+|+|.|+
T Consensus 6 ~~P~~~~-~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~-------~~~~~~L~i~~~~~~d~G~Y~ 77 (317)
T 2y25_A 6 TGPHFVE-YLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDF-------KDGICTLLITEFSKKDAGIYE 77 (317)
T ss_dssp SCCEEEE-EEEEEEETTTEEEEEEEEESCCTTCEEEEEETTEEECCSCC------------CCEEEEETTCCSTTCSCEE
T ss_pred CCCcEee-eeeEEECCCCeEEEEEEEcCCCCCCEEEEEECCeEcCCCCcEEE-------ECCeEEEEEccCCcccCeEEE
Confidence 3688874 556899999999999999885 7789999999988873 32222 122367999999999999999
Q ss_pred EEEeCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCC----------CCCceeEEeECCEec
Q psy14540 79 CTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKG----------DPPLTISWLKNGLPI 148 (291)
Q Consensus 79 C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~----------~p~~~~~W~~~~~~~ 148 (291)
|.+.+..+.....+.+.|...+. .........+.+|+.+.|.|.+ .+ .|.+.+.|++++..+
T Consensus 78 C~~~n~~g~~~~~~~l~v~~~~~-------~~~~~~~~~~~~g~~~~l~c~~-~~~~l~c~~~~~~p~~~i~W~~~~~~~ 149 (317)
T 2y25_A 78 VILKDDRGKDKSRLKLVDEAFKE-------LMMEVCKKIALSATDLKIQSTA-EGIQLYSFVTYYVEDLKVNWSHNGSAI 149 (317)
T ss_dssp EEEESSSCEEEEEECCSTHHHHH-------HHHHHHHHHHTCBCCCEEEECS-SEEEEEEEBSSCCSSCEEEEEESSSBC
T ss_pred EEEECCCCcEEEEEEEEEecCcc-------ccccCCceecccCCCeEEEeec-cccEEEEEeccCCCCcEEEEEECCEEC
Confidence 99998877665555444432210 0011122344566666666665 33 789999999999888
Q ss_pred cCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCcc
Q psy14540 149 LSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVAS 228 (291)
Q Consensus 149 ~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~ 228 (291)
....+......+. ...|.|.++..+|+|.|+|.|.|..+.
T Consensus 150 ~~~~~~~~~~~~~----------------------------------------~~~L~i~~~~~~d~G~Y~C~a~n~~g~ 189 (317)
T 2y25_A 150 RYSDRVKTGVTGE----------------------------------------QIWLQINEPTPNDKGKYVMELFDGKTG 189 (317)
T ss_dssp CCCSSEEEEECSS----------------------------------------EEEEEEESCCGGGCEEEEEEEECSSCE
T ss_pred CCCCCeEEeccCC----------------------------------------EEEEEECcCCcccCeeEEEEEEeCCce
Confidence 6655443322111 234666666666677777777766655
Q ss_pred CCceeEEEEec--------------------CCCCCCC-Ccc-cccCCceEEEEEEeecCCCCceEEEEECCEEccCC
Q psy14540 229 DNHSSNLRVNV--------------------PPHIGPF-TFG-ELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQP 284 (291)
Q Consensus 229 ~~~~~~l~v~~--------------------~p~~~~~-~~~-~~~~g~~v~l~C~~~~~~p~~~v~W~~~~~~l~~~ 284 (291)
....+.+.+.. +|.+... +.. .+.+|+.++|.|.+ .|.|.+.+.|+++|..+...
T Consensus 190 ~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~-~g~p~p~i~W~~~g~~~~~~ 266 (317)
T 2y25_A 190 HQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNV-WGDPPPEVSWLKNEKALASD 266 (317)
T ss_dssp EEEEEEECHHHHHHHHHHHHHHHHHHHHTTTSCEEEEBCCSEEEEETTSBBCEEEEE-ECSSCCEEEEEESSSEECCC
T ss_pred EEEEEEEeeeeccccchhhcccCCcccCcCCCCcccccCCccEEEEcCCEEEEEEEE-ecCCCCEEEEEECCEeCCCC
Confidence 55555544321 1222222 222 38899999999999 89999999999999988654
No 28
>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}
Probab=99.97 E-value=7e-31 Score=205.77 Aligned_cols=237 Identities=20% Similarity=0.312 Sum_probs=158.2
Q ss_pred CcceeecceeeeecCCcEEEEEEecCC-CCCeeEEEECCeecCC----------CeeEeceEEeeccceEEEEEEeecCC
Q psy14540 3 PQLIYKFIQQTLQPGPPVSLKCIATGN-PTPHISWKLDGYPLAG----------DRFVMGQYMSLHGDVISHVNISSVRV 71 (291)
Q Consensus 3 p~~~~~~~~~~v~~g~~v~l~C~~~~~-~~~~v~W~~~~~~~~~----------~~~~~~~~~~~~~~~~~~l~i~~~~~ 71 (291)
..|+..|..+.+.+|+++.|.|.+.+. |.+.+.|++++..... .++..............+|.|.+++.
T Consensus 4 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~ 83 (327)
T 2wng_A 4 LQVIQPDKSVSVAAGESAILHCTVTSLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSESTKRENMDFSISISNITP 83 (327)
T ss_dssp CCEECCCSEEEEETTSCEEECCEESCCCSCCCEEEEESCSTTCEEEEETTSSCCTTEEECC---CTTCCBCCEEECSCCG
T ss_pred eEEEcCCCceEEecCCcEEEEEEccCcCCCceEEEEECCCCCceEEEEcCCCCcceeeeecccccccCceeEEEEccCcc
Confidence 456777888999999999999999986 8889999998754320 01111111111113346799999999
Q ss_pred CCCeEEEEEEeCCCCc-----eeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCc--eeEEeEC
Q psy14540 72 EDSGIYQCTATNRVGS-----QTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPL--TISWLKN 144 (291)
Q Consensus 72 ~d~G~y~C~~~~~~~~-----~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~--~~~W~~~ 144 (291)
+|+|.|+|.+.+..+. ....+.|.|...+..|. . ..+ ...+.+|+.+.|.|.+. +.|++ .+.|+++
T Consensus 84 ~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~p~~p~----i-~~~-~~~~~~g~~~~l~C~~~-g~p~~~~~v~W~k~ 156 (327)
T 2wng_A 84 ADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPV----V-SGP-AARATPQHTVSFTCESH-GFSPRDITLKWFKN 156 (327)
T ss_dssp GGCEEEEEEEEESSTTCEEEEECCCEEEEEEBCCCCCE----E-ECC-SSCBCTTCEEEEEEEEE-EEBSSCCEEEEEET
T ss_pred ccCeEEEEEeecCCCcceeEeecCcEEEEEEecCCCce----e-ecc-ccccCCCCEEEEEEEEe-CccCCCcEEEEEEC
Confidence 9999999999876553 22456788887664431 1 112 25678899999999995 55544 8999999
Q ss_pred CEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeee
Q psy14540 145 GLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASN 224 (291)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~ 224 (291)
|..+........ ...+.|.|.. .+.|.|.....+|+|.|+|.|.|
T Consensus 157 g~~l~~~~~~~~---------------~~~~~~~~~~--------------------~s~L~i~~~~~d~~g~Y~C~a~n 201 (327)
T 2wng_A 157 GNELSDFQTNVD---------------PVGESVSYSI--------------------HSTAKVVLTREDVHSQVICEVAH 201 (327)
T ss_dssp TEECCCEEEEEE---------------CSSCCSCEEE--------------------EEEEEEECCTTGGGCEEEEEEEC
T ss_pred CEEccccccccc---------------cccCCCceEE--------------------EEEEEEechhcCcCceEEEEEec
Confidence 988754321111 0112333432 23466666666778888888888
Q ss_pred CCccC---CceeEE--EEecCCCCCCCCcccccCCceEEEEEEeecC-CCCc-eEEEEECCEEccC
Q psy14540 225 TVASD---NHSSNL--RVNVPPHIGPFTFGELMEGVRTQVACVVQSG-DLPL-SLQWYKNGLAISQ 283 (291)
Q Consensus 225 ~~~~~---~~~~~l--~v~~~p~~~~~~~~~~~~g~~v~l~C~~~~~-~p~~-~v~W~~~~~~l~~ 283 (291)
..+.. ..+..+ .+..+|.+...+.. +.+|+.++|.|.+ .+ +|++ .|.|++||+++..
T Consensus 202 ~~~~~~~~~~~~~~~~~v~~~P~i~~~~~~-~~~G~~v~l~C~~-~g~~p~~~~v~W~k~g~~l~~ 265 (327)
T 2wng_A 202 VTLQGDPLRGTANLSETIRVPPTLEVTQQP-VRAENQVNVTCQV-RKFYPQRLQLTWLENGNVSRT 265 (327)
T ss_dssp TTSCSCCEEEEEEGGGTBCBCCEEEEEEEC-CSSTTCCEEEEEE-EEEBSSCEEEEEEETTEEEEE
T ss_pred cccCCCcccceEEeccccCCCCEEEEecCC-cCCCCcEEEEEEE-ccccCCCcEEEEEECCeEccC
Confidence 76542 122222 34556666554433 7899999999999 55 4554 8999999998853
No 29
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Probab=99.97 E-value=2.5e-30 Score=196.32 Aligned_cols=209 Identities=18% Similarity=0.271 Sum_probs=160.0
Q ss_pred CCcceeecceeeeecCCcEEEEEEecCCCCC-eeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEE
Q psy14540 2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTP-HISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCT 80 (291)
Q Consensus 2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~ 80 (291)
+|.|...|....+.+|+.+.|.|.+.+.+.+ .+.|++++..+... ...|.|.+++.+|+|.|+|.
T Consensus 1 kP~i~~~p~~~~v~~G~~v~l~C~~~~~~~~~~~~W~~~g~~~~~~--------------~~~l~i~~~~~~d~G~Y~C~ 66 (262)
T 3rjd_A 1 KAVITLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTS--------------TPSYRITSASVNDSGEYRCQ 66 (262)
T ss_dssp CCEEEESSCCSEEETTCCEEEEEECSSCCCTTCEEEEETTEECSCC--------------SSEEEESSCCGGGCEEEEEE
T ss_pred CCeEecCCCcEEeeCCCeEEEEEECCCCCCCceEEEEECCEEeecc--------------CCeEEEecCCcccCeEEEEE
Confidence 5889999999999999999999999887776 89999999887632 13378999999999999999
Q ss_pred EeCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccC
Q psy14540 81 ATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSG 160 (291)
Q Consensus 81 ~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~ 160 (291)
+.+..+ +..+.+.|...+ .. ..+....+.+|+.+.|.|.+..+.|.+.+.|++++..+...
T Consensus 67 ~~~~~~--s~~~~l~v~~~~------~~--~~~~~~~~~~g~~v~l~C~~~~~~p~~~v~W~~~g~~~~~~--------- 127 (262)
T 3rjd_A 67 RGLSGR--SDPIQLEIHRGW------LL--LQVSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFF--------- 127 (262)
T ss_dssp ESSSCC--CCCEEEEEECSS------EE--EEESCSEEETTSCEEEEEEEGGGCCCEEEEEEETTEEEEEE---------
T ss_pred EecCCc--cccEEEEEeccc------eE--ecCCCeEEecCCeEEEEEEccCCCCCceEEEEECCcccccc---------
Confidence 986544 345566666432 11 12233567799999999999668888999999998775211
Q ss_pred CceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEec-
Q psy14540 161 EYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNV- 239 (291)
Q Consensus 161 ~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~- 239 (291)
.....|.|.++..+|+|.|+|.+.|..+..+..+.|.|..
T Consensus 128 ---------------------------------------~~~~~l~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~V~~~ 168 (262)
T 3rjd_A 128 ---------------------------------------HWNSNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKEL 168 (262)
T ss_dssp ---------------------------------------EECCCEEESSCCGGGCEEEEEEEESSSEEEEECEEEEEECS
T ss_pred ---------------------------------------CCCCeEEEEECChhhCEEEEEEEeCCCCccccceEEEeccC
Confidence 0023577788888888889999988887777777888874
Q ss_pred --CCCCCCCCcccccCCceEEEEEEeecCCCC-c----eEEEEECCEEccC
Q psy14540 240 --PPHIGPFTFGELMEGVRTQVACVVQSGDLP-L----SLQWYKNGLAISQ 283 (291)
Q Consensus 240 --~p~~~~~~~~~~~~g~~v~l~C~~~~~~p~-~----~v~W~~~~~~l~~ 283 (291)
+|.+...+...+.+|+.++|+|.+ .+.|. + .+.|+++|..+..
T Consensus 169 ~~~p~~~~~~~~~~~~g~~~~l~C~~-~~~p~~p~~~~~~~w~~~~~~~~~ 218 (262)
T 3rjd_A 169 FPAPVLNASVTSPLLEGNLVTLSCET-KLLLQRPGLQLYFSFYMGSKTLRG 218 (262)
T ss_dssp SCCCEEEESSCSSEETTCCEEEEEEC-CCCCC-----EEEEEEETTEEEEE
T ss_pred CCCCeEeecCceeecCCCeEEEEeEc-ccCCCCCCccEEEEEEeCCcEecc
Confidence 455555554448899999999999 77664 4 4799999998863
No 30
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4
Probab=99.97 E-value=3.2e-30 Score=210.66 Aligned_cols=245 Identities=18% Similarity=0.258 Sum_probs=167.2
Q ss_pred cceeecceeeeecCCcEEEEEEecCCCCCee-----EEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEE
Q psy14540 4 QLIYKFIQQTLQPGPPVSLKCIATGNPTPHI-----SWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQ 78 (291)
Q Consensus 4 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v-----~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~ 78 (291)
+|.+.|....+.+|++++|.|.+.+ |.+.+ .|+|++..+.... ...|.|.+++. |+| |+
T Consensus 1 ~i~~~P~~~~v~~G~~v~L~C~~~g-p~p~~~~~~~~w~k~~~~~~~~~-------------~~~l~i~~v~~-d~g-Y~ 64 (450)
T 1z7z_I 1 QTSVSPSKVILPRGGSVLVTCSTSC-DQPMLLGIETPLPKKELLLPGNN-------------RKVYELSNVQE-DSQ-PM 64 (450)
T ss_dssp CCEEESSEEEEETTEEEEEEEECCS-SCCCEEEECSSSCEEECCSSTTT-------------EEEEEEEEECS-CBC-CE
T ss_pred CcccCCCceEEecCCcEEEEEEccC-CCcccccccceeeecceEecCCC-------------ceEEEEEeccc-CCe-eE
Confidence 3678899999999999999999998 77888 8998876443221 13588999987 999 99
Q ss_pred EEEeCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCc---eeEEeECCEeccCCCceE
Q psy14540 79 CTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPL---TISWLKNGLPILSDAEIT 155 (291)
Q Consensus 79 C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~---~~~W~~~~~~~~~~~~~~ 155 (291)
|.+.+..+..+..+.|.|...|. .....+....+.+|+.+.|.|.+ .+.|.+ .+.|++++..+.....
T Consensus 65 C~a~~~~~~~~~~~~l~V~~~P~------~~~~~~~~~~v~~G~~v~L~C~~-~g~~~~~~~~v~W~k~g~~l~~~~~-- 135 (450)
T 1z7z_I 65 CYSNCPDGQSTAKTFLTVYWTPE------RVELAPLPSWQPVGKNLTLRCQV-EGGAPRANLTVVLLRGEKELKREPA-- 135 (450)
T ss_dssp EEEEETTEEEEEECEEEEEBCCS------EEEECCCCSEECTTSEEEEEEEE-ECCBCGGGEEEEEEETTEEEEEEEC--
T ss_pred EEEeCCCCcceeEEEEEEEeCCC------cceecCCCceEeeCCeEEEEEEe-cCCCCCcCcEEEEeeCCEEeecccc--
Confidence 99986655677778888887542 12123344678899999999999 566666 8999999988754321
Q ss_pred EeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCC--------ceEEE----------------------------Ee
Q psy14540 156 IRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNH--------SSNLR----------------------------VN 199 (291)
Q Consensus 156 ~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~--------~~~~~----------------------------~~ 199 (291)
........|.|..+..+|.|.|+|.+.|..|.... ...+. +.
T Consensus 136 --~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~s~~~~l~v~~~~~~~p~~~~~~~v~~G~~v~l~C~~~ 213 (450)
T 1z7z_I 136 --VGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLD 213 (450)
T ss_dssp --CTTTEEEEEEEECCSSCSSCEEEEEEEEECGGGTSCEEEEECCCEECEECCCCSSCCEEECCSEEETTSEEEEEEEEE
T ss_pred --cccccceEEEEEeeccccCceEEEEEEcccCCCCceEEeeccCccceeeeccCCCCCEecCceeEEeCCcEEEEEEee
Confidence 11223568999999999999999999998653221 11100 00
Q ss_pred cc------------------------ceEEEEe---eeecCCCe--eEEEEeeeCCccCCceeEEEEec--CCCCCCCCc
Q psy14540 200 EY------------------------TSSLSIA---TLSTGHSG--NYTCVASNTVASDNHSSNLRVNV--PPHIGPFTF 248 (291)
Q Consensus 200 ~~------------------------~~~l~i~---~~~~~~~g--~y~C~~~~~~~~~~~~~~l~v~~--~p~~~~~~~ 248 (291)
.. ...+.+. ++..+|+| .|+|.+.|..+.......|.|.. +|.+... .
T Consensus 214 g~~P~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~G~~~Y~C~a~n~~g~~~~~~~l~V~~~~~p~i~~~-~ 292 (450)
T 1z7z_I 214 GLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILT-K 292 (450)
T ss_dssp SCTTGGGCEEEEEETTEECCCEEEEETTEEEEEEEEECCGGGCEEEEEEEEEEETTEEEEEEEEEEEECCCCCEEEES-C
T ss_pred CCCCCCceEEEEeCCCEeCCceEEecCCceeEEEEEEeEhhhCCcEEEEEEEccCCccEEEEEEEEEecCCCCeEecC-C
Confidence 00 0011111 55789999 99999999988887788888876 4444332 2
Q ss_pred ccccCCceEEEEEEeecCCCCceEEEEECCEEc
Q psy14540 249 GELMEGVRTQVACVVQSGDLPLSLQWYKNGLAI 281 (291)
Q Consensus 249 ~~~~~g~~v~l~C~~~~~~p~~~v~W~~~~~~l 281 (291)
..+.+|+.++|.|.+ . |.+.++| +|.++
T Consensus 293 ~~v~~G~~v~l~C~~-~--p~p~i~W--~g~~~ 320 (450)
T 1z7z_I 293 PEVSEGTEVTVKCEA-H--PRAKVTL--NGVPA 320 (450)
T ss_dssp SEEETTCEEEEEEEC------------------
T ss_pred eeEeCCCcEEEEEec-C--CCCEeEE--CCEEc
Confidence 248999999999999 4 8899999 88877
No 31
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R
Probab=99.97 E-value=9.9e-32 Score=233.43 Aligned_cols=265 Identities=23% Similarity=0.358 Sum_probs=66.1
Q ss_pred cceeecce-eeeecCCcEEEEEEecC--CCCCeeEEEECCeecCCCeeEece-EEe---eccceEEEEEEeecCCCCCeE
Q psy14540 4 QLIYKFIQ-QTLQPGPPVSLKCIATG--NPTPHISWKLDGYPLAGDRFVMGQ-YMS---LHGDVISHVNISSVRVEDSGI 76 (291)
Q Consensus 4 ~~~~~~~~-~~v~~g~~v~l~C~~~~--~~~~~v~W~~~~~~~~~~~~~~~~-~~~---~~~~~~~~l~i~~~~~~d~G~ 76 (291)
.+.+.+.. ..+.+|+.++|.|.+.+ .+.+.+.|++++..+......... ... ......+.|.|.+++.+|+|.
T Consensus 225 ~v~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~ 304 (772)
T 3v2a_R 225 DVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGL 304 (772)
T ss_dssp EEEEECCSCEEEETTCCEEEEEEEEECTTCCCEEEEECC--------CEEEEC-----CCCEEEEEEEEESSCCSTTCSE
T ss_pred eeeeCCCCceEEecCCcEEEEEEEecCCCCceeEEEecCCccCCCceeeeccccccccccceEEEEEEEECcCCcCCCeE
Confidence 34444443 68999999999999986 456789999998876532111100 000 122345789999999999999
Q ss_pred EEEEEeCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEE
Q psy14540 77 YQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITI 156 (291)
Q Consensus 77 y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~ 156 (291)
|+|.+.+..+.....+.|.|...|... ..........+.+|+.+.|.|.+ .+.|.+.+.|+++|..+.......
T Consensus 305 Y~C~~~~~~~~~~~~~~l~V~~~p~~~----~~~~~~~~~~v~~G~~v~l~C~~-~~~p~~~v~W~~~g~~l~~~~~~~- 378 (772)
T 3v2a_R 305 YTCAASSGLMTKKNSTFVRVHEKPFVA----FGSGMESLVEATVGERVRIPAKY-LGYPPPEIKWYKNGIPLESNHTIK- 378 (772)
T ss_dssp EEEEEECSSCEEEEEEEEEEECCCC-------------------------------------------------------
T ss_pred EEEEEEcCCcceeEEEEEEEeCCCeeE----eccCCCCcEEEcCCCcEEEEEEE-eeeCCCeEEEEECCEeCCCCceEc-
Confidence 999999888877888888888765322 11112234668899999999999 688999999999998876532221
Q ss_pred eccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCC--ceEEEEec----------------------------------
Q psy14540 157 RSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNH--SSNLRVNE---------------------------------- 200 (291)
Q Consensus 157 ~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~--~~~~~~~~---------------------------------- 200 (291)
....|.|..+..+|.|.|+|.+.|..|.... .+.+.+..
T Consensus 379 -----~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~~~l~v~~~P~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p 453 (772)
T 3v2a_R 379 -----AGHVLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPP 453 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -----cceeEEEecCChhcCceEEEEEEECCcCeEEEEEEEEEEecCCcccccccCCCccccCCCCcEEEEeEeccCCCC
Confidence 2467999999999999999999998765422 11111000
Q ss_pred --c---------------------------------------------------------ceEEEEeeeecCCCeeEEEE
Q psy14540 201 --Y---------------------------------------------------------TSSLSIATLSTGHSGNYTCV 221 (291)
Q Consensus 201 --~---------------------------------------------------------~~~l~i~~~~~~~~g~y~C~ 221 (291)
. ...|.|..+ +|+|.|+|.
T Consensus 454 ~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~L~i~~~--~d~G~Y~C~ 531 (772)
T 3v2a_R 454 HHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAA--NVSALYKCE 531 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cEEEEEEcCCccccccccccccccCcCccccccccccccCCCcEEEeccceeeccCcceEEEEEEEeec--ccCeEEEEE
Confidence 0 023333333 689999999
Q ss_pred eeeCCccCCceeEEEEecCCCCCCCCcccccCCceEEEEEEeecCCCCceEEEEECCEEcc
Q psy14540 222 ASNTVASDNHSSNLRVNVPPHIGPFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAIS 282 (291)
Q Consensus 222 ~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~g~~v~l~C~~~~~~p~~~v~W~~~~~~l~ 282 (291)
|.|..|.....+.|.|..+|.+...+...+.+|+.+.|.|.+ .+.|.+.+.|+|+|..+.
T Consensus 532 a~N~~g~~~~~~~l~V~~~p~i~~~p~~~~~~G~~v~l~C~~-~~~p~~~v~W~k~~~~~~ 591 (772)
T 3v2a_R 532 AVNKVGRGERVISFHVTRGPEITLQPDMQPTEQESVSLWCTA-DRSTFENLTWYKLGPQPL 591 (772)
T ss_dssp -------------------------------------------------------------
T ss_pred EEccccccceeEEEEEECCceeeccCCcccccCCceEEEEec-cCCCCCCcEEEEcCCccc
Confidence 999999888889999998888877666568899999999999 888999999999987653
No 32
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E
Probab=99.97 E-value=2.6e-31 Score=211.14 Aligned_cols=232 Identities=15% Similarity=0.175 Sum_probs=167.9
Q ss_pred eeeecCCcEEEEEEecCCCCCeeEEEECCeecC-C--C-eeE------eceEEeec---cceEEEEEEeecCCCCCeEEE
Q psy14540 12 QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLA-G--D-RFV------MGQYMSLH---GDVISHVNISSVRVEDSGIYQ 78 (291)
Q Consensus 12 ~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~-~--~-~~~------~~~~~~~~---~~~~~~l~i~~~~~~d~G~y~ 78 (291)
+.+.+|++++|.|.+.+.|.+.+.|++++..+. . . ... ..+..... ....++|.|.+++.+|+|.|+
T Consensus 4 v~~~~G~~v~L~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~ 83 (363)
T 1wio_A 4 VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYI 83 (363)
T ss_dssp EEEETTSCEEECCCCTTCSSCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCHHHHHTTCCCEEECSCCGGGCEEEE
T ss_pred EEEeCCCeEEEEEEecCCCceEEEEEeCCccceeccCccEEecCCcccccceeeeeccccCCeEEEEECCCCHHHCEEEE
Confidence 578899999999999888889999999885321 0 0 000 00000000 123456999999999999999
Q ss_pred EEEeCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEec
Q psy14540 79 CTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRS 158 (291)
Q Consensus 79 C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~ 158 (291)
|.+.+.. ..+.|.|.... .. ....+.+|+.++|.|.+ .+.|.+.+.|++++..+..
T Consensus 84 C~~~n~~----~~~~l~V~~~~----------~~-~~~~v~~G~~v~l~C~~-~~~p~~~v~W~~~~~~~~~-------- 139 (363)
T 1wio_A 84 CEVEDQK----EEVQLLVFGLT----------AN-SDTHLLQGQSLTLTLES-PPGSSPSVQCRSPRGKNIQ-------- 139 (363)
T ss_dssp EEETTEE----EEEEEEEEEEE----------ES-SCSSEESBSCEEEEEEC-CTTCCCCEEEECSSSCEEE--------
T ss_pred EEEEECC----CcEEEEEEeCC----------CC-CceEEecCCCEEEEEEc-CCCCCCeEEEEcCCCcccc--------
Confidence 9998653 35666665421 11 11356799999999999 5789999999998755411
Q ss_pred cCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEE----------------------E----e-------------
Q psy14540 159 SGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLR----------------------V----N------------- 199 (291)
Q Consensus 159 ~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~----------------------~----~------------- 199 (291)
....|.|.++..+|.|.|+|.+.|..+.....+.+. . .
T Consensus 140 ---~~~~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~l~v~~~p~~~~~~~~~~G~~v~l~C~~~~~~~~~~P~p~i~W~ 216 (363)
T 1wio_A 140 ---GGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQ 216 (363)
T ss_dssp ---ESSEEEECSBCGGGCEECEEEEEETTEEEEECCEECEECCSCSEEEEEEETBCCEEEECCCCCCCCSSCEEEEEEEE
T ss_pred ---cceEEEEeeCChhcCCEEEEEEecCCCeEEEEEEEEEecCCCCCCceEEecCCEEEEEEEEecccccCCCceeEEEe
Confidence 245799999999999999999998643221111111 0 0
Q ss_pred ----------------c-----------------c--ceEEEEeeeecCCCeeEEEEeeeC--CccCCceeEEEEecCCC
Q psy14540 200 ----------------E-----------------Y--TSSLSIATLSTGHSGNYTCVASNT--VASDNHSSNLRVNVPPH 242 (291)
Q Consensus 200 ----------------~-----------------~--~~~l~i~~~~~~~~g~y~C~~~~~--~~~~~~~~~l~v~~~p~ 242 (291)
. . ...|.|.++..+|+|.|+|.|.|. .|..+..+.|.|..
T Consensus 217 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~g~~~~~~~l~V~~--- 293 (363)
T 1wio_A 217 AERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQEVNLVVMR--- 293 (363)
T ss_dssp ESSCCCCCCEEEEEECSSCEEEEEEECSSCCBCCSSSSCEEEESSBCGGGCEEEEEEECBTTTTCCEEEEEEEEEEE---
T ss_pred cCCCCccceEEEEEecCCeeeccccccchhhhcccCCceEEEEccCCcCcCcEEEEEEEEhhhcCeEEEEEeEEEEE---
Confidence 0 0 227888899999999999999999 88888888888762
Q ss_pred CCCCCcccccCCceEEEEEEeecCCCCce--EEEEECCEEccC
Q psy14540 243 IGPFTFGELMEGVRTQVACVVQSGDLPLS--LQWYKNGLAISQ 283 (291)
Q Consensus 243 ~~~~~~~~~~~g~~v~l~C~~~~~~p~~~--v~W~~~~~~l~~ 283 (291)
..|+.++|+|.+ .+.|+|. +.|+++|..+..
T Consensus 294 ---------v~g~~~~l~C~~-~g~p~p~~~i~W~~~~~~~~~ 326 (363)
T 1wio_A 294 ---------ATQLQKNLTCEV-WGPTSPKLMLSLKLENKEAKV 326 (363)
T ss_dssp ---------ECCCSSSEEEEE-ESSCCTTCCEEEECSSSSCSE
T ss_pred ---------ecCCCeeEEEEE-ccccCCCccEEEEeCCCceee
Confidence 128889999999 8888887 999999988754
No 33
>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R
Probab=99.97 E-value=2.2e-30 Score=201.74 Aligned_cols=235 Identities=19% Similarity=0.249 Sum_probs=158.1
Q ss_pred ceeecceeeeecCCcEEEEEEecCCCCC-----eeEEEECCeecCCC--------------eeEeceEEeeccceEEEEE
Q psy14540 5 LIYKFIQQTLQPGPPVSLKCIATGNPTP-----HISWKLDGYPLAGD--------------RFVMGQYMSLHGDVISHVN 65 (291)
Q Consensus 5 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~-----~v~W~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~l~ 65 (291)
++..|..+.+..|++++|.|.+.+.+.+ .+.|+|++...... +..............++|.
T Consensus 3 vv~~P~~v~~~~G~~v~L~C~v~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~ 82 (313)
T 4fqp_A 3 VVQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLR 82 (313)
T ss_dssp EEECCSEECCBTTSCEEECCEEECCTTSCCCCCEEEEEETTSSSCSEEEETTTEEEESSTTTEEESSCCTTSCCCBCCEE
T ss_pred EEcCCCEEEEecCCCEEEEEEEECCCCCccceEEEEEEECCCCcceEEEecCCCceeccCcceEEEeeccCCcccceEEE
Confidence 5667888899999999999999875443 48999987643211 1111000000111235699
Q ss_pred EeecCCCCCeEEEEEEe-CCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeEC
Q psy14540 66 ISSVRVEDSGIYQCTAT-NRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKN 144 (291)
Q Consensus 66 i~~~~~~d~G~y~C~~~-~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~ 144 (291)
|.+++.+|+|.|+|.+. +..+.....+.|.+...|.. ........+..|+.+.+.|.+..+.|.+.+.|+++
T Consensus 83 I~~v~~~D~G~Y~C~v~~~~~~~~~~~~~l~v~~~P~~-------~~~~~~~~~~~~~~~~~~C~~~~~~P~~~i~W~~~ 155 (313)
T 4fqp_A 83 MFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQN-------TAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSD 155 (313)
T ss_dssp ECSCCGGGCEEEEEEEECSSSCEEEEEEEECCBBCCEE-------EEEECCBCCCSSCEEEEEEEEEEEBSCCEEEEEET
T ss_pred ECcCChhhCEEEEEEEeeccCcceeeeeeeeeccCCcc-------eecccceEeecCceEEEEEEccCccCCcEEEeecC
Confidence 99999999999999886 44455666666666654421 11222345667888899998867899999999999
Q ss_pred CEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeee
Q psy14540 145 GLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASN 224 (291)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~ 224 (291)
+..+....... ....|.|.. .+.|.|.....+|+|.|+|.|.|
T Consensus 156 ~~~~~~~~~~~-----------------~~~~~~~~~--------------------~s~l~i~~~~~~d~g~Y~C~a~n 198 (313)
T 4fqp_A 156 LGGMPNTSQVP-----------------GFLSGTVTV--------------------TSLWILVPSSQVDGKNVTCKVEH 198 (313)
T ss_dssp TCCEEEEEEEE-----------------CSSTTCEEE--------------------EEEEEECCCGGGTTCEEEEEEEC
T ss_pred Cccccccceee-----------------eeccccccc--------------------ceeeeecccccccCeeEEEEEEc
Confidence 87664221111 111222221 24577888888999999999998
Q ss_pred CCccCC--ceeEEEEecCCCCCCCCccc--ccCCceEEEEEEeecCCCCc-eEEEEECCEEccCC
Q psy14540 225 TVASDN--HSSNLRVNVPPHIGPFTFGE--LMEGVRTQVACVVQSGDLPL-SLQWYKNGLAISQP 284 (291)
Q Consensus 225 ~~~~~~--~~~~l~v~~~p~~~~~~~~~--~~~g~~v~l~C~~~~~~p~~-~v~W~~~~~~l~~~ 284 (291)
..+... .++.|.|..+|.+....... +.+|+.++|+|.+ .|.|.| .|+|+|+|.+++..
T Consensus 199 ~~~~~~~~~~~~l~V~~~P~v~~~~~~~~~~~~g~~v~l~C~~-~g~P~p~~v~W~~~~~~l~~~ 262 (313)
T 4fqp_A 199 ESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNEATLTCDA-RSNPEPTGYNWSTTMGPLPPF 262 (313)
T ss_dssp TTSSSCEEEEEECCBCEEEEEEEECCCSCEETTCCCEEEEEEE-EEESCCCEEEEEETTBSCCTT
T ss_pred cCcCccceeeeecccccCCccccccccceeecCCCeEEEEEEe-cCCCCCcEEEEEECCEECCCc
Confidence 775543 44556666677664433332 7788999999999 788887 79999999988654
No 34
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Probab=99.97 E-value=3.9e-28 Score=194.68 Aligned_cols=252 Identities=23% Similarity=0.357 Sum_probs=178.9
Q ss_pred CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEEC--CeecCCCee-EeceEEeeccceEEEEEEeecCCCCCeEEE
Q psy14540 2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLD--GYPLAGDRF-VMGQYMSLHGDVISHVNISSVRVEDSGIYQ 78 (291)
Q Consensus 2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~--~~~~~~~~~-~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~ 78 (291)
+|.|.. +.+..+.+|+.+.|.|.+.+.|.+.+.|+++ |..+..... ...............|.|.+++.+|+|.|+
T Consensus 1 ~P~i~~-~~~~~~~~G~~v~l~C~~~g~p~p~v~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~ 79 (389)
T 2jll_A 1 QPHIIQ-LKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYD 79 (389)
T ss_dssp CCEEEE-CCCEEEETTSEEEEEEEEECSSCCEEEEEETTTTEEECC--CCSSSSEEEEECSSEEEEEEESCCGGGCEEEE
T ss_pred CCeEEe-cCceEEeCCCeEEEEEEeecccCCeEEEEeCCCCceeccCcCCCCCeEEEeccCCcceEEEcccChhhCEEEE
Confidence 577776 6677889999999999999999999999999 877753110 011111122234578999999999999999
Q ss_pred EEEeCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCC--ceEE
Q psy14540 79 CTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDA--EITI 156 (291)
Q Consensus 79 C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~--~~~~ 156 (291)
|.+.|..|.....+.|.|...|. .........+.+|+.+.|.|.+ .+.|.+.+.|++++..+.... +...
T Consensus 80 C~a~n~~g~~~~~~~l~V~~~P~-------~~~~~~~~~~~~g~~~~l~C~~-~g~p~~~i~W~~~g~~l~~~~~~~~~~ 151 (389)
T 2jll_A 80 CEAASRIGGHQKSMYLDIEYAPK-------FISNQTIYYSWEGNPINISCDV-KSNPPASIHWRRDKLVLPAKNTTNLKT 151 (389)
T ss_dssp EEEECSSCEEEEEEEEEEEEEEE-------ECCSCCEEEECTTCCEEEEECE-EEESCCEEEEEETTEESSCTTCTTEEE
T ss_pred EEEEeCCCCcceEEEEEEEeCCE-------EecCcceEEeccCCEEEEEEEE-EecCCCeEEEEECCccCCcccCceEEE
Confidence 99999999888888999986552 1123333467899999999999 688999999999999987654 3333
Q ss_pred eccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEE--------------------------------------
Q psy14540 157 RSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRV-------------------------------------- 198 (291)
Q Consensus 157 ~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~-------------------------------------- 198 (291)
... .....|.|..+...|.|.|+|.|.|..|.......+.+
T Consensus 152 ~~~-~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~P~~~~~~~~~~~~~~l~w~~p~~~~g~pi~~y 230 (389)
T 2jll_A 152 YST-GRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALADVPSSPYGVKIIELSQTTAKVSFNKPDSHGGVPIHHY 230 (389)
T ss_dssp EEC-SSCEEEEECCCSTTSSEEEEEEEEETTEEEEEEEEEEECCCCCCCEEEEEEEECSSCEEEEEECCSCCTTSCEEEE
T ss_pred ecc-CCEEEEEECCCChhhCEEEEEEEEcCCCcEEEEEEEEecCCCCCCcceEEeeccCCEEEEEEeCCCCCCCcceEEE
Confidence 322 23568999999999999999999998775433322220
Q ss_pred ---------------e--ccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCCCCCC-CCccc--ccCCceEE
Q psy14540 199 ---------------N--EYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGP-FTFGE--LMEGVRTQ 258 (291)
Q Consensus 199 ---------------~--~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p~~~~-~~~~~--~~~g~~v~ 258 (291)
. .....+.|.++.+.+.|.|+|.|.|..|....+..+.+...+...+ .+... ...+..+.
T Consensus 231 ~v~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~A~N~~G~~~~s~~~~~~t~~~~~p~~p~~~~~~~~~~~v~ 310 (389)
T 2jll_A 231 QVDVKEVASEIWKIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQTLPVREPSPPSIHGQPSSGKSFK 310 (389)
T ss_dssp EEEEEETTCSCCEEEECSTTCSEEEECSCCTTCEEEEEEEEEESSCBCCCCCCEEEECCCCCCCCCCCEEEEEETTTEEE
T ss_pred EEEEEECCCcccEEeeccCCcceEEECCccCCCEEEEEEEEEcCCccCCCCcceEEEecCCCCCCCCccccccCcCCEEE
Confidence 0 0125688889999999999999999987654444444433221111 11111 34667888
Q ss_pred EEEEe
Q psy14540 259 VACVV 263 (291)
Q Consensus 259 l~C~~ 263 (291)
|.+..
T Consensus 311 l~W~~ 315 (389)
T 2jll_A 311 LSITK 315 (389)
T ss_dssp EEECC
T ss_pred EEEEC
Confidence 88864
No 35
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*
Probab=99.97 E-value=3.3e-29 Score=192.94 Aligned_cols=220 Identities=18% Similarity=0.305 Sum_probs=157.5
Q ss_pred CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEE
Q psy14540 2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTA 81 (291)
Q Consensus 2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~ 81 (291)
+|.|...+....+.+|+.++|.|.+.+ .+.|++++.... .. ........|.|.+++..|+|.|+|.+
T Consensus 4 ~p~i~~~~~~~~v~~G~~v~L~C~~~~----~v~W~~~~~~~~--~~-------~~~~~~~~L~i~~~~~~d~G~Y~C~~ 70 (289)
T 3ejj_X 4 APVIEPSGPELVVEPGETVTLRCVSNG----SVEWDGPISPYW--TL-------DPESPGSTLTTRNATFKNTGTYRCTE 70 (289)
T ss_dssp CCEEESCSSEEEECTTCCEEEEEECSS----CCEEECSCSSSS--EE-------CCCSSCCEEEESSCCGGGCEEEEEEC
T ss_pred CcEecCCCceEEECCCCCEEEEEEeCC----cEEEccCCCceE--EE-------eccCCccEEEEeeeccccCEEEEEEE
Confidence 677777888889999999999999876 499998764322 00 11122256999999999999999999
Q ss_pred eCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCc-eeEEeE-CCEeccCCCceEEecc
Q psy14540 82 TNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPL-TISWLK-NGLPILSDAEITIRSS 159 (291)
Q Consensus 82 ~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~-~~~~~~~~~~~~~~~~ 159 (291)
.+..+.....+.|.|..++.. ....+....+.+|+.+.|.|.+ .+.+.+ .+.|++ ++..+....+.....
T Consensus 71 ~~~~~~~~~~~~l~V~~~~~~------~~~~~~~~~v~~g~~v~L~C~~-~~~~~~~~v~W~~~~~~~~~~~~~~~~~~- 142 (289)
T 3ejj_X 71 LEDPMAGSTTIHLYVKDPAHS------WNLLAQEVTVVEGQEAVLPCLI-TDPALKDSVSLMREGGRQVLRKTVYFFSP- 142 (289)
T ss_dssp CC-----CEEEEEEECCSSCS------EEESCSEEEEETTSCEEECEEE-SCGGGGGSEEEEEGGGEECCTTCCEEEET-
T ss_pred eccCCcceeEEEEEEeCCCcc------eecccceEEEecCCceEeEEEc-cCCCcceEEEEEecCCeecCCCccEEECC-
Confidence 887777788888888765422 1233356788899999999999 465555 499987 565554433322211
Q ss_pred CCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEee-eCCccCCceeEEEEe
Q psy14540 160 GEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVAS-NTVASDNHSSNLRVN 238 (291)
Q Consensus 160 ~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~-~~~~~~~~~~~l~v~ 238 (291)
...|.|.++..+|+|.|+|.+. +..+..+..+.|.|.
T Consensus 143 ------------------------------------------~~~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~~l~V~ 180 (289)
T 3ejj_X 143 ------------------------------------------WRGFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVN 180 (289)
T ss_dssp ------------------------------------------TTEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred ------------------------------------------CCCEEEeecccccCEEEEEEEEeCCCccccccEEEEEE
Confidence 2347777788888888888888 444666777888887
Q ss_pred ----cCCCCCCCCccc-ccCCceEEEEEEeecCCCCceEEEEECCEEccCC
Q psy14540 239 ----VPPHIGPFTFGE-LMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQP 284 (291)
Q Consensus 239 ----~~p~~~~~~~~~-~~~g~~v~l~C~~~~~~p~~~v~W~~~~~~l~~~ 284 (291)
.+|.+...+... +.+|+.++|.|.+.++.|.+.+.|+++|..+...
T Consensus 181 ~~~~~~p~i~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~ 231 (289)
T 3ejj_X 181 RVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIP 231 (289)
T ss_dssp SSCCCCCEEEEESSSEECCSSSCEEEEEEEEESSSCCEEEEEETTEECCCC
T ss_pred ECCCCCCeEEecCCceEEEeCCcEEEEEEeCCCCCceEEEEEECCEEeecc
Confidence 456665555544 6799999999999444889999999999988654
No 36
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}
Probab=99.97 E-value=1.8e-29 Score=194.54 Aligned_cols=209 Identities=18% Similarity=0.254 Sum_probs=155.0
Q ss_pred CCCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEE
Q psy14540 1 SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCT 80 (291)
Q Consensus 1 s~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~ 80 (291)
.||.|...+....+.+|++++|.|.+.+ .+.|++++..+. . ....+ ..|.|.+++..|+|.|+|.
T Consensus 11 ~~P~i~~~~~~~~v~~G~~v~l~C~~~~----~i~W~~~~~~~~---~-----~~~~~---~~L~i~~~~~~d~G~Y~C~ 75 (290)
T 2o26_X 11 SPPSIHPAQSELIVEAGDTLSLTCIDPD----FVRWTFKTYFNE---M-----VENKK---NEWIQEKAEATRTGTYTCS 75 (290)
T ss_dssp -CCEESSCSSEEEEETTSCEEEEEECTT----EEEEEEECSSSC---E-----EEECS---SEEEETTCCGGGCEEEEEE
T ss_pred CCCEEeCCCCeEEEcCCCcEEEEECCCC----cEEEecCCccee---e-----ecCCC---ceEEEeccCHHhCeEEEEE
Confidence 3688888888889999999999999986 899999988661 0 01111 5699999999999999999
Q ss_pred EeCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCC-ceeEEe-ECCEeccCCCceEEec
Q psy14540 81 ATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPP-LTISWL-KNGLPILSDAEITIRS 158 (291)
Q Consensus 81 ~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~-~~~~W~-~~~~~~~~~~~~~~~~ 158 (291)
+.+ +. ...+.|.|..++... .......+.+|+.+.|.|.+ .+ |. +.+.|+ ++|..+....+.....
T Consensus 76 ~~n--g~-~~~~~l~V~~~~~~~-------~~~~~~~~~~g~~v~l~C~~-~~-p~~~~v~W~~~~g~~l~~~~~~~~~~ 143 (290)
T 2o26_X 76 NSN--GL-TSSIYVFVRDPAKLF-------LVGLPLFGKEDSDALVRCPL-TD-PQVSQYSLIECDGKSLPTDLTFVPNP 143 (290)
T ss_dssp ESS--SC-EEEEEEEEECSSCCB-------CCCCCEEEETTSCEEECCCB-SC-CSCEEEEEEETTSCCCCTTCEEEEET
T ss_pred eeC--Cc-cEEEEEEEeCCCccc-------ccccceEEecCCeEEEeCcC-CC-CCCceEEEEeCCCcCCCCCCceeeCC
Confidence 998 43 677788887654221 23345677899999999999 45 76 999995 5776664433222111
Q ss_pred cCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCe-eEEEEeeeCCcc-CCceeEEE
Q psy14540 159 SGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSG-NYTCVASNTVAS-DNHSSNLR 236 (291)
Q Consensus 159 ~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g-~y~C~~~~~~~~-~~~~~~l~ 236 (291)
...|.|.++..+|+| .|+|.|.|..+. .+..+.|.
T Consensus 144 -------------------------------------------~~~L~i~~v~~~d~G~~Y~C~a~n~~~~~~s~~~~l~ 180 (290)
T 2o26_X 144 -------------------------------------------KAGITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLK 180 (290)
T ss_dssp -------------------------------------------TTEEEEESCCGGGTTCEEEEEEEETTEEEECCCEEEE
T ss_pred -------------------------------------------CCCEEEecccHHHCCCEEEEEEEECCceEEeEEEEEE
Confidence 225677777888888 888888887544 34456777
Q ss_pred Ee----cCCCCCCCCccc-ccCCceEEEEEEeecCCCCce-EEEEECCEE
Q psy14540 237 VN----VPPHIGPFTFGE-LMEGVRTQVACVVQSGDLPLS-LQWYKNGLA 280 (291)
Q Consensus 237 v~----~~p~~~~~~~~~-~~~g~~v~l~C~~~~~~p~~~-v~W~~~~~~ 280 (291)
|. .+|.+...+... +.+|+.++|.|.+ .+.|.|. +.|+++|..
T Consensus 181 V~~~~~~~P~i~~~~~~~~v~~G~~v~l~C~~-~g~p~p~~i~W~~~~~~ 229 (290)
T 2o26_X 181 VREAIKAIPVVSVPETSHLLKKGDTFTVVCTI-KDVSTSVNSMWLKMNPQ 229 (290)
T ss_dssp EECCCCSCCEEECSCSBCCCCTTCCEEEEEEE-EESSTTCEEEEEEESSS
T ss_pred EEeCCCCCCccccCCCcceEecCCcEEEEEEE-ecCCcceeEEEecCCCC
Confidence 76 567665554444 8999999999999 6888886 999999877
No 37
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}
Probab=99.97 E-value=1.7e-30 Score=204.62 Aligned_cols=227 Identities=22% Similarity=0.291 Sum_probs=165.0
Q ss_pred CCcceeecceeeeecCCcEEEEEEec-------CCCCCeeEEEECCeecC--CC-eeEeceEEeeccceEEEEEEeecCC
Q psy14540 2 HPQLIYKFIQQTLQPGPPVSLKCIAT-------GNPTPHISWKLDGYPLA--GD-RFVMGQYMSLHGDVISHVNISSVRV 71 (291)
Q Consensus 2 ~p~~~~~~~~~~v~~g~~v~l~C~~~-------~~~~~~v~W~~~~~~~~--~~-~~~~~~~~~~~~~~~~~l~i~~~~~ 71 (291)
.|.|...|....+.+|+.+.|.|.+. +.|.+.+.|++++..+. .. .... ... + ..|.|.+++.
T Consensus 18 ~p~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~---~~~-~---~~L~i~~v~~ 90 (339)
T 3o4o_C 18 CRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRM---WAQ-D---GALWLLPALQ 90 (339)
T ss_dssp CEEEEECSCCEEEETTBCCEEECTTSCSSCCSTTSSCCBCCCEESSCCSCCSCCSSSCE---EEE-T---TEEEESSBCT
T ss_pred hHhhCcCceEEEEECCccEEEEeccccccccccCCCCceEEEEECCCCcccCccccccE---Eee-C---CeEEECCCCc
Confidence 57888999999999999999999997 78888999999988743 21 1111 111 1 3599999999
Q ss_pred CCCeEEEEEEeCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEe----eCCCCCceeEEeECCEe
Q psy14540 72 EDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLV----TKGDPPLTISWLKNGLP 147 (291)
Q Consensus 72 ~d~G~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~----~~~~p~~~~~W~~~~~~ 147 (291)
.|+|.|+|.+.+..+.....+.|.|...+..... .......+.+|+.+.|.|.+ ..+.|.+.+.|++++..
T Consensus 91 ~D~G~Y~C~~~n~~g~~~~~~~l~V~~~~~~~~~-----~~~~~~~~~~g~~v~l~C~~~~~~~~g~p~~~v~W~k~g~~ 165 (339)
T 3o4o_C 91 EDSGTYVCTTRNASYCDKMSIELRVFENTDAFLP-----FISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLL 165 (339)
T ss_dssp TCCEEEECCEEETTEEEEEEEEEEEECSCGGGHH-----HHCEEEEEETTSCEEEECCSCTTTCCSSSCCCBCCEESSCB
T ss_pred ccCEEEEEEEECCcceEEEEEEEEEEcCCCcccc-----ccccceEEECCCCEEEEecCCcccccCCCCceEEEecCCee
Confidence 9999999999988887888888888876522100 11122467899999999993 26888999999999988
Q ss_pred ccCCCc-eEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCC
Q psy14540 148 ILSDAE-ITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTV 226 (291)
Q Consensus 148 ~~~~~~-~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~ 226 (291)
+..... .... .....|.|.++..+|+|.|+|.|.|..
T Consensus 166 ~~~~~~~~~~~------------------------------------------~~~~~L~i~~v~~~d~G~Y~C~a~n~~ 203 (339)
T 3o4o_C 166 LDKDNEKFLSV------------------------------------------RGTTHLLVHDVALEDAGYYRCVLTFAH 203 (339)
T ss_dssp CCTTCSSEEEC------------------------------------------TTSSEEEESSCCGGGCEEEEEEEECCB
T ss_pred CCCCCceeEEc------------------------------------------CCcceEEEcccCHhhCeEEEEEEEECC
Confidence 754421 1111 012357777777788888888888766
Q ss_pred cc----CCceeEEEEec-----CCCCCCCCccc-ccCCceEEEEEEee--cCCC-CceEEEEECCEEcc
Q psy14540 227 AS----DNHSSNLRVNV-----PPHIGPFTFGE-LMEGVRTQVACVVQ--SGDL-PLSLQWYKNGLAIS 282 (291)
Q Consensus 227 ~~----~~~~~~l~v~~-----~p~~~~~~~~~-~~~g~~v~l~C~~~--~~~p-~~~v~W~~~~~~l~ 282 (291)
+. .+..+.|.|.. +|.+...+... +.+|+.++|.|.+. .|.| ++.+.|++||..+.
T Consensus 204 g~~~~~~~~~~~l~V~~~~~~~~P~i~~~~~~~~v~~G~~v~L~C~~~~~~g~P~~~~v~W~~~g~~~~ 272 (339)
T 3o4o_C 204 EGQQYNITRSIELRIKKKKEETIPVIISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIE 272 (339)
T ss_dssp TTBCCEEEEEEEEEEECCCCCCCCEECCCSCCCCCCCCSCCCCCCCEEESSSCCSSCEEEEESSSSCSS
T ss_pred CCeEEEEEEEEEEEEEcCCCCCCCEEecCCceeEeccCCCEEEEEEEECCCCCCCCceEEEEECCeecc
Confidence 52 34566677763 44555444433 89999999999984 4666 88999999998764
No 38
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}
Probab=99.97 E-value=8.5e-30 Score=210.65 Aligned_cols=213 Identities=20% Similarity=0.243 Sum_probs=150.1
Q ss_pred ecceeeeecCCcEEEEEEec-CCCCCeeEEEECCeecCCC-eeEeceEEeec-cceEEEEEEeecCCCCCeEEEEEEeCC
Q psy14540 8 KFIQQTLQPGPPVSLKCIAT-GNPTPHISWKLDGYPLAGD-RFVMGQYMSLH-GDVISHVNISSVRVEDSGIYQCTATNR 84 (291)
Q Consensus 8 ~~~~~~v~~g~~v~l~C~~~-~~~~~~v~W~~~~~~~~~~-~~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~y~C~~~~~ 84 (291)
.|....+.+|+.+.|.|.+. +.|.+.+.|++++..+... ........... .....+|.|.+++.+|+|.|+|.+.+.
T Consensus 233 ~p~~~~v~~G~~v~L~C~~~~g~p~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~N~ 312 (527)
T 3qs9_E 233 TLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH 312 (527)
T ss_dssp SCCEEEECTTSCEEEEEEEEESSSCCCEEEECSSSCCCGGGEEEEEEEETTTEEEEEEEEEESSCCGGGCEEEEEEETTE
T ss_pred CCCceEEeCCCeEEEEEEEccCCCCeEEEEEECCEECCCCceeeeeeeccCcceeeEEEEEEccCCcccCeEEEEEEEeC
Confidence 45677899999999999997 7899999999999877632 22211111000 122356999999999999999999876
Q ss_pred CCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceE
Q psy14540 85 VGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTS 164 (291)
Q Consensus 85 ~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~ 164 (291)
....+.|.|...+. ...........+.+|+.+.|.|.+ .+.|.|.+.|+++|..+....+...
T Consensus 313 ---~~~~~~L~V~~~p~-----i~~~~~~~~~~v~~G~~v~L~C~~-~g~P~p~i~W~k~g~~l~~~~~~~~-------- 375 (527)
T 3qs9_E 313 ---PSQSALVTIVEKGF-----INATNSSEDYEIDQYEEFCFSVRF-KAYPQIRCTWTFSRKSFPCEQKGLD-------- 375 (527)
T ss_dssp ---EEEEEEEEEC--CE-----EECCCSCCEECCCTTCCCCEEEEE-EEESCCEEEEEETTEEEECBCCBCS--------
T ss_pred ---CCceEEEEEEccCc-----cccccCcccEEEcCCCeEEEEEEE-EecCCCEEEEEECCEECcCCccccc--------
Confidence 66677788876541 111112234677899999999999 6899999999999988754322100
Q ss_pred EEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCCCCC
Q psy14540 165 SLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIG 244 (291)
Q Consensus 165 ~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p~~~ 244 (291)
....|.|.++..+|+|.|+|.|.|..+.....+.|.|..+|.+.
T Consensus 376 ------------------------------------~~~~L~I~~v~~~D~G~YtC~A~N~~g~~~~~~~L~V~~~P~i~ 419 (527)
T 3qs9_E 376 ------------------------------------NGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRRKPQVL 419 (527)
T ss_dssp ------------------------------------SSSEEEEECCCTTCCSCEEEEEEETTEEEEEEEEEC--CCCEEE
T ss_pred ------------------------------------CCcEEEEecCCcccCEEEEEEEEeCCCcEEEEEEEEEecCCeEE
Confidence 12357777888888888889999888888888889998888775
Q ss_pred CCCcccccCCceEEEEEEeecCCCCceEEEEECCEEc
Q psy14540 245 PFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAI 281 (291)
Q Consensus 245 ~~~~~~~~~g~~v~l~C~~~~~~p~~~v~W~~~~~~l 281 (291)
... .| ..|.|.+ .|.|.|.|.|++++...
T Consensus 420 ~~~-----~~--~~l~C~a-~g~P~p~i~W~~~~~~~ 448 (527)
T 3qs9_E 420 AEA-----SA--SQASCFS-DGYPLPSWTWKKCSDKS 448 (527)
T ss_dssp ECC-----CC--E---EEE-ECSSCCEEEEECCC---
T ss_pred EeC-----CC--CEEEEEE-EEEcCCeEEEEECCCCc
Confidence 543 22 3579999 89999999999886543
No 39
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Probab=99.97 E-value=6.4e-29 Score=192.78 Aligned_cols=222 Identities=19% Similarity=0.301 Sum_probs=170.4
Q ss_pred CCCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCC--eeEeceEEeeccceEEEEEEeecCCCCCeEEE
Q psy14540 1 SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGD--RFVMGQYMSLHGDVISHVNISSVRVEDSGIYQ 78 (291)
Q Consensus 1 s~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~ 78 (291)
.||.|...|....+.+|++++|.|.+.+.|.+.+.|++++..+... ++.. .....+.+.|.|.+++.+|+|.|+
T Consensus 3 ~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~----~~~~~~~~~L~i~~v~~~d~G~Y~ 78 (305)
T 2nzi_A 3 MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRI----QEFKGGYHQLIIASVTDDDATVYQ 78 (305)
T ss_dssp CCCEEEECCCCEEECTTCCEEEEEEEECSSCCEEEEEETTEECCCCSSSEEE----EEETTTEEEEEESSCCGGGCSEEE
T ss_pred CCCeeeecccceEEeCCCcEEEEEEEeCCCCCeEEEEECCEEcccCCCeEEE----EECCCCEEEEEEccCChhhCeEEE
Confidence 4899999999999999999999999998888999999999987632 2222 112334567999999999999999
Q ss_pred EEEeCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEec
Q psy14540 79 CTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRS 158 (291)
Q Consensus 79 C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~ 158 (291)
|.+.+..+.....+.|.|...+..... ..........+.+|+.+.|.|.+ .+.|.+.+.|++++..+....+.....
T Consensus 79 C~a~n~~g~~~~~~~l~V~~~p~~~~~--~~~~~~~~~~~~~g~~~~l~C~~-~g~p~p~i~W~~~~~~~~~~~~~~~~~ 155 (305)
T 2nzi_A 79 VRATNQGGSVSGTASLEVEVPAKIHLP--KTLEGMGAVHALRGEVVSIKIPF-SGKPDPVITWQKGQDLIDNNGHYQVIV 155 (305)
T ss_dssp EEEEETTEEEEEEEEEEECEEEEECCC--HHHHSSCCEEEETTCCEEEEEEE-EEESCCEEEEEESSSBCCSSSSCEEEE
T ss_pred EEEEcCCCCccceEEEEEecCCccCCC--ccccccccEEecCCCEEEEEEEE-CCCCCCEEEEEECCEECCCCCcEEEEE
Confidence 999988888778888888654421100 01122344677899999999999 688999999999999887766655543
Q ss_pred cCCceEEEEEee-CCCCCceeEEEEEEecCCCCCCceEEEEec-------------------------------------
Q psy14540 159 SGEYTSSLSIAT-LSTGHSGNYTCVASNTVASDNHSSNLRVNE------------------------------------- 200 (291)
Q Consensus 159 ~~~~~~~l~i~~-~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~------------------------------------- 200 (291)
.. ....|.+.. +...|.|.|+|.+.|..|.......+.+..
T Consensus 156 ~~-~~~~l~i~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~p~~~~~~~~~~~~v~l~w~~p~~~g~~~i~~y~ 234 (305)
T 2nzi_A 156 TR-SFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVADVPDPPRGVKVSDVSRDSVNLTWTEPASDGGSKITNYI 234 (305)
T ss_dssp CS-SEEEEEETTCCCSTTCEEEEEEEEETTEEEEEEEEEEEEBCCCCCEEEEEESCCSSCEEEEEECCSCCSBSCEEEEE
T ss_pred cC-CceEEEEecCCccCccEEEEEEEEeCCCceeeEEEEEEecCCCCCCCceeeeccCCEEEEEEcCCccCCCCceeEEE
Confidence 32 356788988 999999999999999887655444443110
Q ss_pred -----------------cceEEEEeeeecCCCeeEEEEeeeCCccCC
Q psy14540 201 -----------------YTSSLSIATLSTGHSGNYTCVASNTVASDN 230 (291)
Q Consensus 201 -----------------~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~ 230 (291)
....+.|.++...+.|.|+|.|.|..|...
T Consensus 235 v~~~~~~~~~w~~~~~~~~~~~~i~~l~~~~~y~~~~~A~N~~G~~~ 281 (305)
T 2nzi_A 235 VEKCATTAERWLRVGQARETRYTVINLFGKTSYQFRVIAENKFGLSK 281 (305)
T ss_dssp EEEEETTSCCEEEEEEESSSEEEECSCCSSCEEEEEEEEEETTEECC
T ss_pred EEEecCCCCccEECccccCceEEecCCCCCCeEEEEEEEEeCCcccC
Confidence 045678889999999999999999986544
No 40
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.97 E-value=3.5e-31 Score=208.14 Aligned_cols=224 Identities=26% Similarity=0.410 Sum_probs=95.5
Q ss_pred ecceeeeecCCcEEEEEEecCC-CCCeeEEEECCeecCC-CeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCC
Q psy14540 8 KFIQQTLQPGPPVSLKCIATGN-PTPHISWKLDGYPLAG-DRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRV 85 (291)
Q Consensus 8 ~~~~~~v~~g~~v~l~C~~~~~-~~~~v~W~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~ 85 (291)
.+....+.+|+.+.|.|.+.+. |.+.+.|++++..+.. .++.. ....|.|.+++.+|+|.|+|.+.+.
T Consensus 14 ~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~---------~~~~L~i~~v~~~D~G~Y~C~a~n~- 83 (334)
T 1ry7_B 14 QQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLV---------GPQRLQVLNASHEDSGAYSCRQRLT- 83 (334)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CcCcEEEecCCcEEEEeeCCCCCCCcceEEEECCeeCCCcccEEe---------ccceEEEeecccccCEEEEEEEEeC-
Confidence 4778889999999999999875 5789999999987762 22221 1246999999999999999999987
Q ss_pred CceeeeeeEEEEcCCCC-------------------CcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCE
Q psy14540 86 GSQTHSADMRVYDAPGQ-------------------PQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGL 146 (291)
Q Consensus 86 ~~~~~~~~l~v~~~~~~-------------------~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~ 146 (291)
+.....+.|.|...+.. |..............+.+|+.+.|.|.+ .+.|.+.+.|++++.
T Consensus 84 ~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~~~~~~~v~~g~~v~l~C~~-~g~p~~~v~W~~~~~ 162 (334)
T 1ry7_B 84 QRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPA-AGNPTPSISWLKNGR 162 (334)
T ss_dssp -----------------------------------CCCCSCCTTCCCCEEEEETTCCEEEECCC-CCSSCCEEECCBTTB
T ss_pred CeEEEEEEEEEeccCccccccccccccccccccCCCCEEeccccccceeEEecCCCcEEEEEEc-cCCCCCeEEEEECCE
Confidence 66666777777654321 1000000011233567899999999998 688999999999998
Q ss_pred eccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCC
Q psy14540 147 PILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTV 226 (291)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~ 226 (291)
.+....+..... .......|.|.++..+|+|.|+|.+.|..
T Consensus 163 ~~~~~~~~~~~~---------------------------------------~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~ 203 (334)
T 1ry7_B 163 EFRGEHRIGGIK---------------------------------------LRHQQWSLVMESVVPSDRGNYTCVVENKF 203 (334)
T ss_dssp CCCTTSSTTCCC---------------------------------------CCTTTTEEEECSCCGGGCCCEEEEEEETT
T ss_pred ECccccccccee---------------------------------------cccceEEEEECCCCcccCEEEEEEEEeCC
Confidence 775443210000 00113467888888888888999998888
Q ss_pred ccCCceeEEEEecC----CCCCCC--CcccccCCceEEEEEEeecCCCCceEEEEE----CCEEcc
Q psy14540 227 ASDNHSSNLRVNVP----PHIGPF--TFGELMEGVRTQVACVVQSGDLPLSLQWYK----NGLAIS 282 (291)
Q Consensus 227 ~~~~~~~~l~v~~~----p~~~~~--~~~~~~~g~~v~l~C~~~~~~p~~~v~W~~----~~~~l~ 282 (291)
+.....+.|.|... |.+... ....+.+|+.++|.|.+ .+.|.+.|.|++ ||..+.
T Consensus 204 g~~~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~G~~v~l~C~~-~g~p~p~v~W~~~~~~~g~~~~ 268 (334)
T 1ry7_B 204 GSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKV-YSDAQPHIQWLKHVEVNGSKVG 268 (334)
T ss_dssp EEEEEEEEEEEECCCCSSCBCCTTCSCCEEEESSCCEEECCCC-BCSSCEEEEEEECCCGGGCSBC
T ss_pred CCEEEEEEEEEecCCCCCCceEecCCCceEEeCCCCEEEEEEE-ecCCCCeEEEEECCcCCCcccc
Confidence 77777778888652 333322 22238899999999999 889999999999 777664
No 41
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*
Probab=99.97 E-value=1.9e-29 Score=199.45 Aligned_cols=225 Identities=16% Similarity=0.153 Sum_probs=144.3
Q ss_pred cceeeeecCCcEEEEEEecCCCC-----------CeeEEEECCeecCCC-eeE---eceEEeeccceEEEEEEeecCCCC
Q psy14540 9 FIQQTLQPGPPVSLKCIATGNPT-----------PHISWKLDGYPLAGD-RFV---MGQYMSLHGDVISHVNISSVRVED 73 (291)
Q Consensus 9 ~~~~~v~~g~~v~l~C~~~~~~~-----------~~v~W~~~~~~~~~~-~~~---~~~~~~~~~~~~~~l~i~~~~~~d 73 (291)
.....+.+|+.+.|.|.+.+.|. +.+.|++++...... ... ........+ ..|.|.+++.+|
T Consensus 14 ~~~v~v~~G~~v~L~C~~~~~p~~~~ys~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~---~~L~i~~~~~~D 90 (349)
T 4dep_C 14 MRQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEK---DVLWFRPTLLND 90 (349)
T ss_dssp CCCCEEETTSCEEEECTCCCCCSSSCHHHHHHTTCEEEEEEEESSCCCEEECCCCCGGGCEEEET---TEEEESSCCGGG
T ss_pred eeeEEEecCCeEEEEccccccccccccccccCCCceEEEEECCCCCcccccccccccCceEeecC---CEEEEccCChhh
Confidence 35567999999999999987554 899999987422100 000 000111111 359999999999
Q ss_pred CeEEEEEEeCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEe----eCCCCCceeEEeECCEecc
Q psy14540 74 SGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLV----TKGDPPLTISWLKNGLPIL 149 (291)
Q Consensus 74 ~G~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~----~~~~p~~~~~W~~~~~~~~ 149 (291)
+|.|+|.+.+..+.....+.|.|...+.... .....+....+.+|+.+.|.|.+ ..+.|.+.+.|++++..+.
T Consensus 91 ~G~Y~C~a~n~~~~~~~~~~l~V~~~~~~~~---~~~~~~~~~~~~~g~~~~l~C~~~~~~~~g~p~~~v~W~k~~~~l~ 167 (349)
T 4dep_C 91 TGNYTCMLRNTTYCSKVAFPLEVVQKDSCFN---SPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQ 167 (349)
T ss_dssp CEEEEEEEECSSCEEEEEEEEEEECCCTTSC---CSCCCCEEEEETTCSEEEEECCSCTTSSCTTSCCEEEEEETTEECC
T ss_pred CEEEEEEEecCCceEEEEEEEEEecCCcccC---cccccCcceeeecCccEEEEcCCCcccccCCCCceEEEeeCCEECC
Confidence 9999999999888888888888887553221 11122334577899999999974 1467899999999998875
Q ss_pred CCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCC-cc
Q psy14540 150 SDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTV-AS 228 (291)
Q Consensus 150 ~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~-~~ 228 (291)
........ ...|.|.++..+|+|.|+|.|.|.. +.
T Consensus 168 ~~~~~~~~--------------------------------------------~~~L~i~~v~~~d~G~Y~C~a~n~~~g~ 203 (349)
T 4dep_C 168 NFNNVIPE--------------------------------------------GMNLSFLIALISNNGNYTCVVTYPENGR 203 (349)
T ss_dssp SCSSEEEE--------------------------------------------TTEEEEESCCGGGCEEEEEEEEEEETTE
T ss_pred Cccceeec--------------------------------------------CCEEEEeeeeecCCcEEEEEEEEeeCCE
Confidence 43222111 2356677777777777777777765 33
Q ss_pred C---CceeEEEEec------CCCCCCCCcc---cccCCceEEEEEEeec---CCCCceEEEEECCEEccC
Q psy14540 229 D---NHSSNLRVNV------PPHIGPFTFG---ELMEGVRTQVACVVQS---GDLPLSLQWYKNGLAISQ 283 (291)
Q Consensus 229 ~---~~~~~l~v~~------~p~~~~~~~~---~~~~g~~v~l~C~~~~---~~p~~~v~W~~~~~~l~~ 283 (291)
. +..+.|.|.. +|.+...... .+.+|+.++|.|.+.. +.|.+.+.|++||..+..
T Consensus 204 ~~~~~~~~~l~v~~~~~~~~~p~i~~~~~~~~~~v~~G~~v~l~C~~~~~~~g~p~p~v~W~~~g~~l~~ 273 (349)
T 4dep_C 204 TFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDD 273 (349)
T ss_dssp EEEEEEEEEEEEECCGGGCCSCEEC----------------CCCEEEEECCCTTCCCEEEEESSCC----
T ss_pred EEEEEEEEEEEEEccCCCCCCCeEecCCCceeEEEecCCcEEEEEEEEEccCCCCCCEEEEEECCEEccc
Confidence 2 5666677765 4555544432 4789999999999933 578899999999998865
No 42
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R
Probab=99.97 E-value=5.6e-30 Score=199.63 Aligned_cols=221 Identities=21% Similarity=0.268 Sum_probs=152.0
Q ss_pred ecceeeeecCCcEEEEEEecCCC-CCeeEEEECCeecC-----CCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEE
Q psy14540 8 KFIQQTLQPGPPVSLKCIATGNP-TPHISWKLDGYPLA-----GDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTA 81 (291)
Q Consensus 8 ~~~~~~v~~g~~v~l~C~~~~~~-~~~v~W~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~ 81 (291)
......+.+|+.+.|.|.+.+.+ .+.+.|++++..+. ..++.. .+ ..|.|.+++.+|+|.|+|.+
T Consensus 11 ~~~~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~------~~---~~L~i~~v~~~D~G~Y~C~a 81 (315)
T 1itb_B 11 EKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQ------HK---EKLWFVPAKVEDSGHYYCVV 81 (315)
T ss_dssp CCCCCEEETTSCCCCBCCCCSCCCSSCCCEECTTSCSCSCCCTTSSSEE------CS---SBEECTTCCGGGCSCCEECC
T ss_pred CceEEEEcCCCcEEEEeeccCcCCCceEEEEeCCCcCccccccCCcEec------cC---CeEEECCCChhhCEEEEEEE
Confidence 34456899999999999998866 78999999986543 111111 11 25999999999999999999
Q ss_pred eCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEee-----CCCCCceeEEeECCEeccCCCceEE
Q psy14540 82 TNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVT-----KGDPPLTISWLKNGLPILSDAEITI 156 (291)
Q Consensus 82 ~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~-----~~~p~~~~~W~~~~~~~~~~~~~~~ 156 (291)
.+..+.....+.+.+...+... ...........+..|+.+.|.|.+. .+.|.+.+.|++++..+........
T Consensus 82 ~n~~g~~~~~~~v~v~~~~p~~---~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~g~p~~~i~W~k~~~~l~~~~~~~~ 158 (315)
T 1itb_B 82 RNSSYCLRIKISAKFVENEPNL---CYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFS 158 (315)
T ss_dssp CSSSCCCCEECCCEEECCCTTS---SSCGGGEEEEEEETTSCEEEECSSCTTTCTTTTCCCCCEEEETTEECCCCSSSEE
T ss_pred eCCceEEEEEEEEEEeCCCCCc---ccccccccceEEecCCCeEEEEecccccccCCCCCCEEEEEECCEECCCccceEe
Confidence 9887776666666665433111 0000111235678899999999873 6889999999999988854322111
Q ss_pred eccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEee-eCCccC---Cce
Q psy14540 157 RSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVAS-NTVASD---NHS 232 (291)
Q Consensus 157 ~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~-~~~~~~---~~~ 232 (291)
. ....|.|.++..+|+|.|+|.|. |..+.. ...
T Consensus 159 ~-------------------------------------------~~~~L~i~~v~~~d~G~Y~C~a~~n~~g~~~~~~~~ 195 (315)
T 1itb_B 159 G-------------------------------------------VKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRV 195 (315)
T ss_dssp E-------------------------------------------ETTEEEESSCCGGGCEEEEEEEEEEETTEEEEEEEE
T ss_pred e-------------------------------------------cCceEEEEeceehhCcEEEEEEEcCCCCcEEEEEEE
Confidence 1 02245666666666666666666 444433 333
Q ss_pred eEEEEe-----cCCCCCCCCcc--cccCCceEEEEEEeecCCCCceEEEEECCEEccCC
Q psy14540 233 SNLRVN-----VPPHIGPFTFG--ELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQP 284 (291)
Q Consensus 233 ~~l~v~-----~~p~~~~~~~~--~~~~g~~v~l~C~~~~~~p~~~v~W~~~~~~l~~~ 284 (291)
+.+.+. .+|.+...+.. .+.+|+.++|.|.+ .|.|.|.+.|++||..+...
T Consensus 196 ~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~v~l~C~~-~g~P~p~i~W~~~g~~i~~~ 253 (315)
T 1itb_B 196 IEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNV-TGQLSDIAYWKWNGSVIDED 253 (315)
T ss_dssp EEEEEECCCCCCCCEECSCCSEEEECCSSSCEEEEEEE-EECTTSEEEEEETTEECCTT
T ss_pred EEEEEecCCCCCCCEEecCCCCcEEEeCCCcEEEEEEE-ecCCCCeeEEEECCEECCcc
Confidence 334333 45666655543 38999999999999 88999999999999999764
No 43
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}
Probab=99.97 E-value=2.1e-29 Score=203.05 Aligned_cols=231 Identities=26% Similarity=0.402 Sum_probs=172.4
Q ss_pred CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEE
Q psy14540 2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTA 81 (291)
Q Consensus 2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~ 81 (291)
||.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+.......... .... ..|.|.+++.+|+|.|+|.+
T Consensus 121 p~~~~~~~~~~~~~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~--~~~~--~~L~i~~~~~~d~G~Y~C~~ 196 (403)
T 3laf_A 121 PLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVV--VLPS--GALQISRLQPGDSGVYRCSA 196 (403)
T ss_dssp CCEECSCCCCEEEETTSCEEECCCEECSSCCEEEEEESSSBCCCCTTCCSEE--ECTT--SCEEECSCCGGGCEEEEEEE
T ss_pred CCccccCCCcEEEEcCCeEEEEEEEcccCCCeEEEEECCEeccccCCceEEE--EcCC--ceEEEcccccccCEEEEEEE
Confidence 5667777778889999999999999888888999999998774111000000 1111 25899999999999999999
Q ss_pred eCCCCc-eeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccC
Q psy14540 82 TNRVGS-QTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSG 160 (291)
Q Consensus 82 ~~~~~~-~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~ 160 (291)
.+..+. ......+.|...+..+... .....+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+...........
T Consensus 197 ~n~~~~~~~~~~~l~v~~~p~~~~~~-~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~~~W~~~~~~~~~~~~~~~~~~- 273 (403)
T 3laf_A 197 RNPASTRTGNEAEVRILSDPGLHRQL-YFLQRPSNVIAIEGKDAVLECCV-SGYPPPSFTWLRGEEVIQLRSKKYSLLG- 273 (403)
T ss_dssp ECSSCCCBCCCEEEEEECCCCCCEEE-EEEECCCCEEEETTSCEEECCEE-EEESCCEEEEEETTEECCCSSSSEEEET-
T ss_pred EcCCCceeccceeEEEecCCCcccCc-eEecCCCceEecCCCcEEEEEEc-CCCCCCeEEEEECCeeccCCCceEEECC-
Confidence 987665 3456777887766443222 22234455678899999999999 5888899999999998865443222211
Q ss_pred CceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEe-----------------------------------------
Q psy14540 161 EYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVN----------------------------------------- 199 (291)
Q Consensus 161 ~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~----------------------------------------- 199 (291)
...|.|..+..+|.|.|+|.+.|..+.......+.+.
T Consensus 274 --~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~g~ 351 (403)
T 3laf_A 274 --GSNLLISNVTDDDSGTYTCVVTYKNENISASAELTVLVPPWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGD 351 (403)
T ss_dssp --TTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEEEEEECCCCEECCTTCCEEECCEEEEESCCEEEEEETTE
T ss_pred --ccEEEEeCCCHHHCEEEEEEEEcCCCceEEEEEEEEECCCcEeecCcceEEecCCeEEEEEEEeeccCCEEEEEECCE
Confidence 2469999999999999999999988766555444411
Q ss_pred ----------ccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCC
Q psy14540 200 ----------EYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPP 241 (291)
Q Consensus 200 ----------~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p 241 (291)
.....|.|..+..+|+|.|+|.|.|..|.....+.|.|..||
T Consensus 352 ~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~P~ 403 (403)
T 3laf_A 352 VVIPSDYFQIVGGSNLRILGVVKSDEGFYQCVAENEAGNAQSSAQLIVPKPA 403 (403)
T ss_dssp ECCCSSSEEEETTTEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEECCCC-
T ss_pred ECCCCCcEEEecCccEEEeccccccCEEEEEEEEcCCceEEEEEEEEEeCCC
Confidence 114679999999999999999999999999999999887765
No 44
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Probab=99.97 E-value=3.2e-28 Score=178.85 Aligned_cols=198 Identities=27% Similarity=0.446 Sum_probs=142.9
Q ss_pred CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeec-CCCCCeEEEEE
Q psy14540 2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSV-RVEDSGIYQCT 80 (291)
Q Consensus 2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~-~~~d~G~y~C~ 80 (291)
||.|...|....+.+|+.+.|.|.+.+.|.+.+.|++++..+........ .......+.|.|.++ +..|+|.|+|.
T Consensus 6 ~P~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~~~~~~~~~~~~~---~~~~~~~~~L~i~~v~~~~d~G~Y~C~ 82 (212)
T 2yd6_A 6 PPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVI---EFDDGSGSVLRIQPLRTPRDEAIYECV 82 (212)
T ss_dssp EEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCTTEEEE---EEGGGTEEEEEECSCCTTTTCEEEEEE
T ss_pred CCeEEeCcceeEEecCCeEEEEEEEeeCCCCEEEEEECCcCCCCCceeEE---EEcCCCceEEEEeccCCCCCCeEEEEE
Confidence 78999999999999999999999999888899999999998875433221 112233467999999 59999999999
Q ss_pred EeCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCC---ceEEe
Q psy14540 81 ATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDA---EITIR 157 (291)
Q Consensus 81 ~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~---~~~~~ 157 (291)
+.+..+.....+.|.|...+..+.........+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+.... +....
T Consensus 83 a~n~~g~~~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~-~g~p~p~v~W~~~g~~l~~~~~~~~~~~~ 161 (212)
T 2yd6_A 83 ASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAA-SGNPDPEITWFKDFLPVDTSNNNGRIKQL 161 (212)
T ss_dssp EEETTEEEEEEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEEEEEE-ECSSCCEEEEEETTEEC------CCEEEE
T ss_pred EEcCCCcEEEEEEEEEeccCccCCCcceeecCCcceeEecCCCEEEEEEe-cCCCCCeEEEEECCccccCcCCCceEEEE
Confidence 99888888888888888654332222233334455678899999999999 688999999999998875431 11100
Q ss_pred ccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCcc-CCceeEEE
Q psy14540 158 SSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVAS-DNHSSNLR 236 (291)
Q Consensus 158 ~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~-~~~~~~l~ 236 (291)
.......|.|.++..+|+|.|+|.|.|..|. .+....|.
T Consensus 162 ----------------------------------------~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~s~~a~l~ 201 (212)
T 2yd6_A 162 ----------------------------------------RSESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLY 201 (212)
T ss_dssp ----------------------------------------EETTEEEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEE
T ss_pred ----------------------------------------ecCCeEEEEEcCCCcccCEEEEEEEECCCCccccccccEE
Confidence 0011356777888888888888888888765 35566777
Q ss_pred EecCCCC
Q psy14540 237 VNVPPHI 243 (291)
Q Consensus 237 v~~~p~~ 243 (291)
|..++.+
T Consensus 202 ~~~~~~~ 208 (212)
T 2yd6_A 202 VRGTKHH 208 (212)
T ss_dssp EEC----
T ss_pred EEecccc
Confidence 7776654
No 45
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}
Probab=99.97 E-value=8.9e-29 Score=192.56 Aligned_cols=220 Identities=16% Similarity=0.248 Sum_probs=147.6
Q ss_pred cceeeeecCCcEEEEEEecC-CCCCeeEEEECCeecC-CCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCC
Q psy14540 9 FIQQTLQPGPPVSLKCIATG-NPTPHISWKLDGYPLA-GDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVG 86 (291)
Q Consensus 9 ~~~~~v~~g~~v~l~C~~~~-~~~~~v~W~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~ 86 (291)
+....+.+|+.+.|.|.... .|.+.+.|++++..+. ..++... .......|.|.+++.+|+|.|+|.+.+..|
T Consensus 8 ~~~~~v~eg~~v~l~~~~~~~~p~~~v~W~k~~~~i~~~~~~~~~-----~~~~~~~L~I~~~~~~D~G~Y~C~~~n~~g 82 (312)
T 2y23_A 8 EVVVNVDDDGVISLNFECDKMTPKSEFSWSKDYVSTEDSPRLEVE-----SKGNKTKMTFKDLGMDDLGIYSCDVTDTDG 82 (312)
T ss_dssp CCEEEECTTCCEEEEEECSSCCTTCCEEEEETTEECTTCTTEEEE-----EETTEEEEEESSCCGGGCEEEEEEESSSCC
T ss_pred ceeEEEecCCeEEEEEEEeCCCCCcEEEEEECCEECCCCCCEEEE-----EeCCEEEEEECcCCccCCEEEEEEEEeCCC
Confidence 34567889999999998864 7888999999999887 4443332 233446799999999999999999998776
Q ss_pred ceeeeeeEEEEc------------CCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCce
Q psy14540 87 SQTHSADMRVYD------------APGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEI 154 (291)
Q Consensus 87 ~~~~~~~l~v~~------------~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~ 154 (291)
... ...+.|.. .|..+ . .......+.+|+.+.|.|.+..+.|.+.+.|++++..+....+.
T Consensus 83 ~~~-s~~l~v~~~~~~~~~~~~~~~p~~~---~---~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~i~~~~~~ 155 (312)
T 2y23_A 83 IAS-SYLIDEEELKRLLALSHEHKFPTVP---V---KSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKY 155 (312)
T ss_dssp CCE-EEEECHHHHHHHHHHHHHHHSCBCC---E---EEEEEEEECSSSCEEEEEEESCCCSSCEEEEEETTEEECSSSSC
T ss_pred cEE-EEEEEEeeeeeeecccccCCCCccc---c---ccCCceEEeeCCCEEEEEEEEeCCCCCEEEEEECCEECeeCCcE
Confidence 433 44454432 22111 1 11125678899999999999448899999999999998776554
Q ss_pred EEeccC-CceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCcee
Q psy14540 155 TIRSSG-EYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSS 233 (291)
Q Consensus 155 ~~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~ 233 (291)
.+.... ..... |.|.++..+|+|.|+|.+.+..... ..
T Consensus 156 ~~~~~~~~~~~~---------------------------------------L~i~~~~~~d~G~Y~C~~~~~~~~~--~~ 194 (312)
T 2y23_A 156 KMHIDRNTGIIE---------------------------------------MFMEKLQDEDEGTYTFQLQDGKATN--HS 194 (312)
T ss_dssp EEEEETTTTEEE---------------------------------------EEESCCCGGGCEEEEEEEESSSCEE--EE
T ss_pred EEEEccCCCEEE---------------------------------------EEEccCCcccCEeEEEEEEeCCceE--EE
Confidence 433221 22233 4455555555555555554332211 11
Q ss_pred EEEE---------------------ecCCCCCCCCcccccCCceEEEEEEeecCCCCc-eEEEEECCEEcc
Q psy14540 234 NLRV---------------------NVPPHIGPFTFGELMEGVRTQVACVVQSGDLPL-SLQWYKNGLAIS 282 (291)
Q Consensus 234 ~l~v---------------------~~~p~~~~~~~~~~~~g~~v~l~C~~~~~~p~~-~v~W~~~~~~l~ 282 (291)
.+.+ ..+|.+.......+.+|+.+.|.|.+ .+.|++ .+.|+++|..+.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~v~~G~~~~l~C~~-~~~p~~~~v~W~~~g~~~~ 264 (312)
T 2y23_A 195 TVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVLLKCKV-ANIKKETHIVWYKDEREIS 264 (312)
T ss_dssp EEEECTHHHHHHHHHHHHHHHHHHHHHSSEEEEEEEEEEETTTEEEEEEEE-ESCCSSCEEEEEETTEEEE
T ss_pred EEEEcchhhhhhcccccccccchhhccCCceeecceEEEeCCCEEEEEEEE-cCCCCCCEEEEeeCCEECC
Confidence 1221 11243332223348899999999999 777777 999999999987
No 46
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A
Probab=99.96 E-value=7.4e-28 Score=176.92 Aligned_cols=146 Identities=27% Similarity=0.506 Sum_probs=116.7
Q ss_pred CCCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecC--CCeeEeceEEeeccceEEEEEEeecCC-CCCeEE
Q psy14540 1 SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLA--GDRFVMGQYMSLHGDVISHVNISSVRV-EDSGIY 77 (291)
Q Consensus 1 s~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~i~~~~~-~d~G~y 77 (291)
.||.|...|....+.+|+.++|.|.+.+.|.+.+.|++++..+. ..++... ....+.+.|.|.+++. .|+|.|
T Consensus 5 ~pP~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~----~~~~~~~~L~i~~v~~~~d~G~Y 80 (212)
T 2yd1_A 5 HPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVL----EQPGGISILRIEPVRAGRDDAPY 80 (212)
T ss_dssp CCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCTTSTTEEEE----EETTTEEEEEESSCCTTTTCSEE
T ss_pred CCCEEEcCCCceEEecCCEEEEEEEEccCCCCeEEEEECCEECCCCcceeEEE----EcCCCeEEEEEEecCCCCcCceE
Confidence 48999999999999999999999999988888999999999886 2333221 1233447899999999 999999
Q ss_pred EEEEeCCCCc-eeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCC
Q psy14540 78 QCTATNRVGS-QTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSD 151 (291)
Q Consensus 78 ~C~~~~~~~~-~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~ 151 (291)
+|.+.+..+. ....+.|.|...+..+.........+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+...
T Consensus 81 ~C~~~n~~g~~~~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~-~g~p~p~i~W~~~~~~~~~~ 154 (212)
T 2yd1_A 81 ECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKA-IGNPTPNIYWIKNQTKVDMS 154 (212)
T ss_dssp EEEEECSSSCEEEEEEEEEEECTTCSCTTCCEEEECCCCEEEETTCCEEECCEE-ECSSCCEEEEEETTEECCTT
T ss_pred EEEEEeCCCCeEEeeEEEEEecccCCCCCCCeeEeCCCceEeecCCeEEEEEEe-ccCCCCeEEEEECCeEcccC
Confidence 9999988887 7788889998765443222233344455778899999999999 68899999999999888653
No 47
>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2
Probab=99.96 E-value=3e-28 Score=198.64 Aligned_cols=269 Identities=17% Similarity=0.239 Sum_probs=169.3
Q ss_pred eeecceeeeecCCcEEEEEEecCCC--CCeeEEEECC--eecC------------------CCeeEeceEEeeccceEEE
Q psy14540 6 IYKFIQQTLQPGPPVSLKCIATGNP--TPHISWKLDG--YPLA------------------GDRFVMGQYMSLHGDVISH 63 (291)
Q Consensus 6 ~~~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~--~~~~------------------~~~~~~~~~~~~~~~~~~~ 63 (291)
+..|....+.+|++++|.|.+.+.+ .+.+.|+++. ..+. ..++... .......++
T Consensus 4 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~---~~~~~~~~~ 80 (444)
T 1igt_B 4 LQESGGGLVQPGGSLKLSCATSGFTFSDYYMYWVRQTPEKRLEWVAYISNGGGSTYYPDTVKGRFTIS---RDNAKNTLY 80 (444)
T ss_dssp EEEECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCGGGTTTEEEE---EETTTTEEE
T ss_pred EecCCCeEEcCCCCEEEEEEcCCCccCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEE---EeCCCCeEE
Confidence 4456778899999999999998753 5779999852 2210 0111111 011234578
Q ss_pred EEEeecCCCCCeEEEEEEeCCCCc---eeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCc-ee
Q psy14540 64 VNISSVRVEDSGIYQCTATNRVGS---QTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPL-TI 139 (291)
Q Consensus 64 l~i~~~~~~d~G~y~C~~~~~~~~---~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~ 139 (291)
|.|.+++.+|+|.|+|.+.+..+. ....+.|.|......++ ......+ ...+.+|+.++|.|.+.+..|.+ .+
T Consensus 81 L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P--~i~~~~~-~~~~~~g~~v~L~C~~~g~~P~p~~v 157 (444)
T 1igt_B 81 LQMSRLKSEDTAMYYCARHGGYYAMDYWGQGTTVTVSSAKTTAP--SVYPLAP-VCGDTTGSSVTLGCLVKGYFPEPVTL 157 (444)
T ss_dssp EEECSCCGGGCEEEEEEEECSSSCEEEEBCCEEEEECSCCCBCC--EEEEECC-CSSCCCSSCEEEEEEEEEEBSSCCEE
T ss_pred EEECCCCHHHCEEEEEEEecCCcccccccCcEEEEecCCCCCCC--ceeEecc-cccCCCCCcEEEEEEEcceeCCCcEE
Confidence 999999999999999999876543 22345677764221111 1111111 12347899999999995445776 99
Q ss_pred EEeECCEeccCCCceEEeccCCc--eEEEEEeeCCCCCceeEEEEEEecCCCCCC-------------------------
Q psy14540 140 SWLKNGLPILSDAEITIRSSGEY--TSSLSIATLSTGHSGNYTCVASNTVASDNH------------------------- 192 (291)
Q Consensus 140 ~W~~~~~~~~~~~~~~~~~~~~~--~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~------------------------- 192 (291)
.|++++..+...........+.+ ...|.|..+..+| |.|+|.|.|..+....
T Consensus 158 ~W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 236 (444)
T 1igt_B 158 TWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVDKKIEPRGPTIKPCPPCKCPAPNLL 236 (444)
T ss_dssp EEGGGTBCTTEEECCCEEETTEEEEEEEEEECSTTTTT-SCCEEEEEETTTTEEEEEECCCCCCSCCCCCCCSCCCSCCC
T ss_pred EEecCCCCCCeEecCccccCCcEEEEEEEEEchhhcCC-CeEEEEEEeCCCCcceEEEeccCCCCcccCCccccCCcccC
Confidence 99998876421110000011111 3468888888889 9999999998764200
Q ss_pred -ceE--EE----------------------E---ec------------------------------cceEEEEeeeecCC
Q psy14540 193 -SSN--LR----------------------V---NE------------------------------YTSSLSIATLSTGH 214 (291)
Q Consensus 193 -~~~--~~----------------------~---~~------------------------------~~~~l~i~~~~~~~ 214 (291)
... +. . .. ..+.|.|.++..+|
T Consensus 237 ~~p~v~~~~p~~~~~~~~G~~~~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d 316 (444)
T 1igt_B 237 GGPSVFIFPPKIKDVLMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWMS 316 (444)
T ss_dssp CCCEEEEECCCHHHHHCTTSCCEEEEEEEEECTTCCCCEEEEEETTEECSSTTCBCCEEECSSSEEEEEEEECCHHHHHT
T ss_pred CCceEEecCCchhheeecCCCcEEEEEEeecccCCCCeEEEEEECCccccCcccccceeCCCCcEEEEEEEEEcHHHhcc
Confidence 011 11 1 00 01257777778889
Q ss_pred CeeEEEEeeeCCccCCceeEE----EEecCCCCCCCCccc--ccCCceEEEEEEeecCCCCc-eEEEEECCEEcc
Q psy14540 215 SGNYTCVASNTVASDNHSSNL----RVNVPPHIGPFTFGE--LMEGVRTQVACVVQSGDLPL-SLQWYKNGLAIS 282 (291)
Q Consensus 215 ~g~y~C~~~~~~~~~~~~~~l----~v~~~p~~~~~~~~~--~~~g~~v~l~C~~~~~~p~~-~v~W~~~~~~l~ 282 (291)
+|.|+|.|.|..+.......+ .+..+|.+...+... +..| .++|.|.+.+.+|++ .|.|+|||.++.
T Consensus 317 ~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~~~-~~~L~C~~~g~~P~~~~v~W~k~g~~l~ 390 (444)
T 1igt_B 317 GKEFKCKVNNKDLPAPIERTISKPKGSVRAPQVYVLPPPEEEMTKK-QVTLTCMVTDFMPEDIYVEWTNNGKTEL 390 (444)
T ss_dssp TCEEEEEEECTTCSSCEEEEEECCCCCCBCCEEEEECCCGGGTTSS-EEEEEEEEEEEBSSCCEEEEEETTEECS
T ss_pred CCcEEEEEEcCCCCCceEEEEeccCCCCCCCEEEEeCCChHHccCC-eEEEEEEEEeeeCCCCEEEEEECCEEcc
Confidence 999999999988765333333 334567665443332 4455 599999994336665 999999999884
No 48
>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D
Probab=99.96 E-value=2.8e-28 Score=190.06 Aligned_cols=223 Identities=16% Similarity=0.165 Sum_probs=151.2
Q ss_pred CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEE
Q psy14540 2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTA 81 (291)
Q Consensus 2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~ 81 (291)
+|.|...|. ..+.+|++++|.|.+.+. .+.+.|+|+|..+..... .......|.|.+++.+|+|.|+|.+
T Consensus 24 ~P~i~~~p~-~~v~~G~~v~L~C~~~~~-~~~~~W~k~g~~~~~~~~--------~~~~~~~L~I~~v~~~D~G~Y~C~a 93 (316)
T 3vh8_G 24 KPFLSAWPS-AVVPRGGHVTLRCHYRHR-FNNFMLYKEDRIHIPIFH--------GRIFQESFNMSPVTTAHAGNYTCRG 93 (316)
T ss_dssp CCEEEEESC-SEEETTSCEEEEEEBTTB-CCSEEEEESSCSSSCHHH--------HCCBSSCEEECSCCGGGCEEEEEEE
T ss_pred CCEeeccCC-CccCCCCCEEEEEEccCC-CceEEEEeCCCccceeec--------CCcceEEEEECCCCcccCeEEEEEE
Confidence 788888887 578899999999999876 678999999986542110 0111245889999999999999998
Q ss_pred eCCC-----CceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEE
Q psy14540 82 TNRV-----GSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITI 156 (291)
Q Consensus 82 ~~~~-----~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~ 156 (291)
.+.. +..+..+.|.|...+..|. ....+. ..+.+|+.++|.|.+ . .+.+.+.|++++..+........
T Consensus 94 ~~~~~~~~~~~~s~~~~l~V~~~~~~p~----~~~~~~-~~v~~G~~v~L~C~~-~-~~~~~~~w~k~g~~~~~~~~~~~ 166 (316)
T 3vh8_G 94 SHPHSPTGWSAPSNPVVIMVTGNHRKPS----LLAHPG-PLVKSGERVILQCWS-D-IMFEHFFLHKEGISKDPSRLVGQ 166 (316)
T ss_dssp BCSSSSSSBCCCCCCEEEEEECSSCCCE----EEEESC-SEEETTCCEEEEEEE-S-SCCSEEEEEETTCCSCCEEEECE
T ss_pred EcCCCCcceecCCCcEEEEEecCCCCCe----EEecCC-CccCCCCeEEEEEcC-C-CCCcEEEEEECCCccccceeeee
Confidence 7532 2344556777765443221 111222 237899999999998 3 45678999999877643211100
Q ss_pred eccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCcc-----CCc
Q psy14540 157 RSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVAS-----DNH 231 (291)
Q Consensus 157 ~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~-----~~~ 231 (291)
..... ....|.|.++..+|+|.|+|.|.|..+. .+.
T Consensus 167 ~~~~~---------------------------------------~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~s~ 207 (316)
T 3vh8_G 167 IHDGV---------------------------------------SKANFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSD 207 (316)
T ss_dssp EETTE---------------------------------------EEEEEEECSCCGGGCEEEEEEEECTTCTTBCCCCCC
T ss_pred ecCCC---------------------------------------ceEEEEECCCChhhCceEEEEEecCCCCccccCCCC
Confidence 00000 1345667777777778888888776543 255
Q ss_pred eeEEEEec---CCCCCCCCcccccCCceEEEEEEeecCCCCceEEEEECCEEcc
Q psy14540 232 SSNLRVNV---PPHIGPFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAIS 282 (291)
Q Consensus 232 ~~~l~v~~---~p~~~~~~~~~~~~g~~v~l~C~~~~~~p~~~v~W~~~~~~l~ 282 (291)
.+.|.|.. +|.+...+...+.+|+.++|.|.+ . .|.+.+.|+|+|..+.
T Consensus 208 ~~~l~V~~~~~~p~i~~~~~~~v~~G~~v~L~C~~-~-~~~~~~~W~k~g~~~~ 259 (316)
T 3vh8_G 208 PLDIVVTGPYEKPSLSAQPGPKVQAGESVTLSCSS-R-SSYDMYHLSREGGAHE 259 (316)
T ss_dssp CEEEEEECSSCCCEEEEESCSCCCTTSCCEEEEEE-S-SCCSEEEEEETTSSCC
T ss_pred CEEEEecCCCCCCeEEeCCCCeecCCCcEEEEEEC-C-CCCcEEEEEECCCcCC
Confidence 66676653 344544444458899999999999 5 4678999999998765
No 49
>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A
Probab=99.96 E-value=2e-27 Score=195.23 Aligned_cols=274 Identities=17% Similarity=0.284 Sum_probs=173.2
Q ss_pred ceeecceeeeecCCcEEEEEEecCCC--CCeeEEEECC--eecC-------CCe-e-----EeceEEee--ccceEEEEE
Q psy14540 5 LIYKFIQQTLQPGPPVSLKCIATGNP--TPHISWKLDG--YPLA-------GDR-F-----VMGQYMSL--HGDVISHVN 65 (291)
Q Consensus 5 ~~~~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~--~~~~-------~~~-~-----~~~~~~~~--~~~~~~~l~ 65 (291)
.+..|..+.+.+|++++|.|.+.+.+ ...+.|++.. .... ... . ...+.... .....++|.
T Consensus 4 ~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~ 83 (475)
T 1iga_A 4 LLEQSGAEVKKPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMG 83 (475)
T ss_pred eeccCCcEEEeCCCCEEEEEEecCCCCCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEcCCCCeEEEE
Confidence 45567888999999999999998643 5679999853 2110 000 0 00111111 123457899
Q ss_pred EeecCCCCCeEEEEEEeCCCCc------eeeeeeEEEEcCC-CCCcccceeccCCcceeecCCCceEEEEEeeCCCCC-c
Q psy14540 66 ISSVRVEDSGIYQCTATNRVGS------QTHSADMRVYDAP-GQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPP-L 137 (291)
Q Consensus 66 i~~~~~~d~G~y~C~~~~~~~~------~~~~~~l~v~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~-~ 137 (291)
|.+++.+|+|.|.|.+.+..+. ....+.|.|.... ..| .... ..+ ..+.+|+.++|.|.+.+.+|. +
T Consensus 84 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P--~i~~-~~~--~~~~~g~~v~L~C~~~g~~P~~p 158 (475)
T 1iga_A 84 LSSLRPEDTAVYYCARDPYGGGKSEFDYWGQGTLVTVSSASPTSP--KVFP-LSL--CSTQPDGNVVIACLVQGFFPQEP 158 (475)
T ss_pred ECCCChhhCEEEEEEEeccCCCccceeeecCceEEEeccCCCcCC--eEEe-cCc--cccCCCCeEEEEEEEeeecCCCc
Confidence 9999999999999999876541 2344567776422 112 1111 111 123689999999999544466 4
Q ss_pred -eeEEeECCEeccCCCceEE--eccCCc--eEEEEEeeCCCCCceeEEEEEEecCCCC-CCce-----------------
Q psy14540 138 -TISWLKNGLPILSDAEITI--RSSGEY--TSSLSIATLSTGHSGNYTCVASNTVASD-NHSS----------------- 194 (291)
Q Consensus 138 -~~~W~~~~~~~~~~~~~~~--~~~~~~--~~~l~i~~~~~~d~g~y~C~~~~~~~~~-~~~~----------------- 194 (291)
.+.|++++........... ..++.. ...|.|..+..+|.|.|+|.|.|..+.. ...+
T Consensus 159 ~~v~W~~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~~v~l~V~~~~~~~~~~~~~ 238 (475)
T 1iga_A 159 LSVTWSESGQGVTARNFPPSQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNPSQDVTVPCPVPSTPPTPSPSTPP 238 (475)
T ss_pred eEEEEcCCCcccceEeCCceecCCCCcEEEEEEEEechhHcCCCceEEEEEEECCCCceeeeEecccccCcccccccccc
Confidence 9999998753221110001 111111 2357787888889999999999986531 0000
Q ss_pred ---------EE--E------------------Eec---------------------------------cceEEEEeeeec
Q psy14540 195 ---------NL--R------------------VNE---------------------------------YTSSLSIATLST 212 (291)
Q Consensus 195 ---------~~--~------------------~~~---------------------------------~~~~l~i~~~~~ 212 (291)
.+ . +.. ..+.|.|..+..
T Consensus 239 ~~~~~~~~p~v~~~~p~~~~~~~G~~v~L~C~~~g~~p~~~~~i~W~~~~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~ 318 (475)
T 1iga_A 239 TPSPSCCHPRLSLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTWTPSSGKSAVQGPPERDLCGCYSVSSVLPGCAEPW 318 (475)
T ss_pred cCCCCCCCcEEEEcCCChHHhccCCceEEEEEEEcccCCCceEEEECCCCcCCccccCceECCCCCEEEEEEEEEchHHh
Confidence 01 0 000 012477888888
Q ss_pred CCCeeEEEEeeeCCccCCceeEEEE---ecCCCCCCCCccc--ccCCceEEEEEEeecC-CCC-ceEEEEECCEEccCC
Q psy14540 213 GHSGNYTCVASNTVASDNHSSNLRV---NVPPHIGPFTFGE--LMEGVRTQVACVVQSG-DLP-LSLQWYKNGLAISQP 284 (291)
Q Consensus 213 ~~~g~y~C~~~~~~~~~~~~~~l~v---~~~p~~~~~~~~~--~~~g~~v~l~C~~~~~-~p~-~~v~W~~~~~~l~~~ 284 (291)
+|+|.|+|.|.|..+.......|.+ ..+|.+...+... +.+|+.+.|.|.+ .| +|+ +.|.|+|||.+|...
T Consensus 319 ~d~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~P~v~~~~~~~~~v~~g~~~~L~C~~-~g~~P~~~~v~W~k~g~~l~~~ 396 (475)
T 1iga_A 319 NHGKTFTCTAAYPESKTPLTATLSKSGNTFRPEVHLLPPPSEELALNELVTLTCLA-RGFSPKDVLVRWLQGSQELPRE 396 (475)
T ss_pred ccCCcEEEEEEcCCCCCceEEEeecCCCCCCCeEEEECCChHHhccCCceEEEEEE-eeeECCCCEEEEEECCEECCCC
Confidence 9999999999998877655445532 4567665544432 6789999999999 55 443 599999999998654
No 50
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A
Probab=99.96 E-value=2.6e-29 Score=197.26 Aligned_cols=234 Identities=16% Similarity=0.285 Sum_probs=159.6
Q ss_pred CcceeecceeeeecCCcEEEEEEecCC----CCCeeEEEECC--eecC----------------CCeeEeceEEeeccce
Q psy14540 3 PQLIYKFIQQTLQPGPPVSLKCIATGN----PTPHISWKLDG--YPLA----------------GDRFVMGQYMSLHGDV 60 (291)
Q Consensus 3 p~~~~~~~~~~v~~g~~v~l~C~~~~~----~~~~v~W~~~~--~~~~----------------~~~~~~~~~~~~~~~~ 60 (291)
+.++..+..+.+.+|++++|.|.+.+. +.+.+.|++++ .... ..++... .....
T Consensus 15 ~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~----~~~~~ 90 (331)
T 3u83_A 15 SQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVEFL----RPSFT 90 (331)
T ss_dssp ------CEEEEEETTCCEEECCBCSSCCSSCEEEEEEEEEEETTEEEEEEEEETTTEEEECTTCTTTEEES----SCSSS
T ss_pred cceEEcCCcEEEEecCCEEEeeecCCCCCCCceEEEEEEEcCCCCCceEEEEeccCCCCcCcccCCceEec----ccCCC
Confidence 455666777899999999999998875 44569999954 1110 1111111 11222
Q ss_pred EEEEEEeecCCCCCeEEEEEEe-CCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCC---CceEEEEEeeCCCCC
Q psy14540 61 ISHVNISSVRVEDSGIYQCTAT-NRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSG---DRAGVQCLVTKGDPP 136 (291)
Q Consensus 61 ~~~l~i~~~~~~d~G~y~C~~~-~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g---~~~~l~C~~~~~~p~ 136 (291)
..+|.|.+++.+|+|.|+|.+. +..+.....+.|.|...|.. ..........+.+| +.+.|.|.+..+.|.
T Consensus 91 ~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~-----~~~~~~~~~~~~~g~~~~~~~l~C~~~~~~p~ 165 (331)
T 3u83_A 91 DGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTN-----WIEGTQAVLRAKKGQDDKVLVATCTSANGKPP 165 (331)
T ss_dssp BCCEEECSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCEE-----EEEECSSCEEECTTCCCCEEEEEEEEEEEBSC
T ss_pred CceEEEcccCcccCcEEEEEEEecCCCccEEEEEEEEecCCcc-----eeecCCCceeecCCCccceEEEEEEecCCcCC
Confidence 3569999999999999999854 55566777888888875521 12223445667788 779999984478999
Q ss_pred ceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCe
Q psy14540 137 LTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSG 216 (291)
Q Consensus 137 ~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g 216 (291)
+.+.|++++...... ... ....|.+.- ...|.|..+..+|+|
T Consensus 166 ~~i~W~~~~~~~~~~--------------~~~----~~~~~~~~~--------------------~~~L~i~~~~~~d~G 207 (331)
T 3u83_A 166 SVVSWETRLKGEAEY--------------QEI----RNPNGTVTV--------------------ISRYRLVPSREAHQQ 207 (331)
T ss_dssp CEEEEEESSCCEEEE--------------EEE----ECTTSCEEE--------------------EEEEEECCCGGGTTC
T ss_pred ceEEEEcCCCCcccc--------------cee----ECCCCcEEE--------------------EEEEEEEeccccCCC
Confidence 999999963221100 000 011122211 246788888999999
Q ss_pred eEEEEeeeCCccCCceeEEEEecCCCCCCCCcc--cccCCceEEEEEEeecCCCCce-EEEEECCEEccCC
Q psy14540 217 NYTCVASNTVASDNHSSNLRVNVPPHIGPFTFG--ELMEGVRTQVACVVQSGDLPLS-LQWYKNGLAISQP 284 (291)
Q Consensus 217 ~y~C~~~~~~~~~~~~~~l~v~~~p~~~~~~~~--~~~~g~~v~l~C~~~~~~p~~~-v~W~~~~~~l~~~ 284 (291)
.|+|.|.|..+..+.++.|.|..+|.+...+.. .+.+|+.++|.|.+ .+.|.+. +.|+++|..+...
T Consensus 208 ~Y~C~a~n~~~~~~~~~~l~V~~~P~~~~~~~~~~~~~~g~~~~l~C~~-~g~p~p~~i~W~~~~~~~~~~ 277 (331)
T 3u83_A 208 SLACIVNYHMDRFKESLTLNVQYEPEVTIEGFDGNWYLQRMDVKLTCKA-DANPPATEYHWTTLNGSLPKG 277 (331)
T ss_dssp EEEEEEEETTEEEEEEEECCEEEEEEEEEECCCSCCBTTCCCEEEEEEE-EEESCCCEEEEEETTBSCCTT
T ss_pred EEEEEEecCCCcceeeEEEEEecCCeEEEecCCCceEeCCCeEEEEEeC-cCCCCCCEEEEEECCCccccc
Confidence 999999999888888888888887766543332 28899999999999 8888887 9999999887553
No 51
>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}
Probab=99.96 E-value=1.8e-29 Score=196.18 Aligned_cols=229 Identities=18% Similarity=0.263 Sum_probs=156.1
Q ss_pred ceeeeecCCcEEEEEEecC-CCCCeeEEEECCeecCCC------e--eEe------ceEEeeccceEEEEEEeecCCCCC
Q psy14540 10 IQQTLQPGPPVSLKCIATG-NPTPHISWKLDGYPLAGD------R--FVM------GQYMSLHGDVISHVNISSVRVEDS 74 (291)
Q Consensus 10 ~~~~v~~g~~v~l~C~~~~-~~~~~v~W~~~~~~~~~~------~--~~~------~~~~~~~~~~~~~l~i~~~~~~d~ 74 (291)
..+++.+|++++|.|.+.+ .+.+.+.|+|++...... . ... ...........++|.|.+++.+|+
T Consensus 7 p~vtv~~G~~v~L~C~v~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~ 86 (308)
T 4fom_A 7 PHVTAVWGKNVSLKCLIEVNETITQISWEKIHGKSSQTVAVHHPQYGFSVQGEYQGRVLFKNYSLNDATITLHNIGFSDS 86 (308)
T ss_dssp CSCEEETTSCEEECCBCCCSSCEEEEEEEEESSSCEEEEEEECSSSCEEECTTTTTTEEESCCSSSBCCEEECSCCGGGC
T ss_pred CEeEEEcCCcEEEEEEecCCCCCcEEEEEECCCCCCceEEEecCCCCceecCcccceEEeeccCCCceEEEEccCCHHHC
Confidence 3578899999999999865 445679999965322100 0 000 000011112235699999999999
Q ss_pred eEEEEEEeCC-CCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCc
Q psy14540 75 GIYQCTATNR-VGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAE 153 (291)
Q Consensus 75 G~y~C~~~~~-~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~ 153 (291)
|.|+|.+.+. .+.......+.+...+.. .....+.......|+.+.|.|.+..+.|.+.+.|++++..+.....
T Consensus 87 G~Y~C~a~n~~~~~~~~~~~~~v~~~~~~-----~~~~~~~~~~~~~~~~~~l~C~~~~g~P~~~i~W~~~~~~~~~~~~ 161 (308)
T 4fom_A 87 GKYICKAVTFPLGNAQSSTTVTVLVEPTV-----SLIKGPDSLIDGGNETVAAICIAATGKPVAHIDWEGDLGEMESTTT 161 (308)
T ss_dssp EEEEEEEEETTTEEEEEEEEEEEEBCCEE-----EEEECSSCCCTTCSCEEEEEEEEEEEBSCCEEEECCCSSBCCEEEE
T ss_pred EEEEEEEeeCCCcceeeeeEEEeeecccc-----ccccccceeEEcCCceEEEEEEecCCcCCceEEEEECCcccccccc
Confidence 9999999865 445666667777665421 1223334455667899999998767899999999999887653321
Q ss_pred eEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEE-----------------------------------
Q psy14540 154 ITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRV----------------------------------- 198 (291)
Q Consensus 154 ~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~----------------------------------- 198 (291)
............|.|..+..+|.|.|+|.|.|..+.......+.+
T Consensus 162 ~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~P~~~~~~~~~~~~~~g~~v~l~C~~~g~P~ 241 (308)
T 4fom_A 162 SFPNETATIISQYKLFPTRFARGRRITCVVKHPALEKDIRYSFILDIQYAPEVSVTGYDGNWFVGRKGVNLKCNADANPP 241 (308)
T ss_dssp ECTTSCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCCCEEEEECCBCCCSCEETTCCSCEEECCEEEESC
T ss_pred eeeeecccccccceEEeeeecCCccEEEEEEccCCCCceEEeEEEEEecCCeeEEcccceeeeeccccEEEEEEEecCCC
Confidence 111111112356899999999999999999998776544333220
Q ss_pred ------------------eccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCCCC
Q psy14540 199 ------------------NEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHI 243 (291)
Q Consensus 199 ------------------~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p~~ 243 (291)
......+.|.++..+|+|.|+|.|.|..|..+.++.|.|.++|.-
T Consensus 242 p~~v~W~k~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~A~N~~G~~~~~~~l~V~~~P~~ 304 (308)
T 4fom_A 242 PFKSVWSRLDGQWPDGLLASDNTLHFVHPLTFNYSGVYICKVTNSLGQRSDQKVIYISDPPHH 304 (308)
T ss_dssp EEEEECCBSSSCCCSSCBCSTTEEECCSCCCSCCCSEEEEEEEETTEEEEEEEECCEECCC--
T ss_pred CcEEEEEECCeECCCcEEEcCCeEEEECCCChhhCEEEEEEEEeCCCcEEEEEEEEEEcCCCC
Confidence 001344557788999999999999999999999999999998863
No 52
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A
Probab=99.96 E-value=3.7e-28 Score=176.03 Aligned_cols=186 Identities=25% Similarity=0.399 Sum_probs=137.0
Q ss_pred CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCC---eeEeceEEeeccceEEEEEEeecCCCCCeEEE
Q psy14540 2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGD---RFVMGQYMSLHGDVISHVNISSVRVEDSGIYQ 78 (291)
Q Consensus 2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~ 78 (291)
||.|...+....+.+|++++|.|.+.+.|.+.+.|++++..+... ++.. ......+.|.|.+++..|+|.|+
T Consensus 5 ~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~-----~~~~~~~~L~i~~~~~~d~G~Y~ 79 (194)
T 2a38_A 5 APTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQI-----SFSDGRAKLTIPAVTKANSGRYS 79 (194)
T ss_dssp EEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEESSSBCCTTTSTTCEE-----EEETTEEEEEESSCCGGGCEEEE
T ss_pred CCeEEccCCceEEECCCEEEEEEEEEecCCCEEEEEECCEEcccccCCceEE-----EeCCCEEEEEECCCCcccCEEEE
Confidence 788999999999999999999999988888899999999887632 2211 11233477999999999999999
Q ss_pred EEEeCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEec
Q psy14540 79 CTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRS 158 (291)
Q Consensus 79 C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~ 158 (291)
|.+.+..+.......+.|......| .....+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+....+.....
T Consensus 80 C~~~n~~~~~~~~~~l~v~~~~~~p----~~~~~~~~~~~~~g~~~~l~C~~-~g~p~~~v~W~~~~~~~~~~~~~~~~~ 154 (194)
T 2a38_A 80 LKATNGSGQATSTAELLVKAETAPP----NFVQRLQSMTVRQGSQVRLQVRV-TGIPTPVVKFYRDGAEIQSSLDFQISQ 154 (194)
T ss_dssp EEEEETTEEEEEEEEEEEECCCEEE----EEEECCCCEEECTTEEEEEEEEE-EEESCCEEEEEETTEECCCSSSEEEEE
T ss_pred EEEEcCCceEeEEEEEEEccCCCCC----EEEeCCccEEEcCCCEEEEEEEE-EEecCCeEEEEECCEECCCCCcEEEEE
Confidence 9999888777777788887543222 22233445678899999999999 688999999999999887655443322
Q ss_pred cCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEE
Q psy14540 159 SGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRV 237 (291)
Q Consensus 159 ~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v 237 (291)
.+. ...|.|.++..+|+|.|+|.|.|..|.....+.|.|
T Consensus 155 ~~~----------------------------------------~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 193 (194)
T 2a38_A 155 EGD----------------------------------------LYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLV 193 (194)
T ss_dssp ETT----------------------------------------EEEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred cCC----------------------------------------EEEEEECCCChhcCeEEEEEEEeCCCceEEEEEEEE
Confidence 211 224666666666777777777776666555555554
No 53
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}
Probab=99.96 E-value=1.7e-28 Score=192.32 Aligned_cols=211 Identities=18% Similarity=0.225 Sum_probs=146.3
Q ss_pred cceeeeecCCcEEEEEEecCC---------CCCeeEEEECCeecCC-CeeEeceEEeeccceEEEEEEeecCCCCCe-EE
Q psy14540 9 FIQQTLQPGPPVSLKCIATGN---------PTPHISWKLDGYPLAG-DRFVMGQYMSLHGDVISHVNISSVRVEDSG-IY 77 (291)
Q Consensus 9 ~~~~~v~~g~~v~l~C~~~~~---------~~~~v~W~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G-~y 77 (291)
.....+.+|+.+.|.|.+.+. |.+.+.|++++..+.. .+. .....|.|.+++.+|+| .|
T Consensus 36 ~~~v~v~eG~~v~L~C~~~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~~----------~~~~~L~i~~v~~~D~Gs~Y 105 (329)
T 3oq3_B 36 TMNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRR----------VKNGDLWIANYTSNDSHRRY 105 (329)
T ss_dssp EEEEEECTTSCEEECCHHHHCTTTGGGSCCTTCEEEEEECSSSCEECSTT----------EETTEEEESSCCGGGGGCCE
T ss_pred cceEEEECCCeEEEEccCCCCccccccccCCCCeeEEEECCCCccccCce----------eecceEEEcCCChHhCCCcE
Confidence 355679999999999998873 5578999999876541 111 01235899999999999 99
Q ss_pred EEEEeCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCC-CceeEEeECCEeccCCC-ceE
Q psy14540 78 QCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDP-PLTISWLKNGLPILSDA-EIT 155 (291)
Q Consensus 78 ~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p-~~~~~W~~~~~~~~~~~-~~~ 155 (291)
+|.+.+..|.......+.+...+ |. .. .......+.+|+.+.|.|.+ .+.| .+.+.|++++..+.... ++.
T Consensus 106 ~C~a~n~~g~~~~~~~~~v~~~~--p~-~~---~~~~~~~~~~G~~v~L~C~~-~g~p~~~~i~W~k~~~~l~~~~~~~~ 178 (329)
T 3oq3_B 106 LCTVTTKNGDCVQGIVRSHIRKP--PS-CI---PETYELGTHDKYGIDLYCGI-LYAKHYNNITWYKNNQELIIDGTKYS 178 (329)
T ss_dssp EEEEECTTSCEEEEEEEEEECCC--CS-CE---EEEEETTSSTTTCEEEECCC-CSCCCCCEEEEEETTEECCCSSSSEE
T ss_pred EEEEEeCCCceeeEEEEEEEcCC--Cc-Ee---ccccceEEeCCCcEEEEecc-CCCCCCceEEEEECCccCCCCCceEe
Confidence 99999887765444443444433 11 11 11112345689999999998 6888 89999999998874322 111
Q ss_pred EeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeC--CccCCce-
Q psy14540 156 IRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNT--VASDNHS- 232 (291)
Q Consensus 156 ~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~--~~~~~~~- 232 (291)
.. ...|.|.++..+|+|.|+|.|.|. .+.....
T Consensus 179 ~~--------------------------------------------~~~L~I~~v~~~D~G~Y~C~a~n~~~~g~~~~~~ 214 (329)
T 3oq3_B 179 QS--------------------------------------------GQNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVV 214 (329)
T ss_dssp EE--------------------------------------------TTEEEECSCCGGGCEEEEEEEEECCTTSSSCEEE
T ss_pred cC--------------------------------------------CCEEEEeecChhhCEEEEEEEEecccCCCceeEE
Confidence 11 235777777777888888888876 4443333
Q ss_pred ---eEEEEecCCC----CCCCCcccccCCceEEEEEEeecCCC---Cc-eEEEEECCEEc
Q psy14540 233 ---SNLRVNVPPH----IGPFTFGELMEGVRTQVACVVQSGDL---PL-SLQWYKNGLAI 281 (291)
Q Consensus 233 ---~~l~v~~~p~----~~~~~~~~~~~g~~v~l~C~~~~~~p---~~-~v~W~~~~~~l 281 (291)
+.|.|..+|. +..+....+.+|+.++|.|.+ .+.| ++ .+.|+++|..+
T Consensus 215 s~~~~l~V~~~~~~~~~~~~~~~~~v~~G~~~~l~C~~-~g~p~~~~~i~v~W~~~g~~i 273 (329)
T 3oq3_B 215 SRCKILTVIPSQDHRFKLILDPKINVTIGEPANITCTA-VSTSLLVDDVLIDWENPSGWI 273 (329)
T ss_dssp EEEEEEEEECCCCCCEEEECCSEEEECTTSCEEEEEEE-EETTCCTTCCEEEEECTTSCB
T ss_pred EeeEEEEEECCCCCCCceecCCeeEEecCCCEEEEEEE-EECCCCCCCcEEEEEECCeee
Confidence 6677776652 222233338999999999999 6665 67 89999999885
No 54
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A
Probab=99.96 E-value=4.6e-28 Score=176.00 Aligned_cols=182 Identities=20% Similarity=0.316 Sum_probs=131.5
Q ss_pred CCCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCC--eeEeceEEeeccceEEEEEEeecCCCCCeEEE
Q psy14540 1 SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGD--RFVMGQYMSLHGDVISHVNISSVRVEDSGIYQ 78 (291)
Q Consensus 1 s~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~ 78 (291)
.||.|...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+... ++.. .....+.+.|.|.+++..|+|.|+
T Consensus 3 ~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~----~~~~~~~~~L~i~~~~~~d~G~Y~ 78 (197)
T 2j8h_A 3 MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRI----QEFKGGYHQLIIASVTDDDATVYQ 78 (197)
T ss_dssp CCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCCCSSSEEE----EEETTTEEEEEECSCCGGGCSEEE
T ss_pred CCCEEEEcCCccEEcCCCEEEEEEEEeecCCCEEEEEECCEECccCCCcEEE----EEcCCCEEEEEECcCCHHhCEEEE
Confidence 4899999999999999999999999998888999999999887732 2222 122344568999999999999999
Q ss_pred EEEeCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEec
Q psy14540 79 CTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRS 158 (291)
Q Consensus 79 C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~ 158 (291)
|.+.+..+.....+.|.|...+..... .....+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+....+.....
T Consensus 79 C~~~n~~g~~~~~~~l~V~~~p~~~~~--~~~~~~~~~~~~~g~~~~l~C~~-~g~p~p~i~W~~~~~~~~~~~~~~~~~ 155 (197)
T 2j8h_A 79 VRATNQGGSVSGTASLEVEVPAKIHLP--KTLEGMGAVHALRGEVVSIKIPF-SGKPDPVITWQKGQDLIDNNGHYQVIV 155 (197)
T ss_dssp EEEEETTEEEEEEEEEEEEEEEEECCS--SCBTTBEEEEEETTCCCEEEEEE-EEESCCEEEEEESSCEECSSSSCEEEE
T ss_pred EEEEECCCceeEEEEEEEcCCCcCCCC--ccccccCeEEEeCCCEEEEEEEE-EecCCCcEEEEECCEEeecCCCEEEEE
Confidence 999988887788888888765422110 11122344678899999999999 588999999999999887665554432
Q ss_pred cCCceEEEEEee-CCCCCceeEEEEEEecCCCC
Q psy14540 159 SGEYTSSLSIAT-LSTGHSGNYTCVASNTVASD 190 (291)
Q Consensus 159 ~~~~~~~l~i~~-~~~~d~g~y~C~~~~~~~~~ 190 (291)
.. ....|.|.. +..+|.|.|+|.|.|..|..
T Consensus 156 ~~-~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~ 187 (197)
T 2j8h_A 156 TR-SFTSLVFPNGVERKDAGFYVVCAKNRFGID 187 (197)
T ss_dssp CS-SEEEEECTTCCCGGGCEEEEEEEEETTEEE
T ss_pred cC-CceEEEEeCCCCcccCEeEEEEEEeCCCcE
Confidence 22 234455555 55555555555555554443
No 55
>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2
Probab=99.96 E-value=1e-29 Score=206.68 Aligned_cols=270 Identities=17% Similarity=0.263 Sum_probs=171.8
Q ss_pred eeecceeeeecCCcEEEEEEecCCC--CCeeEEEECC--eecC------------------CCeeEeceEEeeccceEEE
Q psy14540 6 IYKFIQQTLQPGPPVSLKCIATGNP--TPHISWKLDG--YPLA------------------GDRFVMGQYMSLHGDVISH 63 (291)
Q Consensus 6 ~~~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~--~~~~------------------~~~~~~~~~~~~~~~~~~~ 63 (291)
+..+....+.+|++++|.|.+.+.+ .+.+.|++++ ..+. ..++.... ......++
T Consensus 3 l~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~---~~~~~~~~ 79 (434)
T 1igy_B 3 LQESGAELARPGASVKMSCKASGYTFTTYTIHWIKQRPGQGLEWIGYINPSSVYTNYNQRFKDKATLTR---DRSSNTAN 79 (434)
T ss_dssp EECCCCCEECTBCCEEECCEECSSCGGGCCCEEEEECTTCCEEEEEECCSSSCCCCCCGGGTTTEECCB---CGGGCBBC
T ss_pred eECCCCeEecCCCCEEEEEEccCCcccCceEEEEEECCCCCCEEEEEEccCCCceecCccccccEEEEE---ECCCCEEE
Confidence 3456677899999999999998753 6779999863 2110 01111100 01123457
Q ss_pred EEEeecCCCCCeEEEEEEeCCCCceeeeeeEEEEcCC-CCCcccceeccCCcceeecCCCceEEEEEeeCCCCCc-eeEE
Q psy14540 64 VNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAP-GQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPL-TISW 141 (291)
Q Consensus 64 l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~l~v~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W 141 (291)
|.|.+++.+|+|.|+|.+.+..+.......|.|.... ..| .... ..+ ...+.+|+.++|.|.+.+..|.+ .+.|
T Consensus 80 L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~~~~~P--~i~~-~~~-~~~~~~G~~v~L~C~~~g~~P~p~~v~W 155 (434)
T 1igy_B 80 IHLSSLTSDDSAVYYCVREGEVPYWGQGTTVTVSSAKTTPP--SVYP-LAP-GSAAQTNSMVTLGCLVKGYFPEPVTVTW 155 (434)
T ss_dssp EEECSBCGGGCSEECCCCSSSSCCCCCCEECEECCSCCBCC--CEEE-ECC-CCCCCCTTEEEEEEEEEEEBSSCCEEEE
T ss_pred EEECCCChHHCEEEEEEEEccccccCCceEEEEccCCCCCC--eEEE-cCC-ccccCCCCcEEEEEEEeeecCCCeEEEE
Confidence 9999999999999999998754444455667776422 112 1111 111 12347899999999995445776 9999
Q ss_pred eECCEeccCCCceEEeccCCc--eEEEEEeeCCCCCceeEEEEEEecCCCCCC----------------------ceEEE
Q psy14540 142 LKNGLPILSDAEITIRSSGEY--TSSLSIATLSTGHSGNYTCVASNTVASDNH----------------------SSNLR 197 (291)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~--~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~----------------------~~~~~ 197 (291)
++++..+...........+.+ ...|.|..+..+| |.|+|.|.|..+.... .+.+.
T Consensus 156 ~k~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~v~~~ 234 (434)
T 1igy_B 156 NSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSPRPS-ETVTCNVAHPASSTKVDKKIVPRDCGCKPCICTVPEVSSVFIF 234 (434)
T ss_dssp TTTTBCSSEEECCCEECSSCEEEEEEEEEETTTTTS-SCCEEEEECTTTTCCEEEECCCCCCCCCCCCCCCSSSCCEEEE
T ss_pred eeCCcCCCeEecCceecCCcEEEEEEEEEcchhcCC-CcEEEEEEeCCCCccceeeccCCCCCCccccCCCCcCcEEEEe
Confidence 999875321100000111111 3468888888888 9999999998775321 11111
Q ss_pred -------------------Eec------------------------------------cceEEEEeeeecCCCeeEEEEe
Q psy14540 198 -------------------VNE------------------------------------YTSSLSIATLSTGHSGNYTCVA 222 (291)
Q Consensus 198 -------------------~~~------------------------------------~~~~l~i~~~~~~~~g~y~C~~ 222 (291)
+.. ..+.|.|..+..+|+|.|+|.|
T Consensus 235 ~p~~~~~v~~G~~~~L~C~~~g~~p~P~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a 314 (434)
T 1igy_B 235 PPKPKDTLLITVTPKVTCVVVDISKDDPEVQFSWFVDNVEVHTAQTQPREEQFNSTFRVVSALPIMHQDWLNGKEFKCRV 314 (434)
T ss_dssp CCCHHHHHSTTSCCEEEEEECCCCSSCCCCCBCBBSSSCCBCCCSCCCCCCCCSSSCCCCCCEECCHHHHHHTCCCBCCB
T ss_pred CCChHHhcccCCCcEEEEEEeccccCCCCeEEEEEeCCcccCCcccCcceeCCCCcEEEEEEEEECHHHccCCCcEEEEE
Confidence 000 0124677777888999999999
Q ss_pred eeCCccCC--ceeEE--EEecCCCCCCCCccc-ccCCceEEEEEEeecCCCC-ceEEEEECCEEccC
Q psy14540 223 SNTVASDN--HSSNL--RVNVPPHIGPFTFGE-LMEGVRTQVACVVQSGDLP-LSLQWYKNGLAISQ 283 (291)
Q Consensus 223 ~~~~~~~~--~~~~l--~v~~~p~~~~~~~~~-~~~g~~v~l~C~~~~~~p~-~~v~W~~~~~~l~~ 283 (291)
.|..+... ..+.+ .+..+|.+...+... ...|+.++|.|.+.+.+|+ ++|+|+|||.++..
T Consensus 315 ~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~ 381 (434)
T 1igy_B 315 NSAAFPAPIEKTISKTKGKPRAPQVYTIPPPKEQMAKDKVSLTCMITDFFPEDITVEWQSDGQAPEN 381 (434)
T ss_dssp CCSSCSSCCCCCCCCCCSCCBCCCCEEECCCSSSSSSSEEEEEEEEEEEBCSCEEEEEEETTSCCSC
T ss_pred ECCCCCCceeEEEeccCCCCcCCEEEEECCCHHHhcCCcEEEEEEEEeeECCCeEEEEEECCEecCC
Confidence 99887543 33333 345577776554433 4467789999999443554 59999999998853
No 56
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}
Probab=99.96 E-value=1.8e-28 Score=189.02 Aligned_cols=217 Identities=19% Similarity=0.325 Sum_probs=154.1
Q ss_pred CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEE
Q psy14540 2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTA 81 (291)
Q Consensus 2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~ 81 (291)
||.|...+....+.+|++++|.|.+.+. +.|++++.... .. ......+.|.|.+++..|+|.|+|.+
T Consensus 4 ~P~i~~~~~~~~v~~G~~v~L~C~~~~~----v~W~~~~~~~~----~~-----~~~~~~~~L~i~~~~~~d~G~Y~C~~ 70 (292)
T 4dkd_C 4 IPVIEPSVPELVVKPGATVTLRCVGNGS----VEWDGPPSPHW----TL-----YSDGSSSILSTNNATFQNTGTYRCTE 70 (292)
T ss_dssp CCEEESCCSSCEECTTCCEEEEEECSSC----CCBCCCCCSSC----EE-----CCBTTEEEEEESSCCGGGCSCEEECC
T ss_pred CceecCCCCeEEEcCCCcEEEEEcCCCc----eEEccCCCCce----EE-----eccCceEEEEEcccccccCEEEEEEE
Confidence 7899999989999999999999999863 99997653211 11 11223467999999999999999999
Q ss_pred eCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCC--ceeEEeEC-CEeccCCCceEEec
Q psy14540 82 TNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPP--LTISWLKN-GLPILSDAEITIRS 158 (291)
Q Consensus 82 ~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~--~~~~W~~~-~~~~~~~~~~~~~~ 158 (291)
.+..+.....+.|.|..++.. ....+....+.+|+.+.|.|.+. + |. +.+.|+++ +..+....+....
T Consensus 71 ~n~~~~~~~~~~l~V~~~~~~------~~~~~~~~~v~~g~~v~l~C~~~-~-~~~~~~v~W~~~~~~~~~~~~~~~~~- 141 (292)
T 4dkd_C 71 PGDPLGGSAAIHLYVKDPARP------WNVLAQEVVVFEDQDALLPCLLT-D-PVLEAGVSLVRVRGRPLMRHTNYSFS- 141 (292)
T ss_dssp CC----CCEEECCEECCSSCC------EEESCSEEEEETTSCEECCEEES-S-GGGGSSEEEEEGGGCCCCSSCCEECC-
T ss_pred ccCCCCcceEEEEEEcCcccc------ccccCCeEEEcCCCcEEEeeeCC-C-CCcceeEEEEecCCCccccCCccccc-
Confidence 987777788888888765421 12234457788999999999994 4 43 78999997 4444332222111
Q ss_pred cCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCcc-CCceeEEEE
Q psy14540 159 SGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVAS-DNHSSNLRV 237 (291)
Q Consensus 159 ~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~-~~~~~~l~v 237 (291)
....|.|.++..+|+|.|+|.+.|..+. .+..+.|.|
T Consensus 142 ------------------------------------------~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~s~~~~l~V 179 (292)
T 4dkd_C 142 ------------------------------------------PWHGFTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKV 179 (292)
T ss_dssp ------------------------------------------SSSCCEETTCCGGGCSEEEEEECSTTSCEECCCEEEEE
T ss_pred ------------------------------------------CCceEEECCCCHHHCeEEEEEEEeCCCceeEEEEEEEE
Confidence 0123667777788888888888876643 355778888
Q ss_pred ec----CCCCCCCCccc-ccCCceEEEEEEeecCCCCceEEEEECCEEcc
Q psy14540 238 NV----PPHIGPFTFGE-LMEGVRTQVACVVQSGDLPLSLQWYKNGLAIS 282 (291)
Q Consensus 238 ~~----~p~~~~~~~~~-~~~g~~v~l~C~~~~~~p~~~v~W~~~~~~l~ 282 (291)
.. +|.+...+... +.+|+.+.|.|.+.+..+++.+.|++++..+.
T Consensus 180 ~~~~~~~p~i~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~w~~~~~~~~ 229 (292)
T 4dkd_C 180 QKVIPGPPALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLA 229 (292)
T ss_dssp ECCCCSSCEEEEESSCBCCCSSSCEEEEEEEEESSSCCEEECCBSSCCCC
T ss_pred eCCCCCCCeEEccCCceeEecCCCEEEEEEecCCCCceEEEEeCCCcccc
Confidence 76 67666655554 68999999999995444457899999988765
No 57
>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*
Probab=99.96 E-value=3e-27 Score=193.40 Aligned_cols=269 Identities=20% Similarity=0.348 Sum_probs=163.4
Q ss_pred eeecceeeeecCCcEEEEEEecCCC--CCeeEEEEC--CeecC------------------CCeeEeceEEeeccceEEE
Q psy14540 6 IYKFIQQTLQPGPPVSLKCIATGNP--TPHISWKLD--GYPLA------------------GDRFVMGQYMSLHGDVISH 63 (291)
Q Consensus 6 ~~~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~--~~~~~------------------~~~~~~~~~~~~~~~~~~~ 63 (291)
...|....+.+|++++|.|.+.+.+ .+.+.|+|+ +.... ..++... .......++
T Consensus 4 ~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~---~~~~~~~~~ 80 (457)
T 1hzh_H 4 LVQSGAEVKKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFT---ADTSANTAY 80 (457)
T ss_dssp EEECCCEEECTTCCEEECEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEE---EETTTTEEE
T ss_pred EecCCceEEcCCCCEEEEEEecCccccCcEEEEEEeCCCCCcEEEEEEecCCCceecCccccCceEEE---EeCCCCEEE
Confidence 3456678899999999999998765 678999984 22110 0111110 011234578
Q ss_pred EEEeecCCCCCeEEEEEEeCCCC------------ceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEee
Q psy14540 64 VNISSVRVEDSGIYQCTATNRVG------------SQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVT 131 (291)
Q Consensus 64 l~i~~~~~~d~G~y~C~~~~~~~------------~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~ 131 (291)
|.|.+++.+|+|.|+|.+.+..+ .......|.|...+..++ ..... .....+.+|+.++|.|.+.
T Consensus 81 L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P--~i~~~-~~~~~~~~g~~v~L~C~~~ 157 (457)
T 1hzh_H 81 MELRSLRSADTAVYYCARVGPYSWDDSPQDNYYMDVWGKGTTVIVSSASTKGP--SVFPL-APSSKSTSGGTAALGCLVK 157 (457)
T ss_dssp EEECSCCGGGCEEEEEEECCCCCSSCCTTTTCSCCBCCCCEEEEECSCCCBCC--EEEEE-CCCSCCCTTCCEEEEEEEE
T ss_pred EEECCCCcccCEEEEEEEecCCccccccccccccceECCcEEEEecCCCCCCC--eEEec-CccccccCCCcEEEEEEEe
Confidence 99999999999999999987654 223455677765321111 11111 1123457899999999996
Q ss_pred CCCCC-ceeEEeECCEeccCCCceEE-eccCCc--eEEEEEeeCCCCCceeEEEEEEecCCCCCC---------------
Q psy14540 132 KGDPP-LTISWLKNGLPILSDAEITI-RSSGEY--TSSLSIATLSTGHSGNYTCVASNTVASDNH--------------- 192 (291)
Q Consensus 132 ~~~p~-~~~~W~~~~~~~~~~~~~~~-~~~~~~--~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~--------------- 192 (291)
...|. +.+.|++++..+........ ...+.. ...|.|..+..+| |.|+|.|.|..+....
T Consensus 158 g~~P~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~~~ 236 (457)
T 1hzh_H 158 DYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKAEPKSCDKTHTC 236 (457)
T ss_dssp SBBSCCCEEEETTTTBCTTEEEEEEEECTTSCEEEEEEEEECSGGGGT-SCCEEEEEEGGGTEEEEEECCCCCSCSSCSC
T ss_pred EEeCCCeEEEEEeCCEeccceEcCceECCCCCEEEEEEEEecccccCC-ceEEEEEEeCCCCcceeEEecccCCCccccc
Confidence 44474 89999999865432111111 111211 2468888888889 9999999997653110
Q ss_pred ----------ceEE--E-------------------Eecc------------------------------ceEEEEeee-
Q psy14540 193 ----------SSNL--R-------------------VNEY------------------------------TSSLSIATL- 210 (291)
Q Consensus 193 ----------~~~~--~-------------------~~~~------------------------------~~~l~i~~~- 210 (291)
...+ . +... ...+.+...
T Consensus 237 ~~~~~~~~~~~p~v~~~~p~~~~~~~~G~~v~L~C~~~g~~p~p~~~~i~W~k~~~~~~~~~~~~~~~~~~g~~~~~~~l 316 (457)
T 1hzh_H 237 PPCPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVL 316 (457)
T ss_dssp CSCCCCCCSSSCEEEEECCCHHHHHCTTSCCCEEEEEECCCTTCCCCEEEEEETTEEECCCEEEEEEECTTSCEEEEEEE
T ss_pred CCCCCccccCCceEEeECcCchhhcccCCceEEEEEEEcccCCCCceEEEEEeCCccccccccccceecCCCcEEEEEEE
Confidence 0111 1 0000 011222221
Q ss_pred --ecCC---CeeEEEEeeeCCccCCceeEEE----EecCCCCCCCCccc--ccCCceEEEEEEeecC-CCC-ceEEEEEC
Q psy14540 211 --STGH---SGNYTCVASNTVASDNHSSNLR----VNVPPHIGPFTFGE--LMEGVRTQVACVVQSG-DLP-LSLQWYKN 277 (291)
Q Consensus 211 --~~~~---~g~y~C~~~~~~~~~~~~~~l~----v~~~p~~~~~~~~~--~~~g~~v~l~C~~~~~-~p~-~~v~W~~~ 277 (291)
...| +|.|+|.|.|..+.......+. +..+|.+...+... +..|+ ++|.|.+ .| +|+ +.|.|+||
T Consensus 317 ~i~~~d~~d~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~~~~-~~l~C~~-~g~~p~~~~v~W~k~ 394 (457)
T 1hzh_H 317 TVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQ-VSLTCLV-KGFYPSDIAVEWESN 394 (457)
T ss_dssp CCCHHHHHHTCCEEEEEECTTSSSCEEEEECCCCCCCBCCEEEEECCCGGGGGSSE-EEEEEEE-EEEBSSCCEEEEEET
T ss_pred EECHHHccCCCcEEEEEeCCCCCCcceEEEEcccCCCCCCeEEEECCCccccCCCc-EEEEEEE-EeEECCCCEEEEEEC
Confidence 1334 9999999998765443333332 34566655443332 55566 9999999 55 443 49999999
Q ss_pred CEEccC
Q psy14540 278 GLAISQ 283 (291)
Q Consensus 278 ~~~l~~ 283 (291)
|.+|.+
T Consensus 395 g~~l~~ 400 (457)
T 1hzh_H 395 GQPENN 400 (457)
T ss_dssp TEECCC
T ss_pred CEECcc
Confidence 999854
No 58
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*
Probab=99.96 E-value=1.6e-27 Score=181.08 Aligned_cols=200 Identities=21% Similarity=0.306 Sum_probs=143.4
Q ss_pred eeeecCCcEEEEEEecC-CCCC--eeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCe--EEEEEEeCCCC
Q psy14540 12 QTLQPGPPVSLKCIATG-NPTP--HISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSG--IYQCTATNRVG 86 (291)
Q Consensus 12 ~~v~~g~~v~l~C~~~~-~~~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G--~y~C~~~~~~~ 86 (291)
..+.+|+.++|.|.+.+ .|.+ .+.|++++..+.... ...+.......+.+++..|+| .|+|.+.+..+
T Consensus 13 ~~v~~G~~v~l~C~~~g~~p~p~~~v~W~k~~~~l~~~~-------~~~~~~~~~~~~~~~~~~d~g~g~Y~C~a~n~~~ 85 (265)
T 2oz4_A 13 RVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTV-------TYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQ 85 (265)
T ss_dssp SEEETTEEEEEEEEEESCSCGGGCEEEEEETTEECCCEE-------EECSSEEEEEEEEEECGGGCEEEEEEEEEEETTE
T ss_pred ceEecCCCEEEEEEccCCCCCcceEEEEEeCCEECCceE-------eeCCCeEEEEeecccccccCCcceEEEEEecCCC
Confidence 47899999999999998 7766 899999998876411 111222111222244778888 49999999888
Q ss_pred ceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEE
Q psy14540 87 SQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSL 166 (291)
Q Consensus 87 ~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l 166 (291)
.....+.|.|...+. | ... .....+.+|+.+.|.|.+ . |.+.+.| +|..+.... .
T Consensus 86 ~~~~~~~l~V~~~p~-p--~~~----~~~~~v~~G~~v~l~C~~-~--p~~~i~W--~g~~~~~~~---------~---- 140 (265)
T 2oz4_A 86 SQETLQTVTIYSFPA-P--NVI----LTKPEVSEGTEVTVKCEA-H--PRAKVTL--NGVPAQPLG---------P---- 140 (265)
T ss_dssp EEEEEEEEEEECCCC-C--EEE----ESCSEEETTCEEEEEEEC-C--TTSEEEE--SSCSSSCCS---------S----
T ss_pred CcEEEEEEEEeCCCC-c--eee----cCCceecCCCcEEEEEEc-c--CCCEEEE--CCEEccCCC---------C----
Confidence 888888899887553 1 111 123457789999999998 3 8899999 776652110 0
Q ss_pred EEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCC-ccCC---ceeEEEEecCCC
Q psy14540 167 SIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTV-ASDN---HSSNLRVNVPPH 242 (291)
Q Consensus 167 ~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~-~~~~---~~~~l~v~~~p~ 242 (291)
...|.|..+..+|+|.|+|.|.|.. |... ..+.|.|..+|.
T Consensus 141 -----------------------------------~~~l~i~~~~~~~~g~Y~C~a~n~~~g~~~~~s~~~~l~V~~~p~ 185 (265)
T 2oz4_A 141 -----------------------------------RAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPR 185 (265)
T ss_dssp -----------------------------------EECCEEECCGGGTTEEEEEEEEEECSSSEEEEEEEEEEEEEEEEE
T ss_pred -----------------------------------cEEEEEccccccCCceEEEEEEcCCCCCcccccccEEEEEEeCCc
Confidence 1245566777778888888887544 4433 667788888777
Q ss_pred CCCCCc--c-cccCCceEEEEEEeecCCCCceEEEEECCE
Q psy14540 243 IGPFTF--G-ELMEGVRTQVACVVQSGDLPLSLQWYKNGL 279 (291)
Q Consensus 243 ~~~~~~--~-~~~~g~~v~l~C~~~~~~p~~~v~W~~~~~ 279 (291)
+..... . .+.+|+.++|.|.+ .|.|.|.+.|+|+|.
T Consensus 186 ~~~~~~p~~~~v~~g~~~~l~C~~-~g~P~p~i~W~~~~~ 224 (265)
T 2oz4_A 186 LDERDCPGNWTWPENSQQTPMCQA-WGNPLPELKCLKDGT 224 (265)
T ss_dssp CCGGGSCSEEEEETTCEECCCCCC-EEESCCEEEEEETTT
T ss_pred cccccCCCccEEcCCCeEEEEeEC-ccCCCCeEEEEECCc
Confidence 655432 2 38899999999999 899999999999987
No 59
>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A
Probab=99.96 E-value=3.7e-28 Score=189.91 Aligned_cols=243 Identities=18% Similarity=0.264 Sum_probs=146.5
Q ss_pred CCcceeecceeeeecC--CcEEEEEEecCC-C-CCeeEEEECCeecCCCeeEeceEEeecc--ceEEEEEEeecCCCCCe
Q psy14540 2 HPQLIYKFIQQTLQPG--PPVSLKCIATGN-P-TPHISWKLDGYPLAGDRFVMGQYMSLHG--DVISHVNISSVRVEDSG 75 (291)
Q Consensus 2 ~p~~~~~~~~~~v~~g--~~v~l~C~~~~~-~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G 75 (291)
||.+.+.+.......| +.+.|.|.+.+. | .+.|.|+++|..+........... ..+ ...+.|.|.+....|+|
T Consensus 7 ~P~v~~~~~~~~~~~~~~~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~-~~g~~~~~s~l~i~~~~~~d~g 85 (323)
T 2wqr_A 7 PPTVKILQSSCDGGGHFPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQ-EGELASTQSELTLSQKHWLSDR 85 (323)
T ss_dssp CCCCEEEEECCCTTSCCCSEEEEEEEEEEECCCCEEEEEEETTEECCGGGEEEEEEE-ETTEEEEEEEEEEEHHHHHTTC
T ss_pred CCEEEEeCCChHHhccCCCcEEEEEEEeCeECCCeEEEEEECCEEcccceecCCcCc-cCCcEEEEEEEEEcHHHcCCCC
Confidence 6777665544434444 699999999873 4 478999999998873321111111 111 12356888888888999
Q ss_pred EEEEEEeCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCc---eeEEeECC-EeccCC
Q psy14540 76 IYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPL---TISWLKNG-LPILSD 151 (291)
Q Consensus 76 ~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~---~~~W~~~~-~~~~~~ 151 (291)
.|+|.+.+..+.....+.+.+... ..........+....+.+|+.++|.|.+....|.+ .+.|++++ ..+...
T Consensus 86 ~Y~C~a~n~~~~~~~~~~~~~~~~---~~~p~v~~~~p~~~~v~~G~~v~L~C~~~g~~P~p~~~~i~W~k~~g~~~~~~ 162 (323)
T 2wqr_A 86 TYTCQVTYQGHTFEDSTKKCADSN---PRGVSAYLSRPSPFDLFIRKSPTITCLVVDLAPSKGTVQLTWSRASGKPVNHS 162 (323)
T ss_dssp CEEEEEEETTEEEEEEECCCCCSS---GGGCEEEECCCCHHHHHTSSCCEEEEEEEEECCCSSCCEEEEEETTCCCCCCC
T ss_pred cEEEEEEeCCCCcceeeecCCCCC---CCCCEEEEcCCCHHHhccCCeEEEEEEEeccCCCCCceEEEEEECCCcccccc
Confidence 999999986654333322111111 11111222334445577899999999985445655 99999975 333211
Q ss_pred CceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCc
Q psy14540 152 AEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNH 231 (291)
Q Consensus 152 ~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~ 231 (291)
..... ....|.|. ..+.|.|.++..+|+|.|+|.|.|.......
T Consensus 163 ~~~~~----------------~~~~g~~~--------------------~~~~L~I~~~~~~D~G~Y~C~a~n~~~~~~~ 206 (323)
T 2wqr_A 163 TRKEE----------------KQRNGTLT--------------------VTSTLPVGTRDWIEGETYQCRVTHPHLPRAL 206 (323)
T ss_dssp CCEEE----------------ECTTSCEE--------------------EEEEEECCHHHHHTTCCEEEEEECTTSSSCE
T ss_pred cCCCc----------------cCCCCCEE--------------------EEEEEEECHHHccCCCCEEEEEECCCCCCCe
Confidence 11100 01112222 1346888888889999999999887643322
Q ss_pred eeEEEE----ecCCCCCCCCcc-cccCCceEEEEEEeecCCCC-ceEEEEECCEEccCC
Q psy14540 232 SSNLRV----NVPPHIGPFTFG-ELMEGVRTQVACVVQSGDLP-LSLQWYKNGLAISQP 284 (291)
Q Consensus 232 ~~~l~v----~~~p~~~~~~~~-~~~~g~~v~l~C~~~~~~p~-~~v~W~~~~~~l~~~ 284 (291)
...+.+ ..+|.+...+.. ....|+.++|.|.+.+.+|+ +.|.|+|||..|...
T Consensus 207 ~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~l~~~ 265 (323)
T 2wqr_A 207 MRSTTKTSGPRAAPEVYAFATPEWPGSRDKRTLACLIQNFMPEDISVQWLHNEVQLPDA 265 (323)
T ss_dssp EEEECCCCSCCBCCEEEEEECCCCTTCTTEEEEEEEEEEEBSSCCEEEEEETTEECCGG
T ss_pred eeEEEccCCCCCCCEEEEeCCChHHhcCCcEEEEEEeeeeeCCCcEEEEEECCEECCCC
Confidence 333321 234544433222 22349999999999433554 489999999998654
No 60
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Probab=99.95 E-value=4.4e-27 Score=170.73 Aligned_cols=178 Identities=21% Similarity=0.370 Sum_probs=128.3
Q ss_pred CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecC-CCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEE
Q psy14540 2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLA-GDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCT 80 (291)
Q Consensus 2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~ 80 (291)
||.|...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+. ...+.. ......++|.|.+++.+|+|.|+|.
T Consensus 7 ~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~-----~~~~~~~~L~i~~~~~~d~G~Y~C~ 81 (197)
T 3lcy_A 7 APGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKM-----SSDGRTHTLTVMTEEQEDEGVYTCI 81 (197)
T ss_dssp EEEEEECCCCEEEETTSEEEEEEEEEEESCCEEEEEETTEEECCCSSEEE-----EESSSEEEEEEECCSGGGCEEEEEE
T ss_pred CCcccccCCceEEeCCCcEEEEEEEecCCCCEEEEEECCEECCCCccEEE-----EeCCCEEEEEEecCCccCCEEEEEE
Confidence 6888899999999999999999999888888999999998876 333222 2233456799999999999999999
Q ss_pred EeCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccC
Q psy14540 81 ATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSG 160 (291)
Q Consensus 81 ~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~ 160 (291)
+.+..+.......+.|...+.... .........+.+|+.+.|.|.+ .+.|.+.+.|++++..+....+.......
T Consensus 82 ~~n~~~~~~~~~~l~v~~~p~~~~----~~~~~~~~~~~~g~~~~l~C~~-~~~p~p~v~W~~~~~~~~~~~~~~~~~~~ 156 (197)
T 3lcy_A 82 ATNEVGEVETSSKLLLQATPQFHP----GYPLKEKYYGAVGSTLRLHVMY-IGRPVPAMTWFHGQKLLQNSENITIENTE 156 (197)
T ss_dssp EECSSCEEEEEEEEEEEEEEEECT----TSCCCSEEEEETTSCEEEEEEE-EEESCCEEEEEETTEECCCCSSEEEEECS
T ss_pred EECCCCceeEEEEEEEEcCCCCCC----CccCCcceeecCCCeEEEEEEE-eeeeCCeeEEeECCEECCCCCceEEEEcC
Confidence 998888877888888876542210 0112244567899999999999 68899999999999998766655544322
Q ss_pred CceEEEEEeeCCC-CCceeEEEEEEecCCCC
Q psy14540 161 EYTSSLSIATLST-GHSGNYTCVASNTVASD 190 (291)
Q Consensus 161 ~~~~~l~i~~~~~-~d~g~y~C~~~~~~~~~ 190 (291)
. ...|.|..+.. +|.|.|+|.|.|..|..
T Consensus 157 ~-~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~ 186 (197)
T 3lcy_A 157 H-YTHLVMKNVQRKTHAGKYKVQLSNVFGTV 186 (197)
T ss_dssp S-EEEEEESSCCHHHHCEEEEEEEECSSCEE
T ss_pred C-EEEEEEccccchhhCceEEEEEEcCcCce
Confidence 1 24455555442 44455555444444433
No 61
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Probab=99.95 E-value=2.6e-26 Score=166.39 Aligned_cols=172 Identities=20% Similarity=0.331 Sum_probs=120.9
Q ss_pred CCcceeecceeeeecCCcEEEEEEec-CCCCCeeEEEECCeecCCCeeEeceEEeecc---c--eEEEEEEeecCCCCCe
Q psy14540 2 HPQLIYKFIQQTLQPGPPVSLKCIAT-GNPTPHISWKLDGYPLAGDRFVMGQYMSLHG---D--VISHVNISSVRVEDSG 75 (291)
Q Consensus 2 ~p~~~~~~~~~~v~~g~~v~l~C~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~---~--~~~~l~i~~~~~~d~G 75 (291)
+|.|+..|....+.+|+++.|.|.+. +.|.+.+.|++++..+............... . ....|.|.+++..|+|
T Consensus 2 ~~~~~~~p~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G 81 (195)
T 2c5d_C 2 ESPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDTG 81 (195)
T ss_dssp CCSEEECCCCEEECTTCCEEEEEEEEEESSCCCCEEEETTEECCSCEEEEEEEECSSSTTSEEEEEEEEEESSCCSTTCE
T ss_pred CCeeccChhheEEecCCcEEEecccccCCCCcEEEEEECCEEcccCCCCceEEEEccccccceeeccEEEEEeccccCCc
Confidence 78999999999999999999999999 8888899999999988743211101111111 0 1468999999999999
Q ss_pred EEEEEEeCCCCce-eeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCc-eeEEeECCEeccCCCc
Q psy14540 76 IYQCTATNRVGSQ-THSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPL-TISWLKNGLPILSDAE 153 (291)
Q Consensus 76 ~y~C~~~~~~~~~-~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~~~~~~~~~~~ 153 (291)
.|+|.+.+..+.. ...+.|.|...| .....+....+.+|+.+.|.|.+ .+.|.+ .+.|++++..+.....
T Consensus 82 ~Y~C~~~~~~~~~~~~~~~l~V~~~p-------~~~~~~~~~~~~~g~~~~l~C~~-~g~p~p~~v~W~~~~~~~~~~~~ 153 (195)
T 2c5d_C 82 QYQCLVFLGHQTFVSQPGYVGLEGLP-------YFLEEPEDRTVAANTPFNLSCQA-QGPPEPVDLLWLQDAVPLATAPG 153 (195)
T ss_dssp EEEEEEEETTEEEECCCEEEEECCSC-------EEEECCCCEEECTTCCEEEEEEE-ECSSCCCEEEEEESSCBSSSSTT
T ss_pred EEEEEEEeCCCceecccEEEEEecCC-------eEEcCCCcEEEcCCCEEEEEeEC-CCCCCCCEEEEEECCEeccCCCC
Confidence 9999999866543 334677776554 11233445778899999999999 688988 9999999988765433
Q ss_pred eEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCC
Q psy14540 154 ITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVAS 189 (291)
Q Consensus 154 ~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 189 (291)
. .....|.|..+. |+|.|+|.|.|..|.
T Consensus 154 ~------~~~~~L~i~~~~--d~G~Y~C~a~N~~g~ 181 (195)
T 2c5d_C 154 H------GPQRSLHVPGLN--KTSSFSCEAHNAKGV 181 (195)
T ss_dssp S------SCCEEEEECCCS--SCEEEEEEEEETTEE
T ss_pred c------CCCCeEEEcccc--cCceEEEEEEcCCCc
Confidence 2 123345555443 445555555554443
No 62
>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2
Probab=99.95 E-value=2e-27 Score=187.27 Aligned_cols=255 Identities=20% Similarity=0.322 Sum_probs=134.3
Q ss_pred eecceeeeecCCcEEEEEEecCC--CCCeeEEEEC--CeecC------------------CCeeEeceEEeeccceEEEE
Q psy14540 7 YKFIQQTLQPGPPVSLKCIATGN--PTPHISWKLD--GYPLA------------------GDRFVMGQYMSLHGDVISHV 64 (291)
Q Consensus 7 ~~~~~~~v~~g~~v~l~C~~~~~--~~~~v~W~~~--~~~~~------------------~~~~~~~~~~~~~~~~~~~l 64 (291)
..|....+.+|++++|.|.+.+. +.+.+.|+|+ +..+. ..++... ........+|
T Consensus 5 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~---~~~~~~~~~L 81 (344)
T 1za6_B 5 VQSGAEVVKPGASVKISCKASGYTFTDHAIHWVKQNPGQRLEWIGYFSPGNDDFKYNERFKGKATLT---ADTSASTAYV 81 (344)
T ss_dssp EECCCEEECTTCCEEEEEEEESSCTTSSCEEEEEECSSSCEEEEEEEETTTTEEEECTTTBTTEEEE---EETTTTEEEE
T ss_pred eCCCCeEEeCCCcEEEEEEcCCccccccEEEEEEECCCCCcEEEEEEecCCCceEECcccCCcEEEE---EecCCCEEEE
Confidence 45667789999999999999875 3678999996 33221 0111110 0112345789
Q ss_pred EEeecCCCCCeEEEEEEeCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCC-ceeEEeE
Q psy14540 65 NISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPP-LTISWLK 143 (291)
Q Consensus 65 ~i~~~~~~d~G~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~-~~~~W~~ 143 (291)
.|.+++.+|+|.|+|.+.+..+.......|.|...+..++ ..... .....+.+|+.++|.|.+.+..|. +.+.|++
T Consensus 82 ~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~l~V~~~~~~~P--~i~~~-~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k 158 (344)
T 1za6_B 82 ELSSLRSEDTAVYFCTRSLNMAYWGQGTLVTVSSASTKGP--SVFPL-APSSKSTSGGTAALGCLVKDYFPEPVTVSWNS 158 (344)
T ss_dssp EECSCCGGGCEEEEEEETTTTCEECCCEEEEECSSCCBCC--EEEEE-CCSCTTTSSSEEEEEEEEEEEBSSCCCEEETT
T ss_pred EECCCCcccCEEEEEEEecCcceecCcEEEEEecCCCCCC--eEEEc-cccccccCCCcEEEEEEEeeEECCCeEEEEec
Confidence 9999999999999999988554455566778774321111 11111 112345789999999999544465 7999999
Q ss_pred CCEeccCCCc-eEEeccCCc--eEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEE
Q psy14540 144 NGLPILSDAE-ITIRSSGEY--TSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTC 220 (291)
Q Consensus 144 ~~~~~~~~~~-~~~~~~~~~--~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C 220 (291)
++..+..... ......+.. ...|.|..+..+| |.|+|.|.|..+.......+.+... +. .+.|
T Consensus 159 ~g~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~~~~~~~~v~---~~----------~~~~ 224 (344)
T 1za6_B 159 GALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEPKSC---DK----------THTC 224 (344)
T ss_dssp TTBCTTEEECCCEECTTSCEEEEEEEEEETTHHHH-BCEEEEEEEGGGTEEEEEEECCCCC-------------------
T ss_pred CCccCceeECCCeECCCCCEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCccceEeeccccc---cc----------cccc
Confidence 9876421100 000111110 1234444444444 5555555544432111111000000 00 0111
Q ss_pred EeeeCCccCCceeEEEEecCCCCCCCCccc-ccCCceEEEEEEeecCCC-CceEEEEECCEEccC
Q psy14540 221 VASNTVASDNHSSNLRVNVPPHIGPFTFGE-LMEGVRTQVACVVQSGDL-PLSLQWYKNGLAISQ 283 (291)
Q Consensus 221 ~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~-~~~g~~v~l~C~~~~~~p-~~~v~W~~~~~~l~~ 283 (291)
......... .....+..+|.+....... ...|+.++|.|.+.+.+| .+.|.|+|||..+..
T Consensus 225 ~~~~~~~~l--~~~~~~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~ 287 (344)
T 1za6_B 225 PPCGGGSSG--GGSGGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENN 287 (344)
T ss_dssp ----------------CCBCCEEEEECCCGGGGGSSSEEEEEEEEEEBSSCCEEEEESSSSCCCS
T ss_pred CCCCCCccc--cccCCCCcCCEEEEeCCChHhccCCcEEEEEEEeeEECCCeEEEEEECCeECCC
Confidence 110000000 0000112345444332222 334667999999933345 369999999988753
No 63
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}
Probab=99.95 E-value=4.5e-27 Score=170.02 Aligned_cols=182 Identities=25% Similarity=0.458 Sum_probs=133.9
Q ss_pred CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCC--CeeEeceEEeeccceEEEEEEeecCCCCCeEEEE
Q psy14540 2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAG--DRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQC 79 (291)
Q Consensus 2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C 79 (291)
||.|...+....+.+|++++|.|.+.+.|.+.+.|++++..+.. .++.. .... ..|.|.+++..|+|.|+|
T Consensus 7 ~P~i~~~~~~~~~~~G~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~-----~~~~--~~L~i~~~~~~d~G~Y~C 79 (192)
T 2iep_A 7 APVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSI-----RENG--QLLTILSVEDSDDGIYCC 79 (192)
T ss_dssp EEEESSCCCEEEEETTSCEEEECCEEEESCCEEEEEETTEECCTTCTTEEE-----EGGG--TEEEESSCCGGGCEEEEE
T ss_pred CceeecCccceeeeCCCcEEEEeeCCCCCCCeEEEEECCEEccccCccEEE-----cCCc--cEEEEcCCCcccCeEEEE
Confidence 68888888888999999999999998888889999999988762 22222 1111 258999999999999999
Q ss_pred EEeCCCCc-eeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEec
Q psy14540 80 TATNRVGS-QTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRS 158 (291)
Q Consensus 80 ~~~~~~~~-~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~ 158 (291)
.+.+..+. ......+.|...+. ....+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+....+.....
T Consensus 80 ~~~~~~~~~~~~~~~l~v~~~p~-------~~~~~~~~~~~~g~~~~l~C~~-~g~p~~~v~W~~~~~~~~~~~~~~~~~ 151 (192)
T 2iep_A 80 TANNGVGGAVESCGALQVKMKPK-------ITRPPINVKIIEGLKAVLPCTT-MGNPKPSVSWIKGDSALRENSRIAVLE 151 (192)
T ss_dssp EEECSSSCCEEEEEEEEEEEEEE-------EEECCCCEEEETTSCEEECCEE-EEESCCEEEEEETTEECCCCSSEEECT
T ss_pred EEEcCCCceeEeEEEEEEEeCCc-------cccCCcceEEeCCCcEEEEEEE-eccCCceEEEEeCCEEccCCCcEEEec
Confidence 99987766 45556677765431 1123345678899999999998 688889999999998886554433221
Q ss_pred cCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccC-CceeEEEE
Q psy14540 159 SGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASD-NHSSNLRV 237 (291)
Q Consensus 159 ~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~-~~~~~l~v 237 (291)
...|.|.++..+|+|.|+|.|.|..|.. +..+.|.|
T Consensus 152 -------------------------------------------~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~V 188 (192)
T 2iep_A 152 -------------------------------------------SGSLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEV 188 (192)
T ss_dssp -------------------------------------------TSCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEE
T ss_pred -------------------------------------------CCcEEEecCChhhCEEEEEEEEcCCCcEEEEEEEEEE
Confidence 1246677777777788888888777655 55677777
Q ss_pred ecCC
Q psy14540 238 NVPP 241 (291)
Q Consensus 238 ~~~p 241 (291)
.++|
T Consensus 189 ~~pp 192 (192)
T 2iep_A 189 EVFA 192 (192)
T ss_dssp EC--
T ss_pred EeCC
Confidence 7654
No 64
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}
Probab=99.95 E-value=7.1e-26 Score=163.44 Aligned_cols=129 Identities=26% Similarity=0.373 Sum_probs=101.5
Q ss_pred CCcceeecceeeeec-CCcEEEEEEecCCCC--CeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEE
Q psy14540 2 HPQLIYKFIQQTLQP-GPPVSLKCIATGNPT--PHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQ 78 (291)
Q Consensus 2 ~p~~~~~~~~~~v~~-g~~v~l~C~~~~~~~--~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~ 78 (291)
||.|.. +....+.+ |+.+.|.|.+.+.+. +.+.|++++..+....... ....|.|.+++.+|+|.|+
T Consensus 3 ~P~i~~-~~~~~v~~~G~~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~~~~---------~~~~L~i~~~~~~d~G~Y~ 72 (190)
T 2wv3_A 3 EPRIVT-SEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNA---------SNMEYRINKPRAEDSGEYH 72 (190)
T ss_dssp CCEEEE-CCCEECCCSSSCEEEEEEEEECSSCEEEEEEEETTEECTTCCBCC---------SEEEEEESSCCGGGCEEEE
T ss_pred CCcccc-cceEEEccCCceEEEEEEeccCCCCceEEEEEECCEECcccceEe---------ccEEEEEecCCcccCEEEE
Confidence 678776 44456666 999999999988765 7899999999887433221 2367999999999999999
Q ss_pred EEEeCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeE--CCEecc
Q psy14540 79 CTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLK--NGLPIL 149 (291)
Q Consensus 79 C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~--~~~~~~ 149 (291)
|.+.+. +.....+.|.|...|. ....+....+.+|+.+.|.|.+ .+.|.+.+.|++ ++..+.
T Consensus 73 C~~~n~-~~~~~~~~l~V~~~p~-------~~~~~~~~~~~~g~~v~l~C~~-~g~p~p~i~W~~~~~g~~~~ 136 (190)
T 2wv3_A 73 CVYHFV-SAPKANATIEVKAAPD-------ITGHKRSENKNEGQDAMMYCKS-VGYPHPEWMWRKKENGVFEE 136 (190)
T ss_dssp EEEEET-TEEEEEEEEEEECCCE-------EEEECSEEEEETTSCEEEEEEE-ECSSCCEEEEEEEETTEEEE
T ss_pred EEEEeC-CcccccEEEEEecCCc-------ccccCCcceeeCCCcEEEEEEe-CccCCCceEEEEcCCCceee
Confidence 999988 7788888888887552 1122345678899999999999 689999999999 676653
No 65
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}
Probab=99.95 E-value=1.8e-26 Score=177.68 Aligned_cols=216 Identities=13% Similarity=0.187 Sum_probs=138.5
Q ss_pred CcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEe
Q psy14540 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTAT 82 (291)
Q Consensus 3 p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~ 82 (291)
|.|........+.+|++++|.|.+.+. +.|++++..+.. ... ....+.....|.|.+++.+|+|.|+|.+.
T Consensus 1 P~i~~~~~~~~v~~G~~v~L~C~~~~~----v~W~~~~~~~~~-~~~----~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~ 71 (289)
T 3mjg_X 1 LVVTPPGPELVLNVSSTFVLTCSGSAP----VVWERMSQEPPQ-EMA----KAQDGTFSSVLTLTNLTGLDTGEYFCTHN 71 (289)
T ss_dssp CCBCSSCSEEECCTTCCEEEEEEESSC----CEEEBTTBCCSE-EEE----ECTTSCEEEEEEECSCCGGGCEEEEEECC
T ss_pred CeecCCCCeEEEeCCCcEEEEEeccce----EEEECCCCCccc-cee----ccCCCceeEEEEEccCChhhCEEEEEEEc
Confidence 667777777889999999999999864 999999987641 111 11122234789999999999999999999
Q ss_pred CCCCc-eeeeeeEEEEcC-CCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccC
Q psy14540 83 NRVGS-QTHSADMRVYDA-PGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSG 160 (291)
Q Consensus 83 ~~~~~-~~~~~~l~v~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~ 160 (291)
+..|. ......+.|... +..+ ............+.+|+.+.|.|.+. .|.+.+.|++++......... . .
T Consensus 72 n~~g~~~~~~~~~~v~v~~p~~~--~~~~~~~~~~~~v~~G~~v~l~C~~~--~p~~~v~w~~~~~~~~~~~~~--~--~ 143 (289)
T 3mjg_X 72 DSRGLETDERKRLYIFVPDPTVG--FLPNDAEELFIFLTEITEITIPCRVT--DPQLVVTLHEKKGDVALPVPY--D--H 143 (289)
T ss_dssp C------CCCEEEEEECCCTTCC--BCCCCHHHHEEEESSCCCEEECCCBS--CTTSCEEEEESSCCSCCCCCE--E--T
T ss_pred ccCCCCcCcEEeEEEEEECCCcC--cccCCCCcceEEeecCCeEEEEeEcC--CCCceEEEEeCCCCCccceee--c--C
Confidence 87765 223334444433 2111 10000001115688999999999994 677889998865222111000 0 0
Q ss_pred CceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCC-ccCCceeEEEEec
Q psy14540 161 EYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTV-ASDNHSSNLRVNV 239 (291)
Q Consensus 161 ~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~-~~~~~~~~l~v~~ 239 (291)
. .. + +...|+|.|+|.|.|.. ...+..+.|.|..
T Consensus 144 --------------~--------------------------~~-~----~~~~d~G~Y~C~a~n~~~~~~s~~~~l~v~~ 178 (289)
T 3mjg_X 144 --------------Q--------------------------RG-F----SGIFEDRSYICKTTIGDREVDSDAYYVYRLQ 178 (289)
T ss_dssp --------------T--------------------------TE-E----EECCCSSEEEEEEEETTEEEECCCEEEEECC
T ss_pred --------------C--------------------------cC-e----eeeccCcEEEEEEEeCCceeeeeeEEEEecC
Confidence 0 00 0 02457888888888665 3344555677665
Q ss_pred --CCCCCCCCccc-ccCCceEEEEEEeecCCCCceEEEEECCEEc
Q psy14540 240 --PPHIGPFTFGE-LMEGVRTQVACVVQSGDLPLSLQWYKNGLAI 281 (291)
Q Consensus 240 --~p~~~~~~~~~-~~~g~~v~l~C~~~~~~p~~~v~W~~~~~~l 281 (291)
+|.+...+... +.+|+.++|.|.+ .+.|.+.|.|+++++..
T Consensus 179 ~~~p~i~~~~~~~~v~~G~~v~L~C~~-~g~p~p~v~W~~~~~~~ 222 (289)
T 3mjg_X 179 VSSINVSVNAVQTVVRQGENITLMCIV-IGNEVVNFEWTYPRKES 222 (289)
T ss_dssp CCCCCCEEEESCSEEETTSCEEEEEEE-ESCSSBEEEEECTTSSS
T ss_pred CCCCCcEEeCCcceeEcCCCEEEEEEE-CCCCCcceEEEcCCccC
Confidence 56655554434 8999999999999 88999999999877654
No 66
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4
Probab=99.95 E-value=1.9e-25 Score=160.09 Aligned_cols=168 Identities=23% Similarity=0.340 Sum_probs=118.9
Q ss_pred CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEE
Q psy14540 2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTA 81 (291)
Q Consensus 2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~ 81 (291)
+|.|...|....+.+|+++.|.|.+.+.|.+.+.|++++..+....... .........+.|.|.+++..|+|.|+|.+
T Consensus 2 ~~~~~~~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~--~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~ 79 (182)
T 1rhf_A 2 GLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLY--IPVSEQHWIGFLSLKSVERSDAGRYWCQV 79 (182)
T ss_dssp -----CCCEEEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSSEEEE--EEEETTEEEEEEEESSCCGGGCEEEEEEE
T ss_pred CCEEEeCCcceEEeCCCcEEEEEEEeCCCCCeEEEEECCeecCCCCceE--EEecCCCceEEEEEeecCcccCeEEEEEE
Confidence 6889999999999999999999999988888999999999887432111 11112233578999999999999999999
Q ss_pred eCCCCc-eeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCc-eeEEeECCEeccCCCceEEecc
Q psy14540 82 TNRVGS-QTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPL-TISWLKNGLPILSDAEITIRSS 159 (291)
Q Consensus 82 ~~~~~~-~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~~~~~~~~~~~~~~~~~ 159 (291)
.+..+. ....+.|.|..+|. ....+....+.+|+.+.|.|.+ .+.|.+ .+.|++++..+.....
T Consensus 80 ~~~~~~~~~~~~~l~V~~~p~-------~~~~~~~~~~~~g~~~~l~C~~-~g~p~p~~v~W~~~~~~~~~~~~------ 145 (182)
T 1rhf_A 80 EDGGETEISQPVWLTVEGVPF-------FTVEPKDLAVPPNAPFQLSCEA-VGPPEPVTIVWWRGTTKIGGPAP------ 145 (182)
T ss_dssp SSCTTCEECCCEEEEEECSCE-------EEECCCCEEECTTCCEEEEEEE-ECSSSCCEEEEEETTEECSCSEE------
T ss_pred EcCCCcEEEEEEEEEEecCCe-------EEecCcceEecCCCEEEEEeEe-cCCCCCCEEEEEcCCeECCCCCC------
Confidence 987654 45677888876541 2223445778899999999999 688888 9999999988754321
Q ss_pred CCceEEEEEeeCCCCCceeEEEEEEecCCC
Q psy14540 160 GEYTSSLSIATLSTGHSGNYTCVASNTVAS 189 (291)
Q Consensus 160 ~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 189 (291)
....|.|..+ +|.|.|+|.|.|..|.
T Consensus 146 --~~~~L~i~~~--~d~G~Y~C~a~N~~g~ 171 (182)
T 1rhf_A 146 --SPSVLNVTGV--TQSTMFSCEAHNLKGL 171 (182)
T ss_dssp --SSEEEEECCC--SSCEEEEEEEEETTEE
T ss_pred --CceEEEEecc--ccCeEEEEEEECCCCC
Confidence 1334555544 3555555555555543
No 67
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R
Probab=99.95 E-value=2.1e-27 Score=206.30 Aligned_cols=257 Identities=20% Similarity=0.299 Sum_probs=111.1
Q ss_pred cceeeeecC--CcEEEEEEecCCCCCeeEEEEC--CeecC-CCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeC
Q psy14540 9 FIQQTLQPG--PPVSLKCIATGNPTPHISWKLD--GYPLA-GDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATN 83 (291)
Q Consensus 9 ~~~~~v~~g--~~v~l~C~~~~~~~~~v~W~~~--~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~ 83 (291)
+....+.+| +.++|.|.+.+ |.+.+.|+++ +..+. ...... ... ...|.|.+++.+|+|.|+|.+.+
T Consensus 133 ~~~~~v~~G~~~~v~L~C~~~~-p~~~v~w~~~~~~~~~~~~~~~~~----~~~---~~~l~i~~~~~~d~G~Y~C~~~~ 204 (772)
T 3v2a_R 133 HGVVYITENKNKTVVIPCLGSI-SNLNVSLCARYPEKRFVPDGNRIS----WDS---KKGFTIPSYMISYAGMVFCEAKI 204 (772)
T ss_dssp EEEEEEESSCCCEEEECCCCSC-SSCCEEEEEETTTEEECCCSSSCE----EET---TTEEEEEGGGTTTCSEEEEEEEE
T ss_pred ceeEEEecCCCCeEEEEccCCC-CCcEEEEEecCCCccccCCCceee----cCC---CCCeEecCCChhhCeEEEEEEEE
Confidence 455678889 88999999975 6789999997 55443 221110 011 13488999999999999999986
Q ss_pred CCCceee-eeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCC-CCCceeEEeECCEeccCCCceEEe----
Q psy14540 84 RVGSQTH-SADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKG-DPPLTISWLKNGLPILSDAEITIR---- 157 (291)
Q Consensus 84 ~~~~~~~-~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~p~~~~~W~~~~~~~~~~~~~~~~---- 157 (291)
....... ...+.+...+ .............+.+|+.++|.|.+... .+.+.+.|++++..+.........
T Consensus 205 ~~~~~~s~~~~~~v~~~~----~~~v~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~ 280 (772)
T 3v2a_R 205 NDESYQSIMYIVVVVGYR----IYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQ 280 (772)
T ss_dssp TTEEEECCEEEEEEECCC----EEEEEEECCSCEEEETTCCEEEEEEEEECTTCCCEEEEECC--------CEEEEC---
T ss_pred CCceEEEEEEEEEEecCc----cceeeeCCCCceEEecCCcEEEEEEEecCCCCceeEEEecCCccCCCceeeecccccc
Confidence 4332221 1233333221 11122233344678899999999999532 556789999998876543322211
Q ss_pred ---ccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEec----------------------------------
Q psy14540 158 ---SSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNE---------------------------------- 200 (291)
Q Consensus 158 ---~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~---------------------------------- 200 (291)
........|.|..+..+|+|.|+|.+.|..+.......+.+..
T Consensus 281 ~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~ 360 (772)
T 3v2a_R 281 SGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVEATVGERVRIPAKYLGYPPP 360 (772)
T ss_dssp --CCCEEEEEEEEESSCCSTTCSEEEEEEECSSCEEEEEEEEEEECCCC-------------------------------
T ss_pred ccccceEEEEEEEECcCCcCCCeEEEEEEEcCCcceeEEEEEEEeCCCeeEeccCCCCcEEEcCCCcEEEEEEEeeeCCC
Confidence 1112356899999999999999999998776544333333110
Q ss_pred ------------------cceEEEEeeeecCCCeeEEEEeeeCCccC--CceeEEEEecCCCCCCCCc----ccccCCce
Q psy14540 201 ------------------YTSSLSIATLSTGHSGNYTCVASNTVASD--NHSSNLRVNVPPHIGPFTF----GELMEGVR 256 (291)
Q Consensus 201 ------------------~~~~l~i~~~~~~~~g~y~C~~~~~~~~~--~~~~~l~v~~~p~~~~~~~----~~~~~g~~ 256 (291)
....|.|.++..+|+|.|+|.|.|..+.. +..+.|.|..+|.+..... ..+.+|+.
T Consensus 361 ~v~W~~~g~~l~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~~~l~v~~~P~~~~~~~~~~~~~~~~g~~ 440 (772)
T 3v2a_R 361 EIKWYKNGIPLESNHTIKAGHVLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTT 440 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eEEEEECCEeCCCCceEccceeEEEecCChhcCceEEEEEEECCcCeEEEEEEEEEEecCCcccccccCCCccccCCCCc
Confidence 02788899999999999999999988654 5567778888887754321 23789999
Q ss_pred EEEEEEeecCCCCce-EEEEECC
Q psy14540 257 TQVACVVQSGDLPLS-LQWYKNG 278 (291)
Q Consensus 257 v~l~C~~~~~~p~~~-v~W~~~~ 278 (291)
++|.|.+ .+.|.|. +.|++++
T Consensus 441 ~~l~C~~-~g~p~p~~v~W~~~~ 462 (772)
T 3v2a_R 441 QTLTCTV-YAIPPPHHIHWYWQL 462 (772)
T ss_dssp -----------------------
T ss_pred EEEEeEe-ccCCCCcEEEEEEcC
Confidence 9999999 8888886 9999974
No 68
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*
Probab=99.95 E-value=7.8e-27 Score=172.08 Aligned_cols=185 Identities=25% Similarity=0.476 Sum_probs=125.3
Q ss_pred CCCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEE
Q psy14540 1 SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCT 80 (291)
Q Consensus 1 s~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~ 80 (291)
.||.|+..|....+.+|+++.|.|.+.+.|.+.+.|++++..+..............+.....|.|.+++..|+|.|+|.
T Consensus 8 ~~P~i~~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~ 87 (217)
T 2vr9_A 8 QSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWCV 87 (217)
T ss_dssp CCCEEEECCCCEEECTTSCEEECCEEECSSCCEEEEEETTEECCCSSSSSSEEECTTSCEEESSCCBSSSCBCCEEEEEE
T ss_pred CCCEEecCCCceEEeCCCcEEEEEEcCCCCCCeEEEEECCcCccCCCccceeEEecCCceEEEEEeccCCcccCceEEEE
Confidence 47999999999999999999999999988888999999999887331111111222334445567899999999999999
Q ss_pred EeCCCCce-eeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEecc
Q psy14540 81 ATNRVGSQ-THSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSS 159 (291)
Q Consensus 81 ~~~~~~~~-~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~ 159 (291)
+.+..+.. .....+.|...+.. ....+....+.+|+.+.|.|.+..+.|.+.+.|++++..+...........
T Consensus 88 ~~n~~g~~~~~~~~l~v~~~~~~------~~~~~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~ 161 (217)
T 2vr9_A 88 AKNRVGQAVSRHASLQIAVLRDD------FRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGAS 161 (217)
T ss_dssp EEETTEEEECCCEEEEECEECCS------CSBCCCCEEECTTSCEEECCBCCCEESCCEEEEEETTEEECCCCCC---CC
T ss_pred EecCCCccccccceEEEEEeCCC------cEECCCccEEcCCCeEEEEEECCCCCCCCeEEEEECCcCCCcccccccccC
Confidence 99876654 33556666543211 112234567889999999999856889999999999998874322211111
Q ss_pred CC----ceEEEEEeeCCCCCceeEEEEEEecCCCCC
Q psy14540 160 GE----YTSSLSIATLSTGHSGNYTCVASNTVASDN 191 (291)
Q Consensus 160 ~~----~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~ 191 (291)
.. ....|.|..+..+|.|.|+|.|.|..|...
T Consensus 162 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~ 197 (217)
T 2vr9_A 162 SRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRE 197 (217)
T ss_dssp CSEEEETTTEEEESSCCSTTCEEEEEEEEETTEEEE
T ss_pred CcEEecCCCcEEEeeCCHHHCeEEEEEEEcccceec
Confidence 00 112466666666666666666666555433
No 69
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A
Probab=99.94 E-value=3.9e-27 Score=173.08 Aligned_cols=197 Identities=26% Similarity=0.440 Sum_probs=134.7
Q ss_pred CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeE--eceEEeeccc-eEEEEEEeecCCCCCeEEE
Q psy14540 2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFV--MGQYMSLHGD-VISHVNISSVRVEDSGIYQ 78 (291)
Q Consensus 2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~--~~~~~~~~~~-~~~~l~i~~~~~~d~G~y~ 78 (291)
||.|...|....+.+|+.+.|.|.+.+.|.+.+.|++++..+...... ........+. ....|.|.+++..|+|.|+
T Consensus 9 pp~i~~~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~ 88 (212)
T 2v9r_A 9 PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYV 88 (212)
T ss_dssp EEEEEECCCCEEECTTCCEEECCEEEEESCCEEEEEETTEECCCTTTCTTCSEEECTTSCEEESSCCCCSSCCCSCEEEE
T ss_pred CcceecCCCceEEeCCCcEEEEEEcCCCCCCEEEEEECCEEeeccccccccceEEecCCcEEEEEEEecCCCcccCeEEE
Confidence 788999999999999999999999988888899999999887622110 0011111111 1233556788999999999
Q ss_pred EEEeCCCCce-eeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEe
Q psy14540 79 CTATNRVGSQ-THSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIR 157 (291)
Q Consensus 79 C~~~~~~~~~-~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~ 157 (291)
|.+.+..+.. ...+.+.|...+.. ....+....+.+|+.+.|.|.+..+.|.+.+.|++++..+.........
T Consensus 89 C~~~n~~g~~~~~~~~l~V~~~~~~------~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~l~~~~~~~~~ 162 (212)
T 2v9r_A 89 CVARNYLGEAVSHDASLEVAILRDD------FRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITI 162 (212)
T ss_dssp EEEEETTEEEECCCEEEEECEECSS------CSBCCCCEEEETTSCEEEECBCCCEESCCEEEEEETTEEECTTSTTEEE
T ss_pred EEEECCCCceeecceEEEEEecccc------ceeCCCceEecCCCcEEEEEecCCCCCCCEEEEEECCccCCCCcceEEc
Confidence 9999876654 44566666553311 1123345678899999999997568899999999999887543221100
Q ss_pred ccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccC-CceeEEE
Q psy14540 158 SSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASD-NHSSNLR 236 (291)
Q Consensus 158 ~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~-~~~~~l~ 236 (291)
....|.|.++..+|+|.|+|.|.|..|.. +..+.|.
T Consensus 163 -------------------------------------------~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~s~~~~l~ 199 (212)
T 2v9r_A 163 -------------------------------------------RGGKLMITYTRKSDAGKYVCVGTNMVGERESEVAELT 199 (212)
T ss_dssp -------------------------------------------ETTEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEE
T ss_pred -------------------------------------------cCCeEEEeeCCHhhCeeEEEEEecccCceecceEEEE
Confidence 02357788888888999999999988764 4458899
Q ss_pred EecCCCCCCCC
Q psy14540 237 VNVPPHIGPFT 247 (291)
Q Consensus 237 v~~~p~~~~~~ 247 (291)
|..+|.+...+
T Consensus 200 V~~~P~~~~~P 210 (212)
T 2v9r_A 200 VLERPSFVKAA 210 (212)
T ss_dssp EEC--------
T ss_pred EEeCchHhhhc
Confidence 99888876544
No 70
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Probab=99.94 E-value=3.1e-25 Score=170.26 Aligned_cols=174 Identities=26% Similarity=0.512 Sum_probs=124.1
Q ss_pred CCcceeec-ceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCC-eeEeceEEeeccceEEEEEEeecCCCCCeEEEE
Q psy14540 2 HPQLIYKF-IQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGD-RFVMGQYMSLHGDVISHVNISSVRVEDSGIYQC 79 (291)
Q Consensus 2 ~p~~~~~~-~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C 79 (291)
+|.+...+ ....+.+|+.+.|.|.+.+.|.+.+.|++++..+... .... ........|.|.+++..|+|.|+|
T Consensus 98 ~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~-----~~~~~~~~L~i~~~~~~d~G~Y~C 172 (284)
T 2rik_A 98 PPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRM-----SFVESVAVLEMYNLSVEDSGDYTC 172 (284)
T ss_dssp CCEEEECCCSEEEEETTCCEEEEEEEESSSCCEEEEEETTEECCCSSSEEE-----EEETTEEEEEECSCCGGGCEEEEE
T ss_pred CCcccccCCCceEecCCceEEEEEEEeeeCCCEEEEEECCEECcCCCcEEE-----EEcCCEEEEEECCCCcccCEEEEE
Confidence 45555443 3456899999999999998899999999999988732 2222 112234679999999999999999
Q ss_pred EEeCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEecc
Q psy14540 80 TATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSS 159 (291)
Q Consensus 80 ~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~ 159 (291)
.+.+..+.....+.|.|..+|... ..+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+....+......
T Consensus 173 ~a~n~~g~~~~~~~l~V~~~p~~~-------~~~~~~~~~~g~~v~l~C~~-~g~p~~~v~W~~~~~~~~~~~~~~~~~~ 244 (284)
T 2rik_A 173 EAHNAAGSASSSTSLKVKEPPVFR-------KKPHPVETLKGADVHLECEL-QGTPPFQVSWHKDKRELRSGKKYKIMSE 244 (284)
T ss_dssp EEECSSCEEEEEEEEEEECCCBCC-------SCCCCEEECTTCCEEEEEEC-BSSSCCEEEEEETTEEECBTTTEEEEEE
T ss_pred EEEcCCCceeEEEEEEEecCCcce-------eCCCcceecCCCeEEEEEEE-EecCCCEEEEEECCEECcCCCCEEEEEc
Confidence 999998888888889998765321 23345678899999999999 6889999999999998876655544322
Q ss_pred CCceEEEEEeeCCCCCceeEEEEEEecCCC
Q psy14540 160 GEYTSSLSIATLSTGHSGNYTCVASNTVAS 189 (291)
Q Consensus 160 ~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 189 (291)
+ ....|.|..+..+|.|.|+|.|.|..|.
T Consensus 245 ~-~~~~L~i~~v~~~d~G~Y~C~a~N~~G~ 273 (284)
T 2rik_A 245 N-FLTSIHILNVDSADIGEYQCKASNDVGS 273 (284)
T ss_dssp T-TEEEEEECSCCGGGCEEEEEEEEETTEE
T ss_pred C-CEEEEEEcCCCcccCEEEEEEEEeCCCc
Confidence 1 1234444444444444444444444443
No 71
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*
Probab=99.94 E-value=4.3e-26 Score=166.03 Aligned_cols=168 Identities=16% Similarity=0.208 Sum_probs=126.5
Q ss_pred CCcceeecceeeeecCCcEEEEEEecCCCCCe-eEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEE
Q psy14540 2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPH-ISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCT 80 (291)
Q Consensus 2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~-v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~ 80 (291)
+|.|...|....+.+|++++|.|.+.+.+.+. +.|++++..+.... ..|.|.+++.+|+|.|+|.
T Consensus 7 ~p~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~~v~W~k~g~~l~~~~--------------~~L~i~~v~~~D~G~Y~C~ 72 (204)
T 3sgj_C 7 KAVVFLEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQA--------------SSYFIDAATVDDSGEYRCQ 72 (204)
T ss_dssp BCEEEEESCCSEEETTCCEEEEEECCSSSSCCCEEEEETTEEESCCS--------------SEEEESSCCGGGCEEEEEE
T ss_pred CCeEEEcCCCeEEECCCCEEEEEcCCCCCCCcEEEEEECCEEcccCc--------------cEEEEecccccCCEEEEEE
Confidence 57888888888999999999999999876655 99999998776332 4588999999999999999
Q ss_pred EeCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccC
Q psy14540 81 ATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSG 160 (291)
Q Consensus 81 ~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~ 160 (291)
+.+ +..+..+.|.|...+. ....+ ...+.+|+.++|.|.+..+.|.+.+.|+++|..+....
T Consensus 73 a~n--~~~s~~~~l~V~~~p~-------~~~~~-~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~~~~-------- 134 (204)
T 3sgj_C 73 TQL--STLSDPVQLEVHIGWL-------LLQAP-RWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKYFH-------- 134 (204)
T ss_dssp ETT--SBCCCCEEEEEECSSE-------EEECS-CSEEETTCCEEEEEEEGGGCCCEEEEEEETTEEEEEEE--------
T ss_pred eCC--CcccccEEEEEecCce-------EecCC-ceeEeCCCcEEEEEEecCCCCCceEEEEECCcEeeccc--------
Confidence 986 3455566777775431 11222 25677999999999996566778999999997742100
Q ss_pred CceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeC-CccCCceeEEEEec
Q psy14540 161 EYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNT-VASDNHSSNLRVNV 239 (291)
Q Consensus 161 ~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~-~~~~~~~~~l~v~~ 239 (291)
....|.|.++..+|+|.|+|.|.|. .+..+..+.|.|..
T Consensus 135 ----------------------------------------~~~~L~i~~v~~~D~G~Y~C~a~n~~~~~~s~~~~l~V~~ 174 (204)
T 3sgj_C 135 ----------------------------------------HNSDFYIPKATLKDSGSYFCRGLVGSKNVSSETVQITITQ 174 (204)
T ss_dssp ----------------------------------------ECCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred ----------------------------------------CCceEEECcCCcccCEEEEEEEEeCCCceecCcEEEEEeC
Confidence 0235777888888888888888884 46677788888876
Q ss_pred CC
Q psy14540 240 PP 241 (291)
Q Consensus 240 ~p 241 (291)
+|
T Consensus 175 ~~ 176 (204)
T 3sgj_C 175 GL 176 (204)
T ss_dssp --
T ss_pred cC
Confidence 54
No 72
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E
Probab=99.94 E-value=1.6e-26 Score=183.63 Aligned_cols=200 Identities=14% Similarity=0.179 Sum_probs=148.0
Q ss_pred eeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCceeee
Q psy14540 12 QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQTHS 91 (291)
Q Consensus 12 ~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~ 91 (291)
..+.+|++++|.|.+.+.|.+.+.|++++..+. .....|.|.+++.+|+|.|+|.+.+..+.....
T Consensus 106 ~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~--------------~~~~~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~ 171 (363)
T 1wio_A 106 THLLQGQSLTLTLESPPGSSPSVQCRSPRGKNI--------------QGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFK 171 (363)
T ss_dssp SSEESBSCEEEEEECCTTCCCCEEEECSSSCEE--------------EESSEEEECSBCGGGCEECEEEEEETTEEEEEC
T ss_pred eEEecCCCEEEEEEcCCCCCCeEEEEcCCCccc--------------ccceEEEEeeCChhcCCEEEEEEecCCCeEEEE
Confidence 468899999999999888899999999875431 012458999999999999999999876666666
Q ss_pred eeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCC-----CCCceeEEeECCEeccC--------CCceEEec
Q psy14540 92 ADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKG-----DPPLTISWLKNGLPILS--------DAEITIRS 158 (291)
Q Consensus 92 ~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~-----~p~~~~~W~~~~~~~~~--------~~~~~~~~ 158 (291)
+.+.|...+.. +....+.+|+.+.|.|.+ .+ .|.+.+.|+++|..+.. ........
T Consensus 172 ~~l~v~~~p~~----------~~~~~~~~G~~v~l~C~~-~~~~~~~~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~~ 240 (363)
T 1wio_A 172 IDIVVLAFQKA----------SSIVYKKEGEQVEFSFPL-AFTVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKR 240 (363)
T ss_dssp CEECEECCSCS----------EEEEEEETBCCEEEECCC-CCCCCSSCEEEEEEEEESSCCCCCCEEEEEECSSCEEEEE
T ss_pred EEEEEecCCCC----------CCceEEecCCEEEEEEEE-ecccccCCCceeEEEecCCCCccceEEEEEecCCeeeccc
Confidence 77777755421 134667899999999988 45 77899999999988765 33333321
Q ss_pred ---------cCCceEEEEEeeCCCCCceeEEEEEEec--CCCCCCceEEEEec---------------------------
Q psy14540 159 ---------SGEYTSSLSIATLSTGHSGNYTCVASNT--VASDNHSSNLRVNE--------------------------- 200 (291)
Q Consensus 159 ---------~~~~~~~l~i~~~~~~d~g~y~C~~~~~--~~~~~~~~~~~~~~--------------------------- 200 (291)
...+...|.|.++..+|.|.|+|.|.|. .|.....+.+.+..
T Consensus 241 ~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~g~~~~~~~l~V~~v~g~~~~l~C~~~g~p~p~~~i~W~~~ 320 (363)
T 1wio_A 241 VTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQEVNLVVMRATQLQKNLTCEVWGPTSPKLMLSLKLE 320 (363)
T ss_dssp EECSSCCBCCSSSSCEEEESSBCGGGCEEEEEEECBTTTTCCEEEEEEEEEEEECCCSSSEEEEEESSCCTTCCEEEECS
T ss_pred cccchhhhcccCCceEEEEccCCcCcCcEEEEEEEEhhhcCeEEEEEeEEEEEecCCCeeEEEEEccccCCCccEEEEeC
Confidence 1222448999999999999999999999 77655444443110
Q ss_pred -----cceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEE
Q psy14540 201 -----YTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRV 237 (291)
Q Consensus 201 -----~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v 237 (291)
....|.|..+..+|+|.|+|.|.+. +....+..|.|
T Consensus 321 ~~~~~~~~~l~i~~v~~~d~G~Y~C~a~~~-~~~~~~~~~~V 361 (363)
T 1wio_A 321 NKEAKVSKREKAVWVLNPEAGMWQCLLSDS-GQVLLESNIKV 361 (363)
T ss_dssp SSSCSEEESSSEEEESSCCSEEEEEEECSS-SSCCEEEEEEE
T ss_pred CCceeeeeeeeeeeeccccceeEEEEEecC-CeEEEecceEe
Confidence 0455778899999999999999964 34444445544
No 73
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A
Probab=99.94 E-value=7e-26 Score=163.59 Aligned_cols=171 Identities=20% Similarity=0.359 Sum_probs=123.9
Q ss_pred CCcceeecceeeeecCCcEEEEEEecCCC-CCeeEEEE-CCeecCC--CeeEeceEEeeccceEEEEEEeecCCCCCeEE
Q psy14540 2 HPQLIYKFIQQTLQPGPPVSLKCIATGNP-TPHISWKL-DGYPLAG--DRFVMGQYMSLHGDVISHVNISSVRVEDSGIY 77 (291)
Q Consensus 2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~-~~~v~W~~-~~~~~~~--~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y 77 (291)
|+.|...|.+..+.+|+.++|.|.+.+.+ .+.+.|++ ++..+.. .++... ........|.|.+++.+|+|.|
T Consensus 2 p~~v~~~p~~~~v~~G~~v~l~C~~~~~~~~~~v~W~~~~g~~~~~~~~~~~~~----~~~~~~~~L~i~~~~~~d~G~Y 77 (191)
T 1epf_A 2 VLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVV----WNDDDSSTLTIYNANIDDAGIY 77 (191)
T ss_dssp -CCEEEESSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEE----EEETTEEEEEECSCCGGGCEEE
T ss_pred ceEEEecCCCcEEcCCCCEEEEEECCCCCCCceEEEEeCCCccccCCCCeEEEE----ECCCCceEEEEccCCcccCEEE
Confidence 67889999999999999999999999865 78999999 8877662 222221 1123446799999999999999
Q ss_pred EEEEeCCC-CceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCC--ce
Q psy14540 78 QCTATNRV-GSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDA--EI 154 (291)
Q Consensus 78 ~C~~~~~~-~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~--~~ 154 (291)
+|.+.+.. +.....+.+.|..++. ....+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+.... +.
T Consensus 78 ~C~~~~~~~~~~~~~~~l~v~~~p~-------~~~~~~~~~~~~g~~~~l~C~~-~g~p~~~v~W~~~~~~~~~~~~~~~ 149 (191)
T 1epf_A 78 KCVVTAEDGTQSEATVNVKIFQKLM-------FKNAPTPQEFKEGEDAVIVCDV-VSSLPPTIIWKHKGRDVILKKDVRF 149 (191)
T ss_dssp EEEEEETTTEEEEEEEEEEEECCSE-------EEECCSSEECCTTSCEEECCEE-ECSSCCEEEEEETTEEGGGGCCTTE
T ss_pred EEEEEcCCCcceEEEEEEEeecCce-------EecCCCcEeecCCCeEEEEEEE-CCCCCCEEEEEECCEEeeccCCceE
Confidence 99999876 4556667777765441 2233445678899999999999 589999999999999886432 22
Q ss_pred EEeccCCceEEEEEeeCCCCCceeEEEEEEecCC
Q psy14540 155 TIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVA 188 (291)
Q Consensus 155 ~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~ 188 (291)
..... ..|.|..+..+|.|.|+|.|.|..+
T Consensus 150 ~~~~~----~~L~i~~~~~~d~G~Y~C~a~n~~~ 179 (191)
T 1epf_A 150 IVLSN----NYLQIRGIKKTDEGTYRCEGRILAR 179 (191)
T ss_dssp EECTT----SCEEETTCCGGGCEEEEEEEEEGGG
T ss_pred EEecC----CeEEECCCChhhCEEEEEEEEEecc
Confidence 22211 2466666666666666666666553
No 74
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}
Probab=99.94 E-value=1.2e-25 Score=163.78 Aligned_cols=178 Identities=16% Similarity=0.191 Sum_probs=117.4
Q ss_pred CCcceeecceeeeecCCcEEEEEEecC-CCCCeeEEEECCeecC-CCeeEeceEEeeccceEEEEEEeecCCCCCeEEEE
Q psy14540 2 HPQLIYKFIQQTLQPGPPVSLKCIATG-NPTPHISWKLDGYPLA-GDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQC 79 (291)
Q Consensus 2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~-~~~~~v~W~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C 79 (291)
+|.|.. +....+.+|+.+.|.|.+.. .|.+.+.|++||..+. ..++.+. .....+..+|.|.+++.+|+|.|+|
T Consensus 3 ~p~~~~-~~~~~v~eg~~v~l~c~~~~~~P~p~i~W~kng~~l~~~~~~~~~---~~~~~g~~~L~I~~v~~~D~G~Y~C 78 (207)
T 3rbs_A 3 DPFTKS-ELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMH---IDRNTGIIEMFMEKLQDEDEGTYTF 78 (207)
T ss_dssp ---CCE-EEEEEECGGGCEEEEEECSCCCSCCEEEEEETTEEECSSSSCEEE---ECTTTCEEEEEESCCCGGGCEEEEE
T ss_pred CCeeec-CCceEEEeCCeEEEEEEEecCCCCCEEEEEECCEECccCCCEEEE---EeCCCCEEEEEECCCChhhCEEEEE
Confidence 466665 44678999999999999975 7899999999999987 3333321 1222456789999999999999999
Q ss_pred EEeCCCCceeeeeeEEEEcCC------------------CCCcccceeccCCcceeecCCCceEEEEEeeCCC-CCceeE
Q psy14540 80 TATNRVGSQTHSADMRVYDAP------------------GQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGD-PPLTIS 140 (291)
Q Consensus 80 ~~~~~~~~~~~~~~l~v~~~~------------------~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~-p~~~~~ 140 (291)
.+.| +.......+.+.... ..| ...... ...+.+|+.+.|.|.+ .|. |.+.+.
T Consensus 79 ~a~N--g~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P----~~~~~~-~~~v~~g~~v~l~C~v-~g~~P~p~i~ 150 (207)
T 3rbs_A 79 QLQD--GKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGP----HFVEYL-SWEVTGECNVLLKCKV-ANIKKETHIV 150 (207)
T ss_dssp EEEE--TTEEEEEEEEECTHHHHHHHHHHHHHHHHHHHHTSS----EEEEEE-EEEEETTTEEEEEEEE-ESCCTTCEEE
T ss_pred EEEC--CCeEEEEEEEEEccchhhhcccccccccccccCCCC----ceEecC-CcEEcCCCcEEEEEEE-eCCCCCCEEE
Confidence 9987 444433333221100 011 111111 2567899999999999 576 899999
Q ss_pred EeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCce
Q psy14540 141 WLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSS 194 (291)
Q Consensus 141 W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~ 194 (291)
|++++.++....+.. ...+...|.|.++..+|.|.|+|.|.|..|......
T Consensus 151 W~k~g~~l~~~~~~~---~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~ 201 (207)
T 3rbs_A 151 WYKDEREISVDEKHD---FKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRL 201 (207)
T ss_dssp EEETTEEECCCCCCC---CSSEEEEEEETTCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred EEECCEECCCCCceE---cCCCEEEEEECCCCcccCEEEEEEEEcCCCEEEEEE
Confidence 999999986654321 122234566666666666666666666665444333
No 75
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}
Probab=99.94 E-value=3.8e-26 Score=164.70 Aligned_cols=182 Identities=23% Similarity=0.448 Sum_probs=124.4
Q ss_pred CCCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCC---CeeEeceEEeeccceEEEEEEeecCCCCCeEE
Q psy14540 1 SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAG---DRFVMGQYMSLHGDVISHVNISSVRVEDSGIY 77 (291)
Q Consensus 1 s~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y 77 (291)
|+|.|...|.+..+.+|+.+.|.|.+.+.|.+.+.|++++..+.. .++.. . .. .+|.|.+++.+|+|.|
T Consensus 1 s~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~-----~-~~--~~L~i~~~~~~d~G~Y 72 (189)
T 2v5t_A 1 SMLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAM-----L-AN--NNLQILNINKSDEGIY 72 (189)
T ss_dssp CCCEEEECCSSEEEETTSCEEECCEEECSSCCEEEEEC-----CBCCCTTEEE-----C-TT--SCEEETTCCGGGCEEE
T ss_pred CCceeeccCCCEEEeCCCcEEEEEEEcCCCCCEEEEEECCccceeccCCeEEE-----e-cC--CCEEEeeCCHhHCcEE
Confidence 689999999999999999999999999888889999999877651 22221 1 11 2489999999999999
Q ss_pred EEEEeCCCCce--eeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceE
Q psy14540 78 QCTATNRVGSQ--THSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEIT 155 (291)
Q Consensus 78 ~C~~~~~~~~~--~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~ 155 (291)
+|.+.+..+.. ...+.+.+..++. ...........+.+|+.+.|.|.+ .+.|.+.+.|++++..+....+..
T Consensus 73 ~C~~~~~~~~~~~~~~~~l~v~~~p~-----~~~~~~~~~~~~~~g~~v~l~C~~-~g~p~~~v~W~~~g~~~~~~~~~~ 146 (189)
T 2v5t_A 73 RCEGRVEARGEIDFRDIIVIVNVPPA-----ISMPQKSFNATAERGEEMTFSCRA-SGSPEPAISWFRNGKLIEENEKYI 146 (189)
T ss_dssp EEEEEETTTTEEEEEEEEEEEEEEEE-----EECSCCEEEEETTSCCCEEEECEE-EEESCCEEEEEETTEECCCSSSEE
T ss_pred EEEEEEcCCCceEEEEEEEEecCCCC-----cccccccccccccCCCcEEEEEEE-ccCCCCeEEEEECCEECcCCCcEE
Confidence 99998766443 2344555554331 111111224567789999999999 678999999999999886654433
Q ss_pred EeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEE
Q psy14540 156 IRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNL 235 (291)
Q Consensus 156 ~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l 235 (291)
.... ...|.|.++..+|+|.|+|.|.|..|.....+.|
T Consensus 147 ~~~~------------------------------------------~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 184 (189)
T 2v5t_A 147 LKGS------------------------------------------NTELTVRNIINSDGGPYVCRATNKAGEDEKQAFL 184 (189)
T ss_dssp EETT------------------------------------------TTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred EecC------------------------------------------CCEEEEcCCChhhCeeEEEEEEeCCCceeEEEEE
Confidence 2211 2346666666666777777777766666666666
Q ss_pred EEe
Q psy14540 236 RVN 238 (291)
Q Consensus 236 ~v~ 238 (291)
.|.
T Consensus 185 ~V~ 187 (189)
T 2v5t_A 185 QVF 187 (189)
T ss_dssp EEE
T ss_pred EEE
Confidence 554
No 76
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane, phosphorylation, immunoglobulin domain, membrane, glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB: 2xy1_A*
Probab=99.94 E-value=5.5e-26 Score=164.28 Aligned_cols=186 Identities=23% Similarity=0.469 Sum_probs=128.9
Q ss_pred CCCcceeecc--eeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCC-eeEeceEEeeccceEEEEEEeecCCCCCeEE
Q psy14540 1 SHPQLIYKFI--QQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGD-RFVMGQYMSLHGDVISHVNISSVRVEDSGIY 77 (291)
Q Consensus 1 s~p~~~~~~~--~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y 77 (291)
|||.|...+. ...+.+|+.+.|.|.+.+.|.+.+.|++++..+... ++.. ... ...|.|.+++..|+|.|
T Consensus 1 spP~i~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~-----~~~--~~~L~i~~~~~~d~G~Y 73 (192)
T 2va4_A 1 SMPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYIL-----KGS--NTELTVRNIINSDGGPY 73 (192)
T ss_dssp CCCEEECSCCEEEEETTSCCCEEEECEEECSSCCEEEEEETTEECCCSSSEEE-----ETT--TTEEEECSCCGGGCEEE
T ss_pred CCCcccCCCCCcEEEEecCCCEEEEEeeccCCCCeEEEEECCeEcCCCccEEE-----eCC--eeEEEEecCChhcCcEE
Confidence 6898887554 578899999999999998888899999999988732 2221 111 13599999999999999
Q ss_pred EEEEeCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeEC--CEeccCCCceE
Q psy14540 78 QCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKN--GLPILSDAEIT 155 (291)
Q Consensus 78 ~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~--~~~~~~~~~~~ 155 (291)
+|.+.+..+.....+.|.|...|.. . . .....+.+|+.+.|.|.+ .+.|.+.+.|+++ +..+.....
T Consensus 74 ~C~~~~~~~~~~~~~~l~V~~~p~~------~-~-~~~~~~~~g~~v~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~-- 142 (192)
T 2va4_A 74 VCRATNKAGEDEKQAFLQVFVQPHI------I-Q-LKNETTYENGQVTLVCDA-EGEPIPEITWKRAVDGFTFTEGDK-- 142 (192)
T ss_dssp EEEEEETTEEEEEEEEEEEEEEEEE------E-E-ECCEEECTTSEEEEEEEE-EEESCCEEEEEETTTTEEECTTCB--
T ss_pred EEEEEccccccceEEEEEEEccCcc------c-c-cCcceEEeCCeEEEEEEe-cCCCCCcEEEEeCCCCceeecccc--
Confidence 9999988877777778888664411 1 1 123456679999999998 6889999999998 444432110
Q ss_pred EeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEE
Q psy14540 156 IRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNL 235 (291)
Q Consensus 156 ~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l 235 (291)
...+.|. +........|.|.++..+|+|.|+|.|.|..|....++.|
T Consensus 143 ------------------~~~~~~~---------------~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 189 (192)
T 2va4_A 143 ------------------SLDGRIE---------------VKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYL 189 (192)
T ss_dssp ------------------CTTSCEE---------------EEEETTEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEE
T ss_pred ------------------ccCCcEE---------------EeeccCceEEEEecCCcccCEEEEEEEEecCCceEEEEEE
Confidence 0001111 1111223456667777777777777777777666666666
Q ss_pred EE
Q psy14540 236 RV 237 (291)
Q Consensus 236 ~v 237 (291)
.|
T Consensus 190 ~V 191 (192)
T 2va4_A 190 DI 191 (192)
T ss_dssp EE
T ss_pred Ee
Confidence 65
No 77
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}
Probab=99.94 E-value=2.6e-25 Score=163.92 Aligned_cols=178 Identities=22% Similarity=0.393 Sum_probs=130.7
Q ss_pred CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEE
Q psy14540 2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTA 81 (291)
Q Consensus 2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~ 81 (291)
.+.|...|....+.+|+.+.|.|.+.+.|.+.+.|++++..+.... ...|.|.+++..|+|.|+|.+
T Consensus 18 ~~~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~-------------~~~L~i~~v~~~d~G~Y~C~~ 84 (218)
T 3k0w_A 18 GSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGN-------------TSELIFNAVHVKDAGFYVCRV 84 (218)
T ss_dssp -CCEEECCCCEEEETTSBEEEECEETTTTSSEEEEEETTEECTTCC-------------SSEEEETTCCGGGCEEEEEEE
T ss_pred CCEEEECCCCeEEeCCCcEEEEeeecCCCCCEEEEEECCEECCCCC-------------CCEEEEccCChhhCeEeEEEE
Confidence 4688899999999999999999999988889999999998876321 135899999999999999999
Q ss_pred eCCCCce-eeeeeEEEEcCCCC--------CcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCC
Q psy14540 82 TNRVGSQ-THSADMRVYDAPGQ--------PQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDA 152 (291)
Q Consensus 82 ~~~~~~~-~~~~~l~v~~~~~~--------~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~ 152 (291)
.+..+.. +..+.+.|...+.. +.........+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+....
T Consensus 85 ~n~~~~~~s~~~~l~V~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~v~L~C~~-~g~p~~~v~W~~~~~~~~~~~ 163 (218)
T 3k0w_A 85 NNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVA-VGSPIPHYQWFKNELPLTHET 163 (218)
T ss_dssp ECTTCCEECCCEEEEEECCCGGGCTTCCSBCCSSCEEEECCCCEEECTTCCEEEECEE-EBSSCCEEEEEETTEECTTCC
T ss_pred EcCCCCceeeEEEEEEEccCcccccccccccCCCceEEECCCceeecCCCcEEEEEEe-cccCCCeEEEEECCEECCCCC
Confidence 9876643 55677788765311 0001122234455778899999999999 688999999999998875431
Q ss_pred ceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCcc-CCc
Q psy14540 153 EITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVAS-DNH 231 (291)
Q Consensus 153 ~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~-~~~ 231 (291)
...|.|.++..+|+|.|+|.|.|..+. .+.
T Consensus 164 -------------------------------------------------~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~ 194 (218)
T 3k0w_A 164 -------------------------------------------------KKLYMVPYVDLEHQGTYWCHVYNDRDSQDSK 194 (218)
T ss_dssp -------------------------------------------------SSEEEESSCCGGGCEEEEEEEECSSCEEECC
T ss_pred -------------------------------------------------CCEEEEeecChhcCEEEEEEEEcCCCCceee
Confidence 124666666777777777777776544 566
Q ss_pred eeEEEEecCCC
Q psy14540 232 SSNLRVNVPPH 242 (291)
Q Consensus 232 ~~~l~v~~~p~ 242 (291)
.+.|.|...+.
T Consensus 195 ~~~l~V~~~~~ 205 (218)
T 3k0w_A 195 KVEIIIDELNN 205 (218)
T ss_dssp CEEEEECC---
T ss_pred eEEEEEeCCcc
Confidence 66777765433
No 78
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Probab=99.94 E-value=2.2e-26 Score=184.49 Aligned_cols=226 Identities=19% Similarity=0.317 Sum_probs=155.4
Q ss_pred CCcceeecceeeeecCCcEEEEEEecCCC---CCeeEEEECCeecCCCeeE-eceEEeeccceEEEEEEeecCCCCC-eE
Q psy14540 2 HPQLIYKFIQQTLQPGPPVSLKCIATGNP---TPHISWKLDGYPLAGDRFV-MGQYMSLHGDVISHVNISSVRVEDS-GI 76 (291)
Q Consensus 2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~---~~~v~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~-G~ 76 (291)
+|.+...+....+.+|+.++|.|.+.+.+ .+.+.|++++..+...... ....... .. ..|.|.+++.+|+ |.
T Consensus 103 ~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~-~~--~~L~i~~v~~~d~~G~ 179 (388)
T 2v5m_A 103 AQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVL-PS--GELHIREVGPEDGYKS 179 (388)
T ss_dssp CCCCCCBCCCEEEETTSCEEECCBCCTTTTTTEEEEEEEETTCCEECSSSCBTTTEEEC-TT--SCEEESSCCGGGGGCC
T ss_pred ccccccCccceeeecCCcEEEEEECcCCCCCCcceEEEEeCCCcccccccCCCCcEEEc-cC--CcEEEecCCccccCee
Confidence 45566667778899999999999998743 3789999988765311100 0111111 11 2589999999999 99
Q ss_pred EEEEEeCCCCcee-e---eeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEecc---
Q psy14540 77 YQCTATNRVGSQT-H---SADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPIL--- 149 (291)
Q Consensus 77 y~C~~~~~~~~~~-~---~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~--- 149 (291)
|+|.+.+..+... . ...+.|..+.....+ ...........+.+|+.+.|.|.+ .+.|.+.+.|++++..+.
T Consensus 180 Y~C~~~n~~~~~~~~~~~~~~l~v~~~~~~~~p-~~~~~~~~~~~v~~G~~v~l~C~~-~g~p~p~v~W~~~~~~~~~~~ 257 (388)
T 2v5m_A 180 YQCRTKHRLTGETRLSATKGRLVITEPISSSAP-RTPALVQKPLELMVAHTISLLCPA-QGFPAPSFRWYKFIEGTTRKQ 257 (388)
T ss_dssp EEEEEEETTTCCEEECSSCBCEEEECCCSCEEE-ECCSSCCCCEEEETTSCEEECCCC-EEESCCEEEEEEECTTSSCEE
T ss_pred EEEEeccCCCCceeeccccceEEEecCCcCCCC-cCccccCCceEEeeCCcEEEEEEC-CCCCCCEEEEEecCCCCcccc
Confidence 9999987654322 1 235666554211100 011112233567889999999998 688999999999754322
Q ss_pred ---CCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEE----------------------------
Q psy14540 150 ---SDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRV---------------------------- 198 (291)
Q Consensus 150 ---~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~---------------------------- 198 (291)
...+.... ...|.|..+..+|.|.|+|.+.|..|.......+.+
T Consensus 258 ~~~~~~~~~~~-----~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~v~~g~~~~l~C~~~ 332 (388)
T 2v5m_A 258 AVVLNDRVKQV-----SGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYT 332 (388)
T ss_dssp ECCCSSSEEEE-----TTEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEEEEEEEEESSEEEECTTSCEEEEEEEE
T ss_pred cccccCceecc-----cCEEEECcCCHHHCeEEEEEEecCCCceeEEEEEEEeCCCccccCCCcEEecCCCCEEEEEEec
Confidence 12222211 347999999999999999999999887655444441
Q ss_pred ----------------eccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEE
Q psy14540 199 ----------------NEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRV 237 (291)
Q Consensus 199 ----------------~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v 237 (291)
......|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus 333 g~p~p~i~W~~~g~~i~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V 387 (388)
T 2v5m_A 333 GNPIKTVSWMKDGKAIGHSESVLRIESVKKEDKGMYQCFVRNDRESAEASAELKL 387 (388)
T ss_dssp EECCCEEEEEETTEECSCCSSEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred cccCCeEEEEECCEECccCCCEEEEecCChhhCEEEEEEEEcCCCcEEEEEEEEe
Confidence 112678999999999999999999999998888887765
No 79
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, IG, membrane, homphilic, glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB: 2xy2_A* 2vaj_A
Probab=99.94 E-value=2.2e-25 Score=160.68 Aligned_cols=167 Identities=24% Similarity=0.461 Sum_probs=116.8
Q ss_pred cceeecceeeeecCCcEEEEEEecCCCCCeeEEEE-CCeecC-CCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEE
Q psy14540 4 QLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKL-DGYPLA-GDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTA 81 (291)
Q Consensus 4 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~-~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~ 81 (291)
.|...|.+..+.+|+++.|.|.+.+.|. .+.|++ ++..+. ..++.. ......+.|.|.+++.+|+|.|+|.+
T Consensus 4 ~~~~~~~~~~v~~G~~v~L~C~~~~~p~-~v~W~~~~~~~~~~~~~~~~-----~~~~~~~~L~i~~~~~~d~G~Y~C~~ 77 (189)
T 2v44_A 4 QVTISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIISTQRVVV-----QKEGVRSRLTIYNANIEDAGIYRCQA 77 (189)
T ss_dssp EEEESCSEEEEETTCCEEEEEEEEECCS-EEEEECTTSCBCCCCSSEEE-----EEETTEEEEEECSCCGGGCEEEEEEE
T ss_pred EEEecCCceEEecCCcEEEEEEeecCCe-eEEEEeCCCCccCCCceEEE-----ECCCCeEEEEEccCCcccCeEEEEEE
Confidence 5677888899999999999999988766 899999 777665 333322 12233467999999999999999999
Q ss_pred eCCCCce-eeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccC--CCceEEec
Q psy14540 82 TNRVGSQ-THSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILS--DAEITIRS 158 (291)
Q Consensus 82 ~~~~~~~-~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~--~~~~~~~~ 158 (291)
.+..+.. ...+.|.|...+.. ...+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+.. ..+.....
T Consensus 78 ~~~~g~~~~~~~~l~v~~~p~~-------~~~~~~~~~~~g~~~~l~C~~-~g~p~p~v~W~~~~~~~~~~~~~~~~~~~ 149 (189)
T 2v44_A 78 TDAKGQTQEATVVLEIYQKLTF-------REVVSPQEFKQGEDAEVVCRV-SSSPAPAVSWLYHNEEVTTISDNRFAMLA 149 (189)
T ss_dssp ECTTSCEEEEEEEEEEECCCEE-------ESCCCSEEEETTSCEEECCEE-ECSSCCEEEEEEEC--CEECCCTTEEECT
T ss_pred EeCCCCcEEEEEEEEEecCCce-------eecCCcEEEeCCCCEEEEEEE-CcCCCCcEEEEECCcEEeccCCCCEEEec
Confidence 9887764 66777788765421 122344678899999999999 5899999999999887653 22332221
Q ss_pred cCCceEEEEEeeCCCCCceeEEEEEEecCC
Q psy14540 159 SGEYTSSLSIATLSTGHSGNYTCVASNTVA 188 (291)
Q Consensus 159 ~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~ 188 (291)
. ..|.|..+..+|.|.|+|.|.|..+
T Consensus 150 ~----~~L~i~~v~~~d~G~Y~C~a~n~~~ 175 (189)
T 2v44_A 150 N----NNLQILNINKSDEGIYRCEGRVEAR 175 (189)
T ss_dssp T----SCEEETTCCGGGCEEEEEEEEETTT
T ss_pred C----CcEEEEEcCcccCeEEEEEEEcccc
Confidence 1 1355555555555555555555443
No 80
>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*
Probab=99.94 E-value=3e-26 Score=166.10 Aligned_cols=170 Identities=17% Similarity=0.178 Sum_probs=109.7
Q ss_pred eeeeecCCcEEEEEEe---cCCCCCeeEEEECCeecCC--------CeeEe-----ceEEeeccceEEEEEEeecCCCCC
Q psy14540 11 QQTLQPGPPVSLKCIA---TGNPTPHISWKLDGYPLAG--------DRFVM-----GQYMSLHGDVISHVNISSVRVEDS 74 (291)
Q Consensus 11 ~~~v~~g~~v~l~C~~---~~~~~~~v~W~~~~~~~~~--------~~~~~-----~~~~~~~~~~~~~l~i~~~~~~d~ 74 (291)
.+++..|+.++|.|.+ .+.|.+.|+|+|+|..... ..... ...........+.|.|.+++.+|+
T Consensus 2 ~Vta~~Ge~v~L~C~~~~v~~~p~~~V~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~ 81 (203)
T 4fa8_A 2 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD 81 (203)
T ss_dssp CCEEETTCCEEEEEECSSTTCSTTSEEEEEEEETTTEEEEEEEEETTEEEECGGGBTTEEEEEETTEEEEEESSCCGGGC
T ss_pred CeEEEcCCCEEEEeeeeccCCCCCcEEEEEEcCCCcceEEEEecCCceEEeeccccceEEEEEcCCEEEEEEccCCHHHC
Confidence 4678999999999964 4578899999998753321 00000 011112233457899999999999
Q ss_pred eEEEEEEeCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccC----
Q psy14540 75 GIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILS---- 150 (291)
Q Consensus 75 G~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~---- 150 (291)
|.|+|.+.+..+.....+.|.|..++ .....+....+.+|+.++|.|.+ .|.|.|.+.|++++..+..
T Consensus 82 G~Y~C~a~n~~g~~~~~~~l~V~~p~-------~~~~~~~~~~v~~g~~~~l~C~~-~G~P~P~v~W~~~~~~~~~~~~~ 153 (203)
T 4fa8_A 82 GNYLCRMKLGETEVTKQEHLSVVKPL-------TLSVHSERSQFPDFSVLTVTCTV-NAFPHPHVQWLMPEGVEPAPTAA 153 (203)
T ss_dssp EEEEEEEEETTEEEEEEEEEEEEEEE-------EEEEEEEECCSSCSCCEEEEEEE-EEESCCEEEECCC----------
T ss_pred eEEEEEEEcCCCcEEEEEEEEecCCc-------eeeecceeEEEcCCCEEEEEEEc-CCCCCCEEEEEECCeeecCcccc
Confidence 99999999988888888888887543 12233445677899999999999 6899999999987655432
Q ss_pred CCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCC
Q psy14540 151 DAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVAS 189 (291)
Q Consensus 151 ~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 189 (291)
..+.....++. ...+.+..+..+|.|.|+|.|.|..|.
T Consensus 154 ~~r~~~~~~g~-l~il~i~~v~~~D~G~YtC~A~N~~G~ 191 (203)
T 4fa8_A 154 NGGVMKEKDGS-LSVAVDLSLPKPWHLPVTCVGKNDKEE 191 (203)
T ss_dssp --CCEECTTSC-EEEEEEEEECSSCCCCEEEEEESSSCE
T ss_pred cceEEEeCCCC-EEEEEECCCCHHHCEEEEEEEEcCCCE
Confidence 22222222221 223344455556666666666665554
No 81
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*
Probab=99.94 E-value=1.9e-25 Score=179.97 Aligned_cols=217 Identities=23% Similarity=0.364 Sum_probs=156.5
Q ss_pred cceeeeecCCcEEEEEEe-cCCCCCeeEEEECCeecC--CCeeEeceEEeeccceEEEEEEeecCCCC-CeEEEEEEeCC
Q psy14540 9 FIQQTLQPGPPVSLKCIA-TGNPTPHISWKLDGYPLA--GDRFVMGQYMSLHGDVISHVNISSVRVED-SGIYQCTATNR 84 (291)
Q Consensus 9 ~~~~~v~~g~~v~l~C~~-~~~~~~~v~W~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~i~~~~~~d-~G~y~C~~~~~ 84 (291)
+....+.+|+.++|.|.+ .+.|.+.+.|++++.... ..+... . .. ..|.|.+++..| +|.|+|.+.+.
T Consensus 123 ~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~-----~-~~--~~l~i~~v~~~d~~G~Y~C~a~n~ 194 (404)
T 3p3y_A 123 LDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQ-----G-HN--GDLYFSNVMLQDMQTDYSCNARFH 194 (404)
T ss_dssp CCCEEEETTSCEEECCCCCCCSSCCEEEEECTTSCBCCCCSSEEE-----C-TT--SCEEESSCCSGGGSSCBEEEEECT
T ss_pred CCCeEEccCCcEEEEeCCCCCCCCCeEEEeCCCccccCCCCcEEE-----c-CC--CcEEEEeeeeccCCcceEEEEEec
Confidence 345688999999999998 668888999999875433 222211 1 11 248899999999 59999999987
Q ss_pred CCce---eeeeeEEEEcCCCCC---cccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEec
Q psy14540 85 VGSQ---THSADMRVYDAPGQP---QDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRS 158 (291)
Q Consensus 85 ~~~~---~~~~~l~v~~~~~~~---~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~ 158 (291)
.+.. .....+.+...+... +.............+.+|+.+.|.|.+ .+.|.+.+.|++++..+.........
T Consensus 195 ~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~~~~G~~v~l~C~~-~g~p~~~v~W~~~~~~~~~~~~~~~~- 272 (404)
T 3p3y_A 195 FTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIA-SGVPTPDIAWYKKGGDLPSDKAKFEN- 272 (404)
T ss_dssp TTCCEEECCCBCEEEECCSCCCCCCCCBSSSCSSEEEEEEETTSCEEEECCB-CCSSCCEEEEEETTBCCCTTTEEEEG-
T ss_pred cccceeccCceeEEEeccCCccccCCccccccCCCCCceEecCCCEEEEEEE-CCCCCCcEEEEECCEECCCCcccccc-
Confidence 6653 233556665433211 111111111234568899999999998 78899999999999888655432221
Q ss_pred cCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEec--------------------------------------
Q psy14540 159 SGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNE-------------------------------------- 200 (291)
Q Consensus 159 ~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~-------------------------------------- 200 (291)
....|.|..+..+|.|.|+|.+.|..|.......+.+..
T Consensus 273 ---~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~ 349 (404)
T 3p3y_A 273 ---FNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKAAPYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVN 349 (404)
T ss_dssp ---GGTEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEEEEEEEECCCCEEECTTCCEEEECEEEEESCCEEEEEET
T ss_pred ---cCceEEEccCCHhHCEEEEEEEEeCCCcEEEEEEEEEeCCCeeeccCCcceeecCCcEEEEEEccccCCCceEEEEC
Confidence 134799999999999999999999888765555444110
Q ss_pred ---------------cceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEe
Q psy14540 201 ---------------YTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVN 238 (291)
Q Consensus 201 ---------------~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~ 238 (291)
....|.|.++..+|+|.|+|.|.|..|.....+.|.|.
T Consensus 350 g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 402 (404)
T 3p3y_A 350 GEPLQSAPPNPNREVAGDTIIFRDTQISSRAVYQCNTSNEHGYLLANAFVSVL 402 (404)
T ss_dssp TEEGGGSCCCTTEEEETTEEEESSCCSSCCCEEEEEEEETTEEEEEEEEEEEC
T ss_pred CEecCCCCCCceEEecCCEEEEeecCHHHCEEEEEEEEeCCCcEEEEEEEEEE
Confidence 14579999999999999999999999998888888775
No 82
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}
Probab=99.94 E-value=3.4e-25 Score=165.94 Aligned_cols=207 Identities=25% Similarity=0.339 Sum_probs=139.8
Q ss_pred CCcceee----cceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEE
Q psy14540 2 HPQLIYK----FIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIY 77 (291)
Q Consensus 2 ~p~~~~~----~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y 77 (291)
+|.|+.. +....+.+|+++.|.|.+.+.|.+.+.|++++..+.......... . .....+|.|.+++..|+|.|
T Consensus 11 ~P~~~~p~~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~-~--~~~~~~L~i~~v~~~d~G~Y 87 (241)
T 3grw_A 11 APYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIK-L--RHQQWSLVMESVVPSDRGNY 87 (241)
T ss_dssp CCEESSGGGGSCCEEEEETTSEEEEECCEECSSCCEEEEEETTEECCGGGSTTCCE-E--EGGGTEEEECSCCGGGCEEE
T ss_pred CceeEcCCCCCCcceEEcCCCeEEEEEEecCCCCceeEEEECCcccCCCCccccee-e--eccceEEEEEeCCcccCEEE
Confidence 5555543 346789999999999999988888999999999876221110000 0 11124599999999999999
Q ss_pred EEEEeCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeE----CCEeccCCCc
Q psy14540 78 QCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLK----NGLPILSDAE 153 (291)
Q Consensus 78 ~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~----~~~~~~~~~~ 153 (291)
+|.+.+..+.......+.|...+..+ .......+....+.+|+.+.|.|.+ .+.|.+.+.|++ ++..+.....
T Consensus 88 ~C~~~~~~~~~~~~~~l~V~~~~~~~--~~~~~~~~~~~~~~~g~~v~L~C~~-~~~p~p~v~W~~~~~~~g~~~~~~~~ 164 (241)
T 3grw_A 88 TCVVENKFGSIRQTYTLDVLERSPHR--PILQAGLPANQTAVLGSDVEFHCKV-YSDAQPHIQWLKHVEVNGSKVGPDGT 164 (241)
T ss_dssp EEEEEETTEEEEEEEEEEEECCCCCC--CEEEECTTCSEECCTTCCEEEEEEE-ECSSCCEEEEEEECCSSSCSSCTTTC
T ss_pred EEEEeecCCceEEEEEEEEeccCCCC--ceeecCCCccceecCCCEEEEEEEE-ecCCCCEEEEEEcccCCCcccCCCCc
Confidence 99999888888888888887654222 2222234455678899999999999 688999999999 7766654332
Q ss_pred eEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCcee
Q psy14540 154 ITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSS 233 (291)
Q Consensus 154 ~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~ 233 (291)
..... ..... . + .......|.|.++..+|+|.|+|.|.|..|....++
T Consensus 165 ~~~~~-------~~~~~-~--~----------------------~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~ 212 (241)
T 3grw_A 165 PYVTV-------LKSWI-S--E----------------------SVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAF 212 (241)
T ss_dssp CCEEE-------EEEEE-C--S----------------------BSEEEEEEEECSCCGGGCEEEEEEEECSSCEEEEEE
T ss_pred eeeee-------eeEee-e--e----------------------ecCCceEEEECcCCcccCcEEEEEEecCcceEEEEE
Confidence 11100 00000 0 0 001145788899999999999999999999888899
Q ss_pred EEEEecCCCCCCC
Q psy14540 234 NLRVNVPPHIGPF 246 (291)
Q Consensus 234 ~l~v~~~p~~~~~ 246 (291)
.|.|..+|.....
T Consensus 213 ~l~V~~~p~~~~~ 225 (241)
T 3grw_A 213 WLSVHGPRAAEEE 225 (241)
T ss_dssp EEEC---------
T ss_pred EEEecCCCCCCcc
Confidence 9999887765443
No 83
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*
Probab=99.94 E-value=1.4e-25 Score=159.73 Aligned_cols=170 Identities=19% Similarity=0.256 Sum_probs=124.7
Q ss_pred CCCcceeecceeeeecCCcEEEEEEecCCCCC-eeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEE
Q psy14540 1 SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTP-HISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQC 79 (291)
Q Consensus 1 s~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C 79 (291)
.+|.|...|....+.+|++++|.|.+.+.+.+ .+.|++++..+... ...|.|.+++.+|+|.|+|
T Consensus 3 ~~P~i~~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~--------------~~~L~i~~v~~~d~G~Y~C 68 (176)
T 1f2q_A 3 QKPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEET--------------NSSLNIVNAKFEDSGEYKC 68 (176)
T ss_dssp -CCCCEEESSCSEEETTCCEEEECCTTCC----CCEEEETTEECSCC--------------SSEEEECSCCGGGCEEEEE
T ss_pred CCCEEEcCCCCcceecCCcEEEEEeCCCCCCcceEEEEECCeECCCC--------------ceEEEEeccceecCEEEEE
Confidence 37899999998899999999999999886664 69999999877632 1358899999999999999
Q ss_pred EEeCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEecc
Q psy14540 80 TATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSS 159 (291)
Q Consensus 80 ~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~ 159 (291)
.+.+..+ +..+.+.|...+ ... . .....+.+|+.+.|.|.+..+.|.+.+.|+++|..+....
T Consensus 69 ~~~~~~~--s~~~~l~V~~~~------~~~-~-~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~------- 131 (176)
T 1f2q_A 69 QHQQVNE--SEPVYLEVFSDW------LLL-Q-ASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWY------- 131 (176)
T ss_dssp ECTTSSC--CCCEEEEEECSS------EEE-E-ESCSEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSCC-------
T ss_pred EcCCccc--cccEEEEEeCcc------eee-c-CCcceeeCCCCEEEEEEecCCCCceEEEEEECCEEEeeec-------
Confidence 9986443 445566666222 111 1 1224677999999999996577788999999998763210
Q ss_pred CCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCC-ccCCceeEEEEe
Q psy14540 160 GEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTV-ASDNHSSNLRVN 238 (291)
Q Consensus 160 ~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~-~~~~~~~~l~v~ 238 (291)
....|.|.++..+|+|.|+|.|.|.. +..+..+.|.|.
T Consensus 132 -----------------------------------------~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~ 170 (176)
T 1f2q_A 132 -----------------------------------------ENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNITVI 170 (176)
T ss_dssp -----------------------------------------CSSEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred -----------------------------------------CCCeEEECCCCcccCEEEEEEEEeCCcceEecCEEEEEe
Confidence 02357777777788888888888754 456677788888
Q ss_pred cCCC
Q psy14540 239 VPPH 242 (291)
Q Consensus 239 ~~p~ 242 (291)
.+|.
T Consensus 171 ~~p~ 174 (176)
T 1f2q_A 171 KAPR 174 (176)
T ss_dssp CSCC
T ss_pred cCCC
Confidence 7764
No 84
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Probab=99.94 E-value=3.1e-25 Score=165.06 Aligned_cols=202 Identities=22% Similarity=0.340 Sum_probs=143.5
Q ss_pred CCcceeec----ceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCC-eeEeceEEeeccceEEEEEEeecCCCCCeE
Q psy14540 2 HPQLIYKF----IQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGD-RFVMGQYMSLHGDVISHVNISSVRVEDSGI 76 (291)
Q Consensus 2 ~p~~~~~~----~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~ 76 (291)
+|.|...+ ....+.+|+++.|.|.+.+.|.+.+.|++++..+... ...... . ......|.|.+++..|+|.
T Consensus 15 ~P~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~--~--~~~~~~L~i~~~~~~d~G~ 90 (231)
T 3ojm_B 15 APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYK--V--RNQHWSLIMESVVPSDKGN 90 (231)
T ss_dssp EEEESCGGGGCCSCEEEETTSCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCE--E--EGGGTEEEECSCCGGGCEE
T ss_pred CCccccccccCceeEEEccCCCEEEEEecccCCCCeEEEEECCcccccccccccee--e--ecCcceEEEecCCcccCEE
Confidence 56666555 6778999999999999998888899999999987622 111100 1 1122469999999999999
Q ss_pred EEEEEeCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeE----CCEeccCCC
Q psy14540 77 YQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLK----NGLPILSDA 152 (291)
Q Consensus 77 y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~----~~~~~~~~~ 152 (291)
|+|.+.+..+.......+.|...+..+. ......+....+.+|+.+.|.|.+ .+.|.+.+.|++ +|..+....
T Consensus 91 Y~C~~~n~~~~~~~~~~l~V~~~~~~~p--~~~~~~~~~~~~~~g~~~~l~C~~-~~~p~p~v~W~~~~~~~g~~~~~~~ 167 (231)
T 3ojm_B 91 YTCVVENEYGSINHTYHLDVVERSRHRP--ILQAGLPANASTVVGGDVEFVCKV-YSDAQPHIQWIKHVEKNGSKYGPDG 167 (231)
T ss_dssp EEEEEEETTEEEEEEEEEEEECCCCCCC--EECTTCSCCEEEETTCCEEEECCE-ECSSCCEEEEEEECCBTTBSBCTTS
T ss_pred EEEEEecccCcccccEEEEEEcCCCCCC--ceeeccCCceEEEeCCcEEEEEEE-ecCCCCEEEEEECCCCCCccccCCC
Confidence 9999998888888888888887553221 222233455778899999999999 688999999999 666654332
Q ss_pred ceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCce
Q psy14540 153 EITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHS 232 (291)
Q Consensus 153 ~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~ 232 (291)
..... ......... .....|.|.++..+|+|.|+|.|.|..|.....
T Consensus 168 ~~~~~-------~~~~~~~~~--------------------------~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~ 214 (231)
T 3ojm_B 168 LPYLK-------VLKHSGINS--------------------------SNAEVLALFNVTEADAGEYICKVSNYIGQANQS 214 (231)
T ss_dssp CBCEE-------EEEECSTTC--------------------------SCTTEEEECSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred cceEe-------Eeccccccc--------------------------CCccEEEEecCCHHHCeEEEEEEEeccceEeeE
Confidence 21100 000000000 113568899999999999999999999888888
Q ss_pred eEEEEecCCCC
Q psy14540 233 SNLRVNVPPHI 243 (291)
Q Consensus 233 ~~l~v~~~p~~ 243 (291)
+.|.|..+|..
T Consensus 215 ~~l~V~~~p~~ 225 (231)
T 3ojm_B 215 AWLTVLPKQQA 225 (231)
T ss_dssp EEEEEECCC--
T ss_pred EEEEEecCCCC
Confidence 99998877653
No 85
>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}
Probab=99.94 E-value=4.8e-25 Score=159.80 Aligned_cols=173 Identities=18% Similarity=0.227 Sum_probs=114.9
Q ss_pred CCCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEE
Q psy14540 1 SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCT 80 (291)
Q Consensus 1 s~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~ 80 (291)
.+|.|...|.. .+.+|++++|.|.+.+ +.+.+.|+|++..+...... .........|.|.+++.+|+|.|+|.
T Consensus 4 ~~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~-----~~~~~~~~~L~i~~v~~~D~G~Y~C~ 76 (196)
T 3p2t_A 4 PKPTLWAEPGS-VISWGNSVTIWCQGTL-EAREYRLDKEESPAPWDRQN-----PLEPKNKARFSIPSMTEDYAGRYRCY 76 (196)
T ss_dssp CCCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTSCSCSEEEC-----CCSSSSEEEEEESSCCGGGCEEEEEE
T ss_pred CCCEEEccCCC-cCCCCCcEEEEeeCCC-CCCEEEEEECCCCCcccccc-----cccCCceEEEEeccCCcccCceEEEE
Confidence 36888888877 8999999999999987 67799999999876532111 11122346799999999999999999
Q ss_pred EeCCCC--ceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEec
Q psy14540 81 ATNRVG--SQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRS 158 (291)
Q Consensus 81 ~~~~~~--~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~ 158 (291)
+.+..+ ..+..+.|.|...+..|. .. ..+. ..+.+|+.++|.|.+. + +.+.+.|++++..+..........
T Consensus 77 a~n~~g~~~~s~~~~l~V~~~~~~p~--~~--~~~~-~~v~~G~~v~L~C~~~-~-~~~~~~w~k~g~~~~~~~~~~~~~ 149 (196)
T 3p2t_A 77 YRSPVGWSQPSDPLELVMTGAYSKPT--LS--ALPS-PLVTSGKSVTLLCQSR-S-PMDTFLLCKERAAHPLLCLRSEHG 149 (196)
T ss_dssp EEETTEEBCCCCCEEEEEECSSCCCE--EE--EESC-SEECTTCCEEEEEEEE-E-EEEEEEEEETTCCCGGGSEEEEEE
T ss_pred EeCCCcccCCCccEEEEecCCCCCCE--EE--eCCc-ceecCCCeEEEEEecC-C-CCCEEEEEeCCCcccceeeccccc
Confidence 998776 345566777765443221 11 1112 2578999999999984 4 456899999998765433221111
Q ss_pred cCCceEEEEEeeCCCCCceeEEEEEEecC
Q psy14540 159 SGEYTSSLSIATLSTGHSGNYTCVASNTV 187 (291)
Q Consensus 159 ~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 187 (291)
.......|.|.++..+|.|.|+|.+.|..
T Consensus 150 ~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~ 178 (196)
T 3p2t_A 150 AQQHQAEFPMSPVTSVHGGTYRCFSSHGF 178 (196)
T ss_dssp EEEEEEEEEECSCCGGGCEEEEEEEECGG
T ss_pred ccCcceEEEeCCCcccCCCeEEEEEEcCC
Confidence 11123445555555555555555555544
No 86
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}
Probab=99.93 E-value=4.1e-25 Score=178.18 Aligned_cols=210 Identities=14% Similarity=0.187 Sum_probs=133.0
Q ss_pred eeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCceee-
Q psy14540 12 QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQTH- 90 (291)
Q Consensus 12 ~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~- 90 (291)
..+..|+.+.|.|.+.|.|.+.|+|++++..+............... .-+...|+|.|+|.+.|..|....
T Consensus 149 ~~~~~~~~~~L~C~a~G~P~P~i~W~k~~~~~~~~~~~~~~~~~~~~--------~~l~~~d~G~Y~C~A~N~~G~~~~~ 220 (423)
T 3qs7_E 149 YFRKMENQDALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEE--------KVLHELFGTDIRCCARNELGRECTR 220 (423)
T ss_dssp EEEECSSSSCEEEEEEESSCCEEEEEEC-------------CEEECC--------SEECCCCSSCEEEEEECSSCEEEEE
T ss_pred cEeccCCceEEEEEEeeecCCeEEEEECCCCCccccccccccccccc--------eEEecccCeEEEEEEEcCCCCccee
Confidence 34667889999999999999999999988754311100000000000 012578999999999998876543
Q ss_pred eeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEec--c---CCceEE
Q psy14540 91 SADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRS--S---GEYTSS 165 (291)
Q Consensus 91 ~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~--~---~~~~~~ 165 (291)
.+.|.|...+.. .+....+.+|+.+.|.|.+....|.+.+.|++++..+.......... . ......
T Consensus 221 ~~~l~V~~~p~~---------~~~~~~v~~G~~v~L~C~~~g~~p~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~ 291 (423)
T 3qs7_E 221 LFTIDLNQTPQT---------TLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILF 291 (423)
T ss_dssp CEEEESSSCCCS---------STTEEEEETTSCEEEEEEEEESSSCCCEEEEESSSBCCGGGEEEEEEEETTTEEEEEEE
T ss_pred eEEEEEecCCcc---------CCCceEEeCCCeEEEEEEEEcCCCCcEEEEEECCEEccccceeecccccCCceeEEEEE
Confidence 345555443322 12246788999999999995337789999999998875543221110 0 112357
Q ss_pred EEEeeCCCCCceeEEEEEEecCCCCCCceEEEEecc---------------------------------------c----
Q psy14540 166 LSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEY---------------------------------------T---- 202 (291)
Q Consensus 166 l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~---------------------------------------~---- 202 (291)
|.|..+..+|+|.|+|.|.|. ....+.+.+... .
T Consensus 292 L~I~~v~~~D~G~Y~C~A~N~---~~~~~~L~V~~~p~i~~~~~~~~~~v~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~ 368 (423)
T 3qs7_E 292 AFVSSVARNDTGYYTCSSSKH---PSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFP 368 (423)
T ss_dssp EEESSCCTTTCEEEEEEETTE---EEEEEEEEEESSCEEEEC---CEECCCTTCCCCEEEEEEEESCCEEEEEETTEEEE
T ss_pred EEEeecCHHHCEEEEEEEecC---CCceEEEEEEeCCcceEcCCCccEEecCCCeEEEEEEEEEcCCCeEEEEECCEECC
Confidence 999999999999999999987 222222221000 0
Q ss_pred -------eEEEE--eeeecCCCeeEEEEeeeCCccCCceeEEEEecCC
Q psy14540 203 -------SSLSI--ATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPP 241 (291)
Q Consensus 203 -------~~l~i--~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p 241 (291)
..+.+ ......|+|.|+|.|.|..|..+.++.|.|...|
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~D~G~YtC~A~N~~G~~~~s~~L~v~~~p 416 (423)
T 3qs7_E 369 CEQKGLDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRSGT 416 (423)
T ss_dssp CBCCBCSSSSEEEEECCCTTCCSCEEEEEEETTEEEEEEEEEC-----
T ss_pred CccccccCCcEEEEEecccccCEEEEEEEEcCCceEEEEEEEEEecCC
Confidence 12233 5566789999999999999999999999887755
No 87
>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4
Probab=99.93 E-value=1.7e-25 Score=164.32 Aligned_cols=195 Identities=22% Similarity=0.400 Sum_probs=128.7
Q ss_pred CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCC-----CeeEe--ceEEeeccceEEEEEEeecCCCCC
Q psy14540 2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAG-----DRFVM--GQYMSLHGDVISHVNISSVRVEDS 74 (291)
Q Consensus 2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~-----~~~~~--~~~~~~~~~~~~~l~i~~~~~~d~ 74 (291)
|+.|...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+.. ..... ........ ..|.|.+++..|+
T Consensus 1 ~~~v~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~---~~L~i~~v~~~D~ 77 (212)
T 1f97_A 1 KGSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSS---SGITFSSVTRKDN 77 (212)
T ss_dssp CCEEECSCSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEET---TEEEESCCCGGGC
T ss_pred CceEEecCCCeEEEcCCCEEEEeEeCCCCCcEEEEEECCCceeeEEecCCcccccccCcEEeec---eeEEEcccCcccC
Confidence 45677888889999999999999999888899999997755210 00000 00000011 5699999999999
Q ss_pred eEEEEEEeCCCC--ceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCE-eccCC
Q psy14540 75 GIYQCTATNRVG--SQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGL-PILSD 151 (291)
Q Consensus 75 G~y~C~~~~~~~--~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~-~~~~~ 151 (291)
|.|+|.+.+..+ .....+.|.|..+|..+.. .....+.+|+.+.|.|.+..+.|.+.+.|++++. .+...
T Consensus 78 G~Y~C~~~~~~g~~~~~~~~~l~V~~~p~~~~~-------~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~l~~~ 150 (212)
T 1f97_A 78 GEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTI-------SVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTAD 150 (212)
T ss_dssp EEEEEEEEETTSSSEEEEEEEEEEEBCCCCCEE-------ECCSEEETTSCEEEEEECSCCBSCCEEEEEETTEESBC--
T ss_pred eEEEEEEEccCCCcccEEEEEEEEEcCCCCccc-------CCccccCCCCeEEEEEEcccCcCCCEEEEEeCCccccccc
Confidence 999999998765 4566778888876644311 1224678999999999944799999999999998 77543
Q ss_pred CceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccC--
Q psy14540 152 AEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASD-- 229 (291)
Q Consensus 152 ~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~-- 229 (291)
....... ..+.| ........|.|.++..+|+|.|+|.|.|..|..
T Consensus 151 ~~~~~~~----------------~~~~~-----------------~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~ 197 (212)
T 1f97_A 151 AKKTRAF----------------MNSSF-----------------TIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMR 197 (212)
T ss_dssp ---CBSC----------------SSSCE-----------------EECTTTCCEEESSCCGGGCEEEEEEEECSSSCCEE
T ss_pred ccccccc----------------cCcee-----------------EecCCCceEEEEecChhhCcEEEEEEccccCCccc
Confidence 3210000 00000 111223456666777777777777777776655
Q ss_pred CceeEEEEec
Q psy14540 230 NHSSNLRVNV 239 (291)
Q Consensus 230 ~~~~~l~v~~ 239 (291)
+..+.|.|..
T Consensus 198 s~~~~l~V~~ 207 (212)
T 1f97_A 198 SEAAHMDAVE 207 (212)
T ss_dssp CCCEEEEEES
T ss_pred cceEEEEEEE
Confidence 6666666654
No 88
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Probab=99.93 E-value=3.5e-25 Score=157.56 Aligned_cols=124 Identities=18% Similarity=0.248 Sum_probs=94.3
Q ss_pred CCCcceeecceeeeecCCcEEEEEEecCCCCCe-eEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEE
Q psy14540 1 SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPH-ISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQC 79 (291)
Q Consensus 1 s~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~-v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C 79 (291)
.+|.|...|....+.+|++++|.|.+.+.+.+. +.|++++..+... ...|.|.+++.+|+|.|+|
T Consensus 6 ~~p~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~~~~W~~~~~~~~~~--------------~~~L~i~~~~~~d~G~Y~C 71 (175)
T 1fnl_A 6 PKAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQ--------------ASSYFIDAATVNDSGEYRC 71 (175)
T ss_dssp CCCEEEEESCCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEESS--------------CSEEEESSCCGGGCEEEEE
T ss_pred CCCEEEEcCCceeeeCCCcEEEEeeCCCCCCCcceEEEECCEEccCC--------------ceEEEEeCCCcccCEEEEE
Confidence 368888899888999999999999998876555 8999999876521 1358899999999999999
Q ss_pred EEeCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEec
Q psy14540 80 TATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPI 148 (291)
Q Consensus 80 ~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~ 148 (291)
.+.+..+ +..+.+.|...+ ... .. ....+.+|+.+.|.|.+..+.|.+.+.|+++|..+
T Consensus 72 ~~~n~~~--s~~~~l~V~~~~------~~~-~~-~~~~~~~g~~~~l~C~~~~~~~~~~~~W~k~g~~~ 130 (175)
T 1fnl_A 72 QTNLSTL--SDPVQLEVHIGW------LLL-QA-PRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDR 130 (175)
T ss_dssp ECSSSCC--CCCEEEEEECSS------EEE-EC-SCSEEETTCCEEEEEEECTTCCCEEEEEEETTEEE
T ss_pred EeeCCcc--cccEEEEEeCCC------cee-eC-CCceecCCCCEEEEEEcCCCCCceEEEEEECCeEc
Confidence 9986443 455666776322 111 11 23567799999999999444455699999999876
No 89
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A
Probab=99.93 E-value=1.6e-25 Score=179.07 Aligned_cols=215 Identities=20% Similarity=0.303 Sum_probs=153.0
Q ss_pred cceeeeecCCcEEEEEEecC-CCCCeeEEEECCeecC---CCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCC
Q psy14540 9 FIQQTLQPGPPVSLKCIATG-NPTPHISWKLDGYPLA---GDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNR 84 (291)
Q Consensus 9 ~~~~~v~~g~~v~l~C~~~~-~~~~~v~W~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~ 84 (291)
+....+.+|+.+.|.|.+.. .|.+.+.|++++..+. ..+... ... ...|.|.+++.+|+|.|+|.+.+.
T Consensus 108 ~~~~~v~~G~~v~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~-----~~~--~~~L~i~~~~~~d~G~Y~C~~~n~ 180 (382)
T 1cs6_A 108 RDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFV-----SQT--TGNLYIAKTEASDLGNYSCFATSH 180 (382)
T ss_dssp CCCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCCCCSSEEE-----CTT--TCCEEESSCCGGGCEEEEEEEEEE
T ss_pred CCceEEecCCcEEEEeCCCCCCCCcEEEEEECCCccccccCceEEE-----ecC--ceEEEEEeeCcccCeeEEEEEEEc
Confidence 44567899999999998653 6778999999987643 111111 111 135899999999999999999876
Q ss_pred CCcee-----eeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEecc
Q psy14540 85 VGSQT-----HSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSS 159 (291)
Q Consensus 85 ~~~~~-----~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~ 159 (291)
.+... ....+.+................+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+... .
T Consensus 181 ~g~~~~~~~s~~~~l~v~~~~~~~~~P~~~~~~~~~~~~~~G~~v~l~C~~-~g~p~~~i~W~~~~~~~~~~-------~ 252 (382)
T 1cs6_A 181 IDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFA-FGNPVPQIKWRKLDGSQTSK-------W 252 (382)
T ss_dssp ETTEEEEEECCCEEEEEESCCCCCEEEEEEECCCSEEEEETTCCEEEECEE-EEESCCEEEEEECCSCCSCC-------C
T ss_pred cccccceeEccceeeccchhhcccCCCceeccCCCceEEeCCCeEEEEEEE-ccCCCCEEEEEECCcccccE-------E
Confidence 54322 22344544321111111222223446778899999999998 68899999999988765431 1
Q ss_pred CCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEec---------------------------------------
Q psy14540 160 GEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNE--------------------------------------- 200 (291)
Q Consensus 160 ~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~--------------------------------------- 200 (291)
......|.|..+..+|.|.|+|.+.|..|.......+.+..
T Consensus 253 ~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g 332 (382)
T 1cs6_A 253 LSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHAQPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDG 332 (382)
T ss_dssp SBSSSEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEEEEEECCCCEEEETTCCEEEECEEEEESCCEEEEEETT
T ss_pred ecCCcEEEEccCChhhCEEEEEEEEcCCCeEEEEEEEEEecCCCcccCCCccEEcCCCeEEEEEEeeeecCCEEEEEECC
Confidence 12345799999999999999999999887655444443110
Q ss_pred -----------cceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEe
Q psy14540 201 -----------YTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVN 238 (291)
Q Consensus 201 -----------~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~ 238 (291)
....|.|.++..+|+|.|+|.|.|..|....++.|.|.
T Consensus 333 ~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 381 (382)
T 1cs6_A 333 QPLASQNRIEVSGGELRFSKLVLEDSGMYQCVAENKHGTVYASAELTVQ 381 (382)
T ss_dssp EECCCCSSEEEETTEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred EECCCCceEEEECCEEEECcCCcccCEEEEEEEEeCCCeEEEEEEEEEe
Confidence 13579999999999999999999999998888888875
No 90
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}
Probab=99.93 E-value=6.6e-25 Score=161.15 Aligned_cols=168 Identities=19% Similarity=0.299 Sum_probs=109.7
Q ss_pred ecCCcEEEEEEecC-CCCCeeEEEECCeecCC-CeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCceeeee
Q psy14540 15 QPGPPVSLKCIATG-NPTPHISWKLDGYPLAG-DRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQTHSA 92 (291)
Q Consensus 15 ~~g~~v~l~C~~~~-~~~~~v~W~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~ 92 (291)
..++.+.|.|.+.+ .|.+.+.|++++..+.. .++.. ........|.|.+++.+|+|.|+|.+.+..+.....+
T Consensus 15 c~~~~~~l~C~~~~~~p~~~i~W~~~g~~i~~~~~~~~-----~~~~~~~~L~i~~v~~~D~G~Y~C~~~n~~~~~~~~~ 89 (212)
T 2r15_A 15 STAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKT-----GVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTV 89 (212)
T ss_dssp ECSSEEEEEEEBSSCCSSCEEEEEETTEECCCCSSEEE-----EEETTEEEEEEESCCGGGCEEEEEEEECSSCEEEEEE
T ss_pred EcCceEEEEEEEeccCCCceEEEEECCEEccCCCeEEE-----EEeCCEEEEEECCCCcccCEEEEEEEecCCcceEEEE
Confidence 46777888888877 45889999999998873 33332 1223356799999999999999999998777666555
Q ss_pred eEEEEcCC--------------CCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEec
Q psy14540 93 DMRVYDAP--------------GQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRS 158 (291)
Q Consensus 93 ~l~v~~~~--------------~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~ 158 (291)
.+.|.... ............+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+....+.....
T Consensus 90 ~l~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~-~g~p~p~v~W~~~~~~~~~~~~~~~~~ 168 (212)
T 2r15_A 90 DLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNV-WGDPPPEVSWLKNEKALAQTDHCNLKF 168 (212)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHHHSCEEEEBCCSEEEEETTCCEEEEEEE-ECSSCCEEEEEETTEEECCCSSEEEEE
T ss_pred EEEEeeccchhhhccccCcccccccCCCcccccCCCcEEEccCCeEEEEEEE-cCCCCceEEEEECCeECccCCCEEEEE
Confidence 55443200 000001122233445778899999999999 689999999999999987766555443
Q ss_pred cCCceEEEEEeeCCCCCceeEEEEEEecCC
Q psy14540 159 SGEYTSSLSIATLSTGHSGNYTCVASNTVA 188 (291)
Q Consensus 159 ~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~ 188 (291)
.......|.|..+..+|.|.|+|.|.|..|
T Consensus 169 ~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g 198 (212)
T 2r15_A 169 EAGRTAYFTINGVSTADSGKYGLVVKNKYG 198 (212)
T ss_dssp ETTTEEEEEESSCCGGGCEEEEEEEEETTE
T ss_pred cCCCEEEEEEcCcchHHCeEEEEEEEcCCC
Confidence 322233444444444444444444444333
No 91
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4
Probab=99.93 E-value=4.5e-25 Score=177.26 Aligned_cols=226 Identities=23% Similarity=0.295 Sum_probs=154.1
Q ss_pred ecceeeeecCCcEEEEEEe-cCCCCCeeEEEECCe---ecCCCeeEeceEEeeccceEEEEEEeecCCCCCe---EEEEE
Q psy14540 8 KFIQQTLQPGPPVSLKCIA-TGNPTPHISWKLDGY---PLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSG---IYQCT 80 (291)
Q Consensus 8 ~~~~~~v~~g~~v~l~C~~-~~~~~~~v~W~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G---~y~C~ 80 (291)
.+....+.+|+.+.|.|.+ .+.|.+.+.|++++. ............... .. ..|.|.+++..|+| .|+|.
T Consensus 106 ~~~~~~~~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~-~~--~~L~i~~v~~~d~G~~~~Y~C~ 182 (395)
T 1bih_A 106 KTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAG-PD--GNLYFTIVTKEDVSDIYKYVCT 182 (395)
T ss_dssp EEEEECCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTTEEEC-TT--SCEEEEEECGGGCCSSEEEEEE
T ss_pred CCcceeeeeCCcEEEEecCCCCCCCCeEEEEecCCCcCcccccccccccEEEc-CC--CcEEEEEEeeccCCCceEEEEE
Confidence 3456678899999999996 567889999999862 111100000011111 11 24889999999999 99999
Q ss_pred EeCCCCceeeeeeEEEEcC---CCCCc-ccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEE
Q psy14540 81 ATNRVGSQTHSADMRVYDA---PGQPQ-DVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITI 156 (291)
Q Consensus 81 ~~~~~~~~~~~~~l~v~~~---~~~~~-~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~ 156 (291)
+.+..+............. ...+. ....+...+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+........
T Consensus 183 a~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~G~~v~l~C~~-~g~p~~~i~W~~~g~~~~~~~~~~~ 261 (395)
T 1bih_A 183 AKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVTMIYCMY-GSNPMGYPNYFKNGKDVNGNPEDRI 261 (395)
T ss_dssp EECTTCSSCEEEEEEEECCCBCCSSCCCCCCEEEEECCSEEEETTSCEEEEEEE-ECSSCCCCEEEETTEECCCCTTSSE
T ss_pred EEecccceEEEeeeEEecccccccccccCCcCceecCCceEEECCCcEEEEEEe-ccCCCCeEEEEECCEEcCCCCceeE
Confidence 9988776444333222211 11000 00011112345678899999999999 6889999999999998865433222
Q ss_pred ecc-CCceEEEEEeeCCCCCceeEEEEEEecCCCCCC-ceEEEEe-----------------------------------
Q psy14540 157 RSS-GEYTSSLSIATLSTGHSGNYTCVASNTVASDNH-SSNLRVN----------------------------------- 199 (291)
Q Consensus 157 ~~~-~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~-~~~~~~~----------------------------------- 199 (291)
... ......|.|..+..+|.|.|+|.+.|..|.... .+.+.+.
T Consensus 262 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~~~P~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v 341 (395)
T 1bih_A 262 TRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNV 341 (395)
T ss_dssp ESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSSCEEEEEEEEEEEEEEEEECCCSEEEECTTSCEEEECEEEEESCCCC
T ss_pred EEEecCCCceEEEccCChhhCEEEEEEEEeCCCCceEEEEEEEEEcCCccccCCCcceEecCCCeEEEEEEECcccCCee
Confidence 221 122347999999999999999999999887544 3333310
Q ss_pred ---------------ccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEE
Q psy14540 200 ---------------EYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRV 237 (291)
Q Consensus 200 ---------------~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v 237 (291)
.....|.|.++..+|+|.|+|.|.|..|.....+.|.|
T Consensus 342 ~W~~~g~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V 394 (395)
T 1bih_A 342 VWSHNAKPLSGGRATVTDSGLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQV 394 (395)
T ss_dssp EEEETTEECCSSSEEEETTEEEESSCCSTTCEEEEEEEEETTEEEEEEEEEEE
T ss_pred EEEECCEECCCCceEEECCEEEEeeCCcccCEEEEEEEEccCCCceEEEEEEE
Confidence 01347999999999999999999999998888888776
No 92
>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}
Probab=99.93 E-value=1.2e-24 Score=157.71 Aligned_cols=172 Identities=19% Similarity=0.225 Sum_probs=103.3
Q ss_pred CCCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEE
Q psy14540 1 SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCT 80 (291)
Q Consensus 1 s~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~ 80 (291)
.+|.|...|.. .+.+|++++|.|.+.+.+. .+.|+|++..+...... .........|.|.+++.+|+|.|+|.
T Consensus 4 ~~P~i~~~p~~-~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~~-----~~~~~~~~~L~i~~v~~~D~G~Y~C~ 76 (196)
T 2d3v_A 4 SKATLWAEPGS-VISRGNSVTIRCQGTLEAQ-EYRLVKEGSPEPWDTQN-----PLEPKNKARFSIPSMTEHHAGRYRCY 76 (196)
T ss_dssp CBCEEEEESCS-EEETTCCEEEEEECCTTCC-EEEEEETTCSSCSEEEC-----CCSSTTEEEEEESSCCGGGCEEEEEE
T ss_pred CCCEEEeCCCC-cccCCCeEEEEEeCCCCCc-EEEEEECCCCCCccccc-----ccCCccccEEEeccCChhHCeEEEEE
Confidence 37888888874 8999999999999987655 89999999876532110 01122346799999999999999999
Q ss_pred EeCCCCc--eeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCce-EEe
Q psy14540 81 ATNRVGS--QTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEI-TIR 157 (291)
Q Consensus 81 ~~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~-~~~ 157 (291)
+.+..+. .+..+.|.|......| ..... ....+.+|+.++|.|.+ .+.| +.+.|++++..+...... ...
T Consensus 77 a~n~~g~~~~s~~~~l~V~~~~~~p----~i~~~-~~~~v~~G~~v~L~C~~-~~~p-~~~~W~k~g~~~~~~~~~~~~~ 149 (196)
T 2d3v_A 77 YYSPAGWSEPSDPLELVVTGFYNKP----TLSAL-PSPVVTSGENVTLQCGS-RLRF-DRFILTEEGDHKLSWTLDSQLT 149 (196)
T ss_dssp EEETTEECBCCCCEEEEEECSSCCC----EEEC------------CEEEEEE-SSCC-SEEEEEEC---CCEEEEECEEC
T ss_pred EeCCCCcCCcCccEEEEecCCCCCC----eEEcc-CCccccCCCcEEEEEEc-CCCC-CEEEEEccCCcccccccccccc
Confidence 9876543 2455677777643222 11112 22467899999999999 6777 899999999876422111 011
Q ss_pred ccCCceEEEEEeeCCCCCceeEEEEEEec
Q psy14540 158 SSGEYTSSLSIATLSTGHSGNYTCVASNT 186 (291)
Q Consensus 158 ~~~~~~~~l~i~~~~~~d~g~y~C~~~~~ 186 (291)
..+.....|.|.++..+|.|.|+|.+.|.
T Consensus 150 ~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~ 178 (196)
T 2d3v_A 150 PSGQFQALFPVGPVTPSHRWMLRCYGSRR 178 (196)
T ss_dssp TTSCEEEEEECCCCBTTBCEEEEEEEEET
T ss_pred cCCCceeEEEeeecCcccCeeEEEEEEcc
Confidence 11122345555555555555555555543
No 93
>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.93 E-value=3.5e-24 Score=160.83 Aligned_cols=222 Identities=13% Similarity=0.174 Sum_probs=122.1
Q ss_pred CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEE
Q psy14540 2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTA 81 (291)
Q Consensus 2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~ 81 (291)
+|.|...|. ..+.+|++++|.|.+.. +.+.+.|+|+|..+...... . ..........|.|.+++.+|+|.|+|.+
T Consensus 7 kP~i~~~P~-~~V~~G~~VtL~C~~~~-~~~~~~W~k~g~~~~~~~~~-~--~~~~~~~~~~L~I~~v~~~DsG~Y~C~a 81 (257)
T 1b6u_A 7 KPSLLAHPG-PLVKSEETVILQCWSDV-RFQHFLLHREGKFKDTLHLI-G--EHHDGVSKANFSIGPMMQDLAGTYRCYG 81 (257)
T ss_dssp CCEECCBSC-SEEESSCCEEEEEEESS-CCSEEEEEEESTTCEEEEEE-C--BCCTTCEEEEEEECSCCTTTCEEEEEEE
T ss_pred CCEEEEcCC-CEecCCCCEEEEEecCC-CCcEEEEEECCCCCCcceee-e--eccCCCceEEEEeecCCcccCEEEEEeE
Confidence 678887776 67899999999999974 56789999998754311110 0 0011233467999999999999999999
Q ss_pred eCCC-----CceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEE
Q psy14540 82 TNRV-----GSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITI 156 (291)
Q Consensus 82 ~~~~-----~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~ 156 (291)
.+.. ...+..+.|.|......| .....+. ..+.+|+.++|.|.+ .+. .+.+.|+|+|..+........
T Consensus 82 ~~~~~~~~~s~~S~~~~L~V~~~~~~P----~l~~~p~-~~V~~G~~vtL~C~~-~~~-~~~~~w~k~g~~~~~~~~~~~ 154 (257)
T 1b6u_A 82 SVTHSPYQLSAPSDPLDIVITGLYEKP----SLSAQPG-PTVLAGESVTLSCSS-RSS-YDMYHLSREGEAHERRFSAGP 154 (257)
T ss_dssp ECSSCTTSCCCCCCCEEEEEECSSCCC----EEECSSC-TTCBTTCEEEEEEEC-SSC-CSEEEEEETTSSCEECCBCBC
T ss_pred eccCCCccccccCCCEEEecccCCCCc----ceEccCC-CccCCCCEEEEEEeC-CCC-CcEEEEEECCcccCccccccc
Confidence 7532 123556677787644322 1111222 357899999999998 454 468999999876543211100
Q ss_pred eccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCC-----ccCCc
Q psy14540 157 RSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTV-----ASDNH 231 (291)
Q Consensus 157 ~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~-----~~~~~ 231 (291)
...+. ....|.|.+++ |+|.|+|.+.+.. ...+.
T Consensus 155 ~~~~~---------------------------------------~~~~l~I~~v~--D~G~Y~C~a~~~~~p~~~s~~S~ 193 (257)
T 1b6u_A 155 KVNGT---------------------------------------FQADFPLGPAT--HGGTYRCFGSFRDSPYEWSNSSD 193 (257)
T ss_dssp CSSSC---------------------------------------CBEEEEEEECC--SCEEEEEEEECSSCTTBBCCCCC
T ss_pred ccCCc---------------------------------------eeEEEEecccc--cCEEEEEEEEcCCCCcccccCCC
Confidence 00000 13456667776 8888888887642 34567
Q ss_pred eeEEEEecCCCCCCCCcc--cccCCceEEEEEEeecCCCCceEEEEECC
Q psy14540 232 SSNLRVNVPPHIGPFTFG--ELMEGVRTQVACVVQSGDLPLSLQWYKNG 278 (291)
Q Consensus 232 ~~~l~v~~~p~~~~~~~~--~~~~g~~v~l~C~~~~~~p~~~v~W~~~~ 278 (291)
.+.|.|..+|.+..+... ....|..+.|.|.+ |.+...+.|..-+
T Consensus 194 pl~L~V~g~p~~~~p~~~~~~~~~g~~~~l~~~~--~~~~~~~~~~~~~ 240 (257)
T 1b6u_A 194 PLLVSVTGNPSNSWPSPTEPSSETGNPRHLHAAA--EQKLISEEDLNLD 240 (257)
T ss_dssp CEEECCBCCC---------------------------------------
T ss_pred CEEEEEeccCCCCCCCCcccCccCCCeEEEEEEE--cchHHHHHHhhhh
Confidence 788888888776532221 26789999999987 7778899997654
No 94
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A
Probab=99.93 E-value=2.6e-24 Score=156.38 Aligned_cols=188 Identities=21% Similarity=0.306 Sum_probs=126.4
Q ss_pred cceeecceeee-ecCCcEEEEEEecCCCCCeeEEEECC-eecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEE
Q psy14540 4 QLIYKFIQQTL-QPGPPVSLKCIATGNPTPHISWKLDG-YPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTA 81 (291)
Q Consensus 4 ~~~~~~~~~~v-~~g~~v~l~C~~~~~~~~~v~W~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~ 81 (291)
.+.+.|....+ .+|++++|.|.+.+.|.+.+.|++.. ..+. .... .. .....|.|.+++.+|+|.|+|.+
T Consensus 2 ~v~i~p~~~~~~~~G~~v~L~C~~~g~P~p~i~W~~~~~~~~~-~~~~------~~-~~~~~L~I~~v~~~D~G~Y~C~a 73 (202)
T 1vca_A 2 KIETTPESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLN-GKVT------NE-GTTSTLTMNPVSFGNEHSYLCTA 73 (202)
T ss_dssp EEEEESSSEEEEETTSCEEEEEEEESCSSCEEEEEETTCCCCS-SEEE------EE-TTEEEEEESSCCGGGCSEEEEEE
T ss_pred eEEECCCCcEEEcCCCcEEEEEeecCCCCCeEEEECCCCCCcc-ceEE------Ec-CCccEEEECcCCHHHCEEEEEEE
Confidence 34566666544 59999999999998888999999843 2221 1111 11 12345999999999999999999
Q ss_pred eCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCC--ceeEEeECCEeccCCCceEEecc
Q psy14540 82 TNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPP--LTISWLKNGLPILSDAEITIRSS 159 (291)
Q Consensus 82 ~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~--~~~~W~~~~~~~~~~~~~~~~~~ 159 (291)
.+..+.....+.|.|...|..+ ... . . ..+.+|+.++|.|.+..+.|. +.+.|++++..+..... ...
T Consensus 74 ~n~~~~~~~~~~l~V~~~p~~~---~~~--~-~-~~~~~G~~~~L~C~~~~~~p~~~~~i~W~k~~~~l~~~~~---~~~ 143 (202)
T 1vca_A 74 TCESRKLEKGIQVEIYSFPKDP---EIH--L-S-GPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEF---LED 143 (202)
T ss_dssp EETTEEEEEEEEEEEEBCCSCC---EEE--E-S-SCEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEEC---CSC
T ss_pred EECCceEeeEEEEEEEeCCCCC---EeC--C-c-eEEcCCCCEEEEEEECCcCCCCCeEEEEEeCCeECccccc---ccc
Confidence 9888777788889998766432 111 1 1 457899999999999544554 47999999987632100 000
Q ss_pred CCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCcc-------CCce
Q psy14540 160 GEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVAS-------DNHS 232 (291)
Q Consensus 160 ~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~-------~~~~ 232 (291)
....+.+ .....|.|.....+|+|.|+|.|.|..+. ...+
T Consensus 144 -------------~~~~~~~--------------------~~~~~l~i~~~~~d~~g~ytC~A~n~~~~~~~~~~~~~~~ 190 (202)
T 1vca_A 144 -------------ADRKSLE--------------------TKSLEVTFTPVIEDIGKVLVCRAKLHIDEMDSVPTVRQAV 190 (202)
T ss_dssp -------------CSSCCCE--------------------EEEEEEEECCCGGGTTCEEEEEEEECSCCCTTSCSEEEEE
T ss_pred -------------cCcCcce--------------------EEEEEEEEEeeeccCCCeEEEEEEccccCCCCcceeEeeE
Confidence 0000000 01234667777788889999999987754 3457
Q ss_pred eEEEEecCCC
Q psy14540 233 SNLRVNVPPH 242 (291)
Q Consensus 233 ~~l~v~~~p~ 242 (291)
+.|.|.++|.
T Consensus 191 ~~L~V~y~P~ 200 (202)
T 1vca_A 191 KELQVYISPK 200 (202)
T ss_dssp EECCEECCC-
T ss_pred EEEEEecCCC
Confidence 7888888885
No 95
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*
Probab=99.92 E-value=1e-24 Score=174.35 Aligned_cols=131 Identities=30% Similarity=0.530 Sum_probs=101.5
Q ss_pred cceeeeecCCcEEEEEEecCCCCCeeEEEEC-CeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCc
Q psy14540 9 FIQQTLQPGPPVSLKCIATGNPTPHISWKLD-GYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGS 87 (291)
Q Consensus 9 ~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~ 87 (291)
+....+.+|+.+.|.|.+.+.|.+.+.|+++ +..+....... .. ...|.|.+++.+|+|.|+|.+.|..|.
T Consensus 212 ~~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~~~~~~------~~--~~~L~I~~v~~~D~G~Y~C~a~N~~G~ 283 (384)
T 3kld_A 212 PETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRH------KS--NGILEIPNFQQEDAGSYECVAENSRGK 283 (384)
T ss_dssp CSEEEEETTSCEEEEEEEEEESCCEEEEEETTCCCCCTTCEEC------TT--SCEEEECSCCGGGCEEEEEEEEETTEE
T ss_pred CCceEecCCCcEEEEEEEeecCCCcEEEEeCCCccccccceec------CC--CcEEEECCCChhhCEEEEEEEEcCCCe
Confidence 4456788999999999999999999999994 44444221111 11 135999999999999999999999998
Q ss_pred eeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceE
Q psy14540 88 QTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEIT 155 (291)
Q Consensus 88 ~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~ 155 (291)
......|.|...|. .........+.+|+.+.|.|.+ .|.|.+.+.|+++|..+....+..
T Consensus 284 ~~~~~~l~v~~~P~-------~~~~~~~~~v~~g~~v~l~C~~-~g~P~p~i~W~k~g~~l~~~~~~~ 343 (384)
T 3kld_A 284 NVAKGQLTFYAQPN-------WVQIINDIHVAMEESVFWECKA-NGRPKPTYRWLKNGDPLLTRDRIQ 343 (384)
T ss_dssp EEEEEEEEEEEEEE-------EEECCCCEEECTTCCEEEECEE-EEESCCEEEEEETTEECCCBTTEE
T ss_pred EEEEEEEEEecCCc-------cccCCCceEecCCCCEEEEeEC-CccCCCeEEEEECCEECCCCccEE
Confidence 88888888876541 1233445778899999999999 689999999999999886655443
No 96
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A
Probab=99.92 E-value=5.3e-24 Score=150.78 Aligned_cols=124 Identities=16% Similarity=0.284 Sum_probs=94.2
Q ss_pred CCcceeecceeeeecCCcEEEEEEecCCC-CCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEE
Q psy14540 2 HPQLIYKFIQQTLQPGPPVSLKCIATGNP-TPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCT 80 (291)
Q Consensus 2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~ 80 (291)
+|.|...|....+.+|+.+.|.|.+.+.+ .+.+.|++++..+.... ..+.|.+++.+|+|.|+|.
T Consensus 4 ~p~i~~~p~~~~v~~G~~v~l~C~~~~~p~~~~~~W~~~g~~~~~~~--------------~~~~~~~~~~~d~G~Y~C~ 69 (170)
T 3ry4_A 4 KAVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHT--------------QPSYRFKANNNDSGEYTCQ 69 (170)
T ss_dssp BCEEEEESCCSEEETTCEEEEEEESCCCSSSSCEEEEETTEECTTCC--------------SSEEEEECCGGGCEEEEEE
T ss_pred CCEEEeCCCCeEEECCCcEEEEEEecCCCCcceEEEEECCeEcccCc--------------cceEEEecccccCeEEEEE
Confidence 46777788877899999999999998865 67899999999877321 1245778999999999999
Q ss_pred EeCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEecc
Q psy14540 81 ATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPIL 149 (291)
Q Consensus 81 ~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~ 149 (291)
+.+.. ....+.+.|...+ ... . .....+.+|+.+.|.|.+..+.|.+.+.|++++..+.
T Consensus 70 ~~~~~--~s~~~~l~v~~~~------~~~-~-~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~ 128 (170)
T 3ry4_A 70 TGQTS--LSDPVHLTVLFEW------LVL-Q-TPHLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQK 128 (170)
T ss_dssp ETTSB--CCCCEEEEEECCS------EEE-E-CSCSEECTTCCEEEEEEEGGGCCEEEEEEEETTEEEE
T ss_pred EeCCC--ceEeEEEEEECCc------eEe-c-CCCceeecCCeEEEEEECCCCCCCceEEEEECCeEcc
Confidence 98543 3445667776533 111 1 2235678899999999996677779999999987753
No 97
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G
Probab=99.92 E-value=4e-25 Score=161.88 Aligned_cols=141 Identities=21% Similarity=0.446 Sum_probs=101.6
Q ss_pred CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecC-----CCeeEe--ceEEeeccceEEEEEEeecCCCCC
Q psy14540 2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLA-----GDRFVM--GQYMSLHGDVISHVNISSVRVEDS 74 (291)
Q Consensus 2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~-----~~~~~~--~~~~~~~~~~~~~l~i~~~~~~d~ 74 (291)
++.|...+....+.+|+++.|.|.+.+.|.+.+.|++++..+. ...... ........ ..|.|.+++..|+
T Consensus 4 ~~~i~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~---~~L~i~~~~~~d~ 80 (209)
T 1nbq_A 4 SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLP---TGITFKSVTREDT 80 (209)
T ss_dssp CCEEECSCSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEET---TEEECSCCCTTSC
T ss_pred eEEEEcCCCceEEEcCCCEEEEEEEeCCCCcEEEEEEcCCceeEEEEecCccCccccCceEeec---cEEEEeeCCHHHC
Confidence 4567777888899999999999999988889999999775421 000000 00000001 5699999999999
Q ss_pred eEEEEEEeCCCC--ceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCC
Q psy14540 75 GIYQCTATNRVG--SQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDA 152 (291)
Q Consensus 75 G~y~C~~~~~~~--~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~ 152 (291)
|.|+|.+.+..+ .....+.|.|...|..+.. .....+.+|+.+.|.|.+..+.|.+.+.|++++..+....
T Consensus 81 G~Y~C~~~~~~g~~~~~~~~~l~V~~~p~~~~~-------~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~~~~~~ 153 (209)
T 1nbq_A 81 GTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTV-------NIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNP 153 (209)
T ss_dssp SEEEEEEEETTSSCEECCEEECCEEBCCCCCCC-------CCBSEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCS
T ss_pred cEEEEEEecCCCCccceEEEEEEEecCCcCCCc-------ccccceecCCEEEEEEeCCCCCCCceeEEEECCeeCCCcc
Confidence 999999997754 3455667777776644311 1234578999999999965789999999999998876543
No 98
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*
Probab=99.92 E-value=1.9e-23 Score=152.92 Aligned_cols=187 Identities=18% Similarity=0.262 Sum_probs=124.4
Q ss_pred ceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEe--------------ceEEeeccceEEEEEEeecC
Q psy14540 5 LIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVM--------------GQYMSLHGDVISHVNISSVR 70 (291)
Q Consensus 5 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~l~i~~~~ 70 (291)
+.+.+.+..+.+|++++|.|...+.+.+.+.|++++.......... ..+.....+ .+|.|.+++
T Consensus 2 ~~i~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~--~~L~i~~v~ 79 (208)
T 3r4d_A 2 VTIEAVPPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSN--GSLLFQMIT 79 (208)
T ss_dssp CEEEEESSEEETTCCEEEEEECCCSSCSEEEEEESSCCCGGGEEEEEEGGGTEEEECTTCCSSEEECTT--SCEEECSCC
T ss_pred ccccCccceeecCCcEEEEEeCCCCCceEEEeccCCCCCccceEEEEecCCCccccCccccceeEEecC--CeEEEcccc
Confidence 5566777889999999999997777888999999764322111100 000000111 359999999
Q ss_pred CCCCeEEEEEEeCCC-CceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEecc
Q psy14540 71 VEDSGIYQCTATNRV-GSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPIL 149 (291)
Q Consensus 71 ~~d~G~y~C~~~~~~-~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~ 149 (291)
..|+|.|+|.+.+.. +.....+.|.|...+..|. .. ..... +.+|+.+.|.|.+ .+.| +.+.|++++..+.
T Consensus 80 ~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~---i~-~~~~~--~~~g~~v~l~C~~-~~~p-p~i~W~~~g~~l~ 151 (208)
T 3r4d_A 80 MKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPF---LQ-VTNTT--VKELDSVTLTCLS-NDIG-ANIQWLFNSQSLQ 151 (208)
T ss_dssp GGGCEEEEEEEECSSCEEEEEEEEEEEECCCCCCE---EE-ESCSS--CCTTCCEEEEEEC-SCTT-CEEEEEETTEECC
T ss_pred ccCCeEEEEEEEcccCceeEEEEEEEeccCCCCCE---Ee-cCCce--EeeCCCEEEEEEC-CCCC-CceEEEECCEeCC
Confidence 999999999999774 4566677788876654331 11 11222 7889999999998 5655 7999999999886
Q ss_pred CCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCcc-
Q psy14540 150 SDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVAS- 228 (291)
Q Consensus 150 ~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~- 228 (291)
...+...... ...|.|.++..+|+|.|+|.|.|..|.
T Consensus 152 ~~~~~~~~~~------------------------------------------~~~L~i~~v~~~d~G~Y~C~a~N~~g~~ 189 (208)
T 3r4d_A 152 LTERMTLSQN------------------------------------------NSILRIDPIKREDAGEYQCEISNPVSVR 189 (208)
T ss_dssp CCSSEEEETT------------------------------------------TTEEEESSCCGGGCEEEEEEEECTTCCE
T ss_pred CCCCeEEcCC------------------------------------------CCEEEEeccCHHhCeEEEEEEecCCCcc
Confidence 5544332211 245777777777788888888877744
Q ss_pred CCceeEEEEecCCCC
Q psy14540 229 DNHSSNLRVNVPPHI 243 (291)
Q Consensus 229 ~~~~~~l~v~~~p~~ 243 (291)
.+..+.|.|..+|..
T Consensus 190 ~s~~~~l~v~~~~~~ 204 (208)
T 3r4d_A 190 RSNSIKLDIIFDPHH 204 (208)
T ss_dssp ECCCEEECCC-----
T ss_pred cCCceeeeEEeCCcc
Confidence 566777777666543
No 99
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X
Probab=99.92 E-value=4.6e-25 Score=162.18 Aligned_cols=185 Identities=20% Similarity=0.271 Sum_probs=123.1
Q ss_pred ceeecceeeeecCCcEEEEEEecCCC----CCeeEEEECC----------------eecC------CCeeEeceEEeecc
Q psy14540 5 LIYKFIQQTLQPGPPVSLKCIATGNP----TPHISWKLDG----------------YPLA------GDRFVMGQYMSLHG 58 (291)
Q Consensus 5 ~~~~~~~~~v~~g~~v~l~C~~~~~~----~~~v~W~~~~----------------~~~~------~~~~~~~~~~~~~~ 58 (291)
|...+....+.+|+++.|.|.+.+.+ .+.+.|++++ ..+. ..+..... ....
T Consensus 3 i~~~~~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~ 80 (214)
T 3jz7_A 3 ITTPEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTS--NDVK 80 (214)
T ss_dssp ---CEEEEEEETTSCEEECCBCCCCTTCCSCCEEEEEEEESSSSCCSEEEEEEETTEEECCCCGGGTTTEEESC--SCGG
T ss_pred eecCCceEEEecCCCEEEEEEEecCCCCCCcEEEEEEecCCCCCCCceEEEEEeCCeEccccCCccccceEEec--cCcc
Confidence 44556778899999999999998755 4689999843 2221 01111100 0011
Q ss_pred ceEEEEEEeecCCCCCeEEEEEEeCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCce
Q psy14540 59 DVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLT 138 (291)
Q Consensus 59 ~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~ 138 (291)
....+|.|.+++.+|+|.|+|.+.+..+.....+.|.|...+..+.. .....+.+|+.+.|.|.+..+.|.+.
T Consensus 81 ~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~~~-------~~~~~~~~g~~v~l~C~~~~g~p~~~ 153 (214)
T 3jz7_A 81 SGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSGTRC-------FVDGSEEIGNDFKLKCEPKEGSLPLQ 153 (214)
T ss_dssp GTBCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCBSCEE-------EEESCCBTTCCEEEEEECSBCCSSCE
T ss_pred CCcccEEEccCChhhCeEEEEEEEeCCCccccEEEEEEEcCCCCcee-------eeecceecCCcEEEEecCCCCCCCCE
Confidence 23466999999999999999999988887888889999887643311 11234678999999999866899999
Q ss_pred eEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeE
Q psy14540 139 ISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNY 218 (291)
Q Consensus 139 ~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y 218 (291)
+.|++++........... ......|.|.++..+|+|.|
T Consensus 154 v~W~~~~~~~~~~~~~~~------------------------------------------~~~~~~L~i~~~~~~d~G~Y 191 (214)
T 3jz7_A 154 FEWQKLSDSQTMPTPWLA------------------------------------------EMTSPVISVKNASSEYSGTY 191 (214)
T ss_dssp EEEEECSTTCCCCGGGGG------------------------------------------GTTSSEEEECSCCGGGCEEE
T ss_pred EEEEECCCCCccCcccee------------------------------------------ccCCCEEEEecCCHHHCEEE
Confidence 999995432211110000 00123577777777778888
Q ss_pred EEEeeeCCccCCceeEEEEecC
Q psy14540 219 TCVASNTVASDNHSSNLRVNVP 240 (291)
Q Consensus 219 ~C~~~~~~~~~~~~~~l~v~~~ 240 (291)
+|.|.|..|.....+.|.|..|
T Consensus 192 ~C~a~N~~g~~~~~~~l~V~~P 213 (214)
T 3jz7_A 192 SCTVQNRVGSDQCMLRLDVVPP 213 (214)
T ss_dssp EEEEECSSCEEEEEEEECCBCC
T ss_pred EEEEEcCCCcEEEEEEEEEeCC
Confidence 8888887777777777766644
No 100
>3nl4_L Antigen binding fragment, immunoglobulin IGG - LI; FAB, rabbit, conformation-specific, amyloid, immune system; 1.54A {Oryctolagus cuniculus} PDB: 4hbc_L
Probab=99.92 E-value=2e-23 Score=153.30 Aligned_cols=184 Identities=17% Similarity=0.265 Sum_probs=122.7
Q ss_pred CcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECC--eecC----C-Cee---EeceEEeeccceEEEEEEeecCCC
Q psy14540 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDG--YPLA----G-DRF---VMGQYMSLHGDVISHVNISSVRVE 72 (291)
Q Consensus 3 p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~--~~~~----~-~~~---~~~~~~~~~~~~~~~l~i~~~~~~ 72 (291)
|.|...|..+.+.+|++++|.|.+.+.+.+.+.|+|+. .... . ... ...+.........++|.|.+++.+
T Consensus 2 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~ 81 (213)
T 3nl4_L 2 VVMTQTPASVSEPVGGTVTIKCQASQSISSYLAWYQQKPGQRPRLLIYETSTLASGVPSRFKGSGSGTDFTLTISDLECA 81 (213)
T ss_dssp CCEEEECSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEECSCCGG
T ss_pred ccEEeCCCeEEEcCCCCEEEEEEecCCCCceEEEEEECCCCCcEEEEEeCCccCCCCCccEEEecCCCEEEEEECCCChH
Confidence 67778888899999999999999998888999999842 1110 0 000 001111112334568999999999
Q ss_pred CCeEEEEEEeCCCC---ceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEecc
Q psy14540 73 DSGIYQCTATNRVG---SQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPIL 149 (291)
Q Consensus 73 d~G~y~C~~~~~~~---~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~ 149 (291)
|+|.|+|.+.+..+ .......+.|......| ... ..+....+.+|+.++|.|.+..+.|.+.+.|+++|..+.
T Consensus 82 D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~p---~v~-~~~~~~~~~~g~~v~l~C~~~g~~P~~~v~W~k~g~~~~ 157 (213)
T 3nl4_L 82 DAATYYCQSTYENPTYVSFGGGTEVGVKGDPVAP---TVL-IFPPSADLVATGTVTIVCVANKYFPDVTVTWEVDGTTQT 157 (213)
T ss_dssp GCEEEEEEECCSSTTTCEECCCEEEEEECCCBCC---EEE-EECCCHHHHTTSEEEEEEEEEEEBSCCEEEEEETTEECC
T ss_pred HCEEEEEecCCCCceeEEeCCCeEEEEeCCCcCC---eEE-EeCCchhhccCCcEeEEEEEecccCCcEEEEEeCCccCC
Confidence 99999999987665 34455667776533222 111 112223455799999999995448899999999998875
Q ss_pred CCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEee
Q psy14540 150 SDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVAS 223 (291)
Q Consensus 150 ~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~ 223 (291)
... +..........|.|.. .+.|.|..+..+|+|.|+|.|.
T Consensus 158 ~~~-------------~~~~~~~~~~~~~~~~--------------------~s~L~i~~~~~~d~g~Y~C~a~ 198 (213)
T 3nl4_L 158 TGI-------------ENSKTPQNSADCTYNL--------------------SSTLTLTSTEYNSHKEYTCKVT 198 (213)
T ss_dssp SSE-------------EEEECCCCTTTCCEEE--------------------EEEEEEEHHHHHTCCEEEEEEE
T ss_pred CCe-------------ecccCcccCCCCeEEE--------------------EEEEEecHHHcCCCCeEEEEEE
Confidence 431 0111122333455543 3468888888888888888887
No 101
>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A
Probab=99.92 E-value=2.2e-24 Score=156.59 Aligned_cols=174 Identities=18% Similarity=0.180 Sum_probs=110.6
Q ss_pred CCCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEE
Q psy14540 1 SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCT 80 (291)
Q Consensus 1 s~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~ 80 (291)
.+|.|...|. ..+.+|++++|.|.+.+.+. .+.|+|++..+....... ........|.|.+++.+|+|.|+|.
T Consensus 4 ~~P~i~~~p~-~~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~~~-----~~~~~~~~L~i~~v~~~D~G~Y~C~ 76 (198)
T 1ugn_A 4 PKPTLWAEPG-SVITQGSPVTLRCQGGQETQ-EYRLYREKKTAPWITRIP-----QELVKKGQFPIPSITWEHTGRYRCY 76 (198)
T ss_dssp CCCEEEEESC-SEEETTCCEEEEEECCTTCC-CEEEEESSSCCHHHHTSC-----HHHHTTTEEEESSCCGGGCEEEEEE
T ss_pred CCCeEeccCC-CcccCCCcEEEEEEecCCCc-EEEEEECCcccccccccc-----ccCCcccEEEECCCCHHHCeEEEEE
Confidence 3788888886 48999999999999987654 799999998664110000 0011124588999999999999999
Q ss_pred EeCCC-C--ceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCce-EE
Q psy14540 81 ATNRV-G--SQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEI-TI 156 (291)
Q Consensus 81 ~~~~~-~--~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~-~~ 156 (291)
+.+.. + ..+..+.|.|...+..| ... .. ....+.+|+.++|.|.+ .+. .+.+.|++++..+...... ..
T Consensus 77 a~n~~~g~~~~s~~~~l~V~~~~~~p--~i~--~~-~~~~v~~G~~v~L~C~~-~~~-~~~v~W~k~g~~~~~~~~~~~~ 149 (198)
T 1ugn_A 77 YGSDTAGRSESSDPLELVVTGAYIKP--TLS--AQ-PSPVVNSGGNVTLQCDS-QVA-FDGFILCKEGEDEHPQCLNSQP 149 (198)
T ss_dssp EEETTTEECCCCCCEEEEEECSSCCC--EEE--EE-SCSEEETTCCEEEEEEC-SSC-CSEEEEEEC------CEEEC--
T ss_pred EECCCCCcccCCccEEEEEcccccCC--ccc--cC-CccccCCCCcEEEEEec-CCC-CcEEEEEECCCccCCccccccc
Confidence 98766 4 34566777777643222 111 11 22567899999999999 565 6799999999876432111 11
Q ss_pred eccCCceEEEEEeeCCCCCceeEEEEEEecCC
Q psy14540 157 RSSGEYTSSLSIATLSTGHSGNYTCVASNTVA 188 (291)
Q Consensus 157 ~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~ 188 (291)
...+.....|.|.++..+|.|.|+|.|.|..+
T Consensus 150 ~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~ 181 (198)
T 1ugn_A 150 HARGSSRAIFSVGPVSPSRRWWYRCYAYDSNS 181 (198)
T ss_dssp ----CCEEEEEECCCCTTSCEEEEEEEECTTS
T ss_pred cCCCcceeEEEecccCcccCeEEEEEEEeCCC
Confidence 11112245666777777777777776666543
No 102
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B
Probab=99.92 E-value=3.5e-24 Score=156.07 Aligned_cols=133 Identities=19% Similarity=0.213 Sum_probs=95.2
Q ss_pred ceeecceeeeecCCcEEEEEEecCCCC-----CeeEEEE-CCeecC-CCeeEeceEEeeccceEEEEEEeecCCCCCeEE
Q psy14540 5 LIYKFIQQTLQPGPPVSLKCIATGNPT-----PHISWKL-DGYPLA-GDRFVMGQYMSLHGDVISHVNISSVRVEDSGIY 77 (291)
Q Consensus 5 ~~~~~~~~~v~~g~~v~l~C~~~~~~~-----~~v~W~~-~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y 77 (291)
+...+....+.+|+++.|.|.+.+.+. +.+.|++ ++.... ..+...... .......+|.|.+++.+|+|.|
T Consensus 5 v~~p~~~v~v~~G~~v~L~C~~~~~p~~~~~~~~v~W~k~~~~~~~~~~r~~~~~~--~~~~~~~~L~I~~v~~~D~G~Y 82 (202)
T 3bp6_B 5 VTAPKEVYTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEE--QLPLGKALFHIPSVQVRDSGQY 82 (202)
T ss_dssp EECSCSEEEEETTSCEEEEEEECTTC---CTTEEEEEEECC--CCCBCSSCEECGG--GGGGTEEEEEECSCCGGGCEEE
T ss_pred EecCCcCEEEeCCCcEEEEEEecCCCCCCccceEEEEEcCCCcccccCCceEEeec--cccCCeeEEEECCCCHHHCcEE
Confidence 444556788999999999999988765 7899999 443332 223222110 0112446799999999999999
Q ss_pred EEEEeCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEec
Q psy14540 78 QCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPI 148 (291)
Q Consensus 78 ~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~ 148 (291)
+|.+.+..+.....+.|.|...+..|... ...+.+|+.+.|.|.+ .|.|.+.+.|++++..+
T Consensus 83 ~C~~~~~~~~~~~~~~l~V~~~~~~p~~~--------~~~~~~g~~v~l~C~~-~g~P~p~v~W~~~~~~~ 144 (202)
T 3bp6_B 83 RCLVICGAAWDYKYLTVKVKASYMRIDTR--------ILEVPGTGEVQLTCQA-RGYPLAEVSWQNVSVPA 144 (202)
T ss_dssp EEEEEETTEEEEEEEEEEEEBCCCCEEEE--------EEECTTTCCEEEEEEE-EEBSCCEEEETTCCSCC
T ss_pred EEEEEeCCCcceEEEEEEecCCCCcccEE--------EEecCCCCeEEEEEEc-cccCCceEEEEeCCCCc
Confidence 99999887777788888888765332111 1245689999999999 68999999999977654
No 103
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}
Probab=99.92 E-value=2.8e-24 Score=166.54 Aligned_cols=186 Identities=23% Similarity=0.398 Sum_probs=124.0
Q ss_pred CcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEe
Q psy14540 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTAT 82 (291)
Q Consensus 3 p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~ 82 (291)
|.|...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+....... ..... .. ..|.|.+++..|+|.|+|.+.
T Consensus 109 p~i~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~k~~~~~~~~~~~~-~~~~~-~~--~~L~i~~~~~~d~G~Y~C~a~ 184 (304)
T 2yd9_A 109 PNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNG-RIKQL-RS--GALQIESSEETDQGKYECVAT 184 (304)
T ss_dssp CEEEECCCCEEEETTSCEEECCEEECSSCCEEEEEETTEECCGGGGTT-SEEEC-TT--SCEEECSCCGGGCEEEEEEEE
T ss_pred CeeecCCccEEEeCCCeEEEEEECccCCCCeEEEEECCEECcCCCCcc-eEEeC-CC--eEEEEccCCcccCEEEEEEEE
Confidence 677777888889999999999999998899999999998876321100 00011 11 259999999999999999999
Q ss_pred CCCCceeee-eeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCC
Q psy14540 83 NRVGSQTHS-ADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGE 161 (291)
Q Consensus 83 ~~~~~~~~~-~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~ 161 (291)
+..+..... ..+.|......| .....+....+.+|+.+.|.|.+ .|.|.+.+.|++++..+....... .
T Consensus 185 n~~g~~~~~~~~l~v~~~~~~P----~~~~~~~~~~v~~G~~v~l~C~~-~g~p~p~v~W~~~~~~l~~~~~~~-----~ 254 (304)
T 2yd9_A 185 NSAGVRYSSPANLYVRVQNVAP----RFSILPMSHEIMPGGNVNITCVA-VGSPMPYVKWMQGAEDLTPEDDMP-----V 254 (304)
T ss_dssp ETTEEEECCCEEEEEECCCEEE----EEEECCCCBCCCTTCCEEEEEEE-EEESCCEEEEEETTEECSCSSSCC-----B
T ss_pred eCCCCEEeccEEEEEEeeccCC----cEEecCCceEEcCCCeEEEEEEE-eeeCCCEEEEEECCEECCCccccc-----C
Confidence 887754432 455665432212 12223344668899999999999 688999999999998875543210 0
Q ss_pred ceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCC
Q psy14540 162 YTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPP 241 (291)
Q Consensus 162 ~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p 241 (291)
.. ..|.+.++ +|+|.|+|.|.|..|.....+.|.|..++
T Consensus 255 ~~---------------------------------------~~L~i~~~--~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~ 293 (304)
T 2yd9_A 255 GR---------------------------------------NVLELTDV--KDSANYTCVAMSSLGVIEAVAQITVKSLP 293 (304)
T ss_dssp SE---------------------------------------EEEEECSC--CSCEEEEEEEEETTEEEEEEEEEC-----
T ss_pred Cc---------------------------------------EEEEEccc--ccCEEEEEEEEeCCCcEEEEEEEEEecCc
Confidence 01 12333332 46777777777777777777777776655
Q ss_pred CC
Q psy14540 242 HI 243 (291)
Q Consensus 242 ~~ 243 (291)
.+
T Consensus 294 ~~ 295 (304)
T 2yd9_A 294 KA 295 (304)
T ss_dssp --
T ss_pred cc
Confidence 43
No 104
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Probab=99.92 E-value=8.3e-24 Score=157.35 Aligned_cols=200 Identities=20% Similarity=0.336 Sum_probs=134.8
Q ss_pred eeecceeeeecCCcEEEEEEecCCCC-CeeEEEECCeecCCCeeE--------eceEEe----------eccceEEEEEE
Q psy14540 6 IYKFIQQTLQPGPPVSLKCIATGNPT-PHISWKLDGYPLAGDRFV--------MGQYMS----------LHGDVISHVNI 66 (291)
Q Consensus 6 ~~~~~~~~v~~g~~v~l~C~~~~~~~-~~v~W~~~~~~~~~~~~~--------~~~~~~----------~~~~~~~~l~i 66 (291)
+..|....+.+|+++.|.|.+.+.+. +.+.|++++.......+. ...... .... ..|.|
T Consensus 4 v~~p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~--~~L~i 81 (231)
T 2pet_A 4 LSVPPLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLDSQ--GRLVL 81 (231)
T ss_dssp CCCCSEEEEETTCCEEECCCCBSCCSEEEEEEEEECTTCCCCEEEEEEEETTEEEEEECCCSCCSSCCEECTT--CCEEE
T ss_pred ccCCCcEEEEcCCCEEEecccCCCCCceEEEEEEeCCCceeEEEEeccccCCccccccccccccccccccCCC--ceEEE
Confidence 44677789999999999999998774 889999865432100000 001111 1111 23999
Q ss_pred eecCCCCCeEEEEEEeCCC-CceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCce-EEEEEeeCCCCCceeEEeEC
Q psy14540 67 SSVRVEDSGIYQCTATNRV-GSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRA-GVQCLVTKGDPPLTISWLKN 144 (291)
Q Consensus 67 ~~~~~~d~G~y~C~~~~~~-~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~l~C~~~~~~p~~~~~W~~~ 144 (291)
.+++.+|+|.|+|.+.+.. +.....+.|.|...+..| .....+....+.+|+.+ .|.|.+..+.|.+.+.|+++
T Consensus 82 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~----~~~~~~~~~~~~~g~~~~~l~C~~~~~~p~p~i~W~~~ 157 (231)
T 2pet_A 82 AEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEAT----EVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRN 157 (231)
T ss_dssp SSCCGGGCEEEEEEEECGGGCEEEEEEEEEEEBCCCCC----EEEECCSSCCTTCCSEEEEEEEEEEEEBSCCEEEEEET
T ss_pred cccCcccCceEEEEEEecCCCceEEEEEEEEEecCCCc----EEecCCcceeecCCCceEEEEEEeECcccCCEEEEEEC
Confidence 9999999999999999876 777888889998876543 22233344566789888 99999866889999999999
Q ss_pred CEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeee
Q psy14540 145 GLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASN 224 (291)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~ 224 (291)
+..+....... ............+.|.|.+. +.|.|.....+|.|.|+|.|.|
T Consensus 158 ~~~~~~~~~~~-------~~~~~~~~~~~~~~g~~~~~--------------------~~L~i~~~~~dd~g~Y~C~a~n 210 (231)
T 2pet_A 158 GQRLEVPVEMN-------PEGYMTSRTVREASGLLSLT--------------------STLYLRLRKDDRDASFHCAAHY 210 (231)
T ss_dssp TEECCCCSSCC-------SSEEEEEEEEECTTSCEEEE--------------------EEEEEECCGGGGGCEEEEEEEE
T ss_pred CccCccccccc-------cceeecceeEecCCCeEEEE--------------------EEEEEecchhhCCceEEEEEEc
Confidence 99886654100 00111222233456677663 4677776666779999999999
Q ss_pred C-----Ccc-CCceeEEEEe
Q psy14540 225 T-----VAS-DNHSSNLRVN 238 (291)
Q Consensus 225 ~-----~~~-~~~~~~l~v~ 238 (291)
. .+. .+..+.|.|+
T Consensus 211 ~~~~~~~~~~~s~~~~l~V~ 230 (231)
T 2pet_A 211 SLPEGRHGRLDSPTFHLTLH 230 (231)
T ss_dssp ECGGGCEEEEECCCEECCCC
T ss_pred CCcccccccccccceEEEEe
Confidence 4 344 5555555553
No 105
>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}
Probab=99.92 E-value=1.5e-23 Score=150.21 Aligned_cols=159 Identities=18% Similarity=0.223 Sum_probs=108.6
Q ss_pred CCCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEE
Q psy14540 1 SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCT 80 (291)
Q Consensus 1 s~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~ 80 (291)
.+|.|...|.. .+.+|++++|.|.+.+ +.+.+.|+|++.... .....|.|.+++.+|+|.|+|.
T Consensus 7 ~~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~W~k~g~~~~--------------~~~~~L~i~~v~~~D~G~Y~C~ 70 (184)
T 2gi7_A 7 PKPSLQALPSS-LVPLEKPVTLRCQGPP-GVDLYRLEKLSSSRY--------------QDQAVLFIPAMKRSLAGRYRCS 70 (184)
T ss_dssp CCCEEEEESCS-EEETTCCEEEEEECST-TCSEEEEEETTTCCE--------------ESSSEEEESSCCGGGCEEEEEE
T ss_pred CCCeEEeCCCc-cccCCCcEEEEEeCCC-CCCEEEEEECCcccc--------------CcccEEEECcCChhhCceEEEE
Confidence 36888888775 8999999999999886 678999999986510 0113488999999999999999
Q ss_pred EeCCCCc--eeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEec
Q psy14540 81 ATNRVGS--QTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRS 158 (291)
Q Consensus 81 ~~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~ 158 (291)
+.+..+. .+..+.|.|......|. .. ..+ ...+.+|+.++|.|.+ .+.+ +.+.|+++|..+.......
T Consensus 71 a~n~~g~~~~s~~~~l~V~~~~~~p~--i~--~~p-~~~v~~G~~v~l~C~~-~~~~-~~~~w~k~g~~~~~~~~~~--- 140 (184)
T 2gi7_A 71 YQNGSLWSLPSDQLELVATGVFAKPS--LS--AQP-GPAVSSGGDVTLQCQT-RYGF-DQFALYKEGDPAPYKNPER--- 140 (184)
T ss_dssp EEETTEEBCCCCCEEEEEESSSCCCE--EE--EEC-CCSSCCTTCEEEEEEC-SSCC-CEEEEEECCCCTTSCCCCE---
T ss_pred EEcCCCccCCCCCEEEEecCcCCCCE--EE--eCC-CceecCCCcEEEEEEc-CCCC-cEEEEEECCCcCcceecCC---
Confidence 9876642 34456677755432221 11 112 3456789999999997 4544 6999999998775422111
Q ss_pred cCCceEEEEEeeCCCCCceeEEEEEEecC
Q psy14540 159 SGEYTSSLSIATLSTGHSGNYTCVASNTV 187 (291)
Q Consensus 159 ~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 187 (291)
.....|.|.++..+|.|.|+|.+.|..
T Consensus 141 --~~~~~L~i~~v~~~D~G~Y~C~a~n~~ 167 (184)
T 2gi7_A 141 --WYRASFPIITVTAAHSGTYRCYSFSSR 167 (184)
T ss_dssp --EEEESSSEEEETTCCSEEEEEEEECTT
T ss_pred --CceEEEEEccCCccCCeEEEEEEEeCC
Confidence 113345566666666666666666643
No 106
>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*
Probab=99.91 E-value=7e-24 Score=155.79 Aligned_cols=190 Identities=16% Similarity=0.272 Sum_probs=120.5
Q ss_pred CcceeecceeeeecCCcEEEEEEecCCCCCeeEEEEC--CeecC-----CCee---EeceEEeeccceEEEEEEeecCCC
Q psy14540 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLD--GYPLA-----GDRF---VMGQYMSLHGDVISHVNISSVRVE 72 (291)
Q Consensus 3 p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~--~~~~~-----~~~~---~~~~~~~~~~~~~~~l~i~~~~~~ 72 (291)
|.+...| ...+.+|++++|.|.+.+.+.+.+.|+|. +.... .... ...+.........++|.|.+++.+
T Consensus 2 ~~v~~~~-~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~ 80 (213)
T 3mj8_L 2 YTLTQPP-LVSVALGQKATITCSGDKLSDVYVHWYQQKAGQAPVLVIYEDNRRPSGIPDHFSGSNSGNMATLTISKAQAG 80 (213)
T ss_dssp CCBBCCS-EEEEETTSCEEEEEECSSTTTSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGG
T ss_pred eeEEeCC-cEEEeCCCCEEEEEEcCCCCCceEEEEEECCCCCcEEEEEECCccCCCccCcEEEEecCCEEEEEECCCChh
Confidence 6677777 88999999999999999888899999982 22110 0000 000111111334577999999999
Q ss_pred CCeEEEEEEeCCCC---ceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCC-ceeEEeECCEec
Q psy14540 73 DSGIYQCTATNRVG---SQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPP-LTISWLKNGLPI 148 (291)
Q Consensus 73 d~G~y~C~~~~~~~---~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~-~~~~W~~~~~~~ 148 (291)
|+|.|+|.+.+..+ .....+.|.|...+..++ . ....+....+.+|+.++|.|.+....|+ +.+.|+++|..+
T Consensus 81 D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P--~-i~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l 157 (213)
T 3mj8_L 81 DEADYYCQSWDGTNSAWVFGSGTKVTVLGQPNAAP--S-VTLFPPSSEELKTNQATLVCMINGFYPADVAVTWEADGTPI 157 (213)
T ss_dssp GCEEEEEEEEETTTTEEEEBCCEEEEEECSCCBCC--E-EEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEE
T ss_pred hCEEEEEEeccCCcceeEEcCceEEEEeCCCCCCC--e-EEccCCCcccccCCcEEEEEEeeceeCCCeEEEEEcCCccc
Confidence 99999999998776 345667788875432111 1 1111222334489999999999544454 499999999988
Q ss_pred cCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCcc
Q psy14540 149 LSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVAS 228 (291)
Q Consensus 149 ~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~ 228 (291)
......... .. ..|.|.. ...|.|..+..+|+|.|+|.|.|..+.
T Consensus 158 ~~~~~~~~~--------------~~-~~~~~~~--------------------~s~L~i~~~~~~d~G~Y~C~a~n~~~~ 202 (213)
T 3mj8_L 158 TQGVKTTQP--------------SK-SDSKYMA--------------------TSYLTMTADAWKSRNTFICKVTHGGNT 202 (213)
T ss_dssp CTTEEECCC--------------EE-ETTEEEE--------------------EEEEEEESHHHHSCSCEEEEEEETTEE
T ss_pred CCCcccCCc--------------Cc-cCCcEEE--------------------EEEEEEeHHHcCCCCEEEEEEEECCcc
Confidence 543110000 00 1122221 245777777777888888888877654
Q ss_pred CCc
Q psy14540 229 DNH 231 (291)
Q Consensus 229 ~~~ 231 (291)
...
T Consensus 203 ~~~ 205 (213)
T 3mj8_L 203 VEK 205 (213)
T ss_dssp EEE
T ss_pred EEe
Confidence 433
No 107
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Probab=99.91 E-value=3.2e-24 Score=156.08 Aligned_cols=139 Identities=17% Similarity=0.252 Sum_probs=93.9
Q ss_pred ceeecceeeeecCCcEEEEEE-ecCCCC-CeeEEEECCeecC---CCeeEeceEEeeccceEEEEEEeecCCCCCeEEEE
Q psy14540 5 LIYKFIQQTLQPGPPVSLKCI-ATGNPT-PHISWKLDGYPLA---GDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQC 79 (291)
Q Consensus 5 ~~~~~~~~~v~~g~~v~l~C~-~~~~~~-~~v~W~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C 79 (291)
....+....+.+|+.+.|.|. +.+.|. +.+.|++++..+. ...... ... ...|.|.+++.+|+|.|+|
T Consensus 11 ~~~~~~~~~v~~G~~v~L~C~~~~~~p~~~~v~W~~~~~~~~~~~~~~~~~-----~~~--~~~L~i~~v~~~d~G~Y~C 83 (201)
T 3s97_C 11 PPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFV-----SQT--NGNLYIANVEASDKGNYSC 83 (201)
T ss_dssp CSSCCCCEEEETTCCEEECCCCCSEESSCCEEEEEESSTTCBCCCSSSEEE-----CTT--TCCEEESSCCGGGCEEEEE
T ss_pred CcCCCceEEEECCCCEEEeccccccCCCceEEEEEECCceeeeeeCCCeEE-----EcC--CCeEEECcCCcccCeEEEE
Confidence 334557788999999999999 777777 8999999987664 111111 111 1459999999999999999
Q ss_pred EEeCCCCceee---eeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCC
Q psy14540 80 TATNRVGSQTH---SADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSD 151 (291)
Q Consensus 80 ~~~~~~~~~~~---~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~ 151 (291)
.+.+..+.... .+.+.+.....................+.+|+.+.|.|.+ .+.|.+.+.|++++..+...
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~-~g~p~p~v~W~~~~~~~~~~ 157 (201)
T 3s97_C 84 FVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFA-LGNPVPDIRWRKVLEPMPST 157 (201)
T ss_dssp EEEEGGGTEEEECCCEEEEEECCSSCCCEEEEEEEECCCEEEETTCCEEEEEEE-EEESCCEEEEEETTBCCCTT
T ss_pred EEEecCCCcchhhcccceeeccccccCCCCCceEecCCceEEecCCcEEEEEEc-cCCCCCceEEEeCCCcCCCc
Confidence 99875544332 2333333221111111111122235778899999999999 68899999999999876543
No 108
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}
Probab=99.91 E-value=1.1e-23 Score=162.27 Aligned_cols=184 Identities=22% Similarity=0.442 Sum_probs=125.8
Q ss_pred CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCC---CeeEeceEEeeccceEEEEEEeecCCCCCeEEE
Q psy14540 2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAG---DRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQ 78 (291)
Q Consensus 2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~ 78 (291)
+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+.. .++.. .. . ..|.|.+++..|+|.|+
T Consensus 98 ~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~-----~~-~--~~L~i~~v~~~d~G~Y~ 169 (291)
T 2wim_A 98 KLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAM-----LA-N--NNLQILNINKSDEGIYR 169 (291)
T ss_dssp CCBCCSCCCSEEEETTSCEEECCCCBCSSCCEEEEECC----CBCCCSSEEE-----CT-T--SCEEETTCCGGGCEEEE
T ss_pred CcceEeCCCChhhcCCCCEEEEEEEccCCCCEEEEEECCccccccCCceEEE-----cc-C--CCEEEEecchhhCEEEE
Confidence 45666667777899999999999999888899999999877652 22211 11 1 24899999999999999
Q ss_pred EEEeCCCCce--eeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEE
Q psy14540 79 CTATNRVGSQ--THSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITI 156 (291)
Q Consensus 79 C~~~~~~~~~--~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~ 156 (291)
|.+.+..+.. ...+.+.+..+|... .........+.+|+.+.|.|.+ .+.|.+.+.|+++|..+....+...
T Consensus 170 C~~~n~~~~~~~~~~~~~~v~~~p~~~-----~~~~~~~~~~~~g~~~~l~C~~-~g~p~p~v~W~~~g~~~~~~~~~~~ 243 (291)
T 2wim_A 170 CEGRVEARGEIDFRDIIVIVNVPPAIS-----MPQKSFNATAERGEEMTFSCRA-SGSPEPAISWFRNGKLIEENEKYIL 243 (291)
T ss_dssp EEEEETTTTEEEEEEEEEEEEBCCCCB-----CSCSEEECCSSSCCEEEEECBC-CCBSCCEEEEEETTEECCCTTTEEE
T ss_pred EEEEECCCCeeEEeeEEEEeccCCccc-----cCcccccceecCCCeEEEEEEe-ecCCCCeEEEEECCEECcCCccEEE
Confidence 9998776443 345566666654221 1111113467789999999999 7889999999999998866544332
Q ss_pred eccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEE
Q psy14540 157 RSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLR 236 (291)
Q Consensus 157 ~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~ 236 (291)
.. ....|.|.++..+|+|.|+|.|.|..|....++.|.
T Consensus 244 ~~------------------------------------------~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~ 281 (291)
T 2wim_A 244 KG------------------------------------------SNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQ 281 (291)
T ss_dssp CS------------------------------------------TTCEEEEESCCSTTCEEEEEEEEETTEEEEEEEEEE
T ss_pred cC------------------------------------------CccEEEEeeCCcccCEEEEEEEEECCCceeeeEEEE
Confidence 21 123566677777777777777777777777777777
Q ss_pred EecCC
Q psy14540 237 VNVPP 241 (291)
Q Consensus 237 v~~~p 241 (291)
|..++
T Consensus 282 v~~~~ 286 (291)
T 2wim_A 282 VFVQH 286 (291)
T ss_dssp C----
T ss_pred EEEec
Confidence 76554
No 109
>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.91 E-value=4.1e-23 Score=148.54 Aligned_cols=135 Identities=16% Similarity=0.144 Sum_probs=94.1
Q ss_pred CCCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEE
Q psy14540 1 SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCT 80 (291)
Q Consensus 1 s~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~ 80 (291)
.+|.|...|.. .+.+|++++|.|.+.+ +...+.|+|++..+...... .........|.|.+++.+|+|.|+|.
T Consensus 3 ~~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~-----~~~~~~~~~L~I~~v~~~D~G~Y~C~ 75 (188)
T 1oll_A 3 PKPFIWAEPHF-MVPKEKQVTICCQGNY-GAVEYQLHFEGSLFAVDRPK-----PPERINKVKFYIPDMNSRMAGQYSCI 75 (188)
T ss_dssp CCCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTEEEEEECCS-----SCTTCCEEEEEESSCCGGGCEEEEEE
T ss_pred CCCEEEeecCC-cCCCCCCEEEEEecCC-CCCEEEEEECCCcccccccc-----cCCCcceeEEEeCcCCcccCeEEEEE
Confidence 36888888877 8999999999999875 45689999999865410000 01122346699999999999999999
Q ss_pred EeCCCC--ceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEecc
Q psy14540 81 ATNRVG--SQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPIL 149 (291)
Q Consensus 81 ~~~~~~--~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~ 149 (291)
+.+..+ ..+..+.|.|......| ... ..+ ...+.+|+.++|.|.+ .+ +.+.+.|+++|..+.
T Consensus 76 ~~~~~~~~~~s~~~~l~V~~~~~~p--~i~--~~p-~~~v~~G~~v~L~C~~-~~-~~~~~~w~k~g~~~~ 139 (188)
T 1oll_A 76 YRVGELWSEPSNLLDLVVTEMYDTP--TLS--VHP-GPEVISGEKVTFYCRL-DT-ATSMFLLLKEGRSSH 139 (188)
T ss_dssp EEETTEECCCCCCEEEEEESCSCCC--EEE--EES-CSEEETTCEEEEEEEC-SS-SCSEEEEEEESSSCE
T ss_pred ecCCCCCCCCCCceEEEecccCCCC--eEE--ECC-CCccccCCEEEEEEEc-CC-CCCEEEEEECCcccc
Confidence 986543 23455677776543222 111 112 2457899999999997 44 456899999987653
No 110
>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}
Probab=99.91 E-value=5.6e-24 Score=165.83 Aligned_cols=174 Identities=20% Similarity=0.325 Sum_probs=116.6
Q ss_pred cceeeeecCCcEEEEEEecC----------CCCCeeEEEECCeecCC-CeeEeceEEeeccceEEEEEEeecCCCCCeEE
Q psy14540 9 FIQQTLQPGPPVSLKCIATG----------NPTPHISWKLDGYPLAG-DRFVMGQYMSLHGDVISHVNISSVRVEDSGIY 77 (291)
Q Consensus 9 ~~~~~v~~g~~v~l~C~~~~----------~~~~~v~W~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y 77 (291)
+....+.+|+.+.|.|.+.+ .|.+.+.|++++..+.. .++.. ......+.|.|.+++..|+|.|
T Consensus 105 ~~~~~~~~g~~~~l~c~~~~~~l~c~~~~~~p~~~i~W~~~~~~~~~~~~~~~-----~~~~~~~~L~i~~~~~~d~G~Y 179 (317)
T 2y25_A 105 VCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKT-----GVTGEQIWLQINEPTPNDKGKY 179 (317)
T ss_dssp HHHHHHTCBCCCEEEECSSEEEEEEEBSSCCSSCEEEEEESSSBCCCCSSEEE-----EECSSEEEEEEESCCGGGCEEE
T ss_pred CCceecccCCCeEEEeeccccEEEEEeccCCCCcEEEEEECCEECCCCCCeEE-----eccCCEEEEEECcCCcccCeeE
Confidence 34455678888888888766 68899999999988773 33222 2233456799999999999999
Q ss_pred EEEEeCCCCceeeeeeEEEEcC---------------CCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEe
Q psy14540 78 QCTATNRVGSQTHSADMRVYDA---------------PGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWL 142 (291)
Q Consensus 78 ~C~~~~~~~~~~~~~~l~v~~~---------------~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~ 142 (291)
+|.+.+..+.....+.+.+... ... .........+....+.+|+.+.|.|.+ .+.|.+.+.|+
T Consensus 180 ~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~~v~~g~~~~l~C~~-~g~p~p~i~W~ 257 (317)
T 2y25_A 180 VMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEK-NRARVLGGLPDVVTIQEGKALNLTCNV-WGDPPPEVSWL 257 (317)
T ss_dssp EEEEECSSCEEEEEEEECHHHHHHHHHHHHHHHHHHHHTT-TSCEEEEBCCSEEEEETTSBBCEEEEE-ECSSCCEEEEE
T ss_pred EEEEEeCCceEEEEEEEeeeeccccchhhcccCCcccCcC-CCCcccccCCccEEEEcCCEEEEEEEE-ecCCCCEEEEE
Confidence 9999998887776666654310 000 001122223445678899999999999 68999999999
Q ss_pred ECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCC
Q psy14540 143 KNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVAS 189 (291)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 189 (291)
+++..+....+..+.........|.|..+..+|.|.|+|.|.|..|.
T Consensus 258 ~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~ 304 (317)
T 2y25_A 258 KNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGS 304 (317)
T ss_dssp ESSSEECCCSSEEECCBTTTEEEEEEBSCCSTTCEEEEEEEEETTEE
T ss_pred ECCEeCCCCCcEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEeCCCe
Confidence 99998877666555433223344555555555554444444444443
No 111
>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*
Probab=99.91 E-value=7.3e-23 Score=150.31 Aligned_cols=187 Identities=19% Similarity=0.264 Sum_probs=125.4
Q ss_pred CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECC--eecC-------------CCeeEeceEEeeccceEEEEEE
Q psy14540 2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDG--YPLA-------------GDRFVMGQYMSLHGDVISHVNI 66 (291)
Q Consensus 2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~--~~~~-------------~~~~~~~~~~~~~~~~~~~l~i 66 (291)
.|.|...|....+.+|++++|.|.+.+.+.+.+.|+|.. .... ..++.. ......++|.|
T Consensus 1 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~-----~~~~~~~~L~I 75 (213)
T 3r06_A 1 DIQMTQSPSSLPASLGDRVTINCQASQDISNYLNWYQQKPGKAPKLLIYYTNKLADGVPSRFSG-----SGSGRDSSFTI 75 (213)
T ss_dssp CCCEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEE-----EEETTEEEEEE
T ss_pred CCeeEeCCCEEEecCCCcEEEEEEeCCCcCceEEEEEECCCCCcEEEEEEcCcCCCCCCCcEEE-----eccCCEEEEEE
Confidence 367778888899999999999999998888899999832 1110 111111 12334568999
Q ss_pred eecCCCCCeEEEEEEeCCCC-ceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCC-CceeEEeEC
Q psy14540 67 SSVRVEDSGIYQCTATNRVG-SQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDP-PLTISWLKN 144 (291)
Q Consensus 67 ~~~~~~d~G~y~C~~~~~~~-~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p-~~~~~W~~~ 144 (291)
.+++.+|+|.|+|.+.+..+ .......|.|......| ... ..+....+..|+.++|.|.+..+.| .+.+.|+++
T Consensus 76 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p---~v~-~~~~~~~~~~~~~v~l~C~~~g~~p~~~~v~W~k~ 151 (213)
T 3r06_A 76 SSLESEDIGSYYCQQYYNYPWTFGPGTKLEIKRADAKP---TVS-IFPPSSEQLGTGSATLVCFVNNFYPKDINVKWKVD 151 (213)
T ss_dssp SSCCGGGCSEEEEEECSSSSCEECCCEEEEECCCCBCC---EEE-EECCCHHHHTTTEEEEEEEEEEEBSSCEEEEEEET
T ss_pred CCCCcccCEEEEEecccCCceEEcCCceEEEeccCCCc---eee-eeCCCceecCCCCcEEEEEEeeecCCceEEEEEEC
Confidence 99999999999999987643 23445567774333222 111 1122233456888999999954444 458999999
Q ss_pred CEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeee
Q psy14540 145 GLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASN 224 (291)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~ 224 (291)
|..+.... +........+.|.|.+ ...|.|.....+|+|.|+|.|.|
T Consensus 152 g~~l~~~~-------------~~~~~~~~~~~g~~~~--------------------~s~l~i~~~~~~d~g~YtC~v~n 198 (213)
T 3r06_A 152 GSEKRDGV-------------LQSVTDQDSKDSTYSL--------------------SSTLSLTKADYERHNLYTCEVTH 198 (213)
T ss_dssp TEEECTTE-------------EEEECCCCTTTCCEEE--------------------EEEEEEEHHHHHTCCEEEEEEEE
T ss_pred CcccCCce-------------EeccCceeCCCCcEEE--------------------EEEEEeCHHHhccCCeEEEEEEe
Confidence 98875421 1222233445566665 34677888888899999999998
Q ss_pred CCccCC
Q psy14540 225 TVASDN 230 (291)
Q Consensus 225 ~~~~~~ 230 (291)
......
T Consensus 199 ~~~~~~ 204 (213)
T 3r06_A 199 KTSTAA 204 (213)
T ss_dssp TTCSSC
T ss_pred cccCcc
Confidence 764433
No 112
>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*
Probab=99.91 E-value=1.5e-23 Score=154.03 Aligned_cols=166 Identities=17% Similarity=0.187 Sum_probs=108.0
Q ss_pred CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEE--EEEEeecCCCCCeEEEE
Q psy14540 2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVIS--HVNISSVRVEDSGIYQC 79 (291)
Q Consensus 2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~i~~~~~~d~G~y~C 79 (291)
+|.|...|. ..+.+|++++|.|.+.+ +.+.+.|+|+|..+....... ....... .|.|.+++.+|+|.|+|
T Consensus 9 ~P~i~~~p~-~~v~~G~~vtL~C~~~~-~~~~~~W~k~g~~~~~~~~~~-----~~~~~~~~~~L~I~~v~~~D~G~Y~C 81 (218)
T 1uct_A 9 MPFISAKSS-PVIPLDGSVKIQCQAIR-EAYLTQLMIIKNSTYREIGRR-----LKFWNETDPEFVIDHMDANKAGRYQC 81 (218)
T ss_dssp CCCEEESSC-SEEETTCCEEEEECCCT-TCSEEEEEEEETTEEEECSEE-----CC----CCCEEEECSCCGGGCEEEEE
T ss_pred CCEEEecCC-CccCCCCCEEEEEEcCC-CCCEEEEEECCCccccccccc-----CCCCcceeeEEEEcccccccCEEEEE
Confidence 678888777 57999999999999876 678899999886543111000 0011113 69999999999999999
Q ss_pred EEeCCCCc--eeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEe
Q psy14540 80 TATNRVGS--QTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIR 157 (291)
Q Consensus 80 ~~~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~ 157 (291)
.+.+..+. .+..+.|.|......| . ....+ ...+.+|+.++|.|.. .+.|.+.+.|+|+|..+... ..
T Consensus 82 ~a~n~~~~~~~s~~~~l~V~~~~~~P--~--i~~~p-~~~v~~G~~v~L~C~~-~~~~~~~~~W~k~g~~~~~~--~~-- 151 (218)
T 1uct_A 82 QYRIGHYRFRYSDTLELVVTGLYGKP--F--LSADR-GLVLMPGENISLTCSS-AHIPFDRFSLAKEGELSLPQ--HQ-- 151 (218)
T ss_dssp EEEETTTEEEECCCEEEEEECSSCCC--E--EEESS-CSEECTTCCCEEEEEC-SSSCCSEEEEEETTCSSCCS--EE--
T ss_pred EEEcCCCceeecCCEEEEEcCcccCC--E--EEeCC-CCccCCCCCEEEEEeC-CCCCCCEEEEEECCCccccc--cc--
Confidence 99986543 3345667776533222 1 11122 3467899999999966 56677899999999876431 11
Q ss_pred ccCCceEEEEEeeCCCCCceeEEEEEEe
Q psy14540 158 SSGEYTSSLSIATLSTGHSGNYTCVASN 185 (291)
Q Consensus 158 ~~~~~~~~l~i~~~~~~d~g~y~C~~~~ 185 (291)
.......|.|.++..+|+|.|+|.+.|
T Consensus 152 -~~~~~~~L~I~~v~~~D~G~Y~C~a~n 178 (218)
T 1uct_A 152 -SGEHPANFSLGPVDLNVSGIYRCYGWY 178 (218)
T ss_dssp -ECSSSEEEECCSCCGGGCEEEEEEEEC
T ss_pred -CCCccCEEEEccCCcccCEEEEEEEEc
Confidence 111234455555555555555555554
No 113
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A
Probab=99.91 E-value=1.7e-23 Score=155.16 Aligned_cols=183 Identities=13% Similarity=0.151 Sum_probs=110.4
Q ss_pred ceeeeecCCcEEEEEEecCCCC---CeeEEEECCeecC-----CCe---------eEece--EEeeccceEEEEEEeecC
Q psy14540 10 IQQTLQPGPPVSLKCIATGNPT---PHISWKLDGYPLA-----GDR---------FVMGQ--YMSLHGDVISHVNISSVR 70 (291)
Q Consensus 10 ~~~~v~~g~~v~l~C~~~~~~~---~~v~W~~~~~~~~-----~~~---------~~~~~--~~~~~~~~~~~l~i~~~~ 70 (291)
.++.+.+|++++|.|.+.+.+. ..|.|+|++.... ++. +.... .......+.++|.|.+++
T Consensus 12 ~pV~v~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~ 91 (226)
T 4f80_A 12 GPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAGKAALRIHNVT 91 (226)
T ss_dssp SCEEEETTSCEEEEEEEESCCCCTTSEEEEEETTTCCEEEEEETTEECGGGSCTTTTTTEEEECTTGGGTEEEEEESSCC
T ss_pred CCEEEEcCCcEEEEEEEECCCCCCceEEEEEECCCCceEEEEeCCeEcccccCccccceEEEecccccCCeEEEEEeeCc
Confidence 4477899999999999976443 3699999764211 100 00000 001112345789999999
Q ss_pred CCCCeEEEEEEeCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccC
Q psy14540 71 VEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILS 150 (291)
Q Consensus 71 ~~d~G~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~ 150 (291)
.+|+|.|+|.+.+..+.....+.+.+..... .......+.+|+.+.|.|.+..+.|.|.+.|++++..+..
T Consensus 92 ~~D~G~Y~C~a~n~~~~~~~~v~~~~~~~~~---------~~~~~~~~~~g~~v~l~c~~~g~~P~p~i~W~k~~~~~~~ 162 (226)
T 4f80_A 92 ASDSGKYLCYFQDGDFYEKALVELKVAALGS---------DLHVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIP 162 (226)
T ss_dssp GGGCEEEEEEEEETTEEEEEEEEEEEEBCCC---------CCEEEEEEEETTEEEEEEEEEEEBSCCEEEEECTTSCBCC
T ss_pred hHHCeeEEEEEECCCcEEEEEEEEeecccee---------cccceeeeccCCceeeEEEeccCCCCCEEEEEECCceEcC
Confidence 9999999999998776665555555443321 1122356778999999999965579999999986544322
Q ss_pred CCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCC
Q psy14540 151 DAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDN 230 (291)
Q Consensus 151 ~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~ 230 (291)
........ +..|.|. .+.+..+..+|+|.|+|.|.|..+...
T Consensus 163 ~~~~~~~~---------------~~~g~~~-----------------------v~s~l~v~~~d~G~YtC~a~N~~g~~~ 204 (226)
T 4f80_A 163 TVEAPVVA---------------DGVGLYA-----------------------VAASVIMRGSSGEGVSCTIRSSLLGLE 204 (226)
T ss_dssp CEECCCEE---------------CTTSCEE-----------------------EEEEEEECC----CEEEEEEETTTTEE
T ss_pred CCceEEEE---------------CCCCcEE-----------------------EEEEEEechhcCcEEEEEEEeCCCCeE
Confidence 21111111 1112221 122334456677777777777777777
Q ss_pred ceeEEEEec
Q psy14540 231 HSSNLRVNV 239 (291)
Q Consensus 231 ~~~~l~v~~ 239 (291)
.+..|.|..
T Consensus 205 ~~~~v~v~e 213 (226)
T 4f80_A 205 KTASISIAD 213 (226)
T ss_dssp EEEEECCCT
T ss_pred EEEEEEECC
Confidence 777777754
No 114
>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}
Probab=99.91 E-value=1.4e-22 Score=167.65 Aligned_cols=229 Identities=15% Similarity=0.239 Sum_probs=136.7
Q ss_pred cCCcEEEEEEecCC-CCC-eeEEEECCeecCCCeeEeceEEeecc--ceEEEEEEeecCCCCCeEEEEEEeCCCCceeee
Q psy14540 16 PGPPVSLKCIATGN-PTP-HISWKLDGYPLAGDRFVMGQYMSLHG--DVISHVNISSVRVEDSGIYQCTATNRVGSQTHS 91 (291)
Q Consensus 16 ~g~~v~l~C~~~~~-~~~-~v~W~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~ 91 (291)
.|+.++|.|.+.+. |.+ .|+|++++..... ..........+ ...+.|.|...... .|.|+|.+.+..+.....
T Consensus 149 ~~~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~--~~~~~~~~~~g~~~~~s~L~i~~~~~~-~g~ytC~v~n~~~~~~~~ 225 (512)
T 1zvo_C 149 DNSPVVLACLITGYHPTSVTVTWYMGTQSQPQ--RTFPEIQRRDSYYMTSSQLSTPLQQWR-QGEYKCVVQHTASKSKKE 225 (512)
T ss_pred CCCeEEEEEEEEeeecCceEEEEEcCcccCce--EecCceecCCCCEEEEEEEEEcHHHcC-CceEEEEEEeCCCCceEE
Confidence 46899999999884 654 8999996543210 00000000111 23356889888877 899999999887764443
Q ss_pred e-----------eEEEEcCCC----------------------------------------------CCcccceeccCCc
Q psy14540 92 A-----------DMRVYDAPG----------------------------------------------QPQDVKLVTSNSR 114 (291)
Q Consensus 92 ~-----------~l~v~~~~~----------------------------------------------~~~~~~~~~~~~~ 114 (291)
. .+.+..+|. ...........+.
T Consensus 226 ~~~~~~~~~~~~~v~l~~pp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~p~v~~~~p~ 305 (512)
T 1zvo_C 226 IFRWPESPKAQASSVPTAQPQAEGSLAKATTAPATTRNTGRGGEEKKKEKEKEEQEERETKTPECPSHTQPLGVYLLTPA 305 (512)
T ss_pred EecCCCCCCcCCEEEEeCCCchhccccccccCchhhccCcccccceeccCCcccccccCcccccCCCCCCCCEEEEECCC
Confidence 3 233332221 0000111122223
Q ss_pred ceeecCCCceEEEEEeeCCCC-CceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCc
Q psy14540 115 SIKVHSGDRAGVQCLVTKGDP-PLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHS 193 (291)
Q Consensus 115 ~~~~~~g~~~~l~C~~~~~~p-~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~ 193 (291)
...+.+|+.++|.|.+.+.+| ...++|+++|..+..... ......+..|.|..
T Consensus 306 ~~~~~~g~~~~L~C~v~g~~P~~~~i~W~k~g~~~~~~~~--------------~~~~~~~~~gt~~~------------ 359 (512)
T 1zvo_C 306 VQDLWLRDKATFTCFVVGSDLKDAHLTWEVAGKVPTGGVE--------------EGLLERHSNGSQSQ------------ 359 (512)
T ss_pred hHHhccCCceEEEEEEeceECCCeEEEEEECCEeccCcee--------------ccceecCCCCeEEE------------
Confidence 334567999999999954445 359999999987541100 00111123344432
Q ss_pred eEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEE------ecCCCCCCCCcccccCCceEE-EEEEeecC
Q psy14540 194 SNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRV------NVPPHIGPFTFGELMEGVRTQ-VACVVQSG 266 (291)
Q Consensus 194 ~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v------~~~p~~~~~~~~~~~~g~~v~-l~C~~~~~ 266 (291)
.+.|.|.....+|+|.|+|.|.|..+... ...+.. ..+|.+...+... .|+.+. |.|.+.+.
T Consensus 360 --------~s~L~i~~~~~~d~g~y~C~a~n~~~~~~-~~~~~~~~~~~~~~~p~v~~~~~~~--~~~~~~~L~C~~~g~ 428 (512)
T 1zvo_C 360 --------HSRLTLPRSLWNAGTSVTCTLNHPSLPPQ-RLMALREPAAQAPVKLSLNLLASSD--PPEAASWLLCEVSGF 428 (512)
T ss_pred --------EEEEEEchHHhcCCCeEEEEEEeCCCCCC-ceeEEeecCCCCCCCCEEEEEccCc--CCCCceEEEEEEeee
Confidence 34688888888899999999998875443 222222 2345443332222 789999 99999333
Q ss_pred CCC-ceEEEEECCEEccCC
Q psy14540 267 DLP-LSLQWYKNGLAISQP 284 (291)
Q Consensus 267 ~p~-~~v~W~~~~~~l~~~ 284 (291)
+|+ ..|.|+|||.++...
T Consensus 429 ~P~~i~v~W~k~g~~~~~~ 447 (512)
T 1zvo_C 429 SPPNILLMWLEDQREVNTS 447 (512)
T ss_pred CCCCcEEEEEECCeECcCc
Confidence 554 479999999998654
No 115
>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1
Probab=99.91 E-value=7.7e-24 Score=172.34 Aligned_cols=178 Identities=16% Similarity=0.254 Sum_probs=116.8
Q ss_pred CCcceeecceeeeecCCcEEEEEEecC-CCCC-eeEEEECCeecCCCeeEeceEEeeccc---eEEEEEEeecCCCCCeE
Q psy14540 2 HPQLIYKFIQQTLQPGPPVSLKCIATG-NPTP-HISWKLDGYPLAGDRFVMGQYMSLHGD---VISHVNISSVRVEDSGI 76 (291)
Q Consensus 2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~-~~~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~G~ 76 (291)
+|.+...+....+.+|+.+.|.|.+.+ .|.+ .+.|+++|..+..............+. ..+.|.|.+++.+|+|.
T Consensus 116 ~P~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~ 195 (438)
T 1qgc_4 116 APTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNS 195 (438)
T ss_dssp CCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEEEEECCCTTTCCEEEEEEEEEEHHHHHTCCE
T ss_pred CCEEEecCCChhhccCCceEEEEEEccccCCCcEEEEEECCEEcCCCceeccccccCCCCcEEEEEEEEEeCcccCCCCe
Confidence 455555443334456889999999987 6666 899999999887541111111101111 23679999999999999
Q ss_pred EEEEEeCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCC--CceeEEeEC--CEecc---
Q psy14540 77 YQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDP--PLTISWLKN--GLPIL--- 149 (291)
Q Consensus 77 y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p--~~~~~W~~~--~~~~~--- 149 (291)
|+|.+.+..+.... .+.+...... ... ..+....+.+|+.++|.|.+ .+.| .+.+.|+++ +..+.
T Consensus 196 Y~C~a~n~~~~~~~--~~~~~~~~~~----~~~-~~~~~~~v~~G~~v~L~C~~-~g~p~~~~~v~W~k~~~g~~~~~~~ 267 (438)
T 1qgc_4 196 YTCEATHKTSTSPI--VKSFNRNECE----VML-VESGGGLVKPGGSLKLSCTA-SGFIFNRCAMSWVRQTPEKRLEWVA 267 (438)
T ss_dssp EEEEEEETTCSSCE--EEEEETTC-C----CEE-EEECCEEECTTCCEEEEEEE-ESSCGGGSCEEEEEEETTTEEEEEE
T ss_pred EEEEEEecccCCce--ecccccccce----eEE-ecCCceEEecCCcEEEEEEE-cccccCCcEEEEEECCCCCCcEEEE
Confidence 99999987766432 3333322111 111 12344678899999999999 5766 679999996 43221
Q ss_pred --------------CCCceEEecc-CCceEEEEEeeCCCCCceeEEEEEEecC
Q psy14540 150 --------------SDAEITIRSS-GEYTSSLSIATLSTGHSGNYTCVASNTV 187 (291)
Q Consensus 150 --------------~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 187 (291)
...++..... ......|.|.++..+|+|.|+|.+.|..
T Consensus 268 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~ 320 (438)
T 1qgc_4 268 TISSGGTYTYYPDSVKGRFTISRDNAKNTLYLQMSSLRSADTAMYYCVRREDG 320 (438)
T ss_dssp EECTTSCCEECCGGGTTTEEEEEETTTTEEEEEECSCCGGGCCEEEEEECCSS
T ss_pred EEeecCCceecCcccCCcEEEEeecCCCeEEEEECCCChhhCEEEEEEEEccC
Confidence 1233333322 2335689999999999999999999843
No 116
>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A
Probab=99.91 E-value=1.4e-22 Score=147.37 Aligned_cols=137 Identities=15% Similarity=0.212 Sum_probs=95.1
Q ss_pred CCCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEE
Q psy14540 1 SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCT 80 (291)
Q Consensus 1 s~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~ 80 (291)
.+|.|...|. ..+.+|++++|.|.+. .+.+.+.|+|+|..+...... . ..........|.|.+++.+|+|.|+|.
T Consensus 7 ~~P~i~~~p~-~~v~~G~~v~L~C~~~-~~~~~~~w~k~g~~~~~~~~~-~--~~~~~~~~~~l~I~~v~~~D~G~Y~C~ 81 (201)
T 1nkr_A 7 RKPSLLAHPG-PLVKSEETVILQCWSD-VMFEHFLLHREGMFNDTLRLI-G--EHHDGVSKANFSISRMTQDLAGTYRCY 81 (201)
T ss_dssp CCCEEEEESC-SEEETTCCEEEEEEES-SCCSEEEEEEESSSCEEEEEE-C--EEETTEEEEEEEESSCCGGGCEEEEEE
T ss_pred CCCeEEEEcC-CccCCCCcEEEEEecc-CCCCEEEEEECCCcCCcceee-e--ecCCCCceEEEEeccCCcccCeEEEEe
Confidence 3678887776 6789999999999997 467789999998765421110 0 001123346799999999999999999
Q ss_pred EeCCC-----CceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEecc
Q psy14540 81 ATNRV-----GSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPIL 149 (291)
Q Consensus 81 ~~~~~-----~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~ 149 (291)
+.+.. ...+..+.|.|......|. .. ..+. ..+.+|+.++|.|.+ .+ +.+.+.|+|+|..+.
T Consensus 82 a~~~~~~~~~~~~s~~~~l~V~~~~~~p~--i~--~~p~-~~v~~G~~v~L~C~~-~~-~~~~~~w~k~g~~~~ 148 (201)
T 1nkr_A 82 GSVTHSPYQVSAPSDPLDIVIIGLYEKPS--LS--AQPG-PTVLAGENVTLSCSS-RS-SYDMYHLSREGEAHE 148 (201)
T ss_dssp EEBTTBTTCCCCCCCCEEEEEECSSCCCE--EE--EESC-SEECTTCEEEEEEEE-SS-CCSEEEEEETTCSSC
T ss_pred EecCCCCccccCCCCCEEEEeeccCCCCc--ee--cCCC-CccCCCCeEEEEEeC-CC-CCceEEEEECCcccC
Confidence 97542 2234566777776542221 11 1122 367899999999998 44 567899999997664
No 117
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A
Probab=99.91 E-value=1.7e-23 Score=161.07 Aligned_cols=181 Identities=22% Similarity=0.393 Sum_probs=127.2
Q ss_pred CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCC---eeEeceEEeeccceEEEEEEeecCCCCCeEEE
Q psy14540 2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGD---RFVMGQYMSLHGDVISHVNISSVRVEDSGIYQ 78 (291)
Q Consensus 2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~ 78 (291)
+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+... ++.. .. . ..|.|.+++..|+|.|+
T Consensus 100 ~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~-----~~-~--~~L~i~~~~~~d~G~Y~ 171 (291)
T 1qz1_A 100 KLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIV-----LS-N--NYLQIRGIKKTDEGTYR 171 (291)
T ss_dssp CSEEEECCSSEEEETTSCEEECCEEECSSCCEEEEEETTSCSSTTCCTTEEE-----CT-T--SCEEETTCCGGGCEEEE
T ss_pred cccccCCCCcccccCCCeEEEEEEeccCCCCEEEEEECCEEcccCCCceEEE-----cc-C--CcEEEccCccccCeEEE
Confidence 566777777888999999999999999888999999999876521 1111 11 1 24899999999999999
Q ss_pred EEEeCCCCc--eeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCC----
Q psy14540 79 CTATNRVGS--QTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDA---- 152 (291)
Q Consensus 79 C~~~~~~~~--~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~---- 152 (291)
|.+.+..+. ....+.+.|..+|. ...........+.+|+.+.|.|.+ .+.|.+.+.|++++..+....
T Consensus 172 C~a~n~~~~~~~~~~~~l~v~~~p~-----~~~~~~~~~~~~~~g~~v~l~C~~-~g~p~p~i~W~~~g~~~~~~~~~~~ 245 (291)
T 1qz1_A 172 CEGRILARGEINFKDIQVIVNVPPT-----VQARQSIVNATANLGQSVTLVCDA-DGFPEPTMSWTKDGEPIENEEEDDE 245 (291)
T ss_dssp EEEEEGGGTEEEEEEEEEEEEEEEE-----EEESCSEEEEETTSCCCEEEEEEE-EEESCCEEEEEETTEECCCC--CCS
T ss_pred EEEEecCCCceeeEEEEEEEecCCc-----ccccccccccccccCceEEEEEEE-EEeCCCcEEEEECCEECcCCCCCCc
Confidence 999875433 23455666654431 111112234567899999999999 688999999999998876543
Q ss_pred ceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCce
Q psy14540 153 EITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHS 232 (291)
Q Consensus 153 ~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~ 232 (291)
+.... .....|.|.++..+|+|.|+|.|.|..|..+..
T Consensus 246 ~~~~~------------------------------------------~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~ 283 (291)
T 1qz1_A 246 KHIFS------------------------------------------DDSSELTIRNVDKNDEAEYVCIAENKAGEQDAS 283 (291)
T ss_dssp SEEEC------------------------------------------TTSCEEEECSCCGGGCEEEEEEEEETTEEEEEE
T ss_pred ceEEc------------------------------------------CCCcEEEEEecChhcCEEEEEEEEeCCCceEEE
Confidence 11111 113456777777777777777777777776666
Q ss_pred eEEEEe
Q psy14540 233 SNLRVN 238 (291)
Q Consensus 233 ~~l~v~ 238 (291)
+.|.|.
T Consensus 284 ~~l~V~ 289 (291)
T 1qz1_A 284 IHLKVF 289 (291)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 666664
No 118
>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...
Probab=99.91 E-value=1.8e-23 Score=153.63 Aligned_cols=191 Identities=19% Similarity=0.274 Sum_probs=121.4
Q ss_pred cceeecceeeeecCCcEEEEEEecCCCCCeeEEEECC--eec----------C---CCeeEeceEEeeccceEEEEEEee
Q psy14540 4 QLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDG--YPL----------A---GDRFVMGQYMSLHGDVISHVNISS 68 (291)
Q Consensus 4 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~--~~~----------~---~~~~~~~~~~~~~~~~~~~l~i~~ 68 (291)
.++..|..+.+.+|+++.|.|.+.+.+.+.+.|++++ ..+ . ..++.. ......++|.|.+
T Consensus 3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~-----~~~~~~~~L~I~~ 77 (213)
T 3d9a_L 3 VLTQSPATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSG-----SGSGTDFTLSINS 77 (213)
T ss_dssp CEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEE-----EEETTEEEEEESS
T ss_pred eEEeCCccEEEeCCCcEEEEEECCCCCCCCEEEEEeCCCCCcEEEEEEcccccccccccEEE-----EcCCCEEEEEECC
Confidence 3566688889999999999999998888889999853 211 0 112211 1233446899999
Q ss_pred cCCCCCeEEEEEEeCCCCce-eeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCc-eeEEeECCE
Q psy14540 69 VRVEDSGIYQCTATNRVGSQ-THSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPL-TISWLKNGL 146 (291)
Q Consensus 69 ~~~~d~G~y~C~~~~~~~~~-~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~~~~ 146 (291)
++.+|+|.|+|.+.+..+.. .....+.|......| ......+. ....+|+.++|.|.+..+.|.+ .+.|+++|.
T Consensus 78 v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p---~v~~~~~~-~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~ 153 (213)
T 3d9a_L 78 VETEDFGMYFCQQSNSWPYTFGGGTKLEIKRADAAP---TVSIFPPS-SEQLTSGGASVVCFLNNFYPKDINVKWKIDGS 153 (213)
T ss_dssp CCGGGCEEEEEEECSSSSCEECCCEEEEECCCCBCC---EEEEECCC-HHHHHTTEEEEEEEEEEEBSSCCEEEEEETTE
T ss_pred CChhhCEEEEEeeecCCcceeCCCEEEEEecCCCCc---eeEeECCC-hhhcCCCcEEEEEEEeeecCCceEEEEEcCCC
Confidence 99999999999999776542 334467775533222 11111122 2234788999999995446665 899999999
Q ss_pred eccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCC
Q psy14540 147 PILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTV 226 (291)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~ 226 (291)
.+....... ........|.|.. .+.|.|.++..+|+|.|+|.|.|..
T Consensus 154 ~~~~~~~~~-------------~~~~~~~~~~~~~--------------------~s~L~i~~~~~~d~G~Y~C~a~n~~ 200 (213)
T 3d9a_L 154 ERQNGVLNS-------------WTDQDSKDSTYSM--------------------SSTLTLTKDEYERHNSYTCEATHKT 200 (213)
T ss_dssp EECTTEEEE-------------ECCCCTTTCCEEE--------------------EEEEEEEHHHHHHCCEEEEEEECTT
T ss_pred cCcceeeec-------------CCCccCCCCCEEE--------------------EEEEEEeccccCCCCEEEEEEEEcc
Confidence 876441111 1111222333322 2467777777777777777777776
Q ss_pred ccCCceeEEE
Q psy14540 227 ASDNHSSNLR 236 (291)
Q Consensus 227 ~~~~~~~~l~ 236 (291)
........+.
T Consensus 201 ~~~~~~~~i~ 210 (213)
T 3d9a_L 201 STSPIVKSFN 210 (213)
T ss_dssp CSSCEEEEEE
T ss_pred CCCceEEEec
Confidence 5545444443
No 119
>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*
Probab=99.91 E-value=1.9e-22 Score=150.59 Aligned_cols=188 Identities=16% Similarity=0.226 Sum_probs=126.2
Q ss_pred CcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECC--eecC-------------CCeeEeceEEeeccceEEEEEEe
Q psy14540 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDG--YPLA-------------GDRFVMGQYMSLHGDVISHVNIS 67 (291)
Q Consensus 3 p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~--~~~~-------------~~~~~~~~~~~~~~~~~~~l~i~ 67 (291)
+.+...|....+.+|++++|.|.+.+.+.+.+.|++.. .... ..++.. ......++|.|.
T Consensus 25 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~-----~~~~~~~~L~I~ 99 (237)
T 3sob_L 25 IQMTQSPSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSG-----SGSGTDFTLTIS 99 (237)
T ss_dssp CCEEEECSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEE-----EEETTEEEEEES
T ss_pred ceEEeCCCeEEEeCCCcEEEEEecCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCcEEE-----EcCCCEEEEEEC
Confidence 45666788889999999999999998888899999842 1110 112211 123345779999
Q ss_pred ecCCCCCeEEEEEEeCCCCc-eeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCC-CceeEEeECC
Q psy14540 68 SVRVEDSGIYQCTATNRVGS-QTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDP-PLTISWLKNG 145 (291)
Q Consensus 68 ~~~~~d~G~y~C~~~~~~~~-~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p-~~~~~W~~~~ 145 (291)
+++.+|+|.|+|.+.+..+. ......+.|...+..| ... ..+....+.+|+.++|.|.+..+.| .+.+.|+++|
T Consensus 100 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p---~v~-~~~~~~~~~~g~~v~l~C~~~~~~p~~~~v~W~k~g 175 (237)
T 3sob_L 100 SLQPEDFATYYCQQSYTTPPTFGQGTKVEIKRTVAAP---SVF-IFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDN 175 (237)
T ss_dssp SCCGGGCEEEEEEECSSSSCEECCCEEEEEECCCBCC---EEE-EECCCHHHHHHTEEEEEEEEEEEBSSCCEEEEEETT
T ss_pred CCChhhCeEEEEeeccCCceEEcCcEEEEEecCCCCC---ceE-EeCCChhhccCCceEEEEEEcccCCCceEEEEEECC
Confidence 99999999999999865542 3344567776533222 111 1112223346888999999965466 6899999999
Q ss_pred EeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeC
Q psy14540 146 LPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNT 225 (291)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~ 225 (291)
..+.... +..........|.|.+ .+.|.|.....+|+|.|+|.|.|.
T Consensus 176 ~~~~~~~-------------~~~~~~~~~~~g~~~~--------------------~s~L~i~~~~~~d~g~Y~C~a~n~ 222 (237)
T 3sob_L 176 ALQSGNS-------------QESVTEQDSKDSTYSL--------------------SSTLTLSKADYEKHKVYACEVTHQ 222 (237)
T ss_dssp EECCSSE-------------EEEECCCCTTTCCEEE--------------------EEEEEEEHHHHTTCCEEEEEEECT
T ss_pred CCCCCce-------------eecccccccCCCcEEE--------------------EEEEEEcHHHccCCCcEEEEEeeC
Confidence 8875431 1222333445566655 346788888888999999999988
Q ss_pred CccCCce
Q psy14540 226 VASDNHS 232 (291)
Q Consensus 226 ~~~~~~~ 232 (291)
.......
T Consensus 223 ~~~~~~~ 229 (237)
T 3sob_L 223 GLSSPVT 229 (237)
T ss_dssp TCSSCEE
T ss_pred CCCCcee
Confidence 7544433
No 120
>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*
Probab=99.91 E-value=2.1e-22 Score=147.49 Aligned_cols=183 Identities=19% Similarity=0.272 Sum_probs=117.8
Q ss_pred cceeecceeeeecCCcEEEEEEecCCCCCeeEEEEC--CeecC-------------CCeeEeceEEeeccceEEEEEEee
Q psy14540 4 QLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLD--GYPLA-------------GDRFVMGQYMSLHGDVISHVNISS 68 (291)
Q Consensus 4 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~--~~~~~-------------~~~~~~~~~~~~~~~~~~~l~i~~ 68 (291)
.|.. |....+.+|++++|.|.+.+.+.+.+.|+++ +..+. ..++.. ......+.|.|.+
T Consensus 3 ~v~q-p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~g~~~~~~~~~~~~~~~~~~~r~~~-----~~~~~~~~L~I~~ 76 (210)
T 1lk3_L 3 VLTQ-PPALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSG-----SGSGTDFTLTIDP 76 (210)
T ss_dssp CEEC-CSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEE-----EEETTEEEEEESS
T ss_pred cEEC-CCcEEEcCCCCEEEEeeCCCccCCCEEEEEECCCCCeEEEEEccccccCCccccEEE-----EecCCEEEEEECC
Confidence 3455 8888999999999999999887788999984 22220 111111 1123446899999
Q ss_pred cCCCCCeEEEEEEeCCCCce-eeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCc-eeEEeECCE
Q psy14540 69 VRVEDSGIYQCTATNRVGSQ-THSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPL-TISWLKNGL 146 (291)
Q Consensus 69 ~~~~d~G~y~C~~~~~~~~~-~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~~~~ 146 (291)
++.+|+|.|+|.+.+..+.. .....|.|......| ......+. ..+.+|+.++|.|.+.+..|.+ .+.|+++|.
T Consensus 77 v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~P---~v~~~~~~-~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~ 152 (210)
T 1lk3_L 77 VEADDTAIYFCQQSWNGPLTFGAGTKLELKRADAAP---TVSIFPPS-TEQLATGGASVVCLMNNFYPRDISVKWKIDGT 152 (210)
T ss_dssp CCGGGCEEEEEEECSSSSCEECCCEEEEECCCCBCC---EEEEECCC-HHHHTTTEEEEEEEEEEEBSSCCEEEEEETTE
T ss_pred CCHHHCeEEEEEEEcCCCceeCCCEEEEEcCCCcCC---eEEEECCc-hhhccCCcEEEEEEEEeEeCCceEEEEEeCCc
Confidence 99999999999998766532 234466775533222 11111121 2234799999999995445654 899999999
Q ss_pred eccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCC
Q psy14540 147 PILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTV 226 (291)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~ 226 (291)
.+...... .........|.|.. .+.|.|..+..+|+|.|+|.|.|..
T Consensus 153 ~~~~~~~~-------------~~~~~~~~~~~~~~--------------------~s~L~i~~~~~~d~G~Y~C~a~n~~ 199 (210)
T 1lk3_L 153 ERRDGVLD-------------SVTDQDSKDSTYSM--------------------SSTLSLTKADYESHNLYTCEVVHKT 199 (210)
T ss_dssp ECCTTEEE-------------EECCCCTTTCCEEE--------------------EEEEEEEHHHHHTCCEEEEEEECTT
T ss_pred cCCCCceE-------------ccCCccCCCCCEEE--------------------EEEEEEChHHhccCCcEEEEEEecC
Confidence 87543111 01112223344432 2467788888888888888888876
Q ss_pred ccC
Q psy14540 227 ASD 229 (291)
Q Consensus 227 ~~~ 229 (291)
...
T Consensus 200 ~~~ 202 (210)
T 1lk3_L 200 SSS 202 (210)
T ss_dssp CSS
T ss_pred CCC
Confidence 443
No 121
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.91 E-value=3.5e-24 Score=168.91 Aligned_cols=189 Identities=19% Similarity=0.219 Sum_probs=137.2
Q ss_pred CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCe-EEEEE
Q psy14540 2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSG-IYQCT 80 (291)
Q Consensus 2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G-~y~C~ 80 (291)
+|.|...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+..... ........+|.|.+++..|+| .|+|.
T Consensus 158 ~P~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~i~W~~~~~~~~~~~~------~~~~~~~~~L~i~~v~~~D~G~~Y~C~ 231 (347)
T 2ifg_A 158 VPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVM------KSGGLPSLGLTLANVTSDLNRKNVTCW 231 (347)
T ss_dssp CCEEEEECCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEEC------CCCCSSEEEEEEESCCSTTTTCCEEEC
T ss_pred CCceeccCCceEEeCCCcEEEEEEEecCCCCEEEEEcCCceeecccc------cceecccceEEEeeCChHHCCCeEEEE
Confidence 78899899999999999999999999988999999998875441110 012233467999999999999 99999
Q ss_pred EeCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccC
Q psy14540 81 ATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSG 160 (291)
Q Consensus 81 ~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~ 160 (291)
+.+..|.....+.+.|..+|. . ......+|+.++|.|.+ .|.|.|.+.|+++|..+............
T Consensus 232 a~n~~g~~~~~~~l~V~~~P~------i-----~~~~~~~g~~v~l~C~~-~g~P~p~i~W~~~g~~l~~~~~~~~~~~~ 299 (347)
T 2ifg_A 232 AENDVGRAEVSVQVNVSFPAS------V-----QLHTAVEMHHWCIPFSV-DGQPAPSLRWLFNGSVLNETSFIFTEFLE 299 (347)
T ss_dssp CEETTEECCEEECCCCBEEEE------E-----EECCCEESSSEEEEEEE-EEESCCEEEEEETTEECCCCSSEEEEECC
T ss_pred EEcCCCCEEEEEEEEEcCCCe------e-----eeccCccCceEEEEEEe-eecCCCcEEEEeCCEECCCCcceeeEEEe
Confidence 998887777777776654331 0 11234578999999999 68899999999999988754432211100
Q ss_pred CceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecC
Q psy14540 161 EYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVP 240 (291)
Q Consensus 161 ~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~ 240 (291)
.+.+. .....+|.|.++..+|+|.|+|.|.|..|....++.|.|..+
T Consensus 300 -------------~~~~~--------------------~~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~ 346 (347)
T 2ifg_A 300 -------------PAANE--------------------TVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDN 346 (347)
T ss_dssp -------------CCTTC--------------------CCEEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEECSCCC
T ss_pred -------------ecCCC--------------------cccceEEEECCCCcccCceEEEEEecCCCceeeEEEEEecCC
Confidence 00000 011456777777888888888888888888888888887766
Q ss_pred C
Q psy14540 241 P 241 (291)
Q Consensus 241 p 241 (291)
|
T Consensus 347 P 347 (347)
T 2ifg_A 347 P 347 (347)
T ss_dssp C
T ss_pred C
Confidence 5
No 122
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}
Probab=99.91 E-value=2.9e-24 Score=161.75 Aligned_cols=142 Identities=16% Similarity=0.254 Sum_probs=98.2
Q ss_pred ceeecceeeeecCCcEEEEEEecC---CCCCeeEEEECCeecCCC-eeE------------------------eceEEee
Q psy14540 5 LIYKFIQQTLQPGPPVSLKCIATG---NPTPHISWKLDGYPLAGD-RFV------------------------MGQYMSL 56 (291)
Q Consensus 5 ~~~~~~~~~v~~g~~v~l~C~~~~---~~~~~v~W~~~~~~~~~~-~~~------------------------~~~~~~~ 56 (291)
+...+..+.+.+|++++|.|.+.+ .+.+.+.|++++...... .+. ...+...
T Consensus 5 v~~~~~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 84 (250)
T 2fbo_J 5 VRTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASV 84 (250)
T ss_dssp EECSCSEEEECTTSCEEECCEEEECSCCSCCEEEEEEEEETTEEEEEEEEEECCCBTTBCCCTTSEEEEECGGGTTTEEC
T ss_pred EEcCCCceEEecCCeEEEEEEeEcCCCCCceEEEEEeCCCCCccEEEEeeccccccccccccccccccccCCCcCceEEe
Confidence 344556788999999999999986 678889999987543100 000 0000000
Q ss_pred ccceEEEEEEeecCCCCCeEEEEEEeCCCCce-----eeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEee
Q psy14540 57 HGDVISHVNISSVRVEDSGIYQCTATNRVGSQ-----THSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVT 131 (291)
Q Consensus 57 ~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~-----~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~ 131 (291)
...+..+|.|.+++.+|+|.|+|.+.+..+.. ...+.|.|...+..+. .....+....+.+|+.+.|.|.+
T Consensus 85 ~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~---~~~~~~~~~~v~~g~~v~L~C~~- 160 (250)
T 2fbo_J 85 ANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNN---VHVSTAEVVQVDEGNDITMTCPC- 160 (250)
T ss_dssp SCTTSCCEEECSCCGGGCEEEEEEEECTTCCSGGGEEEEEEEEEETTTSCCSC---CEECCCSEEECCTTCCEEECCCE-
T ss_pred ccCCcceEEEeeCChhhCeEEEEEeccCccCCcccccceeEEEEEeccCCCCe---EEEecCceEEecCCCcEEEEEEe-
Confidence 01112469999999999999999999766542 4477788876543321 12234455777889999999999
Q ss_pred CCCCCceeEEeECCEeccC
Q psy14540 132 KGDPPLTISWLKNGLPILS 150 (291)
Q Consensus 132 ~~~p~~~~~W~~~~~~~~~ 150 (291)
.+.|.|.+.|++++..+..
T Consensus 161 ~g~p~p~v~W~k~~~~~~~ 179 (250)
T 2fbo_J 161 TDCANANVTWYTGPTFFEN 179 (250)
T ss_dssp ESCTTCEEEEEEEEECSSC
T ss_pred cCCCCCeeEEEeCCCcccc
Confidence 6878889999999987754
No 123
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Probab=99.90 E-value=2.3e-22 Score=148.61 Aligned_cols=193 Identities=13% Similarity=0.227 Sum_probs=122.5
Q ss_pred eeecceeeeecCCcEEEEEEecCCC-----CCeeEEEECCeecC---CCe---------eEeceEEee--ccceEEEEEE
Q psy14540 6 IYKFIQQTLQPGPPVSLKCIATGNP-----TPHISWKLDGYPLA---GDR---------FVMGQYMSL--HGDVISHVNI 66 (291)
Q Consensus 6 ~~~~~~~~v~~g~~v~l~C~~~~~~-----~~~v~W~~~~~~~~---~~~---------~~~~~~~~~--~~~~~~~l~i 66 (291)
...+....+.+|+++.|.|.+.+.| ...+.|++++..+. ... +........ ......+|.|
T Consensus 5 ~~p~~~v~~~~G~~v~L~C~~~~~p~~~~~~~~v~W~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I 84 (222)
T 3sbw_C 5 TVPKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQI 84 (222)
T ss_dssp BCSCSEEEEETTSCEEEEEECCCCSSCCTTTCEEEEEETTEEEEEEETTEECSSSSCGGGSSSEEECHHHHTTTEEEEEE
T ss_pred ecCCccEEEEcCCcEEEEeEecCCCCCCCccEEEEEEECCcEEEEEeCCccccccccccccCceEEccccccCCEEEEEE
Confidence 4455667899999999999987644 34799999764332 100 000000000 0223467999
Q ss_pred eecCCCCCeEEEEEEeCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeEC-C
Q psy14540 67 SSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKN-G 145 (291)
Q Consensus 67 ~~~~~~d~G~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~-~ 145 (291)
.+++.+|+|.|+|.+.+ .+.....+.|.|..++..+... ....+.+|+.+.|.|.+ .|.|.+.+.|+++ +
T Consensus 85 ~~v~~~D~G~Y~C~~~~-~~~~~~~~~l~V~~~~~~~~~~-------~~~~~~~g~~v~L~C~~-~g~P~p~i~W~~~~g 155 (222)
T 3sbw_C 85 TDVKLQDAGVYRCMISY-GGADYKRITVKVNAPYNKINQR-------ILVVDPVTSEHELTCQA-EGYPKAEVIWTSSDH 155 (222)
T ss_dssp SSCCGGGCEEEEEEEES-SSEEEEEEEEEEEBCCCCCEEE-------EEEEETTTTEEEEEEEE-EEBSCCEEEEEETTC
T ss_pred cCcccccCeEEEEEEEe-CCCceeEEEEEEECCCCCCCce-------eeeeecCCCcEEEEEEe-cCCCCCeEEEEECCC
Confidence 99999999999999998 5666777888888665332111 11256789999999999 5799999999998 5
Q ss_pred EeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeC
Q psy14540 146 LPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNT 225 (291)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~ 225 (291)
..+........ .....|.|.- .....+...|.|.|+|.|.|.
T Consensus 156 ~~~~~~~~~~~---------------~~~~~~~~~~-----------------------~~~l~v~~~d~g~Y~C~a~n~ 197 (222)
T 3sbw_C 156 QVLSGKTTTTN---------------SKREEKLFNV-----------------------TSTLRINTTTNEIFYCTFRRL 197 (222)
T ss_dssp CEECCEEEEEE---------------CC----CEEE-----------------------EEEEEEECCTTCEEEEEEEET
T ss_pred ceecCccceEE---------------EcCCCCCEEE-----------------------EEEEEEeccCCcEEEEEEEeC
Confidence 44432211100 1112222211 122234568899999999999
Q ss_pred CccCCceeEEEEecCCCCCC
Q psy14540 226 VASDNHSSNLRVNVPPHIGP 245 (291)
Q Consensus 226 ~~~~~~~~~l~v~~~p~~~~ 245 (291)
.+.......|.|..+|...+
T Consensus 198 ~g~~~~~~~l~v~~~p~~~~ 217 (222)
T 3sbw_C 198 DPEENHTAELVIPELPLAHP 217 (222)
T ss_dssp TTTEEEEEEEECCCC-----
T ss_pred ccceeeEEEEEecCCcccCC
Confidence 98888888888877665443
No 124
>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}
Probab=99.90 E-value=1.4e-23 Score=154.54 Aligned_cols=186 Identities=15% Similarity=0.216 Sum_probs=115.0
Q ss_pred eecceeeeecCCcEEEEEEecCCCCC---eeEEEECCeecCCCeeEe---------c-----eEE---eeccceEEEEEE
Q psy14540 7 YKFIQQTLQPGPPVSLKCIATGNPTP---HISWKLDGYPLAGDRFVM---------G-----QYM---SLHGDVISHVNI 66 (291)
Q Consensus 7 ~~~~~~~v~~g~~v~l~C~~~~~~~~---~v~W~~~~~~~~~~~~~~---------~-----~~~---~~~~~~~~~l~i 66 (291)
..|..+++.+|++++|.|.+.+.+.+ .|.|+|++..+....... . +.. .......++|.|
T Consensus 4 ~~p~~vtv~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I 83 (218)
T 4frw_A 4 ETSDVVTVVLGQDAKLPCFYRGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLL 83 (218)
T ss_dssp ECCSEEEEETTSCEEECCEECCCTTCEEEEEEEEEECSSSCEEEEEEEETTTEEEECGGGTTTEECCSSCCCTTBCCEEE
T ss_pred eCCCeEEEEcCCCEEEEEEEEcCCCCCccEEEEEECCCCCCceeEEEecCCCCeEeCccccceEEEecccccCCeEEEEE
Confidence 45677889999999999999886654 489999876543111100 0 000 000112356999
Q ss_pred eecCCCCCeEEEEEEeCCCCceee-eeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECC
Q psy14540 67 SSVRVEDSGIYQCTATNRVGSQTH-SADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNG 145 (291)
Q Consensus 67 ~~~~~~d~G~y~C~~~~~~~~~~~-~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~ 145 (291)
.+++.+|+|.|.|.+.+..+.... ...+.+...+.. .........+..|+.+.+.|.+ .+.|.+.+.|++++
T Consensus 84 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~c~~-~g~p~p~i~W~~~~ 156 (218)
T 4frw_A 84 RNAVQADEGEYECRVSTFPAGSFQARLRLRVLVPPLP------SLNPGPALEEGQGLTLAASCTA-EGSPAPSVTWDTEV 156 (218)
T ss_dssp SSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCCC------EEEECSCEETTCCSEEEEEEEE-EEBSCCEEEEEESS
T ss_pred eeccHHHCCceeEEEEeccCceeeeEEEEEEeeeccc------eeeeeeeeeeeeccccceeeec-cCCcCceEEEEECC
Confidence 999999999999998865544333 333344333211 1122334567789999999998 68899999999998
Q ss_pred EeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeC
Q psy14540 146 LPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNT 225 (291)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~ 225 (291)
..+.............. .+.|.|.++..+|+|.|+|.|.|.
T Consensus 157 ~~~~~~~~~~~~~~~~~---------------------------------------~s~L~i~~~~~~d~g~YtC~a~N~ 197 (218)
T 4frw_A 157 KGTTSSRSFKHSRSAAV---------------------------------------TSEFHLVPSRSMNGQPLTCVVSHP 197 (218)
T ss_dssp CCEEEEEEEECSSSEEE---------------------------------------EEEEEECCCGGGTTCEEEEEEECT
T ss_pred cccccCceEecCCcEEE---------------------------------------EEEEEEeeCCHHhCeEEEEEEEeC
Confidence 76643222111100000 235666666667777777777776
Q ss_pred CccCCceeEEEEe
Q psy14540 226 VASDNHSSNLRVN 238 (291)
Q Consensus 226 ~~~~~~~~~l~v~ 238 (291)
.+..+..+.+.|.
T Consensus 198 ~g~~~~~~t~~v~ 210 (218)
T 4frw_A 198 GLLQDQRITHILH 210 (218)
T ss_dssp TCSSCEEEEEECC
T ss_pred CCCeEEEEEEEEE
Confidence 6665555555443
No 125
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.90 E-value=2.7e-22 Score=143.81 Aligned_cols=110 Identities=18% Similarity=0.330 Sum_probs=81.2
Q ss_pred eeeecCCcEEEEEEecCCCCC--eeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCcee
Q psy14540 12 QTLQPGPPVSLKCIATGNPTP--HISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQT 89 (291)
Q Consensus 12 ~~v~~g~~v~l~C~~~~~~~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~ 89 (291)
..+.+|+.++|.|.+.+.+.+ .+.|++++..+...... .....|.|. +..|+|.|+|.+.+ ...
T Consensus 8 ~~v~~G~~v~l~C~~~~~~~p~~~~~W~k~~~~l~~~~~~---------~~~~~l~i~--~~~d~G~Y~C~~~n---~~~ 73 (184)
T 3b5h_A 8 TVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALP---------GQKTEFKVD--SDDQWGEYSCVFLP---EPM 73 (184)
T ss_dssp EEEEETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTCC---------CSEEEEEEC--GGGCCEEEEEEEES---TTS
T ss_pred EEEecCCCEEEEEECCCCCCCceEEEEEeCCEEeeccccc---------CCcEEEEEe--chhhCeEEEEEEEC---CcC
Confidence 457899999999999876655 89999999877633211 112345565 68899999999997 234
Q ss_pred eeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCC-CceeEEeE
Q psy14540 90 HSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDP-PLTISWLK 143 (291)
Q Consensus 90 ~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p-~~~~~W~~ 143 (291)
..+.|.|...|... ..+....+.+|+.+.|.|.+ .+.| .+.+.|++
T Consensus 74 ~~~~l~V~~~P~~~-------~~~~~~~~~~g~~~~l~C~~-~g~p~~~~i~W~~ 120 (184)
T 3b5h_A 74 GTANIQLHGPPRVK-------AVKSSEHINEGETAMLVCKS-ESVPPVTDWAWYK 120 (184)
T ss_dssp CEEEEEECCSCCCE-------ESCSEEEECTTSCEEEEEEC-CCSSCCCEEEEEE
T ss_pred cEEEEEEecCCcee-------ecCCCcEEcCCCcEEEEEEE-CCCCCCCeEEEEE
Confidence 56677787655221 22344578899999999999 6888 79999999
No 126
>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E
Probab=99.90 E-value=7.7e-23 Score=153.60 Aligned_cols=195 Identities=16% Similarity=0.232 Sum_probs=125.0
Q ss_pred CcceeecceeeeecCCcEEEEEEecCCCCCeeEEEE----------------CCeecCC----CeeEeceEEeeccceEE
Q psy14540 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKL----------------DGYPLAG----DRFVMGQYMSLHGDVIS 62 (291)
Q Consensus 3 p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~----------------~~~~~~~----~~~~~~~~~~~~~~~~~ 62 (291)
+.+...|..+.+.+|++++|.|.+.+.+.+.+.|+| ++..... .++... ......+
T Consensus 2 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~----~~~~~~~ 77 (246)
T 4dzb_B 2 AVVSQHPSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLIN----HASLTLS 77 (246)
T ss_dssp CCEEEECSEEEEETTSCEEEEEEESSSCCCSEEEEEECTTSCCEEEEEECTTSCCEECTTCCGGGEEEE----EEETTEE
T ss_pred CccEECCcEEEEeCCCcEEEEeEecCCCceEEEEEEECCCCCcEEEEEEccCCCceecCcccCCcEEEE----ecCCCEE
Confidence 456778888999999999999999988888999998 2221111 122211 1123457
Q ss_pred EEEEeecCCCCCeEEEEEEeCCCC----ceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCc-
Q psy14540 63 HVNISSVRVEDSGIYQCTATNRVG----SQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPL- 137 (291)
Q Consensus 63 ~l~i~~~~~~d~G~y~C~~~~~~~----~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~- 137 (291)
+|.|.+++.+|+|.|.|.+.+..+ .....+.|.|......+.........+....+.+|+.++|.|.+....|.+
T Consensus 78 ~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~i~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~ 157 (246)
T 4dzb_B 78 TLTVTSAHPEDSSFYICSARTSGDFGEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHV 157 (246)
T ss_dssp EEEECSCCGGGCEEEEEEECCSSGGGCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCE
T ss_pred EEEECCCCHHHCEEEEEEEecCCCCcceEEcCCEEEEEecCCCcccCCceEeecCCchhccCCCcEEEEEEEccCcCCce
Confidence 899999999999999999986432 233455677765211111111222233334466799999999985434433
Q ss_pred eeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCC-Ce
Q psy14540 138 TISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGH-SG 216 (291)
Q Consensus 138 ~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~-~g 216 (291)
.+.|+++|..+....... ...+.....++.|.|.. .+.|.|.....+| +|
T Consensus 158 ~v~W~k~g~~l~~~~~~~---------~~~~~~~~~~~~g~~~~--------------------~s~l~i~~~~~~d~~g 208 (246)
T 4dzb_B 158 ELSWWVNGKEVHSGVCTD---------PQPLKEQPALNDSRYAL--------------------SSRLRVSATFWQNPRN 208 (246)
T ss_dssp EEEEEETTEEECTTEEEC---------SSCEESSTTSTTCCEEE--------------------EEEEEEEHHHHTCTTC
T ss_pred EEEEEECCEECCCCcccc---------cccccccccCCCCCEEE--------------------EEEEEECHHHhccCCC
Confidence 899999998886432110 00111222334566655 2457788887777 99
Q ss_pred eEEEEeeeCCccCC
Q psy14540 217 NYTCVASNTVASDN 230 (291)
Q Consensus 217 ~y~C~~~~~~~~~~ 230 (291)
.|+|.|.|......
T Consensus 209 ~YtC~v~~~~~~~~ 222 (246)
T 4dzb_B 209 HFRCQVQFYGLSEN 222 (246)
T ss_dssp EEEEEEEECCBCTT
T ss_pred eEEEEEEecCCCCc
Confidence 99999999875444
No 127
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*
Probab=99.90 E-value=1.6e-23 Score=159.33 Aligned_cols=225 Identities=16% Similarity=0.224 Sum_probs=124.7
Q ss_pred CCcceeecceeeeecCCcEEEEEEec---CCCCCeeEEEECCeecCCCeeEe--------------ceEEe--eccceEE
Q psy14540 2 HPQLIYKFIQQTLQPGPPVSLKCIAT---GNPTPHISWKLDGYPLAGDRFVM--------------GQYMS--LHGDVIS 62 (291)
Q Consensus 2 ~p~~~~~~~~~~v~~g~~v~l~C~~~---~~~~~~v~W~~~~~~~~~~~~~~--------------~~~~~--~~~~~~~ 62 (291)
.|.+...+....+.+|++++|.|.+. +.+.+.+.|++++.......... .+... .......
T Consensus 5 ~~~v~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 84 (268)
T 3mj6_A 5 LPGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDG 84 (268)
T ss_dssp -------CCEEEEETTCCEEECCBCCCSSCCCEEEEEEEEESSSTTCCEEEEEEETTEEEECGGGTTTEEECSCTTTTBC
T ss_pred ccccccCCCceEEecCCcEEEEEEeecCCCCceEEEEEEEeCCCCCceEEEEEEcCCCcccCccccCceEEeecCCCCEE
Confidence 35677888889999999999999987 56677899999654332111100 00000 0111226
Q ss_pred EEEEeecCCCCCeEEEEEEeCCCCce--eeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEee--CCCCCce
Q psy14540 63 HVNISSVRVEDSGIYQCTATNRVGSQ--THSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVT--KGDPPLT 138 (291)
Q Consensus 63 ~l~i~~~~~~d~G~y~C~~~~~~~~~--~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~--~~~p~~~ 138 (291)
+|.|.+++.+|+|.|+|.+.+..+.. ...+.|.|. +. .+....+.+|+.++|.|.+. .+.|.+.
T Consensus 85 ~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~--~~----------~p~~~~v~~G~~v~L~C~~~~~~~~p~~~ 152 (268)
T 3mj6_A 85 SLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVL--PE----------EPRDLRVRVGDTTQMRCSIQSTEEKRVTK 152 (268)
T ss_dssp CEEECSCCGGGCEEEEEEEEETTCCCEEEEEEEEEEE--CC----------CCSEEEEETTCCEEECCBCEESSSSCCCE
T ss_pred EEEECCCCHhHCEEEEEEEEecCCcceEEEEEEEEEe--cc----------CCCccccccCCcEEEEEEecCCCCCCccc
Confidence 69999999999999999998765443 344455554 21 22346788999999999983 5778899
Q ss_pred eEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEE--EeccceEEEEeeeecCCCe
Q psy14540 139 ISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLR--VNEYTSSLSIATLSTGHSG 216 (291)
Q Consensus 139 ~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~--~~~~~~~l~i~~~~~~~~g 216 (291)
+.|++++........ .+....-. .. .|. ...+.......+. .......|.|.++..+|+|
T Consensus 153 v~W~~~~~~~~~~~~-----------~~~~~~~~--~~-~~~----~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G 214 (268)
T 3mj6_A 153 VNWMFSSGSHTEEET-----------VLSYDSNM--RS-GKF----QSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQG 214 (268)
T ss_dssp EEEEEECTTCSSCEE-----------EEEEETTS--SS-CEE----ECSSTTTTTEEECSCGGGTBCCEEECSCCGGGCE
T ss_pred eEEEecCCCCCccee-----------EEEecCCC--Cc-ccc----ccccccccceEeeccCCCCeEEEEECcCChhhCe
Confidence 999995332211110 01110000 00 000 0000000011110 1123568999999999999
Q ss_pred eEEEEeeeCCccCCceeEEEEe-cCCCCCCCCccc-ccCCce
Q psy14540 217 NYTCVASNTVASDNHSSNLRVN-VPPHIGPFTFGE-LMEGVR 256 (291)
Q Consensus 217 ~y~C~~~~~~~~~~~~~~l~v~-~~p~~~~~~~~~-~~~g~~ 256 (291)
.|+|.|.|..+.....+.|.|. .+|.+...+... +.+|+.
T Consensus 215 ~Y~C~a~n~~g~~~~~~~l~V~~~~p~~~~~p~~~~~~~~q~ 256 (268)
T 3mj6_A 215 IYTCSIYVGKLESRKTIVLHVVQDEFQRTISPTPPTDKGQQG 256 (268)
T ss_dssp EEEEEEEETTEEEEEEEEEEEECC------------------
T ss_pred EEEEEEEcCCceEEEEEEEEEEcCCCeeeeCCCCCCCCccee
Confidence 9999999988888888888884 455555544433 444443
No 128
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.90 E-value=2.8e-23 Score=163.05 Aligned_cols=194 Identities=25% Similarity=0.390 Sum_probs=134.6
Q ss_pred eeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCceee
Q psy14540 11 QQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQTH 90 (291)
Q Consensus 11 ~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~ 90 (291)
...+.+|+.+.|.|.+.+.|.+.+.|++++..+....... . ........+|.|.+++..|+|.|+|.+.+..+....
T Consensus 132 ~~~v~~g~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~-~--~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~ 208 (334)
T 1ry7_B 132 LLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIG-G--IKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQ 208 (334)
T ss_dssp EEEEETTCCEEEECCCCCSSCCEEECCBTTBCCCTTSSTT-C--CCCCTTTTEEEECSCCGGGCCCEEEEEEETTEEEEE
T ss_pred eEEecCCCcEEEEEEccCCCCCeEEEEECCEECccccccc-c--eecccceEEEEECCCCcccCEEEEEEEEeCCCCEEE
Confidence 4578899999999999988889999999998776321100 0 001122346999999999999999999998888888
Q ss_pred eeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeE----CCEeccCCCceEEeccCCceEEE
Q psy14540 91 SADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLK----NGLPILSDAEITIRSSGEYTSSL 166 (291)
Q Consensus 91 ~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~----~~~~~~~~~~~~~~~~~~~~~~l 166 (291)
.+.|.|...+..+ .......+....+.+|+.+.|.|.+ .+.|.+.+.|++ +|..+...........
T Consensus 209 ~~~l~V~~~~~~~--p~~~~~~~~~~~~~~G~~v~l~C~~-~g~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~------- 278 (334)
T 1ry7_B 209 TYTLDVLERSPHR--PILQAGLPANQTAVLGSDVEFHCKV-YSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVL------- 278 (334)
T ss_dssp EEEEEEECCCCSS--CBCCTTCSCCEEEESSCCEEECCCC-BCSSCEEEEEEECCCGGGCSBCTTSSBCCCCC-------
T ss_pred EEEEEEecCCCCC--CceEecCCCceEEeCCCCEEEEEEE-ecCCCCeEEEEECCcCCCccccCCCCeeEEEe-------
Confidence 8888888654221 1111123355678899999999999 689999999999 6665543322110000
Q ss_pred EEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCC
Q psy14540 167 SIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPP 241 (291)
Q Consensus 167 ~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p 241 (291)
.+.|. .. .......|.|.++..+|+|.|+|.|.|..|....++.|.|...|
T Consensus 279 -------~~~~~-----------~~------~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~ 329 (334)
T 1ry7_B 279 -------KTAGA-----------NT------TDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVVLPAE 329 (334)
T ss_dssp -------CCSSC-----------SC------SCTTCCCEEECSCCTTSCSEEEEEEEESSCCEEEEEEEEEECSC
T ss_pred -------ecCcc-----------cc------ccccccEEEEccCCHHHCEEEEEEEeCCCCeEEEEEEEEEEECC
Confidence 00000 00 00112468888888888899999999988888888888887654
No 129
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}
Probab=99.90 E-value=1.6e-22 Score=157.22 Aligned_cols=183 Identities=14% Similarity=0.149 Sum_probs=116.0
Q ss_pred CCcceeecc-eeeeecCCcEEEEEEec-CCCCCeeEEEECCeecCC-CeeEeceEEeeccceEEEEEEeecCCCCCeEEE
Q psy14540 2 HPQLIYKFI-QQTLQPGPPVSLKCIAT-GNPTPHISWKLDGYPLAG-DRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQ 78 (291)
Q Consensus 2 ~p~~~~~~~-~~~v~~g~~v~l~C~~~-~~~~~~v~W~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~ 78 (291)
+|.+...+. ...+.+|+.+.|.|.+. +.|.+.+.|++++..+.. .++... .......++|.|.+++.+|+|.|+
T Consensus 106 ~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~i~~~~~~~~~---~~~~~~~~~L~i~~~~~~d~G~Y~ 182 (312)
T 2y23_A 106 FPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMH---IDRNTGIIEMFMEKLQDEDEGTYT 182 (312)
T ss_dssp SCBCCEEEEEEEEECSSSCEEEEEEESCCCSSCEEEEEETTEEECSSSSCEEE---EETTTTEEEEEESCCCGGGCEEEE
T ss_pred CCccccccCCceEEeeCCCEEEEEEEEeCCCCCEEEEEECCEECeeCCcEEEE---EccCCCEEEEEEccCCcccCEeEE
Confidence 566655554 78899999999999999 788999999999998873 332221 122244577999999999999999
Q ss_pred EEEeCCCCceeeeeeEEEEcCCCC-----------C---cccceeccCCcceeecCCCceEEEEEeeCCCCCc-eeEEeE
Q psy14540 79 CTATNRVGSQTHSADMRVYDAPGQ-----------P---QDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPL-TISWLK 143 (291)
Q Consensus 79 C~~~~~~~~~~~~~~l~v~~~~~~-----------~---~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~ 143 (291)
|.+.+... .....+.+...... + ....... .+....+.+|+.+.|.|.+ .+.|.+ .+.|++
T Consensus 183 C~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~v~~G~~~~l~C~~-~~~p~~~~v~W~~ 258 (312)
T 2y23_A 183 FQLQDGKA--TNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFV-EYLSWEVTGECNVLLKCKV-ANIKKETHIVWYK 258 (312)
T ss_dssp EEEESSSC--EEEEEEEECTHHHHHHHHHHHHHHHHHHHHHSSEEE-EEEEEEEETTTEEEEEEEE-ESCCSSCEEEEEE
T ss_pred EEEEeCCc--eEEEEEEEcchhhhhhcccccccccchhhccCCcee-ecceEEEeCCCEEEEEEEE-cCCCCCCEEEEee
Confidence 99975333 33333333110000 0 0000000 1112578899999999999 577777 999999
Q ss_pred CCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCce
Q psy14540 144 NGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSS 194 (291)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~ 194 (291)
++..+....+.... .+...|.|.++..+|.|.|+|.|.|..|.....+
T Consensus 259 ~g~~~~~~~~~~~~---~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~~ 306 (312)
T 2y23_A 259 DEREISVDEKHDFK---DGICTLLITEFSKKDAGIYEVILKDDRGKDKSRL 306 (312)
T ss_dssp TTEEEEEECCC-------CEEEEEECSCSGGGCEEEEEEEESTTCCEEEEE
T ss_pred CCEECCCCCcEEEE---CCEEEEEECcCCHHHCEEEEEEEEcCCCceeeee
Confidence 99988654443322 1234566666666666666665555555444433
No 130
>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R
Probab=99.90 E-value=5.2e-23 Score=160.06 Aligned_cols=186 Identities=18% Similarity=0.251 Sum_probs=128.0
Q ss_pred CCcceeecceeeeecCCcEEEEEEec-CCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEE
Q psy14540 2 HPQLIYKFIQQTLQPGPPVSLKCIAT-GNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCT 80 (291)
Q Consensus 2 ~p~~~~~~~~~~v~~g~~v~l~C~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~ 80 (291)
+|.+...+....+..|+.+.+.|.+. +.|.+.+.|++++..+......... ........+.|.|.+....|.|.|+|.
T Consensus 117 ~P~~~~~~~~~~~~~~~~~~~~C~~~~~~P~~~i~W~~~~~~~~~~~~~~~~-~~~~~~~~s~l~i~~~~~~d~g~Y~C~ 195 (313)
T 4fqp_A 117 KPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGF-LSGTVTVTSLWILVPSSQVDGKNVTCK 195 (313)
T ss_dssp CCEEEEEECCBCCCSSCEEEEEEEEEEEBSCCEEEEEETTCCEEEEEEEECS-STTCEEEEEEEEECCCGGGTTCEEEEE
T ss_pred CCcceecccceEeecCceEEEEEEccCccCCcEEEeecCCccccccceeeee-cccccccceeeeecccccccCeeEEEE
Confidence 46666666667788899999999876 4788999999998766522111100 000011235688999999999999999
Q ss_pred EeCCCCceeee--eeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCc-eeEEeECCEeccCCCceEEe
Q psy14540 81 ATNRVGSQTHS--ADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPL-TISWLKNGLPILSDAEITIR 157 (291)
Q Consensus 81 ~~~~~~~~~~~--~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~~~~~~~~~~~~~~~ 157 (291)
+.+..+..... +.|.|..+| ...........+.+|+.++|.|.+ .|.|.| .+.|++++..+......
T Consensus 196 a~n~~~~~~~~~~~~l~V~~~P------~v~~~~~~~~~~~~g~~v~l~C~~-~g~P~p~~v~W~~~~~~l~~~~~~--- 265 (313)
T 4fqp_A 196 VEHESFEKPQLLTVNLTVYYPP------EVSISGYDNNWYLGQNEATLTCDA-RSNPEPTGYNWSTTMGPLPPFAVA--- 265 (313)
T ss_dssp EECTTSSSCEEEEEECCBCEEE------EEEEECCCSCEETTCCCEEEEEEE-EEESCCCEEEEEETTBSCCTTEEE---
T ss_pred EEccCcCccceeeeecccccCC------ccccccccceeecCCCeEEEEEEe-cCCCCCcEEEEEECCEECCCceEE---
Confidence 99876654433 344443322 111223334556788999999999 688888 69999999877432100
Q ss_pred ccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEE
Q psy14540 158 SSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRV 237 (291)
Q Consensus 158 ~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v 237 (291)
...+|.|.++..+|+|.|+|.|.|..|..+.++.|.|
T Consensus 266 -------------------------------------------~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V 302 (313)
T 4fqp_A 266 -------------------------------------------QGAQLLIRPVDKPINTTLICNVTNALGARQAELTVQV 302 (313)
T ss_dssp -------------------------------------------ETTEEEECCCSSCCEEEEEEEEECSSCEEEEEEEEEE
T ss_pred -------------------------------------------eCCEEEECcCChhhCEEEEEEEEeCCCcEEEEEEEEE
Confidence 0235777888888888888888888888888888888
Q ss_pred ecCC
Q psy14540 238 NVPP 241 (291)
Q Consensus 238 ~~~p 241 (291)
.++|
T Consensus 303 ~~~P 306 (313)
T 4fqp_A 303 KEGP 306 (313)
T ss_dssp ECCC
T ss_pred EeCC
Confidence 7654
No 131
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3
Probab=99.90 E-value=3.2e-23 Score=147.25 Aligned_cols=154 Identities=16% Similarity=0.264 Sum_probs=101.6
Q ss_pred eeeeecCCcEEEEEEecC--CCCCeeEEEECCeecC---C--CeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeC
Q psy14540 11 QQTLQPGPPVSLKCIATG--NPTPHISWKLDGYPLA---G--DRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATN 83 (291)
Q Consensus 11 ~~~v~~g~~v~l~C~~~~--~~~~~v~W~~~~~~~~---~--~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~ 83 (291)
.+.+.+|++++|.|.... .+.+.|.|+|++..+. . .......+.....+ .+|.|.+++.+|+|.|+|.+.+
T Consensus 5 ~v~~~~G~~v~L~c~~~~~~~~~~~i~W~k~~~~i~~~~~~~~~~~~~~r~~~~~~--gsL~I~~v~~~D~G~Y~C~~~n 82 (176)
T 1hng_A 5 TVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILAN--GDLKIKNLTRDDSGTYNVTVYS 82 (176)
T ss_dssp EEEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTT--SCEEESSCCGGGCEEEEEEEEE
T ss_pred EEEEEcCCcEEEcCCCCCcccccccEEEEeCCceeEEEcCCCeecCCCCeEEECCC--CcEEEcccccccCEEEEEEEEe
Confidence 456889999999995433 4567899999986542 0 00000000111112 2399999999999999999998
Q ss_pred CCCce--eeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCC
Q psy14540 84 RVGSQ--THSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGE 161 (291)
Q Consensus 84 ~~~~~--~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~ 161 (291)
..+.. ...+.|.|...+..| .....+..+.|.|.+ .+.|.+.+.|+++|..+....+
T Consensus 83 ~~g~~~~~~~~~l~V~~~~~~p------------~i~~~~~~v~L~C~~-~g~p~p~i~W~~~g~~l~~~~~-------- 141 (176)
T 1hng_A 83 TNGTRILNKALDLRILEMVSKP------------MIYWECSNATLTCEV-LEGTDVELKLYQGKEHLRSLRQ-------- 141 (176)
T ss_dssp TTCCEEEEEEEEEEEECCCCCC------------EEEEETTTTEEEEEC-SSCSSCEEEEEETTEEEEEESS--------
T ss_pred CCCCEEEEEEEEEEEeCCCCCC------------EEEecCCcEEEEEEe-cCCCCcEEEEEECCEECCCCCc--------
Confidence 88875 666778887654322 111234569999998 6888899999999988754322
Q ss_pred ceEEEEEeeCCCCCceeEEEEEEecCCCCC
Q psy14540 162 YTSSLSIATLSTGHSGNYTCVASNTVASDN 191 (291)
Q Consensus 162 ~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~ 191 (291)
+.+..+..+|.|.|+|.|.|..|...
T Consensus 142 ----~~i~~~~~~d~G~Y~C~a~N~~g~~~ 167 (176)
T 1hng_A 142 ----KTMSYQWTNLRAPFKCKAVNRVSQES 167 (176)
T ss_dssp ----SEEEEECSCCSSCEEEEEEETTEEEE
T ss_pred ----EEEEEEEccCCeEEEEEEEecCCCce
Confidence 23334556666666666666665443
No 132
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R
Probab=99.90 E-value=1.1e-22 Score=158.44 Aligned_cols=190 Identities=21% Similarity=0.312 Sum_probs=122.8
Q ss_pred eeeecCCcEEEEEEe------cCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEe-CC
Q psy14540 12 QTLQPGPPVSLKCIA------TGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTAT-NR 84 (291)
Q Consensus 12 ~~v~~g~~v~l~C~~------~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~-~~ 84 (291)
..+.+|+++.|.|.+ .+.|.+.+.|++++..+....... .... ..|.|.+++.+|+|.|+|.+. +.
T Consensus 113 ~~~~~g~~v~l~C~~~~~~~~~g~p~~~i~W~k~~~~l~~~~~~~---~~~~----~~L~i~~v~~~d~G~Y~C~a~~n~ 185 (315)
T 1itb_B 113 QKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHF---SGVK----DRLIVMNVAEKHRGNYTCHASYTY 185 (315)
T ss_dssp EEEETTSCEEEECSSCTTTCTTTTCCCCCEEEETTEECCCCSSSE---EEET----TEEEESSCCGGGCEEEEEEEEEEE
T ss_pred eEEecCCCeEEEEecccccccCCCCCCEEEEEECCEECCCccceE---eecC----ceEEEEeceehhCcEEEEEEEcCC
Confidence 568899999999998 678889999999999886322111 1111 258999999999999999999 66
Q ss_pred CCce---eeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCC
Q psy14540 85 VGSQ---THSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGE 161 (291)
Q Consensus 85 ~~~~---~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~ 161 (291)
.|.. ...+.+.+....... .+...........+.+|+.+.|.|.+ .+.|.+.+.|+++|..+..........
T Consensus 186 ~g~~~~~~~~~~~~~~~~~~~~-~P~~~~~~~~~~~~~~g~~v~l~C~~-~g~P~p~i~W~~~g~~i~~~~~~~~~~--- 260 (315)
T 1itb_B 186 LGKQYPITRVIEFITLEENKPT-RPVIVSPANETMEVDLGSQIQLICNV-TGQLSDIAYWKWNGSVIDEDDPVLGED--- 260 (315)
T ss_dssp TTEEEEEEEEEEEEEECCCCCC-CCEECSCCSEEEECCSSSCEEEEEEE-EECTTSEEEEEETTEECCTTCSSEEEE---
T ss_pred CCcEEEEEEEEEEEEecCCCCC-CCEEecCCCCcEEEeCCCcEEEEEEE-ecCCCCeeEEEECCEECCccccccccc---
Confidence 6654 334444444322111 11111122223578899999999999 689999999999999887654322110
Q ss_pred ceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCC-CeeEEEEeeeCCccCCceeEEEEe
Q psy14540 162 YTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGH-SGNYTCVASNTVASDNHSSNLRVN 238 (291)
Q Consensus 162 ~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~-~g~y~C~~~~~~~~~~~~~~l~v~ 238 (291)
...+.. ..+.... .....|.|.++..+| +|.|+|.|.|..|.....+.|.|.
T Consensus 261 ---~~~~~~--~~~~~~~--------------------~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~~~l~v~ 313 (315)
T 1itb_B 261 ---YYSVEN--PANKRRS--------------------TLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIYP 313 (315)
T ss_dssp ---EEEECC--SSCGGGE--------------------EEEEEEEESSCCGGGGTSCEEEEEECTTCCEEEEEEEECC
T ss_pred ---ceeeec--cCCCcee--------------------EEEEEEEEeecCHHHcCCceEEEEecCCCceeEEEEEEec
Confidence 000000 0000000 013457777777777 777777777777777777777664
No 133
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*
Probab=99.90 E-value=1.7e-22 Score=148.32 Aligned_cols=192 Identities=17% Similarity=0.192 Sum_probs=119.5
Q ss_pred ecceeeeecC--CcEEEEEEecCCCCCeeEEEEC---CeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEe
Q psy14540 8 KFIQQTLQPG--PPVSLKCIATGNPTPHISWKLD---GYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTAT 82 (291)
Q Consensus 8 ~~~~~~v~~g--~~v~l~C~~~~~~~~~v~W~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~ 82 (291)
.|..+.+.+| ++++|.|.+.+ |.+.+.|++. +..+...... ..... ..|.|.+++.+|+|.|+|.+.
T Consensus 13 ~p~~v~v~eG~~~~v~L~C~~~~-p~~~v~w~~~~~~g~~~~~~~~~----~~~~~---~~l~I~~v~~~D~G~Y~C~a~ 84 (213)
T 2x1w_L 13 QHGVVYITENKNKTVVIPCLGSI-SNLNVSLCARYPEKRFVPDGNRI----SWDSK---KGFTIPSYMISYAGMVFCEAK 84 (213)
T ss_dssp -CEEEEECCSTTCEEEECCCBSS-TTCCEEEEEETTTEEECCCSSSC----EEETT---TEEEEEGGGTTTCSEEEEEEC
T ss_pred CceEEEEecCCCccEEEeeccCC-CCcEEEEEhhcCCCccccCCCcc----cccCC---ccEEEccCChhcCceEEEEEE
Confidence 3467889999 99999999976 6689999884 6555532110 00111 238899999999999999998
Q ss_pred CCCCce-eeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCC--CceeEEeECCEeccCCCceEEecc
Q psy14540 83 NRVGSQ-THSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDP--PLTISWLKNGLPILSDAEITIRSS 159 (291)
Q Consensus 83 ~~~~~~-~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p--~~~~~W~~~~~~~~~~~~~~~~~~ 159 (291)
+..+.. +..+.+.|.... . ............+.+|+.++|.|.+. +.| .+.+.|++++..+..... .
T Consensus 85 n~~~~~~s~~~~l~v~~~~-~---p~~~~~~~~~~~v~~G~~v~L~C~~~-g~p~~~~~i~W~~~g~~~~~~~~-~---- 154 (213)
T 2x1w_L 85 INDESYQSIMYIVVVVGYR-I---YDVVLSPSHGIELSVGEKLVLNCTAR-TELNVGIDFNWEYPSSKHQHKKL-V---- 154 (213)
T ss_dssp ----CEECCCEEEEECBCC-E---EEEEEESCSCEEEETTCCEEEEEEEE-ECTTBCCEEEEECSCSSCCSEEE-E----
T ss_pred ECCeeEEEEEEEEEEeCCc-c---cceEEcCCCCeEEcCCCCEEEEEEEE-CCCCCceEEEEEecCCccceEEE-e----
Confidence 743332 222555554311 1 11222333445788999999999994 533 457999998876432100 0
Q ss_pred CCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEec
Q psy14540 160 GEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNV 239 (291)
Q Consensus 160 ~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~ 239 (291)
......... ...+ .....|.|.++..+|+|.|+|.|.|..|..+..+.|.|..
T Consensus 155 ------~~~~~~~~~-~~~~--------------------~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~ 207 (213)
T 2x1w_L 155 ------NRDLKTQSG-SEMK--------------------KFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHE 207 (213)
T ss_dssp ------EEEECCCSS-CSCE--------------------EEEEEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEC
T ss_pred ------ccccccccC-ccce--------------------eeeEEEEECCCCcccCEEEEEEEecCCCcEEEEEEEEEec
Confidence 000000000 0000 0134789999999999999999999998888999999988
Q ss_pred CCCCC
Q psy14540 240 PPHIG 244 (291)
Q Consensus 240 ~p~~~ 244 (291)
+|.|.
T Consensus 208 ~p~i~ 212 (213)
T 2x1w_L 208 DPIEG 212 (213)
T ss_dssp -----
T ss_pred ccccC
Confidence 87653
No 134
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}
Probab=99.90 E-value=1.7e-22 Score=158.23 Aligned_cols=135 Identities=18% Similarity=0.163 Sum_probs=97.1
Q ss_pred CCcceeecceeeeecCCcEEEEEEecCCC-CCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEE
Q psy14540 2 HPQLIYKFIQQTLQPGPPVSLKCIATGNP-TPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCT 80 (291)
Q Consensus 2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~ 80 (291)
||.+...+....+.+|+.+.|.|.+.+.| .+.+.|++++..+....... ... ...|.|.+++.+|+|.|+|.
T Consensus 128 ~p~~~~~~~~~~~~~G~~v~L~C~~~g~p~~~~i~W~k~~~~l~~~~~~~---~~~----~~~L~I~~v~~~D~G~Y~C~ 200 (329)
T 3oq3_B 128 PPSCIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKY---SQS----GQNLIIHNPELEDSGRYDCY 200 (329)
T ss_dssp CCSCEEEEEETTSSTTTCEEEECCCCSCCCCCEEEEEETTEECCCSSSSE---EEE----TTEEEECSCCGGGCEEEEEE
T ss_pred CCcEeccccceEEeCCCcEEEEeccCCCCCCceEEEEECCccCCCCCceE---ecC----CCEEEEeecChhhCEEEEEE
Confidence 45555555555678899999999999988 89999999999885221111 111 14589999999999999999
Q ss_pred EeCC--CCceee----eeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCC---Cc-eeEEeECCEec
Q psy14540 81 ATNR--VGSQTH----SADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDP---PL-TISWLKNGLPI 148 (291)
Q Consensus 81 ~~~~--~~~~~~----~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p---~~-~~~W~~~~~~~ 148 (291)
+.+. .+.... .+.|.|...+.... ... .+....+.+|+.+.|.|.+ .+.| .+ .+.|++++..+
T Consensus 201 a~n~~~~g~~~~~~s~~~~l~V~~~~~~~~---~~~-~~~~~~v~~G~~~~l~C~~-~g~p~~~~~i~v~W~~~g~~i 273 (329)
T 3oq3_B 201 VHYDDVRIKNDIVVSRCKILTVIPSQDHRF---KLI-LDPKINVTIGEPANITCTA-VSTSLLVDDVLIDWENPSGWI 273 (329)
T ss_dssp EEECCTTSSSCEEEEEEEEEEEECCCCCCE---EEE-CCSEEEECTTSCEEEEEEE-EETTCCTTCCEEEEECTTSCB
T ss_pred EEecccCCCceeEEEeeEEEEEECCCCCCC---cee-cCCeeEEecCCCEEEEEEE-EECCCCCCCcEEEEEECCeee
Confidence 9976 444332 36677776553221 111 3455788899999999999 4665 66 88999998874
No 135
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Probab=99.90 E-value=1.2e-23 Score=150.80 Aligned_cols=166 Identities=16% Similarity=0.211 Sum_probs=114.5
Q ss_pred eeeeecCCcEEEEEEecCCCCCeeEEEECCee--cC--CCeeE------eceEEeec---cceEEEEEEeecCCCCCeEE
Q psy14540 11 QQTLQPGPPVSLKCIATGNPTPHISWKLDGYP--LA--GDRFV------MGQYMSLH---GDVISHVNISSVRVEDSGIY 77 (291)
Q Consensus 11 ~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~--~~--~~~~~------~~~~~~~~---~~~~~~l~i~~~~~~d~G~y 77 (291)
.+.+.+|++++|.|.+.+.+.+.+.|++++.. +. ..... ..+..... ..+.++|.|.+++.+|+|.|
T Consensus 4 ~v~~~~G~~v~L~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~i~~v~~~D~G~Y 83 (184)
T 2ny1_B 4 VVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTY 83 (184)
T ss_dssp EEEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSCTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEE
T ss_pred cEEEeCCCCEEEEEEEcCCCceEEEEEeCCccceEEecCceEecCChhhCCccccccccccCCeEEEEEecCCHHHCEEE
Confidence 45789999999999998888889999998752 21 00000 00000010 22346699999999999999
Q ss_pred EEEEeCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEe
Q psy14540 78 QCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIR 157 (291)
Q Consensus 78 ~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~ 157 (291)
+|.+.+.. ..+.+.|.... . +....+.+|+.++|.|.+ .+.|.+.+.|++++..+..
T Consensus 84 ~C~~~~~~----~~~~l~V~~~~----------~-~~~~~v~~g~~~~l~C~~-~~~p~~~v~W~~~~~~~~~------- 140 (184)
T 2ny1_B 84 ICEVEDQK----EEVQLLVFGLT----------A-NSDTHLLQGQSLTLTLES-PPGSSPSVQCRSPRGKNIQ------- 140 (184)
T ss_dssp EEEETTEE----EEEEEEEEEEE----------E-SSCSEEETTCCEEEEEEC-CTTCCCEEEEECTTSCEEE-------
T ss_pred EEEEEcCC----CcEEEEEEEec----------C-CCCceeecCCCEEEEEEc-CCCCCCEEEEEeCCCcccc-------
Confidence 99998653 34556665321 1 223467899999999999 5779999999998754310
Q ss_pred ccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEE
Q psy14540 158 SSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRV 237 (291)
Q Consensus 158 ~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v 237 (291)
....|.|.++..+|+|.|+|.|.|..+..+..+.|.|
T Consensus 141 -------------------------------------------~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~~~~l~V 177 (184)
T 2ny1_B 141 -------------------------------------------GGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVV 177 (184)
T ss_dssp -------------------------------------------ESSEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred -------------------------------------------CceEEEEecCCcCCCeEEEEEEEECCceEEEEEEEEE
Confidence 1345777777777778888888777777777777777
Q ss_pred ecCCC
Q psy14540 238 NVPPH 242 (291)
Q Consensus 238 ~~~p~ 242 (291)
...|.
T Consensus 178 ~~~p~ 182 (184)
T 2ny1_B 178 LAFQK 182 (184)
T ss_dssp ECCCC
T ss_pred EecCC
Confidence 66553
No 136
>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A
Probab=99.90 E-value=2.9e-23 Score=153.02 Aligned_cols=144 Identities=20% Similarity=0.321 Sum_probs=94.4
Q ss_pred CcceeecceeeeecCCcEEEEEEecCC-CCCeeEEEECC--eecC-----CC----eeE---eceEEeeccceEEEEEEe
Q psy14540 3 PQLIYKFIQQTLQPGPPVSLKCIATGN-PTPHISWKLDG--YPLA-----GD----RFV---MGQYMSLHGDVISHVNIS 67 (291)
Q Consensus 3 p~~~~~~~~~~v~~g~~v~l~C~~~~~-~~~~v~W~~~~--~~~~-----~~----~~~---~~~~~~~~~~~~~~l~i~ 67 (291)
|.+...| ...+.+|++++|.|.+.+. +.+.+.|+|.. .... .. ... ..+.........++|.|.
T Consensus 2 ~~v~~~p-~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~ 80 (218)
T 3s96_B 2 LVLTQSS-SASFSLGASAKLTCTLNSQHSTYTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSSSGADRYLSIS 80 (218)
T ss_dssp CSEECCS-EEEEETTSCEEEEEEECGGGTTCCEEEEEECTTSCCEEEEEECTTSCEEECSSCCTTEEEEEETTEEEEEES
T ss_pred CeEEeCC-cEEECCCCcEEEEEECCCCCCCcEEEEEEECCCCCeEEEEEEcccCccccCCCcccceEEecCCceEEEEEc
Confidence 5677777 8899999999999999987 88899999832 1110 00 000 001111113345779999
Q ss_pred ecCCCCCeEEEEEEeCCCC-----ceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCc-eeEE
Q psy14540 68 SVRVEDSGIYQCTATNRVG-----SQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPL-TISW 141 (291)
Q Consensus 68 ~~~~~d~G~y~C~~~~~~~-----~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W 141 (291)
+++.+|+|.|+|.+.+..+ .....+.|.|...+..++ ... ..+....+..|+.++|.|.+..+.|.+ .+.|
T Consensus 81 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P--~~~-~~~~~~~~~~~~~v~L~C~~~g~~p~~~~v~W 157 (218)
T 3s96_B 81 NIQPEDEAIYICGVGDTIKEQFVYVFGGGTKVTVLGQPKSTP--TLT-VFPPSSEELKENKATLVCLISNFSPSGVTVAW 157 (218)
T ss_dssp SCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCCBCC--EEE-EECCCHHHHHTTEEEEEEEEEEEBSSCCEEEE
T ss_pred cCCcccCEEEEEEEecCCCCceeEEEcCcEEEEEecCCCCCc--eEE-eeCCCcccccCCcEEEEEEECcccCCCeEEEE
Confidence 9999999999999987665 334456778875442211 111 111223344678999999996446766 8999
Q ss_pred eECCEeccC
Q psy14540 142 LKNGLPILS 150 (291)
Q Consensus 142 ~~~~~~~~~ 150 (291)
+++|..+..
T Consensus 158 ~k~g~~l~~ 166 (218)
T 3s96_B 158 KANGTPITQ 166 (218)
T ss_dssp EETTEEC--
T ss_pred EECCEECcC
Confidence 999998864
No 137
>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}
Probab=99.89 E-value=1.9e-21 Score=160.81 Aligned_cols=184 Identities=20% Similarity=0.297 Sum_probs=106.5
Q ss_pred eecceeeeecCCcEEEEEEecCCCC----CeeEEEEC--CeecC------C-Ce--e---EeceEEee--ccceEEEEEE
Q psy14540 7 YKFIQQTLQPGPPVSLKCIATGNPT----PHISWKLD--GYPLA------G-DR--F---VMGQYMSL--HGDVISHVNI 66 (291)
Q Consensus 7 ~~~~~~~v~~g~~v~l~C~~~~~~~----~~v~W~~~--~~~~~------~-~~--~---~~~~~~~~--~~~~~~~l~i 66 (291)
..|..+.+.+|++++|.|.+.+.+. ..+.||+. ++.+. . .. . ...+.... .....++|.|
T Consensus 5 ~qp~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I 84 (512)
T 1zvo_C 5 QESGPGLVKPSETLSLTCIVSGGPIRRTGYYWGWIRQPPGKGLEWIGGVYYTGSIYYNPSLRGRVTISVDTSRNQFSLNL 84 (512)
T ss_pred ECCCCEEEcCCCCEEEEEEEcccccCCCCeeEEEEEeCCCCCcEEEEEEecCCCEEECCccCCceEEEecCCCCEEEEEE
Confidence 3467788999999999999986432 67999985 32110 0 00 0 00111111 1234578999
Q ss_pred eecCCCCCeEEEEEEeCCCC-------------ceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCC
Q psy14540 67 SSVRVEDSGIYQCTATNRVG-------------SQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKG 133 (291)
Q Consensus 67 ~~~~~~d~G~y~C~~~~~~~-------------~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~ 133 (291)
.+++.+|+|.|.|.+.+..+ .....+.|.|...+..++ .... ..+.......|+.++|.|.+..+
T Consensus 85 ~~v~~~Dsg~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P-~i~~-~~~~~~~~~~~~~v~L~C~~~g~ 162 (512)
T 1zvo_C 85 RSMSAADTAMYYCARGNPPPYYDIGTGSDDGIDVWGQGTTVHVSSAPTKAP-DVFP-IISGCRHPKDNSPVVLACLITGY 162 (512)
T ss_pred CcCCHHHCEEEEEEEECCCCccccccccccccccccCceEEEecccCCcCC-eEEe-ccCCcccccCCCeEEEEEEEEee
Confidence 99999999999999986532 122445677764321111 1111 11111101246899999999655
Q ss_pred CCCc-eeEEeECCEeccCC-CceEEeccCCc--eEEEEEeeCCCCCceeEEEEEEecCCCCCCc
Q psy14540 134 DPPL-TISWLKNGLPILSD-AEITIRSSGEY--TSSLSIATLSTGHSGNYTCVASNTVASDNHS 193 (291)
Q Consensus 134 ~p~~-~~~W~~~~~~~~~~-~~~~~~~~~~~--~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~ 193 (291)
.|.+ .+.|++++...... ........+.+ ...|.|.....+ .|.|+|.|.|..+.....
T Consensus 163 ~P~p~~v~W~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~-~g~ytC~v~n~~~~~~~~ 225 (512)
T 1zvo_C 163 HPTSVTVTWYMGTQSQPQRTFPEIQRRDSYYMTSSQLSTPLQQWR-QGEYKCVVQHTASKSKKE 225 (512)
T ss_pred ecCceEEEEEcCcccCceEecCceecCCCCEEEEEEEEEcHHHcC-CceEEEEEEeCCCCceEE
Confidence 5765 89999965432100 00011111211 234677666666 888999998887765443
No 138
>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...
Probab=99.89 E-value=9.5e-23 Score=149.49 Aligned_cols=184 Identities=18% Similarity=0.336 Sum_probs=117.6
Q ss_pred CcceeecceeeeecCCcEEEEEEecCCCCCeeEEEEC--CeecC-------------CCeeEeceEEeeccceEEEEEEe
Q psy14540 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLD--GYPLA-------------GDRFVMGQYMSLHGDVISHVNIS 67 (291)
Q Consensus 3 p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~--~~~~~-------------~~~~~~~~~~~~~~~~~~~l~i~ 67 (291)
|.+...+ ...+.+|++++|.|.+. +.+.+.|+++ +..+. ..++.. ......++|.|.
T Consensus 2 ~~v~~~~-~~~v~~G~~v~L~C~~~--~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~-----~~~~~~~~L~I~ 73 (211)
T 3tv3_L 2 SALTQPP-SASGSPGQSITISCTGT--SNNFVSWYQQHAGKAPKLVIYDVNKRPSGVPDRFSG-----SKSGNTASLTVS 73 (211)
T ss_dssp -CCBCCS-EEEECTTCEEEEEEECC--CSSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEE-----EEETTEEEEEEE
T ss_pred ceEEeCc-eEEEcCCCCEEEEEEEC--CCCeEEEEEECCCCCCEEEEEEecccCCCCcCcEEE-----EccCCEEEEEEC
Confidence 4566666 88999999999999998 7889999994 22211 112211 113345789999
Q ss_pred ecCCCCCeEEEEEEeCCCC--ceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCC-CceeEEeEC
Q psy14540 68 SVRVEDSGIYQCTATNRVG--SQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDP-PLTISWLKN 144 (291)
Q Consensus 68 ~~~~~d~G~y~C~~~~~~~--~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p-~~~~~W~~~ 144 (291)
+++.+|+|.|+|.+.+..+ .....+.|.|...+..++ ... ..+....+.+|+.++|.|.+.+..| .+.+.|+++
T Consensus 74 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~P--~v~-~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~ 150 (211)
T 3tv3_L 74 GLQTDDEAVYYCGSLVGNWDVIFGGGTKLTVLGQPKAAP--SVT-LFPPSSEELQANKATLVCLISDFYPGAVTVAWKAD 150 (211)
T ss_dssp SCCGGGCEEEEEEEEETTTEEEECCCEEEEECCSCCBCC--EEE-EECCCHHHHHTTCEEEEEEEEEEBSSCCEEEEEET
T ss_pred CCChhHCEEEEEEEecCCCceeECCCceEEEeCCCCcCC--eeE-ecCCchhhhcCCCeEEEEEeeeecCCCeEEEEEEC
Confidence 9999999999999998776 355566777764321111 111 1122223347999999999953333 689999999
Q ss_pred CEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeee
Q psy14540 145 GLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASN 224 (291)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~ 224 (291)
|..+...... ........|.|.. ...|.|..+..+|+|.|+|.|.|
T Consensus 151 g~~l~~~~~~--------------~~~~~~~~~~~~~--------------------~s~L~i~~~~~~d~g~Y~C~v~~ 196 (211)
T 3tv3_L 151 SSPVKAGVET--------------TTPSKQSNNKYAA--------------------SSYLSLTPEQWKSHRSYSCQVTH 196 (211)
T ss_dssp TEEECTTEEE--------------CCCEECTTSSEEE--------------------EEEEEECHHHHHHSSCEEEEEEE
T ss_pred CeecCCCccc--------------CCceECCCCCEEE--------------------EEEEEEcHHHhCCCCeEEEEEEE
Confidence 9887542110 0011122334432 24577777777788888888888
Q ss_pred CCccCCc
Q psy14540 225 TVASDNH 231 (291)
Q Consensus 225 ~~~~~~~ 231 (291)
..+...+
T Consensus 197 ~~~~~~~ 203 (211)
T 3tv3_L 197 EGSTVEK 203 (211)
T ss_dssp TTEEEEE
T ss_pred CCCCEEe
Confidence 7654433
No 139
>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...
Probab=99.89 E-value=2.3e-22 Score=147.52 Aligned_cols=187 Identities=18% Similarity=0.283 Sum_probs=113.2
Q ss_pred cceeecceeeeecCCcEEEEEEecCCC---CCeeEEEECC--eecC-----CCee---EeceEEeeccceEEEEEEeecC
Q psy14540 4 QLIYKFIQQTLQPGPPVSLKCIATGNP---TPHISWKLDG--YPLA-----GDRF---VMGQYMSLHGDVISHVNISSVR 70 (291)
Q Consensus 4 ~~~~~~~~~~v~~g~~v~l~C~~~~~~---~~~v~W~~~~--~~~~-----~~~~---~~~~~~~~~~~~~~~l~i~~~~ 70 (291)
.++. |....+.+|++++|.|.+.+.+ .+.+.|++++ ..+. .... ...+.........++|.|.+++
T Consensus 3 ~v~~-p~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~ 81 (212)
T 1q0x_L 3 VVTQ-ESALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGDKAALTITGAQ 81 (212)
T ss_dssp CEEE-CSEEEECTTCCEEEEEEESSSCCCGGGCCEEEEEETTTEEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCC
T ss_pred eEEC-CCeEeecCCCCEEEEEEecccccCCCCeEEEEEeCCCCCceEEEEcCcccCCcccccEEEEeeCCEEEEEECCCC
Confidence 3455 8888999999999999998866 4789999853 2210 0000 0011111112344679999999
Q ss_pred CCCCeEEEEEEeCCCCc-eeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCc-eeEEeECCEec
Q psy14540 71 VEDSGIYQCTATNRVGS-QTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPL-TISWLKNGLPI 148 (291)
Q Consensus 71 ~~d~G~y~C~~~~~~~~-~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~~~~~~ 148 (291)
.+|+|.|.|.+.+..+. ......+.|...+..++ ......+ ...+..|+.++|.|.+.+..|.+ .+.|+++|..+
T Consensus 82 ~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~P--~v~~~~~-~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l 158 (212)
T 1q0x_L 82 TEDEAIYFCALWSNNKLVFGGGTKLTVLGQPKSSP--TVTLFPP-SSEELSTAKATLVCTITDFYPGVVTVDWKVDGTPV 158 (212)
T ss_dssp GGGCEEEEEEEECSSCEEECCCEEEEECCSCCBCC--EEEEECC-CHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEE
T ss_pred ccCCEEEEEEEecCchhhcCCCeEEEEecCCCCCC--eeEEeCC-CHHHccCCcEEEEEEEEEEeCCCeEEEEEECCEeC
Confidence 99999999999876543 22344566643321111 1111111 12234689999999995445554 89999999887
Q ss_pred cCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCcc
Q psy14540 149 LSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVAS 228 (291)
Q Consensus 149 ~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~ 228 (291)
...... ........|.|.. .+.|.|..+..+|+|.|+|.|.|....
T Consensus 159 ~~~~~~--------------~~~~~~~~g~~~~--------------------~s~L~i~~~~~~d~g~Y~C~a~n~~~~ 204 (212)
T 1q0x_L 159 TAGMET--------------TQPSKQSNNKYMA--------------------SSYLTLTARAWERHSSYSCQVTHEGHS 204 (212)
T ss_dssp CTTEEE--------------CCCEECTTSCEEE--------------------EEEEEEEHHHHTTCCEEEEEEEETTEE
T ss_pred CCCeec--------------CCceeCCCCCEEE--------------------EEEEEEcHHHccCCCcEEEEEEeCCcc
Confidence 543110 0001122233332 235677777777888888888776543
No 140
>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A
Probab=99.89 E-value=9.3e-23 Score=146.27 Aligned_cols=151 Identities=21% Similarity=0.341 Sum_probs=100.2
Q ss_pred eeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEee-cCCCCCeEEEEEEeCCCCceee
Q psy14540 12 QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISS-VRVEDSGIYQCTATNRVGSQTH 90 (291)
Q Consensus 12 ~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~-~~~~d~G~y~C~~~~~~~~~~~ 90 (291)
..+.+|+++.|.|.+.+ + +.+.|+|+|..+.... + .+|.|.+ ++.+|+|.|+|.+.+..|....
T Consensus 9 ~v~~~G~~v~L~C~~~~-~-~~i~W~k~g~~l~~~~-----------~--~~L~I~~~~~~~D~G~Y~C~a~n~~g~~~~ 73 (186)
T 1jbj_A 9 KVSISGTSVELTCPLDS-D-ENLKWEKNGQELPQKH-----------D--KHLVLQDFSEVEDSGYYVCYTPASNKNTYL 73 (186)
T ss_dssp EEEEETTEEEEECSSCC-C-TTCEEEETTEEECSCC-----------C--SEEEEESCCTTTSCEEEEEECSSCCCCCCE
T ss_pred EEEeCCcEEEEEEeCCC-C-CceEEEECCEECCCCC-----------C--CEEEECCCCccccCEEEEEEEEeCCCcEEE
Confidence 34578999999999886 3 3499999999877421 0 1489999 9999999999999988777555
Q ss_pred eeeEEEEcCCCCCccc-------------ce--eccCCcc---eeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCC
Q psy14540 91 SADMRVYDAPGQPQDV-------------KL--VTSNSRS---IKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDA 152 (291)
Q Consensus 91 ~~~l~v~~~~~~~~~~-------------~~--~~~~~~~---~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~ 152 (291)
...+.|.......... .. ....... ..+.+|+.+.|.|.+ |.+.+.|+++|..+....
T Consensus 74 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~l~C~~----p~p~i~W~k~g~~i~~~~ 149 (186)
T 1jbj_A 74 YLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLTCGL----TDKTIKWLKDGSIISPLN 149 (186)
T ss_dssp EECCCCCSCCCCCCCCCCCCCCSCCSSSTTCCSCCCCSSCCEECCCSSSCEEEEECSS----SCSCEEEEETTEECCCSS
T ss_pred EEEEEEecccccccccccccccccCCccccccccccccccccceecCCCCeEEEEeeC----CCCeEEEEECCEECcccC
Confidence 5555444322111000 00 0000001 234499999999987 778999999999876332
Q ss_pred ceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCC
Q psy14540 153 EITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVAS 189 (291)
Q Consensus 153 ~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 189 (291)
. ....|.|..+..+|.|.|+|.|.|..|.
T Consensus 150 ~--------~~~~L~i~~v~~~D~G~Y~C~a~N~~g~ 178 (186)
T 1jbj_A 150 A--------TKNTWNLGNNAKDPRGTYQCQGAKETSN 178 (186)
T ss_dssp C--------CSSCCEEEETTSCCEEEEEEEESSCEEE
T ss_pred C--------CcceEEECCCCcCcCEEEEEEEEcCcCC
Confidence 1 2334666666666666666666665543
No 141
>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4
Probab=99.89 E-value=5.5e-22 Score=150.49 Aligned_cols=216 Identities=15% Similarity=0.192 Sum_probs=109.6
Q ss_pred ceeecceeeeecCCcEEEEEEecCCCCCeeEEEEC--CeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEe
Q psy14540 5 LIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLD--GYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTAT 82 (291)
Q Consensus 5 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~ 82 (291)
+.+.|....|.+|+++.|.|.+.......+.|.-. +..+. ..+.....+.|.+++.+ |.|+|++.
T Consensus 2 ~~v~P~~~~V~~G~sv~l~Cs~~c~~p~~~~~~t~l~~~~~~-----------~~g~~~~~~~l~~v~~~--~~y~C~~~ 68 (291)
T 1mq8_A 2 TSVSPSKVILPRGGSVLVTCSTSCDQPKLLGIETPLPKKELL-----------LPGNNRKVYELSNVQED--SQPMCYSN 68 (291)
T ss_dssp EEEECSEEEECTTCEEEEEEEECCSSCSEEEEECSSCCCCCC-----------CSCSSEEEEEEESCCSC--CCCEEEEE
T ss_pred eEEeCCccEEcCCCeEEEEEeCCCCCCccceEEecCCCcccc-----------cCCCceEEEEEEecccC--CeEEEEEE
Confidence 45678888999999999999997433334888531 11110 01112234678887743 56999997
Q ss_pred CCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCc--eeEEeECCEeccCCCceEEeccC
Q psy14540 83 NRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPL--TISWLKNGLPILSDAEITIRSSG 160 (291)
Q Consensus 83 ~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~--~~~W~~~~~~~~~~~~~~~~~~~ 160 (291)
.........+.+.|..+|..+... .....+.+|+.++|.|.+.++.|.. .|+|+++++.+..... ...
T Consensus 69 ~~~~~~~~~v~l~V~~~P~~v~I~------~~~~~~~~G~~~~LtC~v~g~~P~~~l~itW~kg~~~l~~~~~----~~~ 138 (291)
T 1mq8_A 69 CPDGQSTAKTFLTVYWTPERVELA------PLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPA----VGE 138 (291)
T ss_dssp CSSCEEEEECEEEECBCCSCCCBC------CCCSBCCSSCCCEEEEEECCCBSTTTEEEEEESSSSEEEEEEC----CBT
T ss_pred cCCccEEEEEEEEEecCCCCCEEe------cCCccccCCCCEEEEEEecCccCCCCcEEEEEECCEEeecccC----CCC
Confidence 554456777788988877543211 1113477899999999997777765 5899999977642210 000
Q ss_pred CceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCc--------cCCce
Q psy14540 161 EYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVA--------SDNHS 232 (291)
Q Consensus 161 ~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~--------~~~~~ 232 (291)
. ...++.+...+.+|++.|+|+|.+..+ ..+..
T Consensus 139 ~---------------------------------------~~~~l~~~~~~~D~g~~~~C~A~~~l~~~g~~l~~~~s~~ 179 (291)
T 1mq8_A 139 P---------------------------------------AEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAP 179 (291)
T ss_dssp T---------------------------------------EEEEEECCCSSSCSSCEEEEEEEEECGGGTSCEEEECCCC
T ss_pred C---------------------------------------ceEEEEeeeeeccCCceEEEEEEecCCccCCccccccccc
Confidence 0 022355555666777788888887543 25677
Q ss_pred eEEEEecCCCCCC--CCcccccCCceEEEEEEeecCC-CCc--eEEEEECCEEccC
Q psy14540 233 SNLRVNVPPHIGP--FTFGELMEGVRTQVACVVQSGD-LPL--SLQWYKNGLAISQ 283 (291)
Q Consensus 233 ~~l~v~~~p~~~~--~~~~~~~~g~~v~l~C~~~~~~-p~~--~v~W~~~~~~l~~ 283 (291)
..|.|+++|...+ .....+.+|+.++|+|.+ .|. |++ .+.|++||+.+..
T Consensus 180 ~~L~V~~~P~~~~~~~~p~~l~eG~~v~l~C~~-~g~~P~~~~~v~w~~~g~~l~~ 234 (291)
T 1mq8_A 180 YQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSL-DGLFPVSEAQVHLALGDQRLNP 234 (291)
T ss_dssp EECBC---------------------------------------------------
T ss_pred eEEEEEecCCCCceecCCcCccCCCeEEEEEEc-CCCCCCcccEEEEEECCEecCc
Confidence 7888888753321 111248899999999999 655 443 6999999998863
No 142
>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.89 E-value=1.9e-21 Score=144.93 Aligned_cols=204 Identities=16% Similarity=0.163 Sum_probs=119.8
Q ss_pred CCCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEE
Q psy14540 1 SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCT 80 (291)
Q Consensus 1 s~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~ 80 (291)
.+|.|...|.. .+.+|++|+|.|.+.+ +...+.|+|++..+...... .........|.|.+++.+|+|.|+|.
T Consensus 6 ~kP~i~~~P~~-~v~~G~~VtL~C~~~~-~~~~~~w~k~g~~~~~~~~~-----~~~~~~~~~L~I~~v~~~DsG~Y~C~ 78 (242)
T 1p6f_A 6 PKPFIWAEPHF-MVPKEKQVTICCQGNY-GAVEYQLHFEGSLFAVDRPK-----PPERINKVKFYIPDMNSRMAGQYSCI 78 (242)
T ss_dssp CCCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTEEEEEECCS-----SCTTCCEEEEEECSCCGGGCEEEEEE
T ss_pred CCCEEEeeCCC-ccCCCCcEEEEEeeCC-CCcEEEEEECCCcccccccc-----ccCCcceeEEEecCCCcccCeEEEEE
Confidence 36888888877 8999999999999864 45689999999765410000 01112335699999999999999999
Q ss_pred EeCCCC--ceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEec
Q psy14540 81 ATNRVG--SQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRS 158 (291)
Q Consensus 81 ~~~~~~--~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~ 158 (291)
+.+..+ ..+..+.|.|......| ... ..+ ...+.+|+.++|.|.+ .+ +.+.+.|+|+|..+... ..
T Consensus 79 ~~~~~~~s~~S~~~~L~V~~~~~~P--~i~--~~p-~~~v~~G~~vtL~C~~-~~-~~~~~~w~k~g~~~~~~----~~- 146 (242)
T 1p6f_A 79 YRVGELWSEPSNLLDLVVTEMYDTP--TLS--VHP-GPEVISGEKVTFYCRL-DT-ATSMFLLLKEGRSSHVQ----RG- 146 (242)
T ss_dssp EEETTEECCCCCCEEEEEECCSCCC--EEE--EES-CSEEETTCEEEEEEEC-TT-SCSEEEEEECSSSCEEE----EE-
T ss_pred EecCCccccCCcceEEEeecccCCC--ceE--ccC-CCccCCCCcEEEEEec-CC-CCCEEEEEECCCccCcc----cc-
Confidence 976433 23455677776543222 111 112 2457899999999998 34 34699999998765320 00
Q ss_pred cCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCC---ccCCceeEE
Q psy14540 159 SGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTV---ASDNHSSNL 235 (291)
Q Consensus 159 ~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~---~~~~~~~~l 235 (291)
... ....|.|.++..+|+|.|+|.+.|.. ...+..+.|
T Consensus 147 ~~~---------------------------------------~~~~l~I~~v~~~d~G~Y~C~a~n~~~~~s~~S~~~~l 187 (242)
T 1p6f_A 147 YGK---------------------------------------VQAEFPLGPVTTAHRGTYRCFGSYNNHAWSFPSEPVKL 187 (242)
T ss_dssp ECS---------------------------------------SEEEEEEEECCGGGCEEEEEEEEEETTEECCCCCCEEE
T ss_pred CCC---------------------------------------ceEEEEeCCCccccCEEEEEEEECCCCcccCCCCCEEE
Confidence 001 13456666777777777777776642 466777778
Q ss_pred EEecC---CCCCCCCcccccCCceEEEEEE
Q psy14540 236 RVNVP---PHIGPFTFGELMEGVRTQVACV 262 (291)
Q Consensus 236 ~v~~~---p~~~~~~~~~~~~g~~v~l~C~ 262 (291)
.|..+ |.+.+........+..+.|.+.
T Consensus 188 ~V~~~~~~P~l~~~~~~~~~~~~~~~~~~~ 217 (242)
T 1p6f_A 188 LVTGDIENTSLAPEDPTFPADTWGTYLLTT 217 (242)
T ss_dssp EEEC--------------------------
T ss_pred EEeccCCCCcccCcCCCccccccccccccc
Confidence 87753 4444333322333444555444
No 143
>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*
Probab=99.89 E-value=1.8e-23 Score=157.20 Aligned_cols=204 Identities=13% Similarity=0.167 Sum_probs=118.8
Q ss_pred Ccce-eecceeeeecCCcEEEEEEecCCCCCe-----eEEEECCeecCCCeeEe----ceEEe----------eccceEE
Q psy14540 3 PQLI-YKFIQQTLQPGPPVSLKCIATGNPTPH-----ISWKLDGYPLAGDRFVM----GQYMS----------LHGDVIS 62 (291)
Q Consensus 3 p~~~-~~~~~~~v~~g~~v~l~C~~~~~~~~~-----v~W~~~~~~~~~~~~~~----~~~~~----------~~~~~~~ 62 (291)
|.+. ..|..+.+.+|++++|.|.+.+.|.+. +.|++++.......... ..... ......+
T Consensus 3 ~~v~v~~p~~~~v~~G~~v~L~C~~~g~p~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (248)
T 3pv7_A 3 LKVEMMAGGTQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWRLKSGDA 82 (248)
T ss_dssp EEEECSTTSEEEEETTSCEEECCEEEESSCCCTTSCEEEEEEECSSCCCEEEEEEEESSCEEESSTTCBCCHHHHTTTBC
T ss_pred eEEEEeCCCCeEEeCCCCEEEeeEEecCCCcCCCceEEEEEEEcCCCCcceEEEEecCCcccccCCceEEEeccCCCCcE
Confidence 4443 455667899999999999997765554 99999643221100000 00000 0112235
Q ss_pred EEEEeecCCCCCeEEEEEEeCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCc-eeEE
Q psy14540 63 HVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPL-TISW 141 (291)
Q Consensus 63 ~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W 141 (291)
+|.|.+++.+|+|.|+|.+.+..+.....+.|.|...|.. .. . +. ..+..|+.+.|.|.+..++|.+ .+.|
T Consensus 83 sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~L~V~~~P~v-----~~-~-~~-~~~~~~~~~~L~C~~~g~~P~pi~v~W 154 (248)
T 3pv7_A 83 SLRLPGIQLEEAGEYRCEVVVTPLKAQGTVQLEVVASPAS-----RL-L-LD-QVGMKENEDKYMCESSGFYPEAINITW 154 (248)
T ss_dssp CEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEBCCEE-----EE-E-CC---------CEEEEEEEEEBSSCCEEEE
T ss_pred EEEeCCCCHHHCeEEEEEEEeCCccceeEEEEEEecCCce-----EE-e-cC-CccccCCCcEEEEEEccEECCCeEEEE
Confidence 6999999999999999999987777777888888875421 11 1 11 2344678889999995448888 9999
Q ss_pred eECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEE
Q psy14540 142 LKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCV 221 (291)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~ 221 (291)
++++..+...... .. . ...........|.|.+ ...|.+.....+|+|.|+|.
T Consensus 155 ~k~g~~l~~~~~~--~~---~---~~~~~~~~~~~~~~~~--------------------~s~L~i~~~~~~d~g~YtC~ 206 (248)
T 3pv7_A 155 EKQTQKFPHPIEI--SE---D---VITGPTIKNMDGTFNV--------------------TSCLKLNSSQEDPGTVYQCV 206 (248)
T ss_dssp EEECSSSCSCEEE--CT---T---EEEEEEEECTTSCEEE--------------------EEEEECC--CCCTTCEEEEE
T ss_pred EECCccCCCcccc--cc---c---eeecccEECCCCCEEE--------------------EEEEEEcCccccCCCEEEEE
Confidence 9999766432110 00 0 0001111223355544 34677888888999999999
Q ss_pred eeeCCccCC--ceeEEEEecCCCC
Q psy14540 222 ASNTVASDN--HSSNLRVNVPPHI 243 (291)
Q Consensus 222 ~~~~~~~~~--~~~~l~v~~~p~~ 243 (291)
|.|..+... ..+.|.| ..|.+
T Consensus 207 a~n~~~~~~~~~~v~l~V-~~p~~ 229 (248)
T 3pv7_A 207 VRHASLHTPLRSNFTLTA-ARHSL 229 (248)
T ss_dssp EECTTCSSCEEEEECC--------
T ss_pred EECCCCCCCcEEEEEEEE-cCCCC
Confidence 999886544 4555555 33444
No 144
>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}
Probab=99.89 E-value=4.4e-22 Score=150.20 Aligned_cols=141 Identities=18% Similarity=0.311 Sum_probs=93.4
Q ss_pred CCcceeecceeeeecCCcEEEEEEecCCC-----CCeeEEEECC--eecC-------------CCeeEeceEEeeccceE
Q psy14540 2 HPQLIYKFIQQTLQPGPPVSLKCIATGNP-----TPHISWKLDG--YPLA-------------GDRFVMGQYMSLHGDVI 61 (291)
Q Consensus 2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~-----~~~v~W~~~~--~~~~-------------~~~~~~~~~~~~~~~~~ 61 (291)
+|.+...|....+.+|++++|.|.+.+.+ .+.+.|++++ ..+. ..++.. ......
T Consensus 38 ~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~-----~~~~~~ 112 (254)
T 2c1o_A 38 ELVMTQSPLTLSVTIGQPASISCKSSQSLLYSNGKTYLNWLLQRPGQSPKRLIYLVSKLDSGDPDRFTG-----SGSGTD 112 (254)
T ss_dssp CCCEEEECSEEEECTTSCEEEEEEESSCCBCSSSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEE-----EEETTE
T ss_pred ceeEEeCCceEEecCCCcEEEEeeccCcccccCCCCceEEEEeCCCCCceEEEEeccccCCCccceEEE-----ecCCCE
Confidence 46677778889999999999999998866 4889999843 2211 112211 123345
Q ss_pred EEEEEeecCCCCCeEEEEEEeCCCCce-eeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCC-cee
Q psy14540 62 SHVNISSVRVEDSGIYQCTATNRVGSQ-THSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPP-LTI 139 (291)
Q Consensus 62 ~~l~i~~~~~~d~G~y~C~~~~~~~~~-~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~-~~~ 139 (291)
++|.|.+++.+|+|.|+|.+.+..+.. .....+.|......| ......+. .....|+.++|.|.+.+..|. +.+
T Consensus 113 ~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~~~P---~v~~~~~~-~~~~~g~~v~l~C~~~g~~p~~~~v 188 (254)
T 2c1o_A 113 FTLKISRVEAEDLGIYYCVQGSHFPPTFGAGTKLELKRADAAP---TVSIFPPS-SEQLTSGGASVVCFLNNFYPKDINV 188 (254)
T ss_dssp EEEEESSCCGGGCSEEEEEECSSSSCEEBCCEEEEECCCCBCC---EEEEECCC-HHHHHTTEEEEEEEEEEEBSSCCEE
T ss_pred EEEEECcCCcccCEEEEEEEEcCcceEecCCEEEEECCCCCCC---eeEeecCC-hhhccCCcEEEEEEEecccCCCcEE
Confidence 689999999999999999998765432 233456665433222 11111111 223357899999999543554 579
Q ss_pred EEeECCEeccCC
Q psy14540 140 SWLKNGLPILSD 151 (291)
Q Consensus 140 ~W~~~~~~~~~~ 151 (291)
.|+++|..+...
T Consensus 189 ~W~k~g~~l~~~ 200 (254)
T 2c1o_A 189 KWKIDGSERQNG 200 (254)
T ss_dssp EEEESSSEECTT
T ss_pred EEEECCCcccCc
Confidence 999999887543
No 145
>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...
Probab=99.89 E-value=5e-22 Score=146.17 Aligned_cols=193 Identities=13% Similarity=0.221 Sum_probs=114.9
Q ss_pred cceeecceeeeecCCcEEEEEEecC-CC-CCeeEEEECC--eecC-----C----CeeEeceEEeeccceEEEEEEeecC
Q psy14540 4 QLIYKFIQQTLQPGPPVSLKCIATG-NP-TPHISWKLDG--YPLA-----G----DRFVMGQYMSLHGDVISHVNISSVR 70 (291)
Q Consensus 4 ~~~~~~~~~~v~~g~~v~l~C~~~~-~~-~~~v~W~~~~--~~~~-----~----~~~~~~~~~~~~~~~~~~l~i~~~~ 70 (291)
.+.. |....+.+|++++|.|.+.+ .+ .+.+.|++++ ..+. . ... ..+.........++|.|.+++
T Consensus 3 ~v~q-p~~~~v~~G~~v~L~C~v~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~-~~r~~~~~~~~~~~L~I~~v~ 80 (216)
T 2xzc_L 3 VLTQ-PPSVSAAPGQKVTISCSGSSSNIGNNYVSWYQQLPGTAPKLLIYDNNKRPSGI-PDRFSGSKSGTSATLGITGLQ 80 (216)
T ss_dssp CBBC-CSEEEECTTCCEEEEEECCTTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTC-CTTEEEEEETTEEEEEECSCC
T ss_pred cEEC-CCcEEecCCCeEEEEEEeecCCCCCCeEEEEEeCCCCCcEEEEEecCccCCCC-CCceEEeccCCEEEEEECCCC
Confidence 3444 77889999999999999543 32 5789999953 2110 0 000 011111123345689999999
Q ss_pred CCCCeEEEEEEeCCCC--ceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCc-eeEEeECCEe
Q psy14540 71 VEDSGIYQCTATNRVG--SQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPL-TISWLKNGLP 147 (291)
Q Consensus 71 ~~d~G~y~C~~~~~~~--~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~~~~~ 147 (291)
.+|+|.|+|.+.+..+ .......|.|...+..| ......+. .....|+.++|.|.+.++.|.+ .+.|+++|..
T Consensus 81 ~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~P---~v~~~~~~-~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~ 156 (216)
T 2xzc_L 81 TGDEADYYCGTWDSSLNPVFGGGTKLEIKRTVAAP---SVFIFPPS-DEQLKSGTASVVCLLNNFYPREAKVQWKVDNAL 156 (216)
T ss_dssp GGGCEEEEEEEECTTSCEEEBCCEEEEECCCCBCC---EEEEECCC-HHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEE
T ss_pred cccCEEEEEEEEeCCCcceECCCEEEEEcCCCCCC---ceEEeCCC-hhhccCCcEEEEEEEEeEcCCceEEEEEECCee
Confidence 9999999999998765 22334566775432222 11111111 1223588999999995446664 8999999998
Q ss_pred ccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCc
Q psy14540 148 ILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVA 227 (291)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~ 227 (291)
+....... ........|.|.. .+.|.|..+..+|+|.|+|.|.|...
T Consensus 157 ~~~~~~~~-------------~~~~~~~~g~~~~--------------------~s~L~i~~~~~~d~g~Y~C~a~n~~~ 203 (216)
T 2xzc_L 157 QSGNSQES-------------VTEQDSKDSTYSL--------------------SSTLTLSKADYEKHKVYACEVTHQGL 203 (216)
T ss_dssp CCSSEEEE-------------ECCCCTTTCCEEE--------------------EEEEEEEHHHHTTCCEEEEEEECTTC
T ss_pred cCCCeeEe-------------cCcccCCCCCEEE--------------------EEEEEECHHHhCCCCcEEEEEEcCCC
Confidence 75431110 1111223344432 23566777777777777777777664
Q ss_pred cCCceeEE
Q psy14540 228 SDNHSSNL 235 (291)
Q Consensus 228 ~~~~~~~l 235 (291)
.......+
T Consensus 204 ~~~~~~~i 211 (216)
T 2xzc_L 204 SSPVTKSF 211 (216)
T ss_dssp SSCEEEEE
T ss_pred CCceEEec
Confidence 44444443
No 146
>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L
Probab=99.89 E-value=7.6e-22 Score=148.64 Aligned_cols=190 Identities=16% Similarity=0.233 Sum_probs=118.5
Q ss_pred CcceeecceeeeecCCcEEEEEEecCCC-----CCeeEEEECCe--ecC-----CCeeE---eceEEeeccceEEEEEEe
Q psy14540 3 PQLIYKFIQQTLQPGPPVSLKCIATGNP-----TPHISWKLDGY--PLA-----GDRFV---MGQYMSLHGDVISHVNIS 67 (291)
Q Consensus 3 p~~~~~~~~~~v~~g~~v~l~C~~~~~~-----~~~v~W~~~~~--~~~-----~~~~~---~~~~~~~~~~~~~~l~i~ 67 (291)
+.+...|..+.+.+|++++|.|.+.+.+ .+.+.|+|++. .+. ..... ..+.........++|.|.
T Consensus 35 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~ 114 (252)
T 3bkj_L 35 VLMTQTPLSLPVNLGEQASISCRSSQSIVHSNGHTYLEWYLQRPGQSPKLLIYQVSTRFSGVPDRFSGSGSGTDFTLRIS 114 (252)
T ss_dssp CCEEEECSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEES
T ss_pred cEEEeCCceEEEeCCCcEEEEEEcCCCccccCCCCcEEEEEECCCCCcEEEEEcCCcccCCcCCceEEEccCCEEEEEEC
Confidence 4556668888999999999999998866 58899999541 110 00000 011111122344689999
Q ss_pred ecCCCCCeEEEEEEeCCCCc-eeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCc-eeEEeECC
Q psy14540 68 SVRVEDSGIYQCTATNRVGS-QTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPL-TISWLKNG 145 (291)
Q Consensus 68 ~~~~~d~G~y~C~~~~~~~~-~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~~~ 145 (291)
+++.+|+|.|+|.+.+..+. ......+.|......| ......+. ..+.+|+.++|.|.+....|.+ .+.|+++|
T Consensus 115 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~P---~v~~~~~~-~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g 190 (252)
T 3bkj_L 115 RVEAEDLGVYYCFQASLVPLTFGAGTKLELKRADAAP---TVSIFPPS-SEQLTSGGASVVCFLNNFYPKDINVKWKIDG 190 (252)
T ss_dssp SCCGGGCEEEEEEECSBSSCEECCCEEEEECCCCBCC---EEEEECCC-HHHHHHTEEEEEEEEEEEBSSCCEEEEEETT
T ss_pred CCCcccCEEEEEEEEcCCccEECCCEEEEEeCCCcCc---EEEEeCCC-hhhcCCCcEEEEEEEeeEeCCCcEEEEEECC
Confidence 99999999999999876442 2233466775433222 11111111 2234689999999995446654 89999999
Q ss_pred EeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeC
Q psy14540 146 LPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNT 225 (291)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~ 225 (291)
..+..... ..........|.|.. .+.|.|..+..+|+|.|+|.|.|.
T Consensus 191 ~~~~~~~~-------------~~~~~~~~~~g~~~~--------------------~s~L~i~~~~~~d~g~Y~C~a~n~ 237 (252)
T 3bkj_L 191 SERQNGVL-------------NSWTDQDSKDSTYSM--------------------SSTLTLTKDEYERHNSYTCEATHK 237 (252)
T ss_dssp EEECSSEE-------------EEECCCCTTTCCEEE--------------------EEEEEEEHHHHHHCCEEEEEEECT
T ss_pred eecCCCee-------------eecCcccCCCCCEEE--------------------EEEEEEcchhccCCCeEEEEEEeC
Confidence 88753311 011122233344433 346788888888889999998887
Q ss_pred CccC
Q psy14540 226 VASD 229 (291)
Q Consensus 226 ~~~~ 229 (291)
....
T Consensus 238 ~~~~ 241 (252)
T 3bkj_L 238 TSTS 241 (252)
T ss_dssp TCSS
T ss_pred CCCC
Confidence 6443
No 147
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*
Probab=99.89 E-value=9.6e-22 Score=151.16 Aligned_cols=188 Identities=18% Similarity=0.250 Sum_probs=124.6
Q ss_pred ceeecceeeeecCCcEEEEEEecCCCCCe-eEEEE-CCeecC-CCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEE
Q psy14540 5 LIYKFIQQTLQPGPPVSLKCIATGNPTPH-ISWKL-DGYPLA-GDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTA 81 (291)
Q Consensus 5 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~-v~W~~-~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~ 81 (291)
+...+....+.+|+.+.|.|.+.+.+.+. +.|++ ++..+. ..++.. .. . ..|.|.+++.+|+|.|+|.+
T Consensus 92 ~~~~~~~~~v~~g~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~-----~~-~--~~L~i~~v~~~d~G~Y~C~a 163 (289)
T 3ejj_X 92 WNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFF-----SP-W--RGFIIRKAKVLDSNTYVCKT 163 (289)
T ss_dssp EEESCSEEEEETTSCEEECEEESCGGGGGSEEEEEGGGEECCTTCCEEE-----ET-T--TEEEESSCCGGGCEEEEEEE
T ss_pred eecccceEEEecCCceEeEEEccCCCcceEEEEEecCCeecCCCccEEE-----CC-C--CCEEEeecccccCEEEEEEE
Confidence 45566778899999999999999855554 99987 666655 222222 11 1 23889999999999999999
Q ss_pred e-CCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccC
Q psy14540 82 T-NRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSG 160 (291)
Q Consensus 82 ~-~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~ 160 (291)
. +..+.....+.|.|......++ .....+....+.+|+.+.|.|.+..+.|.+.+.|++++..+............
T Consensus 164 ~~~~~~~~~~~~~l~V~~~~~~~p---~i~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~ 240 (289)
T 3ejj_X 164 MVNGRESTSTGIWLKVNRVHPEPP---QIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDNY 240 (289)
T ss_dssp EETTEEEECCCEEEEEESSCCCCC---EEEEESSSEECCSSSCEEEEEEEEESSSCCEEEEEETTEECCCCEEEEECSSS
T ss_pred EeCCCccccccEEEEEEECCCCCC---eEEecCCceEEEeCCcEEEEEEeCCCCCceEEEEEECCEEeeccCCcccccce
Confidence 8 4445566777888875432221 12222344566789999999999544889999999999887543221110000
Q ss_pred CceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecC
Q psy14540 161 EYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVP 240 (291)
Q Consensus 161 ~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~ 240 (291)
+ .....|.|.++..+|+|.|+|.|.|..|....++.|.+..+
T Consensus 241 ------------------~--------------------~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~s~~L~~~~~ 282 (289)
T 3ejj_X 241 ------------------Y--------------------KKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVVES 282 (289)
T ss_dssp ------------------E--------------------EEEEEEEESSCCSSSCEEEEEEEECSSCEEEEEEEEECC--
T ss_pred ------------------E--------------------EeeEEEEEEeecccCCEEEEEEEEcCCCCccccEEEEEEec
Confidence 0 01345666777777777777777777777777777776654
Q ss_pred C
Q psy14540 241 P 241 (291)
Q Consensus 241 p 241 (291)
+
T Consensus 283 ~ 283 (289)
T 3ejj_X 283 H 283 (289)
T ss_dssp -
T ss_pred c
Confidence 4
No 148
>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}
Probab=99.89 E-value=5.9e-23 Score=151.82 Aligned_cols=193 Identities=17% Similarity=0.336 Sum_probs=119.4
Q ss_pred ceeeeecCCcEEEEEEecCCCC-----CeeEEEECCeecC-----CCeeE----eceEEeec---cceEEEEEEeecCCC
Q psy14540 10 IQQTLQPGPPVSLKCIATGNPT-----PHISWKLDGYPLA-----GDRFV----MGQYMSLH---GDVISHVNISSVRVE 72 (291)
Q Consensus 10 ~~~~v~~g~~v~l~C~~~~~~~-----~~v~W~~~~~~~~-----~~~~~----~~~~~~~~---~~~~~~l~i~~~~~~ 72 (291)
.++.+.+|++++|.|.+.+.+. +.+.|++++.... ..... ..+..... ..+..+|.|.+++.+
T Consensus 3 ~~v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~~ 82 (222)
T 4i0k_A 3 DPVVALVDTDATLRCSFSPEPGFSLAQLNLIWQLTDTKQLVHSFTEGRDQGSAYSNRTALFPDLLVQGNASLRLQRVRVT 82 (222)
T ss_dssp CCCCCCTTSCEEECCBCCCCTTCCTTTEEEEEEETTTCCEEEEEETTEEEEESSCSCEECCTTTGGGTBCCEEECSCCGG
T ss_pred CCEEEECCCCeEEEEEecCCCCCCCCceEEEEEECCCccEEEEEcCCcccccceeCcEEEecccccCCeEEEEECCcccc
Confidence 3467899999999999887543 6799999764331 00000 00000000 112466999999999
Q ss_pred CCeEEEEEEeCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeE-CCEeccCC
Q psy14540 73 DSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLK-NGLPILSD 151 (291)
Q Consensus 73 d~G~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~-~~~~~~~~ 151 (291)
|+|.|+|.+.+. +.....+.|.|...+..|. ... .....+.+|+.++|.|.+..+.|.+.+.|++ ++..+...
T Consensus 83 D~G~Y~C~~~~~-~~~~~~~~l~V~~~~~~p~----i~~-~~~~~v~~G~~~~l~C~~~~g~P~~~v~W~~~~~~~~~~~ 156 (222)
T 4i0k_A 83 DEGSYTCFVSIQ-DFDSAAVSLQVAAPYSKPS----MTL-EPNKDLRPGNMVTITCSSYQGYPEAEVFWKDGQGVPLTGN 156 (222)
T ss_dssp GCSCEEEEEEEC-CCCCCCCCCCCCBCCCCCE----EEC-CC-----CCSEEEEEEEEEEEBSCCEEEEECTTSCBCCSE
T ss_pred cCEEEEEEEEeC-CCceEEEEEEEEcCCCCCc----EEe-CCCceecCCceEEEEEecccccCCCeEEEEcCCCccCCCC
Confidence 999999999864 3445556666665543331 111 1223567899999999996688999999998 44444221
Q ss_pred CceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCc
Q psy14540 152 AEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNH 231 (291)
Q Consensus 152 ~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~ 231 (291)
...... ....|.| ..|.|.++..+|.|.|+|.|.|..+....
T Consensus 157 ~~~~~~---------------~~~~~~~-----------------------~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~ 198 (222)
T 4i0k_A 157 VTTSQM---------------ANERGLF-----------------------DVHSVLRVVLGANGTYSCLVRNPVLQQDA 198 (222)
T ss_dssp EEEEEE---------------ECTTSCE-----------------------EEEEEEEEECCTTCEEEEEEEETTTTEEE
T ss_pred cceeEE---------------cCCCCeE-----------------------EEEEEEEEEeCCCCEEEEEEECCCCCCce
Confidence 111000 0111222 24678888899999999999999998888
Q ss_pred eeEEEEecCCCCCCC
Q psy14540 232 SSNLRVNVPPHIGPF 246 (291)
Q Consensus 232 ~~~l~v~~~p~~~~~ 246 (291)
++.|.|..+|.....
T Consensus 199 ~~~l~V~~~p~~~~~ 213 (222)
T 4i0k_A 199 HGSVTITGQPLTFPP 213 (222)
T ss_dssp EEEEECCC-------
T ss_pred EEEEEEeCCccccCC
Confidence 899998877755443
No 149
>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*
Probab=99.88 E-value=3.4e-22 Score=145.38 Aligned_cols=133 Identities=16% Similarity=0.222 Sum_probs=89.9
Q ss_pred eeeeecCCcEEEEEEecC----CCCCeeEEEECCeecC---CCeeEe-c---eEEeeccceEEEEEEeecCCCCCeEEEE
Q psy14540 11 QQTLQPGPPVSLKCIATG----NPTPHISWKLDGYPLA---GDRFVM-G---QYMSLHGDVISHVNISSVRVEDSGIYQC 79 (291)
Q Consensus 11 ~~~v~~g~~v~l~C~~~~----~~~~~v~W~~~~~~~~---~~~~~~-~---~~~~~~~~~~~~l~i~~~~~~d~G~y~C 79 (291)
++.+.+|++++|.|.+.. .+.+.+.|++++..+. ...... . .+.........+|.|.+++.+|+|.|+|
T Consensus 3 ~v~v~~G~~v~L~C~~~~~~~~~~~~~~~W~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~L~I~~v~~~D~G~Y~C 82 (201)
T 1dr9_A 3 HVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTYEC 82 (201)
T ss_dssp EEEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEESTTTTEEEECSCCGGGCEEEEE
T ss_pred eEEEEeCCCEEEecccCCCcccccccEEEEEeCCcEEEEEeCCceeecCcccceeEEccCCCcEEEEecccchhCeEEEE
Confidence 467899999999999863 3567899999987653 111000 0 0000001123469999999999999999
Q ss_pred EEeCCCCce-----eeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCC
Q psy14540 80 TATNRVGSQ-----THSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSD 151 (291)
Q Consensus 80 ~~~~~~~~~-----~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~ 151 (291)
.+.+..+.. ...+.|.|...+..|. ... .....|+.+.|.|.+..++|.|.+.|+++|..+...
T Consensus 83 ~~~~~~g~~~~~~~~~~~~l~V~~~~~~p~--~~~------~~~~~g~~~~l~C~~~~g~P~p~i~W~k~g~~l~~~ 151 (201)
T 1dr9_A 83 VVLKYEKDAFKREHLAEVTLSVKADFPTPS--ISD------FEIPTSNIRRIICSTSGGFPEPHLSWLENGEELNAI 151 (201)
T ss_dssp EEEECCTTSCEEEEEEEEEEEEECCCCCCE--EEE------EECSSTTEEEEEEEEEEESSCEEEEEEESSCEECCS
T ss_pred EEEcCCCCccccccccEEEEEEcCCCCCCc--eEe------ccCCCCCeEEEEEecCCccCCCEEEEEECCEECccc
Confidence 999866543 3466777766543221 111 112458899999999558999999999999887643
No 150
>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Probab=99.88 E-value=2.3e-22 Score=149.83 Aligned_cols=144 Identities=17% Similarity=0.284 Sum_probs=89.8
Q ss_pred CcceeecceeeeecCCcEEEEEEecCCC-CC-eeEEEECC--eecC---------CCeeEeceEEeeccceEEEEEEeec
Q psy14540 3 PQLIYKFIQQTLQPGPPVSLKCIATGNP-TP-HISWKLDG--YPLA---------GDRFVMGQYMSLHGDVISHVNISSV 69 (291)
Q Consensus 3 p~~~~~~~~~~v~~g~~v~l~C~~~~~~-~~-~v~W~~~~--~~~~---------~~~~~~~~~~~~~~~~~~~l~i~~~ 69 (291)
+.+.. |....+.+|++++|.|.+.+.+ .+ .+.|++++ ..+. ...+ ..+.........++|.|.++
T Consensus 21 ~~v~~-p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~-~~r~~~~~~~~~~~L~I~~v 98 (234)
T 2j6e_L 21 SVLTQ-PPSASGTPGQRVTISCSGSSSNIGSNYVYWYQQLPGTAPKLLIYRNNQRPSGV-PDRFSGSKSGTSASLAISGL 98 (234)
T ss_dssp CCCBC-CSCCCBCTTCEEEEEEECCTTTTTTSCCEEEEECSSSCCEEEEBTTTBCCSSS-CTTEEEEEETTEEEEEEESC
T ss_pred cEEeC-CCcEEeeCCCcEEEEEEecCCCCCCCeEEEEEecCCCCcEEEEECccccCCCc-cccEEEEecCCeEEEEECCC
Confidence 34455 7778899999999999998743 34 69999863 2210 0000 01111111234468999999
Q ss_pred CCCCCeEEEEEEeCCCC---ceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCC-ceeEEeECC
Q psy14540 70 RVEDSGIYQCTATNRVG---SQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPP-LTISWLKNG 145 (291)
Q Consensus 70 ~~~d~G~y~C~~~~~~~---~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~-~~~~W~~~~ 145 (291)
+.+|+|.|+|.+.+..+ .....+.+.|...+..++... . ..+. ....+|+.++|.|.+.+..|. +.+.|+++|
T Consensus 99 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~-~-~~~~-~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g 175 (234)
T 2j6e_L 99 RSEDEADYYCATWDDSLSAVIFGGGTKLTVLGQPKAAPSVT-L-FPPS-SEELQANKATLVCLISDFFPGAVTVAWKADG 175 (234)
T ss_dssp CSTTCSEEEEEEEETTTTEEEECCCBCCCBCCCCCCCCCCC-E-ECCC-HHHHTTSCCCEEECCCBCSSCCCEEEEEETT
T ss_pred CHHHCEEEEEEEEcCCcceeEecCCEEEEEecCCCCCCccc-c-cCCC-hhHhcCCceEEEEEEEEEcCCceEEEEEECC
Confidence 99999999999997766 223345566643321111111 1 1111 223468899999999544554 489999999
Q ss_pred EeccCC
Q psy14540 146 LPILSD 151 (291)
Q Consensus 146 ~~~~~~ 151 (291)
..+...
T Consensus 176 ~~l~~~ 181 (234)
T 2j6e_L 176 APVKAG 181 (234)
T ss_dssp EECCSS
T ss_pred EECCCC
Confidence 987543
No 151
>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D
Probab=99.88 E-value=1e-21 Score=147.36 Aligned_cols=195 Identities=17% Similarity=0.253 Sum_probs=123.6
Q ss_pred CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEEC--Cee------------cCC-----CeeEeceEEeeccceEE
Q psy14540 2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLD--GYP------------LAG-----DRFVMGQYMSLHGDVIS 62 (291)
Q Consensus 2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~--~~~------------~~~-----~~~~~~~~~~~~~~~~~ 62 (291)
.+.++..|..+.+.+|++++|.| ..+.+.+.+.|+|. +.. ... .++.. .......+
T Consensus 2 ~~~v~~~p~~v~v~~G~~v~L~C-~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~----~~~~~~~~ 76 (245)
T 4ei6_B 2 GPKVLQIPSHQIIDMGQMVTLNC-DPVSNHLYFYWYKQILGQQMEFLVNFYNGKVMEKSKLFKDQFSV----ERPDGSYF 76 (245)
T ss_dssp CCCCEEECSEEEEETTCCEEEEE-ECCTTCCEEEEEEEETTTEEEEEEEEETTEEEEECTTCCTTEEE----ECCTTSCE
T ss_pred CcceEeCCceEEecCCCCEEEEE-EcCCCCCEEEEEEECCCCCcEEEEEECCCceeccCCCccCCEEE----EeccCceE
Confidence 36778888889999999999999 55677889999981 111 110 12211 11123457
Q ss_pred EEEEeecCCCCCeEEEEEEeCC----CCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCc-
Q psy14540 63 HVNISSVRVEDSGIYQCTATNR----VGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPL- 137 (291)
Q Consensus 63 ~l~i~~~~~~d~G~y~C~~~~~----~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~- 137 (291)
+|.|.+++.+|+|.|.|.+.+. .........+.|................+....+.+|+.++|.|.+.+..|.+
T Consensus 77 sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~~p~~~ 156 (245)
T 4ei6_B 77 TLKIQPTALEDSAVYFCASSFWGAYAEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHV 156 (245)
T ss_dssp EEEECSCCGGGCEEEEEEEECSSTTCCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCE
T ss_pred EEEECCCCHhHCEEEEEEEccCCCcceEEEcCCcEEEEecccCCCCCceEEEeCCCcccccCCCceEEEEEEeeEeCCCe
Confidence 8999999999999999999842 22334455677764211101111222233334456799999999985446655
Q ss_pred eeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCC-Ce
Q psy14540 138 TISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGH-SG 216 (291)
Q Consensus 138 ~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~-~g 216 (291)
.+.|+++|..+....... ...+.....++.|.|.+ .+.|.|.....+| +|
T Consensus 157 ~v~W~~~g~~l~~~~~~~---------~~~~~~~~~~~~g~~~~--------------------~s~L~i~~~~~~d~~g 207 (245)
T 4ei6_B 157 ELSWWVNGKEVHSGVCTD---------PQPLKEQPALNDSRYAL--------------------SSRLRVSATFWQNPRN 207 (245)
T ss_dssp EEEEEETTEEECTTEEEC---------SSCEESSTTSTTCCEEE--------------------EEEEEEEHHHHSCTTC
T ss_pred EEEEEECCEECCCCcccc---------cccccccccCCCCCEEE--------------------EEEEEEcHHHhccCCC
Confidence 899999998886432110 00111222334566655 2457788887777 99
Q ss_pred eEEEEeeeCCccCC
Q psy14540 217 NYTCVASNTVASDN 230 (291)
Q Consensus 217 ~y~C~~~~~~~~~~ 230 (291)
.|+|.|.|......
T Consensus 208 ~ytC~v~~~~l~~~ 221 (245)
T 4ei6_B 208 HFRCQVQFYGLSEN 221 (245)
T ss_dssp EEEEEEEECCBCTT
T ss_pred eEEEEEEECCCCCc
Confidence 99999998764433
No 152
>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A
Probab=99.88 E-value=1.2e-21 Score=146.56 Aligned_cols=189 Identities=18% Similarity=0.269 Sum_probs=119.1
Q ss_pred CcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECC--eec------------C----CCeeEeceEEeeccceEEEE
Q psy14540 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDG--YPL------------A----GDRFVMGQYMSLHGDVISHV 64 (291)
Q Consensus 3 p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~--~~~------------~----~~~~~~~~~~~~~~~~~~~l 64 (291)
+.+...|..+.+.+|++++|.|.+.+ +.+.+.|+|.. ... . ..++.. .......++|
T Consensus 3 ~~v~~~p~~v~v~~G~~v~L~C~~~~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~----~~~~~~~~sL 77 (240)
T 3q5y_A 3 SGVVQSPRHIIKEKGGRSVLTCIPIS-GHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSV----QQFDDYHSEM 77 (240)
T ss_dssp CCCEEECSEEEEETTCCEEEEEECCT-TCCEEEEEEECTTSCCEEEEEEETTEEEEECSCCTTEEE----EECTTSCEEE
T ss_pred cccccCcceeeecCCCcEEEEEEeCC-CCceEEEEEECCCCCCEEEEEEcCCccccCcccCCeEEE----EeCCCCEEEE
Confidence 56777888899999999999999875 67789999821 110 0 011111 1113345789
Q ss_pred EEeecCCCCCeEEEEEEeCC---CCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCc-eeE
Q psy14540 65 NISSVRVEDSGIYQCTATNR---VGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPL-TIS 140 (291)
Q Consensus 65 ~i~~~~~~d~G~y~C~~~~~---~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~~ 140 (291)
.|.+++.+|+|.|.|.+.+. .........+.|......+.........+....+.+|+.++|.|.+...+|.+ .+.
T Consensus 78 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~ 157 (240)
T 3q5y_A 78 NMSALELEDSAMYFCASSLRWGDEQYFGPGTRLTVLEDLRNVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELS 157 (240)
T ss_dssp EECSCCGGGCEEEEEEEESSTTBCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEE
T ss_pred EECcCChhHCEEEEEEEccCCCcceEEcCCEEEEEeccccCCCCCeeEEeCCchhhcccCCceEEEEEEeeEECCCeEEE
Confidence 99999999999999999732 22234455677764211111111222233334556789999999995446766 899
Q ss_pred EeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCC-CeeEE
Q psy14540 141 WLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGH-SGNYT 219 (291)
Q Consensus 141 W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~-~g~y~ 219 (291)
|+++|..+....... ..+.....|.|.+ .+.|.|.....+| +|.|+
T Consensus 158 W~~~g~~l~~~~~~~-------------~~~~~~~~g~~~~--------------------~s~L~i~~~~~~d~~g~Yt 204 (240)
T 3q5y_A 158 WWVNGKEVHSGVSTD-------------PQAYKESNYSYSL--------------------SSRLRVSATFWHNPRNHFR 204 (240)
T ss_dssp EEETTEEECTTEEEC-------------SSCEEEETTEEEE--------------------EEEEEEEHHHHSCTTCEEE
T ss_pred EEECCEECcCcEecC-------------CceeeCCCCCEEE--------------------EEEEEECHHHhccCCCEEE
Confidence 999999875432110 0001112344544 2457788887777 77899
Q ss_pred EEeeeCCccC
Q psy14540 220 CVASNTVASD 229 (291)
Q Consensus 220 C~~~~~~~~~ 229 (291)
|.|.|.....
T Consensus 205 C~v~~~~~~~ 214 (240)
T 3q5y_A 205 CQVQFHGLSE 214 (240)
T ss_dssp EEEEECCBCT
T ss_pred EEEEcCCCCC
Confidence 9998876443
No 153
>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}
Probab=99.88 E-value=8.7e-22 Score=149.71 Aligned_cols=193 Identities=16% Similarity=0.228 Sum_probs=123.3
Q ss_pred CcceeecceeeeecCCcEEEEEEecCCCCCeeEEEE--CCeecC------------C-----CeeEeceEEeeccceEEE
Q psy14540 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKL--DGYPLA------------G-----DRFVMGQYMSLHGDVISH 63 (291)
Q Consensus 3 p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~--~~~~~~------------~-----~~~~~~~~~~~~~~~~~~ 63 (291)
+.++..|....+.+|++++|.|.+. .+.+.+.|+| .+.... . +++.. .......++
T Consensus 27 ~~v~~~p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~----~~~~~~~~s 101 (268)
T 3pl6_D 27 AGVSQTPSNKVTEKGKYVELRCDPI-SGHTALYWYRQSLGQGPEFLIYFQGTGAADDSGLPNDRFFA----VRPEGSVST 101 (268)
T ss_dssp SSCBCCCSEEEEETTCCEEEEEBCB-TTCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEE----ECTTSSSEE
T ss_pred ceeEeCCCEEEecCCCCEEEEEEeC-CCCceEEEEEECCCCCcEEEEEECCCCccccCCCccCcEEE----EecCCCEEE
Confidence 4566777888999999999999986 5678899998 222111 0 11111 111234578
Q ss_pred EEEeecCCCCCeEEEEEEeCC--CCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCc-eeE
Q psy14540 64 VNISSVRVEDSGIYQCTATNR--VGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPL-TIS 140 (291)
Q Consensus 64 l~i~~~~~~d~G~y~C~~~~~--~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~~ 140 (291)
|.|.+++.+|+|.|+|.+.+. .........+.|................+....+.+|+.++|.|.+....|.+ .+.
T Consensus 102 L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~ 181 (268)
T 3pl6_D 102 LKIQRTERGDSAVYLCATSALGDTQYFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELS 181 (268)
T ss_dssp EEECSCCGGGCEEEEEEEESSSSSCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEE
T ss_pred EEECCCCcccCEEEEEEEecCCCceeeCCcEEEEEecCcccccCCceEEeCCCcccccCCCceEEEEEECcccCCCeEEE
Confidence 999999999999999999863 33344455677765221111111122233334556799999999995445544 899
Q ss_pred EeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCC-CeeEE
Q psy14540 141 WLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGH-SGNYT 219 (291)
Q Consensus 141 W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~-~g~y~ 219 (291)
|+++|..+....... .........++.|.|.+ .+.|.|.....+| +|.|+
T Consensus 182 W~~~g~~l~~~~~~~---------~~~~~~~~~~~~~~~~~--------------------~s~l~i~~~~~~d~~g~Yt 232 (268)
T 3pl6_D 182 WWVNGKEVHSGVCTD---------PQPLKEQPALNDSRYSL--------------------SSRLRVSATFWQNPRNHFR 232 (268)
T ss_dssp EEESSSEECTTEEEC---------SSCEESSTTCTTCCEEE--------------------EEEEEEEHHHHSCTTCEEE
T ss_pred EEECCEECCCCeEec---------cccccccccCCCCcEEE--------------------EEEEEEcHHHhccCCCEEE
Confidence 999998875431100 01112233445666765 2457777777777 99999
Q ss_pred EEeeeCCccC
Q psy14540 220 CVASNTVASD 229 (291)
Q Consensus 220 C~~~~~~~~~ 229 (291)
|.|.|.....
T Consensus 233 C~v~~~~l~~ 242 (268)
T 3pl6_D 233 CQVQFYGLSE 242 (268)
T ss_dssp EEEEECCBCT
T ss_pred EEEEcCCCCC
Confidence 9999887443
No 154
>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}
Probab=99.88 E-value=1.8e-22 Score=150.35 Aligned_cols=184 Identities=16% Similarity=0.255 Sum_probs=97.4
Q ss_pred CcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECC--eecC-------------CCeeEeceEEeeccceEEEEEEe
Q psy14540 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDG--YPLA-------------GDRFVMGQYMSLHGDVISHVNIS 67 (291)
Q Consensus 3 p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~--~~~~-------------~~~~~~~~~~~~~~~~~~~l~i~ 67 (291)
+.+...|....+.+|++++|.|.+.+.+.+.+.|++++ ..+. ..++.. ......++|.|.
T Consensus 24 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~-----~~~~~~~~L~I~ 98 (233)
T 3bqu_C 24 TTVTQSPASLSMSIGEKVTIRCITSTDIDDDMNWYQQKPGEPPRLLISDGNTLRPGVPSRFSS-----SGYGTDFVFTIE 98 (233)
T ss_dssp CCEEEECSBC-------CCEEEEEEEEESSCEEEEEECTTSCCEEEECTTSCBCTTSCTTCCC-----CEEEEEEEEC--
T ss_pred eeEEEcCCeEEEecCCCEEEEEecCCcCCCeEEEEEECCCCCcEEEEEcCCccCCCCCccEEe-----eccCCEEEEEEC
Confidence 45566688888999999999999988666789999853 2110 111111 112344679999
Q ss_pred ecCCCCCeEEEEEEeCCCCc-eeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCc-eeEEeECC
Q psy14540 68 SVRVEDSGIYQCTATNRVGS-QTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPL-TISWLKNG 145 (291)
Q Consensus 68 ~~~~~d~G~y~C~~~~~~~~-~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~~~ 145 (291)
+++.+|+|.|.|.+.+..+. ......+.|...+..| ......+. ....+|+.++|.|.+.+..|.+ .+.|+++|
T Consensus 99 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p---~v~~~~~~-~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g 174 (233)
T 3bqu_C 99 NMLSEDVADYYCLQSDNLPYTFGGGTNLEIKRADAAP---TVSIFPPS-SEQLTSGGASVVCFLNNFYPKDINVKWKIDG 174 (233)
T ss_dssp ---CCCCSEEEEEECSSSSCCBCCCCBC---CCCBCC---EEEEECCC-HHHHHTTEEEEEEEEEEEBSSCEEEEEEEC-
T ss_pred CCCHHHCEEEEEEEecCCceeecCCEEEEEeCCCCCC---EEEEeCCC-HHhhcCCceEEEEEEccccCCceEEEEEECC
Confidence 99999999999999876543 2233456665433222 11111111 2233699999999995445554 79999999
Q ss_pred EeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeC
Q psy14540 146 LPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNT 225 (291)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~ 225 (291)
..+..... .......+..|.|.. .+.|.|..+..+|+|.|+|.|.|.
T Consensus 175 ~~~~~~~~-------------~~~~~~~~~~~~~~~--------------------~s~L~i~~~~~~d~g~Y~C~a~n~ 221 (233)
T 3bqu_C 175 SERQNGVL-------------NSWTDQDSKDSTYSM--------------------SSTLTLTKDEYERHNSYTCEATHK 221 (233)
T ss_dssp ----CCEE-------------EEECCCCTTTCCEEE--------------------EEEEEEEHHHHHTCCCEEEEEEEC
T ss_pred eeCCCCce-------------EecCCccCCCCCEEE--------------------EEEEEECHHHhCCCCCEEEEEEeC
Confidence 87653311 111122223344543 245777777788888888888887
Q ss_pred Ccc
Q psy14540 226 VAS 228 (291)
Q Consensus 226 ~~~ 228 (291)
...
T Consensus 222 ~~~ 224 (233)
T 3bqu_C 222 TST 224 (233)
T ss_dssp ---
T ss_pred CCC
Confidence 643
No 155
>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L
Probab=99.88 E-value=3.5e-21 Score=146.92 Aligned_cols=143 Identities=16% Similarity=0.241 Sum_probs=91.5
Q ss_pred CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCe-----ecC--CCee---EeceEEeeccceEEEEEEeecCC
Q psy14540 2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGY-----PLA--GDRF---VMGQYMSLHGDVISHVNISSVRV 71 (291)
Q Consensus 2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~-----~~~--~~~~---~~~~~~~~~~~~~~~l~i~~~~~ 71 (291)
.+.|...|..+.+.+|++++|.|.+.+.+.+.+.|++++. .+. .... ...+.........++|.|.+++.
T Consensus 12 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~p~~~i~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~ 91 (276)
T 3auv_A 12 DIQMTQSPSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQP 91 (276)
T ss_dssp CCCEEEECSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred ceeEEeCCCeEEEcCCCCEEEEeEcCCCCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCCEEEeccCCeEEEEEccCCh
Confidence 3567778888899999999999999988888999998542 110 0000 00011111223446799999999
Q ss_pred CCCeEEEEEEeCCCCc-eeeeeeEEEEcCCCCC-------cccceeccCCcceeecCCCceEEEEEeeCCCC--CceeEE
Q psy14540 72 EDSGIYQCTATNRVGS-QTHSADMRVYDAPGQP-------QDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDP--PLTISW 141 (291)
Q Consensus 72 ~d~G~y~C~~~~~~~~-~~~~~~l~v~~~~~~~-------~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p--~~~~~W 141 (291)
+|+|.|.|.+.+..+. ......|.|...+... .........+....+.+|+.++|.|.+. +.+ .+.+.|
T Consensus 92 ~DsG~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~p~~~~~~p~~~~v~~G~~v~L~C~~~-g~~~~~~~v~W 170 (276)
T 3auv_A 92 EDFATYYCQQHYTTPPTFGCGTKVEIKGGGGGSIEGRSGGGGSEVQLVESGGGLVQPGGSLRLSCAAS-GFTISDYWIHW 170 (276)
T ss_dssp GGCEEEEEEECSSSSCCCCCCEEEEC-----------------CCEEEEECCEEECTTCCEEEEEEEE-SSCGGGSEEEE
T ss_pred hhCEEEEEEEecCCcccccCCEEEEEecCCCccccccccccCcceEEECCCceEecCCCeEEEEEEec-CccCCCCEEEE
Confidence 9999999999876443 3334566666543100 0001111223457788999999999994 544 589999
Q ss_pred eECC
Q psy14540 142 LKNG 145 (291)
Q Consensus 142 ~~~~ 145 (291)
++++
T Consensus 171 ~k~~ 174 (276)
T 3auv_A 171 VRQA 174 (276)
T ss_dssp EEEC
T ss_pred EEcC
Confidence 9964
No 156
>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}
Probab=99.87 E-value=7.9e-22 Score=142.28 Aligned_cols=164 Identities=18% Similarity=0.297 Sum_probs=107.5
Q ss_pred eecceeeeecCCcEEEEEEecC-CCCCeeEEEECCeecC---CCe-----eEe-c----eEEeeccceEEEEEEeecCCC
Q psy14540 7 YKFIQQTLQPGPPVSLKCIATG-NPTPHISWKLDGYPLA---GDR-----FVM-G----QYMSLHGDVISHVNISSVRVE 72 (291)
Q Consensus 7 ~~~~~~~v~~g~~v~l~C~~~~-~~~~~v~W~~~~~~~~---~~~-----~~~-~----~~~~~~~~~~~~l~i~~~~~~ 72 (291)
..|..+.+.+|++++|.|.+.+ .+.+.|.|++++..+. ... ... . .+..... ..+|+|.+++.+
T Consensus 3 ~~p~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~R~~~~~--~~sL~I~~v~~~ 80 (193)
T 2if7_A 3 LTPLMVNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQ--SYSLQLSNLKME 80 (193)
T ss_dssp CCCEEEEEETTSCEEECCCCCCCSCCCEEEEEETTEEEEEEECCSSSCCEEEECCHHHHTTEEECT--TCCEEECSCCGG
T ss_pred CCCeEEEEEecCeEEEeccCCCcccccEEEEEECCEEEEEEecccCCCCceeecCccccccEEECC--CeEEEECCCCcc
Confidence 3466788999999999999875 4556899999876442 100 000 0 0001111 256999999999
Q ss_pred CCeEEEEEEeCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCC-ceEEEEEeeCCCCCceeEEeECCEeccCC
Q psy14540 73 DSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGD-RAGVQCLVTKGDPPLTISWLKNGLPILSD 151 (291)
Q Consensus 73 d~G~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~l~C~~~~~~p~~~~~W~~~~~~~~~~ 151 (291)
|+|.|+|.+.+..+.....+.|.|...+..| ...... .....|. .++|.|.+..+.|.+.+.|+++|..+...
T Consensus 81 D~G~Y~C~~~~~~~~~~~~~~L~V~~~~~~p----~i~~~~--~~~~~g~~~v~L~C~~~g~~p~p~i~W~~~g~~l~~~ 154 (193)
T 2if7_A 81 DTGSYRAQISTKTSAKLSSYTLRILRQLRNI----QVTNHS--QLFQNMTCELHLTCSVEDADDNVSFRWEALGNTLSSQ 154 (193)
T ss_dssp GCEEEEEEEECSSCEEEEEEEEEEECCCEEE----EEEECC--C---CSSEEEEEEEEEESCCTTCEEEEEETTEEEESS
T ss_pred cCceEEEEEEecCCCeEEEEEEEEEccCCCC----eEecCc--eeecCCCceEEEEEEEecCCCceEEEEEeCCEEcCCC
Confidence 9999999999877766667788887654222 111111 1233455 89999999544668999999998765322
Q ss_pred CceEEeccCCceEEEEEeeCCCC-CceeEEEEEEecCCCC
Q psy14540 152 AEITIRSSGEYTSSLSIATLSTG-HSGNYTCVASNTVASD 190 (291)
Q Consensus 152 ~~~~~~~~~~~~~~l~i~~~~~~-d~g~y~C~~~~~~~~~ 190 (291)
..|.+.....+ |.|.|+|.|.|..+..
T Consensus 155 ------------~~l~i~~~~~~~d~G~Y~C~a~N~~g~~ 182 (193)
T 2if7_A 155 ------------PNLTVSWDPRISSEQDYTCIAENAVSNL 182 (193)
T ss_dssp ------------SEEEEEECTTTCSCCEEEEEEEETTEEE
T ss_pred ------------CeEEEEeccCcCCCCcEEEEEECCCCcc
Confidence 23555443443 7888888888877654
No 157
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A
Probab=99.87 E-value=5.4e-22 Score=155.54 Aligned_cols=177 Identities=16% Similarity=0.262 Sum_probs=122.1
Q ss_pred ecceeeeecC---CcEEEEEE-ecCCCCCeeEEEECCeecCCCeeEeceEEeecc--ceEEEEEEeecCCCCCeEEEEEE
Q psy14540 8 KFIQQTLQPG---PPVSLKCI-ATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHG--DVISHVNISSVRVEDSGIYQCTA 81 (291)
Q Consensus 8 ~~~~~~v~~g---~~v~l~C~-~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~ 81 (291)
.+....+.+| +.+.|.|. ..+.|.+.+.|++++....... ......+ ...+.|.|.+++..|+|.|+|.+
T Consensus 138 ~~~~~~~~~g~~~~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~----~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a 213 (331)
T 3u83_A 138 TQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQ----EIRNPNGTVTVISRYRLVPSREAHQQSLACIV 213 (331)
T ss_dssp CSSCEEECTTCCCCEEEEEEEEEEEBSCCEEEEEESSCCEEEEE----EEECTTSCEEEEEEEEECCCGGGTTCEEEEEE
T ss_pred CCCceeecCCCccceEEEEEEecCCcCCceEEEEcCCCCccccc----eeECCCCcEEEEEEEEEEeccccCCCEEEEEE
Confidence 3455667888 77999998 6678889999999633211000 0000111 12356889999999999999999
Q ss_pred eCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCce-eEEeECCEeccCCCceEEeccC
Q psy14540 82 TNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLT-ISWLKNGLPILSDAEITIRSSG 160 (291)
Q Consensus 82 ~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~-~~W~~~~~~~~~~~~~~~~~~~ 160 (291)
.+..+.....+.|.|...|. ..........+.+|+.+.|.|.+ .+.|.+. +.|++++..+......
T Consensus 214 ~n~~~~~~~~~~l~V~~~P~------~~~~~~~~~~~~~g~~~~l~C~~-~g~p~p~~i~W~~~~~~~~~~~~~------ 280 (331)
T 3u83_A 214 NYHMDRFKESLTLNVQYEPE------VTIEGFDGNWYLQRMDVKLTCKA-DANPPATEYHWTTLNGSLPKGVEA------ 280 (331)
T ss_dssp EETTEEEEEEEECCEEEEEE------EEEECCCSCCBTTCCCEEEEEEE-EEESCCCEEEEEETTBSCCTTEEE------
T ss_pred ecCCCcceeeEEEEEecCCe------EEEecCCCceEeCCCeEEEEEeC-cCCCCCCEEEEEECCCccccccee------
Confidence 98888777777787765441 12223344567889999999999 6888887 9999998876433110
Q ss_pred CceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEe-eeecCCCeeEEEEeeeCCccCCceeEEEEec
Q psy14540 161 EYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIA-TLSTGHSGNYTCVASNTVASDNHSSNLRVNV 239 (291)
Q Consensus 161 ~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~-~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~ 239 (291)
....|.|. ++..+|+|.|+|.|.|..|.....+.|.|..
T Consensus 281 ----------------------------------------~~~~L~i~~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 320 (331)
T 3u83_A 281 ----------------------------------------QNRTLFFKGPINYSLAGTYICEATNPIGTRSGQVEVNITE 320 (331)
T ss_dssp ----------------------------------------ETTEEEECSCCCGGGCEEEEEEEEETTEEEEEEEEECCBC
T ss_pred ----------------------------------------cCcEEEEeCCCccccCeEEEEEEEeccccceEEEEEEEec
Confidence 02356677 6777778888888888877777777777765
Q ss_pred CC
Q psy14540 240 PP 241 (291)
Q Consensus 240 ~p 241 (291)
.+
T Consensus 321 ~~ 322 (331)
T 3u83_A 321 AA 322 (331)
T ss_dssp --
T ss_pred cc
Confidence 44
No 158
>3nfj_J T cell receptor beta chain; immunoglobulin family, immune system; 2.68A {Homo sapiens} PDB: 3hg1_E
Probab=99.87 E-value=1e-21 Score=147.34 Aligned_cols=194 Identities=19% Similarity=0.265 Sum_probs=121.5
Q ss_pred cceeecceeeeecCCcEEEEEEecCCCCCeeEEEEC--CeecC---------------CCeeEeceEEeeccceEEEEEE
Q psy14540 4 QLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLD--GYPLA---------------GDRFVMGQYMSLHGDVISHVNI 66 (291)
Q Consensus 4 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~--~~~~~---------------~~~~~~~~~~~~~~~~~~~l~i 66 (291)
.+...|..+.+.+|++++|.|.+.+.+.+.+.|+|. +.... ..++.. .......++|.|
T Consensus 3 ~v~~~p~~v~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~R~~~----~~~~~~~~sL~I 78 (245)
T 3nfj_J 3 TIHQWPATLVQPVGSPLSLECTVEGTSNPNLYWYRQAAGRGLQLLFYSVGIGQISSEVPQNLSA----SRPQDRQFILSS 78 (245)
T ss_dssp EEEEECSEEEEETTCCEEEEEEEESCSSCEEEEEEESTTSCEEEEEEESSTTCCBCSSCCSSEE----EEEETTEEEEEE
T ss_pred eeeCCCceEEecCCCCEEEEEEecCCCCceEEEEEECCCCCcEEEEEECCCcccCCccCCcEEE----EecCCCEEEEEE
Confidence 456778888999999999999999888889999982 21110 111111 111234578999
Q ss_pred eecCCCCCeEEEEEEeCCCC------ceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCc-ee
Q psy14540 67 SSVRVEDSGIYQCTATNRVG------SQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPL-TI 139 (291)
Q Consensus 67 ~~~~~~d~G~y~C~~~~~~~------~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~ 139 (291)
.+++.+|+|.|.|.+.+..+ .....+.|.|................+....+.+|+.++|.|.+...+|.+ .+
T Consensus 79 ~~v~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v 158 (245)
T 3nfj_J 79 KKLLLSDSGFYLCAWSVSVGAGVPTIYFGEGSWLTVVEDLNKVFPPEVAVFEPSEAEISHTQKATLVCLATGFFPDHVEL 158 (245)
T ss_dssp SSCCGGGCEEEEEEEECCTTTSSCCCEECCCEEEEEESCGGGCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEE
T ss_pred CCCChhhCEEEEEEEeeccCCCceeEEECCCeEEEEEcccCCCCCCceEeecCCcccccCCCceEEEEEEccCcCCCEEE
Confidence 99999999999999987222 233445677765211000111111222333455699999999995445544 89
Q ss_pred EEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCC-CeeE
Q psy14540 140 SWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGH-SGNY 218 (291)
Q Consensus 140 ~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~-~g~y 218 (291)
.|+++|..+....... ...+.....+..|.|.. ...|.|.....+| +|.|
T Consensus 159 ~W~k~g~~l~~~~~~~---------~~~~~~~~~~~~~~~~~--------------------~s~L~i~~~~~~d~g~~Y 209 (245)
T 3nfj_J 159 SWWVNGKEVHSGVCTD---------PQPLKEQPALNDSRYAL--------------------SSRLRVSATFWQNPRNHF 209 (245)
T ss_dssp EEEETTEEECTTEEEC---------SSCEESSSSSTTCCEEE--------------------EEEEEEEHHHHTCTTCEE
T ss_pred EEEECCEECCCCcccc---------cccccccccCCCCCEEE--------------------EEEEEECHHHhccCCCeE
Confidence 9999999885432110 00111122224456654 2467778777777 7799
Q ss_pred EEEeeeCCccCC
Q psy14540 219 TCVASNTVASDN 230 (291)
Q Consensus 219 ~C~~~~~~~~~~ 230 (291)
+|.|.|......
T Consensus 210 tC~v~~~~~~~~ 221 (245)
T 3nfj_J 210 RCQVQFYGLSEN 221 (245)
T ss_dssp EEEEEECCBCSS
T ss_pred EEEEEECCCCCc
Confidence 999998875444
No 159
>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1
Probab=99.87 E-value=6.6e-21 Score=142.50 Aligned_cols=140 Identities=14% Similarity=0.185 Sum_probs=93.8
Q ss_pred CcceeecceeeeecCCcEEEEEEecCCC----CCeeEEEECC--eecC----C-CeeE---eceEEeeccceEEEEEEee
Q psy14540 3 PQLIYKFIQQTLQPGPPVSLKCIATGNP----TPHISWKLDG--YPLA----G-DRFV---MGQYMSLHGDVISHVNISS 68 (291)
Q Consensus 3 p~~~~~~~~~~v~~g~~v~l~C~~~~~~----~~~v~W~~~~--~~~~----~-~~~~---~~~~~~~~~~~~~~l~i~~ 68 (291)
..|...|....+.+|++++|.|.+.+.+ .+.+.|+|+. ..+. . .... ..+.........++|.|.+
T Consensus 2 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~ 81 (240)
T 1moe_A 2 IVLTQSPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDP 81 (240)
T ss_dssp CCEEEECSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESS
T ss_pred CceEeeCCeEEecCCCCEEEEEeCCCccccCCCceEEEEEECCCCCceEEEEEecccCcCCCccEEEEecCCeEEEEEcC
Confidence 3567788889999999999999999876 7789999952 2110 0 0000 0011111123456799999
Q ss_pred cCCCCCeEEEEEEeCCCCc-eeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCC--CceeEEeEC
Q psy14540 69 VRVEDSGIYQCTATNRVGS-QTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDP--PLTISWLKN 144 (291)
Q Consensus 69 ~~~~d~G~y~C~~~~~~~~-~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p--~~~~~W~~~ 144 (291)
++.+|+|.|+|.+.+..+. ......|.|...+....... ....+....+.+|+.++|.|.+ .+.| .+.+.|+++
T Consensus 82 v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~-~~~~~~~~~v~~G~~v~L~C~~-~g~p~~~~~v~W~k~ 158 (240)
T 1moe_A 82 VEADDVATYYCQQTNEDPYTFGGGTKLEIKGGGSGGGGEV-QLQQSGAELVEPGASVKLSCTA-SGFNIKDTYMHWVKQ 158 (240)
T ss_dssp CCGGGCEEEEEEECSSSSCCBCCCEEEEECCCSCCCCCCC-EEEECCCEEECTTCCEEEEEEE-ESSCGGGSCEEEEEE
T ss_pred CChhhCEEEEEEEccCCceeecCCEEEEEecCCCCCCceE-EEeCCCceEEeCCCcEEEEEEE-cCccCCCCEEEEEEE
Confidence 9999999999999876543 34456777766542111111 1122445678899999999999 4655 469999996
No 160
>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A
Probab=99.87 E-value=2.4e-21 Score=142.30 Aligned_cols=165 Identities=22% Similarity=0.286 Sum_probs=103.0
Q ss_pred eeecceeeeecCCcEEEEEEecCC-------CCCeeEEEECCeecC------------------CCeeEeceEEeeccce
Q psy14540 6 IYKFIQQTLQPGPPVSLKCIATGN-------PTPHISWKLDGYPLA------------------GDRFVMGQYMSLHGDV 60 (291)
Q Consensus 6 ~~~~~~~~v~~g~~v~l~C~~~~~-------~~~~v~W~~~~~~~~------------------~~~~~~~~~~~~~~~~ 60 (291)
+..|..+.+.+|++++|.|.+... +.+.+.|+|++.... ..++.... .....
T Consensus 4 ~~~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~---~~~~~ 80 (214)
T 2zg1_A 4 LQVQKSVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLG---DVQKK 80 (214)
T ss_dssp EECCSEEEEETTCCEEECCEEECCCCCCSCCCCEEEEEEETTCCGGGCCBSEESCTTSCBCTTTTTTEEECS---CGGGT
T ss_pred eeCCcEEEEecCccEEEeeeeecCCcccCCCCceEEEEEecCCCCcccceEecCCcccccCccccCceEEec---cCCCC
Confidence 345777899999999999998753 467899999765210 01111100 01123
Q ss_pred EEEEEEeecCCCCCeEEEEEEeCCCCce----eeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCC---
Q psy14540 61 ISHVNISSVRVEDSGIYQCTATNRVGSQ----THSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKG--- 133 (291)
Q Consensus 61 ~~~l~i~~~~~~d~G~y~C~~~~~~~~~----~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~--- 133 (291)
.++|.|.+++.+|+|.|.|.+.+..+.. ...+.|.|...+..|... . + ..+.+|+.++|.|.+...
T Consensus 81 ~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~p~i~----~-~--~~~~~G~~v~L~C~~~~~~~~ 153 (214)
T 2zg1_A 81 NCSLSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIH----F-L--EPLESGRPTRLSCSLPGSCEA 153 (214)
T ss_dssp BCCEEECSCCGGGCEEEEEEEEETTTEEEECCSSCEEEEEECCCCCCEEC---------CCCCTTCCEEEEEECTTCCSC
T ss_pred eEEEEEccCCHhhCceEEEEEEcCCCceeeecCCceEEEEecCCCCCcee----c-C--ccccCCCeEEEEEEeccCCCC
Confidence 4579999999999999999998765321 246778888765433211 1 1 126689999999998432
Q ss_pred CCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecC
Q psy14540 134 DPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTV 187 (291)
Q Consensus 134 ~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 187 (291)
.|.+.+.|++++....... ......|.|..+..+|.|.|+|.|.|..
T Consensus 154 ~p~p~v~W~~~~~~~~~~~-------~~~~~~L~i~~~~~~~~g~Y~C~a~n~~ 200 (214)
T 2zg1_A 154 GPPLTFSWTGNALSPLDPE-------TTRSSELTLTPRPEDHGTNLTCQMKRQG 200 (214)
T ss_dssp SSCCEEEEESSTTSSSCSS-------CCCSSEEEECCCTTCCSCEEEEEEECC-
T ss_pred CCCceEEEeCCCCccCCCC-------ceeEEEEEEecccHHcCcEEEEEEEeCC
Confidence 4789999999885432110 0112345555555555555555555543
No 161
>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A
Probab=99.87 E-value=2.7e-21 Score=144.43 Aligned_cols=136 Identities=15% Similarity=0.238 Sum_probs=90.4
Q ss_pred cceeecceeeeecCCcEEEEEEecCCCCCeeEEEEC--CeecC----------------CCeeEeceEEeeccceEEEEE
Q psy14540 4 QLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLD--GYPLA----------------GDRFVMGQYMSLHGDVISHVN 65 (291)
Q Consensus 4 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~--~~~~~----------------~~~~~~~~~~~~~~~~~~~l~ 65 (291)
.|...|..+.+.+|++++|.|. .+.+.+.+.|+|+ +.... ..++.. .......++|+
T Consensus 2 ~v~q~p~~~~v~~G~~v~L~C~-~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~----~~~~~~~~~L~ 76 (238)
T 2p1y_A 2 AVTQSPRNKVAVTGGKVTLSCN-QTNNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKA----SRPSQENFSLI 76 (238)
T ss_dssp CEEEECSEEEEETTCCEEEEEE-ECSCCSEEEEEEEETTTEEEEEEEESSTTCCEECSSCTTCEE----ECCSSSBCEEE
T ss_pred cceECccceEEeCCCEEEEEee-cCCCCccEEEEEECCCCCcEEEEEEecCcceeCCCccceEEE----EccCCceEEEE
Confidence 5677888899999999999999 5677889999995 21110 111111 11123346799
Q ss_pred EeecCCCCCeEEEEEEeCCCCc-----eeeeeeEEEEcCCCCCcc-----cceeccCCcceeecCCCceEEEEEeeCCCC
Q psy14540 66 ISSVRVEDSGIYQCTATNRVGS-----QTHSADMRVYDAPGQPQD-----VKLVTSNSRSIKVHSGDRAGVQCLVTKGDP 135 (291)
Q Consensus 66 i~~~~~~d~G~y~C~~~~~~~~-----~~~~~~l~v~~~~~~~~~-----~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p 135 (291)
|.+++.+|+|.|+|.+.+..+. ......|.|...+..+.+ .......+....+.+|+.++|.|.+ .+.|
T Consensus 77 I~~v~~~DsG~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~~~p~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~-~~~p 155 (238)
T 2p1y_A 77 LELATPSQTSVYFCASGDLGQTNERLFFGHGTKLSVLGSADDAKKDAAKKDGQVRQSPQSLTVWEGETAILNCSY-ENSA 155 (238)
T ss_dssp ESSCCGGGCEEEEEEEEC------CEEECCCEEEEEECCCHHHHHHHHHHHTCCEEECSEEEEETTSCEEEEEEC-CCTT
T ss_pred EecCCcccCeeEEEEEEeCCCccccceeCCCeEEEEeccCCCCcCCcccceeeEEccCceEEEeCCCeEEEEEEE-ecCC
Confidence 9999999999999999876542 123456777654310000 0011223445678899999999999 6888
Q ss_pred CceeEEeECC
Q psy14540 136 PLTISWLKNG 145 (291)
Q Consensus 136 ~~~~~W~~~~ 145 (291)
.+.+.|++++
T Consensus 156 ~~~i~W~k~~ 165 (238)
T 2p1y_A 156 FDYFPWYQQF 165 (238)
T ss_dssp CCEEEEEEEC
T ss_pred CCcEEEEEEC
Confidence 8999999964
No 162
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}
Probab=99.87 E-value=7.8e-22 Score=151.78 Aligned_cols=190 Identities=22% Similarity=0.237 Sum_probs=122.7
Q ss_pred CCcceeecceeeeecCCcEEEEEEecCCCC-CeeEEE-ECCeecCCC-eeEeceEEeeccceEEEEEEeecCCCCCe-EE
Q psy14540 2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPT-PHISWK-LDGYPLAGD-RFVMGQYMSLHGDVISHVNISSVRVEDSG-IY 77 (291)
Q Consensus 2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~-~~v~W~-~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~d~G-~y 77 (291)
+|.+...+....+.+|+.+.|.|.+.+ |. +.+.|+ ++|..+... ++.. ... ..|.|.+++.+|+| .|
T Consensus 91 ~~~~~~~~~~~~~~~g~~v~l~C~~~~-p~~~~v~W~~~~g~~l~~~~~~~~-----~~~---~~L~i~~v~~~d~G~~Y 161 (290)
T 2o26_X 91 PAKLFLVGLPLFGKEDSDALVRCPLTD-PQVSQYSLIECDGKSLPTDLTFVP-----NPK---AGITIKNVKRAYHRLCV 161 (290)
T ss_dssp SSCCBCCCCCEEEETTSCEEECCCBSC-CSCEEEEEEETTSCCCCTTCEEEE-----ETT---TEEEEESCCGGGTTCEE
T ss_pred CCcccccccceEEecCCeEEEeCcCCC-CCCceEEEEeCCCcCCCCCCceee-----CCC---CCEEEecccHHHCCCEE
Confidence 454455666778899999999999985 66 899995 688777632 2211 111 24899999999999 99
Q ss_pred EEEEeCCCCce-eeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCce-eEEeECCEec----cCC
Q psy14540 78 QCTATNRVGSQ-THSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLT-ISWLKNGLPI----LSD 151 (291)
Q Consensus 78 ~C~~~~~~~~~-~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~-~~W~~~~~~~----~~~ 151 (291)
+|.+.+..+.. +..+.+.|...+..++ .....+....+.+|+.++|.|.+ .+.|.+. +.|++++..+ ...
T Consensus 162 ~C~a~n~~~~~~s~~~~l~V~~~~~~~P---~i~~~~~~~~v~~G~~v~l~C~~-~g~p~p~~i~W~~~~~~~~~~~~~~ 237 (290)
T 2o26_X 162 RCAAQRDGTWLHSDKFTLKVREAIKAIP---VVSVPETSHLLKKGDTFTVVCTI-KDVSTSVNSMWLKMNPQPQHIAQVK 237 (290)
T ss_dssp EEEEEETTEEEECCCEEEEEECCCCSCC---EEECSCSBCCCCTTCCEEEEEEE-EESSTTCEEEEEEESSSEEECCCEE
T ss_pred EEEEEECCceEEeEEEEEEEEeCCCCCC---ccccCCCcceEecCCcEEEEEEE-ecCCcceeEEEecCCCCCccceeec
Confidence 99999874442 3356777764332221 12233344578899999999999 5888886 9999998763 221
Q ss_pred CceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCc
Q psy14540 152 AEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNH 231 (291)
Q Consensus 152 ~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~ 231 (291)
......... .......|.|.++..+|+|.|+|.|.|..|..+.
T Consensus 238 ~~~~~~~~~-------------------------------------~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~ 280 (290)
T 2o26_X 238 HNSWHRGDF-------------------------------------NYERQETLTISSARVDDSGVFMCYANNTFGSANV 280 (290)
T ss_dssp CCEEEEETT-------------------------------------EEEEEEEEEESSCCSSSCEEEEEEEECSSCEEEE
T ss_pred ccccccCce-------------------------------------eeEEEEEEEEcCCCcccCeEEEEEEeCCCCcEEE
Confidence 111111000 0001245677777777777777777777777777
Q ss_pred eeEEEEecCC
Q psy14540 232 SSNLRVNVPP 241 (291)
Q Consensus 232 ~~~l~v~~~p 241 (291)
.+.|.|..+|
T Consensus 281 ~~~l~V~~~P 290 (290)
T 2o26_X 281 TTTLKVVEKG 290 (290)
T ss_dssp EEEECC----
T ss_pred EEEEEEEeCC
Confidence 7777776554
No 163
>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2
Probab=99.87 E-value=1.7e-22 Score=148.26 Aligned_cols=138 Identities=21% Similarity=0.320 Sum_probs=90.8
Q ss_pred ceeecceeeeecCCcEEEEEEecCCCCCeeEEEEC--CeecC-------------CCeeEeceEEeeccceEEEEEEeec
Q psy14540 5 LIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLD--GYPLA-------------GDRFVMGQYMSLHGDVISHVNISSV 69 (291)
Q Consensus 5 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~--~~~~~-------------~~~~~~~~~~~~~~~~~~~l~i~~~ 69 (291)
+.. |....+.+|++++|.|.+.+.+.+.+.|+++ +..+. ..++.. ......++|.|.++
T Consensus 3 v~q-p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~-----~~~~~~~~L~I~~v 76 (212)
T 1nfd_E 3 LIQ-PSSASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSG-----STSGTTATLTISGA 76 (212)
T ss_dssp EEC-CSEEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEE-----EEETTEEEEEETTC
T ss_pred eEC-CCeEEEeCCCcEEEEEecCCCCCCeEEEEEECCCCCcEEEEEeccccCCCccccEEE-----EeeCCEEEEEECcC
Confidence 445 8888999999999999988776778999984 32221 112111 12334567999999
Q ss_pred CCCCCeEEEEEEeCCCC-c--eeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCC-ceeEEeECC
Q psy14540 70 RVEDSGIYQCTATNRVG-S--QTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPP-LTISWLKNG 145 (291)
Q Consensus 70 ~~~d~G~y~C~~~~~~~-~--~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~-~~~~W~~~~ 145 (291)
+.+|+|.|+|.+.+... . ......+.|...+..++ ... .......+.+|+.++|.|.+....|. +.+.|+++|
T Consensus 77 ~~~D~G~Y~C~~~n~~~~~~~~~~~~~l~V~~~~~~~p--~v~-~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g 153 (212)
T 1nfd_E 77 QPEDEAAYYCLSSYGDNNDLVFGSGTQLTVLRGPKSSP--KVT-VFPPSPEELRTNKATLVCLVNDFYPGSATVTWKANG 153 (212)
T ss_dssp CGGGCSEEEEEEEETTTTEEEECCCEEEEEECCCCBCC--EEE-CCCCCHHHHHTTEECCCEEEEEEBSSCCEEEEEETT
T ss_pred CcccCEEEEEEEEcccCcccccCCceEEEEccCCCCCC--EEE-eeCCchHhccCCceEEEEEEEeeECCccEEEEEECC
Confidence 99999999999985222 1 23345566654332111 111 11222234579999999999544455 799999999
Q ss_pred EeccCC
Q psy14540 146 LPILSD 151 (291)
Q Consensus 146 ~~~~~~ 151 (291)
..+...
T Consensus 154 ~~~~~~ 159 (212)
T 1nfd_E 154 ATINDG 159 (212)
T ss_dssp EEECSS
T ss_pred eEcCCC
Confidence 887644
No 164
>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2
Probab=99.87 E-value=1e-21 Score=160.14 Aligned_cols=185 Identities=16% Similarity=0.206 Sum_probs=114.6
Q ss_pred CcceeecceeeeecCCcEEEEEEecC-CCCC-eeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEE
Q psy14540 3 PQLIYKFIQQTLQPGPPVSLKCIATG-NPTP-HISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCT 80 (291)
Q Consensus 3 p~~~~~~~~~~v~~g~~v~l~C~~~~-~~~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~ 80 (291)
|.+...+....+.+|+.++|.|.+.+ .|.+ .+.|++++..+....... ..........+.|.|.++...| |.|+|.
T Consensus 124 P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~-~~~~~~~~~~s~L~i~~~~~~d-g~Y~C~ 201 (444)
T 1igt_B 124 PSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPA-VLQSDLYTLSSSVTVTSSTWPS-QSITCN 201 (444)
T ss_dssp CEEEEECCCSSCCCSSCEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCC-EEETTEEEEEEEEEECSTTTTT-SCCEEE
T ss_pred CceeEecccccCCCCCcEEEEEEEcceeCCCcEEEEecCCCCCCeEecCc-cccCCcEEEEEEEEEchhhcCC-CeEEEE
Confidence 44443333334579999999999987 4665 999999987643100000 0000001123568999999999 999999
Q ss_pred EeCCCCceeeeeeEEEEcC------------CCCCcccceeccCCccee-ecCCCceEEEEEeeCCC---C-CceeEEeE
Q psy14540 81 ATNRVGSQTHSADMRVYDA------------PGQPQDVKLVTSNSRSIK-VHSGDRAGVQCLVTKGD---P-PLTISWLK 143 (291)
Q Consensus 81 ~~~~~~~~~~~~~l~v~~~------------~~~~~~~~~~~~~~~~~~-~~~g~~~~l~C~~~~~~---p-~~~~~W~~ 143 (291)
+.+..+.......+.+... .............+.... +.+|+.++|.|.+. +. | .+.+.|++
T Consensus 202 a~n~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~~G~~~~L~C~~~-g~~~~p~~~~v~W~k 280 (444)
T 1igt_B 202 VAHPASSTKVDKKIEPRGPTIKPCPPCKCPAPNLLGGPSVFIFPPKIKDVLMISLSPIVTCVVV-DVSEDDPDVQISWFV 280 (444)
T ss_dssp EEETTTTEEEEEECCCCCCSCCCCCCCSCCCSCCCCCCEEEEECCCHHHHHCTTSCCEEEEEEE-EECTTCCCCEEEEEE
T ss_pred EEeCCCCcceEEEeccCCCCcccCCccccCCcccCCCceEEecCCchhheeecCCCcEEEEEEe-ecccCCCCeEEEEEE
Confidence 9988776543333322100 000000111112222222 57899999999995 55 3 46999999
Q ss_pred CCEeccCCCce--EEeccC--CceEEEEEeeCCCCCceeEEEEEEecCCCC
Q psy14540 144 NGLPILSDAEI--TIRSSG--EYTSSLSIATLSTGHSGNYTCVASNTVASD 190 (291)
Q Consensus 144 ~~~~~~~~~~~--~~~~~~--~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~ 190 (291)
++..+...... .....+ .....|.|..+..+|.|.|+|.|.|..+..
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~ 331 (444)
T 1igt_B 281 NNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWMSGKEFKCKVNNKDLPA 331 (444)
T ss_dssp TTEECSSTTCBCCEEECSSSEEEEEEEECCHHHHHTTCEEEEEEECTTCSS
T ss_pred CCccccCcccccceeCCCCcEEEEEEEEEcHHHhccCCcEEEEEEcCCCCC
Confidence 99887543221 111111 124579999999999999999999987765
No 165
>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}
Probab=99.87 E-value=7e-21 Score=143.73 Aligned_cols=139 Identities=17% Similarity=0.340 Sum_probs=93.5
Q ss_pred CCcceeecceeeeecCCcEEEEEEecCC--CCCeeEEEECC--eecC------------------CCeeEeceEEeeccc
Q psy14540 2 HPQLIYKFIQQTLQPGPPVSLKCIATGN--PTPHISWKLDG--YPLA------------------GDRFVMGQYMSLHGD 59 (291)
Q Consensus 2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~--~~~~v~W~~~~--~~~~------------------~~~~~~~~~~~~~~~ 59 (291)
+|.+...+..+++.+|++++|.|.+.+. +.+.+.|++.. .... ..++... .....
T Consensus 6 ~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~---~~~~~ 82 (256)
T 3juy_B 6 HQVQLVQSGAEVKKPGASVKVSCQASGYRFSHFTVHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFT---ADTSA 82 (256)
T ss_dssp -CCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEE---EETTT
T ss_pred ceEEEEecCCceecCCCeEEEEEEeecccccCceEEEEEECCCCCcEEEEEEEcCCCcEeecccCcceEEEE---EecCC
Confidence 5677788888999999999999999873 56789999832 2111 0111110 01223
Q ss_pred eEEEEEEeecCCCCCeEEEEEEeCC------------CCceeeeeeEEEEcCCCCCcc--------cceeccCCcceeec
Q psy14540 60 VISHVNISSVRVEDSGIYQCTATNR------------VGSQTHSADMRVYDAPGQPQD--------VKLVTSNSRSIKVH 119 (291)
Q Consensus 60 ~~~~l~i~~~~~~d~G~y~C~~~~~------------~~~~~~~~~l~v~~~~~~~~~--------~~~~~~~~~~~~~~ 119 (291)
..++|+|.+++.+|+|.|.|.+.+. .........|.|...+..... .......+....+.
T Consensus 83 ~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 162 (256)
T 3juy_B 83 NTAYMELRSLRSADTAVYYCARVGEWGWDDSPYDNYYMDVWGKGTTVIVSSGGGGSGGGGSGGGGSEIVLTQAPGTLSLS 162 (256)
T ss_dssp TEEEEEECSCCGGGCEEEEEEECCCCCTTCCTTTTCSCCEECCCEEEEECSCC----------CCCCCCEEEECSEEEEC
T ss_pred CEEEEEECCCCcccCEEEEEeEEeccccccccccccceeEECCceEEeecCCcccccccccCCCcceeEEEecCCeEEEe
Confidence 4578999999999999999999875 233444566777664321000 11222345567888
Q ss_pred CCCceEEEEEeeCCCCC-ceeEEeEC
Q psy14540 120 SGDRAGVQCLVTKGDPP-LTISWLKN 144 (291)
Q Consensus 120 ~g~~~~l~C~~~~~~p~-~~~~W~~~ 144 (291)
+|+.++|.|.+ .+.+. +.+.|++.
T Consensus 163 ~G~~v~L~C~~-~~~~~~~~v~W~k~ 187 (256)
T 3juy_B 163 PGERATFSCRS-SHSIRSRRVAWYQH 187 (256)
T ss_dssp TTSCEEEEEEE-SSCCTTCCEEEEEE
T ss_pred CCCCEEEEEEE-CCCcCCeeEEEEEE
Confidence 99999999999 55664 89999983
No 166
>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1
Probab=99.87 E-value=1.2e-20 Score=141.72 Aligned_cols=136 Identities=20% Similarity=0.369 Sum_probs=89.1
Q ss_pred CcceeecceeeeecCCcEEEEEEecCCC--CCeeEEEECC--eecC------------------CCeeEeceEEeeccce
Q psy14540 3 PQLIYKFIQQTLQPGPPVSLKCIATGNP--TPHISWKLDG--YPLA------------------GDRFVMGQYMSLHGDV 60 (291)
Q Consensus 3 p~~~~~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~--~~~~------------------~~~~~~~~~~~~~~~~ 60 (291)
+.+. .|....+.+|++++|.|.+.+.| .+.+.|+++. .... ..++... ......
T Consensus 4 ~~v~-~p~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~---~~~~~~ 79 (247)
T 2ghw_B 4 VQLV-QSGGGVVQPGKSLRLSCAASGFAFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTIS---RDNSKN 79 (247)
T ss_dssp CEEE-EECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEE---EETTTT
T ss_pred eEEE-ecCCEEEecCCcEEEEEEeccccCCCceEEEEEeCCCCceEEEEEEecCCCceeeCccccCcEEEE---EeCCCC
Confidence 3444 45668899999999999998866 5789999842 1110 1122111 111234
Q ss_pred EEEEEEeecCCCCCeEEEEEEeCCCCc--eeeeeeEEEEcCCCCC--------cccceeccCCcceeecCCCceEEEEEe
Q psy14540 61 ISHVNISSVRVEDSGIYQCTATNRVGS--QTHSADMRVYDAPGQP--------QDVKLVTSNSRSIKVHSGDRAGVQCLV 130 (291)
Q Consensus 61 ~~~l~i~~~~~~d~G~y~C~~~~~~~~--~~~~~~l~v~~~~~~~--------~~~~~~~~~~~~~~~~~g~~~~l~C~~ 130 (291)
.++|.|.+++.+|+|.|+|.+.+..+. ....+.|.|...+... .........+....+.+|+.++|.|.+
T Consensus 80 ~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~ 159 (247)
T 2ghw_B 80 TLYLQMNSLRAEDTAVYYCARDRSYYLDYWGQGTLVTVSSGGGGSGGGGSGGGGSETTLTQSPATLSLSPGERATLSCRA 159 (247)
T ss_dssp EEEEEECSCCGGGCEEEEEEEEETTEEEEECCCEEEEECSCC------------CCCCEEEECSEEEECTTSCEEEEEEE
T ss_pred EEEEEECcCCHHHCEEEEEeeeccCCccccCCceEEEEecccccccccccCCCCcceEEEccCCEEEecCCCcEEEEEEe
Confidence 577999999999999999999876221 2334567776542100 001112223445678899999999999
Q ss_pred eCCCCCceeEEeE
Q psy14540 131 TKGDPPLTISWLK 143 (291)
Q Consensus 131 ~~~~p~~~~~W~~ 143 (291)
.+.|.+.+.|++
T Consensus 160 -~~~~~~~v~W~k 171 (247)
T 2ghw_B 160 -SQSVRSNLAWYQ 171 (247)
T ss_dssp -SSCCTTCEEEEE
T ss_pred -CCCccceEEEEE
Confidence 677888999999
No 167
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*
Probab=99.87 E-value=3.7e-22 Score=157.64 Aligned_cols=190 Identities=16% Similarity=0.274 Sum_probs=101.9
Q ss_pred cceeeeecCCcEEEEEEe-----cCCCCCeeEEEECCeecCCC-eeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEe
Q psy14540 9 FIQQTLQPGPPVSLKCIA-----TGNPTPHISWKLDGYPLAGD-RFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTAT 82 (291)
Q Consensus 9 ~~~~~v~~g~~v~l~C~~-----~~~~~~~v~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~ 82 (291)
+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+... .+.. .+ ..|.|.+++.+|+|.|+|.+.
T Consensus 127 ~~~~~~~~g~~~~l~C~~~~~~~~g~p~~~v~W~k~~~~l~~~~~~~~------~~---~~L~i~~v~~~d~G~Y~C~a~ 197 (349)
T 4dep_C 127 PVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNFNNVIP------EG---MNLSFLIALISNNGNYTCVVT 197 (349)
T ss_dssp CEEEEETTCSEEEEECCSCTTSSCTTSCCEEEEEETTEECCSCSSEEE------ET---TEEEEESCCGGGCEEEEEEEE
T ss_pred CcceeeecCccEEEEcCCCcccccCCCCceEEEeeCCEECCCccceee------cC---CEEEEeeeeecCCcEEEEEEE
Confidence 445678899999999985 56788999999999988632 1111 11 458999999999999999999
Q ss_pred CCC-Cce---eeeeeEEEEcCCCCCcccceeccCCc-c-eeecCCCceEEEEEeeC---CCCCceeEEeECCEeccC-CC
Q psy14540 83 NRV-GSQ---THSADMRVYDAPGQPQDVKLVTSNSR-S-IKVHSGDRAGVQCLVTK---GDPPLTISWLKNGLPILS-DA 152 (291)
Q Consensus 83 ~~~-~~~---~~~~~l~v~~~~~~~~~~~~~~~~~~-~-~~~~~g~~~~l~C~~~~---~~p~~~~~W~~~~~~~~~-~~ 152 (291)
+.. +.. ...+.+.|...+....... ...... . ..+.+|+.++|.|.+.. +.|.+.+.|++++..+.. ..
T Consensus 198 n~~~g~~~~~~~~~~l~v~~~~~~~~~p~-i~~~~~~~~~~v~~G~~v~l~C~~~~~~~g~p~p~v~W~~~g~~l~~~~~ 276 (349)
T 4dep_C 198 YPENGRTFHLTRTLTVKVVGSPKNAVPPV-IHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITI 276 (349)
T ss_dssp EEETTEEEEEEEEEEEEEECCGGGCCSCE-EC----------------CCCEEEEECCCTTCCCEEEEESSCC-------
T ss_pred EeeCCEEEEEEEEEEEEEEccCCCCCCCe-EecCCCceeEEEecCCcEEEEEEEEEccCCCCCCEEEEEECCEEccccCC
Confidence 865 443 5666777765432110111 111121 1 26789999999999943 578899999999987754 11
Q ss_pred ceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCC-eeEEEEeeeCCccCCc
Q psy14540 153 EITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHS-GNYTCVASNTVASDNH 231 (291)
Q Consensus 153 ~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~-g~y~C~~~~~~~~~~~ 231 (291)
+.... ... ......+.+ ....|.|.++..+|. |.|+|.|.|..|....
T Consensus 277 ~~~~~-------~~~---~~~~~~~~~---------------------~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~ 325 (349)
T 4dep_C 277 DVTIN-------ESI---SHSRTEDET---------------------RTQILSIKKVTSEDLKRSYVCHARSAKGEVAK 325 (349)
T ss_dssp -CCCC-------EEE---ECCTTCCEE---------------------EEECC-------------CEEEEECSSCEEEE
T ss_pred ccccc-------cce---eeecCCCcE---------------------EEEEEEEeeccHHHcCCcEEEEEEcCCCcEEE
Confidence 11100 000 000011100 134688899999999 9999999999998888
Q ss_pred eeEEEEec
Q psy14540 232 SSNLRVNV 239 (291)
Q Consensus 232 ~~~l~v~~ 239 (291)
.+.|.|..
T Consensus 326 ~~~l~v~~ 333 (349)
T 4dep_C 326 AAKVKQKV 333 (349)
T ss_dssp ECC-----
T ss_pred EEEEeeec
Confidence 88888865
No 168
>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}
Probab=99.87 E-value=7.6e-21 Score=143.48 Aligned_cols=138 Identities=18% Similarity=0.265 Sum_probs=91.7
Q ss_pred CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECC--eecC--------------CCeeEeceEEeeccceEEEEE
Q psy14540 2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDG--YPLA--------------GDRFVMGQYMSLHGDVISHVN 65 (291)
Q Consensus 2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~--~~~~--------------~~~~~~~~~~~~~~~~~~~l~ 65 (291)
+..|...|..+.+.+|++++|.|.+.+.+.+.+.|++.. .... ..++.. ........++|.
T Consensus 3 ~~~v~q~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~---~~~~~~~~~sL~ 79 (256)
T 3tf7_C 3 AQSVTQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEA---EFSKSDSSFHLR 79 (256)
T ss_dssp -CEEECSCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECSTTCEE---EEETTTTEEEEE
T ss_pred ccEEEecCceEEecCCCeEEEEEEeCCCCCceEEEEEECCCCCeEEEEEEccCCcccccCCCeEE---EEcCCCCEEEEE
Confidence 356778888899999999999999988888999999832 1110 011111 001234457899
Q ss_pred EeecCCCCCeEEEEEEeCCCCc----eeeeeeEEEEcCCC-------------CCcccceeccCCcceeecCCCceEEEE
Q psy14540 66 ISSVRVEDSGIYQCTATNRVGS----QTHSADMRVYDAPG-------------QPQDVKLVTSNSRSIKVHSGDRAGVQC 128 (291)
Q Consensus 66 i~~~~~~d~G~y~C~~~~~~~~----~~~~~~l~v~~~~~-------------~~~~~~~~~~~~~~~~~~~g~~~~l~C 128 (291)
|.+++.+|+|.|.|.+.+..+. ....+.|.|..... ...........+....+.+|+.++|.|
T Consensus 80 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C 159 (256)
T 3tf7_C 80 KASVHRSDSAVYFCAVSAKGTGSKLSFGKGAKLTVSPGGGGSGGGGSGGGGSGGGGSEAAVTQSPRNKVTVTGENVTLSC 159 (256)
T ss_dssp ESSCCGGGCSEEEEEEECTTCTTCEEECCCEEEEEEC---------------------CCEEESCSEEEEETTCCEEECE
T ss_pred ECCCCcccCEEEEEEEecCCCccceEECCCeEEEEeCCCCCcCCCCcCcccCCCCcCccEEEecCCEEEEeCCCcEEEEE
Confidence 9999999999999999876442 23345677765100 000111222445556788999999999
Q ss_pred EeeCCCCCceeEEeEC
Q psy14540 129 LVTKGDPPLTISWLKN 144 (291)
Q Consensus 129 ~~~~~~p~~~~~W~~~ 144 (291)
.+ .+. .+.+.|++.
T Consensus 160 ~~-~~~-~~~v~W~k~ 173 (256)
T 3tf7_C 160 RQ-TNS-HNYMYWYRQ 173 (256)
T ss_dssp EE-CSC-CSEEEEEEE
T ss_pred Ec-CCC-ceEEEEEEE
Confidence 99 454 679999984
No 169
>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D
Probab=99.87 E-value=2.8e-20 Score=144.87 Aligned_cols=136 Identities=17% Similarity=0.222 Sum_probs=94.1
Q ss_pred CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEE
Q psy14540 2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTA 81 (291)
Q Consensus 2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~ 81 (291)
+|.+...+... +.+|++++|.|.+. .+.+.+.|++++..+....... ..........|.|.+++.+|+|.|+|.+
T Consensus 119 ~p~~~~~~~~~-v~~G~~v~L~C~~~-~~~~~~~w~k~g~~~~~~~~~~---~~~~~~~~~~L~i~~v~~~D~G~Y~C~a 193 (316)
T 3vh8_G 119 KPSLLAHPGPL-VKSGERVILQCWSD-IMFEHFFLHKEGISKDPSRLVG---QIHDGVSKANFSIGPMMLALAGTYRCYG 193 (316)
T ss_dssp CCEEEEESCSE-EETTCCEEEEEEES-SCCSEEEEEETTCCSCCEEEEC---EEETTEEEEEEEECSCCGGGCEEEEEEE
T ss_pred CCeEEecCCCc-cCCCCeEEEEEcCC-CCCcEEEEEECCCccccceeee---eecCCCceEEEEECCCChhhCceEEEEE
Confidence 45566555544 88999999999995 4567899999988765221111 1112234467999999999999999999
Q ss_pred eCCCCc-----eeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEecc
Q psy14540 82 TNRVGS-----QTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPIL 149 (291)
Q Consensus 82 ~~~~~~-----~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~ 149 (291)
.+..+. .+....+.|...+..|. .. ..+. ..+.+|+.++|.|.+ . .|.+.+.|+++|..+.
T Consensus 194 ~n~~g~~~~s~~s~~~~l~V~~~~~~p~--i~--~~~~-~~v~~G~~v~L~C~~-~-~~~~~~~W~k~g~~~~ 259 (316)
T 3vh8_G 194 SVTHTPYQLSAPSDPLDIVVTGPYEKPS--LS--AQPG-PKVQAGESVTLSCSS-R-SSYDMYHLSREGGAHE 259 (316)
T ss_dssp ECTTCTTBCCCCCCCEEEEEECSSCCCE--EE--EESC-SCCCTTSCCEEEEEE-S-SCCSEEEEEETTSSCC
T ss_pred ecCCCCccccCCCCCEEEEecCCCCCCe--EE--eCCC-CeecCCCcEEEEEEC-C-CCCcEEEEEECCCcCC
Confidence 987663 24556677765443331 11 1111 256789999999998 3 4778999999997664
No 170
>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1
Probab=99.87 E-value=1.7e-20 Score=141.57 Aligned_cols=133 Identities=18% Similarity=0.293 Sum_probs=88.1
Q ss_pred eecceeeeecCCcEEEEEEecCCC--CCeeEEEEC--CeecC-----------------CCeeEeceEEeeccceEEEEE
Q psy14540 7 YKFIQQTLQPGPPVSLKCIATGNP--TPHISWKLD--GYPLA-----------------GDRFVMGQYMSLHGDVISHVN 65 (291)
Q Consensus 7 ~~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~--~~~~~-----------------~~~~~~~~~~~~~~~~~~~l~ 65 (291)
..|....+.+|++++|.|.+.+.+ .+.+.|+++ +..+. ..++... .......++|+
T Consensus 5 ~~p~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~R~~~~---~~~~~~~~~L~ 81 (257)
T 1f3r_B 5 LESGPGLVRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSIS---RDTSKNQVFLK 81 (257)
T ss_dssp EEECCSEECTTSEEEEEEEEESSCTTTSCCEEEEEETTSCCEEEEEECSSSCEEECSSSSTTEEEE---EETTTTEEEEE
T ss_pred ECCCCccccCCceEEEEEEEecccCCCccEEEEEeCCCCCcEEEEEEecCCceeeCcccCCcEEEE---EECCCCEEEEE
Confidence 455667899999999999998764 688999985 22110 0111110 01123457899
Q ss_pred EeecCCCCCeEEEEEEeCCCC-------c--eeeeeeEEEEcCCCCC--------cccceeccCCcceeecCCCceEEEE
Q psy14540 66 ISSVRVEDSGIYQCTATNRVG-------S--QTHSADMRVYDAPGQP--------QDVKLVTSNSRSIKVHSGDRAGVQC 128 (291)
Q Consensus 66 i~~~~~~d~G~y~C~~~~~~~-------~--~~~~~~l~v~~~~~~~--------~~~~~~~~~~~~~~~~~g~~~~l~C 128 (291)
|.+++.+|+|.|.|.+.+..| . ....+.|.|...+... .........+....+.+|+.++|.|
T Consensus 82 I~~v~~~DsG~Y~C~a~n~~g~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C 161 (257)
T 1f3r_B 82 MNSLQTDDTGTYYCTRDLYGGYPLGFWYFDFWGPGTMVTVSSGGGGSGGGGSGGGGSDIKLTQSPSLLSASVGDRVTLSC 161 (257)
T ss_dssp EESCCTTCCEEEEEEEESSSSCCSSCCCEEEECCCEEEEECSSCCSSCCSSSCCCCCEECSCEETSEECCCTTCCEEEEE
T ss_pred ECCCCcccCEEEEEEEcccccCccccccccccCCceEEEEEeCCccccccccCCCccceEEEccCCEEEEcCCCCEEEEE
Confidence 999999999999999997643 1 1234567776543100 0011112234456788999999999
Q ss_pred EeeCCCCCceeEEeE
Q psy14540 129 LVTKGDPPLTISWLK 143 (291)
Q Consensus 129 ~~~~~~p~~~~~W~~ 143 (291)
.+ .+.|.+.+.|++
T Consensus 162 ~~-~~~~~~~v~W~k 175 (257)
T 1f3r_B 162 KG-SQNINNYLAWYQ 175 (257)
T ss_dssp EC-SSCCBTCEEEEE
T ss_pred EE-CCcCCCcEEEEE
Confidence 98 677778999999
No 171
>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}
Probab=99.87 E-value=3e-21 Score=146.90 Aligned_cols=198 Identities=15% Similarity=0.213 Sum_probs=123.8
Q ss_pred CcceeecceeeeecCCcEEEEEEecCCCCCeeEEEEC--CeecC------CCee-Eec-----eEE-eeccceEEEEEEe
Q psy14540 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLD--GYPLA------GDRF-VMG-----QYM-SLHGDVISHVNIS 67 (291)
Q Consensus 3 p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~--~~~~~------~~~~-~~~-----~~~-~~~~~~~~~l~i~ 67 (291)
+.+...|..+.+.+|++++|.|.+.+ +.+.+.|+|. +.... .... ... +.. .......++|.|.
T Consensus 28 ~~v~~~p~~v~v~~G~~v~L~C~~~~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~ 106 (270)
T 3qib_D 28 MKVIQTPRYLVKGQGQKAKMRCIPEK-GHPVVFWYQQNKNNEFKFLINFQNQEVLQQIDMTEKRFSAECPSNSPCSLEIQ 106 (270)
T ss_dssp CCCEEECSEEEEETTSCEEEEEECCT-TCCEEEEEEECTTCCEEEEEEEETTEEEEECHHHHHHEEEECCTTSCEEEEES
T ss_pred eeEEeCCCeEEEcCCCCEEEEEEecC-CCceEEEEEECCCCCcEEEEEECCCCceecCCccCCcEEEEeCCCcEEEEEEC
Confidence 45677788889999999999999865 6678999982 21110 0000 000 111 1112345789999
Q ss_pred ecCCCCCeEEEEEEeCCC----CceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCc-eeEEe
Q psy14540 68 SVRVEDSGIYQCTATNRV----GSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPL-TISWL 142 (291)
Q Consensus 68 ~~~~~d~G~y~C~~~~~~----~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~ 142 (291)
+++.+|+|.|.|.+.+.. ......+.+.|.........+......+....+..|+.++|.|.+....|.+ .+.|+
T Consensus 107 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~ 186 (270)
T 3qib_D 107 SSEAGDSALYLCASSLNWSQDTQYFGPGTRLLVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWW 186 (270)
T ss_dssp SCCGGGCEEEEEEEESCTTCCCCEECCCEEEEEESCSTTCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEEEEE
T ss_pred CCCHhHCeEEEEEEecCCCccceEECCcEEEEEccccccccCCceEEECCCccccccCCceEEEEEecceeCCCeEEEEE
Confidence 999999999999998532 2233445677775322111111121222333455699999999995447766 89999
Q ss_pred ECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCC-CeeEEEE
Q psy14540 143 KNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGH-SGNYTCV 221 (291)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~-~g~y~C~ 221 (291)
++|..+....... ...+..+..++.|.|.. .+.|.|.....+| +|.|+|.
T Consensus 187 k~g~~l~~~~~~~---------~~~~~~~~~~~~~~~~~--------------------~s~L~i~~~~~~d~~g~YtC~ 237 (270)
T 3qib_D 187 VNGKEVHSGVCTD---------PQPLKEQPALNDSRYAL--------------------SSRLRVSATFWQNPRNHFRCQ 237 (270)
T ss_dssp ETTEEECTTEEEC---------SSCEESCTTSSSCCEEE--------------------EEEEEEEHHHHHSTTCEEEEE
T ss_pred ECCEECCCCcccc---------cccccccccCCCCCEEE--------------------EEEEEEcHHHhccCCCeEEEE
Confidence 9998886432110 01112234445666765 2457778777777 9999999
Q ss_pred eeeCCccCC
Q psy14540 222 ASNTVASDN 230 (291)
Q Consensus 222 ~~~~~~~~~ 230 (291)
|.|......
T Consensus 238 v~~~~l~~~ 246 (270)
T 3qib_D 238 VQFYGLSEN 246 (270)
T ss_dssp EEECCBCTT
T ss_pred EEecCCCCc
Confidence 998875443
No 172
>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A
Probab=99.87 E-value=2e-20 Score=140.96 Aligned_cols=209 Identities=19% Similarity=0.252 Sum_probs=123.4
Q ss_pred cceeecceeeeecCCcEEEEEEecCCC--CCeeEEEEC--CeecC------------------CCeeEeceEEeeccceE
Q psy14540 4 QLIYKFIQQTLQPGPPVSLKCIATGNP--TPHISWKLD--GYPLA------------------GDRFVMGQYMSLHGDVI 61 (291)
Q Consensus 4 ~~~~~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~--~~~~~------------------~~~~~~~~~~~~~~~~~ 61 (291)
+++..|....+.+|++++|.|.+.+.+ .+.+.|+|. +..+. ..++.. ........
T Consensus 3 ~~~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~---~~~~~~~~ 79 (253)
T 3uzq_A 3 KLLEQSGAELVKPGASVRLSCTASGFNIKDTYMSWVKQRPEQGLEWIGRIDPANGDTKYDPKFQGKATI---TADTSSNT 79 (253)
T ss_dssp CCEEECCCEEECTTCCEEEEEEECSSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEE---EEETTTTE
T ss_pred eeEecCCCeeecCCCcEEEEEEeeCCcccCceEEEEEeCCCCCCEEEEEEccCCCcceeCCcCCCcEEE---EeecCCCe
Confidence 356778888999999999999998743 678999982 22111 011111 11122345
Q ss_pred EEEEEeecCCCCCeEEEEEEeCCCCce-eeeeeEEEEcCCC--------CCcccceeccCCcceeecCCCceEEEEEeeC
Q psy14540 62 SHVNISSVRVEDSGIYQCTATNRVGSQ-THSADMRVYDAPG--------QPQDVKLVTSNSRSIKVHSGDRAGVQCLVTK 132 (291)
Q Consensus 62 ~~l~i~~~~~~d~G~y~C~~~~~~~~~-~~~~~l~v~~~~~--------~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~ 132 (291)
++|.|.+++.+|+|.|.|.+.+..+.. .....|.|...+. .+.........+....+.+|+.++|.|.+ .
T Consensus 80 ~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~-~ 158 (253)
T 3uzq_A 80 AYLHLSSLTSGDTAVYYCSRGWEGFAYWGQGTLVTVSAGGGGSGGGGSGGGGSELVMTQTPASLAVSLGQRATISCRA-S 158 (253)
T ss_dssp EEEEECSCCGGGCEEEEEEECSSSCCEECCCEEEEECSSSCCCCC---------CCEEEECSEEEECTTSCEEEEEEE-S
T ss_pred EEEEeCCCCcccCEEEEEEEeeCCccEECCCcEEEEecCCccccccccCCCcccceEECcCCeEEEeCCCCEEEEEEe-c
Confidence 779999999999999999998755443 3456677764200 00001122233455788899999999999 5
Q ss_pred CCCCc----eeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEe
Q psy14540 133 GDPPL----TISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIA 208 (291)
Q Consensus 133 ~~p~~----~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~ 208 (291)
+.+.+ .+.|++++... ... +.+.... .+ . ......+..........|.|.
T Consensus 159 ~~~~~~~~~~v~W~r~~~~~--~~~------------~~~~~~~-----~~------~-~~~~~r~~~~~~~~~~~L~I~ 212 (253)
T 3uzq_A 159 ENVDRYGNSFMHWYQQKAGQ--PPK------------LLIYRAS-----NL------E-SGIPARFSGSGSRTDFTLTIN 212 (253)
T ss_dssp SCCEETTEECEEEEEECTTS--CCE------------EEEETTT-----EE------C-TTCCTTEEEEEETTEEEEEES
T ss_pred CccccCCCcEEEEEEECCCC--CCE------------EEEEEcc-----cc------C-CccCCceEEeCCCCEEEEEEC
Confidence 66665 99999853110 000 0000000 00 0 000011222222335678999
Q ss_pred eeecCCCeeEEEEeeeCCcc-CCceeEEEEecCCC
Q psy14540 209 TLSTGHSGNYTCVASNTVAS-DNHSSNLRVNVPPH 242 (291)
Q Consensus 209 ~~~~~~~g~y~C~~~~~~~~-~~~~~~l~v~~~p~ 242 (291)
++..+|+|.|.|.+.|.... -..-..|.|...+.
T Consensus 213 ~v~~~DsG~Y~C~~~n~~~~~fg~gt~l~v~~~~~ 247 (253)
T 3uzq_A 213 PVEADDVATYFCQRSNEVPWTFGGGTKLEIKRPLE 247 (253)
T ss_dssp SCCGGGCEEEEEEECSSSSCCBCCCEEEEECCC--
T ss_pred CCCHHHCEEEEEEEccCCCcEECCCEEEEEcCCCC
Confidence 99999999999999876522 23344566665443
No 173
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Probab=99.87 E-value=1.3e-20 Score=142.71 Aligned_cols=158 Identities=16% Similarity=0.263 Sum_probs=113.0
Q ss_pred ceeecceeeeecCCcEEEEEEe-cCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeC
Q psy14540 5 LIYKFIQQTLQPGPPVSLKCIA-TGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATN 83 (291)
Q Consensus 5 ~~~~~~~~~v~~g~~v~l~C~~-~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~ 83 (291)
+...+....+.+|+.+.|.|.+ .+.+.+.+.|++++..+... .....|.|.+++..|+|.|+|.+.+
T Consensus 85 ~~~~~~~~~~~~g~~v~l~C~~~~~~p~~~v~W~~~g~~~~~~------------~~~~~l~i~~~~~~d~G~Y~C~~~n 152 (262)
T 3rjd_A 85 LLLQVSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFF------------HWNSNLTILKTNISHNGTYHCSGMG 152 (262)
T ss_dssp EEEEESCSEEETTSCEEEEEEEGGGCCCEEEEEEETTEEEEEE------------EECCCEEESSCCGGGCEEEEEEEES
T ss_pred eEecCCCeEEecCCeEEEEEEccCCCCCceEEEEECCcccccc------------CCCCeEEEEECChhhCEEEEEEEeC
Confidence 4455666778999999999999 55778899999999876411 0113588999999999999999998
Q ss_pred CCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCC-c----eeEEeECCEeccCCCceEEec
Q psy14540 84 RVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPP-L----TISWLKNGLPILSDAEITIRS 158 (291)
Q Consensus 84 ~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~-~----~~~W~~~~~~~~~~~~~~~~~ 158 (291)
..+.....+.+.|......| .....+ ...+.+|+.+.|.|.+ .+.|. + .+.|++++..+...
T Consensus 153 ~~~~~~~~~~l~V~~~~~~p----~~~~~~-~~~~~~g~~~~l~C~~-~~~p~~p~~~~~~~w~~~~~~~~~~------- 219 (262)
T 3rjd_A 153 KHRYTSAGISVTVKELFPAP----VLNASV-TSPLLEGNLVTLSCET-KLLLQRPGLQLYFSFYMGSKTLRGR------- 219 (262)
T ss_dssp SSEEEEECEEEEEECSSCCC----EEEESS-CSSEETTCCEEEEEEC-CCCCC-----EEEEEEETTEEEEEE-------
T ss_pred CCCccccceEEEeccCCCCC----eEeecC-ceeecCCCeEEEEeEc-ccCCCCCCccEEEEEEeCCcEeccc-------
Confidence 88777777888887653222 111112 3567899999999999 56654 4 37899998876421
Q ss_pred cCCceEEEEEeeCCCCCceeEEEEEEecCCC
Q psy14540 159 SGEYTSSLSIATLSTGHSGNYTCVASNTVAS 189 (291)
Q Consensus 159 ~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 189 (291)
.....|.|..+..+|.|.|+|.|.|..|.
T Consensus 220 --~~~~~L~i~~v~~~d~G~Y~C~a~n~~G~ 248 (262)
T 3rjd_A 220 --NTSSEYQILTARREDSGLYWCEAATEDGN 248 (262)
T ss_dssp --ESCCEEEESSCCGGGCEEEEEEEEETTSS
T ss_pred --CCCceEEEEEechhhCeEEEEEEEcccCc
Confidence 11345667777777777777777766664
No 174
>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H
Probab=99.86 E-value=3e-20 Score=140.07 Aligned_cols=127 Identities=22% Similarity=0.364 Sum_probs=86.9
Q ss_pred eeecceeeeecCCcEEEEEEecCCC--CCeeEEEEC--CeecC------------------CCeeEeceEEeeccceEEE
Q psy14540 6 IYKFIQQTLQPGPPVSLKCIATGNP--TPHISWKLD--GYPLA------------------GDRFVMGQYMSLHGDVISH 63 (291)
Q Consensus 6 ~~~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~--~~~~~------------------~~~~~~~~~~~~~~~~~~~ 63 (291)
+..|....+.+|++++|.|.+.+.+ .+.+.|+++ +..+. ..++... .......++
T Consensus 4 l~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~---~~~~~~~~~ 80 (256)
T 1nqb_A 4 LQQSGAELVKPGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNSGGTKYNEKFKSKATLT---VDKPSSTAY 80 (256)
T ss_dssp EEECCCEEECTTCCEEEEEEECSSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGTTTEEEE---EETTTTEEE
T ss_pred EECCCCeeecCCCcEEEEEEeccccCCCceEEEEEECCCCCcEEEEEEecCCCceeeCcccCCeEEEE---EecCCCEEE
Confidence 4567778999999999999998764 678999994 22210 0111110 011234578
Q ss_pred EEEeecCCCCCeEEEEEEeCCCCc-----eeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCc-
Q psy14540 64 VNISSVRVEDSGIYQCTATNRVGS-----QTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPL- 137 (291)
Q Consensus 64 l~i~~~~~~d~G~y~C~~~~~~~~-----~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~- 137 (291)
|.|.+++.+|+|.|.|.+.+..+. ....+.|.|...+ .....+....+.+|+.++|.|.+ .+.|.+
T Consensus 81 L~I~~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~-------~v~~~p~~~~v~~G~~v~L~C~~-~~~~~~~ 152 (256)
T 1nqb_A 81 MQLSSLTSEDSAVYYCARYDYYGSSYFDYWGQGTTVTVSSDI-------ELTQTPLSLPVSLGDQASISCRS-SQSIVHS 152 (256)
T ss_dssp EEECSCCGGGCEEEEEEECCTTSSSSCSEECCCEEEEECCCC-------CEEEECSEEEECTTCCEEEEEEE-SSCCBCT
T ss_pred EEECcCChhhCEEEEEEEeeccCccceeEEcCceeeeecccc-------cEEecCcEEEEecCCcEEEEeEe-cCccccc
Confidence 999999999999999999977542 2234566665332 11123445678899999999999 566654
Q ss_pred ----eeEEeE
Q psy14540 138 ----TISWLK 143 (291)
Q Consensus 138 ----~~~W~~ 143 (291)
.+.|++
T Consensus 153 ~~~~~v~W~k 162 (256)
T 1nqb_A 153 NGNTYLEWYL 162 (256)
T ss_dssp TSCBCEEEEE
T ss_pred ccceEEEEEE
Confidence 999999
No 175
>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*
Probab=99.86 E-value=1.8e-20 Score=140.26 Aligned_cols=140 Identities=18% Similarity=0.219 Sum_probs=89.6
Q ss_pred CcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECC--eecC-----CCeeE---eceEEeeccceEEEEEEeecCCC
Q psy14540 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDG--YPLA-----GDRFV---MGQYMSLHGDVISHVNISSVRVE 72 (291)
Q Consensus 3 p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~--~~~~-----~~~~~---~~~~~~~~~~~~~~l~i~~~~~~ 72 (291)
+.|...|..+.+.+|++++|.|.+.+.+.+.+.|+++. .... ..... ..+.........++|.|.+++.+
T Consensus 2 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~ 81 (242)
T 2znx_A 2 IVLTQSPATLSVTPGNSVSLSCRASQSIGNNLHXYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETE 81 (242)
T ss_dssp CCEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGG
T ss_pred CcEEEcCCeEEEcCCCcEEEEEEeCCCCCceEEEEEeCCCCCceEEEEeccccCCCCCCCEEEecCCCEEEEEECCCChH
Confidence 46778888899999999999999998888899999953 1110 00000 00111111234567999999999
Q ss_pred CCeEEEEEEeCCCCc-eeeeeeEEEEcCCCCC-------cccceeccCCcceeecCCCceEEEEEeeCCCC--CceeEEe
Q psy14540 73 DSGIYQCTATNRVGS-QTHSADMRVYDAPGQP-------QDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDP--PLTISWL 142 (291)
Q Consensus 73 d~G~y~C~~~~~~~~-~~~~~~l~v~~~~~~~-------~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p--~~~~~W~ 142 (291)
|+|.|.|.+.+..+. ....+.|.|...+..+ ...... ..+....+.+|+.++|.|.+ .+.| .+.+.|+
T Consensus 82 D~G~Y~C~~~n~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~G~~v~L~C~~-~g~~~~~~~v~W~ 159 (242)
T 2znx_A 82 DFGMYFCQQSNSXPYTFGGGTKLEITGGGGSGGGGSGGGGSDIQL-QESGPSLVKPSQTLSLTCSV-TGDSITSDYXSXI 159 (242)
T ss_dssp GCEEEEEEECSSSSCEECCCEEEEEC---------------CCEE-EEECCSEECTTSCEEEEEEE-ESSCGGGSCEEEE
T ss_pred HCEEEEEeEecCCceEECCCEEEEEcCCCCCCcccccccccceee-ecCCcceecCCCeEEEEEEE-EccccCCcceeeE
Confidence 999999999876432 2334567776544200 001111 11222458899999999999 4554 5789999
Q ss_pred EC
Q psy14540 143 KN 144 (291)
Q Consensus 143 ~~ 144 (291)
++
T Consensus 160 k~ 161 (242)
T 2znx_A 160 RK 161 (242)
T ss_dssp EE
T ss_pred ee
Confidence 85
No 176
>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H
Probab=99.86 E-value=5.2e-21 Score=141.04 Aligned_cols=136 Identities=19% Similarity=0.308 Sum_probs=90.1
Q ss_pred eecceeeeecCCcEEEEEEecCCC--CCeeEEEEC--CeecC------------------CCeeEeceEEeeccceEEEE
Q psy14540 7 YKFIQQTLQPGPPVSLKCIATGNP--TPHISWKLD--GYPLA------------------GDRFVMGQYMSLHGDVISHV 64 (291)
Q Consensus 7 ~~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~--~~~~~------------------~~~~~~~~~~~~~~~~~~~l 64 (291)
..|....+.+|++++|.|.+.+.+ .+.+.|+|+ +..+. ..++... .......++|
T Consensus 5 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~---~~~~~~~~~L 81 (219)
T 1c1e_H 5 VQSGPELKKPGETVKISCKASGYMFTNYGMNWVKQAPGKALKLMGWINPYTGESTFADDFKGRFAFF---LETSATTAYL 81 (219)
T ss_dssp EECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECSSSCCEEECGGGCSSEEEE---EEGGGTEEEE
T ss_pred eCCCCeEecCCCcEEEEEEEeCcccccceEEEEEeCCCCCcEEEEEEecCCCceEeCcccCCcEEEE---EecCCCEEEE
Confidence 456677899999999999998754 678999996 33221 0111110 0112335789
Q ss_pred EEeecCCCCCeEEEEEEeCCCCc----eeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCc-ee
Q psy14540 65 NISSVRVEDSGIYQCTATNRVGS----QTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPL-TI 139 (291)
Q Consensus 65 ~i~~~~~~d~G~y~C~~~~~~~~----~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~ 139 (291)
.|.+++.+|+|.|+|.+.+..+. ....+.|.|...+..+ ....... ....+.+|+.++|.|.+.++.|.+ .+
T Consensus 82 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~--P~i~~~~-~~~~~~~g~~v~L~C~~~g~~P~p~~v 158 (219)
T 1c1e_H 82 QINNLKNEDMATYFCARGTTIVRAMDYWGQGTSLTVSSAKTTP--PSVYPLA-PGSAAQTNSMVTLGCLVKGYFPEPVTV 158 (219)
T ss_dssp EECSCCGGGCEEEEEEEEETTTTEEEEECCCEEEEECCCCCBC--CEEEEEC-CCSSSCCSSEEEEEEEEEEEBSSCCEE
T ss_pred EECCCCcccCEEEEEEEeccCcccceeecCceEEEEecCCCCC--CeEEEec-CccccccCCeEEEEEEcccccCCCeEE
Confidence 99999999999999999876531 2235567776532111 1111111 122456899999999995438888 99
Q ss_pred EEeECCEec
Q psy14540 140 SWLKNGLPI 148 (291)
Q Consensus 140 ~W~~~~~~~ 148 (291)
.|++++..+
T Consensus 159 ~W~~~g~~~ 167 (219)
T 1c1e_H 159 TWNSGSLSS 167 (219)
T ss_dssp EEGGGTBCT
T ss_pred EEEeCCccc
Confidence 999998764
No 177
>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}
Probab=99.86 E-value=4.2e-21 Score=145.16 Aligned_cols=144 Identities=19% Similarity=0.249 Sum_probs=83.9
Q ss_pred CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEEC--CeecCC-CeeE-------e------ceE-EeeccceEEEE
Q psy14540 2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLD--GYPLAG-DRFV-------M------GQY-MSLHGDVISHV 64 (291)
Q Consensus 2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~--~~~~~~-~~~~-------~------~~~-~~~~~~~~~~l 64 (291)
+|.|...|..+.+.+|++++|.|.+.+.+.+.+.|++. +..... .... . ... ........++|
T Consensus 2 s~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L 81 (259)
T 3omz_A 2 SSNLEGRTKSVIRQTGSSAEITCDLAEGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDTYGSTRKNLRM 81 (259)
T ss_dssp ---------CEEEETTCCEEEECCC-----CEEEEEEECTTSCCEEEEEEETTTCCEEECTTCCBTTEEEECC--CCCEE
T ss_pred ccccccCCceeEecCCCcEEEEEEEccCCCcEEEEEEECCCCCcEEEEEEecCcCccccCCCCCcceeEeecCCCCeEEE
Confidence 57888889999999999999999998877889999982 211100 0000 0 000 01112234679
Q ss_pred EEeecCCCCCeEEEEEEeCCCC---ceeeeeeEEEEcCCCCCcc----------cceeccCCcceeecCCCceEEEEEee
Q psy14540 65 NISSVRVEDSGIYQCTATNRVG---SQTHSADMRVYDAPGQPQD----------VKLVTSNSRSIKVHSGDRAGVQCLVT 131 (291)
Q Consensus 65 ~i~~~~~~d~G~y~C~~~~~~~---~~~~~~~l~v~~~~~~~~~----------~~~~~~~~~~~~~~~g~~~~l~C~~~ 131 (291)
.|.+++.+|+|.|.|.+.+..+ .......|.|......+.. .......+....+.+|+.++|.|.+.
T Consensus 82 ~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~ 161 (259)
T 3omz_A 82 ILRNLIENDSGVYYCATWDQNYYKKLFGSGTSLVVTDKQGSADDAKKDAAKKDGAQKVTQAQSSVSMPVRKAVTLNCLYE 161 (259)
T ss_dssp EESSCCGGGCEEEEEEEECTTSSCEEECCCEEEEEEC------------------CEEECCCCCEEEETTCCEEECCEEE
T ss_pred EECCCCcccCEEEEEEEeeCCccccEECCCCEEEEecCCCCccccccccccccCCeeeEEeCCEEEEcCCCCEEEEEECC
Confidence 9999999999999999987655 3444566777764322210 11233445567889999999999885
Q ss_pred CCCCCceeEEeECC
Q psy14540 132 KGDPPLTISWLKNG 145 (291)
Q Consensus 132 ~~~p~~~~~W~~~~ 145 (291)
...+.+.+.|++++
T Consensus 162 ~~~~~~~v~W~k~~ 175 (259)
T 3omz_A 162 TSWWSYYIFWYKRL 175 (259)
T ss_dssp CCCSSCEEEEEEEC
T ss_pred CccCCceEEEeeeC
Confidence 44578899999853
No 178
>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A
Probab=99.86 E-value=1.9e-20 Score=140.55 Aligned_cols=141 Identities=15% Similarity=0.235 Sum_probs=89.2
Q ss_pred CcceeecceeeeecCCcEEEEEEecCCC-----CCeeEEEECC--eecC-----CCeeE---eceEEeeccceEEEEEEe
Q psy14540 3 PQLIYKFIQQTLQPGPPVSLKCIATGNP-----TPHISWKLDG--YPLA-----GDRFV---MGQYMSLHGDVISHVNIS 67 (291)
Q Consensus 3 p~~~~~~~~~~v~~g~~v~l~C~~~~~~-----~~~v~W~~~~--~~~~-----~~~~~---~~~~~~~~~~~~~~l~i~ 67 (291)
..+...|..+.+.+|++++|.|.+.+.+ .+.+.|+++. ..+. ..... ..+.........++|.|.
T Consensus 2 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~ 81 (247)
T 1svz_A 2 ILMTQTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKIS 81 (247)
T ss_dssp CCEEEECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEES
T ss_pred CcEEecCCeEEecCCCCEEEEEeCCCcccccCCCceEEEEEECCCCCceEEEEEecccCCCCCCcEEeccCCCEEEEEEC
Confidence 3567778889999999999999998866 6889999842 2110 00000 011111122345679999
Q ss_pred ecCCCCCeEEEEEEeCCCCc-eeeeeeEEEEcCCCC-------CcccceeccCCcceeecCCCceEEEEEeeCCCC--Cc
Q psy14540 68 SVRVEDSGIYQCTATNRVGS-QTHSADMRVYDAPGQ-------PQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDP--PL 137 (291)
Q Consensus 68 ~~~~~d~G~y~C~~~~~~~~-~~~~~~l~v~~~~~~-------~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p--~~ 137 (291)
+++.+|+|.|.|.+.+..+. ......|.|...+.. +........ +....+.+|+.++|.|.+. +.+ .+
T Consensus 82 ~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~G~~v~L~C~~~-~~~~~~~ 159 (247)
T 1svz_A 82 RVEAEDLGIYYCFQGSHFPPTFGGGTKLEIKGGGGSGGGGSGGGGSEVQLQQ-SGPELKKPGETVKISCKAT-NYAFTDY 159 (247)
T ss_dssp SCCGGGCEEEEEEECSSSSCEECCCEEEEEC---------------CCEEEE-CCCEEECTTCCEEEEEEEE-SSCGGGS
T ss_pred CCCHHHCEEEEEEEccCCccEECCCEEEEEECCccccccccccccCceEEeC-CCceeecCCCcEEEEEEEc-CcccCCc
Confidence 99999999999999876443 233456777654310 001111112 2234588999999999994 543 57
Q ss_pred eeEEeECC
Q psy14540 138 TISWLKNG 145 (291)
Q Consensus 138 ~~~W~~~~ 145 (291)
.+.|++++
T Consensus 160 ~v~W~k~~ 167 (247)
T 1svz_A 160 SMHWVKQA 167 (247)
T ss_dssp CEEEEEEC
T ss_pred EEEEEEeC
Confidence 89999963
No 179
>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*
Probab=99.86 E-value=2.5e-20 Score=140.22 Aligned_cols=141 Identities=18% Similarity=0.271 Sum_probs=90.6
Q ss_pred CcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCe-----ecC--CCee---EeceEEeeccceEEEEEEeecCCC
Q psy14540 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGY-----PLA--GDRF---VMGQYMSLHGDVISHVNISSVRVE 72 (291)
Q Consensus 3 p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~-----~~~--~~~~---~~~~~~~~~~~~~~~l~i~~~~~~ 72 (291)
+.+...|..+.+.+|++++|.|.+.+.+.+.+.|+|+.. .+. .... ...+.........++|.|.+++.+
T Consensus 5 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~i~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~ 84 (250)
T 3esu_F 5 IVLIQSTSSLSASLGDRVTISCRASQDIRNYLNWYQQKPDGTVKLLIYYTSRLQSGVPSRFSGSGSGTDYSLTISNLEQE 84 (250)
T ss_dssp CCEECSCSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred eeEEecCCEEEeeCCCcEEEEEEecccCCceEEEEEECCCCCCEEEEEEeCCCCCCCCCCEEEeCCCCEEEEEEccCChh
Confidence 456677888889999999999999998888999998531 100 0000 001111122334568999999999
Q ss_pred CCeEEEEEEeCCCCc-eeeeeeEEEEcCCCCC------------cccceeccCCcceeecCCCceEEEEEeeCCCC--Cc
Q psy14540 73 DSGIYQCTATNRVGS-QTHSADMRVYDAPGQP------------QDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDP--PL 137 (291)
Q Consensus 73 d~G~y~C~~~~~~~~-~~~~~~l~v~~~~~~~------------~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p--~~ 137 (291)
|+|.|.|.+.+..+. ......|.|...+... .........+....+.+|+.++|.|.+ .+.+ .+
T Consensus 85 D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~-~~~~~~~~ 163 (250)
T 3esu_F 85 DIGTYFCQQGNTLPWTFGGGTKLEIRRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPELVKPGASVKISCKD-SGYAFSSS 163 (250)
T ss_dssp GCEEEEEEECSSSSCEECCCEEEEEC------------------------CEECCCEEECTTCCEEEEEEC-CSTTGGGS
T ss_pred hCEEEEEEEeeCCCceECCCEEEEEECCCCcccccccccccccCcccceEEecCCceEEcCCceEEEEEEe-cCCcccCC
Confidence 999999999876543 2334456665431000 000111122344678899999999998 5655 78
Q ss_pred eeEEeEC
Q psy14540 138 TISWLKN 144 (291)
Q Consensus 138 ~~~W~~~ 144 (291)
.+.|+++
T Consensus 164 ~v~W~k~ 170 (250)
T 3esu_F 164 WMNWVKQ 170 (250)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 9999996
No 180
>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens}
Probab=99.86 E-value=4.4e-21 Score=146.61 Aligned_cols=200 Identities=15% Similarity=0.182 Sum_probs=119.2
Q ss_pred CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECC--eecC--------------CCeeEeceEEeeccceEEEEE
Q psy14540 2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDG--YPLA--------------GDRFVMGQYMSLHGDVISHVN 65 (291)
Q Consensus 2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~--~~~~--------------~~~~~~~~~~~~~~~~~~~l~ 65 (291)
.+.+...|..+.+.+|++++|.|.+.+.+.+.+.|++++ .... ...+.............++|.
T Consensus 24 ~~~v~~~p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~ 103 (279)
T 2wbj_D 24 GAVVSQHPSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLT 103 (279)
T ss_dssp CCCEEEECSEEEEETTSCEEEEEEESSSCEEEEEEEEECSSSCCEEEEEEESSSCCCCCSSSCSSSEEEEECSSSEEEEE
T ss_pred cceEEeCCCeEEecCCCeEEEEEEeCCCCCCeEEEEEeCCCCCeEEEEEEecCCcceecCCccCCcEEEEeCCCCEEEEE
Confidence 356677788899999999999999987777889999853 1110 000000001111123457899
Q ss_pred EeecCCCCCeEEEEEEeCCCC------ceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCC-ce
Q psy14540 66 ISSVRVEDSGIYQCTATNRVG------SQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPP-LT 138 (291)
Q Consensus 66 i~~~~~~d~G~y~C~~~~~~~------~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~-~~ 138 (291)
|.+++.+|+|.|+|.+.+..+ .....+.|.|......+.........+....+.+|+.++|.|.+...+|. +.
T Consensus 104 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~ 183 (279)
T 2wbj_D 104 VTSAHPEDSSFYICSARDLTSGANNEQFFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVE 183 (279)
T ss_dssp ESSCCGGGCEEEEEEEEETTCBTSCCEEECCCEEEEEESCGGGCBCCEEEEEECCHHHHHHHSCCEEEEEEEEEBSSCEE
T ss_pred EccCCccCCEEEEEEEcccccCCccceeeCCCEEEEEecCCCCCCCCEEEEECCCcccccCCCceEEEEEEeeEcCCCcE
Confidence 999999999999999987321 11234567776532100011111112222334578999999999544464 79
Q ss_pred eEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecC-CCee
Q psy14540 139 ISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTG-HSGN 217 (291)
Q Consensus 139 ~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~-~~g~ 217 (291)
+.|++++..+........ ..+..+.....|.|.. .+.|.|...... ++|.
T Consensus 184 v~W~k~g~~l~~~~~~~~---------~~~~~~~~~~~~~~~~--------------------~s~L~i~~~~~~d~~~~ 234 (279)
T 2wbj_D 184 LSWWVNGKEVHSGVSTDP---------QPLKEQPALNDSRYSL--------------------SSRLRVSATFWQNPRNH 234 (279)
T ss_dssp EEEEETTEECCTTEEECS---------SCEESSTTSTTCCEEE--------------------EEEEECCSTTTTCTTCE
T ss_pred EEEEECCEECCCCccccc---------ccccccccCCCCcEEE--------------------EEEEEEChHHhccCCCE
Confidence 999999988754321000 0011122234455544 234666665554 4678
Q ss_pred EEEEeeeCCccCC
Q psy14540 218 YTCVASNTVASDN 230 (291)
Q Consensus 218 y~C~~~~~~~~~~ 230 (291)
|+|.|.|......
T Consensus 235 YtC~v~n~~~~~~ 247 (279)
T 2wbj_D 235 FRCQVQFYGLSEN 247 (279)
T ss_dssp EEEEEEECCBCTT
T ss_pred EEEEEEeCCCCCC
Confidence 9999888765443
No 181
>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...
Probab=99.86 E-value=7.7e-21 Score=140.40 Aligned_cols=137 Identities=20% Similarity=0.273 Sum_probs=88.7
Q ss_pred eecceeeeecCCcEEEEEEecCCC--CCeeEEEECC--eecC--------------------CCeeEeceEEeeccceEE
Q psy14540 7 YKFIQQTLQPGPPVSLKCIATGNP--TPHISWKLDG--YPLA--------------------GDRFVMGQYMSLHGDVIS 62 (291)
Q Consensus 7 ~~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~--~~~~--------------------~~~~~~~~~~~~~~~~~~ 62 (291)
..|....+.+|++++|.|.+.+.+ .+.+.|+++. .... ..++... .......+
T Consensus 5 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~---~~~~~~~~ 81 (222)
T 1q9r_B 5 VESGGGLVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTIS---RDNSQSIL 81 (222)
T ss_dssp EEECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEE---EETTTTEE
T ss_pred ecCCceeEcCCCEEEEEEEecCccCCCCcEEEEEECCCCCcEEEEEEccCCcccccccCcccCCceEEE---EECCCCeE
Confidence 346667899999999999998754 6789999843 2110 0111110 01113356
Q ss_pred EEEEeecCCCCCeEEEEEEeCCCC-----ceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCc
Q psy14540 63 HVNISSVRVEDSGIYQCTATNRVG-----SQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPL 137 (291)
Q Consensus 63 ~l~i~~~~~~d~G~y~C~~~~~~~-----~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~ 137 (291)
+|+|.+++.+|+|.|.|.+.+..+ .....+.|.|...+..+ +......+ ...+.+|+.++|.|.+.+.+|.+
T Consensus 82 ~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~--P~i~~~~~-~~~~~~g~~v~L~C~~~g~~P~p 158 (222)
T 1q9r_B 82 YLQMNTLRAEDSATYYCARDHDGYYERFSYWGQGTLVTVSAAKTTP--PSVYPLAP-GSAAQTNSMVTLGCLVKGYFPEP 158 (222)
T ss_dssp EEEECSCCGGGCEEEEEEECCCSSCCSCCCBCCCEEEEECSSCCBC--CEEEEECC-CSCCCCSSEEEEEEEEEEEBSSC
T ss_pred EEEECcCCcccCeEEEEEEeccCCcccceEeCCceEEEeccCCCCC--CeEEEccc-cccccCCCcEEEEEEEccEECCC
Confidence 899999999999999999987653 22344567776532111 11111111 12356799999999995445877
Q ss_pred -eeEEeECCEecc
Q psy14540 138 -TISWLKNGLPIL 149 (291)
Q Consensus 138 -~~~W~~~~~~~~ 149 (291)
.+.|+++|..+.
T Consensus 159 ~~v~W~~~g~~~~ 171 (222)
T 1q9r_B 159 VTVTWNSGSLSSG 171 (222)
T ss_dssp CEEEEGGGTBCTT
T ss_pred CEEEEecCCeEcc
Confidence 999999987653
No 182
>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*
Probab=99.86 E-value=3.7e-21 Score=142.20 Aligned_cols=188 Identities=19% Similarity=0.270 Sum_probs=114.8
Q ss_pred ecceeeeecCCcEEEEEEecCCCCC---eeEEEECCeecC-----C------------CeeEec--eEEeeccceEEEEE
Q psy14540 8 KFIQQTLQPGPPVSLKCIATGNPTP---HISWKLDGYPLA-----G------------DRFVMG--QYMSLHGDVISHVN 65 (291)
Q Consensus 8 ~~~~~~v~~g~~v~l~C~~~~~~~~---~v~W~~~~~~~~-----~------------~~~~~~--~~~~~~~~~~~~l~ 65 (291)
.|..+.+..|++++|.|.+.+.+.+ .|.|+|++..+. . .+.... ..........++|.
T Consensus 7 vp~~V~~~~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~ 86 (225)
T 4fmk_A 7 VLPEVRGRLGGTVELPCHLLPPTTERVSQVTWQRLDGTVVAAFHPSFGVDFPNSQFSKDRLSFVRARPETNADLRDATLA 86 (225)
T ss_dssp CCSEEEEETTSCEEECCEECSSCCCEEEEEEEECTTSCEEEEEETTTEEECCCTTSCTTTEEECCCSCSCCSSCCBCCEE
T ss_pred eCCEEEEecCCCEEEEEEEECCCCCceeEEEEEECCCcceEEEecccceeeccccccccceeeeccccccccccCcEEEE
Confidence 3556788999999999999875554 489999764321 0 000000 00011122336799
Q ss_pred EeecCCCCCeEEEEEEeCCCCceee-eeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeEC
Q psy14540 66 ISSVRVEDSGIYQCTATNRVGSQTH-SADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKN 144 (291)
Q Consensus 66 i~~~~~~d~G~y~C~~~~~~~~~~~-~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~ 144 (291)
|.+++.+|+|.|+|.+.+..+.... ...+.+...+.. ...+.......++.+.+.|.+..+.|.+.+.|+++
T Consensus 87 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~c~~~~~~P~~~~~w~~~ 159 (225)
T 4fmk_A 87 FRGLRVEDEGNYTCEFATFPNGTRRGVTWLRVIAQPEN-------HAEAQEVTIGPQSVAVARCVSTGGRPPARITWISS 159 (225)
T ss_dssp ECSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCEE-------EEEECCBCCSSSCEEEEEEEEEEEBSCCEEEEECS
T ss_pred EccCCHHHCcceEEEEEeCCCcceeeeeeeeeecCCce-------eecccceeecceeeeeeeeeecCCCCCCEEEEEEC
Confidence 9999999999999999876554333 333444433311 11122234556778888888767889999999998
Q ss_pred CEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeee
Q psy14540 145 GLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASN 224 (291)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~ 224 (291)
+..+....... ....|.|.- .+.|.|.++..+|+|.|+|.|.|
T Consensus 160 ~~~~~~~~~~~-----------------~~~~~~~~~--------------------~s~L~i~~~~~~d~g~YtC~a~N 202 (225)
T 4fmk_A 160 LGGEAKDTQEP-----------------GIQAGTVTI--------------------ISRYSLVPVGRADGVKVTCRVEH 202 (225)
T ss_dssp SCCEEEEEEEE-----------------CSSTTCEEE--------------------EEEEEECCCGGGTTCEEEEEEEC
T ss_pred CccccCCcceE-----------------EecCCCEEE--------------------EEEEEEeeCCHHHCCEEEEEEEc
Confidence 76543211111 111222221 34688888888888888888888
Q ss_pred CCccCCc--eeEEEEec
Q psy14540 225 TVASDNH--SSNLRVNV 239 (291)
Q Consensus 225 ~~~~~~~--~~~l~v~~ 239 (291)
..+.... ++.|.|.+
T Consensus 203 ~~~~~~~~~~v~l~V~Y 219 (225)
T 4fmk_A 203 ESFEEPILLPVTLSVRY 219 (225)
T ss_dssp TTCSSCEEEEEECCBTT
T ss_pred CCCCeEEEEEEEEEEEE
Confidence 7765544 44455544
No 183
>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}
Probab=99.86 E-value=2.4e-20 Score=140.78 Aligned_cols=137 Identities=15% Similarity=0.286 Sum_probs=86.0
Q ss_pred eeecceeeeecCCcEEEEEEecCC--CCCeeEEEECC--eecC-----CCee---EeceEEeeccceEEEEEEeecCCCC
Q psy14540 6 IYKFIQQTLQPGPPVSLKCIATGN--PTPHISWKLDG--YPLA-----GDRF---VMGQYMSLHGDVISHVNISSVRVED 73 (291)
Q Consensus 6 ~~~~~~~~v~~g~~v~l~C~~~~~--~~~~v~W~~~~--~~~~-----~~~~---~~~~~~~~~~~~~~~l~i~~~~~~d 73 (291)
+..|....+.+|++++|.|.+.+. +.+.+.|+|.. .... .... ...+.........++|.|.+++.+|
T Consensus 6 v~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D 85 (256)
T 3ux9_B 6 LTQPPSVSGAPGQRVTISCSGSSSNIGSNYVSWYQQLPGTAPKLLIYDNNQRPSGVPDRFSGSKSGTSASLAITGLQSED 85 (256)
T ss_dssp CBCCSEEEECTTCCEEEEEECCTTTTTTSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGG
T ss_pred EecCCcEEEcCCCcEEEEEecCCCCCCCceEEEEEECCCCCCEEEEEecCCCCCCcCCcEEEEccCCEEEEEECCCChhh
Confidence 345666889999999999999875 67889999842 1110 0000 0011111122345789999999999
Q ss_pred CeEEEEEEeCCCCc---eeeeeeEEEEcCCCCCc--------------ccceeccCCcceeecCCCceEEEEEeeCCCC-
Q psy14540 74 SGIYQCTATNRVGS---QTHSADMRVYDAPGQPQ--------------DVKLVTSNSRSIKVHSGDRAGVQCLVTKGDP- 135 (291)
Q Consensus 74 ~G~y~C~~~~~~~~---~~~~~~l~v~~~~~~~~--------------~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p- 135 (291)
+|.|.|.+.+..+. ....+.|.|...+.... ..... ..+....+.+|+.++|.|.+ .+.+
T Consensus 86 sG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~G~~v~L~C~~-~~~~~ 163 (256)
T 3ux9_B 86 EADYYCQVRDNNENEWVFGGGTKLTVLGSGGSTITSYNVYYTKLSSSGSEVQL-VESGGGLVQPGGSLRLSCAA-SGFTF 163 (256)
T ss_dssp CEEEEEEEEETTTTEEEECCCEEEEEC----------------------CCEE-EEECCEEECTTCCEEEEEEE-ESSCG
T ss_pred CEEEEEEEEECCCCceEECCCEEEEEECCCCCcCccceeEEeecCCCccceeE-EcCCCeEEcCCCeEEEEEEE-eCCcc
Confidence 99999999875432 33445677765442110 00011 22233558899999999999 4545
Q ss_pred -CceeEEeEC
Q psy14540 136 -PLTISWLKN 144 (291)
Q Consensus 136 -~~~~~W~~~ 144 (291)
.+.+.|+++
T Consensus 164 ~~~~v~W~r~ 173 (256)
T 3ux9_B 164 SSYAMSWVRQ 173 (256)
T ss_dssp GGSEEEEEEE
T ss_pred cccEEEEEEE
Confidence 789999986
No 184
>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A
Probab=99.86 E-value=2.8e-20 Score=140.47 Aligned_cols=137 Identities=16% Similarity=0.254 Sum_probs=89.0
Q ss_pred cceeecceeeeecCCcEEEEEEecC--CCCCeeEEEECC--eecC-----------------CCeeEeceEEeeccceEE
Q psy14540 4 QLIYKFIQQTLQPGPPVSLKCIATG--NPTPHISWKLDG--YPLA-----------------GDRFVMGQYMSLHGDVIS 62 (291)
Q Consensus 4 ~~~~~~~~~~v~~g~~v~l~C~~~~--~~~~~v~W~~~~--~~~~-----------------~~~~~~~~~~~~~~~~~~ 62 (291)
..+..|....+.+|++++|.|.+.+ .+.+.+.|++.. .... ..++... .......+
T Consensus 10 v~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~---~~~~~~~~ 86 (257)
T 3gkz_A 10 VQLQESGPSLVKPSQTLSLTCSVTGDSVTSGYWSWIRQFPGNKLDYMGYISYRGSTYYNPSLKSRISIT---RDTSKNQV 86 (257)
T ss_dssp EEEEEECCSEECTTCCEEEEEEEEESCCSSCEEEEEEECTTSCEEEEEEEETTCCEEECTTTTTTEEEE---EEGGGTEE
T ss_pred EEEECCCCeEEcCCCcEEEEEEEEcccccceEEEEEEECCCCCcEEEEEEecCCcEEecccccccEEEE---EecCCceE
Confidence 3456677788999999999999987 347789999832 1100 0111110 11123456
Q ss_pred EEEEeecCCCCCeEEEEEEeCCCC----ceeeeeeEEEEcCCC-------CCcccceeccCCcceeecCCCceEEEEEee
Q psy14540 63 HVNISSVRVEDSGIYQCTATNRVG----SQTHSADMRVYDAPG-------QPQDVKLVTSNSRSIKVHSGDRAGVQCLVT 131 (291)
Q Consensus 63 ~l~i~~~~~~d~G~y~C~~~~~~~----~~~~~~~l~v~~~~~-------~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~ 131 (291)
+|.|.+++.+|+|.|.|.+.+..+ .....+.|.|...+. ...........+....+.+|+.++|.|.+
T Consensus 87 ~L~I~~v~~~DsG~Y~C~~~n~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~- 165 (257)
T 3gkz_A 87 YLQLKSVSSEDTATYYCSYFDSDDYAMEYWGQGTSVTVSGGGGSGGGGSGGGGSQIVLTQSPAIMSASPGEKVTLTCSA- 165 (257)
T ss_dssp EEEECSCCGGGCEEEEEEEECTTCTTCEEECCCEEEEEC---------CTTCCCCCCEECSCSEEEECTTCCEEEEEEE-
T ss_pred EEEECCCChhhCEEEEEEEecCCCcceeEEcCCEEEeecCchhhcccccCCCccceEEEcCCceEEEeCCCcEEEEEEE-
Confidence 899999999999999999987521 123445677765411 00011123344555788999999999999
Q ss_pred CCCCCc-eeEEeEC
Q psy14540 132 KGDPPL-TISWLKN 144 (291)
Q Consensus 132 ~~~p~~-~~~W~~~ 144 (291)
.+.+.+ .+.|+++
T Consensus 166 ~~~~~~~~v~W~k~ 179 (257)
T 3gkz_A 166 SSSVSSSHLYWYQQ 179 (257)
T ss_dssp SSCCCGGGEEEEEE
T ss_pred ccCccceEEEEEEE
Confidence 566766 9999984
No 185
>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}
Probab=99.86 E-value=6.9e-22 Score=153.40 Aligned_cols=175 Identities=15% Similarity=0.205 Sum_probs=122.1
Q ss_pred ecceeeeecCCcEEEEEEec-CCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCC
Q psy14540 8 KFIQQTLQPGPPVSLKCIAT-GNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVG 86 (291)
Q Consensus 8 ~~~~~~v~~g~~v~l~C~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~ 86 (291)
.+....+..|+.+.|.|... +.|.+.+.|++++..+........ .......+.|.|.++...|.|.|+|.+.+..+
T Consensus 120 ~~~~~~~~~~~~~~l~C~~~~g~P~~~i~W~~~~~~~~~~~~~~~---~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~ 196 (308)
T 4fom_A 120 GPDSLIDGGNETVAAICIAATGKPVAHIDWEGDLGEMESTTTSFP---NETATIISQYKLFPTRFARGRRITCVVKHPAL 196 (308)
T ss_dssp CSSCCCTTCSCEEEEEEEEEEEBSCCEEEECCCSSBCCEEEEECT---TSCEEEEEEEEECCCGGGTTCEEEEEEECTTC
T ss_pred ccceeEEcCCceEEEEEEecCCcCCceEEEEECCcccccccceee---eecccccccceEEeeeecCCccEEEEEEccCC
Confidence 34445566789999999864 588999999999987763222111 11122346799999999999999999998776
Q ss_pred ceeee--eeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCc-eeEEeECCEeccCCCceEEeccCCce
Q psy14540 87 SQTHS--ADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPL-TISWLKNGLPILSDAEITIRSSGEYT 163 (291)
Q Consensus 87 ~~~~~--~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~ 163 (291)
..... +.|.|...| ...........+..|+.++|.|.+ .|.|.+ .+.|++++..+...... ...
T Consensus 197 ~~~~~~~~~l~V~~~P------~~~~~~~~~~~~~~g~~v~l~C~~-~g~P~p~~v~W~k~~~~~~~~~~~------~~~ 263 (308)
T 4fom_A 197 EKDIRYSFILDIQYAP------EVSVTGYDGNWFVGRKGVNLKCNA-DANPPPFKSVWSRLDGQWPDGLLA------SDN 263 (308)
T ss_dssp SSCEEEEEECCCCEEE------EECCBCCCSCEETTCCSCEEECCE-EEESCEEEEECCBSSSCCCSSCBC------STT
T ss_pred CCceEEeEEEEEecCC------eeEEcccceeeeeccccEEEEEEE-ecCCCCcEEEEEECCeECCCcEEE------cCC
Confidence 54443 344443332 111223334566788999999999 688877 69999998877543211 123
Q ss_pred EEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEE
Q psy14540 164 SSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRV 198 (291)
Q Consensus 164 ~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~ 198 (291)
..+.|..+..+|+|.|+|.|.|..|.....+.|.+
T Consensus 264 ~~l~i~~v~~~d~G~Y~C~A~N~~G~~~~~~~l~V 298 (308)
T 4fom_A 264 TLHFVHPLTFNYSGVYICKVTNSLGQRSDQKVIYI 298 (308)
T ss_dssp EEECCSCCCSCCCSEEEEEEEETTEEEEEEEECCE
T ss_pred eEEEECCCChhhCEEEEEEEEeCCCcEEEEEEEEE
Confidence 45778889999999999999999987666555443
No 186
>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1
Probab=99.86 E-value=4.8e-20 Score=141.01 Aligned_cols=134 Identities=16% Similarity=0.346 Sum_probs=88.6
Q ss_pred ceeecceeeeecCCcEEEEEEecCCC--CCeeEEEECC--eecC------------------CCeeEeceEEeeccceEE
Q psy14540 5 LIYKFIQQTLQPGPPVSLKCIATGNP--TPHISWKLDG--YPLA------------------GDRFVMGQYMSLHGDVIS 62 (291)
Q Consensus 5 ~~~~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~--~~~~------------------~~~~~~~~~~~~~~~~~~ 62 (291)
+...|....+.+|++++|.|.+.+.+ .+.+.|++++ ..+. ..++.. ........+
T Consensus 29 ~~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~---~~~~~~~~~ 105 (282)
T 1qok_A 29 KLQQSGAELVRSGTSVKLSCTASGFNIKDSYMHWLRQGPEQGLEWIGWIDPENGDTEYAPKFQGKATF---TTDTSSNTA 105 (282)
T ss_dssp EEEECCCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGBTTEEE---EEETTTTEE
T ss_pred EEECCCCEEEeCCCeEEEEEeccCCCCCCceEEEEEeCCCCCcEEEEEEecCCCccccCchhcCcEEE---EEecCCCeE
Confidence 35667788999999999999998754 5789999953 1110 011111 001123457
Q ss_pred EEEEeecCCCCCeEEEEEEeCCCC---c--eeeeeeEEEEcCCCCC--------cccceeccCCcceeecCCCceEEEEE
Q psy14540 63 HVNISSVRVEDSGIYQCTATNRVG---S--QTHSADMRVYDAPGQP--------QDVKLVTSNSRSIKVHSGDRAGVQCL 129 (291)
Q Consensus 63 ~l~i~~~~~~d~G~y~C~~~~~~~---~--~~~~~~l~v~~~~~~~--------~~~~~~~~~~~~~~~~~g~~~~l~C~ 129 (291)
+|.|.+++.+|+|.|.|.+.+..+ . ....+.|.|...+... .........+....+.+|+.++|.|.
T Consensus 106 sL~I~~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~ 185 (282)
T 1qok_A 106 YLQLSSLTSEDTAVYYCNEGTPTGPYYFDYWGQGTTVTVSSGGGGSGGGGSGGGGSENVLTQSPAIMSASPGEKVTITCS 185 (282)
T ss_dssp EEEECSCCGGGCEEEEEEEECSSSSCCCEEECCCEEEEEEC---------------CCCEEEECSEEEECTTCCEEEEEE
T ss_pred EEEECcCChhhCEEEEEEeccCCCccceeeeCCCEEEEEecCCcccCCccCCCCccceEEecCCCEEEEcCCCcEEEEEE
Confidence 899999999999999999997754 1 2234567777654200 00111222344567889999999999
Q ss_pred eeCCCCCceeEEeE
Q psy14540 130 VTKGDPPLTISWLK 143 (291)
Q Consensus 130 ~~~~~p~~~~~W~~ 143 (291)
+ .+.+ +.+.|++
T Consensus 186 ~-~~~~-~~v~W~k 197 (282)
T 1qok_A 186 A-SSSV-SYMHWFQ 197 (282)
T ss_dssp E-SSCC-SCCEEEE
T ss_pred e-cCCC-ceEEEEE
Confidence 9 6777 8999999
No 187
>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C
Probab=99.85 E-value=7.3e-20 Score=138.59 Aligned_cols=137 Identities=18% Similarity=0.275 Sum_probs=91.8
Q ss_pred CCcceeecceeeeecCCcEEEEEEecCCC------CCeeEEEEC--CeecC-------------CCeeEeceEEeeccce
Q psy14540 2 HPQLIYKFIQQTLQPGPPVSLKCIATGNP------TPHISWKLD--GYPLA-------------GDRFVMGQYMSLHGDV 60 (291)
Q Consensus 2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~------~~~v~W~~~--~~~~~-------------~~~~~~~~~~~~~~~~ 60 (291)
.+.+...|..+.+.+|++++|.|.+.+.+ .+.+.|+++ +..+. ..++.. .....
T Consensus 5 ~~~v~q~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~R~~~-----~~~~~ 79 (264)
T 2gjj_A 5 DIVLTQTPSSLPVSVGEKVTMTCKSSQTLLYSNNQKNYLAWYQQKPGQSPKLLISWAFTRKSGVPDRFTG-----SGSGT 79 (264)
T ss_dssp CCCEEEECSEEEEETTCCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEE-----EEETT
T ss_pred ccceEecCCeEEecCCCcEEEEeEcCCcccccccCCceEEEEEECCCCCcEEEEEecccCCCCCCccEEE-----ecCCC
Confidence 46778888889999999999999998766 678999984 22111 112211 11234
Q ss_pred EEEEEEeecCCCCCeEEEEEEeCCCCc-eeeeeeEEEEcCCC-------------CCcccceeccCCcceeecCCCceEE
Q psy14540 61 ISHVNISSVRVEDSGIYQCTATNRVGS-QTHSADMRVYDAPG-------------QPQDVKLVTSNSRSIKVHSGDRAGV 126 (291)
Q Consensus 61 ~~~l~i~~~~~~d~G~y~C~~~~~~~~-~~~~~~l~v~~~~~-------------~~~~~~~~~~~~~~~~~~~g~~~~l 126 (291)
.++|.|.+++.+|+|.|.|.+.+..+. ....+.|.|...+. .+........ +....+.+|+.++|
T Consensus 80 ~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~G~~v~L 158 (264)
T 2gjj_A 80 DFTLTIGSVKAEDLAVYYCQQYSNYPWTFGGGTRLEIKRGGGGSGGGGSGGGGSGGGGSEVQLQQ-SGPEVVKTGASVKI 158 (264)
T ss_dssp EEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEECC-------------------CCEEEE-CCCEEECTTCCEEE
T ss_pred EEEEEECCCCHHHCEEEEEEEecCCccEecCCEEEEEEcCCcccccccccccccccccCcEEEeC-CCCEEEcCCCcEEE
Confidence 578999999999999999999876432 23345777876531 0001111112 22346889999999
Q ss_pred EEEeeCCCC--CceeEEeECC
Q psy14540 127 QCLVTKGDP--PLTISWLKNG 145 (291)
Q Consensus 127 ~C~~~~~~p--~~~~~W~~~~ 145 (291)
.|.+. +.+ .+.+.|+++.
T Consensus 159 ~C~~~-~~~~~~~~v~W~r~~ 178 (264)
T 2gjj_A 159 SCKAS-GYSFTGYFINWVKKN 178 (264)
T ss_dssp EEEEE-SSCGGGSEEEEEEEC
T ss_pred EEEEe-CCccCCeEEEEEEEC
Confidence 99994 554 3799999963
No 188
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative splicing, cell adhesion, cell membrane, glycoprotein, HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3uro_R 3epc_R* 3epd_R* 3epf_R*
Probab=99.85 E-value=3.7e-21 Score=142.05 Aligned_cols=132 Identities=23% Similarity=0.330 Sum_probs=87.0
Q ss_pred ecceeeeecCCcEEEEEEecC-CCCC----eeEEEECCeecCCCeeE------e---ceEEeec-----cceEEEEEEee
Q psy14540 8 KFIQQTLQPGPPVSLKCIATG-NPTP----HISWKLDGYPLAGDRFV------M---GQYMSLH-----GDVISHVNISS 68 (291)
Q Consensus 8 ~~~~~~v~~g~~v~l~C~~~~-~~~~----~v~W~~~~~~~~~~~~~------~---~~~~~~~-----~~~~~~l~i~~ 68 (291)
.|....+.+|++++|.|.+.+ .+.+ .+.|++++.......+. . .+..... .....+|.|.+
T Consensus 5 ~p~~v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~I~~ 84 (221)
T 3eow_R 5 APTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRDASLRMFG 84 (221)
T ss_dssp CCCCCCCCCSSCCEEECCCCCCSSSCCCEEEEEECBSSSCSSCCCEEESSSEEECSCSSCEEESSCSSCCCCCCEEECCC
T ss_pred CCCcEEEEeCCCEEEEeeeccCCCCCccceEEEEEeCCCCceEEEEECCCCCCcCCCCcEEEecccCCCCCCCceEEEcc
Confidence 356678899999999999854 3333 49999986532210000 0 0000011 11345799999
Q ss_pred cCCCCCeEEEEEEeCCC-CceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceE-EEEEeeCCCCCceeEEeECCE
Q psy14540 69 VRVEDSGIYQCTATNRV-GSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAG-VQCLVTKGDPPLTISWLKNGL 146 (291)
Q Consensus 69 ~~~~d~G~y~C~~~~~~-~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-l~C~~~~~~p~~~~~W~~~~~ 146 (291)
++.+|+|.|+|.+.+.. +.....+.|.|...|..+ ... .. .. .+|+.+. |.|.+..+.|.+.+.|++++.
T Consensus 85 v~~~D~G~Y~C~~~~~~~~~~~~~~~L~V~~~P~~~---~~~---~~-~~-~~g~~~~~l~C~~~~g~P~p~v~W~k~~~ 156 (221)
T 3eow_R 85 LRVEDEGSYTCLFVTFPQGSRSVDIWLRVLAKPQNT---AEV---QK-VQ-LTGEPVPMARCVSTGGRPPAQITWHSDLG 156 (221)
T ss_dssp SSCCCCSCBEEEEEESSSCSCEEECCCCCCCCCEEE---EEE---EC-CC-CCSSSCCEEEEEEESCSSCCCEEEECSSS
T ss_pred CChHHCeEEEEEEEeCCCCceEEEEEEEEEECCCce---eec---CC-cc-cCCceEEEEEEECCCccCCCeeEEEeCCC
Confidence 99999999999998765 666777777777644211 111 11 11 5788885 999986799999999998754
Q ss_pred e
Q psy14540 147 P 147 (291)
Q Consensus 147 ~ 147 (291)
.
T Consensus 157 ~ 157 (221)
T 3eow_R 157 G 157 (221)
T ss_dssp C
T ss_pred C
Confidence 3
No 189
>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...
Probab=99.85 E-value=8.7e-21 Score=138.89 Aligned_cols=135 Identities=20% Similarity=0.283 Sum_probs=87.7
Q ss_pred eecceeeeecCCcEEEEEEecCCC--CCeeEEEEC--CeecC-----------------CCeeEeceEEeeccceEEEEE
Q psy14540 7 YKFIQQTLQPGPPVSLKCIATGNP--TPHISWKLD--GYPLA-----------------GDRFVMGQYMSLHGDVISHVN 65 (291)
Q Consensus 7 ~~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~--~~~~~-----------------~~~~~~~~~~~~~~~~~~~l~ 65 (291)
..|....+.+|++++|.|.+.+.+ .+.+.|+|+ +.... ..++... .......++|.
T Consensus 5 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~---~~~~~~~~~L~ 81 (210)
T 3d9a_H 5 QESGPSLVKPSQTLSLTCSVTGDSITSDYWSWIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISIT---RDTSKNQYYLD 81 (210)
T ss_dssp EEESCSEECTTSCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCEEECGGGTTTEEEE---EEGGGTEEEEE
T ss_pred ecCCCEEecCCCcEEEEEEEecccCCCCcEEEEEeCCCCCcEEEEEEcCCCCeEECcccCceEEEE---ecCCCCEEEEE
Confidence 346777899999999999998754 478999985 22110 1111110 01122356899
Q ss_pred EeecCCCCCeEEEEEEeCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCc-eeEEeEC
Q psy14540 66 ISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPL-TISWLKN 144 (291)
Q Consensus 66 i~~~~~~d~G~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~~ 144 (291)
|.+++.+|+|.|.|.+.+.. .......|.|...+..+ ....... ....+.+|+.++|.|.+.+.+|.+ .+.|+++
T Consensus 82 I~~v~~~D~G~Y~C~~~~~~-~~~~~~~l~V~~~~~~~--P~v~~~~-~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~ 157 (210)
T 3d9a_H 82 LNSVTTEDTATYYCANWDGD-YWGQGTLVTVSAAKTTP--PSVYPLA-PGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSG 157 (210)
T ss_dssp ECSCCGGGCEEEEEEETTSS-CBCCCEEEEECCCCCBC--CEEEEEC-CTTSCCCSSEEEEEEEEEEEBSSCCEEEEGGG
T ss_pred ECCCCcccCEEEEEEEecCc-ccccceEEEeccCCCCC--CEEEEec-CCcccccCCcEEEEEEEeeEecCCcEEEEeeC
Confidence 99999999999999998753 22334566776422111 1111111 123456899999999995445877 9999998
Q ss_pred CEec
Q psy14540 145 GLPI 148 (291)
Q Consensus 145 ~~~~ 148 (291)
+..+
T Consensus 158 ~~~~ 161 (210)
T 3d9a_H 158 SLSS 161 (210)
T ss_dssp TBCT
T ss_pred Cccc
Confidence 8754
No 190
>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A
Probab=99.85 E-value=2.4e-21 Score=141.45 Aligned_cols=185 Identities=14% Similarity=0.236 Sum_probs=108.9
Q ss_pred Ccc-eeecceee-eecCCcEEEEEEecCCC----CCeeEEEECCeecCCCeeEeceEEeecc--ceEEEEEEeecCCCCC
Q psy14540 3 PQL-IYKFIQQT-LQPGPPVSLKCIATGNP----TPHISWKLDGYPLAGDRFVMGQYMSLHG--DVISHVNISSVRVEDS 74 (291)
Q Consensus 3 p~~-~~~~~~~~-v~~g~~v~l~C~~~~~~----~~~v~W~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~ 74 (291)
|.+ +..|.... +.+|++++|.|.+.+.+ ...|.|++++..+.......... ...+ ...+.|.|.+++.+|+
T Consensus 2 p~v~~~~P~~~~~v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~-~~~~~~~~~~~L~I~~~~~~D~ 80 (207)
T 2vol_A 2 SSVFIFPPKPKDVLTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTKPREE-QFNSTFRSVSELPIMHQDWLNG 80 (207)
T ss_dssp CEEEEECCCHHHHHSTTSCCEEEEEEEEECTTCCCCEEEEEETTEEECCCEEECCCE-ETTTEEEEEEEEECCHHHHHTT
T ss_pred CcEEEeCcChhhhhccCCceEEEEEEeCcccCCCceEEEEEECCccccccccCCCcC-cCCCcEEEEEEEEEehhHcCCC
Confidence 444 44455444 89999999999998753 34899999987665321111100 0001 1235799999999999
Q ss_pred eEEEEEEeCCCCceeeeeeEEEE-cCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCC-ceeEEeECCEeccCCC
Q psy14540 75 GIYQCTATNRVGSQTHSADMRVY-DAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPP-LTISWLKNGLPILSDA 152 (291)
Q Consensus 75 G~y~C~~~~~~~~~~~~~~l~v~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~-~~~~W~~~~~~~~~~~ 152 (291)
|.|+|.+.+..+.......+.+. .....| .... ..... ....|+.++|.|.+.+.+|. +.+.|+++|..+....
T Consensus 81 G~Y~C~a~~~~~~~~~~~~v~~~~~~~~~P--~v~~-~~~~~-~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~ 156 (207)
T 2vol_A 81 KEFKCRVNSAAFPAPIEKTISKTKGRPKAP--QVYT-LPPPK-EQMAKDKVSLTCMITDFFPEDITVEWESNGQPAENYK 156 (207)
T ss_dssp CCEEEEEECTTCSSCEEEEECCCCCCCBCC--EEEE-ECCCT-GGGSSSEEEEEEEEEEEBSSCCEEEEEETTEECSCEE
T ss_pred CEEEEEEEccCCCCceEEEeccCCCCCcCC--eEEE-eCCCH-HHhcCCceEEEEEEeeEECCCCEEEEEECCEeccCcc
Confidence 99999999877643222222110 111111 1111 11111 12358999999999544665 4999999998864211
Q ss_pred ceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCc
Q psy14540 153 EITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVA 227 (291)
Q Consensus 153 ~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~ 227 (291)
.. .......|.|.. .+.|.+.....+|.|.|+|.|.|...
T Consensus 157 ~~---------------~~~~~~~g~~~~--------------------~s~l~i~~~~~~~~g~ytC~a~n~~l 196 (207)
T 2vol_A 157 NT---------------QPIMDTDGSYFV--------------------YSKLNVQKSNWEAGNTFTCSVLHEGL 196 (207)
T ss_dssp EC---------------CCEECTTSCEEE--------------------EEEEEEEHHHHSSCCEEEEEEECTTS
T ss_pred cC---------------CceECCCCCEEE--------------------EEEEEECHHHcCCCCEEEEEEECCCC
Confidence 00 000122334432 23456666666778888888888763
No 191
>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D
Probab=99.85 E-value=6.1e-20 Score=138.56 Aligned_cols=206 Identities=17% Similarity=0.268 Sum_probs=117.9
Q ss_pred eeecceeeeecCCcEEEEEEecCCC--CCeeEEEECC--eecC------------------CCeeEeceEEeeccceEEE
Q psy14540 6 IYKFIQQTLQPGPPVSLKCIATGNP--TPHISWKLDG--YPLA------------------GDRFVMGQYMSLHGDVISH 63 (291)
Q Consensus 6 ~~~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~--~~~~------------------~~~~~~~~~~~~~~~~~~~ 63 (291)
+..+....+.+|++++|.|.+.+.+ .+.+.|++.. ..+. ..++.. ........++
T Consensus 6 v~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~---~~~~~~~~~~ 82 (256)
T 3umt_A 6 LQQSGLELVKPGASVKISCKTSGYTFTEYTMHWVKQSHGKSLEWIGGINPNNGGTSYNQKFKGKAIL---TVDKSSSTAY 82 (256)
T ss_dssp EEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEE---EEEGGGTEEE
T ss_pred EEccCceEEcCCCCEEEEEEEecccccccEEEEEEECCCCCcEEEEEEeccCCcccccccccceEEE---EEecCCCEEE
Confidence 3445567799999999999998755 6789999832 1110 011111 0111234577
Q ss_pred EEEeecCCCCCeEEEEEEeCC----CCceeeeeeEEEEcCCC---------CCcccceeccCCcceeecCCCceEEEEEe
Q psy14540 64 VNISSVRVEDSGIYQCTATNR----VGSQTHSADMRVYDAPG---------QPQDVKLVTSNSRSIKVHSGDRAGVQCLV 130 (291)
Q Consensus 64 l~i~~~~~~d~G~y~C~~~~~----~~~~~~~~~l~v~~~~~---------~~~~~~~~~~~~~~~~~~~g~~~~l~C~~ 130 (291)
|.|.+++.+|+|.|.|.+.+. .+.....+.|.|...+. ...........+....+.+|+.++|.|.+
T Consensus 83 L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~ 162 (256)
T 3umt_A 83 LELRSLTSEDSAVYYCARDDRYPAWFAYWGQGTTVTVSSGGGGSGGGGSGGGGSTDIQLTQSPSSLSASLGERVSITCRA 162 (256)
T ss_dssp EEECSCCGGGCEEEEEEECCSTTCCSCEECCCEEEEECC---------------CCCCEEEECSEEEECTTCCEEEEEEE
T ss_pred EEECCCCcccCEEEEEEEccCCCccccEECCCEEEEEcCCCccccCcccCCCCccccEEEcCCCeEEEECCCCEEEEEEE
Confidence 999999999999999999876 23334456677765311 00001122233455788899999999999
Q ss_pred eCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeee
Q psy14540 131 TKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATL 210 (291)
Q Consensus 131 ~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~ 210 (291)
.+.|.+.+.|+++.... ... +.+..... ........+.+........|.|.++
T Consensus 163 -~~~~~~~v~W~k~~~~~----~~~----------~~~~~~~~------------~~~~~~~r~~~~~~~~~~~L~I~~v 215 (256)
T 3umt_A 163 -SQDIGSNLNWLQQKPDG----TIK----------RLIYATSS------------LDSGVPKRFSGSRSGSDYSLTISSL 215 (256)
T ss_dssp -SSCCTTCEEEEEECTTC----CEE----------EEEETTTE------------ECTTSCTTEEEEEETTEEEEEECSC
T ss_pred -ecCCCcEEEEEEECCCC----CcE----------EEEEeccc------------cCCccCCCEEEecCCCEEEEEECCC
Confidence 67777899999843100 000 00000000 0000001112222334567888888
Q ss_pred ecCCCeeEEEEeeeCCc-cCCceeEEEEecCC
Q psy14540 211 STGHSGNYTCVASNTVA-SDNHSSNLRVNVPP 241 (291)
Q Consensus 211 ~~~~~g~y~C~~~~~~~-~~~~~~~l~v~~~p 241 (291)
..+|+|.|.|.+.+... .-.....|.|..++
T Consensus 216 ~~~D~G~Y~C~~~~~~~~~fg~gt~L~V~~~~ 247 (256)
T 3umt_A 216 ESEDFVDYYCLQYASSPPTFGGGTKLEIKRAA 247 (256)
T ss_dssp CGGGCSEEEEEECSSSSCEECCCEEEEEC---
T ss_pred ChhHCEEEEEEEeeCCCcEECCCEEEEEECCC
Confidence 88888888888877542 23344566666543
No 192
>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}
Probab=99.85 E-value=2e-21 Score=142.96 Aligned_cols=142 Identities=14% Similarity=0.176 Sum_probs=89.5
Q ss_pred CCcceeecceee--eecCCcEEEEEEecCC---C-CCeeEEEECCeecCCCeeEeceEEeecc---ceEEEEEEeecCCC
Q psy14540 2 HPQLIYKFIQQT--LQPGPPVSLKCIATGN---P-TPHISWKLDGYPLAGDRFVMGQYMSLHG---DVISHVNISSVRVE 72 (291)
Q Consensus 2 ~p~~~~~~~~~~--v~~g~~v~l~C~~~~~---~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~i~~~~~~ 72 (291)
+|.+.+.|.... +.+|++++|.|.+.+. + .+.|.|+|++..+....... .....+ ...+.|.|.+++.+
T Consensus 9 ~p~v~~~pp~~~~~v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~--~~~~~~~~~~~~~~L~I~~~~~~ 86 (218)
T 2rgs_A 9 GPSVFIFPPNIKDVLMISLTPKVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQT--HREDYNSTIRVVSTLPIQHQDWM 86 (218)
T ss_dssp CCEEEEECCCHHHHHCTTSCCEEEEEEEEECTTSCCEEEEEEETTEEECCCEEEE--EEETTTTEEEEEEEEECCHHHHH
T ss_pred CCEEEEECcCHHHhhccCCCeeEEEEEcCCccCCCceEEEEEECCccccCccccc--ccccCCCeEEEEEEEEEcHHHcC
Confidence 566766665555 8899999999999875 3 37899999998765322111 000111 13467999999999
Q ss_pred CCeEEEEEEeCCCCceeeeeeEEE-EcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCc-eeEEeECCEecc
Q psy14540 73 DSGIYQCTATNRVGSQTHSADMRV-YDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPL-TISWLKNGLPIL 149 (291)
Q Consensus 73 d~G~y~C~~~~~~~~~~~~~~l~v-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~~~~~~~ 149 (291)
|+|.|+|.+.+..+.......+.. ......| ........... .+|+.++|.|.+.+.+|.+ .+.|+++|..+.
T Consensus 87 D~g~Y~C~~~~~~~~~~~~~~v~~~~~~~~~P---~v~~~~~~~~~-~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~~~ 161 (218)
T 2rgs_A 87 SGKEFKCKVNNKDLPSPIERTISKIKGLVRAP---QVYILPPPAEQ-LSRKDVSLTCLVVGFNPGDISVEWTSNGHTEE 161 (218)
T ss_dssp TTCCEEEEEEETTCSSCEEEEECCCCCCCBCC---EEEEECCCGGG-TTSSEEEEEEEEEEEBSSCCEEEEEETTEEEC
T ss_pred CCCeEEEEEECCcCCCcceEEEeecCCCCCCC---EEEEECCChHH-hcCCceEEEEEEEeeeCCCcEEEEEECCEecc
Confidence 999999999987654311111111 1111111 11111112122 3599999999995446765 999999998763
No 193
>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}
Probab=99.85 E-value=1e-20 Score=148.07 Aligned_cols=133 Identities=19% Similarity=0.251 Sum_probs=83.5
Q ss_pred eeeeecCCcEEEEEEecCCCCC--eeEEEECCeecCCCeeEeceE-EeeccceEEEEEEeecCCCCCeEEEEEEeCCCCc
Q psy14540 11 QQTLQPGPPVSLKCIATGNPTP--HISWKLDGYPLAGDRFVMGQY-MSLHGDVISHVNISSVRVEDSGIYQCTATNRVGS 87 (291)
Q Consensus 11 ~~~v~~g~~v~l~C~~~~~~~~--~v~W~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~ 87 (291)
...+.+|+.+.|.|.+.+.+.+ .+.|+++|..+.......... ........+.|.|.....+|.|.|+|.+.+..+.
T Consensus 126 ~~~~~~g~~~~l~C~~~g~p~~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~d~~g~Y~C~a~n~~~~ 205 (327)
T 2wng_A 126 AARATPQHTVSFTCESHGFSPRDITLKWFKNGNELSDFQTNVDPVGESVSYSIHSTAKVVLTREDVHSQVICEVAHVTLQ 205 (327)
T ss_dssp SSCBCTTCEEEEEEEEEEEBSSCCEEEEEETTEECCCEEEEEECSSCCSCEEEEEEEEEECCTTGGGCEEEEEEECTTSC
T ss_pred ccccCCCCEEEEEEEEeCccCCCcEEEEEECCEEccccccccccccCCCceEEEEEEEEechhcCcCceEEEEEeccccC
Confidence 3568899999999999885544 899999999887433211100 0001112356888877777789999999987665
Q ss_pred e---eeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCc-eeEEeECCEeccC
Q psy14540 88 Q---THSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPL-TISWLKNGLPILS 150 (291)
Q Consensus 88 ~---~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~~~~~~~~ 150 (291)
. .....+.+.. ...|. ... . + ..+.+|+.++|.|.+...+|.+ .+.|+++|..+..
T Consensus 206 ~~~~~~~~~~~~~v-~~~P~--i~~-~-~--~~~~~G~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~ 265 (327)
T 2wng_A 206 GDPLRGTANLSETI-RVPPT--LEV-T-Q--QPVRAENQVNVTCQVRKFYPQRLQLTWLENGNVSRT 265 (327)
T ss_dssp SCCEEEEEEGGGTB-CBCCE--EEE-E-E--ECCSSTTCCEEEEEEEEEBSSCEEEEEEETTEEEEE
T ss_pred CCcccceEEecccc-CCCCE--EEE-e-c--CCcCCCCcEEEEEEEccccCCCcEEEEEECCeEccC
Confidence 2 2222221111 11111 111 1 1 1167899999999995324544 8999999988753
No 194
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}
Probab=99.85 E-value=2.5e-21 Score=152.23 Aligned_cols=130 Identities=26% Similarity=0.450 Sum_probs=96.3
Q ss_pred eeeecCCcEEEEEE-----ecCCCCCeeEEEECCeecCCC--eeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCC
Q psy14540 12 QTLQPGPPVSLKCI-----ATGNPTPHISWKLDGYPLAGD--RFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNR 84 (291)
Q Consensus 12 ~~v~~g~~v~l~C~-----~~~~~~~~v~W~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~ 84 (291)
..+.+|+.+.|.|. +.+.|.+.+.|++++..+... ++.. ..+. ..|.|.+++..|+|.|+|.+.+.
T Consensus 130 ~~~~~g~~v~l~C~~~~~~~~g~p~~~v~W~k~g~~~~~~~~~~~~-----~~~~--~~L~i~~v~~~d~G~Y~C~a~n~ 202 (339)
T 3o4o_C 130 QILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLS-----VRGT--THLLVHDVALEDAGYYRCVLTFA 202 (339)
T ss_dssp EEEETTSCEEEECCSCTTTCCSSSCCCBCCEESSCBCCTTCSSEEE-----CTTS--SEEEESSCCGGGCEEEEEEEECC
T ss_pred eEEECCCCEEEEecCCcccccCCCCceEEEecCCeeCCCCCceeEE-----cCCc--ceEEEcccCHhhCeEEEEEEEEC
Confidence 46899999999999 677888999999999887632 2221 1111 36999999999999999999987
Q ss_pred CC----ceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEee--CCCC-CceeEEeECCEeccC
Q psy14540 85 VG----SQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVT--KGDP-PLTISWLKNGLPILS 150 (291)
Q Consensus 85 ~~----~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~--~~~p-~~~~~W~~~~~~~~~ 150 (291)
.+ .....+.|.|...+.... ......+....+.+|+.+.|.|.+. .+.| .+.+.|++++..+..
T Consensus 203 ~g~~~~~~~~~~~l~V~~~~~~~~--P~i~~~~~~~~v~~G~~v~L~C~~~~~~g~P~~~~v~W~~~g~~~~~ 273 (339)
T 3o4o_C 203 HEGQQYNITRSIELRIKKKKEETI--PVIISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIES 273 (339)
T ss_dssp BTTBCCEEEEEEEEEEECCCCCCC--CEECCCSCCCCCCCCSCCCCCCCEEESSSCCSSCEEEEESSSSCSSS
T ss_pred CCCeEEEEEEEEEEEEEcCCCCCC--CEEecCCceeEeccCCCEEEEEEEECCCCCCCCceEEEEECCeeccc
Confidence 66 346677788876542111 1222335556788999999999983 4777 889999999887643
No 195
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}
Probab=99.85 E-value=1.7e-20 Score=144.34 Aligned_cols=186 Identities=20% Similarity=0.250 Sum_probs=117.6
Q ss_pred ceeecceeeeecCCcEEEEEEecCCCC--CeeEEEEC-CeecCC-CeeEeceEEeeccceEEEEEEeecCCCCCeEEEEE
Q psy14540 5 LIYKFIQQTLQPGPPVSLKCIATGNPT--PHISWKLD-GYPLAG-DRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCT 80 (291)
Q Consensus 5 ~~~~~~~~~v~~g~~v~l~C~~~~~~~--~~v~W~~~-~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~ 80 (291)
+...+....+.+|+.+.|.|.+.+ +. +.+.|+++ +..+.. ..+... .. ..|.|.+++..|+|.|+|.
T Consensus 92 ~~~~~~~~~v~~g~~v~l~C~~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~-----~~---~~L~i~~~~~~d~G~Y~C~ 162 (292)
T 4dkd_C 92 WNVLAQEVVVFEDQDALLPCLLTD-PVLEAGVSLVRVRGRPLMRHTNYSFS-----PW---HGFTIHRAKFIQSQDYQCS 162 (292)
T ss_dssp EEESCSEEEEETTSCEECCEEESS-GGGGSSEEEEEGGGCCCCSSCCEECC-----SS---SCCEETTCCGGGCSEEEEE
T ss_pred ccccCCeEEEcCCCcEEEeeeCCC-CCcceeEEEEecCCCccccCCccccc-----CC---ceEEECCCCHHHCeEEEEE
Confidence 345566778999999999999987 43 68999997 444442 222211 11 1288999999999999999
Q ss_pred EeCCCCce-eeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEecc
Q psy14540 81 ATNRVGSQ-THSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSS 159 (291)
Q Consensus 81 ~~~~~~~~-~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~ 159 (291)
+.+..+.. +..+.|.|......++ .....+....+.+|+.+.|.|.+....+.+.+.|++++..+...........
T Consensus 163 a~n~~~~~~s~~~~l~V~~~~~~~p---~i~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 239 (292)
T 4dkd_C 163 ALMGGRKVMSISIRLKVQKVIPGPP---ALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDFHNN 239 (292)
T ss_dssp ECSTTSCEECCCEEEEEECCCCSSC---EEEEESSCBCCCSSSCEEEEEEEEESSSCCEEECCBSSCCCCCCBEEEEETT
T ss_pred EEeCCCceeEEEEEEEEeCCCCCCC---eEEccCCceeEecCCCEEEEEEecCCCCceEEEEeCCCcccccCccceeccc
Confidence 99776644 4477788876332111 1122233445679999999999964344567888898876644332221111
Q ss_pred CCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEec
Q psy14540 160 GEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNV 239 (291)
Q Consensus 160 ~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~ 239 (291)
. |. ....|.|.++..+|+|.|+|.|.|..|..+.++.|.|..
T Consensus 240 ~------------------~~--------------------~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~ 281 (292)
T 4dkd_C 240 R------------------YQ--------------------KVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVVE 281 (292)
T ss_dssp E------------------EE--------------------EEEEEEESSCCTTSCEEEEEEEECSSCEEEEEEEECC--
T ss_pred e------------------ee--------------------eEEEEEECccChhcCeEEEEEEecCCCCceeEEEEEEee
Confidence 0 00 123566666666666666666766666666666666655
Q ss_pred C
Q psy14540 240 P 240 (291)
Q Consensus 240 ~ 240 (291)
.
T Consensus 282 ~ 282 (292)
T 4dkd_C 282 S 282 (292)
T ss_dssp -
T ss_pred C
Confidence 4
No 196
>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B
Probab=99.84 E-value=1.2e-20 Score=133.11 Aligned_cols=153 Identities=17% Similarity=0.175 Sum_probs=100.5
Q ss_pred ceeeeecCCcEEEEEEecCCCCCeeEEEECCeecC---CCeeEe----ceEEeeccceEEEEEEeecCCCCCeEEEEEEe
Q psy14540 10 IQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLA---GDRFVM----GQYMSLHGDVISHVNISSVRVEDSGIYQCTAT 82 (291)
Q Consensus 10 ~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~---~~~~~~----~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~ 82 (291)
..+.+.+|++|+|.|.+. .+.+.|.|++++..+. ...... ..+... .....+|.|.+++..|+|.|+|.+.
T Consensus 3 ~~v~~~~G~~VtL~c~~~-~~~~~i~W~~~~~~i~~~~~~~~~~~~~~~~R~~~-~~~~~sL~I~~v~~~DsG~Y~C~~~ 80 (171)
T 1ccz_A 3 QQIYGVVYGNVTFHVPSN-VPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYL-DTVSGSLTIYNLTSSDEDEYEMESP 80 (171)
T ss_dssp EEEEEETTCCEEECCCCS-SCCSCEEEEETTEEEEEEETTEEEECGGGTTSEEE-CTTTCCEEECSCCGGGCEEEEEECT
T ss_pred cEEEEEcCCCEEEcCCCC-CCcceEEEEeCCcEEEEEcCCCcccccccCCcEEE-eCCCCeEEECCCChhhCceEEEEEe
Confidence 346789999999999985 4788999999886543 111110 000011 0112469999999999999999998
Q ss_pred CCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCc
Q psy14540 83 NRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEY 162 (291)
Q Consensus 83 ~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~ 162 (291)
+..+ ...+.|.|..++..|... .. +....|.|.+ .+.|.+.+.|++++..+......
T Consensus 81 n~~~--~~~~~L~V~~~~~~p~i~-----------~~-~~~~~L~C~~-~~~p~p~i~W~~~~~~l~~~~~~-------- 137 (171)
T 1ccz_A 81 NITD--TMKFFLYVLEMVSKPMIY-----------WE-CSNATLTCEV-LEGTDVELKLYQGKEHLRSLRQK-------- 137 (171)
T ss_dssp TCCS--CEEEEEEEECCCCCCEEE-----------EE-TTTTEEEEEC-SSCSSCEEEEEETTEEEEEESSS--------
T ss_pred CCCC--cEEEEEEEECcCCCCEEE-----------Ee-cCCcEEEEEe-CCCCCcEEEEEECCEECcCCcce--------
Confidence 7766 677788888765333111 11 1113799999 57788999999999887532211
Q ss_pred eEEEEEeeCCCCCceeEEEEEEecCCCCC
Q psy14540 163 TSSLSIATLSTGHSGNYTCVASNTVASDN 191 (291)
Q Consensus 163 ~~~l~i~~~~~~d~g~y~C~~~~~~~~~~ 191 (291)
.+.+. ...|.|.|+|.|.|..+...
T Consensus 138 --~l~~~--~~~~~g~Y~C~a~N~~~~~~ 162 (171)
T 1ccz_A 138 --TMSYQ--WTNLRAPFKCKAVNRVSQES 162 (171)
T ss_dssp --EEEEE--CSCCSSCEEEEEEETTEEEE
T ss_pred --EEEEe--ccCCCceEEEEEEcccCccc
Confidence 22222 25677778887777766543
No 197
>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*
Probab=99.84 E-value=1.7e-20 Score=153.35 Aligned_cols=185 Identities=14% Similarity=0.232 Sum_probs=106.1
Q ss_pred CCcceeecceeeeecCCcEEEEEEecCC-CC-CeeEEEECCeecCCCeeEeceEEeecc--ceEEEEEEeecCCCCCeEE
Q psy14540 2 HPQLIYKFIQQTLQPGPPVSLKCIATGN-PT-PHISWKLDGYPLAGDRFVMGQYMSLHG--DVISHVNISSVRVEDSGIY 77 (291)
Q Consensus 2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~-~~-~~v~W~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~y 77 (291)
+|.+...+....+.+|+.++|.|.+.+. |. +.+.|++++..+...... ......+ ...+.|.|.++..+| |.|
T Consensus 132 ~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~~~~~~~~~~~--~~~~~~~~~~~~s~L~i~~~~~~d-G~Y 208 (457)
T 1hzh_H 132 GPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFP--AVLQSSGLYSLSSVVTVPSSSLGT-QTY 208 (457)
T ss_dssp CCEEEEECCCSCCCTTCCEEEEEEEESBBSCCCEEEETTTTBCTTEEEEE--EEECTTSCEEEEEEEEECSGGGGT-SCC
T ss_pred CCeEEecCccccccCCCcEEEEEEEeEEeCCCeEEEEEeCCEeccceEcC--ceECCCCCEEEEEEEEecccccCC-ceE
Confidence 4555544444457899999999999884 64 789999998755411111 0011111 123579999999999 999
Q ss_pred EEEEeCCCCceeeeeeEEEEcCC---------C--CCcccceeccCCcce-eecCCCceEEEEEeeCCCC-Cc---eeEE
Q psy14540 78 QCTATNRVGSQTHSADMRVYDAP---------G--QPQDVKLVTSNSRSI-KVHSGDRAGVQCLVTKGDP-PL---TISW 141 (291)
Q Consensus 78 ~C~~~~~~~~~~~~~~l~v~~~~---------~--~~~~~~~~~~~~~~~-~~~~g~~~~l~C~~~~~~p-~~---~~~W 141 (291)
+|.+.+..+.......+.+...+ . ...........+... .+.+|+.++|.|.+. +.| .+ .+.|
T Consensus 209 ~C~a~n~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~~G~~v~L~C~~~-g~~p~p~~~~i~W 287 (457)
T 1hzh_H 209 ICNVNHKPSNTKVDKKAEPKSCDKTHTCPPCPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCVVV-DVSHEDPEVKFNW 287 (457)
T ss_dssp EEEEEEGGGTEEEEEECCCCCSCSSCSCCSCCCCCCSSSCEEEEECCCHHHHHCTTSCCCEEEEEE-CCCTTCCCCEEEE
T ss_pred EEEEEeCCCCcceeEEecccCCCcccccCCCCCccccCCceEEeECcCchhhcccCCceEEEEEEE-cccCCCCceEEEE
Confidence 99999866554333333222110 0 000011111122222 256799999999995 654 32 9999
Q ss_pred eECCEeccCCCceEEeccCCceEE-EEEeeCCCCC---ceeEEEEEEecCCCC
Q psy14540 142 LKNGLPILSDAEITIRSSGEYTSS-LSIATLSTGH---SGNYTCVASNTVASD 190 (291)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~-l~i~~~~~~d---~g~y~C~~~~~~~~~ 190 (291)
++++..+.............+... .....+...| .|.|+|.|.|..+..
T Consensus 288 ~k~~~~~~~~~~~~~~~~~~g~~~~~~~l~i~~~d~~d~G~Y~C~a~n~~~~~ 340 (457)
T 1hzh_H 288 YVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPA 340 (457)
T ss_dssp EETTEEECCCEEEEEEECTTSCEEEEEEECCCHHHHHHTCCEEEEEECTTSSS
T ss_pred EeCCccccccccccceecCCCcEEEEEEEEECHHHccCCCcEEEEEeCCCCCC
Confidence 999988754322211111111111 1112234445 999999999865443
No 198
>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens}
Probab=99.84 E-value=1.7e-20 Score=141.30 Aligned_cols=195 Identities=15% Similarity=0.230 Sum_probs=116.8
Q ss_pred cceeecceeeeecCCcEEEEEEecCCCCCeeEEEEC--CeecC-----CC--eeEe----c-eEEeeccceEEEEEEeec
Q psy14540 4 QLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLD--GYPLA-----GD--RFVM----G-QYMSLHGDVISHVNISSV 69 (291)
Q Consensus 4 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~--~~~~~-----~~--~~~~----~-~~~~~~~~~~~~l~i~~~ 69 (291)
.+...|..+.+.+|++++|.|.+.+.+.+.+.|+|. +.... .. .... . +.......... |.|.++
T Consensus 3 ~v~q~p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~-L~I~~v 81 (253)
T 3to4_D 3 LLEQNPRWRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTE-LRLQVA 81 (253)
T ss_dssp CCEEECSEEEEESSCCEEEEEECSCTTCCCEEEEEEETTCCEEEEEEECSTTCEEEEEETTEEEEEECCSSSC-CEEEEE
T ss_pred EEEeCCCeEEEeCCCcEEEEEEeCCCCcceEEEEEECCCCCcEEEEEECCCcceecCCccCCcEEEEeCCCCe-EEEccC
Confidence 345667788999999999999988877889999982 21110 00 0000 0 11111111112 999999
Q ss_pred CCCCCeEEEEEEeCCCC------ceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCc-eeEEe
Q psy14540 70 RVEDSGIYQCTATNRVG------SQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPL-TISWL 142 (291)
Q Consensus 70 ~~~d~G~y~C~~~~~~~------~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~ 142 (291)
+.+|+|.|.|.+.+..+ .......+.|.........+......+....+..|+.++|.|.+...+|.+ .+.|+
T Consensus 82 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~i~v~W~ 161 (253)
T 3to4_D 82 NMSQGRTLYCTSSADHWTNTGQLYFGEGSKLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWW 161 (253)
T ss_dssp SCSSCEEEEEEEECSCCSTTCCEEECCCEEEEEESCSTTCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEEEEE
T ss_pred ChhhCeEEEEEEecCCCCcccceEECCCEEEEEecCCCCCCCCeEEEeCCChhhcccCCceEEEEEEceEECCcEEEEEE
Confidence 99999999999985433 123344677764321111111111222223344578999999996557766 89999
Q ss_pred ECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCC-CeeEEEE
Q psy14540 143 KNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGH-SGNYTCV 221 (291)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~-~g~y~C~ 221 (291)
++|..+....... ...+.....+..|.|.. .+.|.|.....+| +|.|+|.
T Consensus 162 k~g~~l~~~~~~~---------~~~~~~~~~~~~g~~~~--------------------~s~l~i~~~~~~d~~~~ytC~ 212 (253)
T 3to4_D 162 VNGKEVHSGVSTD---------PQPLKEQPALNDSRYAL--------------------SSRLRVSATFWQNPRNHFRCQ 212 (253)
T ss_dssp ETTEEECTTEEEC---------SSCEESSTTCTTCCEEE--------------------EEEEEEEHHHHTCTTCEEEEE
T ss_pred ECCEECCCceecc---------cccccccccCCCCCEEE--------------------EEEEEECHHHhccCCCEEEEE
Confidence 9998875432110 00111122224456654 2457777777777 7899999
Q ss_pred eeeCCcc
Q psy14540 222 ASNTVAS 228 (291)
Q Consensus 222 ~~~~~~~ 228 (291)
|.|....
T Consensus 213 v~h~~l~ 219 (253)
T 3to4_D 213 VQFYGLS 219 (253)
T ss_dssp EEECCBC
T ss_pred EEeCCCC
Confidence 9987643
No 199
>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A
Probab=99.84 E-value=2.8e-20 Score=156.63 Aligned_cols=180 Identities=23% Similarity=0.416 Sum_probs=123.2
Q ss_pred ceeeeecCCcEEEEEEe-cCCCCCeeEEEECCeecCCCee-------EeceEEeeccceEEEEEEeecCCCCCeEEEEEE
Q psy14540 10 IQQTLQPGPPVSLKCIA-TGNPTPHISWKLDGYPLAGDRF-------VMGQYMSLHGDVISHVNISSVRVEDSGIYQCTA 81 (291)
Q Consensus 10 ~~~~v~~g~~v~l~C~~-~~~~~~~v~W~~~~~~~~~~~~-------~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~ 81 (291)
....+.+|++++|.|.+ .+.+.+.+.|++++..+..... ....+.....+ .+|.|.+++.+|+|.|+|.+
T Consensus 374 ~~~~~~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~r~~~~~~--~~L~i~~v~~~D~G~Y~C~~ 451 (581)
T 3o3u_N 374 QNITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEAWKVLSPQGGGPWDSVARVLPN--GSLFLPAVGIQDEGIFRCQA 451 (581)
T ss_dssp EEEEEETTSCEEECCTTCCSSSSCEEEEEEEETTSSSCEECCSCCSSGGGGTSEECTT--SCEEESSCCGGGCEEEEEEE
T ss_pred cccceecCCcEEEeeeecCCCCCceEEEEEcCCeeEEEEecccCCCCCcCCcEEEcCC--ceEEEeccccccCeEEEEEE
Confidence 34678999999999998 6678889999998763321100 00000011111 25999999999999999999
Q ss_pred eCCCCce-eeeeeEEEEcCCCCCcccceeccCCcceeecCCCc-eEEEEEeeCCCCCceeEEeECCEeccCCCceEEecc
Q psy14540 82 TNRVGSQ-THSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDR-AGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSS 159 (291)
Q Consensus 82 ~~~~~~~-~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~ 159 (291)
.+..+.. ...+.|.|...+..|. ... .... +.+|+. +.|.|.+..++|.+.+.|+++|..+......
T Consensus 452 ~n~~~~~~~~~~~l~V~~~~~~p~----i~~-~~~~-~~~~~~~~~l~C~~~~~~P~~~i~W~~~g~~l~~~~~~----- 520 (581)
T 3o3u_N 452 MNRNGKETKSNYRVRVYQIPGKPE----IVD-SASE-LTAGVPNKVGTCVSEGSYPAGTLSWHLDGKPLVPNEKG----- 520 (581)
T ss_dssp ECTTSCEEEEEEEEEEEBCCCCCE----EES-CCSE-ECTTSCEEEEEEEEEEEBSCCEEEEEETTEECCTTSTT-----
T ss_pred EcCCCceeEEEEEEEEEcCCCCCE----EEc-CCcc-cccCCceeEEEEECCCCCCCCeEEEEECCEECCCCCCe-----
Confidence 9888776 7788899988665431 111 1112 444544 4679999555799999999999988653221
Q ss_pred CCceEEEEEeeCC-CCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeee-cCCCeeEEEEeeeCCc
Q psy14540 160 GEYTSSLSIATLS-TGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLS-TGHSGNYTCVASNTVA 227 (291)
Q Consensus 160 ~~~~~~l~i~~~~-~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~~~g~y~C~~~~~~~ 227 (291)
.+...... ..+.|.|+|. ++|.|..+. .++.|.|+|.|+|...
T Consensus 521 -----~~~~~~~~~~~~~g~y~~~--------------------s~L~i~~~~~~d~~~~y~C~~~n~~~ 565 (581)
T 3o3u_N 521 -----VSVKEQTRRHPETGLFTLQ--------------------SELMVTPARGGDPRPTFSCSFSPGLP 565 (581)
T ss_dssp -----EEEEEEEEECTTTCCEEEE--------------------EEEEECCCTTSCSCCCEEEEEECSSC
T ss_pred -----EEEEeeeEEcCCCceEEEE--------------------EEEEEEeccccCCCceEEEEEeccCC
Confidence 11112222 3388999994 578999988 5668999999999863
No 200
>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*
Probab=99.84 E-value=1.8e-20 Score=136.30 Aligned_cols=160 Identities=23% Similarity=0.326 Sum_probs=98.2
Q ss_pred eecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCceeeeee
Q psy14540 14 LQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQTHSAD 93 (291)
Q Consensus 14 v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~ 93 (291)
+.+|++++|.|.+ +.+.+.|+|+|..+.... ....+|.|.+++.+|+|.|+|.+.+.. +..+.
T Consensus 15 ~~~G~~v~L~C~~---p~~~i~W~k~g~~l~~~~-----------~~~~~L~i~~v~~~DsG~Y~C~~~~~~---s~~~~ 77 (204)
T 1sy6_A 15 YQEDGSVLLTCDA---EAKNITWFKDGKMIGFLT-----------EDKKKWNLGSNAKDPRGMYQCKGSQNK---SKPLQ 77 (204)
T ss_dssp CCSSSEEEEEECS---CSSEEEEEETTEEEEEEE-----------SSCCCEEEEEGGGCCEEEEEEESSSSC---CCCEE
T ss_pred ecCCCeEEEEEcC---CCCEEEEEECCEECCCCC-----------CCCCeEEeCCCCcCCCEEEEEEecCCC---CeeEE
Confidence 4689999999998 678999999998765210 012358899999999999999965422 22234
Q ss_pred EEEEcCC------C-----------------C-CcccceeccCCcceeec-CCCceEEEEEeeCCCCCceeEEeECCEec
Q psy14540 94 MRVYDAP------G-----------------Q-PQDVKLVTSNSRSIKVH-SGDRAGVQCLVTKGDPPLTISWLKNGLPI 148 (291)
Q Consensus 94 l~v~~~~------~-----------------~-~~~~~~~~~~~~~~~~~-~g~~~~l~C~~~~~~p~~~~~W~~~~~~~ 148 (291)
+.+.... . . ..........+ ..+. +|+.++|.|. +.|.+.+.|++++..+
T Consensus 78 v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--~~v~~~G~~v~L~C~---g~p~p~i~W~k~~~~l 152 (204)
T 1sy6_A 78 VYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTP--YKVSISGTTVILTCP---QYPGSEILWQHNDKNI 152 (204)
T ss_dssp EEEEC------------------------------------CCC--CEEEEETTEEEEECS---CCCSSCEEEEETTEEE
T ss_pred EEEEEeccccccccccccccccccccccccccccccccceecCC--ceeeecCCcEEEEcC---CCCCCceEEEECCEEC
Confidence 4443000 0 0 00000011111 2233 8999999998 5788899999999877
Q ss_pred cCCCce-EEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeee-ecCCCeeEEEEeeeCC
Q psy14540 149 LSDAEI-TIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATL-STGHSGNYTCVASNTV 226 (291)
Q Consensus 149 ~~~~~~-~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~-~~~~~g~y~C~~~~~~ 226 (291)
...... .+. .....|.|.++ ..+|+|.|+|.|.|..
T Consensus 153 ~~~~~~~~~~------------------------------------------~~~~~L~I~~v~~~~D~G~Y~C~A~N~~ 190 (204)
T 1sy6_A 153 GGDEDDKNIG------------------------------------------SDEDHLSLKEFSELEQSGYYVCYPRGSK 190 (204)
T ss_dssp SCCTTCTTEE------------------------------------------EETTEEEETTCCHHHHCEEEEEEETTSC
T ss_pred CCccCCceEe------------------------------------------cCCCEEEEeeCCccccCEEEEEEeccCC
Confidence 532110 000 01345777777 7777777777777777
Q ss_pred cc-CCceeEEEE
Q psy14540 227 AS-DNHSSNLRV 237 (291)
Q Consensus 227 ~~-~~~~~~l~v 237 (291)
+. .+..+.|.+
T Consensus 191 g~~~s~~l~l~~ 202 (204)
T 1sy6_A 191 PEDANFYLYLRA 202 (204)
T ss_dssp GGGSSCEEEEEE
T ss_pred CCceeEEEEEEE
Confidence 64 344444444
No 201
>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}
Probab=99.84 E-value=1.1e-19 Score=137.98 Aligned_cols=142 Identities=13% Similarity=0.256 Sum_probs=87.7
Q ss_pred CCcceeecceeeeecCCcEEEEEEecCCC-----CCeeEEEECC--eecC-----CCeeE---eceEEeeccceEEEEEE
Q psy14540 2 HPQLIYKFIQQTLQPGPPVSLKCIATGNP-----TPHISWKLDG--YPLA-----GDRFV---MGQYMSLHGDVISHVNI 66 (291)
Q Consensus 2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~-----~~~v~W~~~~--~~~~-----~~~~~---~~~~~~~~~~~~~~l~i 66 (291)
.+.+...|..+.+.+|++++|.|.+.+.+ .+.+.|+++. ..+. ..... ..+.........++|+|
T Consensus 15 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I 94 (268)
T 1x9q_A 15 DVVMTQTPLSLPVSLGDQASISCRSSQSLVHSNGNTYLRWYLQKPGQSPKVLIYKVSNRVSGVPDRFSGSGSGTDFTLKI 94 (268)
T ss_dssp CCCEEEECSEECCCTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEE
T ss_pred cceEEeeCCeEEecCCCCEEEEeEecCCcccccCCceEEEEEECCCCCCEEEEEecCCCCCCCcccEEEEcCCCEEEEEE
Confidence 45677788888999999999999998765 4789999853 2110 00000 01111111234568999
Q ss_pred eecCCCCCeEEEEEEeCCCCc-eeeeeeEEEEcCCCC-----Ccc-c----------ceeccCCcceeecCCCceEEEEE
Q psy14540 67 SSVRVEDSGIYQCTATNRVGS-QTHSADMRVYDAPGQ-----PQD-V----------KLVTSNSRSIKVHSGDRAGVQCL 129 (291)
Q Consensus 67 ~~~~~~d~G~y~C~~~~~~~~-~~~~~~l~v~~~~~~-----~~~-~----------~~~~~~~~~~~~~~g~~~~l~C~ 129 (291)
.+++.+|+|.|.|.+.+..+. ......|.|...+.. |+. . ......+....+.+|+.++|.|.
T Consensus 95 ~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~p~~pp~~~~~~~~~~~~~~v~~~~~~~~~v~~G~~v~L~C~ 174 (268)
T 1x9q_A 95 NRVEAEDLGVYFCSQSTHVPWTFGGGTKLEIKSSADDAKKDAAKKDDAKKDDAKKDGGVKLDETGGGLVQPGGAMKLSCV 174 (268)
T ss_dssp SSCCGGGCEEEEEEECSSSSCEECCCEEEC------------------------CGGGCEEEEECCEEECTTCCEEEEEE
T ss_pred CCCChhHCEEEEEEEecCCCceEcCCEEEEEccCccCCCccccccccccccccccccceEEECCCceEecCCCcEEEEEE
Confidence 999999999999999876432 233456666554320 000 0 00112233467889999999999
Q ss_pred eeCCCC--CceeEEeEC
Q psy14540 130 VTKGDP--PLTISWLKN 144 (291)
Q Consensus 130 ~~~~~p--~~~~~W~~~ 144 (291)
+. +.+ .+.+.|+++
T Consensus 175 ~~-~~~~~~~~v~W~k~ 190 (268)
T 1x9q_A 175 TS-GFTFGHYWMNWVRQ 190 (268)
T ss_dssp EE-SSCGGGCEEEEEEE
T ss_pred ec-CccccccEEEEEEe
Confidence 94 544 378999985
No 202
>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*
Probab=99.84 E-value=8.5e-20 Score=131.13 Aligned_cols=128 Identities=20% Similarity=0.291 Sum_probs=94.1
Q ss_pred ceeecce--eeeecCCcEEEEEEecCCCCC--eeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEE
Q psy14540 5 LIYKFIQ--QTLQPGPPVSLKCIATGNPTP--HISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCT 80 (291)
Q Consensus 5 ~~~~~~~--~~v~~g~~v~l~C~~~~~~~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~ 80 (291)
|.+.|.. +.|..|++++|.|.+ +.|.+ .|+|++.+..+. +.. .......|.|.+++.+|+|.|.|.
T Consensus 8 ~~V~pp~~~v~v~~G~sv~L~C~a-~~p~P~~~i~W~~~~~~l~--~~~-------~~~~~~~L~I~~v~~~d~G~Y~C~ 77 (210)
T 1gsm_A 8 LQVEPPEPVVAVALGASRQLTCRL-ACADRGASVQWRGLDTSLG--AVQ-------SDTGRSVLTVRNASLSAAGTRVCV 77 (210)
T ss_dssp EEEESCCSEEEEETTCCEEEEEEE-CCSSTTCEEEEESSTTTTC--CEE-------EESSEEEEEECSCCGGGCEEEEEE
T ss_pred EEEeCCCCceEEeCCCCEEEEEEC-CCCCCCcceEEeecccccC--cEE-------ecCCccEEEECccCcccCceEEEE
Confidence 3344443 489999999999999 77666 999998554431 111 012336699999999999999999
Q ss_pred EeCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCC----ceeEEeECCEeccCC
Q psy14540 81 ATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPP----LTISWLKNGLPILSD 151 (291)
Q Consensus 81 ~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~----~~~~W~~~~~~~~~~ 151 (291)
+.+..+.....+.|.|..+|..+ . . . + ..+.+|+.+ |.|.+.+.+|. +++.|++++.++...
T Consensus 78 a~n~~~~~~~~~~ltV~~~P~~~---~-i-~-~--~~~~~g~~~-l~C~a~g~~P~~~~~lti~Wlk~~~~L~~~ 143 (210)
T 1gsm_A 78 GSCGGRTFQHTVQLLVYAFPNQL---T-V-S-P--AALVPGDPE-VACTAHKVTPVDPNALSFSLLVGGQELEGA 143 (210)
T ss_dssp EEETTEEEEEEEEEEEEBCCSEE---E-E-E-S--SSBCTTCCE-EEEEEEEEBCCCTTTEEEEEEETTEECTTC
T ss_pred EEeCCCceEEEEEEEEEecCCCc---E-E-c-c--ceEEeCCce-EEEEeCCCCCCCCCCcEEEEEECCEEcccc
Confidence 99887777888999999876322 1 1 1 1 155678888 99999655674 589999999998543
No 203
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*
Probab=99.84 E-value=9.2e-21 Score=143.84 Aligned_cols=116 Identities=19% Similarity=0.353 Sum_probs=87.8
Q ss_pred cceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCC-Cc
Q psy14540 9 FIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRV-GS 87 (291)
Q Consensus 9 ~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~-~~ 87 (291)
+....+.+|+.++|.|.+. |.+.+.| +|..+.... ....|.|..+..+|.|.|+|.+.+.. |.
T Consensus 105 ~~~~~v~~G~~v~l~C~~~--p~~~i~W--~g~~~~~~~------------~~~~l~i~~~~~~~~g~Y~C~a~n~~~g~ 168 (265)
T 2oz4_A 105 LTKPEVSEGTEVTVKCEAH--PRAKVTL--NGVPAQPLG------------PRAQLLLKATPEDNGRSFSCSATLEVAGQ 168 (265)
T ss_dssp ESCSEEETTCEEEEEEECC--TTSEEEE--SSCSSSCCS------------SEECCEEECCGGGTTEEEEEEEEEECSSS
T ss_pred cCCceecCCCcEEEEEEcc--CCCEEEE--CCEEccCCC------------CcEEEEEccccccCCceEEEEEEcCCCCC
Confidence 4556788999999999997 8889999 777664211 12457888999999999999997543 55
Q ss_pred ee---eeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCE
Q psy14540 88 QT---HSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGL 146 (291)
Q Consensus 88 ~~---~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~ 146 (291)
.. ..+.|.|...|... ....+....+.+|+.++|.|.+ .|.|.+.+.|++++.
T Consensus 169 ~~~~s~~~~l~V~~~p~~~-----~~~~p~~~~v~~g~~~~l~C~~-~g~P~p~i~W~~~~~ 224 (265)
T 2oz4_A 169 LIHKNQTRELRVLYGPRLD-----ERDCPGNWTWPENSQQTPMCQA-WGNPLPELKCLKDGT 224 (265)
T ss_dssp EEEEEEEEEEEEEEEEECC-----GGGSCSEEEEETTCEECCCCCC-EEESCCEEEEEETTT
T ss_pred cccccccEEEEEEeCCccc-----cccCCCccEEcCCCeEEEEeEC-ccCCCCeEEEEECCc
Confidence 44 66778887655321 1122345678899999999998 799999999999986
No 204
>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H
Probab=99.84 E-value=1.9e-19 Score=132.88 Aligned_cols=140 Identities=21% Similarity=0.301 Sum_probs=88.8
Q ss_pred eecceeeeecCCcEEEEEEecCCC--CCeeEEEECC--eecC------CC---eeE----eceEEe--eccceEEEEEEe
Q psy14540 7 YKFIQQTLQPGPPVSLKCIATGNP--TPHISWKLDG--YPLA------GD---RFV----MGQYMS--LHGDVISHVNIS 67 (291)
Q Consensus 7 ~~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~--~~~~------~~---~~~----~~~~~~--~~~~~~~~l~i~ 67 (291)
..|..+.+.+|++++|.|.+.+.+ .+.+.|+|.. .... .. ... ..+... ......++|.|.
T Consensus 5 ~qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~ 84 (223)
T 1dee_B 5 VESGGGVVQPGKSLRLSCAASGFTFSGYGMHWVRQAPGKGLEWVALISYDESNKYYADSVKGRFTISRDNSKNTLYLQMN 84 (223)
T ss_dssp EEECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSCCEEECTTTBTTEEEEEETTTTEEEEEEC
T ss_pred EcCCCEEEcCCCcEEEEEEecCcccCCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCeEEEEecCCCCEEEEEEC
Confidence 345678899999999999998754 4789999843 1110 00 000 011111 112345789999
Q ss_pred ecCCCCCeEEEEEEeCCCC------ceeeeeeEEEEcCC-CCCcccceeccCCcceeecCCCceEEEEEeeCCCCCc-ee
Q psy14540 68 SVRVEDSGIYQCTATNRVG------SQTHSADMRVYDAP-GQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPL-TI 139 (291)
Q Consensus 68 ~~~~~d~G~y~C~~~~~~~------~~~~~~~l~v~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~ 139 (291)
+++.+|+|.|.|.+.+..+ .....+.|.|...+ ..| .+.. ..+. ..+.+|+.++|.|.+...+|.+ .+
T Consensus 85 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P--~i~~-~~~~-~~~~~g~~v~L~C~~~g~~P~p~~v 160 (223)
T 1dee_B 85 SLRAEDTAVYYCAKVKFYDPTAPNDYWGQGTLVTVSSGSASAP--TLFP-LVSC-ENSNPSSTVAVGCLAQDFLPDSITF 160 (223)
T ss_dssp SCCGGGCEEEEEEEESSSSTTCCEEEECCCEEEEECSSCCBCC--EEEE-EECT-TCCCSSSEEEEEEEEEEEBSSCCEE
T ss_pred CCCHHHCEEEEEEEeccccCcccceeecCcEEEEEccCCCCCC--EEEE-ecCC-cccCCCCcEEEEEEEEEEeCCCeEE
Confidence 9999999999999987542 12234577776422 122 1111 1111 2346899999999996555776 99
Q ss_pred EEeE-CCEeccC
Q psy14540 140 SWLK-NGLPILS 150 (291)
Q Consensus 140 ~W~~-~~~~~~~ 150 (291)
.|++ +|..+..
T Consensus 161 ~W~~~~g~~l~~ 172 (223)
T 1dee_B 161 SWKYKNNSDISS 172 (223)
T ss_dssp EEEETTSCBCSC
T ss_pred EeEccCCCccce
Confidence 9999 8887743
No 205
>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*
Probab=99.84 E-value=1.7e-19 Score=132.95 Aligned_cols=135 Identities=21% Similarity=0.340 Sum_probs=88.6
Q ss_pred eecceeeeecCCcEEEEEEecCCC--CCeeEEEECC--ee---cC---------------CCeeEeceEEeeccceEEEE
Q psy14540 7 YKFIQQTLQPGPPVSLKCIATGNP--TPHISWKLDG--YP---LA---------------GDRFVMGQYMSLHGDVISHV 64 (291)
Q Consensus 7 ~~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~--~~---~~---------------~~~~~~~~~~~~~~~~~~~l 64 (291)
..|....+.+|++++|.|.+.+.+ .+.+.|+|.. .. +. ..++... .......++|
T Consensus 5 ~q~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~---~~~~~~~~~L 81 (220)
T 2fbj_H 5 LESGGGLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIIS---RDNAKNSLYL 81 (220)
T ss_dssp EEECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEE---ECSSSCEEEE
T ss_pred ecCCCeEecCCCcEEEEEEecCccCCCceEEEEEECCCCCeEEEEEEccCCCceecCCccCCcEEEE---eeCCCCEEEE
Confidence 345668899999999999998754 5789999843 21 10 0111110 0112345789
Q ss_pred EEeecCCCCCeEEEEEEeCCCCc---eeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCC--cee
Q psy14540 65 NISSVRVEDSGIYQCTATNRVGS---QTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPP--LTI 139 (291)
Q Consensus 65 ~i~~~~~~d~G~y~C~~~~~~~~---~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~--~~~ 139 (291)
+|.+++.+|+|.|.|.+.+..+. ....+.|.|...+..++ .... .. ...+.+|+.++|.|.+...+|. +.+
T Consensus 82 ~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P-~v~~-~~--~~~~~~g~~v~L~C~~~g~~P~~~~~v 157 (220)
T 2fbj_H 82 QMSKVRSEDTALYYCARLHYYGYNAYWGQGTLVTVSAESARNP-TIYP-LT--LPPALSSDPVIIGCLIHDYFPSGTMNV 157 (220)
T ss_dssp EECSCCGGGCEEEEEEEEETTTEEEEECCCEEEEECSSCCBCC-EEEE-EC--CCSSSCCSSEEEEEEEEEEBSCCCEEE
T ss_pred EECCCChhhCEEEEEEEeccccccceecCCEEEEecCCCCCCC-EEEE-ee--cccccCCCcEEEEEEEEeEECCCcEEE
Confidence 99999999999999999875442 23345777765332111 1111 11 2245689999999999655576 799
Q ss_pred EEeECCEec
Q psy14540 140 SWLKNGLPI 148 (291)
Q Consensus 140 ~W~~~~~~~ 148 (291)
.|++++..+
T Consensus 158 ~W~~~~~~~ 166 (220)
T 2fbj_H 158 TWGKSGKDI 166 (220)
T ss_dssp EESCCCSSC
T ss_pred EEecCCEec
Confidence 999998765
No 206
>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}
Probab=99.84 E-value=2.9e-20 Score=132.29 Aligned_cols=154 Identities=18% Similarity=0.272 Sum_probs=99.0
Q ss_pred ceeeeecCCcEEEEEEecC-CCCCeeEEEEC-CeecC---CC-ee-Ee-c---eEEeeccceEEEEEEeecCCCCCeEEE
Q psy14540 10 IQQTLQPGPPVSLKCIATG-NPTPHISWKLD-GYPLA---GD-RF-VM-G---QYMSLHGDVISHVNISSVRVEDSGIYQ 78 (291)
Q Consensus 10 ~~~~v~~g~~v~l~C~~~~-~~~~~v~W~~~-~~~~~---~~-~~-~~-~---~~~~~~~~~~~~l~i~~~~~~d~G~y~ 78 (291)
....+.+|++++|.|.+.. .+.+.|.|+++ +..+. .. .. .. . .+... .....+|.|.+++.+|+|.|+
T Consensus 7 ~~v~v~~G~~vtL~c~~~~~~~~~~i~W~k~~~~~i~~~~~~~~~~~~~~~~~~R~~l-~~~~~sL~I~~v~~~D~G~Y~ 85 (180)
T 2dru_A 7 PNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDL-DKTNGALRIYNVSKEDRGDYY 85 (180)
T ss_dssp CEEEEETTSCEEECCCSSCCCSCSEEEEESSSSCEEEEECSSSCEEECSSTTTTTEEE-CTTTCCEEECSCCGGGCEEEE
T ss_pred ceEEEEeCCCEEEeCCCCCCCceeEEEEEecCCeEEEEEECCCCeeEcchhcCCeEEE-eCCCccEEEcCCCHHHCeEEE
Confidence 4567999999999999854 34678999994 33221 10 00 00 0 00111 112246999999999999999
Q ss_pred EEEeCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEec
Q psy14540 79 CTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRS 158 (291)
Q Consensus 79 C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~ 158 (291)
|.+.+.. .....+.|.|..++..|. +. ..+..++|.|.+..+ |.+.+.|++++..+...
T Consensus 86 C~v~~~~-~~~~~~~L~V~~~~~~P~-----------i~-~~~~~v~L~C~~~~g-p~p~i~W~~~~~~l~~~------- 144 (180)
T 2dru_A 86 MRMLHET-EDQWKITMEVYEMVSKPM-----------IY-WECSNATLTCEVLEG-TDVELKLYQGKEHLRSL------- 144 (180)
T ss_dssp EEEESSS-EEEEEEEEEEECCCCCCE-----------EE-EEGGGTEEEEECSSC-TTCEEEEEETTEEEEEE-------
T ss_pred EEEEcCC-eEEEEEEEEEECCCCCCE-----------EE-ecCCCEEEEEEeCCC-CCCEEEEEECCeECcCC-------
Confidence 9998655 566677888876543321 11 134569999998556 89999999999877410
Q ss_pred cCCceEEEEEeeCCCCCceeEEEEEEecCCCC
Q psy14540 159 SGEYTSSLSIATLSTGHSGNYTCVASNTVASD 190 (291)
Q Consensus 159 ~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~ 190 (291)
....+.+.. .+|.|.|+|.|.|..+..
T Consensus 145 ---~~~~l~~~~--~~d~g~Y~C~a~N~~~~~ 171 (180)
T 2dru_A 145 ---RQKTMSYQW--TNLRAPFKCKAVNRVSQE 171 (180)
T ss_dssp ---SSSEEEEEC--SCCSSCEEEEEEETTEEE
T ss_pred ---CCCEEEEEE--hhcCccEEEEEecCcCcc
Confidence 012333322 567777777777766543
No 207
>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...
Probab=99.84 E-value=2.6e-20 Score=137.91 Aligned_cols=193 Identities=19% Similarity=0.240 Sum_probs=110.5
Q ss_pred eecceeeeecCCcEEEEEEecCCC--CCeeEEEECC--eecC--------CCeeE-----eceEEee--ccceEEEEEEe
Q psy14540 7 YKFIQQTLQPGPPVSLKCIATGNP--TPHISWKLDG--YPLA--------GDRFV-----MGQYMSL--HGDVISHVNIS 67 (291)
Q Consensus 7 ~~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~--~~~~--------~~~~~-----~~~~~~~--~~~~~~~l~i~ 67 (291)
..|....+.+|++++|.|.+.+.+ .+.+.|+|++ ..+. ..... ..+.... .....++|.|.
T Consensus 5 ~qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~ 84 (227)
T 1mju_H 5 QQPGAELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLS 84 (227)
T ss_dssp ECCSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred cCCCCeEEcCCCCEEEEEEecCCccccceEEEEEeCCCCCcEEEEEEeccCCceeeCCccCCcEEEEEeCCCCeEEEEEC
Confidence 456678899999999999998765 6789999853 2110 00000 0111111 12345789999
Q ss_pred ecCCCCCeEEEEEEeCCCCc-eeeeeeEEEEcCC-CCCcccceeccCCcceeecCCCceEEEEEeeCCCCCc-eeEEeEC
Q psy14540 68 SVRVEDSGIYQCTATNRVGS-QTHSADMRVYDAP-GQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPL-TISWLKN 144 (291)
Q Consensus 68 ~~~~~d~G~y~C~~~~~~~~-~~~~~~l~v~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~~ 144 (291)
+++.+|+|.|.|.+.+.... ....+.|.|...+ ..| ......+. ..+.+|+.++|.|.+.+.+|.+ .+.|+++
T Consensus 85 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~P---~v~~~~~~-~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~ 160 (227)
T 1mju_H 85 SLTSDDSAVYYCANKLGWFPYWGQGTLVTVSAAKTTAP---SVYPLAPV-CGDTSGSSVTLGCLVKGYFPEPVTLTWNSG 160 (227)
T ss_dssp SCCGGGCEEEEEEEEETTEEEECCCEEEEECSSCCBCC---EEEEECCC-C------CEEEEEEEEEEBSSCCEEEEGGG
T ss_pred CCCcccCEEEEEEECCCCceEEcCcEEEEEcCCCCCCC---EEEEecCC-ccccCCCcEEEEEEeecEeCCCeEEEEecC
Confidence 99999999999999864321 2234567776522 111 11111111 2356799999999995445766 9999998
Q ss_pred CEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeee
Q psy14540 145 GLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASN 224 (291)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~ 224 (291)
+..+...... . . + .. |.|.- .+.|.|..+..+| |.|+|.|.|
T Consensus 161 g~~~~~~~~~---------~-~-~-----~~-g~~~~--------------------~s~L~i~~~~~~~-g~Y~C~a~n 202 (227)
T 1mju_H 161 SLSSGVHTFP---------A-V-L-----QS-DLYTL--------------------SSSVTVTSSTWPS-QSITCNVAH 202 (227)
T ss_dssp TBCTTEEECC---------C-E-E-----ET-TEEEE--------------------EEEEEECTTTTTT-SCCEEEEEE
T ss_pred CCcCCcEECC---------c-e-e-----cC-CeEEE--------------------EEEEEEchhhcCC-CeEEEEEEE
Confidence 8764211000 0 0 0 01 33321 3457777777767 888998888
Q ss_pred CCccCCceeEEEEecCC
Q psy14540 225 TVASDNHSSNLRVNVPP 241 (291)
Q Consensus 225 ~~~~~~~~~~l~v~~~p 241 (291)
..........+.+..+|
T Consensus 203 ~~~~~~~~~~~~~~~~p 219 (227)
T 1mju_H 203 PASSTKVDKKIEPRGPT 219 (227)
T ss_dssp GGGTEEEEEECCCCCC-
T ss_pred CCCCcceEEEeCCCCCC
Confidence 76554444444444443
No 208
>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*
Probab=99.84 E-value=2.5e-20 Score=137.42 Aligned_cols=134 Identities=25% Similarity=0.388 Sum_probs=88.0
Q ss_pred eecceeeeecCCcEEEEEEecCCC--CCeeEEEECC--ee---cC---C--------------CeeEeceEEeeccceEE
Q psy14540 7 YKFIQQTLQPGPPVSLKCIATGNP--TPHISWKLDG--YP---LA---G--------------DRFVMGQYMSLHGDVIS 62 (291)
Q Consensus 7 ~~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~--~~---~~---~--------------~~~~~~~~~~~~~~~~~ 62 (291)
..|....+.+|++++|.|.+.+.+ .+.+.|+|++ .. +. . .++... .......+
T Consensus 5 ~~p~~~~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~---~~~~~~~~ 81 (220)
T 1pz5_B 5 EESGGGLVQPGGSMKLSCVASGFTFSNYWMEWVRQSPEKGLEWVAEIRLKSNNYATHYAESVKGRFTIS---RDDSKSSV 81 (220)
T ss_dssp EEECCEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEECCGGGTTCEEECGGGTTTEEEE---EEGGGTEE
T ss_pred eccCCEEEcCCCeEEEEEEEcCCccCCccEEEEEeCCCCCcEEEEEEEcCCCccccccCcccCCcEEEE---EeCCCCeE
Confidence 456778899999999999998755 6789999853 21 10 0 111110 01123456
Q ss_pred EEEEeecCCCCCeEEEEEEeCCCCc---eeeeeeEEEEcCC-CCCcccceeccCCcceeecCCCceEEEEEeeCCCCCc-
Q psy14540 63 HVNISSVRVEDSGIYQCTATNRVGS---QTHSADMRVYDAP-GQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPL- 137 (291)
Q Consensus 63 ~l~i~~~~~~d~G~y~C~~~~~~~~---~~~~~~l~v~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~- 137 (291)
+|.|.+++.+|+|.|.|.+.+..+. ....+.|.|...+ ..| ...... ....+.+|+.++|.|.+.+.+|.+
T Consensus 82 ~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P---~i~~~~-~~~~~~~g~~v~L~C~~~g~~P~p~ 157 (220)
T 1pz5_B 82 YLQMNNLRAEDTGIYYCTRGGAVGAMDYWGQGTSVTVSSATTTAP---SVYPLV-PGCSDTSGSSVTLGCLVKGYFPEPV 157 (220)
T ss_dssp EEEECSCCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCC---EEEEEC-CCSCCSCSSSEEEEEEEEEEBSSCC
T ss_pred EEEEccCCHHHCEEEEEEEecCCcccceECCCEEEEEccCCCCCC---eEEEcc-cccccCCCCcEEEEEEEEEEeCCCe
Confidence 8999999999999999999876432 1234567776432 111 111111 122356899999999995445888
Q ss_pred eeEEeECCEe
Q psy14540 138 TISWLKNGLP 147 (291)
Q Consensus 138 ~~~W~~~~~~ 147 (291)
.+.|++++..
T Consensus 158 ~v~W~~~~~~ 167 (220)
T 1pz5_B 158 TVKWNYGALS 167 (220)
T ss_dssp EEEEGGGTCC
T ss_pred EEEEecCCcc
Confidence 9999998764
No 209
>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Probab=99.83 E-value=2.1e-19 Score=134.41 Aligned_cols=144 Identities=16% Similarity=0.227 Sum_probs=93.2
Q ss_pred CCcceeecceeeeecCCcEEEEEEecCC--CCCeeEEEECC--eecC-----C--Cee------EeceEEe--eccceEE
Q psy14540 2 HPQLIYKFIQQTLQPGPPVSLKCIATGN--PTPHISWKLDG--YPLA-----G--DRF------VMGQYMS--LHGDVIS 62 (291)
Q Consensus 2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~--~~~~v~W~~~~--~~~~-----~--~~~------~~~~~~~--~~~~~~~ 62 (291)
++.+...|..+.+.+|++++|.|.+.+. +...+.|+|.. ..+. . ... ...+... ..+...+
T Consensus 1 ~~~v~q~p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~ 80 (242)
T 1hxm_B 1 AGHLEQPQISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTS 80 (242)
T ss_dssp CCEEECCCSEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEE
T ss_pred CCccCcCCceEEecCCCcEEEEEEeCCccccCceEEEEEeCCCCCcEEEEEEecCCceecCCcccCCeEEEEecCCCcEE
Confidence 3566777888999999999999999874 56789999843 2110 0 000 0011111 1122457
Q ss_pred EEEEeecCCCCCeEEEEEEeCCCC-------ceeeeeeEEEEcCCC----CCcccceeccCCcceeecCCCceEEEEEee
Q psy14540 63 HVNISSVRVEDSGIYQCTATNRVG-------SQTHSADMRVYDAPG----QPQDVKLVTSNSRSIKVHSGDRAGVQCLVT 131 (291)
Q Consensus 63 ~l~i~~~~~~d~G~y~C~~~~~~~-------~~~~~~~l~v~~~~~----~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~ 131 (291)
+|.|.+++.+|+|.|.|.+.+... .....+.|.|...+. .|.... ..+....+.+|+.++|.|.+.
T Consensus 81 ~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~p~~~v---~~p~~~~~~~g~~v~L~C~~~ 157 (242)
T 1hxm_B 81 TLTIHNVEKQDIATYYCALWEAQQELGKKIKVFGPGTKLIITDKQLDADVSPKPTI---FLPSIAETKLQKAGTYLCLLE 157 (242)
T ss_dssp EEEECSCCGGGCEEEEEEEEEECSSTTCEEEEECCCEEEEEESSCCCSCCSCBCCC---CCCCGGGGGSSSCEEEEEEEE
T ss_pred EEEECCCCcccCEEEEEeeecCCccccccceeEcCcEEEEEcccccCCCcCCCceE---ECCChhhcccCCCceEEEEEe
Confidence 899999999999999999986421 122346788876432 111111 112334466799999999996
Q ss_pred CCCCC-ceeEEeECCE-ec
Q psy14540 132 KGDPP-LTISWLKNGL-PI 148 (291)
Q Consensus 132 ~~~p~-~~~~W~~~~~-~~ 148 (291)
+.+|. +.+.|++++. .+
T Consensus 158 g~~P~~~~v~W~~~~~~~l 176 (242)
T 1hxm_B 158 KFFPDVIKIHWEEKKSNTI 176 (242)
T ss_dssp EESSCCEEEEEEESSSCCC
T ss_pred eEECCCeEEEEEcCCCEee
Confidence 44575 7999999986 45
No 210
>3nl4_H Antigen binding fragment,immunoglobulin IGG - HEA; FAB, rabbit, conformation-specific, amyloid, immune system; 1.54A {Oryctolagus cuniculus} PDB: 4hbc_H
Probab=99.83 E-value=5.5e-20 Score=135.11 Aligned_cols=139 Identities=18% Similarity=0.300 Sum_probs=85.6
Q ss_pred eeecceeeeecCCcEEEEEEecC--CCCCeeEEEECC--ee---c---CCC-e-e----EeceEEeeccceEEEEEEeec
Q psy14540 6 IYKFIQQTLQPGPPVSLKCIATG--NPTPHISWKLDG--YP---L---AGD-R-F----VMGQYMSLHGDVISHVNISSV 69 (291)
Q Consensus 6 ~~~~~~~~v~~g~~v~l~C~~~~--~~~~~v~W~~~~--~~---~---~~~-~-~----~~~~~~~~~~~~~~~l~i~~~ 69 (291)
+..|....+.+|++++|.|.+.+ .+.+.+.|++.. .. + ... . . ...+.........++|.|.++
T Consensus 3 l~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v 82 (215)
T 3nl4_H 3 VEESGGRLVTPGTPLTLACTVSGFSLNTYSMFWVRQAPGKGLQWIGIISNFGVIYYATWAKGRFTISKTSTTVDLKITSP 82 (215)
T ss_dssp EEEECCCEECTTCCEEEEEEEESSCTTTCCEEEEEECTTSCEEEEEEECTTCCEEECGGGTTTEEEEECSSEEEEEESSC
T ss_pred eEcCCCEEEcCCCcEEEEEEecCcccCCCeEEEEEECCCCCeEEEEEEecCCccccCCcccCCEEEEeeCCEEEEEECCC
Confidence 45677788999999999999976 346789999832 11 1 000 0 0 001111112345577999999
Q ss_pred CCCCCeEEEEEEeCCCCc----eeeeeeEEEEcCC-CCCcccceeccCCcceeecCCCceEEEEEeeCCCC-CceeEEeE
Q psy14540 70 RVEDSGIYQCTATNRVGS----QTHSADMRVYDAP-GQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDP-PLTISWLK 143 (291)
Q Consensus 70 ~~~d~G~y~C~~~~~~~~----~~~~~~l~v~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p-~~~~~W~~ 143 (291)
+.+|+|.|.|.+.+..+. ....+.+.|...+ ..| ...... ....+.+|+.++|.|.+..+.| ...+.|++
T Consensus 83 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P---~i~~~~-~~~~~~~g~~v~l~C~~~~~~p~~~~v~W~~ 158 (215)
T 3nl4_H 83 TTEDTATYFCVRKYGSEWGGDLWGPGTLVTVSSGQPKAP---SVFPLA-PCCGDTPSSTVTLGCLVKGYLPEPVTVTWNS 158 (215)
T ss_dssp CGGGCEEEEEEEECSSSSCEEEECCCEEEEECSSCCBCC---EEEEEC-CCTTCCC--CEEEEEEEEEEBSSCCEEEEGG
T ss_pred CcccCEEEEEEEecCCCccceEEcCCEEEEEeCCCcCCC---EEEEec-CCccccCCCcEEEEEEEeeeeCCCeEEEEee
Confidence 999999999999876442 3344567776322 111 111111 1224557999999999954444 45688999
Q ss_pred CCEec
Q psy14540 144 NGLPI 148 (291)
Q Consensus 144 ~~~~~ 148 (291)
++..+
T Consensus 159 ~g~~~ 163 (215)
T 3nl4_H 159 GTLTN 163 (215)
T ss_dssp GTBCT
T ss_pred CCEEC
Confidence 88654
No 211
>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2
Probab=99.83 E-value=8.8e-22 Score=159.99 Aligned_cols=185 Identities=14% Similarity=0.209 Sum_probs=112.9
Q ss_pred CCcceeecceeeeecCCcEEEEEEecCC-CCC-eeEEEECCeecCCCeeEeceEEe-eccceEEEEEEeecCCCCCeEEE
Q psy14540 2 HPQLIYKFIQQTLQPGPPVSLKCIATGN-PTP-HISWKLDGYPLAGDRFVMGQYMS-LHGDVISHVNISSVRVEDSGIYQ 78 (291)
Q Consensus 2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~-~~~-~v~W~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~i~~~~~~d~G~y~ 78 (291)
+|.+...+....+.+|+.++|.|.+.+. |.+ .+.|++++..+... ....... ......+.|.|.+++.+| |.|+
T Consensus 119 ~P~i~~~~~~~~~~~G~~v~L~C~~~g~~P~p~~v~W~k~~~~~~~~--~~~~~~~~~~~~~~s~L~i~~~~~~d-g~Y~ 195 (434)
T 1igy_B 119 PPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVH--TFPAVLQSDLYTLSSSVTVPSSPRPS-ETVT 195 (434)
T ss_dssp CCCEEEECCCCCCCCTTEEEEEEEEEEEBSSCCEEEETTTTBCSSEE--ECCCEECSSCEEEEEEEEEETTTTTS-SCCE
T ss_pred CCeEEEcCCccccCCCCcEEEEEEEeeecCCCeEEEEeeCCcCCCeE--ecCceecCCcEEEEEEEEEcchhcCC-CcEE
Confidence 3555443333456799999999999874 665 89999998753210 0000000 011123568999999989 9999
Q ss_pred EEEeCCCCceeeeeeEEEEcCC------CCCcccceeccCCccee-ecCCCceEEEEEeeCCCC----CceeEEeECCEe
Q psy14540 79 CTATNRVGSQTHSADMRVYDAP------GQPQDVKLVTSNSRSIK-VHSGDRAGVQCLVTKGDP----PLTISWLKNGLP 147 (291)
Q Consensus 79 C~~~~~~~~~~~~~~l~v~~~~------~~~~~~~~~~~~~~~~~-~~~g~~~~l~C~~~~~~p----~~~~~W~~~~~~ 147 (291)
|.+.+..+.......+.+.... ..+.........+.... +.+|+.++|.|.+. +.+ .+.+.|++++..
T Consensus 196 C~a~n~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~v~~~~p~~~~~v~~G~~~~L~C~~~-g~~p~P~~~~i~W~k~~~~ 274 (434)
T 1igy_B 196 CNVAHPASSTKVDKKIVPRDCGCKPCICTVPEVSSVFIFPPKPKDTLLITVTPKVTCVVV-DISKDDPEVQFSWFVDNVE 274 (434)
T ss_dssp EEEECTTTTCCEEEECCCCCCCCCCCCCCCSSSCCEEEECCCHHHHHSTTSCCEEEEEEC-CCCSSCCCCCBCBBSSSCC
T ss_pred EEEEeCCCCccceeeccCCCCCCccccCCCCcCcEEEEeCCChHHhcccCCCcEEEEEEe-ccccCCCCeEEEEEeCCcc
Confidence 9999888764433333221100 00000111112222122 77899999999995 653 458999999977
Q ss_pred ccCCCceEEe--ccC--CceEEEEEeeCCCCCceeEEEEEEecCCCC
Q psy14540 148 ILSDAEITIR--SSG--EYTSSLSIATLSTGHSGNYTCVASNTVASD 190 (291)
Q Consensus 148 ~~~~~~~~~~--~~~--~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~ 190 (291)
+......... ..+ .....|.|..+..+|.|.|+|.|.|..+..
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~ 321 (434)
T 1igy_B 275 VHTAQTQPREEQFNSTFRVVSALPIMHQDWLNGKEFKCRVNSAAFPA 321 (434)
T ss_dssp BCCCSCCCCCCCCSSSCCCCCCEECCHHHHHHTCCCBCCBCCSSCSS
T ss_pred cCCcccCcceeCCCCcEEEEEEEEECHHHccCCCcEEEEEECCCCCC
Confidence 6533211111 111 123468888999999999999999987753
No 212
>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*
Probab=99.83 E-value=8.2e-20 Score=135.08 Aligned_cols=135 Identities=21% Similarity=0.285 Sum_probs=88.5
Q ss_pred eecceeeeecCCcEEEEEEecCCC--CCeeEEEECC--eecC------------------CCeeEeceEEeeccceEEEE
Q psy14540 7 YKFIQQTLQPGPPVSLKCIATGNP--TPHISWKLDG--YPLA------------------GDRFVMGQYMSLHGDVISHV 64 (291)
Q Consensus 7 ~~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~--~~~~------------------~~~~~~~~~~~~~~~~~~~l 64 (291)
..|....+.+|++++|.|.+.+.+ .+.+.|++.. ..+. ..++... .......++|
T Consensus 5 ~qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~---~~~~~~~~sL 81 (225)
T 1op3_H 5 VESGGGLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVS---RDDLEDFVYL 81 (225)
T ss_dssp EEECCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEE---EETTTTEEEE
T ss_pred EcCCCeEecCCCCEEEEEEecCcccCCceEEEEEeCCCCCcEEEEEEccCCCccccCcccCCceEEE---ecCCCCEEEE
Confidence 346677899999999999998755 6789999853 2110 0111110 0112345789
Q ss_pred EEeecCCCCCeEEEEEEeCCCC-----c---eeeeeeEEEEcCC-CCCcccceeccCCcceeecCCCceEEEEEeeCCCC
Q psy14540 65 NISSVRVEDSGIYQCTATNRVG-----S---QTHSADMRVYDAP-GQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDP 135 (291)
Q Consensus 65 ~i~~~~~~d~G~y~C~~~~~~~-----~---~~~~~~l~v~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p 135 (291)
.|.+++.+|+|.|.|.+.+..+ . ....+.|.|...+ ..| ......+. ..+.+|+.++|.|.+...+|
T Consensus 82 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P---~v~~~~~~-~~~~~g~~v~L~C~~~g~~P 157 (225)
T 1op3_H 82 QMHKMRVEDTAIYYCARKGSDRLSDNDPFDAWGPGTVVTVSPASTKGP---SVFPLAPS-SKSTSGGTAALGCLVKDYFP 157 (225)
T ss_dssp EECSCCGGGCEEEEEEEECCSSCCSSCCEEEECCCEEEEEESCSCBCC---EEEEECCC-TTCCCCCEEEEEEEEEEEBS
T ss_pred EECCCChhhCEEEEEEEecCCCccccccceeecCCEEEecccCCCcCC---eEEEeccc-ccccCCCcEEEEEEEEeEEC
Confidence 9999999999999999987653 1 2234677887632 112 11111111 12467999999999964457
Q ss_pred Cc-eeEEeECCEec
Q psy14540 136 PL-TISWLKNGLPI 148 (291)
Q Consensus 136 ~~-~~~W~~~~~~~ 148 (291)
.+ .+.|++++..+
T Consensus 158 ~p~~v~W~~~~~~~ 171 (225)
T 1op3_H 158 EPVTVSWNSGALTS 171 (225)
T ss_dssp SCCEEECCTTSCCT
T ss_pred CCeEEEEecCCCcC
Confidence 66 99999988653
No 213
>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B
Probab=99.83 E-value=5.3e-19 Score=130.41 Aligned_cols=136 Identities=19% Similarity=0.341 Sum_probs=87.4
Q ss_pred eeecceeeeecCCcEEEEEEecCCC--CCeeEEEECC--eecC--------------------CCeeEeceEEeeccceE
Q psy14540 6 IYKFIQQTLQPGPPVSLKCIATGNP--TPHISWKLDG--YPLA--------------------GDRFVMGQYMSLHGDVI 61 (291)
Q Consensus 6 ~~~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~--~~~~--------------------~~~~~~~~~~~~~~~~~ 61 (291)
+..|....+.+|++++|.|.+.+.+ ...+.|++.. .... .+++... .......
T Consensus 4 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~---~~~~~~~ 80 (221)
T 3m8o_H 4 LVESGGGLVQPGGSLKLSCAASGFTLSGSNVHWVRQASGKGLEWVGRIKRNAESDATAYAASMRGRLTIS---RDDSKNT 80 (221)
T ss_dssp EEEESCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECCGGGTTCEEECGGGTTSEEEE---EEGGGTE
T ss_pred EEccCCEEEcCCCCEEEEEEcccccccccEEEEEEECCCCCcEEEEEEcccccCcccccCccccccEEEE---ecCCCCE
Confidence 3456678899999999999998633 5789999832 1110 0111110 1112345
Q ss_pred EEEEEeecCCCCCeEEEEEEeCCC--CceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCC--c
Q psy14540 62 SHVNISSVRVEDSGIYQCTATNRV--GSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPP--L 137 (291)
Q Consensus 62 ~~l~i~~~~~~d~G~y~C~~~~~~--~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~--~ 137 (291)
++|.|.+++.+|+|.|.|.+.+.. ......+.+.|...+..++ ...... +... .+|+.++|.|.+..+.|. +
T Consensus 81 ~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~p-~v~~~~-~~~~--~~g~~v~L~C~~~~~~P~~~~ 156 (221)
T 3m8o_H 81 AFLQMNSLKSDDTAMYYCVIRGDVYNRQWGQGTLVTVSSASPTSP-KVFPLS-LCST--QPDGNVVIACLVQGFFPQEPL 156 (221)
T ss_dssp EEEEECSCCGGGCEEEEEEEESCTTCCCBBCCEEEEECSCCCBCC-EEEEEE-CCSC--CCTTEEEEEEEEEEEBSSCSE
T ss_pred EEEEECCCCHHHCEEEEEEEECCChhheECCCEEEEEecCCCCCC-eEEEec-Cccc--ccCCCEEEEEEEEeeECCCCE
Confidence 789999999999999999998753 2334455677763321111 111111 1111 689999999999654776 5
Q ss_pred eeEEeECCEec
Q psy14540 138 TISWLKNGLPI 148 (291)
Q Consensus 138 ~~~W~~~~~~~ 148 (291)
.+.|+++|..+
T Consensus 157 ~v~W~~~g~~~ 167 (221)
T 3m8o_H 157 SVTWSESGQGV 167 (221)
T ss_dssp EEEESCCSTTC
T ss_pred EEEEEECCEEC
Confidence 99999988766
No 214
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A
Probab=99.83 E-value=4.7e-20 Score=131.04 Aligned_cols=159 Identities=16% Similarity=0.297 Sum_probs=102.1
Q ss_pred cceeeeecCCcEEEEEEecC--CCCCeeEEEE--CCeecCC--C---eeEeceEEeeccceEEEEEEeecCCCCCeEEEE
Q psy14540 9 FIQQTLQPGPPVSLKCIATG--NPTPHISWKL--DGYPLAG--D---RFVMGQYMSLHGDVISHVNISSVRVEDSGIYQC 79 (291)
Q Consensus 9 ~~~~~v~~g~~v~l~C~~~~--~~~~~v~W~~--~~~~~~~--~---~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C 79 (291)
+..+...+|++++|.|.... .+.+.|.|++ ++..+.. . .+....+.....+ .+|.|.+++..|+|.|+|
T Consensus 6 ~~~v~g~~G~sv~L~~~~~~~~~~~~~i~W~k~~~~~~i~~~~~~~~~~~~~~R~~~~~n--gsL~I~~v~~~DsG~Y~c 83 (182)
T 1hnf_A 6 ALETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKN--GTLKIKHLKTDDQDIYKV 83 (182)
T ss_dssp CEEEEEETTSCEEECCTTCCCCSSEEEEEEEEGGGCCEEEEECGGGCEEESCTTEEECTT--SCEEECSCCGGGCEEEEE
T ss_pred ccEEEEecCCCEEEeCCcccccCcCCEEEEEECCCCcEEEEEeCccCCCCCCCeEEECCC--CCEEECCCChhhCEEEEE
Confidence 45567889999999995432 4567899999 8876520 0 0000111111122 269999999999999999
Q ss_pred EEeCCCCce--eeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEe
Q psy14540 80 TATNRVGSQ--THSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIR 157 (291)
Q Consensus 80 ~~~~~~~~~--~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~ 157 (291)
.+.+..+.. ...+.|.|......|. +.. .+..++|.|.+ .+.|.+.+.|+++|..+ ...
T Consensus 84 ~~~n~~g~~~~~~~~~L~V~~~~~~P~-----------i~~-~~~~v~L~C~~-~~~p~~~~~W~~~g~~l-~~~----- 144 (182)
T 1hnf_A 84 SIYDTKGKNVLEKIFDLKIQERVSKPK-----------ISW-TCINTTLTCEV-MNGTDPELNLYQDGKHL-KLS----- 144 (182)
T ss_dssp EEEETTSCEEEEEEEEEEEECCCCCCE-----------EEE-ETTTTEEEEEC-SSCSSCEEEEEESSCEE-EEE-----
T ss_pred EEEeCCCceeEEEEEEEEEcCcCCCCE-----------EEE-ccCcEEEEeEc-cCCCCCEEEEEECCEEC-CCC-----
Confidence 999877764 3456778876432221 111 23479999999 57778999999999877 110
Q ss_pred ccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCce
Q psy14540 158 SSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSS 194 (291)
Q Consensus 158 ~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~ 194 (291)
...+.+. ...+|.|.|+|.|.|..+......
T Consensus 145 -----~~~i~~~-~~~~d~G~Y~C~a~N~~~~~~s~~ 175 (182)
T 1hnf_A 145 -----QRVITHK-WTTSLSAKFKCTAGNKVSKESSVE 175 (182)
T ss_dssp -----SSCEEEE-CCSCEEEEEEEEEECSSCEEEEEE
T ss_pred -----CcEEEEe-cccCCCcEEEEEEEeCCCCcEEcc
Confidence 1112222 245677788888877776554443
No 215
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}
Probab=99.83 E-value=3.4e-19 Score=130.87 Aligned_cols=133 Identities=25% Similarity=0.332 Sum_probs=95.1
Q ss_pred CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEE
Q psy14540 2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTA 81 (291)
Q Consensus 2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~ 81 (291)
||.| ..|....+.+|+.+.|.|.+.+.|.+.+.|++++..+....... ...........|.|.+++..|+|.|+|.+
T Consensus 19 ~P~~-~~p~~~~~~~G~~v~l~C~~~g~p~p~i~W~~~g~~l~~~~~~~--~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a 95 (215)
T 3mtr_A 19 APKL-QGPVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSN--IKIYNTPSASYLEVTPDSENDFGNYNCTA 95 (215)
T ss_dssp EEEE-ECCSEEEECTTCCEEEEEEEEEESCCEEEEEETTEESSCSSSCS--EEEEEETTEEEEEECCCSGGGCEEEEEEE
T ss_pred CCcc-cCCceEEEECCCCEEEEEEEeecCCCEEEEEECCeECCCCCCcc--EEEecCCCeeEEEEecCChhhCeEEEEEE
Confidence 5666 56777889999999999999998889999999999887332110 01111223477999999999999999999
Q ss_pred eCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEee---CCCCCc--eeEEeECCE
Q psy14540 82 TNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVT---KGDPPL--TISWLKNGL 146 (291)
Q Consensus 82 ~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~---~~~p~~--~~~W~~~~~ 146 (291)
.|..|.....+.+.|...|..|.... ....+..+.|.|... .+.|.. .+.|.+++.
T Consensus 96 ~n~~g~~~~~~~l~v~~~P~~p~~~~---------~~~~~~~~~l~w~~p~~~~~~pi~~y~v~~~~~~~ 156 (215)
T 3mtr_A 96 VNRIGQESLEFILVQADTPSSPSIDQ---------VEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGE 156 (215)
T ss_dssp ECSSCEEEEEEEEEECCCCCCCEEEE---------EEEETTEEEEEEECCSCCCSSCEEEEEEEEEETTC
T ss_pred EECCCceEEEEEEEECCCCCCCcceE---------EEEecceEEEEEecCCccCCCceEEEEEEEEECCC
Confidence 99999988888888887775542111 123456788888732 233333 477777664
No 216
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4
Probab=99.83 E-value=2.9e-19 Score=127.73 Aligned_cols=134 Identities=19% Similarity=0.337 Sum_probs=103.1
Q ss_pred cCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCC
Q psy14540 111 SNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASD 190 (291)
Q Consensus 111 ~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~ 190 (291)
..+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+....+....... +
T Consensus 7 ~~p~~~~v~~G~~v~l~C~~-~~~p~~~v~W~k~~~~~~~~~~~~~~~~~--------------~--------------- 56 (182)
T 1rhf_A 7 GAPVKLTVSQGQPVKLNCSV-EGMEEPDIQWVKDGAVVQNLDQLYIPVSE--------------Q--------------- 56 (182)
T ss_dssp CCCEEEEEETTCCEEEEEEE-ESCSSCCEEEEETTEECCSSEEEEEEEET--------------T---------------
T ss_pred eCCcceEEeCCCcEEEEEEE-eCCCCCeEEEEECCeecCCCCceEEEecC--------------C---------------
Confidence 34455788999999999999 57888999999999887654322211110 0
Q ss_pred CCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCcc-CCceeEEEEecCCCCCCCCccc-ccCCceEEEEEEeecCCC
Q psy14540 191 NHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVAS-DNHSSNLRVNVPPHIGPFTFGE-LMEGVRTQVACVVQSGDL 268 (291)
Q Consensus 191 ~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~-~~~~~~l~v~~~p~~~~~~~~~-~~~g~~v~l~C~~~~~~p 268 (291)
.....|.|.++..+|+|.|+|.+.+..+. .+..+.|.|..+|.+...+... +.+|+.+.|.|.+ .+.|
T Consensus 57 ---------~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~-~g~p 126 (182)
T 1rhf_A 57 ---------HWIGFLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGVPFFTVEPKDLAVPPNAPFQLSCEA-VGPP 126 (182)
T ss_dssp ---------EEEEEEEESSCCGGGCEEEEEEESSCTTCEECCCEEEEEECSCEEEECCCCEEECTTCCEEEEEEE-ECSS
T ss_pred ---------CceEEEEEeecCcccCeEEEEEEEcCCCcEEEEEEEEEEecCCeEEecCcceEecCCCEEEEEeEe-cCCC
Confidence 01356888888888999999999887643 5677888998888877665555 8999999999999 8889
Q ss_pred Cc-eEEEEECCEEccCC
Q psy14540 269 PL-SLQWYKNGLAISQP 284 (291)
Q Consensus 269 ~~-~v~W~~~~~~l~~~ 284 (291)
.| .+.|+++|..+...
T Consensus 127 ~p~~v~W~~~~~~~~~~ 143 (182)
T 1rhf_A 127 EPVTIVWWRGTTKIGGP 143 (182)
T ss_dssp SCCEEEEEETTEECSCS
T ss_pred CCCEEEEEcCCeECCCC
Confidence 88 99999999998653
No 217
>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...
Probab=99.83 E-value=9.9e-20 Score=134.91 Aligned_cols=138 Identities=21% Similarity=0.287 Sum_probs=85.9
Q ss_pred eecceeeeecCCcEEEEEEecCCCC----CeeEEEEC--CeecC------C-CeeE-----eceEEee--ccceEEEEEE
Q psy14540 7 YKFIQQTLQPGPPVSLKCIATGNPT----PHISWKLD--GYPLA------G-DRFV-----MGQYMSL--HGDVISHVNI 66 (291)
Q Consensus 7 ~~~~~~~v~~g~~v~l~C~~~~~~~----~~v~W~~~--~~~~~------~-~~~~-----~~~~~~~--~~~~~~~l~i 66 (291)
..|....+.+|++++|.|.+.+.+. +.+.|+|. +..+. . .... ..+.... .....++|.|
T Consensus 5 ~qp~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I 84 (228)
T 3bae_H 5 KESGPGLLKPSQTLSLTCSFSGFSIRTSKVGVSWIRQPSGKGLEWLAHIYWDDDKRYNPSLESRLTISKDTSRDMVFMKI 84 (228)
T ss_dssp EEECCSEECTTCCEEEEEEEESSCHHHHCCEEEEEEEETTCCCEEEEEECTTSCEEECTTTGGGEEEEEETTTTEEEEEE
T ss_pred eCCCceeecCCCeEEEEEEEeCcccCCCceeEEEEEECCCCCeEEEEEEecCCceeeCcccCCcEEEEEcCCCCeEEEEE
Confidence 3467788999999999999987653 78999984 22210 0 0000 0111111 1223478999
Q ss_pred eecCCCCCeEEEEEEeCCCC------c---eeeeeeEEEEcCC-CCCcccceeccCCcceeecCCCceEEEEEeeCCCCC
Q psy14540 67 SSVRVEDSGIYQCTATNRVG------S---QTHSADMRVYDAP-GQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPP 136 (291)
Q Consensus 67 ~~~~~~d~G~y~C~~~~~~~------~---~~~~~~l~v~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~ 136 (291)
.+++.+|+|.|.|.+.+..+ . ....+.|.|...+ ..| ......+ ...+.+|+.++|.|.+...+|.
T Consensus 85 ~~v~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~~~~~L~V~~~~~~~P---~i~~~~~-~~~~~~g~~~~l~C~~~g~~P~ 160 (228)
T 3bae_H 85 TSVDTADTATYYCARRGFYGRKYEVNHFDYWGQGTTLTVSSAKTTAP---SVYPLAP-VCGDTTGSSVTLGCLVKGYFPE 160 (228)
T ss_dssp CSCCGGGCEEEEEEEEEESTTCTTSEEEEEECCCEEEEECSCCCBCC---EEEEECC------CCSEEEEEEEEEEEBSS
T ss_pred cCCCcccCEEEEEEEecCCCccccccceeeeCCcEEEEecCCCCCCC---EEEEecc-cccccCCCCEEEEEEEccEeCC
Confidence 99999999999999987543 1 1234677776422 111 1111111 1235689999999999544577
Q ss_pred c-eeEEeECCEec
Q psy14540 137 L-TISWLKNGLPI 148 (291)
Q Consensus 137 ~-~~~W~~~~~~~ 148 (291)
+ .+.|++++..+
T Consensus 161 p~~v~W~~~~~~~ 173 (228)
T 3bae_H 161 PVTLTWNSGSLSS 173 (228)
T ss_dssp CCEEEEGGGTCCT
T ss_pred CEEEEEeeCCccc
Confidence 7 99999988654
No 218
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A
Probab=99.82 E-value=2.8e-19 Score=131.01 Aligned_cols=133 Identities=24% Similarity=0.387 Sum_probs=95.6
Q ss_pred cCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccC-CCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCC
Q psy14540 111 SNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILS-DAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVAS 189 (291)
Q Consensus 111 ~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~-~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 189 (291)
..+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+.. ..+........+
T Consensus 11 ~~p~~~~v~~G~~v~l~C~~-~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~--------------------------- 62 (212)
T 2yd1_A 11 RKPQNQGVRVGGVASFYCAA-RGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGG--------------------------- 62 (212)
T ss_dssp ECCCCEEEETTSCEEEEEEE-ECSSCCEEEEEETTEECCTTSTTEEEEEETTT---------------------------
T ss_pred cCCCceEEecCCEEEEEEEE-ccCCCCeEEEEECCEECCCCcceeEEEEcCCC---------------------------
Confidence 34456788999999999999 6888899999999988752 233322211111
Q ss_pred CCCceEEEEeccceEEEEeeeec-CCCeeEEEEeeeCCcc-CCceeEEEEecC-------CCCCCCCccc-ccCCceEEE
Q psy14540 190 DNHSSNLRVNEYTSSLSIATLST-GHSGNYTCVASNTVAS-DNHSSNLRVNVP-------PHIGPFTFGE-LMEGVRTQV 259 (291)
Q Consensus 190 ~~~~~~~~~~~~~~~l~i~~~~~-~~~g~y~C~~~~~~~~-~~~~~~l~v~~~-------p~~~~~~~~~-~~~g~~v~l 259 (291)
...|.|.++.. +|+|.|+|.+.|..+. .+..+.|.|..+ |.+...+... +.+|+.++|
T Consensus 63 ------------~~~L~i~~v~~~~d~G~Y~C~~~n~~g~~~~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l 130 (212)
T 2yd1_A 63 ------------ISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLM 130 (212)
T ss_dssp ------------EEEEEESSCCTTTTCSEEEEEEECSSSCEEEEEEEEEEECTTCSCTTCCEEEECCCCEEEETTCCEEE
T ss_pred ------------eEEEEEEecCCCCcCceEEEEEEeCCCCeEEeeEEEEEecccCCCCCCCeeEeCCCceEeecCCeEEE
Confidence 23566666666 7777777777776665 566677777654 3443333333 788999999
Q ss_pred EEEeecCCCCceEEEEECCEEccCC
Q psy14540 260 ACVVQSGDLPLSLQWYKNGLAISQP 284 (291)
Q Consensus 260 ~C~~~~~~p~~~v~W~~~~~~l~~~ 284 (291)
.|.+ .+.|.+.|.|+++|..+...
T Consensus 131 ~C~~-~g~p~p~i~W~~~~~~~~~~ 154 (212)
T 2yd1_A 131 TCKA-IGNPTPNIYWIKNQTKVDMS 154 (212)
T ss_dssp CCEE-ECSSCCEEEEEETTEECCTT
T ss_pred EEEe-ccCCCCeEEEEECCeEcccC
Confidence 9999 88999999999999998653
No 219
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Probab=99.82 E-value=8.1e-19 Score=126.85 Aligned_cols=142 Identities=15% Similarity=0.310 Sum_probs=103.0
Q ss_pred cCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCC
Q psy14540 111 SNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASD 190 (291)
Q Consensus 111 ~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~ 190 (291)
..+....+.+|+.+.|.|.+..+.|.+.+.|++++..+....... ..+. ...+..+.|..
T Consensus 7 ~~p~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~g~~l~~~~~~~----------~~~~-~~~~~~~~~~~--------- 66 (195)
T 2c5d_C 7 GNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQ----------TQVP-LGEDEQDDWIV--------- 66 (195)
T ss_dssp ECCCCEEECTTCCEEEEEEEEEESSCCCCEEEETTEECCSCEEEE----------EEEE-CSSSTTSEEEE---------
T ss_pred cChhheEEecCCcEEEecccccCCCCcEEEEEECCEEcccCCCCc----------eEEE-Eccccccceee---------
Confidence 345567889999999999994378889999999998876542111 1111 11111111211
Q ss_pred CCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCcc-CCceeEEEEecCCCCCCCCccc-ccCCceEEEEEEeecCCC
Q psy14540 191 NHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVAS-DNHSSNLRVNVPPHIGPFTFGE-LMEGVRTQVACVVQSGDL 268 (291)
Q Consensus 191 ~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~-~~~~~~l~v~~~p~~~~~~~~~-~~~g~~v~l~C~~~~~~p 268 (291)
...|.|.++..+|+|.|+|.+.+..+. .+..+.|.|..+|.+...+... +.+|+.++|.|.+ .+.|
T Consensus 67 -----------~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~-~g~p 134 (195)
T 2c5d_C 67 -----------VSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPEDRTVAANTPFNLSCQA-QGPP 134 (195)
T ss_dssp -----------EEEEEESSCCSTTCEEEEEEEEETTEEEECCCEEEEECCSCEEEECCCCEEECTTCCEEEEEEE-ECSS
T ss_pred -----------ccEEEEEeccccCCcEEEEEEEeCCCceecccEEEEEecCCeEEcCCCcEEEcCCCEEEEEeEC-CCCC
Confidence 346888888888899999999887654 3455788888888776655544 8899999999999 8889
Q ss_pred Cc-eEEEEECCEEccCC
Q psy14540 269 PL-SLQWYKNGLAISQP 284 (291)
Q Consensus 269 ~~-~v~W~~~~~~l~~~ 284 (291)
.| .|.|+++|..+...
T Consensus 135 ~p~~v~W~~~~~~~~~~ 151 (195)
T 2c5d_C 135 EPVDLLWLQDAVPLATA 151 (195)
T ss_dssp CCCEEEEEESSCBSSSS
T ss_pred CCCEEEEEECCEeccCC
Confidence 88 99999999988653
No 220
>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*
Probab=99.82 E-value=1.6e-20 Score=136.04 Aligned_cols=142 Identities=16% Similarity=0.166 Sum_probs=98.2
Q ss_pred eeecCCCceEEEEEee--CCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCc
Q psy14540 116 IKVHSGDRAGVQCLVT--KGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHS 193 (291)
Q Consensus 116 ~~~~~g~~~~l~C~~~--~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~ 193 (291)
+.+..|+.++|.|... .+.|.+.+.|+|+|............. ...... +.....
T Consensus 3 Vta~~Ge~v~L~C~~~~v~~~p~~~V~W~k~g~~~~~~~~~~~~~-----~~~~~~------------------~~~~~~ 59 (203)
T 4fa8_A 3 VTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHH-----DVIFIE------------------WPFRGF 59 (203)
T ss_dssp CEEETTCCEEEEEECSSTTCSTTSEEEEEEEETTTEEEEEEEEET-----TEEEEC------------------GGGBTT
T ss_pred eEEEcCCCEEEEeeeeccCCCCCcEEEEEEcCCCcceEEEEecCC-----ceEEee------------------ccccce
Confidence 5678999999999531 578899999999875432110000000 000000 000111
Q ss_pred eEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCCCCCCCCccc-ccCCceEEEEEEeecCCCCceE
Q psy14540 194 SNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGPFTFGE-LMEGVRTQVACVVQSGDLPLSL 272 (291)
Q Consensus 194 ~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~-~~~g~~v~l~C~~~~~~p~~~v 272 (291)
..+........|.|.++..+|+|.|+|.|.|..+.....+.|.|..||.+...+... +.+|+.++|.|.+ .|.|.|.|
T Consensus 60 ~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~p~~~~~~~~~~~v~~g~~~~l~C~~-~G~P~P~v 138 (203)
T 4fa8_A 60 FDIHRSANTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTV-NAFPHPHV 138 (203)
T ss_dssp EEEEEETTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEEEEEEEEEECCSSCSCCEEEEEEE-EEESCCEE
T ss_pred EEEEEcCCEEEEEEccCCHHHCeEEEEEEEcCCCcEEEEEEEEecCCceeeecceeEEEcCCCEEEEEEEc-CCCCCCEE
Confidence 122223345689999999999999999999999888888999998888777665555 8999999999999 89999999
Q ss_pred EEEECCEEc
Q psy14540 273 QWYKNGLAI 281 (291)
Q Consensus 273 ~W~~~~~~l 281 (291)
+|++++..+
T Consensus 139 ~W~~~~~~~ 147 (203)
T 4fa8_A 139 QWLMPEGVE 147 (203)
T ss_dssp EECCC----
T ss_pred EEEECCeee
Confidence 999876544
No 221
>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A
Probab=99.82 E-value=3.2e-20 Score=144.91 Aligned_cols=182 Identities=15% Similarity=0.257 Sum_probs=107.8
Q ss_pred eeecceeeeecCCcEEEEEEecC-CCCC---eeEEEECC-eecCCCeeEeceEEeecc--ceEEEEEEeecCCCCCeEEE
Q psy14540 6 IYKFIQQTLQPGPPVSLKCIATG-NPTP---HISWKLDG-YPLAGDRFVMGQYMSLHG--DVISHVNISSVRVEDSGIYQ 78 (291)
Q Consensus 6 ~~~~~~~~v~~g~~v~l~C~~~~-~~~~---~v~W~~~~-~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~y~ 78 (291)
+..|....+.+|+.++|.|.+.+ .|.+ .|.|++++ ..+........ ....+ ...+.|.|.+++.+|+|.|+
T Consensus 117 ~~~p~~~~v~~G~~v~L~C~~~g~~P~p~~~~i~W~k~~g~~~~~~~~~~~--~~~~g~~~~~~~L~I~~~~~~D~G~Y~ 194 (323)
T 2wqr_A 117 LSRPSPFDLFIRKSPTITCLVVDLAPSKGTVQLTWSRASGKPVNHSTRKEE--KQRNGTLTVTSTLPVGTRDWIEGETYQ 194 (323)
T ss_dssp ECCCCHHHHHTSSCCEEEEEEEEECCCSSCCEEEEEETTCCCCCCCCCEEE--ECTTSCEEEEEEEECCHHHHHTTCCEE
T ss_pred EcCCCHHHhccCCeEEEEEEEeccCCCCCceEEEEEECCCcccccccCCCc--cCCCCCEEEEEEEEECHHHccCCCCEE
Confidence 34445556789999999999987 4555 89999964 44432111100 00011 13467999999999999999
Q ss_pred EEEeCCCCceeeeeeEEEEcC---CCCCcccceeccCCcceeecCCCceEEEEEeeCCCCC-ceeEEeECCEeccCCCce
Q psy14540 79 CTATNRVGSQTHSADMRVYDA---PGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPP-LTISWLKNGLPILSDAEI 154 (291)
Q Consensus 79 C~~~~~~~~~~~~~~l~v~~~---~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~-~~~~W~~~~~~~~~~~~~ 154 (291)
|.+.+..+.. ...+.|... ...| .... ...... ...|+.++|.|.+.+.+|. ..+.|+++|..+.....
T Consensus 195 C~a~n~~~~~--~~~~~v~~~~~~~~~P--~v~~-~~~~~~-~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~- 267 (323)
T 2wqr_A 195 CRVTHPHLPR--ALMRSTTKTSGPRAAP--EVYA-FATPEW-PGSRDKRTLACLIQNFMPEDISVQWLHNEVQLPDARH- 267 (323)
T ss_dssp EEEECTTSSS--CEEEEECCCCSCCBCC--EEEE-EECCCC-TTCTTEEEEEEEEEEEBSSCCEEEEEETTEECCGGGE-
T ss_pred EEEECCCCCC--CeeeEEEccCCCCCCC--EEEE-eCCChH-HhcCCcEEEEEEeeeeeCCCcEEEEEECCEECCCCce-
Confidence 9999865432 223444321 1111 1111 111111 1239999999999543554 48999999998754321
Q ss_pred EEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCcc
Q psy14540 155 TIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVAS 228 (291)
Q Consensus 155 ~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~ 228 (291)
... .......|.|.. .+.|.|..+..+|+|.|+|.|.|....
T Consensus 268 ~~~------------~~~~~~~g~~~~--------------------~s~L~i~~~~~~d~g~Y~C~a~n~~~~ 309 (323)
T 2wqr_A 268 STT------------QPRKTKGSGFFV--------------------FSRLEVTRAEWEQKDEFICRAVHEAAS 309 (323)
T ss_dssp EEC------------CCEECSSSSEEE--------------------EEEEEEEHHHHHHCCCEEEEEECTTST
T ss_pred eec------------CcccCCCCcEEE--------------------EEEEEEChHHccCCCEEEEEEEeCCCC
Confidence 100 001111233332 245777777778888888888887654
No 222
>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}
Probab=99.82 E-value=9.7e-20 Score=137.31 Aligned_cols=179 Identities=17% Similarity=0.218 Sum_probs=90.0
Q ss_pred cCCCCCeEEEEEEeCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCC-----CceeEEeE
Q psy14540 69 VRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDP-----PLTISWLK 143 (291)
Q Consensus 69 ~~~~d~G~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p-----~~~~~W~~ 143 (291)
++..|+|.|+|.+. |.......+.+...+ .....+..+.+.+|+.++|.|.+ .+.| .+.+.|++
T Consensus 11 v~~~dsg~Y~C~a~---g~~~~~~~~~~~~~~-------~~~~~p~~~~v~~G~~v~L~C~~-~~~~~~~~~~~~v~W~k 79 (254)
T 2c1o_A 11 VRPGTSVKLSCKAS---GYSFTNYWMNWLREL-------VMTQSPLTLSVTIGQPASISCKS-SQSLLYSNGKTYLNWLL 79 (254)
T ss_dssp ------------------------------CC-------CEEEECSEEEECTTSCEEEEEEE-SSCCBCSSSCBCEEEEE
T ss_pred ecCCccEEEEEcCc---hhhhhhhhhheeece-------eEEeCCceEEecCCCcEEEEeec-cCcccccCCCCceEEEE
Confidence 78899999999997 333333333332211 12233456789999999999999 5666 48999998
Q ss_pred CCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEee
Q psy14540 144 NGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVAS 223 (291)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~ 223 (291)
++.... .. +.+..... ... .....+.+........|.|.++..+|+|.|.|.|.
T Consensus 80 ~~~g~~--~~------------~~~~~~~~-----------~~~-~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~ 133 (254)
T 2c1o_A 80 QRPGQS--PK------------RLIYLVSK-----------LDS-GDPDRFTGSGSGTDFTLKISRVEAEDLGIYYCVQG 133 (254)
T ss_dssp ECTTSC--CE------------EEEETTTE-----------ECT-TCCTTEEEEEETTEEEEEESSCCGGGCSEEEEEEC
T ss_pred eCCCCC--ce------------EEEEeccc-----------cCC-CccceEEEecCCCEEEEEECcCCcccCEEEEEEEE
Confidence 431100 00 00000000 000 00011222222335579999999999999999998
Q ss_pred eCCcc-CCceeEEEEec---CCCCCCCCccc-ccCCceEEEEEEeecCCCC-ceEEEEECCEEccCC
Q psy14540 224 NTVAS-DNHSSNLRVNV---PPHIGPFTFGE-LMEGVRTQVACVVQSGDLP-LSLQWYKNGLAISQP 284 (291)
Q Consensus 224 ~~~~~-~~~~~~l~v~~---~p~~~~~~~~~-~~~g~~v~l~C~~~~~~p~-~~v~W~~~~~~l~~~ 284 (291)
|..+. ......+.|.. +|.+....... ...|+.++|.|.+.+.+|+ +.|.|+|||.++...
T Consensus 134 n~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~ 200 (254)
T 2c1o_A 134 SHFPPTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNG 200 (254)
T ss_dssp SSSSCEEBCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEESSSEECTT
T ss_pred cCcceEecCCEEEEECCCCCCCeeEeecCChhhccCCcEEEEEEEecccCCCcEEEEEECCCcccCc
Confidence 87532 22233555553 45555433322 4468899999999443555 579999999988665
No 223
>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus}
Probab=99.82 E-value=3.5e-20 Score=137.52 Aligned_cols=195 Identities=17% Similarity=0.243 Sum_probs=113.7
Q ss_pred CCcce-eecceeeeecCCcEEEEEEecC-CCC--CeeEEEECCeec-CCCeeEeceEEeecc--ceEEEEEEeecCCCCC
Q psy14540 2 HPQLI-YKFIQQTLQPGPPVSLKCIATG-NPT--PHISWKLDGYPL-AGDRFVMGQYMSLHG--DVISHVNISSVRVEDS 74 (291)
Q Consensus 2 ~p~~~-~~~~~~~v~~g~~v~l~C~~~~-~~~--~~v~W~~~~~~~-~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~ 74 (291)
+|.+. ..|....+.+|+.++|.|.+.+ .|. ..+.|+++|..+ ....... .....+ ...+.|.|.+++.+|.
T Consensus 12 ~P~v~~~~p~~~~v~~G~~v~L~C~~~g~~P~~p~~v~W~~~g~~~~~~~~~~~--~~~~~g~~~~~s~L~I~~~~~~D~ 89 (231)
T 2w59_A 12 PIQLYAIPPSPGELYISLDAKLRCLVVNLPSDSSLSVTWTREKSGNLRPDPMVL--QEHFNGTYSASSAVPVSTQDWLSG 89 (231)
T ss_dssp CCEEEEECCCHHHHHTSCCCEEEEEEEEESCCTTCEEEEECSSSSCCCCCCCEE--EECTTSCEEEEEEEECCHHHHHTT
T ss_pred CCEEEEeCcChhhcccCCceEEEEEEeCccCCCCeEEEEEcCCeeccccccccc--eECCCCcEEEEEEEEecchhccCC
Confidence 45554 5666667889999999999987 463 499999999876 3211100 000111 1346799999999999
Q ss_pred eEEEEEEeCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCC-CceeEEeECCEeccCCCc
Q psy14540 75 GIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDP-PLTISWLKNGLPILSDAE 153 (291)
Q Consensus 75 G~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p-~~~~~W~~~~~~~~~~~~ 153 (291)
|.|+|.+.+..+.. ...+.|................+....+ .+..++|.|.+.+.+| .+.+.|+++|..+.....
T Consensus 90 g~Y~C~~~~~~~~~--~~~~~v~~~~~~~~~P~v~v~~~~~~~~-~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~ 166 (231)
T 2w59_A 90 ERFTCTVQHEELPL--PLSKSVYRNTGPTTPPLIYPFAPHPEEL-SLSRVTLSCLVRGFRPRDIEIRWLRDHRAVPATEF 166 (231)
T ss_dssp CCEEEEEECTTCSS--CEEEEECCCCSCCBCCEEEEECCCGGGG-GSSEEEEEEEEEEEBSSCCEEEEEETTEECCGGGC
T ss_pred CEEEEEEEcCCCCC--ceEEEEecCCCCCcCCEEEEeCCCHHHh-ccCceEEEEEEEeccCCCcEEEEEECCEECCCccc
Confidence 99999999876542 3334443221000001111111111222 3557999999954455 479999999998865431
Q ss_pred eEEeccCCceEEEEEeeCCC----CCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccC
Q psy14540 154 ITIRSSGEYTSSLSIATLST----GHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASD 229 (291)
Q Consensus 154 ~~~~~~~~~~~~l~i~~~~~----~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~ 229 (291)
.... ........ .|.|.|.. .+.|.|.....+|+|.|+|.|.|.....
T Consensus 167 ~~~~--------~~~~~~~~~~~~~d~gt~~~--------------------~s~L~i~~~~~~~~g~YtC~v~n~~l~~ 218 (231)
T 2w59_A 167 VTTA--------VLPEERTANGAGGDGDTFFV--------------------YSKMSVETAKWNGGTVFACMAVHEALPM 218 (231)
T ss_dssp EECC--------CEECCTTSCC---CCCCEEE--------------------EEEEEEEHHHHHTTCCEEEEEECTTSTT
T ss_pred ccCc--------cccCcccccccCCCCCeEEE--------------------EEEEEEeHHHcCCCCcEEEEEEcCCCCC
Confidence 1100 00000000 12244433 2457777777778888888888776443
No 224
>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D*
Probab=99.82 E-value=5e-20 Score=137.09 Aligned_cols=186 Identities=14% Similarity=0.213 Sum_probs=108.7
Q ss_pred CCcceeecceee--eecCCcEEEEEEecCC---CCC-eeEEEECCeecCCCeeEeceEEeec--cceEEEEEEeecCCCC
Q psy14540 2 HPQLIYKFIQQT--LQPGPPVSLKCIATGN---PTP-HISWKLDGYPLAGDRFVMGQYMSLH--GDVISHVNISSVRVED 73 (291)
Q Consensus 2 ~p~~~~~~~~~~--v~~g~~v~l~C~~~~~---~~~-~v~W~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~i~~~~~~d 73 (291)
+|.+...+.... +.+|++++|.|.+.+. |.+ .|.|++++..+........ ..... ....+.|.|.+++.+|
T Consensus 15 ~P~v~~~pp~~~~~v~~G~~v~L~C~~~g~~~~P~~~~v~W~k~~~~~~~~~~~~~-~~~~~~~~~~~s~L~I~~~~~~D 93 (239)
T 1i1c_A 15 VSSVFIFPPKTKDVLGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAP-EKQSNSTLRSVSELPIVERDWLN 93 (239)
T ss_dssp --CEEEECCCHHHHTTSSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEECCC-EECTTSCEEEEEEEECCHHHHHT
T ss_pred CCEEEEECCChHHhcccCCcEEEEEEEecCccCCCCCEEEEEECCccccCcccccc-eEcCCCcEEEEEEEEEEhhHccC
Confidence 355544444444 7899999999999875 655 8999998866542211100 00011 1234679999999999
Q ss_pred CeEEEEEEeCCCCceeeeeeEEE-EcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCC-ceeEEeECCEeccCC
Q psy14540 74 SGIYQCTATNRVGSQTHSADMRV-YDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPP-LTISWLKNGLPILSD 151 (291)
Q Consensus 74 ~G~y~C~~~~~~~~~~~~~~l~v-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~-~~~~W~~~~~~~~~~ 151 (291)
+|.|+|.+.+..+.......+.. ......| .......... ...|+.++|.|.+.+.+|. ..+.|+++|..+...
T Consensus 94 ~g~Y~C~~~~~~~~~~~~~~v~~~~~~~~~P---~v~v~~~~~~-~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~ 169 (239)
T 1i1c_A 94 GKTFKCKVNSGAFPAPIEKSISKPEGTPRGP---QVYTMAPPKE-EMTQSQVSITCMVKGFYPPDIYTEWKMNGQPQENY 169 (239)
T ss_dssp TCCEEEEEECSSSSSCEEEEECCCSSCCBCC---EEEEECCCGG-GGGSSEEEEEEEEEEEBSSCCEEEEEETTEECSSE
T ss_pred CCeEEEEEecccCCCCcEEEEecCCCCCcCC---EEEEECCChH-HhcCCcEEEEEEEeeeECCCeEEEEEECCEECCCc
Confidence 99999999987664322212211 0111111 1111111111 2347889999999544665 589999999887421
Q ss_pred CceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCc
Q psy14540 152 AEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVA 227 (291)
Q Consensus 152 ~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~ 227 (291)
.. ........|.|.. .+.|.+.....+++|.|+|.|.|...
T Consensus 170 ~~---------------~~~~~~~dgt~~~--------------------~s~l~v~~~~~~~~g~YtC~v~n~~l 210 (239)
T 1i1c_A 170 KN---------------TPPTMDTDGSYFL--------------------YSKLNVKKETWQQGNTFTCSVLHEGL 210 (239)
T ss_dssp EE---------------CCCEECTTSCEEE--------------------EEEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred ee---------------cCceECCCCCEEE--------------------EEEEEEChhhcCCCCEEEEEEECCCC
Confidence 10 0011123344543 23455655556678999999988764
No 225
>1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*
Probab=99.82 E-value=4.5e-19 Score=130.14 Aligned_cols=138 Identities=20% Similarity=0.284 Sum_probs=87.8
Q ss_pred eecceeeeecCCcEEEEEEecCCC--CCeeEEEECC--eecC------C-Cee-----EeceEEee--ccceEEEEEEee
Q psy14540 7 YKFIQQTLQPGPPVSLKCIATGNP--TPHISWKLDG--YPLA------G-DRF-----VMGQYMSL--HGDVISHVNISS 68 (291)
Q Consensus 7 ~~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~--~~~~------~-~~~-----~~~~~~~~--~~~~~~~l~i~~ 68 (291)
..|....+.+|++++|.|.+.+.+ .+.+.|+++. .... . ... ...+.... .....++|.|.+
T Consensus 5 ~qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~ 84 (215)
T 1c5d_H 5 LESGPGLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNS 84 (215)
T ss_dssp EEECCCEECTTCCEEEEEEECSSCTTSCCEEEEEECTTSCCEEEEEECTTCCEECCTTTGGGEEEEEETTTTEEEEEESS
T ss_pred EcCCCeeecCCCcEEEEEEECCCcCCCCeEEEEEECCCCCcEEEEEEcCCCCcEECCcccCcEEEEeeCCCceEEEEECC
Confidence 346778899999999999998743 5789999853 2110 0 000 00111111 123457899999
Q ss_pred cCCCCCeEEEEEEeCCCC---ceeeeeeEEEEcCC-CCCcccceeccCCcceeecCCCceEEEEEeeCCCCCc-eeEEeE
Q psy14540 69 VRVEDSGIYQCTATNRVG---SQTHSADMRVYDAP-GQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPL-TISWLK 143 (291)
Q Consensus 69 ~~~~d~G~y~C~~~~~~~---~~~~~~~l~v~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~ 143 (291)
++.+|+|.|.|.+.+..+ .....+.|.|...+ ..| ......+. ..+.+|+.++|.|.+...+|.+ .+.|++
T Consensus 85 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P---~i~~~~~~-~~~~~g~~v~L~C~~~g~~P~p~~v~W~~ 160 (215)
T 1c5d_H 85 LQTEDTAIYFCTREDGWNYFDYWGPGTMVTVSSAQTTAP---SVYPLAPG-CGDTTSSTVTLGCLVKGYFPEPVTVTWNS 160 (215)
T ss_dssp CCGGGCEEEEEEECCSSSCSCCBCCCEEEEECSSCCBCC---CEEEECCC-SSCCCCSSEEEEEEEEEEBSSCCEEEEGG
T ss_pred CCcccCEEEEEEEecCCcccceEcCCEEEEecCCCCCCC---eEEeccCC-hhhccCCcEEEEEEEeeeEcCCcEEEEcc
Confidence 999999999999987542 12334677776422 112 11111111 2346899999999996445877 999999
Q ss_pred CCEec
Q psy14540 144 NGLPI 148 (291)
Q Consensus 144 ~~~~~ 148 (291)
++..+
T Consensus 161 ~g~~~ 165 (215)
T 1c5d_H 161 GALSS 165 (215)
T ss_dssp GTTCC
T ss_pred CCccC
Confidence 88654
No 226
>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O
Probab=99.82 E-value=7.7e-20 Score=118.06 Aligned_cols=95 Identities=25% Similarity=0.487 Sum_probs=80.5
Q ss_pred CCCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecC-CCeeEeceEEeeccceEEEEEEeecCCCCCeEEEE
Q psy14540 1 SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLA-GDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQC 79 (291)
Q Consensus 1 s~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C 79 (291)
+||.|+..|.++.+.+|+.+.|.|.+.+.|.+.|.|+|+|..+. ..++.+. .....++|.|.+++.+|+|.|+|
T Consensus 12 ~pP~f~~~p~~~~v~~G~~~~l~C~~~G~P~p~v~W~k~g~~l~~~~~~~~~-----~~~~~~~L~I~~v~~~D~G~Y~C 86 (107)
T 3knb_B 12 SPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFP-----ADGAEHGLLLTAALPTDAGVYVC 86 (107)
T ss_dssp EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEECC-----EETTEEEEEESSCCGGGCEEEEE
T ss_pred CCCEEEeCCCcEEEeCCCcEEEEEEEEEecCCEEEEEECcccccceeeEEEe-----ecCceEEEEEecCChhhCEEEEE
Confidence 37899999999999999999999999999999999999999987 4444332 23345779999999999999999
Q ss_pred EEeCCCCceeeeeeEEEEcCC
Q psy14540 80 TATNRVGSQTHSADMRVYDAP 100 (291)
Q Consensus 80 ~~~~~~~~~~~~~~l~v~~~~ 100 (291)
.+.|..|.....+.|.|..+|
T Consensus 87 ~a~N~~G~~~~~~~l~V~~pP 107 (107)
T 3knb_B 87 RARNAAGEAYAAAAVTVLEPP 107 (107)
T ss_dssp EEEETTEEEEEEEEEEEEC--
T ss_pred EEEECCCEEEEEEEEEEEcCC
Confidence 999999998888899887643
No 227
>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...
Probab=99.81 E-value=3.6e-20 Score=135.22 Aligned_cols=185 Identities=14% Similarity=0.255 Sum_probs=102.2
Q ss_pred Ccceeecceeee--ecCCcEEEEEEecCCC----CCeeEEEECCeecCCCeeEeceEEeeccc--eEEEEEEeecCCCCC
Q psy14540 3 PQLIYKFIQQTL--QPGPPVSLKCIATGNP----TPHISWKLDGYPLAGDRFVMGQYMSLHGD--VISHVNISSVRVEDS 74 (291)
Q Consensus 3 p~~~~~~~~~~v--~~g~~v~l~C~~~~~~----~~~v~W~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~ 74 (291)
|.+...|....+ .+|++++|.|.+.+.+ ...|.|+|++..+....... ......+. ....|.|......|+
T Consensus 2 P~v~~~pps~~~~~~~G~~v~L~C~~~g~~p~~~~~~v~W~k~~~~~~~~~~~~-~~~~~~g~~~~~~~l~i~~~d~~d~ 80 (207)
T 1l6x_A 2 PSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKP-REEQYNSTYRVVSVLTVLHQDWLNG 80 (207)
T ss_dssp CEEEEECCCHHHHHCTTSCCEEEEEEEEECSSSCCCEEEEEETTEEECCCEECC-CEECTTSCEEEEEEEECCHHHHHTT
T ss_pred CeEEEeCcChHHheecCCceEEEEEEecccCCCCCeEEEEEECCccccCcccCC-ceeccCCcEEEEEEEEEEHHHccCC
Confidence 555555544434 7999999999998743 35899999998765322111 01111111 123344444445569
Q ss_pred eEEEEEEeCCCCceeeeeeEEEE-cCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCC-ceeEEeECCEeccCCC
Q psy14540 75 GIYQCTATNRVGSQTHSADMRVY-DAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPP-LTISWLKNGLPILSDA 152 (291)
Q Consensus 75 G~y~C~~~~~~~~~~~~~~l~v~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~-~~~~W~~~~~~~~~~~ 152 (291)
|.|+|.+.+..+.......+.+. .....| ......+....+ .|..++|.|.+.+.+|. +.+.|+++|..+....
T Consensus 81 g~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P---~v~~~~~~~~~~-~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~ 156 (207)
T 1l6x_A 81 KEYKCKVSNKALPAPIEKTISKAKGQPREP---QVYTLPPSRDEL-TKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYK 156 (207)
T ss_dssp CCEEEEEECTTSSSCEEEEECCCCSCCBCC---EEEEECCCGGGG-GSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEE
T ss_pred ceEEEEEEcCcCCcceEEEeccCCCCCcCC---EEEEECCChHHh-cCCcEEEEEEEeCeECCCeEEEEEECCeeccCcc
Confidence 99999999876653222222110 111111 111112221223 45669999999544565 4999999998764211
Q ss_pred ceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCc
Q psy14540 153 EITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVA 227 (291)
Q Consensus 153 ~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~ 227 (291)
. ........|.|.. ...|.+.....+|+|.|+|.|.|...
T Consensus 157 ~---------------~~~~~~~~gt~~~--------------------~s~l~i~~~~~~~~g~YtC~a~n~~l 196 (207)
T 1l6x_A 157 T---------------TPPVLDSDGSFFL--------------------YSKLTVDKSRWQQGNVFSCSVMHEAL 196 (207)
T ss_dssp E---------------CCCEECTTSCEEE--------------------EEEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred c---------------cCceECCCCCEEE--------------------EEEEEECHHHcCCCCEEEEEEEcCCc
Confidence 0 0011122334432 23455555556678888888888763
No 228
>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}
Probab=99.81 E-value=1.2e-18 Score=133.72 Aligned_cols=134 Identities=18% Similarity=0.335 Sum_probs=86.4
Q ss_pred eeecceeeeecCCcEEEEEEecCCC--CCeeEEEECC--eecC------------------CCeeEeceEEeeccceEEE
Q psy14540 6 IYKFIQQTLQPGPPVSLKCIATGNP--TPHISWKLDG--YPLA------------------GDRFVMGQYMSLHGDVISH 63 (291)
Q Consensus 6 ~~~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~--~~~~------------------~~~~~~~~~~~~~~~~~~~ 63 (291)
...|....+.+|++++|.|.+.+.+ .+.+.|+++. ..+. ..++.. ........++
T Consensus 26 v~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~---~~~~~~~~~s 102 (291)
T 2gki_A 26 LQQSGPELVKPGASVKMSCKASGYTFTSYVMHWVKQKPGQGLEWIGYINPYNDGTKYNEKFKGKATL---TSDKSSSTAY 102 (291)
T ss_dssp EEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGBTTBCE---EEEGGGTEEE
T ss_pred EEcCCcEEecCCCCEEEEEeccCCcccccEEEEEEECCCCCcEEEEEEecCCCccccCcccCCCEEE---EEeCCCCEEE
Confidence 3456678899999999999998755 5789999953 1110 011110 0111234578
Q ss_pred EEEeecCCCCCeEEEEEEeCCC-Cc----eeeeeeEEEEcC-----------CCCCcccceeccCCcceeecCCCceEEE
Q psy14540 64 VNISSVRVEDSGIYQCTATNRV-GS----QTHSADMRVYDA-----------PGQPQDVKLVTSNSRSIKVHSGDRAGVQ 127 (291)
Q Consensus 64 l~i~~~~~~d~G~y~C~~~~~~-~~----~~~~~~l~v~~~-----------~~~~~~~~~~~~~~~~~~~~~g~~~~l~ 127 (291)
|+|.+++.+|+|.|.|.+.+.. +. ....+.|.|... +.. ........+....+.+|+.++|.
T Consensus 103 L~I~~v~~~DsG~Y~C~~~~~~~g~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~--~~~~v~~~p~~~~v~~G~~v~L~ 180 (291)
T 2gki_A 103 MELSSLTSEDSAVYYCARGAYKRGYAMDYWGQGTSVTVSSRGGGGSGGGGSGGGG--SDLVMSQSPSSLAVSAGEKVTMS 180 (291)
T ss_dssp EEECSCCGGGCEEEEEEEECGGGTTCEEEECCCEEEEECC------------------CCCEECSCSEEEEETTSCEEEE
T ss_pred EEECcCCHHHCEEEEEEEeccccccccceeCCCcEEEEecCCccccccccCCCCC--ccceEEcCCCEEEEcCCCcEEEE
Confidence 9999999999999999998653 11 122346666651 100 01112233445678899999999
Q ss_pred EEeeCCCCCc------eeEEeECC
Q psy14540 128 CLVTKGDPPL------TISWLKNG 145 (291)
Q Consensus 128 C~~~~~~p~~------~~~W~~~~ 145 (291)
|.+ .+.+.+ .+.|+++.
T Consensus 181 C~~-~~~~~~~~~~~~~v~W~k~~ 203 (291)
T 2gki_A 181 CKS-SQSLFNSRTRKNYLAWYQQK 203 (291)
T ss_dssp EEE-SSCCEETTTTEECEEEEEEC
T ss_pred EEc-CCccccccccceeEEEEEEC
Confidence 999 566654 89999963
No 229
>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H
Probab=99.81 E-value=1.1e-18 Score=129.54 Aligned_cols=140 Identities=21% Similarity=0.217 Sum_probs=84.7
Q ss_pred eecceeeeecCCcEEEEEEecCCC--CCeeEEEECC--eecC------C-CeeE-----eceEEee--ccceEEEEEEee
Q psy14540 7 YKFIQQTLQPGPPVSLKCIATGNP--TPHISWKLDG--YPLA------G-DRFV-----MGQYMSL--HGDVISHVNISS 68 (291)
Q Consensus 7 ~~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~--~~~~------~-~~~~-----~~~~~~~--~~~~~~~l~i~~ 68 (291)
..|....+.+|++++|.|.+.+.+ ...+.|++.. .... . .... ..+.... .....++|.|.+
T Consensus 5 ~qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~ 84 (232)
T 1dn0_B 5 QQWGAGLLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSS 84 (232)
T ss_dssp EEECCCEECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECS
T ss_pred ECCCCEEEeCCCcEEEEEEEccccCCCceEEEEEeCCCCCeEEEEEEecCCceeeCCccCCeEEEEEeCCCCEEEEEECC
Confidence 446667899999999999998653 5789999842 2110 0 0000 0111111 123457899999
Q ss_pred cCCCCCeEEEEEEeCCCC------ceeeeeeEEEEcCC-CCCcccceeccCCcceeecCC-CceEEEEEeeCCCCCc-ee
Q psy14540 69 VRVEDSGIYQCTATNRVG------SQTHSADMRVYDAP-GQPQDVKLVTSNSRSIKVHSG-DRAGVQCLVTKGDPPL-TI 139 (291)
Q Consensus 69 ~~~~d~G~y~C~~~~~~~------~~~~~~~l~v~~~~-~~~~~~~~~~~~~~~~~~~~g-~~~~l~C~~~~~~p~~-~~ 139 (291)
++.+|+|.|.|.+.+..+ .....+.|.|...+ ..| .... ..+. ..+..| +.++|.|.+...+|.+ .+
T Consensus 85 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P--~v~~-~~p~-~~~~~g~~~v~L~C~~~g~~P~p~~v 160 (232)
T 1dn0_B 85 VTAADTAVYYCARPPHDTSGHYWNYWGQGTLVTVSSGSASAP--TLFP-LVSC-ENSPSDTSSVAVGCLAQDFLPDSITF 160 (232)
T ss_dssp CCGGGCEEEEEEECSSTTSCSCCSEECCCEEEEECSSCCBCC--EEEE-EECC-------CCSEEEEEEEEEEBSSCCEE
T ss_pred CCcccCEEEEEEEecCCcCCchhhhcccceEEEEccCCCCCC--ceEE-eccc-cccCCCCCcEEEEEEEEEEeCCCeEE
Confidence 999999999999983211 12234577777532 112 1111 1111 224478 9999999996555776 99
Q ss_pred EEeE-CCEeccC
Q psy14540 140 SWLK-NGLPILS 150 (291)
Q Consensus 140 ~W~~-~~~~~~~ 150 (291)
.|++ +|..+..
T Consensus 161 ~W~~~~g~~l~~ 172 (232)
T 1dn0_B 161 SWKYKNNSDISS 172 (232)
T ss_dssp EEEETTSCEECC
T ss_pred EEEcCCCCceee
Confidence 9999 8877643
No 230
>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus}
Probab=99.81 E-value=3e-19 Score=134.74 Aligned_cols=140 Identities=19% Similarity=0.277 Sum_probs=87.6
Q ss_pred eeecceeeeecCCcEEEEEEecCCC--CCeeEEEECC--eecC-----C---CeeE-----eceEEee--ccceEEEEEE
Q psy14540 6 IYKFIQQTLQPGPPVSLKCIATGNP--TPHISWKLDG--YPLA-----G---DRFV-----MGQYMSL--HGDVISHVNI 66 (291)
Q Consensus 6 ~~~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~--~~~~-----~---~~~~-----~~~~~~~--~~~~~~~l~i 66 (291)
...|....+.+|++++|.|.+.+.+ .+.+.|+|+. ..+. . .... ..+.... ......+|+|
T Consensus 10 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I 89 (261)
T 2xqy_G 10 LQQPGAELVKPGASVKMSCKASGYSFTSYWMNWVKQRPGRGLEWIGRIDPSDNETHYNQDFKDKVTLTVDKSSSTVYIQL 89 (261)
T ss_dssp EECCSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEE
T ss_pred EECCCCEEEcCCCCEEEEEEeCCcccCCceEEEEEeCCCCCcEEEEEEecCCCceeeCCccCCcEEEEecCCCCEEEEEE
Confidence 3456778899999999999998755 5789999863 2110 0 0000 0011111 1234578999
Q ss_pred eecCCCCCeEEEEEEeCCCC---ceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCc-eeEEe
Q psy14540 67 SSVRVEDSGIYQCTATNRVG---SQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPL-TISWL 142 (291)
Q Consensus 67 ~~~~~~d~G~y~C~~~~~~~---~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~ 142 (291)
.+++.+|+|.|.|.+.+..+ .....+.|.|...+..++ ......+. ..+.+|+.++|.|.+...+|.+ .+.|+
T Consensus 90 ~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P--~v~~~~p~-~~v~~g~~v~L~C~~~g~~P~~i~v~W~ 166 (261)
T 2xqy_G 90 SSLTSEDSAVYYCGRLGYVYGFDYWGQGTTLTVSSAKTTAP--SVYPLAPV-CGDTTGSSVTLGCLVKGYFPEPVTLTWN 166 (261)
T ss_dssp CSCCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCC--EEEEECCC-CC--CCSEEEEEEEEEEEBSSCCEEEEG
T ss_pred cCCCcccCeEEEEEEecCCCcceEECCCEEEEEccCCCCCC--eEEEeCCC-ccccCCCcEEEEEEEEeEeCCCCEEEEe
Confidence 99999999999999987532 122345677765221111 11111111 2356799999999995445766 99999
Q ss_pred ECCEec
Q psy14540 143 KNGLPI 148 (291)
Q Consensus 143 ~~~~~~ 148 (291)
+++..+
T Consensus 167 k~g~~~ 172 (261)
T 2xqy_G 167 SGSLSS 172 (261)
T ss_dssp GGTCCT
T ss_pred cCCCcC
Confidence 998764
No 231
>3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H
Probab=99.81 E-value=1.9e-19 Score=135.55 Aligned_cols=135 Identities=20% Similarity=0.306 Sum_probs=84.3
Q ss_pred eecceeeeecCCcEEEEEEecC--CCCCeeEEEECC--ee---c---C------------CCeeEeceEEeeccceEEEE
Q psy14540 7 YKFIQQTLQPGPPVSLKCIATG--NPTPHISWKLDG--YP---L---A------------GDRFVMGQYMSLHGDVISHV 64 (291)
Q Consensus 7 ~~~~~~~v~~g~~v~l~C~~~~--~~~~~v~W~~~~--~~---~---~------------~~~~~~~~~~~~~~~~~~~l 64 (291)
..|..+.+.+|++++|.|.+.+ .+...+.|+|.. .. + . .+++.. ........++|
T Consensus 5 ~~p~~v~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~---~~~~~~~~~sL 81 (253)
T 3liz_H 5 VESGGGLVQPGGSLKLSCAASGFTFSSFAMSWGRQTPDKRLELVATINSNGASTYYPDTVKGRFTI---SRDNAKNTLFL 81 (253)
T ss_dssp EEECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEECCTTTTTTCEE---EEEGGGTEEEE
T ss_pred EcCCCEEECCCCcEEEEEEeeCccccCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEE---EEeCCCCEEEE
Confidence 4566788999999999999976 235679999842 11 1 0 011111 11122356779
Q ss_pred EEeecCCCCCeEEEEEEeCCC----CceeeeeeEEEEc-CCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCc-e
Q psy14540 65 NISSVRVEDSGIYQCTATNRV----GSQTHSADMRVYD-APGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPL-T 138 (291)
Q Consensus 65 ~i~~~~~~d~G~y~C~~~~~~----~~~~~~~~l~v~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~ 138 (291)
+|.+++.+|+|.|.|.+.+.. ......+.|.|.. ....| ... .......+..|+.++|.|.+.+++|.+ .
T Consensus 82 ~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P---~i~-~~~~~~~~~~g~~v~L~C~~~g~~P~~~~ 157 (253)
T 3liz_H 82 QMSSLKSEDTAMYYCTRDPAGRAWFAYWGQGTLVTVSAAKTTPP---SVY-PLAPGSAAQTNSMVTLGCLVKGYFPEPVT 157 (253)
T ss_dssp EECSCCGGGCEEEEEEECCBTTTBCCEECCCEEEEECSSCCBCC---EEE-EECC------CCEEEEEEEEEEEBSSCCE
T ss_pred EECCCChhhCEEEEEEEecCCcceeeEECCCEEEEEeccCCCCC---eEE-EecCCcccCCCCcEEEEEEEeeEeCCCeE
Confidence 999999999999999998642 2234445677763 22222 111 111223455799999999996547766 8
Q ss_pred eEEeECCEec
Q psy14540 139 ISWLKNGLPI 148 (291)
Q Consensus 139 ~~W~~~~~~~ 148 (291)
+.|++++..+
T Consensus 158 v~W~~~~~~~ 167 (253)
T 3liz_H 158 VTWNSGSLSS 167 (253)
T ss_dssp EEEGGGTBCT
T ss_pred EEEEeCCeec
Confidence 9999988643
No 232
>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}
Probab=99.81 E-value=1.8e-18 Score=132.06 Aligned_cols=137 Identities=18% Similarity=0.281 Sum_probs=87.2
Q ss_pred CcceeecceeeeecCCcEEEEEEecCC--CCCeeEEEECC--eecC-----C-------------CeeEeceEEeeccce
Q psy14540 3 PQLIYKFIQQTLQPGPPVSLKCIATGN--PTPHISWKLDG--YPLA-----G-------------DRFVMGQYMSLHGDV 60 (291)
Q Consensus 3 p~~~~~~~~~~v~~g~~v~l~C~~~~~--~~~~v~W~~~~--~~~~-----~-------------~~~~~~~~~~~~~~~ 60 (291)
+.+.. |....+.+|++++|.|.+.+. +.+.+.|++.. .... . .++.. .......
T Consensus 2 ~~v~q-p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~---~~~~~~~ 77 (280)
T 3fku_X 2 VQLVQ-SGAEVKKPGSSVKVSCTSSEVTFSSFAISWVRQAPGQGLEWLGGISPMFGTPNYAQKFQGRVTI---TADQSTR 77 (280)
T ss_dssp CCEEC-CCCCEECTTCCEEEEEEECCSCCTTSCEEECCBCSSSCCCCCEEECTTTCCEEECGGGTTTCEE---EEETTTT
T ss_pred CeEEc-CCCEEECCCCcEEEEEEeeccCCCCeEEEEEEeCCCCCCEEEEEEeccCCccccCcccCCcEEE---EEeCCCC
Confidence 44556 888899999999999999864 56789999842 1111 0 01111 0112334
Q ss_pred EEEEEEeecCCCCCeEEEEEEeCC---------CCceeeeeeEEEEc-CCCC-------CcccceeccCCcceeecCCCc
Q psy14540 61 ISHVNISSVRVEDSGIYQCTATNR---------VGSQTHSADMRVYD-APGQ-------PQDVKLVTSNSRSIKVHSGDR 123 (291)
Q Consensus 61 ~~~l~i~~~~~~d~G~y~C~~~~~---------~~~~~~~~~l~v~~-~~~~-------~~~~~~~~~~~~~~~~~~g~~ 123 (291)
.++|.|.+++.+|+|.|.|.+.+. .........|.|.. .... ..........+. ..+.+|+.
T Consensus 78 ~~sL~I~~v~~~DsG~Y~C~~~~~~~~~g~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~v~~~p~-~~v~~G~~ 156 (280)
T 3fku_X 78 TAYMDLRSLRSEDTAVYYCARSPSYICSGGTCVFDHWGQGTLVTVSSGGGGSGGGGSGGGGIQPGLTQPPS-VSKGLRQT 156 (280)
T ss_dssp EEEEEECSCCSTTCEECCEEECSSSSSSSTTCCCCEECCCCEEEECC--------------CCCSBBCCSE-EEECTTCC
T ss_pred EEEEEECCCChhhCEEEEEEEecCCccccccccccEECCCEEEEEcCCCCccCCCCCCceEeeeEEEeCCc-EEEecCCC
Confidence 578999999999999999999875 12233445666655 1100 000111223333 78899999
Q ss_pred eEEEEEeeCCCC-CceeEEeEC
Q psy14540 124 AGVQCLVTKGDP-PLTISWLKN 144 (291)
Q Consensus 124 ~~l~C~~~~~~p-~~~~~W~~~ 144 (291)
++|.|.+....+ .+.+.|++.
T Consensus 157 v~L~C~~~~~~~~~~~v~W~r~ 178 (280)
T 3fku_X 157 ATLTCTGNSNNVGNQGAAWLQQ 178 (280)
T ss_dssp EEEEEECCCCCCCTTCCEEEEE
T ss_pred EEEEEEecCCCCCCceEEEEEE
Confidence 999999943244 479999983
No 233
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Probab=99.81 E-value=3.8e-19 Score=128.72 Aligned_cols=131 Identities=21% Similarity=0.403 Sum_probs=98.2
Q ss_pred CCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCC
Q psy14540 112 NSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDN 191 (291)
Q Consensus 112 ~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~ 191 (291)
.+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+....+......+
T Consensus 13 ~~~~~~v~~G~~v~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~------------------------------- 60 (197)
T 3lcy_A 13 EMKDVTTKLGEAAQLSCQI-VGRPLPDIKWYRFGKELIQSRKYKMSSDG------------------------------- 60 (197)
T ss_dssp CCCCEEEETTSEEEEEEEE-EEESCCEEEEEETTEEECCCSSEEEEESS-------------------------------
T ss_pred cCCceEEeCCCcEEEEEEE-ecCCCCEEEEEECCEECCCCccEEEEeCC-------------------------------
Confidence 3455788899999999999 57888999999999888655444332211
Q ss_pred CceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCCCCCCC----CcccccCCceEEEEEEeecCC
Q psy14540 192 HSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGPF----TFGELMEGVRTQVACVVQSGD 267 (291)
Q Consensus 192 ~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p~~~~~----~~~~~~~g~~v~l~C~~~~~~ 267 (291)
....|.|.++..+|+|.|+|.+.|..+.......|.|..+|.+... ....+.+|+.+.|.|.+ .+.
T Consensus 61 ---------~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~C~~-~~~ 130 (197)
T 3lcy_A 61 ---------RTHTLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVMY-IGR 130 (197)
T ss_dssp ---------SEEEEEEECCSGGGCEEEEEEEECSSCEEEEEEEEEEEEEEEECTTSCCCSEEEEETTSCEEEEEEE-EEE
T ss_pred ---------CEEEEEEecCCccCCEEEEEEEECCCCceeEEEEEEEEcCCCCCCCccCCcceeecCCCeEEEEEEE-eee
Confidence 1235777777778888888888877777667777777765544432 22227899999999999 889
Q ss_pred CCceEEEEECCEEccCC
Q psy14540 268 LPLSLQWYKNGLAISQP 284 (291)
Q Consensus 268 p~~~v~W~~~~~~l~~~ 284 (291)
|.+.+.|+++|..+...
T Consensus 131 p~p~v~W~~~~~~~~~~ 147 (197)
T 3lcy_A 131 PVPAMTWFHGQKLLQNS 147 (197)
T ss_dssp SCCEEEEEETTEECCCC
T ss_pred eCCeeEEeECCEECCCC
Confidence 99999999999998654
No 234
>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ...
Probab=99.81 E-value=9.9e-19 Score=130.39 Aligned_cols=146 Identities=16% Similarity=0.221 Sum_probs=92.6
Q ss_pred ceeecceeeeecCCcEEEEEEecCCCCCeeEEEECC--eecC-------CCeeE----eceEEee-ccceEEEEEEeecC
Q psy14540 5 LIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDG--YPLA-------GDRFV----MGQYMSL-HGDVISHVNISSVR 70 (291)
Q Consensus 5 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~--~~~~-------~~~~~----~~~~~~~-~~~~~~~l~i~~~~ 70 (291)
++..|..+.+.+|++++|.|.+. .+.+.+.|+|++ .... ..... ..+.... .....++|.|.+++
T Consensus 2 v~q~p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~v~ 80 (238)
T 1bec_A 2 VTQSPRNKVAVTGGKVTLSCQQT-NNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQEQFSLILELAT 80 (238)
T ss_dssp EEEECSEEEEETTCCEEEEEEES-SCCSEEEEEEECTTSCEEEEEEEEETTEEEECSCCTTCEEECCSSSEEEEEESSCC
T ss_pred cccCCCeeEEeCCCcEEEEEEeC-CCCceEEEEEECCCCCEEEEEEEeCCCcccCCCccceEEEEecCCCEEEEEEecCC
Confidence 56678888999999999999985 457889999853 1110 00000 0011111 12345789999999
Q ss_pred CCCCeEEEEEEeCCCC-----ceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCC-ceeEEeEC
Q psy14540 71 VEDSGIYQCTATNRVG-----SQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPP-LTISWLKN 144 (291)
Q Consensus 71 ~~d~G~y~C~~~~~~~-----~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~-~~~~W~~~ 144 (291)
.+|+|.|.|.+.+..+ .......|.|......+.........+....+.+|+.++|.|.+.+.+|. +.+.|+++
T Consensus 81 ~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~~~ 160 (238)
T 1bec_A 81 PSQTSVYFCASGGGRGSYAEQFFGPGTRLTVLEDLRQVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVN 160 (238)
T ss_dssp GGGCEEEEEEEESCTTCGGGCEECCCEEEEEESCGGGCBCCEEEEECCCSTTCSSSCSCSEEEEEEEEBSCCEEEEEEET
T ss_pred cccCEEEEEEEecCCCCccccccCCCEEEEEeccCCCCCCCceEEECCChHHcccCCceEEEEEEeeEeCCCcEEEEEEC
Confidence 9999999999987532 12234567776532111111122222333445689999999999544575 49999999
Q ss_pred CEeccCC
Q psy14540 145 GLPILSD 151 (291)
Q Consensus 145 ~~~~~~~ 151 (291)
|..+...
T Consensus 161 g~~~~~~ 167 (238)
T 1bec_A 161 GKEVHSG 167 (238)
T ss_dssp TEEECTT
T ss_pred CEECCCc
Confidence 9887543
No 235
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Probab=99.81 E-value=6.6e-19 Score=129.04 Aligned_cols=132 Identities=26% Similarity=0.341 Sum_probs=91.7
Q ss_pred CCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCC
Q psy14540 112 NSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDN 191 (291)
Q Consensus 112 ~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~ 191 (291)
.+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+..............
T Consensus 12 ~p~~~~v~~G~~v~L~C~~-~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~----------------------------- 61 (212)
T 2yd6_A 12 TPVDQTGVSGGVASFICQA-TGDPRPKIVWNKKGKKVSNQRFEVIEFDDGS----------------------------- 61 (212)
T ss_dssp CCCCEEEETTSCEEEEEEE-EEESCCEEEEEETTEECCCTTEEEEEEGGGT-----------------------------
T ss_pred CcceeEEecCCeEEEEEEE-eeCCCCEEEEEECCcCCCCCceeEEEEcCCC-----------------------------
Confidence 3455778899999999999 5888899999999988764332221111111
Q ss_pred CceEEEEeccceEEEEeee-ecCCCeeEEEEeeeCCccCCceeEEEEecC-------CCCCCCCccc-ccCCceEEEEEE
Q psy14540 192 HSSNLRVNEYTSSLSIATL-STGHSGNYTCVASNTVASDNHSSNLRVNVP-------PHIGPFTFGE-LMEGVRTQVACV 262 (291)
Q Consensus 192 ~~~~~~~~~~~~~l~i~~~-~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~-------p~~~~~~~~~-~~~g~~v~l~C~ 262 (291)
...|.|.++ ..+|+|.|+|.+.|..+.....+.|.|..+ |.+...+... +.+|+.++|.|.
T Consensus 62 ----------~~~L~i~~v~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~ 131 (212)
T 2yd6_A 62 ----------GSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCA 131 (212)
T ss_dssp ----------EEEEEECSCCTTTTCEEEEEEEEETTEEEEEEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEEEEE
T ss_pred ----------ceEEEEeccCCCCCCeEEEEEEEcCCCcEEEEEEEEEeccCccCCCcceeecCCcceeEecCCCEEEEEE
Confidence 234666666 366777777777777666666667777543 3333333333 788999999999
Q ss_pred eecCCCCceEEEEECCEEccCC
Q psy14540 263 VQSGDLPLSLQWYKNGLAISQP 284 (291)
Q Consensus 263 ~~~~~p~~~v~W~~~~~~l~~~ 284 (291)
+ .|.|.+.+.|+++|..+...
T Consensus 132 ~-~g~p~p~v~W~~~g~~l~~~ 152 (212)
T 2yd6_A 132 A-SGNPDPEITWFKDFLPVDTS 152 (212)
T ss_dssp E-ECSSCCEEEEEETTEEC---
T ss_pred e-cCCCCCeEEEEECCccccCc
Confidence 9 88999999999999998654
No 236
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A
Probab=99.80 E-value=2.4e-19 Score=129.52 Aligned_cols=131 Identities=21% Similarity=0.398 Sum_probs=96.6
Q ss_pred CCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCC--ceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCC
Q psy14540 112 NSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDA--EITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVAS 189 (291)
Q Consensus 112 ~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 189 (291)
.+....+.+|+.++|.|.+ .+.|.+.+.|++++..+.... +....
T Consensus 11 ~~~~~~v~~G~~v~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~-------------------------------- 57 (194)
T 2a38_A 11 PLQSVVVLEGSTATFEAHI-SGFPVPEVSWFRDGQVISTSTLPGVQIS-------------------------------- 57 (194)
T ss_dssp CCCCEEEETTSCEEEEEEE-EEESCCEEEEEESSSBCCTTTSTTCEEE--------------------------------
T ss_pred cCCceEEECCCEEEEEEEE-EecCCCEEEEEECCEEcccccCCceEEE--------------------------------
Confidence 3455788899999999998 688888999999998775442 11111
Q ss_pred CCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEe---cCCCCCCCCccc-ccCCceEEEEEEeec
Q psy14540 190 DNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVN---VPPHIGPFTFGE-LMEGVRTQVACVVQS 265 (291)
Q Consensus 190 ~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~---~~p~~~~~~~~~-~~~g~~v~l~C~~~~ 265 (291)
.......|.|.++..+|+|.|+|.+.|..+.......|.|. .+|.+...+... +.+|+.+.|.|.+ .
T Consensus 58 --------~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~-~ 128 (194)
T 2a38_A 58 --------FSDGRAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVRV-T 128 (194)
T ss_dssp --------EETTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCEEEEEEECCCCEEECTTEEEEEEEEE-E
T ss_pred --------eCCCEEEEEECCCCcccCEEEEEEEEcCCceEeEEEEEEEccCCCCCEEEeCCccEEEcCCCEEEEEEEE-E
Confidence 11123467777777788888888888777666666677776 345544444333 8899999999999 8
Q ss_pred CCCCceEEEEECCEEccCC
Q psy14540 266 GDLPLSLQWYKNGLAISQP 284 (291)
Q Consensus 266 ~~p~~~v~W~~~~~~l~~~ 284 (291)
+.|.+.+.|+++|..+...
T Consensus 129 g~p~~~v~W~~~~~~~~~~ 147 (194)
T 2a38_A 129 GIPTPVVKFYRDGAEIQSS 147 (194)
T ss_dssp EESCCEEEEEETTEECCCS
T ss_pred EecCCeEEEEECCEECCCC
Confidence 8899999999999998654
No 237
>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E 2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D* 3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E 3kxf_E 2cde_B ...
Probab=99.80 E-value=5.9e-19 Score=132.75 Aligned_cols=198 Identities=14% Similarity=0.182 Sum_probs=116.3
Q ss_pred CcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECC--ee---cC---C-Ce-e---EeceEEeec-cceEEEEEEee
Q psy14540 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDG--YP---LA---G-DR-F---VMGQYMSLH-GDVISHVNISS 68 (291)
Q Consensus 3 p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~--~~---~~---~-~~-~---~~~~~~~~~-~~~~~~l~i~~ 68 (291)
+.+...|..+.+.+|++++|.|.+. .+.+.+.|++.. .. +. . .. . ...+..... ....++|.|.+
T Consensus 4 ~~v~q~p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~ 82 (252)
T 1oga_E 4 GGITQSPKYLFRKEGQNVTLSCEQN-LNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTS 82 (252)
T ss_dssp -CEECSCSEEEEETTCCEEECCEEC-SCCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECS
T ss_pred ccceEcCCeEEEcCCCcEEEEEEeC-CCCCEEEEEEECCCCCeEEEEEEccCccccCCccCCcEEEEecCCCEEEEEECc
Confidence 3566778888999999999999985 457889999853 11 10 0 00 0 001111111 12345799999
Q ss_pred cCCCCCeEEEEEEeCCC---CceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCC-ceeEEeEC
Q psy14540 69 VRVEDSGIYQCTATNRV---GSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPP-LTISWLKN 144 (291)
Q Consensus 69 ~~~~d~G~y~C~~~~~~---~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~-~~~~W~~~ 144 (291)
++.+|+|.|.|.+.+.. ........|.|......+.........+....+.+|+.++|.|.+...+|. +.+.|+++
T Consensus 83 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~~~ 162 (252)
T 1oga_E 83 AQKNPTAFYLCASSSRSSYEQYFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVN 162 (252)
T ss_dssp CCSCCCEEEEEEEESSTTSCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEET
T ss_pred CChhhCEEEEEEEecCCccceeECCCEEEEEecccCCCCCCeEEEECCChhhhccCCceEEEEEEeeEcCCCcEEEEEEC
Confidence 99999999999998751 122234457776421100011111122223345578999999999544575 59999999
Q ss_pred CEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecC-CCeeEEEEee
Q psy14540 145 GLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTG-HSGNYTCVAS 223 (291)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~-~~g~y~C~~~ 223 (291)
|..+........ .....+.....|.|.. .+.|.|...... ++|.|+|.+.
T Consensus 163 g~~l~~~~~~~~---------~~~~~~~~~~~gt~~~--------------------~s~L~i~~~~~~d~~~~ytC~v~ 213 (252)
T 1oga_E 163 GKEVHSGVSTDP---------QPLKEQPALNDSRYSL--------------------SSRLRVSATFWQNPRNHFRCQVQ 213 (252)
T ss_dssp TEEECSSEEECS---------SCEESCTTSTTCCEEE--------------------EEEEEEEHHHHTCTTCEEEEEEE
T ss_pred CEECCCCccccc---------ccccccccCCCCCEEE--------------------EEEEEECHHHhccCCCEEEEEEE
Confidence 988754311000 0001122234455543 235667666553 6788999999
Q ss_pred eCCccCC
Q psy14540 224 NTVASDN 230 (291)
Q Consensus 224 ~~~~~~~ 230 (291)
|......
T Consensus 214 ~~~l~~~ 220 (252)
T 1oga_E 214 FYGLSEN 220 (252)
T ss_dssp ECCBCTT
T ss_pred cCCCCCC
Confidence 9875444
No 238
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}
Probab=99.80 E-value=1.5e-18 Score=133.31 Aligned_cols=176 Identities=15% Similarity=0.171 Sum_probs=106.4
Q ss_pred eeeecCCcEEEEEEecCCCCCeeEEEECCeecC-CCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCce-e
Q psy14540 12 QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLA-GDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQ-T 89 (291)
Q Consensus 12 ~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~-~ 89 (291)
..+.+|+.+.|.|.+. .|.+.+.|++++.... ..... ...+ + +...|+|.|+|.+.+..+.. +
T Consensus 105 ~~v~~G~~v~l~C~~~-~p~~~v~w~~~~~~~~~~~~~~-------~~~~---~----~~~~d~G~Y~C~a~n~~~~~~s 169 (289)
T 3mjg_X 105 IFLTEITEITIPCRVT-DPQLVVTLHEKKGDVALPVPYD-------HQRG---F----SGIFEDRSYICKTTIGDREVDS 169 (289)
T ss_dssp EEESSCCCEEECCCBS-CTTSCEEEEESSCCSCCCCCEE-------TTTE---E----EECCCSSEEEEEEEETTEEEEC
T ss_pred EEeecCCeEEEEeEcC-CCCceEEEEeCCCCCccceeec-------CCcC---e----eeeccCcEEEEEEEeCCceeee
Confidence 5689999999999998 6778899998653222 11111 1111 1 13579999999998655432 3
Q ss_pred eeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEe
Q psy14540 90 HSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIA 169 (291)
Q Consensus 90 ~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~ 169 (291)
....+.|... ..|. .. ..+....+.+|+.+.|.|.+ .+.|.+.+.|++++................
T Consensus 170 ~~~~l~v~~~-~~p~--i~--~~~~~~~v~~G~~v~L~C~~-~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~-------- 235 (289)
T 3mjg_X 170 DAYYVYRLQV-SSIN--VS--VNAVQTVVRQGENITLMCIV-IGNEVVNFEWTYPRKESGRLVEPVTDFLLD-------- 235 (289)
T ss_dssp CCEEEEECCC-CCCC--CE--EEESCSEEETTSCEEEEEEE-ESCSSBEEEEECTTSSSSCCCCCEEEESCT--------
T ss_pred eeEEEEecCC-CCCC--cE--EeCCcceeEcCCCEEEEEEE-CCCCCcceEEEcCCccCCCcccccccccCC--------
Confidence 3345565543 1121 11 11223568899999999999 579999999998776543221111100000
Q ss_pred eCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCCCC
Q psy14540 170 TLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHI 243 (291)
Q Consensus 170 ~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p~~ 243 (291)
... .....|.|.++..+|+|.|+|.|.|..|....+..|.|...|.+
T Consensus 236 ---~~~------------------------~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~v~~~~~~ 282 (289)
T 3mjg_X 236 ---MPY------------------------HIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINITVVESG 282 (289)
T ss_dssp ---TTT------------------------EEEEEEEESSCCSSCCEEEEEEEEETTTTEEEEEEEEEEEEC--
T ss_pred ---cce------------------------EEEEEEEEcccChhhCcEEEEEeecCCCCceeEEEEEEEEEecC
Confidence 000 01345667777777777777777777777777777777665543
No 239
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}
Probab=99.80 E-value=6.5e-19 Score=128.21 Aligned_cols=127 Identities=15% Similarity=0.214 Sum_probs=84.9
Q ss_pred ceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccC-CceEEEEEeeCCCCCceeEEEEEEecCCCCCCc
Q psy14540 115 SIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSG-EYTSSLSIATLSTGHSGNYTCVASNTVASDNHS 193 (291)
Q Consensus 115 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~ 193 (291)
...+.+|+.+.|.|.+..+.|.+.+.|++||.++....+..+..+. .+...|.|.++..+|+|.|+|.+.|
T Consensus 11 ~~~v~eg~~v~l~c~~~~~~P~p~i~W~kng~~l~~~~~~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a~N-------- 82 (207)
T 3rbs_A 11 AVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQD-------- 82 (207)
T ss_dssp EEEECGGGCEEEEEECSCCCSCCEEEEEETTEEECSSSSCEEEECTTTCEEEEEESCCCGGGCEEEEEEEEE--------
T ss_pred ceEEEeCCeEEEEEEEecCCCCCEEEEEECCEECccCCCEEEEEeCCCCEEEEEECCCChhhCEEEEEEEEC--------
Confidence 4678899999999999656899999999999999776665544322 2334455555555555555555554
Q ss_pred eEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEE---------------------ecCCCCCCCCccccc
Q psy14540 194 SNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRV---------------------NVPPHIGPFTFGELM 252 (291)
Q Consensus 194 ~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v---------------------~~~p~~~~~~~~~~~ 252 (291)
... .....+.+ ..+|.+.......+.
T Consensus 83 -------------------------------g~a--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~v~ 129 (207)
T 3rbs_A 83 -------------------------------GKA--TNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVT 129 (207)
T ss_dssp -------------------------------TTE--EEEEEEEECTHHHHHHHHHHHHHHHHHHHHTSSEEEEEEEEEEE
T ss_pred -------------------------------CCe--EEEEEEEEEccchhhhcccccccccccccCCCCceEecCCcEEc
Confidence 111 11111110 013444333323378
Q ss_pred CCceEEEEEEeecCC-CCceEEEEECCEEccC
Q psy14540 253 EGVRTQVACVVQSGD-LPLSLQWYKNGLAISQ 283 (291)
Q Consensus 253 ~g~~v~l~C~~~~~~-p~~~v~W~~~~~~l~~ 283 (291)
+|+.+.|.|.+ .|. |.|.|+|+|||.+|..
T Consensus 130 ~g~~v~l~C~v-~g~~P~p~i~W~k~g~~l~~ 160 (207)
T 3rbs_A 130 GECNVLLKCKV-ANIKKETHIVWYKDEREISV 160 (207)
T ss_dssp TTTEEEEEEEE-ESCCTTCEEEEEETTEEECC
T ss_pred CCCcEEEEEEE-eCCCCCCEEEEEECCEECCC
Confidence 99999999999 777 8999999999999854
No 240
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane, phosphorylation, immunoglobulin domain, membrane, glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB: 2xy1_A*
Probab=99.80 E-value=4e-19 Score=128.08 Aligned_cols=126 Identities=22% Similarity=0.474 Sum_probs=98.1
Q ss_pred cceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCc
Q psy14540 114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHS 193 (291)
Q Consensus 114 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~ 193 (291)
....+.+|+.+.|.|.+ .+.|.+.+.|++++..+....+....
T Consensus 12 ~~~~v~~G~~v~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~------------------------------------ 54 (192)
T 2va4_A 12 FNATAERGEEMTFSCRA-SGSPEPAISWFRNGKLIEENEKYILK------------------------------------ 54 (192)
T ss_dssp EEEETTSCCCEEEECEE-ECSSCCEEEEEETTEECCCSSSEEEE------------------------------------
T ss_pred cEEEEecCCCEEEEEee-ccCCCCeEEEEECCeEcCCCccEEEe------------------------------------
Confidence 35678899999999999 68888999999999888655433221
Q ss_pred eEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCCCCCCCCcccccCCceEEEEEEeecCCCCceEE
Q psy14540 194 SNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGPFTFGELMEGVRTQVACVVQSGDLPLSLQ 273 (291)
Q Consensus 194 ~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~g~~v~l~C~~~~~~p~~~v~ 273 (291)
.....|.|.++..+|+|.|+|.+.+..+.....+.|.|..+|.+.......+.+|+.+.|.|.+ .+.|.+.+.
T Consensus 55 ------~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~g~~v~l~C~~-~~~p~~~v~ 127 (192)
T 2va4_A 55 ------GSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQPHIIQLKNETTYENGQVTLVCDA-EGEPIPEIT 127 (192)
T ss_dssp ------TTTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEEEEEEECCEEECTTSEEEEEEEE-EEESCCEEE
T ss_pred ------CCeeEEEEecCChhcCcEEEEEEEccccccceEEEEEEEccCcccccCcceEEeCCeEEEEEEe-cCCCCCcEE
Confidence 1134577778888888888888888777766777888877777665555557789999999999 888999999
Q ss_pred EEEC--CEEccC
Q psy14540 274 WYKN--GLAISQ 283 (291)
Q Consensus 274 W~~~--~~~l~~ 283 (291)
|+++ +..+..
T Consensus 128 W~~~~~~~~~~~ 139 (192)
T 2va4_A 128 WKRAVDGFTFTE 139 (192)
T ss_dssp EEETTTTEEECT
T ss_pred EEeCCCCceeec
Confidence 9999 666654
No 241
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A
Probab=99.80 E-value=9.5e-19 Score=126.66 Aligned_cols=132 Identities=23% Similarity=0.331 Sum_probs=97.5
Q ss_pred CCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCC-ceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCC
Q psy14540 112 NSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDA-EITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASD 190 (291)
Q Consensus 112 ~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~ 190 (291)
.+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+.... +........
T Consensus 10 ~~~~~~v~~G~~v~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~----------------------------- 59 (197)
T 2j8h_A 10 ELRNLNVRYQSNATLVCKV-TGHPKPIVKWYRQGKEIIADGLKYRIQEFKG----------------------------- 59 (197)
T ss_dssp CCCCEEEETTSCEEEEEEE-ECSSCCEEEEEETTEECCCCSSSEEEEEETT-----------------------------
T ss_pred cCCccEEcCCCEEEEEEEE-eecCCCEEEEEECCEECccCCCcEEEEEcCC-----------------------------
Confidence 3456788999999999999 588899999999998876432 222111111
Q ss_pred CCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCCCCCCCCc------ccccCCceEEEEEEee
Q psy14540 191 NHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGPFTF------GELMEGVRTQVACVVQ 264 (291)
Q Consensus 191 ~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p~~~~~~~------~~~~~g~~v~l~C~~~ 264 (291)
....|.|.++..+|+|.|+|.+.|..+.....+.|.|..+|.+..... ..+.+|+.++|.|.+
T Consensus 60 ----------~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~- 128 (197)
T 2j8h_A 60 ----------GYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPF- 128 (197)
T ss_dssp ----------TEEEEEECSCCGGGCSEEEEEEEETTEEEEEEEEEEEEEEEEECCSSCBTTBEEEEEETTCCCEEEEEE-
T ss_pred ----------CEEEEEECcCCHHhCEEEEEEEEECCCceeEEEEEEEcCCCcCCCCccccccCeEEEeCCCEEEEEEEE-
Confidence 123677777788888888888888777777777788776655433321 227889999999999
Q ss_pred cCCCCceEEEEECCEEccCC
Q psy14540 265 SGDLPLSLQWYKNGLAISQP 284 (291)
Q Consensus 265 ~~~p~~~v~W~~~~~~l~~~ 284 (291)
.+.|.+.+.|+++|..+...
T Consensus 129 ~g~p~p~i~W~~~~~~~~~~ 148 (197)
T 2j8h_A 129 SGKPDPVITWQKGQDLIDNN 148 (197)
T ss_dssp EEESCCEEEEEESSCEECSS
T ss_pred EecCCCcEEEEECCEEeecC
Confidence 78899999999999988643
No 242
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, IG, membrane, homphilic, glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB: 2xy2_A* 2vaj_A
Probab=99.80 E-value=6.3e-19 Score=126.75 Aligned_cols=127 Identities=18% Similarity=0.387 Sum_probs=94.1
Q ss_pred CcceeecCCCceEEEEEeeCCCCCceeEEeE-CCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCC
Q psy14540 113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLK-NGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDN 191 (291)
Q Consensus 113 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~-~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~ 191 (291)
+....+.+|+.+.|.|.+ .+.|. .+.|++ ++..+....+......
T Consensus 9 ~~~~~v~~G~~v~L~C~~-~~~p~-~v~W~~~~~~~~~~~~~~~~~~~-------------------------------- 54 (189)
T 2v44_A 9 LSKVELSVGESKFFTCTA-IGEPE-SIDWYNPQGEKIISTQRVVVQKE-------------------------------- 54 (189)
T ss_dssp CSEEEEETTCCEEEEEEE-EECCS-EEEEECTTSCBCCCCSSEEEEEE--------------------------------
T ss_pred CCceEEecCCcEEEEEEe-ecCCe-eEEEEeCCCCccCCCceEEEECC--------------------------------
Confidence 445788899999999999 56676 899999 6766654443332211
Q ss_pred CceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccC-CceeEEEEecCCCCCCCCccc-ccCCceEEEEEEeecCCCC
Q psy14540 192 HSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASD-NHSSNLRVNVPPHIGPFTFGE-LMEGVRTQVACVVQSGDLP 269 (291)
Q Consensus 192 ~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~-~~~~~l~v~~~p~~~~~~~~~-~~~g~~v~l~C~~~~~~p~ 269 (291)
.....|.|.++..+|+|.|+|.+.+..+.. +..+.|.|..+|.+...+... +.+|+.++|.|.+ .+.|.
T Consensus 55 --------~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~-~g~p~ 125 (189)
T 2v44_A 55 --------GVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRV-SSSPA 125 (189)
T ss_dssp --------TTEEEEEECSCCGGGCEEEEEEEECTTSCEEEEEEEEEEECCCEEESCCCSEEEETTSCEEECCEE-ECSSC
T ss_pred --------CCeEEEEEccCCcccCeEEEEEEEeCCCCcEEEEEEEEEecCCceeecCCcEEEeCCCCEEEEEEE-CcCCC
Confidence 113467777888888888888888876543 567788888887765544444 8899999999999 78999
Q ss_pred ceEEEEECCEEcc
Q psy14540 270 LSLQWYKNGLAIS 282 (291)
Q Consensus 270 ~~v~W~~~~~~l~ 282 (291)
|.+.|+++|..+.
T Consensus 126 p~v~W~~~~~~~~ 138 (189)
T 2v44_A 126 PAVSWLYHNEEVT 138 (189)
T ss_dssp CEEEEEEEC--CE
T ss_pred CcEEEEECCcEEe
Confidence 9999999998875
No 243
>3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E
Probab=99.79 E-value=8.8e-19 Score=131.65 Aligned_cols=176 Identities=24% Similarity=0.368 Sum_probs=91.1
Q ss_pred eecceeeeecCCcEEEEEEecCCC--CCeeEEEECC--eecC------C--CeeE-----eceEEee--ccceEEEEEEe
Q psy14540 7 YKFIQQTLQPGPPVSLKCIATGNP--TPHISWKLDG--YPLA------G--DRFV-----MGQYMSL--HGDVISHVNIS 67 (291)
Q Consensus 7 ~~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~--~~~~------~--~~~~-----~~~~~~~--~~~~~~~l~i~ 67 (291)
..|....+.+|++++|.|.+.+.+ .+.+.|++.. ..+. . .... ..+.... .....++|.|.
T Consensus 5 ~qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~ 84 (257)
T 3bn9_D 5 VQSGGGLVKPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMS 84 (257)
T ss_dssp EEECCEEECTTCEEEEEEEEESSCGGGCCEEEEEECTTSCEEEEEEECSSSCCEEECGGGTTTEEEEEETTTTEEEEEEE
T ss_pred EccCCEEEcCCCcEEEEEEeccccCCCceEEEEEECCCCCeEEEEEEecCCCceecCcccCCceEEEecCCCCEEEEEEC
Confidence 345667899999999999998754 5789999843 1110 0 0000 0111111 12345789999
Q ss_pred ecCCCCCeEEEEEEeCCCC-------------ceeeeeeEEEEcCC-CCCcccceeccCCcceeecCCCceEEEEEeeCC
Q psy14540 68 SVRVEDSGIYQCTATNRVG-------------SQTHSADMRVYDAP-GQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKG 133 (291)
Q Consensus 68 ~~~~~d~G~y~C~~~~~~~-------------~~~~~~~l~v~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~ 133 (291)
+++.+|+|.|.|.+.+..+ .....+.|.|...+ ..| ......+ ...+.+|+.++|.|.+...
T Consensus 85 ~v~~~DsG~Y~C~~~~~~g~~~~~~~~~~~~~~~~~~t~L~V~~~~~~~P---~v~~~~p-~~~~~~g~~v~L~C~~~g~ 160 (257)
T 3bn9_D 85 SLRAEDTAVYYCARPYLTYPQRRGPQNVSPFDNWGQGTMVTVSSASTKGP---SVFPLAP-SSKSTSGGTAALGCLVKDY 160 (257)
T ss_dssp SCCGGGCEEEEEEEECCSSTTSCCCCTTCCEEEECCCEEEEECSSCCBCC---EECCCCC------------CCCEEEEE
T ss_pred CCChhhCEEEEEEEecCCCcccccccccceeeeeCCcEEEEecCCCCcCC---cEEEecC-cccccCCCcEEEEEEEeeE
Confidence 9999999999999987653 11234577776522 112 1111111 1235679999999999644
Q ss_pred CCCc-eeEEeECCEeccCCCc-eEEeccCCc--eEEEEEeeCCCCCceeEEEEEEecC
Q psy14540 134 DPPL-TISWLKNGLPILSDAE-ITIRSSGEY--TSSLSIATLSTGHSGNYTCVASNTV 187 (291)
Q Consensus 134 ~p~~-~~~W~~~~~~~~~~~~-~~~~~~~~~--~~~l~i~~~~~~d~g~y~C~~~~~~ 187 (291)
+|.+ .+.|++++..+..... .....++.+ ...|.|.....+| |.|+|.|.|..
T Consensus 161 ~P~pi~v~W~k~g~~~~~~~~~~~~~~~g~y~~~s~L~I~~~~~~~-g~YtC~v~n~~ 217 (257)
T 3bn9_D 161 FPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKP 217 (257)
T ss_dssp BSSCCEEEETTTTCCSSCEECCCEECTTSCEEEEEECCCC--------CEEEEEEEGG
T ss_pred ECCCcEEEEeeCCCcCCcEecCCeEcCCCCEEEEEEEEEcccccCC-CeEEEEEEecC
Confidence 5776 9999999876421100 011111111 1234444444445 66666666643
No 244
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A
Probab=99.79 E-value=2e-18 Score=124.38 Aligned_cols=129 Identities=21% Similarity=0.397 Sum_probs=97.0
Q ss_pred CcceeecCCCceEEEEEeeCCCC-CceeEEeE-CCEeccCC-CceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCC
Q psy14540 113 SRSIKVHSGDRAGVQCLVTKGDP-PLTISWLK-NGLPILSD-AEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVAS 189 (291)
Q Consensus 113 ~~~~~~~~g~~~~l~C~~~~~~p-~~~~~W~~-~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 189 (291)
+....+.+|+.+.|.|.+ .+.+ .+.+.|++ ++..+... .+......
T Consensus 9 p~~~~v~~G~~v~l~C~~-~~~~~~~~v~W~~~~g~~~~~~~~~~~~~~~------------------------------ 57 (191)
T 1epf_A 9 PSQGEISVGESKFFLCQV-AGDAKDKDISWFSPNGEKLSPNQQRISVVWN------------------------------ 57 (191)
T ss_dssp SSSEEEETTCCEEEEEEE-CCCSCCCEEEEECTTSCEECCBSSSEEEEEE------------------------------
T ss_pred CCCcEEcCCCCEEEEEEC-CCCCCCceEEEEeCCCccccCCCCeEEEEEC------------------------------
Confidence 345678899999999999 5655 88999999 87766532 22221111
Q ss_pred CCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCC-ccCCceeEEEEecCCCCCCCCccc-ccCCceEEEEEEeecCC
Q psy14540 190 DNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTV-ASDNHSSNLRVNVPPHIGPFTFGE-LMEGVRTQVACVVQSGD 267 (291)
Q Consensus 190 ~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~-~~~~~~~~l~v~~~p~~~~~~~~~-~~~g~~v~l~C~~~~~~ 267 (291)
......|.|.++..+|+|.|+|.+.+.. +..+..+.|.|..+|.+...+... +.+|+.+.|.|.+ .+.
T Consensus 58 ---------~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~-~g~ 127 (191)
T 1epf_A 58 ---------DDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDV-VSS 127 (191)
T ss_dssp ---------ETTEEEEEECSCCGGGCEEEEEEEEETTTEEEEEEEEEEEECCSEEEECCSSEECCTTSCEEECCEE-ECS
T ss_pred ---------CCCceEEEEccCCcccCEEEEEEEEcCCCcceEEEEEEEeecCceEecCCCcEeecCCCeEEEEEEE-CCC
Confidence 1124567777788888888888888876 556677788888888776655544 8999999999999 799
Q ss_pred CCceEEEEECCEEcc
Q psy14540 268 LPLSLQWYKNGLAIS 282 (291)
Q Consensus 268 p~~~v~W~~~~~~l~ 282 (291)
|.+.+.|+++|..+.
T Consensus 128 p~~~v~W~~~~~~~~ 142 (191)
T 1epf_A 128 LPPTIIWKHKGRDVI 142 (191)
T ss_dssp SCCEEEEEETTEEGG
T ss_pred CCCEEEEEECCEEee
Confidence 999999999999885
No 245
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*
Probab=99.78 E-value=1.5e-18 Score=126.07 Aligned_cols=116 Identities=19% Similarity=0.217 Sum_probs=88.4
Q ss_pred cceeecCCCceEEEEEeeCCCCCce-eEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCC
Q psy14540 114 RSIKVHSGDRAGVQCLVTKGDPPLT-ISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNH 192 (291)
Q Consensus 114 ~~~~~~~g~~~~l~C~~~~~~p~~~-~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~ 192 (291)
....+.+|+.++|.|.+ .+.|.+. +.|++++..+....
T Consensus 15 ~~~~v~~G~~v~L~C~~-~~~p~~~~v~W~k~g~~l~~~~---------------------------------------- 53 (204)
T 3sgj_C 15 QWYRVLEKDSVTLKCQG-AYSPEDQSTQWFHNESLISSQA---------------------------------------- 53 (204)
T ss_dssp CCSEEETTCCEEEEEEC-CSSSSCCCEEEEETTEEESCCS----------------------------------------
T ss_pred CCeEEECCCCEEEEEcC-CCCCCCcEEEEEECCEEcccCc----------------------------------------
Confidence 33678899999999999 5766654 99999998764321
Q ss_pred ceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCCCCCCCCcccccCCceEEEEEEeecCCCCceE
Q psy14540 193 SSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGPFTFGELMEGVRTQVACVVQSGDLPLSL 272 (291)
Q Consensus 193 ~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~g~~v~l~C~~~~~~p~~~v 272 (291)
..|.|.++..+|+|.|+|.+.|. ..+..+.|.|..+|.+...+...+.+|+.++|.|.+..+.|.+.|
T Consensus 54 ----------~~L~i~~v~~~D~G~Y~C~a~n~--~~s~~~~l~V~~~p~~~~~~~~~v~~G~~v~L~C~~~~~~p~~~v 121 (204)
T 3sgj_C 54 ----------SSYFIDAATVDDSGEYRCQTQLS--TLSDPVQLEVHIGWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKV 121 (204)
T ss_dssp ----------SEEEESSCCGGGCEEEEEEETTS--BCCCCEEEEEECSSEEEECSCSEEETTCCEEEEEEEGGGCCCEEE
T ss_pred ----------cEEEEecccccCCEEEEEEeCCC--cccccEEEEEecCceEecCCceeEeCCCcEEEEEEecCCCCCceE
Confidence 34667777777778888887763 445567778877776655555558899999999999556677899
Q ss_pred EEEECCEEcc
Q psy14540 273 QWYKNGLAIS 282 (291)
Q Consensus 273 ~W~~~~~~l~ 282 (291)
.|+|||..+.
T Consensus 122 ~W~k~g~~~~ 131 (204)
T 3sgj_C 122 TYLQNGKGRK 131 (204)
T ss_dssp EEEETTEEEE
T ss_pred EEEECCcEee
Confidence 9999999874
No 246
>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody, immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2qej_A*
Probab=99.78 E-value=8.3e-20 Score=133.94 Aligned_cols=191 Identities=15% Similarity=0.194 Sum_probs=110.4
Q ss_pred CCcce-eecceeeeecCCcEEEEEEecCCCC---CeeEEEECCeecCCCeeEece-EEeeccceEEEEEEeecCCCCCeE
Q psy14540 2 HPQLI-YKFIQQTLQPGPPVSLKCIATGNPT---PHISWKLDGYPLAGDRFVMGQ-YMSLHGDVISHVNISSVRVEDSGI 76 (291)
Q Consensus 2 ~p~~~-~~~~~~~v~~g~~v~l~C~~~~~~~---~~v~W~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~i~~~~~~d~G~ 76 (291)
+|.+. ..|....+.+|++++|.|.+.+.+. +.|.| ++..+......... .........+.|.|.+++..|+|.
T Consensus 3 ~p~v~~~~P~~~~v~~G~~v~L~C~~~g~~p~~~~~v~W--~~~~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~D~g~ 80 (214)
T 1ow0_A 3 HPRLSLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTW--TPSSGKSAVQGPPERDLCGCYSVSSVLPGCAEPWNHGKT 80 (214)
T ss_dssp CCCCEEECCCHHHHHHCSSCCCEEEETTCCSCCCCCCCB--SSCSSCCCEECCCCCCSTTCCCEEEECTTTHHHHHHTCE
T ss_pred CCEEEEECcChHHhccCCCcEEEEEEeeeECCCCeEEEE--cCCCCCCcccCCceECCCCcEEEEEEEEEeHHHcCCCCe
Confidence 56664 4477788899999999999988543 68999 44333321100000 000001144678899999999999
Q ss_pred EEEEEeCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCC-ceeEEeECCEeccCCCceE
Q psy14540 77 YQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPP-LTISWLKNGLPILSDAEIT 155 (291)
Q Consensus 77 y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~-~~~~W~~~~~~~~~~~~~~ 155 (291)
|+|.+.+..+.......+.+......| ......+....+..|+.++|.|.+.+.+|. +.+.|+++|..+.......
T Consensus 81 Y~C~~~~~~~~~~~~~~i~~~~~~~~P---~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~ 157 (214)
T 1ow0_A 81 FTCTAAYPESKTPLTATLSKSGNTFRP---EVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLT 157 (214)
T ss_dssp EEEEECCSSCSSCEEEEEECCSSCCCC---EEEEECCCTTTTTSSSEEEEEEEEEEESSSCCEEEEEETTEECCGGGSEE
T ss_pred EEEEEecCCCCCceeEeeccCCCCCCC---EEEecCCCHHHhccCCceEEEEEEeeeECCCcEEEEEECCEECCCCceee
Confidence 999999766543222222211112122 111122222346688999999999544664 5999999998876442111
Q ss_pred EeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCc
Q psy14540 156 IRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVA 227 (291)
Q Consensus 156 ~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~ 227 (291)
.. . ..+ .....|.|... +.|.+.....+++|.|+|.|.|...
T Consensus 158 ~~--------~-~~~-~~~~dgt~~~~--------------------s~l~v~~~~~~~~~~ytC~v~n~~l 199 (214)
T 1ow0_A 158 WA--------S-RQE-PSQGTTTFAVT--------------------SILRVAAEDWKKGDTFSCMVGHEAL 199 (214)
T ss_dssp CC--------C-EEC-SCSSSCCEEEE--------------------EEEEEEHHHHHHTCCEEEEEECTTC
T ss_pred cC--------C-ccc-ccCCCCcEEEE--------------------EEEEECHHHccCCCEEEEEEECCCC
Confidence 00 0 000 01134455442 3455555555668888888888764
No 247
>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49}
Probab=99.78 E-value=6.2e-17 Score=117.44 Aligned_cols=158 Identities=15% Similarity=0.280 Sum_probs=115.1
Q ss_pred CCcceeecceeeeecCCcEEEEEEecC-CC---CCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEE
Q psy14540 2 HPQLIYKFIQQTLQPGPPVSLKCIATG-NP---TPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIY 77 (291)
Q Consensus 2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~-~~---~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y 77 (291)
++.+.+.|+...+..|+.++|.|.+.+ .| ...++|+|++..+.... ..|.|..++..|+|.|
T Consensus 2 ~~tVs~~P~~~~i~~GdsVTLTatVaGGkP~pspyTYqWyKDG~~IsGaT--------------~tLti~s~t~sdSG~Y 67 (304)
T 3shs_A 2 AFTVSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENNT--------------ATLTVADATSENAGSY 67 (304)
T ss_dssp CEEEEEEESCSSBCTTCCEEEEEEEEESSSCCCCEEEEEEETTEECSCCS--------------SEEEESSCCGGGCEEE
T ss_pred ccEEEeCCCCccccCCCCEEEEEEecCCCCCCCCceEEEEECCccccCCc--------------ceEEeeeccccCCeEE
Confidence 356778898899999999999999875 55 45799999998766221 2377888999999999
Q ss_pred EEEEeCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEe--eCCCC-----CceeEEeECCEeccC
Q psy14540 78 QCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLV--TKGDP-----PLTISWLKNGLPILS 150 (291)
Q Consensus 78 ~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~--~~~~p-----~~~~~W~~~~~~~~~ 150 (291)
+|.+.+..+.......+.|..... .......+....+..|..+.|.+.+ ..|.| ..++.|++++..+..
T Consensus 68 qCvVTDa~Gcs~tSs~VtVT~~a~----l~i~it~P~s~~vssg~sVtL~aTVt~SGGtppA~~~~yTYQWyKngt~Isg 143 (304)
T 3shs_A 68 KVTVQDTDTMTSVESEVFLMEEAE----LIVNITEPQHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVIDT 143 (304)
T ss_dssp EEEEEETTTCCEEECCCEEECBCC----EEEEESSCSEEEECSSCCEEEEEEEEETTSCCSSTTCCCEEEEEETTEEEES
T ss_pred EEEEEECCCCeeeeeeEEEeccCc----eeEEecCCCceeccCCCeEEEEEEEeccCCCCcccCCCceeEEeeCCeEccC
Confidence 999998776654444444443321 1122233455566678889998876 55555 569999999987743
Q ss_pred CCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCC
Q psy14540 151 DAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVAS 189 (291)
Q Consensus 151 ~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 189 (291)
. ..+.+......+.|.|+|.+.+..+.
T Consensus 144 A------------q~lT~sS~TateaG~YtV~VTn~~~~ 170 (304)
T 3shs_A 144 T------------QDITIQEFTADKNGVYTVKVWGESED 170 (304)
T ss_dssp S------------SEEEECSCCGGGCEEEEEEEESSSGG
T ss_pred c------------cccceeeEEecCCeEEEEEEEcCCCC
Confidence 2 24666777888999999999998663
No 248
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}
Probab=99.78 E-value=2.6e-18 Score=123.65 Aligned_cols=119 Identities=20% Similarity=0.320 Sum_probs=93.6
Q ss_pred eeecC-CCceEEEEEeeCCCCC--ceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCC
Q psy14540 116 IKVHS-GDRAGVQCLVTKGDPP--LTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNH 192 (291)
Q Consensus 116 ~~~~~-g~~~~l~C~~~~~~p~--~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~ 192 (291)
..+.+ |+.+.|.|.+ .+.|. +.+.|++++..+.......
T Consensus 12 ~~v~~~G~~v~l~C~~-~~~~~~~~~v~W~~~~~~~~~~~~~~------------------------------------- 53 (190)
T 2wv3_A 12 VIIRDSLLPVTLQCNL-TSSSHTLMYSYWTKNGVELTATRKNA------------------------------------- 53 (190)
T ss_dssp EECCCSSSCEEEEEEE-EECSSCEEEEEEEETTEECTTCCBCC-------------------------------------
T ss_pred EEEccCCceEEEEEEe-ccCCCCceEEEEEECCEECcccceEe-------------------------------------
Confidence 45556 9999999998 46665 8999999998875432110
Q ss_pred ceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCCCCCCCCccc-ccCCceEEEEEEeecCCCCce
Q psy14540 193 SSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGPFTFGE-LMEGVRTQVACVVQSGDLPLS 271 (291)
Q Consensus 193 ~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~-~~~g~~v~l~C~~~~~~p~~~ 271 (291)
....|.|.++..+|+|.|+|.+.|. +..+..+.|.|..+|.+...+... +.+|+.+.|.|.+ .|.|.+.
T Consensus 54 --------~~~~L~i~~~~~~d~G~Y~C~~~n~-~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~-~g~p~p~ 123 (190)
T 2wv3_A 54 --------SNMEYRINKPRAEDSGEYHCVYHFV-SAPKANATIEVKAAPDITGHKRSENKNEGQDAMMYCKS-VGYPHPE 123 (190)
T ss_dssp --------SEEEEEESSCCGGGCEEEEEEEEET-TEEEEEEEEEEECCCEEEEECSEEEEETTSCEEEEEEE-ECSSCCE
T ss_pred --------ccEEEEEecCCcccCEEEEEEEEeC-CcccccEEEEEecCCcccccCCcceeeCCCcEEEEEEe-CccCCCc
Confidence 1346777778888888888888888 777778888898888877655544 8999999999999 8899999
Q ss_pred EEEEE--CCEEcc
Q psy14540 272 LQWYK--NGLAIS 282 (291)
Q Consensus 272 v~W~~--~~~~l~ 282 (291)
+.|++ +|..+.
T Consensus 124 i~W~~~~~g~~~~ 136 (190)
T 2wv3_A 124 WMWRKKENGVFEE 136 (190)
T ss_dssp EEEEEEETTEEEE
T ss_pred eEEEEcCCCceee
Confidence 99999 788763
No 249
>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Probab=99.78 E-value=1e-18 Score=111.39 Aligned_cols=95 Identities=21% Similarity=0.470 Sum_probs=78.6
Q ss_pred CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEE
Q psy14540 2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTA 81 (291)
Q Consensus 2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~ 81 (291)
||.|...|.+..+.+|+.+.|.|.+.+.|.+.+.|++++..+..... ...........++|.|.+++.+|+|.|+|.+
T Consensus 5 PP~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~--~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a 82 (100)
T 3knb_A 5 PPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQ--GRFHIENTDDLTTLIIMDVQKQDGGLYTLSL 82 (100)
T ss_dssp EEEECCCCSEEEEETTSEEEEEEEEEEESCCEEEEEETTEECCTTGG--GTEEEEECSSEEEEEESSCCGGGCEEEEEEE
T ss_pred CCEEEeCCCcEEEeCCCeEEEEEEEEEecCCEEEEEECceEeeeecc--ceeeeecccceEEEEEcCCCccCCEEEEEEE
Confidence 78999999999999999999999999999999999999998873210 0111123344578999999999999999999
Q ss_pred eCCCCceeeeeeEEEEc
Q psy14540 82 TNRVGSQTHSADMRVYD 98 (291)
Q Consensus 82 ~~~~~~~~~~~~l~v~~ 98 (291)
.|..|.....+.|.|..
T Consensus 83 ~N~~G~~~~~~~l~V~~ 99 (100)
T 3knb_A 83 GNEFGSDSATVNIHIRS 99 (100)
T ss_dssp EETTEEEEEEEEEEEEC
T ss_pred EECCCEEEEEEEEEEEE
Confidence 99999888888888864
No 250
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}
Probab=99.78 E-value=8.3e-19 Score=126.43 Aligned_cols=130 Identities=25% Similarity=0.434 Sum_probs=96.5
Q ss_pred cCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCC-ceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCC
Q psy14540 111 SNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDA-EITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVAS 189 (291)
Q Consensus 111 ~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 189 (291)
..+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+.... +....
T Consensus 12 ~~~~~~~~~~G~~v~l~C~~-~~~p~~~i~W~~~~~~~~~~~~~~~~~-------------------------------- 58 (192)
T 2iep_A 12 TPLETVDALVEEVATFMCAV-ESYPQPEISWTRNKILIKLFDTRYSIR-------------------------------- 58 (192)
T ss_dssp SCCCEEEEETTSCEEEECCE-EEESCCEEEEEETTEECCTTCTTEEEE--------------------------------
T ss_pred cCccceeeeCCCcEEEEeeC-CCCCCCeEEEEECCEEccccCccEEEc--------------------------------
Confidence 34455778899999999998 578888999999998775421 22111
Q ss_pred CCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCcc-CCceeEEEEecCCCCCCCCccc-ccCCceEEEEEEeecCC
Q psy14540 190 DNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVAS-DNHSSNLRVNVPPHIGPFTFGE-LMEGVRTQVACVVQSGD 267 (291)
Q Consensus 190 ~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~-~~~~~~l~v~~~p~~~~~~~~~-~~~g~~v~l~C~~~~~~ 267 (291)
.....|.|.++..+|+|.|+|.+.|..+. ......|.|..+|.+...+... +.+|+.++|.|.+ .+.
T Consensus 59 ----------~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~-~g~ 127 (192)
T 2iep_A 59 ----------ENGQLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPPINVKIIEGLKAVLPCTT-MGN 127 (192)
T ss_dssp ----------GGGTEEEESSCCGGGCEEEEEEEECSSSCCEEEEEEEEEEEEEEEEECCCCEEEETTSCEEECCEE-EEE
T ss_pred ----------CCccEEEEcCCCcccCeEEEEEEEcCCCceeEeEEEEEEEeCCccccCCcceEEeCCCcEEEEEEE-ecc
Confidence 11235777777777888888888776655 3455667777777666554444 8899999999999 888
Q ss_pred CCceEEEEECCEEccCC
Q psy14540 268 LPLSLQWYKNGLAISQP 284 (291)
Q Consensus 268 p~~~v~W~~~~~~l~~~ 284 (291)
|.+.+.|+++|..+...
T Consensus 128 p~~~v~W~~~~~~~~~~ 144 (192)
T 2iep_A 128 PKPSVSWIKGDSALREN 144 (192)
T ss_dssp SCCEEEEEETTEECCCC
T ss_pred CCceEEEEeCCEEccCC
Confidence 88999999999988654
No 251
>1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2
Probab=99.78 E-value=8.3e-18 Score=124.65 Aligned_cols=142 Identities=16% Similarity=0.183 Sum_probs=89.9
Q ss_pred ceeecceeeeecCCcEEEEEEecCC--CCCeeEEEECC--eecC------CCe--e----EeceEEee--ccceEEEEEE
Q psy14540 5 LIYKFIQQTLQPGPPVSLKCIATGN--PTPHISWKLDG--YPLA------GDR--F----VMGQYMSL--HGDVISHVNI 66 (291)
Q Consensus 5 ~~~~~~~~~v~~g~~v~l~C~~~~~--~~~~v~W~~~~--~~~~------~~~--~----~~~~~~~~--~~~~~~~l~i 66 (291)
+...|..+.+.+|++++|.|.+.+. +...+.|++.. ..+. ... . ...+.... .+...++|.|
T Consensus 4 v~q~p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I 83 (230)
T 1ypz_F 4 LEQPEISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTI 83 (230)
T ss_dssp EECSCSEEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEE
T ss_pred ccccCCEEEEeCCCcEEEEEEeeccccCccEEEEEEECCCCCCEEEEEEecCCeeecCcccCCeEEEEEcCCCCEEEEEE
Confidence 4566788899999999999999863 56789999842 2110 000 0 00111111 1225578999
Q ss_pred eecCCCCCeEEEEEEeCC--CC--ceeeeeeEEEEcCC------CCCcccceeccCCcceeecCCCceEEEEEeeCCCCC
Q psy14540 67 SSVRVEDSGIYQCTATNR--VG--SQTHSADMRVYDAP------GQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPP 136 (291)
Q Consensus 67 ~~~~~~d~G~y~C~~~~~--~~--~~~~~~~l~v~~~~------~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~ 136 (291)
.+++.+|+|.|.|.+.+. .. .....+.|.|.... ..|.. .. ..+....+.+|+.++|.|.+...+|.
T Consensus 84 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~l~~~~~p~~-~v--~~p~~~~v~~g~~~~L~C~~~g~~P~ 160 (230)
T 1ypz_F 84 YSLEEEDEAIYYCSYGEGSSGFHKVFAEGTKLIVIPSDKRLDADISPKP-TI--FLPSVAETNLHKTGTYLCLLEAFFPD 160 (230)
T ss_dssp CSCCGGGCSEEEEEECCTTTCCCCEECSCEEEEEECCCTTCCSCCSCCC-CE--ECCCHHHHHHHSCEEEEEEEEEESSC
T ss_pred CcCChhhCEEEEEEEECCCCCcccccCCCEEEEEecccccCcccCCCCc-eE--ECCCchhhccCCcceEEEEEeeecCC
Confidence 999999999999999864 11 12344577776211 01111 11 11233345678999999999655575
Q ss_pred -ceeEEeE-CCEecc
Q psy14540 137 -LTISWLK-NGLPIL 149 (291)
Q Consensus 137 -~~~~W~~-~~~~~~ 149 (291)
+.+.|++ +|..+.
T Consensus 161 ~~~v~W~~~~g~~l~ 175 (230)
T 1ypz_F 161 VIRVYWKEKDGNTIL 175 (230)
T ss_dssp CCEEEEECTTSSCBC
T ss_pred CeEEEEEccCCeEcc
Confidence 6999999 776664
No 252
>3qhz_H Human monoclonal antibody DEL2D1, FAB heavy chain; immunoglobulin, immune recognition, influenza A hemagglutini system; 1.55A {Homo sapiens} PDB: 3lzf_H* 3qrg_H* 3mod_H 3mob_H 3moa_H 3lev_H* 3idg_B 3d0l_B 3d0v_B 3idi_B 3idj_B 3idm_B* 3idn_B* 1tjg_H* 1tjh_H* 1tji_H* 2pr4_H 3drq_B 2p8m_B 2p8p_B ...
Probab=99.78 E-value=4.2e-18 Score=126.51 Aligned_cols=185 Identities=22% Similarity=0.317 Sum_probs=104.3
Q ss_pred eecceeeeecCCcEEEEEEecCC--CCCee--EEEECC--ee---c-----CC------------CeeEeceEEeeccce
Q psy14540 7 YKFIQQTLQPGPPVSLKCIATGN--PTPHI--SWKLDG--YP---L-----AG------------DRFVMGQYMSLHGDV 60 (291)
Q Consensus 7 ~~~~~~~v~~g~~v~l~C~~~~~--~~~~v--~W~~~~--~~---~-----~~------------~~~~~~~~~~~~~~~ 60 (291)
..|....+.+|++++|.|.+.+. +...+ .|++.. .. + .. +++.. .......
T Consensus 5 ~~~~~~~v~~G~~v~L~C~~~~~~~~~~~i~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~---~~~~~~~ 81 (232)
T 3qhz_H 5 RESGPALVKPTQTLTLTCSFSGFSLSTSGMSVSWIRQPPGKALEWLALIDWDDDTYYITYSSSLKTRLTI---SKDTSKS 81 (232)
T ss_dssp EEECCSEECTTSCEEEEEEEESCGGGCTTCEEEEEEECTTSCCEEEEEEESSSSCEEECCCTTTTTTEEE---EEETTTT
T ss_pred EcCCCEEECCCCcEEEEEEEeCcccccceeEeEEEEECCCCCcEEEEEEECCCCccccccCccccCceEE---EeccCCC
Confidence 34556789999999999999753 22345 999832 11 1 00 11111 1111235
Q ss_pred EEEEEEeecCCCCCeEEEEEEeCCC--------CceeeeeeEEEEcCC-CCCcccceeccCCcceeecCCCceEEEEEee
Q psy14540 61 ISHVNISSVRVEDSGIYQCTATNRV--------GSQTHSADMRVYDAP-GQPQDVKLVTSNSRSIKVHSGDRAGVQCLVT 131 (291)
Q Consensus 61 ~~~l~i~~~~~~d~G~y~C~~~~~~--------~~~~~~~~l~v~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~ 131 (291)
.++|.|.+++.+|+|.|.|.+.+.. ........+.|.... ..| ..... .....+..|+.++|.|.+.
T Consensus 82 ~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P---~v~~~-~~~~~~~~g~~v~L~C~~~ 157 (232)
T 3qhz_H 82 QVVLTMTNMDPVDTATYYCARTLRVSGDYVRDFDLWGRGTLVTVSSASTKGP---SVFPL-APSSKSTSGGTAALGCLVK 157 (232)
T ss_dssp EEEEEECSCCGGGCEEEEEEEECCC---CCCCCCEECCCEEEEECSSCCBCC---EEEEE-CC-------CEEEEEEEEE
T ss_pred EEEEEECcCChhhCEEEEEEEeeccCccccccceeeCCCeEEEEecCCCCCC---EEEEe-cccccccCCCcEEEEEEEe
Confidence 5789999999999999999998652 223344566775322 111 11111 1223455799999999996
Q ss_pred CCCC-CceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeee
Q psy14540 132 KGDP-PLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATL 210 (291)
Q Consensus 132 ~~~p-~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~ 210 (291)
.++| ...+.|++++..+...... ......|.|.. .+.|.|...
T Consensus 158 ~~~P~~~~v~W~~~g~~~~~~~~~----------------~~~~~~g~~~~--------------------~s~L~i~~~ 201 (232)
T 3qhz_H 158 DYFPEPVTVSWNSGALTSGVHTFP----------------AVLQSSGLYSL--------------------SSVVTVPSS 201 (232)
T ss_dssp EEBSSCCEEEEGGGTBCTTEEECC----------------CEECTTSCEEE--------------------EEEEEEEGG
T ss_pred eEeCCCeEEEEEECCEecceeecc----------------ceeCCCCCEEE--------------------EEEEEEchh
Confidence 5555 4578899988643211000 00112234432 245677777
Q ss_pred ecCCCeeEEEEeeeCCccCCceeEE
Q psy14540 211 STGHSGNYTCVASNTVASDNHSSNL 235 (291)
Q Consensus 211 ~~~~~g~y~C~~~~~~~~~~~~~~l 235 (291)
..+| |.|+|.|.|..+.......|
T Consensus 202 ~~~~-g~ytC~v~~~~~~~~~~~~l 225 (232)
T 3qhz_H 202 SLGT-QTYICNVNHKPSNTKVDKRV 225 (232)
T ss_dssp GGGT-CCCEEEEEEGGGTEEEEEEC
T ss_pred hcCC-CEEEEEEEeCCCCccEEEEe
Confidence 7777 88888888876554444433
No 253
>3tv3_H PGT128 heavy chain, IG gamma-1 chain C region; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_H* 3twc_H* 3tje_H* 3thm_H* 4fqq_H 2xzc_H* 2xza_H* 3b2u_H* 3b2v_H* 3mly_H 3mlz_H 4fq2_H 2ykl_H* 3tnm_H 4fqc_H* 4fq1_H* 2yk1_H* 3mlx_H 2jix_D 2vxq_H ...
Probab=99.78 E-value=4.4e-18 Score=126.86 Aligned_cols=139 Identities=19% Similarity=0.227 Sum_probs=82.6
Q ss_pred eecceeeeecCCcEEEEEEecCCC----CCeeEEEECC--eecCCC-eeE-----------------eceEE--eeccce
Q psy14540 7 YKFIQQTLQPGPPVSLKCIATGNP----TPHISWKLDG--YPLAGD-RFV-----------------MGQYM--SLHGDV 60 (291)
Q Consensus 7 ~~~~~~~v~~g~~v~l~C~~~~~~----~~~v~W~~~~--~~~~~~-~~~-----------------~~~~~--~~~~~~ 60 (291)
..|..+.+.+|++++|.|.+.+.+ ...+.|++.. .....- ... ..+.. ......
T Consensus 5 ~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~ 84 (239)
T 3tv3_H 5 QESGPTLVEASETLSLTCAVSGDSTAACNSFWGWVRQPPGKGLEWVGSLSHCASYWNRGWTYHNPSLKSRLTLALDTPKN 84 (239)
T ss_dssp EEESCSEECTTSCEEEEEEEESSCTTSSSCEEEEEEECTTSCCEEEEEEECCCCTTSSCEEEECTTTGGGEEEEEEGGGT
T ss_pred ecCCCEEEcCCCCEEEEEEEcCCcccccceEEEEEEECCCCCcEEEEEEecccccccCCceecCccccCCEEEEEECCCC
Confidence 446678899999999999998644 4479999832 111000 000 01111 111234
Q ss_pred EEEEEEeecCCCCCeEEEEEEeCCCC-------------ceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEE
Q psy14540 61 ISHVNISSVRVEDSGIYQCTATNRVG-------------SQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQ 127 (291)
Q Consensus 61 ~~~l~i~~~~~~d~G~y~C~~~~~~~-------------~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~ 127 (291)
.++|.|.+++.+|+|.|.|.+.+..+ .......+.|...+..+ +... ..+....+..|+.++|.
T Consensus 85 ~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~w~~~~~~~~~~~~t~l~V~~~~~~~--P~v~-~~~~~~~~~~g~~v~l~ 161 (239)
T 3tv3_H 85 LVFLKLNSVTAADTATYYCARFGGEVLRYTDWPKPAWVDLWGRGTLVTVSSASTKG--PSVF-PLAPSSKSTSGGTAALG 161 (239)
T ss_dssp EEEEEECSCCGGGCEEEEEEEEEEECSSCSSSCEEEEEEEECCCEEEEECCCCCBC--CEEE-EECCCCCC--TTEEEEE
T ss_pred EEEEEECCCChhhCEEEEEEEecCccccccccccccceeeeCCCcEEeeccCCCcC--CEEE-EECCChhhccCCcEEEE
Confidence 57899999999999999999875421 12233456665322111 1111 11122334579999999
Q ss_pred EEeeCCCCCc-eeEEeECCEec
Q psy14540 128 CLVTKGDPPL-TISWLKNGLPI 148 (291)
Q Consensus 128 C~~~~~~p~~-~~~W~~~~~~~ 148 (291)
|.+..++|.+ .+.|++++..+
T Consensus 162 C~~~~~~p~~~~v~W~~~g~~~ 183 (239)
T 3tv3_H 162 CLVKDYFPEPVTVSWNSGALTS 183 (239)
T ss_dssp EEEEEEBSSCCEEEEGGGTBCT
T ss_pred EEEeeEeCCCeEEEEEECCccC
Confidence 9996556644 58999988643
No 254
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Probab=99.77 E-value=4.2e-18 Score=120.83 Aligned_cols=117 Identities=18% Similarity=0.209 Sum_probs=84.9
Q ss_pred CcceeecCCCceEEEEEeeCCCCCce-eEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCC
Q psy14540 113 SRSIKVHSGDRAGVQCLVTKGDPPLT-ISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDN 191 (291)
Q Consensus 113 ~~~~~~~~g~~~~l~C~~~~~~p~~~-~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~ 191 (291)
+....+.+|+.++|.|.+ .+.|.+. +.|++++..+...
T Consensus 14 p~~~~v~~G~~v~L~C~~-~~~p~~~~~~W~~~~~~~~~~---------------------------------------- 52 (175)
T 1fnl_A 14 PQWYSVLEKDSVTLKCQG-AYSPEDNSTQWFHNESLISSQ---------------------------------------- 52 (175)
T ss_dssp SCCSEEETTCCEEEEEEC-CCBTTBCCCEEEETTEEEESS----------------------------------------
T ss_pred CCceeeeCCCcEEEEeeC-CCCCCCcceEEEECCEEccCC----------------------------------------
Confidence 344578899999999998 5766665 8999998766321
Q ss_pred CceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCCCCCCCCcccccCCceEEEEEEeecCCCCce
Q psy14540 192 HSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGPFTFGELMEGVRTQVACVVQSGDLPLS 271 (291)
Q Consensus 192 ~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~g~~v~l~C~~~~~~p~~~ 271 (291)
...|.|.++..+|+|.|+|.+.|..+ +..+.|.|..++.+...+...+.+|+.++|.|.+.++.|++.
T Consensus 53 ----------~~~L~i~~~~~~d~G~Y~C~~~n~~~--s~~~~l~V~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~ 120 (175)
T 1fnl_A 53 ----------ASSYFIDAATVNDSGEYRCQTNLSTL--SDPVQLEVHIGWLLLQAPRWVFKEEDPIHLRCHSWKNTALHK 120 (175)
T ss_dssp ----------CSEEEESSCCGGGCEEEEEECSSSCC--CCCEEEEEECSSEEEECSCSEEETTCCEEEEEEECTTCCCEE
T ss_pred ----------ceEEEEeCCCcccCEEEEEEeeCCcc--cccEEEEEeCCCceeeCCCceecCCCCEEEEEEcCCCCCceE
Confidence 23567777777788888888876433 556677777555444333344889999999999934445569
Q ss_pred EEEEECCEEcc
Q psy14540 272 LQWYKNGLAIS 282 (291)
Q Consensus 272 v~W~~~~~~l~ 282 (291)
+.|+|+|..+.
T Consensus 121 ~~W~k~g~~~~ 131 (175)
T 1fnl_A 121 VTYLQNGKDRK 131 (175)
T ss_dssp EEEEETTEEEE
T ss_pred EEEEECCeEcc
Confidence 99999999884
No 255
>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4
Probab=99.77 E-value=2.9e-18 Score=125.52 Aligned_cols=139 Identities=17% Similarity=0.364 Sum_probs=98.1
Q ss_pred CCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCC
Q psy14540 112 NSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDN 191 (291)
Q Consensus 112 ~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~ 191 (291)
.+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+... ... . ........+.+
T Consensus 7 ~~~~~~v~~G~~v~L~C~~-~~~p~~~v~W~~~~~~~~~~---~~~-~---------~~~~~~~~~r~------------ 60 (212)
T 1f97_A 7 AQSDVQVPENESIKLTCTY-SGFSSPRVEWKFVQGSTTAL---VCY-N---------SQITAPYADRV------------ 60 (212)
T ss_dssp SCSEEEEETTCCEEEECEE-ESCSSEEEEEEEEETTEEEE---EEE-T---------TEECGGGTTTE------------
T ss_pred cCCCeEEEcCCCEEEEeEe-CCCCCcEEEEEECCCceeeE---Eec-C---------CcccccccCcE------------
Confidence 3455788899999999999 57799999999977542100 000 0 00000000000
Q ss_pred CceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCc--cCCceeEEEEecCCCCCCCCccc-ccCCceEEEEEEeecCCC
Q psy14540 192 HSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVA--SDNHSSNLRVNVPPHIGPFTFGE-LMEGVRTQVACVVQSGDL 268 (291)
Q Consensus 192 ~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~--~~~~~~~l~v~~~p~~~~~~~~~-~~~g~~v~l~C~~~~~~p 268 (291)
.. ....|.|.++..+|+|.|+|.+.+..+ ..+..+.|.|..+|.+....... +.+|+.++|.|.+..+.|
T Consensus 61 -----~~--~~~~L~i~~v~~~D~G~Y~C~~~~~~g~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p 133 (212)
T 1f97_A 61 -----TF--SSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGNRAVLTCSEHDGSP 133 (212)
T ss_dssp -----EE--ETTEEEESCCCGGGCEEEEEEEEETTSSSEEEEEEEEEEEBCCCCCEEECCSEEETTSCEEEEEECSCCBS
T ss_pred -----Ee--eceeEEEcccCcccCeEEEEEEEccCCCcccEEEEEEEEEcCCCCcccCCccccCCCCeEEEEEEcccCcC
Confidence 01 126788999999999999999998865 45667788888888776654444 889999999999338999
Q ss_pred CceEEEEECCE-EccC
Q psy14540 269 PLSLQWYKNGL-AISQ 283 (291)
Q Consensus 269 ~~~v~W~~~~~-~l~~ 283 (291)
.+.+.|+++|. .+..
T Consensus 134 ~~~i~W~~~~~~~l~~ 149 (212)
T 1f97_A 134 PSEYSWFKDGISMLTA 149 (212)
T ss_dssp CCEEEEEETTEESBC-
T ss_pred CCEEEEEeCCcccccc
Confidence 99999999999 7764
No 256
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}
Probab=99.77 E-value=5.5e-18 Score=124.68 Aligned_cols=123 Identities=26% Similarity=0.374 Sum_probs=87.0
Q ss_pred cCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCC
Q psy14540 111 SNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASD 190 (291)
Q Consensus 111 ~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~ 190 (291)
..+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+....
T Consensus 23 ~~p~~~~v~~G~~v~L~C~~-~~~p~~~v~W~~~~~~~~~~~-------------------------------------- 63 (218)
T 3k0w_A 23 VNPESKAVLAGQFVKLCCRA-TGHPFVQYQWFKMNKEIPNGN-------------------------------------- 63 (218)
T ss_dssp ECCCCEEEETTSBEEEECEE-TTTTSSEEEEEETTEECTTCC--------------------------------------
T ss_pred ECCCCeEEeCCCcEEEEeee-cCCCCCEEEEEECCEECCCCC--------------------------------------
Confidence 34456788899999999999 788999999999998775321
Q ss_pred CCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCcc-CCceeEEEEecC---------------CCCCCCCccc-ccC
Q psy14540 191 NHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVAS-DNHSSNLRVNVP---------------PHIGPFTFGE-LME 253 (291)
Q Consensus 191 ~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~-~~~~~~l~v~~~---------------p~~~~~~~~~-~~~ 253 (291)
...|.|.++...|+|.|+|.+.+..+. .+..+.|.|... |.+...+... +.+
T Consensus 64 -----------~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s~~~~l~V~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~ 132 (218)
T 3k0w_A 64 -----------TSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMP 132 (218)
T ss_dssp -----------SSEEEETTCCGGGCEEEEEEEECTTCCEECCCEEEEEECCCGGGCTTCCSBCCSSCEEEECCCCEEECT
T ss_pred -----------CCEEEEccCChhhCeEeEEEEEcCCCCceeeEEEEEEEccCcccccccccccCCCceEEECCCceeecC
Confidence 123555555556666666666655432 244455555543 2333333333 889
Q ss_pred CceEEEEEEeecCCCCceEEEEECCEEccCC
Q psy14540 254 GVRTQVACVVQSGDLPLSLQWYKNGLAISQP 284 (291)
Q Consensus 254 g~~v~l~C~~~~~~p~~~v~W~~~~~~l~~~ 284 (291)
|+.++|.|.+ .+.|.+.+.|+++|..+...
T Consensus 133 G~~v~L~C~~-~g~p~~~v~W~~~~~~~~~~ 162 (218)
T 3k0w_A 133 GSTLVLQCVA-VGSPIPHYQWFKNELPLTHE 162 (218)
T ss_dssp TCCEEEECEE-EBSSCCEEEEEETTEECTTC
T ss_pred CCcEEEEEEe-cccCCCeEEEEECCEECCCC
Confidence 9999999999 88999999999999998654
No 257
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Probab=99.77 E-value=3.9e-18 Score=136.59 Aligned_cols=134 Identities=20% Similarity=0.394 Sum_probs=102.6
Q ss_pred cceeecCCCceEEEEEeeCCCCCceeEEeEC--CEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCC
Q psy14540 114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKN--GLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDN 191 (291)
Q Consensus 114 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~--~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~ 191 (291)
....+.+|+.+.|.|.+ .|.|.+.+.|+++ |..+...... ..+.|.
T Consensus 8 ~~~~~~~G~~v~l~C~~-~g~p~p~v~W~~~~~g~~~~~~~~~--------------------~~~~~~----------- 55 (389)
T 2jll_A 8 KNETTYENGQVTLVCDA-EGEPIPEITWKRAVDGFTFTEGDKS--------------------LDGRIE----------- 55 (389)
T ss_dssp CCEEEETTSEEEEEEEE-ECSSCCEEEEEETTTTEEECC--CC--------------------SSSSEE-----------
T ss_pred CceEEeCCCeEEEEEEe-ecccCCeEEEEeCCCCceeccCcCC--------------------CCCeEE-----------
Confidence 34567789999999999 6899999999999 7776432100 001110
Q ss_pred CceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCCCCCCCCccc-ccCCceEEEEEEeecCCCCc
Q psy14540 192 HSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGPFTFGE-LMEGVRTQVACVVQSGDLPL 270 (291)
Q Consensus 192 ~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~-~~~g~~v~l~C~~~~~~p~~ 270 (291)
+........|.|.++..+|+|.|+|.|.|..|..+..+.|.|..+|.+...+... +.+|+.+.|.|.+ .|.|.+
T Consensus 56 ----~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~P~~~~~~~~~~~~~g~~~~l~C~~-~g~p~~ 130 (389)
T 2jll_A 56 ----VKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKFISNQTIYYSWEGNPINISCDV-KSNPPA 130 (389)
T ss_dssp ----EEECSSEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEEEEEEEEEECCSCCEEEECTTCCEEEEECE-EEESCC
T ss_pred ----EeccCCcceEEEcccChhhCEEEEEEEEeCCCCcceEEEEEEEeCCEEecCcceEEeccCCEEEEEEEE-EecCCC
Confidence 0011124578888899999999999999988888888899999888887765553 7899999999999 888999
Q ss_pred eEEEEECCEEccCC
Q psy14540 271 SLQWYKNGLAISQP 284 (291)
Q Consensus 271 ~v~W~~~~~~l~~~ 284 (291)
.+.|+++|..|...
T Consensus 131 ~i~W~~~g~~l~~~ 144 (389)
T 2jll_A 131 SIHWRRDKLVLPAK 144 (389)
T ss_dssp EEEEEETTEESSCT
T ss_pred eEEEEECCccCCcc
Confidence 99999999998654
No 258
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}
Probab=99.76 E-value=8.6e-18 Score=123.05 Aligned_cols=127 Identities=20% Similarity=0.295 Sum_probs=85.9
Q ss_pred eecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEE
Q psy14540 117 KVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNL 196 (291)
Q Consensus 117 ~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~ 196 (291)
....++.+.|.|.+....|.+.+.|++++..+....+..+...+.
T Consensus 13 l~c~~~~~~l~C~~~~~~p~~~i~W~~~g~~i~~~~~~~~~~~~~----------------------------------- 57 (212)
T 2r15_A 13 IQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGE----------------------------------- 57 (212)
T ss_dssp EEECSSEEEEEEEBSSCCSSCEEEEEETTEECCCCSSEEEEEETT-----------------------------------
T ss_pred EEEcCceEEEEEEEeccCCCceEEEEECCEEccCCCeEEEEEeCC-----------------------------------
Confidence 344778889999984335689999999999887655544332211
Q ss_pred EEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEec--------------------CCCCC-CCCcc-cccCC
Q psy14540 197 RVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNV--------------------PPHIG-PFTFG-ELMEG 254 (291)
Q Consensus 197 ~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~--------------------~p~~~-~~~~~-~~~~g 254 (291)
...|.|.++..+|+|.|+|.+.|..+.....+.|.+.. .|.+. ..+.. .+.+|
T Consensus 58 -----~~~L~i~~v~~~D~G~Y~C~~~n~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g 132 (212)
T 2r15_A 58 -----QIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEG 132 (212)
T ss_dssp -----EEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHSCEEEEBCCSEEEEETT
T ss_pred -----EEEEEECCCCcccCEEEEEEEecCCcceEEEEEEEEeeccchhhhccccCcccccccCCCcccccCCCcEEEccC
Confidence 23466666666677777777776555544444444331 22222 22222 28899
Q ss_pred ceEEEEEEeecCCCCceEEEEECCEEccCC
Q psy14540 255 VRTQVACVVQSGDLPLSLQWYKNGLAISQP 284 (291)
Q Consensus 255 ~~v~l~C~~~~~~p~~~v~W~~~~~~l~~~ 284 (291)
+.+.|.|.+ .+.|.|.+.|+++|.++...
T Consensus 133 ~~~~l~C~~-~g~p~p~v~W~~~~~~~~~~ 161 (212)
T 2r15_A 133 KALNLTCNV-WGDPPPEVSWLKNEKALAQT 161 (212)
T ss_dssp CCEEEEEEE-ECSSCCEEEEEETTEEECCC
T ss_pred CeEEEEEEE-cCCCCceEEEEECCeECccC
Confidence 999999999 89999999999999998754
No 259
>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A
Probab=99.76 E-value=1.8e-17 Score=136.15 Aligned_cols=137 Identities=16% Similarity=0.194 Sum_probs=84.9
Q ss_pred cceeeeecCCcEEEEEEecCCCC---CeeEEEECCeecCCCeeEeceEEeecc--ceEEEEEEeecCCCCCeEEEEEEeC
Q psy14540 9 FIQQTLQPGPPVSLKCIATGNPT---PHISWKLDGYPLAGDRFVMGQYMSLHG--DVISHVNISSVRVEDSGIYQCTATN 83 (291)
Q Consensus 9 ~~~~~v~~g~~v~l~C~~~~~~~---~~v~W~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~y~C~~~~ 83 (291)
|....+.+|+.+.|.|.+.+.++ +.+.| . +..+....... ......+ ...+.|.|.+++..|+|.|+|.+.+
T Consensus 254 p~~~~~~~G~~v~L~C~~~g~~p~~~~~i~W-~-~~~~~~~~~~~-~~~~~~g~~~~~~~L~I~~~~~~d~G~Y~C~a~n 330 (475)
T 1iga_A 254 PALEDLLLGSEANLTCTLTGLRDASGVTFTW-T-PSSGKSAVQGP-PERDLCGCYSVSSVLPGCAEPWNHGKTFTCTAAY 330 (475)
T ss_pred CChHHhccCCceEEEEEEEcccCCCceEEEE-C-CCCcCCccccC-ceECCCCCEEEEEEEEEchHHhccCCcEEEEEEc
Confidence 33334689999999999987533 68999 4 43333111000 0000011 2446799999999999999999998
Q ss_pred CCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCC-CceeEEeECCEeccCC
Q psy14540 84 RVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDP-PLTISWLKNGLPILSD 151 (291)
Q Consensus 84 ~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p-~~~~~W~~~~~~~~~~ 151 (291)
..+.......+.+......| ......+....+.+|+.+.|.|.+.+.+| .+.+.|+++|..+...
T Consensus 331 ~~~~~~~~~~v~~~~~~~~P---~v~~~~~~~~~v~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~ 396 (475)
T 1iga_A 331 PESKTPLTATLSKSGNTFRP---EVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPRE 396 (475)
T ss_pred CCCCCceEEEeecCCCCCCC---eEEEECCChHHhccCCceEEEEEEeeeECCCCEEEEEECCEECCCC
Confidence 87765443344321112122 11112222234668999999999954345 3599999999988654
No 260
>3u2s_H PG9 heavy chain; greek KEY, immunoglobulin, immune recognition, immune system; HET: PCA TYS BU3 NAG BMA MAN; 1.80A {Homo sapiens} PDB: 3u4e_H* 3u36_H 3mug_B* 3lrs_H* 3mme_H* 2qsc_H*
Probab=99.76 E-value=5.2e-18 Score=127.01 Aligned_cols=183 Identities=22% Similarity=0.338 Sum_probs=106.0
Q ss_pred eeecceeeeecCCcEEEEEEecC--CCCCeeEEEECC--ee---c---C------------CCeeEeceEEeeccceEEE
Q psy14540 6 IYKFIQQTLQPGPPVSLKCIATG--NPTPHISWKLDG--YP---L---A------------GDRFVMGQYMSLHGDVISH 63 (291)
Q Consensus 6 ~~~~~~~~v~~g~~v~l~C~~~~--~~~~~v~W~~~~--~~---~---~------------~~~~~~~~~~~~~~~~~~~ 63 (291)
+..|....+.+|++++|.|.+.+ .+...+.|++.. .. + . .+++.. ........++
T Consensus 3 l~~~~~v~v~~G~~v~L~C~~s~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~---~~~~~~~~~s 79 (248)
T 3u2s_H 3 LVESGGGVVQPGSSLRLSCAASGFDFSRQGMHWVRQAPGQGLEWVAFIKYDGSEKYHADSVWGRLSI---SRDNSKDTLY 79 (248)
T ss_dssp EEEECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEE---EEEGGGTEEE
T ss_pred eecCCCEEEeCCCCEEEEEEeccccCCccEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEE---EecCCCCEEE
Confidence 45677789999999999999975 234679999832 11 1 0 011111 1111234678
Q ss_pred EEEeecCCCCCeEEEEEEeCCC----------------------CceeeeeeEEEEcC-CCCCcccceeccCCcceeecC
Q psy14540 64 VNISSVRVEDSGIYQCTATNRV----------------------GSQTHSADMRVYDA-PGQPQDVKLVTSNSRSIKVHS 120 (291)
Q Consensus 64 l~i~~~~~~d~G~y~C~~~~~~----------------------~~~~~~~~l~v~~~-~~~~~~~~~~~~~~~~~~~~~ 120 (291)
|+|.+++.+|+|.|.|.+.+.. ......+.+.|... +..| ..... .....+..
T Consensus 80 L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~P---~v~~~-~~~~~~~~ 155 (248)
T 3u2s_H 80 LQMNSLRVEDTATYFCVREAGGPDYRNGYNYYDFYDGYYNYHYMDVWGKGTTVTVSSASTKGP---SVFPL-APSSKSTS 155 (248)
T ss_dssp EEECSCCGGGCEEEEEEEEEEECEEETTEEEECGGGCCEEEEEEEEECCCEEEEECSCCCBCC---EEEEE-CCC-----
T ss_pred EEECCCCHHHCEEEEEEEeCCCCccccccccccccccccccccceeeCCCEEEEEcccCCCCC---EEEEe-CCCccccC
Confidence 9999999999999999987531 11223456666532 2122 11111 12223456
Q ss_pred CCceEEEEEeeCCCC-CceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEe
Q psy14540 121 GDRAGVQCLVTKGDP-PLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVN 199 (291)
Q Consensus 121 g~~~~l~C~~~~~~p-~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~ 199 (291)
|+.++|.|.+...+| ...+.|++++..+...... ......|.|.-
T Consensus 156 g~~~~L~C~~~~~~P~~~~v~W~~~g~~~~~~~~~----------------~~~~~~g~~~~------------------ 201 (248)
T 3u2s_H 156 GGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFP----------------AVLQSSGLYSL------------------ 201 (248)
T ss_dssp -CEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECC----------------CEECTTSCEEE------------------
T ss_pred CCcEEEEEEEeeEECCCeEEEEeECCccCceeecC----------------ceECCCCCEEE------------------
Confidence 999999999965566 5689999988643211000 00122344432
Q ss_pred ccceEEEEeeeecCCCeeEEEEeeeCCccCCce
Q psy14540 200 EYTSSLSIATLSTGHSGNYTCVASNTVASDNHS 232 (291)
Q Consensus 200 ~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~ 232 (291)
.+.|.|.....++ |.|+|.|.|..+.....
T Consensus 202 --~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~ 231 (248)
T 3u2s_H 202 --SSVVTVPSSSLGT-QTYICNVNHKPSNTKVD 231 (248)
T ss_dssp --EEEEEEEGGGBTT-BCCEEEEEEGGGTEEEE
T ss_pred --EEEEEEChhhcCC-CeEEEEEEECCCCcceE
Confidence 2356677777777 88888888876544333
No 261
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=99.76 E-value=1.9e-17 Score=108.64 Aligned_cols=97 Identities=24% Similarity=0.346 Sum_probs=82.6
Q ss_pred CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCC-CeeEeceEEeeccceEEEEEEeecCCCCCeEEEEE
Q psy14540 2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAG-DRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCT 80 (291)
Q Consensus 2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~ 80 (291)
||.|...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+.. .++.. ........|.|.+++.+|+|.|+|.
T Consensus 7 pp~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~-----~~~~~~~~L~I~~v~~~D~G~Y~C~ 81 (114)
T 2cqv_A 7 GPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKV-----ENSENGSKLTILAARQEHCGCYTLL 81 (114)
T ss_dssp CCEESCCCCSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCSSSEEE-----EECSSEEEEEETTCCTTTCEEEEEE
T ss_pred CCEEEeCCCCeEEeCCCeEEEEEEEEcCCCCEEEEEECCEECcCCCCEEE-----EEcCCEEEEEECCCChhcCEEEEEE
Confidence 78999999999999999999999999999999999999988873 33332 1223356799999999999999999
Q ss_pred EeCCCCceeeeeeEEEEcCCCCC
Q psy14540 81 ATNRVGSQTHSADMRVYDAPGQP 103 (291)
Q Consensus 81 ~~~~~~~~~~~~~l~v~~~~~~~ 103 (291)
+.|..|.....+.|.|...|..|
T Consensus 82 a~N~~g~~~~~~~l~V~~~p~~P 104 (114)
T 2cqv_A 82 VENKLGSRQAQVNLTVVDKPDPP 104 (114)
T ss_dssp EECSSCEEECCEEEEEECSCSCC
T ss_pred EEECCCcEEEEEEEEEECCCCCC
Confidence 99999988889999999877655
No 262
>3n9g_H FAB fragment of MAB CR4354, heavy chain; human neutralizing antibody, immun anti-WEST NIle virus; 1.43A {Homo sapiens} PDB: 3iyw_H 3qeh_A 3sqo_H 4hk0_A 4hk3_J 4hkx_A* 3u0t_D 3c08_H 3lmj_H 3lqa_H* 3c09_H* 4dn3_H 3pp4_H 3pp3_H 4hkb_J 2jb5_H* 2jb6_B* 2eh7_H 2eh8_H 3jwd_H* ...
Probab=99.76 E-value=1.5e-17 Score=123.35 Aligned_cols=188 Identities=21% Similarity=0.325 Sum_probs=109.2
Q ss_pred eecceeeeecCCcEEEEEEecC--CCCCeeEEEECC--ee---cC---------------CCeeEeceEEeeccceEEEE
Q psy14540 7 YKFIQQTLQPGPPVSLKCIATG--NPTPHISWKLDG--YP---LA---------------GDRFVMGQYMSLHGDVISHV 64 (291)
Q Consensus 7 ~~~~~~~v~~g~~v~l~C~~~~--~~~~~v~W~~~~--~~---~~---------------~~~~~~~~~~~~~~~~~~~l 64 (291)
..|....+.+|++++|.|.+.+ .....+.|++.. .. +. .+++.. ........++|
T Consensus 5 ~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~---~~~~~~~~~sL 81 (230)
T 3n9g_H 5 VQSGAEVRKPGASTKVSCKASGYTFTHYYMHWVRQAPGQGLEWMGIINPSGGSTTYAQKLQGRVTM---TRDTSTSTVYM 81 (230)
T ss_dssp EECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEE---EEETTTTEEEE
T ss_pred EecCCEEEcCCCCEEEEEEeecceecCcEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEE---EecCCCCEEEE
Confidence 3455688999999999999975 234679999732 11 10 011111 11123355789
Q ss_pred EEeecCCCCCeEEEEEEeCCC-----C---ceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCC-
Q psy14540 65 NISSVRVEDSGIYQCTATNRV-----G---SQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDP- 135 (291)
Q Consensus 65 ~i~~~~~~d~G~y~C~~~~~~-----~---~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p- 135 (291)
.|.+++.+|+|.|.|.+.+.. + .....+.|.|...+..++ ... .......+.+|+.++|.|.+...+|
T Consensus 82 ~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P--~v~-~~~~~~~~~~g~~v~L~C~~~~~~P~ 158 (230)
T 3n9g_H 82 ELSSLRSEDTAVYYCARDWGSNYVWGSYPKYWGQGTLVTVSSASTKGP--SVF-PLAPSSKSTSGGTAALGCLVKDYFPE 158 (230)
T ss_dssp EECSCCGGGCEEEEEEEECCCSSSTTCCEEEECCCEEEEECSSCCBCC--EEE-EECCCCCCCTTCEEEEEEEEEEEBSS
T ss_pred EECCCChhhCEEEEEEEccCCCCcccccccccCCCEEEEEEecCCCCC--EEE-ecCCCccccCCCCEEEEEEEEeEECC
Confidence 999999999999999998643 1 122345667753322111 111 1112223458999999999965566
Q ss_pred CceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCC
Q psy14540 136 PLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHS 215 (291)
Q Consensus 136 ~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~ 215 (291)
.+.+.| ++..+...... ........|.|.- .+.|.|.....+|
T Consensus 159 ~~~v~W--~~~~~~~~~~~--------------~~~~~~~~g~~~~--------------------~s~L~i~~~~~~~- 201 (230)
T 3n9g_H 159 PVTVSW--NSGALTSGVHT--------------FPAVLQSSGLYSL--------------------SSVVTVPSSSLGT- 201 (230)
T ss_dssp CCEEEE--GGGTBCTTEEE--------------CCCEECTTSCEEE--------------------EEEEEEESTTBTT-
T ss_pred CEEEEE--CCcccCCCeEe--------------CCceECCCCCEEE--------------------EEEEEECHHHcCC-
Confidence 567999 55544321100 0000122344432 2457777777777
Q ss_pred eeEEEEeeeCCccCCceeEEEE
Q psy14540 216 GNYTCVASNTVASDNHSSNLRV 237 (291)
Q Consensus 216 g~y~C~~~~~~~~~~~~~~l~v 237 (291)
|.|+|.|.|..+.......+.|
T Consensus 202 ~~ytC~v~h~~~~~~~~~~~~v 223 (230)
T 3n9g_H 202 QTYICNVNHKPSNTKVDKRVEP 223 (230)
T ss_dssp BCCEEEEEEGGGTEEEEEECCC
T ss_pred CeEEEEEEECCCCcceEEEccC
Confidence 8888888887655444444443
No 263
>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine; HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*
Probab=99.76 E-value=2.5e-18 Score=127.62 Aligned_cols=184 Identities=14% Similarity=0.237 Sum_probs=104.2
Q ss_pred cceeecceee-eecCCcEEEEEEecCC---C-CCeeEEEECCeecCCCeeEeceE-EeeccceEEEEEEeecCCCCCeEE
Q psy14540 4 QLIYKFIQQT-LQPGPPVSLKCIATGN---P-TPHISWKLDGYPLAGDRFVMGQY-MSLHGDVISHVNISSVRVEDSGIY 77 (291)
Q Consensus 4 ~~~~~~~~~~-v~~g~~v~l~C~~~~~---~-~~~v~W~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~G~y 77 (291)
.++..|.... +..|+.++|.|.+.+. | ...|+|+++|..+.......... ........+.|.|......|.|.|
T Consensus 25 v~i~~ps~~~~l~~g~~~~L~C~v~g~~p~P~~i~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~~Y 104 (240)
T 4acp_A 25 VFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEY 104 (240)
T ss_dssp EEEECCCHHHHHSSSSCCEEEEEEESCCC--CCCEEEEEETTEEECCCEECCCEEC---CEEEEEEEECCHHHHHHTCCE
T ss_pred EEEECcChHHhcccCCCcEEEEEEeccccCCCccEEEEEECCcccCCceeccceECCCCeEEEEEEEEEechhccCCCEE
Confidence 3344555555 6679999999999984 3 44799999999876432111100 001112336788888888889999
Q ss_pred EEEEeCCCCceeeeeeEEE-EcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCc-eeEEeECCEeccCCCceE
Q psy14540 78 QCTATNRVGSQTHSADMRV-YDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPL-TISWLKNGLPILSDAEIT 155 (291)
Q Consensus 78 ~C~~~~~~~~~~~~~~l~v-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~~~~~~~~~~~~~ 155 (291)
+|.+.+..+.......+.. ......| ......+... ...|+.++|.|.+.+.+|.+ .+.|+++|..+.....
T Consensus 105 tC~v~h~~~~~~~~~~i~~~~~~~~~P---~V~v~~~~~~-~~~g~~~~L~C~~~gf~P~~i~v~W~k~g~~~~~~~~-- 178 (240)
T 4acp_A 105 KCKVSNKALPAPIEKTISKAKGQPREP---QVYTLPPSRD-ELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKA-- 178 (240)
T ss_dssp EEEEECC----CEEEEECCCCSCCBCC---EEEEECCCGG-GGGSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEE--
T ss_pred EEEEEcCCCCccccccccccCCCCCCC---EEEEECCChH-HhcCCceEEEEEEeEEeCCCcEEEEEECCEECCCcCc--
Confidence 9999987653222222211 1111111 1111222211 22488999999996556764 8999999987632110
Q ss_pred EeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCC
Q psy14540 156 IRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTV 226 (291)
Q Consensus 156 ~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~ 226 (291)
.....+..|.|.- .+.|.+.....+++|.|+|.|.+..
T Consensus 179 -------------~~~~~~~dgt~~~--------------------~s~L~v~~~~~~~~~~ytC~V~h~~ 216 (240)
T 4acp_A 179 -------------TPPVLDSDGSFFL--------------------YSKLTVDKSRWQQGNVFSCSVMHEA 216 (240)
T ss_dssp -------------CCCEECTTSCEEE--------------------EEEEEEEHHHHHTTCCEEEEEECTT
T ss_pred -------------cCceECCCCCEEE--------------------EEEEEEChHHhCCCCEEEEEEEECC
Confidence 0011122344432 2346666666667888888888765
No 264
>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus receptor, cell adhesion, integrin ligand, glycopr LFA-1 ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A 1d3e_I 1d3i_I 3tcx_A
Probab=99.76 E-value=2.4e-16 Score=110.76 Aligned_cols=129 Identities=18% Similarity=0.219 Sum_probs=88.5
Q ss_pred ceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCC
Q psy14540 5 LIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNR 84 (291)
Q Consensus 5 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~ 84 (291)
+.+.|....|.+|+++.|.|.+....+..+.|.-. +.... . ...+.....|.|.+++. | |.|.|.+...
T Consensus 2 v~v~P~~~~V~~G~Sv~l~Cs~~c~~p~~~~~~t~---l~~~~--~----~~~~~~~~~l~l~~vs~-~-g~y~C~~~c~ 70 (185)
T 1iam_A 2 TSVSPSKVILPRGGSVLVTCSTSCDQPKLLGIETP---LPKKE--L----LLPGNNRKVYELSNVQE-D-SQPMCYSNCP 70 (185)
T ss_dssp EEEESSEEEEETTEEEEEEEEECSSSCSEEEEECS---SCEEE--E----CSSSSSEEEEEEEEECS-C-BCCEEEEECS
T ss_pred eEEECCCcEEeCCCCEEEEEEccCCCCccceEEee---CCCcc--E----eccCCceeEEEEEecCc-C-CEEEEEEECC
Confidence 45678888899999999999997433333777531 11000 0 01122335578999984 4 9999999765
Q ss_pred CCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCc--eeEEeECCEeccC
Q psy14540 85 VGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPL--TISWLKNGLPILS 150 (291)
Q Consensus 85 ~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~--~~~W~~~~~~~~~ 150 (291)
.....+.+.+.|+..|..+ ...+....+.+|+.++|.|.+.++.|.. .|+||+++..+..
T Consensus 71 ~~~~~~~~~l~V~~~P~~v------~i~~~~~~~~~G~~~tL~C~v~g~~P~~~l~i~w~kg~~~l~~ 132 (185)
T 1iam_A 71 DGQSTAKTFLTVYWTPERV------ELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKR 132 (185)
T ss_dssp SCEEEEECEEEEEBCCSEE------EECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEE
T ss_pred CCceEEEEEEEEeCCCCCC------EEccCCccccCCCcEEEEEEcCCccCCCCcEEEEEeCCEEccc
Confidence 5567888899999876321 1122223478999999999997778875 5899999988743
No 265
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A
Probab=99.76 E-value=1.4e-17 Score=120.83 Aligned_cols=122 Identities=20% Similarity=0.281 Sum_probs=88.4
Q ss_pred eeecCCCceEEEEEeeCCCCCceeEEeECC-EeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCce
Q psy14540 116 IKVHSGDRAGVQCLVTKGDPPLTISWLKNG-LPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSS 194 (291)
Q Consensus 116 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~-~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~ 194 (291)
..+.+|+.++|.|.+ .|.|.+.+.|++.. .++. ....
T Consensus 11 ~~~~~G~~v~L~C~~-~g~P~p~i~W~~~~~~~~~--~~~~--------------------------------------- 48 (202)
T 1vca_A 11 YLAQIGDSVSLTCST-TGCESPFFSWRTQIDSPLN--GKVT--------------------------------------- 48 (202)
T ss_dssp EEEETTSCEEEEEEE-ESCSSCEEEEEETTCCCCS--SEEE---------------------------------------
T ss_pred EEEcCCCcEEEEEee-cCCCCCeEEEECCCCCCcc--ceEE---------------------------------------
Confidence 455699999999999 68899999998842 1110 0000
Q ss_pred EEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCCCCCCC-CcccccCCceEEEEEEeecCCCC--ce
Q psy14540 195 NLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGPF-TFGELMEGVRTQVACVVQSGDLP--LS 271 (291)
Q Consensus 195 ~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p~~~~~-~~~~~~~g~~v~l~C~~~~~~p~--~~ 271 (291)
.......|.|.++..+|+|.|.|.|.|..+..+..+.|.|..+|..... +...+.+|+.++|+|.+.++.|. ++
T Consensus 49 ---~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~G~~~~L~C~~~~~~p~~~~~ 125 (202)
T 1vca_A 49 ---NEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQVEIYSFPKDPEIHLSGPLEAGKPITVKCSVADVYPFDRLE 125 (202)
T ss_dssp ---EETTEEEEEESSCCGGGCSEEEEEEEETTEEEEEEEEEEEEBCCSCCEEEESSCEETTSCEEEEEEEEEEBSGGGEE
T ss_pred ---EcCCccEEEECcCCHHHCEEEEEEEEECCceEeeEEEEEEEeCCCCCEeCCceEEcCCCCEEEEEEECCcCCCCCeE
Confidence 0011345788888888999999999988877777888999877654332 22338999999999999544554 48
Q ss_pred EEEEECCEEcc
Q psy14540 272 LQWYKNGLAIS 282 (291)
Q Consensus 272 v~W~~~~~~l~ 282 (291)
|.|+|||..|.
T Consensus 126 i~W~k~~~~l~ 136 (202)
T 1vca_A 126 IDLLKGDHLMK 136 (202)
T ss_dssp EEEEETTEEEE
T ss_pred EEEEeCCeECc
Confidence 99999999874
No 266
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A
Probab=99.75 E-value=3e-17 Score=115.88 Aligned_cols=117 Identities=21% Similarity=0.279 Sum_probs=86.5
Q ss_pred CcceeecCCCceEEEEEeeCCCC-CceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCC
Q psy14540 113 SRSIKVHSGDRAGVQCLVTKGDP-PLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDN 191 (291)
Q Consensus 113 ~~~~~~~~g~~~~l~C~~~~~~p-~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~ 191 (291)
+....+.+|+.+.|.|.+ .+.| .+.+.|++++..+....
T Consensus 11 p~~~~v~~G~~v~l~C~~-~~~p~~~~~~W~~~g~~~~~~~--------------------------------------- 50 (170)
T 3ry4_A 11 PPWINVLQEDSVTLTCQG-ARSPESDSIQWFHNGNLIPTHT--------------------------------------- 50 (170)
T ss_dssp SCCSEEETTCEEEEEEES-CCCSSSSCEEEEETTEECTTCC---------------------------------------
T ss_pred CCCeEEECCCcEEEEEEe-cCCCCcceEEEEECCeEcccCc---------------------------------------
Confidence 344568899999999999 4555 67999999998875431
Q ss_pred CceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCCCCCCCCcccccCCceEEEEEEeecCCCCce
Q psy14540 192 HSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGPFTFGELMEGVRTQVACVVQSGDLPLS 271 (291)
Q Consensus 192 ~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~g~~v~l~C~~~~~~p~~~ 271 (291)
..+.+.++..+|+|.|+|.+.+.. .+..+.|.|..+|.+...+...+.+|+.+.|.|.+..+.|.+.
T Consensus 51 -----------~~~~~~~~~~~d~G~Y~C~~~~~~--~s~~~~l~v~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~ 117 (170)
T 3ry4_A 51 -----------QPSYRFKANNNDSGEYTCQTGQTS--LSDPVHLTVLFEWLVLQTPHLEFQEGETIMLRCHSWKDKPLVK 117 (170)
T ss_dssp -----------SSEEEEECCGGGCEEEEEEETTSB--CCCCEEEEEECCSEEEECSCSEECTTCCEEEEEEEGGGCCEEE
T ss_pred -----------cceEEEecccccCeEEEEEEeCCC--ceEeEEEEEECCceEecCCCceeecCCeEEEEEECCCCCCCce
Confidence 123344566777888888887643 3445677777766555444445889999999999966777799
Q ss_pred EEEEECCEEcc
Q psy14540 272 LQWYKNGLAIS 282 (291)
Q Consensus 272 v~W~~~~~~l~ 282 (291)
+.|+++|..+.
T Consensus 118 ~~W~~~g~~~~ 128 (170)
T 3ry4_A 118 VTFFQNGKSQK 128 (170)
T ss_dssp EEEEETTEEEE
T ss_pred EEEEECCeEcc
Confidence 99999999874
No 267
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*
Probab=99.75 E-value=5.1e-18 Score=120.54 Aligned_cols=117 Identities=20% Similarity=0.237 Sum_probs=85.2
Q ss_pred CcceeecCCCceEEEEEeeCCCCCc-eeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCC
Q psy14540 113 SRSIKVHSGDRAGVQCLVTKGDPPL-TISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDN 191 (291)
Q Consensus 113 ~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~ 191 (291)
+....+.+|+.++|.|.+ .+.+.+ .+.|++++..+...
T Consensus 11 p~~~~v~~G~~v~L~C~~-~~~~~~~~i~W~~~~~~~~~~---------------------------------------- 49 (176)
T 1f2q_A 11 PPWNRIFKGENVTLTCNG-NNFFEVSSTKWFHNGSLSEET---------------------------------------- 49 (176)
T ss_dssp SSCSEEETTCCEEEECCT-TCC----CCEEEETTEECSCC----------------------------------------
T ss_pred CCCcceecCCcEEEEEeC-CCCCCcceEEEEECCeECCCC----------------------------------------
Confidence 344678899999999998 566654 79999999876421
Q ss_pred CceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCCCCCCCCcccccCCceEEEEEEeecCCCCce
Q psy14540 192 HSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGPFTFGELMEGVRTQVACVVQSGDLPLS 271 (291)
Q Consensus 192 ~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~g~~v~l~C~~~~~~p~~~ 271 (291)
...|.|.++..+|+|.|+|.+.|..+ +..+.|.|..++.+...+...+.+|+.++|.|.+..+.|.+.
T Consensus 50 ----------~~~L~i~~v~~~d~G~Y~C~~~~~~~--s~~~~l~V~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~ 117 (176)
T 1f2q_A 50 ----------NSSLNIVNAKFEDSGEYKCQHQQVNE--SEPVYLEVFSDWLLLQASAEVVMEGQPLFLRCHGWRNWDVYK 117 (176)
T ss_dssp ----------SSEEEECSCCGGGCEEEEEECTTSSC--CCCEEEEEECSSEEEEESCSEEETTSCEEEEEEEGGGCCEEE
T ss_pred ----------ceEEEEeccceecCEEEEEEcCCccc--cccEEEEEeCcceeecCCcceeeCCCCEEEEEEecCCCCceE
Confidence 23567777777788888888876543 445666666554443334444889999999999966778889
Q ss_pred EEEEECCEEcc
Q psy14540 272 LQWYKNGLAIS 282 (291)
Q Consensus 272 v~W~~~~~~l~ 282 (291)
+.|++||..+.
T Consensus 118 ~~W~~~g~~~~ 128 (176)
T 1f2q_A 118 VIYYKDGEALK 128 (176)
T ss_dssp EEEEETTEECC
T ss_pred EEEEECCEEEe
Confidence 99999999884
No 268
>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}
Probab=99.75 E-value=8.8e-18 Score=121.46 Aligned_cols=121 Identities=15% Similarity=0.221 Sum_probs=75.5
Q ss_pred eecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEE
Q psy14540 117 KVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNL 196 (291)
Q Consensus 117 ~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~ 196 (291)
.+.+|+.++|.|.+ .+.|. .+.|++++..+..... .....
T Consensus 15 ~v~~G~~v~L~C~~-~~~~~-~~~W~k~g~~~~~~~~--~~~~~------------------------------------ 54 (196)
T 2d3v_A 15 VISRGNSVTIRCQG-TLEAQ-EYRLVKEGSPEPWDTQ--NPLEP------------------------------------ 54 (196)
T ss_dssp EEETTCCEEEEEEC-CTTCC-EEEEEETTCSSCSEEE--CCCSS------------------------------------
T ss_pred cccCCCeEEEEEeC-CCCCc-EEEEEECCCCCCcccc--cccCC------------------------------------
Confidence 67899999999998 56665 9999999976632100 00000
Q ss_pred EEeccceEEEEeeeecCCCeeEEEEeeeCCcc--CCceeEEEEec---CCCCCCCCcccccCCceEEEEEEeecCCCCce
Q psy14540 197 RVNEYTSSLSIATLSTGHSGNYTCVASNTVAS--DNHSSNLRVNV---PPHIGPFTFGELMEGVRTQVACVVQSGDLPLS 271 (291)
Q Consensus 197 ~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~--~~~~~~l~v~~---~p~~~~~~~~~~~~g~~v~l~C~~~~~~p~~~ 271 (291)
.....|.|.++..+|+|.|+|.+.|..+. .+..+.|.|.. +|.+...+...+.+|+.++|.|.+ .+.| +.
T Consensus 55 ---~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~~l~V~~~~~~p~i~~~~~~~v~~G~~v~L~C~~-~~~p-~~ 129 (196)
T 2d3v_A 55 ---KNKARFSIPSMTEHHAGRYRCYYYSPAGWSEPSDPLELVVTGFYNKPTLSALPSPVVTSGENVTLQCGS-RLRF-DR 129 (196)
T ss_dssp ---TTEEEEEESSCCGGGCEEEEEEEEETTEECBCCCCEEEEEECSSCCCEEEC-----------CEEEEEE-SSCC-SE
T ss_pred ---ccccEEEeccCChhHCeEEEEEEeCCCCcCCcCccEEEEecCCCCCCeEEccCCccccCCCcEEEEEEc-CCCC-CE
Confidence 11345777777778888888888776642 35567777765 455544443348999999999999 7777 89
Q ss_pred EEEEECCEEcc
Q psy14540 272 LQWYKNGLAIS 282 (291)
Q Consensus 272 v~W~~~~~~l~ 282 (291)
+.|+|+|..+.
T Consensus 130 ~~W~k~g~~~~ 140 (196)
T 2d3v_A 130 FILTEEGDHKL 140 (196)
T ss_dssp EEEEEC---CC
T ss_pred EEEEccCCccc
Confidence 99999998774
No 269
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G
Probab=99.75 E-value=5.6e-18 Score=123.70 Aligned_cols=140 Identities=16% Similarity=0.352 Sum_probs=98.6
Q ss_pred cCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCC
Q psy14540 111 SNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASD 190 (291)
Q Consensus 111 ~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~ 190 (291)
..+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+..... .. . .+.....+
T Consensus 9 ~~~~~~~v~~G~~v~L~C~~-~~~p~~~v~W~~~~~~~~~~~~-----~~---~-----~~~~~~~~------------- 61 (209)
T 1nbq_A 9 SSEPEVRIPENNPVKLSCAY-SGFSSPRVEWKFDQGDTTRLVC-----YN---N-----KITASYED------------- 61 (209)
T ss_dssp CSCSBCCEETTCCCEEECEE-ESCSSEEEEEEEEETTEEEESE-----ET---T-----EECTTTTT-------------
T ss_pred cCCCceEEEcCCCEEEEEEE-eCCCCcEEEEEEcCCceeEEEE-----ec---C-----ccCccccC-------------
Confidence 34455778899999999999 5778999999997754211000 00 0 00000000
Q ss_pred CCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCc--cCCceeEEEEecCCCCCCCCccc-ccCCceEEEEEEeecCC
Q psy14540 191 NHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVA--SDNHSSNLRVNVPPHIGPFTFGE-LMEGVRTQVACVVQSGD 267 (291)
Q Consensus 191 ~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~--~~~~~~~l~v~~~p~~~~~~~~~-~~~g~~v~l~C~~~~~~ 267 (291)
... . ....|.|.++..+|+|.|+|.+.+..+ ..+..+.|.|..+|.+....... +.+|+.++|.|.+..+.
T Consensus 62 --r~~--~--~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~ 135 (209)
T 1nbq_A 62 --RVT--F--LPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATIGNRAVLTCSEQDGS 135 (209)
T ss_dssp --TCE--E--ETTEEECSCCCTTSCSEEEEEEEETTSSCEECCEEECCEEBCCCCCCCCCBSEEETTSCEEECCCCCSCB
T ss_pred --ceE--e--eccEEEEeeCCHHHCcEEEEEEecCCCCccceEEEEEEEecCCcCCCcccccceecCCEEEEEEeCCCCC
Confidence 000 0 126788899999999999999998754 45567788888888776655544 89999999999965789
Q ss_pred CCceEEEEECCEEccC
Q psy14540 268 LPLSLQWYKNGLAISQ 283 (291)
Q Consensus 268 p~~~v~W~~~~~~l~~ 283 (291)
|.+.+.|+++|..+..
T Consensus 136 p~~~v~W~~~~~~~~~ 151 (209)
T 1nbq_A 136 PPSEYTWFKDGIVMPT 151 (209)
T ss_dssp SCCEEEEEETTCCCCS
T ss_pred CCceeEEEECCeeCCC
Confidence 9999999999998865
No 270
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}
Probab=99.75 E-value=3.7e-18 Score=122.70 Aligned_cols=128 Identities=23% Similarity=0.408 Sum_probs=87.6
Q ss_pred CCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCC--ceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCC
Q psy14540 112 NSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDA--EITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVAS 189 (291)
Q Consensus 112 ~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 189 (291)
.+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+.... +....
T Consensus 8 ~~~~~~v~~G~~v~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~-------------------------------- 54 (189)
T 2v5t_A 8 VVSPQEFKQGEDAEVVCRV-SSSPAPAVSWLYHNEEVTTISDNRFAML-------------------------------- 54 (189)
T ss_dssp CCSSEEEETTSCEEECCEE-ECSSCCEEEEEC-----CBCCCTTEEEC--------------------------------
T ss_pred cCCCEEEeCCCcEEEEEEE-cCCCCCEEEEEECCccceeccCCeEEEe--------------------------------
Confidence 3445788899999999999 578889999999987764321 11111
Q ss_pred CCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCcc--CCceeEEEEecCCCCCCCCcc---cccCCceEEEEEEee
Q psy14540 190 DNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVAS--DNHSSNLRVNVPPHIGPFTFG---ELMEGVRTQVACVVQ 264 (291)
Q Consensus 190 ~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~--~~~~~~l~v~~~p~~~~~~~~---~~~~g~~v~l~C~~~ 264 (291)
....|.|.++..+|+|.|+|.+.+..+. ....+.+.+..+|.+...... .+.+|+.++|.|.+
T Consensus 55 -----------~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~- 122 (189)
T 2v5t_A 55 -----------ANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRA- 122 (189)
T ss_dssp -----------TTSCEEETTCCGGGCEEEEEEEEETTTTEEEEEEEEEEEEEEEEEECSCCEEEEETTSCCCEEEECEE-
T ss_pred -----------cCCCEEEeeCCHhHCcEEEEEEEEcCCCceEEEEEEEEecCCCCcccccccccccccCCCcEEEEEEE-
Confidence 1234667777777777777777776532 224455666666655544332 28899999999999
Q ss_pred cCCCCceEEEEECCEEccCC
Q psy14540 265 SGDLPLSLQWYKNGLAISQP 284 (291)
Q Consensus 265 ~~~p~~~v~W~~~~~~l~~~ 284 (291)
.+.|.+.+.|+++|..+...
T Consensus 123 ~g~p~~~v~W~~~g~~~~~~ 142 (189)
T 2v5t_A 123 SGSPEPAISWFRNGKLIEEN 142 (189)
T ss_dssp EEESCCEEEEEETTEECCCS
T ss_pred ccCCCCeEEEEECCEECcCC
Confidence 78899999999999998654
No 271
>3iu4_H CHP3 FAB heavy chain; antibody, ganglioside, idiotype, immune system; 1.75A {Mus musculus} PDB: 1ibg_H* 3iy6_B
Probab=99.74 E-value=9.6e-18 Score=126.64 Aligned_cols=184 Identities=18% Similarity=0.288 Sum_probs=105.9
Q ss_pred ecceeeeecCCcEEEEEEecCCC--CCeeEEEECC--eecC-----------------CCeeEeceEEeeccceEEEEEE
Q psy14540 8 KFIQQTLQPGPPVSLKCIATGNP--TPHISWKLDG--YPLA-----------------GDRFVMGQYMSLHGDVISHVNI 66 (291)
Q Consensus 8 ~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~~--~~~~-----------------~~~~~~~~~~~~~~~~~~~l~i 66 (291)
.+..+.+.+|++++|.|.+.+.. ...+.|++.. .... .+++.. ........++|.|
T Consensus 6 ~~~~v~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~---~~~~~~~~~sL~I 82 (263)
T 3iu4_H 6 ESGPGLVAPSQSLSITCTVSGFSLSRYSVHWVRQPPGKGLEWLGMIWGGGSTDYNSALKSRLSI---SKDNSKSQVFLKM 82 (263)
T ss_dssp EECCSEECTTSCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTSCEEECGGGTTCEEE---EEEGGGTEEEEEE
T ss_pred CCCCEEEcCCCCEEEEEEeccccCCceEEEEEEECCCCCcEEEEEEeCCCcEeeCcccCCCEEE---EecCCCCEEEEEE
Confidence 34567899999999999997532 4679999732 1110 011111 1112334578999
Q ss_pred eecCCCCCeEEEEEEeCCCC--------ceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCC-c
Q psy14540 67 SSVRVEDSGIYQCTATNRVG--------SQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPP-L 137 (291)
Q Consensus 67 ~~~~~~d~G~y~C~~~~~~~--------~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~-~ 137 (291)
.+++.+|+|.|.|.+.+... .....+.|.|...+..+ ....... ....+.+|+.++|.|.+..++|. +
T Consensus 83 ~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~--P~v~~~~-~~~~~~~g~~~~L~C~~~~~~P~~~ 159 (263)
T 3iu4_H 83 NSLQTDDTAMYYCARSGVREGRAQAWFAYWGQGTLVTVSAASTKG--PSVFPLA-PSSKGSTSGTAALGCLVKDYFPEPV 159 (263)
T ss_dssp CSCCGGGCEEEEEEEEECC---CEEEEEEECCCEEEEECSSCCBC--CEEEEEC-CCCCC----EEEEEEEEEEEBSSCC
T ss_pred CCCCHHHCEEEEEEEEeCCCCccccccceeCCceEEEEecccCCC--CEEEEcc-CccccccCCcEEEEEEEEeEeCCce
Confidence 99999999999999975431 12233466665332111 1111111 11234578999999999666663 7
Q ss_pred eeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCee
Q psy14540 138 TISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGN 217 (291)
Q Consensus 138 ~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~ 217 (291)
.+.| ++..+.... . .........|.|.. .+.|.|.....+| |.
T Consensus 160 ~v~W--~~~~~~~~~--~------------~~~~~~~~~g~~~~--------------------~s~L~i~~~~~~~-~~ 202 (263)
T 3iu4_H 160 TVSW--NSGALTSGV--H------------TFPAVLQSSGLYSL--------------------SSVVTVPSSSLGT-QT 202 (263)
T ss_dssp EEEE--GGGTBCTTE--E------------ECCCEECTTSCEEE--------------------EEEEEEETTHHHH-CC
T ss_pred EEEE--CCcccCCce--e------------ecCceECCCCCEEE--------------------EEEEEECHhHcCC-CE
Confidence 8999 554432210 0 00011223355543 3467788887778 99
Q ss_pred EEEEeeeCCccCCceeE
Q psy14540 218 YTCVASNTVASDNHSSN 234 (291)
Q Consensus 218 y~C~~~~~~~~~~~~~~ 234 (291)
|+|.|.|..+.......
T Consensus 203 ytC~v~h~~~~~~~~~~ 219 (263)
T 3iu4_H 203 YICNVNHKPSNTKVDKK 219 (263)
T ss_dssp CEEEEEEGGGTEEEEEE
T ss_pred EEEEEEECCCCcceeEE
Confidence 99999998765433333
No 272
>2aty_A Complement receptor chimeric conjugate CR2-IG; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}
Probab=99.74 E-value=2.4e-17 Score=130.99 Aligned_cols=140 Identities=16% Similarity=0.249 Sum_probs=84.6
Q ss_pred eeecceee-eecCCcEEEEEEecCC---CC-CeeEEEECCeecCCCee-EeceEEeeccceEEEEEEeecCCCCCeEEEE
Q psy14540 6 IYKFIQQT-LQPGPPVSLKCIATGN---PT-PHISWKLDGYPLAGDRF-VMGQYMSLHGDVISHVNISSVRVEDSGIYQC 79 (291)
Q Consensus 6 ~~~~~~~~-v~~g~~v~l~C~~~~~---~~-~~v~W~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C 79 (291)
+..|.... +..|++++|.|.+.+. |. ..|.|++++..+..... .............+.|.|.+++.+|.|.|+|
T Consensus 171 ~~~p~~~~~~~~g~~v~L~C~~~g~~P~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~g~Y~C 250 (376)
T 2aty_A 171 IFPPKPKDVLTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTQPREEQFNSTFRSVSELPIMHQDWLNGKEFKC 250 (376)
T ss_pred EeCcCHHHceeeCCeeEEEEEEeccccCCCccEEEEEECCccccCcccCCCCcccCCcEEEEEEEEechHhccCCCEEEE
Confidence 33444344 7899999999999875 32 36999998865531110 0000001111234679999999999999999
Q ss_pred EEeCCCCceeeeeeEEEE-cCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCC-CceeEEeECCEecc
Q psy14540 80 TATNRVGSQTHSADMRVY-DAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDP-PLTISWLKNGLPIL 149 (291)
Q Consensus 80 ~~~~~~~~~~~~~~l~v~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p-~~~~~W~~~~~~~~ 149 (291)
.+.+..+.......+.+. .....| ..... +.......|+.++|.|.+.+.+| .+.|+|+++|..+.
T Consensus 251 ~~~~~~~~~~~~~~v~~~~~~~~~P---~v~v~-~~~~~~~~g~~~~L~C~~~g~~P~~i~v~W~k~g~~~~ 318 (376)
T 2aty_A 251 RVNSAAFPAPIEKTISKTKGRPKAP---QLYTI-PPPKEQMAKDKVSLTCMITDFFPEDITVEWQWNGQPAE 318 (376)
T ss_pred EEecCCCCCceEEEEcCCCCCCcCC---eEEee-CCCHHHhcCCceEEEEEEEEeECCCcEEEEEECCEECC
Confidence 998776543222222211 111111 11111 12222345889999999954455 56999999998874
No 273
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Probab=99.74 E-value=5.2e-17 Score=125.70 Aligned_cols=156 Identities=21% Similarity=0.332 Sum_probs=110.3
Q ss_pred ceeeeecCCcEEEEEEecCCCCCeeEEEECCeecC-CCeeEeceEEeeccceEEEEEEee-cCCCCCeEEEEEEeCCCCc
Q psy14540 10 IQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLA-GDRFVMGQYMSLHGDVISHVNISS-VRVEDSGIYQCTATNRVGS 87 (291)
Q Consensus 10 ~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~-~~~~d~G~y~C~~~~~~~~ 87 (291)
....+.+|+.+.|.|.+.+.|.+.+.|++++..+. ..++.. ........|.|.+ ++..|+|.|+|.+.|..|.
T Consensus 112 ~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~-----~~~~~~~~l~i~~~~~~~d~G~Y~C~a~N~~G~ 186 (305)
T 2nzi_A 112 GAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQV-----IVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGI 186 (305)
T ss_dssp CCEEEETTCCEEEEEEEEEESCCEEEEEESSSBCCSSSSCEE-----EECSSEEEEEETTCCCSTTCEEEEEEEEETTEE
T ss_pred ccEEecCCCEEEEEEEECCCCCCEEEEEECCEECCCCCcEEE-----EEcCCceEEEEecCCccCccEEEEEEEEeCCCc
Confidence 45678899999999999998899999999998776 333222 1122346789999 9999999999999999999
Q ss_pred eeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEee-------------CCCCCceeEEeECCEeccCCCce
Q psy14540 88 QTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVT-------------KGDPPLTISWLKNGLPILSDAEI 154 (291)
Q Consensus 88 ~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~-------------~~~p~~~~~W~~~~~~~~~~~~~ 154 (291)
....+.+.|...|..|..... ....+..+.|.|... ...+.+...|.+.+...
T Consensus 187 ~~~~~~l~v~~~P~~p~~~~~--------~~~~~~~v~l~w~~p~~~g~~~i~~y~v~~~~~~~~~w~~~~~~~------ 252 (305)
T 2nzi_A 187 DQKTVELDVADVPDPPRGVKV--------SDVSRDSVNLTWTEPASDGGSKITNYIVEKCATTAERWLRVGQAR------ 252 (305)
T ss_dssp EEEEEEEEEEBCCCCCEEEEE--------ESCCSSCEEEEEECCSCCSBSCEEEEEEEEEETTSCCEEEEEEES------
T ss_pred eeeEEEEEEecCCCCCCCcee--------eeccCCEEEEEEcCCccCCCCceeEEEEEEecCCCCccEECcccc------
Confidence 888999999887755532211 112345556666531 12222333444332211
Q ss_pred EEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCC
Q psy14540 155 TIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNH 192 (291)
Q Consensus 155 ~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~ 192 (291)
...+.|..+...+.|.|+|.|.|..|....
T Consensus 253 --------~~~~~i~~l~~~~~y~~~~~A~N~~G~~~~ 282 (305)
T 2nzi_A 253 --------ETRYTVINLFGKTSYQFRVIAENKFGLSKP 282 (305)
T ss_dssp --------SSEEEECSCCSSCEEEEEEEEEETTEECCC
T ss_pred --------CceEEecCCCCCCeEEEEEEEEeCCcccCC
Confidence 346889999999999999999999886543
No 274
>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2
Probab=99.74 E-value=7.6e-17 Score=117.35 Aligned_cols=135 Identities=23% Similarity=0.283 Sum_probs=84.1
Q ss_pred cceeecceeeeecCCcEEEEEEecCCCCCeeEEEECC--eecCC------CeeEeceEEee---ccceEEEEEEeecCCC
Q psy14540 4 QLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDG--YPLAG------DRFVMGQYMSL---HGDVISHVNISSVRVE 72 (291)
Q Consensus 4 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~--~~~~~------~~~~~~~~~~~---~~~~~~~l~i~~~~~~ 72 (291)
.+...|..+.+.+|++++|.|.+.+.. ..+.|+|.. ..+.. ......+.... .....++|.|.+++.+
T Consensus 3 ~v~q~p~~v~v~~G~~v~L~C~~~~~~-~~v~W~r~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~~L~I~~v~~~ 81 (207)
T 1ypz_E 3 QVEQSPSALSLHEGTDSALRCNFTTTM-RSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSKERRYSTLHIRDAQLE 81 (207)
T ss_dssp SEEESCSEEEEETTCCEEEEEEESSCC-SEEEEEEECTTSCCEEEEEESSEEEEETTEEEEECTTTCSEEEEEECSCCGG
T ss_pred ccEECCCeEEEccCCcEEEEEEEeCCC-eEEEEEEeCCCCCeEEEEEEccCCccCCCEEEEeccCCCCEEEEEECCCCHH
Confidence 356667888999999999999998643 479999843 21110 00011111111 1245578999999999
Q ss_pred CCeEEEEEEeCCCC---------c--eeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCC-ceeE
Q psy14540 73 DSGIYQCTATNRVG---------S--QTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPP-LTIS 140 (291)
Q Consensus 73 d~G~y~C~~~~~~~---------~--~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~-~~~~ 140 (291)
|+|.|.|.+.+..+ . ....+.|.|......+. .+ .+.+..+ .++|.|.+...+|. +.+.
T Consensus 82 D~G~Y~C~~~~~~~~~p~~~~~~~~~~~~~t~L~V~~~~~~~~-------~P-~v~~~~~-~~~l~C~~~g~~P~~~~v~ 152 (207)
T 1ypz_E 82 DSGTYFCAADTWHISEGYELGTDKLVFGQGTQVTVEPKSQPPA-------KP-SVFIMKN-GTNVACLVKDFYPKEVTIS 152 (207)
T ss_dssp GCEEEEEEEECBCCCTTCCCCCCCCEECCCEEEEEECCCCCCC-------CC-EEEEEEE-TTEEEEEEEEESSSCCEEE
T ss_pred HCEEEEEEEecCCcccccccccceeeecCccEEEEccCCCCCC-------CC-eEEEeCC-CCeEEEEEeeEeCCCeEEE
Confidence 99999999986531 1 12345777775321110 11 1112122 37999999655665 7999
Q ss_pred EeECCEecc
Q psy14540 141 WLKNGLPIL 149 (291)
Q Consensus 141 W~~~~~~~~ 149 (291)
|+++ ..+.
T Consensus 153 W~~~-~~l~ 160 (207)
T 1ypz_E 153 LRSS-KKIV 160 (207)
T ss_dssp EECS-SEEE
T ss_pred EecC-Cccc
Confidence 9998 6554
No 275
>3nl4_L Antigen binding fragment, immunoglobulin IGG - LI; FAB, rabbit, conformation-specific, amyloid, immune system; 1.54A {Oryctolagus cuniculus} PDB: 4hbc_L
Probab=99.73 E-value=3.1e-17 Score=120.17 Aligned_cols=144 Identities=15% Similarity=0.236 Sum_probs=93.0
Q ss_pred CcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCC
Q psy14540 113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNH 192 (291)
Q Consensus 113 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~ 192 (291)
+..+.+.+|+.++|.|.+ .+.|.+.+.|+++.... ....+..... . ......+
T Consensus 8 p~~~~v~~G~~v~L~C~~-~~~~~~~v~W~k~~~~~---~~~~~~~~~~-~-------~~~~~~~--------------- 60 (213)
T 3nl4_L 8 PASVSEPVGGTVTIKCQA-SQSISSYLAWYQQKPGQ---RPRLLIYETS-T-------LASGVPS--------------- 60 (213)
T ss_dssp CSEEEEETTCCEEEEEEE-SSCCTTCEEEEEECTTS---CCEEEEETTT-E-------ECTTCCT---------------
T ss_pred CCeEEEcCCCCEEEEEEe-cCCCCceEEEEEECCCC---CcEEEEEeCC-c-------cCCCCCc---------------
Confidence 345788899999999999 67789999999853110 0000000000 0 0000011
Q ss_pred ceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCc---cCCceeEEEEe---cCCCCCCCCccc-ccCCceEEEEEEeec
Q psy14540 193 SSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVA---SDNHSSNLRVN---VPPHIGPFTFGE-LMEGVRTQVACVVQS 265 (291)
Q Consensus 193 ~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~---~~~~~~~l~v~---~~p~~~~~~~~~-~~~g~~v~l~C~~~~ 265 (291)
.+.+........|.|.++..+|+|.|.|.+.+..+ .......|.|. .+|.+....... +.+|+.++|.|.+.+
T Consensus 61 r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~v~l~C~~~g 140 (213)
T 3nl4_L 61 RFKGSGSGTDFTLTISDLECADAATYYCQSTYENPTYVSFGGGTEVGVKGDPVAPTVLIFPPSADLVATGTVTIVCVANK 140 (213)
T ss_dssp TEEEEEETTEEEEEECSCCGGGCEEEEEEECCSSTTTCEECCCEEEEEECCCBCCEEEEECCCHHHHTTSEEEEEEEEEE
T ss_pred cEEEecCCCEEEEEECCCChHHCEEEEEecCCCCceeEEeCCCeEEEEeCCCcCCeEEEeCCchhhccCCcEeEEEEEec
Confidence 12222223456899999999999999999998765 33445566663 345554433333 667999999999944
Q ss_pred CCCCceEEEEECCEEccC
Q psy14540 266 GDLPLSLQWYKNGLAISQ 283 (291)
Q Consensus 266 ~~p~~~v~W~~~~~~l~~ 283 (291)
+.|.+.|.|++||..+..
T Consensus 141 ~~P~~~v~W~k~g~~~~~ 158 (213)
T 3nl4_L 141 YFPDVTVTWEVDGTTQTT 158 (213)
T ss_dssp EBSCCEEEEEETTEECCS
T ss_pred ccCCcEEEEEeCCccCCC
Confidence 488999999999999865
No 276
>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2
Probab=99.73 E-value=1.6e-18 Score=136.53 Aligned_cols=141 Identities=18% Similarity=0.331 Sum_probs=83.3
Q ss_pred CCcceeecceeeeecCCcEEEEEEecCC-CC-CeeEEEECCeecCCCeeEeceEEeecc--ceEEEEEEeecCCCCCeEE
Q psy14540 2 HPQLIYKFIQQTLQPGPPVSLKCIATGN-PT-PHISWKLDGYPLAGDRFVMGQYMSLHG--DVISHVNISSVRVEDSGIY 77 (291)
Q Consensus 2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~-~~-~~v~W~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~y 77 (291)
+|.+...+....+.+|+.++|.|.+.+. |. +.+.|++++..+..... .......+ ...+.|.|.+++.+| |.|
T Consensus 120 ~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~--~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y 196 (344)
T 1za6_B 120 GPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTF--PAVLQSSGLYSLSSVVTVPSSSLGT-QTY 196 (344)
T ss_dssp CCEEEEECCSCTTTSSSEEEEEEEEEEEBSSCCCEEETTTTBCTTEEEC--CCEECTTSCEEEEEEEEEETTHHHH-BCE
T ss_pred CCeEEEccccccccCCCcEEEEEEEeeEECCCeEEEEecCCccCceeEC--CCeECCCCCEEEEEEEEEcHHHcCC-CcE
Confidence 3555544434456799999999999874 54 79999999876431100 00000011 123578999988888 999
Q ss_pred EEEEeCCCCceeeeeeEE--E-------------------EcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCC-
Q psy14540 78 QCTATNRVGSQTHSADMR--V-------------------YDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDP- 135 (291)
Q Consensus 78 ~C~~~~~~~~~~~~~~l~--v-------------------~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p- 135 (291)
+|.+.+..+.......+. + ......| ......+... ..+|..++|.|.+.+.+|
T Consensus 197 ~C~a~n~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~P---~v~~~~~~~~-~~~~~~~~L~C~~~g~~P~ 272 (344)
T 1za6_B 197 ICNVNHKPSNTKVDKKVEPKSCDKTHTCPPCGGGSSGGGSGGQPREP---QVYTLPPSRD-ELTKNQVSLTCLVKGFYPS 272 (344)
T ss_dssp EEEEEEGGGTEEEEEEECCCCC--------------------CCBCC---EEEEECCCGG-GGGSSSEEEEEEEEEEBSS
T ss_pred EEEEEeCCCCccceEeecccccccccccCCCCCCccccccCCCCcCC---EEEEeCCChH-hccCCcEEEEEEEeeEECC
Confidence 999998766533222221 1 0011111 1111111112 224667999999953355
Q ss_pred CceeEEeECCEecc
Q psy14540 136 PLTISWLKNGLPIL 149 (291)
Q Consensus 136 ~~~~~W~~~~~~~~ 149 (291)
.+.+.|+++|..+.
T Consensus 273 ~~~v~W~k~g~~~~ 286 (344)
T 1za6_B 273 DIAVEWESNGQPEN 286 (344)
T ss_dssp CCEEEEESSSSCCC
T ss_pred CeEEEEEECCeECC
Confidence 46899999998774
No 277
>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*
Probab=99.73 E-value=5.6e-17 Score=118.81 Aligned_cols=142 Identities=14% Similarity=0.301 Sum_probs=94.3
Q ss_pred ceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCce
Q psy14540 115 SIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSS 194 (291)
Q Consensus 115 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~ 194 (291)
.+.+.+|+.++|.|.+ .+.|.+.+.|++....- ........... ......+.|
T Consensus 9 ~~~v~~G~~v~L~C~~-~~~~~~~v~W~k~~~~~--~~~~~~~~~~~---------~~~~~~~r~--------------- 61 (213)
T 3mj8_L 9 LVSVALGQKATITCSG-DKLSDVYVHWYQQKAGQ--APVLVIYEDNR---------RPSGIPDHF--------------- 61 (213)
T ss_dssp EEEEETTSCEEEEEEC-SSTTTSCEEEEEECTTS--CCEEEEBTTTB---------CCTTSCTTE---------------
T ss_pred cEEEeCCCCEEEEEEc-CCCCCceEEEEEECCCC--CcEEEEEECCc---------cCCCccCcE---------------
Confidence 5788899999999999 58889999999832100 00000000000 000011112
Q ss_pred EEEEeccceEEEEeeeecCCCeeEEEEeeeCCc---cCCceeEEEEe----cCCCCCCCCccc-ccCCceEEEEEEeecC
Q psy14540 195 NLRVNEYTSSLSIATLSTGHSGNYTCVASNTVA---SDNHSSNLRVN----VPPHIGPFTFGE-LMEGVRTQVACVVQSG 266 (291)
Q Consensus 195 ~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~---~~~~~~~l~v~----~~p~~~~~~~~~-~~~g~~v~l~C~~~~~ 266 (291)
.+........|.|.++..+|+|.|.|.+.+..+ .......|.|. .+|.+...+... +.+|+.++|.|.+.+.
T Consensus 62 ~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~l~C~~~g~ 141 (213)
T 3mj8_L 62 SGSNSGNMATLTISKAQAGDEADYYCQSWDGTNSAWVFGSGTKVTVLGQPNAAPSVTLFPPSSEELKTNQATLVCMINGF 141 (213)
T ss_dssp EEEEETTEEEEEESSCCGGGCEEEEEEEEETTTTEEEEBCCEEEEEECSCCBCCEEEEECCCHHHHTTTEEEEEEEEEEE
T ss_pred EEEecCCEEEEEECCCChhhCEEEEEEeccCCcceeEEcCceEEEEeCCCCCCCeEEccCCCcccccCCcEEEEEEeece
Confidence 222233466899999999999999999998876 45666778887 566665544333 5589999999999444
Q ss_pred CCC-ceEEEEECCEEccC
Q psy14540 267 DLP-LSLQWYKNGLAISQ 283 (291)
Q Consensus 267 ~p~-~~v~W~~~~~~l~~ 283 (291)
.|+ +.|.|++||.++..
T Consensus 142 ~p~~~~v~W~k~g~~l~~ 159 (213)
T 3mj8_L 142 YPADVAVTWEADGTPITQ 159 (213)
T ss_dssp BSSCCEEEEEETTEEECT
T ss_pred eCCCeEEEEEcCCcccCC
Confidence 454 49999999999865
No 278
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*
Probab=99.73 E-value=2.6e-17 Score=120.94 Aligned_cols=135 Identities=21% Similarity=0.403 Sum_probs=93.3
Q ss_pred cCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCC
Q psy14540 111 SNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASD 190 (291)
Q Consensus 111 ~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~ 190 (291)
..+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+....... ..+.+ .+...
T Consensus 14 ~~p~~~~v~~G~~v~L~C~~-~g~p~~~v~W~~~g~~~~~~~~~~--------~~~~~-----~~~~~------------ 67 (217)
T 2vr9_A 14 EHPTDLVVKKNEPATLNCKV-EGKPEPTIEWFKDGEPVSTNEKKS--------HRVQF-----KDGAL------------ 67 (217)
T ss_dssp ECCCCEEECTTSCEEECCEE-ECSSCCEEEEEETTEECCCSSSSS--------SEEEC-----TTSCE------------
T ss_pred cCCCceEEeCCCcEEEEEEc-CCCCCCeEEEEECCcCccCCCccc--------eeEEe-----cCCce------------
Confidence 34456788999999999999 688889999999998876542110 00000 00000
Q ss_pred CCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccC-CceeEEEEec-CCCCCCCCccc-ccCCceEEEEEEeecCC
Q psy14540 191 NHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASD-NHSSNLRVNV-PPHIGPFTFGE-LMEGVRTQVACVVQSGD 267 (291)
Q Consensus 191 ~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~-~~~~~l~v~~-~p~~~~~~~~~-~~~g~~v~l~C~~~~~~ 267 (291)
...+.|.++..+|+|.|+|.+.|..+.. +....|.|.. +|.+...+... +.+|+.++|.|.+..+.
T Consensus 68 -----------~~~l~i~~v~~~d~G~Y~C~~~n~~g~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~g~ 136 (217)
T 2vr9_A 68 -----------FFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALLECGPPKGI 136 (217)
T ss_dssp -----------EESSCCBSSSCBCCEEEEEEEEETTEEEECCCEEEEECEECCSCSBCCCCEEECTTSCEEECCBCCCEE
T ss_pred -----------EEEEEeccCCcccCceEEEEEecCCCccccccceEEEEEeCCCcEECCCccEEcCCCeEEEEEECCCCC
Confidence 0123456677788888888888877543 4455666654 45554444444 89999999999986788
Q ss_pred CCceEEEEECCEEcc
Q psy14540 268 LPLSLQWYKNGLAIS 282 (291)
Q Consensus 268 p~~~v~W~~~~~~l~ 282 (291)
|.+.+.|+++|..+.
T Consensus 137 p~~~v~W~~~g~~~~ 151 (217)
T 2vr9_A 137 PEPTLIWIKDGVPLD 151 (217)
T ss_dssp SCCEEEEEETTEEEC
T ss_pred CCCeEEEEECCcCCC
Confidence 999999999999887
No 279
>3sob_H Antibody heavy chain, low-density lipoprotein receptor-related protein; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_B 3uls_H 3ulu_D* 3ulv_D*
Probab=99.73 E-value=9.7e-17 Score=120.91 Aligned_cols=185 Identities=23% Similarity=0.360 Sum_probs=103.8
Q ss_pred ecceeeeecCCcEEEEEEecCC--CCCeeEEEECC--eecC------------------CCeeEeceEEeeccceEEEEE
Q psy14540 8 KFIQQTLQPGPPVSLKCIATGN--PTPHISWKLDG--YPLA------------------GDRFVMGQYMSLHGDVISHVN 65 (291)
Q Consensus 8 ~~~~~~v~~g~~v~l~C~~~~~--~~~~v~W~~~~--~~~~------------------~~~~~~~~~~~~~~~~~~~l~ 65 (291)
.+....+.+|++++|.|.+.+. ....+.|++.. .... .+++.. ........++|+
T Consensus 29 ~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~---~~~~~~~~~sL~ 105 (256)
T 3sob_H 29 ESGGGLVQPGGSLRLSCAASGFTFTNSYIHWVRQAPGKGLEWVGWITPYGGYTNYADSVKGRFTI---SADTSKNTAYLQ 105 (256)
T ss_dssp EECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCCEEEEEEETTTTEEEECTTTTTTEEE---EEEGGGTEEEEE
T ss_pred ecCcEEEcCCCCEEEEEEeeccccCCCEEEEEEECCCCCcEEEEEEecCCCceecCCCCCCcEEE---EEeCCCCEEEEE
Confidence 3455779999999999999752 24679999732 1110 011111 111233557899
Q ss_pred EeecCCCCCeEEEEEEeCCCC-----------ceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCC
Q psy14540 66 ISSVRVEDSGIYQCTATNRVG-----------SQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGD 134 (291)
Q Consensus 66 i~~~~~~d~G~y~C~~~~~~~-----------~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~ 134 (291)
|.+++.+|+|.|.|.+.+..+ .....+.+.|...+..+ +..... .....+.+|+.++|.|.+...+
T Consensus 106 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~--P~i~~~-~~~~~~~~g~~v~L~C~~~~~~ 182 (256)
T 3sob_H 106 MNSLRAEDTAVYYCARGSGHVNAVKNYGYVMDYWGQGTLVTVSSASTKG--PSVFPL-APSSKSTSGGTAALGCLVKDYF 182 (256)
T ss_dssp ECSCCGGGCEEEEEEEESSCTTCSSCCTTSEEEECCCEEEEECSSCCBC--CEEEEE-CCC-----TTEEEEEEEEEEEB
T ss_pred ECCCCcccCEEEEEEEecCCCccccccccceeEECCCEEEEEecCCCCC--CEEEEE-CCCcccccCCcEEEEEEEEEEE
Confidence 999999999999999985431 12334466665432111 111111 1122456899999999996556
Q ss_pred C-CceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecC
Q psy14540 135 P-PLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTG 213 (291)
Q Consensus 135 p-~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~ 213 (291)
| .+.+.| ++..+...... .....+..|.|.- .+.|.|.....+
T Consensus 183 p~~~~v~W--~~~~~~~~~~~--------------~~~~~~~~g~~~~--------------------~s~L~i~~~~~~ 226 (256)
T 3sob_H 183 PEPVTVSW--NSGALTSGVHT--------------FPAVLQSSGLYSL--------------------SSVVTVPSSSLG 226 (256)
T ss_dssp SSCCEEEE--GGGTBCTTEEE--------------CCCEECTTSCEEE--------------------EEEEEEEGGGTT
T ss_pred CCCeEEEE--CCcccCCCeEe--------------CCceeCCCCCEEE--------------------EEEEEECHHHcC
Confidence 6 567999 55444221100 0000122244432 245677777777
Q ss_pred CCeeEEEEeeeCCccCCceeEE
Q psy14540 214 HSGNYTCVASNTVASDNHSSNL 235 (291)
Q Consensus 214 ~~g~y~C~~~~~~~~~~~~~~l 235 (291)
| |.|+|.+.|..+.......+
T Consensus 227 d-~~ytC~v~~~~~~~~~~~~~ 247 (256)
T 3sob_H 227 T-QTYICNVNHKPSNTKVDKKV 247 (256)
T ss_dssp T-CCCEEEEEEGGGTEEEEEEC
T ss_pred C-ceEEEEEEeCCCCcceEEEe
Confidence 7 88888887776544333333
No 280
>3mlr_H Human monoclonal anti-HIV-1 GP120 V3 antibody 255 heavy chain; human monoclonal antibody, FAB, third variable antibody-antigen interaction; 1.80A {Homo sapiens} PDB: 3mls_H 3mlt_H 3mlu_H 3mlv_H
Probab=99.73 E-value=5e-17 Score=120.12 Aligned_cols=132 Identities=22% Similarity=0.305 Sum_probs=80.1
Q ss_pred ecceeeeecCCcEEEEEEecCC--CCCeeEEEECC--eecC------C------------CeeEeceEEeeccceEEEEE
Q psy14540 8 KFIQQTLQPGPPVSLKCIATGN--PTPHISWKLDG--YPLA------G------------DRFVMGQYMSLHGDVISHVN 65 (291)
Q Consensus 8 ~~~~~~v~~g~~v~l~C~~~~~--~~~~v~W~~~~--~~~~------~------------~~~~~~~~~~~~~~~~~~l~ 65 (291)
.|..+.+.+|++++|.|.+.+. +...+.|++.. .... . +++.. ........++|+
T Consensus 6 q~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~---~~~~~~~~~sL~ 82 (226)
T 3mlr_H 6 ESGGEVKQPGQSLKISCKSSGYNFLDSWIGWVRQIPGKGLEWIGIIYPDDSDAHYSPSFEGQVTM---SVDKSISTAYLQ 82 (226)
T ss_dssp ECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTBTTBEE---EEEGGGTEEEEE
T ss_pred cCCCEEEecCCCEEEEEEecCccccCCEEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEE---EecCCCCEEEEE
Confidence 4456889999999999999652 34679999832 1110 0 11111 111223457899
Q ss_pred EeecCCCCCeEEEEEEeCCCC---------ceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCC-
Q psy14540 66 ISSVRVEDSGIYQCTATNRVG---------SQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDP- 135 (291)
Q Consensus 66 i~~~~~~d~G~y~C~~~~~~~---------~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p- 135 (291)
|.+++.+|+|.|.|.+.+..+ .....+.|.|...+..++ ... .......+.+|+.++|.|.+...+|
T Consensus 83 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~P-~i~--~~~~~~~~~~g~~~~l~C~~~~~~p~ 159 (226)
T 3mlr_H 83 WTTLQASDTGKYFCTRLYLFEGAQSSNAFDLWGQGTMILVSSGTTKGP-SVF--PLAPSSKSTSGGTAALGCLVKDYFPE 159 (226)
T ss_dssp ESSCCGGGCEEEEEEEEEEEESSSEEEEEEEECCCEEEEECCCCCBCC-EEE--EEEEEECSTTSSEEEEEEEEEEEBSS
T ss_pred ECCCCcccCEEEEEeEccCCCcccccchhhhhCCccEEeeccCCCCCC-cEE--EecCcccccCCCCEEEEEEEEEEECC
Confidence 999999999999999875320 112334566654322111 111 1111223458999999999966566
Q ss_pred CceeEEeECCEe
Q psy14540 136 PLTISWLKNGLP 147 (291)
Q Consensus 136 ~~~~~W~~~~~~ 147 (291)
.+.+.| ++..
T Consensus 160 ~~~v~W--~~~~ 169 (226)
T 3mlr_H 160 PVTVSW--NSGA 169 (226)
T ss_dssp CCEEEE--GGGT
T ss_pred CeEEEE--CCcc
Confidence 568999 4443
No 281
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B
Probab=99.73 E-value=2.9e-17 Score=119.31 Aligned_cols=130 Identities=15% Similarity=0.165 Sum_probs=87.6
Q ss_pred CcceeecCCCceEEEEEeeCCCCC-----ceeEEeE-CCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEec
Q psy14540 113 SRSIKVHSGDRAGVQCLVTKGDPP-----LTISWLK-NGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNT 186 (291)
Q Consensus 113 ~~~~~~~~g~~~~l~C~~~~~~p~-----~~~~W~~-~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~ 186 (291)
+..+.+.+|+.+.|.|.+ .+.|. +.+.|++ ++.......+..+.....
T Consensus 9 ~~~v~v~~G~~v~L~C~~-~~~p~~~~~~~~v~W~k~~~~~~~~~~r~~~~~~~~------------------------- 62 (202)
T 3bp6_B 9 KEVYTVDVGSSVSLECDF-DRRECTELEGIRASLQKVENDTSLQSERATLLEEQL------------------------- 62 (202)
T ss_dssp CSEEEEETTSCEEEEEEE-CTTC---CTTEEEEEEECC--CCCBCSSCEECGGGG-------------------------
T ss_pred CcCEEEeCCCcEEEEEEe-cCCCCCCccceEEEEEcCCCcccccCCceEEeeccc-------------------------
Confidence 345778899999999999 67765 8999999 443332222222211100
Q ss_pred CCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCCCCCCCCcccccCCceEEEEEEeecC
Q psy14540 187 VASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGPFTFGELMEGVRTQVACVVQSG 266 (291)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~g~~v~l~C~~~~~ 266 (291)
......|.|.++..+|+|.|+|.+.+..+.....+.|.|..++.........+.+|+.+.|.|.+ .|
T Consensus 63 ------------~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~~~~p~~~~~~~~~g~~v~l~C~~-~g 129 (202)
T 3bp6_B 63 ------------PLGKALFHIPSVQVRDSGQYRCLVICGAAWDYKYLTVKVKASYMRIDTRILEVPGTGEVQLTCQA-RG 129 (202)
T ss_dssp ------------GGTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEBCCCCEEEEEEECTTTCCEEEEEEE-EE
T ss_pred ------------cCCeeEEEECCCCHHHCcEEEEEEEeCCCcceEEEEEEecCCCCcccEEEEecCCCCeEEEEEEc-cc
Confidence 00134677777788888888888888776667777788876543211111126789999999999 88
Q ss_pred CCCceEEEEECCEEc
Q psy14540 267 DLPLSLQWYKNGLAI 281 (291)
Q Consensus 267 ~p~~~v~W~~~~~~l 281 (291)
.|.|.+.|++++..+
T Consensus 130 ~P~p~v~W~~~~~~~ 144 (202)
T 3bp6_B 130 YPLAEVSWQNVSVPA 144 (202)
T ss_dssp BSCCEEEETTCCSCC
T ss_pred cCCceEEEEeCCCCc
Confidence 999999999998765
No 282
>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*
Probab=99.72 E-value=9.9e-17 Score=115.21 Aligned_cols=122 Identities=19% Similarity=0.265 Sum_probs=90.5
Q ss_pred eeecCCCceEEEEEeeCCCCCc--eeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCc
Q psy14540 116 IKVHSGDRAGVQCLVTKGDPPL--TISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHS 193 (291)
Q Consensus 116 ~~~~~g~~~~l~C~~~~~~p~~--~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~ 193 (291)
+.+..|++++|.|.+ +.|.+ .|.|++.+..+ .+..
T Consensus 17 v~v~~G~sv~L~C~a--~~p~P~~~i~W~~~~~~l---~~~~-------------------------------------- 53 (210)
T 1gsm_A 17 VAVALGASRQLTCRL--ACADRGASVQWRGLDTSL---GAVQ-------------------------------------- 53 (210)
T ss_dssp EEEETTCCEEEEEEE--CCSSTTCEEEEESSTTTT---CCEE--------------------------------------
T ss_pred eEEeCCCCEEEEEEC--CCCCCCcceEEeeccccc---CcEE--------------------------------------
Confidence 678899999999998 56666 99999854332 1110
Q ss_pred eEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCCCCCCCCcccccCCceEEEEEEeecCCCC----
Q psy14540 194 SNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGPFTFGELMEGVRTQVACVVQSGDLP---- 269 (291)
Q Consensus 194 ~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~g~~v~l~C~~~~~~p~---- 269 (291)
.......|.|.+++.+|+|.|.|.+.+..+.....+.|.|..+|.........+..|+.+ |+|.+.+.+|.
T Consensus 54 ----~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~~~~~ltV~~~P~~~~i~~~~~~~g~~~-l~C~a~g~~P~~~~~ 128 (210)
T 1gsm_A 54 ----SDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLLVYAFPNQLTVSPAALVPGDPE-VACTAHKVTPVDPNA 128 (210)
T ss_dssp ----EESSEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEBCCSEEEEESSSBCTTCCE-EEEEEEEEBCCCTTT
T ss_pred ----ecCCccEEEECccCcccCceEEEEEEeCCCceEEEEEEEEEecCCCcEEccceEEeCCce-EEEEeCCCCCCCCCC
Confidence 011245688888888889999999998887777889999999886544333356678888 99999555674
Q ss_pred ceEEEEECCEEccCCe
Q psy14540 270 LSLQWYKNGLAISQPD 285 (291)
Q Consensus 270 ~~v~W~~~~~~l~~~~ 285 (291)
++|.|+|||++|...+
T Consensus 129 lti~Wlk~~~~L~~~~ 144 (210)
T 1gsm_A 129 LSFSLLVGGQELEGAQ 144 (210)
T ss_dssp EEEEEEETTEECTTCE
T ss_pred cEEEEEECCEEccccc
Confidence 5999999999996543
No 283
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}
Probab=99.71 E-value=1.5e-16 Score=104.49 Aligned_cols=97 Identities=27% Similarity=0.428 Sum_probs=81.2
Q ss_pred CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCC--CeeEeceEEeeccceEEEEEEeecCCCCCeEEEE
Q psy14540 2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAG--DRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQC 79 (291)
Q Consensus 2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C 79 (291)
+|.|+..|....+.+|+.++|.|.+.+.|.+.+.|++++..+.. .++.. ...+...++|.|.+++.+|+|.|+|
T Consensus 15 ~p~f~~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~----~~~~~~~~~L~I~~v~~~D~G~Y~C 90 (116)
T 2kkq_A 15 APMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISL----YQDNTGRVTLLIKDVNKKDAGWYTV 90 (116)
T ss_dssp CCCBSSCCCCEEEETTEEEEEEEEBCCBSCCEEEEEETTEECCCCBTTEEE----EECTTCEEEEEEEEECGGGCEEEEE
T ss_pred CCeEEeCCCcEEEeCCCcEEEEEEEeccCCCEEEEEECCEECcCCCCeEEE----EeCCCCeEEEEECCCCcccCEEEEE
Confidence 78999999999999999999999999988899999999988763 22222 1223345689999999999999999
Q ss_pred EEeCCCCceeeeeeEEEEcCCCC
Q psy14540 80 TATNRVGSQTHSADMRVYDAPGQ 102 (291)
Q Consensus 80 ~~~~~~~~~~~~~~l~v~~~~~~ 102 (291)
.+.|..|.....+.|.|...|..
T Consensus 91 ~a~N~~G~~~~~~~l~V~~~p~~ 113 (116)
T 2kkq_A 91 SAVNEAGVTTCNTRLDVTARPNQ 113 (116)
T ss_dssp EEEETTEEEEEEEEEEEECCSCC
T ss_pred EEEcCCCeEEEEEEEEEeCCCCC
Confidence 99999998888899999877643
No 284
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=99.71 E-value=3e-16 Score=102.84 Aligned_cols=101 Identities=18% Similarity=0.234 Sum_probs=76.4
Q ss_pred CcceeecceeeeecCCcEEEEEEecCC---CCCeeEEEECCeec-C---CCeeEeceEEe-eccceEEEEEEeecCCCCC
Q psy14540 3 PQLIYKFIQQTLQPGPPVSLKCIATGN---PTPHISWKLDGYPL-A---GDRFVMGQYMS-LHGDVISHVNISSVRVEDS 74 (291)
Q Consensus 3 p~~~~~~~~~~v~~g~~v~l~C~~~~~---~~~~v~W~~~~~~~-~---~~~~~~~~~~~-~~~~~~~~l~i~~~~~~d~ 74 (291)
|.|+..|.++.+.+|++++|.|.+.+. |.+.|.|||++... . ..++.+..... ......+.|+|.+++..|+
T Consensus 8 ~~F~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~Da 87 (126)
T 2dav_A 8 ILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFA 87 (126)
T ss_dssp CSCCSCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSC
T ss_pred cEEEEcCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCcCcccCCCCCceEEEccccccccccceEEEEEccCCcccC
Confidence 578899999999999999999999764 78999999974211 1 12222211111 1112357899999999999
Q ss_pred eEEEEEEeCCCCceeeeeeEEEEc-CCCCC
Q psy14540 75 GIYQCTATNRVGSQTHSADMRVYD-APGQP 103 (291)
Q Consensus 75 G~y~C~~~~~~~~~~~~~~l~v~~-~~~~~ 103 (291)
|.|+|++.+..+..+..+.|+|.. ++..|
T Consensus 88 G~Y~Cevsn~~g~~~~~~~L~V~~~~~~~p 117 (126)
T 2dav_A 88 GNYRCEVTYKDKFDSCSFDLEVHESTGTTP 117 (126)
T ss_dssp EEEEEEEECSSCEEEECCEEEEECCCCSCC
T ss_pred EEEEEEEEeCCCcEEEEEEEEEEecCCCCC
Confidence 999999999999999999999998 54333
No 285
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=1.6e-16 Score=103.48 Aligned_cols=99 Identities=24% Similarity=0.451 Sum_probs=82.4
Q ss_pred CCCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCC--CeeEeceEEeeccceEEEEEEeecCCCCCeEEE
Q psy14540 1 SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAG--DRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQ 78 (291)
Q Consensus 1 s~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~ 78 (291)
.+|.|...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+.. .++.. .......+.|.|.+++..|+|.|+
T Consensus 7 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~----~~~~~~~~~L~i~~v~~~D~G~Y~ 82 (110)
T 2dm2_A 7 GAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTI----QRDLDGTCSLHTTASTLDDDGNYT 82 (110)
T ss_dssp CCCCBSSCCCCEEEETTCCEEEEEEBCCSSCCEEEEECSSCBCCTTCSSEEE----EECTTCEEEEEESSCCTTTCSCCE
T ss_pred CCCEEEecCcCeEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCCCeEEE----EECCCcEEEEEECCCChhhCEEEE
Confidence 378999999999999999999999999989999999999988763 23322 122344578999999999999999
Q ss_pred EEEeCCCCceeeeeeEEEEcCCCCC
Q psy14540 79 CTATNRVGSQTHSADMRVYDAPGQP 103 (291)
Q Consensus 79 C~~~~~~~~~~~~~~l~v~~~~~~~ 103 (291)
|.+.|..|.....+.|.|...+..|
T Consensus 83 C~a~N~~g~~~~~~~l~V~~~~~~P 107 (110)
T 2dm2_A 83 IMAANPQGRISCTGRLMVQAVNSGP 107 (110)
T ss_dssp EEEECTTCCEEECCCEEEECCSCCS
T ss_pred EEEEECCCeEEEEEEEEEECCCCCC
Confidence 9999999999889999998876443
No 286
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A
Probab=99.71 E-value=4.1e-17 Score=119.40 Aligned_cols=140 Identities=20% Similarity=0.381 Sum_probs=94.0
Q ss_pred cCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCC
Q psy14540 111 SNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASD 190 (291)
Q Consensus 111 ~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~ 190 (291)
..+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+....... ......+ .+...+
T Consensus 14 ~~p~~~~v~~G~~v~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~------~~~~~~~-----~~~~~~----------- 70 (212)
T 2v9r_A 14 EHPSDLIVSKGEPATLNCKA-EGRPTPTIEWYKGGERVETDKDDP------RSHRMLL-----PSGSLF----------- 70 (212)
T ss_dssp ECCCCEEECTTCCEEECCEE-EEESCCEEEEEETTEECCCTTTCT------TCSEEEC-----TTSCEE-----------
T ss_pred cCCCceEEeCCCcEEEEEEc-CCCCCCEEEEEECCEEeecccccc------ccceEEe-----cCCcEE-----------
Confidence 34455788899999999999 678889999999998875432100 0000000 000000
Q ss_pred CCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccC-CceeEEEEec-CCCCCCCCccc-ccCCceEEEEEEeecCC
Q psy14540 191 NHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASD-NHSSNLRVNV-PPHIGPFTFGE-LMEGVRTQVACVVQSGD 267 (291)
Q Consensus 191 ~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~-~~~~~l~v~~-~p~~~~~~~~~-~~~g~~v~l~C~~~~~~ 267 (291)
...+.|.++...|+|.|+|.+.|..+.. +..+.|.|.. ++.+...+... +.+|+.++|.|.+..+.
T Consensus 71 -----------~~~l~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~~l~V~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~ 139 (212)
T 2v9r_A 71 -----------FLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVAVGEPAVMECQPPRGH 139 (212)
T ss_dssp -----------ESSCCCCSSCCCSCEEEEEEEEETTEEEECCCEEEEECEECSSCSBCCCCEEEETTSCEEEECBCCCEE
T ss_pred -----------EEEEEecCCCcccCeEEEEEEECCCCceeecceEEEEEeccccceeCCCceEecCCCcEEEEEecCCCC
Confidence 1123445667788888888888877543 5566777765 34444333333 89999999999975678
Q ss_pred CCceEEEEECCEEccCC
Q psy14540 268 LPLSLQWYKNGLAISQP 284 (291)
Q Consensus 268 p~~~v~W~~~~~~l~~~ 284 (291)
|.+.+.|+++|..+...
T Consensus 140 p~~~v~W~~~~~~l~~~ 156 (212)
T 2v9r_A 140 PEPTISWKKDGSPLDDK 156 (212)
T ss_dssp SCCEEEEEETTEEECTT
T ss_pred CCCEEEEEECCccCCCC
Confidence 88999999999998754
No 287
>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...
Probab=99.71 E-value=1.3e-16 Score=116.90 Aligned_cols=145 Identities=16% Similarity=0.209 Sum_probs=91.8
Q ss_pred CcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCC
Q psy14540 113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNH 192 (291)
Q Consensus 113 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~ 192 (291)
+..+.+.+|+.+.|.|.+ .+.|.+.+.|++++..... . +.+.... . ...+ ...
T Consensus 8 p~~~~v~~G~~v~L~C~~-~~~~~~~v~W~k~~~~~~~--~------------~~~~~~~-----~------~~~~-~~~ 60 (213)
T 3d9a_L 8 PATLSVTPGNSVSLSCRA-SQSIGNNLHWYQQKSHESP--R------------LLIKYAS-----Q------SISG-IPS 60 (213)
T ss_dssp CSEEEECTTCCEEEEEEE-SSCCTTCEEEEEECTTSCC--E------------EEEETTT-----E------ECTT-SCT
T ss_pred CccEEEeCCCcEEEEEEC-CCCCCCCEEEEEeCCCCCc--E------------EEEEEcc-----c------cccc-ccc
Confidence 345778899999999998 6888889999985321100 0 0000000 0 0000 001
Q ss_pred ceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCcc-CCceeEEEEec---CCCCCCCCccc-ccCCceEEEEEEeecCC
Q psy14540 193 SSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVAS-DNHSSNLRVNV---PPHIGPFTFGE-LMEGVRTQVACVVQSGD 267 (291)
Q Consensus 193 ~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~-~~~~~~l~v~~---~p~~~~~~~~~-~~~g~~v~l~C~~~~~~ 267 (291)
.+.+........|.|.++..+|+|.|+|.+.+..+. ......|.|.. +|.+....... ...|+.++|.|.+.++.
T Consensus 61 r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~~~l~C~~~g~~ 140 (213)
T 3d9a_L 61 RFSGSGSGTDFTLSINSVETEDFGMYFCQQSNSWPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFY 140 (213)
T ss_dssp TEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEB
T ss_pred cEEEEcCCCEEEEEECCCChhhCEEEEEeeecCCcceeCCCEEEEEecCCCCceeEeECCChhhcCCCcEEEEEEEeeec
Confidence 111222233557999999999999999999887643 23334566654 55555433332 55799999999994446
Q ss_pred CCc-eEEEEECCEEccCC
Q psy14540 268 LPL-SLQWYKNGLAISQP 284 (291)
Q Consensus 268 p~~-~v~W~~~~~~l~~~ 284 (291)
|++ .|.|+|||.++...
T Consensus 141 p~~~~v~W~k~g~~~~~~ 158 (213)
T 3d9a_L 141 PKDINVKWKIDGSERQNG 158 (213)
T ss_dssp SSCCEEEEEETTEEECTT
T ss_pred CCceEEEEEcCCCcCcce
Confidence 665 89999999998765
No 288
>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}
Probab=99.71 E-value=6e-17 Score=117.08 Aligned_cols=121 Identities=14% Similarity=0.164 Sum_probs=84.6
Q ss_pred eecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEE
Q psy14540 117 KVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNL 196 (291)
Q Consensus 117 ~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~ 196 (291)
.+.+|+.++|.|.+ .+ +.+.+.|++++..+...... .....
T Consensus 15 ~v~~G~~v~L~C~~-~~-~~~~~~w~k~g~~~~~~~~~--~~~~~----------------------------------- 55 (196)
T 3p2t_A 15 VISWGNSVTIWCQG-TL-EAREYRLDKEESPAPWDRQN--PLEPK----------------------------------- 55 (196)
T ss_dssp EEETTCCEEEEEEC-CT-TCCEEEEEETTSCSCSEEEC--CCSSS-----------------------------------
T ss_pred cCCCCCcEEEEeeC-CC-CCCEEEEEECCCCCcccccc--cccCC-----------------------------------
Confidence 67899999999998 45 67899999998766431100 00000
Q ss_pred EEeccceEEEEeeeecCCCeeEEEEeeeCCc--cCCceeEEEEec---CCCCCCCCcccccCCceEEEEEEeecCCCCce
Q psy14540 197 RVNEYTSSLSIATLSTGHSGNYTCVASNTVA--SDNHSSNLRVNV---PPHIGPFTFGELMEGVRTQVACVVQSGDLPLS 271 (291)
Q Consensus 197 ~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~--~~~~~~~l~v~~---~p~~~~~~~~~~~~g~~v~l~C~~~~~~p~~~ 271 (291)
....|.|.++..+|+|.|+|.+.|..+ ..+..+.|.|.. +|.+...+...+.+|+.++|.|.+ .+ +++.
T Consensus 56 ----~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~~l~V~~~~~~p~~~~~~~~~v~~G~~v~L~C~~-~~-~~~~ 129 (196)
T 3p2t_A 56 ----NKARFSIPSMTEDYAGRYRCYYRSPVGWSQPSDPLELVMTGAYSKPTLSALPSPLVTSGKSVTLLCQS-RS-PMDT 129 (196)
T ss_dssp ----SEEEEEESSCCGGGCEEEEEEEEETTEEBCCCCCEEEEEECSSCCCEEEEESCSEECTTCCEEEEEEE-EE-EEEE
T ss_pred ----ceEEEEeccCCcccCceEEEEEeCCCcccCCCccEEEEecCCCCCCEEEeCCcceecCCCeEEEEEec-CC-CCCE
Confidence 134567777777888888888888775 446667777753 344444444348899999999999 55 4568
Q ss_pred EEEEECCEEcc
Q psy14540 272 LQWYKNGLAIS 282 (291)
Q Consensus 272 v~W~~~~~~l~ 282 (291)
+.|+|+|..+.
T Consensus 130 ~~w~k~g~~~~ 140 (196)
T 3p2t_A 130 FLLCKERAAHP 140 (196)
T ss_dssp EEEEETTCCCG
T ss_pred EEEEeCCCccc
Confidence 99999998764
No 289
>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A
Probab=99.71 E-value=2.5e-17 Score=119.23 Aligned_cols=122 Identities=12% Similarity=0.144 Sum_probs=81.5
Q ss_pred eeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceE
Q psy14540 116 IKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSN 195 (291)
Q Consensus 116 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~ 195 (291)
..+.+|+.++|.|.+ .+.|. .+.|++++..+.........
T Consensus 14 ~~v~~G~~v~L~C~~-~~~~~-~~~W~k~g~~~~~~~~~~~~-------------------------------------- 53 (198)
T 1ugn_A 14 SVITQGSPVTLRCQG-GQETQ-EYRLYREKKTAPWITRIPQE-------------------------------------- 53 (198)
T ss_dssp SEEETTCCEEEEEEC-CTTCC-CEEEEESSSCCHHHHTSCHH--------------------------------------
T ss_pred CcccCCCcEEEEEEe-cCCCc-EEEEEECCcccccccccccc--------------------------------------
Confidence 367899999999998 56665 79999998766321100000
Q ss_pred EEEeccceEEEEeeeecCCCeeEEEEeeeCC-c--cCCceeEEEEec---CCCCCCCCcccccCCceEEEEEEeecCCCC
Q psy14540 196 LRVNEYTSSLSIATLSTGHSGNYTCVASNTV-A--SDNHSSNLRVNV---PPHIGPFTFGELMEGVRTQVACVVQSGDLP 269 (291)
Q Consensus 196 ~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~-~--~~~~~~~l~v~~---~p~~~~~~~~~~~~g~~v~l~C~~~~~~p~ 269 (291)
......|.|.++..+|+|.|+|.+.|.. + ..+..+.|.|.. +|.+...+...+.+|+.++|.|.+ .+. +
T Consensus 54 ---~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~g~~~~s~~~~l~V~~~~~~p~i~~~~~~~v~~G~~v~L~C~~-~~~-~ 128 (198)
T 1ugn_A 54 ---LVKKGQFPIPSITWEHTGRYRCYYGSDTAGRSESSDPLELVVTGAYIKPTLSAQPSPVVNSGGNVTLQCDS-QVA-F 128 (198)
T ss_dssp ---HHTTTEEEESSCCGGGCEEEEEEEEETTTEECCCCCCEEEEEECSSCCCEEEEESCSEEETTCCEEEEEEC-SSC-C
T ss_pred ---CCcccEEEECCCCHHHCeEEEEEEECCCCCcccCCccEEEEEcccccCCccccCCccccCCCCcEEEEEec-CCC-C
Confidence 0013457777777778888888887765 4 445667777776 344444333448899999999999 666 6
Q ss_pred ceEEEEECCEEcc
Q psy14540 270 LSLQWYKNGLAIS 282 (291)
Q Consensus 270 ~~v~W~~~~~~l~ 282 (291)
+.+.|+|+|..+.
T Consensus 129 ~~v~W~k~g~~~~ 141 (198)
T 1ugn_A 129 DGFILCKEGEDEH 141 (198)
T ss_dssp SEEEEEEC-----
T ss_pred cEEEEEECCCccC
Confidence 7999999998774
No 290
>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*
Probab=99.71 E-value=7.4e-17 Score=117.08 Aligned_cols=140 Identities=16% Similarity=0.197 Sum_probs=89.1
Q ss_pred eeecCCCceEEEEEeeC---CCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCC
Q psy14540 116 IKVHSGDRAGVQCLVTK---GDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNH 192 (291)
Q Consensus 116 ~~~~~g~~~~l~C~~~~---~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~ 192 (291)
+.+.+|+.+.|.|.+.. +.|.+.+.|++++..+........... ..| ..
T Consensus 4 v~v~~G~~v~L~C~~~~~~~~~~~~~~~W~~~~~~i~~~~~~~~~~~-----------------~~~-----------~~ 55 (201)
T 1dr9_A 4 VTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIW-----------------PEY-----------KN 55 (201)
T ss_dssp EEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEEC-----------------HHH-----------HT
T ss_pred EEEEeCCCEEEecccCCCcccccccEEEEEeCCcEEEEEeCCceeec-----------------Ccc-----------cc
Confidence 56789999999999842 235678999998876521100000000 000 00
Q ss_pred ceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCC-----ceeEEEEecCCCCCCCCcccccCCceEEEEEEeecCC
Q psy14540 193 SSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDN-----HSSNLRVNVPPHIGPFTFGELMEGVRTQVACVVQSGD 267 (291)
Q Consensus 193 ~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~-----~~~~l~v~~~p~~~~~~~~~~~~g~~v~l~C~~~~~~ 267 (291)
...+. .....+|.|.++..+|+|.|+|.+.+..+... ..+.|.|..++............|+.++|.|.+..|.
T Consensus 56 r~~~~-~~~~~~L~I~~v~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~p~~~~~~~~~g~~~~l~C~~~~g~ 134 (201)
T 1dr9_A 56 RTIFD-ITNNLSIVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPSISDFEIPTSNIRRIICSTSGGF 134 (201)
T ss_dssp TEEEE-STTTTEEEECSCCGGGCEEEEEEEEECCTTSCEEEEEEEEEEEEECCCCCCEEEEEECSSTTEEEEEEEEEEES
T ss_pred eeEEc-cCCCcEEEEecccchhCeEEEEEEEcCCCCccccccccEEEEEEcCCCCCCceEeccCCCCCeEEEEEecCCcc
Confidence 00000 01245789999999999999999998765442 4666777665321111111146789999999995599
Q ss_pred CCceEEEEECCEEccCC
Q psy14540 268 LPLSLQWYKNGLAISQP 284 (291)
Q Consensus 268 p~~~v~W~~~~~~l~~~ 284 (291)
|.|.|+|++||..+...
T Consensus 135 P~p~i~W~k~g~~l~~~ 151 (201)
T 1dr9_A 135 PEPHLSWLENGEELNAI 151 (201)
T ss_dssp SCEEEEEEESSCEECCS
T ss_pred CCCEEEEEECCEECccc
Confidence 99999999999988754
No 291
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}
Probab=99.71 E-value=1.1e-16 Score=119.50 Aligned_cols=131 Identities=26% Similarity=0.452 Sum_probs=95.1
Q ss_pred CcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCC
Q psy14540 113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNH 192 (291)
Q Consensus 113 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~ 192 (291)
+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+.........
T Consensus 22 ~~~~~v~~G~~v~L~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~----------------------------------- 65 (241)
T 3grw_A 22 KKLLAVPAANTVRFRCPA-AGNPTPSISWLKNGREFRGEHRIGGI----------------------------------- 65 (241)
T ss_dssp CCEEEEETTSEEEEECCE-ECSSCCEEEEEETTEECCGGGSTTCC-----------------------------------
T ss_pred CcceEEcCCCeEEEEEEe-cCCCCceeEEEECCcccCCCCcccce-----------------------------------
Confidence 445788899999999999 58888999999999887543221000
Q ss_pred ceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecC----CCCCC-CCcc-cccCCceEEEEEEeecC
Q psy14540 193 SSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVP----PHIGP-FTFG-ELMEGVRTQVACVVQSG 266 (291)
Q Consensus 193 ~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~----p~~~~-~~~~-~~~~g~~v~l~C~~~~~ 266 (291)
........|.|.++..+|+|.|+|.+.+..+.....+.|.|... |.+.. .+.. .+.+|+.++|.|.+ .+
T Consensus 66 ----~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~g~~v~L~C~~-~~ 140 (241)
T 3grw_A 66 ----KLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKV-YS 140 (241)
T ss_dssp ----EEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCCCCCEEEECTTCSEECCTTCCEEEEEEE-EC
T ss_pred ----eeeccceEEEEEeCCcccCEEEEEEEeecCCceEEEEEEEEeccCCCCceeecCCCccceecCCCEEEEEEEE-ec
Confidence 01112446778888888888888888888777777777777652 22211 1222 28899999999999 88
Q ss_pred CCCceEEEEE----CCEEccCC
Q psy14540 267 DLPLSLQWYK----NGLAISQP 284 (291)
Q Consensus 267 ~p~~~v~W~~----~~~~l~~~ 284 (291)
.|.+.+.|++ +|..+...
T Consensus 141 ~p~p~v~W~~~~~~~g~~~~~~ 162 (241)
T 3grw_A 141 DAQPHIQWLKHVEVNGSKVGPD 162 (241)
T ss_dssp SSCCEEEEEEECCSSSCSSCTT
T ss_pred CCCCEEEEEEcccCCCcccCCC
Confidence 8999999999 88877543
No 292
>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*
Probab=99.71 E-value=4.8e-17 Score=119.35 Aligned_cols=123 Identities=12% Similarity=0.043 Sum_probs=84.7
Q ss_pred eeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceE
Q psy14540 116 IKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSN 195 (291)
Q Consensus 116 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~ 195 (291)
..+.+|+.++|.|.+ .+ +.+.+.|+|+|..+...... .. ..
T Consensus 18 ~~v~~G~~vtL~C~~-~~-~~~~~~W~k~g~~~~~~~~~-~~-~~----------------------------------- 58 (218)
T 1uct_A 18 PVIPLDGSVKIQCQA-IR-EAYLTQLMIIKNSTYREIGR-RL-KF----------------------------------- 58 (218)
T ss_dssp SEEETTCCEEEEECC-CT-TCSEEEEEEEETTEEEECSE-EC-C------------------------------------
T ss_pred CccCCCCCEEEEEEc-CC-CCCEEEEEECCCcccccccc-cC-CC-----------------------------------
Confidence 467899999999998 45 67899999987654321100 00 00
Q ss_pred EEEeccce--EEEEeeeecCCCeeEEEEeeeCCc--cCCceeEEEEec---CCCCCCCCcccccCCceEEEEEEeecCCC
Q psy14540 196 LRVNEYTS--SLSIATLSTGHSGNYTCVASNTVA--SDNHSSNLRVNV---PPHIGPFTFGELMEGVRTQVACVVQSGDL 268 (291)
Q Consensus 196 ~~~~~~~~--~l~i~~~~~~~~g~y~C~~~~~~~--~~~~~~~l~v~~---~p~~~~~~~~~~~~g~~v~l~C~~~~~~p 268 (291)
.... .|.|.++..+|+|.|+|.+.|..+ ..+..+.|.|.. +|.+...+...+.+|+.++|.|.+ .+.|
T Consensus 59 ----~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~s~~~~l~V~~~~~~P~i~~~p~~~v~~G~~v~L~C~~-~~~~ 133 (218)
T 1uct_A 59 ----WNETDPEFVIDHMDANKAGRYQCQYRIGHYRFRYSDTLELVVTGLYGKPFLSADRGLVLMPGENISLTCSS-AHIP 133 (218)
T ss_dssp -------CCCEEEECSCCGGGCEEEEEEEEETTTEEEECCCEEEEEECSSCCCEEEESSCSEECTTCCCEEEEEC-SSSC
T ss_pred ----CcceeeEEEEcccccccCEEEEEEEEcCCCceeecCCEEEEEcCcccCCEEEeCCCCccCCCCCEEEEEeC-CCCC
Confidence 0012 577777778888888888887653 345566777764 455544444458999999999977 6777
Q ss_pred CceEEEEECCEEcc
Q psy14540 269 PLSLQWYKNGLAIS 282 (291)
Q Consensus 269 ~~~v~W~~~~~~l~ 282 (291)
.+.+.|+|+|..+.
T Consensus 134 ~~~~~W~k~g~~~~ 147 (218)
T 1uct_A 134 FDRFSLAKEGELSL 147 (218)
T ss_dssp CSEEEEEETTCSSC
T ss_pred CCEEEEEECCCccc
Confidence 88999999998775
No 293
>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}
Probab=99.71 E-value=5.7e-17 Score=123.22 Aligned_cols=179 Identities=18% Similarity=0.285 Sum_probs=86.0
Q ss_pred cCCCCCeEEEEEEeCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEec
Q psy14540 69 VRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPI 148 (291)
Q Consensus 69 ~~~~d~G~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~ 148 (291)
.++.|.+.|.|.+.+..+.......+.|.. .+..+.+.+|+.++|.|.+ .+ +.+.+.|++....-
T Consensus 3 ~~~~~~~~y~~~~~~~~g~~~~~~~~~v~~-------------~p~~v~v~~G~~v~L~C~~-~~-~~~~v~W~k~~~~~ 67 (270)
T 3qib_D 3 NERADLIAYLKQATKGGGGSGGGGGMKVIQ-------------TPRYLVKGQGQKAKMRCIP-EK-GHPVVFWYQQNKNN 67 (270)
T ss_dssp -------------------------CCCEE-------------ECSEEEEETTSCEEEEEEC-CT-TCCEEEEEEECTTC
T ss_pred chhhhHHHHHHHHhccCCccccccceeEEe-------------CCCeEEEcCCCCEEEEEEe-cC-CCceEEEEEECCCC
Confidence 456788999999987655443333222222 2344678899999999998 34 67899999832100
Q ss_pred cCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCC--
Q psy14540 149 LSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTV-- 226 (291)
Q Consensus 149 ~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~-- 226 (291)
........... . ....... ..+.|.-.. ......+|.|.++..+|+|.|.|.+.+..
T Consensus 68 --~~~~~~~~~~~-~-~~~~~~~---~~~r~~~~~--------------~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~ 126 (270)
T 3qib_D 68 --EFKFLINFQNQ-E-VLQQIDM---TEKRFSAEC--------------PSNSPCSLEIQSSEAGDSALYLCASSLNWSQ 126 (270)
T ss_dssp --CEEEEEEEETT-E-EEEECHH---HHHHEEEEC--------------CTTSCEEEEESSCCGGGCEEEEEEEESCTTC
T ss_pred --CcEEEEEECCC-C-ceecCCc---cCCcEEEEe--------------CCCcEEEEEECCCCHhHCeEEEEEEecCCCc
Confidence 00000000000 0 0000000 000111100 01124678899999999999999998642
Q ss_pred --ccCCceeEEEEec------CCCCCCCCcc--cccCCceEEEEEEeecCCCCc-eEEEEECCEEccC
Q psy14540 227 --ASDNHSSNLRVNV------PPHIGPFTFG--ELMEGVRTQVACVVQSGDLPL-SLQWYKNGLAISQ 283 (291)
Q Consensus 227 --~~~~~~~~l~v~~------~p~~~~~~~~--~~~~g~~v~l~C~~~~~~p~~-~v~W~~~~~~l~~ 283 (291)
........|.|.. +|.+...... .+..|+.++|+|.+.+..|.+ .+.|++||.++..
T Consensus 127 ~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~ 194 (270)
T 3qib_D 127 DTQYFGPGTRLLVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHS 194 (270)
T ss_dssp CCCEECCCEEEEEESCSTTCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECT
T ss_pred cceEECCcEEEEEccccccccCCceEEECCCccccccCCceEEEEEecceeCCCeEEEEEECCEECCC
Confidence 1223344566655 3433332221 155699999999994446766 8999999999865
No 294
>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}
Probab=99.71 E-value=1.4e-16 Score=113.92 Aligned_cols=113 Identities=14% Similarity=0.111 Sum_probs=80.7
Q ss_pred eecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEE
Q psy14540 117 KVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNL 196 (291)
Q Consensus 117 ~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~ 196 (291)
.+.+|+.++|.|.+ .+ +.+.+.|++++... .
T Consensus 18 ~v~~G~~v~L~C~~-~~-~~~~~~W~k~g~~~------~----------------------------------------- 48 (184)
T 2gi7_A 18 LVPLEKPVTLRCQG-PP-GVDLYRLEKLSSSR------Y----------------------------------------- 48 (184)
T ss_dssp EEETTCCEEEEEEC-ST-TCSEEEEEETTTCC------E-----------------------------------------
T ss_pred cccCCCcEEEEEeC-CC-CCCEEEEEECCccc------c-----------------------------------------
Confidence 68899999999998 45 77899999987540 0
Q ss_pred EEeccceEEEEeeeecCCCeeEEEEeeeCCc--cCCceeEEEEec---CCCCCCCCcccccCCceEEEEEEeecCCCCce
Q psy14540 197 RVNEYTSSLSIATLSTGHSGNYTCVASNTVA--SDNHSSNLRVNV---PPHIGPFTFGELMEGVRTQVACVVQSGDLPLS 271 (291)
Q Consensus 197 ~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~--~~~~~~~l~v~~---~p~~~~~~~~~~~~g~~v~l~C~~~~~~p~~~ 271 (291)
.....|.|.++..+|+|.|+|.+.|..+ ..+..+.|.|.. +|.+...+...+.+|+.++|.|.+ .+.| +.
T Consensus 49 ---~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~~~l~V~~~~~~p~i~~~p~~~v~~G~~v~l~C~~-~~~~-~~ 123 (184)
T 2gi7_A 49 ---QDQAVLFIPAMKRSLAGRYRCSYQNGSLWSLPSDQLELVATGVFAKPSLSAQPGPAVSSGGDVTLQCQT-RYGF-DQ 123 (184)
T ss_dssp ---ESSSEEEESSCCGGGCEEEEEEEEETTEEBCCCCCEEEEEESSSCCCEEEEECCCSSCCTTCEEEEEEC-SSCC-CE
T ss_pred ---CcccEEEECcCChhhCceEEEEEEcCCCccCCCCCEEEEecCcCCCCEEEeCCCceecCCCcEEEEEEc-CCCC-cE
Confidence 0123566666777777777777777653 334556666643 444544444448899999999998 6554 59
Q ss_pred EEEEECCEEccC
Q psy14540 272 LQWYKNGLAISQ 283 (291)
Q Consensus 272 v~W~~~~~~l~~ 283 (291)
+.|+|+|..+..
T Consensus 124 ~~w~k~g~~~~~ 135 (184)
T 2gi7_A 124 FALYKEGDPAPY 135 (184)
T ss_dssp EEEEECCCCTTS
T ss_pred EEEEECCCcCcc
Confidence 999999988753
No 295
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.70 E-value=4e-18 Score=134.33 Aligned_cols=126 Identities=21% Similarity=0.319 Sum_probs=96.6
Q ss_pred CcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCC
Q psy14540 113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNH 192 (291)
Q Consensus 113 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~ 192 (291)
+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+.......
T Consensus 165 ~~~~~v~~G~~v~L~C~~-~g~p~p~i~W~~~~~~~~~~~~~~------------------------------------- 206 (347)
T 2ifg_A 165 VPNASVDVGDDVLLRCQV-EGRGLEQAGWILTELEQSATVMKS------------------------------------- 206 (347)
T ss_dssp CCSSCCBTTCCEEEEEEE-ECSSCCCCCEEESCCCSSEEECCC-------------------------------------
T ss_pred CCceEEeCCCcEEEEEEE-ecCCCCEEEEEcCCceeecccccc-------------------------------------
Confidence 345678899999999999 688999999999886542110000
Q ss_pred ceEEEEeccceEEEEeeeecCCCe-eEEEEeeeCCccCCceeEEEEecCCCCCCCCcccccCCceEEEEEEeecCCCCce
Q psy14540 193 SSNLRVNEYTSSLSIATLSTGHSG-NYTCVASNTVASDNHSSNLRVNVPPHIGPFTFGELMEGVRTQVACVVQSGDLPLS 271 (291)
Q Consensus 193 ~~~~~~~~~~~~l~i~~~~~~~~g-~y~C~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~g~~v~l~C~~~~~~p~~~ 271 (291)
.......|.|.++..+|+| .|+|.|.|..+.....+.|.|..+|.+ ....+.+|+.++|.|.+ .|.|.|.
T Consensus 207 -----~~~~~~~L~i~~v~~~D~G~~Y~C~a~n~~g~~~~~~~l~V~~~P~i---~~~~~~~g~~v~l~C~~-~g~P~p~ 277 (347)
T 2ifg_A 207 -----GGLPSLGLTLANVTSDLNRKNVTCWAENDVGRAEVSVQVNVSFPASV---QLHTAVEMHHWCIPFSV-DGQPAPS 277 (347)
T ss_dssp -----CCSSEEEEEEESCCSTTTTCCEEECCEETTEECCEEECCCCBEEEEE---EECCCEESSSEEEEEEE-EEESCCE
T ss_pred -----eecccceEEEeeCChHHCCCeEEEEEEcCCCCEEEEEEEEEcCCCee---eeccCccCceEEEEEEe-eecCCCc
Confidence 0012456788888888888 899999988888888888888877775 11226789999999999 8889999
Q ss_pred EEEEECCEEccCCe
Q psy14540 272 LQWYKNGLAISQPD 285 (291)
Q Consensus 272 v~W~~~~~~l~~~~ 285 (291)
|.|+++|..+..+.
T Consensus 278 i~W~~~g~~l~~~~ 291 (347)
T 2ifg_A 278 LRWLFNGSVLNETS 291 (347)
T ss_dssp EEEEETTEECCCCS
T ss_pred EEEEeCCEECCCCc
Confidence 99999999997553
No 296
>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*
Probab=99.70 E-value=1.8e-16 Score=115.90 Aligned_cols=145 Identities=14% Similarity=0.196 Sum_probs=90.6
Q ss_pred CcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCC
Q psy14540 113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNH 192 (291)
Q Consensus 113 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~ 192 (291)
+....+.+|+.++|.|.+ .+.|.+.+.|+++.... ... +.+.... . ...+ ...
T Consensus 7 p~~~~v~~G~~v~L~C~~-~~~~~~~v~W~~~~~g~--~~~------------~~~~~~~-----~------~~~~-~~~ 59 (210)
T 1lk3_L 7 PPALTVSPGEKLTISCKA-SESVTSRMHWYQQKPGQ--QPK------------LLIYKAS-----N------LASG-VPA 59 (210)
T ss_dssp CSEEEECTTSCEEEEEEE-SSCCTTCEEEEEECTTS--CCE------------EEEETTT-----E------ECTT-CCT
T ss_pred CCcEEEcCCCCEEEEeeC-CCccCCCEEEEEECCCC--CeE------------EEEEccc-----c------ccCC-ccc
Confidence 455788999999999998 67888899999853110 000 0000000 0 0000 001
Q ss_pred ceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCcc-CCceeEEEEec---CCCCCCCCccc-ccCCceEEEEEEeecCC
Q psy14540 193 SSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVAS-DNHSSNLRVNV---PPHIGPFTFGE-LMEGVRTQVACVVQSGD 267 (291)
Q Consensus 193 ~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~-~~~~~~l~v~~---~p~~~~~~~~~-~~~g~~v~l~C~~~~~~ 267 (291)
.+.+........|.|.++..+|+|.|.|.+.+..+. ......|.|.. +|.+...+... +..|+.++|.|.+.+..
T Consensus 60 r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~ 139 (210)
T 1lk3_L 60 RFSGSGSGTDFTLTIDPVEADDTAIYFCQQSWNGPLTFGAGTKLELKRADAAPTVSIFPPSTEQLATGGASVVCLMNNFY 139 (210)
T ss_dssp TEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEB
T ss_pred cEEEEecCCEEEEEECCCCHHHCeEEEEEEEcCCCceeCCCEEEEEcCCCcCCeEEEECCchhhccCCcEEEEEEEEeEe
Confidence 111212233457899999999999999999887643 22334566654 45555433322 45899999999994445
Q ss_pred CCc-eEEEEECCEEccCC
Q psy14540 268 LPL-SLQWYKNGLAISQP 284 (291)
Q Consensus 268 p~~-~v~W~~~~~~l~~~ 284 (291)
|++ .|.|+|||.++...
T Consensus 140 p~~~~v~W~k~g~~~~~~ 157 (210)
T 1lk3_L 140 PRDISVKWKIDGTERRDG 157 (210)
T ss_dssp SSCCEEEEEETTEECCTT
T ss_pred CCceEEEEEeCCccCCCC
Confidence 654 99999999998655
No 297
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=1.8e-16 Score=100.97 Aligned_cols=90 Identities=23% Similarity=0.399 Sum_probs=74.5
Q ss_pred CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecC-CCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEE
Q psy14540 2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLA-GDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCT 80 (291)
Q Consensus 2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~ 80 (291)
||.|...+.+..+.+|+.+.|.|.+ .|.+.+.|+|+|..+. ..++.+ ......+.|.|.+++.+|+|.|+|.
T Consensus 7 p~~~~~~~~~~~v~~G~~v~l~C~v--~p~p~v~W~k~g~~l~~~~r~~i-----~~~~~~~~L~I~~v~~~D~G~Y~C~ 79 (100)
T 2yuz_A 7 GLKILTPLTDQTVNLGKEICLKCEI--SENIPGKWTKNGLPVQESDRLKV-----VQKGRIHKLVIANALTEDEGDYVFA 79 (100)
T ss_dssp CCCCSBCCCCEEEETTSCCCEEEEC--SSCCCEEEEETTEECCCCSSEEE-----EECSSEEEEEESSCCGGGCSEEEEE
T ss_pred CCEEeccCCceEEcCCCCEEEEEEe--CCCCeEEEEECCEECCCCCcEEE-----EEeCCEEEEEECCCChhhCEEEEEE
Confidence 6889999999999999999999999 6788999999999987 444433 2233457799999999999999999
Q ss_pred EeCCCCceeeeeeEEEEcCC
Q psy14540 81 ATNRVGSQTHSADMRVYDAP 100 (291)
Q Consensus 81 ~~~~~~~~~~~~~l~v~~~~ 100 (291)
+.|. .......|.|..+|
T Consensus 80 a~N~--~~~~~a~L~V~~~P 97 (100)
T 2yuz_A 80 PDAY--NVTLPAKVHVISGP 97 (100)
T ss_dssp ESSS--CCCEEEEEEEECCS
T ss_pred EcCC--CeeEEEEEEEeCCC
Confidence 9986 55677788888765
No 298
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Probab=99.69 E-value=1.1e-16 Score=118.75 Aligned_cols=129 Identities=28% Similarity=0.414 Sum_probs=94.4
Q ss_pred cceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCc
Q psy14540 114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHS 193 (291)
Q Consensus 114 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~ 193 (291)
....+.+|+.+.|.|.+ .+.|.+.+.|++++..+.........
T Consensus 27 ~~~~v~~G~~v~L~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~------------------------------------ 69 (231)
T 3ojm_B 27 RLHAVPAANTVKFRCPA-GGNPMPTMRWLKNGKEFKQEHRIGGY------------------------------------ 69 (231)
T ss_dssp SCEEEETTSCEEEECCE-EEESCCEEEEEETTEECCGGGSTTCC------------------------------------
T ss_pred eeEEEccCCCEEEEEec-ccCCCCeEEEEECCccccccccccce------------------------------------
Confidence 45778899999999999 57888899999999887543221000
Q ss_pred eEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCC----CCCCC-Ccc-cccCCceEEEEEEeecCC
Q psy14540 194 SNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPP----HIGPF-TFG-ELMEGVRTQVACVVQSGD 267 (291)
Q Consensus 194 ~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p----~~~~~-~~~-~~~~g~~v~l~C~~~~~~ 267 (291)
........|.|.++..+|+|.|+|.+.|..+.....+.|.|...+ .+... +.. .+.+|+.++|.|.+ .+.
T Consensus 70 ---~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~-~~~ 145 (231)
T 3ojm_B 70 ---KVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKV-YSD 145 (231)
T ss_dssp ---EEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCCCCCEECTTCSCCEEEETTCCEEEECCE-ECS
T ss_pred ---eeecCcceEEEecCCcccCEEEEEEEecccCcccccEEEEEEcCCCCCCceeeccCCceEEEeCCcEEEEEEE-ecC
Confidence 011123467888888888888888888888777777778776532 22221 222 28899999999999 888
Q ss_pred CCceEEEEE----CCEEccC
Q psy14540 268 LPLSLQWYK----NGLAISQ 283 (291)
Q Consensus 268 p~~~v~W~~----~~~~l~~ 283 (291)
|.+.+.|++ +|..+..
T Consensus 146 p~p~v~W~~~~~~~g~~~~~ 165 (231)
T 3ojm_B 146 AQPHIQWIKHVEKNGSKYGP 165 (231)
T ss_dssp SCCEEEEEEECCBTTBSBCT
T ss_pred CCCEEEEEECCCCCCccccC
Confidence 999999999 7777643
No 299
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4
Probab=99.69 E-value=2e-16 Score=101.01 Aligned_cols=93 Identities=24% Similarity=0.357 Sum_probs=77.3
Q ss_pred CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCC-CeeEeceEEeeccceEEEEEEeecCCCCCeEEEEE
Q psy14540 2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAG-DRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCT 80 (291)
Q Consensus 2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~ 80 (291)
||.|...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+.. .+... .......++|.|.+++.+|+|.|+|.
T Consensus 5 ~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~----~~~~~~~~~L~i~~v~~~D~G~Y~C~ 80 (99)
T 1g1c_A 5 APKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYW----YWPEDNVCELVIRDVTGEDSASIMVK 80 (99)
T ss_dssp EEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEE----EEEETTEEEEEECSCCGGGCEEEEEE
T ss_pred CCceEecCcceEEcCCCcEEEEEEEEEeCCCEEEEEECCEECCCCCCEEE----EEcCCCEEEEEECCCCcCCCEEEEEE
Confidence 78898999999999999999999999988999999999998873 22221 11223456799999999999999999
Q ss_pred EeCCCCceeeeeeEEEEc
Q psy14540 81 ATNRVGSQTHSADMRVYD 98 (291)
Q Consensus 81 ~~~~~~~~~~~~~l~v~~ 98 (291)
+.|..|.....+.|.|..
T Consensus 81 a~N~~g~~~~~~~l~V~~ 98 (99)
T 1g1c_A 81 AINIAGETSSHAFLLVQA 98 (99)
T ss_dssp EEETTEEEEEEEEEEEEC
T ss_pred EEECCCcEEEEEEEEEec
Confidence 999998888888887764
No 300
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}
Probab=99.69 E-value=2e-16 Score=101.79 Aligned_cols=93 Identities=18% Similarity=0.343 Sum_probs=78.1
Q ss_pred CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCC-CeeEeceEEeeccceEEEEEEeecCCCCCeEEEEE
Q psy14540 2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAG-DRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCT 80 (291)
Q Consensus 2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~ 80 (291)
+|.|...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+.. .++.. .......+|.|.+++.+|+|.|+|.
T Consensus 8 ~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~-----~~~~~~~~L~i~~~~~~D~G~Y~C~ 82 (103)
T 3qp3_A 8 APRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHY-----TNTSGVLTLEILDCHTDDSGTYRAV 82 (103)
T ss_dssp EEEEEECCCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCCSSEEE-----EEETTEEEEEECSCCGGGCEEEEEE
T ss_pred CCEEEeCCcceEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCCCEEE-----EECCCEEEEEEcCCCcccCEEEEEE
Confidence 68888889999999999999999999989999999999998873 33322 2233456799999999999999999
Q ss_pred EeCCCCceeeeeeEEEEcC
Q psy14540 81 ATNRVGSQTHSADMRVYDA 99 (291)
Q Consensus 81 ~~~~~~~~~~~~~l~v~~~ 99 (291)
+.|..|.......|.|...
T Consensus 83 a~N~~G~~~~~~~l~V~~~ 101 (103)
T 3qp3_A 83 CTNYKGEASDYATLDVTGG 101 (103)
T ss_dssp EEETTEEEEEEEEEEEECC
T ss_pred EEeCCCcEEEEEEEEEECC
Confidence 9999998888888888653
No 301
>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...
Probab=99.69 E-value=3.2e-16 Score=114.62 Aligned_cols=140 Identities=15% Similarity=0.214 Sum_probs=91.3
Q ss_pred ceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCce
Q psy14540 115 SIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSS 194 (291)
Q Consensus 115 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~ 194 (291)
.+.+.+|+.++|.|.+. |.+.+.|+++.... ... +.+....... ......+
T Consensus 9 ~~~v~~G~~v~L~C~~~---~~~~v~W~k~~~~~--~~~------------~~~~~~~~~~------------~~~~~r~ 59 (211)
T 3tv3_L 9 SASGSPGQSITISCTGT---SNNFVSWYQQHAGK--APK------------LVIYDVNKRP------------SGVPDRF 59 (211)
T ss_dssp EEEECTTCEEEEEEECC---CSSCEEEEEECTTS--CCE------------EEEBTTTBCC------------TTSCTTE
T ss_pred eEEEcCCCCEEEEEEEC---CCCeEEEEEECCCC--CCE------------EEEEEecccC------------CCCcCcE
Confidence 57888999999999983 88899999842110 000 0000000000 0001111
Q ss_pred EEEEeccceEEEEeeeecCCCeeEEEEeeeCCc--cCCceeEEEEe----cCCCCCCCCccc-ccCCceEEEEEEeecCC
Q psy14540 195 NLRVNEYTSSLSIATLSTGHSGNYTCVASNTVA--SDNHSSNLRVN----VPPHIGPFTFGE-LMEGVRTQVACVVQSGD 267 (291)
Q Consensus 195 ~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~--~~~~~~~l~v~----~~p~~~~~~~~~-~~~g~~v~l~C~~~~~~ 267 (291)
.+.......+|.|.++..+|+|.|.|.+.+..+ .......|.|. .+|.+...+... +..|+.++|.|.+.+..
T Consensus 60 ~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~ 139 (211)
T 3tv3_L 60 SGSKSGNTASLTVSGLQTDDEAVYYCGSLVGNWDVIFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFY 139 (211)
T ss_dssp EEEEETTEEEEEEESCCGGGCEEEEEEEEETTTEEEECCCEEEEECCSCCBCCEEEEECCCHHHHHTTCEEEEEEEEEEB
T ss_pred EEEccCCEEEEEECCCChhHCEEEEEEEecCCCceeECCCceEEEeCCCCcCCeeEecCCchhhhcCCCeEEEEEeeeec
Confidence 222233456899999999999999999998876 45566677777 456555544333 45799999999994333
Q ss_pred C-CceEEEEECCEEccC
Q psy14540 268 L-PLSLQWYKNGLAISQ 283 (291)
Q Consensus 268 p-~~~v~W~~~~~~l~~ 283 (291)
| .+.+.|++||.++..
T Consensus 140 p~~~~v~W~k~g~~l~~ 156 (211)
T 3tv3_L 140 PGAVTVAWKADSSPVKA 156 (211)
T ss_dssp SSCCEEEEEETTEEECT
T ss_pred CCCeEEEEEECCeecCC
Confidence 3 589999999999865
No 302
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3
Probab=99.69 E-value=1.7e-16 Score=112.51 Aligned_cols=131 Identities=15% Similarity=0.155 Sum_probs=86.2
Q ss_pred eeecCCCceEEEEEee-CCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCce
Q psy14540 116 IKVHSGDRAGVQCLVT-KGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSS 194 (291)
Q Consensus 116 ~~~~~g~~~~l~C~~~-~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~ 194 (291)
+.+.+|+.++|.|... ...+.+.+.|++++..+..... +. ..+ ...+.|.
T Consensus 6 v~~~~G~~v~L~c~~~~~~~~~~~i~W~k~~~~i~~~~~------~~----~~~-----~~~~r~~-------------- 56 (176)
T 1hng_A 6 VWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKR------KM----KPF-----LKSGAFE-------------- 56 (176)
T ss_dssp EEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEET------TS----CCE-----ESSTTEE--------------
T ss_pred EEEEcCCcEEEcCCCCCcccccccEEEEeCCceeEEEcC------CC----eec-----CCCCeEE--------------
Confidence 5677999999999431 2356679999999865421000 00 000 0011111
Q ss_pred EEEEeccceEEEEeeeecCCCeeEEEEeeeCCccC--CceeEEEEecCCCCCCCCcccccCCceEEEEEEeecCCCCceE
Q psy14540 195 NLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASD--NHSSNLRVNVPPHIGPFTFGELMEGVRTQVACVVQSGDLPLSL 272 (291)
Q Consensus 195 ~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~--~~~~~l~v~~~p~~~~~~~~~~~~g~~v~l~C~~~~~~p~~~v 272 (291)
+ ..+++|.|.++..+|+|.|+|.+.|..+.. ...+.|.|..++.-. .....+..++|.|.+ .+.|+|.|
T Consensus 57 ---~-~~~gsL~I~~v~~~D~G~Y~C~~~n~~g~~~~~~~~~l~V~~~~~~p----~i~~~~~~v~L~C~~-~g~p~p~i 127 (176)
T 1hng_A 57 ---I-LANGDLKIKNLTRDDSGTYNVTVYSTNGTRILNKALDLRILEMVSKP----MIYWECSNATLTCEV-LEGTDVEL 127 (176)
T ss_dssp ---E-CTTSCEEESSCCGGGCEEEEEEEEETTCCEEEEEEEEEEEECCCCCC----EEEEETTTTEEEEEC-SSCSSCEE
T ss_pred ---E-CCCCcEEEcccccccCEEEEEEEEeCCCCEEEEEEEEEEEeCCCCCC----EEEecCCcEEEEEEe-cCCCCcEE
Confidence 1 113458999999999999999999988775 666777777643211 112234569999999 88888999
Q ss_pred EEEECCEEccCC
Q psy14540 273 QWYKNGLAISQP 284 (291)
Q Consensus 273 ~W~~~~~~l~~~ 284 (291)
.|++||++|...
T Consensus 128 ~W~~~g~~l~~~ 139 (176)
T 1hng_A 128 KLYQGKEHLRSL 139 (176)
T ss_dssp EEEETTEEEEEE
T ss_pred EEEECCEECCCC
Confidence 999999988643
No 303
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}
Probab=99.69 E-value=1.5e-16 Score=101.78 Aligned_cols=95 Identities=25% Similarity=0.470 Sum_probs=77.5
Q ss_pred CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEE
Q psy14540 2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTA 81 (291)
Q Consensus 2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~ 81 (291)
||.|...|....+.+|+.++|.|.+.+.|.+.+.|++++..+...... .........+.|.|.+++..|+|.|+|.+
T Consensus 5 ~P~~~~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~---~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a 81 (100)
T 2kdg_A 5 PPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLH---KMIVSEKGLHSLIFEVVRASDAGAYACVA 81 (100)
T ss_dssp EEECCCCCCCEEEETTCCEEEEEECEEESCCEEEEEETTEEECCCSSS---CEEEETTTEEEEEESSCCGGGCEEEEEEE
T ss_pred CCeEEeCCCCEEecCCCEEEEEEEEEeeCCCEEEEEECCEECcCCCcE---EEEEcCCCeEEEEECCCCcccCEEEEEEE
Confidence 688888899999999999999999998888999999999887732110 01122334467999999999999999999
Q ss_pred eCCCCceeeeeeEEEEcC
Q psy14540 82 TNRVGSQTHSADMRVYDA 99 (291)
Q Consensus 82 ~~~~~~~~~~~~l~v~~~ 99 (291)
.|..|.....+.|.|...
T Consensus 82 ~n~~g~~~~~~~l~V~~~ 99 (100)
T 2kdg_A 82 KNRAGEATFTVQLDVLAK 99 (100)
T ss_dssp EETTEEEEEEEEEEEECC
T ss_pred EcCCCeEEEEEEEEEEec
Confidence 999998888888888753
No 304
>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}
Probab=99.69 E-value=9.6e-17 Score=117.93 Aligned_cols=130 Identities=15% Similarity=0.223 Sum_probs=85.2
Q ss_pred ecCCCceEEEEEeeCCC---C-CceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCc
Q psy14540 118 VHSGDRAGVQCLVTKGD---P-PLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHS 193 (291)
Q Consensus 118 ~~~g~~~~l~C~~~~~~---p-~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~ 193 (291)
+.+|+.++|.|.+. +. | .+.+.|++++..+...... .. ...+.|.|.-
T Consensus 23 v~~G~~v~L~C~~~-g~~~~p~~~~v~W~k~~~~~~~~~~~------------~~---~~~~~~~~~~------------ 74 (218)
T 2rgs_A 23 LMISLTPKVTCVVV-DVSEDDPDVQISWFVNNVEVHTAQTQ------------TH---REDYNSTIRV------------ 74 (218)
T ss_dssp HCTTSCCEEEEEEE-EECTTSCCEEEEEEETTEEECCCEEE------------EE---EETTTTEEEE------------
T ss_pred hccCCCeeEEEEEc-CCccCCCceEEEEEECCccccCcccc------------cc---cccCCCeEEE------------
Confidence 67899999999995 54 4 4799999999776432100 00 0011233321
Q ss_pred eEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccC--CceeEE--EEecCCCCCCCCccc-ccCCceEEEEEEeecCCC
Q psy14540 194 SNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASD--NHSSNL--RVNVPPHIGPFTFGE-LMEGVRTQVACVVQSGDL 268 (291)
Q Consensus 194 ~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~--~~~~~l--~v~~~p~~~~~~~~~-~~~g~~v~l~C~~~~~~p 268 (291)
...|.|.++..+|+|.|+|.|.|..+.. ...+.+ .+..+|.+...+... ...|+.++|.|.+.+.+|
T Consensus 75 --------~~~L~I~~~~~~D~g~Y~C~~~~~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~g~~P 146 (218)
T 2rgs_A 75 --------VSTLPIQHQDWMSGKEFKCKVNNKDLPSPIERTISKIKGLVRAPQVYILPPPAEQLSRKDVSLTCLVVGFNP 146 (218)
T ss_dssp --------EEEEECCHHHHHTTCCEEEEEEETTCSSCEEEEECCCCCCCBCCEEEEECCCGGGTTSSEEEEEEEEEEEBS
T ss_pred --------EEEEEEcHHHcCCCCeEEEEEECCcCCCcceEEEeecCCCCCCCEEEEECCChHHhcCCceEEEEEEEeeeC
Confidence 2468888888899999999999876543 222211 334566554433332 346999999999944367
Q ss_pred Cc-eEEEEECCEEccC
Q psy14540 269 PL-SLQWYKNGLAISQ 283 (291)
Q Consensus 269 ~~-~v~W~~~~~~l~~ 283 (291)
++ .|+|+|||..+..
T Consensus 147 ~~~~v~W~k~g~~~~~ 162 (218)
T 2rgs_A 147 GDISVEWTSNGHTEEN 162 (218)
T ss_dssp SCCEEEEEETTEEECC
T ss_pred CCcEEEEEECCEeccC
Confidence 65 9999999998743
No 305
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}
Probab=99.69 E-value=2.7e-16 Score=100.39 Aligned_cols=94 Identities=22% Similarity=0.444 Sum_probs=77.0
Q ss_pred CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEE
Q psy14540 2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTA 81 (291)
Q Consensus 2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~ 81 (291)
||.|...|....+.+|+.+.|.|.+.+.|.+.+.|++++..+...... .........++|.|.+++..|+|.|+|.+
T Consensus 5 ~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~~~~~~---~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a 81 (99)
T 1u2h_A 5 PPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRR---FAEEAEGGLCRLRILAAERGDAGFYTCKA 81 (99)
T ss_dssp EEEEEECCCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCBTTE---EEEECGGGEEEEEESSCCGGGCEEEEEEE
T ss_pred CCEEEEcCCceEecCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCCE---EEEECCCCEEEEEEccCCcCCCEEEEEEE
Confidence 788999999999999999999999998888999999999988732111 11123344568999999999999999999
Q ss_pred eCCCCceeeeeeEEEEc
Q psy14540 82 TNRVGSQTHSADMRVYD 98 (291)
Q Consensus 82 ~~~~~~~~~~~~l~v~~ 98 (291)
.|..|.....+.|.|.+
T Consensus 82 ~N~~g~~~~~~~l~V~~ 98 (99)
T 1u2h_A 82 VNEYGARQCEARLEVRG 98 (99)
T ss_dssp EETTEEEEEEEEEEEEC
T ss_pred EECCCceeEEEEEEEEC
Confidence 99988888888887753
No 306
>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*
Probab=99.69 E-value=3.9e-16 Score=114.33 Aligned_cols=145 Identities=17% Similarity=0.288 Sum_probs=92.4
Q ss_pred CcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCC
Q psy14540 113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNH 192 (291)
Q Consensus 113 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~ 192 (291)
+..+.+.+|+.++|.|.+ .+.|.+.+.|++..... .......... . .... ...
T Consensus 8 p~~~~v~~G~~v~L~C~~-~~~~~~~v~W~k~~~~~--~~~~~~~~~~--~-------~~~~---------------~~~ 60 (213)
T 3r06_A 8 PSSLPASLGDRVTINCQA-SQDISNYLNWYQQKPGK--APKLLIYYTN--K-------LADG---------------VPS 60 (213)
T ss_dssp CSEEEECTTCCEEEEEEE-SSCCTTCEEEEEECTTS--CCEEEEETTT--E-------ECTT---------------CCT
T ss_pred CCEEEecCCCcEEEEEEe-CCCcCceEEEEEECCCC--CcEEEEEEcC--c-------CCCC---------------CCC
Confidence 445788899999999999 67788999999843110 0000000000 0 0000 011
Q ss_pred ceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCc-cCCceeEEEE---ecCCCCCCCCccc-ccCCceEEEEEEeecCC
Q psy14540 193 SSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVA-SDNHSSNLRV---NVPPHIGPFTFGE-LMEGVRTQVACVVQSGD 267 (291)
Q Consensus 193 ~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~-~~~~~~~l~v---~~~p~~~~~~~~~-~~~g~~v~l~C~~~~~~ 267 (291)
.+.+........|.|.++..+|+|.|.|.+.+..+ .......|.| ..+|.+...+... +..|+.++|.|.+.+++
T Consensus 61 r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~~~~v~l~C~~~g~~ 140 (213)
T 3r06_A 61 RFSGSGSGRDSSFTISSLESEDIGSYYCQQYYNYPWTFGPGTKLEIKRADAKPTVSIFPPSSEQLGTGSATLVCFVNNFY 140 (213)
T ss_dssp TEEEEEETTEEEEEESSCCGGGCSEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEB
T ss_pred cEEEeccCCEEEEEECCCCcccCEEEEEecccCCceEEcCCceEEEeccCCCceeeeeCCCceecCCCCcEEEEEEeeec
Confidence 12222223456899999999999999999988653 2344456777 4456665544333 56788899999994444
Q ss_pred C-CceEEEEECCEEccCC
Q psy14540 268 L-PLSLQWYKNGLAISQP 284 (291)
Q Consensus 268 p-~~~v~W~~~~~~l~~~ 284 (291)
| .+.|.|++||..+..+
T Consensus 141 p~~~~v~W~k~g~~l~~~ 158 (213)
T 3r06_A 141 PKDINVKWKVDGSEKRDG 158 (213)
T ss_dssp SSCEEEEEEETTEEECTT
T ss_pred CCceEEEEEECCcccCCc
Confidence 4 4699999999998754
No 307
>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine; HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*
Probab=99.68 E-value=6.7e-17 Score=119.93 Aligned_cols=164 Identities=13% Similarity=0.255 Sum_probs=84.7
Q ss_pred eEEEEEEeCCCCceeeeeeEEEEcCCCCCcccceeccCCccee-ecCCCceEEEEEeeCCC--C-CceeEEeECCEeccC
Q psy14540 75 GIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIK-VHSGDRAGVQCLVTKGD--P-PLTISWLKNGLPILS 150 (291)
Q Consensus 75 G~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~l~C~~~~~~--p-~~~~~W~~~~~~~~~ 150 (291)
|.|.|.+.+..+. .... .+... ....+..+.... +..|+.++|.|.+.+.+ | ...++|+++|..+..
T Consensus 1 ~~~~~~~~~~~~~--c~~~-~~~~~------P~v~i~~ps~~~~l~~g~~~~L~C~v~g~~p~P~~i~v~W~k~g~~l~~ 71 (240)
T 4acp_A 1 GTKSCDKTHTCPP--CPAP-ELLGG------PSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHN 71 (240)
T ss_dssp -------------------------------CEEEEECCCHHHHHSSSSCCEEEEEEESCCC--CCCEEEEEETTEEECC
T ss_pred CceeeeeeecCCC--CCcc-ccCCC------CEEEEECcChHHhcccCCCcEEEEEEeccccCCCccEEEEEECCcccCC
Confidence 6799998876542 1000 00011 112223333344 55799999999996555 4 448999999988743
Q ss_pred CCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCC
Q psy14540 151 DAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDN 230 (291)
Q Consensus 151 ~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~ 230 (291)
.... .......|.|.- .+.|.|.....+|+|.|+|.|.+..+...
T Consensus 72 ~~~~---------------~~~~~~~g~~~~--------------------~s~L~i~~~~~~d~~~YtC~v~h~~~~~~ 116 (240)
T 4acp_A 72 AKTK---------------PREEQYNSTYRV--------------------VSVLTVLHQDWLNGKEYKCKVSNKALPAP 116 (240)
T ss_dssp CEEC---------------CCEEC---CEEE--------------------EEEEECCHHHHHHTCCEEEEEECC----C
T ss_pred ceec---------------cceECCCCeEEE--------------------EEEEEEechhccCCCEEEEEEEcCCCCcc
Confidence 2100 000112234432 24567777777788999999998775332
Q ss_pred ceeEEE----EecCCCCCCCCccc-ccCCceEEEEEEeecCCCC-ceEEEEECCEEcc
Q psy14540 231 HSSNLR----VNVPPHIGPFTFGE-LMEGVRTQVACVVQSGDLP-LSLQWYKNGLAIS 282 (291)
Q Consensus 231 ~~~~l~----v~~~p~~~~~~~~~-~~~g~~v~l~C~~~~~~p~-~~v~W~~~~~~l~ 282 (291)
....+. +..+|.+.+.+... ...|+.++|.|.+.+.+|+ ..|.|+|||.++.
T Consensus 117 ~~~~i~~~~~~~~~P~V~v~~~~~~~~~g~~~~L~C~~~gf~P~~i~v~W~k~g~~~~ 174 (240)
T 4acp_A 117 IEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPEN 174 (240)
T ss_dssp EEEEECCCCSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEECS
T ss_pred ccccccccCCCCCCCEEEEECCChHHhcCCceEEEEEEeEEeCCCcEEEEEECCEECC
Confidence 222221 23456655544433 3358999999999444666 4899999999875
No 308
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.68 E-value=7.1e-16 Score=110.24 Aligned_cols=115 Identities=21% Similarity=0.388 Sum_probs=85.2
Q ss_pred eeecCCCceEEEEEeeCCCCCc--eeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCc
Q psy14540 116 IKVHSGDRAGVQCLVTKGDPPL--TISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHS 193 (291)
Q Consensus 116 ~~~~~g~~~~l~C~~~~~~p~~--~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~ 193 (291)
..+.+|+.++|.|.+ .+.|.+ .+.|++++..+.......
T Consensus 8 ~~v~~G~~v~l~C~~-~~~~~p~~~~~W~k~~~~l~~~~~~~-------------------------------------- 48 (184)
T 3b5h_A 8 TVEDLGSKILLTCSL-NDSATEVTGHRWLKGGVVLKEDALPG-------------------------------------- 48 (184)
T ss_dssp EEEEETTEEEEEEEE-ESCSSCCCEEEEESSSEEEECTTCCC--------------------------------------
T ss_pred EEEecCCCEEEEEEC-CCCCCCceEEEEEeCCEEeecccccC--------------------------------------
Confidence 456789999999998 455655 999999997764432110
Q ss_pred eEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCCCCCCCCccc-ccCCceEEEEEEeecCCC-Cce
Q psy14540 194 SNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGPFTFGE-LMEGVRTQVACVVQSGDL-PLS 271 (291)
Q Consensus 194 ~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~-~~~g~~v~l~C~~~~~~p-~~~ 271 (291)
....|.|. ..+|+|.|+|.+.| .....+.|.|..+|.+...+... +.+|+.++|.|.+ .+.| .+.
T Consensus 49 -------~~~~l~i~--~~~d~G~Y~C~~~n---~~~~~~~l~V~~~P~~~~~~~~~~~~~g~~~~l~C~~-~g~p~~~~ 115 (184)
T 3b5h_A 49 -------QKTEFKVD--SDDQWGEYSCVFLP---EPMGTANIQLHGPPRVKAVKSSEHINEGETAMLVCKS-ESVPPVTD 115 (184)
T ss_dssp -------SEEEEEEC--GGGCCEEEEEEEES---TTSCEEEEEECCSCCCEESCSEEEECTTSCEEEEEEC-CCSSCCCE
T ss_pred -------CcEEEEEe--chhhCeEEEEEEEC---CcCcEEEEEEecCCceeecCCCcEEcCCCcEEEEEEE-CCCCCCCe
Confidence 01123333 57889999999987 34467788899989887776554 8999999999999 7888 799
Q ss_pred EEEEE----CCEEcc
Q psy14540 272 LQWYK----NGLAIS 282 (291)
Q Consensus 272 v~W~~----~~~~l~ 282 (291)
+.|++ ++..+.
T Consensus 116 i~W~~~~~~~~~~~~ 130 (184)
T 3b5h_A 116 WAWYKITDSEDKALM 130 (184)
T ss_dssp EEEEECCSSSCEECC
T ss_pred EEEEEcCCCCCEEee
Confidence 99999 444553
No 309
>1hxm_A Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Probab=99.68 E-value=4.2e-15 Score=109.59 Aligned_cols=133 Identities=19% Similarity=0.268 Sum_probs=83.6
Q ss_pred cceeecceeeeecCCcEEEEEEecCCC--CCeeEEEEC--Cee---cC----------CCeeEeceEEeeccceEEEEEE
Q psy14540 4 QLIYKFIQQTLQPGPPVSLKCIATGNP--TPHISWKLD--GYP---LA----------GDRFVMGQYMSLHGDVISHVNI 66 (291)
Q Consensus 4 ~~~~~~~~~~v~~g~~v~l~C~~~~~~--~~~v~W~~~--~~~---~~----------~~~~~~~~~~~~~~~~~~~l~i 66 (291)
.+...|..+.+.+|++++|.|.+.+.+ ...+.|++. +.. +. ..++.... ......++|.|
T Consensus 3 ~v~q~p~~v~v~~G~~vtL~C~~s~~~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~R~~~~~---~~~~~~~sL~I 79 (229)
T 1hxm_A 3 ELVPEHQTVPVSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDI---DIAKNLAVLKI 79 (229)
T ss_dssp CEEESCSEEEEETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEE---EGGGTEEEEEE
T ss_pred ccEeCCCEEEEcCCCCEEEEeEecCCccCcceEEEEEECCCCCcEEEEEcCCccCCCcCCeEEEEE---cCCCCEEEEEE
Confidence 355677888999999999999998533 467999984 221 10 11121110 12345578999
Q ss_pred eecCCCCCeEEEEEEeCCC------C--ceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCc-
Q psy14540 67 SSVRVEDSGIYQCTATNRV------G--SQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPL- 137 (291)
Q Consensus 67 ~~~~~~d~G~y~C~~~~~~------~--~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~- 137 (291)
.+++.+|+|.|.|.+.+.. . .....+.|.|......+. .+. +.+.. ...+|.|.+...+|.+
T Consensus 80 ~~v~~~Dsg~Y~C~~~~~~~~~~~~~~~~~g~gt~L~V~~~~~~~~-------~P~-v~~~~-~~~~L~C~~~g~~P~~i 150 (229)
T 1hxm_A 80 LAPSERDEGSYYCACDTLGMGGEYTDKLIFGKGTRVTVEPRSQPHT-------KPS-VFVMK-NGTNVACLVKEFYPKDI 150 (229)
T ss_dssp SSCCGGGCEEEEEEEECCCCSSSCCCCCEEBCCEEEEEECCSCCCB-------CCE-EEEEE-ETTEEEEEEESCBSSCC
T ss_pred CcCCHhHCeEEEEEEecCCCcccccchhhcCccEEEEEeccCCCCc-------CCc-EEEcC-CCCeEEEEEEEEeCCCE
Confidence 9999999999999998652 1 122345677765221110 111 11111 1358999996667764
Q ss_pred eeEEeECCEecc
Q psy14540 138 TISWLKNGLPIL 149 (291)
Q Consensus 138 ~~~W~~~~~~~~ 149 (291)
.+.|+++ ..+.
T Consensus 151 ~v~W~~~-~~~~ 161 (229)
T 1hxm_A 151 RINLVSS-KKIT 161 (229)
T ss_dssp EEEEECS-SEEE
T ss_pred EEEEecC-CEEe
Confidence 8999998 6553
No 310
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=1.3e-16 Score=103.97 Aligned_cols=98 Identities=33% Similarity=0.589 Sum_probs=81.5
Q ss_pred CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCC-eeEeceEEeeccceEEEEEEeecCCCCCeEEEEE
Q psy14540 2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGD-RFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCT 80 (291)
Q Consensus 2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~ 80 (291)
+|.|...+....+.+|+.++|.|.+.+.|.+.+.|++++..+... .... .......++|.|.+++.+|+|.|+|.
T Consensus 9 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~----~~~~~~~~~L~i~~v~~~D~G~Y~C~ 84 (110)
T 2dm3_A 9 RPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKM----LVRENGVHSLIIEPVTSRDAGIYTCI 84 (110)
T ss_dssp CCEEEECCCEEEEESSSCBCCEEEEECSSCCEEECBBSSSBCCCCSSEEE----EECTTSCEEEEESSCCGGGCSBBCEE
T ss_pred CCcEEeCCCcEEEeCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCceEE----EEecCCeEEEEEeeCCcccCEEEEEE
Confidence 789999999999999999999999999899999999999887632 2111 12233456799999999999999999
Q ss_pred EeCCCCceeeeeeEEEEcCCCCC
Q psy14540 81 ATNRVGSQTHSADMRVYDAPGQP 103 (291)
Q Consensus 81 ~~~~~~~~~~~~~l~v~~~~~~~ 103 (291)
+.|..|.....+.|.|...+..|
T Consensus 85 a~n~~g~~~~~~~l~V~~~p~~P 107 (110)
T 2dm3_A 85 ATNRAGQNSFSLELVVAAKESGP 107 (110)
T ss_dssp EECSSCEEEECCEEEEECCCCSS
T ss_pred EECCCCEEEEEEEEEEeCCCCCC
Confidence 99999998889999998877544
No 311
>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A
Probab=99.68 E-value=3.6e-16 Score=114.91 Aligned_cols=146 Identities=16% Similarity=0.241 Sum_probs=91.0
Q ss_pred ceeecCCCceEEEEEeeCCC-CCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCc
Q psy14540 115 SIKVHSGDRAGVQCLVTKGD-PPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHS 193 (291)
Q Consensus 115 ~~~~~~g~~~~l~C~~~~~~-p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~ 193 (291)
.+.+.+|+.++|.|.+ .+. |.+.+.|++....- ...........+. ... ..+ ....
T Consensus 9 ~~~v~~G~~v~L~C~~-~~~~~~~~v~W~k~~~~~--~~~~~~~~~~~~~--~~~-----------------~~~-~~~r 65 (218)
T 3s96_B 9 SASFSLGASAKLTCTL-NSQHSTYTIEWYQQQPLK--PPKYVMELKKDGS--HST-----------------GDG-IPDR 65 (218)
T ss_dssp EEEEETTSCEEEEEEE-CGGGTTCCEEEEEECTTS--CCEEEEEECTTSC--EEE-----------------CSS-CCTT
T ss_pred cEEECCCCcEEEEEEC-CCCCCCcEEEEEEECCCC--CeEEEEEEcccCc--ccc-----------------CCC-cccc
Confidence 5788899999999999 577 88999999843110 0000000000000 000 000 0111
Q ss_pred eEEEEeccceEEEEeeeecCCCeeEEEEeeeCCc-----cCCceeEEEEe----cCCCCCCCCccc-ccCCceEEEEEEe
Q psy14540 194 SNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVA-----SDNHSSNLRVN----VPPHIGPFTFGE-LMEGVRTQVACVV 263 (291)
Q Consensus 194 ~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~-----~~~~~~~l~v~----~~p~~~~~~~~~-~~~g~~v~l~C~~ 263 (291)
+.+.......+|.|.++..+|+|.|.|.+.+..+ .......|.|. .+|.+....... ...|+.++|.|.+
T Consensus 66 ~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~~~~~~~~~~~~~~~~v~L~C~~ 145 (218)
T 3s96_B 66 FSGSSSGADRYLSISNIQPEDEAIYICGVGDTIKEQFVYVFGGGTKVTVLGQPKSTPTLTVFPPSSEELKENKATLVCLI 145 (218)
T ss_dssp EEEEEETTEEEEEESSCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCCBCCEEEEECCCHHHHHTTEEEEEEEE
T ss_pred eEEecCCceEEEEEccCCcccCEEEEEEEecCCCCceeEEEcCcEEEEEecCCCCCceEEeeCCCcccccCCcEEEEEEE
Confidence 2222233467799999999999999999988765 34555677777 345554433322 5677999999999
Q ss_pred ecCCCCc-eEEEEECCEEccC
Q psy14540 264 QSGDLPL-SLQWYKNGLAISQ 283 (291)
Q Consensus 264 ~~~~p~~-~v~W~~~~~~l~~ 283 (291)
.++.|++ .|.|++||.++..
T Consensus 146 ~g~~p~~~~v~W~k~g~~l~~ 166 (218)
T 3s96_B 146 SNFSPSGVTVAWKANGTPITQ 166 (218)
T ss_dssp EEEBSSCCEEEEEETTEEC--
T ss_pred CcccCCCeEEEEEECCEECcC
Confidence 4446766 9999999999865
No 312
>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}
Probab=99.68 E-value=7.7e-16 Score=110.83 Aligned_cols=146 Identities=16% Similarity=0.250 Sum_probs=89.8
Q ss_pred CcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCC
Q psy14540 113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNH 192 (291)
Q Consensus 113 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~ 192 (291)
+..+.+.+|+.++|.|.+..+.+.+.+.|++++..+.. +.........+... +. .| ..
T Consensus 5 p~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~i~~-----~~~~~~~~~~~~~~-----~~-~~-----------~~ 62 (193)
T 2if7_A 5 PLMVNGILGESVTLPLEFPAGEKVNFITWLFNETSLAF-----IVPHETKSPEIHVT-----NP-KQ-----------GK 62 (193)
T ss_dssp CEEEEEETTSCEEECCCCCCCSCCCEEEEEETTEEEEE-----EECCSSSCCEEEEC-----CH-HH-----------HT
T ss_pred CeEEEEEecCeEEEeccCCCcccccEEEEEECCEEEEE-----EecccCCCCceeec-----Cc-cc-----------cc
Confidence 44577889999999999843355679999998754310 00000000000000 00 00 00
Q ss_pred ceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCC---CCCCCCcccccCCc-eEEEEEEeecCCC
Q psy14540 193 SSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPP---HIGPFTFGELMEGV-RTQVACVVQSGDL 268 (291)
Q Consensus 193 ~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p---~~~~~~~~~~~~g~-~v~l~C~~~~~~p 268 (291)
.+. +. .+.+|.|.+++.+|+|.|+|.+.+..+.....+.|.|..++ .+.... .....|. .++|+|.+.++.|
T Consensus 63 R~~--~~-~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~L~V~~~~~~p~i~~~~-~~~~~g~~~v~L~C~~~g~~p 138 (193)
T 2if7_A 63 RLN--FT-QSYSLQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHS-QLFQNMTCELHLTCSVEDADD 138 (193)
T ss_dssp TEE--EC-TTCCEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEECCCEEEEEEECC-C---CSSEEEEEEEEEESCCT
T ss_pred cEE--EC-CCeEEEECCCCcccCceEEEEEEecCCCeEEEEEEEEEccCCCCeEecCc-eeecCCCceEEEEEEEecCCC
Confidence 001 11 25679999999999999999999888665567788887653 222221 1134465 8999999944466
Q ss_pred CceEEEEECCEEccCC
Q psy14540 269 PLSLQWYKNGLAISQP 284 (291)
Q Consensus 269 ~~~v~W~~~~~~l~~~ 284 (291)
.|.|.|+++|..+..+
T Consensus 139 ~p~i~W~~~g~~l~~~ 154 (193)
T 2if7_A 139 NVSFRWEALGNTLSSQ 154 (193)
T ss_dssp TCEEEEEETTEEEESS
T ss_pred ceEEEEEeCCEEcCCC
Confidence 8999999999987544
No 313
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex, alternative splicing, ATP-binding, calcium, calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Probab=99.68 E-value=2.7e-16 Score=101.93 Aligned_cols=93 Identities=24% Similarity=0.463 Sum_probs=77.2
Q ss_pred CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecC-CCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEE
Q psy14540 2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLA-GDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCT 80 (291)
Q Consensus 2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~ 80 (291)
||.|...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+. ..++... .....+.|.|.+++.+|+|.|+|.
T Consensus 13 ~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~-----~~~~~~~L~i~~~~~~D~G~Y~C~ 87 (107)
T 3irg_B 13 PPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFP-----ADGAEHGLLLTAALPTDAGVYVCR 87 (107)
T ss_dssp EEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEECC-----EETTEEEEEESSCCGGGCEEEEEE
T ss_pred CCeeEcCCccEEEeCCCeEEEEEEEeecCCCEEEEEECCeECCCCCcEEEE-----eCCCEEEEEEccCCHHhCEEEEEE
Confidence 6888888989999999999999999988888999999998887 3333322 223446799999999999999999
Q ss_pred EeCCCCceeeeeeEEEEcC
Q psy14540 81 ATNRVGSQTHSADMRVYDA 99 (291)
Q Consensus 81 ~~~~~~~~~~~~~l~v~~~ 99 (291)
+.|..|.....+.|.|..+
T Consensus 88 a~n~~g~~~~~~~l~V~~~ 106 (107)
T 3irg_B 88 ARNAAGEAYAAAAVTVLEP 106 (107)
T ss_dssp EEETTEEEEEEEEEEEEC-
T ss_pred EEcCCCcEEEEEEEEEEcC
Confidence 9998888888888888754
No 314
>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A
Probab=99.68 E-value=3.4e-16 Score=112.01 Aligned_cols=129 Identities=17% Similarity=0.277 Sum_probs=73.4
Q ss_pred eecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEee-CCCCCceeEEEEEEecCCCCCCceE
Q psy14540 117 KVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIAT-LSTGHSGNYTCVASNTVASDNHSSN 195 (291)
Q Consensus 117 ~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~-~~~~d~g~y~C~~~~~~~~~~~~~~ 195 (291)
...+|+.+.|.|.+ .+ +. .+.|+++|..+.... ...|.|.+ +..+|+|.|+|.|.|..|.....+.
T Consensus 10 v~~~G~~v~L~C~~-~~-~~-~i~W~k~g~~l~~~~----------~~~L~I~~~~~~~D~G~Y~C~a~n~~g~~~~~~~ 76 (186)
T 1jbj_A 10 VSISGTSVELTCPL-DS-DE-NLKWEKNGQELPQKH----------DKHLVLQDFSEVEDSGYYVCYTPASNKNTYLYLK 76 (186)
T ss_dssp EEEETTEEEEECSS-CC-CT-TCEEEETTEEECSCC----------CSEEEEESCCTTTSCEEEEEECSSCCCCCCEEEC
T ss_pred EEeCCcEEEEEEeC-CC-CC-ceEEEECCEECCCCC----------CCEEEECCCCccccCEEEEEEEEeCCCcEEEEEE
Confidence 34679999999998 45 43 499999999886531 22477777 7777777777776666554222221
Q ss_pred EEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCCCCCCCCc--------ccccCCceEEEEEEeecCC
Q psy14540 196 LRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGPFTF--------GELMEGVRTQVACVVQSGD 267 (291)
Q Consensus 196 ~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p~~~~~~~--------~~~~~g~~v~l~C~~~~~~ 267 (291)
+.+.... ..... ......+.+..+|.+..... ..+.+|+.+.|.|.+
T Consensus 77 ~~v~~~~--------~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~l~C~~---- 131 (186)
T 1jbj_A 77 ARVGSAD--------DAKKD-------------AAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLTCGL---- 131 (186)
T ss_dssp CCCCSCC--------CCCCC-------------CCCCCCCSCCSSSTTCCSCCCCSSCCEECCCSSSCEEEEECSS----
T ss_pred EEEeccc--------ccccc-------------cccccccccCCccccccccccccccccceecCCCCeEEEEeeC----
Confidence 1111000 00000 00000000111122211111 125599999999986
Q ss_pred CCceEEEEECCEEccC
Q psy14540 268 LPLSLQWYKNGLAISQ 283 (291)
Q Consensus 268 p~~~v~W~~~~~~l~~ 283 (291)
|.|.|.|+|||.+|..
T Consensus 132 p~p~i~W~k~g~~i~~ 147 (186)
T 1jbj_A 132 TDKTIKWLKDGSIISP 147 (186)
T ss_dssp SCSCEEEEETTEECCC
T ss_pred CCCeEEEEECCEECcc
Confidence 7889999999999863
No 315
>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O
Probab=99.68 E-value=2.2e-16 Score=101.76 Aligned_cols=90 Identities=26% Similarity=0.530 Sum_probs=64.9
Q ss_pred cCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCC
Q psy14540 111 SNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASD 190 (291)
Q Consensus 111 ~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~ 190 (291)
..+....+.+|+.+.|.|.+ .|.|.+.+.|+++|..+....++.+...+
T Consensus 18 ~~p~~~~v~~G~~~~l~C~~-~G~P~p~v~W~k~g~~l~~~~~~~~~~~~------------------------------ 66 (107)
T 3knb_B 18 RFPRPVRVVSGAEAELKCVV-LGEPPPVVVWEKGGQQLAASERLSFPADG------------------------------ 66 (107)
T ss_dssp ECCCCEEEETTSCEEEEEEE-EEESCCEEEEEETTEECCCCSSEECCEET------------------------------
T ss_pred eCCCcEEEeCCCcEEEEEEE-EEecCCEEEEEECcccccceeeEEEeecC------------------------------
Confidence 34456788999999999999 69999999999999998766554433221
Q ss_pred CCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCC
Q psy14540 191 NHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPP 241 (291)
Q Consensus 191 ~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p 241 (291)
...+|.|.++..+|+|.|+|.|.|..|....++.|.|..+|
T Consensus 67 ----------~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~pP 107 (107)
T 3knb_B 67 ----------AEHGLLLTAALPTDAGVYVCRARNAAGEAYAAAAVTVLEPP 107 (107)
T ss_dssp ----------TEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC--
T ss_pred ----------ceEEEEEecCChhhCEEEEEEEEECCCEEEEEEEEEEEcCC
Confidence 12356666677777777777777777777777777776654
No 316
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A
Probab=99.67 E-value=2.2e-16 Score=99.44 Aligned_cols=89 Identities=19% Similarity=0.335 Sum_probs=74.0
Q ss_pred CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECC--eecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEE
Q psy14540 2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDG--YPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQC 79 (291)
Q Consensus 2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C 79 (291)
||.|...+....+.+|+.+.|.|.+.+.|.+.+.|++++ ..+..... . ........|.|.+++.+|+|.|+|
T Consensus 2 ~P~i~~~~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~~~~~~~~~~~~-~-----~~~~~~~~L~i~~~~~~D~G~Y~C 75 (93)
T 1wit_A 2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELL-V-----DAKSSTTSIFFPSAKRADSGNYKL 75 (93)
T ss_dssp CCEECCCCCEEEECTTBCCEEEEEEECCSSCEEEEECSTTTCBCSTTSE-E-----EEETTEEEEECTTBCGGGCEEEEE
T ss_pred CCeEEcCCCceEEeCCCEEEEEEEEEEcCCCEEEEEECCCCcccCCcEE-E-----EecCCEEEEEECCCChhcCEEEEE
Confidence 789988888899999999999999999999999999999 77763321 1 111334679999999999999999
Q ss_pred EEeCCCCceeeeeeEEE
Q psy14540 80 TATNRVGSQTHSADMRV 96 (291)
Q Consensus 80 ~~~~~~~~~~~~~~l~v 96 (291)
.+.|..|.....+.|.|
T Consensus 76 ~a~N~~G~~~~~~~l~V 92 (93)
T 1wit_A 76 KVKNELGEDEAIFEVIV 92 (93)
T ss_dssp EEEETTEEEEEEEEEEE
T ss_pred EEEcCCCeEEEEEEEEE
Confidence 99999998877777766
No 317
>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...
Probab=99.67 E-value=5.6e-16 Score=113.39 Aligned_cols=145 Identities=12% Similarity=0.178 Sum_probs=89.1
Q ss_pred CcceeecCCCceEEEEEeeCCCC---CceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCC
Q psy14540 113 SRSIKVHSGDRAGVQCLVTKGDP---PLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVAS 189 (291)
Q Consensus 113 ~~~~~~~~g~~~~l~C~~~~~~p---~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 189 (291)
+....+.+|+.++|.|.+ .+.| .+.+.|++++... .. .+.+... +.+ ..+
T Consensus 7 p~~~~v~~G~~v~L~C~~-~~~~~~~~~~v~W~~~~~~~----~~----------~~~~~~~-----~~~------~~~- 59 (212)
T 1q0x_L 7 ESALTTSPGETVTLTCRS-STGAVTTSNYANWVQEKPDH----LF----------TGLIGGT-----NNR------APG- 59 (212)
T ss_dssp CSEEEECTTCCEEEEEEE-SSSCCCGGGCCEEEEEETTT----EE----------EEEEETT-----TEE------CTT-
T ss_pred CCeEeecCCCCEEEEEEe-cccccCCCCeEEEEEeCCCC----Cc----------eEEEEcC-----ccc------CCc-
Confidence 455778899999999999 5665 4789999853100 00 0000000 000 000
Q ss_pred CCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCcc-CCceeEEEEe----cCCCCCCCCccc-ccCCceEEEEEEe
Q psy14540 190 DNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVAS-DNHSSNLRVN----VPPHIGPFTFGE-LMEGVRTQVACVV 263 (291)
Q Consensus 190 ~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~-~~~~~~l~v~----~~p~~~~~~~~~-~~~g~~v~l~C~~ 263 (291)
....+.+........|.|.++..+|+|.|.|.+.+..+. ......|.|. .+|.+...+... +..|+.++|.|.+
T Consensus 60 ~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~ 139 (212)
T 1q0x_L 60 VPARFSGSLIGDKAALTITGAQTEDEAIYFCALWSNNKLVFGGGTKLTVLGQPKSSPTVTLFPPSSEELSTAKATLVCTI 139 (212)
T ss_dssp CCTTEEEEEETTEEEEEESSCCGGGCEEEEEEEECSSCEEECCCEEEEECCSCCBCCEEEEECCCHHHHTTTEEEEEEEE
T ss_pred ccccEEEEeeCCEEEEEECCCCccCCEEEEEEEecCchhhcCCCeEEEEecCCCCCCeeEEeCCCHHHccCCcEEEEEEE
Confidence 011122222233567999999999999999999887642 2334456663 355554433322 5579999999999
Q ss_pred ecCCCCc-eEEEEECCEEccCC
Q psy14540 264 QSGDLPL-SLQWYKNGLAISQP 284 (291)
Q Consensus 264 ~~~~p~~-~v~W~~~~~~l~~~ 284 (291)
.+.+|++ .|.|+|||+.+..+
T Consensus 140 ~g~~p~~~~v~W~k~g~~l~~~ 161 (212)
T 1q0x_L 140 TDFYPGVVTVDWKVDGTPVTAG 161 (212)
T ss_dssp EEEBSSCCEEEEEETTEEECTT
T ss_pred EEEeCCCeEEEEEECCEeCCCC
Confidence 4445553 99999999988654
No 318
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Probab=99.67 E-value=2.6e-16 Score=116.68 Aligned_cols=153 Identities=16% Similarity=0.313 Sum_probs=97.5
Q ss_pred CCcceeecCCCceEEEEEeeCCCCC-ceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCC
Q psy14540 112 NSRSIKVHSGDRAGVQCLVTKGDPP-LTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASD 190 (291)
Q Consensus 112 ~~~~~~~~~g~~~~l~C~~~~~~p~-~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~ 190 (291)
.+....+.+|+.+.|.|.+ .+.+. +.+.|++++...... ..... .. ....|.-.+....+..
T Consensus 6 ~p~~~~v~~G~~v~L~C~~-~~~~~~~~v~W~~~~~~~~~~-~~~~~---------~~------~~~~~~~r~~~~~~~~ 68 (231)
T 2pet_A 6 VPPLVEVMRGKSVILDCTP-TGTHDHYMLEWFLTDRSGARP-RLASA---------EM------QGSELQVTMHDTRGRS 68 (231)
T ss_dssp CCSEEEEETTCCEEECCCC-BSCCSEEEEEEEEECTTCCCC-EEEEE---------EE------ETTEEEEEECCCSCCS
T ss_pred CCCcEEEEcCCCEEEeccc-CCCCCceEEEEEEeCCCceeE-EEEec---------cc------cCCccccccccccccc
Confidence 3456788999999999998 57774 899999865432100 00000 00 0001111111000000
Q ss_pred CCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCC-ccCCceeEEEEecCCCCCC---CCccc-ccCCceE-EEEEEee
Q psy14540 191 NHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTV-ASDNHSSNLRVNVPPHIGP---FTFGE-LMEGVRT-QVACVVQ 264 (291)
Q Consensus 191 ~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~-~~~~~~~~l~v~~~p~~~~---~~~~~-~~~g~~v-~l~C~~~ 264 (291)
. .. .+. ....|.|.++..+|+|.|+|.+.+.. +.....+.|.|..+|.... .+... +.+|+.+ +|.|.+.
T Consensus 69 ~-~~--~~~-~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~g~~~~~l~C~~~ 144 (231)
T 2pet_A 69 P-PY--QLD-SQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTLSVMEDSAQEIATCNSR 144 (231)
T ss_dssp S-CC--EEC-TTCCEEESSCCGGGCEEEEEEEECGGGCEEEEEEEEEEEBCCCCCEEEECCSSCCTTCCSEEEEEEEEEE
T ss_pred c-cc--ccC-CCceEEEcccCcccCceEEEEEEecCCCceEEEEEEEEEecCCCcEEecCCcceeecCCCceEEEEEEeE
Confidence 0 00 011 12348999999999999999999887 7777888888887754322 22222 6789988 9999997
Q ss_pred cCCCCceEEEEECCEEccCCe
Q psy14540 265 SGDLPLSLQWYKNGLAISQPD 285 (291)
Q Consensus 265 ~~~p~~~v~W~~~~~~l~~~~ 285 (291)
.+.|.+.+.|+++|.++....
T Consensus 145 ~~~p~p~i~W~~~~~~~~~~~ 165 (231)
T 2pet_A 145 NGNPAPKITWYRNGQRLEVPV 165 (231)
T ss_dssp EEBSCCEEEEEETTEECCCCS
T ss_pred CcccCCEEEEEECCccCcccc
Confidence 788999999999999986554
No 319
>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.67 E-value=7.7e-16 Score=110.40 Aligned_cols=121 Identities=13% Similarity=0.169 Sum_probs=82.2
Q ss_pred eecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEE
Q psy14540 117 KVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNL 196 (291)
Q Consensus 117 ~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~ 196 (291)
.+.+|+.++|.|.+ .+ +.+.+.|+|++..+...... ....
T Consensus 14 ~v~~G~~v~L~C~~-~~-~~~~~~w~k~g~~~~~~~~~--~~~~------------------------------------ 53 (188)
T 1oll_A 14 MVPKEKQVTICCQG-NY-GAVEYQLHFEGSLFAVDRPK--PPER------------------------------------ 53 (188)
T ss_dssp EEETTCCEEEEEEC-CT-TCCEEEEEETTEEEEEECCS--SCTT------------------------------------
T ss_pred cCCCCCCEEEEEec-CC-CCCEEEEEECCCcccccccc--cCCC------------------------------------
Confidence 67899999999998 44 45789999998765311000 0000
Q ss_pred EEeccceEEEEeeeecCCCeeEEEEeeeCCc--cCCceeEEEEec---CCCCCCCCcccccCCceEEEEEEeecCCCCce
Q psy14540 197 RVNEYTSSLSIATLSTGHSGNYTCVASNTVA--SDNHSSNLRVNV---PPHIGPFTFGELMEGVRTQVACVVQSGDLPLS 271 (291)
Q Consensus 197 ~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~--~~~~~~~l~v~~---~p~~~~~~~~~~~~g~~v~l~C~~~~~~p~~~ 271 (291)
.....|.|.++..+|+|.|+|.+.|..+ ..+..+.|.|.. +|.+...+...+.+|+.++|.|.+ .+. ++.
T Consensus 54 ---~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~s~~~~l~V~~~~~~p~i~~~p~~~v~~G~~v~L~C~~-~~~-~~~ 128 (188)
T 1oll_A 54 ---INKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGEKVTFYCRL-DTA-TSM 128 (188)
T ss_dssp ---CCEEEEEESSCCGGGCEEEEEEEEETTEECCCCCCEEEEEESCSCCCEEEEESCSEEETTCEEEEEEEC-SSS-CSE
T ss_pred ---cceeEEEeCcCCcccCeEEEEEecCCCCCCCCCCceEEEecccCCCCeEEECCCCccccCCEEEEEEEc-CCC-CCE
Confidence 0134567777777788888888877543 335667777764 455544444448899999999998 554 568
Q ss_pred EEEEECCEEcc
Q psy14540 272 LQWYKNGLAIS 282 (291)
Q Consensus 272 v~W~~~~~~l~ 282 (291)
+.|+|+|..+.
T Consensus 129 ~~w~k~g~~~~ 139 (188)
T 1oll_A 129 FLLLKEGRSSH 139 (188)
T ss_dssp EEEEEESSSCE
T ss_pred EEEEECCcccc
Confidence 99999997664
No 320
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X
Probab=99.67 E-value=5.5e-16 Score=113.50 Aligned_cols=147 Identities=22% Similarity=0.332 Sum_probs=95.5
Q ss_pred cceeecCCCceEEEEEeeCCCC----CceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCC
Q psy14540 114 RSIKVHSGDRAGVQCLVTKGDP----PLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVAS 189 (291)
Q Consensus 114 ~~~~~~~g~~~~l~C~~~~~~p----~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 189 (291)
..+.+.+|+.+.|.|.+ .+.+ .+.+.|++++..............+. ..+........+.+.....
T Consensus 8 ~~v~v~~G~~v~L~C~~-~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~r~~~~~~----- 77 (214)
T 3jz7_A 8 QRIEKAKGETAYLPCKF-TLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGD----KIYDNYYPDLKGRVHFTSN----- 77 (214)
T ss_dssp EEEEEETTSCEEECCBC-CCCTTCCSCCEEEEEEEESSSSCCSEEEEEEETT----EEECCCCGGGTTTEEESCS-----
T ss_pred ceEEEecCCCEEEEEEE-ecCCCCCCcEEEEEEecCCCCCCCceEEEEEeCC----eEccccCCccccceEEecc-----
Confidence 45778899999999998 5555 46999998543221111111000000 0000000000011100000
Q ss_pred CCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCCCCCCCCccc-ccCCceEEEEEEeecCCC
Q psy14540 190 DNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGPFTFGE-LMEGVRTQVACVVQSGDL 268 (291)
Q Consensus 190 ~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~-~~~g~~v~l~C~~~~~~p 268 (291)
.......+|.|.++..+|+|.|+|.+.+..+.....+.|.|..+|.+....... +.+|+.++|.|.+..+.|
T Consensus 78 -------~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~~g~p 150 (214)
T 3jz7_A 78 -------DVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSGTRCFVDGSEEIGNDFKLKCEPKEGSL 150 (214)
T ss_dssp -------CGGGTBCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCBSCEEEEESCCBTTCCEEEEEECSBCCS
T ss_pred -------CccCCcccEEEccCChhhCeEEEEEEEeCCCccccEEEEEEEcCCCCceeeeecceecCCcEEEEecCCCCCC
Confidence 011235679999999999999999999988888888999999888776554443 889999999999977899
Q ss_pred CceEEEEEC
Q psy14540 269 PLSLQWYKN 277 (291)
Q Consensus 269 ~~~v~W~~~ 277 (291)
.+.+.|+++
T Consensus 151 ~~~v~W~~~ 159 (214)
T 3jz7_A 151 PLQFEWQKL 159 (214)
T ss_dssp SCEEEEEEC
T ss_pred CCEEEEEEC
Confidence 999999994
No 321
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Probab=99.67 E-value=1e-16 Score=114.62 Aligned_cols=138 Identities=13% Similarity=0.127 Sum_probs=87.3
Q ss_pred ceeecCCCceEEEEEeeCCCCCceeEEeECCEeccC--CCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCC
Q psy14540 115 SIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILS--DAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNH 192 (291)
Q Consensus 115 ~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~--~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~ 192 (291)
.+.+.+|+.++|.|.+ .+.|.+.+.|++++..+.. ....... ......+.+
T Consensus 4 ~v~~~~G~~v~L~C~~-~~~~~~~i~W~~~~~~~~~~~~~~~~~~-------------~~~~~~~r~------------- 56 (184)
T 2ny1_B 4 VVLGKKGDTVELTCTA-SQKKSIQFHWKNSNQIKILGNQGSFLTK-------------GPSKLNDRA------------- 56 (184)
T ss_dssp EEEEETTSCEEECCBC-SSSSCCCEEEEETTCCEEEEEETTEEEE-------------CSCTTGGGE-------------
T ss_pred cEEEeCCCCEEEEEEE-cCCCceEEEEEeCCccceEEecCceEec-------------CChhhCCcc-------------
Confidence 3578899999999998 5888899999998753211 0000000 000000000
Q ss_pred ceEEEE---eccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCCCCCCCCcccccCCceEEEEEEeecCCCC
Q psy14540 193 SSNLRV---NEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGPFTFGELMEGVRTQVACVVQSGDLP 269 (291)
Q Consensus 193 ~~~~~~---~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~g~~v~l~C~~~~~~p~ 269 (291)
.+.. .....+|.|.++..+|+|.|+|.+.+..+ .+.|.|...+ ..+...+.+|+.++|.|.+ .+.|.
T Consensus 57 --~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~----~~~l~V~~~~---~~~~~~v~~g~~~~l~C~~-~~~p~ 126 (184)
T 2ny1_B 57 --DSRRSLWDQGNFPLIIKNLKIEDSDTYICEVEDQKE----EVQLLVFGLT---ANSDTHLLQGQSLTLTLES-PPGSS 126 (184)
T ss_dssp --ECCGGGGGGTBCCEEECSCCGGGCEEEEEEETTEEE----EEEEEEEEEE---ESSCSEEETTCCEEEEEEC-CTTCC
T ss_pred --ccccccccCCeEEEEEecCCHHHCEEEEEEEEcCCC----cEEEEEEEec---CCCCceeecCCCEEEEEEc-CCCCC
Confidence 0000 11244588888888899999998887654 4455554321 2222347899999999999 77899
Q ss_pred ceEEEEECCEEccCCeeeEe
Q psy14540 270 LSLQWYKNGLAISQPDISIT 289 (291)
Q Consensus 270 ~~v~W~~~~~~l~~~~~~~~ 289 (291)
+.+.|+++|..+......+.
T Consensus 127 ~~v~W~~~~~~~~~~~~~L~ 146 (184)
T 2ny1_B 127 PSVQCRSPRGKNIQGGKTLS 146 (184)
T ss_dssp CEEEEECTTSCEEEESSEEE
T ss_pred CEEEEEeCCCccccCceEEE
Confidence 99999999876644433333
No 322
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=7.8e-16 Score=101.53 Aligned_cols=94 Identities=20% Similarity=0.303 Sum_probs=75.9
Q ss_pred CCcceee---cceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEE
Q psy14540 2 HPQLIYK---FIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQ 78 (291)
Q Consensus 2 ~p~~~~~---~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~ 78 (291)
+|.|... +....+.+|+.+.|.|.+.+.|.+.+.|++++..+...+... ......+.|.|.+++..|+|.|+
T Consensus 21 ~P~i~~~~~~~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~-----~~~~~~~~L~i~~~~~~D~G~Y~ 95 (118)
T 2e7c_A 21 PPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLDTSRVHV-----RTSDFDTVFFVRQAARSDSGEYE 95 (118)
T ss_dssp EEEECCCTTTSSCEEEESSSCEEEEEEEEEESCCEEEEEETTEECCCSSCEE-----EECSSEEEEEESSCCTTTCEEEE
T ss_pred CCeEecCcccCCCEEEECCCEEEEEEEEccCCCCEEEEEECCEECCCCcEEE-----EECCCeEEEEECCCChhcCEEEE
Confidence 4556442 456789999999999999999999999999999887433332 12344567999999999999999
Q ss_pred EEEeCCCCceeeeeeEEEEcCC
Q psy14540 79 CTATNRVGSQTHSADMRVYDAP 100 (291)
Q Consensus 79 C~~~~~~~~~~~~~~l~v~~~~ 100 (291)
|.+.|..|.....+.|.|...|
T Consensus 96 C~a~N~~G~~~~~~~l~V~~~P 117 (118)
T 2e7c_A 96 LSVQIENMKDTATIRIRVVEKA 117 (118)
T ss_dssp EEEECSSCEECCEEEEEEECCC
T ss_pred EEEEeCCCeEEEEEEEEEEcCC
Confidence 9999999988888888888654
No 323
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}
Probab=99.67 E-value=2.5e-16 Score=118.25 Aligned_cols=156 Identities=18% Similarity=0.290 Sum_probs=93.3
Q ss_pred CcceeecCCCceEEEEEeeCC---CCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCC--CceeEEEEEEecC
Q psy14540 113 SRSIKVHSGDRAGVQCLVTKG---DPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTG--HSGNYTCVASNTV 187 (291)
Q Consensus 113 ~~~~~~~~g~~~~l~C~~~~~---~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~--d~g~y~C~~~~~~ 187 (291)
+..+.+.+|+.++|.|.+ .+ .|.+.+.|++++.... ...+... .....+.... ....+. .. .
T Consensus 9 ~~~v~v~~G~~v~L~C~~-~~~~~~~~~~v~W~~~~~~~~---~~~~~~~-----~~~~~~~~~~~~~~~~~~-~~---~ 75 (250)
T 2fbo_J 9 HTEVEVHAGGTVELPCSY-QLANDTQPPVISWLKGASPDR---STKVFKG-----NYNWQGEGLGFVESDSYK-ES---F 75 (250)
T ss_dssp CSEEEECTTSCEEECCEE-EECSCCSCCEEEEEEEEETTE---EEEEEEE-----EECCCBTTBCCCTTSEEE-EE---C
T ss_pred CCceEEecCCeEEEEEEe-EcCCCCCceEEEEEeCCCCCc---cEEEEee-----cccccccccccccccccc-cc---C
Confidence 345788899999999998 44 7788999999875421 0000000 0000000000 000000 00 0
Q ss_pred CCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccC-----CceeEEEEecC---CCCCCCCcc--cccCCceE
Q psy14540 188 ASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASD-----NHSSNLRVNVP---PHIGPFTFG--ELMEGVRT 257 (291)
Q Consensus 188 ~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~-----~~~~~l~v~~~---p~~~~~~~~--~~~~g~~v 257 (291)
........+ .......|.|.++..+|+|.|+|.+.+..+.. ...+.|.|..+ |.+...... .+.+|+.+
T Consensus 76 ~~~~~r~~~-~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~v~~g~~v 154 (250)
T 2fbo_J 76 GDFLGRASV-ANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDI 154 (250)
T ss_dssp GGGTTTEEC-SCTTSCCEEECSCCGGGCEEEEEEEECTTCCSGGGEEEEEEEEEETTTSCCSCCEECCCSEEECCTTCCE
T ss_pred CCcCceEEe-ccCCcceEEEeeCChhhCeEEEEEeccCccCCcccccceeEEEEEeccCCCCeEEEecCceEEecCCCcE
Confidence 000000000 00124579999999999999999999877543 34777888764 333332222 27789999
Q ss_pred EEEEEeecCCCCceEEEEECCEEccC
Q psy14540 258 QVACVVQSGDLPLSLQWYKNGLAISQ 283 (291)
Q Consensus 258 ~l~C~~~~~~p~~~v~W~~~~~~l~~ 283 (291)
+|.|.+ .+.|.|.|.|+|++..+..
T Consensus 155 ~L~C~~-~g~p~p~v~W~k~~~~~~~ 179 (250)
T 2fbo_J 155 TMTCPC-TDCANANVTWYTGPTFFEN 179 (250)
T ss_dssp EECCCE-ESCTTCEEEEEEEEECSSC
T ss_pred EEEEEe-cCCCCCeeEEEeCCCcccc
Confidence 999999 8888889999999988754
No 324
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}
Probab=99.67 E-value=5.7e-16 Score=98.85 Aligned_cols=92 Identities=24% Similarity=0.475 Sum_probs=76.6
Q ss_pred CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecC-CCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEE
Q psy14540 2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLA-GDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCT 80 (291)
Q Consensus 2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~ 80 (291)
+|.|...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+. ..++.. ......+.|.|.+++.+|+|.|+|.
T Consensus 6 ~P~i~~~~~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~-----~~~~~~~~L~i~~~~~~d~G~Y~C~ 80 (99)
T 3puc_A 6 KPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKL-----SEDKGGFFLEIHKTDTSDSGLYTCT 80 (99)
T ss_dssp EEEEEECCCCEEEESSSCEEEEEEEEEESCCEEEEEETTEECCSSSSEEE-----EEETTEEEEEECSCCGGGCEEEEEE
T ss_pred CCEEEecCccEEEeCCCcEEEEEEEEecCCCEEEEEECCEECcCCCCEEE-----EEeCCEEEEEECCCCcccCEEEEEE
Confidence 6888889999999999999999999988889999999999887 333332 1223446799999999999999999
Q ss_pred EeCCCCceeeeeeEEEEc
Q psy14540 81 ATNRVGSQTHSADMRVYD 98 (291)
Q Consensus 81 ~~~~~~~~~~~~~l~v~~ 98 (291)
+.|..|.....+.|.|..
T Consensus 81 a~n~~g~~~~~~~l~V~~ 98 (99)
T 3puc_A 81 VKNSAGSVSSSCKLTIKA 98 (99)
T ss_dssp EEETTEEEEEEEEEEEEC
T ss_pred EEeCCCcEeEEEEEEEEe
Confidence 999888888888777753
No 325
>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...
Probab=99.66 E-value=5.2e-16 Score=113.89 Aligned_cols=146 Identities=16% Similarity=0.217 Sum_probs=88.4
Q ss_pred CcceeecCCCceEEEEEeeCCCC-CceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCC
Q psy14540 113 SRSIKVHSGDRAGVQCLVTKGDP-PLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDN 191 (291)
Q Consensus 113 ~~~~~~~~g~~~~l~C~~~~~~p-~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~ 191 (291)
+....+.+|+.++|.|.+..+.+ .+.+.|++++.... .. +.+...... ..+ ..
T Consensus 7 p~~~~v~~G~~v~L~C~v~~~~~~~~~v~W~k~~~~~~--~~------------~~~~~~~~~-----------~~~-~~ 60 (216)
T 2xzc_L 7 PPSVSAAPGQKVTISCSGSSSNIGNNYVSWYQQLPGTA--PK------------LLIYDNNKR-----------PSG-IP 60 (216)
T ss_dssp CSEEEECTTCCEEEEEECCTTTGGGSCCEEEEECTTSC--CE------------EEEBTTTBC-----------CTT-CC
T ss_pred CCcEEecCCCeEEEEEEeecCCCCCCeEEEEEeCCCCC--cE------------EEEEecCcc-----------CCC-CC
Confidence 34578889999999999534443 57999998542100 00 000000000 000 00
Q ss_pred CceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCc--cCCceeEEEEe---cCCCCCCCCcc-cccCCceEEEEEEeec
Q psy14540 192 HSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVA--SDNHSSNLRVN---VPPHIGPFTFG-ELMEGVRTQVACVVQS 265 (291)
Q Consensus 192 ~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~--~~~~~~~l~v~---~~p~~~~~~~~-~~~~g~~v~l~C~~~~ 265 (291)
..+.+........|.|.++..+|+|.|.|.+.|..+ .......|.|. .+|.+...... ....|+.++|.|.+.+
T Consensus 61 ~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g 140 (216)
T 2xzc_L 61 DRFSGSKSGTSATLGITGLQTGDEADYYCGTWDSSLNPVFGGGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNN 140 (216)
T ss_dssp TTEEEEEETTEEEEEECSCCGGGCEEEEEEEECTTSCEEEBCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEE
T ss_pred CceEEeccCCEEEEEECCCCcccCEEEEEEEEeCCCcceECCCEEEEEcCCCCCCceEEeCCChhhccCCcEEEEEEEEe
Confidence 111222223356789999999999999999998764 22334456665 34555443222 2346899999999944
Q ss_pred CCCCc-eEEEEECCEEccCC
Q psy14540 266 GDLPL-SLQWYKNGLAISQP 284 (291)
Q Consensus 266 ~~p~~-~v~W~~~~~~l~~~ 284 (291)
+.|++ .|.|+|||.++..+
T Consensus 141 ~~P~~~~v~W~k~g~~~~~~ 160 (216)
T 2xzc_L 141 FYPREAKVQWKVDNALQSGN 160 (216)
T ss_dssp EBSSCCEEEEEETTEECCSS
T ss_pred EcCCceEEEEEECCeecCCC
Confidence 46664 99999999998665
No 326
>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A
Probab=99.66 E-value=1.5e-15 Score=95.21 Aligned_cols=87 Identities=17% Similarity=0.258 Sum_probs=68.9
Q ss_pred CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecC-CCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEE
Q psy14540 2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLA-GDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCT 80 (291)
Q Consensus 2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~ 80 (291)
+|.|...+.+..+.+|++++|.|.+.+ +.+.+.|+|+|..+. ..++.+ .......+|.|.+++.+|+|.|+|.
T Consensus 5 ~~~~~~~~~~~~v~~G~~v~l~C~v~~-~~~~v~W~k~g~~i~~~~~~~i-----~~~g~~~~L~I~~v~~~D~G~Y~C~ 78 (93)
T 1waa_A 5 LIEVEKPLYGVEVFVGETAHFEIELSE-PDVHGQWKLKGQPLAASPDCEI-----IEDGKKHILILHNCQLGMTGEVSFQ 78 (93)
T ss_dssp CCCEEECCCCEEEETTSCEEEEEEESS-SSCCCEEEETTEECCCBTTEEE-----EEETTEEEEEECSCCGGGCEEEEEE
T ss_pred CcEeeccCcceEEeCCCCEEEEEEECC-CCCeEEEEECCEECcCCCCEEE-----EEECCEEEEEECCCChhhCEEEEEE
Confidence 688999999999999999999999976 457899999999987 334332 1223446799999999999999999
Q ss_pred EeCCCCceeeeeeEEEEc
Q psy14540 81 ATNRVGSQTHSADMRVYD 98 (291)
Q Consensus 81 ~~~~~~~~~~~~~l~v~~ 98 (291)
+.| ...+..|.|.+
T Consensus 79 a~n----~~~sa~L~V~~ 92 (93)
T 1waa_A 79 AAN----TKSAANLKVKE 92 (93)
T ss_dssp ETT----EEEEEEEEEEC
T ss_pred ECC----CcEEEEEEEEc
Confidence 975 34556666653
No 327
>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2
Probab=99.66 E-value=2.3e-16 Score=115.48 Aligned_cols=143 Identities=18% Similarity=0.246 Sum_probs=88.9
Q ss_pred CcceeecCCCceEEEEEeeCCCCCceeEEeECC--EeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCC
Q psy14540 113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNG--LPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASD 190 (291)
Q Consensus 113 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~--~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~ 190 (291)
+....+.+|+.++|.|.+ .+.|.+.+.|++++ ..+. +.+...... . ...
T Consensus 6 p~~~~v~~G~~v~L~C~~-~~~~~~~v~W~k~~~g~~~~----------------~~~~~~~~~-----------~-~~~ 56 (212)
T 1nfd_E 6 PSSASVTVGETVKITCSG-DQLPKNFAYWFQQKSDKNIL----------------LLIYMDNKR-----------P-SGI 56 (212)
T ss_dssp CSEEEEETTSCCCEEEEE-TTGGGSCCEEEEECTTCCEE----------------EEEBTTTBC-----------C-TTS
T ss_pred CCeEEEeCCCcEEEEEec-CCCCCCeEEEEEECCCCCcE----------------EEEEecccc-----------C-CCc
Confidence 445788899999999997 67777889999853 2110 000000000 0 000
Q ss_pred CCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCc---cCCceeEEEEe----cCCCCCCCCccc-ccCCceEEEEEE
Q psy14540 191 NHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVA---SDNHSSNLRVN----VPPHIGPFTFGE-LMEGVRTQVACV 262 (291)
Q Consensus 191 ~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~---~~~~~~~l~v~----~~p~~~~~~~~~-~~~g~~v~l~C~ 262 (291)
...+.+........|.|.++..+|+|.|.|.+.|... .......|.|. .+|.+....... +.+|+.++|.|.
T Consensus 57 ~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~~~~g~~v~L~C~ 136 (212)
T 1nfd_E 57 PERFSGSTSGTTATLTISGAQPEDEAAYYCLSSYGDNNDLVFGSGTQLTVLRGPKSSPKVTVFPPSPEELRTNKATLVCL 136 (212)
T ss_dssp CTTEEEEEETTEEEEEETTCCGGGCSEEEEEEEETTTTEEEECCCEEEEEECCCCBCCEEECCCCCHHHHHTTEECCCEE
T ss_pred cccEEEEeeCCEEEEEECcCCcccCEEEEEEEEcccCcccccCCceEEEEccCCCCCCEEEeeCCchHhccCCceEEEEE
Confidence 1112222223356788999999999999999986321 12333456663 345555433332 568999999999
Q ss_pred eecCCCC-ceEEEEECCEEccCC
Q psy14540 263 VQSGDLP-LSLQWYKNGLAISQP 284 (291)
Q Consensus 263 ~~~~~p~-~~v~W~~~~~~l~~~ 284 (291)
+.+..|+ +.|.|++||.++...
T Consensus 137 ~~g~~p~~~~v~W~k~g~~~~~~ 159 (212)
T 1nfd_E 137 VNDFYPGSATVTWKANGATINDG 159 (212)
T ss_dssp EEEEBSSCCEEEEEETTEEECSS
T ss_pred EEeeECCccEEEEEECCeEcCCC
Confidence 9444465 899999999998654
No 328
>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A
Probab=99.66 E-value=2.9e-16 Score=114.44 Aligned_cols=130 Identities=12% Similarity=0.220 Sum_probs=85.9
Q ss_pred ecCCCceEEEEEeeCCC---C-CceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCc
Q psy14540 118 VHSGDRAGVQCLVTKGD---P-PLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHS 193 (291)
Q Consensus 118 ~~~g~~~~l~C~~~~~~---p-~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~ 193 (291)
+.+|+.++|.|.+. +. | ...+.|++++..+..... . . ......|.|.-
T Consensus 15 v~~G~~v~L~C~~~-g~~~~p~~~~v~W~k~~~~~~~~~~-~------------~--~~~~~~~~~~~------------ 66 (207)
T 2vol_A 15 LTITLTPKVTCVVV-DISKDDPEVQFSWFVDDVEVHTAQT-K------------P--REEQFNSTFRS------------ 66 (207)
T ss_dssp HSTTSCCEEEEEEE-EECTTCCCCEEEEEETTEEECCCEE-E------------C--CCEETTTEEEE------------
T ss_pred hccCCceEEEEEEe-CcccCCCceEEEEEECCcccccccc-C------------C--CcCcCCCcEEE------------
Confidence 77999999999995 55 3 358999999976642110 0 0 00011233321
Q ss_pred eEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCc--eeEE--EEecCCCCCCCCccc-ccCCceEEEEEEeecCCC
Q psy14540 194 SNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNH--SSNL--RVNVPPHIGPFTFGE-LMEGVRTQVACVVQSGDL 268 (291)
Q Consensus 194 ~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~--~~~l--~v~~~p~~~~~~~~~-~~~g~~v~l~C~~~~~~p 268 (291)
...|.|.++..+|+|.|+|.|.|..+.... .+.+ .+..+|.+...+... ...|+.++|.|.+.+.+|
T Consensus 67 --------~~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~g~~P 138 (207)
T 2vol_A 67 --------VSELPIMHQDWLNGKEFKCRVNSAAFPAPIEKTISKTKGRPKAPQVYTLPPPKEQMAKDKVSLTCMITDFFP 138 (207)
T ss_dssp --------EEEEECCHHHHHTTCCEEEEEECTTCSSCEEEEECCCCCCCBCCEEEEECCCTGGGSSSEEEEEEEEEEEBS
T ss_pred --------EEEEEEehhHcCCCCEEEEEEEccCCCCceEEEeccCCCCCcCCeEEEeCCCHHHhcCCceEEEEEEeeEEC
Confidence 246888888899999999999988765322 3322 344566655443332 346999999999944456
Q ss_pred C-ceEEEEECCEEccC
Q psy14540 269 P-LSLQWYKNGLAISQ 283 (291)
Q Consensus 269 ~-~~v~W~~~~~~l~~ 283 (291)
+ +.|.|+|||.++.+
T Consensus 139 ~~~~v~W~k~g~~l~~ 154 (207)
T 2vol_A 139 EDITVEWESNGQPAEN 154 (207)
T ss_dssp SCCEEEEEETTEECSC
T ss_pred CCCEEEEEECCEeccC
Confidence 5 49999999998854
No 329
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Probab=99.66 E-value=9.8e-17 Score=116.32 Aligned_cols=129 Identities=19% Similarity=0.314 Sum_probs=81.2
Q ss_pred CCcceeecCCCceEEEEEeeCCCCC-ceeEEeECCEeccCC--CceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCC
Q psy14540 112 NSRSIKVHSGDRAGVQCLVTKGDPP-LTISWLKNGLPILSD--AEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVA 188 (291)
Q Consensus 112 ~~~~~~~~~g~~~~l~C~~~~~~p~-~~~~W~~~~~~~~~~--~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~ 188 (291)
.+....+.+|+.+.|.|....+.|. +.+.|++++..+... .+.....
T Consensus 14 ~~~~~~v~~G~~v~L~C~~~~~~p~~~~v~W~~~~~~~~~~~~~~~~~~~------------------------------ 63 (201)
T 3s97_C 14 ERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQ------------------------------ 63 (201)
T ss_dssp CCCCEEEETTCCEEECCCCCSEESSCCEEEEEESSTTCBCCCSSSEEECT------------------------------
T ss_pred CCceEEEECCCCEEEeccccccCCCceEEEEEECCceeeeeeCCCeEEEc------------------------------
Confidence 3455788999999999993268888 999999998776421 1111111
Q ss_pred CCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCC---ceeEEEEe-------cCCCCCCCCcc-cccCCceE
Q psy14540 189 SDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDN---HSSNLRVN-------VPPHIGPFTFG-ELMEGVRT 257 (291)
Q Consensus 189 ~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~---~~~~l~v~-------~~p~~~~~~~~-~~~~g~~v 257 (291)
....|.|.++..+|+|.|+|.+.+..+... ..+.+.+. .+|.+...... .+.+|+.+
T Consensus 64 ------------~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~ 131 (201)
T 3s97_C 64 ------------TNGNLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNV 131 (201)
T ss_dssp ------------TTCCEEESSCCGGGCEEEEEEEEEGGGTEEEECCCEEEEEECCSSCCCEEEEEEEECCCEEEETTCCE
T ss_pred ------------CCCeEEECcCCcccCeEEEEEEEecCCCcchhhcccceeeccccccCCCCCceEecCCceEEecCCcE
Confidence 123355555555566666666655432211 12222221 12223222222 27899999
Q ss_pred EEEEEeecCCCCceEEEEECCEEccC
Q psy14540 258 QVACVVQSGDLPLSLQWYKNGLAISQ 283 (291)
Q Consensus 258 ~l~C~~~~~~p~~~v~W~~~~~~l~~ 283 (291)
+|.|.+ .+.|.+.+.|++++..+..
T Consensus 132 ~l~C~~-~g~p~p~v~W~~~~~~~~~ 156 (201)
T 3s97_C 132 TLECFA-LGNPVPDIRWRKVLEPMPS 156 (201)
T ss_dssp EEEEEE-EEESCCEEEEEETTBCCCT
T ss_pred EEEEEc-cCCCCCceEEEeCCCcCCC
Confidence 999999 8889999999999998764
No 330
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=5.5e-16 Score=102.27 Aligned_cols=92 Identities=29% Similarity=0.501 Sum_probs=77.2
Q ss_pred CCCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCC--CeeEeceEEeeccceEEEEEEeecCCCCCeEEE
Q psy14540 1 SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAG--DRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQ 78 (291)
Q Consensus 1 s~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~ 78 (291)
.||.|...+....+.+|+++.|.|.+.+.|.+.+.|++++..+.. .++.. ... .+|.|.+++.+|+|.|+
T Consensus 7 ~pP~i~~~p~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~g~~~~~~~~~~~~-----~~~---~~L~i~~v~~~D~G~Y~ 78 (118)
T 2eo9_A 7 GPPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQ-----LEN---GVLQIRYAKLGDTGRYT 78 (118)
T ss_dssp CSCCCSBCCCCEEEETTCEEEEECBCCCSSCCEEEEEESSSBCCTTSTTEEE-----EET---TEEEEESCCGGGCCCEE
T ss_pred CCCEEEcCCCCEEEcCCCeEEEEEEEEecCCCEEEEEECCEECcCCCCeEEE-----ccC---CEEEEccCCcCCCEEEE
Confidence 378999999999999999999999999989999999999988762 22221 111 25999999999999999
Q ss_pred EEEeCCCCceeeeeeEEEEcCC
Q psy14540 79 CTATNRVGSQTHSADMRVYDAP 100 (291)
Q Consensus 79 C~~~~~~~~~~~~~~l~v~~~~ 100 (291)
|.+.|..|.....+.|.|...+
T Consensus 79 C~a~n~~g~~~~~~~l~V~~~~ 100 (118)
T 2eo9_A 79 CIASTPSGEATWSAYIEVQEFG 100 (118)
T ss_dssp EEEECSSCEEEEECCEEEECCS
T ss_pred EEEEcCCCcEEEEEEEEEEeCC
Confidence 9999999988888899998765
No 331
>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A
Probab=99.66 E-value=1.2e-15 Score=110.61 Aligned_cols=124 Identities=15% Similarity=0.161 Sum_probs=83.5
Q ss_pred eeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceE
Q psy14540 116 IKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSN 195 (291)
Q Consensus 116 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~ 195 (291)
..+.+|+.++|.|.+ . .+.+.+.|+|+|..+............
T Consensus 17 ~~v~~G~~v~L~C~~-~-~~~~~~~w~k~g~~~~~~~~~~~~~~~----------------------------------- 59 (201)
T 1nkr_A 17 PLVKSEETVILQCWS-D-VMFEHFLLHREGMFNDTLRLIGEHHDG----------------------------------- 59 (201)
T ss_dssp SEEETTCCEEEEEEE-S-SCCSEEEEEEESSSCEEEEEECEEETT-----------------------------------
T ss_pred CccCCCCcEEEEEec-c-CCCCEEEEEECCCcCCcceeeeecCCC-----------------------------------
Confidence 567899999999998 3 467899999998655321000000000
Q ss_pred EEEeccceEEEEeeeecCCCeeEEEEeeeCC-----ccCCceeEEEEec---CCCCCCCCcccccCCceEEEEEEeecCC
Q psy14540 196 LRVNEYTSSLSIATLSTGHSGNYTCVASNTV-----ASDNHSSNLRVNV---PPHIGPFTFGELMEGVRTQVACVVQSGD 267 (291)
Q Consensus 196 ~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~-----~~~~~~~~l~v~~---~p~~~~~~~~~~~~g~~v~l~C~~~~~~ 267 (291)
.....|.|.++..+|+|.|+|.+.+.. ...+..+.|.|.. +|.+...+...+.+|+.++|.|.+ .+
T Consensus 60 ----~~~~~l~I~~v~~~D~G~Y~C~a~~~~~~~~~~~~s~~~~l~V~~~~~~p~i~~~p~~~v~~G~~v~L~C~~-~~- 133 (201)
T 1nkr_A 60 ----VSKANFSISRMTQDLAGTYRCYGSVTHSPYQVSAPSDPLDIVIIGLYEKPSLSAQPGPTVLAGENVTLSCSS-RS- 133 (201)
T ss_dssp ----EEEEEEEESSCCGGGCEEEEEEEEBTTBTTCCCCCCCCEEEEEECSSCCCEEEEESCSEECTTCEEEEEEEE-SS-
T ss_pred ----CceEEEEeccCCcccCeEEEEeEecCCCCccccCCCCCEEEEeeccCCCCceecCCCCccCCCCeEEEEEeC-CC-
Confidence 013457777777888888888886542 2345566777764 345544444448999999999999 55
Q ss_pred CCceEEEEECCEEcc
Q psy14540 268 LPLSLQWYKNGLAIS 282 (291)
Q Consensus 268 p~~~v~W~~~~~~l~ 282 (291)
+.+.+.|+|+|..+.
T Consensus 134 ~~~~~~w~k~g~~~~ 148 (201)
T 1nkr_A 134 SYDMYHLSREGEAHE 148 (201)
T ss_dssp CCSEEEEEETTCSSC
T ss_pred CCceEEEEECCcccC
Confidence 567899999998774
No 332
>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain, integrin, allosteric mobility, cell adhesi immune system; HET: NAG; 2.10A {Homo sapiens}
Probab=99.66 E-value=7.3e-15 Score=104.03 Aligned_cols=131 Identities=11% Similarity=0.089 Sum_probs=90.5
Q ss_pred CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEE
Q psy14540 2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTA 81 (291)
Q Consensus 2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~ 81 (291)
+-.+.+.|....|.+|+++.|+|.........+.|.-.-. .... ..+.....+.|.+++ +|.+.|.|.+
T Consensus 2 ~f~v~v~P~~~~V~~G~Sv~l~Cs~~c~~p~~~~~~t~l~-----~~~~-----~~g~~~~~~~ls~vs-~d~~~~~C~~ 70 (196)
T 3bn3_B 2 PFWADLQPRVAFVERGGSLWLNCSTNCPRPERGGLETSLR-----RNGT-----QRGLRWLARQLVDIR-EPETQPVCFF 70 (196)
T ss_dssp CSCEEEESSEEEEETTEEEEEEEEECCSSCSEEEEECSSE-----EEEE-----EEETTEEEEEEEEEC-SSEECCEEEE
T ss_pred CcEEEEcCCCcEEcCCCeEEEEEeCCCCCCCccEEEEccC-----CeeE-----ccccCceEEEEEEEc-cCCCceEEEE
Confidence 3456778888899999999999999643232577753211 0000 111222347899998 8888899998
Q ss_pred eCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCce--eEEeECCEecc
Q psy14540 82 TNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLT--ISWLKNGLPIL 149 (291)
Q Consensus 82 ~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~--~~W~~~~~~~~ 149 (291)
........+.+.+.|+..|..+ . +.. ....+.+|+.++|.|.+.+++|... |.|+++++.+.
T Consensus 71 ~c~~~~~~~~v~l~Vy~~P~~v---~-i~~--~~~~~~~G~~~tL~C~v~~~~P~~~L~i~wlkg~~~l~ 134 (196)
T 3bn3_B 71 RCARRTLQARGLIRTFQRPDRV---E-LMP--LPPWQPVGENFTLSCRVPGAGPRASLTLTLLRGAQELI 134 (196)
T ss_dssp EETTEEEEEECEEEEEBCCCCC---E-ECC--CCSSEETTSEEEEEEEETTCBCGGGEEEEEEETTEEEE
T ss_pred ECCCCceEEEEEEEEecCCCcC---E-Ecc--CCccccCCCcEEEEEEeCCccCCCCcEEEEEeCCEEee
Confidence 7655567888899999877443 1 111 1123679999999999977788655 89999998874
No 333
>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*
Probab=99.66 E-value=1.2e-15 Score=113.62 Aligned_cols=145 Identities=17% Similarity=0.278 Sum_probs=91.1
Q ss_pred CcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCC
Q psy14540 113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNH 192 (291)
Q Consensus 113 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~ 192 (291)
+....+.+|+.++|.|.+ .+.|.+.+.|+++.... .........+ . ......+
T Consensus 31 p~~~~v~~G~~v~L~C~~-~~~~~~~v~W~k~~~~~--~~~~~~~~~~--~-------~~~~~~~--------------- 83 (237)
T 3sob_L 31 PSSLSASVGDRVTITCRA-SQDVSTAVAWYQQKPGK--APKLLIYSAS--F-------LYSGVPS--------------- 83 (237)
T ss_dssp CSEEEEETTCCEEEEEEE-SSCCTTCEEEEEECTTS--CCEEEEETTT--E-------ECTTCCT---------------
T ss_pred CCeEEEeCCCcEEEEEec-CCCCCceEEEEEECCCC--CCEEEEEecc--c-------cCCCCCC---------------
Confidence 345778899999999999 67788999999843110 0000000000 0 0000011
Q ss_pred ceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCcc-CCceeEEEEe---cCCCCCCCCccc-ccCCceEEEEEEeecCC
Q psy14540 193 SSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVAS-DNHSSNLRVN---VPPHIGPFTFGE-LMEGVRTQVACVVQSGD 267 (291)
Q Consensus 193 ~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~-~~~~~~l~v~---~~p~~~~~~~~~-~~~g~~v~l~C~~~~~~ 267 (291)
.+.+.......+|.|.++..+|+|.|.|.+.+..+. ......+.|. .+|.+....... +..|+.++|+|.+.++.
T Consensus 84 r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~v~l~C~~~~~~ 163 (237)
T 3sob_L 84 RFSGSGSGTDFTLTISSLQPEDFATYYCQQSYTTPPTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFY 163 (237)
T ss_dssp TEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEECCCBCCEEEEECCCHHHHHHTEEEEEEEEEEEB
T ss_pred cEEEEcCCCEEEEEECCCChhhCeEEEEeeccCCceEEcCcEEEEEecCCCCCceEEeCCChhhccCCceEEEEEEcccC
Confidence 112222334668999999999999999999876632 2334456663 345554433332 55688999999995546
Q ss_pred C-CceEEEEECCEEccCC
Q psy14540 268 L-PLSLQWYKNGLAISQP 284 (291)
Q Consensus 268 p-~~~v~W~~~~~~l~~~ 284 (291)
| .+.|.|++||..+..+
T Consensus 164 p~~~~v~W~k~g~~~~~~ 181 (237)
T 3sob_L 164 PREAKVQWKVDNALQSGN 181 (237)
T ss_dssp SSCCEEEEEETTEECCSS
T ss_pred CCceEEEEEECCCCCCCc
Confidence 6 6899999999998753
No 334
>3u1s_H FAB PGT145 heavy chain; IGG, broadly neutralizing antibody, HIV-1 GP120, immune SYST; HET: TYS; 2.30A {Homo sapiens}
Probab=99.65 E-value=9.1e-16 Score=116.19 Aligned_cols=180 Identities=23% Similarity=0.382 Sum_probs=101.6
Q ss_pred ecceeeeecCCcEEEEEEecC--CCCCeeEEEEC--CeecC------C-C--eeE----eceEE--eeccceEEEEEEee
Q psy14540 8 KFIQQTLQPGPPVSLKCIATG--NPTPHISWKLD--GYPLA------G-D--RFV----MGQYM--SLHGDVISHVNISS 68 (291)
Q Consensus 8 ~~~~~~v~~g~~v~l~C~~~~--~~~~~v~W~~~--~~~~~------~-~--~~~----~~~~~--~~~~~~~~~l~i~~ 68 (291)
.+....+.+|++++|.|.+.+ .....+.|++. +.... . . ... ..+.. .......++|+|.+
T Consensus 29 q~~~~~~~~G~~v~L~C~~s~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~ 108 (267)
T 3u1s_H 29 QSGAEVKKPGSSVKVSCKASGNSFSNHDVHWVRQATGQGLEWMGWMSHEGDKTGLAQKFQGRVTITRDSGASTVYMELRG 108 (267)
T ss_dssp ECCCEEECTTCCEEEEEEEGGGGGGTSEEEEEEECTTSCCEEEEEECTTSSCEEECGGGTTTEEEEECGGGCCEEEEECS
T ss_pred eeCCEEEeCCCcEEEEEEeeCCccCCCEEEEEEECCCCCcEEEEEEeCCCCceecCcccCCcEEEEEcCCCCEEEEEECC
Confidence 344578999999999999964 33567999983 21110 0 0 000 01111 11223557899999
Q ss_pred cCCCCCeEEEEEEeC-------CC------------C------ceeeeeeEEEEcC-CCCCcccceeccCCcceeecCCC
Q psy14540 69 VRVEDSGIYQCTATN-------RV------------G------SQTHSADMRVYDA-PGQPQDVKLVTSNSRSIKVHSGD 122 (291)
Q Consensus 69 ~~~~d~G~y~C~~~~-------~~------------~------~~~~~~~l~v~~~-~~~~~~~~~~~~~~~~~~~~~g~ 122 (291)
++.+|+|.|.|.+.+ .. . .....+.+.|... +..| ...... +. ....+|+
T Consensus 109 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~l~V~~~~~~~P--~v~~~~-~~-~~~~~g~ 184 (267)
T 3u1s_H 109 LTADDTAIYYCLTGSKHRLRDYFLYNEYGPNYEEWGDYLATLDVWGHGTAVTVSSASTKGP--SVFPLA-PS-SKSTSGG 184 (267)
T ss_dssp CCGGGCEEEEEEEEEEEEEEEEEECCTTSSCEEEEEEEEEEEEEECCCEEEEECCCCCBCC--EEEEEC-CC-GGGEETT
T ss_pred CChhhCEEEEEEECcCCcccccccccccccccccccccccccceecCCeEEEecCCCCCCC--EEEEec-CC-cccCCCC
Confidence 999999999999851 10 0 0112345666532 2111 111111 11 2235789
Q ss_pred ceEEEEEeeCCCC-CceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEecc
Q psy14540 123 RAGVQCLVTKGDP-PLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEY 201 (291)
Q Consensus 123 ~~~l~C~~~~~~p-~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~ 201 (291)
.++|.|.+...+| .+.+.| ++..+...... .....+..|.|.-
T Consensus 185 ~~~l~C~~~~~~p~~~~v~W--~~~~~~~~~~~--------------~~~~~~~~g~y~~-------------------- 228 (267)
T 3u1s_H 185 TAALGCLVKDYFPEPVTVSW--NSGALTSGVHT--------------FPAVLQSSGLYSL-------------------- 228 (267)
T ss_dssp EEEEEEEEEEEBSSCCEEEE--GGGTBCTTEEE--------------CCCEECTTSCEEE--------------------
T ss_pred cEEEEEEEeEEECCCeEEEE--CCcccCCCEEe--------------CCceECCCCCEEE--------------------
Confidence 9999999966566 568999 65544321100 0000122344533
Q ss_pred ceEEEEeeeecCCCeeEEEEeeeCCcc
Q psy14540 202 TSSLSIATLSTGHSGNYTCVASNTVAS 228 (291)
Q Consensus 202 ~~~l~i~~~~~~~~g~y~C~~~~~~~~ 228 (291)
.+.|.|.....+| +.|+|.+.+....
T Consensus 229 ~s~L~i~~~~~~~-~~ytC~v~h~~~~ 254 (267)
T 3u1s_H 229 SSVVTVPSSSLGT-QTYICNVNHKPSN 254 (267)
T ss_dssp EEEEEEEGGGGGT-CCCEEEEEEGGGT
T ss_pred EEEEEECchhcCC-CEEEEEEEECCCC
Confidence 2457777777777 8888888877644
No 335
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A
Probab=99.65 E-value=3.1e-15 Score=96.93 Aligned_cols=96 Identities=10% Similarity=0.219 Sum_probs=72.9
Q ss_pred CCcceeecceeeeecCCcEEEEEEecCCCC---CeeEEEECCeecC----CCeeEeceEEee-ccceEEEEEEeecCCCC
Q psy14540 2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPT---PHISWKLDGYPLA----GDRFVMGQYMSL-HGDVISHVNISSVRVED 73 (291)
Q Consensus 2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~---~~v~W~~~~~~~~----~~~~~~~~~~~~-~~~~~~~l~i~~~~~~d 73 (291)
.|.|+..|..+.+.+|++++|.|.+.+.|. +.|.|+|++.... ..++........ .....+.|.|.+++.+|
T Consensus 4 ~p~f~~~p~~~~v~~G~~v~L~C~~~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D 83 (108)
T 3cx2_A 4 IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAF 83 (108)
T ss_dssp CCSCSBCCCCEEEETTCCEEEEEEEECC-CCSCCEEEEEETTTEEGGGGCBTTEEEEEEEETTTTEEEEEEEECSCCGGG
T ss_pred ccEEEeCCCcEEEeCCCCEEEEEEECCCccCCCcEEEEccCCcccccccCCceEEEeeEEecccccceEEEEEecCCCcc
Confidence 578999999999999999999999998887 8999999873211 112222111111 11235789999999999
Q ss_pred CeEEEEEEeCCCCceeeeeeEEEE
Q psy14540 74 SGIYQCTATNRVGSQTHSADMRVY 97 (291)
Q Consensus 74 ~G~y~C~~~~~~~~~~~~~~l~v~ 97 (291)
+|.|+|.+.|..|.....+.|.|.
T Consensus 84 ~G~Y~C~a~N~~G~~~~~~~L~V~ 107 (108)
T 3cx2_A 84 TGSYRCEVSTKDKFDCSNFNLTVH 107 (108)
T ss_dssp CEEEEEEEECSSCEEEEEEEEEEE
T ss_pred CEEEEEEEecCCCceEEEEEEEEe
Confidence 999999999999998888888875
No 336
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=4.8e-16 Score=99.19 Aligned_cols=88 Identities=28% Similarity=0.507 Sum_probs=73.3
Q ss_pred CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEE
Q psy14540 2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTA 81 (291)
Q Consensus 2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~ 81 (291)
||.|...+....+.+|+++.|.|.+.+.|.+.+.|++++..+....... ......|.|.+++.+|+|.|+|.+
T Consensus 11 ~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~-------~~~~~~L~i~~v~~~D~G~Y~C~a 83 (99)
T 2yr3_A 11 APSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTC-------EAGVAELHIQDALPEDHGTYTCLA 83 (99)
T ss_dssp EEEEEECCCCEEECTTCCEEEECEEEEESCCCCEEEESSSBCSSCCCEE-------ETTEEEEEECSCCTTCCBCEEEEE
T ss_pred CCceeecCCCCEEeCCCeEEEEEEEeeeCCCeEEEEECCEECcccceEe-------eCCeEEEEECCCChhhCEEEEEEE
Confidence 6888888888999999999999999988889999999998876332111 122467999999999999999999
Q ss_pred eCCCCceeeeeeEEE
Q psy14540 82 TNRVGSQTHSADMRV 96 (291)
Q Consensus 82 ~~~~~~~~~~~~l~v 96 (291)
.|..|.....+.|.|
T Consensus 84 ~N~~g~~~~~~~l~V 98 (99)
T 2yr3_A 84 ENALGQVSCSAWVTV 98 (99)
T ss_dssp ECSSCEEEEECCEEE
T ss_pred EECCCeEEEEEEEEE
Confidence 999988877777766
No 337
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=8.5e-16 Score=98.19 Aligned_cols=91 Identities=33% Similarity=0.607 Sum_probs=75.4
Q ss_pred CCCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCC--CeeEeceEEeeccceEEEEEEeecCCCCCeEEE
Q psy14540 1 SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAG--DRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQ 78 (291)
Q Consensus 1 s~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~ 78 (291)
.||.|...|....+.+|+.+.|.|.+.+.|.+.+.|++++..+.. .++.. ... .+|.|.+++..|+|.|+
T Consensus 7 ~~P~i~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~------~~~--~~L~i~~v~~~d~G~Y~ 78 (100)
T 2edj_A 7 GPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATI------QEQ--GTLQIKNLRISDTGTYT 78 (100)
T ss_dssp SSCEEEECCCCEEEESSSEEEECCEEECSSCCEEEEEESSSEESSSCSSCEE------CTT--CCEEEESCCTTTCCEEE
T ss_pred CCCEEEeCcCCEEEcCCCcEEEEEEEEEcCCCEEEEEECCEECCCCCCCEEE------cCC--CEEEEccCCcccCEEEE
Confidence 378899899999999999999999999999999999999987762 22211 111 25999999999999999
Q ss_pred EEEeCCCCceeeeeeEEEEcC
Q psy14540 79 CTATNRVGSQTHSADMRVYDA 99 (291)
Q Consensus 79 C~~~~~~~~~~~~~~l~v~~~ 99 (291)
|.+.|..|.....+.|.|.+.
T Consensus 79 C~a~n~~g~~~~~~~l~V~~~ 99 (100)
T 2edj_A 79 CVATSSSGETSWSAVLDVTES 99 (100)
T ss_dssp EEEECSSCCCBCCEEEEEESC
T ss_pred EEEEcCCCCEEEEEEEEEecC
Confidence 999999998888888888754
No 338
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A
Probab=99.65 E-value=4e-16 Score=100.65 Aligned_cols=91 Identities=24% Similarity=0.405 Sum_probs=76.0
Q ss_pred CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecC-CCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEE
Q psy14540 2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLA-GDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCT 80 (291)
Q Consensus 2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~ 80 (291)
+|.|...|....+.+|+++.|.|.+.+.|.+.+.|++++..+. ..++... ......+|.|.+++..|+|.|+|.
T Consensus 14 ~~~i~~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~g~~l~~~~~~~~~-----~~~~~~~L~I~~v~~~D~G~Y~C~ 88 (106)
T 1nct_A 14 AARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVT-----TTKYKSTFEISSVQASDEGNYSVV 88 (106)
T ss_dssp CCEEEECCCCEEESSSSCEECCEEEECSSCCBCCBCSSSSCCTTCSSEEEE-----ECSSEEEEEECCCCSSCCSEEEEC
T ss_pred CCEEEECCCCEEEeCCCcEEEEEEEEEcCCCEEEEEECCEECCCCCCEEEE-----ECCCEEEEEECcCCchhCEEEEEE
Confidence 6889999999999999999999999998999999999998876 3333321 122346799999999999999999
Q ss_pred EeCCCCceeeeeeEEEE
Q psy14540 81 ATNRVGSQTHSADMRVY 97 (291)
Q Consensus 81 ~~~~~~~~~~~~~l~v~ 97 (291)
+.|..|.....+.|.|.
T Consensus 89 a~N~~G~~~~~~~l~V~ 105 (106)
T 1nct_A 89 VENSEGKQEAEFTLTIQ 105 (106)
T ss_dssp CBCSSCBCCEEEEEEEC
T ss_pred EEeCCCeEEEEEEEEEE
Confidence 99999988888877764
No 339
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Probab=99.65 E-value=9.8e-16 Score=112.89 Aligned_cols=146 Identities=14% Similarity=0.167 Sum_probs=90.9
Q ss_pred CcceeecCCCceEEEEEeeCCCC-----CceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecC
Q psy14540 113 SRSIKVHSGDRAGVQCLVTKGDP-----PLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTV 187 (291)
Q Consensus 113 ~~~~~~~~g~~~~l~C~~~~~~p-----~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 187 (291)
...+.+.+|+.+.|.|.+ .+.| ...+.|++++..+.......... ........+.+.....
T Consensus 8 ~~~v~~~~G~~v~L~C~~-~~~p~~~~~~~~v~W~~~~~~v~~~~~g~~~~----------~~~~~~~~~r~~~~~~--- 73 (222)
T 3sbw_C 8 KDLYVVEYGSNMTIECKF-PVEKQLDLAALIVYWEMEDKNIIQFVHGEEDL----------KVQHSSYRQRARLLKD--- 73 (222)
T ss_dssp CSEEEEETTSCEEEEEEC-CCCSSCCTTTCEEEEEETTEEEEEEETTEECS----------SSSCGGGSSSEEECHH---
T ss_pred CccEEEEcCCcEEEEeEe-cCCCCCCCccEEEEEEECCcEEEEEeCCcccc----------ccccccccCceEEccc---
Confidence 345678899999999998 4555 34899999874331100000000 0000000000000000
Q ss_pred CCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCCCCCCCCcc-cccCCceEEEEEEeecC
Q psy14540 188 ASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGPFTFG-ELMEGVRTQVACVVQSG 266 (291)
Q Consensus 188 ~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p~~~~~~~~-~~~~g~~v~l~C~~~~~ 266 (291)
.+.....+|.|.++..+|+|.|+|.+.+ .+.....+.|.|..+|........ .+.+|+.++|.|.+ .|
T Consensus 74 ---------~~~~~~~~L~I~~v~~~D~G~Y~C~~~~-~~~~~~~~~l~V~~~~~~~~~~~~~~~~~g~~v~L~C~~-~g 142 (222)
T 3sbw_C 74 ---------QLSLGNAALQITDVKLQDAGVYRCMISY-GGADYKRITVKVNAPYNKINQRILVVDPVTSEHELTCQA-EG 142 (222)
T ss_dssp ---------HHTTTEEEEEESSCCGGGCEEEEEEEES-SSEEEEEEEEEEEBCCCCCEEEEEEEETTTTEEEEEEEE-EE
T ss_pred ---------cccCCEEEEEEcCcccccCeEEEEEEEe-CCCceeEEEEEEECCCCCCCceeeeeecCCCcEEEEEEe-cC
Confidence 0011245788999999999999999998 555566778888877654433221 36899999999999 77
Q ss_pred CCCceEEEEEC-CEEccC
Q psy14540 267 DLPLSLQWYKN-GLAISQ 283 (291)
Q Consensus 267 ~p~~~v~W~~~-~~~l~~ 283 (291)
.|.|.|.|+++ |..+..
T Consensus 143 ~P~p~i~W~~~~g~~~~~ 160 (222)
T 3sbw_C 143 YPKAEVIWTSSDHQVLSG 160 (222)
T ss_dssp BSCCEEEEEETTCCEECC
T ss_pred CCCCeEEEEECCCceecC
Confidence 99999999999 666544
No 340
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A
Probab=99.65 E-value=4.9e-16 Score=114.88 Aligned_cols=80 Identities=16% Similarity=0.215 Sum_probs=58.5
Q ss_pred ceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCCCCCCCCccc-ccCCceEEEEEEeecCCCCceEEEEECC-E
Q psy14540 202 TSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGPFTFGE-LMEGVRTQVACVVQSGDLPLSLQWYKNG-L 279 (291)
Q Consensus 202 ~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~-~~~g~~v~l~C~~~~~~p~~~v~W~~~~-~ 279 (291)
..+|.|.++..+|+|.|+|.|.|..+.....+.+.+..+ +....... +.+|+.+.|.|.+.++.|+|+|+|++++ .
T Consensus 82 ~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~v~~~~~~~--~~~~~~~~~~~~g~~v~l~c~~~g~~P~p~i~W~k~~~~ 159 (226)
T 4f80_A 82 KAALRIHNVTASDSGKYLCYFQDGDFYEKALVELKVAAL--GSDLHVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGE 159 (226)
T ss_dssp EEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEBC--CCCCEEEEEEEETTEEEEEEEEEEEBSCCEEEEECTTSC
T ss_pred eEEEEEeeCchHHCeeEEEEEECCCcEEEEEEEEeeccc--eecccceeeeccCCceeeEEEeccCCCCCEEEEEECCce
Confidence 457889999999999999999998776655555544433 22232233 8899999999999555799999999965 4
Q ss_pred EccC
Q psy14540 280 AISQ 283 (291)
Q Consensus 280 ~l~~ 283 (291)
.++.
T Consensus 160 ~~~~ 163 (226)
T 4f80_A 160 NIPT 163 (226)
T ss_dssp BCCC
T ss_pred EcCC
Confidence 4433
No 341
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*
Probab=99.65 E-value=2.8e-15 Score=109.26 Aligned_cols=141 Identities=13% Similarity=0.149 Sum_probs=93.5
Q ss_pred eeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceE
Q psy14540 116 IKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSN 195 (291)
Q Consensus 116 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~ 195 (291)
..+.+|+.++|.|.. .+.+.+.+.|++++................ . ... .....|.+..
T Consensus 9 ~~v~~G~~v~L~C~~-~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~-~---~~~--~~~~~~r~~~-------------- 67 (208)
T 3r4d_A 9 PQVAEDNNVLLLVHN-LPLALGAFAWYKGNTTAIDKEIARFVPNSN-M---NFT--GQAYSGREII-------------- 67 (208)
T ss_dssp SEEETTCCEEEEEEC-CCSSCSEEEEEESSCCCGGGEEEEEEGGGT-E---EEE--CTTCCSSEEE--------------
T ss_pred ceeecCCcEEEEEeC-CCCCceEEEeccCCCCCccceEEEEecCCC-c---ccc--CccccceeEE--------------
Confidence 567899999999996 678888999998765332211111110000 0 000 0011111110
Q ss_pred EEEeccceEEEEeeeecCCCeeEEEEeeeCC-ccCCceeEEEEecC---CCCCCCCcccccCCceEEEEEEeecCCCCce
Q psy14540 196 LRVNEYTSSLSIATLSTGHSGNYTCVASNTV-ASDNHSSNLRVNVP---PHIGPFTFGELMEGVRTQVACVVQSGDLPLS 271 (291)
Q Consensus 196 ~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~-~~~~~~~~l~v~~~---p~~~~~~~~~~~~g~~v~l~C~~~~~~p~~~ 271 (291)
..+.+|.|.++..+|+|.|+|.+.+.. +.....+.|.|..+ |.+...... +.+|+.+.|.|.+ .+.| +.
T Consensus 68 ----~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~~~~-~~~g~~v~l~C~~-~~~p-p~ 140 (208)
T 3r4d_A 68 ----YSNGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTT-VKELDSVTLTCLS-NDIG-AN 140 (208)
T ss_dssp ----CTTSCEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEEECCCCCCEEEESCSS-CCTTCCEEEEEEC-SCTT-CE
T ss_pred ----ecCCeEEEccccccCCeEEEEEEEcccCceeEEEEEEEeccCCCCCEEecCCce-EeeCCCEEEEEEC-CCCC-Cc
Confidence 124569999999999999999999885 56667778888765 333333333 8899999999999 7766 79
Q ss_pred EEEEECCEEccCC
Q psy14540 272 LQWYKNGLAISQP 284 (291)
Q Consensus 272 v~W~~~~~~l~~~ 284 (291)
+.|+++|..+...
T Consensus 141 i~W~~~g~~l~~~ 153 (208)
T 3r4d_A 141 IQWLFNSQSLQLT 153 (208)
T ss_dssp EEEEETTEECCCC
T ss_pred eEEEECCEeCCCC
Confidence 9999999998643
No 342
>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Probab=99.64 E-value=1e-15 Score=113.79 Aligned_cols=146 Identities=14% Similarity=0.209 Sum_probs=87.2
Q ss_pred CcceeecCCCceEEEEEeeCCCCCc-eeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCC
Q psy14540 113 SRSIKVHSGDRAGVQCLVTKGDPPL-TISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDN 191 (291)
Q Consensus 113 ~~~~~~~~g~~~~l~C~~~~~~p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~ 191 (291)
+....+.+|+.++|.|.+....+.+ .+.|++++.... .. +.+....... .+ ..
T Consensus 26 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~--~~------------~~~~~~~~~~-----------~~-~~ 79 (234)
T 2j6e_L 26 PPSASGTPGQRVTISCSGSSSNIGSNYVYWYQQLPGTA--PK------------LLIYRNNQRP-----------SG-VP 79 (234)
T ss_dssp CSCCCBCTTCEEEEEEECCTTTTTTSCCEEEEECSSSC--CE------------EEEBTTTBCC-----------SS-SC
T ss_pred CCcEEeeCCCcEEEEEEecCCCCCCCeEEEEEecCCCC--cE------------EEEECccccC-----------CC-cc
Confidence 4456788999999999984333344 799998632100 00 0000000000 00 00
Q ss_pred CceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCc---cCCceeEEEEe----cCCCCCCCCccc-ccCCceEEEEEEe
Q psy14540 192 HSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVA---SDNHSSNLRVN----VPPHIGPFTFGE-LMEGVRTQVACVV 263 (291)
Q Consensus 192 ~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~---~~~~~~~l~v~----~~p~~~~~~~~~-~~~g~~v~l~C~~ 263 (291)
..+.+........|.|.++..+|+|.|.|.+.+..+ .......|.|. .+|.+...+... ...|+.++|.|.+
T Consensus 80 ~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~ 159 (234)
T 2j6e_L 80 DRFSGSKSGTSASLAISGLRSEDEADYYCATWDDSLSAVIFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLI 159 (234)
T ss_dssp TTEEEEEETTEEEEEEESCCSTTCSEEEEEEEETTTTEEEECCCBCCCBCCCCCCCCCCCEECCCHHHHTTSCCCEEECC
T ss_pred ccEEEEecCCeEEEEECCCCHHHCEEEEEEEEcCCcceeEecCCEEEEEecCCCCCCcccccCCChhHhcCCceEEEEEE
Confidence 111122223356788999999999999999988765 22333455553 356665533332 4568899999999
Q ss_pred ecCCCC-ceEEEEECCEEccCC
Q psy14540 264 QSGDLP-LSLQWYKNGLAISQP 284 (291)
Q Consensus 264 ~~~~p~-~~v~W~~~~~~l~~~ 284 (291)
.+.+|+ +.|.|+|||+.+..+
T Consensus 160 ~g~~p~~~~v~W~k~g~~l~~~ 181 (234)
T 2j6e_L 160 SDFFPGAVTVAWKADGAPVKAG 181 (234)
T ss_dssp CBCSSCCCEEEEEETTEECCSS
T ss_pred EEEcCCceEEEEEECCEECCCC
Confidence 444554 499999999998654
No 343
>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*
Probab=99.64 E-value=1e-16 Score=120.27 Aligned_cols=146 Identities=15% Similarity=0.188 Sum_probs=89.8
Q ss_pred CcceeecCCCceEEEEEeeCCCCCce-----eEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecC
Q psy14540 113 SRSIKVHSGDRAGVQCLVTKGDPPLT-----ISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTV 187 (291)
Q Consensus 113 ~~~~~~~~g~~~~l~C~~~~~~p~~~-----~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 187 (291)
+....+.+|+.++|.|.+ .+.|.+. +.|++++...... . +.+.... +... .. .
T Consensus 10 p~~~~v~~G~~v~L~C~~-~g~p~~~~~~~~v~W~k~~~~~~~~--~-----------~~~~~~~----~~~~---~~-~ 67 (248)
T 3pv7_A 10 GGTQITPLNDNVTIFCNI-FYSQPLNITSMGITWFWKSLTFDKE--V-----------KVFEFFG----DHQE---AF-R 67 (248)
T ss_dssp TSEEEEETTSCEEECCEE-EESSCCCTTSCEEEEEEECSSCCCE--E-----------EEEEEES----SCEE---ES-S
T ss_pred CCCeEEeCCCCEEEeeEE-ecCCCcCCCceEEEEEEEcCCCCcc--e-----------EEEEecC----Cccc---cc-C
Confidence 345678899999999999 4666554 9999965332110 0 0000000 0000 00 0
Q ss_pred CCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCCCCCCCCcccccCCceEEEEEEeecCC
Q psy14540 188 ASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGPFTFGELMEGVRTQVACVVQSGD 267 (291)
Q Consensus 188 ~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~g~~v~l~C~~~~~~ 267 (291)
+..... .-.......+|.|.++..+|+|.|+|.+.+..+.....+.|.|..+|.+...+...+..|+.++|.|.+.++.
T Consensus 68 ~~~~~~-~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~L~V~~~P~v~~~~~~~~~~~~~~~L~C~~~g~~ 146 (248)
T 3pv7_A 68 PGAIVS-PWRLKSGDASLRLPGIQLEEAGEYRCEVVVTPLKAQGTVQLEVVASPASRLLLDQVGMKENEDKYMCESSGFY 146 (248)
T ss_dssp TTCBCC-HHHHTTTBCCEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEBCCEEEEECC--------CEEEEEEEEEB
T ss_pred CceEEE-eccCCCCcEEEEeCCCCHHHCeEEEEEEEeCCccceeEEEEEEecCCceEEecCCccccCCCcEEEEEEccEE
Confidence 000000 0001122456999999999999999999998877777888999988887776665567888999999994448
Q ss_pred CCc-eEEEEECCEEc
Q psy14540 268 LPL-SLQWYKNGLAI 281 (291)
Q Consensus 268 p~~-~v~W~~~~~~l 281 (291)
|.+ .|.|++||.++
T Consensus 147 P~pi~v~W~k~g~~l 161 (248)
T 3pv7_A 147 PEAINITWEKQTQKF 161 (248)
T ss_dssp SSCCEEEEEEECSSS
T ss_pred CCCeEEEEEECCccC
Confidence 888 99999999644
No 344
>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E
Probab=99.64 E-value=1.5e-15 Score=113.70 Aligned_cols=151 Identities=15% Similarity=0.221 Sum_probs=87.9
Q ss_pred CcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCC
Q psy14540 113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNH 192 (291)
Q Consensus 113 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~ 192 (291)
+..+.+.+|+.++|.|.+ .+.+.+.+.|++.... ............... .. ......+.|.-..
T Consensus 8 p~~~~v~~G~~v~L~C~~-~~~~~~~v~W~r~~~~--~~~~~~~~~~~~~~~--~~--~~~~~~~r~~~~~--------- 71 (246)
T 4dzb_B 8 PSWVISKSGTSVKIECRS-LDFQATTMFWYRQFPK--QSLMLMATSNEGSKA--TY--EQGVEKDKFLINH--------- 71 (246)
T ss_dssp CSEEEEETTSCEEEEEEE-SSSCCCSEEEEEECTT--SCCEEEEEECTTSCC--EE--CTTCCGGGEEEEE---------
T ss_pred CcEEEEeCCCcEEEEeEe-cCCCceEEEEEEECCC--CCcEEEEEEccCCCc--ee--cCcccCCcEEEEe---------
Confidence 345778899999999998 6778899999983210 000000000000000 00 0000112222111
Q ss_pred ceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCc----cCCceeEEEEec------CCCCCCCCcc--cccCCceEEEE
Q psy14540 193 SSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVA----SDNHSSNLRVNV------PPHIGPFTFG--ELMEGVRTQVA 260 (291)
Q Consensus 193 ~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~----~~~~~~~l~v~~------~p~~~~~~~~--~~~~g~~v~l~ 260 (291)
-.....+|.|.++..+|+|.|.|.+.+..+ .......|.|.. +|.+...... .+.+|+.++|.
T Consensus 72 -----~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~i~~~~~~~~~~~~g~~v~L~ 146 (246)
T 4dzb_B 72 -----ASLTLSTLTVTSAHPEDSSFYICSARTSGDFGEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLV 146 (246)
T ss_dssp -----EETTEEEEEECSCCGGGCEEEEEEECCSSGGGCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEE
T ss_pred -----cCCCEEEEEECCCCHHHCEEEEEEEecCCCCcceEEcCCEEEEEecCCCcccCCceEeecCCchhccCCCcEEEE
Confidence 012356799999999999999999987542 222444566653 4444332222 26679999999
Q ss_pred EEeecCCCCc-eEEEEECCEEccCC
Q psy14540 261 CVVQSGDLPL-SLQWYKNGLAISQP 284 (291)
Q Consensus 261 C~~~~~~p~~-~v~W~~~~~~l~~~ 284 (291)
|.+.+.+|++ .|.|++||..|...
T Consensus 147 C~~~g~~p~~~~v~W~k~g~~l~~~ 171 (246)
T 4dzb_B 147 CLATGFYPDHVELSWWVNGKEVHSG 171 (246)
T ss_dssp EEEEEEBSSCEEEEEEETTEEECTT
T ss_pred EEEccCcCCceEEEEEECCEECCCC
Confidence 9993334433 99999999998653
No 345
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}
Probab=99.64 E-value=1.3e-13 Score=119.04 Aligned_cols=228 Identities=14% Similarity=0.177 Sum_probs=135.7
Q ss_pred CCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCC-CeEEEEEEeCCCCceeeeeeEE
Q psy14540 17 GPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVED-SGIYQCTATNRVGSQTHSADMR 95 (291)
Q Consensus 17 g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d-~G~y~C~~~~~~~~~~~~~~l~ 95 (291)
+..+.|.|.+.+.|.+.+.|.++|..+..-.. ..+.|..+...+ ++.|.|.+.+..|..... .+.
T Consensus 91 ~g~l~v~c~~~g~P~p~i~W~k~g~~~~~~~~-------------~~~~i~~~~~~~~~l~~~~va~~~~G~~~~~-~v~ 156 (731)
T 2v5y_A 91 PGLLNVYVKVNNGPLGNPIWNISGDPTRTWNR-------------AELAISTFWPNFYQVIFEVITSGHQGYLAID-EVK 156 (731)
T ss_dssp SEEEEEEEEETTCCCCSEEEEECCCCCSSCEE-------------EEEEECCCTTSCEEEEEEEEECSSCCEEEEC-CBE
T ss_pred cceEEEEEecCCCCccceeEEEeCCcCCceeE-------------EEEEEeecCCCceEEEEEEEecCCceEEEEe-eEE
Confidence 45789999999999999999999976542111 123344332222 367777655555543221 122
Q ss_pred EEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeE-Ee--ECCEeccCCCceEEeccCCceEEEEEeeCC
Q psy14540 96 VYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTIS-WL--KNGLPILSDAEITIRSSGEYTSSLSIATLS 172 (291)
Q Consensus 96 v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~-W~--~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~ 172 (291)
+...+... ... . ..+....+.+|+.++|.|.+ .|.|.+.+. |+ ++|..+..... ...........|.|..+.
T Consensus 157 ~~~~~~~~-~p~-~-~~~~~~~v~~G~~v~l~C~~-~g~P~p~i~~W~~~~~g~~l~~~~~-~~~~~~~~~~~l~I~~~~ 231 (731)
T 2v5y_A 157 VLGHPCTR-TPH-F-LRIQNVEVNAGQFATFQCSA-IGRTVAGDRLWLQGIDVRDAPLKEI-KVTSSRRFIASFNVVNTT 231 (731)
T ss_dssp EESSCCSS-SCE-E-CCCCCEEEETTSCEEEEEEE-ESCCCTTCEEEEEESSSCCEEEEEE-EECCSSEEEEEEEECSCC
T ss_pred eeeccccc-ccc-c-ccccceEEeCCCcEEEEEEe-CCCCCCceeEEEecCCCccccccce-EEeccccceEEEEEcccc
Confidence 32221111 111 1 13345788999999999999 699988888 77 57766543221 111122235789999999
Q ss_pred CCCceeEEEEEEecCCC-CCCceEEEEec---------------------------------------------------
Q psy14540 173 TGHSGNYTCVASNTVAS-DNHSSNLRVNE--------------------------------------------------- 200 (291)
Q Consensus 173 ~~d~g~y~C~~~~~~~~-~~~~~~~~~~~--------------------------------------------------- 200 (291)
..|.|.|+|.|.|..|. ......+.+..
T Consensus 232 ~~d~g~Y~c~A~n~~G~~~s~~~~l~V~~~P~~~~~p~~~~~~~~~v~l~w~~~~~~g~~~i~~Y~v~~~~~~~~~~~~~ 311 (731)
T 2v5y_A 232 KRDAGKYRCMIRTEGGVGISNYAELVVKEPPVPIAPPQLASVGATYLWIQLNANSINGDGPIVAREVEYCTASGSWNDRQ 311 (731)
T ss_dssp TTTCEEEEEEEEETTEEEECCCEEEEEECCCCBSSCCEEEEECSSCEEEECCCSSBSSCSCCCEEEEEEEESSSSCEEEE
T ss_pred cccCeEEEEEEECCCCCcceeeEEEEEecCCCCCCCcceeccCCceEEEEeCCcccCCCCccEEEEEEEEECCCCceEEe
Confidence 99999999999999886 44433333110
Q ss_pred --cceEEEEeeeecCCCeeEEEEee--eCCccCCceeEEEEecCCCCCCC-Cccc---ccCCceEEEEEEe
Q psy14540 201 --YTSSLSIATLSTGHSGNYTCVAS--NTVASDNHSSNLRVNVPPHIGPF-TFGE---LMEGVRTQVACVV 263 (291)
Q Consensus 201 --~~~~l~i~~~~~~~~g~y~C~~~--~~~~~~~~~~~l~v~~~p~~~~~-~~~~---~~~g~~v~l~C~~ 263 (291)
....+.|.++.+.+.+.|+|.|. |..|....+..+.+...+...+. +... ......+.|....
T Consensus 312 ~~~~~~~~i~~L~p~t~Y~~~V~A~~~N~~G~s~~S~~~~~~t~~~~p~~~P~~~~~~~~~~~sv~l~W~~ 382 (731)
T 2v5y_A 312 PVDSTSYKIGHLDPDTEYEISVLLTRPGEGGTGSPGPALRTRTKCADPMRGPRKLEVVEVKSRQITIRWEP 382 (731)
T ss_dssp ECCSSEEEECSCCTTCEEEEEEEEECSSTTCSCCBCCCEEEECCCCCCSCCCEEEEEEEECSSCEEEEEEC
T ss_pred ccCcceEEEeCCCCCCEEEEEEEEEecCCCccccCCCcEEeeecCCCCCCCCceeEEEeccCCeEEEEEEC
Confidence 12455666777777788888888 88766554433444332221111 1111 2344567777765
No 346
>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus}
Probab=99.64 E-value=7.6e-16 Score=114.10 Aligned_cols=133 Identities=18% Similarity=0.320 Sum_probs=84.8
Q ss_pred cceeecCCCceEEEEEeeCCCCC-c-eeEEeECCEec-cCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCC
Q psy14540 114 RSIKVHSGDRAGVQCLVTKGDPP-L-TISWLKNGLPI-LSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASD 190 (291)
Q Consensus 114 ~~~~~~~g~~~~l~C~~~~~~p~-~-~~~W~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~ 190 (291)
....+.+|+.++|.|.+...+|. + .+.|+++|..+ ....... . ....|.|.-
T Consensus 21 ~~~~v~~G~~v~L~C~~~g~~P~~p~~v~W~~~g~~~~~~~~~~~-----------~-----~~~~g~~~~--------- 75 (231)
T 2w59_A 21 SPGELYISLDAKLRCLVVNLPSDSSLSVTWTREKSGNLRPDPMVL-----------Q-----EHFNGTYSA--------- 75 (231)
T ss_dssp CHHHHHTSCCCEEEEEEEEESCCTTCEEEEECSSSSCCCCCCCEE-----------E-----ECTTSCEEE---------
T ss_pred ChhhcccCCceEEEEEEeCccCCCCeEEEEEcCCeeccccccccc-----------e-----ECCCCcEEE---------
Confidence 34556799999999999544574 4 99999988766 2111100 0 112234421
Q ss_pred CCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEe------cCCCCCCCCcc-cccCCceEEEEEEe
Q psy14540 191 NHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVN------VPPHIGPFTFG-ELMEGVRTQVACVV 263 (291)
Q Consensus 191 ~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~------~~p~~~~~~~~-~~~~g~~v~l~C~~ 263 (291)
...|.|..+..+|+|.|+|.+.|..+.. .+.+.|. .+|.+...... ....|+.++|.|.+
T Consensus 76 -----------~s~L~I~~~~~~D~g~Y~C~~~~~~~~~--~~~~~v~~~~~~~~~P~v~v~~~~~~~~~~~~~~L~C~~ 142 (231)
T 2w59_A 76 -----------SSAVPVSTQDWLSGERFTCTVQHEELPL--PLSKSVYRNTGPTTPPLIYPFAPHPEELSLSRVTLSCLV 142 (231)
T ss_dssp -----------EEEEECCHHHHHTTCCEEEEEECTTCSS--CEEEEECCCCSCCBCCEEEEECCCGGGGGSSEEEEEEEE
T ss_pred -----------EEEEEecchhccCCCEEEEEEEcCCCCC--ceEEEEecCCCCCcCCEEEEeCCCHHHhccCceEEEEEE
Confidence 3468888888889999999999876543 3334443 24444332222 12235579999999
Q ss_pred ecCCCC-ceEEEEECCEEccCC
Q psy14540 264 QSGDLP-LSLQWYKNGLAISQP 284 (291)
Q Consensus 264 ~~~~p~-~~v~W~~~~~~l~~~ 284 (291)
.+.+|+ +.|.|+|||..|...
T Consensus 143 ~g~~P~~~~v~W~k~g~~l~~~ 164 (231)
T 2w59_A 143 RGFRPRDIEIRWLRDHRAVPAT 164 (231)
T ss_dssp EEEBSSCCEEEEEETTEECCGG
T ss_pred EeccCCCcEEEEEECCEECCCc
Confidence 444553 799999999998544
No 347
>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=1.8e-15 Score=98.04 Aligned_cols=98 Identities=15% Similarity=0.246 Sum_probs=73.5
Q ss_pred CCcceeecceeeeecCCcEEEEEEecCC---CCCeeEEEECCe-ecCC---CeeEeceEEe-eccceEEEEEEeecCCCC
Q psy14540 2 HPQLIYKFIQQTLQPGPPVSLKCIATGN---PTPHISWKLDGY-PLAG---DRFVMGQYMS-LHGDVISHVNISSVRVED 73 (291)
Q Consensus 2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~---~~~~v~W~~~~~-~~~~---~~~~~~~~~~-~~~~~~~~l~i~~~~~~d 73 (291)
++.|+..|.++.|.+|++++|.|.+.+. |.|.|.|||+.. .+.. .++.+..... ......++|+|.+++..|
T Consensus 12 ~~~f~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D 91 (118)
T 2edn_A 12 TGVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASNVYTVELHIGKVVLGD 91 (118)
T ss_dssp SSSCSBCCCCCEEETTSCEECCEEEETTTSSSCCCCEEEETTTCCCCCSTTSSCEEEEEECSSSCEEEEEEEESSCCTTT
T ss_pred cceEEECCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCCEeccCCCCccEEEeccccccccccceEEEEEeeCChhh
Confidence 3568888999999999999999999864 789999999742 1221 1222211111 111235789999999999
Q ss_pred CeEEEEEEeCCCCceeeeeeEEEEcC
Q psy14540 74 SGIYQCTATNRVGSQTHSADMRVYDA 99 (291)
Q Consensus 74 ~G~y~C~~~~~~~~~~~~~~l~v~~~ 99 (291)
+|.|+|++.+..+..+..+.|.|..+
T Consensus 92 ~G~Y~Cevsn~~g~~s~~~~L~V~~~ 117 (118)
T 2edn_A 92 RGYYRLEVKAKDTCDSCGFNIDVEAP 117 (118)
T ss_dssp CSCEEEEEECSSCEEEEEECCEEECC
T ss_pred CEEEEEEEEEcCCcEEEEEEEEEEcC
Confidence 99999999999999999999998763
No 348
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing, ATP-binding, calcium, calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Probab=99.63 E-value=1.9e-15 Score=96.59 Aligned_cols=91 Identities=23% Similarity=0.502 Sum_probs=75.4
Q ss_pred CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCC---CeeEeceEEeeccceEEEEEEeecCCCCCeEEE
Q psy14540 2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAG---DRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQ 78 (291)
Q Consensus 2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~ 78 (291)
||.|...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+.. .++.. ......++|.|.+++.+|+|.|+
T Consensus 5 pP~i~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~-----~~~~~~~~L~i~~v~~~D~G~Y~ 79 (100)
T 3irg_A 5 PPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHI-----ENTDDLTTLIIMDVQKQDGGLYT 79 (100)
T ss_dssp EEEECCCCSEEEEETTSEEEEEEEEEEESCCEEEEEETTEECCTTGGGTEEE-----EECSSEEEEEESSCCGGGCEEEE
T ss_pred CCeeecCCCcEEEcCCCcEEEEEEEEEcCCCceEEEECCEEeecCCCCEEEE-----EecCCEEEEEEeecCcccCEEEE
Confidence 68888888889999999999999999888899999999988762 22222 22334577999999999999999
Q ss_pred EEEeCCCCceeeeeeEEEE
Q psy14540 79 CTATNRVGSQTHSADMRVY 97 (291)
Q Consensus 79 C~~~~~~~~~~~~~~l~v~ 97 (291)
|.+.|..|.....+.|.|.
T Consensus 80 C~a~n~~g~~~~~~~l~V~ 98 (100)
T 3irg_A 80 LSLGNEFGSDSATVNIHIR 98 (100)
T ss_dssp EEEEETTEEEEEEEEEEEE
T ss_pred EEEEeCCCcEEEEEEEEEE
Confidence 9999988888888777775
No 349
>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L
Probab=99.63 E-value=3.2e-15 Score=112.36 Aligned_cols=145 Identities=14% Similarity=0.208 Sum_probs=89.1
Q ss_pred CcceeecCCCceEEEEEeeCCCC-----CceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecC
Q psy14540 113 SRSIKVHSGDRAGVQCLVTKGDP-----PLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTV 187 (291)
Q Consensus 113 ~~~~~~~~g~~~~l~C~~~~~~p-----~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 187 (291)
+..+.+.+|+.++|.|.+ .+.+ .+.+.|++++..- .... .+.... . ...
T Consensus 41 p~~~~v~~G~~v~L~C~~-~~~~~~~~~~~~v~W~k~~~~~--~~~~------------~~~~~~-----~------~~~ 94 (252)
T 3bkj_L 41 PLSLPVNLGEQASISCRS-SQSIVHSNGHTYLEWYLQRPGQ--SPKL------------LIYQVS-----T------RFS 94 (252)
T ss_dssp CSEEEECTTSCEEEEEEE-SSCCBCTTSCBCEEEEEECTTS--CCEE------------EEETTT-----E------ECT
T ss_pred CceEEEeCCCcEEEEEEc-CCCccccCCCCcEEEEEECCCC--CcEE------------EEEcCC-----c------ccC
Confidence 345678899999999998 5666 5899999964210 0000 000000 0 000
Q ss_pred CCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCcc-CCceeEEEEec---CCCCCCCCccc-ccCCceEEEEEE
Q psy14540 188 ASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVAS-DNHSSNLRVNV---PPHIGPFTFGE-LMEGVRTQVACV 262 (291)
Q Consensus 188 ~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~-~~~~~~l~v~~---~p~~~~~~~~~-~~~g~~v~l~C~ 262 (291)
+ ....+.+........|.|.++..+|+|.|.|.+.+..+. ......|.|.. +|.+...+... +.+|+.++|.|.
T Consensus 95 ~-~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~L~C~ 173 (252)
T 3bkj_L 95 G-VPDRFSGSGSGTDFTLRISRVEAEDLGVYYCFQASLVPLTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCF 173 (252)
T ss_dssp T-CCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSBSSCEECCCEEEEECCCCBCCEEEEECCCHHHHHHTEEEEEEE
T ss_pred C-cCCceEEEccCCEEEEEECCCCcccCEEEEEEEEcCCccEECCCEEEEEeCCCcCcEEEEeCCChhhcCCCcEEEEEE
Confidence 0 001112222233557999999999999999999886532 22334566653 45554433222 457999999999
Q ss_pred eecCCCCc-eEEEEECCEEccCC
Q psy14540 263 VQSGDLPL-SLQWYKNGLAISQP 284 (291)
Q Consensus 263 ~~~~~p~~-~v~W~~~~~~l~~~ 284 (291)
+.+.+|++ +|.|+|||..+..+
T Consensus 174 ~~g~~p~~~~v~W~k~g~~~~~~ 196 (252)
T 3bkj_L 174 LNNFYPKDINVKWKIDGSERQNG 196 (252)
T ss_dssp EEEEBSSCCEEEEEETTEEECSS
T ss_pred EeeEeCCCcEEEEEECCeecCCC
Confidence 94445654 89999999988654
No 350
>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B
Probab=99.62 E-value=1.6e-15 Score=106.77 Aligned_cols=129 Identities=13% Similarity=0.102 Sum_probs=85.1
Q ss_pred eeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceE
Q psy14540 116 IKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSN 195 (291)
Q Consensus 116 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~ 195 (291)
+.+.+|+.++|.|.+ .+ |.+.+.|++++..+... . .+ . ... .+.... .
T Consensus 5 v~~~~G~~VtL~c~~-~~-~~~~i~W~~~~~~i~~~-----~-~~--~--~~~------------------~~~~~~--R 52 (171)
T 1ccz_A 5 IYGVVYGNVTFHVPS-NV-PLKEVLWKKQKDKVAEL-----E-NS--E--FRA------------------FSSFKN--R 52 (171)
T ss_dssp EEEETTCCEEECCCC-SS-CCSCEEEEETTEEEEEE-----E-TT--E--EEE------------------CGGGTT--S
T ss_pred EEEEcCCCEEEcCCC-CC-CcceEEEEeCCcEEEEE-----c-CC--C--ccc------------------ccccCC--c
Confidence 567799999999998 44 78899999987632110 0 00 0 000 000000 1
Q ss_pred EEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCCCCCCCCcccccCCceEEEEEEeecCCCCceEEEE
Q psy14540 196 LRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGPFTFGELMEGVRTQVACVVQSGDLPLSLQWY 275 (291)
Q Consensus 196 ~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~g~~v~l~C~~~~~~p~~~v~W~ 275 (291)
+.+.....+|.|.+++..|+|.|+|.+.+..+ ...+.|.|..++..... ..... ..+|+|.+ .+.|.|.+.|+
T Consensus 53 ~~~~~~~~sL~I~~v~~~DsG~Y~C~~~n~~~--~~~~~L~V~~~~~~p~i---~~~~~-~~~L~C~~-~~~p~p~i~W~ 125 (171)
T 1ccz_A 53 VYLDTVSGSLTIYNLTSSDEDEYEMESPNITD--TMKFFLYVLEMVSKPMI---YWECS-NATLTCEV-LEGTDVELKLY 125 (171)
T ss_dssp EEECTTTCCEEECSCCGGGCEEEEEECTTCCS--CEEEEEEEECCCCCCEE---EEETT-TTEEEEEC-SSCSSCEEEEE
T ss_pred EEEeCCCCeEEECCCChhhCceEEEEEeCCCC--cEEEEEEEECcCCCCEE---EEecC-CcEEEEEe-CCCCCcEEEEE
Confidence 11223456899999999999999999998777 67788888765432111 11111 13799999 77788999999
Q ss_pred ECCEEccC
Q psy14540 276 KNGLAISQ 283 (291)
Q Consensus 276 ~~~~~l~~ 283 (291)
+||..|..
T Consensus 126 ~~~~~l~~ 133 (171)
T 1ccz_A 126 QGKEHLRS 133 (171)
T ss_dssp ETTEEEEE
T ss_pred ECCEECcC
Confidence 99998853
No 351
>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}
Probab=99.62 E-value=1.1e-15 Score=112.01 Aligned_cols=150 Identities=21% Similarity=0.264 Sum_probs=91.4
Q ss_pred CcceeecCCCceEEEEEeeCCCCCc---eeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCC
Q psy14540 113 SRSIKVHSGDRAGVQCLVTKGDPPL---TISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVAS 189 (291)
Q Consensus 113 ~~~~~~~~g~~~~l~C~~~~~~p~~---~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 189 (291)
+..+.+.+|+.++|.|.+ .+.|.+ .+.|++++..+............ . ..+ .....+.+.+...
T Consensus 6 p~~vtv~~G~~v~L~C~v-~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~--~--~~~---~~~~~~r~~~~~~----- 72 (218)
T 4frw_A 6 SDVVTVVLGQDAKLPCFY-RGDSGEQVGQVAWARVDAGEGAQELALLHSKY--G--LHV---SPAYEGRVEQPPP----- 72 (218)
T ss_dssp CSEEEEETTSCEEECCEE-CCCTTCEEEEEEEEEECSSSCEEEEEEEETTT--E--EEE---CGGGTTTEECCSS-----
T ss_pred CCeEEEEcCCCEEEEEEE-EcCCCCCccEEEEEECCCCCCceeEEEecCCC--C--eEe---CccccceEEEecc-----
Confidence 345788899999999999 566654 48999987654322111111000 0 000 0001111111000
Q ss_pred CCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCcc-CCceeEEEEecCCCCCCCCc--ccccCCceEEEEEEeecC
Q psy14540 190 DNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVAS-DNHSSNLRVNVPPHIGPFTF--GELMEGVRTQVACVVQSG 266 (291)
Q Consensus 190 ~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~-~~~~~~l~v~~~p~~~~~~~--~~~~~g~~v~l~C~~~~~ 266 (291)
.......+|.|.++..+|+|.|.|.+.+..+. ......+.+..++....... ..+..|+.+.+.|.+ .+
T Consensus 73 -------~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~-~g 144 (218)
T 4frw_A 73 -------PRNPLDGSVLLRNAVQADEGEYECRVSTFPAGSFQARLRLRVLVPPLPSLNPGPALEEGQGLTLAASCTA-EG 144 (218)
T ss_dssp -------CCCTTBCCEEESSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCCCEEEECSCEETTCCSEEEEEEEE-EE
T ss_pred -------cccCCeEEEEEeeccHHHCCceeEEEEeccCceeeeEEEEEEeeeccceeeeeeeeeeeeccccceeeec-cC
Confidence 01112457899999999999999999876533 33334444444443332222 227889999999999 89
Q ss_pred CCCceEEEEECCEEccC
Q psy14540 267 DLPLSLQWYKNGLAISQ 283 (291)
Q Consensus 267 ~p~~~v~W~~~~~~l~~ 283 (291)
.|+|.|+|++++..+..
T Consensus 145 ~p~p~i~W~~~~~~~~~ 161 (218)
T 4frw_A 145 SPAPSVTWDTEVKGTTS 161 (218)
T ss_dssp BSCCEEEEEESSCCEEE
T ss_pred CcCceEEEEECCccccc
Confidence 99999999999887753
No 352
>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=3e-15 Score=96.14 Aligned_cols=91 Identities=18% Similarity=0.373 Sum_probs=73.0
Q ss_pred CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecC-CCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEE
Q psy14540 2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLA-GDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCT 80 (291)
Q Consensus 2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~ 80 (291)
||.|...+....+.+|+++.|.|.+.+ +.+.+.|++++..+. ..++... .....+.|.|.+++.+|+|.|+|.
T Consensus 8 pp~~~~~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~~~~~~~~~~~-----~~~~~~~L~I~~v~~~D~G~Y~C~ 81 (103)
T 2edf_A 8 PAAIIKPLEDQWVAPGEDVELRCELSR-AGTPVHWLKDRKAIRKSQKYDVV-----CEGTMAMLVIRGASLKDAGEYTCE 81 (103)
T ss_dssp CCCEEECCCCEEECTTSCEEECCEESS-SSCCCCEEESSCBCCCSSSEEEE-----EETTEEEEEESSCCTTTCSEEEEE
T ss_pred CcEEEecCCccEEcCCCCEEEEEEEeC-CCCcEEEEECCEEccCCCCEEEE-----ECCCEEEEEECCCCcccCEEEEEE
Confidence 678888888999999999999999986 777899999998886 3333321 223357799999999999999999
Q ss_pred EeCCCCceeeeeeEEEEcCCCC
Q psy14540 81 ATNRVGSQTHSADMRVYDAPGQ 102 (291)
Q Consensus 81 ~~~~~~~~~~~~~l~v~~~~~~ 102 (291)
+.+ ....+.|.|...+..
T Consensus 82 a~n----~~~~~~l~V~~~p~~ 99 (103)
T 2edf_A 82 VEA----SKSTASLHVEEKASG 99 (103)
T ss_dssp CSS----CEEEEEEEECCCSSS
T ss_pred Ecc----CCcEEEEEEeCCCCC
Confidence 987 466778888776643
No 353
>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H
Probab=99.62 E-value=1.6e-15 Score=111.56 Aligned_cols=146 Identities=14% Similarity=0.260 Sum_probs=85.8
Q ss_pred cceeecCCCceEEEEEeeCCCC--CceeEEeECC--EeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCC
Q psy14540 114 RSIKVHSGDRAGVQCLVTKGDP--PLTISWLKNG--LPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVAS 189 (291)
Q Consensus 114 ~~~~~~~g~~~~l~C~~~~~~p--~~~~~W~~~~--~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 189 (291)
....+.+|+.++|.|.+ .+.+ .+.+.|++++ ..+. ........... ... .....+.|.-...
T Consensus 8 ~~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~k~~~g~~~~----~~~~~~~~~~~-~~~---~~~~~~R~~~~~~----- 73 (219)
T 1c1e_H 8 GPELKKPGETVKISCKA-SGYMFTNYGMNWVKQAPGKALK----LMGWINPYTGE-STF---ADDFKGRFAFFLE----- 73 (219)
T ss_dssp CCEEECTTCCEEEEEEE-ESSCGGGSEEEEEEECTTSCEE----EEEEECSSSCC-EEE---CGGGCSSEEEEEE-----
T ss_pred CCeEecCCCcEEEEEEE-eCcccccceEEEEEeCCCCCcE----EEEEEecCCCc-eEe---CcccCCcEEEEEe-----
Confidence 34678899999999999 4554 6789999963 2110 00000000000 000 0000111111100
Q ss_pred CCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCc----cCCceeEEEEecC----CCCCCCC-cccccCCceEEEE
Q psy14540 190 DNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVA----SDNHSSNLRVNVP----PHIGPFT-FGELMEGVRTQVA 260 (291)
Q Consensus 190 ~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~----~~~~~~~l~v~~~----p~~~~~~-~~~~~~g~~v~l~ 260 (291)
......+|.|.++..+|+|.|.|.+.+..+ .......|.|... |.+.... ...+.+|+.++|.
T Consensus 74 --------~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~ 145 (219)
T 1c1e_H 74 --------TSATTAYLQINNLKNEDMATYFCARGTTIVRAMDYWGQGTSLTVSSAKTTPPSVYPLAPGSAAQTNSMVTLG 145 (219)
T ss_dssp --------GGGTEEEEEECSCCGGGCEEEEEEEEETTTTEEEEECCCEEEEECCCCCBCCEEEEECCCSSSCCSSEEEEE
T ss_pred --------cCCCEEEEEECCCCcccCEEEEEEEeccCcccceeecCceEEEEecCCCCCCeEEEecCccccccCCeEEEE
Confidence 012246788999999999999999988752 2233456666653 4333222 2236789999999
Q ss_pred EEeecCCCCc-eEEEEECCEEc
Q psy14540 261 CVVQSGDLPL-SLQWYKNGLAI 281 (291)
Q Consensus 261 C~~~~~~p~~-~v~W~~~~~~l 281 (291)
|.+.++.|.| .|.|+++|..+
T Consensus 146 C~~~g~~P~p~~v~W~~~g~~~ 167 (219)
T 1c1e_H 146 CLVKGYFPEPVTVTWNSGSLSS 167 (219)
T ss_dssp EEEEEEBSSCCEEEEGGGTBCT
T ss_pred EEcccccCCCeEEEEEeCCccc
Confidence 9994338888 99999999865
No 354
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}
Probab=99.62 E-value=9.7e-15 Score=92.66 Aligned_cols=90 Identities=16% Similarity=0.343 Sum_probs=73.1
Q ss_pred cceeecceeeeecCCcEEEEEEecCC-CCCeeEEEECCeecC-CCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEE
Q psy14540 4 QLIYKFIQQTLQPGPPVSLKCIATGN-PTPHISWKLDGYPLA-GDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTA 81 (291)
Q Consensus 4 ~~~~~~~~~~v~~g~~v~l~C~~~~~-~~~~v~W~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~ 81 (291)
.+...|.+..+.+|+++.|.|.+.+. |.+.+.|++++..+. ..++... .....+.|.|.+++..|+|.|+|.+
T Consensus 3 ~v~~~~~~~~v~~G~~v~l~C~~~g~~p~~~v~W~~~~~~~~~~~~~~~~-----~~~~~~~L~i~~v~~~D~G~Y~C~a 77 (97)
T 2bk8_A 3 MVSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEIT-----YEDGVAILYVKDITKLDDGTYRCKV 77 (97)
T ss_dssp CEECCCCCEEECTTCCEEEEEEEESCCTTCEEEEEETTEECCSSSSEEEE-----EETTEEEEEECSCCGGGCEEEEEEE
T ss_pred ceeccCcCEEEcCCCcEEEEEEEeccCCCCEEEEEECCEECcCCCCEEEE-----EcCCeEEEEEecCChhhCeEEEEEE
Confidence 34566778899999999999999986 889999999999887 3333321 1234567999999999999999999
Q ss_pred eCCCCceeeeeeEEEEc
Q psy14540 82 TNRVGSQTHSADMRVYD 98 (291)
Q Consensus 82 ~~~~~~~~~~~~l~v~~ 98 (291)
.|..|.....+.|.|.+
T Consensus 78 ~n~~g~~~~~~~l~V~~ 94 (97)
T 2bk8_A 78 VNDYGEDSSYAELFVKG 94 (97)
T ss_dssp ECSSCEEEEEEEEEETT
T ss_pred ECCCCeEeEEEEEEEEe
Confidence 99999888888887754
No 355
>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=99.62 E-value=8.2e-15 Score=94.06 Aligned_cols=90 Identities=18% Similarity=0.221 Sum_probs=71.0
Q ss_pred CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCC-C--eeEeceEEeeccceEEEEEEeecCCCCCeEEE
Q psy14540 2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAG-D--RFVMGQYMSLHGDVISHVNISSVRVEDSGIYQ 78 (291)
Q Consensus 2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~-~--~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~ 78 (291)
|+.|...+.++.+.+|++++|.|.+.+ +.+.+.|+|++..+.. . ++.. ........|.|.+++.+|+|.|+
T Consensus 7 p~~~~~~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~l~~~~~~~~~~-----~~~~~~~~L~I~~~~~~D~G~Y~ 80 (103)
T 1x44_A 7 GIMVTKQLEDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRI-----RVEGKKHILIIEGATKADAAEYS 80 (103)
T ss_dssp SCCCSBCCCCEEEETTEEEEEEEECSS-SSCCCEEEETTEECCCSTTCSEEE-----EEETTEEEEEEEEECTTTCSEEE
T ss_pred CceeeccCCCEEEECCCCEEEEEEecC-CCCeEEEEECCEECCCCCceEEEE-----EEcCCEEEEEECCCCcccCEEEE
Confidence 345888888899999999999999976 6689999999998873 2 2222 22234567999999999999999
Q ss_pred EEEeCCCCceeeeeeEEEEcCCC
Q psy14540 79 CTATNRVGSQTHSADMRVYDAPG 101 (291)
Q Consensus 79 C~~~~~~~~~~~~~~l~v~~~~~ 101 (291)
|.+.+ ......|.|...+.
T Consensus 81 C~a~n----~~~~~~l~V~~~p~ 99 (103)
T 1x44_A 81 VMTTG----GQSSAKLSVDLKSG 99 (103)
T ss_dssp EEETT----EEEEEEEEEECCCS
T ss_pred EEECC----CcEEEEEEEeCCCC
Confidence 99975 56677888887653
No 356
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}
Probab=99.62 E-value=1.6e-15 Score=95.91 Aligned_cols=86 Identities=23% Similarity=0.388 Sum_probs=70.9
Q ss_pred CCCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecC-CCeeEeceEEeeccceEEEEEEeecCCCCCeEEEE
Q psy14540 1 SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLA-GDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQC 79 (291)
Q Consensus 1 s~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C 79 (291)
.||.|...+....+.+|+.+.|.|.+.+.| +.+.|++++..+. ..++... ...|.|.+++.+|+|.|+|
T Consensus 8 ~pp~~~~~~~~~~v~~G~~v~l~C~~~g~p-p~i~W~k~g~~~~~~~~~~~~---------~~~L~i~~~~~~D~G~Y~C 77 (95)
T 2ckn_A 8 QPWGVPVEVESLLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLVESNRTRIT---------GEEVEVRDSIPADSGLYAC 77 (95)
T ss_dssp CSCCBTTBBCCEEECTTSCEEEECCEESSC-CEEEEEBTTBCCCCCSSEEEC---------SSEEEESSCCGGGSEEEEE
T ss_pred CCCEEEcCcceEEEcCCCeEEEEEECCCCC-CceEEEECCEecCCCCCEEEe---------CCEEEECCCChHHCEEEEE
Confidence 367888889999999999999999999876 7999999998876 3333221 1359999999999999999
Q ss_pred EEeCCCCceeeeeeEEE
Q psy14540 80 TATNRVGSQTHSADMRV 96 (291)
Q Consensus 80 ~~~~~~~~~~~~~~l~v 96 (291)
.+.+..|.....+.|.|
T Consensus 78 ~a~n~~g~~~~~~~l~V 94 (95)
T 2ckn_A 78 VTSSPSGSDTTYFSVNV 94 (95)
T ss_dssp EEEETTEEEEEEEEEEE
T ss_pred EeccCCCcEEEEEEEEE
Confidence 99998888777776665
No 357
>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.61 E-value=7.9e-15 Score=109.15 Aligned_cols=121 Identities=13% Similarity=0.169 Sum_probs=82.3
Q ss_pred eecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEE
Q psy14540 117 KVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNL 196 (291)
Q Consensus 117 ~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~ 196 (291)
.+.+|+.++|.|.+ .+ +...+.|+|++..+...... ....
T Consensus 17 ~v~~G~~VtL~C~~-~~-~~~~~~w~k~g~~~~~~~~~--~~~~------------------------------------ 56 (242)
T 1p6f_A 17 MVPKEKQVTICCQG-NY-GAVEYQLHFEGSLFAVDRPK--PPER------------------------------------ 56 (242)
T ss_dssp EEETTCCEEEEEEC-CT-TCCEEEEEETTEEEEEECCS--SCTT------------------------------------
T ss_pred ccCCCCcEEEEEee-CC-CCcEEEEEECCCcccccccc--ccCC------------------------------------
Confidence 67899999999998 33 45689999998765310000 0000
Q ss_pred EEeccceEEEEeeeecCCCeeEEEEeeeCCc--cCCceeEEEEec---CCCCCCCCcccccCCceEEEEEEeecCCCCce
Q psy14540 197 RVNEYTSSLSIATLSTGHSGNYTCVASNTVA--SDNHSSNLRVNV---PPHIGPFTFGELMEGVRTQVACVVQSGDLPLS 271 (291)
Q Consensus 197 ~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~--~~~~~~~l~v~~---~p~~~~~~~~~~~~g~~v~l~C~~~~~~p~~~ 271 (291)
.....|.|.++..+|+|.|+|.+.+..+ ..+..+.|.|.. +|.+...+...+.+|+.|+|.|.+ .+. .+.
T Consensus 57 ---~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~s~~S~~~~L~V~~~~~~P~i~~~p~~~v~~G~~vtL~C~~-~~~-~~~ 131 (242)
T 1p6f_A 57 ---INKVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGEKVTFYCRL-DTA-TSM 131 (242)
T ss_dssp ---CCEEEEEECSCCGGGCEEEEEEEEETTEECCCCCCEEEEEECCSCCCEEEEESCSEEETTCEEEEEEEC-TTS-CSE
T ss_pred ---cceeEEEecCCCcccCeEEEEEEecCCccccCCcceEEEeecccCCCceEccCCCccCCCCcEEEEEec-CCC-CCE
Confidence 0134567777777888888888876542 345667777764 455554444448899999999998 554 459
Q ss_pred EEEEECCEEcc
Q psy14540 272 LQWYKNGLAIS 282 (291)
Q Consensus 272 v~W~~~~~~l~ 282 (291)
+.|+|+|..+.
T Consensus 132 ~~w~k~g~~~~ 142 (242)
T 1p6f_A 132 FLLLKEGRSSH 142 (242)
T ss_dssp EEEEECSSSCE
T ss_pred EEEEECCCccC
Confidence 99999997664
No 358
>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X
Probab=99.61 E-value=9.8e-15 Score=93.53 Aligned_cols=86 Identities=16% Similarity=0.317 Sum_probs=67.5
Q ss_pred ecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeE-eceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCceeeeee
Q psy14540 15 QPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFV-MGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQTHSAD 93 (291)
Q Consensus 15 ~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~ 93 (291)
..|+.+.|.|.+.|.|.+.++|+++|..+...... ..............|.|.+++.+|+|.|+|.+.|..|.....+.
T Consensus 14 ~~~~~~~~~c~v~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~ 93 (103)
T 1wwb_X 14 TSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQIS 93 (103)
T ss_dssp CCCCEEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEE
T ss_pred eECcEEEEEEEEEEeCCCEEEEEECCEECCCCCcEeEEEEecCCcEEEEEEEECCCCcccCEEEEEEEEeCCCcEeEEEE
Confidence 46888999999999999999999999988743221 11111112233466999999999999999999999999999998
Q ss_pred EEEEcCC
Q psy14540 94 MRVYDAP 100 (291)
Q Consensus 94 l~v~~~~ 100 (291)
|.|...|
T Consensus 94 l~V~~~P 100 (103)
T 1wwb_X 94 AHFMGWP 100 (103)
T ss_dssp ECCSCCC
T ss_pred EEECCCC
Confidence 8887665
No 359
>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=5.8e-15 Score=95.01 Aligned_cols=91 Identities=21% Similarity=0.331 Sum_probs=71.5
Q ss_pred CCcceeecce---eeeecCCcEEEEEEecCCCCCeeEEEECCeecC-CCeeEeceEEeeccceEEEEEEeecCCCCCeEE
Q psy14540 2 HPQLIYKFIQ---QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLA-GDRFVMGQYMSLHGDVISHVNISSVRVEDSGIY 77 (291)
Q Consensus 2 ~p~~~~~~~~---~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y 77 (291)
||.++..|.. ..+.+|+.++|.|.+.+.+.+ +.|++++..+. ..++.. ........|.|.+++.+|+|.|
T Consensus 7 ~P~~~~~p~~~~~~~v~~G~~v~l~C~~~~~p~~-v~W~k~g~~~~~~~~~~~-----~~~~~~~~L~I~~~~~~D~G~Y 80 (104)
T 2e6p_A 7 GPVHILSPQDKVSLTFTTSERVVLTCELSRVDFP-ATWYKDGQKVEESELLVV-----KMDGRKHRLILPEAKVQDSGEF 80 (104)
T ss_dssp SSCCCCBCCSCEEEEEESSSCEECCEECSSTTCC-CEEEETTEECCCBTTBEE-----EEETTEEEEEESSCCTTTCEEE
T ss_pred CCCEEECCCCCccEEEeCCCcEEEEEEecCCCCc-cEEeeCCEECCCCCCEEE-----EeCCCEEEEEECCCChhhCEEE
Confidence 6888888877 789999999999999988877 99999999887 333322 1223456799999999999999
Q ss_pred EEEEeCCCCceeeeeeEEEEcCCCC
Q psy14540 78 QCTATNRVGSQTHSADMRVYDAPGQ 102 (291)
Q Consensus 78 ~C~~~~~~~~~~~~~~l~v~~~~~~ 102 (291)
+|.+.+.. ..+.|.|..+|..
T Consensus 81 ~C~a~n~~----~~~~l~V~~~P~p 101 (104)
T 2e6p_A 81 ECRTEGVS----AFFGVTVQDPSGP 101 (104)
T ss_dssp EEECSSCC----CCEEEEEECCCCS
T ss_pred EEEECCce----EEEEEEEcCCCCC
Confidence 99998753 3667788776643
No 360
>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.61 E-value=1.1e-14 Score=109.33 Aligned_cols=124 Identities=15% Similarity=0.169 Sum_probs=82.1
Q ss_pred eeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceE
Q psy14540 116 IKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSN 195 (291)
Q Consensus 116 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~ 195 (291)
..+.+|++++|.|.+ .+ +.+.+.|+|+|..+.............
T Consensus 16 ~~V~~G~~VtL~C~~-~~-~~~~~~W~k~g~~~~~~~~~~~~~~~~---------------------------------- 59 (257)
T 1b6u_A 16 PLVKSEETVILQCWS-DV-RFQHFLLHREGKFKDTLHLIGEHHDGV---------------------------------- 59 (257)
T ss_dssp SEEESSCCEEEEEEE-SS-CCSEEEEEEESTTCEEEEEECBCCTTC----------------------------------
T ss_pred CEecCCCCEEEEEec-CC-CCcEEEEEECCCCCCcceeeeeccCCC----------------------------------
Confidence 567899999999998 33 467899999886542110000000000
Q ss_pred EEEeccceEEEEeeeecCCCeeEEEEeeeCC-----ccCCceeEEEEec---CCCCCCCCcccccCCceEEEEEEeecCC
Q psy14540 196 LRVNEYTSSLSIATLSTGHSGNYTCVASNTV-----ASDNHSSNLRVNV---PPHIGPFTFGELMEGVRTQVACVVQSGD 267 (291)
Q Consensus 196 ~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~-----~~~~~~~~l~v~~---~p~~~~~~~~~~~~g~~v~l~C~~~~~~ 267 (291)
....|.|.+++.+|+|.|+|.+.+.. ...+..+.|.|.. +|.+...+...+.+|+.++|.|.+ .+.
T Consensus 60 -----~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~~~s~~S~~~~L~V~~~~~~P~l~~~p~~~V~~G~~vtL~C~~-~~~ 133 (257)
T 1b6u_A 60 -----SKANFSIGPMMQDLAGTYRCYGSVTHSPYQLSAPSDPLDIVITGLYEKPSLSAQPGPTVLAGESVTLSCSS-RSS 133 (257)
T ss_dssp -----EEEEEEECSCCTTTCEEEEEEEECSSCTTSCCCCCCCEEEEEECSSCCCEEECSSCTTCBTTCEEEEEEEC-SSC
T ss_pred -----ceEEEEeecCCcccCEEEEEeEeccCCCccccccCCCEEEecccCCCCcceEccCCCccCCCCEEEEEEeC-CCC
Confidence 13456677777777777888776532 2345666777764 355555554458999999999998 655
Q ss_pred CCceEEEEECCEEcc
Q psy14540 268 LPLSLQWYKNGLAIS 282 (291)
Q Consensus 268 p~~~v~W~~~~~~l~ 282 (291)
+ +.|.|+|||..+.
T Consensus 134 ~-~~~~w~k~g~~~~ 147 (257)
T 1b6u_A 134 Y-DMYHLSREGEAHE 147 (257)
T ss_dssp C-SEEEEEETTSSCE
T ss_pred C-cEEEEEECCcccC
Confidence 4 6899999998764
No 361
>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Probab=99.61 E-value=3.9e-15 Score=94.71 Aligned_cols=78 Identities=24% Similarity=0.416 Sum_probs=50.6
Q ss_pred cCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCC--ceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCC
Q psy14540 111 SNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDA--EITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVA 188 (291)
Q Consensus 111 ~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~ 188 (291)
..+....+.+|+.+.|.|.+ .|.|.|.+.|+++|..+.... ++.+...+ ....|.|.++..+|+|.|+|.|.|..|
T Consensus 10 ~~p~~~~v~~G~~~~l~C~~-~g~P~p~v~W~k~g~~i~~~~~~~~~~~~~~-~~~~L~I~~~~~~D~G~Y~C~a~N~~G 87 (100)
T 3knb_A 10 ALPSDISIDEGKVLTVACAF-TGEPTPEVTWSCGGRKIHSQEQGRFHIENTD-DLTTLIIMDVQKQDGGLYTLSLGNEFG 87 (100)
T ss_dssp CCCSEEEEETTSEEEEEEEE-EEESCCEEEEEETTEECCTTGGGTEEEEECS-SEEEEEESSCCGGGCEEEEEEEEETTE
T ss_pred eCCCcEEEeCCCeEEEEEEE-EEecCCEEEEEECceEeeeeccceeeeeccc-ceEEEEEcCCCccCCEEEEEEEEECCC
Confidence 44566789999999999999 699999999999999986543 23222221 233455555554454444444444444
Q ss_pred CC
Q psy14540 189 SD 190 (291)
Q Consensus 189 ~~ 190 (291)
..
T Consensus 88 ~~ 89 (100)
T 3knb_A 88 SD 89 (100)
T ss_dssp EE
T ss_pred EE
Confidence 33
No 362
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Probab=99.61 E-value=4.8e-15 Score=102.52 Aligned_cols=95 Identities=23% Similarity=0.456 Sum_probs=78.9
Q ss_pred CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCC-CeeEeceEEeeccceEEEEEEeecCCCCCeEEEEE
Q psy14540 2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAG-DRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCT 80 (291)
Q Consensus 2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~ 80 (291)
+|.|...+....+.+|+.++|.|.+.+.|.+.+.|++++..+.. .++.. .........|.|.+++..|+|.|+|.
T Consensus 41 ~P~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~----~~~~~~~~~L~I~~v~~~D~G~Y~C~ 116 (154)
T 1fhg_A 41 KPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQI----DYDEEGNCSLTISEVCGDDDAKYTCK 116 (154)
T ss_dssp EEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCSSSEEE----EECTTCEEEEEESSCCGGGCEEEEEE
T ss_pred CCeEEccCCcEEEeCCCeEEEEEEEEEecCCEEEEEECCEECCCCCcEEE----EECCCCeEEEEECCCChhcCEEEEEE
Confidence 67888888889999999999999999988999999999998873 33322 11223457899999999999999999
Q ss_pred EeCCCCceeeeeeEEEEcCC
Q psy14540 81 ATNRVGSQTHSADMRVYDAP 100 (291)
Q Consensus 81 ~~~~~~~~~~~~~l~v~~~~ 100 (291)
+.|..|.....+.|.|...+
T Consensus 117 a~N~~G~~~~~~~l~V~~~p 136 (154)
T 1fhg_A 117 AVNSLGEATCTAELLVETMG 136 (154)
T ss_dssp EEETTEEEEEEEEEEEECC-
T ss_pred EEECCCeEEEEEEEEEeCcC
Confidence 99999988888899998766
No 363
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0
Probab=99.61 E-value=1.3e-15 Score=98.76 Aligned_cols=92 Identities=30% Similarity=0.524 Sum_probs=67.5
Q ss_pred CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCC-CeeEeceEEeeccceEEEEEEeecCCCCCeEEEEE
Q psy14540 2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAG-DRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCT 80 (291)
Q Consensus 2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~ 80 (291)
+|.|...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+.. ..... ..+ ...|.|.+++.+|+|.|+|.
T Consensus 10 ~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~-----~~~--~~~L~i~~v~~~D~G~Y~C~ 82 (108)
T 3kvq_A 10 APTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVL-----KDG--NRNLTIRRVRKEDEGLYTCQ 82 (108)
T ss_dssp -CCCBSCCCCEEEETTCCEEEECBCC----CCEEEEESSSBCCCBTTEEE-----ETT--TTEEEECSCCGGGCEEEEEE
T ss_pred CCceecCCCCeEEeCCCeEEEEEECcCcCCCeEEEEECCeEcccCCCeEE-----eCC--CcEEEEeecCcccCEEEEEE
Confidence 78888889999999999999999999888899999999987762 22211 111 24599999999999999999
Q ss_pred EeCCCCceeeeeeEEEEcCC
Q psy14540 81 ATNRVGSQTHSADMRVYDAP 100 (291)
Q Consensus 81 ~~~~~~~~~~~~~l~v~~~~ 100 (291)
+.|..|.....+.|.|...+
T Consensus 83 a~n~~g~~~~~~~l~V~~~~ 102 (108)
T 3kvq_A 83 ACSVLGCAKVEAFFIIEGAQ 102 (108)
T ss_dssp EC----CEEEEEEEEEEC--
T ss_pred EEeCCCceEEEEEEEEeCCC
Confidence 99999999889999998765
No 364
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A
Probab=99.61 E-value=3.9e-15 Score=105.62 Aligned_cols=130 Identities=15% Similarity=0.173 Sum_probs=83.1
Q ss_pred cceeecCCCceEEEEEee-CCCCCceeEEeE--CCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCC
Q psy14540 114 RSIKVHSGDRAGVQCLVT-KGDPPLTISWLK--NGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASD 190 (291)
Q Consensus 114 ~~~~~~~g~~~~l~C~~~-~~~p~~~~~W~~--~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~ 190 (291)
..+...+|+.++|.|... .+.+.+.+.|++ ++..+..... +. ... ...+.|
T Consensus 7 ~~v~g~~G~sv~L~~~~~~~~~~~~~i~W~k~~~~~~i~~~~~------~~--~~~-------~~~~R~----------- 60 (182)
T 1hnf_A 7 LETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRK------EK--ETF-------KEKDTY----------- 60 (182)
T ss_dssp EEEEEETTSCEEECCTTCCCCSSEEEEEEEEGGGCCEEEEECG------GG--CEE-------ESCTTE-----------
T ss_pred cEEEEecCCCEEEeCCcccccCcCCEEEEEECCCCcEEEEEeC------cc--CCC-------CCCCeE-----------
Confidence 446777999999999542 235577999999 7765421000 00 000 000111
Q ss_pred CCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccC--CceeEEEEecCCCCCCCCcccccCCceEEEEEEeecCCC
Q psy14540 191 NHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASD--NHSSNLRVNVPPHIGPFTFGELMEGVRTQVACVVQSGDL 268 (291)
Q Consensus 191 ~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~--~~~~~l~v~~~p~~~~~~~~~~~~g~~v~l~C~~~~~~p 268 (291)
. +. .+++|.|.+++.+|+|.|+|.+.|..+.. ...+.|.|..+... +. ....+..++|+|.+ .+.|
T Consensus 61 ----~--~~-~ngsL~I~~v~~~DsG~Y~c~~~n~~g~~~~~~~~~L~V~~~~~~---P~-i~~~~~~v~L~C~~-~~~p 128 (182)
T 1hnf_A 61 ----K--LF-KNGTLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQERVSK---PK-ISWTCINTTLTCEV-MNGT 128 (182)
T ss_dssp ----E--EC-TTSCEEECSCCGGGCEEEEEEEEETTSCEEEEEEEEEEEECCCCC---CE-EEEETTTTEEEEEC-SSCS
T ss_pred ----E--EC-CCCCEEECCCChhhCEEEEEEEEeCCCceeEEEEEEEEEcCcCCC---CE-EEEccCcEEEEeEc-cCCC
Confidence 1 11 24579999999999999999999877654 34567777653211 11 11133479999999 7778
Q ss_pred CceEEEEECCEEc
Q psy14540 269 PLSLQWYKNGLAI 281 (291)
Q Consensus 269 ~~~v~W~~~~~~l 281 (291)
++.|.|++||..|
T Consensus 129 ~~~~~W~~~g~~l 141 (182)
T 1hnf_A 129 DPELNLYQDGKHL 141 (182)
T ss_dssp SCEEEEEESSCEE
T ss_pred CCEEEEEECCEEC
Confidence 8999999999988
No 365
>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A
Probab=99.61 E-value=1.2e-14 Score=92.75 Aligned_cols=89 Identities=17% Similarity=0.314 Sum_probs=71.0
Q ss_pred CCcceeecce-eeeecCCcEEEEEEecCCCCCeeEEEECCeecC-CCeeEeceEEeeccceEEEEEEeecCCCCCeEEEE
Q psy14540 2 HPQLIYKFIQ-QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLA-GDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQC 79 (291)
Q Consensus 2 ~p~~~~~~~~-~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C 79 (291)
+|.|...+.+ ..+.+|+++.|.|.+. .|.+.+.|++++..+. ..++.. ........|.|.+++.+|+|.|+|
T Consensus 7 ~p~~~~~~~~~~~v~~G~~v~l~C~~~-~p~~~v~W~k~g~~i~~~~~~~~-----~~~~~~~~L~I~~~~~~D~G~Y~C 80 (100)
T 2yuv_A 7 GAAFAKILDPAYQVDKGGRVRFVVELA-DPKLEVKWYKNGQEIRPSTKYIF-----EHKGCQRILFINNCQMTDDSEYYV 80 (100)
T ss_dssp SCCEEECCCSCEEECTTEEEEEEEEES-CTTSCEEEEESSCBCCCBTTEEE-----EEETTEEEEEEEEECTTTCCEEEE
T ss_pred CCeEEecCCCccEEcCCCcEEEEEEec-CCCceEEEEECCEECCCCCCEEE-----EecCCEEEEEEcCCCcCcCEEEEE
Confidence 7888888876 5789999999999998 6888999999998876 333332 123334679999999999999999
Q ss_pred EEeCCCCceeeeeeEEEEcCC
Q psy14540 80 TATNRVGSQTHSADMRVYDAP 100 (291)
Q Consensus 80 ~~~~~~~~~~~~~~l~v~~~~ 100 (291)
.+ +.......|.|..+|
T Consensus 81 ~a----g~~~~~~~l~V~~~P 97 (100)
T 2yuv_A 81 TA----GDEKCSTELFVRSGP 97 (100)
T ss_dssp EE----TTEEEEEEEEECCSC
T ss_pred EE----CCceEEEEEEEecCC
Confidence 99 566777788887654
No 366
>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}
Probab=99.61 E-value=4.9e-15 Score=90.69 Aligned_cols=80 Identities=23% Similarity=0.375 Sum_probs=61.7
Q ss_pred cceeeeecCCcEEEEEEecCCCCCeeEEEECCeecC-CCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCc
Q psy14540 9 FIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLA-GDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGS 87 (291)
Q Consensus 9 ~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~ 87 (291)
..++.+.+|+.+.|.|.+.+ |.+.+.|+|||..+. ..++.+ ......++|.|.+++.+|+|.|+|.+.+
T Consensus 3 lt~v~~~~G~~v~l~C~vs~-p~p~v~W~k~g~~l~~~~~~~~-----~~~~~~~~L~I~~~~~~D~G~Y~C~a~n---- 72 (84)
T 2lu7_A 3 MTRVRSTPGGDLELVVHLSG-PGGPVRWYKDGERLASQGRVQL-----EQAGARQVLRVQGARSGDAGEYLCDAPQ---- 72 (84)
T ss_dssp CCCEEECTTSCEEEECCCSC-CSTTCEEEETTEECCCCSSEEE-----EECSSCEEEEESSCSSTTCEEEEEECTT----
T ss_pred CeEEEEecCCCEEEEEEECC-CCcEEEEEECCEEccccccEEE-----eecCCeEEEEecCCCCcccEEEEEEECC----
Confidence 34678899999999999865 888999999999987 344333 2234457799999999999999998843
Q ss_pred eeeeeeEEEEc
Q psy14540 88 QTHSADMRVYD 98 (291)
Q Consensus 88 ~~~~~~l~v~~ 98 (291)
....+.|.|.+
T Consensus 73 ~~~~a~l~V~e 83 (84)
T 2lu7_A 73 DSRIFLVSVEE 83 (84)
T ss_dssp TCEEEEEEECC
T ss_pred EEEEEEEEEEC
Confidence 45566677653
No 367
>3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens}
Probab=99.61 E-value=4.7e-14 Score=110.29 Aligned_cols=132 Identities=17% Similarity=0.223 Sum_probs=85.4
Q ss_pred ecceeeeecCCcEEEEEEecCCC--------------CCeeEEEEC--Ce--ecC---CCe------eEec-e-EEee--
Q psy14540 8 KFIQQTLQPGPPVSLKCIATGNP--------------TPHISWKLD--GY--PLA---GDR------FVMG-Q-YMSL-- 56 (291)
Q Consensus 8 ~~~~~~v~~g~~v~l~C~~~~~~--------------~~~v~W~~~--~~--~~~---~~~------~~~~-~-~~~~-- 56 (291)
.+..+.+.+|++++|.|.+...+ ...+.||+. |+ .+. .+. +... . +...
T Consensus 164 q~~sv~a~~Ge~vtL~C~~S~~~~~~~a~~~~~~~~~~~~V~Wyrq~pg~~~~vliY~~g~~~q~~~~~~g~~~f~~~~~ 243 (401)
T 3f8u_B 164 HTPAPRVRLGQDALLDLSFAYMPPTSEAASSLAPGPPPFGLEWRRQHLGKGHLLLAATPGLNGQMPAAQEGAVAFAAWDD 243 (401)
T ss_dssp SCSSCEEETTSCEEECCEEEECCCTTC------CCSCCCEEEEEEEETTEEEEEEEECTTSCCCCCCCCTTCEEEEEESC
T ss_pred CCCcEEEeCCCCEEEEEeCCCCcccccccccccccCCceEEEEEEecCCCCcEEEEEeCCCccccccccCCeEEEEeecc
Confidence 44567889999999999986422 356999972 32 111 110 0000 0 1000
Q ss_pred -----ccceEEEEEEeecCCCCCeEEEEEEeCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCC-ceEEEEEe
Q psy14540 57 -----HGDVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGD-RAGVQCLV 130 (291)
Q Consensus 57 -----~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~l~C~~ 130 (291)
...+.++|.|.+++.+|+|.|.|.+.+..+.....+.|.|...|. ... .......+..|+ .++|.|.+
T Consensus 244 ~~~~g~~~g~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~v~L~V~~pP~-----V~v-~p~~~~~~~~G~~~vtL~C~a 317 (401)
T 3f8u_B 244 DEPWGPWTGNGTFWLPRVQPFQEGTYLATIHLPYLQGQVTLELAVYKPPK-----VSL-MPATLARAAPGEAPPELLCLV 317 (401)
T ss_dssp CCSSCCEEEEEEEEETTCCGGGCEEEEEEEEETTEEEEEEEEEEEEBCCE-----EEE-ESSSCCCCCTTCCCCCEEEEE
T ss_pred cccccccCCcEEEEECcCCHhhCceEEEEEEecccceeEEEEEeeccCCe-----Eee-ccCcceeecCCCccEEEEEEe
Confidence 123568899999999999999999987766666777888876541 111 111112234676 79999999
Q ss_pred eCCCCC--ceeEEe-ECC
Q psy14540 131 TKGDPP--LTISWL-KNG 145 (291)
Q Consensus 131 ~~~~p~--~~~~W~-~~~ 145 (291)
...+|. +.+.|+ +++
T Consensus 318 ~GfyP~~~~~VtW~~rdg 335 (401)
T 3f8u_B 318 SHFYPSGGLEVEWELRGG 335 (401)
T ss_dssp EEEBSSTTCEEEEEEESS
T ss_pred cCCcCCCCcEEEEEecCC
Confidence 766776 799995 765
No 368
>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D*
Probab=99.61 E-value=1.3e-15 Score=113.28 Aligned_cols=131 Identities=15% Similarity=0.258 Sum_probs=84.9
Q ss_pred ecCCCceEEEEEeeCCC--CCc-eeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCce
Q psy14540 118 VHSGDRAGVQCLVTKGD--PPL-TISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSS 194 (291)
Q Consensus 118 ~~~g~~~~l~C~~~~~~--p~~-~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~ 194 (291)
+.+|+.++|.|.+.+.. |.+ .+.|++++..+...... .......|.|.-
T Consensus 29 v~~G~~v~L~C~~~g~~~~P~~~~v~W~k~~~~~~~~~~~---------------~~~~~~~~~~~~------------- 80 (239)
T 1i1c_A 29 LGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTH---------------APEKQSNSTLRS------------- 80 (239)
T ss_dssp TTSSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEEC---------------CCEECTTSCEEE-------------
T ss_pred cccCCcEEEEEEEecCccCCCCCEEEEEECCccccCcccc---------------cceEcCCCcEEE-------------
Confidence 67999999999995332 765 89999988665321000 000012233321
Q ss_pred EEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEE----EEecCCCCCCCCccc-ccCCceEEEEEEeecCCCC
Q psy14540 195 NLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNL----RVNVPPHIGPFTFGE-LMEGVRTQVACVVQSGDLP 269 (291)
Q Consensus 195 ~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l----~v~~~p~~~~~~~~~-~~~g~~v~l~C~~~~~~p~ 269 (291)
...|.|..+..+|+|.|.|.+.+..+.......+ .+..+|.+...+... ...|+.++|.|.+.+.+|+
T Consensus 81 -------~s~L~I~~~~~~D~g~Y~C~~~~~~~~~~~~~~v~~~~~~~~~P~v~v~~~~~~~~~g~~~~L~C~~~g~~P~ 153 (239)
T 1i1c_A 81 -------VSELPIVERDWLNGKTFKCKVNSGAFPAPIEKSISKPEGTPRGPQVYTMAPPKEEMTQSQVSITCMVKGFYPP 153 (239)
T ss_dssp -------EEEEECCHHHHHTTCCEEEEEECSSSSSCEEEEECCCSSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSS
T ss_pred -------EEEEEEEhhHccCCCeEEEEEecccCCCCcEEEEecCCCCCcCCEEEEECCChHHhcCCcEEEEEEEeeeECC
Confidence 3468888888899999999999887654332222 233456554443332 3458899999999444665
Q ss_pred -ceEEEEECCEEccC
Q psy14540 270 -LSLQWYKNGLAISQ 283 (291)
Q Consensus 270 -~~v~W~~~~~~l~~ 283 (291)
..|.|+|||.++.+
T Consensus 154 ~~~v~W~k~g~~l~~ 168 (239)
T 1i1c_A 154 DIYTEWKMNGQPQEN 168 (239)
T ss_dssp CCEEEEEETTEECSS
T ss_pred CeEEEEEECCEECCC
Confidence 58999999998854
No 369
>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}
Probab=99.61 E-value=9e-15 Score=110.95 Aligned_cols=148 Identities=18% Similarity=0.291 Sum_probs=87.3
Q ss_pred CCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCC
Q psy14540 112 NSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDN 191 (291)
Q Consensus 112 ~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~ 191 (291)
.+..+.+.+|+.++|.|.+. .+.+.+.|++.... ............ .. ...... ..+.|
T Consensus 32 ~p~~v~v~~G~~v~L~C~~~--~~~~~v~W~r~~~~--~~~~~~~~~~~~--~~--~~~~~~-~~~R~------------ 90 (268)
T 3pl6_D 32 TPSNKVTEKGKYVELRCDPI--SGHTALYWYRQSLG--QGPEFLIYFQGT--GA--ADDSGL-PNDRF------------ 90 (268)
T ss_dssp CCSEEEEETTCCEEEEEBCB--TTCCEEEEEEECTT--SCCEEEEEEETT--EE--EECTTC-CSTTE------------
T ss_pred CCCEEEecCCCCEEEEEEeC--CCCceEEEEEECCC--CCcEEEEEECCC--Cc--cccCCC-ccCcE------------
Confidence 34557788999999999983 57789999983210 000000000000 00 000000 00111
Q ss_pred CceEEEE-eccceEEEEeeeecCCCeeEEEEeeeC--CccCCceeEEEEec------CCCCCCCCccc--ccCCceEEEE
Q psy14540 192 HSSNLRV-NEYTSSLSIATLSTGHSGNYTCVASNT--VASDNHSSNLRVNV------PPHIGPFTFGE--LMEGVRTQVA 260 (291)
Q Consensus 192 ~~~~~~~-~~~~~~l~i~~~~~~~~g~y~C~~~~~--~~~~~~~~~l~v~~------~p~~~~~~~~~--~~~g~~v~l~ 260 (291)
.+.. ......|.|.+++.+|+|.|.|.+.+. .........|.|.. +|.+....... +.+|+.++|.
T Consensus 91 ---~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~ 167 (268)
T 3pl6_D 91 ---FAVRPEGSVSTLKIQRTERGDSAVYLCATSALGDTQYFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLV 167 (268)
T ss_dssp ---EEECTTSSSEEEEECSCCGGGCEEEEEEEESSSSSCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEE
T ss_pred ---EEEecCCCEEEEEECCCCcccCEEEEEEEecCCCceeeCCcEEEEEecCcccccCCceEEeCCCcccccCCCceEEE
Confidence 1111 122567999999999999999999874 23334445666664 44433322222 6679999999
Q ss_pred EEeecCCCCc-eEEEEECCEEccC
Q psy14540 261 CVVQSGDLPL-SLQWYKNGLAISQ 283 (291)
Q Consensus 261 C~~~~~~p~~-~v~W~~~~~~l~~ 283 (291)
|.+.+.+|++ .|.|++||..+..
T Consensus 168 C~~~g~~p~~~~v~W~~~g~~l~~ 191 (268)
T 3pl6_D 168 CLATGFYPDHVELSWWVNGKEVHS 191 (268)
T ss_dssp EEEEEEBSSCEEEEEEESSSEECT
T ss_pred EEECcccCCCeEEEEEECCEECCC
Confidence 9994445544 9999999998854
No 370
>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}
Probab=99.60 E-value=4.4e-15 Score=92.39 Aligned_cols=76 Identities=17% Similarity=0.274 Sum_probs=57.2
Q ss_pred CCcceeeccee--eeecCCcEEEEEEecCCCCCeeEEEECCeecC-CCeeEeceEEeeccceEEEEEEeecCCCCCeEEE
Q psy14540 2 HPQLIYKFIQQ--TLQPGPPVSLKCIATGNPTPHISWKLDGYPLA-GDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQ 78 (291)
Q Consensus 2 ~p~~~~~~~~~--~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~ 78 (291)
||.|...+.+. .+.+|+.+.|.|.+.+ |.+.+.|+|||..+. ..++.+ ...+..++|.|.+++.+|+|.|+
T Consensus 4 P~~i~~p~~~~~v~~~~g~~v~l~C~v~~-p~~~v~W~k~g~~i~~~~~~~i-----~~~~~~~~L~I~~v~~~D~G~Y~ 77 (91)
T 2lvc_A 4 PVHIVDPREHVFVHAITSECVMLACEVDR-EDAPVRWYKDGQEVEESDFVVL-----ENEGPHRRLVLPATQPSDGGEFQ 77 (91)
T ss_dssp CCCCCBCCSCEEEECCTTCCEEEEEECSC-TTSCCEEEETTSCCCCCSSCEE-----EEETTEEEEEESSCCGGGCSEEE
T ss_pred CcEEeccCCCeEEEEECCCcEEEEEEECC-CCcEEEEEECCEEeeeeeeeeE-----EecCCeEEEEeCCCChhhcEEEE
Confidence 45555544444 4468999999999865 778899999999887 344333 22334577999999999999999
Q ss_pred EEEeC
Q psy14540 79 CTATN 83 (291)
Q Consensus 79 C~~~~ 83 (291)
|.+.+
T Consensus 78 C~a~n 82 (91)
T 2lvc_A 78 CVAGD 82 (91)
T ss_dssp EECSS
T ss_pred EEEcc
Confidence 99854
No 371
>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=5.7e-15 Score=94.77 Aligned_cols=90 Identities=14% Similarity=0.255 Sum_probs=71.8
Q ss_pred CCcceeecceeeeecCCcEEEEEEecCCCC-CeeEEEECCeecC-CCeeEeceEEeeccceEEEEEEeecCCCCCeEEEE
Q psy14540 2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPT-PHISWKLDGYPLA-GDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQC 79 (291)
Q Consensus 2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~-~~v~W~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C 79 (291)
||.|...+.+..+.+|++++|.|.+.+.+. +.+.|+|+|..+. ..++.+ ......++|.|.+++.+|+|.|+|
T Consensus 8 p~~~~~~~~~~~v~~G~~v~l~C~v~~~~~~~~v~W~k~g~~i~~~~r~~~-----~~~~~~~~L~I~~v~~~D~G~Y~C 82 (104)
T 2eny_A 8 HVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQA-----TRQGRKYILVVREAAPSDAGEVVF 82 (104)
T ss_dssp CCCCSBCCCCEEEESSCCEEEEEECSSCCCSSCBCCBSSSSBCSBCSSCEE-----EEETTEEEEEECSCCTTTCSCEEE
T ss_pred CCEEEecCCCcEEcCCCcEEEEEEEcCCCCCceeEEEECCEECCCCCCEEE-----EEcCCEEEEEECCCCHHHCEEEEE
Confidence 568888899999999999999999988664 4799999999887 334332 122335679999999999999999
Q ss_pred EEeCCCCceeeeeeEEEEcCC
Q psy14540 80 TATNRVGSQTHSADMRVYDAP 100 (291)
Q Consensus 80 ~~~~~~~~~~~~~~l~v~~~~ 100 (291)
.+. .......|.|..+|
T Consensus 83 ~a~----~~~~~a~L~V~~~p 99 (104)
T 2eny_A 83 SVR----GLTSKASLIVRERS 99 (104)
T ss_dssp EET----TEEEEECEEEECCC
T ss_pred EEC----CeeEEEEEEEeCCC
Confidence 884 35677888888766
No 372
>3nfj_J T cell receptor beta chain; immunoglobulin family, immune system; 2.68A {Homo sapiens} PDB: 3hg1_E
Probab=99.60 E-value=8.9e-15 Score=109.45 Aligned_cols=144 Identities=19% Similarity=0.294 Sum_probs=87.5
Q ss_pred CcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCC---CCCceeEEEEEEecCCC
Q psy14540 113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLS---TGHSGNYTCVASNTVAS 189 (291)
Q Consensus 113 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~---~~d~g~y~C~~~~~~~~ 189 (291)
+..+.+.+|+.++|.|.+ .+.+.+.+.|++.... .... ..+...... ....+.|....
T Consensus 8 p~~v~v~~G~~v~L~C~~-~~~~~~~v~W~k~~~~----~~~~--------~~~~~~~~~~~~~~~~~R~~~~~------ 68 (245)
T 3nfj_J 8 PATLVQPVGSPLSLECTV-EGTSNPNLYWYRQAAG----RGLQ--------LLFYSVGIGQISSEVPQNLSASR------ 68 (245)
T ss_dssp CSEEEEETTCCEEEEEEE-ESCSSCEEEEEEESTT----SCEE--------EEEEESSTTCCBCSSCCSSEEEE------
T ss_pred CceEEecCCCCEEEEEEe-cCCCCceEEEEEECCC----CCcE--------EEEEECCCcccCCccCCcEEEEe------
Confidence 345778899999999999 5778899999983211 0000 000000000 00011111111
Q ss_pred CCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCc------cCCceeEEEEec------CCCCCCCCccc--ccCCc
Q psy14540 190 DNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVA------SDNHSSNLRVNV------PPHIGPFTFGE--LMEGV 255 (291)
Q Consensus 190 ~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~------~~~~~~~l~v~~------~p~~~~~~~~~--~~~g~ 255 (291)
-.....+|.|.++..+|+|.|.|.+.+..+ .......|.|.. +|.+....... +..|+
T Consensus 69 --------~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~ 140 (245)
T 3nfj_J 69 --------PQDRQFILSSKKLLLSDSGFYLCAWSVSVGAGVPTIYFGEGSWLTVVEDLNKVFPPEVAVFEPSEAEISHTQ 140 (245)
T ss_dssp --------EETTEEEEEESSCCGGGCEEEEEEEECCTTTSSCCCEECCCEEEEEESCGGGCBCCEEEEEECCHHHHHHHS
T ss_pred --------cCCCEEEEEECCCChhhCEEEEEEEeeccCCCceeEEECCCeEEEEEcccCCCCCCceEeecCCcccccCCC
Confidence 112356789999999999999999988321 223344666664 44443322222 55699
Q ss_pred eEEEEEEeecCCCCc-eEEEEECCEEccC
Q psy14540 256 RTQVACVVQSGDLPL-SLQWYKNGLAISQ 283 (291)
Q Consensus 256 ~v~l~C~~~~~~p~~-~v~W~~~~~~l~~ 283 (291)
.++|.|.+.+..|++ .+.|++||..|..
T Consensus 141 ~~~l~C~~~g~~p~~~~v~W~k~g~~l~~ 169 (245)
T 3nfj_J 141 KATLVCLATGFFPDHVELSWWVNGKEVHS 169 (245)
T ss_dssp EEEEEEEEEEEBSSCEEEEEEETTEEECT
T ss_pred ceEEEEEEccCcCCCEEEEEEECCEECCC
Confidence 999999994435544 8999999999865
No 373
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative splicing, cell adhesion, cell membrane, glycoprotein, HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3uro_R 3epc_R* 3epd_R* 3epf_R*
Probab=99.60 E-value=7.9e-16 Score=113.36 Aligned_cols=144 Identities=19% Similarity=0.282 Sum_probs=90.5
Q ss_pred cceeecCCCceEEEEEeeCCCCCc----eeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCC
Q psy14540 114 RSIKVHSGDRAGVQCLVTKGDPPL----TISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVAS 189 (291)
Q Consensus 114 ~~~~~~~g~~~~l~C~~~~~~p~~----~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 189 (291)
..+.+.+|+.++|.|.+..+.+.+ .+.|++++....... +... .+ ..+. +.|.+..... ..+
T Consensus 7 ~~v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~-~~~~-~~-----~~~~-----~~~r~~~~~~-~~~- 72 (221)
T 3eow_R 7 TQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAV-FHQT-QG-----PSYS-----ESKRLEFVAA-RLG- 72 (221)
T ss_dssp CCCCCCCSSCCEEECCCCCCSSSCCCEEEEEECBSSSCSSCCC-EEES-SS-----EEEC-----SCSSCEEESS-CSS-
T ss_pred CcEEEEeCCCEEEEeeeccCCCCCccceEEEEEeCCCCceEEE-EECC-CC-----CCcC-----CCCcEEEecc-cCC-
Confidence 346678999999999984444444 499999864321110 0000 00 0000 0011100000 000
Q ss_pred CCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCC-ccCCceeEEEEecCCCCCCCCcccccCCceEE-EEEEeecCC
Q psy14540 190 DNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTV-ASDNHSSNLRVNVPPHIGPFTFGELMEGVRTQ-VACVVQSGD 267 (291)
Q Consensus 190 ~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~-~~~~~~~~l~v~~~p~~~~~~~~~~~~g~~v~-l~C~~~~~~ 267 (291)
......+|.|.++..+|+|.|+|.+.+.. +.....+.|.|..+|.+..........|+.+. |+|.+..+.
T Consensus 73 --------~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~L~V~~~P~~~~~~~~~~~~g~~~~~l~C~~~~g~ 144 (221)
T 3eow_R 73 --------AELRDASLRMFGLRVEDEGSYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQLTGEPVPMARCVSTGGR 144 (221)
T ss_dssp --------CCCCCCEEECCCSSCCCCSCBEEEEEESSSCSCEEECCCCCCCCCEEEEEEECCCCCSSSCCEEEEEEESCS
T ss_pred --------CCCCCceEEEccCChHHCeEEEEEEEeCCCCceEEEEEEEEEECCCceeecCCcccCCceEEEEEEECCCcc
Confidence 01125679999999999999999999876 67777788888888877654333346788884 999985699
Q ss_pred CCceEEEEECCE
Q psy14540 268 LPLSLQWYKNGL 279 (291)
Q Consensus 268 p~~~v~W~~~~~ 279 (291)
|.|.|+|++++.
T Consensus 145 P~p~v~W~k~~~ 156 (221)
T 3eow_R 145 PPAQITWHSDLG 156 (221)
T ss_dssp SCCCEEEECSSS
T ss_pred CCCeeEEEeCCC
Confidence 999999998844
No 374
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*
Probab=99.60 E-value=1.7e-15 Score=110.87 Aligned_cols=124 Identities=15% Similarity=0.157 Sum_probs=75.4
Q ss_pred CcceeecCC--CceEEEEEeeCCCCCceeEEeEC---CEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecC
Q psy14540 113 SRSIKVHSG--DRAGVQCLVTKGDPPLTISWLKN---GLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTV 187 (291)
Q Consensus 113 ~~~~~~~~g--~~~~l~C~~~~~~p~~~~~W~~~---~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 187 (291)
+..+.+.+| +.+.|.|.+ .+ |.+.+.|+++ +..+..........
T Consensus 14 p~~v~v~eG~~~~v~L~C~~-~~-p~~~v~w~~~~~~g~~~~~~~~~~~~~----------------------------- 62 (213)
T 2x1w_L 14 HGVVYITENKNKTVVIPCLG-SI-SNLNVSLCARYPEKRFVPDGNRISWDS----------------------------- 62 (213)
T ss_dssp CEEEEECCSTTCEEEECCCB-SS-TTCCEEEEEETTTEEECCCSSSCEEET-----------------------------
T ss_pred ceEEEEecCCCccEEEeecc-CC-CCcEEEEEhhcCCCccccCCCcccccC-----------------------------
Confidence 456788899 999999998 45 6789999884 55554332222111
Q ss_pred CCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCcc-CCceeEEEEec--CCCCCCCC-cc-cccCCceEEEEEE
Q psy14540 188 ASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVAS-DNHSSNLRVNV--PPHIGPFT-FG-ELMEGVRTQVACV 262 (291)
Q Consensus 188 ~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~-~~~~~~l~v~~--~p~~~~~~-~~-~~~~g~~v~l~C~ 262 (291)
...|.|.++..+|+|.|+|.|.|..+. .+..+.|.|.. +|.+...+ .. .+.+|+.++|.|.
T Consensus 63 --------------~~~l~I~~v~~~D~G~Y~C~a~n~~~~~~s~~~~l~v~~~~~p~~~~~~~~~~~v~~G~~v~L~C~ 128 (213)
T 2x1w_L 63 --------------KKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCT 128 (213)
T ss_dssp --------------TTEEEEEGGGTTTCSEEEEEEC----CEECCCEEEEECBCCEEEEEEESCSCEEEETTCCEEEEEE
T ss_pred --------------CccEEEccCChhcCceEEEEEEECCeeEEEEEEEEEEeCCcccceEEcCCCCeEEcCCCCEEEEEE
Confidence 123555666666666666666653322 22234555532 22222222 22 3889999999999
Q ss_pred eecCCC--CceEEEEECCEEcc
Q psy14540 263 VQSGDL--PLSLQWYKNGLAIS 282 (291)
Q Consensus 263 ~~~~~p--~~~v~W~~~~~~l~ 282 (291)
+ .+.| ++.+.|+++|..+.
T Consensus 129 ~-~g~p~~~~~i~W~~~g~~~~ 149 (213)
T 2x1w_L 129 A-RTELNVGIDFNWEYPSSKHQ 149 (213)
T ss_dssp E-EECTTBCCEEEEECSCSSCC
T ss_pred E-ECCCCCceEEEEEecCCccc
Confidence 9 6543 45899999988653
No 375
>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=1.8e-14 Score=92.53 Aligned_cols=91 Identities=14% Similarity=0.296 Sum_probs=73.3
Q ss_pred CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecC-CCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEE
Q psy14540 2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLA-GDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCT 80 (291)
Q Consensus 2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~ 80 (291)
||.|...+....+.+|++++|.|.+ +.+.+.+.|++++..+. ..++.+ ......+.|.|.+++.+|+|.|+|.
T Consensus 8 pp~~~~~~~~~~v~~G~~v~l~C~~-~~p~~~v~W~k~~~~l~~~~~~~~-----~~~~~~~~L~I~~v~~~D~G~Y~C~ 81 (103)
T 2dku_A 8 ANCFTEELTNLQVEEKGTAVFTCKT-EHPAATVTWRKGLLELRASGKHQP-----SQEGLTLRLTISALEKADSDTYTCD 81 (103)
T ss_dssp CCCCSSCCCCEEEETTSEEEEEEEC-SSCCSCCEEEESSCBCCSSSSEEE-----EEETTEEEEEEESCCTTTCSEEEEE
T ss_pred CCEeEecCCcEEEeCCCcEEEEEEe-CCCCCeEEEEeCCEECCCCCeEEE-----EeCCCEEEEEECCCCcccCEEEEEE
Confidence 7889999999999999999999994 67888999999998887 333333 2233456799999999999999998
Q ss_pred EeCCCCceeeeeeEEEEcCCCC
Q psy14540 81 ATNRVGSQTHSADMRVYDAPGQ 102 (291)
Q Consensus 81 ~~~~~~~~~~~~~l~v~~~~~~ 102 (291)
.+.....+.|.|...+..
T Consensus 82 ----~g~~~~~~~l~V~~~p~~ 99 (103)
T 2dku_A 82 ----IGQAQSRAQLLVQGRRSG 99 (103)
T ss_dssp ----CSSCBCCEEEEEECSCCC
T ss_pred ----eCCceEEEEEEEeCccCC
Confidence 456666788888877644
No 376
>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D
Probab=99.60 E-value=1.4e-14 Score=108.33 Aligned_cols=147 Identities=16% Similarity=0.231 Sum_probs=85.2
Q ss_pred CcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCC
Q psy14540 113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNH 192 (291)
Q Consensus 113 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~ 192 (291)
+..+.+.+|+.++|.| . .+.+.+.+.|++.... ..........+ ...+. ..... .+.|.
T Consensus 9 p~~v~v~~G~~v~L~C-~-~~~~~~~v~W~r~~~~--~~~~~~~~~~~--~~~~~--~~~~~-~~r~~------------ 67 (245)
T 4ei6_B 9 PSHQIIDMGQMVTLNC-D-PVSNHLYFYWYKQILG--QQMEFLVNFYN--GKVME--KSKLF-KDQFS------------ 67 (245)
T ss_dssp CSEEEEETTCCEEEEE-E-CCTTCCEEEEEEEETT--TEEEEEEEEET--TEEEE--ECTTC-CTTEE------------
T ss_pred CceEEecCCCCEEEEE-E-cCCCCCEEEEEEECCC--CCcEEEEEECC--Cceec--cCCCc-cCCEE------------
Confidence 3457788999999999 4 4778889999983110 00000000000 00000 00000 01111
Q ss_pred ceEEEE-eccceEEEEeeeecCCCeeEEEEeeeCC----ccCCceeEEEEec------CCCCCCCCcc--cccCCceEEE
Q psy14540 193 SSNLRV-NEYTSSLSIATLSTGHSGNYTCVASNTV----ASDNHSSNLRVNV------PPHIGPFTFG--ELMEGVRTQV 259 (291)
Q Consensus 193 ~~~~~~-~~~~~~l~i~~~~~~~~g~y~C~~~~~~----~~~~~~~~l~v~~------~p~~~~~~~~--~~~~g~~v~l 259 (291)
+.. ......|.|.++..+|+|.|.|.+.+.. ........|.|.. +|.+...... .+.+|+.++|
T Consensus 68 ---~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~l 144 (245)
T 4ei6_B 68 ---VERPDGSYFTLKIQPTALEDSAVYFCASSFWGAYAEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATL 144 (245)
T ss_dssp ---EECCTTSCEEEEECSCCGGGCEEEEEEEECSSTTCCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEE
T ss_pred ---EEeccCceEEEEECCCCHhHCEEEEEEEccCCCcceEEEcCCcEEEEecccCCCCCceEEEeCCCcccccCCCceEE
Confidence 111 1224578999999999999999998532 2233444566653 4444332222 2667999999
Q ss_pred EEEeecCCCCc-eEEEEECCEEccC
Q psy14540 260 ACVVQSGDLPL-SLQWYKNGLAISQ 283 (291)
Q Consensus 260 ~C~~~~~~p~~-~v~W~~~~~~l~~ 283 (291)
.|.+.+..|++ .+.|++||..|..
T Consensus 145 ~C~~~g~~p~~~~v~W~~~g~~l~~ 169 (245)
T 4ei6_B 145 VCLATGFYPDHVELSWWVNGKEVHS 169 (245)
T ss_dssp EEEEEEEBSSCEEEEEEETTEEECT
T ss_pred EEEEeeEeCCCeEEEEEECCEECCC
Confidence 99994446655 8999999999865
No 377
>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...
Probab=99.60 E-value=2.5e-15 Score=109.43 Aligned_cols=130 Identities=14% Similarity=0.268 Sum_probs=77.9
Q ss_pred cCCCceEEEEEeeCCCC---CceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceE
Q psy14540 119 HSGDRAGVQCLVTKGDP---PLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSN 195 (291)
Q Consensus 119 ~~g~~~~l~C~~~~~~p---~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~ 195 (291)
.+|+.++|.|.+.+..| ...+.|++++.++...... .......|.|..
T Consensus 16 ~~G~~v~L~C~~~g~~p~~~~~~v~W~k~~~~~~~~~~~---------------~~~~~~~g~~~~-------------- 66 (207)
T 1l6x_A 16 MISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTK---------------PREEQYNSTYRV-------------- 66 (207)
T ss_dssp CTTSCCEEEEEEEEECSSSCCCEEEEEETTEEECCCEEC---------------CCEECTTSCEEE--------------
T ss_pred ecCCceEEEEEEecccCCCCCeEEEEEECCccccCcccC---------------CceeccCCcEEE--------------
Confidence 68999999999953332 3599999999876432100 000011233321
Q ss_pred EEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEE----EEecCCCCCCCCccc-ccCCceEEEEEEeecCCCC-
Q psy14540 196 LRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNL----RVNVPPHIGPFTFGE-LMEGVRTQVACVVQSGDLP- 269 (291)
Q Consensus 196 ~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l----~v~~~p~~~~~~~~~-~~~g~~v~l~C~~~~~~p~- 269 (291)
...|.|...+.+|+|.|+|.|.|..+.......+ .+..+|.+...+... ...|+.++|.|.+.+.+|+
T Consensus 67 ------~~~l~i~~~d~~d~g~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~ 140 (207)
T 1l6x_A 67 ------VSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSD 140 (207)
T ss_dssp ------EEEEECCHHHHHTTCCEEEEEECTTSSSCEEEEECCCCSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSC
T ss_pred ------EEEEEEEHHHccCCceEEEEEEcCcCCcceEEEeccCCCCCcCCEEEEECCChHHhcCCcEEEEEEEeCeECCC
Confidence 1223344444556999999999877654333223 233456544433322 2346669999999444565
Q ss_pred ceEEEEECCEEccC
Q psy14540 270 LSLQWYKNGLAISQ 283 (291)
Q Consensus 270 ~~v~W~~~~~~l~~ 283 (291)
+.|.|+|||.++..
T Consensus 141 ~~v~W~k~g~~~~~ 154 (207)
T 1l6x_A 141 IAVEWESNGQPENN 154 (207)
T ss_dssp CEEEEEETTEEECC
T ss_pred eEEEEEECCeeccC
Confidence 49999999998853
No 378
>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*
Probab=99.60 E-value=4.5e-15 Score=107.71 Aligned_cols=55 Identities=20% Similarity=0.329 Sum_probs=39.5
Q ss_pred ecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEE
Q psy14540 118 VHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVAS 184 (291)
Q Consensus 118 ~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~ 184 (291)
+.+|+.++|.|.+ |.+.+.|+|+|..+.... .....|.|..+..+|+|.|+|.+.
T Consensus 15 ~~~G~~v~L~C~~----p~~~i~W~k~g~~l~~~~--------~~~~~L~i~~v~~~DsG~Y~C~~~ 69 (204)
T 1sy6_A 15 YQEDGSVLLTCDA----EAKNITWFKDGKMIGFLT--------EDKKKWNLGSNAKDPRGMYQCKGS 69 (204)
T ss_dssp CCSSSEEEEEECS----CSSEEEEEETTEEEEEEE--------SSCCCEEEEEGGGCCEEEEEEESS
T ss_pred ecCCCeEEEEEcC----CCCEEEEEECCEECCCCC--------CCCCeEEeCCCCcCCCEEEEEEec
Confidence 4589999999987 678999999998774320 013356777777777777777643
No 379
>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=2e-15 Score=96.62 Aligned_cols=93 Identities=17% Similarity=0.220 Sum_probs=69.5
Q ss_pred CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEE
Q psy14540 2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTA 81 (291)
Q Consensus 2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~ 81 (291)
||.|...+.+..+.+|+.+.|.|.+.+.+ +.+.|++++..+.........+..........|.|.+++.+|+|.|+|.+
T Consensus 8 p~~~~~~~~~~~v~~G~~v~l~C~~~~~~-~~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a 86 (101)
T 2edk_A 8 PVLIVTPLEDQQVFVGDRVEMAVEVSEEG-AQVMWMKNGVELTREDSFKARYRFKKDGKRHILIFSDVVQEDRGRYQVIT 86 (101)
T ss_dssp CCCEEECCCCEEEESSCCCBCCEEESCSS-CCCEEEESSCBCCCSCCSSCCCEEEECSSEEEEECSSCCGGGCSBEEEEC
T ss_pred CCEEEecCCceEEcCCCCEEEEEEEeCCC-CEEEEEECCEECCCCCCcceeEEEEECCCEEEEEECCCChhhCEEEEEEE
Confidence 67888888889999999999999999877 89999999988773211000011123344577999999999999999999
Q ss_pred eCCCCceeeeeeEEEEcC
Q psy14540 82 TNRVGSQTHSADMRVYDA 99 (291)
Q Consensus 82 ~~~~~~~~~~~~l~v~~~ 99 (291)
.+ ......|.|...
T Consensus 87 ~n----~~~~~~l~V~~~ 100 (101)
T 2edk_A 87 NG----GQCEAELIVEEK 100 (101)
T ss_dssp SS----CEECCBEEEECC
T ss_pred cC----CcEEEEEEEeCC
Confidence 75 345556777654
No 380
>1zxq_A ICAM-2, intercellular adhesion molecule-2; immunoglobulin fold, cell adhesion, glycoprotein, transmembr; HET: NAG; 2.20A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4
Probab=99.59 E-value=1.2e-13 Score=96.86 Aligned_cols=128 Identities=15% Similarity=0.231 Sum_probs=90.0
Q ss_pred CcceeecceeeeecCCcEEEEEEecCCCCCe-eEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEE
Q psy14540 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPH-ISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTA 81 (291)
Q Consensus 3 p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~-v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~ 81 (291)
..+.+.|....|..|+++.|+|+... +.+. +.|.- .+. +.. ...+..-..|.|.+++ |.|.|.|.+
T Consensus 3 f~v~v~P~~~~V~~G~S~~l~Cs~~c-~~p~~~glet---~l~--~~~-----~~~g~~w~~l~l~~vs--~~g~~~C~~ 69 (192)
T 1zxq_A 3 FEVHVRPKKLAVEPKGSLEVNCSTTC-NQPEVGGLET---SLN--KIL-----LDEQAQWKHYLVSNIS--HDTVLQCHF 69 (192)
T ss_dssp CCEEEESSEEEECTTEEEEEEEEESC-SSCSEEEEEC---SSE--EEE-----EEEETTEEEEEEEEEC--SCEEEEEEE
T ss_pred cEEEEeCCCcEEeCCCcEEEEEECCC-CCcccccccc---ccC--ceE-----EcCCCCeEEEEEeccc--cCCeeEEEE
Confidence 45677888899999999999999864 3343 44432 111 110 1123333568999998 789999999
Q ss_pred eCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCce--eEEeECCEecc
Q psy14540 82 TNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLT--ISWLKNGLPIL 149 (291)
Q Consensus 82 ~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~--~~W~~~~~~~~ 149 (291)
........+.+.++|+..|..+.... ....+.+|+.++|.|.+.+++|... +.|+++++.+.
T Consensus 70 ~c~~~~~~~~~~itVy~~P~~v~i~~------~p~~~~~G~~~tL~C~v~~v~P~~~L~v~llrG~~~l~ 133 (192)
T 1zxq_A 70 TCSGKQESMNSNVSVYQPPRQVILTL------QPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLH 133 (192)
T ss_dssp EETTEEEEEEEEEEECBCCCCCEEEE------ESSEECTTSEEEEEEEECSCBCGGGEEEEEEETTEEEE
T ss_pred ECCCcceEEEEEEEEEeCCCCceEcc------CCccccCCCcEEEEEEeCCeECCCCcEEEEEcCCEEee
Confidence 86555667888999998775441111 1135778999999999988888665 79999988774
No 381
>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1
Probab=99.59 E-value=1.5e-14 Score=108.28 Aligned_cols=144 Identities=16% Similarity=0.255 Sum_probs=83.0
Q ss_pred ceeecCCCceEEEEEeeCCCC--CceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCC
Q psy14540 115 SIKVHSGDRAGVQCLVTKGDP--PLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNH 192 (291)
Q Consensus 115 ~~~~~~g~~~~l~C~~~~~~p--~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~ 192 (291)
...+.+|+.++|.|.+ .+.| .+.+.|+++... ... .+.+........ . +.......
T Consensus 11 ~~~v~~G~~v~L~C~~-~g~p~~~~~v~W~k~~~~----~~~----------~~~~~~~~~~~~-~------~~~~~~~~ 68 (247)
T 2ghw_B 11 GGVVQPGKSLRLSCAA-SGFAFSSYAMHWVRQAPG----KGL----------EWVAVISYDGSN-K------YYADSVKG 68 (247)
T ss_dssp CEEECTTCCEEEEEEE-ESSCGGGSCEEEEEECTT----SCE----------EEEEEECTTSSC-E------EECTTTTT
T ss_pred CEEEecCCcEEEEEEe-ccccCCCceEEEEEeCCC----Cce----------EEEEEEecCCCc-e------eeCccccC
Confidence 4678899999999998 5665 578999984311 000 000000000000 0 00000001
Q ss_pred ceEEEE--eccceEEEEeeeecCCCeeEEEEeeeCC--ccCCceeEEEEecC---------------CCCCCCCccc-cc
Q psy14540 193 SSNLRV--NEYTSSLSIATLSTGHSGNYTCVASNTV--ASDNHSSNLRVNVP---------------PHIGPFTFGE-LM 252 (291)
Q Consensus 193 ~~~~~~--~~~~~~l~i~~~~~~~~g~y~C~~~~~~--~~~~~~~~l~v~~~---------------p~~~~~~~~~-~~ 252 (291)
.+.+.. .....+|.|.++..+|+|.|.|.+.|.. ........|.|..+ +.+...+... +.
T Consensus 69 r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 148 (247)
T 2ghw_B 69 RFTISRDNSKNTLYLQMNSLRAEDTAVYYCARDRSYYLDYWGQGTLVTVSSGGGGSGGGGSGGGGSETTLTQSPATLSLS 148 (247)
T ss_dssp TEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEETTEEEEECCCEEEEECSCC------------CCCCEEEECSEEEEC
T ss_pred cEEEEEeCCCCEEEEEECcCCHHHCEEEEEeeeccCCccccCCceEEEEecccccccccccCCCCcceEEEccCCEEEec
Confidence 111111 1224568888888888888888888762 22233456666643 2232223233 88
Q ss_pred CCceEEEEEEeecCCCCceEEEEE--CCEEc
Q psy14540 253 EGVRTQVACVVQSGDLPLSLQWYK--NGLAI 281 (291)
Q Consensus 253 ~g~~v~l~C~~~~~~p~~~v~W~~--~~~~l 281 (291)
+|+.++|.|.+ .+.|++.+.|+| +|..+
T Consensus 149 ~G~~v~L~C~~-~~~~~~~v~W~k~~~g~~~ 178 (247)
T 2ghw_B 149 PGERATLSCRA-SQSVRSNLAWYQQKPGQAP 178 (247)
T ss_dssp TTSCEEEEEEE-SSCCTTCEEEEEECTTSCC
T ss_pred CCCcEEEEEEe-CCCccceEEEEEECCCCCc
Confidence 99999999999 888888999999 55543
No 382
>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens}
Probab=99.59 E-value=8.3e-15 Score=91.74 Aligned_cols=84 Identities=29% Similarity=0.512 Sum_probs=69.4
Q ss_pred CCCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEE
Q psy14540 1 SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCT 80 (291)
Q Consensus 1 s~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~ 80 (291)
+++.|...|....+.+|+.+.|.|.+.+.|.+.+.|++++..+..... ..|.|.+++.+|+|.|+|.
T Consensus 2 ~~~~i~~~p~~~~v~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~-------------~~L~i~~v~~~d~G~Y~C~ 68 (91)
T 3bfo_A 2 SKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETK-------------KLYMVPYVDLEHQGTYWCH 68 (91)
T ss_dssp CCCEEEECCCCEEECTTSCEEEECEEECSSCCEEEEEETTEECTTCCS-------------SEEEESSCCGGGCEEEEEE
T ss_pred CceEEEECCCccEecCCCcEEEEEEeccCCCCEEEEEcCCeeCCcCCC-------------CeEEECCCCHHhCEEEEEE
Confidence 467888999999999999999999999989999999999988763210 2588999999999999999
Q ss_pred EeCCCCcee-eeeeEEEE
Q psy14540 81 ATNRVGSQT-HSADMRVY 97 (291)
Q Consensus 81 ~~~~~~~~~-~~~~l~v~ 97 (291)
+.+..|... ..+.+.|.
T Consensus 69 a~n~~g~~~s~~~~l~V~ 86 (91)
T 3bfo_A 69 VYNDRDSQDSKKVEIIID 86 (91)
T ss_dssp EECSSCEEECCCEEEEEC
T ss_pred EEcCCCCEEeeeEEEEEe
Confidence 998887533 44566654
No 383
>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A
Probab=99.59 E-value=1.6e-14 Score=92.70 Aligned_cols=89 Identities=24% Similarity=0.502 Sum_probs=72.1
Q ss_pred CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecC-CCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEE
Q psy14540 2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLA-GDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCT 80 (291)
Q Consensus 2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~ 80 (291)
||.|...+....+.+|++++|.|.+.+.+.+ +.|++++..+. ..++.. ......+.|.|.+++.+|+|.|+|.
T Consensus 8 pp~~~~~~~~~~v~~G~~v~l~C~~~~~p~~-v~W~k~~~~l~~~~~~~~-----~~~~~~~~L~I~~v~~~D~G~Y~C~ 81 (103)
T 2e7b_A 8 PVRFQEALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSL-----RQEGAMLELVVRNLRPQDSGRYSCS 81 (103)
T ss_dssp CCCCTBCCCCEEEESSSCEEEEEECSSCCCS-CEEEESSSBCCCSSSEEE-----EECSSEEEEEECSCCTTTCCCEEEE
T ss_pred CCEEEecCccEEEECCCcEEEEEEEeCCCCC-eEEEECCEECCCCCcEEE-----EEcCCEEEEEEccCCcccCEEEEEE
Confidence 7888888999999999999999999988878 99999998876 333333 2234457799999999999999998
Q ss_pred EeCCCCceeeeeeEEEEcCC
Q psy14540 81 ATNRVGSQTHSADMRVYDAP 100 (291)
Q Consensus 81 ~~~~~~~~~~~~~l~v~~~~ 100 (291)
.+.....+.|.|...|
T Consensus 82 ----~g~~~~~~~l~V~~~p 97 (103)
T 2e7b_A 82 ----FGDQTTSATLTVTALP 97 (103)
T ss_dssp ----CSSCBCCBCEEEECCC
T ss_pred ----ECCcEEEEEEEEEecc
Confidence 3556667788887765
No 384
>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}
Probab=99.59 E-value=5.4e-16 Score=115.17 Aligned_cols=145 Identities=14% Similarity=0.236 Sum_probs=69.4
Q ss_pred CcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCC
Q psy14540 113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNH 192 (291)
Q Consensus 113 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~ 192 (291)
+..+.+.+|+.++|.|.+ .+.|.+.+.|++++.... .. +.+........ + ...
T Consensus 30 p~~~~v~~G~~v~L~C~~-~~~~~~~v~W~~~~~~~~--~~------------~~~~~~~~~~~-----------~-~~~ 82 (233)
T 3bqu_C 30 PASLSMSIGEKVTIRCIT-STDIDDDMNWYQQKPGEP--PR------------LLISDGNTLRP-----------G-VPS 82 (233)
T ss_dssp CSBC-------CCEEEEE-EEEESSCEEEEEECTTSC--CE------------EEECTTSCBCT-----------T-SCT
T ss_pred CCeEEEecCCCEEEEEec-CCcCCCeEEEEEECCCCC--cE------------EEEEcCCccCC-----------C-CCc
Confidence 344678899999999998 566677899998532100 00 00000000000 0 000
Q ss_pred ceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCcc-CCceeEEEEec---CCCCCCCCcc-cccCCceEEEEEEeecCC
Q psy14540 193 SSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVAS-DNHSSNLRVNV---PPHIGPFTFG-ELMEGVRTQVACVVQSGD 267 (291)
Q Consensus 193 ~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~-~~~~~~l~v~~---~p~~~~~~~~-~~~~g~~v~l~C~~~~~~ 267 (291)
.+.+.......+|.|.++..+|+|.|.|.+.+..+. ......|.|.. +|.+...+.. ...+|+.++|.|.+.+..
T Consensus 83 r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~ 162 (233)
T 3bqu_C 83 RFSSSGYGTDFVFTIENMLSEDVADYYCLQSDNLPYTFGGGTNLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFY 162 (233)
T ss_dssp TCCCCEEEEEEEEC-----CCCCSEEEEEECSSSSCCBCCCCBC---CCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEB
T ss_pred cEEeeccCCEEEEEECCCCHHHCEEEEEEEecCCceeecCCEEEEEeCCCCCCEEEEeCCCHHhhcCCceEEEEEEcccc
Confidence 000001122447889999999999999999876542 22233455553 4555443322 245799999999994445
Q ss_pred CCc-eEEEEECCEEccCC
Q psy14540 268 LPL-SLQWYKNGLAISQP 284 (291)
Q Consensus 268 p~~-~v~W~~~~~~l~~~ 284 (291)
|++ .|.|+|||.++..+
T Consensus 163 p~~~~v~W~k~g~~~~~~ 180 (233)
T 3bqu_C 163 PKDINVKWKIDGSERQNG 180 (233)
T ss_dssp SSCEEEEEEEC-----CC
T ss_pred CCceEEEEEECCeeCCCC
Confidence 553 89999999988654
No 385
>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X
Probab=99.59 E-value=1.4e-14 Score=94.87 Aligned_cols=96 Identities=15% Similarity=0.161 Sum_probs=71.8
Q ss_pred CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCC-eeEeceEEe-ec-cceEEEEEEeecCCCCCeEEE
Q psy14540 2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGD-RFVMGQYMS-LH-GDVISHVNISSVRVEDSGIYQ 78 (291)
Q Consensus 2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~-~~~~~~~~~-~~-~~~~~~l~i~~~~~~d~G~y~ 78 (291)
||.|.+.. ...+..+.|.|.+.|.|.|.|+|+|||..+... +........ .. ......|.|.+++..|+|.|+
T Consensus 4 pP~I~l~~----~~~~~~~~l~c~v~G~P~P~I~W~knG~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Yt 79 (126)
T 1he7_A 4 PASVQLHT----AVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYT 79 (126)
T ss_dssp CCCCCCCC----CCCCCEEEEEEEECCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEE
T ss_pred CCEEEccC----CccCccEEEEEEEeeeCCCeEEEEECCEECCCCCceeEEEeeccccccccceEEEECcCCCCCCEEEE
Confidence 67763322 336789999999999999999999999998843 322211110 01 112467999999999999999
Q ss_pred EEEeCCCCceeeeeeEEEEcCCC
Q psy14540 79 CTATNRVGSQTHSADMRVYDAPG 101 (291)
Q Consensus 79 C~~~~~~~~~~~~~~l~v~~~~~ 101 (291)
|.+.|..|.....+.+.|...|.
T Consensus 80 C~A~N~~G~~~~t~~l~v~~~P~ 102 (126)
T 1he7_A 80 LLAANPFGQASASIMAAFMDNPF 102 (126)
T ss_dssp EEEEETTEEEEEEEEECCCSCTT
T ss_pred EEEEECCCeEEEEEEEEEEcCCC
Confidence 99999999999888888887664
No 386
>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H
Probab=99.59 E-value=1.6e-14 Score=108.67 Aligned_cols=143 Identities=16% Similarity=0.253 Sum_probs=87.7
Q ss_pred cceeecCCCceEEEEEeeCCCC--CceeEEeECC--EeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCC
Q psy14540 114 RSIKVHSGDRAGVQCLVTKGDP--PLTISWLKNG--LPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVAS 189 (291)
Q Consensus 114 ~~~~~~~g~~~~l~C~~~~~~p--~~~~~W~~~~--~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 189 (291)
....+.+|+.++|.|.+ .+.| .+.+.|++++ ..+. +.+..........+ ...
T Consensus 8 ~~~~v~~G~~v~L~C~~-~g~~~~~~~v~W~r~~~~~~~~----------------~l~~~~~~~~~~~~-------~~~ 63 (256)
T 1nqb_A 8 GAELVKPGASVKLSCKA-SGYTFTSYWMHWVKQRPGRGLE----------------WIGRIDPNSGGTKY-------NEK 63 (256)
T ss_dssp CCEEECTTCCEEEEEEE-CSSCGGGSCEEEEEEETTTEEE----------------EEEEECTTTCCEEE-------CGG
T ss_pred CCeeecCCCcEEEEEEe-ccccCCCceEEEEEECCCCCcE----------------EEEEEecCCCceee-------Ccc
Confidence 34678899999999998 5664 6799999842 1110 00000000000000 000
Q ss_pred CCCceEEEE--eccceEEEEeeeecCCCeeEEEEeeeCCcc-----CCceeEEEEecCCCCCCCCccc-ccCCceEEEEE
Q psy14540 190 DNHSSNLRV--NEYTSSLSIATLSTGHSGNYTCVASNTVAS-----DNHSSNLRVNVPPHIGPFTFGE-LMEGVRTQVAC 261 (291)
Q Consensus 190 ~~~~~~~~~--~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~-----~~~~~~l~v~~~p~~~~~~~~~-~~~g~~v~l~C 261 (291)
....+.+.. .....+|.|.++..+|+|.|.|.+.+..+. ......|.|..+|.+...+... +.+|+.++|.|
T Consensus 64 ~~~R~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~v~~~p~~~~v~~G~~v~L~C 143 (256)
T 1nqb_A 64 FKSKATLTVDKPSSTAYMQLSSLTSEDSAVYYCARYDYYGSSYFDYWGQGTTVTVSSDIELTQTPLSLPVSLGDQASISC 143 (256)
T ss_dssp GTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECCTTSSSSCSEECCCEEEEECCCCCEEEECSEEEECTTCCEEEEE
T ss_pred cCCeEEEEEecCCCEEEEEECcCChhhCEEEEEEEeeccCccceeEEcCceeeeecccccEEecCcEEEEecCCcEEEEe
Confidence 001111111 122467899999999999999999987542 2234577777777665544443 89999999999
Q ss_pred EeecCCCCc-----eEEEEE--CCEEc
Q psy14540 262 VVQSGDLPL-----SLQWYK--NGLAI 281 (291)
Q Consensus 262 ~~~~~~p~~-----~v~W~~--~~~~l 281 (291)
.+ .+.|++ .|.|+| +|..+
T Consensus 144 ~~-~~~~~~~~~~~~v~W~k~~~g~~~ 169 (256)
T 1nqb_A 144 RS-SQSIVHSNGNTYLEWYLQKPGQSP 169 (256)
T ss_dssp EE-SSCCBCTTSCBCEEEEEECTTSCE
T ss_pred Ee-cCcccccccceEEEEEEECCCCCc
Confidence 99 776654 999999 55543
No 387
>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus}
Probab=99.58 E-value=3.9e-14 Score=91.79 Aligned_cols=94 Identities=19% Similarity=0.270 Sum_probs=71.9
Q ss_pred CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCe-ecC-C-------CeeEeceEEeeccceEEEEEEeecCCC
Q psy14540 2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGY-PLA-G-------DRFVMGQYMSLHGDVISHVNISSVRVE 72 (291)
Q Consensus 2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~-~~~-~-------~~~~~~~~~~~~~~~~~~l~i~~~~~~ 72 (291)
+|.+...+....+.+|++++|.|.+.+.+.+.+.|++++. .+. . .++.. ........+|.|.+++.+
T Consensus 6 ~p~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~r~~~----~~~~~~~~~L~I~~v~~~ 81 (108)
T 3m45_A 6 SQGQFPLTQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIEL----VRASWHELSISVSDVSLS 81 (108)
T ss_dssp --CCCEECCCEEEETTSCEEEEEEESSCSSCCEEEECTTCCEEEETTEECSCCTTEEE----EEESSSEEEEEECSCCGG
T ss_pred CCCccccCCeeEEEeCCcEEEEeEEcCCCccEEEEEcCCCceEEEcCCcccccCcEEE----eecCCCcEEEEECCCChh
Confidence 5788888999999999999999999998888999999775 221 1 12221 111224578999999999
Q ss_pred CCeEEEEEEeCCCCceeeeeeEEEEcCC
Q psy14540 73 DSGIYQCTATNRVGSQTHSADMRVYDAP 100 (291)
Q Consensus 73 d~G~y~C~~~~~~~~~~~~~~l~v~~~~ 100 (291)
|+|.|+|.+.+ .+.....+.|.|..+|
T Consensus 82 D~G~Y~C~~~n-~~~~~~~~~L~V~~~P 108 (108)
T 3m45_A 82 DEGQYTCSLFT-MPVKTSKAYLTVLGVP 108 (108)
T ss_dssp GCEEEEEEECS-SSCEEEEEEEEEECCC
T ss_pred HCeEEEEEEEc-CCCcEEEEEEEEEcCC
Confidence 99999999998 7778888888887643
No 388
>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.58 E-value=8.4e-15 Score=94.56 Aligned_cols=90 Identities=18% Similarity=0.331 Sum_probs=71.2
Q ss_pred CCCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecC-CCeeEeceEEeeccceEEEEEEeecCCCCCeEEEE
Q psy14540 1 SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLA-GDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQC 79 (291)
Q Consensus 1 s~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C 79 (291)
.||.|...+.+..+.+|+++.|.|.+.+.+.+ +.|++++..+. ..++.+. .......|.|.+++.+|+|.|+|
T Consensus 7 ~~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~-v~W~k~g~~~~~~~~~~~~-----~~~~~~~L~I~~v~~~D~G~Y~C 80 (106)
T 2dlt_A 7 GQLEVLQDIADLTVKAAEQAVFKCEVSDEKVT-GKWYKNGVEVRPSKRITIS-----HVGRFHKLVIDDVRPEDEGDYTF 80 (106)
T ss_dssp CCCCEEECCCCEEEESSCCEECCCEESCSSCE-EEEEESSCBCCCCSSCEEE-----EETTEEEEEESSCCTTTCSCEEE
T ss_pred CCCEEecCCCCeEEeCCCeEEEEEEEcCCCcc-eEEEcCCEECcCCCCEEEE-----EeCCEEEEEECCCCcCCCEEEEE
Confidence 37889999999999999999999999987766 99999998876 3333321 22334679999999999999999
Q ss_pred EEeCCCCceeeeeeEEEEc
Q psy14540 80 TATNRVGSQTHSADMRVYD 98 (291)
Q Consensus 80 ~~~~~~~~~~~~~~l~v~~ 98 (291)
.+.|. .......|.|..
T Consensus 81 ~a~n~--~~~~~~~l~V~~ 97 (106)
T 2dlt_A 81 VPDGY--ALSLSAKLNFLE 97 (106)
T ss_dssp EEETS--CCCCCBCEEEEC
T ss_pred EEccC--CceEEEEEEEEE
Confidence 99976 444556666664
No 389
>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A
Probab=99.58 E-value=2.4e-14 Score=106.72 Aligned_cols=148 Identities=18% Similarity=0.325 Sum_probs=86.2
Q ss_pred CcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCC
Q psy14540 113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNH 192 (291)
Q Consensus 113 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~ 192 (291)
+..+.+.+|+.++|.|.+ .+ +.+.+.|++.... ..........+ .... .. ....+.|.-..
T Consensus 9 p~~v~v~~G~~v~L~C~~-~~-~~~~v~W~k~~~~--~~~~~~~~~~~--~~~~--~~--~~~~~r~~~~~--------- 69 (240)
T 3q5y_A 9 PRHIIKEKGGRSVLTCIP-IS-GHSNVVWYQQTLG--KELKFLIQHYE--KVER--DK--GFLPSRFSVQQ--------- 69 (240)
T ss_dssp CSEEEEETTCCEEEEEEC-CT-TCCEEEEEEECTT--SCCEEEEEEET--TEEE--EE--CSCCTTEEEEE---------
T ss_pred cceeeecCCCcEEEEEEe-CC-CCceEEEEEECCC--CCCEEEEEEcC--Cccc--cC--cccCCeEEEEe---------
Confidence 345778899999999998 44 7789999983211 00000000000 0000 00 00011121110
Q ss_pred ceEEEEeccceEEEEeeeecCCCeeEEEEeeeCC---ccCCceeEEEEe------cCCCCCCCCcc--cccCCceEEEEE
Q psy14540 193 SSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTV---ASDNHSSNLRVN------VPPHIGPFTFG--ELMEGVRTQVAC 261 (291)
Q Consensus 193 ~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~---~~~~~~~~l~v~------~~p~~~~~~~~--~~~~g~~v~l~C 261 (291)
-.....+|.|.++..+|+|.|.|.+.+.. ........|.|. .+|.+...... .+..|+.++|.|
T Consensus 70 -----~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~L~C 144 (240)
T 3q5y_A 70 -----FDDYHSEMNMSALELEDSAMYFCASSLRWGDEQYFGPGTRLTVLEDLRNVTPPKVSLFEPSKAEIANKQKATLVC 144 (240)
T ss_dssp -----CTTSCEEEEECSCCGGGCEEEEEEEESSTTBCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEE
T ss_pred -----CCCCEEEEEECcCChhHCEEEEEEEccCCCcceEEcCCEEEEEeccccCCCCCeeEEeCCchhhcccCCceEEEE
Confidence 01235679999999999999999997321 223344456665 24444332222 266799999999
Q ss_pred EeecCCCCc-eEEEEECCEEccCC
Q psy14540 262 VVQSGDLPL-SLQWYKNGLAISQP 284 (291)
Q Consensus 262 ~~~~~~p~~-~v~W~~~~~~l~~~ 284 (291)
.+.+++|++ .+.|++||.+|...
T Consensus 145 ~~~g~~P~~~~v~W~~~g~~l~~~ 168 (240)
T 3q5y_A 145 LARGFFPDHVELSWWVNGKEVHSG 168 (240)
T ss_dssp EEEEEBSSCEEEEEEETTEEECTT
T ss_pred EEeeEECCCeEEEEEECCEECcCc
Confidence 994446665 89999999998653
No 390
>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens}
Probab=99.58 E-value=2.3e-14 Score=90.49 Aligned_cols=86 Identities=16% Similarity=0.307 Sum_probs=67.6
Q ss_pred CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecC-CCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEE
Q psy14540 2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLA-GDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCT 80 (291)
Q Consensus 2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~ 80 (291)
+|.|...|....+.+|+.+.|.|.+ +.+.+.+.|++++..+. ..++.. ........|.|.+++.+|+|.|+|.
T Consensus 8 ~~~~~~~~~~~~v~~G~~v~l~C~~-~~p~~~v~W~k~~~~l~~~~~~~~-----~~~~~~~~L~I~~v~~~D~G~Y~C~ 81 (95)
T 2k1m_A 8 VSAFSKKPRSVEVAAGSPAVFEAET-ERAGVKVRWQRGGSDISASNKYGL-----ATEGTRHTLTVREVGPADQGSYAVI 81 (95)
T ss_dssp CCCCSBCCCCEEEETTSCEEEEEEC-SSSSCCCEEECSSSEECSSTTCEE-----EEETTEEEEEESSCCTTCCSEEEEE
T ss_pred CCeeEeCCCcEEEeCCCcEEEEEEe-CCCCCeEEEEECCEECCCCCcEEE-----EEcCCEEEEEEcCCCcccCEEEEEE
Confidence 4678888899999999999999999 67888999999998876 333332 1223356799999999999999999
Q ss_pred EeCCCCceeeeeeEEEE
Q psy14540 81 ATNRVGSQTHSADMRVY 97 (291)
Q Consensus 81 ~~~~~~~~~~~~~l~v~ 97 (291)
+ +.......|.|.
T Consensus 82 a----g~~~~~~~l~V~ 94 (95)
T 2k1m_A 82 A----GSSKVKFDLKVI 94 (95)
T ss_dssp E----TTEEEEEEEEEE
T ss_pred E----CCceEEEEEEEe
Confidence 9 445556666664
No 391
>1gxe_A Myosin binding protein C, cardiac-type; cytoskeleton, muscle, IGI, thick filament, immunoglobulin domain; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=99.58 E-value=6.5e-15 Score=99.21 Aligned_cols=84 Identities=21% Similarity=0.319 Sum_probs=67.2
Q ss_pred cceeeeecCCcEEEEEEecCCCCCeeEEEECC----------------------------eecC--CCeeEeceEEeecc
Q psy14540 9 FIQQTLQPGPPVSLKCIATGNPTPHISWKLDG----------------------------YPLA--GDRFVMGQYMSLHG 58 (291)
Q Consensus 9 ~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~----------------------------~~~~--~~~~~~~~~~~~~~ 58 (291)
|..+.+.+|++++|.|.+.+.|.|.+.|+|++ ..+. ..++.. ...
T Consensus 25 p~~~~v~~G~~v~L~C~~~G~P~P~i~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~r~~i-----~~~ 99 (139)
T 1gxe_A 25 PDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEGRVRV-----ETT 99 (139)
T ss_dssp CCEEEESSSSCCCCEEECCSBSCCEEEEEEECCCSCSSCCCCCCCCCCCCCCSSCCCCSCCCCCSCSSSCEE-----EEE
T ss_pred CCCEEEeCCCeEEEEEEEEEcCCCeEEEEECCcccccccccccccccccccccccccccceeecCCCCeEEE-----EeC
Confidence 56789999999999999999999999999988 3331 122211 122
Q ss_pred ceEEEEEEeecCCCCCeEEEEEEeCCCCceeeeeeEEEE
Q psy14540 59 DVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVY 97 (291)
Q Consensus 59 ~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~~~~~~l~v~ 97 (291)
...+.|.|.+++..|+|.|+|.+.|..|.....+.|.|.
T Consensus 100 ~~~s~L~I~~v~~~DsG~Y~C~A~N~~G~~~~~~~L~V~ 138 (139)
T 1gxe_A 100 KDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVI 138 (139)
T ss_dssp TTEEEEECSCCCTTTCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred CCEEEEEECCCCcccCEEEEEEEEeCCceEEEEEEEEEE
Confidence 335779999999999999999999999988888888775
No 392
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=99.58 E-value=4.8e-14 Score=92.29 Aligned_cols=92 Identities=27% Similarity=0.392 Sum_probs=68.7
Q ss_pred cCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCC
Q psy14540 111 SNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASD 190 (291)
Q Consensus 111 ~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~ 190 (291)
..+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+....++.+...
T Consensus 12 ~~~~~~~v~~G~~v~l~C~~-~g~p~p~i~W~k~~~~~~~~~~~~~~~~------------------------------- 59 (114)
T 2cqv_A 12 QFPEDQKVRAGESVELFGKV-TGTQPITCTWMKFRKQIQESEHMKVENS------------------------------- 59 (114)
T ss_dssp CCCCSEEEETTCCEEEEEEE-ESSSSCEEEEEESSSBCCCSSSEEEEEC-------------------------------
T ss_pred eCCCCeEEeCCCeEEEEEEE-EcCCCCEEEEEECCEECcCCCCEEEEEc-------------------------------
Confidence 34556788999999999999 6899999999999988765544332211
Q ss_pred CCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCCCC
Q psy14540 191 NHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHI 243 (291)
Q Consensus 191 ~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p~~ 243 (291)
.....|.|.++..+|+|.|+|.|.|..+.....+.|.|...|..
T Consensus 60 ---------~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~p~~ 103 (114)
T 2cqv_A 60 ---------ENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKPDP 103 (114)
T ss_dssp ---------SSEEEEEETTCCTTTCEEEEEEEECSSCEEECCEEEEEECSCSC
T ss_pred ---------CCEEEEEECCCChhcCEEEEEEEEECCCcEEEEEEEEEECCCCC
Confidence 11345777777788888888888888887777888888766543
No 393
>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1
Probab=99.58 E-value=2.5e-14 Score=107.81 Aligned_cols=139 Identities=18% Similarity=0.227 Sum_probs=81.6
Q ss_pred eeecCCCceEEEEEeeCCCC--CceeEEeECC--EeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCC
Q psy14540 116 IKVHSGDRAGVQCLVTKGDP--PLTISWLKNG--LPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDN 191 (291)
Q Consensus 116 ~~~~~g~~~~l~C~~~~~~p--~~~~~W~~~~--~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~ 191 (291)
..+.+|+.++|.|.+ .+.| .+.+.|++++ ... ... +... ......| . ....
T Consensus 10 ~~v~~G~~v~L~C~~-~g~p~~~~~v~W~k~~~g~~~----~~~----------~~~~---~~~~~~~-----~--~~~~ 64 (257)
T 1f3r_B 10 GLVRPSETLSLTCTV-SGFSLTSFSVSWVRHPSGKGP----EWM----------GRMW---YDGYTAY-----N--SALK 64 (257)
T ss_dssp SEECTTSEEEEEEEE-ESSCTTTSCCEEEEEETTSCC----EEE----------EEEC---SSSCEEE-----C--SSSS
T ss_pred ccccCCceEEEEEEE-ecccCCCccEEEEEeCCCCCc----EEE----------EEEe---cCCceee-----C--cccC
Confidence 568899999999999 4654 6899999853 111 000 0000 0000000 0 0000
Q ss_pred CceEEEE--eccceEEEEeeeecCCCeeEEEEeeeCCc---------cCCceeEEEEecCC---------------CCCC
Q psy14540 192 HSSNLRV--NEYTSSLSIATLSTGHSGNYTCVASNTVA---------SDNHSSNLRVNVPP---------------HIGP 245 (291)
Q Consensus 192 ~~~~~~~--~~~~~~l~i~~~~~~~~g~y~C~~~~~~~---------~~~~~~~l~v~~~p---------------~~~~ 245 (291)
..+.+.. .....+|.|.++..+|+|.|.|.+.|..+ .......|.|..+| .+..
T Consensus 65 ~R~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~ 144 (257)
T 1f3r_B 65 SRLSISRDTSKNQVFLKMNSLQTDDTGTYYCTRDLYGGYPLGFWYFDFWGPGTMVTVSSGGGGSGGGGSGGGGSDIKLTQ 144 (257)
T ss_dssp TTEEEEEETTTTEEEEEEESCCTTCCEEEEEEEESSSSCCSSCCCEEEECCCEEEEECSSCCSSCCSSSCCCCCEECSCE
T ss_pred CcEEEEEECCCCEEEEEECCCCcccCEEEEEEEcccccCccccccccccCCceEEEEEeCCccccccccCCCccceEEEc
Confidence 1111111 12245788888888888888888887643 11234466676543 2333
Q ss_pred CCccc-ccCCceEEEEEEeecCCCCceEEEEE--CCEE
Q psy14540 246 FTFGE-LMEGVRTQVACVVQSGDLPLSLQWYK--NGLA 280 (291)
Q Consensus 246 ~~~~~-~~~g~~v~l~C~~~~~~p~~~v~W~~--~~~~ 280 (291)
.+... +.+|+.++|.|.+ .+.|++.+.|+| +|..
T Consensus 145 ~p~~~~v~~G~~v~L~C~~-~~~~~~~v~W~k~~~g~~ 181 (257)
T 1f3r_B 145 SPSLLSASVGDRVTLSCKG-SQNINNYLAWYQQKLGEA 181 (257)
T ss_dssp ETSEECCCTTCCEEEEEEC-SSCCBTCEEEEEECTTSC
T ss_pred cCCEEEEcCCCCEEEEEEE-CCcCCCcEEEEEECCCCC
Confidence 23233 8899999999999 888888999999 5553
No 394
>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=6.1e-14 Score=90.24 Aligned_cols=89 Identities=15% Similarity=0.229 Sum_probs=71.3
Q ss_pred CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCC-----------eeEeceEEeeccceEEEEEEeecC
Q psy14540 2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGD-----------RFVMGQYMSLHGDVISHVNISSVR 70 (291)
Q Consensus 2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~l~i~~~~ 70 (291)
+|.|...+.+..+.+|+.+.|.|.+.+ .+.+.|+|||..+... ++.+ ..+...++|+|.+++
T Consensus 8 ~~~~~~~l~d~~v~eG~~a~f~C~vs~--~p~v~W~knG~~l~~~~~~~~~~~~~~r~~i-----~~~g~~~~L~I~~v~ 80 (112)
T 2e6q_A 8 TARLVAGLEDVQVYDGEDAVFSLDLST--IIQGTWFLNGEELKSNEPEGQVEPGALRYRI-----EQKGLQHRLILHAVK 80 (112)
T ss_dssp CCCEEECCCCEEEETTCEEEEEEEESS--CCCCEEEESSCBCCSSCCCTTSCTTSCEEEE-----CCBTTEEEEEEESCC
T ss_pred CcEEecCCCCeEEcCCCcEEEEEEECC--CCeEEEEECCEECccCcccccccccccEEEE-----EeCCcEEEEEECCCC
Confidence 568889999999999999999999986 7789999999999733 3333 233446789999999
Q ss_pred CCCCeEEEEEEeCCCCceeeeeeEEEEcCC
Q psy14540 71 VEDSGIYQCTATNRVGSQTHSADMRVYDAP 100 (291)
Q Consensus 71 ~~d~G~y~C~~~~~~~~~~~~~~l~v~~~~ 100 (291)
.+|+|.|+|...+ ....+..|.|...|
T Consensus 81 ~~D~G~Y~~~~~~---~~~ssA~L~V~~~p 107 (112)
T 2e6q_A 81 HQDSGALVGFSCP---GVQDSAALTIQESS 107 (112)
T ss_dssp STTCSEEEEEEET---TEEEEEEEEEECSS
T ss_pred HHHCccEEEEEEC---CeeEEEEEEEeCCC
Confidence 9999999885542 34567889998765
No 395
>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A
Probab=99.58 E-value=3e-14 Score=104.27 Aligned_cols=145 Identities=23% Similarity=0.406 Sum_probs=87.7
Q ss_pred CcceeecCCCceEEEEEeeCC------CCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEec
Q psy14540 113 SRSIKVHSGDRAGVQCLVTKG------DPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNT 186 (291)
Q Consensus 113 ~~~~~~~~g~~~~l~C~~~~~------~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~ 186 (291)
+..+.+.+|+.++|.|.+... .+.+.+.|++++............ ... ........+.+.-..
T Consensus 7 p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~-~~~-------~~~~~~~~~r~~~~~--- 75 (214)
T 2zg1_A 7 QKSVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATN-NPD-------RRVKPETQGRFRLLG--- 75 (214)
T ss_dssp CSEEEEETTCCEEECCEEECCCCCCSCCCCEEEEEEETTCCGGGCCBSEES-CTT-------SCBCTTTTTTEEECS---
T ss_pred CcEEEEecCccEEEeeeeecCCcccCCCCceEEEEEecCCCCcccceEecC-Ccc-------cccCccccCceEEec---
Confidence 345778899999999998532 257899999987532111000000 000 000001111111000
Q ss_pred CCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCcc----CCceeEEEEecC---CCCCCCCcccccCCceEEE
Q psy14540 187 VASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVAS----DNHSSNLRVNVP---PHIGPFTFGELMEGVRTQV 259 (291)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~----~~~~~~l~v~~~---p~~~~~~~~~~~~g~~v~l 259 (291)
.......+|.|.++..+|+|.|.|.+.+..+. ....+.|.|..+ |.+... ..+.+|+.++|
T Consensus 76 ----------~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~--~~~~~G~~v~L 143 (214)
T 2zg1_A 76 ----------DVQKKNCSLSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHFL--EPLESGRPTRL 143 (214)
T ss_dssp ----------CGGGTBCCEEECSCCGGGCEEEEEEEEETTTEEEECCSSCEEEEEECCCCCCEEC----CCCCTTCCEEE
T ss_pred ----------cCCCCeEEEEEccCCHhhCceEEEEEEcCCCceeeecCCceEEEEecCCCCCceecC--ccccCCCeEEE
Confidence 00112457999999999999999999887521 235677888764 344332 12779999999
Q ss_pred EEEeecC----CCCceEEEEECCEEc
Q psy14540 260 ACVVQSG----DLPLSLQWYKNGLAI 281 (291)
Q Consensus 260 ~C~~~~~----~p~~~v~W~~~~~~l 281 (291)
.|.+ .+ .|+|.+.|++++..+
T Consensus 144 ~C~~-~~~~~~~p~p~v~W~~~~~~~ 168 (214)
T 2zg1_A 144 SCSL-PGSCEAGPPLTFSWTGNALSP 168 (214)
T ss_dssp EEEC-TTCCSCSSCCEEEEESSTTSS
T ss_pred EEEe-ccCCCCCCCceEEEeCCCCcc
Confidence 9999 54 478999999998654
No 396
>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...
Probab=99.58 E-value=6.3e-15 Score=107.60 Aligned_cols=142 Identities=15% Similarity=0.233 Sum_probs=84.4
Q ss_pred cceeecCCCceEEEEEeeCCCC--CceeEEeECC--EeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCC
Q psy14540 114 RSIKVHSGDRAGVQCLVTKGDP--PLTISWLKNG--LPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVAS 189 (291)
Q Consensus 114 ~~~~~~~g~~~~l~C~~~~~~p--~~~~~W~~~~--~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 189 (291)
....+.+|+.++|.|.+ .+.+ .+.+.|++++ ... .+.+.... .....+ .. .
T Consensus 8 ~~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~r~~~g~~~----------------~~~~~~~~-~~~~~~-----~~-~- 62 (210)
T 3d9a_H 8 GPSLVKPSQTLSLTCSV-TGDSITSDYWSWIRKFPGNRL----------------EYMGYVSY-SGSTYY-----NP-S- 62 (210)
T ss_dssp SCSEECTTSCEEEEEEE-ESSCGGGSCEEEEEEETTTEE----------------EEEEEECT-TSCEEE-----CG-G-
T ss_pred CCEEecCCCcEEEEEEE-ecccCCCCcEEEEEeCCCCCc----------------EEEEEEcC-CCCeEE-----Cc-c-
Confidence 34578899999999999 4554 4789999853 111 00000000 000000 00 0
Q ss_pred CCCceEEEE--eccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEec----CCCCCCCC-cccccCCceEEEEEE
Q psy14540 190 DNHSSNLRV--NEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNV----PPHIGPFT-FGELMEGVRTQVACV 262 (291)
Q Consensus 190 ~~~~~~~~~--~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~----~p~~~~~~-~~~~~~g~~v~l~C~ 262 (291)
....+.+.. .....+|.|.++..+|+|.|.|.+.+.. .......|.|.. +|.+...+ ...+.+|+.++|.|.
T Consensus 63 ~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~-~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~ 141 (210)
T 3d9a_H 63 LKSRISITRDTSKNQYYLDLNSVTTEDTATYYCANWDGD-YWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCL 141 (210)
T ss_dssp GTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEETTSS-CBCCCEEEEECCCCCBCCEEEEECCTTSCCCSSEEEEEEE
T ss_pred cCceEEEEecCCCCEEEEEECCCCcccCEEEEEEEecCc-ccccceEEEeccCCCCCCEEEEecCCcccccCCcEEEEEE
Confidence 001111211 1124579999999999999999998864 222335666653 34443322 223679999999999
Q ss_pred eecCCCCc-eEEEEECCEEc
Q psy14540 263 VQSGDLPL-SLQWYKNGLAI 281 (291)
Q Consensus 263 ~~~~~p~~-~v~W~~~~~~l 281 (291)
+.+..|.| .|.|+++|..+
T Consensus 142 ~~g~~P~p~~v~W~~~~~~~ 161 (210)
T 3d9a_H 142 VKGYFPEPVTVTWNSGSLSS 161 (210)
T ss_dssp EEEEBSSCCEEEEGGGTBCT
T ss_pred EeeEecCCcEEEEeeCCccc
Confidence 94444877 99999998764
No 397
>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}
Probab=99.57 E-value=5.2e-15 Score=108.99 Aligned_cols=142 Identities=18% Similarity=0.314 Sum_probs=85.6
Q ss_pred eeecCCCceEEEEEeeCCCCC-----ceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCC
Q psy14540 116 IKVHSGDRAGVQCLVTKGDPP-----LTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASD 190 (291)
Q Consensus 116 ~~~~~g~~~~l~C~~~~~~p~-----~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~ 190 (291)
+.+.+|+.++|.|.+ .+.|. +.+.|++++.... ......+ .. . .....+.+... ..
T Consensus 5 v~~~~G~~v~L~C~~-~~~~~~~~~~~~v~W~~~~~~~~----i~~~~~~--~~-~-----~~~~~~r~~~~----~~-- 65 (222)
T 4i0k_A 5 VVALVDTDATLRCSF-SPEPGFSLAQLNLIWQLTDTKQL----VHSFTEG--RD-Q-----GSAYSNRTALF----PD-- 65 (222)
T ss_dssp CCCCTTSCEEECCBC-CCCTTCCTTTEEEEEEETTTCCE----EEEEETT--EE-E-----EESSCSCEECC----TT--
T ss_pred EEEECCCCeEEEEEe-cCCCCCCCCceEEEEEECCCccE----EEEEcCC--cc-c-----ccceeCcEEEe----cc--
Confidence 567899999999998 45543 7899999764321 0000000 00 0 00000000000 00
Q ss_pred CCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecC---CCCCCCCcccccCCceEEEEEEeecCC
Q psy14540 191 NHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVP---PHIGPFTFGELMEGVRTQVACVVQSGD 267 (291)
Q Consensus 191 ~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~---p~~~~~~~~~~~~g~~v~l~C~~~~~~ 267 (291)
.......+|.|.++..+|+|.|+|.+.+.. ..+..+.|.|..+ |.+...+...+.+|+.++|.|.+..+.
T Consensus 66 ------~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~-~~~~~~~l~V~~~~~~p~i~~~~~~~v~~G~~~~l~C~~~~g~ 138 (222)
T 4i0k_A 66 ------LLVQGNASLRLQRVRVTDEGSYTCFVSIQD-FDSAAVSLQVAAPYSKPSMTLEPNKDLRPGNMVTITCSSYQGY 138 (222)
T ss_dssp ------TGGGTBCCEEECSCCGGGCSCEEEEEEECC-CCCCCCCCCCCBCCCCCEEECCC-----CCSEEEEEEEEEEEB
T ss_pred ------cccCCeEEEEECCcccccCEEEEEEEEeCC-CceEEEEEEEEcCCCCCcEEeCCCceecCCceEEEEEeccccc
Confidence 001125679999999999999999999863 4455666666654 444444444478999999999997788
Q ss_pred CCceEEEEE-CCEEccC
Q psy14540 268 LPLSLQWYK-NGLAISQ 283 (291)
Q Consensus 268 p~~~v~W~~-~~~~l~~ 283 (291)
|.+.+.|++ ++..+..
T Consensus 139 P~~~v~W~~~~~~~~~~ 155 (222)
T 4i0k_A 139 PEAEVFWKDGQGVPLTG 155 (222)
T ss_dssp SCCEEEEECTTSCBCCS
T ss_pred CCCeEEEEcCCCccCCC
Confidence 999999999 5555543
No 398
>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*
Probab=99.57 E-value=4e-14 Score=106.21 Aligned_cols=138 Identities=18% Similarity=0.286 Sum_probs=82.7
Q ss_pred CCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCC
Q psy14540 112 NSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDN 191 (291)
Q Consensus 112 ~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~ 191 (291)
.+..+.+.+|+.++|.|.+ .+.|.+.+.|+++.... .......... .. .....+.|
T Consensus 10 ~p~~~~v~~G~~v~L~C~~-~~~~~~~i~W~k~~~~~--~~~~l~~~~~--~~-------~~~~~~r~------------ 65 (250)
T 3esu_F 10 STSSLSASLGDRVTISCRA-SQDIRNYLNWYQQKPDG--TVKLLIYYTS--RL-------QSGVPSRF------------ 65 (250)
T ss_dssp SCSEEEECTTCCEEEEEEE-SSCCTTCEEEEEECTTS--CEEEEEETTT--EE-------CTTCCTTE------------
T ss_pred cCCEEEeeCCCcEEEEEEe-cccCCceEEEEEECCCC--CCEEEEEEeC--CC-------CCCCCCCE------------
Confidence 3455778899999999999 68888899999853110 0000000000 00 00011112
Q ss_pred CceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCcc-CCceeEEEEecC--------------------CCCCCCCccc
Q psy14540 192 HSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVAS-DNHSSNLRVNVP--------------------PHIGPFTFGE 250 (291)
Q Consensus 192 ~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~-~~~~~~l~v~~~--------------------p~~~~~~~~~ 250 (291)
.+.......+|.|.++..+|+|.|.|.+.|..+. ......|.|..+ +.+..+....
T Consensus 66 ---~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (250)
T 3esu_F 66 ---SGSGSGTDYSLTISNLEQEDIGTYFCQQGNTLPWTFGGGTKLEIRRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPEL 142 (250)
T ss_dssp ---EEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC------------------------CEECCCEE
T ss_pred ---EEeCCCCEEEEEEccCChhhCEEEEEEEeeCCCceECCCEEEEEECCCCcccccccccccccCcccceEEecCCceE
Confidence 1222233457888888888888888888876532 223345556543 1222223333
Q ss_pred ccCCceEEEEEEeecCCC--CceEEEEEC
Q psy14540 251 LMEGVRTQVACVVQSGDL--PLSLQWYKN 277 (291)
Q Consensus 251 ~~~g~~v~l~C~~~~~~p--~~~v~W~~~ 277 (291)
+.+|+.++|.|.+ .+.| .+.+.|+|+
T Consensus 143 v~~G~~v~L~C~~-~~~~~~~~~v~W~k~ 170 (250)
T 3esu_F 143 VKPGASVKISCKD-SGYAFSSSWMNWVKQ 170 (250)
T ss_dssp ECTTCCEEEEEEC-CSTTGGGSEEEEEEE
T ss_pred EcCCceEEEEEEe-cCCcccCCEEEEEEE
Confidence 8999999999999 7766 689999997
No 399
>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens}
Probab=99.57 E-value=1.3e-14 Score=110.71 Aligned_cols=144 Identities=15% Similarity=0.257 Sum_probs=87.3
Q ss_pred CcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEee------CCCCCceeEEEEEEec
Q psy14540 113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIAT------LSTGHSGNYTCVASNT 186 (291)
Q Consensus 113 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~------~~~~d~g~y~C~~~~~ 186 (291)
+..+.+.+|+.++|.|.+ .+.+.+.+.|++++..- ..... +.... ......+.|.
T Consensus 31 p~~v~v~~G~~v~L~C~~-~~~~~~~v~W~r~~~~~--~~~~~----------~~~~~~~~~~~~~~~~~~R~~------ 91 (279)
T 2wbj_D 31 PSWVISKSGTSVKIECRS-LDFQATTMFWYRQFPKQ--SLMLM----------ATSNEGSKATYEQGVEKDKFL------ 91 (279)
T ss_dssp CSEEEEETTSCEEEEEEE-SSSCEEEEEEEEECSSS--CCEEE----------EEEESSSCCCCCSSSCSSSEE------
T ss_pred CCeEEecCCCeEEEEEEe-CCCCCCeEEEEEeCCCC--CeEEE----------EEEecCCcceecCCccCCcEE------
Confidence 345778899999999999 57788899999864210 00000 00000 0000011121
Q ss_pred CCCCCCceEEEE-eccceEEEEeeeecCCCeeEEEEeeeCCc------cCCceeEEEEec------CCCCCCCCcc--cc
Q psy14540 187 VASDNHSSNLRV-NEYTSSLSIATLSTGHSGNYTCVASNTVA------SDNHSSNLRVNV------PPHIGPFTFG--EL 251 (291)
Q Consensus 187 ~~~~~~~~~~~~-~~~~~~l~i~~~~~~~~g~y~C~~~~~~~------~~~~~~~l~v~~------~p~~~~~~~~--~~ 251 (291)
+.. .....+|.|.++..+|+|.|.|.+.+..+ .......|.|.. +|.+...... .+
T Consensus 92 ---------~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~ 162 (279)
T 2wbj_D 92 ---------INHASLTLSTLTVTSAHPEDSSFYICSARDLTSGANNEQFFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEI 162 (279)
T ss_dssp ---------EEECSSSEEEEEESSCCGGGCEEEEEEEEETTCBTSCCEEECCCEEEEEESCGGGCBCCEEEEEECCHHHH
T ss_pred ---------EEeCCCCEEEEEEccCCccCCEEEEEEEcccccCCccceeeCCCEEEEEecCCCCCCCCEEEEECCCcccc
Confidence 111 12245788899999999999999988421 112334566654 4444332221 15
Q ss_pred cCCceEEEEEEeecCCCC-ceEEEEECCEEccCC
Q psy14540 252 MEGVRTQVACVVQSGDLP-LSLQWYKNGLAISQP 284 (291)
Q Consensus 252 ~~g~~v~l~C~~~~~~p~-~~v~W~~~~~~l~~~ 284 (291)
.+|+.++|.|.+.+.+|+ +.|.|++||+++..+
T Consensus 163 ~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~ 196 (279)
T 2wbj_D 163 SHTQKATLVCLATGFYPDHVELSWWVNGKEVHSG 196 (279)
T ss_dssp HHHSCCEEEEEEEEEBSSCEEEEEEETTEECCTT
T ss_pred cCCCceEEEEEEeeEcCCCcEEEEEECCEECCCC
Confidence 579999999999444464 799999999988643
No 400
>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...
Probab=99.57 E-value=1.6e-14 Score=106.35 Aligned_cols=81 Identities=17% Similarity=0.283 Sum_probs=57.7
Q ss_pred ceEEEEeeeecCCCeeEEEEeeeCCc-----cCCceeEEEEec----CCCCCCCCc-ccccCCceEEEEEEeecCCCCc-
Q psy14540 202 TSSLSIATLSTGHSGNYTCVASNTVA-----SDNHSSNLRVNV----PPHIGPFTF-GELMEGVRTQVACVVQSGDLPL- 270 (291)
Q Consensus 202 ~~~l~i~~~~~~~~g~y~C~~~~~~~-----~~~~~~~l~v~~----~p~~~~~~~-~~~~~g~~v~l~C~~~~~~p~~- 270 (291)
...|.|.++...|+|.|.|.+.+..+ .......|.|.. +|.+..... ..+.+|+.++|.|.+.+..|.|
T Consensus 80 ~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~ 159 (222)
T 1q9r_B 80 ILYLQMNTLRAEDSATYYCARDHDGYYERFSYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPV 159 (222)
T ss_dssp EEEEEECSCCGGGCEEEEEEECCCSSCCSCCCBCCCEEEEECSSCCBCCEEEEECCCSCCCCSSEEEEEEEEEEEBSSCC
T ss_pred eEEEEECcCCcccCeEEEEEEeccCCcccceEeCCceEEEeccCCCCCCeEEEccccccccCCCcEEEEEEEccEECCCC
Confidence 45789999999999999999988653 222345666654 343333222 2267899999999994445877
Q ss_pred eEEEEECCEEcc
Q psy14540 271 SLQWYKNGLAIS 282 (291)
Q Consensus 271 ~v~W~~~~~~l~ 282 (291)
.|.|+++|..+.
T Consensus 160 ~v~W~~~g~~~~ 171 (222)
T 1q9r_B 160 TVTWNSGSLSSG 171 (222)
T ss_dssp EEEEGGGTBCTT
T ss_pred EEEEecCCeEcc
Confidence 999999998763
No 401
>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}
Probab=99.57 E-value=2.2e-14 Score=101.81 Aligned_cols=135 Identities=14% Similarity=0.207 Sum_probs=85.4
Q ss_pred cceeecCCCceEEEEEeeCCCCCceeEEeEC-CEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCC
Q psy14540 114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKN-GLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNH 192 (291)
Q Consensus 114 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~-~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~ 192 (291)
..+.+.+|+.++|.|.+....+.+.+.|+++ +..+. .+. .+. . ... ......+.+
T Consensus 7 ~~v~v~~G~~vtL~c~~~~~~~~~~i~W~k~~~~~i~-----~~~-~~~-~--~~~--~~~~~~~R~------------- 62 (180)
T 2dru_A 7 PNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKIL-----EYF-PNG-K--KTV--FESVFKDRV------------- 62 (180)
T ss_dssp CEEEEETTSCEEECCCSSCCCSCSEEEEESSSSCEEE-----EEC-SSS-C--EEE--CSSTTTTTE-------------
T ss_pred ceEEEEeCCCEEEeCCCCCCCceeEEEEEecCCeEEE-----EEE-CCC-C--eeE--cchhcCCeE-------------
Confidence 3467889999999999733344689999985 22211 000 000 0 000 000000111
Q ss_pred ceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCCCCCCCCcccccCCceEEEEEEeecCCCCceE
Q psy14540 193 SSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGPFTFGELMEGVRTQVACVVQSGDLPLSL 272 (291)
Q Consensus 193 ~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~g~~v~l~C~~~~~~p~~~v 272 (291)
.+.....+|.|.+++..|+|.|+|.+.+.. .....+.|.|..++.. + .....+..++|+|.+..+ |.|.|
T Consensus 63 ----~l~~~~~sL~I~~v~~~D~G~Y~C~v~~~~-~~~~~~~L~V~~~~~~---P-~i~~~~~~v~L~C~~~~g-p~p~i 132 (180)
T 2dru_A 63 ----DLDKTNGALRIYNVSKEDRGDYYMRMLHET-EDQWKITMEVYEMVSK---P-MIYWECSNATLTCEVLEG-TDVEL 132 (180)
T ss_dssp ----EECTTTCCEEECSCCGGGCEEEEEEEESSS-EEEEEEEEEEECCCCC---C-EEEEEGGGTEEEEECSSC-TTCEE
T ss_pred ----EEeCCCccEEEcCCCHHHCeEEEEEEEcCC-eEEEEEEEEEECCCCC---C-EEEecCCCEEEEEEeCCC-CCCEE
Confidence 112345689999999999999999998766 5566777888764321 1 112245679999999555 88999
Q ss_pred EEEECCEEcc
Q psy14540 273 QWYKNGLAIS 282 (291)
Q Consensus 273 ~W~~~~~~l~ 282 (291)
.|+++|..|+
T Consensus 133 ~W~~~~~~l~ 142 (180)
T 2dru_A 133 KLYQGKEHLR 142 (180)
T ss_dssp EEEETTEEEE
T ss_pred EEEECCeECc
Confidence 9999999885
No 402
>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1
Probab=99.56 E-value=3.1e-14 Score=106.15 Aligned_cols=137 Identities=17% Similarity=0.183 Sum_probs=85.6
Q ss_pred CcceeecCCCceEEEEEeeCCCC----CceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCC
Q psy14540 113 SRSIKVHSGDRAGVQCLVTKGDP----PLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVA 188 (291)
Q Consensus 113 ~~~~~~~~g~~~~l~C~~~~~~p----~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~ 188 (291)
+....+.+|+.++|.|.+ .+.| .+.+.|+++.... ... +.+.... . ...
T Consensus 8 p~~~~v~~G~~v~L~C~~-~~~~~~~~~~~i~W~k~~~~~--~~~------------~~~~~~~-----~-------~~~ 60 (240)
T 1moe_A 8 PASLAVSLGQRATMSCRA-GESVDIFGVGFLHWYQQKPGQ--PPK------------LLIYRAS-----N-------LES 60 (240)
T ss_dssp CSEEEECTTSCEEEEEEE-SSCCEETTEECEEEEEECTTS--CCE------------EEEETTT-----E-------ECT
T ss_pred CCeEEecCCCCEEEEEeC-CCccccCCCceEEEEEECCCC--Cce------------EEEEEec-----c-------cCc
Confidence 345778899999999999 6776 7899999853110 000 0000000 0 000
Q ss_pred CCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCcc-CCceeEEEEecCC-----CCCC--CCcccccCCceEEEE
Q psy14540 189 SDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVAS-DNHSSNLRVNVPP-----HIGP--FTFGELMEGVRTQVA 260 (291)
Q Consensus 189 ~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~-~~~~~~l~v~~~p-----~~~~--~~~~~~~~g~~v~l~ 260 (291)
.....+.+.......+|.|.++..+|+|.|.|.+.|..+. ......|.|..++ .+.. +....+.+|+.++|.
T Consensus 61 ~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~ 140 (240)
T 1moe_A 61 GIPVRFSGTGSRTDFTLIIDPVEADDVATYYCQQTNEDPYTFGGGTKLEIKGGGSGGGGEVQLQQSGAELVEPGASVKLS 140 (240)
T ss_dssp TCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCCBCCCEEEEECCCSCCCCCCCEEEECCCEEECTTCCEEEE
T ss_pred CCCccEEEEecCCeEEEEEcCCChhhCEEEEEEEccCCceeecCCEEEEEecCCCCCCceEEEeCCCceEEeCCCcEEEE
Confidence 0011122222233557999999999999999999987643 4455677776643 2211 122238899999999
Q ss_pred EEeecCCC--CceEEEEEC
Q psy14540 261 CVVQSGDL--PLSLQWYKN 277 (291)
Q Consensus 261 C~~~~~~p--~~~v~W~~~ 277 (291)
|.+ .+.| .+.+.|+|+
T Consensus 141 C~~-~g~p~~~~~v~W~k~ 158 (240)
T 1moe_A 141 CTA-SGFNIKDTYMHWVKQ 158 (240)
T ss_dssp EEE-ESSCGGGSCEEEEEE
T ss_pred EEE-cCccCCCCEEEEEEE
Confidence 999 6666 369999996
No 403
>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens}
Probab=99.56 E-value=6.7e-14 Score=91.41 Aligned_cols=88 Identities=22% Similarity=0.376 Sum_probs=70.9
Q ss_pred CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecC-CCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEE
Q psy14540 2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLA-GDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCT 80 (291)
Q Consensus 2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~ 80 (291)
||.|...+....+.+|+++.|.|.+.+. +.+.|++++..+. ..++.+. .....+.|.|.+++.+|+|.|+|.
T Consensus 19 pp~~~~~~~~~~v~~G~~v~l~C~~~~~--p~v~W~k~~~~l~~~~~~~~~-----~~~~~~~L~I~~v~~~D~G~Y~C~ 91 (113)
T 2edh_A 19 PIKFTEGLRNEEATEGATAVLRCELSKM--APVEWWKGHETLRDGDRHSLR-----QDGARCELQIRGLVAEDAGEYLCM 91 (113)
T ss_dssp CCCEEECCCCCEECTTSCEEEEEEESSC--CCCEEEESSSBCCCSSSEEEE-----EETTEEEEEECSCCSTTCEEEEEE
T ss_pred CCcccccCCceEEeCCCeEEEEEEECCC--CcEEEEECCEECCCCCcEEEE-----ECCCEEEEEECCCChhhCEEEEEE
Confidence 5688888888999999999999999764 6899999998887 3444332 223356799999999999999999
Q ss_pred EeCCCCceeeeeeEEEEcCC
Q psy14540 81 ATNRVGSQTHSADMRVYDAP 100 (291)
Q Consensus 81 ~~~~~~~~~~~~~l~v~~~~ 100 (291)
+ +.......|.|...|
T Consensus 92 a----~~~~~~~~l~V~~~p 107 (113)
T 2edh_A 92 C----GKERTSAMLTVRAMP 107 (113)
T ss_dssp E----TTEEEEEEEEECCCC
T ss_pred e----CCCCEEEEEEEeCCC
Confidence 9 567777888887765
No 404
>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=99.56 E-value=5e-14 Score=90.27 Aligned_cols=86 Identities=15% Similarity=0.302 Sum_probs=66.0
Q ss_pred CCcceeecce-eeeecCCcEEEEEEecCCCCCeeEEEECCeecCC--CeeEeceEEeeccceEEEEEEeecCCCCCeEEE
Q psy14540 2 HPQLIYKFIQ-QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAG--DRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQ 78 (291)
Q Consensus 2 ~p~~~~~~~~-~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~ 78 (291)
+|.|+..+.+ ..+.+|+++.|.|.+ +.|.+.+.|+++|..+.. .++... .......|.|.+++.+|+|.|+
T Consensus 15 ~p~f~~~~~~~~~v~~G~~v~L~C~~-~~p~~~v~W~k~g~~l~~~~~~~~~~-----~~~~~~~L~I~~v~~~D~G~Y~ 88 (104)
T 1pd6_A 15 STAFQKKLEPAYQVSKGHKIRLTVEL-ADHDAEVKWLKNGQEIQMSGSKYIFE-----SIGAKRTLTISQCSLADDAAYQ 88 (104)
T ss_dssp TSSCSEECCSEEEEETTSCEEEEEEC-SSSSSCCEEEESSSEECCCSSSSEEE-----EETTEEEEEECSCSSSSCEEEE
T ss_pred CCEEEEcCCCcEEEecCCCEEEEEEE-cCCCCEEEEEECCEECCCCCCeEEEE-----ecCCEEEEEECCCCcccCEEEE
Confidence 6788887777 789999999999999 678888999999998873 333321 1233567999999999999999
Q ss_pred EEEeCCCCceeeeeeEEEE
Q psy14540 79 CTATNRVGSQTHSADMRVY 97 (291)
Q Consensus 79 C~~~~~~~~~~~~~~l~v~ 97 (291)
|.+. .......|.|.
T Consensus 89 C~a~----~~~~~~~l~V~ 103 (104)
T 1pd6_A 89 CVVG----GEKCSTELFVK 103 (104)
T ss_dssp EEET----TEEECCEEEEE
T ss_pred EEEC----CCcEEEEEEEe
Confidence 9994 34445555553
No 405
>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4
Probab=99.56 E-value=2.3e-15 Score=114.24 Aligned_cols=130 Identities=11% Similarity=0.186 Sum_probs=54.9
Q ss_pred eecceeeeecCCcEEEEEEecC-CCCC--eeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeC
Q psy14540 7 YKFIQQTLQPGPPVSLKCIATG-NPTP--HISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATN 83 (291)
Q Consensus 7 ~~~~~~~v~~g~~v~l~C~~~~-~~~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~ 83 (291)
+.+....+.+|+.++|.|.+.+ .|.. .|+|+|+++.+..... .......+|.+.....+|.+.|+|++.+
T Consensus 91 I~~~~~~~~~G~~~~LtC~v~g~~P~~~l~itW~kg~~~l~~~~~-------~~~~~~~~l~~~~~~~D~g~~~~C~A~~ 163 (291)
T 1mq8_A 91 LAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPA-------VGEPAEVTTTVLVRRDHHGANFSCRTEL 163 (291)
T ss_dssp BCCCCSBCCSSCCCEEEEEECCCBSTTTEEEEEESSSSEEEEEEC-------CBTTEEEEEECCCSSSCSSCEEEEEEEE
T ss_pred EecCCccccCCCCEEEEEEecCccCCCCcEEEEEECCEEeecccC-------CCCCceEEEEeeeeeccCCceEEEEEEe
Confidence 3344445889999999999987 4443 5899999987763221 1122335566666666666799999996
Q ss_pred CCCc--------eeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCC-CC--ceeEEeECCEeccC
Q psy14540 84 RVGS--------QTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGD-PP--LTISWLKNGLPILS 150 (291)
Q Consensus 84 ~~~~--------~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~-p~--~~~~W~~~~~~~~~ 150 (291)
..+. .+....|.|+..|... ... ..+ ..+.+|+.++|.|.+ .|. |. ..+.|+++|+.+..
T Consensus 164 ~l~~~g~~l~~~~s~~~~L~V~~~P~~~---~~~-~~p--~~l~eG~~v~l~C~~-~g~~P~~~~~v~w~~~g~~l~~ 234 (291)
T 1mq8_A 164 DLRPQGLELFENTSAPYQLQTFVLPATP---PQL-VSP--RVLEVDTQGTVVCSL-DGLFPVSEAQVHLALGDQRLNP 234 (291)
T ss_dssp ECGGGTSCEEEECCCCEECBC---------------------------------------------------------
T ss_pred cCCccCCccccccccceEEEEEecCCCC---cee-cCC--cCccCCCeEEEEEEc-CCCCCCcccEEEEEECCEecCc
Confidence 5431 2445567777654221 111 111 257799999999999 554 54 26999999988754
No 406
>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*
Probab=99.55 E-value=3.8e-14 Score=105.79 Aligned_cols=137 Identities=14% Similarity=0.153 Sum_probs=81.7
Q ss_pred CcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCC
Q psy14540 113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNH 192 (291)
Q Consensus 113 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~ 192 (291)
+..+.+.+|+.++|.|.+ .+.|.+.+.|+++.... .......... . ......+
T Consensus 8 p~~~~v~~G~~v~L~C~~-~~~~~~~v~W~k~~~~~--~~~~~~~~~~--~-------~~~~~~~--------------- 60 (242)
T 2znx_A 8 PATLSVTPGNSVSLSCRA-SQSIGNNLHXYQQKSHE--SPRLLIKYAS--Q-------SISGIPS--------------- 60 (242)
T ss_dssp CSEEEECTTCCEEEEEEE-SSCCTTCEEEEEECTTS--CCEEEEETTT--E-------ECTTSCT---------------
T ss_pred CCeEEEcCCCcEEEEEEe-CCCCCceEEEEEeCCCC--CceEEEEecc--c-------cCCCCCC---------------
Confidence 345778899999999999 67888999999853110 0000000000 0 0000011
Q ss_pred ceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCcc-CCceeEEEEecCCC--------------CCCCCcccccCCceE
Q psy14540 193 SSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVAS-DNHSSNLRVNVPPH--------------IGPFTFGELMEGVRT 257 (291)
Q Consensus 193 ~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~-~~~~~~l~v~~~p~--------------~~~~~~~~~~~g~~v 257 (291)
.+.+.......+|.|.++..+|+|.|.|.+.|..+. ......|.|..+|. +..++...+.+|+.+
T Consensus 61 r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v 140 (242)
T 2znx_A 61 RFSGSGSGTDFTLSINSVETEDFGMYFCQQSNSXPYTFGGGTKLEITGGGGSGGGGSGGGGSDIQLQESGPSLVKPSQTL 140 (242)
T ss_dssp TEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC---------------CCEEEEECCSEECTTSCE
T ss_pred CEEEecCCCEEEEEECCCChHHCEEEEEeEecCCceEECCCEEEEEcCCCCCCcccccccccceeeecCCcceecCCCeE
Confidence 112222233457888888888999999988876532 23345667766542 111222338999999
Q ss_pred EEEEEeecCCC--CceEEEEEC
Q psy14540 258 QVACVVQSGDL--PLSLQWYKN 277 (291)
Q Consensus 258 ~l~C~~~~~~p--~~~v~W~~~ 277 (291)
+|.|.+ .+.| .+.+.|+|+
T Consensus 141 ~L~C~~-~g~~~~~~~v~W~k~ 161 (242)
T 2znx_A 141 SLTCSV-TGDSITSDYXSXIRK 161 (242)
T ss_dssp EEEEEE-ESSCGGGSCEEEEEE
T ss_pred EEEEEE-EccccCCcceeeEee
Confidence 999999 6665 478999995
No 407
>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H
Probab=99.55 E-value=8.5e-14 Score=102.55 Aligned_cols=149 Identities=16% Similarity=0.210 Sum_probs=85.7
Q ss_pred ceeecCCCceEEEEEeeCCCC--CceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCC
Q psy14540 115 SIKVHSGDRAGVQCLVTKGDP--PLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNH 192 (291)
Q Consensus 115 ~~~~~~g~~~~l~C~~~~~~p--~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~ 192 (291)
.+.+.+|+.++|.|.+ .+.+ .+.+.|++..... .............. .. ......+.|.....
T Consensus 9 ~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~r~~~g~--~~~~~~~~~~~~~~-~~---~~~~~~~R~~~~~~-------- 73 (223)
T 1dee_B 9 GGVVQPGKSLRLSCAA-SGFTFSGYGMHWVRQAPGK--GLEWVALISYDESN-KY---YADSVKGRFTISRD-------- 73 (223)
T ss_dssp CCEECTTCCEEEEEEE-ESSCGGGSCEEEEEECTTS--CEEEEEEECTTSCC-EE---ECTTTBTTEEEEEE--------
T ss_pred CEEEcCCCcEEEEEEe-cCcccCCceEEEEEECCCC--CcEEEEEEecCCCc-cc---cCcccCCeEEEEec--------
Confidence 4678899999999998 4544 4789999853100 00000000000000 00 00001111211100
Q ss_pred ceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCc------cCCceeEEEEec----CCCCCCCC-cccccCCceEEEEE
Q psy14540 193 SSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVA------SDNHSSNLRVNV----PPHIGPFT-FGELMEGVRTQVAC 261 (291)
Q Consensus 193 ~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~------~~~~~~~l~v~~----~p~~~~~~-~~~~~~g~~v~l~C 261 (291)
.......|.|.++..+|+|.|.|.+.+..+ .......|.|.. +|.+.... ...+.+|+.++|.|
T Consensus 74 -----~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C 148 (223)
T 1dee_B 74 -----NSKNTLYLQMNSLRAEDTAVYYCAKVKFYDPTAPNDYWGQGTLVTVSSGSASAPTLFPLVSCENSNPSSTVAVGC 148 (223)
T ss_dssp -----TTTTEEEEEECSCCGGGCEEEEEEEESSSSTTCCEEEECCCEEEEECSSCCBCCEEEEEECTTCCCSSSEEEEEE
T ss_pred -----CCCCEEEEEECCCCHHHCEEEEEEEeccccCcccceeecCcEEEEEccCCCCCCEEEEecCCcccCCCCcEEEEE
Confidence 011246799999999999999999987642 112334677763 34443222 22367899999999
Q ss_pred EeecCCCCc-eEEEEE-CCEEccC
Q psy14540 262 VVQSGDLPL-SLQWYK-NGLAISQ 283 (291)
Q Consensus 262 ~~~~~~p~~-~v~W~~-~~~~l~~ 283 (291)
.+.+..|.+ .|.|++ ||..|..
T Consensus 149 ~~~g~~P~p~~v~W~~~~g~~l~~ 172 (223)
T 1dee_B 149 LAQDFLPDSITFSWKYKNNSDISS 172 (223)
T ss_dssp EEEEEBSSCCEEEEEETTSCBCSC
T ss_pred EEEEEeCCCeEEEeEccCCCccce
Confidence 995455776 999999 9988754
No 408
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=8.1e-14 Score=88.59 Aligned_cols=87 Identities=21% Similarity=0.377 Sum_probs=63.2
Q ss_pred cCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCC
Q psy14540 111 SNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASD 190 (291)
Q Consensus 111 ~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~ 190 (291)
..+....+.+|+.+.|.|.+ .|.+.+.|+++|..+....++.+...+.
T Consensus 12 ~~~~~~~v~~G~~v~l~C~v---~p~p~v~W~k~g~~l~~~~r~~i~~~~~----------------------------- 59 (100)
T 2yuz_A 12 TPLTDQTVNLGKEICLKCEI---SENIPGKWTKNGLPVQESDRLKVVQKGR----------------------------- 59 (100)
T ss_dssp BCCCCEEEETTSCCCEEEEC---SSCCCEEEEETTEECCCCSSEEEEECSS-----------------------------
T ss_pred ccCCceEEcCCCCEEEEEEe---CCCCeEEEEECCEECCCCCcEEEEEeCC-----------------------------
Confidence 44556789999999999998 6778999999999987665554332211
Q ss_pred CCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCCC
Q psy14540 191 NHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPH 242 (291)
Q Consensus 191 ~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p~ 242 (291)
...|.|.++..+|+|.|+|.|.|. ..+.+..|.|..+|.
T Consensus 60 -----------~~~L~I~~v~~~D~G~Y~C~a~N~--~~~~~a~L~V~~~P~ 98 (100)
T 2yuz_A 60 -----------IHKLVIANALTEDEGDYVFAPDAY--NVTLPAKVHVISGPS 98 (100)
T ss_dssp -----------EEEEEESSCCGGGCSEEEEEESSS--CCCEEEEEEEECCSC
T ss_pred -----------EEEEEECCCChhhCEEEEEEEcCC--CeeEEEEEEEeCCCC
Confidence 235667777777778888888776 455667777777664
No 409
>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}
Probab=99.55 E-value=5.8e-14 Score=85.88 Aligned_cols=66 Identities=20% Similarity=0.496 Sum_probs=45.3
Q ss_pred cceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEE
Q psy14540 114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCV 182 (291)
Q Consensus 114 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~ 182 (291)
..+.+.+|+.+.|.|.+ .+ |.+.+.|+|||.++....++.+...+. ...|.|.++..+|+|.|+|.
T Consensus 4 t~v~~~~G~~v~l~C~v-s~-p~p~v~W~k~g~~l~~~~~~~~~~~~~-~~~L~I~~~~~~D~G~Y~C~ 69 (84)
T 2lu7_A 4 TRVRSTPGGDLELVVHL-SG-PGGPVRWYKDGERLASQGRVQLEQAGA-RQVLRVQGARSGDAGEYLCD 69 (84)
T ss_dssp CCEEECTTSCEEEECCC-SC-CSTTCEEEETTEECCCCSSEEEEECSS-CEEEEESSCSSTTCEEEEEE
T ss_pred eEEEEecCCCEEEEEEE-CC-CCcEEEEEECCEEccccccEEEeecCC-eEEEEecCCCCcccEEEEEE
Confidence 35778899999999998 55 888999999999998777665544322 23444444444444444443
No 410
>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ...
Probab=99.55 E-value=4.2e-14 Score=105.30 Aligned_cols=147 Identities=13% Similarity=0.230 Sum_probs=86.1
Q ss_pred CcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCC
Q psy14540 113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNH 192 (291)
Q Consensus 113 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~ 192 (291)
+..+.+.+|+.++|.|.+ . .+.+.+.|++++... ..... +....- ... .. +....
T Consensus 6 p~~v~v~~G~~v~L~C~~-~-~~~~~v~W~r~~~~~--~~~~l----------~~~~~~----~~~-----~~--~~~~~ 60 (238)
T 1bec_A 6 PRNKVAVTGGKVTLSCQQ-T-NNHNNMYWYRQDTGH--GLRLI----------HYSYGA----GST-----EK--GDIPD 60 (238)
T ss_dssp CSEEEEETTCCEEEEEEE-S-SCCSEEEEEEECTTS--CEEEE----------EEEEET----TEE-----EE--CSCCT
T ss_pred CCeeEEeCCCcEEEEEEe-C-CCCceEEEEEECCCC--CEEEE----------EEEeCC----Ccc-----cC--CCccc
Confidence 345778899999999998 3 357899999864110 00000 000000 000 00 00001
Q ss_pred ceEEEE-eccceEEEEeeeecCCCeeEEEEeeeCCc-----cCCceeEEEEec------CCCCCCCCcc--cccCCceEE
Q psy14540 193 SSNLRV-NEYTSSLSIATLSTGHSGNYTCVASNTVA-----SDNHSSNLRVNV------PPHIGPFTFG--ELMEGVRTQ 258 (291)
Q Consensus 193 ~~~~~~-~~~~~~l~i~~~~~~~~g~y~C~~~~~~~-----~~~~~~~l~v~~------~p~~~~~~~~--~~~~g~~v~ 258 (291)
.+.+.. ......|.|.++..+|+|.|.|.+.+..+ .......|.|.. +|.+...... .+.+|+.++
T Consensus 61 R~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~ 140 (238)
T 1bec_A 61 GYKASRPSQEQFSLILELATPSQTSVYFCASGGGRGSYAEQFFGPGTRLTVLEDLRQVTPPKVSLFEPSKAEIANKQKAT 140 (238)
T ss_dssp TCEEECCSSSEEEEEESSCCGGGCEEEEEEEESCTTCGGGCEECCCEEEEEESCGGGCBCCEEEEECCCSTTCSSSCSCS
T ss_pred eEEEEecCCCEEEEEEecCCcccCEEEEEEEecCCCCccccccCCCEEEEEeccCCCCCCCceEEECCChHHcccCCceE
Confidence 111111 12345789999999999999999987631 112334566654 4444332222 256899999
Q ss_pred EEEEeecCCCC-ceEEEEECCEEccCC
Q psy14540 259 VACVVQSGDLP-LSLQWYKNGLAISQP 284 (291)
Q Consensus 259 l~C~~~~~~p~-~~v~W~~~~~~l~~~ 284 (291)
|.|.+.+.+|+ +.|.|++||.++..+
T Consensus 141 L~C~~~g~~P~~~~v~W~~~g~~~~~~ 167 (238)
T 1bec_A 141 LVCLARGFFPDHVELSWWVNGKEVHSG 167 (238)
T ss_dssp EEEEEEEEBSCCEEEEEEETTEEECTT
T ss_pred EEEEEeeEeCCCcEEEEEECCEECCCc
Confidence 99999444465 499999999988654
No 411
>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus}
Probab=99.55 E-value=3.5e-14 Score=92.63 Aligned_cols=96 Identities=21% Similarity=0.370 Sum_probs=71.0
Q ss_pred CCCcceeecceeeeecCCcEEEEEEecC--CCCCeeEEEECCeecCCCeeEeceEEeec----cceEEEEEEeecCCCCC
Q psy14540 1 SHPQLIYKFIQQTLQPGPPVSLKCIATG--NPTPHISWKLDGYPLAGDRFVMGQYMSLH----GDVISHVNISSVRVEDS 74 (291)
Q Consensus 1 s~p~~~~~~~~~~v~~g~~v~l~C~~~~--~~~~~v~W~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~i~~~~~~d~ 74 (291)
.+|.|...|....+.+|++++|.|.+.+ .+.+.+.|++++..+.............. ......|.|.+++..|+
T Consensus 9 ~~P~i~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~ 88 (112)
T 3so5_A 9 PXPQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGELMEYTTILRLRNVEFTSE 88 (112)
T ss_dssp CSCEEEECCCCEEECTTCCEEEEEEEEESCCCCCEEEEEETTEECTTCEEEEEEETTGGGSSCEEEEEEEEECSCCGGGC
T ss_pred CCCeEEeCCCCcEEECCCCEEEEEEEecCCCCCEEEEEccCCcccccccccceeeeeccCCCccccceEEEEeccccccC
Confidence 3788999998899999999999999985 44678999999998874332111010000 01236799999999999
Q ss_pred eEEEEEEeCCCCc-eeeeeeEEE
Q psy14540 75 GIYQCTATNRVGS-QTHSADMRV 96 (291)
Q Consensus 75 G~y~C~~~~~~~~-~~~~~~l~v 96 (291)
|.|+|.+.+..|. .+..+.|.|
T Consensus 89 G~Y~C~a~n~~g~~~s~~~~l~V 111 (112)
T 3so5_A 89 GXYQCVISNHFGSSYSVXAXLTI 111 (112)
T ss_dssp EEEEEEEEETTEEEECCCEEEEE
T ss_pred CeEEEEEEeCCCcEEEeEEEEEe
Confidence 9999999988776 446666655
No 412
>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L
Probab=99.54 E-value=6.4e-14 Score=106.67 Aligned_cols=137 Identities=17% Similarity=0.261 Sum_probs=81.9
Q ss_pred CcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCC
Q psy14540 113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNH 192 (291)
Q Consensus 113 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~ 192 (291)
+..+.+.+|+.++|.|.+ .+.|.+.+.|++++.... ......... . .... ...
T Consensus 19 p~~~~v~~G~~v~L~C~~-~~~p~~~i~W~r~~~~~~--~~~~~~~~~--~-------~~~~---------------~~~ 71 (276)
T 3auv_A 19 PSSLSASVGDRVTITCRA-SQDVSTAVAWYQQKPGKA--PKLLIYSAS--F-------LYSG---------------VPS 71 (276)
T ss_dssp CSEEECCTTCCEEEEEEE-SSCCTTCEEEEEECTTSC--CEEEEETTT--E-------ECTT---------------CCT
T ss_pred CCeEEEcCCCCEEEEeEc-CCCCCCcEEEEEECCCCC--CEEEEEEcC--c-------cCCC---------------CCC
Confidence 445778899999999999 678888999998542100 000000000 0 0000 011
Q ss_pred ceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCcc-CCceeEEEEecCC-------------CCCC--CCcccccCCce
Q psy14540 193 SSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVAS-DNHSSNLRVNVPP-------------HIGP--FTFGELMEGVR 256 (291)
Q Consensus 193 ~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~-~~~~~~l~v~~~p-------------~~~~--~~~~~~~~g~~ 256 (291)
.+.+.......+|.|.++..+|+|.|.|.+.|..+. ......|.|..+| .+.. +....+.+|+.
T Consensus 72 r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~p~~~~~~p~~~~v~~G~~ 151 (276)
T 3auv_A 72 RFSGSGSGTDFTLTISSLQPEDFATYYCQQHYTTPPTFGCGTKVEIKGGGGGSIEGRSGGGGSEVQLVESGGGLVQPGGS 151 (276)
T ss_dssp TEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCCCCCCEEEEC-----------------CCEEEEECCEEECTTCC
T ss_pred CEEEeccCCeEEEEEccCChhhCEEEEEEEecCCcccccCCEEEEEecCCCccccccccccCcceEEECCCceEecCCCe
Confidence 112222233457888888889999999998876533 3334556665443 2211 12223889999
Q ss_pred EEEEEEeecCCC--CceEEEEEC
Q psy14540 257 TQVACVVQSGDL--PLSLQWYKN 277 (291)
Q Consensus 257 v~l~C~~~~~~p--~~~v~W~~~ 277 (291)
++|.|.+ .+.| .+.+.|+|+
T Consensus 152 v~L~C~~-~g~~~~~~~v~W~k~ 173 (276)
T 3auv_A 152 LRLSCAA-SGFTISDYWIHWVRQ 173 (276)
T ss_dssp EEEEEEE-ESSCGGGSEEEEEEE
T ss_pred EEEEEEe-cCccCCCCEEEEEEc
Confidence 9999999 6655 589999996
No 413
>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A
Probab=99.54 E-value=9.5e-15 Score=93.29 Aligned_cols=92 Identities=24% Similarity=0.396 Sum_probs=69.1
Q ss_pred CCcceeec----ceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEE
Q psy14540 2 HPQLIYKF----IQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIY 77 (291)
Q Consensus 2 ~p~~~~~~----~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y 77 (291)
||.|...+ ....+.+|+.+.|.|.+.+.|.+.+.|++++..+......... ... ....+|.|.+++..|+|.|
T Consensus 4 ~P~~~~~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~-~~~--~~~~~L~i~~v~~~D~G~Y 80 (100)
T 3caf_A 4 APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGY-KVR--NQHWSLIMESVVPSDKGNY 80 (100)
T ss_dssp EEEESCTTTTSCCEEEECTTCCEEEECCEEEESCCEEEEEETTEECCGGGSTTCC-EEE--GGGTEEEECSCCGGGCEEE
T ss_pred CCEeEcCccccccEEEecCCCEEEEEEEccccCCCEEEEEECCEEcccccccccE-EEe--cCeEEEEEccCCcCCCEEE
Confidence 67777554 4567899999999999998888999999999887632110000 011 1124599999999999999
Q ss_pred EEEEeCCCCceeeeeeEEE
Q psy14540 78 QCTATNRVGSQTHSADMRV 96 (291)
Q Consensus 78 ~C~~~~~~~~~~~~~~l~v 96 (291)
+|.+.|..|.....+.|.|
T Consensus 81 ~C~a~N~~g~~~~~~~l~V 99 (100)
T 3caf_A 81 TCVVENEYGSINHTYHLDV 99 (100)
T ss_dssp EEEEEETTEEEEEEEEEEE
T ss_pred EEEEEeCCCEEEEEEEEEE
Confidence 9999998888777777765
No 414
>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A
Probab=99.54 E-value=1.8e-14 Score=121.29 Aligned_cols=139 Identities=18% Similarity=0.226 Sum_probs=91.1
Q ss_pred cceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCc
Q psy14540 114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHS 193 (291)
Q Consensus 114 ~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~ 193 (291)
....+.+|+.++|.|.+..+.|.+.+.|++++..+... ..... .. .....+.+.
T Consensus 374 ~~~~~~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~---~~~~~-~~---------~~~~~~r~~------------- 427 (581)
T 3o3u_N 374 QNITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEAW---KVLSP-QG---------GGPWDSVAR------------- 427 (581)
T ss_dssp EEEEEETTSCEEECCTTCCSSSSCEEEEEEEETTSSSC---EECCS-CC---------SSGGGGTSE-------------
T ss_pred cccceecCCcEEEeeeecCCCCCceEEEEEcCCeeEEE---Eeccc-CC---------CCCcCCcEE-------------
Confidence 34678899999999998557888999999986532111 00000 00 000000000
Q ss_pred eEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccC-CceeEEEEecCCCC---CCCCcccccCC-ceEEEEEEeecCCC
Q psy14540 194 SNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASD-NHSSNLRVNVPPHI---GPFTFGELMEG-VRTQVACVVQSGDL 268 (291)
Q Consensus 194 ~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~-~~~~~l~v~~~p~~---~~~~~~~~~~g-~~v~l~C~~~~~~p 268 (291)
+ ....+|.|.+++.+|+|.|+|.+.|..+.. ...+.|.|..+|.. ...... +..| ..+.|+|.+.+++|
T Consensus 428 ----~-~~~~~L~i~~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~p~i~~~~~~-~~~~~~~~~l~C~~~~~~P 501 (581)
T 3o3u_N 428 ----V-LPNGSLFLPAVGIQDEGIFRCQAMNRNGKETKSNYRVRVYQIPGKPEIVDSASE-LTAGVPNKVGTCVSEGSYP 501 (581)
T ss_dssp ----E-CTTSCEEESSCCGGGCEEEEEEEECTTSCEEEEEEEEEEEBCCCCCEEESCCSE-ECTTSCEEEEEEEEEEEBS
T ss_pred ----E-cCCceEEEeccccccCeEEEEEEEcCCCceeEEEEEEEEEcCCCCCEEEcCCcc-cccCCceeEEEEECCCCCC
Confidence 0 123468999999999999999999888765 67788888775432 222222 4444 44567999955579
Q ss_pred CceEEEEECCEEccCC
Q psy14540 269 PLSLQWYKNGLAISQP 284 (291)
Q Consensus 269 ~~~v~W~~~~~~l~~~ 284 (291)
.|.|+|++||++|...
T Consensus 502 ~~~i~W~~~g~~l~~~ 517 (581)
T 3o3u_N 502 AGTLSWHLDGKPLVPN 517 (581)
T ss_dssp CCEEEEEETTEECCTT
T ss_pred CCeEEEEECCEECCCC
Confidence 9999999999998643
No 415
>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*
Probab=99.54 E-value=2.4e-14 Score=105.67 Aligned_cols=145 Identities=15% Similarity=0.203 Sum_probs=83.9
Q ss_pred ceeecCCCceEEEEEeeCCCC--CceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCC
Q psy14540 115 SIKVHSGDRAGVQCLVTKGDP--PLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNH 192 (291)
Q Consensus 115 ~~~~~~g~~~~l~C~~~~~~p--~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~ 192 (291)
...+.+|+.++|.|.+ .+.+ .+.+.|+++...- .............. .. ......+.|
T Consensus 9 ~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~r~~~g~--~~~~~~~~~~~~~~-~~---~~~~~~~R~------------- 68 (225)
T 1op3_H 9 GGLVKAGGSLILSCGV-SNFRISAHTMNWVRRVPGG--GLEWVASISTSSTY-RD---YADAVKGRF------------- 68 (225)
T ss_dssp CEEEETTCCEEEEEEE-ESSCGGGSCEEEEEECTTS--CEEEEEEECGGGCC-EE---ECTTTTTTE-------------
T ss_pred CeEecCCCCEEEEEEe-cCcccCCceEEEEEeCCCC--CcEEEEEEccCCCc-cc---cCcccCCce-------------
Confidence 3678899999999999 4555 6789999853100 00000000000000 00 000001111
Q ss_pred ceEEEEe--ccceEEEEeeeecCCCeeEEEEeeeCCc--------cCCceeEEEEec----CCCCCCC-CcccccCCceE
Q psy14540 193 SSNLRVN--EYTSSLSIATLSTGHSGNYTCVASNTVA--------SDNHSSNLRVNV----PPHIGPF-TFGELMEGVRT 257 (291)
Q Consensus 193 ~~~~~~~--~~~~~l~i~~~~~~~~g~y~C~~~~~~~--------~~~~~~~l~v~~----~p~~~~~-~~~~~~~g~~v 257 (291)
.+... .....|.|.++..+|+|.|.|.+.+..+ .......|.|.. +|.+... +...+.+|+.+
T Consensus 69 --~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~~g~~v 146 (225)
T 1op3_H 69 --TVSRDDLEDFVYLQMHKMRVEDTAIYYCARKGSDRLSDNDPFDAWGPGTVVTVSPASTKGPSVFPLAPSSKSTSGGTA 146 (225)
T ss_dssp --EEEEETTTTEEEEEECSCCGGGCEEEEEEEECCSSCCSSCCEEEECCCEEEEEESCSCBCCEEEEECCCTTCCCCCEE
T ss_pred --EEEecCCCCEEEEEECCCChhhCEEEEEEEecCCCccccccceeecCCEEEecccCCCcCCeEEEecccccccCCCcE
Confidence 11111 2246788999999999999999988653 112345677764 2433322 22236789999
Q ss_pred EEEEEeecCCCCc-eEEEEECCEEc
Q psy14540 258 QVACVVQSGDLPL-SLQWYKNGLAI 281 (291)
Q Consensus 258 ~l~C~~~~~~p~~-~v~W~~~~~~l 281 (291)
+|.|.+.+.+|.+ .|.|+++|..+
T Consensus 147 ~L~C~~~g~~P~p~~v~W~~~~~~~ 171 (225)
T 1op3_H 147 ALGCLVKDYFPEPVTVSWNSGALTS 171 (225)
T ss_dssp EEEEEEEEEBSSCCEEECCTTSCCT
T ss_pred EEEEEEEeEECCCeEEEEecCCCcC
Confidence 9999995444766 99999998764
No 416
>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=1.7e-14 Score=91.35 Aligned_cols=82 Identities=26% Similarity=0.517 Sum_probs=66.0
Q ss_pred CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEE
Q psy14540 2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTA 81 (291)
Q Consensus 2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~ 81 (291)
+|.|...|....+.+|+.++|.|.+.+.|.+.+.|++++..+.... ...|.|.+++..|+|.|+|.+
T Consensus 10 ~~~i~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~~~~~~~~~-------------~~~L~i~~v~~~d~G~Y~C~a 76 (96)
T 2ens_A 10 EVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPP-------------SPVLILPEIGPQDQGTYSCVA 76 (96)
T ss_dssp SCCCEEESTTSEECTTCEEEEECCCSSCSSCCCCCEESSSBCSSCC-------------CSEEEEESCCTTTCEEEECEE
T ss_pred CCEEEECCCCCEEcCCCeEEEEEEEccCCCCEEEEEECCEECcCCC-------------CCEEEECCCCcccCEEEEEEE
Confidence 6788889988899999999999999988888999999998776321 135889999999999999999
Q ss_pred eCCCCce--eeeeeEEE
Q psy14540 82 TNRVGSQ--THSADMRV 96 (291)
Q Consensus 82 ~~~~~~~--~~~~~l~v 96 (291)
.+..+.. +..+.+.|
T Consensus 77 ~n~~~~~~~s~~~~v~V 93 (96)
T 2ens_A 77 THSSHGPQESRAVSISI 93 (96)
T ss_dssp CCSSCCCEECCCEEEEE
T ss_pred EeCCCCcEEEEEEEEEE
Confidence 9865543 33444444
No 417
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4
Probab=99.54 E-value=3.8e-14 Score=90.28 Aligned_cols=77 Identities=23% Similarity=0.273 Sum_probs=51.7
Q ss_pred CCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCC
Q psy14540 112 NSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVAS 189 (291)
Q Consensus 112 ~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 189 (291)
.+....+.+|+.+.|.|.+ .|.|.+.+.|++++..+....+............|.|.++..+|.|.|+|.+.|..|.
T Consensus 11 ~~~~~~v~~G~~v~l~C~~-~g~p~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~ 87 (99)
T 1g1c_A 11 RIQSQTVGQGSDAHFRVRV-VGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAINIAGE 87 (99)
T ss_dssp CCCCEEEETTSCEEEEEEE-EEESCCEEEEEETTEECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEE
T ss_pred cCcceEEcCCCcEEEEEEE-EEeCCCEEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCCcCCCEEEEEEEEECCCc
Confidence 3445778899999999999 5889999999999999876655443322233444555555555555555555554443
No 418
>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A
Probab=99.54 E-value=8e-14 Score=103.77 Aligned_cols=138 Identities=12% Similarity=0.190 Sum_probs=82.0
Q ss_pred CcceeecCCCceEEEEEeeCCCCCceeEEeECC--EeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCC
Q psy14540 113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNG--LPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASD 190 (291)
Q Consensus 113 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~--~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~ 190 (291)
+..+.+.+|+.++|.|.. +.|.+.+.|+++. ... .+.+.... ....+ . +..
T Consensus 7 p~~~~v~~G~~v~L~C~~--~~~~~~i~W~k~~~~~~~----------------~~~~~~~~--~~~~~-----~--~~~ 59 (238)
T 2p1y_A 7 PRNKVAVTGGKVTLSCNQ--TNNHNNMYWYRQDTGHGL----------------RLIHYSYG--AGSTE-----K--GDI 59 (238)
T ss_dssp CSEEEEETTCCEEEEEEE--CSCCSEEEEEEEETTTEE----------------EEEEEESS--TTCCE-----E--CSS
T ss_pred ccceEEeCCCEEEEEeec--CCCCccEEEEEECCCCCc----------------EEEEEEec--Cccee-----C--CCc
Confidence 345778899999999993 6788999999852 111 00000000 00000 0 000
Q ss_pred CCceEEEE-eccceEEEEeeeecCCCeeEEEEeeeCCcc-----CCceeEEEEecCC------------CCCCCCccc-c
Q psy14540 191 NHSSNLRV-NEYTSSLSIATLSTGHSGNYTCVASNTVAS-----DNHSSNLRVNVPP------------HIGPFTFGE-L 251 (291)
Q Consensus 191 ~~~~~~~~-~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~-----~~~~~~l~v~~~p------------~~~~~~~~~-~ 251 (291)
...+.+.. .....+|.|.++..+|+|.|.|.+.+..+. ......|.|...+ .+...+... +
T Consensus 60 ~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~~~p~~~~~~~~v~~~p~~~~v 139 (238)
T 2p1y_A 60 PDGYKASRPSQENFSLILELATPSQTSVYFCASGDLGQTNERLFFGHGTKLSVLGSADDAKKDAAKKDGQVRQSPQSLTV 139 (238)
T ss_dssp CTTCEEECCSSSBCEEEESSCCGGGCEEEEEEEEC------CEEECCCEEEEEECCCHHHHHHHHHHHTCCEEECSEEEE
T ss_pred cceEEEEccCCceEEEEEecCCcccCeeEEEEEEeCCCccccceeCCCeEEEEeccCCCCcCCcccceeeEEccCceEEE
Confidence 00111111 122457888888889999999998876532 1233456665543 343333333 8
Q ss_pred cCCceEEEEEEeecCCCCceEEEEECC
Q psy14540 252 MEGVRTQVACVVQSGDLPLSLQWYKNG 278 (291)
Q Consensus 252 ~~g~~v~l~C~~~~~~p~~~v~W~~~~ 278 (291)
.+|+.++|.|.+ .+.|.+.+.|+|++
T Consensus 140 ~~G~~v~L~C~~-~~~p~~~i~W~k~~ 165 (238)
T 2p1y_A 140 WEGETAILNCSY-ENSAFDYFPWYQQF 165 (238)
T ss_dssp ETTSCEEEEEEC-CCTTCCEEEEEEEC
T ss_pred eCCCeEEEEEEE-ecCCCCcEEEEEEC
Confidence 999999999999 88888999999964
No 419
>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A
Probab=99.53 E-value=8.5e-14 Score=94.25 Aligned_cols=87 Identities=26% Similarity=0.469 Sum_probs=67.8
Q ss_pred CCCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCC-----------eeEeceEEeeccceEEEEEEeec
Q psy14540 1 SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGD-----------RFVMGQYMSLHGDVISHVNISSV 69 (291)
Q Consensus 1 s~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~l~i~~~ 69 (291)
.||.|...|....+.+|++++|.|.+.+.|.+.+.|++++..+... +.... ..........|.|.++
T Consensus 20 ~pP~~~~~p~~~~v~~G~~v~L~C~~~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~L~I~~v 97 (137)
T 3qr2_A 20 HMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIH--ATYHQHAASTISIDTL 97 (137)
T ss_dssp -CCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEEEESSTTCCCEECCTTHHHHTEEEE--EEESSSEEEEEEECSC
T ss_pred CCCeEEcCCCCEEEeCCCCEEEEEEEeeecCCeEEEEECCCCccccceeecccCcccceEEe--cccccccceEEEECCC
Confidence 3799999999999999999999999999999999999987755421 11111 1112234478999999
Q ss_pred CCCCCeEEEEEEeCCCCcee
Q psy14540 70 RVEDSGIYQCTATNRVGSQT 89 (291)
Q Consensus 70 ~~~d~G~y~C~~~~~~~~~~ 89 (291)
+.+|+|.|+|.+.|..|...
T Consensus 98 ~~~D~G~Y~C~a~N~~G~~~ 117 (137)
T 3qr2_A 98 VEEDTGTYECRASNDPDRNH 117 (137)
T ss_dssp CGGGCEEEEEEEECCTTSSS
T ss_pred CcccCEEEEEEEEecCCccc
Confidence 99999999999999887653
No 420
>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Probab=99.53 E-value=2.9e-13 Score=101.02 Aligned_cols=151 Identities=15% Similarity=0.155 Sum_probs=85.6
Q ss_pred CcceeecCCCceEEEEEeeCC-CCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCC
Q psy14540 113 SRSIKVHSGDRAGVQCLVTKG-DPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDN 191 (291)
Q Consensus 113 ~~~~~~~~g~~~~l~C~~~~~-~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~ 191 (291)
+..+.+.+|+.++|.|.+... .+.+.+.|+++...- ............. .... .....+.|.-...
T Consensus 8 p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~--~~~~~~~~~~~~~--~~~~--~~~~~~R~~~~~~------- 74 (242)
T 1hxm_B 8 QISSTKTLSKTARLECVVSGITISATSVYWYRERPGE--VIQFLVSISYDGT--VRKE--SGIPSGKFEVDRI------- 74 (242)
T ss_dssp CSEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTS--CCEEEEEECSSSC--EEEC--TTCCTTSEEEEEE-------
T ss_pred CceEEecCCCcEEEEEEeCCccccCceEEEEEeCCCC--CcEEEEEEecCCc--eecC--CcccCCeEEEEec-------
Confidence 455788899999999998432 256789999853110 0000000000000 0000 0001122221110
Q ss_pred CceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCc-------cCCceeEEEEec-------CCCCCCCC-c-ccccCCc
Q psy14540 192 HSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVA-------SDNHSSNLRVNV-------PPHIGPFT-F-GELMEGV 255 (291)
Q Consensus 192 ~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~-------~~~~~~~l~v~~-------~p~~~~~~-~-~~~~~g~ 255 (291)
......+|.|.++..+|+|.|.|.+.+... .......|.|.. +|...... . ..+.+|+
T Consensus 75 ------~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~p~~~v~~p~~~~~~~g~ 148 (242)
T 1hxm_B 75 ------PETSTSTLTIHNVEKQDIATYYCALWEAQQELGKKIKVFGPGTKLIITDKQLDADVSPKPTIFLPSIAETKLQK 148 (242)
T ss_dssp ------TTTTEEEEEECSCCGGGCEEEEEEEEEECSSTTCEEEEECCCEEEEEESSCCCSCCSCBCCCCCCCGGGGGSSS
T ss_pred ------CCCcEEEEEECCCCcccCEEEEEeeecCCccccccceeEcCcEEEEEcccccCCCcCCCceEECCChhhcccCC
Confidence 001256789999999999999999987531 112345677765 23332222 2 2266899
Q ss_pred eEEEEEEeecCCCC-ceEEEEECCE-Ecc
Q psy14540 256 RTQVACVVQSGDLP-LSLQWYKNGL-AIS 282 (291)
Q Consensus 256 ~v~l~C~~~~~~p~-~~v~W~~~~~-~l~ 282 (291)
.++|.|.+.+.+|. +.|.|+++|. .+.
T Consensus 149 ~v~L~C~~~g~~P~~~~v~W~~~~~~~l~ 177 (242)
T 1hxm_B 149 AGTYLCLLEKFFPDVIKIHWEEKKSNTIL 177 (242)
T ss_dssp CEEEEEEEEEESSCCEEEEEEESSSCCCC
T ss_pred CceEEEEEeeEECCCeEEEEEcCCCEeec
Confidence 99999999544564 7999999987 564
No 421
>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A
Probab=99.53 E-value=8.2e-14 Score=90.22 Aligned_cols=89 Identities=20% Similarity=0.416 Sum_probs=70.2
Q ss_pred CCCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecC-CCeeEeceEEeeccceEEEEEEeecCCCCCeEEEE
Q psy14540 1 SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLA-GDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQC 79 (291)
Q Consensus 1 s~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C 79 (291)
.||.|...+....+.+|++++|.|.+.+. +.+.|++++..+. ..++... .....+.|.|.+++.+|+|.|+|
T Consensus 7 ~pp~~~~~~~~~~v~~G~~v~l~C~~~~~--p~v~W~k~~~~~~~~~~~~~~-----~~~~~~~L~I~~v~~~D~G~Y~C 79 (108)
T 2dm7_A 7 GPARFTQDLKTKEASEGATATLQCELSKV--APVEWKKGPETLRDGGRYSLK-----QDGTRCELQIHDLSVADAGEYSC 79 (108)
T ss_dssp CCCCBCSCCBCCEEETTSCEEEEEEBSSS--CCCEEESSSSBCCSSSSCEEE-----EETTEEEEEESSCCTTTCSEEEE
T ss_pred CCCeeeecCCcEEEeCCCcEEEEEEeCCC--CeeEEEECCEECCCCCCEEEE-----ecCCEEEEEECCCCcccCEEEEE
Confidence 37899988999999999999999999764 6899999998876 3333321 22345779999999999999999
Q ss_pred EEeCCCCceeeeeeEEEEcCC
Q psy14540 80 TATNRVGSQTHSADMRVYDAP 100 (291)
Q Consensus 80 ~~~~~~~~~~~~~~l~v~~~~ 100 (291)
.+. .......|.|...|
T Consensus 80 ~a~----n~~~~~~l~V~~~p 96 (108)
T 2dm7_A 80 MCG----QERTSATLTVRALP 96 (108)
T ss_dssp EET----TEEEEEECEEECCC
T ss_pred EEc----CCEEEEEEEEecCC
Confidence 994 35667777887654
No 422
>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*
Probab=99.53 E-value=7e-14 Score=102.78 Aligned_cols=145 Identities=14% Similarity=0.246 Sum_probs=85.3
Q ss_pred ceeecCCCceEEEEEeeCCCC--CceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCC
Q psy14540 115 SIKVHSGDRAGVQCLVTKGDP--PLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNH 192 (291)
Q Consensus 115 ~~~~~~g~~~~l~C~~~~~~p--~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~ 192 (291)
...+.+|+.++|.|.+ .+.+ .+.+.|++....- .............. .. ......+.|
T Consensus 9 ~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~r~~~~~--~~~~l~~~~~~~~~-~~---~~~~~~~R~------------- 68 (220)
T 2fbj_H 9 GGLVQPGGSLKLSCAA-SGFDFSKYWMSWVRQAPGK--GLEWIGEIHPDSGT-IN---YTPSLKDKF------------- 68 (220)
T ss_dssp CEEECTTCCEEEEEEE-ESSCGGGSCEEEEEECTTS--CEEEEEEECTTSSC-EE---ECTTTTTTE-------------
T ss_pred CeEecCCCcEEEEEEe-cCccCCCceEEEEEECCCC--CeEEEEEEccCCCc-ee---cCCccCCcE-------------
Confidence 4678899999999998 4544 5789999853100 00000000000000 00 000001112
Q ss_pred ceEEEE--eccceEEEEeeeecCCCeeEEEEeeeCCcc---CCceeEEEEec----CCCCCCCCcccccCCceEEEEEEe
Q psy14540 193 SSNLRV--NEYTSSLSIATLSTGHSGNYTCVASNTVAS---DNHSSNLRVNV----PPHIGPFTFGELMEGVRTQVACVV 263 (291)
Q Consensus 193 ~~~~~~--~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~---~~~~~~l~v~~----~p~~~~~~~~~~~~g~~v~l~C~~ 263 (291)
.+.. ......|.|.++..+|+|.|.|.+.+..+. ......|.|.. +|.+...+...+..|+.++|.|.+
T Consensus 69 --~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~g~~v~L~C~~ 146 (220)
T 2fbj_H 69 --IISRDNAKNSLYLQMSKVRSEDTALYYCARLHYYGYNAYWGQGTLVTVSAESARNPTIYPLTLPPALSSDPVIIGCLI 146 (220)
T ss_dssp --EEEECSSSCEEEEEECSCCGGGCEEEEEEEEETTTEEEEECCCEEEEECSSCCBCCEEEEECCCSSSCCSSEEEEEEE
T ss_pred --EEEeeCCCCEEEEEECCCChhhCEEEEEEEeccccccceecCCEEEEecCCCCCCCEEEEeecccccCCCcEEEEEEE
Confidence 1111 122457899999999999999999886432 23345677764 344433332236799999999999
Q ss_pred ecCCCC--ceEEEEECCEEc
Q psy14540 264 QSGDLP--LSLQWYKNGLAI 281 (291)
Q Consensus 264 ~~~~p~--~~v~W~~~~~~l 281 (291)
.+.+|. +.|.|+++|..+
T Consensus 147 ~g~~P~~~~~v~W~~~~~~~ 166 (220)
T 2fbj_H 147 HDYFPSGTMNVTWGKSGKDI 166 (220)
T ss_dssp EEEBSCCCEEEEESCCCSSC
T ss_pred EeEECCCcEEEEEecCCEec
Confidence 544476 799999999765
No 423
>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*
Probab=99.53 E-value=2.6e-14 Score=105.19 Aligned_cols=77 Identities=13% Similarity=0.301 Sum_probs=52.3
Q ss_pred ceeecCCCceEEEEEeeCCCCCc---eeEEeECCEeccC----------------CCceEEec------cCCceEEEEEe
Q psy14540 115 SIKVHSGDRAGVQCLVTKGDPPL---TISWLKNGLPILS----------------DAEITIRS------SGEYTSSLSIA 169 (291)
Q Consensus 115 ~~~~~~g~~~~l~C~~~~~~p~~---~~~W~~~~~~~~~----------------~~~~~~~~------~~~~~~~l~i~ 169 (291)
.+.+..|+.++|.|.+ .+.+.+ .+.|+|++..+.. ..+..... .......|.|.
T Consensus 10 ~V~~~~G~~v~L~C~~-~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~ 88 (225)
T 4fmk_A 10 EVRGRLGGTVELPCHL-LPPTTERVSQVTWQRLDGTVVAAFHPSFGVDFPNSQFSKDRLSFVRARPETNADLRDATLAFR 88 (225)
T ss_dssp EEEEETTSCEEECCEE-CSSCCCEEEEEEEECTTSCEEEEEETTTEEECCCTTSCTTTEEECCCSCSCCSSCCBCCEEEC
T ss_pred EEEEecCCCEEEEEEE-ECCCCCceeEEEEEECCCcceEEEecccceeeccccccccceeeeccccccccccCcEEEEEc
Confidence 4677899999999998 565554 4899997643311 01111110 11234579999
Q ss_pred eCCCCCceeEEEEEEecCCCCCC
Q psy14540 170 TLSTGHSGNYTCVASNTVASDNH 192 (291)
Q Consensus 170 ~~~~~d~g~y~C~~~~~~~~~~~ 192 (291)
+++.+|+|.|+|.+.+..+....
T Consensus 89 ~v~~~D~G~Y~C~~~~~~~~~~~ 111 (225)
T 4fmk_A 89 GLRVEDEGNYTCEFATFPNGTRR 111 (225)
T ss_dssp SCCGGGCEEEEEEEEEETTEEEE
T ss_pred cCCHHHCcceEEEEEeCCCccee
Confidence 99999999999999987665433
No 424
>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=2.1e-13 Score=89.04 Aligned_cols=89 Identities=21% Similarity=0.362 Sum_probs=68.6
Q ss_pred CCcceeecce---eeeecCCcEEEEEEecCCCCCeeEEEECCeecCC-CeeEeceEEeeccceEEEEEEeecCCCCCeEE
Q psy14540 2 HPQLIYKFIQ---QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAG-DRFVMGQYMSLHGDVISHVNISSVRVEDSGIY 77 (291)
Q Consensus 2 ~p~~~~~~~~---~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y 77 (291)
||.++..|.. ..+.+|+.+.|.|.+. .|.+.+.|++++..+.. .++.. ........|.|.+++.+|+|.|
T Consensus 10 pp~~~~~p~~~~~~~~~~G~~v~L~C~~~-~p~~~v~W~k~g~~~~~~~~~~~-----~~~~~~~~L~I~~v~~~D~G~Y 83 (113)
T 2cpc_A 10 VSSWIVYPSGKVYVAAVRLERVVLTCELC-RPWAEVRWTKDGEEVVESPALLL-----QKEDTVRRLVLPAVQLEDSGEY 83 (113)
T ss_dssp CSCSEEESCSCEEEEEETTCCEEEEEEES-CTTCCCEEEETTEECCCBTTBEE-----EECSSEEEEEESSCCTTTCEEE
T ss_pred CCcEEEccCCceeEEEEcCCeEEEEEEec-CCCCeEEEEECCEECccCCCEEE-----EECCCEEEEEECCCCcccCEEE
Confidence 5666666655 6788999999999996 78889999999998863 23222 1223346799999999999999
Q ss_pred EEEEeCCCCceeeeeeEEEEcCC
Q psy14540 78 QCTATNRVGSQTHSADMRVYDAP 100 (291)
Q Consensus 78 ~C~~~~~~~~~~~~~~l~v~~~~ 100 (291)
+|.+.+ ....+.|.|...|
T Consensus 84 ~C~a~n----~~~~~~l~V~~~p 102 (113)
T 2cpc_A 84 LCEIDD----ESASFTVTVTEPP 102 (113)
T ss_dssp EEESSS----CEEEEEEEEECCC
T ss_pred EEEEec----CcEEEEEEEecCC
Confidence 999986 5567778887765
No 425
>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens}
Probab=99.53 E-value=6.4e-14 Score=105.29 Aligned_cols=146 Identities=18% Similarity=0.262 Sum_probs=84.3
Q ss_pred CcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCC
Q psy14540 113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNH 192 (291)
Q Consensus 113 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~ 192 (291)
+..+.+.+|+.++|.|.+ .+.+.+.+.|++.... ... .+.+..... +.+.-.. ...
T Consensus 8 p~~v~v~~G~~v~L~C~~-~~~~~~~v~W~r~~~~----~~~----------~~~~~~~~~---~~~~~~~------~~~ 63 (253)
T 3to4_D 8 PRWRLVPRGQAVNLRCIL-KNSQYPWMSWYQQDLQ----KQL----------QWLFTLRSP---GDKEVKS------LPG 63 (253)
T ss_dssp CSEEEEESSCCEEEEEEC-SCTTCCCEEEEEEETT----CCE----------EEEEEECST---TCEEEEE------ETT
T ss_pred CCeEEEeCCCcEEEEEEe-CCCCcceEEEEEECCC----CCc----------EEEEEECCC---cceecCC------ccC
Confidence 345778899999999997 5778889999983210 000 000000000 0000000 000
Q ss_pred -ceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCc------cCCceeEEEEec------CCCCCCCCccc--ccCCceE
Q psy14540 193 -SSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVA------SDNHSSNLRVNV------PPHIGPFTFGE--LMEGVRT 257 (291)
Q Consensus 193 -~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~------~~~~~~~l~v~~------~p~~~~~~~~~--~~~g~~v 257 (291)
.+.+....... |.|.++..+|+|.|.|.+.+..+ .......|.|.. +|.+....... +..|+.+
T Consensus 64 ~R~~~~~~~~~~-L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~ 142 (253)
T 3to4_D 64 ADYLATRVTDTE-LRLQVANMSQGRTLYCTSSADHWTNTGQLYFGEGSKLTVLEDLKNVFPPEVAVFEPSEAEISHTQKA 142 (253)
T ss_dssp EEEEEECCSSSC-CEEEEESCSSCEEEEEEEECSCCSTTCCEEECCCEEEEEESCSTTCBCCEEEEEECCHHHHHHHSEE
T ss_pred CcEEEEeCCCCe-EEEccCChhhCeEEEEEEecCCCCcccceEECCCEEEEEecCCCCCCCCeEEEeCCChhhcccCCce
Confidence 11111111122 88999999999999999986542 122233556653 33333222111 3457899
Q ss_pred EEEEEeecCCCCc-eEEEEECCEEccC
Q psy14540 258 QVACVVQSGDLPL-SLQWYKNGLAISQ 283 (291)
Q Consensus 258 ~l~C~~~~~~p~~-~v~W~~~~~~l~~ 283 (291)
+|.|.+.+++|++ .+.|++||.++..
T Consensus 143 ~L~C~~~g~~P~~i~v~W~k~g~~l~~ 169 (253)
T 3to4_D 143 TLVCLATGFYPDHVELSWWVNGKEVHS 169 (253)
T ss_dssp EEEEEEEEEBSSCEEEEEEETTEEECT
T ss_pred EEEEEEceEECCcEEEEEEECCEECCC
Confidence 9999995547766 9999999999865
No 426
>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}
Probab=99.53 E-value=1.1e-13 Score=104.12 Aligned_cols=136 Identities=16% Similarity=0.268 Sum_probs=80.0
Q ss_pred cceeecCCCceEEEEEeeCCC--CCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCC
Q psy14540 114 RSIKVHSGDRAGVQCLVTKGD--PPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDN 191 (291)
Q Consensus 114 ~~~~~~~g~~~~l~C~~~~~~--p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~ 191 (291)
....+.+|+.++|.|.+ .+. +.+.+.|+++.... ........... ......+.|
T Consensus 10 ~~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~r~~~~~--~~~~~~~~~~~---------~~~~~~~r~------------ 65 (256)
T 3ux9_B 10 PSVSGAPGQRVTISCSG-SSSNIGSNYVSWYQQLPGT--APKLLIYDNNQ---------RPSGVPDRF------------ 65 (256)
T ss_dssp SEEEECTTCCEEEEEEC-CTTTTTTSCCEEEEECTTS--CCEEEEBTTTB---------CCTTCCTTE------------
T ss_pred CcEEEcCCCcEEEEEec-CCCCCCCceEEEEEECCCC--CCEEEEEecCC---------CCCCcCCcE------------
Confidence 34788899999999998 455 77899999853110 00000000000 000001111
Q ss_pred CceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCc---cCCceeEEEEecCCC---------------------CCCCC
Q psy14540 192 HSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVA---SDNHSSNLRVNVPPH---------------------IGPFT 247 (291)
Q Consensus 192 ~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~---~~~~~~~l~v~~~p~---------------------~~~~~ 247 (291)
.+........|.|.++..+|+|.|.|.+.+..+ .......|.|..++. +...+
T Consensus 66 ---~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (256)
T 3ux9_B 66 ---SGSKSGTSASLAITGLQSEDEADYYCQVRDNNENEWVFGGGTKLTVLGSGGSTITSYNVYYTKLSSSGSEVQLVESG 142 (256)
T ss_dssp ---EEEEETTEEEEEECSCCGGGCEEEEEEEEETTTTEEEECCCEEEEEC----------------------CCEEEEEC
T ss_pred ---EEEccCCEEEEEECCCChhhCEEEEEEEEECCCCceEECCCEEEEEECCCCCcCccceeEEeecCCCccceeEEcCC
Confidence 222222345788888888888888888887542 233445666665431 22222
Q ss_pred cccccCCceEEEEEEeecCCC--CceEEEEEC
Q psy14540 248 FGELMEGVRTQVACVVQSGDL--PLSLQWYKN 277 (291)
Q Consensus 248 ~~~~~~g~~v~l~C~~~~~~p--~~~v~W~~~ 277 (291)
...+.+|+.++|.|.+ .+.+ .+.+.|+|+
T Consensus 143 ~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~r~ 173 (256)
T 3ux9_B 143 GGLVQPGGSLRLSCAA-SGFTFSSYAMSWVRQ 173 (256)
T ss_dssp CEEECTTCCEEEEEEE-ESSCGGGSEEEEEEE
T ss_pred CeEEcCCCeEEEEEEE-eCCcccccEEEEEEE
Confidence 2238899999999999 6655 689999997
No 427
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}
Probab=99.53 E-value=2.7e-13 Score=88.86 Aligned_cols=94 Identities=22% Similarity=0.360 Sum_probs=70.8
Q ss_pred cCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCC-CceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCC
Q psy14540 111 SNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSD-AEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVAS 189 (291)
Q Consensus 111 ~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 189 (291)
..+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+... .+......+.
T Consensus 20 ~~p~~~~v~~G~~v~L~C~~-~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~---------------------------- 70 (116)
T 2kkq_A 20 YKPQSKKVLEGDSVKLECQI-SAIPPPKLFWKRNNEMVQFNTDRISLYQDNT---------------------------- 70 (116)
T ss_dssp SCCCCEEEETTEEEEEEEEB-CCBSCCEEEEEETTEECCCCBTTEEEEECTT----------------------------
T ss_pred eCCCcEEEeCCCcEEEEEEE-eccCCCEEEEEECCEECcCCCCeEEEEeCCC----------------------------
Confidence 44566789999999999999 68999999999999887542 2222211111
Q ss_pred CCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCCCCC
Q psy14540 190 DNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIG 244 (291)
Q Consensus 190 ~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p~~~ 244 (291)
...+|.|.++..+|+|.|+|.|.|..|.....+.|.|..+|...
T Consensus 71 -----------~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~p~~~ 114 (116)
T 2kkq_A 71 -----------GRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTARPNQT 114 (116)
T ss_dssp -----------CEEEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEEECCSCCC
T ss_pred -----------CeEEEEECCCCcccCEEEEEEEEcCCCeEEEEEEEEEeCCCCCC
Confidence 02368888888899999999999988888888888888877543
No 428
>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*
Probab=99.52 E-value=6.4e-14 Score=103.01 Aligned_cols=79 Identities=18% Similarity=0.350 Sum_probs=55.5
Q ss_pred ceEEEEeeeecCCCeeEEEEeeeCCcc---CCceeEEEEec----CCCCCCCCc-ccccCCceEEEEEEeecCCCCc-eE
Q psy14540 202 TSSLSIATLSTGHSGNYTCVASNTVAS---DNHSSNLRVNV----PPHIGPFTF-GELMEGVRTQVACVVQSGDLPL-SL 272 (291)
Q Consensus 202 ~~~l~i~~~~~~~~g~y~C~~~~~~~~---~~~~~~l~v~~----~p~~~~~~~-~~~~~g~~v~l~C~~~~~~p~~-~v 272 (291)
...|.|.++...|+|.|.|.+.+..+. ......|.|.. +|.+...+. ..+.+|+.++|.|.+.+..|.| .|
T Consensus 80 ~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v 159 (220)
T 1pz5_B 80 SVYLQMNNLRAEDTGIYYCTRGGAVGAMDYWGQGTSVTVSSATTTAPSVYPLVPGCSDTSGSSVTLGCLVKGYFPEPVTV 159 (220)
T ss_dssp EEEEEECSCCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEECCCSCCSCSSSEEEEEEEEEEBSSCCEE
T ss_pred eEEEEEccCCHHHCEEEEEEEecCCcccceECCCEEEEEccCCCCCCeEEEcccccccCCCCcEEEEEEEEEEeCCCeEE
Confidence 457889999999999999999886421 12345666653 344333222 2367899999999994444888 99
Q ss_pred EEEECCEE
Q psy14540 273 QWYKNGLA 280 (291)
Q Consensus 273 ~W~~~~~~ 280 (291)
.|++++..
T Consensus 160 ~W~~~~~~ 167 (220)
T 1pz5_B 160 KWNYGALS 167 (220)
T ss_dssp EEGGGTCC
T ss_pred EEecCCcc
Confidence 99999863
No 429
>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...
Probab=99.52 E-value=3.4e-14 Score=104.97 Aligned_cols=146 Identities=18% Similarity=0.266 Sum_probs=79.6
Q ss_pred cceeecCCCceEEEEEeeCCCC--CceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCC
Q psy14540 114 RSIKVHSGDRAGVQCLVTKGDP--PLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDN 191 (291)
Q Consensus 114 ~~~~~~~g~~~~l~C~~~~~~p--~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~ 191 (291)
....+.+|+.++|.|.+ .+.+ .+.+.|++++... .... .+.+.. ......| .. ...
T Consensus 8 ~~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~r~~~g~----~~~~--------l~~~~~--~~~~~~~-----~~--~~~ 65 (227)
T 1mju_H 8 GAELVKPGASVKLSCKA-SGYTFTNYWINWVKQRPGQ----GLEW--------IGNIYP--GSSYTHY-----NE--KFK 65 (227)
T ss_dssp SEEEECTTCCEEEEEEE-ESSCGGGSCEEEEEECTTS----CEEE--------EEEEET--TTTEEEE-----CG--GGT
T ss_pred CCeEEcCCCCEEEEEEe-cCCccccceEEEEEeCCCC----CcEE--------EEEEec--cCCceee-----CC--ccC
Confidence 44678899999999999 4555 6789999854110 0000 000000 0000000 00 000
Q ss_pred CceEEEE--eccceEEEEeeeecCCCeeEEEEeeeCCc-cCCceeEEEEec----CCCCCCCC-cccccCCceEEEEEEe
Q psy14540 192 HSSNLRV--NEYTSSLSIATLSTGHSGNYTCVASNTVA-SDNHSSNLRVNV----PPHIGPFT-FGELMEGVRTQVACVV 263 (291)
Q Consensus 192 ~~~~~~~--~~~~~~l~i~~~~~~~~g~y~C~~~~~~~-~~~~~~~l~v~~----~p~~~~~~-~~~~~~g~~v~l~C~~ 263 (291)
..+.+.. ......|.|.++..+|+|.|.|.+.+... .......|.|.. +|.+.... ...+.+|+.++|.|.+
T Consensus 66 ~R~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~ 145 (227)
T 1mju_H 66 NKATLTVDTSSSTAYMQLSSLTSDDSAVYYCANKLGWFPYWGQGTLVTVSAAKTTAPSVYPLAPVCGDTSGSSVTLGCLV 145 (227)
T ss_dssp TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEECSSCCBCCEEEEECCCC------CEEEEEEE
T ss_pred CcEEEEEeCCCCeEEEEECCCCcccCEEEEEEECCCCceEEcCcEEEEEcCCCCCCCEEEEecCCccccCCCcEEEEEEe
Confidence 1111111 12346788999999999999999987532 122334667764 23333222 2236789999999999
Q ss_pred ecCCCCc-eEEEEECCEEc
Q psy14540 264 QSGDLPL-SLQWYKNGLAI 281 (291)
Q Consensus 264 ~~~~p~~-~v~W~~~~~~l 281 (291)
.+.+|.+ .|.|+++|..+
T Consensus 146 ~g~~P~p~~v~W~~~g~~~ 164 (227)
T 1mju_H 146 KGYFPEPVTLTWNSGSLSS 164 (227)
T ss_dssp EEEBSSCCEEEEGGGTBCT
T ss_pred ecEeCCCeEEEEecCCCcC
Confidence 4445766 99999999865
No 430
>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A
Probab=99.52 E-value=1.3e-13 Score=103.81 Aligned_cols=141 Identities=15% Similarity=0.178 Sum_probs=82.5
Q ss_pred cceeecCCCceEEEEEeeCC-CCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCC
Q psy14540 114 RSIKVHSGDRAGVQCLVTKG-DPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNH 192 (291)
Q Consensus 114 ~~~~~~~g~~~~l~C~~~~~-~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~ 192 (291)
....+.+|+.++|.|.+... .+.+.+.|++.... .... ..+.+.. .....+ ......
T Consensus 16 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~----~~~~--------~~~~~~~---~~~~~~-------~~~~~~ 73 (257)
T 3gkz_A 16 GPSLVKPSQTLSLTCSVTGDSVTSGYWSWIRQFPG----NKLD--------YMGYISY---RGSTYY-------NPSLKS 73 (257)
T ss_dssp CCSEECTTCCEEEEEEEEESCCSSCEEEEEEECTT----SCEE--------EEEEEET---TCCEEE-------CTTTTT
T ss_pred CCeEEcCCCcEEEEEEEEcccccceEEEEEEECCC----CCcE--------EEEEEec---CCcEEe-------cccccc
Confidence 34568899999999998432 35789999984211 0000 0000100 000000 000111
Q ss_pred ceEEEE--eccceEEEEeeeecCCCeeEEEEeeeCC----ccCCceeEEEEecC--------------CCCCCCCccc-c
Q psy14540 193 SSNLRV--NEYTSSLSIATLSTGHSGNYTCVASNTV----ASDNHSSNLRVNVP--------------PHIGPFTFGE-L 251 (291)
Q Consensus 193 ~~~~~~--~~~~~~l~i~~~~~~~~g~y~C~~~~~~----~~~~~~~~l~v~~~--------------p~~~~~~~~~-~ 251 (291)
.+.+.. .....+|.|.++..+|+|.|.|.+.+.. ........|.|..+ +.+...+... +
T Consensus 74 r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~p~~~~v 153 (257)
T 3gkz_A 74 RISITRDTSKNQVYLQLKSVSSEDTATYYCSYFDSDDYAMEYWGQGTSVTVSGGGGSGGGGSGGGGSQIVLTQSPAIMSA 153 (257)
T ss_dssp TEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEECTTCTTCEEECCCEEEEEC---------CTTCCCCCCEECSCSEEEE
T ss_pred cEEEEEecCCceEEEEECCCChhhCEEEEEEEecCCCcceeEEcCCEEEeecCchhhcccccCCCccceEEEcCCceEEE
Confidence 222221 1234579999999999999999998862 22334456666654 3443333333 8
Q ss_pred cCCceEEEEEEeecCCCCc-eEEEEEC
Q psy14540 252 MEGVRTQVACVVQSGDLPL-SLQWYKN 277 (291)
Q Consensus 252 ~~g~~v~l~C~~~~~~p~~-~v~W~~~ 277 (291)
.+|+.++|.|.+ .+.|.+ .+.|+|+
T Consensus 154 ~~G~~v~L~C~~-~~~~~~~~v~W~k~ 179 (257)
T 3gkz_A 154 SPGEKVTLTCSA-SSSVSSSHLYWYQQ 179 (257)
T ss_dssp CTTCCEEEEEEE-SSCCCGGGEEEEEE
T ss_pred eCCCcEEEEEEE-ccCccceEEEEEEE
Confidence 999999999999 667766 9999983
No 431
>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A
Probab=99.52 E-value=9.3e-14 Score=104.04 Aligned_cols=137 Identities=15% Similarity=0.188 Sum_probs=81.4
Q ss_pred CcceeecCCCceEEEEEeeCCCC-----CceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecC
Q psy14540 113 SRSIKVHSGDRAGVQCLVTKGDP-----PLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTV 187 (291)
Q Consensus 113 ~~~~~~~~g~~~~l~C~~~~~~p-----~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 187 (291)
+..+.+.+|+.++|.|.+ .+.| .+.+.|+++...- ... +.+.... .+ .
T Consensus 8 p~~~~v~~G~~v~L~C~~-~~~~~~~~~~~~v~W~~~~~~~----~~~----------~~~~~~~-----~~------~- 60 (247)
T 1svz_A 8 PLYLPVSLGDQASISCRS-SQTIVHNNGNTYLEWYLQKPGQ----SPQ----------LLIYKVS-----NR------F- 60 (247)
T ss_dssp CSEEEECTTCCEEEEEEE-SSCCBCTTSCBCEEEEEECTTS----CEE----------EEEETTT-----EE------C-
T ss_pred CCeEEecCCCCEEEEEeC-CCcccccCCCceEEEEEECCCC----Cce----------EEEEEec-----cc------C-
Confidence 345788899999999999 5666 6899999843100 000 0000000 00 0
Q ss_pred CCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCcc-CCceeEEEEecCC------------C--CCCCCccccc
Q psy14540 188 ASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVAS-DNHSSNLRVNVPP------------H--IGPFTFGELM 252 (291)
Q Consensus 188 ~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~-~~~~~~l~v~~~p------------~--~~~~~~~~~~ 252 (291)
......+.+........|.|.++..+|+|.|.|.+.|..+. ......|.|..++ . +...+...+.
T Consensus 61 ~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 140 (247)
T 1svz_A 61 SGVPDRFSGSGSGTDFTLKISRVEAEDLGIYYCFQGSHFPPTFGGGTKLEIKGGGGSGGGGSGGGGSEVQLQQSGPELKK 140 (247)
T ss_dssp TTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC---------------CCEEEECCCEEEC
T ss_pred CCCCCcEEeccCCCEEEEEECCCCHHHCEEEEEEEccCCccEECCCEEEEEECCccccccccccccCceEEeCCCceeec
Confidence 00011122222233457888889999999999998876532 2334566666542 1 1222223389
Q ss_pred CCceEEEEEEeecCCC--CceEEEEEC
Q psy14540 253 EGVRTQVACVVQSGDL--PLSLQWYKN 277 (291)
Q Consensus 253 ~g~~v~l~C~~~~~~p--~~~v~W~~~ 277 (291)
+|+.++|.|.+ .+.+ .+.+.|+|+
T Consensus 141 ~G~~v~L~C~~-~~~~~~~~~v~W~k~ 166 (247)
T 1svz_A 141 PGETVKISCKA-TNYAFTDYSMHWVKQ 166 (247)
T ss_dssp TTCCEEEEEEE-ESSCGGGSCEEEEEE
T ss_pred CCCcEEEEEEE-cCcccCCcEEEEEEe
Confidence 99999999999 6654 579999996
No 432
>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens}
Probab=99.52 E-value=1.7e-13 Score=93.71 Aligned_cols=95 Identities=20% Similarity=0.292 Sum_probs=71.9
Q ss_pred CcceeecceeeeecCCcEEEEEEecCCCCCeeEEEE---------CCeecCCCeeEeceEEeeccceEEEEEEeecCCCC
Q psy14540 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKL---------DGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVED 73 (291)
Q Consensus 3 p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~---------~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d 73 (291)
+.+...|..+.+.+|++++|.|.+.+.+.+.+.|++ ++..+...++.... ......+|.|.+++.+|
T Consensus 39 ~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~i~W~~~~~~~i~~~~~~~~~~~r~~~~~----~~~~~~~L~I~~v~~~D 114 (145)
T 1z9m_A 39 DDSQPWTSDETVVAGGTVVLKCQVKDHEDSSLQWSNPAQQTLYFGEKRALRDNRIQLVT----STPHELSISISNVALAD 114 (145)
T ss_dssp CTTCCBCCCEEEETTSCEEEEEECSCCTTCCEEEECTTCCEEEETTEECSCCTTEEEEE----ECSSEEEEEECSCCGGG
T ss_pred cceecCCceEEEEcCCCEEEEEEEcCCCCcEEEEECCCCcEEEECCceecccCCEEEec----CCCCeEEEEECCCChhh
Confidence 345667788899999999999999988788999994 33333333332211 12235679999999999
Q ss_pred CeEEEEEEeCCCCceeeeeeEEEEcCCCC
Q psy14540 74 SGIYQCTATNRVGSQTHSADMRVYDAPGQ 102 (291)
Q Consensus 74 ~G~y~C~~~~~~~~~~~~~~l~v~~~~~~ 102 (291)
+|.|+|.+.+. +.....+.|.|..+|..
T Consensus 115 sG~Y~C~~~n~-~~~~~~~~L~V~~~P~~ 142 (145)
T 1z9m_A 115 EGEYTCSIFTM-PVRTAKSLVTVLGIPQK 142 (145)
T ss_dssp CEEEEEEECSS-SCEEEEEEEEEECCCC-
T ss_pred CEEEEEEEEcC-CCceEEEEEEEEeCCCC
Confidence 99999999988 88888889999886643
No 433
>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D
Probab=99.52 E-value=2.6e-13 Score=102.20 Aligned_cols=140 Identities=18% Similarity=0.274 Sum_probs=83.6
Q ss_pred ceeecCCCceEEEEEeeCCCC--CceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCC
Q psy14540 115 SIKVHSGDRAGVQCLVTKGDP--PLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNH 192 (291)
Q Consensus 115 ~~~~~~g~~~~l~C~~~~~~p--~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~ 192 (291)
...+.+|+.++|.|.+ .+.+ .+.+.|++.... .... +.+..........+ ......
T Consensus 11 ~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~r~~~~----~~~~----------~~~~~~~~~~~~~~-------~~~~~~ 68 (256)
T 3umt_A 11 LELVKPGASVKISCKT-SGYTFTEYTMHWVKQSHG----KSLE----------WIGGINPNNGGTSY-------NQKFKG 68 (256)
T ss_dssp CEEECTTCCEEEEEEE-ESSCGGGSCEEEEEECTT----SCEE----------EEEEECTTTCCEEE-------CGGGTT
T ss_pred ceEEcCCCCEEEEEEE-ecccccccEEEEEEECCC----CCcE----------EEEEEeccCCcccc-------cccccc
Confidence 3568899999999998 4655 679999984211 0000 00000000000000 000001
Q ss_pred ceEEEE--eccceEEEEeeeecCCCeeEEEEeeeC----CccCCceeEEEEec----------------CCCCCCCCccc
Q psy14540 193 SSNLRV--NEYTSSLSIATLSTGHSGNYTCVASNT----VASDNHSSNLRVNV----------------PPHIGPFTFGE 250 (291)
Q Consensus 193 ~~~~~~--~~~~~~l~i~~~~~~~~g~y~C~~~~~----~~~~~~~~~l~v~~----------------~p~~~~~~~~~ 250 (291)
.+.+.. ......|.|.++..+|+|.|.|.+.+. .+.......|.|.. +|.+...+...
T Consensus 69 r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 148 (256)
T 3umt_A 69 KAILTVDKSSSTAYLELRSLTSEDSAVYYCARDDRYPAWFAYWGQGTTVTVSSGGGGSGGGGSGGGGSTDIQLTQSPSSL 148 (256)
T ss_dssp TEEEEEEGGGTEEEEEECSCCGGGCEEEEEEECCSTTCCSCEECCCEEEEECC---------------CCCCEEEECSEE
T ss_pred eEEEEEecCCCEEEEEECCCCcccCEEEEEEEccCCCccccEECCCEEEEEcCCCccccCcccCCCCccccEEEcCCCeE
Confidence 111111 123456888999999999999998876 23334455677764 44444444433
Q ss_pred -ccCCceEEEEEEeecCCCCceEEEEEC
Q psy14540 251 -LMEGVRTQVACVVQSGDLPLSLQWYKN 277 (291)
Q Consensus 251 -~~~g~~v~l~C~~~~~~p~~~v~W~~~ 277 (291)
+.+|+.++|.|.+ .+.|.+.+.|+|+
T Consensus 149 ~v~~G~~v~L~C~~-~~~~~~~v~W~k~ 175 (256)
T 3umt_A 149 SASLGERVSITCRA-SQDIGSNLNWLQQ 175 (256)
T ss_dssp EECTTCCEEEEEEE-SSCCTTCEEEEEE
T ss_pred EEECCCCEEEEEEE-ecCCCcEEEEEEE
Confidence 8999999999999 7788889999994
No 434
>3nl4_H Antigen binding fragment,immunoglobulin IGG - HEA; FAB, rabbit, conformation-specific, amyloid, immune system; 1.54A {Oryctolagus cuniculus} PDB: 4hbc_H
Probab=99.52 E-value=2.2e-13 Score=99.81 Aligned_cols=146 Identities=14% Similarity=0.185 Sum_probs=83.8
Q ss_pred cceeecCCCceEEEEEeeC-CCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCC
Q psy14540 114 RSIKVHSGDRAGVQCLVTK-GDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNH 192 (291)
Q Consensus 114 ~~~~~~~g~~~~l~C~~~~-~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~ 192 (291)
..+.+.+|+.++|.|.+.. ..+.+.+.|++.... .... +.+... .+...+ .. .....
T Consensus 7 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~----~~~~----------~~~~~~--~~~~~~----~~--~~~~~ 64 (215)
T 3nl4_H 7 GGRLVTPGTPLTLACTVSGFSLNTYSMFWVRQAPG----KGLQ----------WIGIIS--NFGVIY----YA--TWAKG 64 (215)
T ss_dssp CCCEECTTCCEEEEEEEESSCTTTCCEEEEEECTT----SCEE----------EEEEEC--TTCCEE----EC--GGGTT
T ss_pred CCEEEcCCCcEEEEEEecCcccCCCeEEEEEECCC----CCeE----------EEEEEe--cCCccc----cC--CcccC
Confidence 3467889999999999843 234678999984311 0000 000000 000000 00 00011
Q ss_pred ceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCcc----CCceeEEEEe----cCCCCCC-CCcccccCCceEEEEEEe
Q psy14540 193 SSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVAS----DNHSSNLRVN----VPPHIGP-FTFGELMEGVRTQVACVV 263 (291)
Q Consensus 193 ~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~----~~~~~~l~v~----~~p~~~~-~~~~~~~~g~~v~l~C~~ 263 (291)
.+.+........|.|.++..+|+|.|.|.+.+..+. ......|.|. .+|.+.. .+...+.+|+.++|.|.+
T Consensus 65 r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~l~C~~ 144 (215)
T 3nl4_H 65 RFTISKTSTTVDLKITSPTTEDTATYFCVRKYGSEWGGDLWGPGTLVTVSSGQPKAPSVFPLAPCCGDTPSSTVTLGCLV 144 (215)
T ss_dssp TEEEEECSSEEEEEESSCCGGGCEEEEEEEECSSSSCEEEECCCEEEEECSSCCBCCEEEEECCCTTCCC--CEEEEEEE
T ss_pred CEEEEeeCCEEEEEECCCCcccCEEEEEEEecCCCccceEEcCCEEEEEeCCCcCCCEEEEecCCccccCCCcEEEEEEE
Confidence 222222334567999999999999999999887542 3344566775 3444442 222336789999999999
Q ss_pred ecCCC-CceEEEEECCEEc
Q psy14540 264 QSGDL-PLSLQWYKNGLAI 281 (291)
Q Consensus 264 ~~~~p-~~~v~W~~~~~~l 281 (291)
.+++| ++.+.|+++|..+
T Consensus 145 ~~~~p~~~~v~W~~~g~~~ 163 (215)
T 3nl4_H 145 KGYLPEPVTVTWNSGTLTN 163 (215)
T ss_dssp EEEBSSCCEEEEGGGTBCT
T ss_pred eeeeCCCeEEEEeeCCEEC
Confidence 44444 3578899999744
No 435
>1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*
Probab=99.52 E-value=2.5e-13 Score=99.41 Aligned_cols=147 Identities=14% Similarity=0.192 Sum_probs=86.3
Q ss_pred cceeecCCCceEEEEEeeCCCC--CceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCC
Q psy14540 114 RSIKVHSGDRAGVQCLVTKGDP--PLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDN 191 (291)
Q Consensus 114 ~~~~~~~g~~~~l~C~~~~~~p--~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~ 191 (291)
....+.+|+.++|.|.+ .+.+ .+.+.|+++.... ...........+. ........+.|......
T Consensus 8 ~~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~r~~~~~--~~~~l~~~~~~~~-----~~~~~~~~~R~~~~~~~------ 73 (215)
T 1c5d_H 8 GPGLVQPSQTLSLTCTV-SGFPLTTNGVSWVRQPPGK--GLEWIAAISSGGS-----PYYNSALKSRLSINRDT------ 73 (215)
T ss_dssp CCCEECTTCCEEEEEEE-CSSCTTSCCEEEEEECTTS--CCEEEEEECTTCC-----EECCTTTGGGEEEEEET------
T ss_pred CCeeecCCCcEEEEEEE-CCCcCCCCeEEEEEECCCC--CcEEEEEEcCCCC-----cEECCcccCcEEEEeeC------
Confidence 34678899999999998 4543 5789999853110 0000000000000 00000111222211100
Q ss_pred CceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCc---cCCceeEEEEec----CCCCCCCC-cccccCCceEEEEEEe
Q psy14540 192 HSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVA---SDNHSSNLRVNV----PPHIGPFT-FGELMEGVRTQVACVV 263 (291)
Q Consensus 192 ~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~---~~~~~~~l~v~~----~p~~~~~~-~~~~~~g~~v~l~C~~ 263 (291)
......|.|.++..+|+|.|.|.+.+..+ .......|.|.. +|.+.... ...+.+|+.++|.|.+
T Consensus 74 -------~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~ 146 (215)
T 1c5d_H 74 -------SKSQVFLKMNSLQTEDTAIYFCTREDGWNYFDYWGPGTMVTVSSAQTTAPSVYPLAPGCGDTTSSTVTLGCLV 146 (215)
T ss_dssp -------TTTEEEEEESSCCGGGCEEEEEEECCSSSCSCCBCCCEEEEECSSCCBCCCEEEECCCSSCCCCSSEEEEEEE
T ss_pred -------CCceEEEEECCCCcccCEEEEEEEecCCcccceEcCCEEEEecCCCCCCCeEEeccCChhhccCCcEEEEEEE
Confidence 11245799999999999999999988642 122345677763 34444322 2236789999999999
Q ss_pred ecCCCCc-eEEEEECCEEc
Q psy14540 264 QSGDLPL-SLQWYKNGLAI 281 (291)
Q Consensus 264 ~~~~p~~-~v~W~~~~~~l 281 (291)
.+..|.+ .|.|+++|..+
T Consensus 147 ~g~~P~p~~v~W~~~g~~~ 165 (215)
T 1c5d_H 147 KGYFPEPVTVTWNSGALSS 165 (215)
T ss_dssp EEEBSSCCEEEEGGGTTCC
T ss_pred eeeEcCCcEEEEccCCccC
Confidence 5444777 99999998764
No 436
>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=3e-14 Score=93.38 Aligned_cols=91 Identities=22% Similarity=0.364 Sum_probs=71.5
Q ss_pred CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecC-CCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEE
Q psy14540 2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLA-GDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCT 80 (291)
Q Consensus 2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~ 80 (291)
|+.|...+.+..+.+|++++|.|.+.+.|.+.+.|++++..+. ..++.+. ........|.|.+++.+|+|.|+|.
T Consensus 13 p~~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~l~~~~~~~~~----~~~~~~~~L~I~~v~~~D~G~Y~C~ 88 (115)
T 2cr6_A 13 RVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEID----AQPGGYHVLTLRQLALKDSGTIYFE 88 (115)
T ss_dssp CCEEEECCCEEEEETTSCEECCCEEESTTCCSCEEEESSCEECCSSSCCBC----CBTTTBCCBEECSCCTTTCEEEEEE
T ss_pred CCeEeccCccEEEeCCCcEEEEEEEcCCCCCccEEEECCEECCCCCcEEEE----EcCCCEEEEEEcCCChhhCEEEEEE
Confidence 3467778888999999999999999998888999999998877 3333221 1123345699999999999999999
Q ss_pred EeCCCCceeeeeeEEEEcCC
Q psy14540 81 ATNRVGSQTHSADMRVYDAP 100 (291)
Q Consensus 81 ~~~~~~~~~~~~~l~v~~~~ 100 (291)
+ +.....+.|.|...|
T Consensus 89 ~----g~~~~~~~L~V~~~p 104 (115)
T 2cr6_A 89 A----GDQRASAALRVTEKP 104 (115)
T ss_dssp E----TTEECCEEEEEECCS
T ss_pred E----CCeeEEEEEEEECCC
Confidence 4 556677888888765
No 437
>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...
Probab=99.51 E-value=5.4e-14 Score=103.97 Aligned_cols=145 Identities=14% Similarity=0.225 Sum_probs=82.7
Q ss_pred cceeecCCCceEEEEEeeCCCCC----ceeEEeECC--EeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecC
Q psy14540 114 RSIKVHSGDRAGVQCLVTKGDPP----LTISWLKNG--LPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTV 187 (291)
Q Consensus 114 ~~~~~~~g~~~~l~C~~~~~~p~----~~~~W~~~~--~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 187 (291)
....+.+|+.++|.|.+ .+.|. +.+.|+++. ... .........+. .. ......+.|......
T Consensus 8 ~~~~v~~G~~v~L~C~~-~~~~~~~~~~~v~W~r~~~g~~~----~~l~~~~~~~~--~~---~~~~~~~R~~~~~~~-- 75 (228)
T 3bae_H 8 GPGLLKPSQTLSLTCSF-SGFSIRTSKVGVSWIRQPSGKGL----EWLAHIYWDDD--KR---YNPSLESRLTISKDT-- 75 (228)
T ss_dssp CCSEECTTCCEEEEEEE-ESSCHHHHCCEEEEEEEETTCCC----EEEEEECTTSC--EE---ECTTTGGGEEEEEET--
T ss_pred CceeecCCCeEEEEEEE-eCcccCCCceeEEEEEECCCCCe----EEEEEEecCCc--ee---eCcccCCcEEEEEcC--
Confidence 34678899999999999 46653 789999853 111 00000000000 00 000011222211100
Q ss_pred CCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCc---------cCCceeEEEEec----CCCCCCCC-cccccC
Q psy14540 188 ASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVA---------SDNHSSNLRVNV----PPHIGPFT-FGELME 253 (291)
Q Consensus 188 ~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~---------~~~~~~~l~v~~----~p~~~~~~-~~~~~~ 253 (291)
......|.|.++..+|+|.|.|.+.+..+ .......|.|.. +|.+.... ...+.+
T Consensus 76 -----------~~~~~~L~I~~v~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~ 144 (228)
T 3bae_H 76 -----------SRDMVFMKITSVDTADTATYYCARRGFYGRKYEVNHFDYWGQGTTLTVSSAKTTAPSVYPLAPVCGDTT 144 (228)
T ss_dssp -----------TTTEEEEEECSCCGGGCEEEEEEEEEESTTCTTSEEEEEECCCEEEEECSCCCBCCEEEEECC-----C
T ss_pred -----------CCCeEEEEEcCCCcccCEEEEEEEecCCCccccccceeeeCCcEEEEecCCCCCCCEEEEecccccccC
Confidence 11246789999999999999999987653 112335677763 34443322 223678
Q ss_pred CceEEEEEEeecCCCCc-eEEEEECCEEc
Q psy14540 254 GVRTQVACVVQSGDLPL-SLQWYKNGLAI 281 (291)
Q Consensus 254 g~~v~l~C~~~~~~p~~-~v~W~~~~~~l 281 (291)
|+.++|.|.+.+.+|.+ .|.|+++|..+
T Consensus 145 g~~~~l~C~~~g~~P~p~~v~W~~~~~~~ 173 (228)
T 3bae_H 145 GSSVTLGCLVKGYFPEPVTLTWNSGSLSS 173 (228)
T ss_dssp CSEEEEEEEEEEEBSSCCEEEEGGGTCCT
T ss_pred CCCEEEEEEEccEeCCCEEEEEeeCCccc
Confidence 99999999994445776 99999998764
No 438
>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A
Probab=99.51 E-value=1.4e-13 Score=103.46 Aligned_cols=75 Identities=17% Similarity=0.338 Sum_probs=54.3
Q ss_pred ceEEEEeeeecCCCeeEEEEeeeCCccC-CceeEEEEec---------------CCCCCCCCccc-ccCCceEEEEEEee
Q psy14540 202 TSSLSIATLSTGHSGNYTCVASNTVASD-NHSSNLRVNV---------------PPHIGPFTFGE-LMEGVRTQVACVVQ 264 (291)
Q Consensus 202 ~~~l~i~~~~~~~~g~y~C~~~~~~~~~-~~~~~l~v~~---------------~p~~~~~~~~~-~~~g~~v~l~C~~~ 264 (291)
..+|.|.++..+|+|.|.|.+.+..+.. .....|.|.. +|.+...+... +.+|+.++|.|.+
T Consensus 79 ~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~- 157 (253)
T 3uzq_A 79 TAYLHLSSLTSGDTAVYYCSRGWEGFAYWGQGTLVTVSAGGGGSGGGGSGGGGSELVMTQTPASLAVSLGQRATISCRA- 157 (253)
T ss_dssp EEEEEECSCCGGGCEEEEEEECSSSCCEECCCEEEEECSSSCCCCC---------CCEEEECSEEEECTTSCEEEEEEE-
T ss_pred eEEEEeCCCCcccCEEEEEEEeeCCccEECCCcEEEEecCCccccccccCCCcccceEECcCCeEEEeCCCCEEEEEEe-
Confidence 4568888999999999999998855332 3455666664 34444434333 8999999999999
Q ss_pred cCCCCc----eEEEEEC
Q psy14540 265 SGDLPL----SLQWYKN 277 (291)
Q Consensus 265 ~~~p~~----~v~W~~~ 277 (291)
.+.|.+ .+.|+|+
T Consensus 158 ~~~~~~~~~~~v~W~r~ 174 (253)
T 3uzq_A 158 SENVDRYGNSFMHWYQQ 174 (253)
T ss_dssp SSCCEETTEECEEEEEE
T ss_pred cCccccCCCcEEEEEEE
Confidence 777766 9999994
No 439
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}
Probab=99.51 E-value=9.5e-14 Score=88.40 Aligned_cols=76 Identities=26% Similarity=0.410 Sum_probs=49.5
Q ss_pred CcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCC
Q psy14540 113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVAS 189 (291)
Q Consensus 113 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 189 (291)
+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+.................|.|..+..+|.|.|+|.+.|..|.
T Consensus 12 ~~~~~v~~G~~v~l~C~~-~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~g~ 87 (99)
T 1u2h_A 12 LMDQSVREGQDVIMSIRV-QGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGFYTCKAVNEYGA 87 (99)
T ss_dssp CCCEEEETTCCEEEEEEE-EEESCCEEEEEETTEECCCBTTEEEEECGGGEEEEEESSCCGGGCEEEEEEEEETTEE
T ss_pred CCceEecCCCEEEEEEEE-EEcCCCEEEEEECCEECCCCCCEEEEECCCCEEEEEEccCCcCCCEEEEEEEEECCCc
Confidence 345678899999999999 6889899999999998866544332222222334555555555555555555554443
No 440
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}
Probab=99.51 E-value=6.6e-14 Score=89.31 Aligned_cols=76 Identities=25% Similarity=0.399 Sum_probs=47.2
Q ss_pred CCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCC
Q psy14540 112 NSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVA 188 (291)
Q Consensus 112 ~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~ 188 (291)
.+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+.............+...|.|..+...|.|.|+|.+.|..|
T Consensus 11 ~p~~~~~~~G~~~~l~C~~-~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g 86 (100)
T 2kdg_A 11 VPENMSIDEGRFCRMDFKV-SGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRASDAGAYACVAKNRAG 86 (100)
T ss_dssp CCCCEEEETTCCEEEEEEC-EEESCCEEEEEETTEEECCCSSSCEEEETTTEEEEEESSCCGGGCEEEEEEEEETTE
T ss_pred CCCCEEecCCCEEEEEEEE-EeeCCCEEEEEECCEECcCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCC
Confidence 3455778899999999999 588999999999998886654332222222223444444444444444444444333
No 441
>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1
Probab=99.50 E-value=1.8e-13 Score=104.56 Aligned_cols=144 Identities=13% Similarity=0.228 Sum_probs=81.2
Q ss_pred cceeecCCCceEEEEEeeCCCC--CceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCC
Q psy14540 114 RSIKVHSGDRAGVQCLVTKGDP--PLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDN 191 (291)
Q Consensus 114 ~~~~~~~g~~~~l~C~~~~~~p--~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~ 191 (291)
....+.+|+.++|.|.+ .+.+ .+.+.|++++.. .... +.+.......... .. ....
T Consensus 34 ~~~~v~~G~~v~L~C~~-~g~~~~~~~v~W~r~~~~----~~~~----------~l~~~~~~~~~~~------~~-~~~~ 91 (282)
T 1qok_A 34 GAELVRSGTSVKLSCTA-SGFNIKDSYMHWLRQGPE----QGLE----------WIGWIDPENGDTE------YA-PKFQ 91 (282)
T ss_dssp CCEEEETTCCEEEEEEE-ESSCGGGSCEEEEEECTT----CCEE----------EEEEEETTTTEEE------EC-GGGB
T ss_pred CCEEEeCCCeEEEEEec-cCCCCCCceEEEEEeCCC----CCcE----------EEEEEecCCCccc------cC-chhc
Confidence 34678899999999998 4554 578999996411 0000 0000000000000 00 0000
Q ss_pred CceEEEE--eccceEEEEeeeecCCCeeEEEEeeeCCcc-----CCceeEEEEecCC---------------CCCCCCcc
Q psy14540 192 HSSNLRV--NEYTSSLSIATLSTGHSGNYTCVASNTVAS-----DNHSSNLRVNVPP---------------HIGPFTFG 249 (291)
Q Consensus 192 ~~~~~~~--~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~-----~~~~~~l~v~~~p---------------~~~~~~~~ 249 (291)
..+.+.. .....+|.|.++..+|+|.|.|.+.|..+. ......|.|..+| .+...+..
T Consensus 92 ~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~p~~ 171 (282)
T 1qok_A 92 GKATFTTDTSSNTAYLQLSSLTSEDTAVYYCNEGTPTGPYYFDYWGQGTTVTVSSGGGGSGGGGSGGGGSENVLTQSPAI 171 (282)
T ss_dssp TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEECSSSSCCCEEECCCEEEEEEC---------------CCCEEEECSE
T ss_pred CcEEEEEecCCCeEEEEECcCChhhCEEEEEEeccCCCccceeeeCCCEEEEEecCCcccCCccCCCCccceEEecCCCE
Confidence 0111111 112457888888888888888888876541 1233456666543 22222323
Q ss_pred c-ccCCceEEEEEEeecCCCCceEEEEE--CCEEc
Q psy14540 250 E-LMEGVRTQVACVVQSGDLPLSLQWYK--NGLAI 281 (291)
Q Consensus 250 ~-~~~g~~v~l~C~~~~~~p~~~v~W~~--~~~~l 281 (291)
. +.+|+.++|.|.+ .+.| +.+.|+| +|..+
T Consensus 172 ~~v~~G~~v~L~C~~-~~~~-~~v~W~k~~~g~~~ 204 (282)
T 1qok_A 172 MSASPGEKVTITCSA-SSSV-SYMHWFQQKPGTSP 204 (282)
T ss_dssp EEECTTCCEEEEEEE-SSCC-SCCEEEEECTTSCC
T ss_pred EEEcCCCcEEEEEEe-cCCC-ceEEEEEECCCCCc
Confidence 3 8899999999999 7777 8999999 55544
No 442
>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X
Probab=99.50 E-value=7.6e-14 Score=92.51 Aligned_cols=96 Identities=23% Similarity=0.343 Sum_probs=68.4
Q ss_pred ceeecce-eeeecCCcEEEEEEecC--CCCCeeEEEECCeecCCC----eeEeceEEeeccceEEEEEEeecCCCCCeEE
Q psy14540 5 LIYKFIQ-QTLQPGPPVSLKCIATG--NPTPHISWKLDGYPLAGD----RFVMGQYMSLHGDVISHVNISSVRVEDSGIY 77 (291)
Q Consensus 5 ~~~~~~~-~~v~~g~~v~l~C~~~~--~~~~~v~W~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y 77 (291)
+.+.|.. +.+.+|+++.|.|.+.+ .+.+.+.|++++..+... ...............+.|.|.+++.+|+|.|
T Consensus 10 v~i~p~~~v~v~~G~~v~L~C~~~g~p~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y 89 (122)
T 3s35_X 10 VVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLY 89 (122)
T ss_dssp EEEESCSCEEEEETCCEEEEEEEEECTTCCCEEEEECSCTTCCHHHHBCCSCCEEEETTEEEEEEEEEESSCCGGGCEEE
T ss_pred EEEcCCCCEEEecCCeEEEEEEEEcCCCCcEEEEEECCCcccCCceeeeeccccccCCceeeEEEEEEECCCCcccCEEE
Confidence 3444544 48999999999999987 445789999988744310 0000000000012346799999999999999
Q ss_pred EEEEeCCCCceeeeeeEEEEcCC
Q psy14540 78 QCTATNRVGSQTHSADMRVYDAP 100 (291)
Q Consensus 78 ~C~~~~~~~~~~~~~~l~v~~~~ 100 (291)
+|.+.|..|.....+.|.|...|
T Consensus 90 ~C~a~n~~g~~~~~~~l~V~~~p 112 (122)
T 3s35_X 90 TCAASSGLMTKKNSTFVRVHEKP 112 (122)
T ss_dssp EEEEECSSCEEEEEEEEEEEEEE
T ss_pred EEEEccCCCceEEEEEEEEeccC
Confidence 99999999988889999998765
No 443
>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=5.9e-14 Score=89.28 Aligned_cols=87 Identities=26% Similarity=0.408 Sum_probs=68.4
Q ss_pred cceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecC-CCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEe
Q psy14540 4 QLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLA-GDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTAT 82 (291)
Q Consensus 4 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~ 82 (291)
.....|....+.+|+.++|.|.+.+.| +.+.|++++..+. ..++... ...|.|.+++..|+|.|+|.+.
T Consensus 5 ~~~~~p~~~~v~~G~~v~L~C~~~g~p-p~i~W~k~g~~~~~~~~~~~~---------~~~L~i~~v~~~D~G~Y~C~a~ 74 (99)
T 2cr3_A 5 SSGVEVESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTRIT---------GEEVEVQDSVPADSGLYACVTS 74 (99)
T ss_dssp SCSCCEEECCBCTTSCEEEECCCCSSC-CEEEEEESSSBCCCCSSEEEC---------SSEEEETTCCTTTCEEEEEEEE
T ss_pred CCCCCCcCeEEeCCCcEEEEEEecCCC-CeEEEEECCEECCCCCcEEEE---------CCEEEEccCCHHHCEEEEEEEE
Confidence 334567778899999999999998876 6999999998776 2332221 1359999999999999999999
Q ss_pred CCCCceeeeeeEEEEcCC
Q psy14540 83 NRVGSQTHSADMRVYDAP 100 (291)
Q Consensus 83 ~~~~~~~~~~~l~v~~~~ 100 (291)
+..+.....+.|.|...+
T Consensus 75 n~~g~~~~~~~l~V~~~~ 92 (99)
T 2cr3_A 75 SPSGSDTTYFSVNVSDAL 92 (99)
T ss_dssp ETTEEEEEEEEECBCSCC
T ss_pred eCCceEEEEEEEEEecCC
Confidence 988887777777776544
No 444
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*
Probab=99.50 E-value=8.3e-14 Score=105.58 Aligned_cols=139 Identities=21% Similarity=0.256 Sum_probs=84.0
Q ss_pred CcceeecCCCceEEEEEeeC--CCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCC
Q psy14540 113 SRSIKVHSGDRAGVQCLVTK--GDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASD 190 (291)
Q Consensus 113 ~~~~~~~~g~~~~l~C~~~~--~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~ 190 (291)
+..+.+.+|+.+.|.|.+.. +.+.+.+.|++++............... . .... +..
T Consensus 12 ~~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~--~---~~~~-----------------~~~ 69 (268)
T 3mj6_A 12 SPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSN--L---SVPT-----------------GRF 69 (268)
T ss_dssp CCEEEEETTCCEEECCBCCCSSCCCEEEEEEEEESSSTTCCEEEEEEETT--E---EEEC-----------------GGG
T ss_pred CCceEEecCCcEEEEEEeecCCCCceEEEEEEEeCCCCCceEEEEEEcCC--C---cccC-----------------ccc
Confidence 34577889999999999831 5677889999966433222111100000 0 0000 000
Q ss_pred CCceEE--EEeccceEEEEeeeecCCCeeEEEEeeeCCccC--CceeEEEEecCCCCCCCCcccccCCceEEEEEEee--
Q psy14540 191 NHSSNL--RVNEYTSSLSIATLSTGHSGNYTCVASNTVASD--NHSSNLRVNVPPHIGPFTFGELMEGVRTQVACVVQ-- 264 (291)
Q Consensus 191 ~~~~~~--~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~--~~~~~l~v~~~p~~~~~~~~~~~~g~~v~l~C~~~-- 264 (291)
.....+ .......+|.|.++..+|+|.|+|.+.+..+.. ...+.|.|. |. .+....+.+|+.++|.|.+.
T Consensus 70 ~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~--~~--~p~~~~v~~G~~v~L~C~~~~~ 145 (268)
T 3mj6_A 70 QNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVL--PE--EPRDLRVRVGDTTQMRCSIQST 145 (268)
T ss_dssp TTTEEECSCTTTTBCCEEECSCCGGGCEEEEEEEEETTCCCEEEEEEEEEEE--CC--CCSEEEEETTCCEEECCBCEES
T ss_pred cCceEEeecCCCCEEEEEECCCCHhHCEEEEEEEEecCCcceEEEEEEEEEe--cc--CCCccccccCCcEEEEEEecCC
Confidence 000000 011224679999999999999999999876443 334444443 22 11223388999999999983
Q ss_pred cCCCCceEEEEEC
Q psy14540 265 SGDLPLSLQWYKN 277 (291)
Q Consensus 265 ~~~p~~~v~W~~~ 277 (291)
.+.|.+.+.|+++
T Consensus 146 ~~~p~~~v~W~~~ 158 (268)
T 3mj6_A 146 EEKRVTKVNWMFS 158 (268)
T ss_dssp SSSCCCEEEEEEE
T ss_pred CCCCccceEEEec
Confidence 4668899999994
No 445
>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens}
Probab=99.50 E-value=2.1e-14 Score=94.43 Aligned_cols=97 Identities=27% Similarity=0.477 Sum_probs=67.9
Q ss_pred CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCee-EeceEEeeccceEEE--EEEeecCCCCCeEEE
Q psy14540 2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRF-VMGQYMSLHGDVISH--VNISSVRVEDSGIYQ 78 (291)
Q Consensus 2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~-~~~~~~~~~~~~~~~--l~i~~~~~~d~G~y~ 78 (291)
||.|...|....+.+|+.+.|.|.+.+.|.+.+.|++++..+..... ............... |.+.+++..|+|.|+
T Consensus 9 pP~i~~~p~~~~v~~G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~D~G~Y~ 88 (117)
T 2v9t_A 9 PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYV 88 (117)
T ss_dssp EEEEEECCCCEEECTTCCEEECCEEEEESCCEEEEEETTEECCCTTTCSSCSEEECTTSCEEESSCCCBTTBCSSCEEEE
T ss_pred CCeeEcCCCCEEEcCCCcEEEEEECCccCCCeEEEEECCEeccccCCCCcceeEEecCCcEEEEEEEeCCCCcCcCEEEE
Confidence 78899889899999999999999999999999999999988763210 000111112222222 223366899999999
Q ss_pred EEEeCCCCce-eeeeeEEEEc
Q psy14540 79 CTATNRVGSQ-THSADMRVYD 98 (291)
Q Consensus 79 C~~~~~~~~~-~~~~~l~v~~ 98 (291)
|.+.|..|.. ...+.+.+..
T Consensus 89 C~a~N~~G~~~s~~~~l~~~~ 109 (117)
T 2v9t_A 89 CVARNYLGEAVSHDASLEVAA 109 (117)
T ss_dssp EEEEETTEEEECCCEEEEEC-
T ss_pred EEEEeCccceEeeeEEEEhhh
Confidence 9999988874 3445555554
No 446
>3rgv_A YAE62 TCR A chain; TCR, MHC, MHC class I, immune system; 2.90A {Mus musculus} PDB: 3c60_A
Probab=99.50 E-value=3.1e-13 Score=96.37 Aligned_cols=142 Identities=18% Similarity=0.224 Sum_probs=89.7
Q ss_pred cceeecceeeeecCCcEEEEEEecCCCCCeeEEEEC--CeecC-----C--C-eeEeceEEee--ccceEEEEEEeecCC
Q psy14540 4 QLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLD--GYPLA-----G--D-RFVMGQYMSL--HGDVISHVNISSVRV 71 (291)
Q Consensus 4 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~--~~~~~-----~--~-~~~~~~~~~~--~~~~~~~l~i~~~~~ 71 (291)
++++.|..+.+.+|++++|.|.+.+.....+.|++. |+... . . .....+.... .....++|+|.+++.
T Consensus 2 ~VtQ~p~~v~v~~G~svtL~C~~s~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~l~~ 81 (200)
T 3rgv_A 2 SVTQMQGQVTLSENDFLFINCTYSTTGYPTLFWYVQYSGEGPQLLLQVTTANNKGSSRGFEATYDKGTTSFHLQKTSVQE 81 (200)
T ss_dssp EEECCCSEEEEETTCCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTTTTBCCEEESSCCS
T ss_pred ccEECCCEEEEeCCCCEEEEEEecCCCCcEEEEEEeCCCCCcEEEEEecCCCCcccCCceEEEECCCCCEEEEEEcCCcC
Confidence 356778888999999999999998644568999983 32111 0 0 0011111111 233457899999999
Q ss_pred CCCeEEEEEEeCCC-CceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccC
Q psy14540 72 EDSGIYQCTATNRV-GSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILS 150 (291)
Q Consensus 72 ~d~G~y~C~~~~~~-~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~ 150 (291)
+|+|.|.|.+.... ......+.|.|......+.+.+..... ....++|.|.+...+|...+.|.++|..+..
T Consensus 82 ~DsG~Y~Ca~~~~~~~~fG~GT~L~V~~~~~~~~P~V~~~~~-------~~~~~tl~Cl~~gf~P~i~v~~~~~g~~~~~ 154 (200)
T 3rgv_A 82 IDSAVYYCAANSGTYQRFGTGTKLQVVPNIQNPDPAVYQLRD-------SKSSDKSVCLFTDFDSQTNVSQSKDSDVYIT 154 (200)
T ss_dssp TTCEEEEEEEESSSCCCCCCCEEEEEECCCSSCCCEEEEEEE-------SSSSSCEEEEEESCCTTCCCCCCSSTTCEEC
T ss_pred ccCCCEEEEeccCcccccCcCEEEEEeCCCCCCCCeEEEccC-------CCCCceEEEEcccccCCeEeEeccCCcEEee
Confidence 99999999986421 112334567776542111111111111 1133789999988888779999999988765
Q ss_pred CC
Q psy14540 151 DA 152 (291)
Q Consensus 151 ~~ 152 (291)
..
T Consensus 155 ~~ 156 (200)
T 3rgv_A 155 DK 156 (200)
T ss_dssp CC
T ss_pred cc
Confidence 44
No 447
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex, alternative splicing, ATP-binding, calcium, calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Probab=99.49 E-value=1.5e-13 Score=88.85 Aligned_cols=89 Identities=26% Similarity=0.537 Sum_probs=62.4
Q ss_pred CCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCC
Q psy14540 112 NSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDN 191 (291)
Q Consensus 112 ~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~ 191 (291)
.+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+....+..+...+
T Consensus 19 ~~~~~~v~~G~~v~l~C~~-~g~p~p~i~W~~~~~~~~~~~~~~~~~~~------------------------------- 66 (107)
T 3irg_B 19 FPRPVRVVSGAEAELKCVV-LGEPPPVVVWEKGGQQLAASERLSFPADG------------------------------- 66 (107)
T ss_dssp CCCCEEEETTSCEEEEEEE-EEESCCEEEEEETTEECCCCSSEECCEET-------------------------------
T ss_pred CCccEEEeCCCeEEEEEEE-eecCCCEEEEEECCeECCCCCcEEEEeCC-------------------------------
Confidence 3455788899999999999 68899999999999888655443322111
Q ss_pred CceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCC
Q psy14540 192 HSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPP 241 (291)
Q Consensus 192 ~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p 241 (291)
....|.|.++..+|+|.|+|.|.|..+.....+.|.|..+|
T Consensus 67 ---------~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~P 107 (107)
T 3irg_B 67 ---------AEHGLLLTAALPTDAGVYVCRARNAAGEAYAAAAVTVLEPP 107 (107)
T ss_dssp ---------TEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC--
T ss_pred ---------CEEEEEEccCCHHhCEEEEEEEEcCCCcEEEEEEEEEEcCC
Confidence 12356667777777777777777777766677777776554
No 448
>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus}
Probab=99.49 E-value=2.9e-13 Score=102.01 Aligned_cols=146 Identities=18% Similarity=0.271 Sum_probs=83.4
Q ss_pred cceeecCCCceEEEEEeeCCCC--CceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCC
Q psy14540 114 RSIKVHSGDRAGVQCLVTKGDP--PLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDN 191 (291)
Q Consensus 114 ~~~~~~~g~~~~l~C~~~~~~p--~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~ 191 (291)
....+.+|+.++|.|.+ .+.+ .+.+.|+++... .... +.+..........| .. ...
T Consensus 14 ~~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~r~~~g----~~~~----------~l~~~~~~~~~~~~-----~~--~~~ 71 (261)
T 2xqy_G 14 GAELVKPGASVKMSCKA-SGYSFTSYWMNWVKQRPG----RGLE----------WIGRIDPSDNETHY-----NQ--DFK 71 (261)
T ss_dssp SEEEECTTCCEEEEEEE-ESSCGGGSCEEEEEECTT----SCEE----------EEEEECTTTCCEEE-----CG--GGT
T ss_pred CCEEEcCCCCEEEEEEe-CCcccCCceEEEEEeCCC----CCcE----------EEEEEecCCCceee-----CC--ccC
Confidence 45678899999999999 4555 578999986310 0000 00000000000000 00 000
Q ss_pred CceEEEE--eccceEEEEeeeecCCCeeEEEEeeeCCc---cCCceeEEEEec----CCCCCCCC-cccccCCceEEEEE
Q psy14540 192 HSSNLRV--NEYTSSLSIATLSTGHSGNYTCVASNTVA---SDNHSSNLRVNV----PPHIGPFT-FGELMEGVRTQVAC 261 (291)
Q Consensus 192 ~~~~~~~--~~~~~~l~i~~~~~~~~g~y~C~~~~~~~---~~~~~~~l~v~~----~p~~~~~~-~~~~~~g~~v~l~C 261 (291)
..+.+.. ......|.|.++..+|+|.|.|.+.+..+ .......|.|.. +|.+.... ...+.+|+.++|.|
T Consensus 72 ~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p~~~v~~g~~v~L~C 151 (261)
T 2xqy_G 72 DKVTLTVDKSSSTVYIQLSSLTSEDSAVYYCGRLGYVYGFDYWGQGTTLTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGC 151 (261)
T ss_dssp TTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEECCCCC--CCSEEEEEE
T ss_pred CcEEEEecCCCCEEEEEEcCCCcccCeEEEEEEecCCCcceEECCCEEEEEccCCCCCCeEEEeCCCccccCCCcEEEEE
Confidence 1111111 12346799999999999999999988532 122334677764 34333222 22367899999999
Q ss_pred EeecCCCCc-eEEEEECCEEc
Q psy14540 262 VVQSGDLPL-SLQWYKNGLAI 281 (291)
Q Consensus 262 ~~~~~~p~~-~v~W~~~~~~l 281 (291)
.+.+.+|.+ .|.|++++..+
T Consensus 152 ~~~g~~P~~i~v~W~k~g~~~ 172 (261)
T 2xqy_G 152 LVKGYFPEPVTLTWNSGSLSS 172 (261)
T ss_dssp EEEEEBSSCCEEEEGGGTCCT
T ss_pred EEEeEeCCCCEEEEecCCCcC
Confidence 994445765 99999999865
No 449
>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4
Probab=99.49 E-value=2.2e-13 Score=89.63 Aligned_cols=95 Identities=16% Similarity=0.266 Sum_probs=68.8
Q ss_pred CCcceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCe-eEeceEEeeccceEEEEEEeecCCCCCeEEEEE
Q psy14540 2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDR-FVMGQYMSLHGDVISHVNISSVRVEDSGIYQCT 80 (291)
Q Consensus 2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~ 80 (291)
||.|...... . ..+...|.|.+.+.|.+.+.|+++|..+.... ..... ..........|.|.+++..|+|.|+|.
T Consensus 8 pP~i~~~~~~-~--~~~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~-~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 83 (118)
T 1wwc_A 8 PPRVVSLEEP-E--LRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEY-YQEGEISEGCLLFNKPTHYNNGNYTLI 83 (118)
T ss_dssp CCCCCCCCCC-C--CCCEEEEEEEEECSSCCEEEEEETTEECCCSSSEEEEE-EECSSEEEEEEEEESCCGGGCEEEEEE
T ss_pred CCceeccCCC-e--eccceEEEEEeeeeCCCeEEEEECCEECCCCCceeEEE-eccCccccEEEEECCCChhcCEEEEEE
Confidence 5665544322 2 23667899999999999999999999887432 22211 111112346799999999999999999
Q ss_pred EeCCCCceeeeeeEEEEcCC
Q psy14540 81 ATNRVGSQTHSADMRVYDAP 100 (291)
Q Consensus 81 ~~~~~~~~~~~~~l~v~~~~ 100 (291)
+.|..|.....+.+.|...|
T Consensus 84 a~N~~G~~~~~~~l~v~~~P 103 (118)
T 1wwc_A 84 AKNPLGTANQTINGHFLKEP 103 (118)
T ss_dssp EEETTEEEEEEEEECCSCCC
T ss_pred EECCCCeEeeEEEEEEccCC
Confidence 99999988888888777655
No 450
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0
Probab=99.49 E-value=1.2e-13 Score=89.40 Aligned_cols=89 Identities=21% Similarity=0.447 Sum_probs=58.6
Q ss_pred cCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCC
Q psy14540 111 SNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASD 190 (291)
Q Consensus 111 ~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~ 190 (291)
..+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+..........
T Consensus 15 ~~~~~~~v~~G~~v~l~C~~-~g~p~p~i~W~~~~~~~~~~~~~~~~~-------------------------------- 61 (108)
T 3kvq_A 15 GNLENQTTSIGESIEVSCTA-SGNPPPQIMWFKDNETLVEDSGIVLKD-------------------------------- 61 (108)
T ss_dssp SCCCCEEEETTCCEEEECBC-C----CCEEEEESSSBCCCBTTEEEET--------------------------------
T ss_pred cCCCCeEEeCCCeEEEEEEC-cCcCCCeEEEEECCeEcccCCCeEEeC--------------------------------
Confidence 33456788899999999999 688999999999998775543332211
Q ss_pred CCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCCC
Q psy14540 191 NHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPH 242 (291)
Q Consensus 191 ~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p~ 242 (291)
....|.|.++..+|+|.|+|.|.|..|.....+.|.|..+|.
T Consensus 62 ----------~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~ 103 (108)
T 3kvq_A 62 ----------GNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQE 103 (108)
T ss_dssp ----------TTTEEEECSCCGGGCEEEEEEEC----CEEEEEEEEEEC---
T ss_pred ----------CCcEEEEeecCcccCEEEEEEEEeCCCceEEEEEEEEeCCCc
Confidence 134677788888888888888888888877788888876654
No 451
>2aty_A Complement receptor chimeric conjugate CR2-IG; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}
Probab=99.49 E-value=2.3e-13 Score=108.16 Aligned_cols=130 Identities=12% Similarity=0.245 Sum_probs=85.0
Q ss_pred ecCCCceEEEEEeeCCC---CC-ceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCc
Q psy14540 118 VHSGDRAGVQCLVTKGD---PP-LTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHS 193 (291)
Q Consensus 118 ~~~g~~~~l~C~~~~~~---p~-~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~ 193 (291)
+..|+.++|.|.+. +. |. ..|.|++++..+...... .......|.|.-
T Consensus 180 ~~~g~~v~L~C~~~-g~~P~p~~~~v~W~k~~~~~~~~~~~---------------~~~~~~~~~~~~------------ 231 (376)
T 2aty_A 180 LTITLTPKVTCVVV-DISKDDPEVQFSWFVDDVEVHTAQTQ---------------PREEQFNSTFRS------------ 231 (376)
T ss_pred eeeCCeeEEEEEEe-ccccCCCccEEEEEECCccccCcccC---------------CCCcccCCcEEE------------
Confidence 67899999999995 54 32 479999998655321100 000111222221
Q ss_pred eEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEE----EEecCCCCCCCCccc-ccCCceEEEEEEeecCCC
Q psy14540 194 SNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNL----RVNVPPHIGPFTFGE-LMEGVRTQVACVVQSGDL 268 (291)
Q Consensus 194 ~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l----~v~~~p~~~~~~~~~-~~~g~~v~l~C~~~~~~p 268 (291)
...|.|..+..+|+|.|+|.+.+..+.......+ .+..+|.+...+... ...|+.++|.|.+.+.+|
T Consensus 232 --------~s~L~I~~~~~~D~g~Y~C~~~~~~~~~~~~~~v~~~~~~~~~P~v~v~~~~~~~~~g~~~~L~C~~~g~~P 303 (376)
T 2aty_A 232 --------VSELPIMHQDWLNGKEFKCRVNSAAFPAPIEKTISKTKGRPKAPQLYTIPPPKEQMAKDKVSLTCMITDFFP 303 (376)
T ss_pred --------EEEEEechHhccCCCEEEEEEecCCCCCceEEEEcCCCCCCcCCeEEeeCCCHHHhcCCceEEEEEEEEeEC
Confidence 3457888888889999999998876543332233 344567776655544 556899999999944445
Q ss_pred -CceEEEEECCEEccC
Q psy14540 269 -PLSLQWYKNGLAISQ 283 (291)
Q Consensus 269 -~~~v~W~~~~~~l~~ 283 (291)
.+.|+|+|||.++..
T Consensus 304 ~~i~v~W~k~g~~~~~ 319 (376)
T 2aty_A 304 EDITVEWQWNGQPAEN 319 (376)
T ss_pred CCcEEEEEECCEECCC
Confidence 469999999998743
No 452
>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}
Probab=99.49 E-value=6.1e-13 Score=100.13 Aligned_cols=145 Identities=15% Similarity=0.192 Sum_probs=84.1
Q ss_pred cCCcceeecCCCceEEEEEeeCC-CCCceeEEeECCEeccCCCceEEecc-CCceEEEEEeeCCCCCceeEEEEEEecCC
Q psy14540 111 SNSRSIKVHSGDRAGVQCLVTKG-DPPLTISWLKNGLPILSDAEITIRSS-GEYTSSLSIATLSTGHSGNYTCVASNTVA 188 (291)
Q Consensus 111 ~~~~~~~~~~g~~~~l~C~~~~~-~p~~~~~W~~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~g~y~C~~~~~~~ 188 (291)
..+..+.+.+|+.++|.|.+... .+.+.+.|++..... ......... .... . .......+.|.-...
T Consensus 11 ~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~--~~~~~~~~~~~~~~--~---~~~~~~~~R~~~~~~---- 79 (256)
T 3juy_B 11 VQSGAEVKKPGASVKVSCQASGYRFSHFTVHWVRQAPGQ--RFEWMGWINPYNGN--K---EFSAKFQDRVTFTAD---- 79 (256)
T ss_dssp EECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTS--CCEEEEEEETTTTE--E---EECTTTTTTEEEEEE----
T ss_pred EecCCceecCCCeEEEEEEeecccccCceEEEEEECCCC--CcEEEEEEEcCCCc--E---eecccCcceEEEEEe----
Confidence 34456788999999999998432 367799999843110 000000000 0000 0 000011112211100
Q ss_pred CCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeC------------CccCCceeEEEEecCC---------------
Q psy14540 189 SDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNT------------VASDNHSSNLRVNVPP--------------- 241 (291)
Q Consensus 189 ~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~------------~~~~~~~~~l~v~~~p--------------- 241 (291)
......+|.|.++..+|+|.|.|.+.+. .........|.|..++
T Consensus 80 ---------~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~ 150 (256)
T 3juy_B 80 ---------TSANTAYMELRSLRSADTAVYYCARVGEWGWDDSPYDNYYMDVWGKGTTVIVSSGGGGSGGGGSGGGGSEI 150 (256)
T ss_dssp ---------TTTTEEEEEECSCCGGGCEEEEEEECCCCCTTCCTTTTCSCCEECCCEEEEECSCC----------CCCCC
T ss_pred ---------cCCCEEEEEECCCCcccCEEEEEeEEeccccccccccccceeEECCceEEeecCCcccccccccCCCccee
Confidence 1122457889999999999999999886 2333445567776532
Q ss_pred CCCCCCccc-ccCCceEEEEEEeecCCCC-ceEEEEE
Q psy14540 242 HIGPFTFGE-LMEGVRTQVACVVQSGDLP-LSLQWYK 276 (291)
Q Consensus 242 ~~~~~~~~~-~~~g~~v~l~C~~~~~~p~-~~v~W~~ 276 (291)
.+...+... +.+|+.++|.|.+ .+.|. +.+.|+|
T Consensus 151 ~~~~~~~~~~v~~G~~v~L~C~~-~~~~~~~~v~W~k 186 (256)
T 3juy_B 151 VLTQAPGTLSLSPGERATFSCRS-SHSIRSRRVAWYQ 186 (256)
T ss_dssp CEEEECSEEEECTTSCEEEEEEE-SSCCTTCCEEEEE
T ss_pred EEEecCCeEEEeCCCCEEEEEEE-CCCcCCeeEEEEE
Confidence 233323333 8999999999999 66665 8999998
No 453
>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}
Probab=99.49 E-value=2.4e-13 Score=102.32 Aligned_cols=140 Identities=11% Similarity=0.211 Sum_probs=81.2
Q ss_pred CCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCC
Q psy14540 112 NSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDN 191 (291)
Q Consensus 112 ~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~ 191 (291)
.+..+.+.+|+.++|.|.+ .+.|.+.+.|++..... ............. .. ...+.|...
T Consensus 9 ~p~~~~v~~G~~v~L~C~~-~~~~~~~v~W~r~~~~~--~~~~~~~~~~~~~-~~-------~~~~r~~~~--------- 68 (256)
T 3tf7_C 9 PDARVTVSEGASLQLRCKY-SYSATPYLFWYVQYPRQ--GPQMLLKYYSGDP-VV-------QGVNGFEAE--------- 68 (256)
T ss_dssp SCSEEEEETTSCEEECCEE-ECSSCCEEEEEEECTTS--CCEEEEEECSSCS-EE-------ECSTTCEEE---------
T ss_pred cCceEEecCCCeEEEEEEe-CCCCCceEEEEEECCCC--CeEEEEEEccCCc-cc-------ccCCCeEEE---------
Confidence 3455788899999999999 57789999999842110 0000000000000 00 000111110
Q ss_pred CceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCcc----CCceeEEEEec--------------------CCCCCCCC
Q psy14540 192 HSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVAS----DNHSSNLRVNV--------------------PPHIGPFT 247 (291)
Q Consensus 192 ~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~----~~~~~~l~v~~--------------------~p~~~~~~ 247 (291)
........+|.|.++..+|+|.|.|.+.+..+. ......|.|.. +|.+...+
T Consensus 69 ----~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p 144 (256)
T 3tf7_C 69 ----FSKSDSSFHLRKASVHRSDSAVYFCAVSAKGTGSKLSFGKGAKLTVSPGGGGSGGGGSGGGGSGGGGSEAAVTQSP 144 (256)
T ss_dssp ----EETTTTEEEEEESSCCGGGCSEEEEEEECTTCTTCEEECCCEEEEEEC---------------------CCEEESC
T ss_pred ----EcCCCCEEEEEECCCCcccCEEEEEEEecCCCccceEECCCeEEEEeCCCCCcCCCCcCcccCCCCcCccEEEecC
Confidence 011123456888888888888888888776431 22234555554 34444444
Q ss_pred ccc-ccCCceEEEEEEeecCCCCceEEEEEC
Q psy14540 248 FGE-LMEGVRTQVACVVQSGDLPLSLQWYKN 277 (291)
Q Consensus 248 ~~~-~~~g~~v~l~C~~~~~~p~~~v~W~~~ 277 (291)
... +.+|+.++|.|.+ .+. .+.+.|+|.
T Consensus 145 ~~~~v~~G~~v~L~C~~-~~~-~~~v~W~k~ 173 (256)
T 3tf7_C 145 RNKVTVTGENVTLSCRQ-TNS-HNYMYWYRQ 173 (256)
T ss_dssp SEEEEETTCCEEECEEE-CSC-CSEEEEEEE
T ss_pred CEEEEeCCCcEEEEEEc-CCC-ceEEEEEEE
Confidence 444 7799999999999 555 668999983
No 454
>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1
Probab=99.49 E-value=1e-14 Score=96.76 Aligned_cols=97 Identities=28% Similarity=0.441 Sum_probs=76.0
Q ss_pred CCcceeecceeeeecCCcEEEEEEecCCCCCe-eEEEECCeecCC---CeeEeceEEeeccceEEEEEEeecCCCCC-eE
Q psy14540 2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPH-ISWKLDGYPLAG---DRFVMGQYMSLHGDVISHVNISSVRVEDS-GI 76 (291)
Q Consensus 2 ~p~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~-v~W~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~i~~~~~~d~-G~ 76 (291)
||.|.. +....+.+|+.+.|.|.+.+.|.+. +.|++++..+.. .++.... ........+.|.|.+++..|. |.
T Consensus 14 ~P~i~~-~~~~~~~~G~~v~l~C~~~g~P~p~~i~W~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~L~I~~v~~~D~~G~ 91 (122)
T 2cry_A 14 PPIISS-TQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVET-ISTEEGVISTLTISNIVRADFQTI 91 (122)
T ss_dssp SCCEEE-ECCCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEE-EEETTEEEEEEECTTCCHHHHHSC
T ss_pred CCCccC-CCeEEEecCCCEEEEEEEeecCCCcEeEEEECCEEccCCCCCCEEEEE-ecCCCceEEEEEEcCCChhhCCce
Confidence 688877 8888999999999999999988887 999999988763 2222211 111222357899999999999 99
Q ss_pred EEEEEeCCCCceeeeeeEEEEcCC
Q psy14540 77 YQCTATNRVGSQTHSADMRVYDAP 100 (291)
Q Consensus 77 y~C~~~~~~~~~~~~~~l~v~~~~ 100 (291)
|+|.+.|..|.....+.|.|...+
T Consensus 92 Y~C~a~N~~G~~~~~~~l~V~~~~ 115 (122)
T 2cry_A 92 YNCTAWNSFGSDTEIIRLKEQGSE 115 (122)
T ss_dssp EEEEEECSSCEEEEEECCCCSCSS
T ss_pred EEEEEECCCCeEEEEEEEEECCCC
Confidence 999999999998888887776543
No 455
>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E 2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D* 3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E 3kxf_E 2cde_B ...
Probab=99.49 E-value=2.1e-13 Score=102.34 Aligned_cols=148 Identities=13% Similarity=0.265 Sum_probs=85.1
Q ss_pred CCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCC
Q psy14540 112 NSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDN 191 (291)
Q Consensus 112 ~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~ 191 (291)
.+..+.+.+|+.++|.|.+ . .+.+.+.|+++...- ... +.+..... +.+ .. +...
T Consensus 9 ~p~~v~v~~G~~v~L~C~~-~-~~~~~v~W~r~~~~~----~~~----------~l~~~~~~---~~~----~~--~~~~ 63 (252)
T 1oga_E 9 SPKYLFRKEGQNVTLSCEQ-N-LNHDAMYWYRQDPGQ----GLR----------LIYYSQIV---NDF----QK--GDIA 63 (252)
T ss_dssp SCSEEEEETTCCEEECCEE-C-SCCSEEEEEEECTTC----CEE----------EEEEESST---TCC----EE--CSSC
T ss_pred cCCeEEEcCCCcEEEEEEe-C-CCCCEEEEEEECCCC----CeE----------EEEEEccC---ccc----cC--CccC
Confidence 3455788999999999998 3 357899999853110 000 00000000 000 00 0000
Q ss_pred CceEEEE-eccceEEEEeeeecCCCeeEEEEeeeCC---ccCCceeEEEEec------CCCCCCCCcc--cccCCceEEE
Q psy14540 192 HSSNLRV-NEYTSSLSIATLSTGHSGNYTCVASNTV---ASDNHSSNLRVNV------PPHIGPFTFG--ELMEGVRTQV 259 (291)
Q Consensus 192 ~~~~~~~-~~~~~~l~i~~~~~~~~g~y~C~~~~~~---~~~~~~~~l~v~~------~p~~~~~~~~--~~~~g~~v~l 259 (291)
..+.+.. ......|.|.++..+|+|.|.|.+.+.. ........|.|.. +|.+...... .+.+|+.++|
T Consensus 64 ~R~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L 143 (252)
T 1oga_E 64 EGYSVSREKKESFPLTVTSAQKNPTAFYLCASSSRSSYEQYFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATL 143 (252)
T ss_dssp TTEEECCSSTTBCCEEECSCCSCCCEEEEEEEESSTTSCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEE
T ss_pred CcEEEEecCCCEEEEEECcCChhhCEEEEEEEecCCccceeECCCEEEEEecccCCCCCCeEEEECCChhhhccCCceEE
Confidence 0111110 0124578899999999999999998752 1112233456543 4544433222 1557999999
Q ss_pred EEEeecCCCC-ceEEEEECCEEccCC
Q psy14540 260 ACVVQSGDLP-LSLQWYKNGLAISQP 284 (291)
Q Consensus 260 ~C~~~~~~p~-~~v~W~~~~~~l~~~ 284 (291)
.|.+.+.+|. +.|.|+|||..+..+
T Consensus 144 ~C~~~g~~P~~~~v~W~~~g~~l~~~ 169 (252)
T 1oga_E 144 VCLATGFYPDHVELSWWVNGKEVHSG 169 (252)
T ss_dssp EEEEEEEBSSCEEEEEEETTEEECSS
T ss_pred EEEEeeEcCCCcEEEEEECCEECCCC
Confidence 9999444565 599999999988654
No 456
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=2.9e-13 Score=87.93 Aligned_cols=90 Identities=27% Similarity=0.390 Sum_probs=60.6
Q ss_pred CCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCC-CceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCC
Q psy14540 112 NSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSD-AEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASD 190 (291)
Q Consensus 112 ~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~ 190 (291)
.+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+... .++.+.....+..
T Consensus 14 ~~~~~~v~~G~~v~l~C~~-~g~p~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~-------------------------- 66 (110)
T 2dm2_A 14 KLKHYKIFEGMPVTFTCRV-AGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTC-------------------------- 66 (110)
T ss_dssp CCCCEEEETTCCEEEEEEB-CCSSCCEEEEECSSCBCCTTCSSEEEEECTTCEE--------------------------
T ss_pred cCcCeEEeCCCeEEEEEEE-EecCCCEEEEEECCEECCCCCCeEEEEECCCcEE--------------------------
Confidence 3455788999999999999 68999999999999887652 3333332222222
Q ss_pred CCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCC
Q psy14540 191 NHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPP 241 (291)
Q Consensus 191 ~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p 241 (291)
.|.|.++..+|+|.|+|.|.|..+.....+.|.|..+|
T Consensus 67 -------------~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~~ 104 (110)
T 2dm2_A 67 -------------SLHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQAVN 104 (110)
T ss_dssp -------------EEEESSCCTTTCSCCEEEEECTTCCEEECCCEEEECCS
T ss_pred -------------EEEECCCChhhCEEEEEEEEECCCeEEEEEEEEEECCC
Confidence 35555556666666666666666666666666666554
No 457
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=4.1e-13 Score=88.36 Aligned_cols=87 Identities=16% Similarity=0.367 Sum_probs=59.3
Q ss_pred CcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCC
Q psy14540 113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNH 192 (291)
Q Consensus 113 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~ 192 (291)
.....+.+|+.+.|.|.+ .|.|.+.+.|++++..+.. .+..+.. ...
T Consensus 31 ~~~~~v~~G~~~~l~C~~-~g~P~p~i~W~k~g~~l~~-~~~~~~~-~~~------------------------------ 77 (118)
T 2e7c_A 31 RQTYIRKVGEQLNLVVPF-QGKPRPQVVWTKGGAPLDT-SRVHVRT-SDF------------------------------ 77 (118)
T ss_dssp SSCEEEESSSCEEEEEEE-EEESCCEEEEEETTEECCC-SSCEEEE-CSS------------------------------
T ss_pred CCCEEEECCCEEEEEEEE-ccCCCCEEEEEECCEECCC-CcEEEEE-CCC------------------------------
Confidence 355788899999999999 6899999999999988852 2222211 111
Q ss_pred ceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCC
Q psy14540 193 SSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPP 241 (291)
Q Consensus 193 ~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p 241 (291)
...|.|.++...|+|.|+|.|.|..|..+..+.|.|..+|
T Consensus 78 ---------~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~P 117 (118)
T 2e7c_A 78 ---------DTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRVVEKA 117 (118)
T ss_dssp ---------EEEEEESSCCTTTCEEEEEEEECSSCEECCEEEEEEECCC
T ss_pred ---------eEEEEECCCChhcCEEEEEEEEeCCCeEEEEEEEEEEcCC
Confidence 2345666666666666666666666666666666666554
No 458
>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4
Probab=99.48 E-value=2e-13 Score=86.71 Aligned_cols=86 Identities=22% Similarity=0.382 Sum_probs=64.8
Q ss_pred Cccee-ecceeeeecCCcEEEEEEec-CCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEE
Q psy14540 3 PQLIY-KFIQQTLQPGPPVSLKCIAT-GNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCT 80 (291)
Q Consensus 3 p~~~~-~~~~~~v~~g~~v~l~C~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~ 80 (291)
|.+.. .+....+.+|++++|.|.+. +.|.+.+.|++++......... ... .+|.|.+++.+|+|.|+|.
T Consensus 10 ~~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~-----~~~----~~L~i~~v~~~D~G~Y~C~ 80 (98)
T 1gl4_B 10 IMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAM-----DFN----GILTIRNVQPSDAGTYVCT 80 (98)
T ss_dssp EEEEECSCCEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCCTTEE-----EET----TEEEECSCCGGGCEEEEEE
T ss_pred cEEEEeCCCCeEEecCCCEEEEEeCCCCCCCcEEEEEeCCCCCCCceee-----cCC----CEEEEeCCChhhCEEEEEE
Confidence 34443 44667899999999999998 5888999999975443322111 011 2599999999999999999
Q ss_pred EeCCCCceeeeeeEEEE
Q psy14540 81 ATNRVGSQTHSADMRVY 97 (291)
Q Consensus 81 ~~~~~~~~~~~~~l~v~ 97 (291)
+.|..|.....+.|.|.
T Consensus 81 a~n~~g~~~~~~~l~V~ 97 (98)
T 1gl4_B 81 GSNMFAMDQGTATLHVQ 97 (98)
T ss_dssp EECSSCEEEEEEEEEEC
T ss_pred ecCCCCccccEEEEEEe
Confidence 99998888877777764
No 459
>1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2
Probab=99.48 E-value=4.9e-13 Score=98.91 Aligned_cols=145 Identities=19% Similarity=0.183 Sum_probs=84.6
Q ss_pred CcceeecCCCceEEEEEeeCCC--CCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCC-----CCceeEEEEEEe
Q psy14540 113 SRSIKVHSGDRAGVQCLVTKGD--PPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLST-----GHSGNYTCVASN 185 (291)
Q Consensus 113 ~~~~~~~~g~~~~l~C~~~~~~--p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-----~d~g~y~C~~~~ 185 (291)
+..+.+.+|+.++|.|.+ .+. +...+.|++....- ..... +....-.. ...+.|.....
T Consensus 8 p~~v~~~~G~~v~L~C~~-~~~~~~~~~v~W~r~~~~~--~~~~l----------~~~~~~~~~~~~~~~~~R~~~~~~- 73 (230)
T 1ypz_F 8 EISISRPRDETAQISCKV-FIESFRSVTIHWYRQKPNQ--GLEFL----------LYVLATPTHIFLDKEYKKMEASKN- 73 (230)
T ss_dssp CSEEEEETTSCEEEEEEE-CCGGGGGCCEEEEEECTTT--CCEEE----------EEECSSCCCEEEESSSSEEEEEEC-
T ss_pred CCEEEEeCCCcEEEEEEe-eccccCccEEEEEEECCCC--CCEEE----------EEEecCCeeecCcccCCeEEEEEc-
Confidence 445778899999999998 443 56789999853110 00000 00000000 01112211100
Q ss_pred cCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeC--Cc--cCCceeEEEEec---------CCCCCCCCc-c-c
Q psy14540 186 TVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNT--VA--SDNHSSNLRVNV---------PPHIGPFTF-G-E 250 (291)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~--~~--~~~~~~~l~v~~---------~p~~~~~~~-~-~ 250 (291)
.......|.|.++..+|+|.|.|.+.+. .. .......|.|.. +|....... . .
T Consensus 74 ------------~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~l~~~~~p~~~v~~p~~~~ 141 (230)
T 1ypz_F 74 ------------PSASTSILTIYSLEEEDEAIYYCSYGEGSSGFHKVFAEGTKLIVIPSDKRLDADISPKPTIFLPSVAE 141 (230)
T ss_dssp ------------CTTTEEEEEECSCCGGGCSEEEEEECCTTTCCCCEECSCEEEEEECCCTTCCSCCSCCCCEECCCHHH
T ss_pred ------------CCCCEEEEEECcCChhhCEEEEEEEECCCCCcccccCCCEEEEEecccccCcccCCCCceEECCCchh
Confidence 0012457999999999999999999874 11 122334677751 233332221 1 1
Q ss_pred ccCCceEEEEEEeecCCCC-ceEEEEE-CCEEccC
Q psy14540 251 LMEGVRTQVACVVQSGDLP-LSLQWYK-NGLAISQ 283 (291)
Q Consensus 251 ~~~g~~v~l~C~~~~~~p~-~~v~W~~-~~~~l~~ 283 (291)
+..|+.++|.|.+.+.+|. +.|.|++ ||+.|.+
T Consensus 142 v~~g~~~~L~C~~~g~~P~~~~v~W~~~~g~~l~~ 176 (230)
T 1ypz_F 142 TNLHKTGTYLCLLEAFFPDVIRVYWKEKDGNTILD 176 (230)
T ss_dssp HHHHSCEEEEEEEEEESSCCCEEEEECTTSSCBCC
T ss_pred hccCCcceEEEEEeeecCCCeEEEEEccCCeEccc
Confidence 5679999999999545575 6999999 8887753
No 460
>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens}
Probab=99.48 E-value=3.9e-13 Score=89.27 Aligned_cols=93 Identities=16% Similarity=0.318 Sum_probs=70.2
Q ss_pred cceeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeec---------CCCeeEeceEEeeccceEEEEEEeecCCCCC
Q psy14540 4 QLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPL---------AGDRFVMGQYMSLHGDVISHVNISSVRVEDS 74 (291)
Q Consensus 4 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~---------~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~ 74 (291)
.++..+....+.+|++++|.|.+.+.+.+.+.|++++..+ ...++... .......+|.|.+++.+|+
T Consensus 3 ~~~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~r~~~~----~~~~~~~~L~I~~v~~~Ds 78 (124)
T 3rbg_A 3 SLTNHTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLL----HHSANQLSITVPNVTLQDE 78 (124)
T ss_dssp -CCCSEEEEEEETTSCEEEEEECCCCTTCEEEEECTTSCEEEETTEECSCSSCCEEE----EEETTEEEEEESSCCGGGC
T ss_pred cccCCCccEEEcCCCCEEEEeEEeccCCCEEEEECCCCeEEEEeccccccCCcEEEE----eCCCCEEEEEECCCChHHC
Confidence 3556778889999999999999998888999999865432 12222221 1223357899999999999
Q ss_pred eEEEEEEeCCCCceeeeeeEEEEcCCC
Q psy14540 75 GIYQCTATNRVGSQTHSADMRVYDAPG 101 (291)
Q Consensus 75 G~y~C~~~~~~~~~~~~~~l~v~~~~~ 101 (291)
|.|+|.+.+. +.....+.|.|...|.
T Consensus 79 G~Y~C~a~n~-g~~~~~~~l~V~~~P~ 104 (124)
T 3rbg_A 79 GVYKCLHYSD-SVSTKEVKVIVLATMK 104 (124)
T ss_dssp EEEEEEEESS-SEEEEEEEEEEECC--
T ss_pred EEEEEEEEcC-CCCcEEEEEEEEeCCC
Confidence 9999999988 8888888999987663
No 461
>2eys_A NKT15; natural killer T cell receptor, immune system; 2.21A {Homo sapiens} PDB: 2eyr_A 2eyt_A 3huj_E* 3tyf_A 3tzv_A* 3sdx_E* 2po6_C* 2cde_A 3to4_C*
Probab=99.48 E-value=1.4e-12 Score=94.48 Aligned_cols=164 Identities=17% Similarity=0.244 Sum_probs=93.7
Q ss_pred cceeecceeeeecCCcEEEEEEecCCCCCeeEEEEC--Ceec-------C-CCeeEeceEEe--eccceEEEEEEeecCC
Q psy14540 4 QLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLD--GYPL-------A-GDRFVMGQYMS--LHGDVISHVNISSVRV 71 (291)
Q Consensus 4 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~--~~~~-------~-~~~~~~~~~~~--~~~~~~~~l~i~~~~~ 71 (291)
.+.+.|..+.+.+|++++|.|.+.+.....+.||+. ++.. . .......++.. ......++|+|.+++.
T Consensus 5 ~v~Q~p~~~~v~~G~svtL~C~~s~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~~~~ 84 (210)
T 2eys_A 5 QVEQSPQSLIILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITASQL 84 (210)
T ss_dssp CEEEECSEEEEETTCCEEEEEEECCSSCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESSCCG
T ss_pred eEEEeCCEEEEecCCCEEEEEEECCCCCCeEEEEEeCCCCCCEEEEEEecCCCCccCCCEEEEEcCCCCEEEEEEccCCc
Confidence 456668888999999999999998755568999984 2211 1 00001111111 1233457899999999
Q ss_pred CCCeEEEEEEeCCC---Cc--eeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCE
Q psy14540 72 EDSGIYQCTATNRV---GS--QTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGL 146 (291)
Q Consensus 72 ~d~G~y~C~~~~~~---~~--~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~ 146 (291)
+|+|.|.|.+.+.. .. ......|.|......+.+....... ....++|.|.+...+|.+.+.+-..
T Consensus 85 ~Dsg~Y~C~~~~~~~~~~~~~fg~gt~L~V~~~~~~~~P~V~~~~~-------~~~~~tl~Cl~~gf~P~~~v~~~~~-- 155 (210)
T 2eys_A 85 SDSASYICVVSDRGSTLGRLYFGRGTQLTVWPDIQNPDPAVYQLRD-------SKSSDKSVCLFTDFDSQTNVSQSKD-- 155 (210)
T ss_dssp GGCEEEEEEEESCSSTTCCEEECCCEEEEEECCCSSCCCEEEEECC-------CSSSSCEEEEEESCCTTCCCCCCSS--
T ss_pred ccCceEEEEEEccCCCcccceECCCEEEEEECCCCCCCCeEEecCC-------CCCCceEEEEcccccCCcEeccccC--
Confidence 99999999998632 11 1233567776542211111111111 1227899999976677655422111
Q ss_pred eccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEe
Q psy14540 147 PILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASN 185 (291)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~ 185 (291)
.. .... ....|.+..+...+.|.|.|.+.+
T Consensus 156 -----~~-~~~t---~~~~l~~~~~~~~~~~~~~w~~~~ 185 (210)
T 2eys_A 156 -----SD-VYIT---DKCVLDMRSMDFKSNSAVAWSNKS 185 (210)
T ss_dssp -----TT-EEEC---CCEEEEETTTTEEEEEEEEEECST
T ss_pred -----cc-eEcc---CchhcchhcccccccchhhccCCC
Confidence 00 0000 123455656666666677775544
No 462
>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C
Probab=99.48 E-value=4.4e-13 Score=101.31 Aligned_cols=135 Identities=13% Similarity=0.180 Sum_probs=80.9
Q ss_pred CcceeecCCCceEEEEEeeCCCC------CceeEEeECC--EeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEE
Q psy14540 113 SRSIKVHSGDRAGVQCLVTKGDP------PLTISWLKNG--LPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVAS 184 (291)
Q Consensus 113 ~~~~~~~~g~~~~l~C~~~~~~p------~~~~~W~~~~--~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~ 184 (291)
+..+.+.+|+.++|.|.+ .+.+ .+.+.|+++. ... . +.+... . .+
T Consensus 12 p~~v~v~~G~~v~L~C~~-~~~~~~~~~~~~~v~W~k~~~g~~~----~------------~l~~~~---~--~~----- 64 (264)
T 2gjj_A 12 PSSLPVSVGEKVTMTCKS-SQTLLYSNNQKNYLAWYQQKPGQSP----K------------LLISWA---F--TR----- 64 (264)
T ss_dssp CSEEEEETTCCEEEEEEE-SSCCEETTTTEECEEEEEECTTSCC----E------------EEEETT---T--EE-----
T ss_pred CCeEEecCCCcEEEEeEc-CCcccccccCCceEEEEEECCCCCc----E------------EEEEec---c--cC-----
Confidence 445778899999999998 5666 6789999852 111 0 000000 0 00
Q ss_pred ecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCcc-CCceeEEEEecCC------------------CCC-
Q psy14540 185 NTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVAS-DNHSSNLRVNVPP------------------HIG- 244 (291)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~-~~~~~~l~v~~~p------------------~~~- 244 (291)
..+ ....+.+........|.|.++..+|+|.|.|.+.+..+. ......|.|..+| .+.
T Consensus 65 -~~~-~~~R~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (264)
T 2gjj_A 65 -KSG-VPDRFTGSGSGTDFTLTIGSVKAEDLAVYYCQQYSNYPWTFGGGTRLEIKRGGGGSGGGGSGGGGSGGGGSEVQL 142 (264)
T ss_dssp -CTT-SCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEECC-------------------CCEE
T ss_pred -CCC-CCccEEEecCCCEEEEEECCCCHHHCEEEEEEEecCCccEecCCEEEEEEcCCcccccccccccccccccCcEEE
Confidence 000 011122222223457888888888888888888776431 2233456666543 221
Q ss_pred -CCCcccccCCceEEEEEEeecCCCC--ceEEEEEC
Q psy14540 245 -PFTFGELMEGVRTQVACVVQSGDLP--LSLQWYKN 277 (291)
Q Consensus 245 -~~~~~~~~~g~~v~l~C~~~~~~p~--~~v~W~~~ 277 (291)
..+...+.+|+.++|.|.+ .+.+. +.+.|+|+
T Consensus 143 ~~~~~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~r~ 177 (264)
T 2gjj_A 143 QQSGPEVVKTGASVKISCKA-SGYSFTGYFINWVKK 177 (264)
T ss_dssp EECCCEEECTTCCEEEEEEE-ESSCGGGSEEEEEEE
T ss_pred eCCCCEEEcCCCcEEEEEEE-eCCccCCeEEEEEEE
Confidence 1222238999999999999 66653 79999997
No 463
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=3.8e-13 Score=85.74 Aligned_cols=86 Identities=29% Similarity=0.505 Sum_probs=57.0
Q ss_pred cCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCC-CceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCC
Q psy14540 111 SNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSD-AEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVAS 189 (291)
Q Consensus 111 ~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 189 (291)
..+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+... .+.....
T Consensus 13 ~~p~~~~v~~G~~~~l~C~~-~g~p~p~v~W~~~~~~~~~~~~~~~~~~------------------------------- 60 (100)
T 2edj_A 13 QGPANQTLAVDGTALLKCKA-TGDPLPVISWLKEGFTFPGRDPRATIQE------------------------------- 60 (100)
T ss_dssp ECCCCEEEESSSEEEECCEE-ECSSCCEEEEEESSSEESSSCSSCEECT-------------------------------
T ss_pred eCcCCEEEcCCCcEEEEEEE-EEcCCCEEEEEECCEECCCCCCCEEEcC-------------------------------
Confidence 34455778899999999999 58999999999998877532 1221111
Q ss_pred CCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecC
Q psy14540 190 DNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVP 240 (291)
Q Consensus 190 ~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~ 240 (291)
...|.|.++..+|+|.|+|.|.|..|.....+.|.|..+
T Consensus 61 ------------~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~ 99 (100)
T 2edj_A 61 ------------QGTLQIKNLRISDTGTYTCVATSSSGETSWSAVLDVTES 99 (100)
T ss_dssp ------------TCCEEEESCCTTTCCEEEEEEECSSCCCBCCEEEEEESC
T ss_pred ------------CCEEEEccCCcccCEEEEEEEEcCCCCEEEEEEEEEecC
Confidence 124555666666666666666666666666666666544
No 464
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}
Probab=99.47 E-value=4.8e-13 Score=84.73 Aligned_cols=77 Identities=13% Similarity=0.241 Sum_probs=51.2
Q ss_pred CCcceeecCCCceEEEEEeeCCC-CCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCC
Q psy14540 112 NSRSIKVHSGDRAGVQCLVTKGD-PPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASD 190 (291)
Q Consensus 112 ~~~~~~~~~g~~~~l~C~~~~~~-p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~ 190 (291)
.+....+.+|+.+.|.|.+ .+. |.+.+.|++++..+....+..+... .....|.|.++...|.|.|+|.+.|..|..
T Consensus 7 ~~~~~~v~~G~~v~l~C~~-~g~~p~~~v~W~~~~~~~~~~~~~~~~~~-~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~ 84 (97)
T 2bk8_A 7 QIMHAVGEEGGHVKYVCKI-ENYDQSTQVTWYFGVRQLENSEKYEITYE-DGVAILYVKDITKLDDGTYRCKVVNDYGED 84 (97)
T ss_dssp CCCCEEECTTCCEEEEEEE-ESCCTTCEEEEEETTEECCSSSSEEEEEE-TTEEEEEECSCCGGGCEEEEEEEECSSCEE
T ss_pred cCcCEEEcCCCcEEEEEEE-eccCCCCEEEEEECCEECcCCCCEEEEEc-CCeEEEEEecCChhhCeEEEEEEECCCCeE
Confidence 3455788999999999999 575 8899999999998876655544321 123345555555555555555555544433
No 465
>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}
Probab=99.47 E-value=1.7e-13 Score=103.34 Aligned_cols=145 Identities=14% Similarity=0.154 Sum_probs=78.5
Q ss_pred CcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCC-C
Q psy14540 113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASD-N 191 (291)
Q Consensus 113 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~-~ 191 (291)
+..+.+.+|+.++|.|.+ .+.+.+.+.|++....- ..... +... .......+ ..+.. .
T Consensus 9 p~~~~v~~G~~v~L~C~~-~~~~~~~v~W~r~~~~~--~~~~~----------~~~~--~~~~~~~~------~~~~~~r 67 (259)
T 3omz_A 9 TKSVIRQTGSSAEITCDL-AEGSTGYIHWYLHQEGK--APQRL----------LYYD--SYTSSVVL------ESGISPG 67 (259)
T ss_dssp --CEEEETTCCEEEECCC------CEEEEEEECTTS--CCEEE----------EEEE--TTTCCEEE------CTTCCBT
T ss_pred CceeEecCCCcEEEEEEE-ccCCCcEEEEEEECCCC--CcEEE----------EEEe--cCcCcccc------CCCCCcc
Confidence 345788899999999998 67778899999832100 00000 0000 00000000 00000 0
Q ss_pred CceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCc---cCCceeEEEEecC-----------------CCCCCCCccc-
Q psy14540 192 HSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVA---SDNHSSNLRVNVP-----------------PHIGPFTFGE- 250 (291)
Q Consensus 192 ~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~---~~~~~~~l~v~~~-----------------p~~~~~~~~~- 250 (291)
............+|.|.++..+|+|.|.|.+.+..+ .......|.|..+ |.+...+...
T Consensus 68 ~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~ 147 (259)
T 3omz_A 68 KYDTYGSTRKNLRMILRNLIENDSGVYYCATWDQNYYKKLFGSGTSLVVTDKQGSADDAKKDAAKKDGAQKVTQAQSSVS 147 (259)
T ss_dssp TEEEECC--CCCEEEESSCCGGGCEEEEEEEECTTSSCEEECCCEEEEEEC------------------CEEECCCCCEE
T ss_pred eeEeecCCCCeEEEEECCCCcccCEEEEEEEeeCCccccEECCCCEEEEecCCCCccccccccccccCCeeeEEeCCEEE
Confidence 000001112345788888888999999998887654 3344455666552 2333333333
Q ss_pred ccCCceEEEEEEeecCCCCceEEEEECC
Q psy14540 251 LMEGVRTQVACVVQSGDLPLSLQWYKNG 278 (291)
Q Consensus 251 ~~~g~~v~l~C~~~~~~p~~~v~W~~~~ 278 (291)
+.+|+.++|.|.+....|.+.+.|+|++
T Consensus 148 v~~G~~v~L~C~~~~~~~~~~v~W~k~~ 175 (259)
T 3omz_A 148 MPVRKAVTLNCLYETSWWSYYIFWYKRL 175 (259)
T ss_dssp EETTCCEEECCEEECCCSSCEEEEEEEC
T ss_pred EcCCCCEEEEEECCCccCCceEEEeeeC
Confidence 8999999999998333478899999853
No 466
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}
Probab=99.47 E-value=2.9e-13 Score=86.80 Aligned_cols=74 Identities=24% Similarity=0.399 Sum_probs=48.1
Q ss_pred CcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCC
Q psy14540 113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVA 188 (291)
Q Consensus 113 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~ 188 (291)
+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+....+..+.... ....|.|.++..+|.|.|+|.+.|..|
T Consensus 15 ~~~~~v~~G~~v~l~C~~-~g~p~p~i~W~k~~~~~~~~~~~~~~~~~-~~~~L~i~~~~~~D~G~Y~C~a~N~~G 88 (103)
T 3qp3_A 15 MRSHRVPCGQNTRFILNV-QSKPTAEVKWYHNGVELQESSKIHYTNTS-GVLTLEILDCHTDDSGTYRAVCTNYKG 88 (103)
T ss_dssp CCCEEEETTCCEEEEEEE-EEESCCEEEEEETTEECCCCSSEEEEEET-TEEEEEECSCCGGGCEEEEEEEEETTE
T ss_pred CcceEEeCCCeEEEEEEE-EecCCCEEEEEECCEECCCCCCEEEEECC-CEEEEEEcCCCcccCEEEEEEEEeCCC
Confidence 455778899999999999 68899999999999988766554433221 123344444444444444444444433
No 467
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=3.6e-13 Score=88.64 Aligned_cols=89 Identities=24% Similarity=0.359 Sum_probs=67.6
Q ss_pred cCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCC-CceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCC
Q psy14540 111 SNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSD-AEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVAS 189 (291)
Q Consensus 111 ~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 189 (291)
..+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+... .+....
T Consensus 13 ~~p~~~~v~~G~~v~l~C~~-~g~p~p~i~W~k~g~~~~~~~~~~~~~-------------------------------- 59 (118)
T 2eo9_A 13 QGPVNQTVAVDGTFVLSCVA-TGSPVPTILWRKDGVLVSTQDSRIKQL-------------------------------- 59 (118)
T ss_dssp BCCCCEEEETTCEEEEECBC-CCSSCCEEEEEESSSBCCTTSTTEEEE--------------------------------
T ss_pred cCCCCEEEcCCCeEEEEEEE-EecCCCEEEEEECCEECcCCCCeEEEc--------------------------------
Confidence 34556788999999999999 78999999999998877432 111111
Q ss_pred CCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCCCC
Q psy14540 190 DNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHI 243 (291)
Q Consensus 190 ~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p~~ 243 (291)
....|.|.++..+|+|.|+|.|.|..|.....+.|.|..++..
T Consensus 60 -----------~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~p 102 (118)
T 2eo9_A 60 -----------ENGVLQIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQEFGVP 102 (118)
T ss_dssp -----------ETTEEEEESCCGGGCCCEEEEEECSSCEEEEECCEEEECCSCC
T ss_pred -----------cCCEEEEccCCcCCCEEEEEEEEcCCCcEEEEEEEEEEeCCCC
Confidence 0236888888888999999999998888777888888876543
No 468
>3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E
Probab=99.47 E-value=2.5e-13 Score=101.97 Aligned_cols=80 Identities=16% Similarity=0.279 Sum_probs=49.6
Q ss_pred ceEEEEeeeecCCCeeEEEEeeeCCcc-------------CCceeEEEEec----CCCCCCCC-cccccCCceEEEEEEe
Q psy14540 202 TSSLSIATLSTGHSGNYTCVASNTVAS-------------DNHSSNLRVNV----PPHIGPFT-FGELMEGVRTQVACVV 263 (291)
Q Consensus 202 ~~~l~i~~~~~~~~g~y~C~~~~~~~~-------------~~~~~~l~v~~----~p~~~~~~-~~~~~~g~~v~l~C~~ 263 (291)
...|.|.++..+|+|.|.|.+.+..+. ......|.|.. +|.+.... ...+.+|+.++|.|.+
T Consensus 78 ~~sL~I~~v~~~DsG~Y~C~~~~~~g~~~~~~~~~~~~~~~~~~t~L~V~~~~~~~P~v~~~~p~~~~~~g~~v~L~C~~ 157 (257)
T 3bn9_D 78 TLYLQMSSLRAEDTAVYYCARPYLTYPQRRGPQNVSPFDNWGQGTMVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLV 157 (257)
T ss_dssp EEEEEEESCCGGGCEEEEEEEECCSSTTSCCCCTTCCEEEECCCEEEEECSSCCBCCEECCCCC-----------CCCEE
T ss_pred EEEEEECCCChhhCEEEEEEEecCCCcccccccccceeeeeCCcEEEEecCCCCcCCcEEEecCcccccCCCcEEEEEEE
Confidence 467999999999999999999886531 11334677764 35444332 2236789999999999
Q ss_pred ecCCCCc-eEEEEECCEEc
Q psy14540 264 QSGDLPL-SLQWYKNGLAI 281 (291)
Q Consensus 264 ~~~~p~~-~v~W~~~~~~l 281 (291)
.+.+|.+ .|.|+++|..+
T Consensus 158 ~g~~P~pi~v~W~k~g~~~ 176 (257)
T 3bn9_D 158 KDYFPEPVTVSWNSGALTS 176 (257)
T ss_dssp EEEBSSCCEEEETTTTCCS
T ss_pred eeEECCCcEEEEeeCCCcC
Confidence 5445776 99999999764
No 469
>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody, immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2qej_A*
Probab=99.47 E-value=2.1e-14 Score=105.06 Aligned_cols=134 Identities=16% Similarity=0.269 Sum_probs=83.4
Q ss_pred CcceeecCCCceEEEEEeeCCCCC---ceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCC
Q psy14540 113 SRSIKVHSGDRAGVQCLVTKGDPP---LTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVAS 189 (291)
Q Consensus 113 ~~~~~~~~g~~~~l~C~~~~~~p~---~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 189 (291)
+....+.+|+.++|.|.+ .+.+. +.+.| ++..+... .. ........|.|.
T Consensus 11 P~~~~v~~G~~v~L~C~~-~g~~p~~~~~v~W--~~~~~~~~--~~-------------~~~~~~~~g~~~--------- 63 (214)
T 1ow0_A 11 PALEDLLLGSEANLTCTL-TGLRDASGVTFTW--TPSSGKSA--VQ-------------GPPERDLCGCYS--------- 63 (214)
T ss_dssp CCHHHHHHCSSCCCEEEE-TTCCSCCCCCCCB--SSCSSCCC--EE-------------CCCCCCSTTCCC---------
T ss_pred cChHHhccCCCcEEEEEE-eeeECCCCeEEEE--cCCCCCCc--cc-------------CCceECCCCcEE---------
Confidence 444567899999999999 45543 68999 44433211 00 000001122221
Q ss_pred CCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEE---EecCCCCCCCCcc--cccCCceEEEEEEee
Q psy14540 190 DNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLR---VNVPPHIGPFTFG--ELMEGVRTQVACVVQ 264 (291)
Q Consensus 190 ~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~---v~~~p~~~~~~~~--~~~~g~~v~l~C~~~ 264 (291)
....|.|..+..+|+|.|.|.+.|..+.......+. +..+|.+...+.. .+..|+.++|.|.+.
T Consensus 64 -----------~~~~L~I~~~~~~D~g~Y~C~~~~~~~~~~~~~~i~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~ 132 (214)
T 1ow0_A 64 -----------VSSVLPGCAEPWNHGKTFTCTAAYPESKTPLTATLSKSGNTFRPEVHLLPPPSEELALNELVTLTCLAR 132 (214)
T ss_dssp -----------EEEECTTTHHHHHHTCEEEEEECCSSCSSCEEEEEECCSSCCCCEEEEECCCTTTTTSSSEEEEEEEEE
T ss_pred -----------EEEEEEEeHHHcCCCCeEEEEEecCCCCCceeEeeccCCCCCCCEEEecCCCHHHhccCCceEEEEEEe
Confidence 124567777888899999999988765433333332 2345655443322 267899999999994
Q ss_pred cCCCC-ceEEEEECCEEccCC
Q psy14540 265 SGDLP-LSLQWYKNGLAISQP 284 (291)
Q Consensus 265 ~~~p~-~~v~W~~~~~~l~~~ 284 (291)
+.+|+ +.|.|+|||..|...
T Consensus 133 g~~P~~~~v~W~k~g~~l~~~ 153 (214)
T 1ow0_A 133 GFSPKDVLVRWLQGSQELPRE 153 (214)
T ss_dssp EESSSCCEEEEEETTEECCGG
T ss_pred eeECCCcEEEEEECCEECCCC
Confidence 44564 599999999988654
No 470
>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H
Probab=99.47 E-value=4.4e-13 Score=99.27 Aligned_cols=146 Identities=18% Similarity=0.252 Sum_probs=81.1
Q ss_pred ceeecCCCceEEEEEeeCCCC--CceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCC
Q psy14540 115 SIKVHSGDRAGVQCLVTKGDP--PLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNH 192 (291)
Q Consensus 115 ~~~~~~g~~~~l~C~~~~~~p--~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~ 192 (291)
...+.+|+.++|.|.+. +.+ .+.+.||+....- ..... +.+. . .....| . .....
T Consensus 9 ~~~v~~G~~v~L~C~~~-~~~~~~~~v~W~r~~~~~--~~~~l----------~~~~--~-~~~~~~------~-~~~~~ 65 (232)
T 1dn0_B 9 AGLLKPSETLSLTCAVY-GGSFSDYYWSWIRQPPGK--GLEWI----------GEIN--H-SGSTNY------N-PSLKS 65 (232)
T ss_dssp CCEECTTSCEEEEEEEE-SSCCSSCCEEEEEECTTS--CCEEE----------EEEC--T-TCCEEE------C-TTTTT
T ss_pred CEEEeCCCcEEEEEEEc-cccCCCceEEEEEeCCCC--CeEEE----------EEEe--c-CCceee------C-CccCC
Confidence 36788999999999984 443 5789999853110 00000 0000 0 000000 0 00011
Q ss_pred ceEEEE--eccceEEEEeeeecCCCeeEEEEeeeCC--c----cCCceeEEEEec----CCCCCCCC-cccccCC-ceEE
Q psy14540 193 SSNLRV--NEYTSSLSIATLSTGHSGNYTCVASNTV--A----SDNHSSNLRVNV----PPHIGPFT-FGELMEG-VRTQ 258 (291)
Q Consensus 193 ~~~~~~--~~~~~~l~i~~~~~~~~g~y~C~~~~~~--~----~~~~~~~l~v~~----~p~~~~~~-~~~~~~g-~~v~ 258 (291)
.+.+.. ......|.|.++..+|+|.|.|.+.+.. + .......|.|.. +|.+.... ...+..| +.++
T Consensus 66 R~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p~~~~~~g~~~v~ 145 (232)
T 1dn0_B 66 RVTISVDTSKNQFSLKLSSVTAADTAVYYCARPPHDTSGHYWNYWGQGTLVTVSSGSASAPTLFPLVSCENSPSDTSSVA 145 (232)
T ss_dssp TEEEEEETTTTEEEEEECSCCGGGCEEEEEEECSSTTSCSCCSEECCCEEEEECSSCCBCCEEEEEECC------CCSEE
T ss_pred eEEEEEeCCCCEEEEEECCCCcccCEEEEEEEecCCcCCchhhhcccceEEEEccCCCCCCceEEeccccccCCCCCcEE
Confidence 112211 1224589999999999999999998421 1 122345677765 23333211 2224578 9999
Q ss_pred EEEEeecCCCCc-eEEEEE-CCEEccC
Q psy14540 259 VACVVQSGDLPL-SLQWYK-NGLAISQ 283 (291)
Q Consensus 259 l~C~~~~~~p~~-~v~W~~-~~~~l~~ 283 (291)
|.|.+.+.+|.+ .|.|++ ||..+..
T Consensus 146 L~C~~~g~~P~p~~v~W~~~~g~~l~~ 172 (232)
T 1dn0_B 146 VGCLAQDFLPDSITFSWKYKNNSDISS 172 (232)
T ss_dssp EEEEEEEEBSSCCEEEEEETTSCEECC
T ss_pred EEEEEEEEeCCCeEEEEEcCCCCceee
Confidence 999995455776 999999 9988754
No 471
>4hwu_A Fibroblast growth factor receptor 2; FGFR2, KGFR, CD332, IG-C2 type 1 domain, IG superfamily, IMM system, structural genomics, PSI-biology; 2.90A {Mus musculus}
Probab=99.46 E-value=3.3e-13 Score=85.10 Aligned_cols=84 Identities=32% Similarity=0.487 Sum_probs=65.4
Q ss_pred eeecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCC-CeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCC
Q psy14540 6 IYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAG-DRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNR 84 (291)
Q Consensus 6 ~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~ 84 (291)
+..|....+.+|+++.|.|.+.+ .+.+.|+++|..+.. .++... . ..|.|.+++.+|+|.|+|.+.+.
T Consensus 5 ~~~p~~~~v~~G~~~~l~C~~~~--~p~v~W~k~g~~~~~~~~~~~~------~---~~L~i~~~~~~D~G~Y~C~a~n~ 73 (95)
T 4hwu_A 5 GSQPEAYVVAPGESLELQCMLKD--AAVISWTKDGVHLGPNNRTVLI------G---EYLQIKGATPRDSGLYACTAART 73 (95)
T ss_dssp ---CEEEEECTTSCEEEECCCCT--TCEEEEEETTEEECCCSSEEEE------T---TEEEECSCCGGGCEEEEEEEECS
T ss_pred ccCCCcEEECCCCEEEEEEEeCC--CCEEEEEECCEECCCCceEEEe------C---CEEEECcCCcccCEEEEEEEccC
Confidence 44677788999999999999886 579999999988863 222221 1 35999999999999999999998
Q ss_pred CCceeeeeeEEEEcCC
Q psy14540 85 VGSQTHSADMRVYDAP 100 (291)
Q Consensus 85 ~~~~~~~~~l~v~~~~ 100 (291)
.|.....+.+.|..++
T Consensus 74 ~g~~~~~~~l~V~~~~ 89 (95)
T 4hwu_A 74 VDSETWIFMVNVTDAA 89 (95)
T ss_dssp SCEEEEEEEEEECCC-
T ss_pred CCcEEEEEEEEEeCCc
Confidence 8888888888887543
No 472
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}
Probab=99.45 E-value=1.3e-12 Score=95.57 Aligned_cols=126 Identities=23% Similarity=0.298 Sum_probs=88.9
Q ss_pred CcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCC--ceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCC
Q psy14540 113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDA--EITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASD 190 (291)
Q Consensus 113 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~ 190 (291)
+....+.+|+.+.|.|.+ .+.|.+.+.|+++|..+.... +..+.
T Consensus 25 p~~~~~~~G~~v~l~C~~-~g~p~p~i~W~~~g~~l~~~~~~~~~~~--------------------------------- 70 (215)
T 3mtr_A 25 PVAVYTWEGNQVNITCEV-FAYPSATISWFRDGQLLPSSNYSNIKIY--------------------------------- 70 (215)
T ss_dssp CSEEEECTTCCEEEEEEE-EEESCCEEEEEETTEESSCSSSCSEEEE---------------------------------
T ss_pred CceEEEECCCCEEEEEEE-eecCCCEEEEEECCeECCCCCCccEEEe---------------------------------
Confidence 344778899999999999 688999999999998876542 11111
Q ss_pred CCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCCCCCCCCcccccCCceEEEEEEee---cCC
Q psy14540 191 NHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGPFTFGELMEGVRTQVACVVQ---SGD 267 (291)
Q Consensus 191 ~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~g~~v~l~C~~~---~~~ 267 (291)
.......|.|.++...|+|.|+|.|.|..|.....+.|.|..+|........ ...+..+.|.|... .+.
T Consensus 71 -------~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~P~~p~~~~~-~~~~~~~~l~w~~p~~~~~~ 142 (215)
T 3mtr_A 71 -------NTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQADTPSSPSIDQV-EPYSSTAQVQFDEPEATGGV 142 (215)
T ss_dssp -------EETTEEEEEECCCSGGGCEEEEEEEECSSCEEEEEEEEEECCCCCCCEEEEE-EEETTEEEEEEECCSCCCSS
T ss_pred -------cCCCeeEEEEecCChhhCeEEEEEEEECCCceEEEEEEEECCCCCCCcceEE-EEecceEEEEEecCCccCCC
Confidence 0112456888888888999999999998888888888888776654322211 34567889999741 233
Q ss_pred CCc--eEEEEECCEE
Q psy14540 268 LPL--SLQWYKNGLA 280 (291)
Q Consensus 268 p~~--~v~W~~~~~~ 280 (291)
|.. .+.|.+++..
T Consensus 143 pi~~y~v~~~~~~~~ 157 (215)
T 3mtr_A 143 PILKYKAEWRAVGEE 157 (215)
T ss_dssp CEEEEEEEEEETTCC
T ss_pred ceEEEEEEEEECCCC
Confidence 433 5889988753
No 473
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}
Probab=99.45 E-value=6e-13 Score=84.64 Aligned_cols=76 Identities=26% Similarity=0.358 Sum_probs=51.1
Q ss_pred CCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCC
Q psy14540 112 NSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVAS 189 (291)
Q Consensus 112 ~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 189 (291)
.+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+....+....... ....|.|..+..+|.|.|+|.+.|..|.
T Consensus 12 ~~~~~~v~~G~~~~l~C~~-~g~p~p~v~W~~~g~~~~~~~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~a~n~~g~ 87 (99)
T 3puc_A 12 GLQDTTVSSDSVAKFAVKA-TGEPRPTAIWTKDGKAITQGGKYKLSEDK-GGFFLEIHKTDTSDSGLYTCTVKNSAGS 87 (99)
T ss_dssp CCCCEEEESSSCEEEEEEE-EEESCCEEEEEETTEECCSSSSEEEEEET-TEEEEEECSCCGGGCEEEEEEEEETTEE
T ss_pred cCccEEEeCCCcEEEEEEE-EecCCCEEEEEECCEECcCCCCEEEEEeC-CEEEEEECCCCcccCEEEEEEEEeCCCc
Confidence 3445788899999999999 68888999999999988766555443222 2334555555555555555555554443
No 474
>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49}
Probab=99.45 E-value=1.6e-12 Score=94.70 Aligned_cols=121 Identities=18% Similarity=0.277 Sum_probs=75.0
Q ss_pred cceeecCCCceEEEEEeeCCCC---CceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCC
Q psy14540 114 RSIKVHSGDRAGVQCLVTKGDP---PLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASD 190 (291)
Q Consensus 114 ~~~~~~~g~~~~l~C~~~~~~p---~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~ 190 (291)
....+..|+.++|+|.+..+.| ...+.|+|+|.++... ...|.+..+...++|.|+|.+.+..+..
T Consensus 10 ~~~~i~~GdsVTLTatVaGGkP~pspyTYqWyKDG~~IsGa-----------T~tLti~s~t~sdSG~YqCvVTDa~Gcs 78 (304)
T 3shs_A 10 NKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENN-----------TATLTVADATSENAGSYKVTVQDTDTMT 78 (304)
T ss_dssp SCSSBCTTCCEEEEEEEEESSSCCCCEEEEEEETTEECSCC-----------SSEEEESSCCGGGCEEEEEEEEETTTCC
T ss_pred CCccccCCCCEEEEEEecCCCCCCCCceEEEEECCccccCC-----------cceEEeeeccccCCeEEEEEEEECCCCe
Confidence 3356778999999999977878 5689999999876432 2245555666666666666665544322
Q ss_pred CCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCCC--CCC--CCcccccCCceEEEEEEe--e
Q psy14540 191 NHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPH--IGP--FTFGELMEGVRTQVACVV--Q 264 (291)
Q Consensus 191 ~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p~--~~~--~~~~~~~~g~~v~l~C~~--~ 264 (291)
. .+-.+.|..++. +.. +....+..|..+.|.+.+ .
T Consensus 79 ~---------------------------------------tSs~VtVT~~a~l~i~it~P~s~~vssg~sVtL~aTVt~S 119 (304)
T 3shs_A 79 S---------------------------------------VESEVFLMEEAELIVNITEPQHFYVSSQTDVELHATVKFS 119 (304)
T ss_dssp E---------------------------------------EECCCEEECBCCEEEEESSCSEEEECSSCCEEEEEEEEET
T ss_pred e---------------------------------------eeeeEEEeccCceeEEecCCCceeccCCCeEEEEEEEecc
Confidence 1 111112221111 101 111114567788888877 5
Q ss_pred cCCC-----CceEEEEECCEEccCC
Q psy14540 265 SGDL-----PLSLQWYKNGLAISQP 284 (291)
Q Consensus 265 ~~~p-----~~~v~W~~~~~~l~~~ 284 (291)
+|.| ..+++|++||..++..
T Consensus 120 GGtppA~~~~yTYQWyKngt~IsgA 144 (304)
T 3shs_A 120 GGKTPADNYELHYSWSKGEDVIDTT 144 (304)
T ss_dssp TSCCSSTTCCCEEEEEETTEEEESS
T ss_pred CCCCcccCCCceeEEeeCCeEccCc
Confidence 6666 4799999999988644
No 475
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A
Probab=99.45 E-value=1.7e-13 Score=88.19 Aligned_cols=78 Identities=27% Similarity=0.589 Sum_probs=51.3
Q ss_pred cCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCC
Q psy14540 111 SNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASD 190 (291)
Q Consensus 111 ~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~ 190 (291)
..+....+.+|+.+.|.|.+ .|.|.+.+.|++++..+....+..+.... ....|.|.++...|.|.|+|.+.|..|..
T Consensus 19 ~~p~~~~v~~G~~v~L~C~~-~g~p~p~v~W~k~g~~l~~~~~~~~~~~~-~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~ 96 (106)
T 1nct_A 19 TKPRSMTVYEGESARFSCDT-DGEPVPTVTWLRKGQVLSTSARHQVTTTK-YKSTFEISSVQASDEGNYSVVVENSEGKQ 96 (106)
T ss_dssp ECCCCEEESSSSCEECCEEE-ECSSCCBCCBCSSSSCCTTCSSEEEEECS-SEEEEEECCCCSSCCSEEEECCBCSSCBC
T ss_pred ECCCCEEEeCCCcEEEEEEE-EEcCCCEEEEEECCEECCCCCCEEEEECC-CEEEEEECcCCchhCEEEEEEEEeCCCeE
Confidence 34456788999999999999 68899999999999888765555443321 23345555555555444444444444443
No 476
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A
Probab=99.45 E-value=2.8e-13 Score=85.06 Aligned_cols=72 Identities=22% Similarity=0.367 Sum_probs=46.7
Q ss_pred CcceeecCCCceEEEEEeeCCCCCceeEEeECC--EeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCC
Q psy14540 113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNG--LPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVA 188 (291)
Q Consensus 113 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~--~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~ 188 (291)
+....+.+|+.+.|.|.+ .|.|.|.+.|++++ ..+......... .....|.|..+..+|+|.|+|.|.|..|
T Consensus 9 ~~~~~v~~G~~~~l~C~~-~g~P~p~i~W~k~~~~~~~~~~~~~~~~---~~~~~L~i~~~~~~D~G~Y~C~a~N~~G 82 (93)
T 1wit_A 9 SRKIKIKAGFTHNLEVDF-IGAPDPTATWTVGDSGAALAPELLVDAK---SSTTSIFFPSAKRADSGNYKLKVKNELG 82 (93)
T ss_dssp CCEEEECTTBCCEEEEEE-ECCSSCEEEEECSTTTCBCSTTSEEEEE---TTEEEEECTTBCGGGCEEEEEEEEETTE
T ss_pred CCceEEeCCCEEEEEEEE-EEcCCCEEEEEECCCCcccCCcEEEEec---CCEEEEEECCCChhcCEEEEEEEEcCCC
Confidence 456788999999999999 69999999999999 776543222111 1234455555555555555555554444
No 477
>3mbe_C I-AG7; T cell receptor, histocompatability antigen, MHC class II, I immune system; HET: NAG; 2.89A {Mus musculus}
Probab=99.45 E-value=3.5e-12 Score=92.77 Aligned_cols=140 Identities=17% Similarity=0.219 Sum_probs=90.0
Q ss_pred cceeecceeeeecCCcEEEEEEecCCCCCeeEEEEC--CeecC-----CC-eeEeceEEee--ccceEEEEEEeecCCCC
Q psy14540 4 QLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLD--GYPLA-----GD-RFVMGQYMSL--HGDVISHVNISSVRVED 73 (291)
Q Consensus 4 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~--~~~~~-----~~-~~~~~~~~~~--~~~~~~~l~i~~~~~~d 73 (291)
.+.+.|..+.+.+|++++|.|.+.+. ...+.|++. ++... .. .....+.... .....++|+|.+++.+|
T Consensus 3 ~V~Q~p~~v~v~~G~sVtL~C~~s~~-~~~v~Wyrq~pg~~~~~l~~~~~~~~~~~Rfs~~~~~~~~~~sLtI~~lq~~D 81 (229)
T 3mbe_C 3 PVEQNPPALSLYEGADSGLRCNFSTT-MKSVQWFQQNHRGRLITLFYLAQGTKENGRLKSTFNSKERYSTLHIKDAQLED 81 (229)
T ss_dssp CEEEECSEEEEETTCCEEEEEEESSC-CSCEEEEEECSSSCBCCCEEESSEEEEETTEEEEEETTTTEEEEEECSCCSTT
T ss_pred cEEEcCCEEEEEcCCCEEEEEEEeCC-CcEEEEEEECCCCCcEEEEEeCCCCccCCCEEEEECCCCCEEEEEEECCcccC
Confidence 35677888899999999999999876 568999983 32221 00 0011111111 34456889999999999
Q ss_pred CeEEEEEEeCCC--C--ceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEecc
Q psy14540 74 SGIYQCTATNRV--G--SQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPIL 149 (291)
Q Consensus 74 ~G~y~C~~~~~~--~--~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~ 149 (291)
+|.|.|.+.... . .....+.|.|......+.+...... .....++|.|.+...+|...+.|++++..+.
T Consensus 82 SG~Y~Ca~~~~~~~~~~~fG~GT~L~V~~~~~~p~P~Vf~~~-------~~~~~vtl~Cl~~gf~P~i~v~~~~~~~~~~ 154 (229)
T 3mbe_C 82 SGTYFCAAEDGGSGNKLIFGTGTLLSVKPNIQNPEPAVYQLK-------DPRSQDSTLCLFTDFDSQINVPKTMESGTFI 154 (229)
T ss_dssp CBEEEEEEECSSSTTCEEECCCCEEEEECCCSSCCCEEEEEE-------CTTCTTCEEEEEESCCSSSCCCCCCSSSEEE
T ss_pred CCCEEEEEEeCCCcccceeCCCEEEEEecccCCCCCEEEEcc-------CCCCCEEEEEEccccCCceEeEeeccCceEe
Confidence 999999987432 1 1233456777654211211111111 1123489999998888888999999987765
Q ss_pred CC
Q psy14540 150 SD 151 (291)
Q Consensus 150 ~~ 151 (291)
..
T Consensus 155 ~~ 156 (229)
T 3mbe_C 155 TD 156 (229)
T ss_dssp CC
T ss_pred cC
Confidence 43
No 478
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Probab=99.45 E-value=4.9e-13 Score=92.35 Aligned_cols=96 Identities=24% Similarity=0.377 Sum_probs=65.9
Q ss_pred CcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCC
Q psy14540 113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNH 192 (291)
Q Consensus 113 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~ 192 (291)
+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+....++.+.....+
T Consensus 48 ~~~~~v~~G~~v~L~C~~-~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~------------------------------ 96 (154)
T 1fhg_A 48 ILDMEVVEGSAARFDCKV-EGYPDPEVMWFKDDNPVKESRHFQIDYDEEG------------------------------ 96 (154)
T ss_dssp CCCEEEETTSCEEEEEEE-EEESCCEEEEEETTEECCCSSSEEEEECTTC------------------------------
T ss_pred CCcEEEeCCCeEEEEEEE-EEecCCEEEEEECCEECCCCCcEEEEECCCC------------------------------
Confidence 345778899999999999 6889999999999998876555443322211
Q ss_pred ceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCCCCCCCCc
Q psy14540 193 SSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGPFTF 248 (291)
Q Consensus 193 ~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p~~~~~~~ 248 (291)
...|.|.++...|+|.|+|.|.|..|.....+.|.|..+|.+...+.
T Consensus 97 ---------~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~p~~~~~~~ 143 (154)
T 1fhg_A 97 ---------NCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLVETMGKEGEGEG 143 (154)
T ss_dssp ---------EEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECC--------
T ss_pred ---------eEEEEECCCChhcCEEEEEEEEECCCeEEEEEEEEEeCcCcCCCCCC
Confidence 23566677777777778888888777777788888887776655443
No 479
>2bnu_A TCR alpha chain, T-cell receptor alpha chain C region; superagonist peptide T-cell vaccines, transmembrane, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2bnq_D 2bnr_D 2f54_D 2pyf_A* 2pye_D* 2f53_D 2p5e_D* 2p5w_D* 3mv7_D 3mv8_D 3mv9_D 3utt_D 2cdg_A
Probab=99.45 E-value=2.8e-13 Score=97.94 Aligned_cols=128 Identities=16% Similarity=0.168 Sum_probs=79.2
Q ss_pred ceeecceeeeecCCcEEEEEEecCCCCCeeEEEECC--ee---c-C--CC--eeEeceEEe--eccceEEEEEEeecCCC
Q psy14540 5 LIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDG--YP---L-A--GD--RFVMGQYMS--LHGDVISHVNISSVRVE 72 (291)
Q Consensus 5 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~--~~---~-~--~~--~~~~~~~~~--~~~~~~~~l~i~~~~~~ 72 (291)
+...|..+.+.+|++++|.|.+.+.....+.|++.. .. + . .. .....+... ......++|+|.+++.+
T Consensus 3 v~q~p~~v~v~~G~~v~L~C~~s~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~ 82 (203)
T 2bnu_A 3 VTQIPAALSVPEGENLVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSSGRSTLYIAASQPG 82 (203)
T ss_dssp EEEECSEEEEETTCCEEEEEEESCCCEEEEEEEEECTTSCEEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESSCCGG
T ss_pred cEEcCCEEEEeCCCCEEEEEEECCCCcceEEEEEeCCCCCcEEEEEECCCCccccCCCeEEEEcCCCCEEEEEEeeCCcc
Confidence 456688889999999999999976544579999842 21 1 1 10 001111111 12345678999999999
Q ss_pred CCeEEEEEEeCCC---C--ceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCcee
Q psy14540 73 DSGIYQCTATNRV---G--SQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTI 139 (291)
Q Consensus 73 d~G~y~C~~~~~~---~--~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~ 139 (291)
|+|.|.|.+.+.. . .....+.|.|......+.+.+..... ....++|.|.+...+|.+.+
T Consensus 83 Dsg~Y~C~~~~~~~~~~~~~~g~gt~L~V~~~~~~~~P~V~~~~~-------~~~~~~L~C~~~g~~P~p~v 147 (203)
T 2bnu_A 83 DSATYLCAVRPTSGGSYIPTFGRGTSLIVHPYIQNPDPAVYQLRR-------SKSSDKSVCLFTDFDSQTNV 147 (203)
T ss_dssp GCEEEEEEEEECSSSTTCCEECCCEEEEEECCCSSCCCEEEEECC-------SSSSSCEEEEEESCCTTCCC
T ss_pred cCeEEEEEEEcCcCcceeeeeCCCEEEEEeCCCCCCCCeEEecCC-------CCCCcEEEEEccccccCccc
Confidence 9999999997531 1 11234577776543211111111111 12378999999666898877
No 480
>3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H
Probab=99.44 E-value=7.4e-13 Score=99.46 Aligned_cols=145 Identities=16% Similarity=0.228 Sum_probs=82.0
Q ss_pred ceeecCCCceEEEEEeeCC-CCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCc
Q psy14540 115 SIKVHSGDRAGVQCLVTKG-DPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHS 193 (291)
Q Consensus 115 ~~~~~~g~~~~l~C~~~~~-~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~ 193 (291)
.+.+.+|+.++|.|.+... .+...+.|++.... ... .+.+.......... ........
T Consensus 9 ~v~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~----~~~----------~~~~~~~~~~~~~~-------~~~~~~~R 67 (253)
T 3liz_H 9 GGLVQPGGSLKLSCAASGFTFSSFAMSWGRQTPD----KRL----------ELVATINSNGASTY-------YPDTVKGR 67 (253)
T ss_dssp CCEECTTCCEEEEEEEESSCGGGSCEEEEEECTT----SCE----------EEEEEECTTSSCEE-------CCTTTTTT
T ss_pred CEEECCCCcEEEEEEeeCccccCceEEEEEECCC----CCc----------EEEEEEecCCCccc-------cCcccCCc
Confidence 4678899999999998431 23568999984311 000 01100000000000 00001111
Q ss_pred eEEEE--eccceEEEEeeeecCCCeeEEEEeeeCC----ccCCceeEEEEe----cCCCCCCCCc-ccccCCceEEEEEE
Q psy14540 194 SNLRV--NEYTSSLSIATLSTGHSGNYTCVASNTV----ASDNHSSNLRVN----VPPHIGPFTF-GELMEGVRTQVACV 262 (291)
Q Consensus 194 ~~~~~--~~~~~~l~i~~~~~~~~g~y~C~~~~~~----~~~~~~~~l~v~----~~p~~~~~~~-~~~~~g~~v~l~C~ 262 (291)
+.+.. ......|.|.+++.+|+|.|.|.+.+.. ........|.|. .+|.+..... ..+..|+.++|.|.
T Consensus 68 ~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~ 147 (253)
T 3liz_H 68 FTISRDNAKNTLFLQMSSLKSEDTAMYYCTRDPAGRAWFAYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCL 147 (253)
T ss_dssp CEEEEEGGGTEEEEEECSCCGGGCEEEEEEECCBTTTBCCEECCCEEEEECSSCCBCCEEEEECC------CCEEEEEEE
T ss_pred EEEEEeCCCCEEEEEECCCChhhCEEEEEEEecCCcceeeEECCCEEEEEeccCCCCCeEEEecCCcccCCCCcEEEEEE
Confidence 22221 1235679999999999999999998762 222344566775 3454442222 23668999999999
Q ss_pred eecCCCCc-eEEEEECCEE
Q psy14540 263 VQSGDLPL-SLQWYKNGLA 280 (291)
Q Consensus 263 ~~~~~p~~-~v~W~~~~~~ 280 (291)
+.+++|.+ .+.|+++|..
T Consensus 148 ~~g~~P~~~~v~W~~~~~~ 166 (253)
T 3liz_H 148 VKGYFPEPVTVTWNSGSLS 166 (253)
T ss_dssp EEEEBSSCCEEEEGGGTBC
T ss_pred EeeEeCCCeEEEEEeCCee
Confidence 95447766 9999999873
No 481
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.44 E-value=1.8e-13 Score=108.12 Aligned_cols=109 Identities=17% Similarity=0.221 Sum_probs=65.9
Q ss_pred ecceeeeecCCcEEEEEEecCCCCCeeEEEECCeecCCCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCc
Q psy14540 8 KFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGS 87 (291)
Q Consensus 8 ~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~ 87 (291)
.+....+.+|+++.|.|.+.+ |.+.+.|++++..+............. . .+|.|.+++.+|+|.|+|.+.+..|.
T Consensus 252 ~~~~v~v~~G~~~~l~C~~~g-p~p~i~W~~~~~~~~~~~~~~~r~~~~--~--~~L~I~~v~~~D~G~Y~C~a~N~~g~ 326 (361)
T 2xot_A 252 KESAWEAHLGDTLTIRCDTKQ-QGMTKVWVSPSNEQVLSQGSNGSVSVR--N--GDLFFKKVQVEDGGVYTCYAMGETFN 326 (361)
T ss_dssp CCCCCEEETTCCEEECCCCSS-TTCEEEEECTTSCBCCSCCSSSSEEEE--T--TEEEESSCCTTSCEEEEEEEECSSCE
T ss_pred cccCceecCCCeEEEEeEeeC-CCCeEEEEeCCCeeEeecccCCceEee--c--CeEEEeecCcccCEEEEEEEecCCCc
Confidence 345678999999999999998 889999999766543211100011111 1 24999999999999999999999888
Q ss_pred eeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeE
Q psy14540 88 QTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTIS 140 (291)
Q Consensus 88 ~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~ 140 (291)
....+.+.|...+ .+|+.++|.|.+ .|.|.|.+.
T Consensus 327 ~~~~~~l~V~~~~------------------~~g~~~~l~C~~-~g~P~P~i~ 360 (361)
T 2xot_A 327 ETLSVELKVYNFT------------------LHGHHDTLNAAA-DPWSHPQFE 360 (361)
T ss_dssp EEEEEEEEEESSC------------------CC--------------------
T ss_pred cEEEEEEEEEeee------------------ccCCceEEEEEe-CCCCCCccc
Confidence 8888888885421 467889999999 788988763
No 482
>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B
Probab=99.44 E-value=6.8e-13 Score=97.58 Aligned_cols=79 Identities=22% Similarity=0.321 Sum_probs=55.9
Q ss_pred ceEEEEeeeecCCCeeEEEEeeeCC--ccCCceeEEEEec----CCCCC-CCCcccccCCceEEEEEEeecCCCC--ceE
Q psy14540 202 TSSLSIATLSTGHSGNYTCVASNTV--ASDNHSSNLRVNV----PPHIG-PFTFGELMEGVRTQVACVVQSGDLP--LSL 272 (291)
Q Consensus 202 ~~~l~i~~~~~~~~g~y~C~~~~~~--~~~~~~~~l~v~~----~p~~~-~~~~~~~~~g~~v~l~C~~~~~~p~--~~v 272 (291)
..+|.|.++..+|+|.|.|.+.+.. ........|.|.. +|.+. ..+... .+|+.++|.|.+.++.|. +.+
T Consensus 80 ~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~-~~g~~v~L~C~~~~~~P~~~~~v 158 (221)
T 3m8o_H 80 TAFLQMNSLKSDDTAMYYCVIRGDVYNRQWGQGTLVTVSSASPTSPKVFPLSLCST-QPDGNVVIACLVQGFFPQEPLSV 158 (221)
T ss_dssp EEEEEECSCCGGGCEEEEEEEESCTTCCCBBCCEEEEECSCCCBCCEEEEEECCSC-CCTTEEEEEEEEEEEBSSCSEEE
T ss_pred EEEEEECCCCHHHCEEEEEEEECCChhheECCCEEEEEecCCCCCCeEEEecCccc-ccCCCEEEEEEEEeeECCCCEEE
Confidence 5579999999999999999998763 2233445666652 23332 112222 689999999999444775 599
Q ss_pred EEEECCEEc
Q psy14540 273 QWYKNGLAI 281 (291)
Q Consensus 273 ~W~~~~~~l 281 (291)
.|+++|..+
T Consensus 159 ~W~~~g~~~ 167 (221)
T 3m8o_H 159 TWSESGQGV 167 (221)
T ss_dssp EESCCSTTC
T ss_pred EEEECCEEC
Confidence 999999876
No 483
>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X
Probab=99.44 E-value=5.5e-13 Score=87.23 Aligned_cols=89 Identities=19% Similarity=0.211 Sum_probs=61.7
Q ss_pred CCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEEe
Q psy14540 120 SGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVN 199 (291)
Q Consensus 120 ~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~ 199 (291)
.+..+.|.|.+ .|.|.|.++|++||.++....+........ ..+...
T Consensus 14 ~~~~~~l~c~v-~G~P~P~I~W~knG~~l~~~~~~~~~~~~~-----------~~~~~~--------------------- 60 (126)
T 1he7_A 14 EMHHWCIPFSV-DGQPAPSLRWLFNGSVLNETSFIFTEFLEP-----------AANETV--------------------- 60 (126)
T ss_dssp CCCEEEEEEEE-CCSSCCEEEEEETTEECCCCSSEEEEEECC-----------CSSCCC---------------------
T ss_pred cCccEEEEEEE-eeeCCCeEEEEECCEECCCCCceeEEEeec-----------cccccc---------------------
Confidence 67789999999 899999999999999997765543221100 000000
Q ss_pred ccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCCC
Q psy14540 200 EYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPH 242 (291)
Q Consensus 200 ~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p~ 242 (291)
....|.|..+...|+|.|+|.|.|..|....++.|.|...|.
T Consensus 61 -~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~t~~l~v~~~P~ 102 (126)
T 1he7_A 61 -RHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNPF 102 (126)
T ss_dssp -EEEEEEEESCCGGGCEEEEEEEEETTEEEEEEEEECCCSCTT
T ss_pred -cceEEEECcCCCCCCEEEEEEEEECCCeEEEEEEEEEEcCCC
Confidence 123566777777778888888888888888888888876654
No 484
>1gxe_A Myosin binding protein C, cardiac-type; cytoskeleton, muscle, IGI, thick filament, immunoglobulin domain; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=99.44 E-value=1.9e-13 Score=91.98 Aligned_cols=32 Identities=28% Similarity=0.532 Sum_probs=29.3
Q ss_pred CcceeecCCCceEEEEEeeCCCCCceeEEeECC
Q psy14540 113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNG 145 (291)
Q Consensus 113 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~ 145 (291)
+..+.+.+|+.+.|.|.+ .|.|.|.+.|++++
T Consensus 25 p~~~~v~~G~~v~L~C~~-~G~P~P~i~W~k~g 56 (139)
T 1gxe_A 25 PDTIVVVAGNKLRLDVPI-SGDPAPTVIWQKAI 56 (139)
T ss_dssp CCEEEESSSSCCCCEEEC-CSBSCCEEEEEEEC
T ss_pred CCCEEEeCCCeEEEEEEE-EEcCCCeEEEEECC
Confidence 566889999999999999 79999999999988
No 485
>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=7.3e-13 Score=84.73 Aligned_cols=81 Identities=17% Similarity=0.328 Sum_probs=62.2
Q ss_pred ceeeeecCCcEEEEEEecCCCCCeeEEEECCeecC-CCeeEeceEEeeccceEEEEEEeecCCCCCeEEEEEEeCCCCce
Q psy14540 10 IQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLA-GDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQ 88 (291)
Q Consensus 10 ~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~y~C~~~~~~~~~ 88 (291)
....+.+|++++|.|.+. .|.+.+.|+|++..+. ..++.. ........|.|.+++.+|+|.|+|.+. ..
T Consensus 19 ~~~~v~~G~~v~L~C~~~-~p~~~v~W~k~g~~~~~~~~~~~-----~~~~~~~~L~I~~~~~~D~G~Y~C~a~----~~ 88 (102)
T 2eo1_A 19 REVQAEAGASATLSCEVA-QAQTEVTWYKDGKKLSSSSKVRV-----EAVGCTRRLVVQQAGQAEAGEYSCEAG----GQ 88 (102)
T ss_dssp EEEEEETTCCEEECCBCS-CSSSCCEEEETTEECCCCSSEEE-----EEETTEEEEEETTCCTTTCSCEEEEET----TE
T ss_pred ccEEEeCCCcEEEEEEec-CCCCceEEEECCEECCCCCCEEE-----EEcCCEEEEEECCCCcccCEEEEEEcC----CC
Confidence 445799999999999998 7888999999999887 333332 123344679999999999999999985 34
Q ss_pred eeeeeEEEEcCC
Q psy14540 89 THSADMRVYDAP 100 (291)
Q Consensus 89 ~~~~~l~v~~~~ 100 (291)
...+.|.|..++
T Consensus 89 ~~~~~l~V~~p~ 100 (102)
T 2eo1_A 89 QLSFRLQVAGQC 100 (102)
T ss_dssp ECCEEEEEESCC
T ss_pred cEEEEEEEeCCC
Confidence 456777777643
No 486
>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}
Probab=99.44 E-value=1.3e-13 Score=85.66 Aligned_cols=68 Identities=16% Similarity=0.417 Sum_probs=54.5
Q ss_pred eeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEec
Q psy14540 116 IKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNT 186 (291)
Q Consensus 116 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~ 186 (291)
+.+.+|+.+.|.|.+ .+ |.+.+.|+|||.++....++.+...+ ....|.|.++..+|+|.|+|.|.|.
T Consensus 16 v~~~~g~~v~l~C~v-~~-p~~~v~W~k~g~~i~~~~~~~i~~~~-~~~~L~I~~v~~~D~G~Y~C~a~n~ 83 (91)
T 2lvc_A 16 VHAITSECVMLACEV-DR-EDAPVRWYKDGQEVEESDFVVLENEG-PHRRLVLPATQPSDGGEFQCVAGDE 83 (91)
T ss_dssp EECCTTCCEEEEEEC-SC-TTSCCEEEETTSCCCCCSSCEEEEET-TEEEEEESSCCGGGCSEEEEECSSC
T ss_pred EEEECCCcEEEEEEE-CC-CCcEEEEEECCEEeeeeeeeeEEecC-CeEEEEeCCCChhhcEEEEEEEcce
Confidence 455689999999998 45 77889999999999888777665543 3567888888888888888887654
No 487
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=1.7e-13 Score=89.06 Aligned_cols=91 Identities=25% Similarity=0.454 Sum_probs=67.0
Q ss_pred CCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCC
Q psy14540 112 NSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDN 191 (291)
Q Consensus 112 ~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~ 191 (291)
.+....+.+|+.++|.|.+ .+.|.+.+.|++++..+..............
T Consensus 15 ~~~~~~v~~G~~v~l~C~~-~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~----------------------------- 64 (110)
T 2dm3_A 15 APGDLTVQEGKLCRMDCKV-SGLPTPDLSWQLDGKPVRPDSAHKMLVRENG----------------------------- 64 (110)
T ss_dssp CCCEEEEESSSCBCCEEEE-ECSSCCEEECBBSSSBCCCCSSEEEEECTTS-----------------------------
T ss_pred CCCcEEEeCCCEEEEEEEE-EEcCCCEEEEEECCEECCCCCceEEEEecCC-----------------------------
Confidence 3456788899999999999 6889999999999988765443322211111
Q ss_pred CceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCCC
Q psy14540 192 HSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPH 242 (291)
Q Consensus 192 ~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p~ 242 (291)
...|.|.++..+|+|.|+|.|.|..+.....+.|.|..+|.
T Consensus 65 ----------~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~p~ 105 (110)
T 2dm3_A 65 ----------VHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAKES 105 (110)
T ss_dssp ----------CEEEEESSCCGGGCSBBCEEEECSSCEEEECCEEEEECCCC
T ss_pred ----------eEEEEEeeCCcccCEEEEEEEECCCCEEEEEEEEEEeCCCC
Confidence 24577777777888888888888887778888888877664
No 488
>3c6l_A TCR 2W20 alpha chain; TCR-PMHC complex; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2
Probab=99.15 E-value=1.1e-14 Score=102.91 Aligned_cols=138 Identities=14% Similarity=0.133 Sum_probs=84.1
Q ss_pred ceeecceeeeecCCcEEEEEEecCCCCCeeEEEECC--ee---cC-C--Ce--eEeceEEee--ccceEEEEEEeecCCC
Q psy14540 5 LIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDG--YP---LA-G--DR--FVMGQYMSL--HGDVISHVNISSVRVE 72 (291)
Q Consensus 5 ~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~~--~~---~~-~--~~--~~~~~~~~~--~~~~~~~l~i~~~~~~ 72 (291)
+.+.|..+.+.+|++++|.|.+.+.+...+.|++.. +. +. . .. ....+.... .....++|+|.+++.+
T Consensus 3 v~Q~p~~v~v~~G~svtL~C~~s~~~~~~v~Wyrq~~g~~~~~li~~~~~~~~~~~~R~s~~~~~~~~~~sL~I~~v~~~ 82 (185)
T 3c6l_A 3 VRQSPQSLTVWEGETAILNCSYEDSTFDYFPWYHQFPGESPALLIAIRPVSNKKEDGRFTIFFNKREKKFSLHIADSQPG 82 (185)
Confidence 456678889999999999999876544589999853 21 11 0 00 001111111 1234578999999999
Q ss_pred CCeEEEEEEeCCCCceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEecc
Q psy14540 73 DSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPIL 149 (291)
Q Consensus 73 d~G~y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~ 149 (291)
|+|.|.|.+.+........+.|.|......+.+.+.. ..+ ..+.++|.|.+...+|.+.|.|..+...+.
T Consensus 83 DsG~Y~C~~~~~~~~fg~gT~L~V~~~~~~~~P~V~~-~~~------~~~~vtL~C~~~gf~P~p~v~~~~~~~~~~ 152 (185)
T 3c6l_A 83 DSATYFCAASDNRIFFGDGTQLVVKPNIQNPEPAVYQ-LKD------PRSQDSTLCLFTDFDSQINVPKTMESGTFI 152 (185)
Confidence 9999999987521112233456665432111111111 111 122689999997779999999987665543
No 489
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=99.43 E-value=5.2e-13 Score=87.42 Aligned_cols=95 Identities=19% Similarity=0.262 Sum_probs=64.7
Q ss_pred cCCcceeecCCCceEEEEEeeC--CCCCceeEEeECCEe-cc--CCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEe
Q psy14540 111 SNSRSIKVHSGDRAGVQCLVTK--GDPPLTISWLKNGLP-IL--SDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASN 185 (291)
Q Consensus 111 ~~~~~~~~~~g~~~~l~C~~~~--~~p~~~~~W~~~~~~-~~--~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~ 185 (291)
..+..+.+.+|+.++|.|.+.. +.|.|.|.|||+... +. ...++.+.. ........
T Consensus 12 ~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~----------~~~~~~~~--------- 72 (126)
T 2dav_A 12 EKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKE----------TFERHSRV--------- 72 (126)
T ss_dssp SCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEE----------EEETTTTE---------
T ss_pred EcCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCcCcccCCCCCceEEEcc----------cccccccc---------
Confidence 4456688999999999999842 248999999996421 11 011211110 00000000
Q ss_pred cCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEec
Q psy14540 186 TVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNV 239 (291)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~ 239 (291)
....|.|.++...|+|.|+|+|.|..+..+..+.|.|..
T Consensus 73 ---------------~~~~L~I~~v~~~DaG~Y~Cevsn~~g~~~~~~~L~V~~ 111 (126)
T 2dav_A 73 ---------------YTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHE 111 (126)
T ss_dssp ---------------EEEEEEECSCCTTSCEEEEEEEECSSCEEEECCEEEEEC
T ss_pred ---------------ceEEEEEccCCcccCEEEEEEEEeCCCcEEEEEEEEEEe
Confidence 135788899999999999999999998888899999988
No 490
>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A
Probab=99.42 E-value=5e-13 Score=83.59 Aligned_cols=73 Identities=21% Similarity=0.335 Sum_probs=58.9
Q ss_pred cCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEec
Q psy14540 111 SNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNT 186 (291)
Q Consensus 111 ~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~ 186 (291)
..+....+.+|+.+.|.|.+ .+ +.+.+.|+++|.++....++.+...+ ....|.|.++..+|+|.|+|.+.|.
T Consensus 10 ~~~~~~~v~~G~~v~l~C~v-~~-~~~~v~W~k~g~~i~~~~~~~i~~~g-~~~~L~I~~v~~~D~G~Y~C~a~n~ 82 (93)
T 1waa_A 10 KPLYGVEVFVGETAHFEIEL-SE-PDVHGQWKLKGQPLAASPDCEIIEDG-KKHILILHNCQLGMTGEVSFQAANT 82 (93)
T ss_dssp ECCCCEEEETTSCEEEEEEE-SS-SSCCCEEEETTEECCCBTTEEEEEET-TEEEEEECSCCGGGCEEEEEEETTE
T ss_pred ccCcceEEeCCCCEEEEEEE-CC-CCCeEEEEECCEECcCCCCEEEEEEC-CEEEEEECCCChhhCEEEEEEECCC
Confidence 44456789999999999999 45 45789999999999887777665433 2567999999999999999998774
No 491
>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}
Probab=99.42 E-value=1e-12 Score=99.62 Aligned_cols=137 Identities=18% Similarity=0.237 Sum_probs=78.0
Q ss_pred CcceeecCCCceEEEEEeeCCCC-----CceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecC
Q psy14540 113 SRSIKVHSGDRAGVQCLVTKGDP-----PLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTV 187 (291)
Q Consensus 113 ~~~~~~~~g~~~~l~C~~~~~~p-----~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 187 (291)
+..+.+.+|+.++|.|.+ .+.+ .+.+.|+++...- ... +.+... . .+ ..
T Consensus 22 p~~~~v~~G~~v~L~C~~-~~~~~~~~~~~~v~W~k~~~g~--~~~------------~l~~~~----~-~~------~~ 75 (268)
T 1x9q_A 22 PLSLPVSLGDQASISCRS-SQSLVHSNGNTYLRWYLQKPGQ--SPK------------VLIYKV----S-NR------VS 75 (268)
T ss_dssp CSEECCCTTCCEEEEEEE-SSCCBCTTSCBCEEEEEECTTS--CCE------------EEEETT----T-EE------CT
T ss_pred CCeEEecCCCCEEEEeEe-cCCcccccCCceEEEEEECCCC--CCE------------EEEEec----C-CC------CC
Confidence 345678899999999998 5655 5899999853110 000 000000 0 00 00
Q ss_pred CCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCcc-CCceeEEEEecCCC------------------------
Q psy14540 188 ASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVAS-DNHSSNLRVNVPPH------------------------ 242 (291)
Q Consensus 188 ~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~-~~~~~~l~v~~~p~------------------------ 242 (291)
+ ....+.+........|.|.++..+|+|.|.|.+.+..+. ......|.|..++.
T Consensus 76 ~-~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~p~~pp~~~~~~~~~~~~~~v~ 154 (268)
T 1x9q_A 76 G-VPDRFSGSGSGTDFTLKINRVEAEDLGVYFCSQSTHVPWTFGGGTKLEIKSSADDAKKDAAKKDDAKKDDAKKDGGVK 154 (268)
T ss_dssp T-SCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEC------------------------CGGGCE
T ss_pred C-CcccEEEEcCCCEEEEEECCCChhHCEEEEEEEecCCCceEcCCEEEEEccCccCCCccccccccccccccccccceE
Confidence 0 011122222233567889999999999999999876432 22334555554321
Q ss_pred CCCCCcccccCCceEEEEEEeecCCCC--ceEEEEEC
Q psy14540 243 IGPFTFGELMEGVRTQVACVVQSGDLP--LSLQWYKN 277 (291)
Q Consensus 243 ~~~~~~~~~~~g~~v~l~C~~~~~~p~--~~v~W~~~ 277 (291)
+..+....+.+|+.++|+|.+ .+.++ +.+.|+|+
T Consensus 155 ~~~~~~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~k~ 190 (268)
T 1x9q_A 155 LDETGGGLVQPGGAMKLSCVT-SGFTFGHYWMNWVRQ 190 (268)
T ss_dssp EEEECCEEECTTCCEEEEEEE-ESSCGGGCEEEEEEE
T ss_pred EECCCceEecCCCcEEEEEEe-cCccccccEEEEEEe
Confidence 001112238899999999999 66553 79999985
No 492
>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X
Probab=99.42 E-value=8.5e-13 Score=84.42 Aligned_cols=88 Identities=23% Similarity=0.345 Sum_probs=63.1
Q ss_pred cCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceEEEE
Q psy14540 119 HSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRV 198 (291)
Q Consensus 119 ~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~ 198 (291)
..++.+.|.|.+ .|.|.|.+.|+++|..+....+.... +... ...
T Consensus 14 ~~~~~~~~~c~v-~G~P~P~i~W~k~g~~l~~~~~~~~~----------~~~~---~~~--------------------- 58 (103)
T 1wwb_X 14 TSDHHWCIPFTV-KGNPKPALQWFYNGAILNESKYICTK----------IHVT---NHT--------------------- 58 (103)
T ss_dssp CCCCEEEEEEEE-ECSSCCEEEEEETTEEECCCSSEEEE----------EEEE---CSS---------------------
T ss_pred eECcEEEEEEEE-EEeCCCEEEEEECCEECCCCCcEeEE----------EEec---CCc---------------------
Confidence 457889999999 79999999999999988765432111 0000 000
Q ss_pred eccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCCC
Q psy14540 199 NEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPH 242 (291)
Q Consensus 199 ~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p~ 242 (291)
...+.|.|.++..+|+|.|+|.|.|..|....++.|.|..+|.
T Consensus 59 -~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V~~~P~ 101 (103)
T 1wwb_X 59 -EYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMGWPG 101 (103)
T ss_dssp -EEEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECCSCCCC
T ss_pred -EEEEEEEECCCCcccCEEEEEEEEeCCCcEeEEEEEEECCCCC
Confidence 0134588888888888888888888888888888888777664
No 493
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing, ATP-binding, calcium, calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Probab=99.42 E-value=1.2e-12 Score=83.31 Aligned_cols=77 Identities=23% Similarity=0.415 Sum_probs=48.2
Q ss_pred cCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCC--CceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCC
Q psy14540 111 SNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSD--AEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVA 188 (291)
Q Consensus 111 ~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~--~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~ 188 (291)
..+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+... .++..... .....|.|..+..+|.|.|+|.+.|..|
T Consensus 10 ~~~~~~~~~~G~~~~l~C~~-~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~-~~~~~L~i~~v~~~D~G~Y~C~a~n~~g 87 (100)
T 3irg_A 10 ALPSDISIDEGKVLTVACAF-TGEPTPEVTWSCGGRKIHSQEQGRFHIENT-DDLTTLIIMDVQKQDGGLYTLSLGNEFG 87 (100)
T ss_dssp CCCSEEEEETTSEEEEEEEE-EEESCCEEEEEETTEECCTTGGGTEEEEEC-SSEEEEEESSCCGGGCEEEEEEEEETTE
T ss_pred cCCCcEEEcCCCcEEEEEEE-EEcCCCceEEEECCEEeecCCCCEEEEEec-CCEEEEEEeecCcccCEEEEEEEEeCCC
Confidence 33455788899999999999 68899999999999887532 23332221 1233445555444444444444444443
Q ss_pred C
Q psy14540 189 S 189 (291)
Q Consensus 189 ~ 189 (291)
.
T Consensus 88 ~ 88 (100)
T 3irg_A 88 S 88 (100)
T ss_dssp E
T ss_pred c
Confidence 3
No 494
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.41 E-value=4.4e-13 Score=105.99 Aligned_cols=108 Identities=18% Similarity=0.270 Sum_probs=64.3
Q ss_pred CcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCC
Q psy14540 113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNH 192 (291)
Q Consensus 113 ~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~ 192 (291)
+..+.+.+|+.+.|.|.+ .| |.+.+.|++++..+..... ..+.|.
T Consensus 253 ~~~v~v~~G~~~~l~C~~-~g-p~p~i~W~~~~~~~~~~~~---------------------~~~r~~------------ 297 (361)
T 2xot_A 253 ESAWEAHLGDTLTIRCDT-KQ-QGMTKVWVSPSNEQVLSQG---------------------SNGSVS------------ 297 (361)
T ss_dssp CCCCEEETTCCEEECCCC-SS-TTCEEEEECTTSCBCCSCC---------------------SSSSEE------------
T ss_pred ccCceecCCCeEEEEeEe-eC-CCCeEEEEeCCCeeEeecc---------------------cCCceE------------
Confidence 345688899999999999 67 8899999997755432210 000000
Q ss_pred ceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCCCCCCCCcccccCCceEEEEEEeecCCCCceE
Q psy14540 193 SSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGPFTFGELMEGVRTQVACVVQSGDLPLSL 272 (291)
Q Consensus 193 ~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~g~~v~l~C~~~~~~p~~~v 272 (291)
+ ..++|.|.++..+|+|.|+|.|.|..|..+..+.|.|...+ .+|+.++|.|.+ .|.|.|+|
T Consensus 298 -----~--~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~~----------~~g~~~~l~C~~-~g~P~P~i 359 (361)
T 2xot_A 298 -----V--RNGDLFFKKVQVEDGGVYTCYAMGETFNETLSVELKVYNFT----------LHGHHDTLNAAA-DPWSHPQF 359 (361)
T ss_dssp -----E--ETTEEEESSCCTTSCEEEEEEEECSSCEEEEEEEEEEESSC----------CC-------------------
T ss_pred -----e--ecCeEEEeecCcccCEEEEEEEecCCCccEEEEEEEEEeee----------ccCCceEEEEEe-CCCCCCcc
Confidence 0 13468888899999999999999998888888888886533 588899999999 89999877
Q ss_pred E
Q psy14540 273 Q 273 (291)
Q Consensus 273 ~ 273 (291)
+
T Consensus 360 ~ 360 (361)
T 2xot_A 360 E 360 (361)
T ss_dssp -
T ss_pred c
Confidence 4
No 495
>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens}
Probab=99.41 E-value=2.3e-12 Score=84.01 Aligned_cols=105 Identities=23% Similarity=0.344 Sum_probs=67.3
Q ss_pred CceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEE
Q psy14540 86 GSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSS 165 (291)
Q Consensus 86 ~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~ 165 (291)
+.....+.|.|...| | .....+....+.+|+.+.|.|.+ .+. +.+.|++++..+....++.+...+
T Consensus 5 g~~~~~~~l~V~~~p--p----~~~~~~~~~~v~~G~~v~l~C~~-~~~--p~v~W~k~~~~l~~~~~~~~~~~~----- 70 (113)
T 2edh_A 5 SSGRTSAMLTVRALP--I----KFTEGLRNEEATEGATAVLRCEL-SKM--APVEWWKGHETLRDGDRHSLRQDG----- 70 (113)
T ss_dssp CCCCCCCCCCCCCSC--C----CEEECCCCCEECTTSCEEEEEEE-SSC--CCCEEEESSSBCCCSSSEEEEEET-----
T ss_pred CCCcEEEEEEEEcCC--C----cccccCCceEEeCCCeEEEEEEE-CCC--CcEEEEECCEECCCCCcEEEEECC-----
Confidence 334455556665443 1 12233455788999999999999 454 689999999888665554433211
Q ss_pred EEEeeCCCCCceeEEEEEEecCCCCCCceEEEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCCCC
Q psy14540 166 LSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHI 243 (291)
Q Consensus 166 l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p~~ 243 (291)
....|.|.++..+|+|.|+|.| +.......|.|..+|..
T Consensus 71 -----------------------------------~~~~L~I~~v~~~D~G~Y~C~a----~~~~~~~~l~V~~~p~~ 109 (113)
T 2edh_A 71 -----------------------------------ARCELQIRGLVAEDAGEYLCMC----GKERTSAMLTVRAMPSG 109 (113)
T ss_dssp -----------------------------------TEEEEEECSCCSTTCEEEEEEE----TTEEEEEEEEECCCCCS
T ss_pred -----------------------------------CEEEEEECCCChhhCEEEEEEe----CCCCEEEEEEEeCCCCC
Confidence 1235666777777777777777 44556677777766643
No 496
>3gsn_A RA14 TCR alpha chain (TRAV24, TRAJ49); HLA, human cytomegalovirus, PP65, T cell receptor (TCR), immune response, public response; 2.80A {Homo sapiens}
Probab=99.41 E-value=2.4e-12 Score=91.87 Aligned_cols=141 Identities=16% Similarity=0.147 Sum_probs=89.0
Q ss_pred cceeecceeeeecCCcEEEEEEecCCCCCeeEEEEC--CeecC------CC--eeEeceEEee--ccceEEEEEEeecCC
Q psy14540 4 QLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLD--GYPLA------GD--RFVMGQYMSL--HGDVISHVNISSVRV 71 (291)
Q Consensus 4 ~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~v~W~~~--~~~~~------~~--~~~~~~~~~~--~~~~~~~l~i~~~~~ 71 (291)
++.+.|..+.+.+|++++|.|.+.+.....+.|++. ++... .. .....+.... .....++|+|.+++.
T Consensus 2 ~V~Q~p~~v~v~~G~svtL~C~~s~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~l~~ 81 (199)
T 3gsn_A 2 NVEQSPQSLHVQEGDSTNFTCSFPSSNFYALHWYRWETAKSPEALFVMTLNGDEKKKGRISATLNTKEGYSYLYIKGSQP 81 (199)
T ss_dssp CCEEECSEEEEETTCCCEEEEECCCTTCCCEEEEEECTTSCCEEEEEECSTTCCCEETTEECCCBTTTTEEEEEBSSCCG
T ss_pred eEEECCCEEEEeCCCCEEEEEEEcCCCCCEEEEEEECCCCCcEEEEEECCCCCccccCceEEEECCCCCEEEEEEccCcc
Confidence 356778888999999999999998644567999983 22111 00 0011111111 234568899999999
Q ss_pred CCCeEEEEEEeCCCC-ceeeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccC
Q psy14540 72 EDSGIYQCTATNRVG-SQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILS 150 (291)
Q Consensus 72 ~d~G~y~C~~~~~~~-~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~ 150 (291)
+|+|.|.|.+..... .....+.|.|......+.+.+...... ...++|.|.+...+|...+.|.++|..+..
T Consensus 82 ~DsG~Y~Ca~~~~~~~~fG~GT~L~V~~~~~~~~P~V~~~~~~-------~~~~tl~Cl~~gf~P~i~~~~~~~~~~~~~ 154 (199)
T 3gsn_A 82 EDSATYLCARNTGNQFYFGTGTSLTVIPNIQNPDPAVYQLRDS-------KSSDKSVCLFTDFDSQTNVSQSKDSDAYIT 154 (199)
T ss_dssp GGCEEEEEEEESSSCEEECSCEEEEEECCCSSCCCEEEECCCS-------SSSSSCCEEEETCCTTCCSSCSSCSSEEEC
T ss_pred cCCccEEEEEcccccccCCCCEEEEEecccCCCCCEEEEcccC-------CCCceEEEEeecccCCeEeEeccCCCeEec
Confidence 999999999864221 122335677765321111111111111 123789999988888778999999887765
Q ss_pred C
Q psy14540 151 D 151 (291)
Q Consensus 151 ~ 151 (291)
.
T Consensus 155 ~ 155 (199)
T 3gsn_A 155 D 155 (199)
T ss_dssp C
T ss_pred C
Confidence 4
No 497
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}
Probab=99.41 E-value=5.3e-13 Score=84.14 Aligned_cols=72 Identities=26% Similarity=0.552 Sum_probs=47.3
Q ss_pred cCCcceeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCC
Q psy14540 111 SNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVAS 189 (291)
Q Consensus 111 ~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~ 189 (291)
..+....+.+|+.+.|.|.+ .+.| +.+.|++++..+....+..+. ...|.|..+...|+|.|+|.+.|..|.
T Consensus 14 ~~~~~~~v~~G~~v~l~C~~-~g~p-p~i~W~k~g~~~~~~~~~~~~-----~~~L~i~~~~~~D~G~Y~C~a~n~~g~ 85 (95)
T 2ckn_A 14 VEVESLLVHPGDLLQLRCRL-RDDV-QSINWLRDGVQLVESNRTRIT-----GEEVEVRDSIPADSGLYACVTSSPSGS 85 (95)
T ss_dssp TBBCCEEECTTSCEEEECCE-ESSC-CEEEEEBTTBCCCCCSSEEEC-----SSEEEESSCCGGGSEEEEEEEEETTEE
T ss_pred cCcceEEEcCCCeEEEEEEC-CCCC-CceEEEECCEecCCCCCEEEe-----CCEEEECCCChHHCEEEEEEeccCCCc
Confidence 34556788999999999999 5667 799999999888655444332 224555555555555555555444443
No 498
>1ntl_A CRRY-IG; immunology, complement, glycoprotein, SCR, CCP, immune system; NMR {Mus musculus}
Probab=99.40 E-value=7.7e-12 Score=104.28 Aligned_cols=138 Identities=14% Similarity=0.228 Sum_probs=83.6
Q ss_pred eecceee-eecCCcEEEEEEecC-CCC---CeeEEEECCeecCCCeeEece-EEeeccceEEEEEEeecCCCCCeEEEEE
Q psy14540 7 YKFIQQT-LQPGPPVSLKCIATG-NPT---PHISWKLDGYPLAGDRFVMGQ-YMSLHGDVISHVNISSVRVEDSGIYQCT 80 (291)
Q Consensus 7 ~~~~~~~-v~~g~~v~l~C~~~~-~~~---~~v~W~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~i~~~~~~d~G~y~C~ 80 (291)
..+.... +..+....|.|.+.+ .+. ..|+|++++..+......... .........+.|.|......|.+.|+|+
T Consensus 347 ~~~~~~~~~~~~~~~~l~C~~~~~~p~~~~i~v~W~~~~~~~~~~~t~~~~~~~n~~~~~~s~L~i~~~~~~~~~~y~C~ 426 (551)
T 1ntl_A 347 FPPKPKDVLTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTQPREEQFNSTFRSVSELPIMHQDWLNGKEFKCR 426 (551)
T ss_pred cCCCcccceeeccCcceEEEEEecccCCCceEEEEEECCccccccccCCceECCCCeEEEEEeeEcCHHHccCCceEEEE
Confidence 3333333 667889999999987 343 589999998765422111100 0011112346788888888888999999
Q ss_pred EeCCCCce--eeeeeEEEEcCCCCCcccceeccCCcceeecCCCceEEEEEeeCCCCC-ceeEEeECCEecc
Q psy14540 81 ATNRVGSQ--THSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPP-LTISWLKNGLPIL 149 (291)
Q Consensus 81 ~~~~~~~~--~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~-~~~~W~~~~~~~~ 149 (291)
+.+..... .+.+.+.+.. ...|. ... ..+. ..+..|+.++|.|.+.+.+|. ..|+|+++|+.+.
T Consensus 427 v~~~~~~~~~~~~~~~~~~~-~~~P~--V~~-~~~~-~~~~~~~~~~L~C~v~gfyP~~i~v~W~k~g~~~~ 493 (551)
T 1ntl_A 427 VNSAAFPAPIEKTISKTKGR-PKAPQ--LYT-IPPP-KEQMAKDKVSLTCMITDFFPEDITVEWQWNGQPAE 493 (551)
T ss_pred EecCCCCCCeEEEEecCCCC-CcCCc--eEE-eCCC-hhhccCCceEEEEEEEEeECCCCEEEEEECCEEcc
Confidence 98765532 2233333221 11121 111 1111 223468899999999665775 6899999999874
No 499
>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}
Probab=99.40 E-value=3.6e-12 Score=97.74 Aligned_cols=140 Identities=16% Similarity=0.224 Sum_probs=79.4
Q ss_pred ceeecCCCceEEEEEeeCCCC--CceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCC
Q psy14540 115 SIKVHSGDRAGVQCLVTKGDP--PLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNH 192 (291)
Q Consensus 115 ~~~~~~g~~~~l~C~~~~~~p--~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~ 192 (291)
...+.+|+.++|.|.+ .+.+ .+.+.|+++.... ... +.+.......... ..... ..
T Consensus 31 ~~~v~~G~~v~L~C~~-~~~~~~~~~v~W~r~~~~~--~~~------------~l~~~~~~~~~~~-----~~~~~--~~ 88 (291)
T 2gki_A 31 PELVKPGASVKMSCKA-SGYTFTSYVMHWVKQKPGQ--GLE------------WIGYINPYNDGTK-----YNEKF--KG 88 (291)
T ss_dssp CEEECTTCCEEEEEEE-ESSCGGGSCEEEEEECTTS--CCE------------EEEEEETTTTEEE-----ECGGG--BT
T ss_pred cEEecCCCCEEEEEec-cCCcccccEEEEEEECCCC--CcE------------EEEEEecCCCccc-----cCccc--CC
Confidence 4678899999999998 4655 5789999853110 000 0000000000000 00000 00
Q ss_pred ceEEEE--eccceEEEEeeeecCCCeeEEEEeeeCC-c----cCCceeEEEEec----------------CCCCCCCCcc
Q psy14540 193 SSNLRV--NEYTSSLSIATLSTGHSGNYTCVASNTV-A----SDNHSSNLRVNV----------------PPHIGPFTFG 249 (291)
Q Consensus 193 ~~~~~~--~~~~~~l~i~~~~~~~~g~y~C~~~~~~-~----~~~~~~~l~v~~----------------~p~~~~~~~~ 249 (291)
.+.+.. .....+|.|.++..+|+|.|.|.+.+.. + .......|.|.. ++.+...+..
T Consensus 89 R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~~~g~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~v~~~p~~ 168 (291)
T 2gki_A 89 KATLTSDKSSSTAYMELSSLTSEDSAVYYCARGAYKRGYAMDYWGQGTSVTVSSRGGGGSGGGGSGGGGSDLVMSQSPSS 168 (291)
T ss_dssp TBCEEEEGGGTEEEEEECSCCGGGCEEEEEEEECGGGTTCEEEECCCEEEEECC----------------CCCEECSCSE
T ss_pred CEEEEEeCCCCEEEEEECcCCHHHCEEEEEEEeccccccccceeCCCcEEEEecCCccccccccCCCCCccceEEcCCCE
Confidence 111111 1234578888888888888888888763 1 111234566655 2233333333
Q ss_pred c-ccCCceEEEEEEeecCCCCc------eEEEEEC
Q psy14540 250 E-LMEGVRTQVACVVQSGDLPL------SLQWYKN 277 (291)
Q Consensus 250 ~-~~~g~~v~l~C~~~~~~p~~------~v~W~~~ 277 (291)
. +.+|+.++|.|.+ .+.|.+ .+.|+|+
T Consensus 169 ~~v~~G~~v~L~C~~-~~~~~~~~~~~~~v~W~k~ 202 (291)
T 2gki_A 169 LAVSAGEKVTMSCKS-SQSLFNSRTRKNYLAWYQQ 202 (291)
T ss_dssp EEEETTSCEEEEEEE-SSCCEETTTTEECEEEEEE
T ss_pred EEEcCCCcEEEEEEc-CCccccccccceeEEEEEE
Confidence 3 8999999999999 777665 9999996
No 500
>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.40 E-value=8.2e-12 Score=81.39 Aligned_cols=86 Identities=17% Similarity=0.375 Sum_probs=62.3
Q ss_pred eeecCCCceEEEEEeeCCCCCceeEEeECCEeccCCCceEEeccCCceEEEEEeeCCCCCceeEEEEEEecCCCCCCceE
Q psy14540 116 IKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSN 195 (291)
Q Consensus 116 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~~~~~~~ 195 (291)
..+.+|+.+.|.|.+ . .|.+.+.|++++..+....+..+...+
T Consensus 23 ~~~~~G~~v~L~C~~-~-~p~~~v~W~k~g~~~~~~~~~~~~~~~----------------------------------- 65 (113)
T 2cpc_A 23 VAAVRLERVVLTCEL-C-RPWAEVRWTKDGEEVVESPALLLQKED----------------------------------- 65 (113)
T ss_dssp EEEETTCCEEEEEEE-S-CTTCCCEEEETTEECCCBTTBEEEECS-----------------------------------
T ss_pred EEEEcCCeEEEEEEe-c-CCCCeEEEEECCEECccCCCEEEEECC-----------------------------------
Confidence 567799999999998 4 788899999999988665444332211
Q ss_pred EEEeccceEEEEeeeecCCCeeEEEEeeeCCccCCceeEEEEecCCCCCCCC
Q psy14540 196 LRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGPFT 247 (291)
Q Consensus 196 ~~~~~~~~~l~i~~~~~~~~g~y~C~~~~~~~~~~~~~~l~v~~~p~~~~~~ 247 (291)
....|.|.++..+|+|.|+|.+.| .+..+.|.|..+|.+...+
T Consensus 66 -----~~~~L~I~~v~~~D~G~Y~C~a~n----~~~~~~l~V~~~p~~~~~p 108 (113)
T 2cpc_A 66 -----TVRRLVLPAVQLEDSGEYLCEIDD----ESASFTVTVTEPPVRIIYS 108 (113)
T ss_dssp -----SEEEEEESSCCTTTCEEEEEESSS----CEEEEEEEEECCCCCCCCC
T ss_pred -----CEEEEEECCCCcccCEEEEEEEec----CcEEEEEEEecCCchhccC
Confidence 123577777778888888888877 4557788888877655443
Done!