RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14540
(291 letters)
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30,
N-terminal eight IG domains...; immunoglobulin domain;
HET: NAG NDG; 4.19A {Drosophila melanogaster}
Length = 816
Score = 195 bits (497), Expect = 3e-57
Identities = 88/287 (30%), Positives = 131/287 (45%), Gaps = 55/287 (19%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPL-AGDRFVMGQYMSLHGDVI 61
P + F ++T++PGP V LKC+A GNPTP ISW+LDG + DR+ +GQY++++GDV+
Sbjct: 430 PVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVV 489
Query: 62 SHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSG 121
S++NI+SV D G+Y+C A ++VG HSA + VY P + +G
Sbjct: 490 SYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLP--------YIRQMEKKAIVAG 541
Query: 122 DRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTC 181
+ V C V G P +I W ++ + + + + +G +L I +
Sbjct: 542 ETLIVTCPVA-GYPIDSIVWERDNRALPINRKQKVFPNG----TLIIENVERNS------ 590
Query: 182 VASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTV-ASDNHSSNLRVNVP 240
YTCVA N S S ++V V
Sbjct: 591 --------------------------------DQATYTCVAKNQEGYSARGSLEVQVMVL 618
Query: 241 PHIGPFTFGE--LMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQPD 285
P I PF F E G + C V GDLPL++ W +G AIS+
Sbjct: 619 PRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDL 665
Score = 151 bits (383), Expect = 2e-41
Identities = 52/217 (23%), Positives = 79/217 (36%), Gaps = 18/217 (8%)
Query: 12 QTLQPGPPVSLKCIATGNPTPHISWKLDGYPL-AGDRFVMGQYMSLHGDVISHVNISSVR 70
+ + G + + C G P I W+ D L + + +L I +V R
Sbjct: 536 KAIVAGETLIVTCPVAGYPIDSIVWERDNRALPINRKQKVFPNGTLI---IENVE----R 588
Query: 71 VEDSGIYQCTATNRVG-SQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCL 129
D Y C A N+ G S S +++V P +++ G + C
Sbjct: 589 NSDQATYTCVAKNQEGYSARGSLEVQVMVLP------RIIPFAFEEGPAQVGQYLTLHCS 642
Query: 130 VTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVAS 189
V GD PL I W +G I D IT G S L+I + H+GN+TC A N
Sbjct: 643 VPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGH 702
Query: 190 DNHSSNLRVNE---YTSSLSIATLSTGHSGNYTCVAS 223
++ L V + + + G C A
Sbjct: 703 QQFTTPLNVYVPPRWILEPTDKAFAQGSDAKVECKAD 739
Score = 148 bits (374), Expect = 3e-40
Identities = 59/280 (21%), Positives = 95/280 (33%), Gaps = 55/280 (19%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVIS 62
QT+ G P C TGNP +SW DG + S
Sbjct: 344 LSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSE--------------S 389
Query: 63 HVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGD 122
+ I SV+ ED G+YQC N S SA++++ P + + + G
Sbjct: 390 VLRIESVKKEDKGMYQCFVRNDRESAEASAELKLGGRFDPPV----IRQAFQEETMEPGP 445
Query: 123 RAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCV 182
++C+ G+P ISW +G I ++ +
Sbjct: 446 SVFLKCVAG-GNPTPEISWELDGKKIANNDRYQVGQYV---------------------- 482
Query: 183 ASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPH 242
+ S L+I ++ G Y C+A + V HS+ L V P+
Sbjct: 483 -------------TVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLPY 529
Query: 243 IGPFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAIS 282
I ++ G V C V +G S+ W ++ A+
Sbjct: 530 IRQMEKKAIVAGETLIVTCPV-AGYPIDSIVWERDNRALP 568
Score = 135 bits (342), Expect = 4e-36
Identities = 42/195 (21%), Positives = 70/195 (35%), Gaps = 14/195 (7%)
Query: 7 YKFIQQTLQPGPPVSLKCIATGNPTP-HISWKLDGYPLAGDRFVMGQYMSLHGDVISHVN 65
+ F + Q G ++L C G P +I W LDG ++ D + + G S +
Sbjct: 624 FAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRG---SVLT 680
Query: 66 ISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAG 125
I +V +G + C A N G Q + + VY P G A
Sbjct: 681 IEAVEASHAGNFTCHARNLAGHQQFTTPLNVYVPP-------RWILEPTDKAFAQGSDAK 733
Query: 126 VQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSG--EYTSSLSIATLSTGHSGNYTCVA 183
V+C G P ++W K + + +S +L + + + G Y C A
Sbjct: 734 VECKAD-GFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVEEGTLHVDNIQKTNEGYYLCEA 792
Query: 184 SNTVASDNHSSNLRV 198
N + S + +
Sbjct: 793 INGIGSGLSAVIMIS 807
Score = 117 bits (295), Expect = 7e-30
Identities = 50/295 (16%), Positives = 87/295 (29%), Gaps = 63/295 (21%)
Query: 12 QTLQPGPPVSLKCIA---TGNPTPHISWKLDGYPLA------GDRFVMGQYMSLHGDVIS 62
+ + G +KC+ + +SW D ++++ LH
Sbjct: 148 EHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELH----- 202
Query: 63 HVNISSVRVEDS-GIYQCTATNRVGSQT---HSADMRVYDAPGQPQDVKLVTSNSRSIK- 117
I V ED YQC +R+ +T + V P K+V+ +K
Sbjct: 203 ---IREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKVVSLAKFDMKT 259
Query: 118 VHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSG 177
+ C G P W K + +
Sbjct: 260 YSGSSTMALLCPAQ-GYPVPVFRWYKFIEGTTRKQAVVL--------------------- 297
Query: 178 NYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRV 237
N RV + + +L I SG Y CV +N+V ++ + L V
Sbjct: 298 -----------------NDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTV 340
Query: 238 NVPPHI-GPFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQPDISITLT 291
P + G C +G+ ++ W K+G AI + + +
Sbjct: 341 TAPLSAKIDPPTQTVDFGRPAVFTCQY-TGNPIKTVSWMKDGKAIGHSESVLRIE 394
Score = 110 bits (277), Expect = 2e-27
Identities = 47/286 (16%), Positives = 80/286 (27%), Gaps = 51/286 (17%)
Query: 11 QQTLQPGPPVSLKCIATGNPTPHISW-KLDGYPLAGDRFVMGQYMSLHGD--VISHVNIS 67
+ ++C A+GNP P I W + DG + G V
Sbjct: 48 RIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVP---GLRQISSDGKLVFPPFRAE 104
Query: 68 SVRVE-DSGIYQCTATNRVGS-QTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAG 125
R E + +Y C A N+ GS + +R A ++ V G+ A
Sbjct: 105 DYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQ-------YYEADVNKEHVIRGNSAV 157
Query: 126 VQCLVTK--GDPPLTISWLKNGLPI-LSDAEITIRSSGEYTSSLSIATLSTGHS-GNYTC 181
++CL+ D +SW + AE + + L I + +Y C
Sbjct: 158 IKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQC 217
Query: 182 VASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPP 241
+ + + S T + + VP
Sbjct: 218 RTKHRLTGET-----------------------------RLSATKGRLVITEPISSAVPK 248
Query: 242 HI--GPFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQPD 285
+ F + C Q G +WYK ++
Sbjct: 249 VVSLAKFDMKTYSGSSTMALLCPAQ-GYPVPVFRWYKFIEGTTRKQ 293
Score = 85.8 bits (212), Expect = 6e-19
Identities = 32/232 (13%), Positives = 66/232 (28%), Gaps = 54/232 (23%)
Query: 65 NISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPG-----QPQDVKLVTSNSRSIKVH 119
N+ + R++ ++ A GSQT +A+ D G +P + I
Sbjct: 2 NMPNERLKWLMLFAAVALIACGSQTLAANPPDADQKGPVFLKEPTNR---------IDFS 52
Query: 120 SGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLS----TGH 175
+ A ++C + G+P I W+++ + D + S + H
Sbjct: 53 NSTGAEIECKAS-GNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVH 111
Query: 176 SGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNL 235
+ Y C+A N S + + Y + +S+ +
Sbjct: 112 AQVYACLARNQFGSIISRD-------------VHVRAVVAQYYEADVNKEHVIRGNSAVI 158
Query: 236 RVNVPPHIGPFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQPDIS 287
+ +P D + W+ + P
Sbjct: 159 KCLIPSF----------------------VADFVEVVSWHTDEEENYFPGAE 188
Score = 75.4 bits (185), Expect = 2e-15
Identities = 20/102 (19%), Positives = 42/102 (41%), Gaps = 1/102 (0%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVIS 62
P+ I + + G ++C A G P P ++WK G+ + + ++ +
Sbjct: 715 PRWILEPTDKAFAQGSDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVEE-G 773
Query: 63 HVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQ 104
+++ +++ + G Y C A N +GS + M A
Sbjct: 774 TLHVDNIQKTNEGYYLCEAINGIGSGLSAVIMISVQAHHHHH 815
Score = 45.3 bits (107), Expect = 2e-05
Identities = 10/78 (12%), Positives = 23/78 (29%), Gaps = 5/78 (6%)
Query: 205 LSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNV--PPHI--GPFTFGELMEGVRTQVA 260
+++ + VA S ++N P P + ++
Sbjct: 1 MNMPNERLKWLMLFAAVALIACGSQTLAANPPDADQKGPVFLKEPTNRIDFSNSTGAEIE 60
Query: 261 CVVQSGDLPLSLQWYKNG 278
C SG+ + W ++
Sbjct: 61 CKA-SGNPMPEIIWIRSD 77
Score = 34.9 bits (80), Expect = 0.034
Identities = 8/64 (12%), Positives = 16/64 (25%), Gaps = 6/64 (9%)
Query: 166 LSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTS------SLSIATLSTGHSGNYT 219
+++ + VA S ++N + + S
Sbjct: 1 MNMPNERLKWLMLFAAVALIACGSQTLAANPPDADQKGPVFLKEPTNRIDFSNSTGAEIE 60
Query: 220 CVAS 223
C AS
Sbjct: 61 CKAS 64
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL
structural protein; 3.30A {Oryctolagus cuniculus}
Length = 570
Score = 174 bits (444), Expect = 8e-51
Identities = 56/281 (19%), Positives = 95/281 (33%), Gaps = 53/281 (18%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVIS 62
P K + L G + KC TG I+W D + G Y + +
Sbjct: 198 PFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPG----GNYKMTLVENTA 253
Query: 63 HVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGD 122
+ + V D+G Y C A+N G + SA + V + P + + S V +
Sbjct: 254 TLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPP------RFIKKLEPSRIVKQDE 307
Query: 123 RAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCV 182
+C + G P + + W K+ I ++ +
Sbjct: 308 HTRYECKIG-GSPEIKVLWYKDETEIQESSKFRMSFVES--------------------- 345
Query: 183 ASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPH 242
+ L + LS SG+YTC A N S + S++L+V PP
Sbjct: 346 -------------------VAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPV 386
Query: 243 I-GPFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAIS 282
E ++G + C + G P + W+K+ +
Sbjct: 387 FRKKPHPVETLKGADVHLECEL-QGTPPFQVSWHKDKRELR 426
Score = 164 bits (416), Expect = 8e-47
Identities = 56/284 (19%), Positives = 96/284 (33%), Gaps = 54/284 (19%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPL-AGDRFVMGQYMSLHGDVI 61
P K G PV+ +C G+ +SW DG L +
Sbjct: 102 PSFARKLKDVHETLGFPVAFECRINGSEPLQVSWYKDGELLKDDANLQTSFI-----HNV 156
Query: 62 SHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSG 121
+ + I G Y C+A+N +G+ + SA + + + P S+ + G
Sbjct: 157 ATLQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEHEVPPF----FDLKPVSVDLALG 212
Query: 122 DRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTC 181
+ +C VT G P+ I+W K+ I +
Sbjct: 213 ESGTFKCHVT-GTAPIKITWAKDNREIRPGGNYKMTLVE--------------------- 250
Query: 182 VASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPP 241
T++L++ ++ G +G YTC ASN D+ S+ L V PP
Sbjct: 251 -------------------NTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPP 291
Query: 242 HI--GPFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQ 283
+ + T+ C + G + + WYK+ I +
Sbjct: 292 RFIKKLEPSRIVKQDEHTRYECKI-GGSPEIKVLWYKDETEIQE 334
Score = 163 bits (415), Expect = 1e-46
Identities = 52/282 (18%), Positives = 99/282 (35%), Gaps = 54/282 (19%)
Query: 11 QQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVR 70
+ ++ +C G+P + W D + ++ + + ++
Sbjct: 300 SRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLE----MYNLS 355
Query: 71 VEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLV 130
VEDSG Y C A N GS + S ++V + P + ++ G ++C +
Sbjct: 356 VEDSGDYTCEAHNAAGSASSSTSLKVKEPP-------VFRKKPHPVETLKGADVHLECEL 408
Query: 131 TKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASD 190
G PP +SW K+ + S + I S
Sbjct: 409 Q-GTPPFQVSWHKDKRELRSGKKYKIMSEN------------------------------ 437
Query: 191 NHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHI-GPFTFG 249
+ +S+ I + + G Y C ASN V SD ++ + PP +
Sbjct: 438 ----------FLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLKAPPRFVKKLSDI 487
Query: 250 ELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQPDISITLT 291
+ G Q+ + G P+S+ W+K+ I + +I ++
Sbjct: 488 STVVGEEVQLQATI-EGAEPISVAWFKDKGEIVRESDNIWIS 528
Score = 154 bits (391), Expect = 3e-43
Identities = 60/281 (21%), Positives = 96/281 (34%), Gaps = 48/281 (17%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVIS 62
P I G P++L+C G P I+W + L Q+ + ++
Sbjct: 6 PYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASLV- 64
Query: 63 HVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGD 122
I+ V D G Y C A N VG+ SA + + + P + + G
Sbjct: 65 ---INKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPS----FARKLKDVHETLGF 117
Query: 123 RAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCV 182
+C + G PL +SW K+G + DA + ++L I H G Y C
Sbjct: 118 PVAFECRIN-GSEPLQVSWYKDGELLKDDANLQTSFIHN-VATLQILQTDQSHVGQYNCS 175
Query: 183 ASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPH 242
ASN + + + S+ L ++E+ VPP
Sbjct: 176 ASNPLGTASSSAKLTLSEH------------------------------------EVPPF 199
Query: 243 I-GPFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAIS 282
+L G C V +G P+ + W K+ I
Sbjct: 200 FDLKPVSVDLALGESGTFKCHV-TGTAPIKITWAKDNREIR 239
Score = 153 bits (387), Expect = 1e-42
Identities = 48/202 (23%), Positives = 78/202 (38%), Gaps = 20/202 (9%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPL-AGDRFVM---GQYMSLHG 58
P K G V L+C G P +SW D L +G ++ + S+H
Sbjct: 385 PVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIH- 443
Query: 59 DVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKV 118
I +V D G YQC A+N VGS T + + P I
Sbjct: 444 -------ILNVDSADIGEYQCKASNDVGSDTCVGSITLKAPP-------RFVKKLSDIST 489
Query: 119 HSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGN 178
G+ +Q + G P++++W K+ I+ +++ S E ++L + ++G
Sbjct: 490 VVGEEVQLQATIE-GAEPISVAWFKDKGEIVRESDNIWISYSENIATLQFSRAEPANAGK 548
Query: 179 YTCVASNTVASDNHSSNLRVNE 200
YTC N + + L V E
Sbjct: 549 YTCQIKNEAGTQECFATLSVLE 570
Score = 78.7 bits (194), Expect = 1e-16
Identities = 18/98 (18%), Positives = 36/98 (36%), Gaps = 3/98 (3%)
Query: 1 SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDV 60
+ P+ + K + G V L+ G ++W D + + + +
Sbjct: 476 APPRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRES---DNIWISYSEN 532
Query: 61 ISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYD 98
I+ + S ++G Y C N G+Q A + V +
Sbjct: 533 IATLQFSRAEPANAGKYTCQIKNEAGTQECFATLSVLE 570
Score = 70.6 bits (173), Expect = 6e-14
Identities = 33/184 (17%), Positives = 60/184 (32%), Gaps = 51/184 (27%)
Query: 114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLST 173
++ G+ +QC V G P + I+W K + S ++
Sbjct: 13 EHVEAAIGEPITLQCKVD-GTPEIRIAWYKEHTKLRSAPAYKMQFKNN------------ 59
Query: 174 GHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSS 233
+SL I + G YTC A N+V + S+
Sbjct: 60 ----------------------------VASLVINKVDHSDVGEYTCKAENSVGAVASSA 91
Query: 234 NLRVNVPPHIGPFTFGELMEGVRTQV------ACVVQSGDLPLSLQWYKNGLAISQ-PDI 286
L + P +F ++ V + C + +G PL + WYK+G + ++
Sbjct: 92 VLVIKERKL--PPSFARKLKDVHETLGFPVAFECRI-NGSEPLQVSWYKDGELLKDDANL 148
Query: 287 SITL 290
+
Sbjct: 149 QTSF 152
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI
cardiomyopathy, disease mutation, disulfide bond,
immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Length = 197
Score = 156 bits (395), Expect = 2e-47
Identities = 40/199 (20%), Positives = 68/199 (34%), Gaps = 11/199 (5%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPL-AGDRFVMGQYMSLHGDVI 61
P + + T + G L C G P P I W G L ++ M
Sbjct: 8 PGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKM-----SSDGRT 62
Query: 62 SHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSG 121
+ + + ED G+Y C ATN VG S+ + + P L G
Sbjct: 63 HTLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPL----KEKYYGAVG 118
Query: 122 DRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTC 181
+ + G P ++W + + ITI ++ YT + H+G Y
Sbjct: 119 STLRLHVMYI-GRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKV 177
Query: 182 VASNTVASDNHSSNLRVNE 200
SN + + ++ + +
Sbjct: 178 QLSNVFGTVDAILDVEIQD 196
Score = 75.5 bits (186), Expect = 1e-16
Identities = 30/181 (16%), Positives = 56/181 (30%), Gaps = 47/181 (25%)
Query: 114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLST 173
+ + G+ A + C + G P I W + G ++ + + S G T +L++
Sbjct: 15 KDVTTKLGEAAQLSCQIV-GRPLPDIKWYRFGKELIQSRKYKMSSDGR-THTLTV----- 67
Query: 174 GHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSS 233
D G YTC+A+N V SS
Sbjct: 68 ----------MTEEQED------------------------EGVYTCIATNEVGEVETSS 93
Query: 234 NLRVNVPPHIGPFTFGE----LMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQ-PDISI 288
L + P P + G ++ + G ++ W+ + +I+I
Sbjct: 94 KLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVMY-IGRPVPAMTWFHGQKLLQNSENITI 152
Query: 289 T 289
Sbjct: 153 E 153
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor
tyrosine kinase, growth factor cytoki dimerization,
transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Length = 524
Score = 160 bits (405), Expect = 1e-45
Identities = 49/289 (16%), Positives = 91/289 (31%), Gaps = 47/289 (16%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTP-HISWKLDGYPL-AGDRFVMGQYMSLHGDV 60
P + L+ G ++ C + + +WK + +++ + + +
Sbjct: 212 PVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYER 271
Query: 61 ISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHS 120
+ + ISS RV DSG++ C A N GS + + V D + + + ++ V+
Sbjct: 272 QATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGF----INIFPMINTTVFVND 327
Query: 121 GDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYT 180
G+ + P W+ E +S E
Sbjct: 328 GENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNI---------------- 371
Query: 181 CVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVP 240
Y S L + L G YT + SN+ + + N+ VN
Sbjct: 372 -------------------RYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVNTK 412
Query: 241 PHIGPFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQPDISIT 289
P I V + CV +G ++ WY + S+
Sbjct: 413 PEI-----LTYDRLVNGMLQCVA-AGFPEPTIDWYFCPGTEQRCSASVL 455
Score = 126 bits (317), Expect = 4e-33
Identities = 43/285 (15%), Positives = 81/285 (28%), Gaps = 48/285 (16%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWK-LDGYPLAGDRFVMGQYMSLHGDVI 61
+L + ++C T + S K G PL D + G +I
Sbjct: 115 AKLFLVDRSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLPKDLRFI--PDPKAGIMI 172
Query: 62 SHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSG 121
V + C+ S S + P + V +V+ + S + G
Sbjct: 173 KSVKRA----YHRLCLHCSVDQEGKSV-LSEKFILKVRPA-FKAVPVVSVSKASYLLREG 226
Query: 122 DRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTC 181
+ V C + + +W + + G++
Sbjct: 227 EEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFN------------------ 268
Query: 182 VASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPP 241
E ++L+I++ SG + C A+NT S N ++ L V
Sbjct: 269 -----------------YERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKG 311
Query: 242 HIGPFTFG----ELMEGVRTQVACVVQSGDLPLSLQWYKNGLAIS 282
I F + +G + ++ P QW +
Sbjct: 312 FINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFT 356
Score = 117 bits (295), Expect = 4e-30
Identities = 29/202 (14%), Positives = 53/202 (26%), Gaps = 27/202 (13%)
Query: 12 QTLQPGPPVSLKCIATGNPTP-HISWKLDGYPLAGDRFVMGQYMSLHGDVISHV-NISSV 69
+ G V L P P H W + + +++ +
Sbjct: 323 VFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRL 382
Query: 70 RVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCL 129
+ + G Y +N + + ++ V P + +QC+
Sbjct: 383 KGTEGGTYTFLVSNSDVNAAIAFNVYVNTKP-------------EILTYDRLVNGMLQCV 429
Query: 130 VTKGDPPLTISWLKNGLPILSDAE-----------ITIRSSGEYTSSLSIATLSTGHSGN 178
G P TI W + + G+ SI + + H+G
Sbjct: 430 AA-GFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGT 488
Query: 179 YTCVASNTVASDNHSSNLRVNE 200
C A N V + N
Sbjct: 489 VECKAYNDVGKTSAYFNFAFKG 510
Score = 103 bits (259), Expect = 3e-25
Identities = 36/291 (12%), Positives = 70/291 (24%), Gaps = 70/291 (24%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVIS 62
P + ++ G + L C G + W + + + +
Sbjct: 37 PSIHPGKSDLIVRVGDEIRLLCTDPGF----VKWTFEILDETNE------------NKQN 80
Query: 63 HVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGD 122
++G Y CT + + + + + V D + RS+ +
Sbjct: 81 EWITEKAEATNTGKYTCTNKHGLSNSIY---VFVRDPA-------KLFLVDRSLYGKEDN 130
Query: 123 RAGVQCLVTKGDPPLTISWLK--NGLPILSDAEITIRSSGEYTSSLSIATLS-TGHSGNY 179
V+C +T DP +T LK G P+ D + I ++ H
Sbjct: 131 DTLVRCPLT--DPEVTNYSLKGCQGKPLPKDLRFIPDPKA----GIMIKSVKRAYHRLCL 184
Query: 180 TCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNV 239
C S +
Sbjct: 185 HCSVDQEG-KSVLSEKFILKVRP---------------------------------AFKA 210
Query: 240 PPHIGPFTFG-ELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQPDISIT 289
P + L EG V C ++ + W + + +
Sbjct: 211 VPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNS 261
Score = 72.8 bits (178), Expect = 1e-14
Identities = 21/104 (20%), Positives = 32/104 (30%), Gaps = 11/104 (10%)
Query: 13 TLQPGPPVSLKCIATGNPTPHISWKLDGYP--------LAGDRFVMGQYMSLHGDVISHV 64
T L+C+A G P P I W L D + G ++
Sbjct: 417 TYDRLVNGMLQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQS 476
Query: 65 NISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPG---QPQD 105
+I S + +G +C A N VG + + P
Sbjct: 477 SIDSSAFKHNGTVECKAYNDVGKTSAYFNFAFKGNNKEQIHPHH 520
Score = 44.3 bits (104), Expect = 2e-05
Identities = 15/156 (9%), Positives = 34/156 (21%), Gaps = 50/156 (32%)
Query: 175 HSGNYTCV----ASNTVASDNHSSNLRVNE------------------------------ 200
+ ++ CV S S +
Sbjct: 6 GAWDFLCVLLLLLRVQTGSSQPSVSPGEPSPPSIHPGKSDLIVRVGDEIRLLCTDPGFVK 65
Query: 201 ------------YTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIG-PFT 247
+ ++G YTC + +++ + + V P +
Sbjct: 66 WTFEILDETNENKQNEWITEKAEATNTGKYTCTNKHGLSNSIY---VFVRDPAKLFLVDR 122
Query: 248 FGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQ 283
E T V C + ++ G + +
Sbjct: 123 SLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLPK 158
Score = 39.6 bits (92), Expect = 8e-04
Identities = 12/83 (14%), Positives = 24/83 (28%), Gaps = 10/83 (12%)
Query: 214 HSGNYTCV----ASNTVASDNHSSNLRVNVPPHIGP-FTFGELMEGVRTQVACVVQSGDL 268
+ ++ CV S S + PP I P + + G ++ C
Sbjct: 6 GAWDFLCVLLLLLRVQTGSSQPSVSPGEPSPPSIHPGKSDLIVRVGDEIRLLCTDPG--- 62
Query: 269 PLSLQWYKNGLAISQPDISITLT 291
++W L + +
Sbjct: 63 --FVKWTFEILDETNENKQNEWI 83
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein;
1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Length = 284
Score = 154 bits (391), Expect = 1e-45
Identities = 57/289 (19%), Positives = 96/289 (33%), Gaps = 54/289 (18%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVIS 62
P K + L G + KC TG I+W D + G Y + +
Sbjct: 6 PFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPG----GNYKMTLVENTA 61
Query: 63 HVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGD 122
+ + V D+G Y C A+N G + SA + V + P + + S V +
Sbjct: 62 TLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPP------RFIKKLEPSRIVKQDE 115
Query: 123 RAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCV 182
+C + G P + + W K+ I ++ +
Sbjct: 116 HTRYECKIG-GSPEIKVLWYKDETEIQESSKFRMSFVES--------------------- 153
Query: 183 ASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPH 242
+ L + LS SG+YTC A N S + S++L+V PP
Sbjct: 154 -------------------VAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPV 194
Query: 243 I-GPFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQ-PDISIT 289
E ++G + C + G P + W+K+ + I
Sbjct: 195 FRKKPHPVETLKGADVHLECEL-QGTPPFQVSWHKDKRELRSGKKYKIM 242
Score = 148 bits (376), Expect = 2e-43
Identities = 43/189 (22%), Positives = 77/189 (40%), Gaps = 15/189 (7%)
Query: 11 QQTLQPGPPVSLKCIATGNPTPHISWKLDGYPL-AGDRFVMGQYMSLHGDVISHVNISSV 69
+ ++ +C G+P + W D + +F M S+ + + ++
Sbjct: 108 SRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAV-----LEMYNL 162
Query: 70 RVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCL 129
VEDSG Y C A N GS + S ++V + P + ++ G ++C
Sbjct: 163 SVEDSGDYTCEAHNAAGSASSSTSLKVKEPP-------VFRKKPHPVETLKGADVHLECE 215
Query: 130 VTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVAS 189
+ G PP +SW K+ + S + I S +S+ I + + G Y C ASN V S
Sbjct: 216 LQ-GTPPFQVSWHKDKRELRSGKKYKIMSENF-LTSIHILNVDSADIGEYQCKASNDVGS 273
Query: 190 DNHSSNLRV 198
++ +
Sbjct: 274 YTCVGSITL 282
Score = 81.3 bits (201), Expect = 4e-18
Identities = 28/98 (28%), Positives = 39/98 (39%), Gaps = 12/98 (12%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPL-AGDRFVM---GQYMSLHG 58
P K G V L+C G P +SW D L +G ++ + S+H
Sbjct: 193 PVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIH- 251
Query: 59 DVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRV 96
I +V D G YQC A+N VGS T + +
Sbjct: 252 -------ILNVDSADIGEYQCKASNDVGSYTCVGSITL 282
Score = 31.2 bits (71), Expect = 0.34
Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 5/55 (9%)
Query: 239 VPPHI--GPFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAI-SQPDISITL 290
PP P + +L G C V +G P+ + W K+ I + +TL
Sbjct: 4 APPFFDLKPVSV-DLALGESGTFKCHV-TGTAPIKITWAKDNREIRPGGNYKMTL 56
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A
2f8v_A
Length = 194
Score = 149 bits (378), Expect = 9e-45
Identities = 49/196 (25%), Positives = 78/196 (39%), Gaps = 8/196 (4%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVIS 62
P + G + + +G P P +SW DG ++ Q G +
Sbjct: 6 PTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGR--A 63
Query: 63 HVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGD 122
+ I +V +SG Y ATN G T +A++ V P +S+ V G
Sbjct: 64 KLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPN----FVQRLQSMTVRQGS 119
Query: 123 RAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCV 182
+ +Q VT G P + + ++G I S + I G+ SL IA SG Y+
Sbjct: 120 QVRLQVRVT-GIPTPVVKFYRDGAEIQSSLDFQISQEGD-LYSLLIAEAYPEDSGTYSVN 177
Query: 183 ASNTVASDNHSSNLRV 198
A+N+V ++ L V
Sbjct: 178 ATNSVGRATSTAELLV 193
Score = 72.1 bits (177), Expect = 2e-15
Identities = 30/179 (16%), Positives = 63/179 (35%), Gaps = 41/179 (22%)
Query: 114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEY-TSSLSIATLS 172
+S+ V G A + ++ G P +SW ++G I + ++ S + L+I ++
Sbjct: 13 QSVVVLEGSTATFEAHIS-GFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVT 71
Query: 173 TGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHS 232
+SG Y+ A+N ++ L V
Sbjct: 72 KANSGRYSLKATNGSGQATSTAELLVKA-------------------------------- 99
Query: 233 SNLRVNVPPHI-GPFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQ-PDISIT 289
PP+ + +G + ++ V +G +++Y++G I D I+
Sbjct: 100 ----ETAPPNFVQRLQSMTVRQGSQVRLQVRV-TGIPTPVVKFYRDGAEIQSSLDFQIS 153
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain,
vegfr-2, growth factor receptor, VEGF LI
hormone-signaling protein complex, angiogenesis; 3.20A
{Homo sapiens} PDB: 3v6b_R
Length = 772
Score = 158 bits (401), Expect = 4e-44
Identities = 58/299 (19%), Positives = 102/299 (34%), Gaps = 58/299 (19%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGD------RFVMGQYMSL 56
++ L G + L C A I + + R + Q S
Sbjct: 225 DVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSE 284
Query: 57 HGDVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSI 116
+S + I V D G+Y C A++ + ++ +S +RV++ P V + +
Sbjct: 285 MKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKP----FVAFGSGMESLV 340
Query: 117 KVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHS 176
+ G+R + G PP I W KNG+P+ S+ I + L+I +S +
Sbjct: 341 EATVGERVRIPAKYL-GYPPPEIKWYKNGIPLESNHTI------KAGHVLTIMEVSERDT 393
Query: 177 GNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLR 236
GNYT + +N ++ + S + +L
Sbjct: 394 GNYTVILTNPISKEKQSHVV-------------------------------------SLV 416
Query: 237 VNVPPHIGPFTFGE----LMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQPDISITLT 291
V VPP IG + G + C V + P + WY + S ++
Sbjct: 417 VYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVS 475
Score = 154 bits (390), Expect = 1e-42
Identities = 49/280 (17%), Positives = 79/280 (28%), Gaps = 19/280 (6%)
Query: 12 QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRV 71
G V + G P P I W +G PL + + + L I V
Sbjct: 340 VEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTIKAGH-VLT--------IMEVSE 390
Query: 72 EDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVT 131
D+G Y TN + + S + + P + + S G + C V
Sbjct: 391 RDTGNYTVILTNPISKEKQSHVVSLVVYV--PPQIGEKSLISPVDSYQYGTTQTLTCTVY 448
Query: 132 KGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDN 191
PP I W ++ S ++ GN + +
Sbjct: 449 AIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGN-------KIEVNK 501
Query: 192 HSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGPFTFGEL 251
+ L + + ++ + S Y C A N V + V P I +
Sbjct: 502 NQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRGERVISFHVTRGPEITLQPDMQP 561
Query: 252 MEGVRTQVACVVQSGDLPLSLQWYKNGLAISQPDISITLT 291
E + C +L WYK G + T
Sbjct: 562 TEQESVSLWCTA-DRSTFENLTWYKLGPQPLPIHVGELPT 600
Score = 132 bits (333), Expect = 6e-35
Identities = 37/214 (17%), Positives = 70/214 (32%), Gaps = 23/214 (10%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDR--------------- 47
I VSL C A + +++W G
Sbjct: 550 GPEITLQPDMQPTEQESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTL 609
Query: 48 -FVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDV 106
+ S + I + + + ++D G Y C A +R + H ++
Sbjct: 610 WKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLERVA--- 666
Query: 107 KLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSL 166
+T N + G+ V C + G+PP I W K+ ++ D+ I ++ +L
Sbjct: 667 PTITGNLENQTTSIGESIEVSCTAS-GNPPPQIMWFKDNETLVEDSGIVLKDG---NRNL 722
Query: 167 SIATLSTGHSGNYTCVASNTVASDNHSSNLRVNE 200
+I + G YTC A + + + +
Sbjct: 723 TIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEG 756
Score = 126 bits (316), Expect = 1e-32
Identities = 44/308 (14%), Positives = 81/308 (26%), Gaps = 65/308 (21%)
Query: 11 QQTLQPGPPVSLKCIATGNPTP-HISWKLDGYPLAGDRFVM------------------- 50
+ Q G +L C P P HI W +
Sbjct: 432 VDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDF 491
Query: 51 ----------GQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAP 100
Q+ + G + + S +Y+C A N+VG V P
Sbjct: 492 QGGNKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRGERVISFHVTRGP 551
Query: 101 GQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSG 160
+ ++ + + C ++W K G L + +
Sbjct: 552 --------EITLQPDMQPTEQESVSLWCTAD-RSTFENLTWYKLGPQPLPIHVGELPTPV 602
Query: 161 EYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTC 220
+T S + + + S G+Y C
Sbjct: 603 CKNLDTLWKLNATMFSNST--------------------NDILIMELKNASLQDQGDYVC 642
Query: 221 VASNTVASDNHSSNLRVNVPPHIGP-FTFG----ELMEGVRTQVACVVQSGDLPLSLQWY 275
+A + H ++ V + P T G +V+C SG+ P + W+
Sbjct: 643 LAQDRKTKKRHCVVRQLTVLERVAPTITGNLENQTTSIGESIEVSCTA-SGNPPPQIMWF 701
Query: 276 KNGLAISQ 283
K+ + +
Sbjct: 702 KDNETLVE 709
Score = 118 bits (297), Expect = 4e-30
Identities = 44/286 (15%), Positives = 90/286 (31%), Gaps = 48/286 (16%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTP-HISWKLDGYPLAGDRFVMGQYMSLHGDVI 61
+ + T V + C+ + + + + D G +S
Sbjct: 129 VSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPD----GNRISWDSK-- 182
Query: 62 SHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSG 121
I S + +G+ C A S + V +V S S I++ G
Sbjct: 183 KGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIY---DVVLSPSHGIELSVG 239
Query: 122 DRAGVQCLVT-KGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYT 180
++ + C + + + +W +
Sbjct: 240 EKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLK--------------------- 278
Query: 181 CVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVP 240
S + ++ S+L+I ++ G YTC AS+ + + +S+ +RV+
Sbjct: 279 -----------TQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEK 327
Query: 241 PHIGPFTFG----ELMEGVRTQVACVVQSGDLPLSLQWYKNGLAIS 282
P + + E G R ++ G P ++WYKNG+ +
Sbjct: 328 PFVAFGSGMESLVEATVGERVRIPAKY-LGYPPPEIKWYKNGIPLE 372
Score = 109 bits (273), Expect = 6e-27
Identities = 33/229 (14%), Positives = 61/229 (26%), Gaps = 19/229 (8%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVIS 62
P+L + T++ + + C G W + V G
Sbjct: 32 PRLSIQKDILTIKANTTLQITC--RGQRDLDWLWPNNQSGSEQRVEVT---ECSDGLFCK 86
Query: 63 HVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGD 122
+ I V D+G Y+C + ++ Y +P I +
Sbjct: 87 TLTIPKVIGNDTGAYKCFYRETDLASVIYVYVQDYRSPFIASVSD--QHGVVYITENKNK 144
Query: 123 RAGVQCLVTKGDPPLTIS-WLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTC 181
+ CL + + +++ + I+ S +I + ++G C
Sbjct: 145 TVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSKK----GFTIPSYMISYAGMVFC 200
Query: 182 VASNTVASDNHSSNLRVNEY-------TSSLSIATLSTGHSGNYTCVAS 223
A S + V S LS G C A
Sbjct: 201 EAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTAR 249
Score = 92.1 bits (228), Expect = 5e-21
Identities = 25/226 (11%), Positives = 57/226 (25%), Gaps = 46/226 (20%)
Query: 66 ISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAG 125
+ S + ++ C T S + + P+ ++ + + +
Sbjct: 1 MQSKVLLAVALWLCVETRAASVGLPSVSLDL------PR----LSIQKDILTIKANTTLQ 50
Query: 126 VQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASN 185
+ C +G L W N E+T S G + +L+I + +G Y C
Sbjct: 51 ITC---RGQRDLDWLWPNNQSGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAYKCFYRE 107
Query: 186 TVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGP 245
T + ++ + +
Sbjct: 108 TDLASVIYVYVQDYR---------------------------------SPFIASVSDQHG 134
Query: 246 FTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQPDISITLT 291
+ + + C+ +L +SL I+
Sbjct: 135 VVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWD 180
Score = 81.7 bits (201), Expect = 1e-17
Identities = 28/102 (27%), Positives = 41/102 (40%), Gaps = 6/102 (5%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVIS 62
P + QT G + + C A+GNP P I W D L D + G+
Sbjct: 667 PTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVED----SGIVLKDGN--R 720
Query: 63 HVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQ 104
++ I VR ED G+Y C A + +G A + A +
Sbjct: 721 NLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQEKTN 762
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo
sapiens} PDB: 3p40_A*
Length = 404
Score = 152 bits (385), Expect = 1e-43
Identities = 44/283 (15%), Positives = 86/283 (30%), Gaps = 39/283 (13%)
Query: 11 QQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVR 70
+ P + ++C A GNP P W + + G ++
Sbjct: 26 DHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSGTLVIDFRSGGRP 85
Query: 71 VEDSGIYQCTATNRVGS-QTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCL 129
E G YQC A N+ G+ ++ ++V +P N + V G +QC
Sbjct: 86 EEYEGEYQCFARNKFGTALSNRIRLQVSKSP------LWPKENLDPVVVQEGAPLTLQCN 139
Query: 130 VTKGDPPLTISWLKNGLPILSDAE-ITIRSSGEYTSSLSIATLSTG-HSGNYTCVASNTV 187
G P I W+ + + ++ + ++ +G L + + +Y+C A
Sbjct: 140 PPPGLPSPVIFWMSSSMEPITQDKRVSQGHNG----DLYFSNVMLQDMQTDYSCNARFHF 195
Query: 188 ASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGPFT 247
N + V + + + G +
Sbjct: 196 THTIQQKN-------------------------PFTLKVLTTRGVAERTPSFMYPQGTAS 230
Query: 248 FGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQPDISITL 290
++ G+ + C+ SG + WYK G +
Sbjct: 231 SQMVLRGMDLLLECIA-SGVPTPDIAWYKKGGDLPSDKAKFEN 272
Score = 144 bits (365), Expect = 1e-40
Identities = 49/192 (25%), Positives = 81/192 (42%), Gaps = 23/192 (11%)
Query: 12 QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRV 71
Q + G + L+CIA+G PTP I+W G L D+ + + I++V
Sbjct: 232 QMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKAKFENF-------NKALRITNVSE 284
Query: 72 EDSGIYQCTATNRVGSQTHSADMRVYDAP---GQPQDVKLVTSNSRSIKVHSGDRAGVQC 128
EDSG Y C A+N++GS H+ +RV AP +P+++ + G+ + C
Sbjct: 285 EDSGEYFCLASNKMGSIRHTISVRVKAAPYWLDEPKNL----------ILAPGEDGRLVC 334
Query: 129 LVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVA 188
G+P T+ W+ NG P+ S R ++ Y C SN
Sbjct: 335 RAN-GNPKPTVQWMVNGEPLQSAPPNPNREVAG--DTIIFRDTQISSRAVYQCNTSNEHG 391
Query: 189 SDNHSSNLRVNE 200
++ + V +
Sbjct: 392 YLLANAFVSVLD 403
Score = 125 bits (315), Expect = 2e-33
Identities = 58/292 (19%), Positives = 97/292 (33%), Gaps = 69/292 (23%)
Query: 8 KFIQQTLQP-----GPPVSLKCIAT-GNPTPHISWKLDGYPL--AGDRFVMGQYMSLHGD 59
+ ++ L P G P++L+C G P+P I W R G L+
Sbjct: 117 LWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNGDLY-- 174
Query: 60 VISHVNISSVRVEDS-GIYQCTATNRVG---SQTHSADMRVYDAPGQPQD---VKLVTSN 112
S+V ++D Y C A Q + ++V G +
Sbjct: 175 ------FSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGT 228
Query: 113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLS 172
+ S V G ++C+ + G P I+W K G + SD
Sbjct: 229 ASSQMVLRGMDLLLECIAS-GVPTPDIAWYKKGGDLPSD--------------------- 266
Query: 173 TGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHS 232
+ + +L I +S SG Y C+ASN + S H+
Sbjct: 267 ----------------------KAKFENFNKALRITNVSEEDSGEYFCLASNKMGSIRHT 304
Query: 233 SNLRVNVPPHI-GPFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQ 283
++RV P+ L G ++ C +G+ ++QW NG +
Sbjct: 305 ISVRVKAAPYWLDEPKNLILAPGEDGRLVCRA-NGNPKPTVQWMVNGEPLQS 355
Score = 79.1 bits (195), Expect = 6e-17
Identities = 26/96 (27%), Positives = 38/96 (39%), Gaps = 5/96 (5%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVIS 62
P + + L PG L C A GNP P + W ++G PL + GD I
Sbjct: 313 PYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPP--NPNREVAGDTII 370
Query: 63 HVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYD 98
++ +YQC +N G +A + V D
Sbjct: 371 ---FRDTQISSRAVYQCNTSNEHGYLLANAFVSVLD 403
Score = 63.3 bits (154), Expect = 1e-11
Identities = 27/184 (14%), Positives = 49/184 (26%), Gaps = 44/184 (23%)
Query: 113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLS 172
++ V D ++C G+P + W +N + + + +L I S
Sbjct: 24 AKDHIVDPRDNILIECEAK-GNPAPSFHWTRNSRFFNIAKDPRVSMR-RRSGTLVIDFRS 81
Query: 173 TGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASN---TVASD 229
G + G Y C A N T S
Sbjct: 82 GGRPEE-----------------------------------YEGEYQCFARNKFGTALS- 105
Query: 230 NHSSNLRVNVPPHIGPFTFG--ELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQPDIS 287
+ L+V+ P + EG + C G + W + + D
Sbjct: 106 -NRIRLQVSKSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKR 164
Query: 288 ITLT 291
++
Sbjct: 165 VSQG 168
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG
B3P; 2.60A {Homo sapiens}
Length = 304
Score = 149 bits (377), Expect = 3e-43
Identities = 63/283 (22%), Positives = 98/283 (34%), Gaps = 43/283 (15%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVIS 62
P+ I + Q G S C ATG+P P ++W G + RF ++ G V+
Sbjct: 7 PRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVL- 65
Query: 63 HVNISSVRV-EDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSG 121
I +R D +Y+C A N VG T A + V P + + V
Sbjct: 66 --RIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERT 123
Query: 122 DRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTC 181
A + C + G+P I+W K+ LP+ A R + +L I + G Y C
Sbjct: 124 RTATMLCAAS-GNPDPEITWFKDFLPVDPSASNG-RIKQLRSGALQIESSEETDQGKYEC 181
Query: 182 VASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPP 241
VA+N+ Y+ A+ V NV P
Sbjct: 182 VATNS---------------------------AGVRYSSPANLYV--------RVQNVAP 206
Query: 242 HI-GPFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQ 283
E+M G + CV G ++W + ++
Sbjct: 207 RFSILPMSHEIMPGGNVNITCVA-VGSPMPYVKWMQGAEDLTP 248
Score = 131 bits (330), Expect = 2e-36
Identities = 39/190 (20%), Positives = 73/190 (38%), Gaps = 17/190 (8%)
Query: 12 QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRV 71
+ ++ ++ C A+GNP P I+W D P+ G+ L + I S
Sbjct: 118 KVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSA-SNGRIKQLRSGALQ---IESSEE 173
Query: 72 EDSGIYQCTATNRVGS-QTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLV 130
D G Y+C ATN G + A++ V P+ + S ++ G + C+
Sbjct: 174 TDQGKYECVATNSAGVRYSSPANLYVRVQNVAPR----FSILPMSHEIMPGGNVNITCVA 229
Query: 131 TKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASD 190
G P + W++ + + ++ + + S NYTCVA +++
Sbjct: 230 V-GSPMPYVKWMQGAEDLTPEDDMPV-------GRNVLELTDVKDSANYTCVAMSSLGVI 281
Query: 191 NHSSNLRVNE 200
+ + V
Sbjct: 282 EAVAQITVKS 291
Score = 94.1 bits (234), Expect = 1e-22
Identities = 23/104 (22%), Positives = 39/104 (37%), Gaps = 12/104 (11%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPL-AGDRFVMGQYMSLHGDVI 61
P+ + + PG V++ C+A G+P P++ W L D +G+
Sbjct: 206 PRFSILPMSHEIMPGGNVNITCVAVGSPMPYVKWMQGAEDLTPEDDMPVGRN-------- 257
Query: 62 SHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQD 105
+ V+DS Y C A + +G A + V P
Sbjct: 258 ---VLELTDVKDSANYTCVAMSSLGVIEAVAQITVKSLPKAGTK 298
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation,
phosphorylation, disease MU neuronal development,
immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens}
PDB: 2v9q_A
Length = 212
Score = 146 bits (369), Expect = 3e-43
Identities = 54/207 (26%), Positives = 77/207 (37%), Gaps = 23/207 (11%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGD--- 59
P+++ + G P +L C A G PTP I W G + D+ + L
Sbjct: 10 PRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSL 69
Query: 60 VISHVNISSVRVEDSGIYQCTATNRVG-SQTHSADMRVYDAP----GQPQDVKLVTSNSR 114
+ D G+Y C A N +G + +H A + V P DV
Sbjct: 70 FFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDV-------- 121
Query: 115 SIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTG 174
V G+ A ++C +G P TISW K+G P+ E G L I
Sbjct: 122 --MVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIRGG----KLMITYTRKS 175
Query: 175 HSGNYTCVASNTVASDN-HSSNLRVNE 200
+G Y CV +N V + L V E
Sbjct: 176 DAGKYVCVGTNMVGERESEVAELTVLE 202
Score = 55.6 bits (134), Expect = 2e-09
Identities = 32/180 (17%), Positives = 57/180 (31%), Gaps = 37/180 (20%)
Query: 114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLST 173
+ V G+ A + C G P TI W K G + +D
Sbjct: 17 SDLIVSKGEPATLNCKAE-GRPTPTIEWYKGGERVETD--------------------KD 55
Query: 174 GHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTV-ASDNHS 232
+ + S ++ + + S G Y CVA N + + +H
Sbjct: 56 DPRSHRMLLPSGSL-------------FFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHD 102
Query: 233 SNLRVNV-PPHIG-PFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQPDISITL 290
++L V + + + G + C G ++ W K+G + D IT+
Sbjct: 103 ASLEVAILRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITI 162
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin
superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus
norvegicus}
Length = 403
Score = 150 bits (381), Expect = 5e-43
Identities = 68/294 (23%), Positives = 97/294 (32%), Gaps = 60/294 (20%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGN-PTPHISWKLDGYPLAGDRFVMGQYMSLHGDVI 61
+ + G V L C A + P I WK DG LA Q + +I
Sbjct: 22 LHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILALGMDDRKQQLPNGSLLI 81
Query: 62 SHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSG 121
++ S D G+YQC A+ S +V A G + S + SI G
Sbjct: 82 QNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVA-GPLR----FLSQTESITAFMG 136
Query: 122 DRAGVQCLVTKGDPPLTISWLKNGLPI---LSDAEITIRSSGEYTSSLSIATLSTGHSGN 178
D ++C V GDP TI W KN + D+ + + SG +L I+ L G SG
Sbjct: 137 DTVLLKCEVI-GDPMPTIHWQKNQQDLNPIPGDSRVVVLPSG----ALQISRLQPGDSGV 191
Query: 179 YTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVN 238
Y C A N ++ N +R+
Sbjct: 192 YRCSARNPASTR-------------------------------TGNEA-------EVRIL 213
Query: 239 VPPHI-GPFTFGE------LMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQPD 285
P + F + +EG + C V SG P S W + I
Sbjct: 214 SDPGLHRQLYFLQRPSNVIAIEGKDAVLECCV-SGYPPPSFTWLRGEEVIQLRS 266
Score = 148 bits (374), Expect = 5e-42
Identities = 66/278 (23%), Positives = 108/278 (38%), Gaps = 61/278 (21%)
Query: 12 QTLQPGPPVSLKCIATGNPTPHISWKLDGYPL----AGDRFVMGQYMSLHGDVISHVNIS 67
T G V LKC G+P P I W+ + L R V+ +L IS
Sbjct: 131 ITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGALQ--------IS 182
Query: 68 SVRVEDSGIYQCTATNRVGSQT-HSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGV 126
++ DSG+Y+C+A N ++T + A++R+ PG + + + S ++ G A +
Sbjct: 183 RLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPS-NVIAIEGKDAVL 241
Query: 127 QCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNT 186
+C V+ G PP + +WL+ I ++ G
Sbjct: 242 ECCVS-GYPPPSFTWLRGEEVIQLRSKKYSLLGG-------------------------- 274
Query: 187 VASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHI--G 244
S+L I+ ++ SG YTCV + + + S+ L V VPP
Sbjct: 275 ----------------SNLLISNVTDDDSGTYTCVVTYKNENISASAELTVLVPPWFLNH 318
Query: 245 PFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAIS 282
P E + + C V SG ++ W KNG +
Sbjct: 319 PSNL-YAYESMDIEFECAV-SGKPVPTVNWMKNGDVVI 354
Score = 145 bits (368), Expect = 4e-41
Identities = 43/203 (21%), Positives = 75/203 (36%), Gaps = 28/203 (13%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLA--GDRFVMGQYMSLHGDV 60
+ + G L+C +G P P +W + ++ + +L
Sbjct: 222 LYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGSNLL--- 278
Query: 61 ISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAP---GQPQDVKLVTSNSRSIK 117
IS+V +DSG Y C T + + + SA++ V P P ++
Sbjct: 279 -----ISNVTDDDSGTYTCVVTYKNENISASAELTVLVPPWFLNHPSNL----------Y 323
Query: 118 VHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSG 177
+ +C V+ G P T++W+KNG ++ I +L I + G
Sbjct: 324 AYESMDIEFECAVS-GKPVPTVNWMKNGDVVIPSDYFQIVGGS----NLRILGVVKSDEG 378
Query: 178 NYTCVASNTVASDNHSSNLRVNE 200
Y CVA N + S+ L V +
Sbjct: 379 FYQCVAENEAGNAQSSAQLIVPK 401
Score = 80.3 bits (198), Expect = 2e-17
Identities = 23/97 (23%), Positives = 35/97 (36%), Gaps = 9/97 (9%)
Query: 1 SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPL-AGDRFVMGQYMSLHGD 59
P + + +C +G P P ++W +G + D F + +L
Sbjct: 311 VPPWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIVGGSNLR-- 368
Query: 60 VISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRV 96
I V D G YQC A N G+ SA + V
Sbjct: 369 ------ILGVVKSDEGFYQCVAENEAGNAQSSAQLIV 399
Score = 36.7 bits (85), Expect = 0.007
Identities = 11/62 (17%), Positives = 23/62 (37%), Gaps = 1/62 (1%)
Query: 222 ASNTVASDNHSSNLRVNVPPHI-GPFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLA 280
+ + S +H + H + M G + C +S ++W K+GL
Sbjct: 3 WGSELESSHHHHHHGGRRSLHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLI 62
Query: 281 IS 282
++
Sbjct: 63 LA 64
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor,
tight junction formation, immunoglobulin superfamily,
immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1
b.1.1.4 PDB: 3eoy_G
Length = 209
Score = 145 bits (366), Expect = 7e-43
Identities = 42/198 (21%), Positives = 76/198 (38%), Gaps = 15/198 (7%)
Query: 11 QQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVN----I 66
+ + PV L C +G +P + WK D + + + D ++ +
Sbjct: 13 EVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITF 72
Query: 67 SSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGV 126
SV ED+G Y C + G+ +++ P + + G+RA +
Sbjct: 73 KSVTREDTGTYTCMVSEEGGNSYGEVKVKL-IVLVPPS----KPTVNIPSSATIGNRAVL 127
Query: 127 QCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGE------YTSSLSIATLSTGHSGNYT 180
C G PP +W K+G+ + ++ + T S T L LS +G Y+
Sbjct: 128 TCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYS 187
Query: 181 CVASNTVASDNHSSNLRV 198
C A N + S+ +R+
Sbjct: 188 CEARNGYGTPMTSNAVRM 205
Score = 79.6 bits (196), Expect = 6e-18
Identities = 27/178 (15%), Positives = 52/178 (29%), Gaps = 36/178 (20%)
Query: 109 VTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSI 168
V S+ +++ + + C + G + W + + + Y
Sbjct: 7 VHSSEPEVRIPENNPVKLSCAYS-GFSSPRVEWKFDQGDTTRLVCYNNKITASYED---- 61
Query: 169 ATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVAS 228
RV + ++ +++ +G YTC+ S +
Sbjct: 62 ----------------------------RVTFLPTGITFKSVTREDTGTYTCMVSEEGGN 93
Query: 229 DNHSSN--LRVNVPPHIGPFTF-GELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQ 283
L V VPP G R + C Q G P W+K+G+ +
Sbjct: 94 SYGEVKVKLIVLVPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPT 151
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB:
2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Length = 212
Score = 144 bits (365), Expect = 1e-42
Identities = 52/202 (25%), Positives = 82/202 (40%), Gaps = 8/202 (3%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVIS 62
P+ + QT G S C ATG+P P I W G ++ RF + + S
Sbjct: 7 PRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRF---EVIEFDDGSGS 63
Query: 63 HVNISSVRV-EDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSG 121
+ I +R D IY+C A+N VG + S + V P+ + + V
Sbjct: 64 VLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERT 123
Query: 122 DRAGVQCLVTKGDPPLTISWLKNGLPIL--SDAEITIRSSGEYTSSLSIATLSTGHSGNY 179
A + C + G+P I+W K+ LP+ ++ + E +L I G Y
Sbjct: 124 RTATMLCAAS-GNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKY 182
Query: 180 TCVASNTVASDNHSS-NLRVNE 200
CVA+N+ + + NL V
Sbjct: 183 ECVATNSAGTRYSAPANLYVRG 204
Score = 64.5 bits (157), Expect = 2e-12
Identities = 36/186 (19%), Positives = 50/186 (26%), Gaps = 48/186 (25%)
Query: 114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLST 173
SG A C T GDP I W K G + + I S L I L T
Sbjct: 14 VDQTGVSGGVASFICQAT-GDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRT 72
Query: 174 GHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSS 233
Y CVASN V + S+
Sbjct: 73 PR--------------------------------------DEAIYECVASNNVGEISVST 94
Query: 234 NLRVNVPPHIGP----FTFG----ELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQPD 285
L V I G + + C SG+ + W+K+ L + +
Sbjct: 95 RLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAA-SGNPDPEITWFKDFLPVDTSN 153
Query: 286 ISITLT 291
+ +
Sbjct: 154 NNGRIK 159
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor
protein tyrosine phosphatase; HET: NAG; 2.00A {Mus
musculus} PDB: 3jxa_A*
Length = 384
Score = 148 bits (376), Expect = 2e-42
Identities = 55/198 (27%), Positives = 78/198 (39%), Gaps = 23/198 (11%)
Query: 3 PQLIYKFIQ-QTLQPGPPVSLKCIATGNPTPHISW-KLDGYPLAGDRFVMGQYMSLHGDV 60
P++ +F + + G V L+C A GNP P I W + DG P+A L
Sbjct: 205 PKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNGILE--- 261
Query: 61 ISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHS 120
I + + ED+G Y+C A N G + Y P I V
Sbjct: 262 -----IPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQP-------NWVQIINDIHVAM 309
Query: 121 GDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYT 180
+ +C G P T WLKNG P+L+ I I +L+I ++ +G Y
Sbjct: 310 EESVFWECKAN-GRPKPTYRWLKNGDPLLTRDRIQIEQ-----GTLNITIVNLSDAGMYQ 363
Query: 181 CVASNTVASDNHSSNLRV 198
CVA N S+ L V
Sbjct: 364 CVAENKHGVIFSSAELSV 381
Score = 133 bits (336), Expect = 1e-36
Identities = 60/338 (17%), Positives = 96/338 (28%), Gaps = 81/338 (23%)
Query: 10 IQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSV 69
+ V L C GNP PHI WKL+G + M S+ S + +
Sbjct: 16 MFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDV---DIGMDFRYSVVDG--SLLINNPN 70
Query: 70 RVEDSGIYQCTATNRVGS-QTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQC 128
+ +D+G YQC ATN G+ + A ++ + ++ V G + C
Sbjct: 71 KTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTR------STVSVRRGQGMVLLC 124
Query: 129 LVTKGDPPLTISWLKNGLPILSDAE-ITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTV 187
L+ +W+ N P D + +G +L IA + GNYTCV +NTV
Sbjct: 125 GPPPHSGELSYAWIFNEYPSYQDNRRFVSQETG----NLYIAKVEKSDVGNYTCVVTNTV 180
Query: 188 ASDNHSSN---LRVNEYTSSLSIA-----------TLSTGHSGNYTCVAS---------- 223
+ L + G + C A
Sbjct: 181 TNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWR 240
Query: 224 --------------------------------------NTVASDNHSSNLRVNVPPHI-G 244
N+ + L P+
Sbjct: 241 RADGKPIARKARRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQPNWVQ 300
Query: 245 PFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAIS 282
+ C +G + +W KNG +
Sbjct: 301 IINDIHVAMEESVFWECKA-NGRPKPTYRWLKNGDPLL 337
Score = 56.0 bits (135), Expect = 4e-09
Identities = 32/190 (16%), Positives = 54/190 (28%), Gaps = 58/190 (30%)
Query: 102 QPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGE 161
+P V + +S + + C V KG+P I W NG +
Sbjct: 11 EPSHV-MFPLDSE------EKKVKLSCEV-KGNPKPHIRWKLNGTDV------------- 49
Query: 162 YTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLS-TGHSGNYTC 220
+ + R + SL I + T +G Y C
Sbjct: 50 -----------------------------DIGMDFRYSVVDGSLLINNPNKTQDAGTYQC 80
Query: 221 VASN---TVASDNHSSNLRVNVPPHI--GPFTFGELMEGVRTQVACVVQSGDLPLSLQWY 275
+A+N T+ S + L+ + + + G + C LS W
Sbjct: 81 IATNSFGTIVS--REAKLQFAYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWI 138
Query: 276 KNGLAISQPD 285
N Q +
Sbjct: 139 FNEYPSYQDN 148
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell
adhesion, immunoglobulin domain; 3.2A {Drosophila
melanogaster} PDB: 2vra_A*
Length = 217
Score = 144 bits (364), Expect = 2e-42
Identities = 49/204 (24%), Positives = 85/204 (41%), Gaps = 12/204 (5%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVIS 62
P++I ++ P +L C G P P I W DG P++ + + G +
Sbjct: 10 PRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFF 69
Query: 63 HVNISSVRVEDSGIYQCTATNRVGS-QTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSG 121
+ + + +D G Y C A NRVG + A +++ + +V G
Sbjct: 70 YRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLR------DDFRVEPKDTRVAKG 123
Query: 122 DRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTS----SLSIATLSTGHSG 177
+ A ++C KG P T+ W+K+G+P+ ++ +S +L I+ + G
Sbjct: 124 ETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEG 183
Query: 178 NYTCVASNTVASDNHSS-NLRVNE 200
NY C+A N V + S L V
Sbjct: 184 NYKCIAQNLVGTRESSYAKLIVQV 207
Score = 52.9 bits (127), Expect = 1e-08
Identities = 30/175 (17%), Positives = 56/175 (32%), Gaps = 40/175 (22%)
Query: 114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLST 173
+ V + A + C V G P TI W K+G P+ ++ + + R + +L
Sbjct: 17 TDLVVKKNEPATLNCKVE-GKPEPTIEWFKDGEPVSTNEKKSHRVQFK-DGALFF----- 69
Query: 174 GHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTV-ASDNHS 232
++ G Y CVA N V + +
Sbjct: 70 ------------------------------YRTMQGKKEQDGGEYWCVAKNRVGQAVSRH 99
Query: 233 SNLRVNV-PPHIG-PFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQPD 285
++L++ V + +G + C G +L W K+G+ +
Sbjct: 100 ASLQIAVLRDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLK 154
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A
{Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
b.1.1.4
Length = 395
Score = 148 bits (375), Expect = 3e-42
Identities = 49/199 (24%), Positives = 75/199 (37%), Gaps = 18/199 (9%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGD-RFVMGQYMSLHGDVI 61
P Y + G + C+ NP + ++ +G + G+ + ++ G +
Sbjct: 213 PVPQYVSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRL 272
Query: 62 SHVNISSVRVEDSGIYQCTATNRVGS-QTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHS 120
+ ED G+Y C N VG Q HS + V AP K + I V
Sbjct: 273 L---FKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAP------KYEQKPEKVIVVKQ 323
Query: 121 GDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYT 180
G + C VT G P + W N P+ S T+ SG L I + G G Y
Sbjct: 324 GQDVTIPCKVT-GLPAPNVVWSHNAKPL-SGGRATVTDSG-----LVIKGVKNGDKGYYG 376
Query: 181 CVASNTVASDNHSSNLRVN 199
C A+N + ++VN
Sbjct: 377 CRATNEHGDKYFETLVQVN 395
Score = 126 bits (318), Expect = 6e-34
Identities = 47/292 (16%), Positives = 75/292 (25%), Gaps = 56/292 (19%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTP-HISWKLDGYPL---AGDRFVMGQYMSLHG 58
P L + + + P L+CI GN SWK DG + + SL
Sbjct: 7 PVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLV- 65
Query: 59 DVISHVNISSVRVEDSGIYQCTATNRVGS-QTHSADMRVYDAPGQPQDVKLVTSNSRSIK 117
+ D G YQC A G + R P
Sbjct: 66 -------FLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIASPAKT-------HEKT 111
Query: 118 VHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITI---RSSGEYTSSLSIATLS-- 172
G + C++ P I+W K +A++T R + +L ++
Sbjct: 112 PIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKE 171
Query: 173 -TGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNH 231
Y C A N + V
Sbjct: 172 DVSDIYKYVCTAKNAA----------------------------VDEEVVLVEYEIKGVT 203
Query: 232 SSNLRVNVPPHIGPFTFGE-LMEGVRTQVACVVQSGDLPLSLQWYKNGLAIS 282
N P + G T + C+ + ++KNG ++
Sbjct: 204 KDNSGYKGEPVPQYVSKDMMAKAGDVTMIYCMY-GSNPMGYPNYFKNGKDVN 254
Score = 121 bits (305), Expect = 4e-32
Identities = 50/289 (17%), Positives = 82/289 (28%), Gaps = 51/289 (17%)
Query: 12 QTLQPGPPVSLKC-IATGNPTPHISWKLDGYPLAGDRFVMGQ---YMSLHGDVISHVNIS 67
+T G P L C + P P I+WK + V + + ++
Sbjct: 110 KTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVT 169
Query: 68 SVRVEDSGIYQCTATNRVGS-QTHSADMRVY---DAPGQPQDVKLVTSNSRSIKVHSGDR 123
V D Y CTA N + + + + + S+ + +GD
Sbjct: 170 KEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDV 229
Query: 124 AGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVA 183
+ C+ +P ++ KNG + + E I
Sbjct: 230 TMIYCMYG-SNPMGYPNYFKNGKDVNGNPEDRITR------------------------- 263
Query: 184 SNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDN-HSSNLRVNVPPH 242
L T G YTC N V HS L V P
Sbjct: 264 -------------HNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPK 310
Query: 243 I--GPFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQPDISIT 289
P + +G + C V +G ++ W N +S ++T
Sbjct: 311 YEQKPEKVIVVKQGQDVTIPCKV-TGLPAPNVVWSHNAKPLSGGRATVT 358
Score = 29.1 bits (65), Expect = 1.7
Identities = 10/52 (19%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Query: 235 LRVNVPPHI-GPFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQPD 285
L V+ P + E T + C+++ D + W K+G + + +
Sbjct: 1 LPVDKYPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQE 52
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein,
serine/threonine-protein KI LIMB-girdle muscular
dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB:
2j8o_A 2ill_A
Length = 197
Score = 142 bits (361), Expect = 3e-42
Identities = 40/200 (20%), Positives = 79/200 (39%), Gaps = 9/200 (4%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVIS 62
P + ++ +L C TG+P P + W G + D + +
Sbjct: 5 PHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADG--LKYRIQEFKGGYH 62
Query: 63 HVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPG--QPQDVKLVTSNSRSIKVHS 120
+ I+SV +D+ +YQ ATN+ GS + +A + V P+ ++ + ++
Sbjct: 63 QLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGM----GAVHALR 118
Query: 121 GDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYT 180
G+ ++ + G P I+W K I ++ + + +TS + + +G Y
Sbjct: 119 GEVVSIKIPFS-GKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYV 177
Query: 181 CVASNTVASDNHSSNLRVNE 200
A N D + L V +
Sbjct: 178 VCAKNRFGIDQKTVELDVAD 197
Score = 69.7 bits (171), Expect = 2e-14
Identities = 33/184 (17%), Positives = 51/184 (27%), Gaps = 49/184 (26%)
Query: 114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAE-ITIRSSGEYTSSLSIATLS 172
R++ V A + C VT G P + W + G I++D I+ L I
Sbjct: 12 RNLNVRYQSNATLVCKVT-GHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLII---- 66
Query: 173 TGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHS 232
++ D + Y A+N S + +
Sbjct: 67 -----------ASVTDDD------------------------ATVYQVRATNQGGSVSGT 91
Query: 233 SNLRVNVPPHIGPFTFGELMEGVRTQV------ACVVQSGDLPLSLQWYKNGLAISQ-PD 285
++L V VP I E M V SG + W K I
Sbjct: 92 ASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPF-SGKPDPVITWQKGQDLIDNNGH 150
Query: 286 ISIT 289
+
Sbjct: 151 YQVI 154
>2y25_A Myomesin; structural protein, sarcomere, M-BAND,
immunoglobulin-like D; 3.50A {Homo sapiens}
Length = 317
Score = 145 bits (368), Expect = 6e-42
Identities = 47/283 (16%), Positives = 86/283 (30%), Gaps = 32/283 (11%)
Query: 6 IYKFIQQTLQPGPPVSLKCIATG-NPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHV 64
+++ + V LKC HI W D ++ D ++ G I +
Sbjct: 10 FVEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVD----EKHDFKDG--ICTL 63
Query: 65 NISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAP---GQPQDVKLVTSNSRSIKVHSG 121
I+ +D+GIY+ + G + + +++ I+ +
Sbjct: 64 LITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALSATDLKIQS-TA 122
Query: 122 DRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTC 181
+ + VT L ++W NG I + +GE L I + G Y
Sbjct: 123 EGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGE-QIWLQINEPTPNDKGKYVM 181
Query: 182 VASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPP 241
+ + +L Y A ++ N
Sbjct: 182 ELFDGKTGHQKTVDLSGQAYDE------------------AYAEFQRLKQAAIAEKNRAR 223
Query: 242 HIGPF-TFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQ 283
+G + EG + C V GD P + W KN A++
Sbjct: 224 VLGGLPDVVTIQEGKALNLTCNV-WGDPPPEVSWLKNEKALAS 265
Score = 137 bits (346), Expect = 9e-39
Identities = 41/225 (18%), Positives = 76/225 (33%), Gaps = 31/225 (13%)
Query: 1 SHPQLIYKFIQQTLQPGPPVSLKCIATG----------NPTPHISWKLDGYPL-AGDRFV 49
+ +L+ + ++ + ++ A G ++W +G + DR
Sbjct: 97 AFKELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVK 156
Query: 50 MGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVY------------ 97
G G+ I + I+ D G Y + + D+
Sbjct: 157 TGV----TGEQIW-LQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRL 211
Query: 98 --DAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEIT 155
A + +++ + + G + C V GDPP +SWLKN + SD
Sbjct: 212 KQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVW-GDPPPEVSWLKNEKALASDDHCN 270
Query: 156 IRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNE 200
++ T+ +I +ST SG Y V N S+ + V
Sbjct: 271 LKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFI 315
Score = 73.8 bits (181), Expect = 3e-15
Identities = 26/190 (13%), Positives = 43/190 (22%), Gaps = 57/190 (30%)
Query: 115 SIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTG 174
S +V ++C V I W K+ I D + +
Sbjct: 15 SWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGI-------------- 60
Query: 175 HSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSN 234
+L I S +G Y + + D
Sbjct: 61 ----------------------------CTLLITEFSKKDAGIYEVILKDDRGKDKSRLK 92
Query: 235 LRVNVPPHI------------GPFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAIS 282
L + EG++ + V L + W NG AI
Sbjct: 93 LVDEAFKELMMEVCKKIALSATDLKIQSTAEGIQ--LYSFVTYYVEDLKVNWSHNGSAIR 150
Query: 283 Q-PDISITLT 291
+ +T
Sbjct: 151 YSDRVKTGVT 160
>1f97_A Junction adhesion molecule; immunoglobulin superfamily,
beta-sandwich fold, cell adhesion; 2.50A {Mus musculus}
SCOP: b.1.1.1 b.1.1.4
Length = 212
Score = 142 bits (360), Expect = 7e-42
Identities = 41/201 (20%), Positives = 69/201 (34%), Gaps = 20/201 (9%)
Query: 12 QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVN----IS 67
+ + L C +G +P + WK Q + + D ++ + S
Sbjct: 11 VQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFS 70
Query: 68 SVRVEDSGIYQCTATNRVGSQTHSADMR--VYDAPGQPQDVKLVTSNSRSIKVHSGDRAG 125
SV +D+G Y C + G + V P + S V G+RA
Sbjct: 71 SVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPP-------SKPTISVPSSVTIGNRAV 123
Query: 126 VQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSG-------EYTSSLSIATLSTGHSGN 178
+ C G PP SW K+G+ +L+ R+ + L ++ SG
Sbjct: 124 LTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGE 183
Query: 179 YTCVASNTVASDNHSSNLRVN 199
Y C A N + S ++
Sbjct: 184 YYCQAQNGYGTAMRSEAAHMD 204
Score = 73.8 bits (181), Expect = 6e-16
Identities = 28/180 (15%), Positives = 57/180 (31%), Gaps = 36/180 (20%)
Query: 109 VTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSI 168
V + ++V + + C + G + W + + + Y
Sbjct: 4 VYTAQSDVQVPENESIKLTCTYS-GFSSPRVEWKFVQGSTTALVCYNSQITAPYAD---- 58
Query: 169 ATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVAS 228
RV +S ++ ++++ +G YTC+ S
Sbjct: 59 ----------------------------RVTFSSSGITFSSVTRKDNGEYTCMVSEEGGQ 90
Query: 229 DNHSS--NLRVNVPPHIGPFTF-GELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQPD 285
+ +L V VPP + + G R + C G P W+K+G+++ D
Sbjct: 91 NYGEVSIHLTVLVPPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTAD 150
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila
melanogaster} PDB: 3pxj_A
Length = 212
Score = 139 bits (353), Expect = 7e-41
Identities = 51/201 (25%), Positives = 84/201 (41%), Gaps = 10/201 (4%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVIS 62
P++I K Q ++ G S C A G+P P I W+ +G ++G + + IS
Sbjct: 7 PEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRY--TVLEQPGGIS 64
Query: 63 HVNISSVRV-EDSGIYQCTATNRVG-SQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHS 120
+ I VR D Y+C A N VG + + A + +Y+ P ++T + +
Sbjct: 65 ILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEV 124
Query: 121 GDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYT 180
G + C G+P I W+KN + G L I G Y
Sbjct: 125 GHTVLMTCKAI-GNPTPNIYWIKNQTKVDMSNPRYSLKDG----FLQIENSREEDQGKYE 179
Query: 181 CVASNTVASDN-HSSNLRVNE 200
CVA N++ +++ ++NL V
Sbjct: 180 CVAENSMGTEHSKATNLYVKV 200
Score = 53.6 bits (129), Expect = 1e-08
Identities = 32/180 (17%), Positives = 52/180 (28%), Gaps = 50/180 (27%)
Query: 114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPI-LSDAEITIRSSGEYTSSLSIATLS 172
++ V G A C GDPP +I W KNG + + + T+ +SI
Sbjct: 14 QNQGVRVGGVASFYCAAR-GDPPPSIVWRKNGKKVSGTQSRYTVLEQP---GGISI---- 65
Query: 173 TGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTV-ASDNH 231
LR+ + Y CVA N V + +
Sbjct: 66 -----------------------LRIEPVRAG--------RDDAPYECVAENGVGDAVSA 94
Query: 232 SSNLRVNVPPHI--GPFTFGELMEGVRTQV------ACVVQSGDLPLSLQWYKNGLAISQ 283
+ L + G + +V C G+ ++ W KN +
Sbjct: 95 DATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKA-IGNPTPNIYWIKNQTKVDM 153
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Length = 305
Score = 142 bits (360), Expect = 8e-41
Identities = 42/199 (21%), Positives = 75/199 (37%), Gaps = 7/199 (3%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVIS 62
P + ++ +L C TG+P P + W G + D +Y
Sbjct: 5 PHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADG---LKYRIQEFKGGY 61
Query: 63 HV-NISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSG 121
H I+SV +D+ +YQ ATN+ GS + +A + V L ++ G
Sbjct: 62 HQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTL--EGMGAVHALRG 119
Query: 122 DRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTC 181
+ ++ + G P I+W K I ++ + + +TS + + +G Y
Sbjct: 120 EVVSIKIPFS-GKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVV 178
Query: 182 VASNTVASDNHSSNLRVNE 200
A N D + L V +
Sbjct: 179 CAKNRFGIDQKTVELDVAD 197
Score = 97.9 bits (244), Expect = 5e-24
Identities = 27/118 (22%), Positives = 47/118 (39%), Gaps = 5/118 (4%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPL-AGDRFVMGQYMSLHGDVI 61
P+ + G VS+K +G P P I+W+ + + +
Sbjct: 105 PKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVT----RSFT 160
Query: 62 SHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVH 119
S V + V +D+G Y A NR G + ++ V D P P+ VK+ + S+ +
Sbjct: 161 SLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVADVPDPPRGVKVSDVSRDSVNLT 218
Score = 74.8 bits (184), Expect = 9e-16
Identities = 28/170 (16%), Positives = 53/170 (31%), Gaps = 36/170 (21%)
Query: 114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPIL-SDAEITIRSSGEYTSSLSIATLS 172
R++ V A + C VT G P + W + G I+ + I+ L IA+++
Sbjct: 12 RNLNVRYQSNATLVCKVT-GHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVT 70
Query: 173 TGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHS 232
+ Y A+N S + +++L V
Sbjct: 71 DDDATVYQVRATNQGGSVSGTASLEVEVPA------------------------------ 100
Query: 233 SNLRVNVPPHIGPFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAIS 282
++++P + + G + SG + W K I
Sbjct: 101 ---KIHLPKTLEGMGAVHALRGEVVSIKIPF-SGKPDPVITWQKGQDLID 146
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein
complex, receptor tyrosine kinas binding, immunoglobulin
domain, kinase, membrane, nucleotid binding; HET: NAG;
2.10A {Homo sapiens}
Length = 241
Score = 140 bits (354), Expect = 1e-40
Identities = 49/200 (24%), Positives = 72/200 (36%), Gaps = 17/200 (8%)
Query: 12 QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRV 71
+ V +C A GNPTP ISW +G G+ + G + + + SV
Sbjct: 25 LAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLV---MESVVP 81
Query: 72 EDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVT 131
D G Y C N+ GS + + V + P L + G C V
Sbjct: 82 SDRGNYTCVVENKFGSIRQTYTLDVLERS--PHRPILQAGLPANQTAVLGSDVEFHCKVY 139
Query: 132 KGDPPLTISWLK-----------NGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYT 180
D I WLK +G P ++ + I S E L +A +S G Y
Sbjct: 140 -SDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYL 198
Query: 181 CVASNTVASDNHSSNLRVNE 200
C A+N + + L V+
Sbjct: 199 CRATNFIGVAEKAFWLSVHG 218
Score = 90.4 bits (224), Expect = 1e-21
Identities = 23/112 (20%), Positives = 42/112 (37%), Gaps = 8/112 (7%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWK----LDGYPLAGD----RFVMGQYM 54
QT G V C + PHI W ++G + D V+ ++
Sbjct: 115 ILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWI 174
Query: 55 SLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDV 106
S + + +++V D G Y C ATN +G + + V+ +++
Sbjct: 175 SESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHGPRAAEEEL 226
Score = 82.3 bits (203), Expect = 9e-19
Identities = 32/141 (22%), Positives = 48/141 (34%), Gaps = 11/141 (7%)
Query: 91 SADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILS 150
D V P + + + + V + + +C G+P +ISWLKNG
Sbjct: 2 DPDTGVDTGA--PYWTRPERMDKKLLAVPAANTVRFRCPAA-GNPTPSISWLKNGREFRG 58
Query: 151 DAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIA-- 208
+ I SL + ++ GNYTCV N S + L V E + I
Sbjct: 59 EHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQA 118
Query: 209 ------TLSTGHSGNYTCVAS 223
T G + C
Sbjct: 119 GLPANQTAVLGSDVEFHCKVY 139
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif,
immunoglobulin-like domain, growth facto factor
receptor, extracellular; 2.10A {Homo sapiens} PDB:
1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E
1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Length = 231
Score = 139 bits (352), Expect = 2e-40
Identities = 40/199 (20%), Positives = 63/199 (31%), Gaps = 16/199 (8%)
Query: 12 QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRV 71
+ V +C A GNP P + W +G + + G + + + SV
Sbjct: 29 HAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLI---MESVVP 85
Query: 72 EDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVT 131
D G Y C N GS H+ + V + L + G C V
Sbjct: 86 SDKGNYTCVVENEYGSINHTYHLDVVERSRHRPI--LQAGLPANASTVVGGDVEFVCKVY 143
Query: 132 KGDPPLTISWLKNGLPILSDAEI----------TIRSSGEYTSSLSIATLSTGHSGNYTC 181
D I W+K+ S + L++ ++ +G Y C
Sbjct: 144 -SDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYIC 202
Query: 182 VASNTVASDNHSSNLRVNE 200
SN + N S+ L V
Sbjct: 203 KVSNYIGQANQSAWLTVLP 221
Score = 83.4 bits (206), Expect = 3e-19
Identities = 19/103 (18%), Positives = 33/103 (32%), Gaps = 7/103 (6%)
Query: 12 QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGD-------RFVMGQYMSLHGDVISHV 64
+ G V C + PHI W + ++ ++ +
Sbjct: 128 ASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVL 187
Query: 65 NISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVK 107
+ +V D+G Y C +N +G SA + V P K
Sbjct: 188 ALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQQAPGREK 230
Score = 82.3 bits (203), Expect = 8e-19
Identities = 41/204 (20%), Positives = 59/204 (28%), Gaps = 55/204 (26%)
Query: 81 ATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTIS 140
A + V +++ P R V + + +C G+P T+
Sbjct: 2 AEDFVSENSNNK--------RAPYWTNTEKMEKRLHAVPAANTVKFRCPAG-GNPMPTMR 52
Query: 141 WLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNE 200
WLKNG + I SL + + V SD
Sbjct: 53 WLKNGKEFKQEHRIGGYKVRNQHWSLIM---------------ESVVPSD---------- 87
Query: 201 YTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGPFTFGEL------MEG 254
GNYTCV N S NH+ +L V P L + G
Sbjct: 88 --------------KGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVG 133
Query: 255 VRTQVACVVQSGDLPLSLQWYKNG 278
+ C V D +QW K+
Sbjct: 134 GDVEFVCKV-YSDAQPHIQWIKHV 156
Score = 29.1 bits (65), Expect = 1.3
Identities = 17/68 (25%), Positives = 24/68 (35%), Gaps = 12/68 (17%)
Query: 226 VASDNHSSNLRVNVPPHIGPFTFGELMEGVRTQVA--------CVVQSGDLPLSLQWYKN 277
+A D S N P+ +T E ME V C G+ +++W KN
Sbjct: 1 MAEDFVSENSNNKRAPY---WTNTEKMEKRLHAVPAANTVKFRCPA-GGNPMPTMRWLKN 56
Query: 278 GLAISQPD 285
G Q
Sbjct: 57 GKEFKQEH 64
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling
protein,transferase; 2.21A {Rattus norvegicus}
Length = 192
Score = 137 bits (347), Expect = 4e-40
Identities = 48/200 (24%), Positives = 80/200 (40%), Gaps = 23/200 (11%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPL--AGDRFVMGQYMSLHGDV 60
P + + C P P ISW + + R+ + +G +
Sbjct: 8 PVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYS----IRENGQL 63
Query: 61 ISHVNISSVRVEDSGIYQCTATNRVG-SQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVH 119
++ I SV D GIY CTA N VG + ++V P +T ++K+
Sbjct: 64 LT---ILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKP-------KITRPPINVKII 113
Query: 120 SGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNY 179
G +A + C G+P ++SW+K + ++ I + SG SL I + +G Y
Sbjct: 114 EGLKAVLPCTTM-GNPKPSVSWIKGDSALRENSRIAVLESG----SLRIHNVQKEDAGQY 168
Query: 180 TCVASNTVASDN-HSSNLRV 198
CVA N++ + L V
Sbjct: 169 RCVAKNSLGTAYSKLVKLEV 188
Score = 65.1 bits (159), Expect = 6e-13
Identities = 35/173 (20%), Positives = 59/173 (34%), Gaps = 47/173 (27%)
Query: 114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPI-LSDAEITIRSSGEYTSSLSIATLS 172
++ + A C V P ISW +N + I L D +IR +G
Sbjct: 15 ETVDALVEEVATFMCAVE-SYPQPEISWTRNKILIKLFDTRYSIRENG------------ 61
Query: 173 TGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTV-ASDNH 231
L+I ++ G Y C A+N V +
Sbjct: 62 ------------------------------QLLTILSVEDSDDGIYCCTANNGVGGAVES 91
Query: 232 SSNLRVNVPPHI-GPFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQ 283
L+V + P I P +++EG++ + C G+ S+ W K A+ +
Sbjct: 92 CGALQVKMKPKITRPPINVKIIEGLKAVLPCTT-MGNPKPSVSWIKGDSALRE 143
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, IG, membrane, homphilic,
glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB:
2xy2_A* 2vaj_A
Length = 189
Score = 137 bits (346), Expect = 5e-40
Identities = 41/203 (20%), Positives = 72/203 (35%), Gaps = 27/203 (13%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPL-AGDRFVMGQYMSLHGDVI 61
Q+ + L G C A G P + G + + R V+ V
Sbjct: 3 LQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVV-----QKEGVR 57
Query: 62 SHVNISSVRVEDSGIYQCTATNRVGS-QTHSADMRVYDAPG---QPQDVKLVTSNSRSIK 117
S + I + +ED+GIY+C AT+ G Q + + +Y +
Sbjct: 58 SRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQ----------E 107
Query: 118 VHSGDRAGVQCLVTKGDPPLTISWLKNGLPI--LSDAEITIRSSGEYTSSLSIATLSTGH 175
G+ A V C V+ P +SWL + + +SD + ++ +L I ++
Sbjct: 108 FKQGEDAEVVCRVS-SSPAPAVSWLYHNEEVTTISDNRFAMLANN----NLQILNINKSD 162
Query: 176 SGNYTCVASNTVASDNHSSNLRV 198
G Y C + ++ V
Sbjct: 163 EGIYRCEGRVEARGEIDFRDIIV 185
Score = 73.3 bits (180), Expect = 6e-16
Identities = 25/179 (13%), Positives = 52/179 (29%), Gaps = 44/179 (24%)
Query: 109 VTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSI 168
VT + +++ G+ C G+P + G I+S + ++ G
Sbjct: 5 VTISLSKVELSVGESKFFTCTAI-GEPESIDWYNPQGEKIISTQRVVVQKEGV------- 56
Query: 169 ATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVAS 228
S L+I + +G Y C A++
Sbjct: 57 ---------------------------------RSRLTIYNANIEDAGIYRCQATDAKGQ 83
Query: 229 DNHSS-NLRVNVPPHIG-PFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQPD 285
++ L + + E +G +V C V S ++ W + ++
Sbjct: 84 TQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRV-SSSPAPAVSWLYHNEEVTTIS 141
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta
trefoil, IG domain, growth factor/growth factor receptor
complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 334
Score = 141 bits (356), Expect = 5e-40
Identities = 49/201 (24%), Positives = 76/201 (37%), Gaps = 18/201 (8%)
Query: 12 QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRV 71
+ V +C A GNPTP ISW +G G+ + G + + + SV
Sbjct: 133 LAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLV---MESVVP 189
Query: 72 EDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVT 131
D G Y C N+ GS + + V + P L + G C V
Sbjct: 190 SDRGNYTCVVENKFGSIRQTYTLDVLERS--PHRPILQAGLPANQTAVLGSDVEFHCKVY 247
Query: 132 KGDPPLTISWLK----NGLPILSDAEITI--------RSSGEYTSSLSIATLSTGHSGNY 179
D I WLK NG + D + ++ + LS+ ++ +G Y
Sbjct: 248 -SDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEY 306
Query: 180 TCVASNTVASDNHSSNLRVNE 200
TC+A N++ +HS+ L V
Sbjct: 307 TCLAGNSIGFSHHSAWLVVLP 327
Score = 136 bits (343), Expect = 5e-38
Identities = 52/249 (20%), Positives = 73/249 (29%), Gaps = 37/249 (14%)
Query: 3 PQLIYKFIQQ-TLQPGPPVSLKCIAT-GNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDV 60
P +Q G V L C G P W DG L V+ L
Sbjct: 8 PGPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLVGPQRLQ--- 64
Query: 61 ISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAP------------------GQ 102
+ + EDSG Y C H + G
Sbjct: 65 -----VLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGA 119
Query: 103 PQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEY 162
P + + + + V + + +C G+P +ISWLKNG + I
Sbjct: 120 PYWTRPERMDKKLLAVPAANTVRFRCPAA-GNPTPSISWLKNGREFRGEHRIGGIKLRHQ 178
Query: 163 TSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSI--------ATLSTGH 214
SL + ++ GNYTCV N S + L V E + I T G
Sbjct: 179 QWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGS 238
Query: 215 SGNYTCVAS 223
+ C
Sbjct: 239 DVEFHCKVY 247
Score = 79.7 bits (196), Expect = 3e-17
Identities = 26/107 (24%), Positives = 37/107 (34%), Gaps = 9/107 (8%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWK----LDGYPLAGDRFVMGQYMSLHG 58
QT G V C + PHI W ++G + D + G
Sbjct: 223 ILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAG 282
Query: 59 DVISHVN-----ISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAP 100
+ + +V ED+G Y C A N +G HSA + V A
Sbjct: 283 ANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVVLPAE 329
Score = 58.1 bits (140), Expect = 6e-10
Identities = 33/217 (15%), Positives = 50/217 (23%), Gaps = 77/217 (35%)
Query: 95 RVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEI 154
R + P + SGD + C G P W+K+G ++ +
Sbjct: 3 RAAEVP------GPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERV 56
Query: 155 TIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGH 214
+ L + N D
Sbjct: 57 LVG-----PQRLQV---------------LNASHED------------------------ 72
Query: 215 SGNYTCVASNTVASDNHSSNLRVNVPPHIGP------------------FTFGELMEGVR 256
SG Y+C T H S + P +T E M+
Sbjct: 73 SGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKL 132
Query: 257 TQVA--------CVVQSGDLPLSLQWYKNGLAISQPD 285
V C +G+ S+ W KNG
Sbjct: 133 LAVPAANTVRFRCPA-AGNPTPSISWLKNGREFRGEH 168
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus
gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB:
2om5_A
Length = 382
Score = 141 bits (357), Expect = 1e-39
Identities = 48/197 (24%), Positives = 71/197 (36%), Gaps = 24/197 (12%)
Query: 3 PQLIYKFIQ-QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVI 61
P + KF G V+L+C A GNP P I W+
Sbjct: 207 PSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKWLSSE---------- 256
Query: 62 SHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSG 121
++I +V ED G Y+C A N G T+ + ++ P + G
Sbjct: 257 PLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHAQPD-------WLDVITDTEADIG 309
Query: 122 DRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTC 181
C+ + G P + WL++G P+ S I + L + L SG Y C
Sbjct: 310 SDLRWSCVAS-GKPRPAVRWLRDGQPLASQNRIEVSG-----GELRFSKLVLEDSGMYQC 363
Query: 182 VASNTVASDNHSSNLRV 198
VA N + S+ L V
Sbjct: 364 VAENKHGTVYASAELTV 380
Score = 130 bits (329), Expect = 1e-35
Identities = 60/338 (17%), Positives = 102/338 (30%), Gaps = 81/338 (23%)
Query: 10 IQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSV 69
+ V+L C A NP WK++G L + L V + V
Sbjct: 15 LFPEGSAEEKVTLTCRARANPPATYRWKMNGTEL---KMGPDSRYRLVAG--DLVISNPV 69
Query: 70 RVEDSGIYQCTATNRVGS-QTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQC 128
+ +D+G YQC ATN G+ + A +R + +K+ G C
Sbjct: 70 KAKDAGSYQCVATNARGTVVSREASLRFGFLQ------EFSAEERDPVKITEGWGVMFTC 123
Query: 129 LVTKGDPPLTISWLKNGLPIL---SDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASN 185
P L+ WL N P +++G +L IA GNY+C A++
Sbjct: 124 SPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTG----NLYIAKTEASDLGNYSCFATS 179
Query: 186 TVASDNHSSNLRVNEYTSSLSIA---------------TLSTGHSGNYTCVAS------- 223
+ S + ++ + + A TG C A
Sbjct: 180 HIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQI 239
Query: 224 --------------------------------------NTVASDNHSSNLRVNVPPHI-G 244
N D + + ++ P
Sbjct: 240 KWRKLDGSQTSKWLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHAQPDWLD 299
Query: 245 PFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAIS 282
T E G + +CV SG +++W ++G ++
Sbjct: 300 VITDTEADIGSDLRWSCVA-SGKPRPAVRWLRDGQPLA 336
Score = 53.7 bits (129), Expect = 2e-08
Identities = 30/183 (16%), Positives = 49/183 (26%), Gaps = 58/183 (31%)
Query: 102 QPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGE 161
QP + + ++ + C + +PP T W NG +
Sbjct: 10 QPAHTLFP-------EGSAEEKVTLTCRA-RANPPATYRWKMNGTEL------------- 48
Query: 162 YTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIAT-LSTGHSGNYTC 220
+ R L I+ + +G+Y C
Sbjct: 49 -----------------------------KMGPDSRYRLVAGDLVISNPVKAKDAGSYQC 79
Query: 221 VASN---TVASDNHSSNLRVNVPPHI--GPFTFGELMEGVRTQVACVVQSGDLPLSLQWY 275
VA+N TV S ++LR ++ EG C LS +W
Sbjct: 80 VATNARGTVVS--REASLRFGFLQEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWL 137
Query: 276 KNG 278
N
Sbjct: 138 LNE 140
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane,
phosphorylation, immunoglobulin domain, membrane,
glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB: 2xy1_A*
Length = 192
Score = 136 bits (344), Expect = 1e-39
Identities = 40/195 (20%), Positives = 72/195 (36%), Gaps = 25/195 (12%)
Query: 12 QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRV 71
T + G ++ C A+G+P P ISW +G + + + + + ++
Sbjct: 14 ATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKY---ILKGSNTEL---TVRNIIN 67
Query: 72 EDSGIYQCTATNRVGSQTHSADMRVYDAPG--QPQDVKLVTSNSRSIKVHSGDRAGVQCL 129
D G Y C ATN+ G A ++V+ P Q ++ + + + C
Sbjct: 68 SDGGPYVCRATNKAGEDEKQAFLQVFVQPHIIQLKNE----------TTYENGQVTLVCD 117
Query: 130 VTKGDPPLTISWLKN--GLPILSDAEITIR----SSGEYTSSLSIATLSTGHSGNYTCVA 183
G+P I+W + G + +SSL I + SG Y C A
Sbjct: 118 AE-GEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEA 176
Query: 184 SNTVASDNHSSNLRV 198
++ + S L +
Sbjct: 177 ASRIGGHQKSMYLDI 191
Score = 88.3 bits (219), Expect = 2e-21
Identities = 31/97 (31%), Positives = 49/97 (50%), Gaps = 4/97 (4%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWK--LDGYPLA-GDRFVMGQYMSLHGD 59
P +I + T + G V+L C A G P P I+WK +DG+ GD+ + G+
Sbjct: 96 PHIIQLKNETTYENGQ-VTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQH 154
Query: 60 VISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRV 96
S ++I V++ DSG Y C A +R+G S + +
Sbjct: 155 GSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDI 191
Score = 74.8 bits (184), Expect = 2e-16
Identities = 29/170 (17%), Positives = 50/170 (29%), Gaps = 44/170 (25%)
Query: 109 VTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSI 168
+ S + G+ C + G P ISW +NG I + + ++ S
Sbjct: 7 MPQKSFNATAERGEEMTFSCRAS-GSPEPAISWFRNGKLIEENEKYILKGSN-------- 57
Query: 169 ATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVAS 228
+ L++ + G Y C A+N
Sbjct: 58 ----------------------------------TELTVRNIINSDGGPYVCRATNKAGE 83
Query: 229 DNHSSNLRVNVPPHIGPFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNG 278
D + L+V V PHI E + + C G+ + W +
Sbjct: 84 DEKQAFLQVFVQPHIIQLKNETTYENGQVTLVCDA-EGEPIPEITWKRAV 132
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, hematopoietic cytokine-receptor
complex, cell surface, EXTR complex; 7.80A {Homo
sapiens}
Length = 527
Score = 143 bits (361), Expect = 2e-39
Identities = 48/284 (16%), Positives = 82/284 (28%), Gaps = 64/284 (22%)
Query: 11 QQTLQPGPPVSLKCIATG-NPTPHISWKLDGYPL-AGDRFVMGQYMSLHGDV-ISHVNIS 67
Q L+ G P+ ++C A N ++W+L+ L G+ F M Y + + I +S
Sbjct: 236 QLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVS 295
Query: 68 SVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQ 127
SV D+G Y C+++ SA + + + T++S ++ +
Sbjct: 296 SVARNDTGYYTCSSSKHPSQ---SALVTIVEKG-----FINATNSSEDYEIDQYEEFCFS 347
Query: 128 CLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTV 187
K P + +W +
Sbjct: 348 VRF-KAYPQIRCTWTFSRKSF--------------------------------------- 367
Query: 188 ASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGPFT 247
+ + S+S G Y A N A L + P +
Sbjct: 368 -----PCEQKGLDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRRKPQV---- 418
Query: 248 FGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQPDISITLT 291
L E +Q +C G S W K IT
Sbjct: 419 ---LAEASASQASCFS-DGYPLPSWTWKKCSDKSPNCTEEITEG 458
Score = 126 bits (318), Expect = 3e-33
Identities = 26/284 (9%), Positives = 62/284 (21%), Gaps = 58/284 (20%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVIS 62
+Y+ + ++L+ + W L L +
Sbjct: 49 SGTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHF-----DLQNRGVV 103
Query: 63 HVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGD 122
+ I + +G Y + + T + + + + + R +
Sbjct: 104 SMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTL--------LYTLRRPYFRKMEN 155
Query: 123 RAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCV 182
+ + C+ P + W+ + + L + C
Sbjct: 156 QDALVCISE-SVPEPIVEWVLCDSQGE-----SCKEESPAVVKKEEKVLHELFGTDIRCC 209
Query: 183 ASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPH 242
A N + + L + +N P
Sbjct: 210 ARN-----------ELGRECTRLFT---------------------------IDLNQTPQ 231
Query: 243 IGPFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQPDI 286
L G + C + L W A+ + +
Sbjct: 232 TTLPQL-FLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNY 274
Score = 117 bits (295), Expect = 4e-30
Identities = 28/267 (10%), Positives = 67/267 (25%), Gaps = 59/267 (22%)
Query: 20 VSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQC 79
+L CI+ P P + W L G+ + + +C
Sbjct: 157 DALVCISESVPEPIVEWVLCDSQ--------GESCKEESPAVVKKEEKVLHELFGTDIRC 208
Query: 80 TATNRVG-SQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLT 138
A N +G T + + P + + G+ ++C +
Sbjct: 209 CARNELGRECTRLFTIDLNQTPQTT---------LPQLFLKVGEPLWIRCKAVHVNHGFG 259
Query: 139 ISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRV 198
++W + + + S R
Sbjct: 260 LTWELENKALEEGNYFEMSTY----------------------------------STNRT 285
Query: 199 NEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGPFTFG---ELMEGV 255
+++++ +G YTC +S + S+ + + I E+ +
Sbjct: 286 MIRILFAFVSSVARNDTGYYTCSSSKHP---SQSALVTIVEKGFINATNSSEDYEIDQYE 342
Query: 256 RTQVACVVQSGDLPLSLQWYKNGLAIS 282
+ + + W + +
Sbjct: 343 EFCFSVRFK-AYPQIRCTWTFSRKSFP 368
Score = 111 bits (278), Expect = 7e-28
Identities = 22/199 (11%), Positives = 45/199 (22%), Gaps = 34/199 (17%)
Query: 12 QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRV 71
+ P +W ++ + S+
Sbjct: 336 YEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNGYSIS--------KFCNHK 387
Query: 72 EDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVT 131
G Y A N T + + P + + + C
Sbjct: 388 HQPGEYIFHAENDDAQFTKMFTLNIRRKP--------------QV-LAEASASQASCFSD 432
Query: 132 KGDPPLTISWLKNGLPILSDAE----------ITIRSSGEYTSSLSIATLSTGHSGNYTC 181
G P + +W K + E + G++ SS ++ C
Sbjct: 433 -GYPLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNMSEAIKGFLVKC 491
Query: 182 VASNTVASDNHSSNLRVNE 200
A N++ + + L
Sbjct: 492 CAYNSLGTSCETILLNSPG 510
Score = 63.2 bits (153), Expect = 2e-11
Identities = 14/96 (14%), Positives = 28/96 (29%), Gaps = 7/96 (7%)
Query: 12 QTLQPGPPVSLKCIATGNPTPHISWK-------LDGYPLAGDRFVMGQYMSLHGDVISHV 64
Q L C + G P P +WK + + + G +S
Sbjct: 417 QVLAEASASQASCFSDGYPLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSS 476
Query: 65 NISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAP 100
++ + +C A N +G+ + +
Sbjct: 477 TLNMSEAIKGFLVKCCAYNSLGTSCETILLNSPGPF 512
Score = 43.1 bits (101), Expect = 7e-05
Identities = 17/115 (14%), Positives = 32/115 (27%), Gaps = 24/115 (20%)
Query: 176 SGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNL 235
CV N +D+ S G S +Y V+ + ++ L
Sbjct: 7 LPVIKCVLINHKNNDS-------------------SVGKSSSYPMVSES---PEDLGCAL 44
Query: 236 RVNVPPHIGPFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAI-SQPDISIT 289
R + E+ + +V +S W ++ QP +
Sbjct: 45 RPQSSGTVYEAAAVEVDVSASITLQVLV-DAPGNISCLWVFKHSSLNCQPHFDLQ 98
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, CY receptor complex, extracellular
complex; HET: NAG; 4.30A {Homo sapiens}
Length = 423
Score = 139 bits (352), Expect = 1e-38
Identities = 36/202 (17%), Positives = 69/202 (34%), Gaps = 17/202 (8%)
Query: 2 HPQLIYKFIQQTLQPGPPVSLKCIAT-GNPTPHISWKLDGYPL-AGDRFVMGQYMSLHGD 59
+ Q L+ G P+ ++C A N ++W+L+ L G+ F M Y +
Sbjct: 227 NQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTM 286
Query: 60 V-ISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKV 118
+ I +SSV D+G Y C+++ SA + + + T++S ++
Sbjct: 287 IRILFAFVSSVARNDTGYYTCSSSKHPSQ---SALVTIVEKG-----FINATNSSEDYEI 338
Query: 119 HSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGN 178
+ P + +W + + + + S+S G
Sbjct: 339 DQYEEFCFSVRFK-AYPQIRCTWTFSRKSFPCE-----QKGLDNGYSISKFCNHKHQPGE 392
Query: 179 YTCVASNTVASDNHSSNLRVNE 200
Y A N A L +
Sbjct: 393 YIFHAENDDAQFTKMFTLNIRS 414
Score = 129 bits (324), Expect = 1e-34
Identities = 25/281 (8%), Positives = 58/281 (20%), Gaps = 58/281 (20%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVIS 62
+Y+ + ++L+ + W L L +
Sbjct: 49 SGTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHF-----DLQNRGVV 103
Query: 63 HVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGD 122
+ I + +G Y + + T + + + + + R +
Sbjct: 104 SMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTL--------LYTLRRPYFRKMEN 155
Query: 123 RAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCV 182
+ + C+ P + W+ S E + +
Sbjct: 156 QDALVCISE-SVPEPIVEWVLCDSQGESCKEESPAVVKKEEK------------------ 196
Query: 183 ASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPH 242
L + C A N + +
Sbjct: 197 --------------------------VLHELFGTDIRCCARNELGRECTRLFTIDLNQTP 230
Query: 243 IGPFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQ 283
L G + C + L W A+ +
Sbjct: 231 QTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEE 271
Score = 114 bits (286), Expect = 3e-29
Identities = 24/267 (8%), Positives = 66/267 (24%), Gaps = 57/267 (21%)
Query: 20 VSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQC 79
+L CI+ P P + W L + + + +C
Sbjct: 157 DALVCISESVPEPIVEWVLCDSQG--------ESCKEESPAVVKKEEKVLHELFGTDIRC 208
Query: 80 TATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTI 139
A N +G + + + + + G+ ++C + +
Sbjct: 209 CARNELGRECTRLFTIDLNQT--------PQTTLPQLFLKVGEPLWIRCKAVHVNHGFGL 260
Query: 140 SWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVN 199
+W + + + + + I
Sbjct: 261 TWELENKALEEGNYFEMSTYSTNRTMIRI------------------------------- 289
Query: 200 EYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGPFTFG---ELMEGVR 256
+++++ +G YTC +S + S+ + + I E+ +
Sbjct: 290 ---LFAFVSSVARNDTGYYTCSSSKHP---SQSALVTIVEKGFINATNSSEDYEIDQYEE 343
Query: 257 TQVACVVQSGDLPLSLQWYKNGLAISQ 283
+ + + W + +
Sbjct: 344 FCFSVRFK-AYPQIRCTWTFSRKSFPC 369
Score = 69.3 bits (169), Expect = 1e-13
Identities = 11/99 (11%), Positives = 18/99 (18%), Gaps = 15/99 (15%)
Query: 9 FIQQTLQP-------GPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVI 61
FI T P +W ++ + S+
Sbjct: 326 FINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNGYSIS---- 381
Query: 62 SHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAP 100
G Y A N T + +
Sbjct: 382 ----KFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRSGT 416
Score = 43.9 bits (103), Expect = 3e-05
Identities = 15/110 (13%), Positives = 28/110 (25%), Gaps = 23/110 (20%)
Query: 176 SGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNL 235
CV N +D+ S G S +Y V+ + L
Sbjct: 7 LPVIKCVLINHKNNDS-------------------SVGKSSSYPMVSESPEDLGCA---L 44
Query: 236 RVNVPPHIGPFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQPD 285
R + E+ + +V +S W +++
Sbjct: 45 RPQSSGTVYEAAAVEVDVSASITLQVLV-DAPGNISCLWVFKHSSLNCQP 93
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, membrane, glycoprote adhesion,
transmembrane; HET: NAG; 2.00A {Homo sapiens}
Length = 189
Score = 132 bits (334), Expect = 3e-38
Identities = 40/191 (20%), Positives = 72/191 (37%), Gaps = 20/191 (10%)
Query: 12 QTLQPGPPVSLKCIATGNPTPHISWKLDGYPL---AGDRFVMGQYMSLHGDVISHVNISS 68
Q + G + C + +P P +SW + + +RF M +L I +
Sbjct: 12 QEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQ--------ILN 63
Query: 69 VRVEDSGIYQCTATNRVGSQTHSADMR-VYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQ 127
+ D GIY+C + D+ + + P + S + G+
Sbjct: 64 INKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQ----KSFNATAERGEEMTFS 119
Query: 128 CLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTV 187
C + G P ISW +NG I + + ++ S + L++ + G Y C A+N
Sbjct: 120 CRAS-GSPEPAISWFRNGKLIEENEKYILKGSN---TELTVRNIINSDGGPYVCRATNKA 175
Query: 188 ASDNHSSNLRV 198
D + L+V
Sbjct: 176 GEDEKQAFLQV 186
Score = 81.4 bits (201), Expect = 7e-19
Identities = 23/96 (23%), Positives = 44/96 (45%), Gaps = 6/96 (6%)
Query: 2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVI 61
+ K T + G ++ C A+G+P P ISW +G + + +Y+ +
Sbjct: 98 AISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENE----KYILKGSN-- 151
Query: 62 SHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVY 97
+ + + ++ D G Y C ATN+ G A ++V+
Sbjct: 152 TELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVF 187
Score = 65.2 bits (159), Expect = 5e-13
Identities = 29/177 (16%), Positives = 54/177 (30%), Gaps = 48/177 (27%)
Query: 114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLST 173
+ G+ A V C V+ P +SWL + + + ++
Sbjct: 10 SPQEFKQGEDAEVVCRVS-SSPAPAVSWLYHNEEVTTISDNRFA---------------- 52
Query: 174 GHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSS 233
+ ++N +L I ++ G Y C +
Sbjct: 53 -------------MLANN------------NLQILNINKSDEGIYRCEGRVEARGEIDFR 87
Query: 234 NLR--VNVPPHIG---PFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQPD 285
++ VNVPP I G +C SG ++ W++NG I + +
Sbjct: 88 DIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRA-SGSPEPAISWFRNGKLIEENE 143
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane,
transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo
sapiens}
Length = 291
Score = 135 bits (341), Expect = 3e-38
Identities = 39/202 (19%), Positives = 70/202 (34%), Gaps = 20/202 (9%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPL---AGDRFVMGQYMSLHGD 59
Q + G + C + +P P +SW + + +RF M +L
Sbjct: 99 LTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQ-- 156
Query: 60 VISHVNISSVRVEDSGIYQCTATN-RVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKV 118
I ++ D GIY+C G + + + P + S +
Sbjct: 157 ------ILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQ----KSFNATA 206
Query: 119 HSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGN 178
G+ C + G P ISW +NG I + + ++ + L++ + G
Sbjct: 207 ERGEEMTFSCRAS-GSPEPAISWFRNGKLIEENEKYILK---GSNTELTVRNIINSDGGP 262
Query: 179 YTCVASNTVASDNHSSNLRVNE 200
Y C A+N D + L+V
Sbjct: 263 YVCRATNKAGEDEKQAFLQVFV 284
Score = 134 bits (339), Expect = 6e-38
Identities = 51/290 (17%), Positives = 91/290 (31%), Gaps = 66/290 (22%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVIS 62
Q+ + L G C A G P + G + + + + V S
Sbjct: 5 LQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQ----RVVVQKEGVRS 60
Query: 63 HVNISSVRVEDSGIYQCTATNRVGS-QTHSADMRVYDAP---GQPQDVKLVTSNSRSIKV 118
+ I + +ED+GIY+C AT+ G Q + + +Y +
Sbjct: 61 RLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQ----------EF 110
Query: 119 HSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAE--ITIRSSGEYTSSLSIATLSTGHS 176
G+ A V C V+ P +SWL + + + ++ + ++ +L I ++
Sbjct: 111 KQGEDAEVVCRVS-SSPAPAVSWLYHNEEVTTISDNRFAMLANN----NLQILNINKSDE 165
Query: 177 GNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLR 236
G Y C + ++ V
Sbjct: 166 GIYRCEGRVEARGEIDFRDIIV-------------------------------------I 188
Query: 237 VNVPPHI---GPFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQ 283
VNVPP I G +C SG ++ W++NG I +
Sbjct: 189 VNVPPAISMPQKSFNATAERGEEMTFSCRA-SGSPEPAISWFRNGKLIEE 237
Score = 93.3 bits (232), Expect = 2e-22
Identities = 22/103 (21%), Positives = 44/103 (42%), Gaps = 8/103 (7%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLA-GDRFVMGQYMSLHGDVI 61
+ K T + G ++ C A+G+P P ISW +G + +++++ +
Sbjct: 195 ISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNT------ 248
Query: 62 SHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQ 104
+ + ++ D G Y C ATN+ G A ++V+
Sbjct: 249 -ELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQHHHHH 290
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer,
immunoglobul domain, muscle protein, thick filament,
contractIle protein; 2.24A {Homo sapiens}
Length = 212
Score = 132 bits (334), Expect = 5e-38
Identities = 34/212 (16%), Positives = 64/212 (30%), Gaps = 37/212 (17%)
Query: 17 GPPVSLKC----------IATGNPTPHISWKLDGYPL-AGDRFVM---GQYMSLHGDVIS 62
+ ++ + ++W +G + DR G+ + L
Sbjct: 8 ATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQ----- 62
Query: 63 HVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDV--------------KL 108
I+ D G Y + + D+ + ++
Sbjct: 63 ---INEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARV 119
Query: 109 VTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSI 168
+ + + G + C V GDPP +SWLKN + ++ T+ +I
Sbjct: 120 LGGLPDVVTIQEGKALNLTCNVW-GDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTI 178
Query: 169 ATLSTGHSGNYTCVASNTVASDNHSSNLRVNE 200
+ST SG Y V N S+ + V
Sbjct: 179 NGVSTADSGKYGLVVKNKYGSETSDFTVSVFI 210
Score = 88.4 bits (219), Expect = 3e-21
Identities = 25/96 (26%), Positives = 39/96 (40%), Gaps = 5/96 (5%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLA-GDRFVMGQYMSLHGDVI 61
L T+Q G ++L C G+P P +SW + LA D +
Sbjct: 118 RVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHC----NLKFEAGRT 173
Query: 62 SHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVY 97
++ I+ V DSG Y N+ GS+T + V+
Sbjct: 174 AYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVF 209
Score = 84.5 bits (209), Expect = 9e-20
Identities = 33/185 (17%), Positives = 55/185 (29%), Gaps = 30/185 (16%)
Query: 102 QPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGE 161
D+K+ ++ + + VT L ++W NG I + +GE
Sbjct: 7 SATDLKIQST---------AEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGE 57
Query: 162 YTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCV 221
L I + G Y + + +L Y
Sbjct: 58 -QIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDE------------------ 98
Query: 222 ASNTVASDNHSSNLRVNVPPHIGPF-TFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLA 280
A ++ N +G + EG + C V GD P + W KN A
Sbjct: 99 AYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNV-WGDPPPEVSWLKNEKA 157
Query: 281 ISQPD 285
++Q D
Sbjct: 158 LAQTD 162
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM;
2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
PDB: 1ie5_A
Length = 291
Score = 134 bits (338), Expect = 8e-38
Identities = 40/189 (21%), Positives = 74/189 (39%), Gaps = 12/189 (6%)
Query: 12 QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRV 71
Q + G + C + P I WK G + + +++ L + + I ++
Sbjct: 110 QEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKD--VRFIVLSNNYL---QIRGIKK 164
Query: 72 EDSGIYQCTATNRVGSQTHSADMRVY-DAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLV 130
D G Y+C + + D++V + P Q + + + G + C
Sbjct: 165 TDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQ----ARQSIVNATANLGQSVTLVCDA 220
Query: 131 TKGDPPLTISWLKNGLPILSDAEITI-RSSGEYTSSLSIATLSTGHSGNYTCVASNTVAS 189
G P T+SW K+G PI ++ E + +S L+I + Y C+A N
Sbjct: 221 D-GFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGE 279
Query: 190 DNHSSNLRV 198
+ S +L+V
Sbjct: 280 QDASIHLKV 288
Score = 120 bits (303), Expect = 1e-32
Identities = 44/281 (15%), Positives = 84/281 (29%), Gaps = 62/281 (22%)
Query: 12 QTLQPGPPVSLKCIATGNPT-PHISW-KLDGYPLAGDRFVMGQYMSLHGDVISHV-NISS 68
+ G C G+ ISW +G L+ ++ + + D S I +
Sbjct: 12 GEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQ---QRISVVWNDDDSSTLTIYN 68
Query: 69 VRVEDSGIYQCTATNRVGS-QTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQ 127
++D+GIY+C T G+ + +++++ + + + G+ A +
Sbjct: 69 ANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKL-------MFKNAPTPQEFKEGEDAVIV 121
Query: 128 CLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTV 187
C V P TI W G ++ ++
Sbjct: 122 CDVV-SSLPPTIIWKHKGRDVILKKDVRFIVLS--------------------------- 153
Query: 188 ASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSN--LRVNVPPHIG- 244
+ L I + G Y C + + + + VNVPP +
Sbjct: 154 --------------NNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQA 199
Query: 245 --PFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQ 283
G + C G ++ W K+G I
Sbjct: 200 RQSIVNATANLGQSVTLVCDA-DGFPEPTMSWTKDGEPIEN 239
Score = 92.2 bits (229), Expect = 5e-22
Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 2/95 (2%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVIS 62
Q + T G V+L C A G P P +SW DG P+ + +++ S
Sbjct: 197 VQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDS--S 254
Query: 63 HVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVY 97
+ I +V D Y C A N+ G Q S ++V+
Sbjct: 255 ELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVF 289
Score = 62.2 bits (151), Expect = 2e-11
Identities = 20/121 (16%), Positives = 47/121 (38%), Gaps = 6/121 (4%)
Query: 109 VTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLK-NGLPILSDAE-ITIRSSGEYTSSL 166
V ++ G+ C V ISW NG + + + I++ + + +S+L
Sbjct: 5 VDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTL 64
Query: 167 SIATLSTGHSGNYTCVASNTVASDNHSS-NLRVNEY---TSSLSIATLSTGHSGNYTCVA 222
+I + +G Y CV + + + ++ N+++ + ++ + G C
Sbjct: 65 TIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDV 124
Query: 223 S 223
Sbjct: 125 V 125
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-
like; 2.50A {Homo sapiens}
Length = 312
Score = 133 bits (337), Expect = 2e-37
Identities = 35/287 (12%), Positives = 78/287 (27%), Gaps = 33/287 (11%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPL-AGDRFVMGQYMSLHGDVI 61
P + ++ +C P SW D R +
Sbjct: 4 PFTKEVVVNVDDDGVISLNFEC-DKMTPKSEFSWSKDYVSTEDSPRLEV-----ESKGNK 57
Query: 62 SHVNISSVRVEDSGIYQCTATNRVGS----QTHSADMRVYDAPGQPQDVKLV-TSNSRSI 116
+ + + ++D GIY C T+ G +++ A V + ++
Sbjct: 58 TKMTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAV 117
Query: 117 KVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGE-YTSSLSIATLSTGH 175
++ + K ++++ N I + + + + L
Sbjct: 118 EILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDED 177
Query: 176 SGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNL 235
G YT + A+++ + L + + ++
Sbjct: 178 EGTYTFQLQDGKATNHSTVVLVGDVFKKLQ--------------------KEAEFQRQEW 217
Query: 236 RVNVPPHIGPFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAIS 282
PH + E+ + C V + + WYK+ IS
Sbjct: 218 IRKQGPHFVEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREIS 264
Score = 118 bits (297), Expect = 1e-31
Identities = 25/200 (12%), Positives = 56/200 (28%), Gaps = 18/200 (9%)
Query: 11 QQTLQPGPPVSLKCIATGNPTPHISWKLDGYPL-AGDRFVMGQYMSLHGDVISHVNISSV 69
+ L+ G + +++ + + G ++ M I + + +
Sbjct: 117 VEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKM---HIDRNTGIIEMFMEKL 173
Query: 70 RVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSR-----------SIKV 118
+ ED G Y + + + + ++ + S +V
Sbjct: 174 QDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEV 233
Query: 119 HSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGN 178
++C V I W K+ I D + + +L I S +G
Sbjct: 234 TGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGI---CTLLITEFSKKDAGI 290
Query: 179 YTCVASNTVASDNHSSNLRV 198
Y + + D L
Sbjct: 291 YEVILKDDRGKDKSRLKLVD 310
Score = 71.6 bits (175), Expect = 1e-14
Identities = 19/185 (10%), Positives = 47/185 (25%), Gaps = 40/185 (21%)
Query: 113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLS 172
++ +C P SW K+ + + + S G + ++ L
Sbjct: 10 VVNVDDDGVISLNFECDK--MTPKSEFSWSKDYVSTEDSPRLEVESKG-NKTKMTFKDLG 66
Query: 173 TGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHS 232
G Y+C ++T +S + +
Sbjct: 67 MDDLGIYSCDVTDTDGI-------------------------------ASSYLIDEEELK 95
Query: 233 SNLRVNVPPHIGPFTFG-----ELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQ-PDI 286
L ++ E++E + + + + + N I + P
Sbjct: 96 RLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKY 155
Query: 287 SITLT 291
+ +
Sbjct: 156 KMHID 160
Score = 68.1 bits (166), Expect = 2e-13
Identities = 15/97 (15%), Positives = 29/97 (29%), Gaps = 11/97 (11%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTP-HISWKLDGYPL-AGDRFVM-GQYMSLHGD 59
+++ + V LKC HI W D + ++ +L
Sbjct: 222 GPHFVEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLL-- 279
Query: 60 VISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRV 96
I+ +D+GIY+ + G +
Sbjct: 280 ------ITEFSKKDAGIYEVILKDDRGKDKSRLKLVD 310
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain,
immunoglobulin superfamily, transmembrane,
phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A
{Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Length = 389
Score = 135 bits (341), Expect = 2e-37
Identities = 50/199 (25%), Positives = 80/199 (40%), Gaps = 12/199 (6%)
Query: 6 IYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPL---AGDRFVMGQYMSLHGDVIS 62
I + +T V+L C A G P P I+WK GD+ + G+ S
Sbjct: 4 IIQLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSS 63
Query: 63 HVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGD 122
++I V++ DSG Y C A +R+G S + + AP SN G+
Sbjct: 64 SLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAP-------KFISNQTIYYSWEGN 116
Query: 123 RAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIR-SSGEYTSSLSIATLSTGHSGNYTC 181
+ C V +PP +I W ++ L + + ++ S L IA S G Y C
Sbjct: 117 PINISCDVK-SNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNC 175
Query: 182 VASNTVASDNHSSNLRVNE 200
A+N + + L + +
Sbjct: 176 TATNHIGTRFQEYILALAD 194
Score = 102 bits (257), Expect = 2e-25
Identities = 40/199 (20%), Positives = 65/199 (32%), Gaps = 38/199 (19%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVIS 62
P+ I G P+++ C NP I W+ D L + S
Sbjct: 101 PKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYS--TGRKM 158
Query: 63 HVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGD 122
+ I+ D G Y CTATN +G++ + + D P P VK++ + +
Sbjct: 159 ILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALADVPSSPYGVKIIELSQTTA------ 212
Query: 123 RAGVQCLVTKGDPPLTISWLK----NGLPIL----------SDAEITIRSSGEYTSSLSI 168
+S+ K G+PI S+ +RS G T + +
Sbjct: 213 ---------------KVSFNKPDSHGGVPIHHYQVDVKEVASEIWKIVRSHGVQT-MVVL 256
Query: 169 ATLSTGHSGNYTCVASNTV 187
L + A N
Sbjct: 257 NNLEPNTTYEIRVAAVNGK 275
Score = 74.5 bits (183), Expect = 2e-15
Identities = 28/169 (16%), Positives = 51/169 (30%), Gaps = 36/169 (21%)
Query: 114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLST 173
++ + + + C G+P I+W + + G+ + I
Sbjct: 8 KNETTYENGQVTLVCDAE-GEPIPEITWKRAVDGFTF-------TEGDKSLDGRIEVKGQ 59
Query: 174 GHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSS 233
S SL I + SG Y C A++ + S
Sbjct: 60 HGSS--------------------------SLHIKDVKLSDSGRYDCEAASRIGGHQKSM 93
Query: 234 NLRVNVPPHI-GPFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAI 281
L + P T EG ++C V + P S+ W ++ L +
Sbjct: 94 YLDIEYAPKFISNQTIYYSWEGNPINISCDV-KSNPPASIHWRRDKLVL 141
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion,
membrane, development protein; HET: NAG; 1.95A
{Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Length = 388
Score = 134 bits (339), Expect = 4e-37
Identities = 46/188 (24%), Positives = 64/188 (34%), Gaps = 23/188 (12%)
Query: 12 QTLQPGPPVSLKCIATGNPTPHISW-KLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVR 70
L +SL C A G P P W K V+ + + I
Sbjct: 222 LELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLI---IKDAV 278
Query: 71 VEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLV 130
VEDSG Y C N VG ++ + V + + V G A C
Sbjct: 279 VEDSGKYLCVVNNSVGGESVETVLTVTAPL-------SAKIDPPTQTVDFGRPAVFTCQY 331
Query: 131 TKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASD 190
T G+P T+SW+K+G I S L I ++ G Y C N S
Sbjct: 332 T-GNPIKTVSWMKDGKAIGHSE-----------SVLRIESVKKEDKGMYQCFVRNDRESA 379
Query: 191 NHSSNLRV 198
S+ L++
Sbjct: 380 EASAELKL 387
Score = 120 bits (301), Expect = 1e-31
Identities = 49/295 (16%), Positives = 87/295 (29%), Gaps = 64/295 (21%)
Query: 12 QTLQPGPPVSLKCIA---TGNPTPHISWKLDGYPL------AGDRFVMGQYMSLHGDVIS 62
+ + G +KC+ + +SW D ++++ LH
Sbjct: 113 EHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELH----- 167
Query: 63 HVNISSVRVEDS-GIYQCTATNRVGSQT---HSADMRVYDAPGQPQDVKLVTSNSRSIKV 118
I V ED YQC +R+ +T + V P + + +++
Sbjct: 168 ---IREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLEL 224
Query: 119 HSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGN 178
+ C G P + W K
Sbjct: 225 MVAHTISLLCPAQ-GFPAPSFRWYKFIEGTTRK--------------------------- 256
Query: 179 YTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVN 238
N RV + + +L I SG Y CV +N+V ++ + L V
Sbjct: 257 -----------QAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVT 305
Query: 239 VPPHI--GPFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQPDISITLT 291
P P T + G C +G+ ++ W K+G AI + + +
Sbjct: 306 APLSAKIDPPTQ-TVDFGRPAVFTCQY-TGNPIKTVSWMKDGKAIGHSESVLRIE 358
Score = 104 bits (260), Expect = 8e-26
Identities = 42/205 (20%), Positives = 66/205 (32%), Gaps = 30/205 (14%)
Query: 8 KFIQQ-----TLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGD--V 60
F+++ ++C A+GNP P I W GD V G V
Sbjct: 5 VFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGD--VPGLRQISSDGKLV 62
Query: 61 ISHVNISSVRVE-DSGIYQCTATNRVGS-QTHSADMRVYDAPGQPQDVKLVTSNSRSIKV 118
R E + +Y C A N+ GS + +R A DV V
Sbjct: 63 FPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADV-------NKEHV 115
Query: 119 HSGDRAGVQCLVTK--GDPPLTISWLKNGLPIL-----SDAEITIRSSGEYTSSLSIATL 171
G+ A ++CL+ D +SW + D + + SG L I +
Sbjct: 116 IRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSG----ELHIREV 171
Query: 172 STGHS-GNYTCVASNTVASDNHSSN 195
+Y C + + + S
Sbjct: 172 GPEDGYKSYQCRTKHRLTGETRLSA 196
Score = 73.4 bits (180), Expect = 5e-15
Identities = 27/96 (28%), Positives = 38/96 (39%), Gaps = 14/96 (14%)
Query: 1 SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDV 60
+ QT+ G P C TGNP +SW DG +
Sbjct: 306 APLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSE------------- 352
Query: 61 ISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRV 96
S + I SV+ ED G+YQC N S SA++++
Sbjct: 353 -SVLRIESVKKEDKGMYQCFVRNDRESAEASAELKL 387
Score = 50.7 bits (121), Expect = 2e-07
Identities = 28/183 (15%), Positives = 52/183 (28%), Gaps = 48/183 (26%)
Query: 113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAE--ITIRSSGEYTSSLSIAT 170
+ I + A ++C G+P I W+++ + D I S G L
Sbjct: 11 TNRIDFSNSTGAEIECKA-SGNPMPEIIWIRSDGTAVGDVPGLRQISSDG----KLVF-- 63
Query: 171 LSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASN---TVA 227
A D H+ Y C+A N ++
Sbjct: 64 -------------PPFRAEDYRQEV------------------HAQVYACLARNQFGSII 92
Query: 228 SDNHSSNLRVNVPPHIGPFTFG-ELMEGVRTQVACVVQS--GDLPLSLQWYKNGLAISQP 284
S ++R V + ++ G + C++ S D + W+ + P
Sbjct: 93 S--RDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFP 150
Query: 285 DIS 287
Sbjct: 151 GAE 153
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker,
immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Length = 642
Score = 137 bits (346), Expect = 8e-37
Identities = 46/283 (16%), Positives = 81/283 (28%), Gaps = 66/283 (23%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVIS 62
+PG +SL C A NP SW +DG
Sbjct: 382 DDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLIDGNIQQHT---------------Q 426
Query: 63 HVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGD 122
+ IS++ ++SG+Y C A N + + + + P K S++ S V D
Sbjct: 427 ELFISNITEKNSGLYTCQANNSASGHSRTTVKTITVSAELP---KPSISSNNSKPVEDKD 483
Query: 123 RAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCV 182
C T W NG +
Sbjct: 484 AVAFTCEP--EAQNTTYLWWVNGQSLPV-------------------------------- 509
Query: 183 ASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSS-NLRVNVPP 241
S L+++ +L++ ++ + Y C N+V+++ L V P
Sbjct: 510 ----------SPRLQLSNGNRTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGP 559
Query: 242 HI--GPFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAIS 282
+ G ++C + + W NG+
Sbjct: 560 DTPIISPPDSSYLSGANLNLSCHS-ASNPSPQYSWRINGIPQQ 601
Score = 131 bits (330), Expect = 1e-34
Identities = 47/335 (14%), Positives = 98/335 (29%), Gaps = 79/335 (23%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVIS 62
+ + + G ++L C A NP SW ++G
Sbjct: 204 DAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWFVNGTFQQST---------------Q 248
Query: 63 HVNISSVRVEDSGIYQCTATNRVGSQTHSADMR--VYDAPGQPQDVKLVTSNSRSIKVHS 120
+ I ++ V +SG Y C A N + VY P +P +++ S V
Sbjct: 249 ELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKP-----FITSNNSNPVED 303
Query: 121 GDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYT 180
D + C T W N + + + + +L++ +++ G Y
Sbjct: 304 EDAVALTCEP--EIQNTTYLWWVNNQSLPVSPRLQLSNDN---RTLTLLSVTRNDVGPYE 358
Query: 181 CVASNTVASDNHSSNLRVNEY-----TSSLSIATLSTGHSGNYTCVAS------------ 223
C N ++ D+ + Y T S S G + + +C A+
Sbjct: 359 CGIQNELSVDHSDPVILNVLYGPDDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLID 418
Query: 224 ----------------------------NTVASDNHSSNLRVNVPPHIGPFTFGE----- 250
N+ + + ++ + V + +
Sbjct: 419 GNIQQHTQELFISNITEKNSGLYTCQANNSASGHSRTTVKTITVSAELPKPSISSNNSKP 478
Query: 251 LMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQPD 285
+ + C ++ + W+ NG ++
Sbjct: 479 VEDKDAVAFTCEPEAQ--NTTYLWWVNGQSLPVSP 511
Score = 121 bits (306), Expect = 3e-31
Identities = 49/334 (14%), Positives = 92/334 (27%), Gaps = 75/334 (22%)
Query: 15 QPGPPVSLKCIATGNPTPHISW----------KLDGYPLAGDRFVMGQYMSLHGDVISHV 64
G V L SW ++ GY + + G S + +
Sbjct: 12 AEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYPNA 71
Query: 65 N--ISSVRVEDSGIYQCTATNRV-GSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSG 121
+ I ++ D+G Y ++ + RVY +P S++ S V
Sbjct: 72 SLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKP-----SISSNNSKPVEDK 126
Query: 122 DRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTC 181
D C T W N + + + + +L++ ++ + +Y C
Sbjct: 127 DAVAFTCEPE--TQDATYLWWVNNQSLPVSPRLQLSNGN---RTLTLFNVTRNDTASYKC 181
Query: 182 VASN---TVASDN--------------HSSNLRVNEY----------------------- 201
N SD+ N
Sbjct: 182 ETQNPVSARRSDSVILNVLYGPDAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWFVNG 241
Query: 202 -----TSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNV-----PPHIGPFTFGEL 251
T L I ++ +SG+YTC A N+ N ++ + V P I +
Sbjct: 242 TFQQSTQELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFITSNNSNPV 301
Query: 252 MEGVRTQVACVVQSGDLPLSLQWYKNGLAISQPD 285
+ + C + W+ N ++
Sbjct: 302 EDEDAVALTCEP--EIQNTTYLWWVNNQSLPVSP 333
Score = 120 bits (303), Expect = 7e-31
Identities = 35/189 (18%), Positives = 62/189 (32%), Gaps = 27/189 (14%)
Query: 12 QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRV 71
+ ++ V+ C T W ++G L + +G+ + + +V
Sbjct: 477 KPVEDKDAVAFTCEPEAQNTT-YLWWVNGQSLPVS----PRLQLSNGN--RTLTLFNVTR 529
Query: 72 EDSGIYQCTATNRVGSQTH-SADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLV 130
D+ Y C N V + + V P + SG + C
Sbjct: 530 NDARAYVCGIQNSVSANRSDPVTLDVLYGP------DTPIISPPDSSYLSGANLNLSCHS 583
Query: 131 TKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASD 190
+P SW NG+P ++T L IA ++ ++G Y C SN
Sbjct: 584 A-SNPSPQYSWRINGIPQ------------QHTQVLFIAKITPNNNGTYACFVSNLATGR 630
Query: 191 NHSSNLRVN 199
N+S +
Sbjct: 631 NNSIVKSIT 639
Score = 120 bits (301), Expect = 1e-30
Identities = 52/326 (15%), Positives = 96/326 (29%), Gaps = 86/326 (26%)
Query: 12 QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRV 71
+ ++ V+ C W ++ L +S ++ + +V
Sbjct: 121 KPVEDKDAVAFTCEPETQD-ATYLWWVNNQSLPVS---PRLQLSNGNRTLT---LFNVTR 173
Query: 72 EDSGIYQCTATNRVGS-QTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLV 130
D+ Y+C N V + ++ S + V P P T + + SG+ + C
Sbjct: 174 NDTASYKCETQNPVSARRSDSVILNVLYGPDAP------TISPLNTSYRSGENLNLSCHA 227
Query: 131 TKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASD 190
+PP SW NG S T L I ++ +SG+YTC A N+
Sbjct: 228 A-SNPPAQYSWFVNGTFQQS------------TQELFIPNITVNNSGSYTCQAHNSDTGL 274
Query: 191 NHSSNLRVNEY-------TSSLSIATLSTGHSGNYTCVA--------------------- 222
N ++ + Y +S + + + TC
Sbjct: 275 NRTTVTTITVYAEPPKPFITSNNSNPVEDEDAVALTCEPEIQNTTYLWWVNNQSLPVSPR 334
Query: 223 ---------------------------SNTVASDNHSS-NLRVNVPPHI--GPFTFGELM 252
N ++ D+ L V P ++
Sbjct: 335 LQLSNDNRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTYYR 394
Query: 253 EGVRTQVACVVQSGDLPLSLQWYKNG 278
GV ++C + + P W +G
Sbjct: 395 PGVNLSLSCHA-ASNPPAQYSWLIDG 419
Score = 72.7 bits (178), Expect = 2e-14
Identities = 17/94 (18%), Positives = 34/94 (36%), Gaps = 15/94 (15%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVIS 62
I + G ++L C + NP+P SW+++G P
Sbjct: 560 DTPIISPPDSSYLSGANLNLSCHSASNPSPQYSWRINGIPQQHT---------------Q 604
Query: 63 HVNISSVRVEDSGIYQCTATNRVGSQTHSADMRV 96
+ I+ + ++G Y C +N + +S +
Sbjct: 605 VLFIAKITPNNNGTYACFVSNLATGRNNSIVKSI 638
Score = 50.3 bits (120), Expect = 4e-07
Identities = 26/181 (14%), Positives = 46/181 (25%), Gaps = 31/181 (17%)
Query: 109 VTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSI 168
+T S V G + SW K + I Y
Sbjct: 2 LTIESTPFNVAEGKEVLLLVHNL-PQHLFGYSWYKGERVDGNRQIIG------YVIGTQQ 54
Query: 169 ATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTV-A 227
AT +SG + +SL I + +G YT +
Sbjct: 55 ATPGPAYSGREIIYPN------------------ASLLIQNIIQNDTGFYTLHVIKSDLV 96
Query: 228 SDNHSSNLRVNV---PPHIGPFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQP 284
++ + RV P I + + C ++ + W+ N ++
Sbjct: 97 NEEATGQFRVYPELPKPSISSNNSKPVEDKDAVAFTCEPETQ--DATYLWWVNNQSLPVS 154
Query: 285 D 285
Sbjct: 155 P 155
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular
adhesion, ligand-independent DIME mutational analysis,
transferase; HET: EPE; 1.96A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.4
Length = 182
Score = 128 bits (323), Expect = 1e-36
Identities = 39/190 (20%), Positives = 67/190 (35%), Gaps = 28/190 (14%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVIS 62
+L+ ++ T+ G PV L C G P I W DG + + I
Sbjct: 3 LKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQL--YIPVSEQHWIG 60
Query: 63 HVNISSVRVEDSGIYQCTATNRVGSQ-THSADMRVYDAP---GQPQDVKLVTSNSRSIKV 118
+++ SV D+G Y C + ++ + + V P +P+D+ V
Sbjct: 61 FLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGVPFFTVEPKDL----------AV 110
Query: 119 HSGDRAGVQCLVTKGDP-PLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSG 177
+ C G P P+TI W + I S L++ ++ S
Sbjct: 111 PPNAPFQLSCEAV-GPPEPVTIVWWRGTTK--------IGGPAPSPSVLNVTGVT--QST 159
Query: 178 NYTCVASNTV 187
++C A N
Sbjct: 160 MFSCEAHNLK 169
Score = 72.5 bits (178), Expect = 1e-15
Identities = 25/176 (14%), Positives = 47/176 (26%), Gaps = 41/176 (23%)
Query: 114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLST 173
+ V G + C V G I W+K+G + +
Sbjct: 10 VKLTVSQGQPVKLNCSVE-GMEEPDIQWVKDGAVVQN----------------------- 45
Query: 174 GHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTV-ASDNHS 232
D + + LS+ ++ +G Y C + +
Sbjct: 46 ---------------LDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEISQP 90
Query: 233 SNLRVNVPPHI-GPFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQPDIS 287
L V P + Q++C P+++ W++ I P S
Sbjct: 91 VWLTVEGVPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAPS 146
Score = 65.6 bits (160), Expect = 3e-13
Identities = 19/91 (20%), Positives = 27/91 (29%), Gaps = 14/91 (15%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTP-HISWKLDGYPLAGDRFVMGQYMSLHGDVI 61
P + + P P L C A G P P I W + G
Sbjct: 99 PFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKI-------------GGPAP 145
Query: 62 SHVNISSVRVEDSGIYQCTATNRVGSQTHSA 92
S ++ V S ++ C A N G +
Sbjct: 146 SPSVLNVTGVTQSTMFSCEAHNLKGLASSRT 176
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold,
glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4
b.1.1.4 PDB: 2ncm_A 3ncm_A
Length = 191
Score = 126 bits (319), Expect = 5e-36
Identities = 37/202 (18%), Positives = 73/202 (36%), Gaps = 21/202 (10%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNP-TPHISW-KLDGYPLAGDRFVMGQYMSLHGDV 60
Q+ Q + G C G+ ISW +G L+ ++ + + D
Sbjct: 3 LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQ---QRISVVWNDD 59
Query: 61 ISHV-NISSVRVEDSGIYQCTATNRVGS-QTHSADMRVYDAPGQPQDVKLVTSNSRSIKV 118
S I + ++D+GIY+C T G+ + +++++ + + +
Sbjct: 60 DSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKL-------MFKNAPTPQEF 112
Query: 119 HSGDRAGVQCLVTKGDPPLTISWLKNGLPIL--SDAEITIRSSGEYTSSLSIATLSTGHS 176
G+ A + C V P TI W G ++ D + S+ L I +
Sbjct: 113 KEGEDAVIVCDVV-SSLPPTIIWKHKGRDVILKKDVRFIVLSNN----YLQIRGIKKTDE 167
Query: 177 GNYTCVASNTVASDNHSSNLRV 198
G Y C + + +++V
Sbjct: 168 GTYRCEGRILARGEINFKDIQV 189
Score = 76.4 bits (188), Expect = 6e-17
Identities = 18/99 (18%), Positives = 31/99 (31%), Gaps = 11/99 (11%)
Query: 1 SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPL---AGDRFVMGQYMSLH 57
Q + G + C + P I WK G + RF++ L
Sbjct: 99 QKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQ 158
Query: 58 GDVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRV 96
I ++ D G Y+C + + D++V
Sbjct: 159 --------IRGIKKTDEGTYRCEGRILARGEINFKDIQV 189
Score = 66.4 bits (162), Expect = 2e-13
Identities = 30/181 (16%), Positives = 52/181 (28%), Gaps = 44/181 (24%)
Query: 109 VTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLK-NGLPIL-SDAEITIRSSGEYTSSL 166
V ++ G+ C V ISW NG + + I++ + + +S+L
Sbjct: 5 VDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTL 64
Query: 167 SIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTV 226
+I N D +G Y CV +
Sbjct: 65 TI---------------YNANIDD------------------------AGIYKCVVTAED 85
Query: 227 -ASDNHSSNLRVNVPPHIG-PFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQP 284
+ N+++ T E EG + C V LP ++ W G +
Sbjct: 86 GTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDV-VSSLPPTIIWKHKGRDVILK 144
Query: 285 D 285
Sbjct: 145 K 145
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1,
isoform 2; hydrolase, immunoglobulin domain, nucleus,
protease; 2.80A {Homo sapiens}
Length = 218
Score = 125 bits (316), Expect = 2e-35
Identities = 39/194 (20%), Positives = 62/194 (31%), Gaps = 33/194 (17%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVIS 62
++ + + G V L C ATG+P W + S
Sbjct: 19 SKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGN-------------TS 65
Query: 63 HVNISSVRVEDSGIYQCTATNRVGSQ-THSADMRVYDAPGQPQDVKL--------VTSNS 113
+ ++V V+D+G Y C N + + + + V D P Q +
Sbjct: 66 ELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEP 125
Query: 114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLST 173
S K+ G +QC+ G P W KN LP+ + E + +
Sbjct: 126 TSQKLMPGSTLVLQCVAV-GSPIPHYQWFKNELPL----------THETKKLYMVPYVDL 174
Query: 174 GHSGNYTCVASNTV 187
H G Y C N
Sbjct: 175 EHQGTYWCHVYNDR 188
Score = 74.1 bits (182), Expect = 5e-16
Identities = 26/103 (25%), Positives = 38/103 (36%), Gaps = 18/103 (17%)
Query: 12 QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHV-NISSVR 70
Q L PG + L+C+A G+P PH W + PL + + + V
Sbjct: 128 QKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHET--------------KKLYMVPYVD 173
Query: 71 VEDSGIYQCTATNRVGSQTHSADMRVYDAP---GQPQDVKLVT 110
+E G Y C N SQ + D G P + + T
Sbjct: 174 LEHQGTYWCHVYNDRDSQDSKKVEIIIDELNNLGHPDNKEQTT 216
Score = 64.5 bits (157), Expect = 2e-12
Identities = 38/218 (17%), Positives = 55/218 (25%), Gaps = 72/218 (33%)
Query: 85 VGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKN 144
+GS H P + +T N S V +G + C T G P + W K
Sbjct: 1 MGSSHHHHHHSSGLVPRGSK----ITVNPESKAVLAGQFVKLCCRAT-GHPFVQYQWFKM 55
Query: 145 GLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSS 204
I + TS
Sbjct: 56 NKEIPNGN-------------------------------------------------TSE 66
Query: 205 LSIATLSTGHSGNYTCVASNTVASDN-HSSNLRVNVPPHIGPFTFG-------------- 249
L + +G Y C +N + S L V P +
Sbjct: 67 LIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPT 126
Query: 250 --ELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQPD 285
+LM G + CV G QW+KN L ++
Sbjct: 127 SQKLMPGSTLVLQCVA-VGSPIPHYQWFKNELPLTHET 163
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell
adhesion, transmembrane, disulfide bond, alternative
splicing; HET: NAG; 1.95A {Rattus norvegicus}
Length = 190
Score = 122 bits (308), Expect = 2e-34
Identities = 48/203 (23%), Positives = 76/203 (37%), Gaps = 25/203 (12%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHIS--WKLDGYPLAGDRFVMGQYMSLHGDV 60
P+++ PV+L+C T + + W +G L R
Sbjct: 4 PRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNASNM-EYR--- 59
Query: 61 ISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHS 120
I+ R EDSG Y C + V + +A + V AP +T + RS +
Sbjct: 60 -----INKPRAEDSGEYHCVY-HFVSAPKANATIEVKAAP-------DITGHKRSENKNE 106
Query: 121 GDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIR----SSGEYTSSLSIATLS-TGH 175
G A + C G P W K + + + + E + L+I L T
Sbjct: 107 GQDAMMYCKSV-GYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITED 165
Query: 176 SGNYTCVASNTVASDNHSSNLRV 198
G Y C A+N++ S + S+ LRV
Sbjct: 166 PGEYECNATNSIGSASVSTVLRV 188
Score = 63.7 bits (155), Expect = 2e-12
Identities = 28/177 (15%), Positives = 46/177 (25%), Gaps = 49/177 (27%)
Query: 109 VTSNSRSIKVHSGDRAGVQCLVT-KGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLS 167
+ ++ I S +QC +T + W KNG+ + +
Sbjct: 6 IVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTAT---------------- 49
Query: 168 IATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVA 227
R N I SG Y CV + V+
Sbjct: 50 -----------------------------RKNASNMEYRINKPRAEDSGEYHCVY-HFVS 79
Query: 228 SDNHSSNLRVNVPPHI-GPFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQ 283
+ ++ + V P I G EG + C G W K + +
Sbjct: 80 APKANATIEVKAAPDITGHKRSENKNEGQDAMMYCKS-VGYPHPEWMWRKKENGVFE 135
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling
protein/receptor, growth regulation/complex, vitamin
K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Length = 195
Score = 121 bits (304), Expect = 9e-34
Identities = 36/207 (17%), Positives = 73/207 (35%), Gaps = 30/207 (14%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIA-TGNPTPHISWKLDGYPLAGD-----RFVMGQYMSL 56
+ T G +L+C P + W DG L + +G+
Sbjct: 3 SPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQD 62
Query: 57 HGDVISHVNISSVRVEDSGIYQCTATNRVGS-QTHSADMRVYDAP---GQPQDVKLVTSN 112
V+S + I+S+++ D+G YQC + + + + P +P+D
Sbjct: 63 DWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPEDR------ 116
Query: 113 SRSIKVHSGDRAGVQCLVTKGDP-PLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATL 171
V + + C G P P+ + WL++ +P+ + + SL + L
Sbjct: 117 ----TVAANTPFNLSCQAQ-GPPEPVDLLWLQDAVPLATAPGHGPQ------RSLHVPGL 165
Query: 172 STGHSGNYTCVASNTVASDNHSSNLRV 198
+ + +++C A N +
Sbjct: 166 N--KTSSFSCEAHNAKGVTTSRTATIT 190
Score = 71.9 bits (176), Expect = 2e-15
Identities = 20/171 (11%), Positives = 46/171 (26%), Gaps = 33/171 (19%)
Query: 114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLST 173
+I G ++C + P + WL++G + +
Sbjct: 10 GNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPL------------- 56
Query: 174 GHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVAS-DNHS 232
S L I +L +G Y C+ + +
Sbjct: 57 ------------------GEDEQDDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQP 98
Query: 233 SNLRVNVPPHI-GPFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAIS 282
+ + P+ + ++C Q P+ L W ++ + ++
Sbjct: 99 GYVGLEGLPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLA 149
Score = 27.6 bits (61), Expect = 3.5
Identities = 6/25 (24%), Positives = 11/25 (44%)
Query: 261 CVVQSGDLPLSLQWYKNGLAISQPD 285
C +Q P + W ++G + D
Sbjct: 24 CQLQVQGEPPEVHWLRDGQILELAD 48
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor
tyrosine kinase, class III, recep ligand complex,
cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A
{Mus musculus}
Length = 290
Score = 123 bits (309), Expect = 1e-33
Identities = 42/205 (20%), Positives = 70/205 (34%), Gaps = 15/205 (7%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISW-KLDGYPLAGDRFVMGQYMSLHGDVI 61
+L + + ++C T S + DG L D G I
Sbjct: 92 AKLFLVGLPLFGKEDSDALVRCPLTDPQVSQYSLIECDGKSLPTDLTF--VPNPKAGITI 149
Query: 62 SHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSG 121
+V R +C A G+ HS + + + +V+ S + G
Sbjct: 150 KNV----KRAYHRLCVRCAAQRD-GTWLHSDKFTLK-VREAIKAIPVVSVPETSHLLKKG 203
Query: 122 DRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSG------EYTSSLSIATLSTGH 175
D V C + + WLK A++ S E +L+I++
Sbjct: 204 DTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDD 263
Query: 176 SGNYTCVASNTVASDNHSSNLRVNE 200
SG + C A+NT S N ++ L+V E
Sbjct: 264 SGVFMCYANNTFGSANVTTTLKVVE 288
Score = 96.3 bits (239), Expect = 1e-23
Identities = 37/290 (12%), Positives = 70/290 (24%), Gaps = 73/290 (25%)
Query: 1 SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDV 60
S P + + ++ G +SL CI + W Y + +
Sbjct: 11 SPPSIHPAQSELIVEAGDTLSLTCIDPDF----VRWTFKTYFN-----------EMVENK 55
Query: 61 ISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHS 120
+ +G Y C+ +N + S + + V D + +
Sbjct: 56 KNEWIQEKAEATRTGTYTCSNSNGLTSSIY---VFVRDPA-------KLFLVGLPLFGKE 105
Query: 121 GDRAGVQCLVTKGDPPLTISWLK-NGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNY 179
A V+C +T S ++ +G + +D H
Sbjct: 106 DSDALVRCPLT-DPQVSQYSLIECDGKSLPTDLTFVPNPKA---GITIKNVKRAYHRLCV 161
Query: 180 TCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNV 239
C A + T + S+ L+V
Sbjct: 162 RCAAQR-------------------------------DGTWLHSDKF-------TLKVRE 183
Query: 240 PPHIGPFTFGE-----LMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQP 284
P L +G V C ++ ++ W K
Sbjct: 184 AIKAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHI 233
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth
factor-receptor complex, receptor tyrosine kinase, CY
4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus
musculus}
Length = 289
Score = 122 bits (307), Expect = 3e-33
Identities = 39/284 (13%), Positives = 81/284 (28%), Gaps = 59/284 (20%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVIS 62
P + + ++PG V+L+C++ G+ + W P S
Sbjct: 5 PVIEPSGPELVVEPGETVTLRCVSNGS----VEWDGPISPYWTLD---------PESPGS 51
Query: 63 HVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGD 122
+ + +++G Y+CT + + + + V D ++ + V G
Sbjct: 52 TLTTRNATFKNTGTYRCTELEDPMAGSTTIHLYVKDPA------HSWNLLAQEVTVVEGQ 105
Query: 123 RAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCV 182
A + CL+T ++S ++ G + + S I S Y C
Sbjct: 106 EAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFFSPW---RGFIIRKAKVLDSNTYVCK 162
Query: 183 ASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPH 242
+ + V N PP
Sbjct: 163 TMV---------------------------NGRESTSTGIWLKV-------NRVHPEPPQ 188
Query: 243 I--GPFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQP 284
I P + G Q+ C + ++ ++ + + P
Sbjct: 189 IKLEPSKL-VRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIP 231
Score = 114 bits (287), Expect = 2e-30
Identities = 34/192 (17%), Positives = 63/192 (32%), Gaps = 12/192 (6%)
Query: 12 QTLQPGPPVSLKCIATG-NPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVR 70
T+ G L C+ T +S +G + Y I +
Sbjct: 99 VTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRK---TVYFFSPWRGFI---IRKAK 152
Query: 71 VEDSGIYQCTATNR-VGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCL 129
V DS Y C S + ++V +P + + G+ A + C
Sbjct: 153 VLDSNTYVCKTMVNGRESTSTGIWLKVNRVHPEPPQI---KLEPSKLVRIRGEAAQIVCS 209
Query: 130 VTKGDPPLTISWLKNGLPILSDAEITIRSSG-EYTSSLSIATLSTGHSGNYTCVASNTVA 188
T + + + + + + + +LS+ + +G Y+CVASN V
Sbjct: 210 ATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVG 269
Query: 189 SDNHSSNLRVNE 200
+ + N +V E
Sbjct: 270 TRTATMNFQVVE 281
Score = 73.1 bits (179), Expect = 4e-15
Identities = 19/98 (19%), Positives = 41/98 (41%), Gaps = 1/98 (1%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVIS 62
PQ+ + + G + C AT G + + +
Sbjct: 187 PQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLN-SDFQDNYYKKVR 245
Query: 63 HVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAP 100
+++++V +D+GIY C A+N VG++T + + +V ++
Sbjct: 246 ALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVVESH 283
Score = 68.1 bits (166), Expect = 2e-13
Identities = 21/126 (16%), Positives = 43/126 (34%), Gaps = 5/126 (3%)
Query: 170 TLSTGHSGNYTCVASNTVA---SDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTV 226
+ G + CV++ +V + L S+L+ + ++G Y C
Sbjct: 15 VVEPGETVTLRCVSNGSVEWDGPISPYWTLDPESPGSTLTTRNATFKNTGTYRCTELEDP 74
Query: 227 ASDNHSSNLRVNVPPHIGPFTFGEL--MEGVRTQVACVVQSGDLPLSLQWYKNGLAISQP 284
+ + + +L V P H E+ +EG + C++ L S+ + G
Sbjct: 75 MAGSTTIHLYVKDPAHSWNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLR 134
Query: 285 DISITL 290
Sbjct: 135 KTVYFF 140
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex,
beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo
sapiens}
Length = 339
Score = 120 bits (302), Expect = 4e-32
Identities = 35/208 (16%), Positives = 69/208 (33%), Gaps = 22/208 (10%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKC-------IATGNPTPHISWKLDGYPLAGDRFVMGQYMS 55
+ ++ G PV+L+C A+ +P +++W + M
Sbjct: 19 RFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEE-ETRMW 77
Query: 56 LHGDVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRS 115
+ + EDSG Y CT N S ++RV++ + S
Sbjct: 78 AQDGAL---WLLPALQEDSGTYVCTTRNASYCDKMSIELRVFENTDA-----FLPFISYP 129
Query: 116 IKVHSGDRAGVQCLVT----KGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATL 171
+ + C + + I W K+ L + D E + G T+ L + +
Sbjct: 130 QILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRG--TTHLLVHDV 187
Query: 172 STGHSGNYTCVASNTVASDNHSSNLRVN 199
+ +G Y CV + ++ +
Sbjct: 188 ALEDAGYYRCVLTFAHEGQQYNITRSIE 215
Score = 100 bits (250), Expect = 1e-24
Identities = 37/210 (17%), Positives = 71/210 (33%), Gaps = 27/210 (12%)
Query: 11 QQTLQPGPPVSLKC-----IATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVN 65
Q L L C I W D L D +++S+ G +H+
Sbjct: 129 PQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDN---EKFLSVRGT--THLL 183
Query: 66 ISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVK--LVTSNSRSIKVHSGDR 123
+ V +ED+G Y+C T Q ++ + + ++ ++ S ++I G R
Sbjct: 184 VHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLKTISASLGSR 243
Query: 124 AGVQCLV--TKGDPPLTISWLKNGLPILSDA------------EITIRSSGEYTSSLSIA 169
+ C V G P T+ W + A E + + L
Sbjct: 244 LTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFD 303
Query: 170 TLSTGHSG-NYTCVASNTVASDNHSSNLRV 198
++ ++ CV NT++ + ++
Sbjct: 304 PVTREDLHMDFKCVVHNTLSFQTLRTTVKE 333
Score = 65.5 bits (159), Expect = 2e-12
Identities = 27/127 (21%), Positives = 39/127 (30%), Gaps = 12/127 (9%)
Query: 115 SIKVHSGDRAGVQC------LVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSI 168
G+ ++C L P + ++W KN E R + +L +
Sbjct: 27 REFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMWAQ-DGALWL 85
Query: 169 ATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIA-----TLSTGHSGNYTCVAS 223
SG Y C N D S LRV E T + L+ SG C
Sbjct: 86 LPALQEDSGTYVCTTRNASYCDKMSIELRVFENTDAFLPFISYPQILTLSTSGVLVCPDL 145
Query: 224 NTVASDN 230
+ D
Sbjct: 146 SEFTRDK 152
Score = 65.1 bits (158), Expect = 3e-12
Identities = 18/103 (17%), Positives = 32/103 (31%), Gaps = 13/103 (12%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKC---IATGNPTPHISWKLDGYPL-----AGDRFVMGQYM 54
P +I + G +++ C + TG P + W G R G
Sbjct: 227 PVIISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQ 286
Query: 55 SLHGD----VISHVNISSVRVEDSGI-YQCTATNRVGSQTHSA 92
+ + + V ED + ++C N + QT
Sbjct: 287 EYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQTLRT 329
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion
comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Length = 201
Score = 115 bits (290), Expect = 1e-31
Identities = 38/197 (19%), Positives = 68/197 (34%), Gaps = 23/197 (11%)
Query: 11 QQTLQPGPPVSLKCIATGNPTP--HISWKLDGYPLA----GDRFVMGQYMSLHGDVISHV 64
+ ++ G + L C + W L+ +P+ RFV +L+
Sbjct: 17 EVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNLY------- 69
Query: 65 NISSVRVEDSGIYQCTATNRVGSQTHSADM---RVYDAPGQPQDVKLVTSNSRSIKVHSG 121
I++V D G Y C ++ +++ + + + + G
Sbjct: 70 -IANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMG 128
Query: 122 DRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTC 181
++C G+P I W K P+ S AEI+ + L I + G Y C
Sbjct: 129 QNVTLECFAL-GNPVPDIRWRKVLEPMPSTAEISTSG-----AVLKIFNIQLEDEGIYEC 182
Query: 182 VASNTVASDNHSSNLRV 198
A N D H + + V
Sbjct: 183 EAENIRGKDKHQARIYV 199
Score = 90.7 bits (225), Expect = 3e-22
Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 8/95 (8%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVIS 62
++ +F G V+L+C A GNP P I W+ P+ + L
Sbjct: 114 ADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEISTSGAVLK----- 168
Query: 63 HVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVY 97
I ++++ED GIY+C A N G H A + V
Sbjct: 169 ---IFNIQLEDEGIYECEAENIRGKDKHQARIYVQ 200
Score = 53.4 bits (128), Expect = 1e-08
Identities = 27/186 (14%), Positives = 46/186 (24%), Gaps = 53/186 (28%)
Query: 110 TSNSRSIKVHSGDRAGVQCLVTKGDP-PLTISWLKNGLPILSDAEITIRSSGEYTSSLSI 168
++V G + C P L+ WL N P+ + S
Sbjct: 12 PEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQT------- 64
Query: 169 ATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVAS 228
+L IA + GNY+C S+ +
Sbjct: 65 ---------------------------------NGNLYIANVEASDKGNYSCFVSSPSIT 91
Query: 229 DNHSSNLRVNV----------PPHI-GPFTFGELMEGVRTQVACVVQSGDLPLSLQWYKN 277
+ S + P I F + G + C G+ ++W K
Sbjct: 92 KSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFA-LGNPVPDIRWRKV 150
Query: 278 GLAISQ 283
+
Sbjct: 151 LEPMPS 156
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell
adhesion molecule, immunoglobuline superfamily,
alternative splicing, cell adhesion; 2.19A {Mus
musculus} PDB: 3mj7_B* 2npl_X
Length = 214
Score = 115 bits (290), Expect = 1e-31
Identities = 40/210 (19%), Positives = 62/210 (29%), Gaps = 38/210 (18%)
Query: 17 GPPVSLKCIATGNPTP----HISWKLDG----------------------YPLAGDRFVM 50
G L C T +P I W + YP R
Sbjct: 15 GETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHF 74
Query: 51 GQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVT 110
GD +N++++++ D G YQC G + V P +
Sbjct: 75 TSNDVKSGDA--SINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSGTR------ 126
Query: 111 SNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIAT 170
G+ ++C +G PL W K + + +S+
Sbjct: 127 -CFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMT---SPVISVKN 182
Query: 171 LSTGHSGNYTCVASNTVASDNHSSNLRVNE 200
S+ +SG Y+C N V SD L V
Sbjct: 183 ASSEYSGTYSCTVQNRVGSDQCMLRLDVVP 212
Score = 74.7 bits (183), Expect = 4e-16
Identities = 39/181 (21%), Positives = 61/181 (33%), Gaps = 20/181 (11%)
Query: 109 VTSNSRSIKVHSGDRAGVQCLVT---KGDPPLTISWLKNGLPILSDAEITIRSSGEYTSS 165
+T+ + I+ G+ A + C T + PL I WL + ++ I SG+
Sbjct: 3 ITTPEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGD---- 58
Query: 166 LSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNT 225
I SN V S + +S+++ L G Y C
Sbjct: 59 -KIYDNYYPDLKGRVHFTSNDVKSGD-----------ASINVTNLQLSDIGTYQCKVKKA 106
Query: 226 VASDNHSSNLRVNVPPHIGPFTF-GELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQP 284
N L V V P G G ++ C + G LPL +W K + + P
Sbjct: 107 PGVANKKFLLTVLVKPSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMP 166
Query: 285 D 285
Sbjct: 167 T 167
Score = 67.4 bits (164), Expect = 2e-13
Identities = 22/96 (22%), Positives = 33/96 (34%), Gaps = 9/96 (9%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIAT-GNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVI 61
P F+ + + G LKC G+ W+ ++
Sbjct: 122 PSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPT-------PWLAEMT 174
Query: 62 SHV-NISSVRVEDSGIYQCTATNRVGSQTHSADMRV 96
S V ++ + E SG Y CT NRVGS + V
Sbjct: 175 SPVISVKNASSEYSGTYSCTVQNRVGSDQCMLRLDV 210
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix
bundle cytokine, receptor tyrosine kinase glycosylation;
HET: NAG BMA; 3.00A {Homo sapiens}
Length = 292
Score = 117 bits (295), Expect = 2e-31
Identities = 36/194 (18%), Positives = 66/194 (34%), Gaps = 16/194 (8%)
Query: 12 QTLQPGPPVSLKCIATG-NPTPHISW-KLDGYPL-AGDRFVMGQYMSLHGDVISHVNISS 68
+ L C+ T +S ++ G PL + + I
Sbjct: 99 VVVFEDQDALLPCLLTDPVLEAGVSLVRVRGRPLMRHTNYSFSPWHGFT--------IHR 150
Query: 69 VRVEDSGIYQCTATNRVGSQ-THSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQ 127
+ S YQC+A + S ++V P + T + G+ A +
Sbjct: 151 AKFIQSQDYQCSALMGGRKVMSISIRLKVQKVIPGPPAL---TLVPAELVRIRGEAAQIV 207
Query: 128 CLVTKGDPPLTISWLKNGLPILSDAEITIRSSG-EYTSSLSIATLSTGHSGNYTCVASNT 186
C + D + N + + ++ + +L++ + H+GNY+CVASN
Sbjct: 208 CSASSVDVNFDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNV 267
Query: 187 VASDNHSSNLRVNE 200
+ S RV E
Sbjct: 268 QGKHSTSMFFRVVE 281
Score = 117 bits (294), Expect = 2e-31
Identities = 40/284 (14%), Positives = 84/284 (29%), Gaps = 59/284 (20%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVIS 62
P + + ++PG V+L+C+ G+ + W P + S
Sbjct: 5 PVIEPSVPELVVKPGATVTLRCVGNGS----VEWDGPPSP---------HWTLYSDGSSS 51
Query: 63 HVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGD 122
++ ++ +++G Y+CT + + + V D + ++ + V
Sbjct: 52 ILSTNNATFQNTGTYRCTEPGDPLGGSAAIHLYVKDPA------RPWNVLAQEVVVFEDQ 105
Query: 123 RAGVQCLVTKGDPPLTISWLK-NGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTC 181
A + CL+T +S ++ G P++ + +I S +Y C
Sbjct: 106 DALLPCLLTDPVLEAGVSLVRVRGRPLMRHTNYSFSPWH----GFTIHRAKFIQSQDYQC 161
Query: 182 VASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPP 241
A G + V + PP
Sbjct: 162 SALM---------------------------GGRKVMSISIRLKV-------QKVIPGPP 187
Query: 242 HI-GPFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQP 284
+ + G Q+ C S D+ + N ++ P
Sbjct: 188 ALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIP 231
Score = 75.8 bits (186), Expect = 4e-16
Identities = 20/102 (19%), Positives = 34/102 (33%), Gaps = 7/102 (6%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVIS 62
P L + G + C A+ + + + Q H +
Sbjct: 187 PALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQHN----NTKLAIPQQSDFHNNRYQ 242
Query: 63 HV---NISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPG 101
V N+ V + +G Y C A+N G + S RV ++ G
Sbjct: 243 KVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVVESAG 284
Score = 64.2 bits (156), Expect = 5e-12
Identities = 20/127 (15%), Positives = 42/127 (33%), Gaps = 5/127 (3%)
Query: 170 TLSTGHSGNYTCVASNTVASDNHSS---NLRVNEYTSSLSIATLSTGHSGNYTCVASNTV 226
+ G + CV + +V D S L + +S LS + ++G Y C
Sbjct: 15 VVKPGATVTLRCVGNGSVEWDGPPSPHWTLYSDGSSSILSTNNATFQNTGTYRCTEPGDP 74
Query: 227 ASDNHSSNLRVNVPPHIGPFTFGELM--EGVRTQVACVVQSGDLPLSLQWYKNGLAISQP 284
+ + +L V P E++ E + C++ L + +
Sbjct: 75 LGGSAAIHLYVKDPARPWNVLAQEVVVFEDQDALLPCLLTDPVLEAGVSLVRVRGRPLMR 134
Query: 285 DISITLT 291
+ + +
Sbjct: 135 HTNYSFS 141
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A
{Homo sapiens}
Length = 207
Score = 113 bits (284), Expect = 1e-30
Identities = 25/200 (12%), Positives = 56/200 (28%), Gaps = 18/200 (9%)
Query: 11 QQTLQPGPPVSLKCIATGNPTPHISWKLDGYPL-AGDRFVMGQYMSLHGDVISHVNISSV 69
+ L+ G + +++ + + G ++ M I + + +
Sbjct: 12 VEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKM---HIDRNTGIIEMFMEKL 68
Query: 70 RVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSR-----------SIKV 118
+ ED G Y + + + + ++ + S +V
Sbjct: 69 QDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEV 128
Query: 119 HSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGN 178
++C V I W K+ I D + + +L I S +G
Sbjct: 129 TGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKD---GICTLLITEFSKKDAGI 185
Query: 179 YTCVASNTVASDNHSSNLRV 198
Y + + D L
Sbjct: 186 YEVILKDDRGKDKSRLKLVD 205
Score = 86.5 bits (214), Expect = 1e-20
Identities = 19/173 (10%), Positives = 48/173 (27%), Gaps = 21/173 (12%)
Query: 114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGE-YTSSLSIATLS 172
++++ + K ++++ N I + + + + L
Sbjct: 10 LAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQ 69
Query: 173 TGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHS 232
G YT + A+++ + L + + ++
Sbjct: 70 DEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQ--------------------KEAEFQR 109
Query: 233 SNLRVNVPPHIGPFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQPD 285
PH + E+ + C V + + WYK+ IS +
Sbjct: 110 QEWIRKQGPHFVEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDE 162
Score = 64.6 bits (157), Expect = 1e-12
Identities = 15/87 (17%), Positives = 29/87 (33%), Gaps = 7/87 (8%)
Query: 8 KFIQQTLQPGPPVSLKCIATGNPTP-HISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNI 66
+++ + V LKC HI W D ++ D + + + I
Sbjct: 122 EYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDE-----KHDFKDGICTLL-I 175
Query: 67 SSVRVEDSGIYQCTATNRVGSQTHSAD 93
+ +D+GIY+ + G
Sbjct: 176 TEFSKKDAGIYEVILKDDRGKDKSRLK 202
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane,
glycoprotein, signal, complex (immunoglobulin/receptor);
2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB:
1ira_Y* 4dep_B* 1g0y_R
Length = 315
Score = 112 bits (282), Expect = 2e-29
Identities = 39/210 (18%), Positives = 67/210 (31%), Gaps = 29/210 (13%)
Query: 10 IQQTLQPGPPVSLKC------IATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISH 63
+Q L L C N P + W D PL D + + +I
Sbjct: 111 FKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIH---FSGVKDRLI-- 165
Query: 64 VNISSVRVEDSGIYQCTATNRVGSQTHSADMRVY---DAPGQPQDVKLVTSNSRSIKVHS 120
+ +V + G Y C A+ + + + +P +V+ + +++V
Sbjct: 166 --VMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDL 223
Query: 121 GDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIR-----------SSGEYTSSLSIA 169
G + + C VT G W NG I D + + L+I+
Sbjct: 224 GSQIQLICNVT-GQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNIS 282
Query: 170 TLSTGH-SGNYTCVASNTVASDNHSSNLRV 198
+ + +TC A NT D L
Sbjct: 283 EIESRFYKHPFTCFAKNTHGIDAAYIQLIY 312
Score = 111 bits (279), Expect = 4e-29
Identities = 47/278 (16%), Positives = 73/278 (26%), Gaps = 50/278 (17%)
Query: 16 PGPPVSLKCIATGNPTPH-ISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDS 74
C N I+W D + H + + +VEDS
Sbjct: 19 ANEIDVRPCPLNPNEHKGTITWYKDDSKTPVST-EQASRIHQHKEKLW---FVPAKVEDS 74
Query: 75 GIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVT--- 131
G Y C N + + ++ K+ G+ C
Sbjct: 75 GHYYCVVRNSSYCLRIKISAKFVEN---EPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFF 131
Query: 132 --KGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVAS 189
+ + + W K+ P+L D L + ++ H GNYTC AS T
Sbjct: 132 KNENNELPKLQWYKDCKPLLLDNIHFSGVKD----RLIVMNVAEKHRGNYTCHASYTYLG 187
Query: 190 DNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHI--GPFT 247
+ + T P I
Sbjct: 188 KQYPITRVIEFITLE------------------------------ENKPTRPVIVSPANE 217
Query: 248 FGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQPD 285
E+ G + Q+ C V +G L W NG I + D
Sbjct: 218 TMEVDLGSQIQLICNV-TGQLSDIAYWKWNGSVIDEDD 254
Score = 75.1 bits (184), Expect = 9e-16
Identities = 20/100 (20%), Positives = 35/100 (35%), Gaps = 10/100 (10%)
Query: 3 PQLIYKFIQQ-TLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMS------ 55
P ++ + + G + L C TG + WK +G + D V+G+
Sbjct: 209 PVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPA 268
Query: 56 --LHGDVISHVNISSVRVED-SGIYQCTATNRVGSQTHSA 92
+I+ +NIS + + C A N G
Sbjct: 269 NKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYI 308
>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus,
picornavirus, virus/receptor complex; 15.00A {Homo
sapiens} SCOP: i.6.1.1 PDB: 1dgi_R
Length = 302
Score = 108 bits (271), Expect = 6e-28
Identities = 44/297 (14%), Positives = 77/297 (25%), Gaps = 68/297 (22%)
Query: 11 QQTLQPGPPVSLKCIATGNPTP-----HISWKLDGYPL--------------AGDRFVMG 51
Q G V+L C ++W G R
Sbjct: 9 QVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFV 68
Query: 52 QYMSLHGDVISHVNISSVRVEDSGIYQCTA-TNRVGSQTHSADMRVYDAPGQPQDVKLVT 110
+ + + +RVED G Y C T GS++ +RV P T
Sbjct: 69 AARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKP-------QNT 121
Query: 111 SNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIAT 170
+ + +++ +C+ T G PP I+W + + + +++ SG T
Sbjct: 122 AEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTV------ 175
Query: 171 LSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDN 230
TS + S N TC +
Sbjct: 176 -------------------------------TSLWILVPSSQVDGKNVTCKVEHESFEKP 204
Query: 231 HSSNLRVNV----PPHIGPFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQ 283
+ + V I + + + C +S P W +
Sbjct: 205 QLLTVNLTVYYPPEVSISGYDNNWYLGQNEATLTCDARSNPEPTGYNWSTTMGPLPP 261
Score = 104 bits (260), Expect = 2e-26
Identities = 31/200 (15%), Positives = 59/200 (29%), Gaps = 19/200 (9%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIAT-GNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVI 61
PQ + + L P +C++T G P I+W D + V G V
Sbjct: 118 PQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGT-VTVT 176
Query: 62 SHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRV---YDAPGQPQDVKLVTSNSRSIKV 118
S + D C + + + + Y P +V + ++
Sbjct: 177 SLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYY-----PPEVSISGYDNNWYLG 231
Query: 119 HSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGN 178
+ A + C P +W P+ A + L I + +
Sbjct: 232 --QNEATLTCDARSNPEPTGYNWSTTMGPLPPFAVAQ-------GAQLLIRPVDKPINTT 282
Query: 179 YTCVASNTVASDNHSSNLRV 198
C +N + + ++V
Sbjct: 283 LICNVTNALGARQAELTVQV 302
Score = 59.3 bits (143), Expect = 2e-10
Identities = 30/177 (16%), Positives = 52/177 (29%), Gaps = 28/177 (15%)
Query: 114 RSIKVHSGDRAGVQCLVTKGDPPLT----ISWLKNGLPILSDAEITIRSSGEYTSSLSIA 169
+ GD + C + + +T ++W ++G S+A
Sbjct: 8 TQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESG------------------SMA 49
Query: 170 TLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVA-S 228
+Y+ + + LR +SL + L GNYTC+ S
Sbjct: 50 VFHQTQGPSYSESKRLEFVAARLGAELR----NASLRMFGLRVEDEGNYTCLFVTFPQGS 105
Query: 229 DNHSSNLRVNVPPHIGPFTFGE-LMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQP 284
+ LRV P L CV G P + W+ + +
Sbjct: 106 RSVDIWLRVLAKPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNT 162
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 109 bits (273), Expect = 7e-28
Identities = 35/205 (17%), Positives = 65/205 (31%), Gaps = 23/205 (11%)
Query: 2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVI 61
P L + ++ G V L+C G W L + + + L +
Sbjct: 158 VPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSAT---VMKSGGLPSLGL 214
Query: 62 SHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSG 121
+ N++S + C A N VG S + V ++ +
Sbjct: 215 TLANVTSD--LNRKNVTCWAENDVGRAEVSVQVNVS-----------FPASVQLHTAVEM 261
Query: 122 DRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITI------RSSGEYTSSLSIATLSTGH 175
+ V G P ++ WL NG + + I + L + + +
Sbjct: 262 HHWCIPFSVD-GQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVN 320
Query: 176 SGNYTCVASNTVASDNHSSNLRVNE 200
+GNYT +A+N + S +
Sbjct: 321 NGNYTLLAANPFGQASASIMAAFMD 345
Score = 69.8 bits (170), Expect = 8e-14
Identities = 16/102 (15%), Positives = 31/102 (30%), Gaps = 3/102 (2%)
Query: 2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVI 61
+ T + G P P + W +G L F+ +++ +
Sbjct: 246 NVSFPASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANET 305
Query: 62 ---SHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAP 100
+ ++ ++G Y A N G + S D P
Sbjct: 306 VRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNP 347
Score = 53.6 bits (128), Expect = 2e-08
Identities = 34/245 (13%), Positives = 60/245 (24%), Gaps = 59/245 (24%)
Query: 54 MSLHGDVISHVNISSVRVEDS-------------GIYQCTATNRVGSQTHSADMRVYDAP 100
SL + +++ + + + + + P
Sbjct: 93 ESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQGPLAHMP 152
Query: 101 GQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSG 160
V + + V GD ++C V G W+ L + +
Sbjct: 153 NASCGVPTLKVQVPNASVDVGDDVLLRCQVE-GRGLEQAGWILTELEQSATVMKS----- 206
Query: 161 EYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTC 220
S L + TS L + N TC
Sbjct: 207 ----------------------------GGLPSLGLTLANVTSDL--------NRKNVTC 230
Query: 221 VASNTVASDNHSSNLRVNVPPHIGPFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLA 280
A N V S + V+ P +E + V P SL+W NG
Sbjct: 231 WAENDVGRAEVSVQVNVSFPAS---VQLHTAVEMHHWCIPFSVDGQPAP-SLRWLFNGSV 286
Query: 281 ISQPD 285
+++
Sbjct: 287 LNETS 291
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold,
transmembrane, MHC lipoprotein, polymorphism; 3.90A
{Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3
PDB: 1wip_A 1wiq_A 3t0e_E
Length = 363
Score = 108 bits (270), Expect = 2e-27
Identities = 34/276 (12%), Positives = 66/276 (23%), Gaps = 62/276 (22%)
Query: 11 QQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVR 70
L G ++L + +P + + +++S +
Sbjct: 105 DTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQGG--------------KTLSVSQLE 150
Query: 71 VEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVK------LVTSNSRSIKVHSGDRA 124
++DSG + CT D+ V V + S + V +
Sbjct: 151 LQDSGTWTCTVLQNQKKVEFKIDIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGS 210
Query: 125 GVQCLVTKGDPP----LTISWLKNGLPILS---DAEITIRSSGEYTSSLSIATLSTGHSG 177
G + +T + + D ++ + +L A SG
Sbjct: 211 GELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSG 270
Query: 178 NYTCVASNTVASDNHSSNLRVNEYTSS--------------------------------L 205
N T + NL V T
Sbjct: 271 NLTLALEAKTGKLHQEVNLVVMRATQLQKNLTCEVWGPTSPKLMLSLKLENKEAKVSKRE 330
Query: 206 SIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPP 241
+ +G + C+ S+ S + V P
Sbjct: 331 KAVWVLNPEAGMWQCLLSD---SGQVLLESNIKVLP 363
Score = 101 bits (251), Expect = 8e-25
Identities = 34/244 (13%), Positives = 62/244 (25%), Gaps = 40/244 (16%)
Query: 15 QPGPPVSLKCIATGNPTPHISWKLD---------GYPLAGDRFVMGQYMSLHGDVISHVN 65
+ G V L C A+ + WK G L + + N
Sbjct: 7 KKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGN 66
Query: 66 ----ISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSG 121
I ++++EDS Y C + Q + V+ + G
Sbjct: 67 FPLIIKNLKIEDSDTYICEVED----QKEEVQLLVFGLTANS-----------DTHLLQG 111
Query: 122 DRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTC 181
+ ++ + +LS++ L SG +TC
Sbjct: 112 QSLTLTLESP-PGSSPSVQCRSPRGKNIQG-----------GKTLSVSQLELQDSGTWTC 159
Query: 182 VASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPP 241
++ V + + SI G ++ + TV S L
Sbjct: 160 TVLQNQKKVEFKIDIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAER 219
Query: 242 HIGP 245
Sbjct: 220 ASSS 223
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin
superfamily, integrin-binding, cell adhesion protein;
1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A
1vsc_A
Length = 202
Score = 104 bits (259), Expect = 3e-27
Identities = 42/203 (20%), Positives = 66/203 (32%), Gaps = 23/203 (11%)
Query: 11 QQTLQPGPPVSLKCIATGNPTPHISWKLD-GYPLAGDRFVMGQYMSLHGDVISHVNISSV 69
+ Q G VSL C TG +P SW+ PL G + S + ++ V
Sbjct: 10 RYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKV--------TNEGTTSTLTMNPV 61
Query: 70 RVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCL 129
+ Y CTAT + +Y P P+ S + +G V+C
Sbjct: 62 SFGNEHSYLCTATCESRKLEKGIQVEIYSFPKDPE-------IHLSGPLEAGKPITVKCS 114
Query: 130 VTKGDPP--LTISWLKNGLPILSDA---EITIRSSGEYTSSLSIATLSTGHSGNYTCVAS 184
V P L I LK + S + +S + ++ + C A
Sbjct: 115 VADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAK 174
Query: 185 NTVASDNHSSNLRVNEYTSSLSI 207
+ D S V + L +
Sbjct: 175 LHI--DEMDSVPTVRQAVKELQV 195
Score = 52.5 bits (125), Expect = 2e-08
Identities = 20/111 (18%), Positives = 35/111 (31%), Gaps = 8/111 (7%)
Query: 118 VHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSG 177
GD + C T G SW L+ + TS+L++ +S G+
Sbjct: 13 AQIGDSVSLTCSTT-GCESPFFSWRTQIDSPLNGKVTNEGT----TSTLTMNPVSFGNEH 67
Query: 178 NYTCVASNTVASDNHSSNLRVNEYTSSLSI---ATLSTGHSGNYTCVASNT 225
+Y C A+ + + + I L G C ++
Sbjct: 68 SYLCTATCESRKLEKGIQVEIYSFPKDPEIHLSGPLEAGKPITVKCSVADV 118
Score = 49.0 bits (116), Expect = 3e-07
Identities = 25/133 (18%), Positives = 42/133 (31%), Gaps = 14/133 (10%)
Query: 163 TSSLSIATLSTGHSGNYTCVAS---------NTVASDNHSSNLRVNEYTSSLSIATLSTG 213
T+ S G S + TC + T + + TS+L++ +S G
Sbjct: 5 TTPESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFG 64
Query: 214 HSGNYTCVASNTVASDNHSSNLRVNVPPHIGPFTF-GELMEGVRTQVACVVQSGDLP--- 269
+ +Y C A+ + + P G L G V C V + P
Sbjct: 65 NEHSYLCTATCESRKLEKGIQVEIYSFPKDPEIHLSGPLEAGKPITVKCSV-ADVYPFDR 123
Query: 270 LSLQWYKNGLAIS 282
L + K +
Sbjct: 124 LEIDLLKGDHLMK 136
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil,
immunoglobulin, immune system, extracellular; HET: NAG;
3.10A {Homo sapiens} PDB: 3o4o_B*
Length = 349
Score = 104 bits (261), Expect = 2e-26
Identities = 28/195 (14%), Positives = 62/195 (31%), Gaps = 26/195 (13%)
Query: 22 LKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTA 81
+ + P I+W + Y + V+ + M+L + ++G Y C
Sbjct: 145 VDGYFPSSVKPTITWYMGCYKIQNFNNVIPEGMNLS--------FLIALISNNGNYTCVV 196
Query: 82 T----NRVGSQTHSADMRVYDAPGQPQDVKLVT-SNSRSIKVHSGDRAGVQCLVT---KG 133
T R T + ++V +P + + ++ + G+ + C V
Sbjct: 197 TYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLM 256
Query: 134 DPPLTISWLKNGLPILSD---------AEITIRSSGEYTSSLSIATLSTGH-SGNYTCVA 183
D + W +G + T LSI +++ +Y C A
Sbjct: 257 DSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHA 316
Query: 184 SNTVASDNHSSNLRV 198
+ ++ ++
Sbjct: 317 RSAKGEVAKAAKVKQ 331
Score = 103 bits (257), Expect = 1e-25
Identities = 42/300 (14%), Positives = 73/300 (24%), Gaps = 65/300 (21%)
Query: 17 GPPVSLKCI-----------ATGNPTPHISWKLDGYPLAGDRFVMGQY----MSLHGDVI 61
P +KC + + W + + + +S DV+
Sbjct: 22 DEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVL 81
Query: 62 SHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSG 121
+ D+G Y C N + + V +
Sbjct: 82 ---WFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQ---KDSCFNSPMKLPVHKLYIEY 135
Query: 122 DRAGVQCLVT----KGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSG 177
+ C TI+W I + + +LS ++G
Sbjct: 136 GIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNFNNVIPEG-----MNLSFLIALISNNG 190
Query: 178 NYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRV 237
NYTCV + G + + T + V ++
Sbjct: 191 NYTCVVTYPEN------------------------GRTFHLTRTLTVKVVGSPKNA---- 222
Query: 238 NVPPHIGPF---TFGELMEGVRTQVACVVQ---SGDLPLSLQWYKNGLAISQPDISITLT 291
VPP I E G + C V D + W +G I +T+
Sbjct: 223 -VPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTIN 281
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain,
cytokine decoy RE virus/viral protein, type-1
interferon, soluble A/B-IFNR; HET: EPE; 2.10A
{Ectromelia virus}
Length = 329
Score = 103 bits (257), Expect = 7e-26
Identities = 38/295 (12%), Positives = 64/295 (21%), Gaps = 71/295 (24%)
Query: 12 QTLQPGPPVSLKCIATGNPT---------PHISWKLDGYPLAGDRFVMGQYMSLHGDVIS 62
G P S KC + ++W+ G + +
Sbjct: 39 DMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLN------RRVKNGDLW 92
Query: 63 HVNISSVRVEDSG-IYQCTATNRVGS-QTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHS 120
I++ DS Y CT T + G + P + + H
Sbjct: 93 ---IANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRKPP-------SCIPETYELGTHD 142
Query: 121 GDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYT 180
+ C + I+W KN ++ D +S +L I SG Y
Sbjct: 143 KYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKYSQSGQ----NLIIHNPELEDSGRYD 198
Query: 181 CVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVP 240
C + + L V
Sbjct: 199 CYVHYDDVRIKNDIVVSR---------------------------------CKILTVIPS 225
Query: 241 PHIGPFTFG----ELMEGVRTQVACVVQSG---DLPLSLQWYKNGLAISQPDISI 288
+ G + C S + + W I D +
Sbjct: 226 QDHRFKLILDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGV 280
Score = 101 bits (253), Expect = 3e-25
Identities = 39/207 (18%), Positives = 64/207 (30%), Gaps = 18/207 (8%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKC-IATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVI 61
P I + + + L C I +I+W + L D G S G +
Sbjct: 129 PSCIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIID----GTKYSQSGQNL 184
Query: 62 SHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAP--GQPQDVKLVTSNSRSIKVH 119
I + +EDSG Y C + + QD + I V
Sbjct: 185 I---IHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDPKINVT 241
Query: 120 SGDRAGVQCLVT---KGDPPLTISWLKNGLPIL----SDAEITIRSSGEYTSSLSIATLS 172
G+ A + C + I W I+ I S G ++L ++
Sbjct: 242 IGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVT 301
Query: 173 TGHSGN-YTCVASNTVASDNHSSNLRV 198
+ GN YTC N ++ + +
Sbjct: 302 EEYIGNTYTCRGHNYYFDKTLTTTVVL 328
Score = 57.9 bits (139), Expect = 7e-10
Identities = 18/104 (17%), Positives = 30/104 (28%), Gaps = 5/104 (4%)
Query: 189 SDNHSSNLRVNEYTSSLSIATLSTGHSGN-YTCVASNTVASDNHSS-NLRVNVPPHIGPF 246
N RV L IA ++ S Y C + + PP P
Sbjct: 77 KTRRPLNRRVKN--GDLWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRKPPSCIPE 134
Query: 247 TF-GELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQPDISIT 289
T+ + + C + ++ WYKN + +
Sbjct: 135 TYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKYS 178
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion;
2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 184
Score = 97.8 bits (243), Expect = 4e-25
Identities = 37/198 (18%), Positives = 60/198 (30%), Gaps = 31/198 (15%)
Query: 10 IQQTLQPGPPVSLKCIATGNPTPHIS--WKLDGYPLAGDRFVMGQYMSLHGDVISHVNIS 67
G + L C + T W G L D +
Sbjct: 6 FTTVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPGQKT-----------EFK 54
Query: 68 SVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQ 127
+ G Y C +A+++++ P V + S ++ G+ A +
Sbjct: 55 VDSDDQWGEYSCVFLPEPMG---TANIQLHGPP-------RVKAVKSSEHINEGETAMLV 104
Query: 128 CLVTKGDPPLTISWLKNG------LPILSDAEITIRSSGEYTSSLSIATLS-TGHSGNYT 180
C P +W K L S++ + SS S L I L+ G Y
Sbjct: 105 CKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGR-SELHIENLNMEADPGQYR 163
Query: 181 CVASNTVASDNHSSNLRV 198
C +++ SD LRV
Sbjct: 164 CNGTSSKGSDQAIITLRV 181
Score = 66.6 bits (162), Expect = 2e-13
Identities = 20/98 (20%), Positives = 36/98 (36%), Gaps = 4/98 (4%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNP-TPHISW--KLDGYPLAGDRFVMGQYMSLHGD 59
P++ + + G L C + P +W D A ++
Sbjct: 84 PRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQ 143
Query: 60 VISHVNISSVRVE-DSGIYQCTATNRVGSQTHSADMRV 96
S ++I ++ +E D G Y+C T+ GS +RV
Sbjct: 144 GRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRV 181
Score = 53.1 bits (127), Expect = 8e-09
Identities = 15/107 (14%), Positives = 29/107 (27%), Gaps = 9/107 (8%)
Query: 118 VHSGDRAGVQCLVTKGDPPLT-ISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHS 176
G + + C + +T WLK G+ + + S
Sbjct: 10 EDLGSKILLTCSLNDSATEVTGHRWLKGGVVL--------KEDALPGQKTEFKVDSDDQW 61
Query: 177 GNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVAS 223
G Y+CV + + S ++ G + C +
Sbjct: 62 GEYSCVFLPEPMGTANIQLHGPPRVKAVKSSEHINEGETAMLVCKSE 108
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system;
HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Length = 262
Score = 98.1 bits (244), Expect = 2e-24
Identities = 29/200 (14%), Positives = 61/200 (30%), Gaps = 31/200 (15%)
Query: 1 SHPQLIYKFIQQTLQPGPPVSLKCIATGN-PTPHISWKLDGYPLAGDRFVMGQYMSLHGD 59
L+ + + G P++L+C A + ++ + +G +
Sbjct: 81 HRGWLLLQVSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFFHWN---------- 130
Query: 60 VISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVH 119
S++ I + +G Y C+ + + + V + P V + S + +
Sbjct: 131 --SNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKELFPAP-----VLNASVTSPLL 183
Query: 120 SGDRAGVQCLVT----KGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGH 175
G+ + C + L S+ + +S I T
Sbjct: 184 EGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTL---------RGRNTSSEYQILTARRED 234
Query: 176 SGNYTCVASNTVASDNHSSN 195
SG Y C A+ + S
Sbjct: 235 SGLYWCEAATEDGNVLKRSP 254
Score = 93.1 bits (231), Expect = 2e-22
Identities = 39/288 (13%), Positives = 70/288 (24%), Gaps = 80/288 (27%)
Query: 12 QTLQPGPPVSLKCIATGNPTPH-ISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVR 70
++ V+L C P W L+G I+S
Sbjct: 11 VSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTST--------------PSYRITSAS 56
Query: 71 VEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLV 130
V DSG Y+C S + ++ + S G+ ++C
Sbjct: 57 VNDSGEYRCQRGLSGRSD--PIQLEIHRGW--------LLLQVSSRVFTEGEPLALRCHA 106
Query: 131 TKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASD 190
K + + +NG
Sbjct: 107 WKDKLVYNVLYYRNGKAF------------------------------------------ 124
Query: 191 NHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGPFT--- 247
+ + S+L+I + H+G Y C + ++ V
Sbjct: 125 ------KFFHWNSNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKELFPAPVLNASV 178
Query: 248 FGELMEGVRTQVACVV----QSGDLPLSLQWYKNGLAISQPDISITLT 291
L+EG ++C Q L L +Y + + S
Sbjct: 179 TSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGRNTSSEYQ 226
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 100
Score = 93.2 bits (232), Expect = 3e-24
Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 10/99 (10%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGD--RFVMGQYMSLHGDV 60
P ++ QTL LKC ATG+P P ISW +G+ G R + + +L
Sbjct: 9 PIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQGTLQ--- 65
Query: 61 ISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDA 99
I ++R+ D+G Y C AT+ G + SA + V ++
Sbjct: 66 -----IKNLRISDTGTYTCVATSSSGETSWSAVLDVTES 99
Score = 68.6 bits (168), Expect = 5e-15
Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 6/88 (6%)
Query: 114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAE-ITIRSSGEYTSSLSIATLS 172
+ + A ++C T GDP ISWLK G TI+ G +L I L
Sbjct: 16 ANQTLAVDGTALLKCKAT-GDPLPVISWLKEGFTFPGRDPRATIQEQG----TLQIKNLR 70
Query: 173 TGHSGNYTCVASNTVASDNHSSNLRVNE 200
+G YTCVA+++ + S+ L V E
Sbjct: 71 ISDTGTYTCVATSSSGETSWSAVLDVTE 98
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A*
1qa9_A
Length = 182
Score = 95.3 bits (237), Expect = 3e-24
Identities = 24/193 (12%), Positives = 57/193 (29%), Gaps = 34/193 (17%)
Query: 17 GPPVSLKC--IATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVN-----ISSV 69
G ++L + I W+ +F + D I +
Sbjct: 14 GQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHL 73
Query: 70 RVEDSGIYQCTATNRVGSQTHSADM--RVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQ 127
+ +D IY+ + + G ++ + +P+ ++ + +
Sbjct: 74 KTDDQDIYKVSIYDTKGKNVLEKIFDLKIQERVSKPK----ISWTCINTTLT-------- 121
Query: 128 CLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTV 187
C V G P ++ ++G + + +T S + C A N V
Sbjct: 122 CEVMNGTDP-ELNLYQDGKHLKLSQRVITHK------------WTTSLSAKFKCTAGNKV 168
Query: 188 ASDNHSSNLRVNE 200
+ ++ + E
Sbjct: 169 SKESSVEPVSCPE 181
Score = 53.0 bits (127), Expect = 1e-08
Identities = 22/158 (13%), Positives = 36/158 (22%), Gaps = 50/158 (31%)
Query: 131 TKGDPPLTISWLKNG----LPILSDAEITIRSSGEYT----SSLSIATLSTGHSGNYTCV 182
D I W K + + T + Y +L I L T Y
Sbjct: 25 QMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKTDDQDIYKVS 84
Query: 183 ASNTVASDNHSSNLRVNEY----------------------------------------T 202
+T + + +
Sbjct: 85 IYDTKGKNVLEKIFDLKIQERVSKPKISWTCINTTLTCEVMNGTDPELNLYQDGKHLKLS 144
Query: 203 SSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVP 240
+ +T S + C A N V+ + SS V+ P
Sbjct: 145 QRVITHKWTTSLSAKFKCTAGNKVSKE--SSVEPVSCP 180
Score = 47.6 bits (113), Expect = 7e-07
Identities = 21/121 (17%), Positives = 40/121 (33%), Gaps = 8/121 (6%)
Query: 175 HSGNYTCVASNTVASDNHSSNLRVNEYTS-SLSIATLSTGHSGNYTCVASNTVASDNHSS 233
+ + +A + + + +L I L T Y +T +
Sbjct: 37 KTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKTDDQDIYKVSIYDTKGKNVLEK 96
Query: 234 NLRVNVPPHI-GPFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNG--LAISQPDISITL 290
+ + + P + T + C V +G P L Y++G L +SQ I+
Sbjct: 97 IFDLKIQERVSKPKIS---WTCINTTLTCEVMNGTDP-ELNLYQDGKHLKLSQRVITHKW 152
Query: 291 T 291
T
Sbjct: 153 T 153
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region
plasiticity, cell adhesion; HET: PG6; 2.50A {Homo
sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A
Length = 331
Score = 98.7 bits (245), Expect = 4e-24
Identities = 26/190 (13%), Positives = 51/190 (26%), Gaps = 15/190 (7%)
Query: 12 QTLQPGPPVSLKCI-ATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVR 70
+ Q + C A G P +SW+ A + + ++ VIS + R
Sbjct: 145 KKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVT--VISRYRLVPSR 202
Query: 71 VEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLV 130
C + S + V P ++ + C
Sbjct: 203 EAHQQSLACIVNYHMDRFKESLTLNVQYEP------EVTIEGFDGNWYLQRMDVKLTCKA 256
Query: 131 TKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASD 190
P W + E + ++ +G Y C A+N + +
Sbjct: 257 DANPPATEYHWTTLNGSLPKGVEAQ------NRTLFFKGPINYSLAGTYICEATNPIGTR 310
Query: 191 NHSSNLRVNE 200
+ + + E
Sbjct: 311 SGQVEVNITE 320
Score = 94.0 bits (233), Expect = 2e-22
Identities = 39/298 (13%), Positives = 75/298 (25%), Gaps = 61/298 (20%)
Query: 11 QQTLQPGPPVSLKCIATGNPTP----HISWKLDGYPLAGDRFVMGQYMSLH--------- 57
G V L C ++W+ + + M +
Sbjct: 23 SMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERV 82
Query: 58 -----GDVISHVNISSVRVEDSGIYQCTA-TNRVGSQTHSADMRVYDAPGQPQDVKLVTS 111
+ +S + +ED G+Y C T G++ ++ V P ++ +
Sbjct: 83 EFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTNW--IEGTQA 140
Query: 112 NSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATL 171
R+ K C G PP +SW EI +G T
Sbjct: 141 VLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIR-NPNGTVTV------- 192
Query: 172 STGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNH 231
S + H + C+ + +
Sbjct: 193 ------------------------------ISRYRLVPSREAHQQSLACIVNYHMDRFKE 222
Query: 232 SSNLRVNVPP--HIGPFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQPDIS 287
S L V P I F ++ + ++ C + W ++ + +
Sbjct: 223 SLTLNVQYEPEVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKGVEA 280
Score = 64.8 bits (157), Expect = 3e-12
Identities = 16/91 (17%), Positives = 28/91 (30%), Gaps = 10/91 (10%)
Query: 11 QQTLQPGPPVSLKCIATGNPTPH-ISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSV 69
V L C A NP W L + + +
Sbjct: 241 GNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKGVEAQNR---------TLFFKGPI 291
Query: 70 RVEDSGIYQCTATNRVGSQTHSADMRVYDAP 100
+G Y C ATN +G+++ ++ + +A
Sbjct: 292 NYSLAGTYICEATNPIGTRSGQVEVNITEAA 322
Score = 49.0 bits (116), Expect = 7e-07
Identities = 25/182 (13%), Positives = 45/182 (24%), Gaps = 32/182 (17%)
Query: 113 SRSIKVHSGDRAGVQCLVTKGDPP---LTISWLKNGLPILSDAEITIRSSGEYTSSLSIA 169
+ S+ G + C P ++W K+ + I S G
Sbjct: 21 NDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGV-------- 72
Query: 170 TLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTC-VASNTVAS 228
S LR + ++ ++ L G Y C A+ +
Sbjct: 73 --------------SVLAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGN 118
Query: 229 DNHSSNLRVNVPPHIGPF------TFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAIS 282
NL V P + + C +G P + W +
Sbjct: 119 RESQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEA 178
Query: 283 QP 284
+
Sbjct: 179 EY 180
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein
complex, growth factor-receptor complex, TRA hormone
complex; HET: NDG NAG; 2.30A {Homo sapiens}
Length = 289
Score = 97.5 bits (242), Expect = 7e-24
Identities = 26/190 (13%), Positives = 49/190 (25%), Gaps = 23/190 (12%)
Query: 13 TLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVE 72
L +++ C T P ++ + V +
Sbjct: 106 FLTEITEITIPCRVTD-PQLVVTLHEKKGDV-------------ALPVPYDHQRGFSGIF 151
Query: 73 DSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTK 132
+ Y C T A V+ N+ V G+ + C+V
Sbjct: 152 EDRSYICKTTIGDREVDSDAYYVYRLQVSSIN----VSVNAVQTVVRQGENITLMCIVI- 206
Query: 133 GDPPLTISWLKNG----LPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVA 188
G+ + W + + + S L I + SG YTC + +V
Sbjct: 207 GNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVN 266
Query: 189 SDNHSSNLRV 198
+ +
Sbjct: 267 DHQDEKAINI 276
Score = 88.6 bits (219), Expect = 1e-20
Identities = 28/284 (9%), Positives = 67/284 (23%), Gaps = 67/284 (23%)
Query: 11 QQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVR 70
+ L L C + + W+ + + G S + ++++
Sbjct: 9 ELVLNVSSTFVLTCSGSAP----VVWERMSQEPPQEMAK-----AQDGTFSSVLTLTNLT 59
Query: 71 VEDSGIYQCTATNRVGS-QTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCL 129
D+G Y CT + G + ++ P + I + + C
Sbjct: 60 GLDTGEYFCTHNDSRGLETDERKRLYIF-VPDPTVGFLPNDAEELFIFLTEITEITIPCR 118
Query: 130 VTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVAS 189
VT DP L ++ + +
Sbjct: 119 VT--DPQLVVTLHEKKGDVAL--------------------------------------- 137
Query: 190 DNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGPFTFG 249
+Y C + + + + +
Sbjct: 138 ----------PVPYDHQRGFSGIFEDRSYICKTTIGDREVDSDAYYVYRLQVSSINVSVN 187
Query: 250 ----ELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQPDISIT 289
+ +G + C+V G+ ++ +W + +T
Sbjct: 188 AVQTVVRQGENITLMCIV-IGNEVVNFEWTYPRKESGRLVEPVT 230
Score = 68.2 bits (166), Expect = 2e-13
Identities = 20/96 (20%), Positives = 35/96 (36%), Gaps = 1/96 (1%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPL-AGDRFVMGQYMSLHGDVI 61
+ +Q ++ G ++L CI GN + W V + + +
Sbjct: 182 INVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIR 241
Query: 62 SHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVY 97
S ++I S +EDSG Y C T V + +
Sbjct: 242 SILHIPSAELEDSGTYTCNVTESVNDHQDEKAINIT 277
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral
protein-immune system compl; HET: NAG SUC; 1.99A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B*
2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C*
3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A
3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Length = 184
Score = 94.3 bits (234), Expect = 1e-23
Identities = 26/197 (13%), Positives = 51/197 (25%), Gaps = 40/197 (20%)
Query: 15 QPGPPVSLKCIATGNPTPHISWKLDGYPL---AGDRFVMGQYMSLHGDVISHVN------ 65
+ G V L C A+ + WK F+ L+ S +
Sbjct: 8 KKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGN 67
Query: 66 ----ISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSG 121
I ++++EDS Y C ++ + V+ + G
Sbjct: 68 FPLIIKNLKIEDSDTYICEVEDQKEE----VQLLVFGLTANS-----------DTHLLQG 112
Query: 122 DRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTC 181
+ ++ + +LS++ L SG +TC
Sbjct: 113 QSLTLTLESP-PGSSPSVQCRSPRGKNIQG-----------GKTLSVSQLELQDSGTWTC 160
Query: 182 VASNTVASDNHSSNLRV 198
++ V
Sbjct: 161 TVLQNQKKVEFKIDIVV 177
Score = 65.8 bits (160), Expect = 3e-13
Identities = 14/90 (15%), Positives = 30/90 (33%), Gaps = 16/90 (17%)
Query: 12 QTLQPGPPVSLKCIATGNPTPHISWKL-DGYPLAGDRFVMGQYMSLHGDVISHVNISSVR 70
L G ++L + +P + + G + G + +++S +
Sbjct: 107 THLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQGGK---------------TLSVSQLE 151
Query: 71 VEDSGIYQCTATNRVGSQTHSADMRVYDAP 100
++DSG + CT D+ V
Sbjct: 152 LQDSGTWTCTVLQNQKKVEFKIDIVVLAFQ 181
Score = 43.8 bits (103), Expect = 1e-05
Identities = 19/172 (11%), Positives = 42/172 (24%), Gaps = 34/172 (19%)
Query: 121 GDRAGVQCLVTKGDPPLTISWLKNG-LPILSDAEITIRSSGEYTSSLSIATLSTGHSGNY 179
GD + C + + W + + IL + + + + + S GN+
Sbjct: 10 GDTVELTCTAS-QKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNF 68
Query: 180 TCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNV 239
+ N D S Y C + +
Sbjct: 69 PLIIKNLKIED------------------------SDTYICEVEDQKEEV-QLLVFGLTA 103
Query: 240 PPHIGPFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQPDISITLT 291
L++G + S+Q Q +++++
Sbjct: 104 NSDT------HLLQGQSLTLTLES-PPGSSPSVQCRSPRGKNIQGGKTLSVS 148
>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon,
OKT3 FAB, signaling protein/antibiotic complex; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*
Length = 204
Score = 94.2 bits (233), Expect = 2e-23
Identities = 40/199 (20%), Positives = 56/199 (28%), Gaps = 38/199 (19%)
Query: 15 QPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDS 74
Q V L C +I+W DG + + N+ S +
Sbjct: 16 QEDGSVLLTC---DAEAKNITWFKDGKMI-----------GFLTEDKKKWNLGSNAKDPR 61
Query: 75 GIYQCTATNRVGSQTH------SADMRVYDA-------------PGQPQDVKLVTSNSRS 115
G+YQC + SAD DA G + ++
Sbjct: 62 GMYQCKGSQNKSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTP 121
Query: 116 IKVH-SGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTG 174
KV SG + C P I W N I D + S E SL +
Sbjct: 122 YKVSISGTTVILTCPQ---YPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFS-ELE 177
Query: 175 HSGNYTCVASNTVASDNHS 193
SG Y C + D +
Sbjct: 178 QSGYYVCYPRGSKPEDANF 196
Score = 53.4 bits (127), Expect = 1e-08
Identities = 26/163 (15%), Positives = 41/163 (25%), Gaps = 26/163 (15%)
Query: 121 GDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYT 180
+ C I+W K+G I E ++ + + G Y
Sbjct: 18 DGSVLLTC----DAEAKNITWFKDGKM--------IGFLTEDKKKWNLGSNAKDPRGMYQ 65
Query: 181 CVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVP 240
C S N S L+V S A + + SD +
Sbjct: 66 CKGSQ-----NKSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEE------M 114
Query: 241 PHIGPFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQ 283
I + + G + C G + W N I
Sbjct: 115 GGITQTPYKVSISGTTVILTCPQYPGS---EILWQHNDKNIGG 154
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin,
actin-associated scaffold, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 110
Score = 89.3 bits (222), Expect = 1e-22
Identities = 32/101 (31%), Positives = 47/101 (46%), Gaps = 3/101 (2%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVIS 62
P + T+Q G + C +G PTP +SW+LDG P+ D M + + +
Sbjct: 10 PHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAH---KMLVRENGVH 66
Query: 63 HVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQP 103
+ I V D+GIY C ATNR G + S ++ V P
Sbjct: 67 SLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAKESGP 107
Score = 71.2 bits (175), Expect = 6e-16
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
Query: 114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLST 173
+ V G + C V+ G P +SW +G P+ D+ + SL I +++
Sbjct: 17 GDLTVQEGKLCRMDCKVS-GLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTS 75
Query: 174 GHSGNYTCVASNTVASDNHSSNLRVNEYTSS 204
+G YTC+A+N ++ S L V S
Sbjct: 76 RDAGIYTCIATNRAGQNSFSLELVVAAKESG 106
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling
protein complex, angiogenesis, glycoprotein, HOST-virus
interaction, membrane; HET: NAG BMA; 2.70A {Homo
sapiens} PDB: 2x1x_R*
Length = 213
Score = 91.4 bits (226), Expect = 2e-22
Identities = 32/196 (16%), Positives = 70/196 (35%), Gaps = 16/196 (8%)
Query: 13 TLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVE 72
T V + C+ + ++S ++ + + D I S +
Sbjct: 20 TENKNKTVVIPCLGS-ISNLNVSLCARY----PEKRFVPDGNRISWDSKKGFTIPSYMIS 74
Query: 73 DSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVT- 131
+G+ C A S + V +V S S I++ G++ + C
Sbjct: 75 YAGMVFCEAKINDESYQSIMYIVVVVGYRIY---DVVLSPSHGIELSVGEKLVLNCTART 131
Query: 132 KGDPPLTISWLKNGLPILSDAEI-------TIRSSGEYTSSLSIATLSTGHSGNYTCVAS 184
+ + + +W + + ++ S+L+I ++ G YTC AS
Sbjct: 132 ELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAAS 191
Query: 185 NTVASDNHSSNLRVNE 200
+ + + +S+ +RV+E
Sbjct: 192 SGLMTKKNSTFVRVHE 207
Score = 68.3 bits (166), Expect = 7e-14
Identities = 19/98 (19%), Positives = 37/98 (37%), Gaps = 6/98 (6%)
Query: 13 TLQPGPPVSLKCIATGNPTP--HISWKLDGYPLAGDRFVMGQYMSLHGDVISHVN----I 66
L G + L C A +W+ + V + G + I
Sbjct: 116 ELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTI 175
Query: 67 SSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQ 104
V D G+Y C A++ + ++ +S +RV++ P + +
Sbjct: 176 DGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEDPIEGR 213
Score = 46.3 bits (109), Expect = 2e-06
Identities = 16/115 (13%), Positives = 31/115 (26%), Gaps = 10/115 (8%)
Query: 116 IKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGH 175
I + + CL + + +++ + D S + +I + +
Sbjct: 19 ITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSKK---GFTIPSYMISY 75
Query: 176 SGNYTCVASNTVASDNHSSNLRVNEYTSSLSI-------ATLSTGHSGNYTCVAS 223
+G C A S + V + LS G C A
Sbjct: 76 AGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTAR 130
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain,
cell adhesion, cell junction, glycoprotein,
immunoglobulin domain, membrane; HET: NAG FUC; 2.19A
{Mus musculus} PDB: 3mj7_A* 3mj9_A*
Length = 268
Score = 92.6 bits (229), Expect = 2e-22
Identities = 40/260 (15%), Positives = 76/260 (29%), Gaps = 47/260 (18%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCI---ATGNPTPHISWKLDGYPLAGDRFVMGQY------ 53
P L Q + G V + C+ + W +V+ Y
Sbjct: 6 PGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVP 65
Query: 54 -------MSLHGDVISH---VNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQP 103
L GD + + + V+ D GIY C + S + ++ P +P
Sbjct: 66 TGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLPEEP 125
Query: 104 QDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPP--LTISWLKNGLPILSDAEITIRSSGE 161
+D++ V GD ++C + + ++W+ + + + S
Sbjct: 126 RDLR----------VRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNM 175
Query: 162 YTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCV 221
+ S G N + + +D S+ + T+ G YTC
Sbjct: 176 RSGKFQ----SLGRFRNRVDLTGDISRND------------GSIKLQTVKESDQGIYTCS 219
Query: 222 ASNTVASDNHSSNLRVNVPP 241
+ L V
Sbjct: 220 IYVGKLESRKTIVLHVVQDE 239
Score = 62.6 bits (151), Expect = 1e-11
Identities = 32/187 (17%), Positives = 66/187 (35%), Gaps = 26/187 (13%)
Query: 109 VTSNSRSIKVHSGDRAGVQCLV--TKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSL 166
+T +S ++VH G+ + C+V T+ + WL + + + S
Sbjct: 8 LTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNL----- 62
Query: 167 SIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTV 226
++ TG N + + +T +D SL + + G YTC
Sbjct: 63 ---SVPTGRFQNRSHLVGDTFHND------------GSLLLQDVQKADEGIYTCEIRLKN 107
Query: 227 ASDNHSSNLRVNVPPHIGPFTFGELMEGVRTQVACVVQSGDLP--LSLQWYKNGLAISQP 284
S + + V P + G TQ+ C +QS + + W + + ++
Sbjct: 108 ESMVMKKPVELWVLPEEPRDL--RVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEE 165
Query: 285 DISITLT 291
+ ++
Sbjct: 166 ETVLSYD 172
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor,
CD32, immunoglobulin superfamily, low responder
polymorphism, cell membrane; HET: NAG; 1.50A {Homo
sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C*
2fcb_A
Length = 170
Score = 89.5 bits (222), Expect = 4e-22
Identities = 27/175 (15%), Positives = 49/175 (28%), Gaps = 34/175 (19%)
Query: 12 QTLQPGPPVSLKCIATGNPTPH-ISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVR 70
+ V+L C +P I W +G +
Sbjct: 14 INVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHT--------------QPSYRFKAN 59
Query: 71 VEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLV 130
DSG Y C S + V + + ++ G+ ++C
Sbjct: 60 NNDSGEYTCQTGQTSLSD--PVHLTVLFEW--------LVLQTPHLEFQEGETIMLRCHS 109
Query: 131 TKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASN 185
K P + +++ +NG + SI + HSG+Y C +
Sbjct: 110 WKDKPLVKVTFFQNGKSQ---------KFSHLDPTFSIPQANHSHSGDYHCTGNI 155
Score = 63.3 bits (154), Expect = 2e-12
Identities = 27/183 (14%), Positives = 44/183 (24%), Gaps = 52/183 (28%)
Query: 109 VTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSI 168
+ I V D + C + +I W NG I +
Sbjct: 7 LKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTH----------------- 49
Query: 169 ATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVAS 228
T + SG YTC T S
Sbjct: 50 ---------------------------------TQPSYRFKANNNDSGEYTCQTGQTSLS 76
Query: 229 DNHSSNLRVNVPPHIGPFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQPDISI 288
D +L V + E EG + C + + +++NG + +
Sbjct: 77 D--PVHLTVLFEWLVLQTPHLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKFSHLDP 134
Query: 289 TLT 291
T +
Sbjct: 135 TFS 137
Score = 49.4 bits (118), Expect = 2e-07
Identities = 13/80 (16%), Positives = 23/80 (28%), Gaps = 13/80 (16%)
Query: 11 QQTLQPGPPVSLKCIATGNPTPH-ISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSV 69
Q G + L+C + + +++ +G H D +I
Sbjct: 94 HLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQK----------FSHLD--PTFSIPQA 141
Query: 70 RVEDSGIYQCTATNRVGSQT 89
SG Y CT +
Sbjct: 142 NHSHSGDYHCTGNIGYTLFS 161
>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding,
disease MU ectodermal dysplasia, glycoprotein,
heparin-binding, immuno domain, kinase; 1.96A {Homo
sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A
Length = 100
Score = 87.1 bits (216), Expect = 5e-22
Identities = 21/85 (24%), Positives = 32/85 (37%), Gaps = 3/85 (3%)
Query: 12 QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRV 71
+ V +C A GNP P + W +G + + G + + + SV
Sbjct: 18 HAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLI---MESVVP 74
Query: 72 EDSGIYQCTATNRVGSQTHSADMRV 96
D G Y C N GS H+ + V
Sbjct: 75 SDKGNYTCVVENEYGSINHTYHLDV 99
Score = 81.0 bits (200), Expect = 1e-19
Identities = 27/96 (28%), Positives = 38/96 (39%), Gaps = 1/96 (1%)
Query: 103 PQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEY 162
P R V + + +C G+P T+ WLKNG + I
Sbjct: 5 PYWTNTEKMEKRLHAVPAANTVKFRCPAG-GNPMPTMRWLKNGKEFKQEHRIGGYKVRNQ 63
Query: 163 TSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRV 198
SL + ++ GNYTCV N S NH+ +L V
Sbjct: 64 HWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 99
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit;
immunoglobulin fold, glycoprotein, IGE-binding Pro
immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP:
b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A*
1j88_A* 1j89_A* 1j87_A*
Length = 176
Score = 88.0 bits (218), Expect = 2e-21
Identities = 31/191 (16%), Positives = 55/191 (28%), Gaps = 35/191 (18%)
Query: 12 QTLQPGPPVSLKCIATGNPTPH-ISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVR 70
+ G V+L C W +G S +NI + +
Sbjct: 14 NRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEETN--------------SSLNIVNAK 59
Query: 71 VEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLV 130
EDSG Y+C S + V+ + + + V G ++C
Sbjct: 60 FEDSGEYKCQHQQVNES--EPVYLEVFSDW--------LLLQASAEVVMEGQPLFLRCHG 109
Query: 131 TKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASD 190
+ + + K+G + E ++SI + SG Y C
Sbjct: 110 WRNWDVYKVIYYKDGEALKYWYE---------NHNISITNATVEDSGTYYCTGKVWQLDY 160
Query: 191 N-HSSNLRVNE 200
N+ V +
Sbjct: 161 ESEPLNITVIK 171
Score = 56.4 bits (136), Expect = 6e-10
Identities = 27/183 (14%), Positives = 46/183 (25%), Gaps = 52/183 (28%)
Query: 109 VTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSI 168
V+ N ++ G+ + C + W NG
Sbjct: 7 VSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLS-------------------- 46
Query: 169 ATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVAS 228
E SSL+I SG Y C S
Sbjct: 47 ------------------------------EETNSSLNIVNAKFEDSGEYKCQHQQVNES 76
Query: 229 DNHSSNLRVNVPPHIGPFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQPDISI 288
+ L V + + +MEG + C + +YK+G A+ +
Sbjct: 77 E--PVYLEVFSDWLLLQASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWYENH 134
Query: 289 TLT 291
++
Sbjct: 135 NIS 137
Score = 48.7 bits (116), Expect = 3e-07
Identities = 20/91 (21%), Positives = 33/91 (36%), Gaps = 14/91 (15%)
Query: 12 QTLQPGPPVSLKCIATGN-PTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVR 70
+ + G P+ L+C N + + DG L + ++ I++
Sbjct: 95 EVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALK----YWYENHNIS--------ITNAT 142
Query: 71 VEDSGIYQCTATNRVGSQT-HSADMRVYDAP 100
VEDSG Y CT ++ V AP
Sbjct: 143 VEDSGTYYCTGKVWQLDYESEPLNITVIKAP 173
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing,
ATP-binding, calcium, calmodulin-binding,
cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A
2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Length = 100
Score = 85.8 bits (213), Expect = 2e-21
Identities = 20/94 (21%), Positives = 45/94 (47%), Gaps = 2/94 (2%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVIS 62
P++ ++ G +++ C TG PTP ++W G + G++ + D ++
Sbjct: 6 PKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQ--GRFHIENTDDLT 63
Query: 63 HVNISSVRVEDSGIYQCTATNRVGSQTHSADMRV 96
+ I V+ +D G+Y + N GS + + ++ +
Sbjct: 64 TLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHI 97
Score = 71.6 bits (176), Expect = 3e-16
Identities = 25/102 (24%), Positives = 44/102 (43%), Gaps = 7/102 (6%)
Query: 99 APGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAE--ITI 156
PG P ++ + S+ I + G V C T G+P ++W G I S + I
Sbjct: 1 GPGIPPKIEALPSD---ISIDEGKVLTVACAFT-GEPTPEVTWSCGGRKIHSQEQGRFHI 56
Query: 157 RSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRV 198
++ + ++L I + G YT N SD+ + N+ +
Sbjct: 57 ENTDD-LTTLIIMDVQKQDGGLYTLSLGNEFGSDSATVNIHI 97
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2,
angiogenesis, ATP-binding, developmental protein,
differentiation, glycoprotein; 2.70A {Homo sapiens}
Length = 108
Score = 85.9 bits (213), Expect = 2e-21
Identities = 28/103 (27%), Positives = 39/103 (37%), Gaps = 10/103 (9%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPL-AGDRFVMGQ-YMSLHGDV 60
P + QT G + + C A+GNP P I W D L V+ +L
Sbjct: 11 PTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLT--- 67
Query: 61 ISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQP 103
I VR ED G+Y C A + +G A + A +
Sbjct: 68 -----IRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQEKT 105
Score = 74.3 bits (183), Expect = 4e-17
Identities = 18/87 (20%), Positives = 35/87 (40%), Gaps = 4/87 (4%)
Query: 114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLST 173
+ G+ V C + G+PP I W K+ ++ D+ I ++ +L+I +
Sbjct: 18 ENQTTSIGESIEVSCTAS-GNPPPQIMWFKDNETLVEDSGIVLKDGN---RNLTIRRVRK 73
Query: 174 GHSGNYTCVASNTVASDNHSSNLRVNE 200
G YTC A + + + +
Sbjct: 74 EDEGLYTCQACSVLGCAKVEAFFIIEG 100
Score = 31.2 bits (71), Expect = 0.12
Identities = 13/58 (22%), Positives = 23/58 (39%), Gaps = 3/58 (5%)
Query: 234 NLRVNVPPHI-GPFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQ-PDISIT 289
+ V P I G G +V+C SG+ P + W+K+ + + I +
Sbjct: 4 TVLERVAPTITGNLENQTTSIGESIEVSCTA-SGNPPPQIMWFKDNETLVEDSGIVLK 60
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex,
alternative splicing, ATP-binding, calcium,
calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens}
PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Length = 107
Score = 84.7 bits (210), Expect = 5e-21
Identities = 26/104 (25%), Positives = 40/104 (38%), Gaps = 12/104 (11%)
Query: 1 SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPL-AGDRFVM---GQYMSL 56
S P + + G LKC+ G P P + W+ G L A +R G L
Sbjct: 12 SPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGL 71
Query: 57 HGDVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAP 100
+++ D+G+Y C A N G +A + V + P
Sbjct: 72 L--------LTAALPTDAGVYVCRARNAAGEAYAAAAVTVLEPP 107
Score = 74.0 bits (182), Expect = 5e-17
Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 2/87 (2%)
Query: 114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLST 173
R ++V SG A ++C+V G+PP + W K G + + ++ + G L +
Sbjct: 21 RPVRVVSGAEAELKCVVL-GEPPPVVVWEKGGQQLAASERLSFPADGA-EHGLLLTAALP 78
Query: 174 GHSGNYTCVASNTVASDNHSSNLRVNE 200
+G Y C A N ++ + V E
Sbjct: 79 TDAGVYVCRARNAAGEAYAAAAVTVLE 105
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in
U twenty twenty, neurogenesis, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 85.2 bits (211), Expect = 5e-21
Identities = 30/114 (26%), Positives = 47/114 (41%), Gaps = 15/114 (13%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLA--GDRFVMGQYMSLHGDV 60
P + + QT+ L C+ATG+P P I W+ DG ++ R + L
Sbjct: 9 PVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGVLQ--- 65
Query: 61 ISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPG-----QPQDVKLV 109
I ++ D+G Y C A+ G T SA + V + +P D L+
Sbjct: 66 -----IRYAKLGDTGRYTCIASTPSGEATWSAYIEVQEFGVPVQPPRPTDPNLI 114
Score = 67.5 bits (165), Expect = 2e-14
Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 6/91 (6%)
Query: 114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPIL-SDAEITIRSSGEYTSSLSIATLS 172
+ V + C+ T G P TI W K+G+ + D+ I +G L I
Sbjct: 16 VNQTVAVDGTFVLSCVAT-GSPVPTILWRKDGVLVSTQDSRIKQLENG----VLQIRYAK 70
Query: 173 TGHSGNYTCVASNTVASDNHSSNLRVNEYTS 203
G +G YTC+AS S+ + V E+
Sbjct: 71 LGDTGRYTCIASTPSGEATWSAYIEVQEFGV 101
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain, membrane,
transmembrane, receptor; 1.60A {Mus musculus} PDB:
3bp5_B 3rnq_B 3bov_A 3rnk_B
Length = 202
Score = 87.4 bits (216), Expect = 5e-21
Identities = 34/189 (17%), Positives = 61/189 (32%), Gaps = 21/189 (11%)
Query: 17 GPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYM---SLHGDVISHVN----ISSV 69
G VSL+C + + +L + + I SV
Sbjct: 17 GSSVSLECDFDRRECTELEGIRASLQKVEN--DTSLQSERATLLEEQLPLGKALFHIPSV 74
Query: 70 RVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCL 129
+V DSG Y+C ++V + + +R ++V + C
Sbjct: 75 QVRDSGQYRCLVICGAAWDYKYLTVKVKASYMRID--------TRILEVPGTGEVQLTCQ 126
Query: 130 VTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVAS 189
G P +SW +P + T G Y + S+ L S N++C+ N
Sbjct: 127 AR-GYPLAEVSWQNVSVPANTSHIRT--PEGLYQVT-SVLRLKPQPSRNFSCMFWNAHMK 182
Query: 190 DNHSSNLRV 198
+ S+ +
Sbjct: 183 ELTSAIIDP 191
Score = 51.6 bits (123), Expect = 4e-08
Identities = 15/85 (17%), Positives = 25/85 (29%), Gaps = 8/85 (9%)
Query: 17 GPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNIS-SVRVEDSG 75
V L C A G P +SW+ P + + V ++ + S
Sbjct: 118 TGEVQLTCQARGYPLAEVSWQNVSVPANTS-------HIRTPEGLYQVTSVLRLKPQPSR 170
Query: 76 IYQCTATNRVGSQTHSADMRVYDAP 100
+ C N + SA +
Sbjct: 171 NFSCMFWNAHMKELTSAIIDPLSRM 195
Score = 43.5 bits (102), Expect = 2e-05
Identities = 23/197 (11%), Positives = 49/197 (24%), Gaps = 62/197 (31%)
Query: 109 VTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSD--------AEITIRSSG 160
VT+ V G ++C + ++ L + + A +
Sbjct: 5 VTAPKEVYTVDVGSSVSLECDFD-RRECTELEGIRASLQKVENDTSLQSERATLLEEQLP 63
Query: 161 EYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATL---------- 210
+ I ++ SG Y C+ A D ++V + L
Sbjct: 64 LGKALFHIPSVQVRDSGQYRCLVICGAAWDYKYLTVKVKASYMRIDTRILEVPGTGEVQL 123
Query: 211 ---STGH--------------------------------------SGNYTCVASNTVASD 229
+ G+ S N++C+ N +
Sbjct: 124 TCQARGYPLAEVSWQNVSVPANTSHIRTPEGLYQVTSVLRLKPQPSRNFSCMFWNAHMKE 183
Query: 230 NHSSNLRVNVPPHIGPF 246
S+ ++ + P
Sbjct: 184 LTSA--IIDPLSRMEPK 198
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody,
immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S
3cm9_S 3chn_J 3cm9_J
Length = 585
Score = 91.6 bits (226), Expect = 6e-21
Identities = 36/275 (13%), Positives = 68/275 (24%), Gaps = 30/275 (10%)
Query: 15 QPGPPVSLKCIATGNPTPHISWKLDGY--PLAGDRFVMGQYMSLHGDVISHVNISSVRVE 72
+ C + + G P R ++ V I+ +R E
Sbjct: 244 EVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDG---SFSVVITGLRKE 300
Query: 73 DSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTK 132
D+G Y C A + Q S + + + +K +G V C +
Sbjct: 301 DAGRYLCGAHSDGQLQEGSPIQAWQL---FVNEESTIPRSPTVVKGVAGSSVAVLCPYNR 357
Query: 133 GDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNH 192
+ W + + S G +
Sbjct: 358 KESKSIKYWCLWEGAQNGRCPLLVDSEGWVKA----------------------QYEGRL 395
Query: 193 SSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGPFTFGELM 252
S T ++ + L++ +G Y C+ + + P++ +
Sbjct: 396 SLLEEPGNGTFTVILNQLTSRDAGFYWCLTNGDTLWRTTVEIKIIEGEPNLKVPGNVTAV 455
Query: 253 EGVRTQVACVVQSGDLPLSLQWYKNGLAISQPDIS 287
G +V C W K Q S
Sbjct: 456 LGETLKVPCHFPCKFSSYEKYWCKWNNTGCQALPS 490
Score = 84.3 bits (207), Expect = 2e-18
Identities = 36/211 (17%), Positives = 65/211 (30%), Gaps = 16/211 (7%)
Query: 2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHIS--WKLDGYPLAGDRFVMGQYMSLHGD 59
P L+ T+ G V++ C +K G G +
Sbjct: 112 GPGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTG 171
Query: 60 VIS-----------HVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKL 108
I V I+ +R+ D+G Y C A + S +AD++V + L
Sbjct: 172 RIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPELVYEDL 231
Query: 109 VTSNSR--SIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEY-TSS 165
S + ++ + A C + G+ + + I + + + S
Sbjct: 232 RGSVTFHCALGPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFS 291
Query: 166 LSIATLSTGHSGNYTCVASNTVASDNHSSNL 196
+ I L +G Y C A + S
Sbjct: 292 VVITGLRKEDAGRYLCGAHSDGQLQEGSPIQ 322
Score = 82.4 bits (202), Expect = 8e-18
Identities = 27/223 (12%), Positives = 55/223 (24%), Gaps = 33/223 (14%)
Query: 12 QTLQPGPPVSLKCIATGNPTPHISW--KLDGYPLAGDRFVMGQYMSLH------------ 57
G V++ C + I + +G ++ +
Sbjct: 341 VKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEE 400
Query: 58 -GDVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSI 116
G+ V ++ + D+G Y C +T + P ++
Sbjct: 401 PGNGTFTVILNQLTSRDAGFYWCLTNGDTLWRTTVEIKIIEGEPNLKVP--------GNV 452
Query: 117 KVHSGDRAGVQCLVT---KGDPPLTISWLKNGLPILSDAE------ITIRSSGEYTSSLS 167
G+ V C W G L + SL+
Sbjct: 453 TAVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLT 512
Query: 168 IATLSTGHSGNYTCVASNTVASDNHSS-NLRVNEYTSSLSIAT 209
+ ++ G Y C ++ + V E ++ S
Sbjct: 513 LNLVTRADEGWYWCGVKQGHFYGETAAVYVAVEERKAAGSRDV 555
Score = 71.6 bits (174), Expect = 4e-14
Identities = 40/291 (13%), Positives = 82/291 (28%), Gaps = 53/291 (18%)
Query: 15 QPGPPVSLKC---IATGNPTPHISWKLDGYPLAGDRFVMGQYMSL------------HGD 59
G VS+ C + N W G + + +
Sbjct: 13 VEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPEN 72
Query: 60 VISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVH 119
VNI+ + +DSG Y+C + + V PG + ++++ V
Sbjct: 73 GTFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVSQGPG-------LLNDTKVYTVD 125
Query: 120 SGDRAGVQCLVT-KGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGN 178
G + C + + + GL + + + + YT + + TG
Sbjct: 126 LGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQ--- 182
Query: 179 YTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVN 238
S+ I L +G Y C A + S+ +++L+V
Sbjct: 183 ----------------------LLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVL 220
Query: 239 VPPHIGPFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQPDISIT 289
P + C + ++ + + D+ +
Sbjct: 221 KPEPELVYED----LRGSVTFHCALGPEVANVAKFLCR-QSSGENCDVVVN 266
Score = 52.3 bits (124), Expect = 8e-08
Identities = 17/147 (11%), Positives = 40/147 (27%), Gaps = 17/147 (11%)
Query: 6 IYKFIQQTLQPGPPVSLKCI----ATGNPTPHISWKLDGYPL---AGDRFVMGQYMSLHG 58
+ T G + + C + W G +
Sbjct: 446 LKVPGNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDEN 505
Query: 59 DVISHVNISSVRVEDSGIYQCTATNRV-GSQTHSADMRVYDAPGQPQDVKLVTSNSRSIK 117
+ + ++ V D G Y C +T + + V + + SR +
Sbjct: 506 SRLVSLTLNLVTRADEGWYWCGVKQGHFYGETAAVYVAVEERK---------AAGSRDVS 556
Query: 118 VHSGDRAGVQCLVTKGDPPLTISWLKN 144
+ D A + ++ G + +++
Sbjct: 557 LAKADAAPDEKVLDSGFREIENKAIQD 583
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human
coxsackievirus A21, cryo-electron
microscopy,virus-receptor complex, icosahedral virus;
HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3
b.1.1.4 b.1.1.4 b.1.1.4
Length = 450
Score = 91.1 bits (225), Expect = 6e-21
Identities = 38/347 (10%), Positives = 79/347 (22%), Gaps = 70/347 (20%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGN---PTPHISWKLDGYPLAGDRFVMGQYMSLHGD 59
++ + G ++L+C G + L + V
Sbjct: 87 ERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAV-------GEP 139
Query: 60 VISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVK--LVTSNSRSIK 117
+ R + C + Q V
Sbjct: 140 AEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRV 199
Query: 118 VHSGDRAGVQCLVTKGDP--PLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGH 175
+ + V C + P + + T+ + S+ + +++
Sbjct: 200 LEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNP----TVTYGNDSFSAKASVSVTAED 255
Query: 176 SGNY--TCVASNTVASDNHSSNLRVNEY-------------------------------- 201
G TC S + + +
Sbjct: 256 EGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEVSEGTEVTVKCEAHPRAKVTL 315
Query: 202 ----------TSSLSIATLSTGHSGNYTCVASNTVAS----DNHSSNLRVNVPPHIGPFT 247
+ L + + +++C A+ VA N + LRV P +
Sbjct: 316 NGVPAQPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERD 375
Query: 248 F---GELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQPDISITLT 291
E + C G+ L+ K+G S+T+T
Sbjct: 376 CPGNWTWPENSQQTPMCQAW-GNPLPELKCLKDGTFPLPIGESVTVT 421
Score = 90.3 bits (223), Expect = 1e-20
Identities = 30/204 (14%), Positives = 56/204 (27%), Gaps = 40/204 (19%)
Query: 1 SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDV 60
S P + + G V++KC A ++
Sbjct: 282 SFPAPNVILTKPEVSEGTEVTVKCEAHPRAKVTLNGVPAQPLGPR--------------- 326
Query: 61 ISHVNISSVRVEDSGIYQCTATNRVGSQ----THSADMRVYDAPGQPQDVKLVTSNSRSI 116
+ + + + ++ + C+AT V Q + ++RV P +
Sbjct: 327 -AQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGP-----RLDERDCPGNW 380
Query: 117 KVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHS 176
+ C G+P + LK+G L E T++
Sbjct: 381 TWPENSQQTPMCQAW-GNPLPELKCLKDGTFPLPIGESV--------------TVTRDLE 425
Query: 177 GNYTCVASNTVASDNHSSNLRVNE 200
G Y C A +T + V
Sbjct: 426 GTYLCRARSTQGEVTREVTVNVLS 449
Score = 88.4 bits (218), Expect = 6e-20
Identities = 29/227 (12%), Positives = 62/227 (27%), Gaps = 35/227 (15%)
Query: 11 QQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVR 70
+ L G V + C + + + + + + + L G+ +S+V+
Sbjct: 8 KVILPRGGSVLVTCSTSCDQPMLLGI---------ETPLPKKELLLPGNNRKVYELSNVQ 58
Query: 71 VEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLV 130
+ C + G T + VY P + V G ++C V
Sbjct: 59 --EDSQPMCYSNCPDGQSTAKTFLTVYWTP------ERVELAPLPSWQPVGKNLTLRCQV 110
Query: 131 TKGDPP--LTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVA 188
G P LT+ L+ + + + + + ++ H N++C +
Sbjct: 111 EGGAPRANLTVVLLRGEKELKREPAVGEPA----EVTTTVLVRRDHHGANFSCRTELDLR 166
Query: 189 SDNHSSNLRVNEYTSSLSIA------------TLSTGHSGNYTCVAS 223
+ + L G C
Sbjct: 167 PQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLD 213
Score = 39.5 bits (91), Expect = 8e-04
Identities = 16/134 (11%), Positives = 29/134 (21%), Gaps = 9/134 (6%)
Query: 167 SIATLSTGHSGNYTCVASNTVASD-----NHSSNLRVNEYTSSLSIATLSTGHSGNYTCV 221
S L G S TC S + + + C
Sbjct: 7 SKVILPRGGSVLVTCSTSCDQPMLLGIETPLPKKELLLPGNNRKVYELSNVQEDSQPMCY 66
Query: 222 ASNTVASDNHSSNLRVNVPPHIGPFTF--GELMEGVRTQVACVVQSG--DLPLSLQWYKN 277
++ + L V P G + C V+ G L++ +
Sbjct: 67 SNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRG 126
Query: 278 GLAISQPDISITLT 291
+ +
Sbjct: 127 EKELKREPAVGEPA 140
Score = 34.8 bits (79), Expect = 0.030
Identities = 16/120 (13%), Positives = 33/120 (27%), Gaps = 13/120 (10%)
Query: 109 VTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSI 168
+ + + + G V C + D P+ + L E+ + + LS
Sbjct: 2 TSVSPSKVILPRGGSVLVTCSTS-CDQPMLLGIETP----LPKKELLLPGNNRKVYELSN 56
Query: 169 ATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLST----GHSGNYTCVASN 224
C ++ + L V + +A L + G + C
Sbjct: 57 VQ----EDSQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEG 112
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural
protein, cell membrane, cytoplasm, cytoskeleton,
disease mutation, immunoglobulin domain; NMR {Homo
sapiens}
Length = 100
Score = 84.3 bits (209), Expect = 6e-21
Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 7/93 (7%)
Query: 8 KFIQ----QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISH 63
+FIQ ++ G + +G P P +SW L+G + D M + +
Sbjct: 7 RFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLH---KMIVSEKGLHS 63
Query: 64 VNISSVRVEDSGIYQCTATNRVGSQTHSADMRV 96
+ VR D+G Y C A NR G T + + V
Sbjct: 64 LIFEVVRASDAGAYACVAKNRAGEATFTVQLDV 96
Score = 72.4 bits (178), Expect = 2e-16
Identities = 21/87 (24%), Positives = 33/87 (37%), Gaps = 1/87 (1%)
Query: 114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLST 173
++ + G + V+ G P +SW NG + SD + S + SL +
Sbjct: 13 ENMSIDEGRFCRMDFKVS-GLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRA 71
Query: 174 GHSGNYTCVASNTVASDNHSSNLRVNE 200
+G Y CVA N + L V
Sbjct: 72 SDAGAYACVAKNRAGEATFTVQLDVLA 98
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin
domain, fibronectin type III repeat, CE adhesion; 1.80A
{Homo sapiens}
Length = 215
Score = 87.2 bits (216), Expect = 8e-21
Identities = 26/108 (24%), Positives = 42/108 (38%), Gaps = 3/108 (2%)
Query: 12 QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRV 71
G V++ C P+ ISW DG L + + S++ ++
Sbjct: 28 VYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNY--SNIKIYNTPSASYLEVTPDSE 85
Query: 72 EDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVH 119
D G Y CTA NR+G ++ + D P P + V S + +V
Sbjct: 86 NDFGNYNCTAVNRIGQESLEFILVQADTPSSPSIDQ-VEPYSSTAQVQ 132
Score = 81.4 bits (201), Expect = 1e-18
Identities = 26/127 (20%), Positives = 44/127 (34%), Gaps = 16/127 (12%)
Query: 75 GIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGD 134
Y ++ V +H AP ++ G++ + C V
Sbjct: 1 ATYAAASSALVPRGSHMY------AP--------KLQGPVAVYTWEGNQVNITCEVF-AY 45
Query: 135 PPLTISWLKNGLPILSDAEITIR-SSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHS 193
P TISW ++G + S I+ + S L + S GNY C A N + ++
Sbjct: 46 PSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLE 105
Query: 194 SNLRVNE 200
L +
Sbjct: 106 FILVQAD 112
Score = 36.0 bits (83), Expect = 0.007
Identities = 11/66 (16%), Positives = 24/66 (36%), Gaps = 7/66 (10%)
Query: 216 GNYTCVASNTVASDNHSSNLRVNVPPHIGPFTFGELMEGVRTQVACVVQSGDLPLSLQWY 275
Y +S V +H ++ P + EG + + C V ++ W+
Sbjct: 1 ATYAAASSALVPRGSHMYAPKLQGPVAV------YTWEGNQVNITCEV-FAYPSATISWF 53
Query: 276 KNGLAI 281
++G +
Sbjct: 54 RDGQLL 59
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C,
C-protein, skeletal muscle fast-isoform, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 84.4 bits (209), Expect = 1e-20
Identities = 19/89 (21%), Positives = 31/89 (34%), Gaps = 5/89 (5%)
Query: 13 TLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVE 72
+ G ++L G P P + W G PL R + D + +
Sbjct: 35 IRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLDTSRVHV-----RTSDFDTVFFVRQAARS 89
Query: 73 DSGIYQCTATNRVGSQTHSADMRVYDAPG 101
DSG Y+ + T + +RV + G
Sbjct: 90 DSGEYELSVQIENMKDTATIRIRVVEKAG 118
Score = 73.6 bits (181), Expect = 1e-16
Identities = 16/87 (18%), Positives = 34/87 (39%), Gaps = 3/87 (3%)
Query: 114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLST 173
++ G++ + G P + W K G P+ + + +R+S ++ + + +
Sbjct: 32 QTYIRKVGEQLNLVVPFQ-GKPRPQVVWTKGGAPLDTS-RVHVRTS-DFDTVFFVRQAAR 88
Query: 174 GHSGNYTCVASNTVASDNHSSNLRVNE 200
SG Y D + +RV E
Sbjct: 89 SDSGEYELSVQIENMKDTATIRIRVVE 115
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta
sandwich, immunoglobulin-like, immune system receptor;
1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A
1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Length = 175
Score = 85.3 bits (211), Expect = 2e-20
Identities = 34/185 (18%), Positives = 56/185 (30%), Gaps = 36/185 (19%)
Query: 12 QTLQPGPPVSLKCIATGNPTPH-ISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVR 70
++ V+LKC +P + W + ++ S I +
Sbjct: 17 YSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQA--------------SSYFIDAAT 62
Query: 71 VEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLV 130
V DSG Y+C S + V+ Q + V D ++C
Sbjct: 63 VNDSGEYRCQTNLSTLSD--PVQLEVHIGWLLLQAPRWV--------FKEEDPIHLRCHS 112
Query: 131 TKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASD 190
K +++L+NG + S I + SG+Y C S
Sbjct: 113 WKNTALHKVTYLQNGKDR---------KYFHHNSDFHIPKATLKDSGSYFCRGLV--GSK 161
Query: 191 NHSSN 195
N SS
Sbjct: 162 NVSSE 166
Score = 57.6 bits (139), Expect = 2e-10
Identities = 22/183 (12%), Positives = 38/183 (20%), Gaps = 52/183 (28%)
Query: 109 VTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSI 168
V + V D ++C + W N I
Sbjct: 10 VFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLI-------------------- 49
Query: 169 ATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVAS 228
+ SS I + SG Y C + + S
Sbjct: 50 ------------------------------SSQASSYFIDAATVNDSGEYRCQTNLSTLS 79
Query: 229 DNHSSNLRVNVPPHIGPFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQPDISI 288
D L V++ + E + C + + +NG +
Sbjct: 80 D--PVQLEVHIGWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYFHHNS 137
Query: 289 TLT 291
Sbjct: 138 DFH 140
Score = 44.1 bits (104), Expect = 9e-06
Identities = 15/90 (16%), Positives = 31/90 (34%), Gaps = 13/90 (14%)
Query: 1 SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPH-ISWKLDGYPLAGDRFVMGQYMSLHGD 59
L+ + + + P+ L+C + N H +++ +G H
Sbjct: 87 HIGWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKY---------FHHN- 136
Query: 60 VISHVNISSVRVEDSGIYQCTATNRVGSQT 89
S +I ++DSG Y C + +
Sbjct: 137 --SDFHIPKATLKDSGSYFCRGLVGSKNVS 164
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle
isozymes; IG fold, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: b.1.1.4
Length = 114
Score = 83.5 bits (207), Expect = 2e-20
Identities = 23/103 (22%), Positives = 39/103 (37%), Gaps = 6/103 (5%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPL-AGDRFVMGQYMSLHGDVI 61
PQ+I Q ++ G V L TG +W + + + + +
Sbjct: 8 PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKV-----ENSENG 62
Query: 62 SHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQ 104
S + I + R E G Y N++GS+ ++ V D P P
Sbjct: 63 SKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKPDPPA 105
Score = 78.5 bits (194), Expect = 1e-18
Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 2/87 (2%)
Query: 114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLST 173
KV +G+ + VT G P+T +W+K I + + +S E S L+I
Sbjct: 15 EDQKVRAGESVELFGKVT-GTQPITCTWMKFRKQIQESEHMKVENS-ENGSKLTILAARQ 72
Query: 174 GHSGNYTCVASNTVASDNHSSNLRVNE 200
H G YT + N + S NL V +
Sbjct: 73 EHCGCYTLLVENKLGSRQAQVNLTVVD 99
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin,
beta-sandwich, mceacam1A - immunoglobulin FO spike NTD -
galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus
musculus} PDB: 1l6z_A*
Length = 208
Score = 86.3 bits (213), Expect = 2e-20
Identities = 39/208 (18%), Positives = 65/208 (31%), Gaps = 30/208 (14%)
Query: 11 QQTLQPGPP-------VSLKCIATGNPTPHISWKLDGYPLAGD---RFVMGQYMSLHGDV 60
+ T++ PP V L +W RFV M+ G
Sbjct: 1 EVTIEAVPPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQA 60
Query: 61 ISHV---------NISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTS 111
S + ++D G+Y T+ + A +R + Q
Sbjct: 61 YSGREIIYSNGSLLFQMITMKDMGVYTLDMTDENY-RRTQATVRFHVHQPVTQ----PFL 115
Query: 112 NSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATL 171
+ V D V D I WL N + +T+ + S L I +
Sbjct: 116 QVTNTTVKELDS--VTLTCLSNDIGANIQWLFNSQSLQLTERMTLSQNN---SILRIDPI 170
Query: 172 STGHSGNYTCVASNTVASDNHSSNLRVN 199
+G Y C SN V S S++++++
Sbjct: 171 KREDAGEYQCEISNPV-SVRRSNSIKLD 197
Score = 50.8 bits (121), Expect = 7e-08
Identities = 21/91 (23%), Positives = 41/91 (45%), Gaps = 10/91 (10%)
Query: 12 QTLQPGPPVSLKCIATGNPTPHISWKLDGYPL-AGDRFVMGQYMSLHGDVISHVNISSVR 70
T++ V+L C++ + +I W + L +R + Q S+ + I ++
Sbjct: 120 TTVKELDSVTLTCLS-NDIGANIQWLFNSQSLQLTERMTLSQNNSI-------LRIDPIK 171
Query: 71 VEDSGIYQCTATNRVGSQT-HSADMRVYDAP 100
ED+G YQC +N V + +S + + P
Sbjct: 172 REDAGEYQCEISNPVSVRRSNSIKLDIIFDP 202
Score = 44.7 bits (105), Expect = 9e-06
Identities = 23/180 (12%), Positives = 49/180 (27%), Gaps = 30/180 (16%)
Query: 109 VTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSI 168
VT + +V + + +W K + + + + ++
Sbjct: 2 VTIEAVPPQVAEDNNVLLLVHNLPLALG-AFAWYKGNTTAID------KEIARFVPNSNM 54
Query: 169 ATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTV-- 226
+SG + SN SL ++ G YT ++
Sbjct: 55 NFTGQAYSGREI-IYSNG-----------------SLLFQMITMKDMGVYTLDMTDENYR 96
Query: 227 -ASDNHSSNLRVNVPPHIGPFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQPD 285
++ V T + E V S D+ ++QW N ++ +
Sbjct: 97 RTQATVRFHVHQPVTQPFLQVTNTTVKEL--DSVTLTCLSNDIGANIQWLFNSQSLQLTE 154
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3;
immunoglobulin, VCBP, V-type, V SET, immune system;
1.85A {Branchiostoma floridae}
Length = 250
Score = 86.9 bits (214), Expect = 3e-20
Identities = 35/238 (14%), Positives = 61/238 (25%), Gaps = 51/238 (21%)
Query: 11 QQTLQPGPPVSLKC---IATGNPTPHISWKLDGYPLAGDRFVMGQY-------------- 53
+ + G V L C +A P ISW P + G Y
Sbjct: 11 EVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDS 70
Query: 54 -----------MSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMR--VYDAP 100
S+ + ++ V +D G Y C D + V
Sbjct: 71 YKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVT 130
Query: 101 GQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPI------------ 148
G + S + ++V G+ + C T ++W
Sbjct: 131 GHTPSNNVHVSTAEVVQVDEGNDITMTCPCT-DCANANVTWYTGPTFFENYETGTYQPLA 189
Query: 149 --------LSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRV 198
+EI R+S +L I +G C + + + +
Sbjct: 190 NKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSSTI 247
Score = 61.5 bits (148), Expect = 2e-11
Identities = 11/113 (9%), Positives = 27/113 (23%), Gaps = 17/113 (15%)
Query: 1 SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDV 60
S+ + + G +++ C T +++W Q ++
Sbjct: 135 SNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQF 194
Query: 61 ISHVN-----------------ISSVRVEDSGIYQCTATNRVGSQTHSADMRV 96
I + ++ D+G C G +
Sbjct: 195 GITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSSTI 247
Score = 57.6 bits (138), Expect = 6e-10
Identities = 30/193 (15%), Positives = 56/193 (29%), Gaps = 26/193 (13%)
Query: 109 VTSNSRSIKVHSGDRAGVQCLVT--KGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSL 166
V + ++VH+G + C P ISWLK P S + +
Sbjct: 5 VRTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLG 64
Query: 167 SIATLSTGHS-GNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNT 225
+ + S S G++ AS N +L + + G Y C +
Sbjct: 65 FVESDSYKESFGDFLGRASVA------------NLAAPTLRLTHVHPQDGGRYWCQVAQW 112
Query: 226 VASDN---HSSNLRVNVPPHIGPFTFG-------ELMEGVRTQVACVVQSGDLPLSLQWY 275
+ ++ + V H ++ EG + C + ++ WY
Sbjct: 113 SIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPC-TDCANANVTWY 171
Query: 276 KNGLAISQPDISI 288
+
Sbjct: 172 TGPTFFENYETGT 184
>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet,
STRU genomics, berkeley structural genomics center,
BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A
Length = 137
Score = 83.1 bits (205), Expect = 4e-20
Identities = 25/109 (22%), Positives = 40/109 (36%), Gaps = 9/109 (8%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRF---------VMGQY 53
+ + Q G V L C A G+P P I W +G + +
Sbjct: 22 AGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIH 81
Query: 54 MSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQ 102
+ H S ++I ++ ED+G Y+C A+N + RV Q
Sbjct: 82 ATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAPRVKWVRAQ 130
Score = 61.6 bits (149), Expect = 4e-12
Identities = 23/109 (21%), Positives = 33/109 (30%), Gaps = 13/109 (11%)
Query: 114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAE------------ITIRSSGE 161
S + G + C G P I W G I
Sbjct: 29 LSQQRWVGGSVELHCEAV-GSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQH 87
Query: 162 YTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATL 210
S++SI TL +G Y C ASN ++ + RV + + L
Sbjct: 88 AASTISIDTLVEEDTGTYECRASNDPDRNHLTRAPRVKWVRAQAVVLVL 136
>2v9t_A Roundabout homolog 1; structural protein-receptor complex,
developmental protein, domain, roundabout, chemotaxis,
LRR domain; 1.70A {Homo sapiens}
Length = 117
Score = 82.5 bits (204), Expect = 5e-20
Identities = 26/102 (25%), Positives = 39/102 (38%), Gaps = 4/102 (3%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGD--- 59
P+++ + G P +L C A G PTP I W G + D+ + L
Sbjct: 10 PRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSL 69
Query: 60 VISHVNISSVRVEDSGIYQCTATNRVGSQ-THSADMRVYDAP 100
+ D G+Y C A N +G +H A + V A
Sbjct: 70 FFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAAAA 111
Score = 54.4 bits (131), Expect = 1e-09
Identities = 20/80 (25%), Positives = 31/80 (38%), Gaps = 7/80 (8%)
Query: 114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAE------ITIRSSGEYTSSLS 167
+ V G+ A + C G P TI W K G + +D + + + S + +
Sbjct: 17 SDLIVSKGEPATLNCKAE-GRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIV 75
Query: 168 IATLSTGHSGNYTCVASNTV 187
S G Y CVA N +
Sbjct: 76 HGRKSRPDEGVYVCVARNYL 95
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein;
2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Length = 154
Score = 83.4 bits (206), Expect = 6e-20
Identities = 29/143 (20%), Positives = 49/143 (34%), Gaps = 18/143 (12%)
Query: 65 NISSVRVEDSGIYQCTATNRVGSQT----HSADMRVYDAPG---QPQDVKLVTSNSRSIK 117
+S + S N+V ++ A+ + + P D++
Sbjct: 3 GMSGRKASGSSPTSPINANKVENEDAFLEEVAEEKPHVKPYFTKTILDME---------- 52
Query: 118 VHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSG 177
V G A C V G P + W K+ P+ I E SL+I+ +
Sbjct: 53 VVEGSAARFDCKVE-GYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDA 111
Query: 178 NYTCVASNTVASDNHSSNLRVNE 200
YTC A N++ ++ L V
Sbjct: 112 KYTCKAVNSLGEATCTAELLVET 134
Score = 81.1 bits (200), Expect = 4e-19
Identities = 22/102 (21%), Positives = 36/102 (35%), Gaps = 3/102 (2%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVIS 62
P + + G C G P P + W D P+ R + +
Sbjct: 42 PYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHF---QIDYDEEGNC 98
Query: 63 HVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQ 104
+ IS V +D Y C A N +G T +A++ V + +
Sbjct: 99 SLTISEVCGDDDAKYTCKAVNSLGEATCTAELLVETMGKEGE 140
Score = 33.3 bits (76), Expect = 0.044
Identities = 16/93 (17%), Positives = 37/93 (39%), Gaps = 13/93 (13%)
Query: 206 SIATLSTGHSGNYTCVASNTVASDN----HSSNLRVNVPPHIGPFTFG----ELMEGVRT 257
++ S + + +N V +++ + + +V P+ FT E++EG
Sbjct: 3 GMSGRKASGSSPTSPINANKVENEDAFLEEVAEEKPHVKPY---FTKTILDMEVVEGSAA 59
Query: 258 QVACVVQSGDLPLSLQWYKNGLAISQ-PDISIT 289
+ C V+ G + W+K+ + + I
Sbjct: 60 RFDCKVE-GYPDPEVMWFKDDNPVKESRHFQID 91
>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK
receptor, receptor tyrosine kinase, 3D-domain swapping,
transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB:
1hcf_X
Length = 103
Score = 81.3 bits (201), Expect = 8e-20
Identities = 15/87 (17%), Positives = 27/87 (31%), Gaps = 1/87 (1%)
Query: 16 PGPPVSLKCIATGNPTPHISWKLDGYPL-AGDRFVMGQYMSLHGDVISHVNISSVRVEDS 74
+ GNP P + W +G L +++ H + + + + ++
Sbjct: 15 SDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNN 74
Query: 75 GIYQCTATNRVGSQTHSADMRVYDAPG 101
G Y A N G PG
Sbjct: 75 GDYTLIAKNEYGKDEKQISAHFMGWPG 101
Score = 70.5 bits (173), Expect = 9e-16
Identities = 17/88 (19%), Positives = 29/88 (32%), Gaps = 5/88 (5%)
Query: 117 KVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSG----EYTSSLSIATLS 172
S + V G+P + W NG + I + EY L + +
Sbjct: 12 SPTSDHHWCIPFTVK-GNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPT 70
Query: 173 TGHSGNYTCVASNTVASDNHSSNLRVNE 200
++G+YT +A N D +
Sbjct: 71 HMNNGDYTLIAKNEYGKDEKQISAHFMG 98
Score = 29.3 bits (66), Expect = 0.41
Identities = 10/47 (21%), Positives = 18/47 (38%), Gaps = 3/47 (6%)
Query: 237 VNVPPHIGPFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQ 283
V+ P I + V G+ +LQW+ NG +++
Sbjct: 1 VHFAPTITFLE--SPTSDHHWCIPFTV-KGNPKPALQWFYNGAILNE 44
>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage
capsid decorative protein, interaction with bacteria;
1.95A {Enterobacteria phage RB49}
Length = 304
Score = 86.4 bits (213), Expect = 9e-20
Identities = 32/234 (13%), Positives = 71/234 (30%), Gaps = 46/234 (19%)
Query: 12 QTLQPGPPVSLKCIATGNPTPH----ISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNIS 67
+ G +L G+ +W D P + + + ++
Sbjct: 12 RCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENN--------------TATLTVA 57
Query: 68 SVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQ 127
E++G Y+ T + + +++ + + + + + V S +
Sbjct: 58 DATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELI----VNITEPQHFYVSSQTDVELH 113
Query: 128 CLVTK--GDPP-----LTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYT 180
V G P L SW K I + T ++I + +G YT
Sbjct: 114 ATVKFSGGKTPADNYELHYSWSKGEDVIDT------------TQDITIQEFTADKNGVYT 161
Query: 181 CVASNTVASDNHSSNLRVNEYTSS-----LSIATLSTGHSGNYTCVASNTVASD 229
S++ ++ T + + T++ G+ + V S + D
Sbjct: 162 VKVWGESEDSAASASTKIMLATMNVDQDVVESKTVALGNEISLNYVVSEDIVGD 215
Score = 56.8 bits (136), Expect = 1e-09
Identities = 28/209 (13%), Positives = 54/209 (25%), Gaps = 44/209 (21%)
Query: 12 QTLQPGPPVSLKC---IATGNPTP-----HISWKLDGYPLAGDRFVMGQYMSLHGDVISH 63
+ V L + G H SW +
Sbjct: 102 FYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVIDTT---------------QD 146
Query: 64 VNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDR 123
+ I + +G+Y SA ++ A S V G+
Sbjct: 147 ITIQEFTADKNGVYTVKVWGESEDSAASASTKIMLATMNVD-----QDVVESKTVALGNE 201
Query: 124 AGVQCLVT-------KGDPPLTISW----LKNGLPILSDAEITIRSSGEYTS-----SLS 167
+ +V+ G P LTI + + G + + + E S L
Sbjct: 202 ISLNYVVSEDIVGDSSGMPNLTIKYNWYLQREGQLSPTLIGSEVGEALEGFSITPDGHLF 261
Query: 168 IATLSTGHSGNYTCVASNTVASDNHSSNL 196
+ + + + CVA ++ + +
Sbjct: 262 KESATYDDTAKFWCVAKLYQQIEDETVEV 290
Score = 47.1 bits (111), Expect = 2e-06
Identities = 15/137 (10%), Positives = 43/137 (31%), Gaps = 17/137 (12%)
Query: 163 TSSLSIATLSTGHSGNYTCVASNTVASDNHSS------NLRVNEYTSSLSIATLSTGHSG 216
+ + G T + ++ + + T++L++A ++ ++G
Sbjct: 6 SIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENNTATLTVADATSENAG 65
Query: 217 NYTCVASNTVASDNHSSNLRV----NVPPHIGPFTFGELMEGVRTQVACVVQ-------S 265
+Y +T + S + + + +I + ++ V+ +
Sbjct: 66 SYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQTDVELHATVKFSGGKTPA 125
Query: 266 GDLPLSLQWYKNGLAIS 282
+ L W K I
Sbjct: 126 DNYELHYSWSKGEDVID 142
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain,
immunoglobulin fold, alternative splicing, signal,
muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB:
1ncu_A 1tnm_A 1tnn_A
Length = 106
Score = 80.9 bits (200), Expect = 1e-19
Identities = 21/95 (22%), Positives = 31/95 (32%), Gaps = 6/95 (6%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPL-AGDRFVMGQYMSLHGDVI 61
+++ K T+ G C G P P ++W G L R +
Sbjct: 15 ARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKST--- 71
Query: 62 SHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRV 96
ISSV+ D G Y N G Q + +
Sbjct: 72 --FEISSVQASDEGNYSVVVENSEGKQEAEFTLTI 104
Score = 76.2 bits (188), Expect = 7e-18
Identities = 21/87 (24%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Query: 114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLST 173
RS+ V+ G+ A C G+P T++WL+ G + + A + ++ S+ I+++
Sbjct: 22 RSMTVYEGESARFSCDTD-GEPVPTVTWLRKGQVLSTSARHQVTTTKY-KSTFEISSVQA 79
Query: 174 GHSGNYTCVASNTVASDNHSSNLRVNE 200
GNY+ V N+ L + +
Sbjct: 80 SDEGNYSVVVENSEGKQEAEFTLTIQK 106
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural
genomics, IG-fold I-SET, RGD motif, homophilic
adhesion, arterial smooth muscle cells; 0.96A {Homo
sapiens}
Length = 99
Score = 80.4 bits (199), Expect = 2e-19
Identities = 21/94 (22%), Positives = 39/94 (41%), Gaps = 3/94 (3%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVIS 62
P + Q+++ G V + G P P +SW + P+ D+ ++ +
Sbjct: 6 PTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQ---RRFAEEAEGGLC 62
Query: 63 HVNISSVRVEDSGIYQCTATNRVGSQTHSADMRV 96
+ I + D+G Y C A N G++ A + V
Sbjct: 63 RLRILAAERGDAGFYTCKAVNEYGARQCEARLEV 96
Score = 70.8 bits (174), Expect = 7e-16
Identities = 22/85 (25%), Positives = 31/85 (36%), Gaps = 1/85 (1%)
Query: 114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLST 173
V G + V G+P +SWL+N P+ D + L I
Sbjct: 13 MDQSVREGQDVIMSIRVQ-GEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAER 71
Query: 174 GHSGNYTCVASNTVASDNHSSNLRV 198
G +G YTC A N + + L V
Sbjct: 72 GDAGFYTCKAVNEYGARQCEARLEV 96
>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin
domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr
virus}
Length = 201
Score = 83.2 bits (205), Expect = 2e-19
Identities = 29/195 (14%), Positives = 50/195 (25%), Gaps = 29/195 (14%)
Query: 13 TLQPGPPVSLKCIA---TGNPTPHISWKLDG-------------YPLAGDRFVMGQYMSL 56
T G V+L + P +SW G + + G +
Sbjct: 2 TAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIH 61
Query: 57 HGDVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSI 116
+ +++ + G Y C T + V ++ +S
Sbjct: 62 RSANTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVVKPL-------TLSVHSERS 114
Query: 117 KVHSGDRAGVQCLVTKGDPPLTISWLKNG----LPILSDAEITIRSSGEYTSSLSIATLS 172
+ V C V P + WL P ++ + G S +L
Sbjct: 115 QFPDFSVLTVTCTVN-AFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSL-SVAVDLSLP 172
Query: 173 TGHSGNYTCVASNTV 187
TCV N
Sbjct: 173 KPWHLPVTCVGKNDK 187
Score = 68.5 bits (167), Expect = 4e-14
Identities = 12/85 (14%), Positives = 20/85 (23%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVIS 62
L + +++ C P PH+ W + G M +S
Sbjct: 105 LTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLS 164
Query: 63 HVNISSVRVEDSGIYQCTATNRVGS 87
S+ C N
Sbjct: 165 VAVDLSLPKPWHLPVTCVGKNDKEE 189
Score = 57.0 bits (137), Expect = 5e-10
Identities = 24/172 (13%), Positives = 41/172 (23%), Gaps = 27/172 (15%)
Query: 116 IKVHSGDRAGVQCLVTK--GDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLST 173
+ G+R + + P + +SW K G +
Sbjct: 1 VTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHD-------------- 46
Query: 174 GHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSS 233
+ + N T L + + H GNY C
Sbjct: 47 -------VIFIEWPFRGFFDIHRSAN--TFFLVVTAANISHDGNYLCRMKLGETEVTKQE 97
Query: 234 NLRVNVPPHIGPF-TFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQP 284
+L V P + + + V C V + +QW P
Sbjct: 98 HLSVVKPLTLSVHSERSQFPDFSVLTVTCTV-NAFPHPHVQWLMPEGVEPAP 148
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane,
cytoplasm, cytoskeleton, disease mutation,
immunoglobulin domain; NMR {Homo sapiens}
Length = 116
Score = 80.5 bits (199), Expect = 2e-19
Identities = 27/104 (25%), Positives = 41/104 (39%), Gaps = 6/104 (5%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLA--GDRFVMGQYMSLHGDV 60
P IYK + + G V L+C + P P + WK + + DR + Q
Sbjct: 16 PMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQ----DNTG 71
Query: 61 ISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQ 104
+ I V +D+G Y +A N G T + + V P Q
Sbjct: 72 RVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTARPNQTL 115
Score = 71.7 bits (176), Expect = 6e-16
Identities = 25/120 (20%), Positives = 44/120 (36%), Gaps = 15/120 (12%)
Query: 85 VGSQTHSADMRVYDAPG---QPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISW 141
+G H AP +PQ K V GD ++C ++ PP + W
Sbjct: 1 MGHHHHHHSHEHKRAPMFIYKPQSKK----------VLEGDSVKLECQIS-AIPPPKLFW 49
Query: 142 LKNGLPILSDAE-ITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNE 200
+N + + + I++ +L I ++ +G YT A N ++ L V
Sbjct: 50 KRNNEMVQFNTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTA 109
Score = 25.8 bits (57), Expect = 8.9
Identities = 11/64 (17%), Positives = 23/64 (35%), Gaps = 8/64 (12%)
Query: 226 VASDNHSSNLRVNVPPHIGPFTFG----ELMEGVRTQVACVVQSGDLPLSLQWYKNGLAI 281
+ +H + P F + +++EG ++ C + S P L W +N +
Sbjct: 1 MGHHHHHHSHEHKRAPM---FIYKPQSKKVLEGDSVKLECQI-SAIPPPKLFWKRNNEMV 56
Query: 282 SQPD 285
Sbjct: 57 QFNT 60
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo
sapiens}
Length = 99
Score = 80.0 bits (198), Expect = 3e-19
Identities = 21/94 (22%), Positives = 32/94 (34%), Gaps = 10/94 (10%)
Query: 8 KFIQ----QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLA-GDRFVMGQYMSLHGDVIS 62
+ T+ ATG P P W DG + G ++ +
Sbjct: 8 VIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKL-----SEDKGGF 62
Query: 63 HVNISSVRVEDSGIYQCTATNRVGSQTHSADMRV 96
+ I DSG+Y CT N GS + S + +
Sbjct: 63 FLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTI 96
Score = 68.9 bits (169), Expect = 3e-15
Identities = 23/85 (27%), Positives = 31/85 (36%), Gaps = 2/85 (2%)
Query: 114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLST 173
+ V S A T G+P T W K+G I + + L I T
Sbjct: 14 QDTTVSSDSVAKFAVKAT-GEPRPTAIWTKDGKAITQGGKYKLSEDKG-GFFLEIHKTDT 71
Query: 174 GHSGNYTCVASNTVASDNHSSNLRV 198
SG YTC N+ S + S L +
Sbjct: 72 SDSGLYTCTVKNSAGSVSSSCKLTI 96
Score = 25.7 bits (57), Expect = 8.3
Identities = 9/58 (15%), Positives = 19/58 (32%), Gaps = 9/58 (15%)
Query: 237 VNVPPHIGPFTFG----ELMEGVRTQVACVVQSGDLPLSLQWYKNGLAI-SQPDISIT 289
++ P G + + A +G+ + W K+G AI ++
Sbjct: 3 ISSKPV---IVTGLQDTTVSSDSVAKFAVKA-TGEPRPTAIWTKDGKAITQGGKYKLS 56
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural
plasticity, cell-surface dimerizatio adhesion; HET: NAG
FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4
PDB: 1p53_A*
Length = 265
Score = 84.0 bits (207), Expect = 3e-19
Identities = 33/203 (16%), Positives = 58/203 (28%), Gaps = 40/203 (19%)
Query: 1 SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDV 60
S P + + G V++KC A L+G P
Sbjct: 97 SFPAPNVILTKPEVSEGTEVTVKCEAHPRAK----VTLNGVPAQPL------------GP 140
Query: 61 ISHVNISSVRVEDSGIYQCTATNRVGSQTH----SADMRVYDAPGQPQDVKLVTSNSRSI 116
+ + + + ++ + C+AT V Q + ++RV P +
Sbjct: 141 RAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGP-----RLDERDCPGNW 195
Query: 117 KVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHS 176
+ C G+P + LK+G L E T++
Sbjct: 196 TWPENSQQTPMC-QAWGNPLPELKCLKDGTFPLPIGESV--------------TVTRDLE 240
Query: 177 GNYTCVASNTVASDNHSSNLRVN 199
G Y C A +T + V
Sbjct: 241 GTYLCRARSTQGEVTREVTVNVL 263
Score = 75.9 bits (186), Expect = 3e-16
Identities = 41/275 (14%), Positives = 68/275 (24%), Gaps = 72/275 (26%)
Query: 12 QTLQPGPPVSLKCIATGN---PTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISS 68
+ L+ ++ C G + L L ++ D S S
Sbjct: 13 RVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPT-------VTYGNDSFSAKASVS 65
Query: 69 VRVEDSG--IYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGV 126
V ED G C SQ + +Y P +V G V
Sbjct: 66 VTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAP-------NVILTKPEVSEGTEVTV 118
Query: 127 QCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNT 186
+C + P NG+P + L + + +++C A+
Sbjct: 119 KC---EAHPR--AKVTLNGVPAQPLGP---------RAQLLLKATPEDNGRSFSCSATLE 164
Query: 187 VASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGPF 246
VA + N + LRV P +
Sbjct: 165 VAGQ-----------------------------------LIHKNQTRELRVLYGPRLDER 189
Query: 247 TFGE---LMEGVRTQVACVVQSGDLPLSLQWYKNG 278
E + C G+ L+ K+G
Sbjct: 190 DCPGNWTWPENSQQTPMCQA-WGNPLPELKCLKDG 223
Score = 37.3 bits (86), Expect = 0.004
Identities = 18/177 (10%), Positives = 36/177 (20%), Gaps = 49/177 (27%)
Query: 118 VHSGDRAGVQCLVTKGDPP--LTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGH 175
+ + V C + P + + T+ + S+ + +++
Sbjct: 15 LEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNP----TVTYGNDSFSAKASVSVTAED 70
Query: 176 SGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNL 235
G + TC S +
Sbjct: 71 EG-------------------------------------TQRLTCAVILGNQSQETLQTV 93
Query: 236 RVNVPPHIGPFTFG-ELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQPDISITLT 291
+ P E+ EG V C + NG+ L
Sbjct: 94 TIYSFPAPNVILTKPEVSEGTEVTVKCEAHP-----RAKVTLNGVPAQPLGPRAQLL 145
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 99
Score = 79.3 bits (196), Expect = 5e-19
Identities = 27/95 (28%), Positives = 36/95 (37%), Gaps = 13/95 (13%)
Query: 8 KFIQ----QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDR-FVMGQYMSLHGDVIS 62
F + G L+C G P P I+W L+G P+ R LH
Sbjct: 13 SFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTCEAGVAELH----- 67
Query: 63 HVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVY 97
I ED G Y C A N +G + SA + V+
Sbjct: 68 ---IQDALPEDHGTYTCLAENALGQVSCSAWVTVH 99
Score = 64.3 bits (157), Expect = 1e-13
Identities = 24/86 (27%), Positives = 33/86 (38%), Gaps = 5/86 (5%)
Query: 114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLST 173
+ V G +QC V G P I+WL NG PI L I
Sbjct: 19 KDCAVIEGQDFVLQCSVR-GTPVPRITWLLNGQPIQYARSTCEAGVA----ELHIQDALP 73
Query: 174 GHSGNYTCVASNTVASDNHSSNLRVN 199
G YTC+A N + + S+ + V+
Sbjct: 74 EDHGTYTCLAENALGQVSCSAWVTVH 99
>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 79.0 bits (195), Expect = 6e-19
Identities = 22/90 (24%), Positives = 34/90 (37%), Gaps = 11/90 (12%)
Query: 12 QTLQPGPPVSLKCIATGNPTPHISWKLDGYPL-AGDRFVMGQYMSLHGDVISHVNISSVR 70
+ PG + L+C + I+W DG L +R + V +
Sbjct: 13 FLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTRITG---------EEVEVQDSV 62
Query: 71 VEDSGIYQCTATNRVGSQTHSADMRVYDAP 100
DSG+Y C ++ GS T + V DA
Sbjct: 63 PADSGLYACVTSSPSGSDTTYFSVNVSDAL 92
Score = 70.5 bits (173), Expect = 9e-16
Identities = 22/91 (24%), Positives = 38/91 (41%), Gaps = 7/91 (7%)
Query: 114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLST 173
S VH GD ++C + D +I+WL++G+ + I + +
Sbjct: 11 ESFLVHPGDLLQLRCRLR-DDVQ-SINWLRDGVQLAESNRTRITG-----EEVEVQDSVP 63
Query: 174 GHSGNYTCVASNTVASDNHSSNLRVNEYTSS 204
SG Y CV S+ SD ++ V++ S
Sbjct: 64 ADSGLYACVTSSPSGSDTTYFSVNVSDALPS 94
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody,
immune system; HET: NAG BMA MAN FUC; 2.20A {Homo
sapiens} PDB: 3sgk_C*
Length = 204
Score = 81.5 bits (201), Expect = 9e-19
Identities = 33/208 (15%), Positives = 64/208 (30%), Gaps = 36/208 (17%)
Query: 12 QTLQPGPPVSLKCIATGNPTPH-ISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVR 70
+ V+LKC +P W + ++ S I +
Sbjct: 17 YRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQA--------------SSYFIDAAT 62
Query: 71 VEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLV 130
V+DSG Y+C S + V+ Q + V D ++C
Sbjct: 63 VDDSGEYRCQTQLSTLSD--PVQLEVHIGWLLLQAPRWV--------FKEEDPIHLRCHS 112
Query: 131 TKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASD 190
K +++L+NG + S I + SG+Y C +
Sbjct: 113 WKNTALHKVTYLQNGKGR---------KYFHHNSDFYIPKATLKDSGSYFCRGLVGSKNV 163
Query: 191 NHSS-NLRVNEYTSSLSI-ATLSTGHSG 216
+ + + + + + +I + G+ G
Sbjct: 164 SSETVQITITQGLAVSTISSFFPPGYQG 191
Score = 53.3 bits (128), Expect = 1e-08
Identities = 15/95 (15%), Positives = 27/95 (28%), Gaps = 2/95 (2%)
Query: 197 RVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGPFTFGELMEGVR 256
++ SS I + SG Y C + SD L V++ + E
Sbjct: 48 LISSQASSYFIDAATVDDSGEYRCQTQLSTLSD--PVQLEVHIGWLLLQAPRWVFKEEDP 105
Query: 257 TQVACVVQSGDLPLSLQWYKNGLAISQPDISITLT 291
+ C + + +NG +
Sbjct: 106 IHLRCHSWKNTALHKVTYLQNGKGRKYFHHNSDFY 140
Score = 44.1 bits (104), Expect = 1e-05
Identities = 15/90 (16%), Positives = 31/90 (34%), Gaps = 13/90 (14%)
Query: 1 SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPH-ISWKLDGYPLAGDRFVMGQYMSLHGD 59
L+ + + + P+ L+C + N H +++ +G H +
Sbjct: 87 HIGWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRK----------YFHHN 136
Query: 60 VISHVNISSVRVEDSGIYQCTATNRVGSQT 89
S I ++DSG Y C + +
Sbjct: 137 --SDFYIPKATLKDSGSYFCRGLVGSKNVS 164
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase,
heparin-binding, nucleotide-binding, immunoglobulin
domain, alternatice splicing; NMR {Mus musculus}
Length = 95
Score = 78.3 bits (193), Expect = 9e-19
Identities = 20/86 (23%), Positives = 31/86 (36%), Gaps = 11/86 (12%)
Query: 12 QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLA-GDRFVMGQYMSLHGDVISHVNISSVR 70
+ PG + L+C I+W DG L +R + V +
Sbjct: 19 LLVHPGDLLQLRCRLRD-DVQSINWLRDGVQLVESNRTRITG---------EEVEVRDSI 68
Query: 71 VEDSGIYQCTATNRVGSQTHSADMRV 96
DSG+Y C ++ GS T + V
Sbjct: 69 PADSGLYACVTSSPSGSDTTYFSVNV 94
Score = 70.6 bits (173), Expect = 8e-16
Identities = 24/101 (23%), Positives = 42/101 (41%), Gaps = 9/101 (8%)
Query: 100 PGQPQDVK--LVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIR 157
P P+ + V S+ VH GD ++C + D +I+WL++G+ ++ I
Sbjct: 1 PTLPEQAQPWGVPVEVESLLVHPGDLLQLRCRLR--DDVQSINWLRDGVQLVESNRTRIT 58
Query: 158 SSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRV 198
+ + SG Y CV S+ SD ++ V
Sbjct: 59 GE-----EVEVRDSIPADSGLYACVTSSPSGSDTTYFSVNV 94
>2ens_A Advanced glycosylation END product-specific receptor;
beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 96
Score = 78.2 bits (193), Expect = 1e-18
Identities = 23/94 (24%), Positives = 35/94 (37%), Gaps = 13/94 (13%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVIS 62
QL+ + + PG V+L C P+P I W DG PL + L
Sbjct: 11 VQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLP-----LPPSPVLI----- 60
Query: 63 HVNISSVRVEDSGIYQCTATNRVGSQTHSADMRV 96
+ + +D G Y C AT+ S + +
Sbjct: 61 ---LPEIGPQDQGTYSCVATHSSHGPQESRAVSI 91
Score = 65.1 bits (159), Expect = 8e-14
Identities = 18/86 (20%), Positives = 33/86 (38%), Gaps = 11/86 (12%)
Query: 114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLST 173
V G + C V P I W+K+G+P+ + S L + +
Sbjct: 18 EGGAVAPGGTVTLTCEVP-AQPSPQIHWMKDGVPL------PLPPSP----VLILPEIGP 66
Query: 174 GHSGNYTCVASNTVASDNHSSNLRVN 199
G Y+CVA+++ S + ++
Sbjct: 67 QDQGTYSCVATHSSHGPQESRAVSIS 92
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo
sapiens}
Length = 103
Score = 77.7 bits (192), Expect = 2e-18
Identities = 17/97 (17%), Positives = 31/97 (31%), Gaps = 4/97 (4%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVIS 62
P++ + + G PT + W +G L + + +
Sbjct: 9 PRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQES----SKIHYTNTSGVL 64
Query: 63 HVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDA 99
+ I +DSG Y+ TN G + A + V
Sbjct: 65 TLEILDCHTDDSGTYRAVCTNYKGEASDYATLDVTGG 101
Score = 68.1 bits (167), Expect = 8e-15
Identities = 20/85 (23%), Positives = 32/85 (37%), Gaps = 2/85 (2%)
Query: 114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLST 173
RS +V G V P + W NG+ + ++I ++ +L I T
Sbjct: 16 RSHRVPCGQNTRFILNVQ-SKPTAEVKWYHNGVELQESSKIHYTNTSG-VLTLEILDCHT 73
Query: 174 GHSGNYTCVASNTVASDNHSSNLRV 198
SG Y V +N + + L V
Sbjct: 74 DDSGTYRAVCTNYKGEASDYATLDV 98
Score = 29.2 bits (66), Expect = 0.50
Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 9/58 (15%)
Query: 237 VNVPPHIGPFTFG----ELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQ-PDISIT 289
++ P T + G T+ VQ ++WY NG+ + + I T
Sbjct: 5 LDHAPR---ITLRMRSHRVPCGQNTRFILNVQ-SKPTAEVKWYHNGVELQESSKIHYT 58
>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor
tyrosine kinase, 3D-domain swapping, transferase; 1.90A
{Homo sapiens} SCOP: b.1.1.4
Length = 118
Score = 77.9 bits (192), Expect = 3e-18
Identities = 16/88 (18%), Positives = 33/88 (37%)
Query: 20 VSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQC 79
++ + GNP P + W +G PL + + +Y + + ++G Y
Sbjct: 23 HCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTL 82
Query: 80 TATNRVGSQTHSADMRVYDAPGQPQDVK 107
A N +G+ + + P +V
Sbjct: 83 IAKNPLGTANQTINGHFLKEPFPVDEVS 110
Score = 69.1 bits (169), Expect = 5e-15
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Query: 126 VQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGE---YTSSLSIATLSTGHSGNYTCV 182
++ +V G+PP T+ WL NG P+ I + E L + ++GNYT +
Sbjct: 25 IEFVVR-GNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLI 83
Query: 183 ASNTVASDNHSSNLRVNE 200
A N + + N + N +
Sbjct: 84 AKNPLGTANQTINGHFLK 101
Score = 32.1 bits (73), Expect = 0.068
Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
Query: 234 NLRVNVPPHIGPFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQ 283
L V PP + EL + VV+ G+ P +L W NG + +
Sbjct: 2 ALTVYYPPRVVSLEEPELRLE--HCIEFVVR-GNPPPTLHWLHNGQPLRE 48
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 110
Score = 77.0 bits (190), Expect = 4e-18
Identities = 24/103 (23%), Positives = 40/103 (38%), Gaps = 6/103 (5%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLA--GDRFVMGQYMSLHGDV 60
P K + G PV+ C GNP P I W DG ++ D + + + D
Sbjct: 9 PFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQR----DLDG 64
Query: 61 ISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQP 103
++ ++ ++D G Y A N G + + + V P
Sbjct: 65 TCSLHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQAVNSGP 107
Score = 67.0 bits (164), Expect = 2e-14
Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 2/92 (2%)
Query: 114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAE-ITIRSSGEYTSSLSIATLS 172
+ K+ G C V G+P I W K+G I ++ TI+ + T SL +
Sbjct: 16 KHYKIFEGMPVTFTCRVA-GNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTAST 74
Query: 173 TGHSGNYTCVASNTVASDNHSSNLRVNEYTSS 204
GNYT +A+N + + L V S
Sbjct: 75 LDDDGNYTIMAANPQGRISCTGRLMVQAVNSG 106
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain,
beta-sandwhich, I-SET, structural protein; 2.10A {Homo
sapiens} SCOP: b.1.1.4
Length = 99
Score = 76.5 bits (189), Expect = 4e-18
Identities = 23/94 (24%), Positives = 32/94 (34%), Gaps = 9/94 (9%)
Query: 8 KFIQ----QTLQPGPPVSLKCIATGNPTPHISWKLDGYPL-AGDRFVMGQYMSLHGDVIS 62
K + QT+ G + G P P W +G + DR Y D +
Sbjct: 7 KIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRI----YWYWPEDNVC 62
Query: 63 HVNISSVRVEDSGIYQCTATNRVGSQTHSADMRV 96
+ I V EDS A N G + A + V
Sbjct: 63 ELVIRDVTGEDSASIMVKAINIAGETSSHAFLLV 96
Score = 66.5 bits (163), Expect = 2e-14
Identities = 20/87 (22%), Positives = 29/87 (33%), Gaps = 1/87 (1%)
Query: 114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLST 173
+S V G A + V G P W KNG+ I I + L I ++
Sbjct: 13 QSQTVGQGSDAHFRVRVV-GKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTG 71
Query: 174 GHSGNYTCVASNTVASDNHSSNLRVNE 200
S + A N + + L V
Sbjct: 72 EDSASIMVKAINIAGETSSHAFLLVQA 98
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily.,
cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Length = 231
Score = 79.9 bits (196), Expect = 7e-18
Identities = 38/222 (17%), Positives = 70/222 (31%), Gaps = 36/222 (16%)
Query: 16 PGPPVSLKCIATGNPTPH-ISWKLDGYPLAGDRFVMGQYMSLHGDVISHVN--------- 65
G V L C TG + + W L A R + V H
Sbjct: 14 RGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQL 73
Query: 66 -------ISSVRVEDSGIYQCTA-TNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIK 117
++ +V D Y C G+ +A + V+ P + + +
Sbjct: 74 DSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATE---VSPNKGTLSV 130
Query: 118 VHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIR----------SSGEYT--SS 165
+ + C G+P I+W +NG + E+ +SG + S+
Sbjct: 131 MEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSLTST 190
Query: 166 LSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSI 207
L + ++ C A ++ H R++ T L++
Sbjct: 191 LYLRLRKDDRDASFHCAAHYSLPEGRHG---RLDSPTFHLTL 229
Score = 47.5 bits (112), Expect = 1e-06
Identities = 25/176 (14%), Positives = 50/176 (28%), Gaps = 26/176 (14%)
Query: 115 SIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTG 174
++V G + C T + W + +A+
Sbjct: 9 LVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRS---------------GARPRLASAEMQ 53
Query: 175 HSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTC-VASNTVASDNHSS 233
S + S + + L +A G +Y C V + + ++
Sbjct: 54 GSELQVTMHDTRGRSPPYQLD-----SQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATA 108
Query: 234 NLRVNVPPHI-----GPFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQP 284
L V P T + + + C ++G+ + WY+NG + P
Sbjct: 109 RLNVFAKPEATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVP 164
>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein
1 (isoform 2); hydrolase, immunoglobulin domain,
nucleus, protease; 1.15A {Homo sapiens}
Length = 91
Score = 75.8 bits (187), Expect = 7e-18
Identities = 24/92 (26%), Positives = 34/92 (36%), Gaps = 13/92 (14%)
Query: 1 SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDV 60
S Q+ + Q L PG + L+C+A G+P PH W + PL +
Sbjct: 2 SKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHET-----KKLYM--- 53
Query: 61 ISHVNISSVRVEDSGIYQCTATNRVGSQTHSA 92
+ V +E G Y C N SQ
Sbjct: 54 -----VPYVDLEHQGTYWCHVYNDRDSQDSKK 80
Score = 62.0 bits (151), Expect = 8e-13
Identities = 20/93 (21%), Positives = 32/93 (34%), Gaps = 12/93 (12%)
Query: 109 VTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSI 168
+ S K+ G +QC+ G P W KN LP+ + E +
Sbjct: 6 ICVEPTSQKLMPGSTLVLQCVAV-GSPIPHYQWFKNELPL----------THETKKLYMV 54
Query: 169 ATLSTGHSGNYTCVASNTVASDNHSS-NLRVNE 200
+ H G Y C N S + + ++E
Sbjct: 55 PYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDE 87
Score = 27.3 bits (61), Expect = 2.1
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 6/52 (11%)
Query: 232 SSNLRVNVPPHIGPFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQ 283
S L++ V P T +LM G + CV G QW+KN L ++
Sbjct: 1 GSKLQICVEP-----TSQKLMPGSTLVLQCVA-VGSPIPHYQWFKNELPLTH 46
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET,
muscle protein; NMR {Caenorhabditis elegans} SCOP:
b.1.1.4 PDB: 1wiu_A
Length = 93
Score = 74.3 bits (183), Expect = 3e-17
Identities = 16/98 (16%), Positives = 34/98 (34%), Gaps = 12/98 (12%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPL-AGDRFVM---GQYMSLHG 58
P+++ + ++ G +L+ G P P +W + ++ S+
Sbjct: 3 PKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIF- 61
Query: 59 DVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRV 96
S + DSG Y+ N +G ++ V
Sbjct: 62 -------FPSAKRADSGNYKLKVKNELGEDEAIFEVIV 92
Score = 73.5 bits (181), Expect = 5e-17
Identities = 19/90 (21%), Positives = 34/90 (37%), Gaps = 2/90 (2%)
Query: 109 VTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSI 168
+ + SR IK+ +G ++ G P T +W E+ + + T+S+
Sbjct: 5 ILTASRKIKIKAGFTHNLEVDFI-GAPDPTATWTVGDSGAALAPELLVDAKS-STTSIFF 62
Query: 169 ATLSTGHSGNYTCVASNTVASDNHSSNLRV 198
+ SGNY N + D + V
Sbjct: 63 PSAKRADSGNYKLKVKNELGEDEAIFEVIV 92
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus}
SCOP: b.1.1.1 b.1.1.3
Length = 176
Score = 76.2 bits (187), Expect = 5e-17
Identities = 22/185 (11%), Positives = 55/185 (29%), Gaps = 30/185 (16%)
Query: 21 SLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVN-----ISSVRVEDSG 75
++ + + W+ +A F L + I ++ +DSG
Sbjct: 17 NIPNFQMTDDIDEVRWERGSTLVA--EFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSG 74
Query: 76 IYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDP 135
Y T + G++ + + + + + ++ ++ C V +G
Sbjct: 75 TYNVTVYSTNGTRILNKALDLRILEMVSKPMIYWECSNATL----------TCEVLEGTD 124
Query: 136 PLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSN 195
+ + + S + T+ T + C A N V+ ++
Sbjct: 125 V-ELKLYQGKEHLRSLRQKTMSYQ------------WTNLRAPFKCKAVNRVSQESEMEV 171
Query: 196 LRVNE 200
+ E
Sbjct: 172 VNCPE 176
Score = 46.5 bits (110), Expect = 1e-06
Identities = 21/157 (13%), Positives = 34/157 (21%), Gaps = 48/157 (30%)
Query: 130 VTKGDPPLTISWLKNGLPILS--DAEITIRSSGEYT----SSLSIATLSTGHSGNYTCVA 183
D + W + + SG + L I L+ SG Y
Sbjct: 21 FQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTV 80
Query: 184 SNTVASDNHSSNLRVNEY----------------------------------------TS 203
+T + + L +
Sbjct: 81 YSTNGTRILNKALDLRILEMVSKPMIYWECSNATLTCEVLEGTDVELKLYQGKEHLRSLR 140
Query: 204 SLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVP 240
+++ T + C A N V S VN P
Sbjct: 141 QKTMSYQWTNLRAPFKCKAVNRV--SQESEMEVVNCP 175
Score = 44.6 bits (105), Expect = 7e-06
Identities = 20/116 (17%), Positives = 35/116 (30%), Gaps = 7/116 (6%)
Query: 180 TCVASNTVASDNHSSNLRVNEYTS-SLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVN 238
T VA + + L I L+ SG Y +T + + L +
Sbjct: 37 TLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYSTNGTRILNKALDLR 96
Query: 239 VPPHIGPFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAI---SQPDISITLT 291
+ + E + C V G + L+ Y+ + Q +S T
Sbjct: 97 ILEMVSKPMI--YWECSNATLTCEVLEGT-DVELKLYQGKEHLRSLRQKTMSYQWT 149
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND,
structural protein, muscle, antibo; 1.69A {Homo sapiens}
Length = 97
Score = 72.4 bits (178), Expect = 2e-16
Identities = 14/91 (15%), Positives = 28/91 (30%), Gaps = 1/91 (1%)
Query: 108 LVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLS 167
+V+ G C + D ++W + + + I + L
Sbjct: 3 MVSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGV-AILY 61
Query: 168 IATLSTGHSGNYTCVASNTVASDNHSSNLRV 198
+ ++ G Y C N D+ + L V
Sbjct: 62 VKDITKLDDGTYRCKVVNDYGEDSSYAELFV 92
Score = 67.3 bits (165), Expect = 1e-14
Identities = 14/90 (15%), Positives = 28/90 (31%), Gaps = 13/90 (14%)
Query: 12 QTLQPGPPVSLKCIATGNPTP-HISWKLDGYPL-AGDRFVM---GQYMSLHGDVISHVNI 66
+ G V C ++W L +++ + L+ +
Sbjct: 11 AVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILY--------V 62
Query: 67 SSVRVEDSGIYQCTATNRVGSQTHSADMRV 96
+ D G Y+C N G + A++ V
Sbjct: 63 KDITKLDDGTYRCKVVNDYGEDSSYAELFV 92
Score = 32.7 bits (75), Expect = 0.026
Identities = 8/39 (20%), Positives = 14/39 (35%), Gaps = 1/39 (2%)
Query: 252 MEGVRTQVACVVQSGDLPLSLQWYKNGLAISQ-PDISIT 289
EG + C +++ D + WY + IT
Sbjct: 14 EEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEIT 52
>1he7_A High affinity nerve growth factor receptor; transferase,
TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP:
b.1.1.4 PDB: 1wwa_X 1www_X
Length = 126
Score = 72.7 bits (178), Expect = 3e-16
Identities = 18/119 (15%), Positives = 35/119 (29%), Gaps = 5/119 (4%)
Query: 1 SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFV---MGQYMSLH 57
SH + T + G P P + W +G L F+ + +
Sbjct: 1 SHMPASVQL--HTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANE 58
Query: 58 GDVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSI 116
+ ++ ++G Y A N G + S D P + + + +
Sbjct: 59 TVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNPFEFNPEDPIPDTNSTS 117
Score = 66.5 bits (162), Expect = 4e-14
Identities = 18/95 (18%), Positives = 36/95 (37%), Gaps = 8/95 (8%)
Query: 114 RSIKVHSGDRAGVQCL--VTKGDPPLTISWLKNGLPILSDAEITIR------SSGEYTSS 165
S+++H+ C+ G P ++ WL NG + + I +
Sbjct: 5 ASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGC 64
Query: 166 LSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNE 200
L + + ++GNYT +A+N + S +
Sbjct: 65 LRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMD 99
>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system;
3.00A {Homo sapiens}
Length = 193
Score = 73.1 bits (179), Expect = 7e-16
Identities = 25/133 (18%), Positives = 55/133 (41%), Gaps = 16/133 (12%)
Query: 66 ISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAG 125
+S++++ED+G Y+ + + ++ S +R+ Q VT++S+ +
Sbjct: 74 LSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQ----VTNHSQLF-QNMTCELH 128
Query: 126 VQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASN 185
+ C V D ++ W G + S +T+ +YTC+A N
Sbjct: 129 LTCSVEDADDNVSFRWEALGNTLSSQPNLTVSW-----------DPRISSEQDYTCIAEN 177
Query: 186 TVASDNHSSNLRV 198
V++ + S + +
Sbjct: 178 AVSNLSFSVSAQK 190
Score = 46.1 bits (109), Expect = 2e-06
Identities = 28/187 (14%), Positives = 60/187 (32%), Gaps = 29/187 (15%)
Query: 109 VTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSI 168
++ + G+ + G+ I+WL N S+
Sbjct: 1 MSLTPLMVNGILGESVTLPLEFPAGEKVNFITWLFNET--------------------SL 40
Query: 169 ATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVAS 228
A + + + +N L + + SL ++ L +G+Y S ++
Sbjct: 41 AFIVPHETKSPEIHVTN----PKQGKRLNFTQ-SYSLQLSNLKMEDTGSYRAQISTKTSA 95
Query: 229 DNHSSNLRVNVP---PHIGPFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNG-LAISQP 284
S LR+ + + + C V+ D +S +W G SQP
Sbjct: 96 KLSSYTLRILRQLRNIQVTNHSQLFQNMTCELHLTCSVEDADDNVSFRWEALGNTLSSQP 155
Query: 285 DISITLT 291
+++++
Sbjct: 156 NLTVSWD 162
>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 68.2 bits (167), Expect = 7e-15
Identities = 12/87 (13%), Positives = 29/87 (33%), Gaps = 5/87 (5%)
Query: 114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLST 173
++++V G+ +C+++ W G + S + G L + +
Sbjct: 16 KTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGR-KYILVVREAAP 74
Query: 174 GHSGNYTCVASNTVASDNHSSNLRVNE 200
+G + ++L V E
Sbjct: 75 SDAGEVVFSVRGLTS----KASLIVRE 97
Score = 60.9 bits (148), Expect = 4e-12
Identities = 16/108 (14%), Positives = 33/108 (30%), Gaps = 17/108 (15%)
Query: 2 HPQLIYKFIQQTLQPGPPVSLKC-IATGNPTPHISWKLDGYPL-AGDRFVM---GQYMSL 56
H + + + G S +C ++ + + W + G + + RF G+ L
Sbjct: 8 HVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRKYIL 67
Query: 57 HGDVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQ 104
+ D+G + T A + V + G
Sbjct: 68 V--------VREAAPSDAGEVVFSV----RGLTSKASLIVRERSGPSS 103
Score = 29.7 bits (67), Expect = 0.34
Identities = 9/41 (21%), Positives = 13/41 (31%), Gaps = 1/41 (2%)
Query: 250 ELMEGVRTQVACVVQSGDLPLSLQWYKNGLAI-SQPDISIT 289
E++EG CV+ W G + S T
Sbjct: 19 EVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQAT 59
>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core
protein; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4
Length = 98
Score = 67.9 bits (166), Expect = 7e-15
Identities = 21/93 (22%), Positives = 37/93 (39%), Gaps = 12/93 (12%)
Query: 6 IYKFIQQTLQPGPPVSLKCIA-TGNPTPHISW-KLDGYPLAGDRFVMGQYMSLHGDVISH 63
+ + Q+++PG V+ C A + +P + W +L L L
Sbjct: 14 VEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFNG--ILT------ 65
Query: 64 VNISSVRVEDSGIYQCTATNRVGSQTHSADMRV 96
I +V+ D+G Y CT +N +A + V
Sbjct: 66 --IRNVQPSDAGTYVCTGSNMFAMDQGTATLHV 96
Score = 62.9 bits (153), Expect = 5e-13
Identities = 22/102 (21%), Positives = 34/102 (33%), Gaps = 8/102 (7%)
Query: 99 APGQPQD--VKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITI 156
AP + + RS V G C P T+ W + L
Sbjct: 1 APLAAPSKPIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPS----- 55
Query: 157 RSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRV 198
+ ++ L+I + +G Y C SN A D ++ L V
Sbjct: 56 -RAMDFNGILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHV 96
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative
splicing, cell adhesion, cell membrane, glycoprotein,
HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3uro_R
3epc_R* 3epd_R* 3epf_R*
Length = 221
Score = 71.3 bits (174), Expect = 7e-15
Identities = 36/211 (17%), Positives = 62/211 (29%), Gaps = 29/211 (13%)
Query: 11 QQTLQPGPPVSLKCIATGNPTP-----HISWKLDG-------YPLAGDRFVMGQY-MSLH 57
Q G V+L C ++W G + +
Sbjct: 8 QVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFV 67
Query: 58 GDVIS------HVNISSVRVEDSGIYQCT-ATNRVGSQTHSADMRVYDAPGQPQDVKLVT 110
+ + + +RVED G Y C T GS++ +RV P +V+ V
Sbjct: 68 AARLGAELRDASLRMFGLRVEDEGSYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQ 127
Query: 111 SNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYT--SSLSI 168
+C+ T G PP I+W + + +++ SG T S +
Sbjct: 128 LTG-------EPVPMARCVSTGGRPPAQITWHSDLGGMPQTSQVPGFLSGTVTVTSLWIL 180
Query: 169 ATLSTGHSGNYTCVASNTVASDNHSSNLRVN 199
S TC + + +
Sbjct: 181 VPSSQVDGKQVTCKVEHESFEKPQLLTVSLT 211
Score = 37.0 bits (85), Expect = 0.004
Identities = 20/94 (21%), Positives = 32/94 (34%), Gaps = 2/94 (2%)
Query: 193 SSNLRVNEYTSSLSIATLSTGHSGNYTC-VASNTVASDNHSSNLRVNVPPHI-GPFTFGE 250
++ L +SL + L G+YTC + S + LRV P +
Sbjct: 68 AARLGAELRDASLRMFGLRVEDEGSYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQ 127
Query: 251 LMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQP 284
L CV G P + W+ + + Q
Sbjct: 128 LTGEPVPMARCVSTGGRPPAQITWHSDLGGMPQT 161
>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B
Length = 171
Score = 69.6 bits (170), Expect = 9e-15
Identities = 23/190 (12%), Positives = 52/190 (27%), Gaps = 34/190 (17%)
Query: 17 GPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVN------ISSVR 70
V+ + P + WK +A + S + + I ++
Sbjct: 10 YGNVTFHV-PSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLT 68
Query: 71 VEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLV 130
D Y+ + N + + V + +P + + + C V
Sbjct: 69 SSDEDEYEMESPNITDTMKFF--LYVLEMVSKPM----IYWECSNATLT--------CEV 114
Query: 131 TKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASD 190
+G + + + S + T+ T + C A N V+ +
Sbjct: 115 LEGTDV-ELKLYQGKEHLRSLRQKTMSYQ------------WTNLRAPFKCKAVNRVSQE 161
Query: 191 NHSSNLRVNE 200
+ + E
Sbjct: 162 SEMEVVNCPE 171
Score = 40.7 bits (95), Expect = 2e-04
Identities = 18/108 (16%), Positives = 34/108 (31%), Gaps = 13/108 (12%)
Query: 184 SNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVP--- 240
S A + + + ++ + SL+I L++ Y + N + L V
Sbjct: 41 SEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNITDTMKF--FLYVLEMVSK 98
Query: 241 PHIGPFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQPDISI 288
P I E + C V G + L+ Y+ +
Sbjct: 99 PMI-------YWECSNATLTCEVLEGT-DVELKLYQGKEHLRSLRQKT 138
>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet,
C2-SET immunoglobulin superfamily, H-bonded G strand
PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4
b.1.1.4 PDB: 1xmw_A
Length = 186
Score = 68.4 bits (166), Expect = 4e-14
Identities = 31/195 (15%), Positives = 53/195 (27%), Gaps = 44/195 (22%)
Query: 16 PGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSG 75
G V L C + ++ W+ +G L +++ L VEDSG
Sbjct: 13 SGTSVELTCPL--DSDENLKWEKNGQELPQKH---DKHLVLQ---------DFSEVEDSG 58
Query: 76 IYQCTATNRVGSQTHSADMRVYDAPGQPQD------------------VKLVTSNSRSIK 117
Y C + RV A +D + +
Sbjct: 59 YYVCYTPASNKNTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDG 118
Query: 118 VHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSG 177
+ C G TI WLK+G I ++ ++ + G
Sbjct: 119 SRGDGSVLLTC----GLTDKTIKWLKDGSI--------ISPLNATKNTWNLGNNAKDPRG 166
Query: 178 NYTCVASNTVASDNH 192
Y C + ++
Sbjct: 167 TYQCQGAKETSNPLQ 181
Score = 43.7 bits (102), Expect = 2e-05
Identities = 23/167 (13%), Positives = 44/167 (26%), Gaps = 31/167 (18%)
Query: 120 SGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLS-TGHSGN 178
SG + C + D + W KNG + ++ L + S SG
Sbjct: 13 SGTSVELTCPL---DSDENLKWEKNGQEL----------PQKHDKHLVLQDFSEVEDSGY 59
Query: 179 YTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVN 238
Y C + + RV + A + + + + +
Sbjct: 60 YVCYTPASNKNTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGS 119
Query: 239 VPPHIGPFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQPD 285
+ C + ++W K+G IS +
Sbjct: 120 -------------RGDGSVLLTCGLTDKT----IKWLKDGSIISPLN 149
Score = 39.9 bits (92), Expect = 3e-04
Identities = 13/79 (16%), Positives = 21/79 (26%), Gaps = 14/79 (17%)
Query: 12 QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRV 71
+ V L C T I W DG ++ + N+ +
Sbjct: 117 DGSRGDGSVLLTCGLTDKT---IKWLKDGSIISPLNATKNTW-----------NLGNNAK 162
Query: 72 EDSGIYQCTATNRVGSQTH 90
+ G YQC +
Sbjct: 163 DPRGTYQCQGAKETSNPLQ 181
>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like
protein 3, nephrin- like 2, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 66.8 bits (163), Expect = 4e-14
Identities = 25/119 (21%), Positives = 45/119 (37%), Gaps = 14/119 (11%)
Query: 86 GSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNG 145
GS S + V P + S++++ G++ ++C + PP I+W
Sbjct: 1 GSSGSSGTLTVNGPP--------IISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKE 52
Query: 146 LPILSDAE-----ITIRSSGEYTSSLSIATLSTGH-SGNYTCVASNTVASDNHSSNLRV 198
+ S TI + S+L+I+ + Y C A N+ SD L+
Sbjct: 53 NVLESGTSGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKE 111
Score = 64.9 bits (158), Expect = 2e-13
Identities = 28/99 (28%), Positives = 39/99 (39%), Gaps = 6/99 (6%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTP-HISWKLDGYPL---AGDRFVMGQYMSLHG 58
P +I Q G +KC P P I+W L R+ + + G
Sbjct: 14 PPIISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEG 73
Query: 59 DVISHVNISSVRVED-SGIYQCTATNRVGSQTHSADMRV 96
VIS + IS++ D IY CTA N GS T ++
Sbjct: 74 -VISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKE 111
Score = 40.3 bits (94), Expect = 1e-04
Identities = 14/55 (25%), Positives = 21/55 (38%)
Query: 228 SDNHSSNLRVNVPPHIGPFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAIS 282
S S L VN PP I + G + Q+ C ++S P + W +
Sbjct: 2 SSGSSGTLTVNGPPIISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLE 56
>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily,
immune system; HET: NAG; 3.00A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.3 PDB: 1i8l_A*
Length = 201
Score = 68.5 bits (167), Expect = 4e-14
Identities = 29/204 (14%), Positives = 64/204 (31%), Gaps = 31/204 (15%)
Query: 17 GPPVSLKCIATGNPTPH----ISWKLDG----YPLAGDRFVMGQY-----MSLHGDVISH 63
+L C + I W+ + ++GD + +Y + ++
Sbjct: 9 KEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNL--S 66
Query: 64 VNISSVRVEDSGIYQCTATNRVGSQTHSA-----DMRVYDAPGQPQDVKLVTSNSRSIKV 118
+ I ++R D G Y+C + V P ++
Sbjct: 67 IVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPS--------ISDFEI 118
Query: 119 HSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIR--SSGEYTSSLSIATLSTGHS 176
+ + + C + G P +SWL+NG + + + + Y S S + +
Sbjct: 119 PTSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDPETELYAVS-SKLDFNMTTN 177
Query: 177 GNYTCVASNTVASDNHSSNLRVNE 200
++ C+ N + N +
Sbjct: 178 HSFMCLIKYGHLRVNQTFNWNTAK 201
Score = 31.5 bits (71), Expect = 0.19
Identities = 16/91 (17%), Positives = 28/91 (30%), Gaps = 5/91 (5%)
Query: 204 SLSIATLSTGHSGNYTCVASNTVASDNHSS-----NLRVNVPPHIGPFTFGELMEGVRTQ 258
S+ I L G Y CV L V + E+ +
Sbjct: 66 SIVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPSISDFEIPTSNIRR 125
Query: 259 VACVVQSGDLPLSLQWYKNGLAISQPDISIT 289
+ C G L W +NG ++ + +++
Sbjct: 126 IICSTSGGFPEPHLSWLENGEELNAINTTVS 156
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 126
Score = 66.6 bits (162), Expect = 5e-14
Identities = 22/114 (19%), Positives = 41/114 (35%), Gaps = 8/114 (7%)
Query: 1 SHPQLIYKFIQQTLQPGPPVSLKCIATGNP---TPHISW----KLDGYPLAGDRFVMGQY 53
S I K T++ G ++ P I W +D AG + +
Sbjct: 6 SGILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKET 65
Query: 54 MSLHGDVISHV-NISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDV 106
H V + I + +G Y+C T + + S D+ V+++ G ++
Sbjct: 66 FERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGTTPNI 119
Score = 60.8 bits (147), Expect = 5e-12
Identities = 24/98 (24%), Positives = 34/98 (34%), Gaps = 12/98 (12%)
Query: 114 RSIKVHSGDRAGVQCLVTKGDPPL---TISWLKNGLPILSD--------AEITIRSSGEY 162
+ V G+ V + L TI W K L+ E R S Y
Sbjct: 15 QGGTVKVGEDITFIAKVK-AEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVY 73
Query: 163 TSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNE 200
T + I +GNY C + D+ S +L V+E
Sbjct: 74 TFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHE 111
>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF
receptor, cancer, immune system-transfer complex; HET:
NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X
Length = 122
Score = 65.9 bits (160), Expect = 7e-14
Identities = 21/96 (21%), Positives = 38/96 (39%), Gaps = 6/96 (6%)
Query: 11 QQTLQPGPPVSLKCIATGNPTPHISW------KLDGYPLAGDRFVMGQYMSLHGDVISHV 64
L G + L C A I + + +R + Q S +S +
Sbjct: 17 GIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTL 76
Query: 65 NISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAP 100
I V D G+Y C A++ + ++ +S +RV++ P
Sbjct: 77 TIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKP 112
Score = 56.3 bits (135), Expect = 3e-10
Identities = 21/105 (20%), Positives = 45/105 (42%), Gaps = 10/105 (9%)
Query: 104 QDVKLVTSNSRSIKVHSGDRAGVQCLVT-KGDPPLTISWLKNGLPILSDAEITIRSSG-- 160
DV L S+ I++ G++ + C + + + +W +
Sbjct: 8 YDVVLSPSHG--IELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQS 65
Query: 161 -----EYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNE 200
++ S+L+I ++ G YTC AS+ + + +S+ +RV+E
Sbjct: 66 GSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHE 110
>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain,
integrin, allosteric mobility, cell adhesi immune
system; HET: NAG; 2.10A {Homo sapiens}
Length = 196
Score = 67.8 bits (165), Expect = 7e-14
Identities = 21/183 (11%), Positives = 49/183 (26%), Gaps = 20/183 (10%)
Query: 11 QQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVR 70
++ G + L C + + + G + +R
Sbjct: 11 VAFVERGGSLWLNCSTNCPRPERGGL----------ETSLRRNGTQRGLRWLARQLVDIR 60
Query: 71 VEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLV 130
E C + +R + P + + + V G+ + C V
Sbjct: 61 -EPETQPVCFFRCARRTLQARGLIRTFQRPDRVE----LMPLPPWQPV--GENFTLSCRV 113
Query: 131 TKGDPP--LTISWLKNGLPILSD-AEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTV 187
P LT++ L+ ++ + + ++ H N++C A +
Sbjct: 114 PGAGPRASLTLTLLRGAQELIRRSFAGEPPRARGAVLTATVLARREDHGANFSCRAELDL 173
Query: 188 ASD 190
Sbjct: 174 RPH 176
Score = 34.7 bits (79), Expect = 0.016
Identities = 8/71 (11%), Positives = 14/71 (19%), Gaps = 4/71 (5%)
Query: 212 TGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGPFTFGE--LMEGVRTQVACVVQSGD-- 267
C + +R P G ++C V
Sbjct: 60 REPETQPVCFFRCARRTLQARGLIRTFQRPDRVELMPLPPWQPVGENFTLSCRVPGAGPR 119
Query: 268 LPLSLQWYKNG 278
L+L +
Sbjct: 120 ASLTLTLLRGA 130
>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG
superfamily, rossmann fold, metal mediated protein
interf immune system; HET: NAG; 3.30A {Homo sapiens}
SCOP: b.1.1.3 b.1.1.4
Length = 291
Score = 69.5 bits (169), Expect = 7e-14
Identities = 33/227 (14%), Positives = 62/227 (27%), Gaps = 35/227 (15%)
Query: 11 QQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVR 70
+ L G V + C + + + + PL L +
Sbjct: 8 KVILPRGGSVLVTCSTSCDQPKLLGIE---TPLPKK--------ELLLPGNNRKVYELSN 56
Query: 71 VEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLV 130
V++ C + G T + VY P+ V+L S G ++C V
Sbjct: 57 VQEDSQPMCYSNCPDGQSTAKTFLTVYWT---PERVELAPLPSW---QPVGKNLTLRCQV 110
Query: 131 TKGDPP--LTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVA 188
G P LT+ L+ + + + + + ++ H N++C +
Sbjct: 111 EGGAPRANLTVVLLRGEKELKREPAVGEPA----EVTTTVLVRRDHHGANFSCRTELDLR 166
Query: 189 SDNH--------SSNLRVNEY----TSSLSIATLSTGHSGNYTCVAS 223
L+ +S L G C
Sbjct: 167 PQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLD 213
Score = 52.6 bits (125), Expect = 4e-08
Identities = 23/209 (11%), Positives = 53/209 (25%), Gaps = 22/209 (10%)
Query: 12 QTLQPGPPVSLKCIATGN---PTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISS 68
G ++L+C G + L + V +
Sbjct: 96 SWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAV-------GEPAEVTTTVLV 148
Query: 69 VRVEDSGIYQCTATNRVGSQ-----THSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDR 123
R + C + Q +++ P + S + +
Sbjct: 149 RRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRV---LEVDTQ 205
Query: 124 AGVQCLVTKGDPPLTISW-LKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCV 182
V C + P L G L+ T+ + S+ + +++ G
Sbjct: 206 GTVVCSLDGLFPVSEAQVHLALGDQRLN---PTVTYGNDSFSAKASVSVTAEDEGTQRLT 262
Query: 183 ASNTVASDNHSSNLRVNEYTSSLSIATLS 211
+ + + + + V Y+ L+
Sbjct: 263 CAVILGNQSQETLQTVTIYSFPAPNVILT 291
Score = 38.3 bits (88), Expect = 0.002
Identities = 15/124 (12%), Positives = 28/124 (22%), Gaps = 9/124 (7%)
Query: 169 ATLSTGHSGNYTCVASNTVA-----SDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVAS 223
L G S TC S + + + C ++
Sbjct: 9 VILPRGGSVLVTCSTSCDQPKLLGIETPLPKKELLLPGNNRKVYELSNVQEDSQPMCYSN 68
Query: 224 NTVASDNHSSNLRVNVPPHIGPFTF--GELMEGVRTQVACVVQSGDLP--LSLQWYKNGL 279
+ L V P G + C V+ G L++ +
Sbjct: 69 CPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEK 128
Query: 280 AISQ 283
+ +
Sbjct: 129 ELKR 132
>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 106
Score = 64.7 bits (158), Expect = 1e-13
Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 5/87 (5%)
Query: 114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLST 173
+ V + ++A +C V+ D +T W KNG+ + ITI G L I +
Sbjct: 16 ADLTVKAAEQAVFKCEVS--DEKVTGKWYKNGVEVRPSKRITISHVGR-FHKLVIDDVRP 72
Query: 174 GHSGNYTCVASNTVASDNHSSNLRVNE 200
G+YT V S S+ L E
Sbjct: 73 EDEGDYTFVPDGYALSL--SAKLNFLE 97
Score = 58.6 bits (142), Expect = 2e-11
Identities = 18/98 (18%), Positives = 29/98 (29%), Gaps = 13/98 (13%)
Query: 8 KFIQ----QTLQPGPPVSLKCIATGNPTPHISWKLDGYPL-AGDRFVMGQYMSLHGDVIS 62
+ +Q T++ KC + W +G + R + H
Sbjct: 10 EVLQDIADLTVKAAEQAVFKCEVSD-EKVTGKWYKNGVEVRPSKRITI-----SHVGRFH 63
Query: 63 HVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAP 100
+ I VR ED G Y S SA + +
Sbjct: 64 KLVIDDVRPEDEGDYTFVPDGYALSL--SAKLNFLEIK 99
>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 115
Score = 64.7 bits (158), Expect = 2e-13
Identities = 24/102 (23%), Positives = 38/102 (37%), Gaps = 21/102 (20%)
Query: 8 KFIQ----QTLQPGPPVSLKCIATGNPTPHISWKLDGYPL-AGDRFVM----GQYMSLHG 58
I+ +Q G + +C + + W LD PL A + + G Y L
Sbjct: 15 HIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQPGGYHVLT- 73
Query: 59 DVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAP 100
+ + ++DSG A G Q SA +RV + P
Sbjct: 74 -------LRQLALKDSGTIYFEA----GDQRASAALRVTEKP 104
Score = 60.9 bits (148), Expect = 4e-12
Identities = 18/87 (20%), Positives = 33/87 (37%), Gaps = 5/87 (5%)
Query: 114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLST 173
+ V G A +C ++ + W + P+ ++ I + L++ L+
Sbjct: 21 EDVDVQEGSSATFRCRIS-PANYEPVHWFLDKTPLHANELNEIDAQPGGYHVLTLRQLAL 79
Query: 174 GHSGNYTCVASNTVASDNHSSNLRVNE 200
SG A + A S+ LRV E
Sbjct: 80 KDSGTIYFEAGDQRA----SAALRVTE 102
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed
death-1 ligand 1, complex, costimulatory, immune system;
2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Length = 222
Score = 66.9 bits (163), Expect = 3e-13
Identities = 34/245 (13%), Positives = 72/245 (29%), Gaps = 65/245 (26%)
Query: 20 VSLKCIATGNPTP-----HISWKLDGYPL-------AGDRFVMGQY---MSLHGDVISH- 63
++++C + W+++ + + Y L D +S
Sbjct: 19 MTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLG 78
Query: 64 ---VNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHS 120
+ I+ V+++D+G+Y+C + G+ ++V + +
Sbjct: 79 NAALQITDVKLQDAGVYRCMI-SYGGADYKRITVKVNAPYNKINQ-------RILVVDPV 130
Query: 121 GDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYT 180
+ C G P + W + +LS T S E +
Sbjct: 131 TSEHELTCQAE-GYPKAEVIWTSSDHQVLSGKTTTTNSKRE--------------EKLFN 175
Query: 181 CVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVP 240
TS+L I +T + + C +NH++ L +
Sbjct: 176 --------------------VTSTLRI---NTTTNEIFYCTFRRLDPEENHTAELVIPEL 212
Query: 241 PHIGP 245
P P
Sbjct: 213 PLAHP 217
Score = 59.6 bits (144), Expect = 9e-11
Identities = 18/93 (19%), Positives = 33/93 (35%), Gaps = 5/93 (5%)
Query: 10 IQQTLQPGPPVSLKCIATGNPTPHISW-KLDGYPLAGDRFVMGQYMSLHGDVISHVNIS- 67
I L C A G P + W D L+G S + + +V +
Sbjct: 124 ILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTT---NSKREEKLFNVTSTL 180
Query: 68 SVRVEDSGIYQCTATNRVGSQTHSADMRVYDAP 100
+ + I+ CT + H+A++ + + P
Sbjct: 181 RINTTTNEIFYCTFRRLDPEENHTAELVIPELP 213
>1gxe_A Myosin binding protein C, cardiac-type; cytoskeleton, muscle, IGI,
thick filament, immunoglobulin domain; NMR {Homo
sapiens} SCOP: b.1.1.4
Length = 139
Score = 64.4 bits (156), Expect = 4e-13
Identities = 19/133 (14%), Positives = 37/133 (27%), Gaps = 12/133 (9%)
Query: 105 DVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTS 164
+ +I V +G++ + ++ GDP T+ W K + E T
Sbjct: 17 HLDCPGRIPDTIVVVAGNKLRLDVPIS-GDPAPTVIWQKAITQGNKAPARPAPDAPEDTG 75
Query: 165 SLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASN 224
+ + + S ++ G YT N
Sbjct: 76 DSDEWVF-----------DKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKN 124
Query: 225 TVASDNHSSNLRV 237
V D + ++V
Sbjct: 125 PVGEDQVNLTVKV 137
Score = 62.1 bits (150), Expect = 3e-12
Identities = 18/112 (16%), Positives = 32/112 (28%), Gaps = 25/112 (22%)
Query: 12 QTLQPGPPVSLKCIATGNPTPHISWKLDG----------YPLAGDRFVMGQYMSLHGDVI 61
+ G + L +G+P P + W+ P A + ++
Sbjct: 28 IVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLL 87
Query: 62 SHVN---------------ISSVRVEDSGIYQCTATNRVGSQTHSADMRVYD 98
+ ED G+Y T N VG + ++V D
Sbjct: 88 CETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVID 139
>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498;
beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 102
Score = 63.2 bits (154), Expect = 4e-13
Identities = 20/104 (19%), Positives = 38/104 (36%), Gaps = 13/104 (12%)
Query: 86 GSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNG 145
GS S + ++V+ +G A + C V ++W K+G
Sbjct: 1 GSSGSSGKVVFAKEQPAHREVQ----------AEAGASATLSCEVA--QAQTEVTWYKDG 48
Query: 146 LPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVAS 189
+ S +++ + + G T L + +G Y+C A S
Sbjct: 49 KKLSSSSKVRVEAVGC-TRRLVVQQAGQAEAGEYSCEAGGQQLS 91
Score = 52.4 bits (126), Expect = 3e-09
Identities = 17/89 (19%), Positives = 29/89 (32%), Gaps = 17/89 (19%)
Query: 12 QTLQPGPPVSLKCIATGNPTPHISWKLDGYPL-AGDRFVM---GQYMSLHGDVISHVNIS 67
+ G +L C ++W DG L + + + G L +
Sbjct: 21 VQAEAGASATLSCEVA-QAQTEVTWYKDGKKLSSSSKVRVEAVGCTRRLV--------VQ 71
Query: 68 SVRVEDSGIYQCTATNRVGSQTHSADMRV 96
++G Y C A G Q S ++V
Sbjct: 72 QAGQAEAGEYSCEA----GGQQLSFRLQV 96
Score = 27.4 bits (61), Expect = 1.9
Identities = 10/59 (16%), Positives = 21/59 (35%), Gaps = 3/59 (5%)
Query: 232 SSNLRVNVPPHIGPFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQ-PDISIT 289
S+ +V + G ++C V + + WYK+G +S + +
Sbjct: 4 GSSGKVVFAKEQPAHREVQAEAGASATLSCEV-AQAQT-EVTWYKDGKKLSSSSKVRVE 60
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states,
actin-binding, cardiomyopathy, cell adhesion, disease
mutation, immunoglobulin domain; 1.30A {Homo sapiens}
PDB: 2v6h_A 2avg_A
Length = 108
Score = 63.1 bits (153), Expect = 5e-13
Identities = 21/98 (21%), Positives = 31/98 (31%), Gaps = 12/98 (12%)
Query: 114 RSIKVHSGDRAGVQCLVTKGDPPL---TISWLKNG---LPILSDAEITIRSSGE-----Y 162
+ +V G V G L + W K L + + S + Y
Sbjct: 12 QDGEVTVGGSITFSARV-AGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVY 70
Query: 163 TSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNE 200
L I +G+Y C S D + NL V+E
Sbjct: 71 LFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTVHE 108
Score = 59.6 bits (144), Expect = 9e-12
Identities = 13/102 (12%), Positives = 32/102 (31%), Gaps = 12/102 (11%)
Query: 9 FIQ----QTLQPGPPVSLKCIATGNP---TPHISW----KLDGYPLAGDRFVMGQYMSLH 57
F+ + G ++ G P + W +D G +
Sbjct: 7 FVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRA 66
Query: 58 GDVISHV-NISSVRVEDSGIYQCTATNRVGSQTHSADMRVYD 98
V +I+ + +G Y+C + + + ++ V++
Sbjct: 67 SKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTVHE 108
>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac
muscle, hypertrophic cardiomyopathy, actin-binding, cell
adhesion, disease mutation; NMR {Homo sapiens}
Length = 95
Score = 62.4 bits (152), Expect = 8e-13
Identities = 16/87 (18%), Positives = 38/87 (43%), Gaps = 7/87 (8%)
Query: 114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLST 173
RS++V +G A + + + + W + G I + + + + G +L++ +
Sbjct: 16 RSVEVAAGSPAVFEAETER--AGVKVRWQRGGSDISASNKYGLATEGT-RHTLTVREVGP 72
Query: 174 GHSGNYTCVASNTVASDNHSSNLRVNE 200
G+Y +A ++ +L+V E
Sbjct: 73 ADQGSYAVIAGSSKV----KFDLKVIE 95
Score = 56.2 bits (136), Expect = 1e-10
Identities = 17/96 (17%), Positives = 31/96 (32%), Gaps = 21/96 (21%)
Query: 9 FIQ----QTLQPGPPVSLKCIATGNPTPHISWKLDGYPL-AGDRFVM---GQYMSLHGDV 60
F + + G P + + W+ G + A +++ + G +L
Sbjct: 11 FSKKPRSVEVAAGSPAVFEAETER-AGVKVRWQRGGSDISASNKYGLATEGTRHTLT--- 66
Query: 61 ISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRV 96
+ V D G Y A GS D++V
Sbjct: 67 -----VREVGPADQGSYAVIA----GSSKVKFDLKV 93
>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton,
immunoglobulin domain, muscle protein, phosphorylation,
repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A
1tiu_A 2rq8_A
Length = 93
Score = 61.9 bits (151), Expect = 1e-12
Identities = 21/100 (21%), Positives = 43/100 (43%), Gaps = 8/100 (8%)
Query: 101 GQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSG 160
G ++ V ++V G+ A + ++ +P + W G P+ + + I G
Sbjct: 1 GAMALIE-VEKPLYGVEVFVGETAHFEIELS--EPDVHGQWKLKGQPLAASPDCEIIEDG 57
Query: 161 EYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNE 200
+ L + G +G + A+NT + ++NL+V E
Sbjct: 58 K-KHILILHNCQLGMTGEVSFQAANTKS----AANLKVKE 92
Score = 56.2 bits (136), Expect = 1e-10
Identities = 15/88 (17%), Positives = 28/88 (31%), Gaps = 17/88 (19%)
Query: 8 KFIQ----QTLQPGPPVSLKCIATGNPTPHISWKLDGYPL-AGDRFVM---GQYMSLHGD 59
+ + + G + + P H WKL G PL A + G+ L
Sbjct: 7 EVEKPLYGVEVFVGETAHFEIELS-EPDVHGQWKLKGQPLAASPDCEIIEDGKKHILI-- 63
Query: 60 VISHVNISSVRVEDSGIYQCTATNRVGS 87
+ + ++ +G A N +
Sbjct: 64 ------LHNCQLGMTGEVSFQAANTKSA 85
>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 103
Score = 61.9 bits (151), Expect = 1e-12
Identities = 19/87 (21%), Positives = 36/87 (41%), Gaps = 7/87 (8%)
Query: 114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLST 173
V G+ ++C +++ P + WLK+ I + + G + L I S
Sbjct: 16 EDQWVAPGEDVELRCELSRAGTP--VHWLKDRKAIRKSQKYDVVCEGT-MAMLVIRGASL 72
Query: 174 GHSGNYTCVASNTVASDNHSSNLRVNE 200
+G YTC + + +++L V E
Sbjct: 73 KDAGEYTCEVEASKS----TASLHVEE 95
Score = 60.8 bits (148), Expect = 3e-12
Identities = 21/105 (20%), Positives = 36/105 (34%), Gaps = 17/105 (16%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPL-AGDRFVM---GQYMSLHG 58
+I Q + PG V L+C + TP + W D + ++ + G L
Sbjct: 9 AAIIKPLEDQWVAPGEDVELRCELSRAGTP-VHWLKDRKAIRKSQKYDVVCEGTMAMLV- 66
Query: 59 DVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQP 103
I ++D+G Y C +A + V + P
Sbjct: 67 -------IRGASLKDAGEYTCEVEASKS----TASLHVEEKASGP 100
Score = 25.7 bits (57), Expect = 8.6
Identities = 7/41 (17%), Positives = 15/41 (36%), Gaps = 3/41 (7%)
Query: 250 ELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQ-PDISIT 289
+ G ++ C + P+ W K+ AI + +
Sbjct: 19 WVAPGEDVELRCELSRAGTPV--HWLKDRKAIRKSQKYDVV 57
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 65.9 bits (161), Expect = 2e-12
Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 4/86 (4%)
Query: 11 QQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVR 70
Q + G V C A G+P P I W L + +++ D + + +
Sbjct: 394 QVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAK--SNGRLTVFPD--GTLEVRYAQ 449
Query: 71 VEDSGIYQCTATNRVGSQTHSADMRV 96
V+D+G Y C A N G+ + A + V
Sbjct: 450 VQDNGTYLCIAANAGGNDSMPAHLHV 475
Score = 57.0 bits (138), Expect = 2e-09
Identities = 22/96 (22%), Positives = 40/96 (41%), Gaps = 8/96 (8%)
Query: 107 KLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLK-NG--LPILSDAEITIRSSGEYT 163
++ ++ + V G C GDPP I WL + S+ +T+ G
Sbjct: 386 RIRDRKAQQVFVDEGHTVQFVCRAD-GDPPPAILWLSPRKHLVSAKSNGRLTVFPDG--- 441
Query: 164 SSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVN 199
+L + +G Y C+A+N +D+ ++L V
Sbjct: 442 -TLEVRYAQVQDNGTYLCIAANAGGNDSMPAHLHVR 476
>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} PDB: 2yz8_A
Length = 103
Score = 61.2 bits (149), Expect = 2e-12
Identities = 24/101 (23%), Positives = 44/101 (43%), Gaps = 15/101 (14%)
Query: 8 KFIQ----QTLQPGPPVSLKCIATGNPTPHISWKLDGYPL-AGDRFVMGQYMSLHGDVIS 62
+F + + G +L+C+ + P + W L GD++ + Q ++
Sbjct: 10 RFQEALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQEGAML----- 63
Query: 63 HVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQP 103
+ + ++R +DSG Y C+ G QT SA + V P P
Sbjct: 64 ELVVRNLRPQDSGRYSCSF----GDQTTSATLTVTALPSGP 100
Score = 59.3 bits (144), Expect = 1e-11
Identities = 16/87 (18%), Positives = 33/87 (37%), Gaps = 7/87 (8%)
Query: 114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLST 173
+ ++V G A ++C+++ + W + + ++R G L + L
Sbjct: 16 KDLEVLEGGAATLRCVLS--SVAAPVKWCYGNNVLRPGDKYSLRQEGA-MLELVVRNLRP 72
Query: 174 GHSGNYTCVASNTVASDNHSSNLRVNE 200
SG Y+C + S+ L V
Sbjct: 73 QDSGRYSCSFGDQTT----SATLTVTA 95
Score = 25.7 bits (57), Expect = 9.3
Identities = 9/41 (21%), Positives = 17/41 (41%), Gaps = 3/41 (7%)
Query: 250 ELMEGVRTQVACVVQSGDLPLSLQWYKNGLAI-SQPDISIT 289
E++EG + CV+ S P+ +W + S+
Sbjct: 19 EVLEGGAATLRCVLSSVAAPV--KWCYGNNVLRPGDKYSLR 57
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain,
SLOW-type myosin-binding protein C, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 100
Score = 61.2 bits (149), Expect = 2e-12
Identities = 24/102 (23%), Positives = 36/102 (35%), Gaps = 20/102 (19%)
Query: 8 KFIQ----QTLQPGPPVSLKCIATGNPTPHISWKLDGYPL-AGDRFVM---GQYMSLHGD 59
K + QT+ G + LKC + N W +G P+ DR + G+ L
Sbjct: 9 KILTPLTDQTVNLGKEICLKCEISENIPGK--WTKNGLPVQESDRLKVVQKGRIHKLV-- 64
Query: 60 VISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPG 101
I++ ED G Y + T A + V P
Sbjct: 65 ------IANALTEDEGDYVFAPDA--YNVTLPAKVHVISGPS 98
Score = 58.9 bits (143), Expect = 1e-11
Identities = 20/91 (21%), Positives = 33/91 (36%), Gaps = 6/91 (6%)
Query: 114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLST 173
V+ G ++C ++ + P W KNGLP+ + + G L IA T
Sbjct: 15 TDQTVNLGKEICLKCEIS-ENIPGK--WTKNGLPVQESDRLKVVQKGR-IHKLVIANALT 70
Query: 174 GHSGNYTCVASNTVASDNHSSNLRVNEYTSS 204
G+Y + + + V SS
Sbjct: 71 EDEGDYVFAPDAYNVTL--PAKVHVISGPSS 99
>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2;
IG domain, structural protein; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 104
Score = 61.2 bits (149), Expect = 2e-12
Identities = 23/112 (20%), Positives = 35/112 (31%), Gaps = 12/112 (10%)
Query: 89 THSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPI 148
H + M + + +V G + + + D + WLKNG I
Sbjct: 5 HHHSSMDEKKST------AFQKKLEPAYQVSKGHKIRLTVELA--DHDAEVKWLKNGQEI 56
Query: 149 LSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNE 200
I S +L+I+ S Y CV S+ L V E
Sbjct: 57 QMSGSKYIFESIGAKRTLTISQCSLADDAAYQCVVGGEKC----STELFVKE 104
Score = 53.5 bits (129), Expect = 1e-09
Identities = 15/90 (16%), Positives = 28/90 (31%), Gaps = 19/90 (21%)
Query: 8 KFIQ-----QTLQPGPPVSLKCIATGNPTPHISWKLDGYPL--AGDRFVM---GQYMSLH 57
F + + G + L + + W +G + +G +++ G +L
Sbjct: 17 AFQKKLEPAYQVSKGHKIRLTVELA-DHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLT 75
Query: 58 GDVISHVNISSVRVEDSGIYQCTATNRVGS 87
IS + D YQC S
Sbjct: 76 --------ISQCSLADDAAYQCVVGGEKCS 97
Score = 28.1 bits (63), Expect = 1.2
Identities = 8/58 (13%), Positives = 22/58 (37%), Gaps = 8/58 (13%)
Query: 230 NHSSNLRVNVPPHIGPFTFG-----ELMEGVRTQVACVVQSGDLPLSLQWYKNGLAIS 282
+H + ++ F ++ +G + ++ + + ++W KNG I
Sbjct: 3 HHHHHSSMDEKKST-AFQKKLEPAYQVSKGHKIRLTVEL-ADHDA-EVKWLKNGQEIQ 57
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase,
glycoprotein, receptor protei tyrosine phosphatase, cell
adhesion; HET: NAG; 3.10A {Homo sapiens}
Length = 731
Score = 66.0 bits (160), Expect = 3e-12
Identities = 27/181 (14%), Positives = 54/181 (29%), Gaps = 19/181 (10%)
Query: 20 VSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQC 79
+++ P + W + G P + + IS+ +
Sbjct: 94 LNVYVKVNNGPLGNPIWNISGDP--TRTWNRA-----------ELAISTFWPNFYQVIFE 140
Query: 80 TATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTI 139
T+ +++V P L N ++V++G A QC G
Sbjct: 141 VITSGHQGYLAIDEVKVLGHPCTRTPHFLRIQN---VEVNAGQFATFQCSAI-GRTVAGD 196
Query: 140 SWLKNG--LPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLR 197
G + EI + SS + +S ++ + +G Y C+ +
Sbjct: 197 RLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAEL 256
Query: 198 V 198
V
Sbjct: 257 V 257
Score = 64.0 bits (155), Expect = 1e-11
Identities = 18/120 (15%), Positives = 39/120 (32%), Gaps = 2/120 (1%)
Query: 1 SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDV 60
+ + + G + +C A G L G + + S
Sbjct: 163 TRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTS-SRRF 221
Query: 61 ISHVNISSVRVEDSGIYQCTATNRVGSQTHS-ADMRVYDAPGQPQDVKLVTSNSRSIKVH 119
I+ N+ + D+G Y+C G + A++ V + P +L + + + +
Sbjct: 222 IASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKEPPVPIAPPQLASVGATYLWIQ 281
>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding
domain of CD48, immune system; HET: NAG; 2.60A {Rattus
norvegicus}
Length = 180
Score = 63.0 bits (153), Expect = 3e-12
Identities = 20/133 (15%), Positives = 38/133 (28%), Gaps = 26/133 (19%)
Query: 66 ISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAG 125
I +V ED G Y + M VY+ +P + + +
Sbjct: 73 IYNVSKEDRGDYYMRMLHE-TEDQWKITMEVYEMVSKPM----IYWECSNATL------- 120
Query: 126 VQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASN 185
C V +G + + + S + T+ T + C A N
Sbjct: 121 -TCEVLEGTDV-ELKLYQGKEHLRSLRQKTMSYQ------------WTNLRAPFKCKAVN 166
Query: 186 TVASDNHSSNLRV 198
V+ ++ +
Sbjct: 167 RVSQESEMEVVNC 179
Score = 45.3 bits (107), Expect = 5e-06
Identities = 9/72 (12%), Positives = 17/72 (23%), Gaps = 15/72 (20%)
Query: 20 VSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQC 79
+L C + L + +S ++C
Sbjct: 118 ATLTCEVLEGTDVELKLYQGKEHLR---------------SLRQKTMSYQWTNLRAPFKC 162
Query: 80 TATNRVGSQTHS 91
A NRV ++
Sbjct: 163 KAVNRVSQESEM 174
Score = 44.5 bits (105), Expect = 9e-06
Identities = 25/188 (13%), Positives = 50/188 (26%), Gaps = 42/188 (22%)
Query: 110 TSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIA 169
+ ++ +G + L ++WL ++ +I
Sbjct: 3 DQSVPNVNAITGSNVTLTILKHPLASYQRLTWLHT-----TNQKILEYFPNG-------- 49
Query: 170 TLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASD 229
TV + +++ +L I +S G+Y + D
Sbjct: 50 --------------KKTVFESVFKDRVDLDKTNGALRIYNVSKEDRGDYYMRMLHE-TED 94
Query: 230 NHSSNLRVNVP---PHIGPFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNG---LAISQ 283
+ V P I E + C V G L+ Y+ ++ Q
Sbjct: 95 QWKITMEVYEMVSKPMI-------YWECSNATLTCEVLEGTDV-ELKLYQGKEHLRSLRQ 146
Query: 284 PDISITLT 291
+S T
Sbjct: 147 KTMSYQWT 154
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 64.5 bits (157), Expect = 6e-12
Identities = 17/104 (16%), Positives = 34/104 (32%), Gaps = 11/104 (10%)
Query: 11 QQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISH---VNIS 67
G ++++C + + +G V +
Sbjct: 255 AWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQ--------GSNGSVSVRNGDLFFK 306
Query: 68 SVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTS 111
V+VED G+Y C A ++T S +++VY+ L +
Sbjct: 307 KVQVEDGGVYTCYAMGETFNETLSVELKVYNFTLHGHHDTLNAA 350
Score = 61.0 bits (148), Expect = 8e-11
Identities = 19/116 (16%), Positives = 33/116 (28%), Gaps = 3/116 (2%)
Query: 102 QPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGE 161
+ + H GD ++C + + +LS + S
Sbjct: 242 SLDFFNCSEYKESAWEAHLGDTLTIRCDTK-QQGMTKVWVSPSNEQVLSQG--SNGSVSV 298
Query: 162 YTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGN 217
L + G YTC A ++ S L+V +T TL+
Sbjct: 299 RNGDLFFKKVQVEDGGVYTCYAMGETFNETLSVELKVYNFTLHGHHDTLNAAADPW 354
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 64.4 bits (157), Expect = 6e-12
Identities = 23/103 (22%), Positives = 39/103 (37%), Gaps = 4/103 (3%)
Query: 1 SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDV 60
P ++ + G LKC A+ +SW + + L
Sbjct: 340 YAPVIVEPPADLNVTEGMAAELKCRAST-SLTSVSWITPNGTVMTHGAYKVRIAVLSDGT 398
Query: 61 ISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQP 103
+ N ++V V+D+G+Y C +N VG+ T SA + V
Sbjct: 399 L---NFTNVTVQDTGMYTCMVSNSVGNTTASATLNVTGTHHHH 438
Score = 59.8 bits (145), Expect = 3e-10
Identities = 18/96 (18%), Positives = 39/96 (40%), Gaps = 2/96 (2%)
Query: 109 VTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSI 168
+ + V G A ++C ++SW+ +++ +R + +L+
Sbjct: 344 IVEPPADLNVTEGMAAELKCRA--STSLTSVSWITPNGTVMTHGAYKVRIAVLSDGTLNF 401
Query: 169 ATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSS 204
++ +G YTC+ SN+V + S+ L V
Sbjct: 402 TNVTVQDTGMYTCMVSNSVGNTTASATLNVTGTHHH 437
>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 104
Score = 59.7 bits (145), Expect = 8e-12
Identities = 13/87 (14%), Positives = 29/87 (33%), Gaps = 7/87 (8%)
Query: 114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLST 173
S+ + +R + C ++ +W K+G + + ++ G L +
Sbjct: 18 VSLTFTTSERVVLTCELS--RVDFPATWYKDGQKVEESELLVVKMDGR-KHRLILPEAKV 74
Query: 174 GHSGNYTCVASNTVASDNHSSNLRVNE 200
SG + C A + V +
Sbjct: 75 QDSGEFECRTEGVSA----FFGVTVQD 97
Score = 51.2 bits (123), Expect = 1e-08
Identities = 17/91 (18%), Positives = 30/91 (32%), Gaps = 11/91 (12%)
Query: 12 QTLQPGPPVSLKCIATGNPTPHISWKLDGYPL-AGDRFVMGQYMSLHGDVISHVNISSVR 70
T V L C + P +W DG + + V+ + + +
Sbjct: 20 LTFTTSERVVLTCELSRVDFP-ATWYKDGQKVEESELLVV-----KMDGRKHRLILPEAK 73
Query: 71 VEDSGIYQCTATNRVGSQTHSADMRVYDAPG 101
V+DSG ++C + + V D G
Sbjct: 74 VQDSGEFECRT----EGVSAFFGVTVQDPSG 100
>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion
protein, immunoglobulin fold, I-SET fold, cell adhesion
glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
PDB: 1bqs_A*
Length = 210
Score = 62.2 bits (150), Expect = 8e-12
Identities = 28/190 (14%), Positives = 48/190 (25%), Gaps = 36/190 (18%)
Query: 13 TLQPGPPVSLKCIATG-NPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRV 71
+ G L C + + W+ L + G+ S + + + +
Sbjct: 18 AVALGASRQLTCRLACADRGASVQWRGLDTSLGAVQSDTGR---------SVLTVRNASL 68
Query: 72 EDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVT 131
+G C + + H+ + VY P Q V C
Sbjct: 69 SAAGTRVCVGSCGGRTFQHTVQLLVYAFPNQLTVSPAALVPGDPE---------VACTAH 119
Query: 132 KGDPP----LTISWLKNGLPILSDAEITIRSSGE-------------YTSSLSIATLSTG 174
K P L+ S L G + + E T + L T
Sbjct: 120 KVTPVDPNALSFSLLVGGQELEGAQALGPEVQEEEEEPQGDEDVLFRVTERWRLPPLGTP 179
Query: 175 HSGNYTCVAS 184
C A+
Sbjct: 180 VPPALYCQAT 189
Score = 43.4 bits (101), Expect = 2e-05
Identities = 18/99 (18%), Positives = 34/99 (34%), Gaps = 6/99 (6%)
Query: 109 VTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSI 168
V + V G + C + D ++ W + + S S L++
Sbjct: 10 VEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLGA------VQSDTGRSVLTV 63
Query: 169 ATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSI 207
S +G CV S + H+ L V + + L++
Sbjct: 64 RNASLSAAGTRVCVGSCGGRTFQHTVQLLVYAFPNQLTV 102
Score = 37.6 bits (86), Expect = 0.002
Identities = 23/123 (18%), Positives = 41/123 (33%), Gaps = 11/123 (8%)
Query: 163 TSSLSIATLSTGHSGNYTCVASNT--------VASDNHSSNLRVNEYTSSLSIATLSTGH 214
+ ++ G S TC + D ++ + S L++ S
Sbjct: 11 EPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLGAVQSDTGRSVLTVRNASLSA 70
Query: 215 SGNYTCVASNTVASDNHSSNLRVNVPPHIGPFTFGELMEGVRTQVACVVQSG--DLPLSL 272
+G CV S + H+ L V P+ + L+ G +VAC P +L
Sbjct: 71 AGTRVCVGSCGGRTFQHTVQLLVYAFPNQLTVSPAALVPG-DPEVACTAHKVTPVDPNAL 129
Query: 273 QWY 275
+
Sbjct: 130 SFS 132
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune
system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A
4f8q_A
Length = 226
Score = 62.8 bits (152), Expect = 8e-12
Identities = 18/138 (13%), Positives = 44/138 (31%), Gaps = 10/138 (7%)
Query: 64 VNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDR 123
+ I +V DSG Y C + + +++V +K +
Sbjct: 85 LRIHNVTASDSGKYLCYFQDGDFYEKALVELKVAALGSDLH---------VDVKGYKDGG 135
Query: 124 AGVQCLVTKGDPPLTISWLKN-GLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCV 182
++C T P I W N G I + + + + + +C
Sbjct: 136 IHLECRSTGWYPQPQIQWSNNKGENIPTVEAPVVADGVGLYAVAASVIMRGSSGEGVSCT 195
Query: 183 ASNTVASDNHSSNLRVNE 200
+++ ++++ + +
Sbjct: 196 IRSSLLGLEKTASISIAD 213
Score = 33.1 bits (75), Expect = 0.072
Identities = 23/172 (13%), Positives = 50/172 (29%), Gaps = 23/172 (13%)
Query: 109 VTSNSRSIKVHSGDRAGVQCLVTKGDP--PLTISWLKNGLPILSDAEITIRSSGEYTSSL 166
V S I G+ A + C + + + W+ + L + + + + G+
Sbjct: 7 VLGPSGPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQV----VNVYADGKEVED- 61
Query: 167 SIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTV 226
S + G + + + ++L I ++ SG Y C +
Sbjct: 62 ---RQSAPYRGRTSILRDG------------ITAGKAALRIHNVTASDSGKYLCYFQDGD 106
Query: 227 ASDNHSSNLRVNVPPHIGPFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNG 278
+ L+V + + + C +QW N
Sbjct: 107 FYEKALVELKVAALGSD-LHVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNK 157
>1zxq_A ICAM-2, intercellular adhesion molecule-2; immunoglobulin fold,
cell adhesion, glycoprotein, transmembr; HET: NAG; 2.20A
{Homo sapiens} SCOP: b.1.1.3 b.1.1.4
Length = 192
Score = 61.3 bits (148), Expect = 1e-11
Identities = 26/176 (14%), Positives = 60/176 (34%), Gaps = 21/176 (11%)
Query: 11 QQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVR 70
+ ++P + + C T N + + + H +S++
Sbjct: 11 KLAVEPKGSLEVNCSTTCNQPEVGGL----------ETSLNKILLDEQAQWKHYLVSNI- 59
Query: 71 VEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLV 130
+ QC T ++ ++++ VY P+ V L + V G ++C V
Sbjct: 60 -SHDTVLQCHFTCSGKQESMNSNVSVYQ---PPRQVILTLQPTL---VAVGKSFTIECRV 112
Query: 131 TKGDPP--LTISWLKNGLPILSDA-EITIRSSGEYTSSLSIATLSTGHSGNYTCVA 183
+P LT+ + + + + E T++ + N++C+A
Sbjct: 113 PTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTADREDGHRNFSCLA 168
>2edh_A Obscurin; structural genomics, NPPSFA, national project on P
structural and functional analyses, riken structural
genomics/proteomics initiative; NMR {Homo sapiens}
Length = 113
Score = 59.3 bits (144), Expect = 1e-11
Identities = 24/107 (22%), Positives = 34/107 (31%), Gaps = 22/107 (20%)
Query: 7 YKFIQ----QTLQPGPPVSLKCIATGNPTPHISWKLDGYPL-AGDRFVM---GQYMSLHG 58
KF + + G L+C + + W L GDR + G L
Sbjct: 20 IKFTEGLRNEEATEGATAVLRCELSKMAP--VEWWKGHETLRDGDRHSLRQDGARCELQ- 76
Query: 59 DVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQD 105
I + ED+G Y C G + SA + V P P
Sbjct: 77 -------IRGLVAEDAGEYLCMC----GKERTSAMLTVRAMPSGPSS 112
Score = 59.3 bits (144), Expect = 2e-11
Identities = 24/115 (20%), Positives = 39/115 (33%), Gaps = 14/115 (12%)
Query: 86 GSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNG 145
S SA + V P + T R+ + G A ++C ++ P + W K
Sbjct: 5 SSGRTSAMLTVRALP--IK----FTEGLRNEEATEGATAVLRCELS-KMAP--VEWWKGH 55
Query: 146 LPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNE 200
+ ++R G L I L +G Y C+ S+ L V
Sbjct: 56 ETLRDGDRHSLRQDGA-RCELQIRGLVAEDAGEYLCMCGKERT----SAMLTVRA 105
>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding
protein C, immunoglobulin domain, structural genomics,
NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A
Length = 100
Score = 58.9 bits (143), Expect = 1e-11
Identities = 19/86 (22%), Positives = 27/86 (31%), Gaps = 7/86 (8%)
Query: 115 SIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTG 174
+ +V G R + DP L + W KNG I + G L I
Sbjct: 17 AYQVDKGGRVRFVVEL--ADPKLEVKWYKNGQEIRPSTKYIFEHKGC-QRILFINNCQMT 73
Query: 175 HSGNYTCVASNTVASDNHSSNLRVNE 200
Y A + + S+ L V
Sbjct: 74 DDSEYYVTAGD----EKCSTELFVRS 95
Score = 55.5 bits (134), Expect = 3e-10
Identities = 16/94 (17%), Positives = 31/94 (32%), Gaps = 17/94 (18%)
Query: 11 QQTLQPGPPVSLKCIATGNPTPHISWKLDGYPL-AGDRFVM---GQYMSLHGDVISHVNI 66
+ G V +P + W +G + +++ G L I
Sbjct: 17 AYQVDKGGRVRFVVEL-ADPKLEVKWYKNGQEIRPSTKYIFEHKGCQRILF--------I 67
Query: 67 SSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAP 100
++ ++ D Y TA G + S ++ V P
Sbjct: 68 NNCQMTDDSEYYVTA----GDEKCSTELFVRSGP 97
>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG,
inhibitory receptor, disulfide, immune system; 1.70A
{Homo sapiens}
Length = 196
Score = 61.4 bits (149), Expect = 2e-11
Identities = 33/182 (18%), Positives = 61/182 (33%), Gaps = 21/182 (11%)
Query: 13 TLQPGP------PVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNI 66
+PG V++ C T + P DR L + +I
Sbjct: 9 WAEPGSVISWGNSVTIWCQGT-LEAREYRLDKEESPAPWDR-----QNPLEPKNKARFSI 62
Query: 67 SSVRVEDSGIYQCTATNRVGSQTHSA--DMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRA 124
S+ + +G Y+C + VG S ++ + A +P S S V SG
Sbjct: 63 PSMTEDYAGRYRCYYRSPVGWSQPSDPLELVMTGAYSKPT-----LSALPSPLVTSGKSV 117
Query: 125 GVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVAS 184
+ C P T K + + ++ + ++ +++ H G Y C +S
Sbjct: 118 TLLC--QSRSPMDTFLLCKERAAHPLLCLRSEHGAQQHQAEFPMSPVTSVHGGTYRCFSS 175
Query: 185 NT 186
+
Sbjct: 176 HG 177
Score = 30.2 bits (68), Expect = 0.54
Identities = 15/86 (17%), Positives = 28/86 (32%), Gaps = 7/86 (8%)
Query: 202 TSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNV-----PPHIGPFTFGELMEGVR 256
+ SI +++ ++G Y C + V S L + + P + + G
Sbjct: 57 KARFSIPSMTEDYAGRYRCYYRSPVGWSQPSDPLELVMTGAYSKPTLSALPSPLVTSGKS 116
Query: 257 TQVACVVQSGDLPLSLQWYKNGLAIS 282
+ C QS + K A
Sbjct: 117 VTLLC--QSRSPMDTFLLCKERAAHP 140
Score = 28.6 bits (64), Expect = 2.0
Identities = 14/83 (16%), Positives = 24/83 (28%), Gaps = 8/83 (9%)
Query: 12 QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVN--ISSV 69
+ G V+L C + +P + S HG +S V
Sbjct: 109 PLVTSGKSVTLLC-QSRSPMDTFLLCKERAAHPLLCLR-----SEHGAQQHQAEFPMSPV 162
Query: 70 RVEDSGIYQCTATNRVGSQTHSA 92
G Y+C +++ S
Sbjct: 163 TSVHGGTYRCFSSHGFSHYLLSH 185
Score = 27.5 bits (61), Expect = 3.9
Identities = 15/83 (18%), Positives = 30/83 (36%), Gaps = 6/83 (7%)
Query: 118 VHSGDRAGVQCLVTKGDPPLTISWL-KNGLPILSDAEITIRSSGEYTSSLSIATLSTGHS 176
+ G+ + C +G L K P D + + + + SI +++ ++
Sbjct: 16 ISWGNSVTIWC---QGTLEAREYRLDKEESPAPWDRQNPL--EPKNKARFSIPSMTEDYA 70
Query: 177 GNYTCVASNTVASDNHSSNLRVN 199
G Y C + V S L +
Sbjct: 71 GRYRCYYRSPVGWSQPSDPLELV 93
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 63.2 bits (154), Expect = 2e-11
Identities = 24/100 (24%), Positives = 37/100 (37%), Gaps = 5/100 (5%)
Query: 1 SHPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDV 60
S P ++ + G LKC P + W L + + L+
Sbjct: 351 SAPFIMDAPRDLNISEGRMAELKCRTP--PMSSVKWLLPNGTVLSHASRHPRISVLNDGT 408
Query: 61 ISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAP 100
+ N S V + D+G+Y C TN G+ SA + V A
Sbjct: 409 L---NFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVSTAG 445
Score = 59.4 bits (144), Expect = 3e-10
Identities = 22/96 (22%), Positives = 42/96 (43%), Gaps = 3/96 (3%)
Query: 109 VTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSI 168
+ R + + G A ++C + P ++ WL +LS A R S +L+
Sbjct: 355 IMDAPRDLNISEGRMAELKC---RTPPMSSVKWLLPNGTVLSHASRHPRISVLNDGTLNF 411
Query: 169 ATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSS 204
+ + +G YTC+ +N + N S+ L V+ +
Sbjct: 412 SHVLLSDTGVYTCMVTNVAGNSNASAYLNVSTAGTH 447
Score = 43.6 bits (103), Expect = 4e-05
Identities = 12/56 (21%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 191 NHSSNLRVNEYTS-SLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGP 245
+ S + R++ +L+ + + +G YTC+ +N + N S+ L V+
Sbjct: 394 HASRHPRISVLNDGTLNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVSTAGTHHH 449
>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3;
structural genomics, joint center for struct genomics,
JCSG; HET: MLY MSE; 1.70A {Mus musculus}
Length = 112
Score = 58.9 bits (142), Expect = 2e-11
Identities = 21/101 (20%), Positives = 34/101 (33%), Gaps = 7/101 (6%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIATGNPTP--HISWKLDGYPLAGDRFVMGQYMSLHGDV 60
PQ+ + Q+ G VS C A + +W D L ++ G
Sbjct: 11 PQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGE 70
Query: 61 ISHVN----ISSVRVEDSGIYQCTATNRVGSQT-HSADMRV 96
+ + +V G YQC +N GS A + +
Sbjct: 71 LMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXLTI 111
Score = 47.8 bits (113), Expect = 2e-07
Identities = 20/100 (20%), Positives = 31/100 (31%), Gaps = 9/100 (9%)
Query: 109 VTSNSRSIKVHSGDRAGVQCLVT-KGDPPLTISWLKNGLPILSDAEITI-------RSSG 160
+T + G C D P+T +W + +
Sbjct: 13 ITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGELM 72
Query: 161 EYTSSLSIATLSTGHSGNYTCVASNTVASDN-HSSNLRVN 199
EYT+ L + + G Y CV SN S + L +N
Sbjct: 73 EYTTILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXLTIN 112
>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2edl_A
2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A
Length = 108
Score = 58.5 bits (142), Expect = 2e-11
Identities = 17/87 (19%), Positives = 32/87 (36%), Gaps = 8/87 (9%)
Query: 114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLST 173
++ + G A +QC ++ + W K + +++ G L I LS
Sbjct: 16 KTKEASEGATATLQCELS---KVAPVEWKKGPETLRDGGRYSLKQDGT-RCELQIHDLSV 71
Query: 174 GHSGNYTCVASNTVASDNHSSNLRVNE 200
+G Y+C+ S+ L V
Sbjct: 72 ADAGEYSCMCGQERT----SATLTVRA 94
Score = 54.3 bits (131), Expect = 8e-10
Identities = 23/101 (22%), Positives = 35/101 (34%), Gaps = 22/101 (21%)
Query: 8 KFIQ----QTLQPGPPVSLKCIATGNPTPHISWKLDGYPL-AGDRFVM---GQYMSLHGD 59
+F Q + G +L+C + + WK L G R+ + G L
Sbjct: 10 RFTQDLKTKEASEGATATLQCEL--SKVAPVEWKKGPETLRDGGRYSLKQDGTRCELQ-- 65
Query: 60 VISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAP 100
I + V D+G Y C G + SA + V P
Sbjct: 66 ------IHDLSVADAGEYSCMC----GQERTSATLTVRALP 96
>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 113
Score = 58.6 bits (142), Expect = 3e-11
Identities = 16/91 (17%), Positives = 31/91 (34%), Gaps = 7/91 (7%)
Query: 110 TSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIA 169
S + +R + C + P + W K+G ++ + ++ L +
Sbjct: 17 PSGKVYVAAVRLERVVLTCEL--CRPWAEVRWTKDGEEVVESPALLLQKEDT-VRRLVLP 73
Query: 170 TLSTGHSGNYTCVASNTVASDNHSSNLRVNE 200
+ SG Y C + A S + V E
Sbjct: 74 AVQLEDSGEYLCEIDDESA----SFTVTVTE 100
Score = 53.6 bits (129), Expect = 2e-09
Identities = 21/108 (19%), Positives = 36/108 (33%), Gaps = 22/108 (20%)
Query: 12 QTLQPGPPVSLKCIATGNPTPHISWKLDGYPL-AGDRFVM---GQYMSLHGDVISHVNIS 67
V L C P + W DG + ++ L +
Sbjct: 23 VAAVRLERVVLTCEL-CRPWAEVRWTKDGEEVVESPALLLQKEDTVRRLV--------LP 73
Query: 68 SVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRS 115
+V++EDSG Y C ++ S + V + P V+++ S S
Sbjct: 74 AVQLEDSGEYLCEI----DDESASFTVTVTEPP-----VRIIYSGPSS 112
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33;
2.40A {Caenorhabditis elegans} PDB: 1koa_A
Length = 573
Score = 62.5 bits (152), Expect = 3e-11
Identities = 20/95 (21%), Positives = 35/95 (36%), Gaps = 4/95 (4%)
Query: 2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVI 61
P+ I K + G + C + P ++W D L +YM +
Sbjct: 482 QPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSV----KYMKRYNGND 537
Query: 62 SHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRV 96
+ I+ V+ +D G Y A N G++ + V
Sbjct: 538 YGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNV 572
Score = 59.1 bits (143), Expect = 5e-10
Identities = 21/124 (16%), Positives = 37/124 (29%), Gaps = 8/124 (6%)
Query: 81 ATNRVGSQTHSADMRVYDAPGQPQDVKL------VTSNSRSIKVHSGDRAGVQCLVTKGD 134
R+ + + R + + +V G A C V
Sbjct: 451 PLGRISNYSSLRKHRPQEYSIRDAFWDRSEAQPRFIVKPYGTEVGEGQSANFYCRVI-AS 509
Query: 135 PPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSS 194
P ++W K+ + + R +G L+I + G YT A N+ +
Sbjct: 510 SPPVVTWHKDDRELKQSVKYMKRYNGN-DYGLTINRVKGDDKGEYTVRAKNSYGTKEEIV 568
Query: 195 NLRV 198
L V
Sbjct: 569 FLNV 572
>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A*
1ow0_C*
Length = 218
Score = 60.7 bits (147), Expect = 3e-11
Identities = 28/172 (16%), Positives = 51/172 (29%), Gaps = 15/172 (8%)
Query: 16 PGPPVSLKCIAT-GNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDS 74
V ++C A + + R + + V I + +
Sbjct: 22 LDGSVKIQCQAIREAYLTQLMIIKNSTYREIGR----RLKFWNETDPEFV-IDHMDANKA 76
Query: 75 GIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGD 134
G YQC +S + + K S R + + G+ + C +
Sbjct: 77 GRYQCQYRIGHYRFRYSDTLELV---VTGLYGKPFLSADRGLVLMPGENISLTCS-SAHI 132
Query: 135 PPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNT 186
P S K G + + SGE+ ++ S+ + SG Y C
Sbjct: 133 PFDRFSLAKEG-----ELSLPQHQSGEHPANFSLGPVDLNVSGIYRCYGWYN 179
Score = 38.3 bits (89), Expect = 0.001
Identities = 11/81 (13%), Positives = 22/81 (27%), Gaps = 2/81 (2%)
Query: 118 VHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSG 177
+ +QC + + +KN + + E I + +G
Sbjct: 20 IPLDGSVKIQCQAIREAYLTQLMIIKNSTYREIGRRL--KFWNETDPEFVIDHMDANKAG 77
Query: 178 NYTCVASNTVASDNHSSNLRV 198
Y C +S L +
Sbjct: 78 RYQCQYRIGHYRFRYSDTLEL 98
Score = 33.7 bits (77), Expect = 0.049
Identities = 17/81 (20%), Positives = 27/81 (33%), Gaps = 8/81 (9%)
Query: 12 QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRV 71
L PG +SL C + P S +G G+ ++ ++ V +
Sbjct: 115 LVLMPGENISLTCSSAHIPFDRFSLAKEGEL--------SLPQHQSGEHPANFSLGPVDL 166
Query: 72 EDSGIYQCTATNRVGSQTHSA 92
SGIY+C S
Sbjct: 167 NVSGIYRCYGWYNRSPYLWSF 187
Score = 33.3 bits (76), Expect = 0.060
Identities = 18/93 (19%), Positives = 25/93 (26%), Gaps = 8/93 (8%)
Query: 192 HSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNV-----PPHIGPF 246
NE I + +G Y C +S L + V P +
Sbjct: 53 GRRLKFWNETDPEFVIDHMDANKAGRYQCQYRIGHYRFRYSDTLELVVTGLYGKPFLSAD 112
Query: 247 TFGELMEGVRTQVACVVQSGDLPLS-LQWYKNG 278
LM G + C S +P K G
Sbjct: 113 RGLVLMPGENISLTC--SSAHIPFDRFSLAKEG 143
>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C,
C-protein, skeletal muscle fast- isoform, MYBPCF,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 101
Score = 57.0 bits (138), Expect = 8e-11
Identities = 17/91 (18%), Positives = 33/91 (36%), Gaps = 11/91 (12%)
Query: 114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSD----AEITIRSSGEYTSSLSIA 169
+V GDR + V+ + + W+KNG+ + + A + G+ L +
Sbjct: 16 EDQQVFVGDRVEMAVEVS--EEGAQVMWMKNGVELTREDSFKARYRFKKDGK-RHILIFS 72
Query: 170 TLSTGHSGNYTCVASNTVASDNHSSNLRVNE 200
+ G Y + + + L V E
Sbjct: 73 DVVQEDRGRYQVITNGGQC----EAELIVEE 99
Score = 56.2 bits (136), Expect = 1e-10
Identities = 14/84 (16%), Positives = 23/84 (27%), Gaps = 5/84 (5%)
Query: 8 KFIQ----QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISH 63
+ Q + G V + + + W +G L + +Y
Sbjct: 10 LIVTPLEDQQVFVGDRVEMAVEVS-EEGAQVMWMKNGVELTREDSFKARYRFKKDGKRHI 68
Query: 64 VNISSVRVEDSGIYQCTATNRVGS 87
+ S V ED G YQ
Sbjct: 69 LIFSDVVQEDRGRYQVITNGGQCE 92
>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural
cytotoxicity receptor, NK cell receptor, immunoglobulin
fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4
Length = 242
Score = 59.9 bits (145), Expect = 8e-11
Identities = 35/216 (16%), Positives = 59/216 (27%), Gaps = 23/216 (10%)
Query: 12 QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRV 71
+ V++ C +G A DR + ++ I +
Sbjct: 16 FMVPKEKQVTICCQGN-YGAVEYQLHFEGSLFAVDRPKPPERINKV-----KFYIPDMNS 69
Query: 72 EDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVT 131
+G Y C S + + S +V SG++ C
Sbjct: 70 RMAGQYSCIYRVGELWSEPSNLLDLVVTEMYD---TPTLSVHPGPEVISGEKVTFYC--R 124
Query: 132 KGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDN 191
LK G + R G+ + + ++T H G Y C S + +
Sbjct: 125 LDTATSMFLLLKEG-----RSSHVQRGYGKVQAEFPLGPVTTAHRGTYRCFGSYNNHAWS 179
Query: 192 HSSN---LRVNEYTSSLSIA----TLSTGHSGNYTC 220
S L V + S+A T G Y
Sbjct: 180 FPSEPVKLLVTGDIENTSLAPEDPTFPADTWGTYLL 215
Score = 28.7 bits (64), Expect = 2.2
Identities = 7/44 (15%), Positives = 15/44 (34%)
Query: 202 TSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGP 245
I +++ +G Y+C+ S+ L + V
Sbjct: 59 KVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDT 102
>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus
receptor, cell adhesion, integrin ligand, glycopr LFA-1
ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo
sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A
1d3e_I 1d3i_I 3tcx_A
Length = 185
Score = 59.0 bits (142), Expect = 8e-11
Identities = 27/182 (14%), Positives = 56/182 (30%), Gaps = 23/182 (12%)
Query: 11 QQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVR 70
+ L G V + C + + + + PL ++ ++
Sbjct: 8 KVILPRGGSVLVTCSTSCDQPKLLGIE---TPLPKKELLLPGNNRKVYEL--------SN 56
Query: 71 VEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLV 130
V++ C + G T + VY P+ V+L S G + ++C V
Sbjct: 57 VQEDSQPMCYSNCPDGQSTAKTFLTVYWT---PERVELAPLPSW---QPVGKQLTLRCQV 110
Query: 131 TKGDPP--LTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVA 188
G P LT+ L+ + + + + T + H ++C +
Sbjct: 111 EGGAPRAQLTVVLLRGEKELKREPAVGEPAEVTTTVLVR----RDHHGAQFSCRTELDLR 166
Query: 189 SD 190
Sbjct: 167 PQ 168
Score = 30.5 bits (68), Expect = 0.39
Identities = 15/127 (11%), Positives = 30/127 (23%), Gaps = 15/127 (11%)
Query: 169 ATLSTGHSGNYTCVASNTVASDNHSSNLR--------VNEYTSSLSIATLSTGHSGNYTC 220
L G S TC S + + + + C
Sbjct: 9 VILPRGGSVLVTCSTS---CDQPKLLGIETPLPKKELLLPGNNRKVYELSNVQEDSQPMC 65
Query: 221 VASNTVASDNHSSNLRVNVPPHIGPFTFGE--LMEGVRTQVACVVQSG--DLPLSLQWYK 276
++ + L V P G + + C V+ G L++ +
Sbjct: 66 YSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLR 125
Query: 277 NGLAISQ 283
+ +
Sbjct: 126 GEKELKR 132
>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 103
Score = 56.6 bits (137), Expect = 1e-10
Identities = 17/76 (22%), Positives = 28/76 (36%), Gaps = 3/76 (3%)
Query: 114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLST 173
+++V A C P T++W K L + + + G T L+I+ L
Sbjct: 16 TNLQVEEKGTAVFTCKTE--HPAATVTWRKGLLELRASGKHQPSQEGL-TLRLTISALEK 72
Query: 174 GHSGNYTCVASNTVAS 189
S YTC +
Sbjct: 73 ADSDTYTCDIGQAQSR 88
Score = 56.2 bits (136), Expect = 2e-10
Identities = 19/105 (18%), Positives = 31/105 (29%), Gaps = 21/105 (20%)
Query: 8 KFIQ----QTLQPGPPVSLKCIATGNPTPHISWKLDGYPL-AGDRFVM---GQYMSLHGD 59
F + ++ C T +P ++W+ L A + G + L
Sbjct: 10 CFTEELTNLQVEEKGTAVFTCK-TEHPAATVTWRKGLLELRASGKHQPSQEGLTLRLT-- 66
Query: 60 VISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQ 104
IS++ DS Y C G A + V P
Sbjct: 67 ------ISALEKADSDTYTCDI----GQAQSRAQLLVQGRRSGPS 101
>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW-
type/skeletal muscle SLOW-isoform, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Length = 103
Score = 54.6 bits (132), Expect = 6e-10
Identities = 18/89 (20%), Positives = 36/89 (40%), Gaps = 9/89 (10%)
Query: 114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILS--DAEITIRSSGEYTSSLSIATL 171
+ G+R ++C V+ + + W KNG I+ + IR G+ L I
Sbjct: 15 EDTTAYCGERVELECEVS--EDDANVKWFKNGEEIIPGPKSRYRIRVEGK-KHILIIEGA 71
Query: 172 STGHSGNYTCVASNTVASDNHSSNLRVNE 200
+ + Y+ + + + S+ L V+
Sbjct: 72 TKADAAEYSVMTTGGQS----SAKLSVDL 96
Score = 50.4 bits (121), Expect = 2e-08
Identities = 15/90 (16%), Positives = 26/90 (28%), Gaps = 19/90 (21%)
Query: 8 KFIQ----QTLQPGPPVSLKCIATGNPTPHISWKLDGYPL---AGDRFVM---GQYMSLH 57
+ T G V L+C + ++ W +G + R+ + G+ L
Sbjct: 9 MVTKQLEDTTAYCGERVELECEVS-EDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILI 67
Query: 58 GDVISHVNISSVRVEDSGIYQCTATNRVGS 87
I D+ Y T S
Sbjct: 68 --------IEGATKADAAEYSVMTTGGQSS 89
>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor,
two-domain structure, V-SET, C2-SET, IG-like domain,
6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens}
PDB: 2zg3_A* 2zg2_A
Length = 214
Score = 56.8 bits (136), Expect = 7e-10
Identities = 39/183 (21%), Positives = 61/183 (33%), Gaps = 32/183 (17%)
Query: 25 IATGNPTPHISWKLDG-YPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATN 83
+AT NP + + G + L GD V + SL I R+ED+G Y
Sbjct: 54 VATNNPDRRVKPETQGRFRLLGD--VQKKNCSLS--------IGDARMEDTGSYFFRVER 103
Query: 84 RVGSQ----THSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVT---KGDPP 136
+ + ++ V +P + SG + C + + PP
Sbjct: 104 GRDVKYSYQQNKLNLEVTALIEKP-------DIHFLEPLESGRPTRLSCSLPGSCEAGPP 156
Query: 137 LTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNL 196
LT SW N L L +S L++ H N TC A +
Sbjct: 157 LTFSWTGNALSPLD-------PETTRSSELTLTPRPEDHGTNLTCQMKRQGAQVTTERTV 209
Query: 197 RVN 199
++N
Sbjct: 210 QLN 212
Score = 39.0 bits (90), Expect = 8e-04
Identities = 11/91 (12%), Positives = 22/91 (24%), Gaps = 14/91 (15%)
Query: 10 IQQTLQPGPPVSLKCIAT----GNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVN 65
+ L+ G P L C P SW + S +
Sbjct: 131 FLEPLESGRPTRLSCSLPGSCEAGPPLTFSWTGNALSPLDPETT----------RSSELT 180
Query: 66 ISSVRVEDSGIYQCTATNRVGSQTHSADMRV 96
++ + C + T +++
Sbjct: 181 LTPRPEDHGTNLTCQMKRQGAQVTTERTVQL 211
>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor,
immune system, IG domain, cytotoxicity, C2-type IG-like
domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 188
Score = 56.0 bits (135), Expect = 9e-10
Identities = 30/177 (16%), Positives = 50/177 (28%), Gaps = 20/177 (11%)
Query: 12 QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRV 71
+ V++ C +G A DR + ++ I +
Sbjct: 13 FMVPKEKQVTICCQGN-YGAVEYQLHFEGSLFAVDRPKPPERIN-----KVKFYIPDMNS 66
Query: 72 EDSGIYQCTATNRVGSQTHSA--DMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCL 129
+G Y C S D+ V + P S +V SG++ C
Sbjct: 67 RMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPT-----LSVHPGPEVISGEKVTFYC- 120
Query: 130 VTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNT 186
LK G + R G+ + + ++T H G Y C S
Sbjct: 121 -RLDTATSMFLLLKEG-----RSSHVQRGYGKVQAEFPLGPVTTAHRGTYRCFGSYN 171
Score = 30.9 bits (70), Expect = 0.33
Identities = 12/82 (14%), Positives = 24/82 (29%), Gaps = 6/82 (7%)
Query: 118 VHSGDRAGVQCLVTKGDPPLTISWL-KNGLPILSDAEITIRSSGEYTSSLSIATLSTGHS 176
V + + C +G+ L G D I +++ +
Sbjct: 15 VPKEKQVTICC---QGNYGAVEYQLHFEGSLFAVDRPK--PPERINKVKFYIPDMNSRMA 69
Query: 177 GNYTCVASNTVASDNHSSNLRV 198
G Y+C+ S+ L +
Sbjct: 70 GQYSCIYRVGELWSEPSNLLDL 91
Score = 29.4 bits (66), Expect = 0.91
Identities = 13/88 (14%), Positives = 27/88 (30%), Gaps = 7/88 (7%)
Query: 202 TSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNV-----PPHIGPFTFGELMEGVR 256
I +++ +G Y+C+ S+ L + V P + E++ G +
Sbjct: 56 KVKFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGEK 115
Query: 257 TQVACVVQSGDLPLSLQWYKNGLAISQP 284
C + K G +
Sbjct: 116 VTFYC--RLDTATSMFLLLKEGRSSHVQ 141
>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform
1; immunoglobulin-like fold, immune system; 1.85A {Homo
sapiens}
Length = 196
Score = 55.3 bits (133), Expect = 2e-09
Identities = 32/178 (17%), Positives = 57/178 (32%), Gaps = 16/178 (8%)
Query: 12 QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRV 71
+ G V+++C T +G P D L + +I S+
Sbjct: 14 SVISRGNSVTIRCQGT-LEAQEYRLVKEGSPEPWDT-----QNPLEPKNKARFSIPSMTE 67
Query: 72 EDSGIYQCTATNRVGSQTHS--ADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCL 129
+G Y+C + G S ++ V +P S S V SG+ +QC
Sbjct: 68 HHAGRYRCYYYSPAGWSEPSDPLELVVTGFYNKPT-----LSALPSPVVTSGENVTLQCG 122
Query: 130 VTKGDPPLTISWLKNGLPILSD-AEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNT 186
+ G LS + + SG++ + + ++ H C S
Sbjct: 123 S--RLRFDRFILTEEGDHKLSWTLDSQLTPSGQFQALFPVGPVTPSHRWMLRCYGSRR 178
Score = 29.8 bits (67), Expect = 0.70
Identities = 12/81 (14%), Positives = 26/81 (32%), Gaps = 3/81 (3%)
Query: 12 QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRV 71
+ G V+L+C G+ + L + + ++ G + + V
Sbjct: 109 PVVTSGENVTLQC---GSRLRFDRFILTEEGDHKLSWTLDSQLTPSGQFQALFPVGPVTP 165
Query: 72 EDSGIYQCTATNRVGSQTHSA 92
+ +C + R Q S
Sbjct: 166 SHRWMLRCYGSRRHILQVWSE 186
Score = 28.3 bits (63), Expect = 2.3
Identities = 16/83 (19%), Positives = 30/83 (36%), Gaps = 6/83 (7%)
Query: 118 VHSGDRAGVQCLVTKGDPPLTISWL-KNGLPILSDAEITIRSSGEYTSSLSIATLSTGHS 176
+ G+ ++C +G L K G P D + + + SI +++ H+
Sbjct: 16 ISRGNSVTIRC---QGTLEAQEYRLVKEGSPEPWDTQN--PLEPKNKARFSIPSMTEHHA 70
Query: 177 GNYTCVASNTVASDNHSSNLRVN 199
G Y C + S L +
Sbjct: 71 GRYRCYYYSPAGWSEPSDPLELV 93
Score = 27.5 bits (61), Expect = 4.2
Identities = 14/82 (17%), Positives = 25/82 (30%), Gaps = 7/82 (8%)
Query: 202 TSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNV-----PPHIGPFTFGELMEGVR 256
+ SI +++ H+G Y C + S L + V P + + G
Sbjct: 57 KARFSIPSMTEHHAGRYRCYYYSPAGWSEPSDPLELVVTGFYNKPTLSALPSPVVTSGEN 116
Query: 257 TQVACVVQSGDLPLSLQWYKNG 278
+ C S + G
Sbjct: 117 VTLQC--GSRLRFDRFILTEEG 136
>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A
{Homo sapiens}
Length = 184
Score = 54.8 bits (132), Expect = 3e-09
Identities = 30/177 (16%), Positives = 54/177 (30%), Gaps = 29/177 (16%)
Query: 12 QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRV 71
+ PV+L+C + D+ + + I +++
Sbjct: 17 SLVPLEKPVTLRCQGPP-GVDLYRLEKLSSSRYQDQ--------------AVLFIPAMKR 61
Query: 72 EDSGIYQCTATNRVGSQTHSA--DMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCL 129
+G Y+C+ N S ++ +P S V SG +QC
Sbjct: 62 SLAGRYRCSYQNGSLWSLPSDQLELVATGVFAKP-----SLSAQPGPAVSSGGDVTLQC- 115
Query: 130 VTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNT 186
+ K G D Y +S I T++ HSG Y C + ++
Sbjct: 116 -QTRYGFDQFALYKEG-----DPAPYKNPERWYRASFPIITVTAAHSGTYRCYSFSS 166
Score = 31.3 bits (71), Expect = 0.23
Identities = 15/87 (17%), Positives = 23/87 (26%), Gaps = 7/87 (8%)
Query: 202 TSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNV-----PPHIGPFTFGELMEGVR 256
+ L I + +G Y C N S L + P + + G
Sbjct: 51 QAVLFIPAMKRSLAGRYRCSYQNGSLWSLPSDQLELVATGVFAKPSLSAQPGPAVSSGGD 110
Query: 257 TQVACVVQSGDLPLSLQWYKNGLAISQ 283
+ C Q+ YK G
Sbjct: 111 VTLQC--QTRYGFDQFALYKEGDPAPY 135
>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like
folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A
2dyp_D 2otp_A 3q2c_A
Length = 198
Score = 54.5 bits (131), Expect = 4e-09
Identities = 31/176 (17%), Positives = 54/176 (30%), Gaps = 11/176 (6%)
Query: 12 QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRV 71
+ G PV+L+C T + + + + I S+
Sbjct: 14 SVITQGSPVTLRCQGG-QETQEYRLYREKKTAPWITRIPQELVK-----KGQFPIPSITW 67
Query: 72 EDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVT 131
E +G Y+C + ++ S+D G L S S V+SG +QC
Sbjct: 68 EHTGRYRCYYGSDTAGRSESSDPLELVVTGAYIKPTL--SAQPSPVVNSGGNVTLQC--D 123
Query: 132 KGDPPLTISWLKNGLPILSDAEITIR-SSGEYTSSLSIATLSTGHSGNYTCVASNT 186
K G + + G + S+ +S Y C A ++
Sbjct: 124 SQVAFDGFILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCYAYDS 179
Score = 30.6 bits (69), Expect = 0.48
Identities = 11/81 (13%), Positives = 22/81 (27%), Gaps = 3/81 (3%)
Query: 12 QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRV 71
+ G V+L+C + +G + G + ++ V
Sbjct: 110 PVVNSGGNVTLQC-DSQVAFDGFILCKEGEDEHPQC--LNSQPHARGSSRAIFSVGPVSP 166
Query: 72 EDSGIYQCTATNRVGSQTHSA 92
Y+C A + S
Sbjct: 167 SRRWWYRCYAYDSNSPYEWSL 187
Score = 28.7 bits (64), Expect = 1.7
Identities = 18/100 (18%), Positives = 31/100 (31%), Gaps = 6/100 (6%)
Query: 118 VHSGDRAGVQCLVTKGDPPLTISWL-KNGLPILSDAEITIRSSGEYTSSLSIATLSTGHS 176
+ G ++C +G L + I I +++ H+
Sbjct: 16 ITQGSPVTLRC---QGGQETQEYRLYREKKTAPWITRI--PQELVKKGQFPIPSITWEHT 70
Query: 177 GNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSG 216
G Y C + A + SS+ T + TLS S
Sbjct: 71 GRYRCYYGSDTAGRSESSDPLELVVTGAYIKPTLSAQPSP 110
Score = 28.3 bits (63), Expect = 2.4
Identities = 14/83 (16%), Positives = 25/83 (30%), Gaps = 8/83 (9%)
Query: 202 TSSLSIATLSTGHSGNYTCVASNTVASDNHSSN------LRVNVPPHIGPFTFGELMEGV 255
I +++ H+G Y C + A + SS+ + P + + G
Sbjct: 57 KGQFPIPSITWEHTGRYRCYYGSDTAGRSESSDPLELVVTGAYIKPTLSAQPSPVVNSGG 116
Query: 256 RTQVACVVQSGDLPLSLQWYKNG 278
+ C S K G
Sbjct: 117 NVTLQC--DSQVAFDGFILCKEG 137
>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein,
immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG;
2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB:
1p9m_C 2arw_A
Length = 325
Score = 53.7 bits (128), Expect = 2e-08
Identities = 24/115 (20%), Positives = 37/115 (32%), Gaps = 11/115 (9%)
Query: 3 PQLIYKFIQQTLQPGPPVSLKCIA-TGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVI 61
P T PG V+L C + W L G + S +
Sbjct: 7 PAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAA-------GSHPSRWAGMG 59
Query: 62 SHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSI 116
+ + SV++ DSG Y C G + + V P +PQ S ++
Sbjct: 60 RRLLLRSVQLHDSGNYSCYRA---GRPAGTVHLLVDVPPEEPQLSCFRKSPLSNV 111
Score = 51.4 bits (122), Expect = 1e-07
Identities = 17/113 (15%), Positives = 33/113 (29%), Gaps = 9/113 (7%)
Query: 121 GDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYT 180
GD + C + + T+ W+ S L + ++ SGNY+
Sbjct: 21 GDSVTLTCPGVEPEDNATVHWVLRKPAAGSHP----SRWAGMGRRLLLRSVQLHDSGNYS 76
Query: 181 CVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSS 233
C + + +L V+ ++ N C S +
Sbjct: 77 CYRAG---RPAGTVHLLVDVPPEEPQLSCFRKSPLSNVVC--EWGPRSTPSLT 124
>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold,
natural killer cell receptor, immune SY; HET: NAG; 1.80A
{Homo sapiens} PDB: 1im9_D
Length = 316
Score = 53.0 bits (127), Expect = 3e-08
Identities = 29/180 (16%), Positives = 55/180 (30%), Gaps = 18/180 (10%)
Query: 12 QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRV 71
++ G V L+C + H +G R V G ++ +I + +
Sbjct: 128 PLVKSGERVILQCWSDIMFE-HFFLHKEGISKDPSRLVG---QIHDGVSKANFSIGPMML 183
Query: 72 EDSGIYQCTATNRVGSQTHSA-----DMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGV 126
+G Y+C + SA D+ V +P S KV +G+ +
Sbjct: 184 ALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTGPYEKP-----SLSAQPGPKVQAGESVTL 238
Query: 127 QCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNT 186
C + + G + + + + + + H G Y C S
Sbjct: 239 SC--SSRSSYDMYHLSREGGAHERRLPAVRKVNRTFQADFPLGPAT--HGGTYRCFGSFR 294
Score = 49.1 bits (117), Expect = 5e-07
Identities = 26/126 (20%), Positives = 41/126 (32%), Gaps = 6/126 (4%)
Query: 66 ISSVRVEDSGIYQCTATNRVGSQTHSA--DMRVYDAPGQPQDVKLVTSNSRSIKVHSGDR 123
+S V +G Y C ++ SA + V G + L+ V SG+R
Sbjct: 78 MSPVTTAHAGNYTCRGSHPHSPTGWSAPSNPVVIMVTGNHRKPSLLAHPGPL--VKSGER 135
Query: 124 AGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVA 183
+QC K G+ + G ++ SI + +G Y C
Sbjct: 136 VILQCWSDIM--FEHFFLHKEGISKDPSRLVGQIHDGVSKANFSIGPMMLALAGTYRCYG 193
Query: 184 SNTVAS 189
S T
Sbjct: 194 SVTHTP 199
Score = 29.5 bits (66), Expect = 1.1
Identities = 16/76 (21%), Positives = 27/76 (35%), Gaps = 7/76 (9%)
Query: 118 VHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSG 177
V G ++C K I I + S +++ ++T H+G
Sbjct: 35 VPRGGHVTLRCHYRHRFN--NFMLYKED-----RIHIPIFHGRIFQESFNMSPVTTAHAG 87
Query: 178 NYTCVASNTVASDNHS 193
NYTC S+ + S
Sbjct: 88 NYTCRGSHPHSPTGWS 103
Score = 29.1 bits (65), Expect = 1.7
Identities = 11/81 (13%), Positives = 21/81 (25%), Gaps = 6/81 (7%)
Query: 12 QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRV 71
+Q G V+L C + + + + G + +
Sbjct: 228 PKVQAGESVTLSCSSRSSYDMYHLSR------EGGAHERRLPAVRKVNRTFQADFPLGPA 281
Query: 72 EDSGIYQCTATNRVGSQTHSA 92
G Y+C + R S
Sbjct: 282 THGGTYRCFGSFRHSPYEWSD 302
Score = 28.3 bits (63), Expect = 2.8
Identities = 19/95 (20%), Positives = 36/95 (37%), Gaps = 10/95 (10%)
Query: 192 HSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDN---HSSNLRVNV-----PPHI 243
H + S +++ ++T H+GNYTC S+ + S+ + + V P +
Sbjct: 63 HIPIFHGRIFQESFNMSPVTTAHAGNYTCRGSHPHSPTGWSAPSNPVVIMVTGNHRKPSL 122
Query: 244 GPFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNG 278
+ G R + C S + +K G
Sbjct: 123 LAHPGPLVKSGERVILQC--WSDIMFEHFFLHKEG 155
>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane,
disulfide bond, glycoprotein, immunoglobulin domain,
membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A
{Homo sapiens}
Length = 589
Score = 53.5 bits (128), Expect = 3e-08
Identities = 10/117 (8%), Positives = 38/117 (32%), Gaps = 16/117 (13%)
Query: 12 QTLQPGPPVSLKCI-------ATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHV 64
+Q + C+ +I WK + + + +++ ++ S V
Sbjct: 13 PVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQY------TIINRTASSV 66
Query: 65 NISSVRVEDSGIYQCT--ATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVH 119
+ + + C ++ + + P +P+++ + + + ++
Sbjct: 67 TFTDIA-SLNIQLTCNILTFGQLEQNVYGITIISGLPPEKPKNLSCIVNEGKKMRCE 122
Score = 39.6 bits (92), Expect = 0.001
Identities = 19/122 (15%), Positives = 31/122 (25%), Gaps = 12/122 (9%)
Query: 10 IQQTLQPGPPVSLKCIATGNPTPHISWK--LDGYP-------LAGDRFVMGQYMSLHGDV 60
I L P P +L CI W + + +
Sbjct: 97 IISGLPPEKPKNLSCIVNEGKKMRCEWDGGRETHLETNFTLKSEWATHKFADCKAKRDTP 156
Query: 61 ISHVNISSVRVEDSGIYQCTATNRVG---SQTHSADMRVYDAPGQPQDVKLVTSNSRSIK 117
S S + A N +G S + D P P ++ ++ S S
Sbjct: 157 TSCTVDYSTVYFVNIEVWVEAENALGKVTSDHINFDPVYKVKPNPPHNLSVINSEELSSI 216
Query: 118 VH 119
+
Sbjct: 217 LK 218
>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast
MYBP-C, C-protein, skeletal muscle fast isoform,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 49.8 bits (118), Expect = 4e-08
Identities = 26/112 (23%), Positives = 37/112 (33%), Gaps = 10/112 (8%)
Query: 99 APGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPL--TISWLK---NGLPILSDAE 153
+ G + + S+ V +G A V V + P TI W K L S A
Sbjct: 5 SSGAEEPTGVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGAR 64
Query: 154 ITIRSSGE-----YTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNE 200
+ + S YT L I + G G Y D+ N+ V
Sbjct: 65 FSFKESHNSASNVYTVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNIDVEA 116
Score = 39.4 bits (91), Expect = 2e-04
Identities = 16/93 (17%), Positives = 34/93 (36%), Gaps = 8/93 (8%)
Query: 12 QTLQPGPPVSLKCIATGNP---TPHISW----KLDGYPLAGDRFVMGQYMSLHGDVISH- 63
+++ G + G P I W L+ +G RF + + +V +
Sbjct: 22 VSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASNVYTVE 81
Query: 64 VNISSVRVEDSGIYQCTATNRVGSQTHSADMRV 96
++I V + D G Y+ + + ++ V
Sbjct: 82 LHIGKVVLGDRGYYRLEVKAKDTCDSCGFNIDV 114
>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody,
immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL
SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2
b.1.1.2 PDB: 2qej_A*
Length = 214
Score = 51.4 bits (123), Expect = 4e-08
Identities = 32/189 (16%), Positives = 61/189 (32%), Gaps = 27/189 (14%)
Query: 14 LQPGPPVSLKCIATGNPTPH---ISWKLDGYPLAG----DRFVMGQYMSLHGDVISHVNI 66
L G +L C TG +W A +R + G Y V S +
Sbjct: 16 LLLGSEANLTCTLTGLRDASGVTFTWTPSSGKSAVQGPPERDLCGCYS-----VSSVLPG 70
Query: 67 SSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGV 126
+ + CTA +A + +P+ V L+ S + + +
Sbjct: 71 CAEPWNHGKTFTCTAAYPESKTPLTATLSKSGNTFRPE-VHLLPPPSEELA--LNELVTL 127
Query: 127 QCLVTKGDPP-LTISWLKNGLPILSDAEIT-------IRSSGEY--TSSLSIATLSTGHS 176
CL P + + WL+ + + +T + + + TS L +
Sbjct: 128 TCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAVTSILRV-AAEDWKK 186
Query: 177 GN-YTCVAS 184
G+ ++C+
Sbjct: 187 GDTFSCMVG 195
>3o3u_N Maltose-binding periplasmic protein, advanced Gly END
product-specific receptor; RAGE, AGER, scavenger
receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3cjj_A
2l7u_A* 2e5e_A
Length = 581
Score = 51.9 bits (124), Expect = 9e-08
Identities = 40/171 (23%), Positives = 76/171 (44%), Gaps = 13/171 (7%)
Query: 11 QQTLQPGPPVSLKCI-ATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDV-----ISHV 64
T + G P+ LKC A P + WKL+ + + Q V +
Sbjct: 375 NITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEAWKVLSPQGGGPWDSVARVLPNGSL 434
Query: 65 NISSVRVEDSGIYQCTATNRVGSQTHS-ADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDR 123
+ +V ++D GI++C A NR G +T S +RVY PG+P+ + ++ + ++
Sbjct: 435 FLPAVGIQDEGIFRCQAMNRNGKETKSNYRVRVYQIPGKPE----IVDSASELTAGVPNK 490
Query: 124 AGVQCLVTKGDPPLTISWLKNGLPILSDAE-ITIRSSGEYTSSLSIATLST 173
G C+ P T+SW +G P++ + + ++++ + TL +
Sbjct: 491 VGT-CVSEGSYPAGTLSWHLDGKPLVPNEKGVSVKEQTRRHPETGLFTLQS 540
>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell,
HLA, major histocompatibility complex class I (MHC class
I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 257
Score = 50.7 bits (121), Expect = 1e-07
Identities = 33/234 (14%), Positives = 71/234 (30%), Gaps = 27/234 (11%)
Query: 12 QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRV 71
++ V L+C + H +G + + + S I +
Sbjct: 16 PLVKSEETVILQCWSDV-RFQHFLLHREGKFKDTLHLIGEHHDGVSKANFS---IGPMMQ 71
Query: 72 EDSGIYQCTATNRVGSQTHSA-----DMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGV 126
+ +G Y+C + SA D+ + +P S V +G+ +
Sbjct: 72 DLAGTYRCYGSVTHSPYQLSAPSDPLDIVITGLYEKP-----SLSAQPGPTVLAGESVTL 126
Query: 127 QCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNT 186
C + + G + +G + + + + H G Y C S
Sbjct: 127 SC--SSRSSYDMYHLSREGEAHERRFSAGPKVNGTFQADFPLGPAT--HGGTYRCFGSFR 182
Query: 187 VASDN--HSSN---LRVNEYTSSLSIA----TLSTGHSGNYTCVASNTVASDNH 231
+ +SS+ + V S+ + + TG+ + A + S+
Sbjct: 183 DSPYEWSNSSDPLLVSVTGNPSNSWPSPTEPSSETGNPRHLHAAAEQKLISEED 236
Score = 26.9 bits (59), Expect = 8.4
Identities = 15/100 (15%), Positives = 30/100 (30%), Gaps = 10/100 (10%)
Query: 189 SDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASD---NHSSNLRVNV-----P 240
+ + ++ SI + +G Y C S T + S L + +
Sbjct: 48 TLHLIGEHHDGVSKANFSIGPMMQDLAGTYRCYGSVTHSPYQLSAPSDPLDIVITGLYEK 107
Query: 241 PHIGPFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLA 280
P + ++ G ++C S + G A
Sbjct: 108 PSLSAQPGPTVLAGESVTLSC--SSRSSYDMYHLSREGEA 145
>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology,
X-RAY solution scattering, constrained modelling, immune
system; NMR {Homo sapiens}
Length = 523
Score = 51.4 bits (123), Expect = 2e-07
Identities = 58/288 (20%), Positives = 99/288 (34%), Gaps = 55/288 (19%)
Query: 15 QPGPPVSLKCIATG-NPTPH-ISWKLDGYPLAGDRFVMGQYMSLHGD----VISHVNISS 68
+L C+ + P ++WK DG P+ V S + S+++++
Sbjct: 127 LQANKATLVCLISDFYPGAVTVAWKADGSPVKA--GVETTKPSKQSNNKYAASSYLSLTP 184
Query: 69 VRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQC 128
+ + Y C T+ + + A + V + +S+S SG A + C
Sbjct: 185 EQWKSHRSYSCQVTHEGSTVEKTVAPTECSASTKGPSVFPLAPSSKST---SGGTAALGC 241
Query: 129 LVTKGDP-PLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTV 187
LV P P+T+SW L +SG +T A L + SG Y+
Sbjct: 242 LVKDYFPQPVTVSWNSGAL-----------TSGVHTFP---AVLQS--SGLYSL------ 279
Query: 188 ASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGPFT 247
SS + V SSL + Y C ++ ++ + P + F
Sbjct: 280 -----SSVVTVPS--SSLG--------TQTYICNVNHKPSNTKVDKRVEPLSLPSVFLFP 324
Query: 248 ---FGELMEGVRTQVACVVQ---SGDLPLSLQWYKNGLAISQPDISIT 289
LM +V CVV D + WY +G+ +
Sbjct: 325 PKPKDTLMISRTPEVTCVVVDVSHEDPQVKFNWYVDGVQVHNAKTKPR 372
Score = 46.0 bits (109), Expect = 7e-06
Identities = 29/133 (21%), Positives = 56/133 (42%), Gaps = 12/133 (9%)
Query: 62 SHVNISSVRVEDSGIYQCTATNRVGSQT---HSADMRVYDAPGQPQDVKLVTSNSRSIKV 118
+ + IS + ED Y C + N + + V P V L +S +
Sbjct: 70 ASLAISGLEAEDESDYYCASWNSSDNSYVFGTGTKVTVLGQPKANPTVTLFPPSSEEL-- 127
Query: 119 HSGDRAGVQCLVTKGDP-PLTISWLKNGLPILSDAEIT---IRSSGEYT--SSLSIATLS 172
++A + CL++ P +T++W +G P+ + E T +S+ +Y S LS+
Sbjct: 128 -QANKATLVCLISDFYPGAVTVAWKADGSPVKAGVETTKPSKQSNNKYAASSYLSLTPEQ 186
Query: 173 TGHSGNYTCVASN 185
+Y+C ++
Sbjct: 187 WKSHRSYSCQVTH 199
Score = 41.0 bits (96), Expect = 3e-04
Identities = 31/189 (16%), Positives = 64/189 (33%), Gaps = 25/189 (13%)
Query: 10 IQQTLQPGPPVSLKCIATG----NPTPHISWKLDGYPLAG------DRFVMGQYMSLHGD 59
+ TL + C+ +P +W +DG + ++ Y
Sbjct: 327 PKDTLMISRTPEVTCVVVDVSHEDPQVKFNWYVDGVQVHNAKTKPREQQYNSTYR----- 381
Query: 60 VISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVH 119
V+S + + D Y+C +N+ + + V + + +
Sbjct: 382 VVSVLTVLHQNWLDGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSREEM--- 438
Query: 120 SGDRAGVQCLVTKGDP-PLTISWLKNGLPILS--DAEITIRSSGEY--TSSLSIATLSTG 174
+ ++ + CLV P + + W NG P + + S G + S L++ S
Sbjct: 439 TKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTV-DKSRW 497
Query: 175 HSGN-YTCV 182
GN ++C
Sbjct: 498 QQGNVFSCS 506
Score = 31.0 bits (70), Expect = 0.45
Identities = 21/134 (15%), Positives = 40/134 (29%), Gaps = 17/134 (12%)
Query: 62 SHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPG-----QPQDVKLVTSNSRSI 116
S V + S + Y C ++ + + P L+ S + +
Sbjct: 281 SVVTVPSSS-LGTQTYICNVNHKPSNTKVDKRVEPLSLPSVFLFPPKPKDTLMISRTPEV 339
Query: 117 KVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYT----SSLSIATLS 172
D V+ DP + +W +G+ + + T S L++ +
Sbjct: 340 TCVVVD-------VSHEDPQVKFNWYVDGVQVHNAKTKPREQQYNSTYRVVSVLTVLHQN 392
Query: 173 TGHSGNYTCVASNT 186
Y C SN
Sbjct: 393 WLDGKEYKCKVSNK 406
>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal
regulatory protein alpha, immunoglobulin superfamily,
phosphoprotein; HET: NAG; 2.49A {Homo sapiens}
Length = 327
Score = 50.3 bits (120), Expect = 2e-07
Identities = 33/232 (14%), Positives = 60/232 (25%), Gaps = 23/232 (9%)
Query: 15 QPGPPVSLKCIATGN-PTPHISWK----------LDGYPLAGDRFVMGQYMSLHGDVISH 63
G L C T P I W + R + ++
Sbjct: 16 AAGESAILHCTVTSLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSESTKRENMDFS 75
Query: 64 VNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDR 123
++IS++ D+G Y C R GS + + +
Sbjct: 76 ISISNITPADAGTYYC-VKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSGPAARATPQHT 134
Query: 124 AGVQCLVTKGDP-PLTISWLKNGLPILSDAEIT--IRSSGEYT--SSLSIATLSTGHSGN 178
C P +T+ W KNG + + S Y+ S+ +
Sbjct: 135 VSFTCESHGFSPRDITLKWFKNGNELSDFQTNVDPVGESVSYSIHSTAKVVLTREDVHSQ 194
Query: 179 YTCVASNTVASDN------HSSNLRVNEYTSSLSIATLSTGHSGNYTCVASN 224
C ++ + + S T ++ + + N TC
Sbjct: 195 VICEVAHVTLQGDPLRGTANLSETIRVPPTLEVTQQPVRAENQVNVTCQVRK 246
Score = 49.9 bits (119), Expect = 3e-07
Identities = 34/186 (18%), Positives = 57/186 (30%), Gaps = 18/186 (9%)
Query: 11 QQTLQPGPPVSLKCIATG-NPTP-HISWKLDGYPLAGDRFVMGQYMSLHGD----VISHV 64
P VS C + G +P + W +G L+ + + + S
Sbjct: 126 AARATPQHTVSFTCESHGFSPRDITLKWFKNGNELSDFQT---NVDPVGESVSYSIHSTA 182
Query: 65 NISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRA 124
+ R + C + T D A T V + ++
Sbjct: 183 KVVLTREDVHSQVICEVAH----VTLQGDPLRGTANLSETIRVPPTLEVTQQPVRAENQV 238
Query: 125 GVQCLVTKGDP-PLTISWLKNGLPILSDAEITIR--SSGEYT--SSLSIATLSTGHSGNY 179
V C V K P L ++WL+NG ++ T+ G Y S L + +
Sbjct: 239 NVTCQVRKFYPQRLQLTWLENGNVSRTETASTVTENKDGTYNWMSWLLVNVSAHRDDVKL 298
Query: 180 TCVASN 185
TC +
Sbjct: 299 TCQVEH 304
Score = 38.0 bits (88), Expect = 0.003
Identities = 30/187 (16%), Positives = 61/187 (32%), Gaps = 35/187 (18%)
Query: 104 QDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYT 163
++++++ + S+ V +G+ A + C VT P I W + P E+ +
Sbjct: 2 EELQVIQPDK-SVSVAAGESAILHCTVTSLIPVGPIQWFRGAGPAR---ELIYNQKEGHF 57
Query: 164 SSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVAS 223
++ + ST S+SI+ ++ +G Y CV
Sbjct: 58 PRVTTVSESTKRENM-----------------------DFSISISNITPADAGTYYCVKF 94
Query: 224 NTVASDNH-------SSNLRVNVPPHIGPFTFGELMEGVRTQVACVVQSG-DLPLSLQWY 275
+ D ++R + C ++L+W+
Sbjct: 95 RKGSPDTEFKSGAGTELSVRAKPSAPVVSGPAARATPQHTVSFTCESHGFSPRDITLKWF 154
Query: 276 KNGLAIS 282
KNG +S
Sbjct: 155 KNGNELS 161
>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell
receptor delta, immune system; HET: NAG MAN FUC; 3.40A
{Mus musculus} SCOP: b.1.1.1 b.1.1.2
Length = 207
Score = 49.2 bits (117), Expect = 2e-07
Identities = 32/128 (25%), Positives = 46/128 (35%), Gaps = 10/128 (7%)
Query: 62 SHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHS- 120
S ++I ++EDSG Y C A + GQ V V S+ S
Sbjct: 71 STLHIRDAQLEDSGTYFC-AADTWHISEGYELGTDKLVFGQGTQVT-VEPKSQPPAKPSV 128
Query: 121 ---GDRAGVQCLVTKGDP-PLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHS 176
+ V CLV P +TIS + + D I I SG+Y++ S
Sbjct: 129 FIMKNGTNVACLVKDFYPKEVTISLRSSKKIVEFDPAIVISPSGKYSAVKLGQYGD---S 185
Query: 177 GNYTCVAS 184
+ TC
Sbjct: 186 NSVTCSVQ 193
>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain,
glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens}
PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A
1f6a_B 1g84_A
Length = 323
Score = 49.7 bits (118), Expect = 4e-07
Identities = 26/192 (13%), Positives = 55/192 (28%), Gaps = 27/192 (14%)
Query: 11 QQTLQPGPPVSLKCIATGNPTP----HISWKLDG------YPLAGDRFVMGQYMSLHGDV 60
L ++ C+ ++W ++ G V
Sbjct: 122 PFDLFIRKSPTITCLVVDLAPSKGTVQLTWSRASGKPVNHSTRKEEKQRNGTLT-----V 176
Query: 61 ISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHS 120
S + + + + YQC T+ + P +V + S
Sbjct: 177 TSTLPVGTRDWIEGETYQCRVTHPHLPRALMRSTTKTSGPRAAPEVYAFAT---PEWPGS 233
Query: 121 GDRAGVQCLVTKGDPP-LTISWLKNGLPILSDAEITIR----SSGEY--TSSLSIATLST 173
D+ + CL+ P +++ WL N + + T + + S L + T +
Sbjct: 234 RDKRTLACLIQNFMPEDISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEV-TRAE 292
Query: 174 GHSGN-YTCVAS 184
+ + C A
Sbjct: 293 WEQKDEFICRAV 304
Score = 38.5 bits (89), Expect = 0.001
Identities = 30/136 (22%), Positives = 51/136 (37%), Gaps = 13/136 (9%)
Query: 106 VKLVTSNSRSIKVHSGDRAGVQCLVTKGDP-PLTISWLKNGLPILSDAE--ITIRSSGEY 162
VK++ S S H + CLV+ P + I+WL++G + D T +
Sbjct: 10 VKILQS-SCDGGGHFPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELA 68
Query: 163 T--SSLSIATLSTGHSGNYTCVAS-------NTVASDNHSSNLRVNEYTSSLSIATLSTG 213
+ S L+++ YTC + ++ S+ V+ Y S S L
Sbjct: 69 STQSELTLSQKHWLSDRTYTCQVTYQGHTFEDSTKKCADSNPRGVSAYLSRPSPFDLFIR 128
Query: 214 HSGNYTCVASNTVASD 229
S TC+ + S
Sbjct: 129 KSPTITCLVVDLAPSK 144
Score = 35.4 bits (81), Expect = 0.015
Identities = 40/296 (13%), Positives = 80/296 (27%), Gaps = 62/296 (20%)
Query: 12 QTLQPGPPVSLKCIATG-NPTPH-ISWKLDGYPLAGDRFVM------GQYMSLHGDVISH 63
P + L C+ +G P I+W DG + D S
Sbjct: 19 GGGHFPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELAS-----TQSE 73
Query: 64 VNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDR 123
+ +S Y C T + G + + D+ + L + + +
Sbjct: 74 LTLSQKHWLSDRTYTCQVTYQ-GHTFEDSTKKCADSNPRGVSAYLSRPSPFDLFI--RKS 130
Query: 124 AGVQCLVTK---GDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYT 180
+ CLV + ++W + ++ + T ++
Sbjct: 131 PTITCLVVDLAPSKGTVQLTWSRASGKPVNHSTRKEEKQRNGTLTV-------------- 176
Query: 181 CVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVP 240
TS+L + T Y C ++ +
Sbjct: 177 ---------------------TSTLPVGTRDWIEGETYQCRVTHPHLPRALMRSTTKTSG 215
Query: 241 PHIGPFTF-----GELMEGVRTQVACVVQSGDLP--LSLQWYKNGLAISQPDISIT 289
P P + + +AC++ +P +S+QW N + + S T
Sbjct: 216 PRAAPEVYAFATPEWPGSRDKRTLACLI-QNFMPEDISVQWLHNEVQLPDARHSTT 270
>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL
BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2
b.1.1.2 PDB: 1i1a_D*
Length = 239
Score = 48.8 bits (116), Expect = 5e-07
Identities = 29/190 (15%), Positives = 59/190 (31%), Gaps = 25/190 (13%)
Query: 11 QQTLQPGPPVSLKCIATG----NPTPHISWKLDGYPLAG------DRFVMGQYMSLHGDV 60
+ L G + C+ +P SW +D + ++
Sbjct: 26 KDVLGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLR-----S 80
Query: 61 ISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHS 120
+S + I + ++C + + + + V + + +
Sbjct: 81 VSELPIVERDWLNGKTFKCKVNSGAFPAPIEKSISKPEGTPRGPQVYTMAP---PKEEMT 137
Query: 121 GDRAGVQCLVTKGDPP-LTISWLKNGLPILSDA--EITIRSSGEY--TSSLSIATLSTGH 175
+ + C+V PP + W NG P + T+ + G Y S L++ T
Sbjct: 138 QSQVSITCMVKGFYPPDIYTEWKMNGQPQENYKNTPPTMDTDGSYFLYSKLNV-KKETWQ 196
Query: 176 SGN-YTCVAS 184
GN +TC
Sbjct: 197 QGNTFTCSVL 206
>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural
genomics, PSI-biology, NEW YORK struc genomics research
consortium, nysgrc; 2.30A {Homo sapiens}
Length = 124
Score = 46.5 bits (110), Expect = 6e-07
Identities = 17/97 (17%), Positives = 39/97 (40%), Gaps = 6/97 (6%)
Query: 12 QTLQPGPPVSLKCIATGNPTPHISW-KLDGYPLAGDRFVM---GQYMSLHGDVIS-HVNI 66
T++ G ++LKC+ + + W G+ + + + + +Y LH + +
Sbjct: 11 ITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQLSITV 70
Query: 67 SSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQP 103
+V ++D G+Y+C + T + V
Sbjct: 71 PNVTLQDEGVYKCLHYSD-SVSTKEVKVIVLATMKGE 106
Score = 43.8 bits (103), Expect = 7e-06
Identities = 15/98 (15%), Positives = 39/98 (39%), Gaps = 10/98 (10%)
Query: 109 VTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLK--------NGLPILSDAEITIRSSG 160
+T+++ +I V G ++C+ ++ WL N P+L +++ +
Sbjct: 4 LTNHTETITVEEGQTLTLKCVT-SLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHS 62
Query: 161 EYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRV 198
S+++ ++ G Y C+ + + + V
Sbjct: 63 ANQLSITVPNVTLQDEGVYKCLH-YSDSVSTKEVKVIV 99
>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells,
immunological receptors, immunoglobulin fold; 1.70A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D
2dli_A 2dl2_A 3h8n_A
Length = 201
Score = 47.2 bits (112), Expect = 1e-06
Identities = 27/180 (15%), Positives = 54/180 (30%), Gaps = 18/180 (10%)
Query: 12 QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRV 71
++ V L+C + H +G R + + + S IS +
Sbjct: 17 PLVKSEETVILQCWSD-VMFEHFLLHREGMFNDTLRLIGEHHDGVSKANFS---ISRMTQ 72
Query: 72 EDSGIYQCTATNRVGSQTHSA-----DMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGV 126
+ +G Y+C + SA D+ + +P S V +G+ +
Sbjct: 73 DLAGTYRCYGSVTHSPYQVSAPSDPLDIVIIGLYEKP-----SLSAQPGPTVLAGENVTL 127
Query: 127 QCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNT 186
C + + G + +G + + + + H G Y C S
Sbjct: 128 SC--SSRSSYDMYHLSREGEAHERRLPAGPKVNGTFQADFPLGPAT--HGGTYRCFGSFH 183
Score = 29.5 bits (66), Expect = 0.97
Identities = 10/81 (12%), Positives = 21/81 (25%), Gaps = 6/81 (7%)
Query: 12 QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRV 71
T+ G V+L C + + + + G+ + +
Sbjct: 117 PTVLAGENVTLSCSSRSSYDMYHLSR------EGEAHERRLPAGPKVNGTFQADFPLGPA 170
Query: 72 EDSGIYQCTATNRVGSQTHSA 92
G Y+C + S
Sbjct: 171 THGGTYRCFGSFHDSPYEWSK 191
Score = 28.0 bits (62), Expect = 3.5
Identities = 15/103 (14%), Positives = 32/103 (31%), Gaps = 10/103 (9%)
Query: 189 SDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASD---NHSSNLRVNV-----P 240
+ ++ SI+ ++ +G Y C S T + S L + +
Sbjct: 49 TLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGSVTHSPYQVSAPSDPLDIVIIGLYEK 108
Query: 241 PHIGPFTFGELMEGVRTQVACVVQSGDLPLSLQWYKNGLAISQ 283
P + ++ G ++C S + G A +
Sbjct: 109 PSLSAQPGPTVLAGENVTLSC--SSRSSYDMYHLSREGEAHER 149
>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG
BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1
b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*
Length = 457
Score = 47.2 bits (112), Expect = 3e-06
Identities = 34/191 (17%), Positives = 67/191 (35%), Gaps = 27/191 (14%)
Query: 11 QQTLQPGPPVSLKCIATG----NPTPHISWKLDGYPLAG------DRFVMGQYMSLHGDV 60
+ TL + C+ +P +W +DG + + Y V
Sbjct: 258 KDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYR-----V 312
Query: 61 ISHVNISSVRVEDSGIYQCTATNR-VGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVH 119
+S + + + Y+C +N+ + + + P +PQ V + S
Sbjct: 313 VSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQ----VYTLPPSRDEL 368
Query: 120 SGDRAGVQCLVTKGDP-PLTISWLKNGLPILSDAEI--TIRSSGEYT--SSLSIATLSTG 174
+ ++ + CLV P + + W NG P + + S G + S L++ S
Sbjct: 369 TKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDK-SRW 427
Query: 175 HSGN-YTCVAS 184
GN ++C
Sbjct: 428 QQGNVFSCSVM 438
Score = 42.2 bits (99), Expect = 1e-04
Identities = 35/132 (26%), Positives = 51/132 (38%), Gaps = 20/132 (15%)
Query: 66 ISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSI--------- 116
+ S+R D+ +Y C D D G+ V V+S S
Sbjct: 83 LRSLRSADTAVYYCARVGPYSWDDSPQDNYYMDVWGKGTTVI-VSSASTKGPSVFPLAPS 141
Query: 117 -KVHSGDRAGVQCLVTKGDP-PLTISWLKNGLPILSDAEIT----IRSSGEYT-SSLSIA 169
K SG A + CLV P P+T+SW L+ T ++SSG Y+ SS+
Sbjct: 142 SKSTSGGTAALGCLVKDYFPEPVTVSWNSGA---LTSGVHTFPAVLQSSGLYSLSSVVTV 198
Query: 170 TLSTGHSGNYTC 181
S+ + Y C
Sbjct: 199 PSSSLGTQTYIC 210
Score = 28.3 bits (63), Expect = 3.4
Identities = 42/245 (17%), Positives = 69/245 (28%), Gaps = 33/245 (13%)
Query: 15 QPGPPVSLKCIATG-NPTPH-ISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVE 72
G +L C+ P P +SW F S + S V + S +
Sbjct: 145 TSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSL- 203
Query: 73 DSGIYQCTATNRVGS-------------QTHSADMRVYDAPGQPQDVKLVTSNSRSIKVH 119
+ Y C ++ + +TH+ V L + +
Sbjct: 204 GTQTYICNVNHKPSNTKVDKKAEPKSCDKTHTCPPCPAPELLGGPSVFLFPPKPKDT-LM 262
Query: 120 SGDRAGVQCLVT---KGDPPLTISWLKNGLPILSDAEITIRSSGEYT----SSLSIATLS 172
V C+V DP + +W +G+ + + T S L++
Sbjct: 263 ISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQD 322
Query: 173 TGHSGNYTCVASN--------TVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASN 224
+ Y C SN S YT S L T + + TC+
Sbjct: 323 WLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDEL-TKNQVSLTCLVKG 381
Query: 225 TVASD 229
SD
Sbjct: 382 FYPSD 386
>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion;
2.40A {Homo sapiens}
Length = 145
Score = 45.2 bits (106), Expect = 3e-06
Identities = 21/98 (21%), Positives = 36/98 (36%), Gaps = 6/98 (6%)
Query: 12 QTLQPGPPVSLKCIATGNPTPHISW-KLDGYPLA--GDRFVMGQYMSLHGDVISHVN--I 66
+T+ G V LKC + + W L R + + L ++ I
Sbjct: 48 ETVVAGGTVVLKCQVKDHEDSSLQWSNPAQQTLYFGEKRALRDNRIQLVTSTPHELSISI 107
Query: 67 SSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQ 104
S+V + D G Y C+ +T + + V P +P
Sbjct: 108 SNVALADEGEYTCSIFTM-PVRTAKSLVTVLGIPQKPI 144
Score = 32.5 bits (73), Expect = 0.070
Identities = 25/137 (18%), Positives = 43/137 (31%), Gaps = 14/137 (10%)
Query: 74 SGIYQCTATNRVGSQTHSADMRVYDAP----GQPQDVKLVTSNSRSIKVHSGDRAGVQCL 129
SG+ + A S D+ D + V +G ++C
Sbjct: 2 SGMKETAAAKFERQHMDSPDLGTDDDDKAMADINLSQDDSQPWTSDETVVAGGTVVLKC- 60
Query: 130 VTKGDPPLTISWLKNGLPIL--------SDAEITIRSSGEYTSSLSIATLSTGHSGNYTC 181
K ++ W L D I + +S + S+SI+ ++ G YTC
Sbjct: 61 QVKDHEDSSLQWSNPAQQTLYFGEKRALRDNRIQLVTSTPHELSISISNVALADEGEYTC 120
Query: 182 VASNTVASDNHSSNLRV 198
T+ S + V
Sbjct: 121 SI-FTMPVRTAKSLVTV 136
>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond,
glycoprotein, immunoglobulin membrane, transmembrane;
HET: NAG; 2.21A {Mus musculus}
Length = 108
Score = 44.1 bits (104), Expect = 4e-06
Identities = 19/93 (20%), Positives = 31/93 (33%), Gaps = 6/93 (6%)
Query: 13 TLQPGPPVSLKCIATGNPTPHISW-KLDGYPLAGDRFVMGQY--MSLHGDVISHVN--IS 67
T+ G L C N + W L D + + L ++ +S
Sbjct: 17 TVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISVS 76
Query: 68 SVRVEDSGIYQCTATNRVGSQTHSADMRVYDAP 100
V + D G Y C+ + +T A + V P
Sbjct: 77 DVSLSDEGQYTCSL-FTMPVKTSKAYLTVLGVP 108
Score = 39.1 bits (91), Expect = 2e-04
Identities = 19/94 (20%), Positives = 36/94 (38%), Gaps = 10/94 (10%)
Query: 113 SRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPIL--------SDAEITIRSSGEYTS 164
++++ V G A + C V + ++ W L D I + + +
Sbjct: 13 TQNVTVVEGGTAILTCRV-DQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHEL 71
Query: 165 SLSIATLSTGHSGNYTCVASNTVASDNHSSNLRV 198
S+S++ +S G YTC T+ + L V
Sbjct: 72 SISVSDVSLSDEGQYTCSL-FTMPVKTSKAYLTV 104
>3pv7_A B7-H6, IG-like domain-containing protein
DKFZP686O24166/DKFZP686I21167; NK cell receptor,
receptor-ligand complex, immune system; HET: NAG; 2.00A
{Homo sapiens} PDB: 3pv6_A*
Length = 248
Score = 45.8 bits (108), Expect = 5e-06
Identities = 26/154 (16%), Positives = 48/154 (31%), Gaps = 20/154 (12%)
Query: 65 NISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRA 124
+ +++E++G Y+C + + V +P +L+ +
Sbjct: 85 RLPGIQLEEAGEYRCEVVVTPLKAQGTVQLEVVASP----ASRLLLDQVGM----KENED 136
Query: 125 GVQCLVTKGDP-PLTISWLKNGLPILSDAEITI---------RSSGEY--TSSLSIATLS 172
C + P + I+W K EI+ G + TS L + +
Sbjct: 137 KYMCESSGFYPEAINITWEKQTQKFPHPIEISEDVITGPTIKNMDGTFNVTSCLKLNSSQ 196
Query: 173 TGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLS 206
Y CV + SN + SLS
Sbjct: 197 EDPGTVYQCVVRHASLHTPLRSNFTLTAARHSLS 230
Score = 35.8 bits (82), Expect = 0.009
Identities = 17/83 (20%), Positives = 26/83 (31%), Gaps = 3/83 (3%)
Query: 204 SLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGPFTFGELMEGVRTQVACVV 263
SL + + +G Y C T + L V P M+ + C
Sbjct: 83 SLRLPGIQLEEAGEYRCEVVVTPLKAQGTVQLEVVASPASRLLLDQVGMKENEDKYMCES 142
Query: 264 QSGDLP--LSLQWYKNGLAISQP 284
SG P +++ W K P
Sbjct: 143 -SGFYPEAINITWEKQTQKFPHP 164
Score = 30.4 bits (68), Expect = 0.51
Identities = 13/86 (15%), Positives = 30/86 (34%), Gaps = 10/86 (11%)
Query: 9 FIQQTLQPGPPVSLKCIATG-NPTP-HISWKLDGYPLAGDRFVMGQYMS----LHGD--- 59
+ Q C ++G P +I+W+ + ++ + D
Sbjct: 125 LLDQVGMKENEDKYMCESSGFYPEAINITWEKQTQKFPHPIEISEDVITGPTIKNMDGTF 184
Query: 60 -VISHVNISSVRVEDSGIYQCTATNR 84
V S + ++S + + +YQC +
Sbjct: 185 NVTSCLKLNSSQEDPGTVYQCVVRHA 210
>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN;
1.75A {Gallus gallus}
Length = 231
Score = 45.0 bits (106), Expect = 8e-06
Identities = 28/197 (14%), Positives = 62/197 (31%), Gaps = 21/197 (10%)
Query: 14 LQPGPPVSLKCIATGNPTP---HISWKLDGYPLAGDRFVMGQYMSLHGD----VISHVNI 66
L L+C+ P+ ++W + +G+ + H + S V +
Sbjct: 25 LYISLDAKLRCLVVNLPSDSSLSVTWTREK---SGNLRPDPMVLQEHFNGTYSASSAVPV 81
Query: 67 SSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGV 126
S+ + CT + S + P P + + + S R +
Sbjct: 82 STQDWLSGERFTCTVQHEELPLPLSKSVYRNTGPTTPPLIYPFAPHPEEL---SLSRVTL 138
Query: 127 QCLVTKGDPP-LTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASN 185
CLV P + I WL++ + + +T E ++ + G + +
Sbjct: 139 SCLVRGFRPRDIEIRWLRDHRAVPATEFVTTAVLPEERTA----NGAGGDGDTFFVYSKM 194
Query: 186 TVASDNHSSNLRVNEYT 202
+V + + +
Sbjct: 195 SVETAKWNGG---TVFA 208
>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin,
glycosylation, immune system; HET: NAG FUC MAN GAL;
2.13A {Mus musculus}
Length = 218
Score = 44.9 bits (106), Expect = 9e-06
Identities = 28/191 (14%), Positives = 59/191 (30%), Gaps = 25/191 (13%)
Query: 10 IQQTLQPGPPVSLKCIATG----NPTPHISWKLDGYPLAG------DRFVMGQYMSLHGD 59
I+ L + C+ +P ISW ++ +
Sbjct: 19 IKDVLMISLTPKVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTIR----- 73
Query: 60 VISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVH 119
V+S + I ++C N+ + + V ++ + +
Sbjct: 74 VVSTLPIQHQDWMSGKEFKCKVNNKDLPSPIERTISKIKGLVRAPQVYILPPPAEQL--- 130
Query: 120 SGDRAGVQCLVTKGDPP-LTISWLKNGLPILSDAEIT--IRSSGEY--TSSLSIATLSTG 174
S + CLV +P +++ W NG + + + S G Y S L++ S
Sbjct: 131 SRKDVSLTCLVVGFNPGDISVEWTSNGHTEENYKDTAPVLDSDGSYFIYSKLNM-KTSKW 189
Query: 175 HSGN-YTCVAS 184
+ ++C
Sbjct: 190 EKTDSFSCNVR 200
Score = 27.6 bits (61), Expect = 3.8
Identities = 17/70 (24%), Positives = 25/70 (35%), Gaps = 7/70 (10%)
Query: 124 AGVQCLVTK---GDPPLTISWLKNGLPILSDAEITIRSSGEYT----SSLSIATLSTGHS 176
V C+V DP + ISW N + + + T R T S+L I
Sbjct: 29 PKVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTIRVVSTLPIQHQDWMSG 88
Query: 177 GNYTCVASNT 186
+ C +N
Sbjct: 89 KEFKCKVNNK 98
>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II,
MEM receptor, molecular mimicry, multiple sclerosis,
immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo
sapiens}
Length = 279
Score = 44.5 bits (105), Expect = 1e-05
Identities = 35/203 (17%), Positives = 63/203 (31%), Gaps = 40/203 (19%)
Query: 15 QPGPPVSLKCIATGNPTPHISW---------KLDGYPLAGD------RFVMGQYM-SLHG 58
+ G V ++C + + W L G +++ +
Sbjct: 37 KSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHAS 96
Query: 59 DVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKV 118
+S + ++S EDS Y C+A T A+ + PG V N +V
Sbjct: 97 LTLSTLTVTSAHPEDSSFYICSA----RDLTSGANNEQFFGPGTRLTVTEDLKNVFPPEV 152
Query: 119 ----------HSGDRAGVQCLVTKGDP-PLTISWLKNGLPILSDAEITIRSSGEYTSSLS 167
+A + CL T P + +SW NG + SG T
Sbjct: 153 AVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEV---------HSGVSTDPQP 203
Query: 168 IATLSTGHSGNYTCVASNTVASD 190
+ + Y+ + V++
Sbjct: 204 LKEQPALNDSRYSLSSRLRVSAT 226
>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C
region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC;
2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2
b.1.1.2
Length = 444
Score = 44.9 bits (106), Expect = 1e-05
Identities = 28/190 (14%), Positives = 56/190 (29%), Gaps = 25/190 (13%)
Query: 11 QQTLQPGPPVSLKCIATG----NPTPHISWKLDGYPLAG------DRFVMGQYMSLHGDV 60
+ L + C+ +P ISW ++ + V
Sbjct: 249 KDVLMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLR-----V 303
Query: 61 ISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHS 120
+S + I ++C N+ + + G + ++ + +
Sbjct: 304 VSALPIQHQDWMSGKEFKCKVNNK--DLPAPIERTISKPKGSVRAPQVYVLPP-PEEEMT 360
Query: 121 GDRAGVQCLVTKGDP-PLTISWLKNGLPILSDAEI--TIRSSGEYT--SSLSIATLSTGH 175
+ + C+VT P + + W NG L+ + S G Y S L +
Sbjct: 361 KKQVTLTCMVTDFMPEDIYVEWTNNGKTELNYKNTEPVLDSDGSYFMYSKLRVEK-KNWV 419
Query: 176 SGN-YTCVAS 184
N Y+C
Sbjct: 420 ERNSYSCSVV 429
Score = 37.2 bits (86), Expect = 0.005
Identities = 46/224 (20%), Positives = 67/224 (29%), Gaps = 35/224 (15%)
Query: 66 ISSVRVEDSGIYQCTATNRV------GSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVH 119
+S ++ ED+ +Y C G T + V A V +
Sbjct: 83 MSRLKSEDTAMYYCARHGGYYAMDYWGQGTT---VTVSSAKTTAPSVYPLAPVCGD---T 136
Query: 120 SGDRAGVQCLVTKGDP-PLTISWLKNGLPILSDAEITIRSSGEYT-SSLSIATLSTGHSG 177
+G + CLV P P+T++W L + S YT SS T ST S
Sbjct: 137 TGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPSQ 196
Query: 178 NYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRV 237
+ TC V SS + + N V
Sbjct: 197 SITC---------------NVAHPASSTKVDKKIEPRGPTIKPCPPCKCPAPNLLGGPSV 241
Query: 238 NVPPHIGPFTFGELMEGVRTQVACVVQ---SGDLPLSLQWYKNG 278
+ P P LM + V CVV D + + W+ N
Sbjct: 242 FIFP---PKIKDVLMISLSPIVTCVVVDVSEDDPDVQISWFVNN 282
Score = 31.0 bits (70), Expect = 0.40
Identities = 34/202 (16%), Positives = 57/202 (28%), Gaps = 42/202 (20%)
Query: 15 QPGPPVSLKCIATG-NPTPH-ISWKLDG-------YP--LAGDRFVMGQYMSLHGDVISH 63
G V+L C+ G P P ++W +P L D + + S
Sbjct: 136 TTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTL----------SSS 185
Query: 64 VNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVH---- 119
V ++S C + S + +P + +
Sbjct: 186 VTVTSSTWPSQS-ITCNVAHPASSTKVDKKIEPRGPTIKPCPPCKCPAPNLLGGPSVFIF 244
Query: 120 ---------SGDRAGVQCLVT---KGDPPLTISWLKNGLPILSDAEITIRSSGEYT---- 163
V C+V + DP + ISW N + + + T R T
Sbjct: 245 PPKIKDVLMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVV 304
Query: 164 SSLSIATLSTGHSGNYTCVASN 185
S+L I + C +N
Sbjct: 305 SALPIQHQDWMSGKEFKCKVNN 326
>3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin
domain, microsome, protein disulfide isomerase,
thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo
sapiens}
Length = 401
Score = 44.6 bits (104), Expect = 2e-05
Identities = 20/133 (15%), Positives = 36/133 (27%), Gaps = 19/133 (14%)
Query: 66 ISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAG 125
+ V+ G Y T + ++ VY P + + +
Sbjct: 258 LPRVQPFQEGTYLATIHLPYLQGQVTLELAVYKPP-----KVSLMPATLARAAPGEAPPE 312
Query: 126 VQCLVTKGDP--PLTISWLKNGLPILSDAEITIRSSGEY-----------TSSLSIATLS 172
+ CLV+ P L + W G P + + + L ++
Sbjct: 313 LLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSALRHHSDGSVSLSGHLQPPPVT 372
Query: 173 TGHSGN-YTCVAS 184
T G Y C
Sbjct: 373 TEQHGARYACRIH 385
Score = 36.1 bits (82), Expect = 0.011
Identities = 31/230 (13%), Positives = 65/230 (28%), Gaps = 15/230 (6%)
Query: 67 SSVRVEDSGIYQCTATNRVGSQTHSADMRVY-DAPGQPQDVKL------VTSNSRSIKVH 119
+ R D + ++ + S+ +R + +P + + V +++ + +V
Sbjct: 114 NCPRALDGAWLMVSISS--PVLSLSSLLRPQPEPQQEPVLITMATVVLTVLTHTPAPRVR 171
Query: 120 SGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNY 179
G A + P + P E + G+ L AT
Sbjct: 172 LGQDALLDLSFAYMPPTSEAASSLAPGPPPFGLEWRRQHLGK-GHLLLAATPGLNGQMPA 230
Query: 180 TCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNV 239
+ A+ + + + + G Y + L V
Sbjct: 231 AQEGAVAFAAWDDDEPWGPWTGNGTFWLPRVQPFQEGTYLATIHLPYLQGQVTLELAVYK 290
Query: 240 PP--HIGPFTFGELMEG-VRTQVACVVQSG--DLPLSLQWYKNGLAISQP 284
PP + P T G ++ C+V L ++W G +
Sbjct: 291 PPKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRS 340
>3nfj_J T cell receptor beta chain; immunoglobulin family, immune system;
2.68A {Homo sapiens} PDB: 3hg1_E
Length = 245
Score = 43.7 bits (103), Expect = 2e-05
Identities = 42/232 (18%), Positives = 67/232 (28%), Gaps = 58/232 (25%)
Query: 15 QPGPPVSLKCIATGNPTPHISW---------KLDGYPLAG--------DRFVMGQYMSLH 57
G P+SL+C G P++ W +L Y + S
Sbjct: 14 PVGSPLSLECTVEGTSNPNLYWYRQAAGRGLQLLFYSVGIGQISSEVPQNLSA----SRP 69
Query: 58 GDVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIK 117
D ++ + + DSG Y C + VG+ + Y G V + +
Sbjct: 70 QDRQFILSSKKLLLSDSGFYLCAWSVSVGAGVPTI----YFGEGSWLTVVEDLNKVFPPE 125
Query: 118 VH----------SGDRAGVQCLVTKGDP-PLTISWLKNGLPILSDAEITIRSSGEYTSSL 166
V +A + CL T P + +SW NG + SG T
Sbjct: 126 VAVFEPSEAEISHTQKATLVCLATGFFPDHVELSWWVNGKEV---------HSGVCTDPQ 176
Query: 167 SIATLSTGHSGNYTCVASNTVASDNHSSNLRV--NEYTSSLSIATLSTGHSG 216
+ + Y SS LRV + + + G
Sbjct: 177 PLKEQPALNDSRYAL-----------SSRLRVSATFWQNPRNHFRCQVQFYG 217
>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor,
adhesion, structural genomics, NEW YORK STR genomics
research consortium, nysgrc; 1.70A {Homo sapiens} PDB:
3rq3_A 3udw_A* 3ucr_A
Length = 117
Score = 41.8 bits (98), Expect = 3e-05
Identities = 19/104 (18%), Positives = 38/104 (36%), Gaps = 9/104 (8%)
Query: 13 TLQPGPPVSLKCIATGNPTP--HISWKLDGYPLAGDRFVMGQYMS--LHGDVISHVN--- 65
+ + G + L+C + ++W+ LA +G ++S V
Sbjct: 14 SAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAPGPGLGL 73
Query: 66 -ISSVRVEDSGIYQCT-ATNRVGSQTHSADMRVYDAPGQPQDVK 107
+ S+ V D+G Y C T G+ T + V ++ +
Sbjct: 74 TLQSLTVNDTGEYFCIYHTYPDGTYTGRIFLEVLESSVAEHGAR 117
Score = 29.9 bits (67), Expect = 0.37
Identities = 14/97 (14%), Positives = 32/97 (32%), Gaps = 11/97 (11%)
Query: 113 SRSIKVHSGDRAGVQCLVTKGDPPLT-ISWLKNGLPILS---------DAEITIRSSGEY 162
+ +I G +QC ++ +T ++W + + R +
Sbjct: 10 TGNISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAPGP 69
Query: 163 TSSLSIATLSTGHSGNYTC-VASNTVASDNHSSNLRV 198
L++ +L+ +G Y C + + L V
Sbjct: 70 GLGLTLQSLTVNDTGEYFCIYHTYPDGTYTGRIFLEV 106
Score = 28.7 bits (64), Expect = 1.0
Identities = 9/47 (19%), Positives = 16/47 (34%), Gaps = 2/47 (4%)
Query: 197 RVNEYTS-SLSIATLSTGHSGNYTC-VASNTVASDNHSSNLRVNVPP 241
RV L++ +L+ +G Y C + + L V
Sbjct: 64 RVAPGPGLGLTLQSLTVNDTGEYFCIYHTYPDGTYTGRIFLEVLESS 110
>3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding
homology region (CHR), cell MEMB disease mutation,
glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo
sapiens}
Length = 483
Score = 44.1 bits (103), Expect = 3e-05
Identities = 11/108 (10%), Positives = 26/108 (24%), Gaps = 14/108 (12%)
Query: 12 QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRV 71
+ + G ++ C++ + + + D +V I +
Sbjct: 208 KVILVGSDITFCCVSQEKVLSALIGHTNCPLIHLDG--------------ENVAIKIRNI 253
Query: 72 EDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVH 119
S + P PQ + T + + I
Sbjct: 254 SVSASSGTNVVFTTEDNIFGTVIFAGYPPDTPQQLNCETHDLKEIICS 301
Score = 36.0 bits (82), Expect = 0.011
Identities = 18/120 (15%), Positives = 36/120 (30%), Gaps = 16/120 (13%)
Query: 16 PGPPVSLKCIATGNPTPHISWKLD-----------GYPL---AGDRFVMGQYMSLHGDVI 61
P P L C SW Y L ++V + +
Sbjct: 282 PDTPQQLNCETHDLKEIICSWNPGRVTALVGPRATSYTLVESFSGKYVRLKRAEAPTNES 341
Query: 62 SHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYD--APGQPQDVKLVTSNSRSIKVH 119
+ + ++ + A N +G + + + + P P K+ NS ++K+
Sbjct: 342 YQLLFQMLPNQEIYNFTLNAHNPLGRSQSTILVNITEKVYPHTPTSFKVKDINSTAVKLS 401
>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens}
PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E
Length = 246
Score = 42.5 bits (100), Expect = 7e-05
Identities = 33/203 (16%), Positives = 61/203 (30%), Gaps = 42/203 (20%)
Query: 15 QPGPPVSLKCIATGNPTPHISW---------KLDGYPLAGD------RFVMGQYM-SLHG 58
+ G V ++C + + W L G +++ +
Sbjct: 14 KSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHAS 73
Query: 59 DVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKV 118
+S + ++S EDS Y C+ ++T + PG V N +V
Sbjct: 74 LTLSTLTVTSAHPEDSSFYICS------ARTSGDFGEQFFGPGTRLTVLEDLKNVFPPEV 127
Query: 119 ----------HSGDRAGVQCLVTKGDP-PLTISWLKNGLPILSDAEITIRSSGEYTSSLS 167
+A + CL T P + +SW NG + SG T
Sbjct: 128 AVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEV---------HSGVCTDPQP 178
Query: 168 IATLSTGHSGNYTCVASNTVASD 190
+ + Y + V++
Sbjct: 179 LKEQPALNDSRYALSSRLRVSAT 201
>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse
IGG, zinc-finger, DNA-binding, RNA-binding, tripartite
motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus
musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A
Length = 207
Score = 42.2 bits (99), Expect = 7e-05
Identities = 28/191 (14%), Positives = 60/191 (31%), Gaps = 25/191 (13%)
Query: 10 IQQTLQPGPPVSLKCIATG----NPTPHISWKLDGYPLAG------DRFVMGQYMSLHGD 59
+ L + C+ +P SW +D + + +
Sbjct: 11 PKDVLTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTKPREEQFNSTFR----- 65
Query: 60 VISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVH 119
+S + I + ++C + + + V + +
Sbjct: 66 SVSELPIMHQDWLNGKEFKCRVNSAAFPAPIEKTISKTKGRPKAPQVYTLPP---PKEQM 122
Query: 120 SGDRAGVQCLVTKGDPP-LTISWLKNGLPILSDAEIT--IRSSGEY--TSSLSIATLSTG 174
+ D+ + C++T P +T+ W NG P + + + G Y S L++ S
Sbjct: 123 AKDKVSLTCMITDFFPEDITVEWESNGQPAENYKNTQPIMDTDGSYFVYSKLNV-QKSNW 181
Query: 175 HSGN-YTCVAS 184
+GN +TC
Sbjct: 182 EAGNTFTCSVL 192
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.1 bits (101), Expect = 9e-05
Identities = 56/299 (18%), Positives = 85/299 (28%), Gaps = 98/299 (32%)
Query: 11 QQTLQPGPPVSL------KCIATGN--PTPHISWKLDGYPLAG-DRFVMGQYMSLHGDVI 61
+ P SL + P+P +S + +V + H
Sbjct: 311 YEAY---PNTSLPPSILEDSLENNEGVPSPMLS--ISNLTQEQVQDYV--NKTNSHLPAG 363
Query: 62 SHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSG 121
V IS V A N V S G PQ + + R K SG
Sbjct: 364 KQVEISLV---------NGAKNLVVS-------------GPPQSLYGLNLTLRKAKAPSG 401
Query: 122 DRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTC 181
Q + + L S LP+ + + HS +
Sbjct: 402 LD---QSRIPFSERKLKFSN--RFLPV----------ASPF------------HS-HLLV 433
Query: 182 VASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNV-- 239
AS+ + D +N+ N + I T G+ V S +++ +R+ V
Sbjct: 434 PASDLINKDLVKNNVSFN--AKDIQIPVYDT-FDGSDLRVLSGSISERIVDCIIRLPVKW 490
Query: 240 -------PPHI---GP---FTFGELME------GVRTQVACVVQSGDL---PLSLQWYK 276
HI GP G L GVR V+ +G L P +K
Sbjct: 491 ETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVR-----VIVAGTLDINPDDDYGFK 544
Score = 28.5 bits (63), Expect = 3.8
Identities = 26/143 (18%), Positives = 34/143 (23%), Gaps = 78/143 (54%)
Query: 158 SSGEYT------SSLSIATL------------------STGHSGNYTCVASN---TVASD 190
S GEY +SI +L G S NY +A N AS
Sbjct: 1763 SLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRS-NYGMIAINPGRVAASF 1821
Query: 191 NHSSNLRVNEYTSS-----LSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGP 245
+ + V E + I NY NV
Sbjct: 1822 SQEALQYVVERVGKRTGWLVEIV--------NY-------------------NVE----- 1849
Query: 246 FTFGELMEGVRTQVACVVQSGDL 268
+ Q +GDL
Sbjct: 1850 ---NQ-------QYVA---AGDL 1859
>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A
1r70_B 3cm9_A
Length = 475
Score = 42.6 bits (100), Expect = 1e-04
Identities = 35/256 (13%), Positives = 70/256 (27%), Gaps = 36/256 (14%)
Query: 6 IYKFIQQTLQPGPPVSLKCIATG-NPTPHI--SWKLDGYPLAGDRF--VMGQYMSLHGDV 60
++ + QP V + C+ G P + +W G + F L+
Sbjct: 130 VFPLSLCSTQPDGNVVIACLVQGFFPQEPLSVTWSESGQGVTARNFPPSQDASGDLY-TT 188
Query: 61 ISHVNISSVRVEDSGIYQCTATNRVGS----------------QTHSADMRVYDAPGQPQ 104
S + + + + C + + S + P+
Sbjct: 189 SSQLTLPATQCLAGKSVTCHVKHYTNPSQDVTVPCPVPSTPPTPSPSTPPTPSPSCCHPR 248
Query: 105 DVKLVTSNSRSIKVHSGDRAGVQCLVT--KGDPPLTISWLKNGLPILSDAEITIRSSGEY 162
+ L + G A + C +T + +T +W + G Y
Sbjct: 249 -LSLHRPALEDLL--LGSEANLTCTLTGLRDASGVTFTWTPSSGKSAVQGPPERDLCGCY 305
Query: 163 --TSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNE-------YTSSLSIATLSTG 213
+S L H +TC A+ + ++ L + + L+
Sbjct: 306 SVSSVLPGCAEPWNHGKTFTCTAAYPESKTPLTATLSKSGNTFRPEVHLLPPPSEELALN 365
Query: 214 HSGNYTCVASNTVASD 229
TC+A D
Sbjct: 366 ELVTLTCLARGFSPKD 381
Score = 38.8 bits (90), Expect = 0.001
Identities = 30/130 (23%), Positives = 51/130 (39%), Gaps = 20/130 (15%)
Query: 66 ISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKV------- 118
+SS+R ED+ +Y C R ++ D GQ V + +++ S KV
Sbjct: 84 LSSLRPEDTAVYYCA---RDPYGGGKSEF---DYWGQGTLVTVSSASPTSPKVFPLSLCS 137
Query: 119 -HSGDRAGVQCLVTKGDP--PLTISWLKNGLPILSDA--EITIRSSGEYT--SSLSIATL 171
+ CLV P PL+++W ++G + + S YT S L++
Sbjct: 138 TQPDGNVVIACLVQGFFPQEPLSVTWSESGQGVTARNFPPSQDASGDLYTTSSQLTLPAT 197
Query: 172 STGHSGNYTC 181
+ TC
Sbjct: 198 QCLAGKSVTC 207
>3tjh_C 42F3 alpha; IG MHC, antigen recognition, TCR-PMHC, membrane
receptor, IM system; 2.12A {Mus musculus} PDB: 3tpu_A
3tfk_C 1j8h_D* 1fyt_D* 3rev_A 1mwa_A* 1g6r_A* 1tcr_A*
2ckb_A 1zgl_M 3c5z_A 1i9e_A* 2oi9_B 2e7l_A 2icw_I 3e2h_B
3e3q_D
Length = 226
Score = 41.6 bits (97), Expect = 1e-04
Identities = 34/191 (17%), Positives = 66/191 (34%), Gaps = 33/191 (17%)
Query: 11 QQTLQPGPPVSLKCIATGNPTPHISWKLDGY---PLAGDRFVMGQYMSLHG--------- 58
+ T+ G + L+C + + TP++ W Y P G + ++ Y
Sbjct: 18 RVTVSEGASLQLRCKYSYSATPYLFW----YVQYPRQGLQMLLKYYSGDPVVQGVNGFEA 73
Query: 59 -----DVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSN- 112
D H+ +SV DS +Y C + + ++ G V N
Sbjct: 74 EFSKSDSSFHLRKASVHWSDSAVYFCAVSAKGTGS------KLSFGKGAKLTVSPNIQNP 127
Query: 113 --SRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIAT 170
+ S CL T D +S K+ ++D + S ++ S+ ++A
Sbjct: 128 DPAVYQLRDSKSSDKSVCLFTDFDSQTNVSQSKDSDVYITDKCVLDMRSMDFKSNSAVAW 187
Query: 171 LSTGHSGNYTC 181
+ ++ C
Sbjct: 188 SN---KSDFAC 195
>3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB,
immune system/cytokine complex; 1.90A {Homo sapiens}
SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A*
1f42_A* 1f45_A* 3hmx_A* 3qwr_A*
Length = 306
Score = 40.5 bits (93), Expect = 4e-04
Identities = 35/229 (15%), Positives = 60/229 (26%), Gaps = 26/229 (11%)
Query: 12 QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRV 71
PG V L C I+W LD V+G +L I
Sbjct: 16 YPDAPGEMVVLTC--DTPEEDGITWTLDQSSE-----VLGSGKTLT--------IQVKEF 60
Query: 72 EDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVT 131
D+G Y C V S + + D +K ++ ++C
Sbjct: 61 GDAGQYTCHKGGEVLSHSLLLLHKKEDGIWSTDILKDQ--------KEPKNKTFLRCEAK 112
Query: 132 KGDPPLTISWLKNGLPILSDAEITIRSS---GEYTSSLSIATLSTGHSGNYTCVASNTVA 188
T WL L+ + + R S T + + N S
Sbjct: 113 NYSGRFTCWWLTTISTDLTFSVKSSRGSSDPQGVTCGAATLSAERVRGDNKEYEYSVECQ 172
Query: 189 SDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRV 237
D+ + + A + + + + NL++
Sbjct: 173 EDSACPAAEESLPIEVMVDAVHKLKYEQYTSSFFIRDIIKPDPPKNLQL 221
Score = 30.1 bits (66), Expect = 0.73
Identities = 12/76 (15%), Positives = 23/76 (30%)
Query: 203 SSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGPFTFGELMEGVRTQVACV 262
+L+I G +G YTC V S + + + +T + C
Sbjct: 51 KTLTIQVKEFGDAGQYTCHKGGEVLSHSLLLLHKKEDGIWSTDILKDQKEPKNKTFLRCE 110
Query: 263 VQSGDLPLSLQWYKNG 278
++ + W
Sbjct: 111 AKNYSGRFTCWWLTTI 126
>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane,
immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B*
3q5t_A
Length = 240
Score = 40.0 bits (93), Expect = 4e-04
Identities = 27/141 (19%), Positives = 55/141 (39%), Gaps = 11/141 (7%)
Query: 55 SLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQTHSAD---MRVYDAPGQPQDVKLVTS 111
D S +N+S++ +EDS +Y C ++ R G + + + V + K+
Sbjct: 68 QQFDDYHSEMNMSALELEDSAMYFCASSLRWGDEQYFGPGTRLTVLEDLRNVTPPKVSLF 127
Query: 112 NSRSIKVHSGDRAGVQCLVTKGDP-PLTISWLKNGLPILSDAEITIRSSGEY------TS 164
++ + +A + CL P + +SW NG + S ++ E +S
Sbjct: 128 EPSKAEIANKQKATLVCLARGFFPDHVELSWWVNGKEVHSGVSTDPQAYKESNYSYSLSS 187
Query: 165 SLSIATLSTGHSGN-YTCVAS 184
L ++ + N + C
Sbjct: 188 RLRVSATFWHNPRNHFRCQVQ 208
>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel,
immunoglobulin fold, IGV domain, TIM, immune system;
2.50A {Mus musculus}
Length = 116
Score = 38.4 bits (89), Expect = 4e-04
Identities = 20/131 (15%), Positives = 37/131 (28%), Gaps = 21/131 (16%)
Query: 115 SIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTG 174
+K G + C + T W + P + I ++G ++
Sbjct: 6 EVKGVVGHPVTLPCTYSTYRGITTTCWGRGQCPSSACQNTLIWTNGH--------RVTYQ 57
Query: 175 HSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSN 234
S Y + ++ SL+I SG Y C ++
Sbjct: 58 KSSRYN------LKGHISEGDV-------SLTIENSVESDSGLYCCRVEIPGWFNDQKVT 104
Query: 235 LRVNVPPHIGP 245
+ V P + P
Sbjct: 105 FSLQVKPELVP 115
Score = 34.5 bits (79), Expect = 0.010
Identities = 15/79 (18%), Positives = 25/79 (31%), Gaps = 16/79 (20%)
Query: 17 GPPVSLKCIATGNPTP-HISWKLDGYPLAGDRFVMGQY------------MSLHGDVISH 63
G PV+L C + W P + + + +L G +
Sbjct: 12 GHPVTLPCTYSTYRGITTTCWGRGQCPSSACQNTLIWTNGHRVTYQKSSRYNLKGHISEG 71
Query: 64 ---VNISSVRVEDSGIYQC 79
+ I + DSG+Y C
Sbjct: 72 DVSLTIENSVESDSGLYCC 90
>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C
region, hinge region, immunoglobulin; HET: NAG FUL NDG
BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1
b.1.1.2 b.1.1.2 b.1.1.2
Length = 434
Score = 39.9 bits (93), Expect = 6e-04
Identities = 33/152 (21%), Positives = 52/152 (34%), Gaps = 5/152 (3%)
Query: 66 ISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAG 125
+SS+ +DS +Y C V + V A P V + S + +
Sbjct: 82 LSSLTSDDSAVYYCVREGEVPYWGQGTTVTVSSAKTTPPSVYPLAPGSAA---QTNSMVT 138
Query: 126 VQCLVTKGDP-PLTISWLKNGLPILSDAEITIRSSGEYT-SSLSIATLSTGHSGNYTCVA 183
+ CLV P P+T++W L + S YT SS S S TC
Sbjct: 139 LGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSPRPSETVTCNV 198
Query: 184 SNTVASDNHSSNLRVNEYTSSLSIATLSTGHS 215
++ +S + + I T+ S
Sbjct: 199 AHPASSTKVDKKIVPRDCGCKPCICTVPEVSS 230
Score = 35.3 bits (81), Expect = 0.023
Identities = 35/210 (16%), Positives = 63/210 (30%), Gaps = 36/210 (17%)
Query: 1 SHPQLIYKFIQQTLQPGPPVSLKCIATG-NPTP-HISWKLDG-------YP--LAGDRFV 49
+ P + Q V+L C+ G P P ++W +P L D +
Sbjct: 118 TPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYT 177
Query: 50 MGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLV 109
+ S V + S S C + S + D +P +
Sbjct: 178 L----------SSSVTVPSSPR-PSETVTCNVAHPASSTKVDKKIVPRDCGCKPCICTVP 226
Query: 110 TSNSRSI-------KVHSGDRAGVQCLV---TKGDPPLTISWLKNGLPILSDAEITIRSS 159
+S I + V C+V +K DP + SW + + + +
Sbjct: 227 EVSSVFIFPPKPKDTLLITVTPKVTCVVVDISKDDPEVQFSWFVDNVEVHTAQTQPREEQ 286
Query: 160 GEYT----SSLSIATLSTGHSGNYTCVASN 185
T S+L I + + C ++
Sbjct: 287 FNSTFRVVSALPIMHQDWLNGKEFKCRVNS 316
>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune
system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
b.1.1.2
Length = 344
Score = 39.8 bits (93), Expect = 6e-04
Identities = 46/225 (20%), Positives = 84/225 (37%), Gaps = 29/225 (12%)
Query: 66 ISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAG 125
+SS+R ED+ +Y CT + + + V A + V + +S+S SG A
Sbjct: 83 LSSLRSEDTAVYFCTRSLNMAYWGQGTLVTVSSASTKGPSVFPLAPSSKS---TSGGTAA 139
Query: 126 VQCLVTKGDP-PLTISWLKNGLPILSDAEIT----IRSSGEYT-SSLSIATLSTGHSGNY 179
+ CLV P P+T+SW L+ T ++SSG Y+ SS+ S+ + Y
Sbjct: 140 LGCLVKDYFPEPVTVSWNSGA---LTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTY 196
Query: 180 TCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNV 239
C VN S+ + S + T + +
Sbjct: 197 IC---------------NVNHKPSNTKVDKKVEPKSCDKTHTCPPCGGGSSGGGSGGQPR 241
Query: 240 PPHIGPFT-FGELMEGVRTQVACVVQS-GDLPLSLQWYKNGLAIS 282
P + + + + + C+V+ ++++W NG +
Sbjct: 242 EPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPEN 286
>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon,
CD3-delta, UCHT1-SCFV, immunoglobulin fold,
antibody-antigen complex; 1.90A {Homo sapiens} SCOP:
b.1.1.4
Length = 105
Score = 37.5 bits (86), Expect = 7e-04
Identities = 17/72 (23%), Positives = 23/72 (31%), Gaps = 6/72 (8%)
Query: 120 SGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTG-HSGN 178
SG + C P I W N I + ++ G LS+ S SG
Sbjct: 20 SGTTVILTC---PQYPGSEILWQHNDKNI--GGDEDDKNIGSDEDHLSLKEFSELEQSGY 74
Query: 179 YTCVASNTVASD 190
Y C + D
Sbjct: 75 YVCYPRGSKPED 86
Score = 36.3 bits (83), Expect = 0.002
Identities = 17/81 (20%), Positives = 26/81 (32%), Gaps = 9/81 (11%)
Query: 17 GPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGI 76
G V L C P I W+ + + GD + + +E SG
Sbjct: 21 GTTVILTCPQ--YPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFS----ELEQSGY 74
Query: 77 YQCTATNRVGSQTHSADMRVY 97
Y C S+ A+ +Y
Sbjct: 75 YVCYPRG---SKPEDANFYLY 92
Score = 27.1 bits (59), Expect = 3.0
Identities = 13/57 (22%), Positives = 17/57 (29%), Gaps = 2/57 (3%)
Query: 185 NTVASDNHSSNLRVNEYTSSLSIATLSTG-HSGNYTCVASNTVASD-NHSSNLRVNV 239
N + + LS+ S SG Y C + D N LR V
Sbjct: 41 NDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDANFYLYLRARV 97
>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC
complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A
{Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A*
3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A*
3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A*
2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...
Length = 207
Score = 38.7 bits (90), Expect = 9e-04
Identities = 31/190 (16%), Positives = 62/190 (32%), Gaps = 25/190 (13%)
Query: 11 QQTLQPGPPVSLKCIATG----NPTPHISWKLDGYPLAG------DRFVMGQYMSLHGDV 60
+ TL + C+ +P +W +DG + + Y V
Sbjct: 12 KDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYR-----V 66
Query: 61 ISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHS 120
+S + + + Y+C +N+ + + V + S +
Sbjct: 67 VSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPP---SRDELT 123
Query: 121 GDRAGVQCLVTKGDPP-LTISWLKNGLPILSDA--EITIRSSGEY--TSSLSIATLSTGH 175
++ + CLV P + + W NG P + + S G + S L++ S
Sbjct: 124 KNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTV-DKSRWQ 182
Query: 176 SGN-YTCVAS 184
GN ++C
Sbjct: 183 QGNVFSCSVM 192
Score = 27.2 bits (60), Expect = 5.6
Identities = 14/73 (19%), Positives = 26/73 (35%), Gaps = 7/73 (9%)
Query: 120 SGDRAGVQCLVTK---GDPPLTISWLKNGLPILSDAEITI--RSSGEY--TSSLSIATLS 172
V C+V DP + +W +G+ + + + + Y S L++
Sbjct: 17 ISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQD 76
Query: 173 TGHSGNYTCVASN 185
+ Y C SN
Sbjct: 77 WLNGKEYKCKVSN 89
>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D,
mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo
sapiens}
Length = 253
Score = 39.1 bits (91), Expect = 9e-04
Identities = 27/196 (13%), Positives = 57/196 (29%), Gaps = 29/196 (14%)
Query: 15 QPGPPVSLKCIATGNPTPHISW---------KLDGYPLAGDRF----VMGQYMSLHGDVI 61
G V+L+CI + P +SW + + + G
Sbjct: 14 PRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTD 73
Query: 62 SHVNISSVRVEDSGIYQCTATNRVGSQTHSA------DMRVYDAPGQPQDVKLVTSNSRS 115
+ + + + CT++ + T + V + ++
Sbjct: 74 TELRLQVANMSQGRTLYCTSSADHWTNTGQLYFGEGSKLTVLEDLKNVFPPEVAVFEPSE 133
Query: 116 IKVHSGDRAGVQCLVTKGDP-PLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTG 174
++ +A + CL T P + +SW NG + SG T +
Sbjct: 134 AEISHTQKATLVCLATGFYPDHVELSWWVNGKEV---------HSGVSTDPQPLKEQPAL 184
Query: 175 HSGNYTCVASNTVASD 190
+ Y + V++
Sbjct: 185 NDSRYALSSRLRVSAT 200
>2aw2_A B and T lymphocyte attenuator; IGI domain, IGG domain, TNFRSF,
protein-protein complex, IMM system; HET: NAG FUL; 2.80A
{Homo sapiens} SCOP: b.1.1.1
Length = 120
Score = 37.1 bits (85), Expect = 0.001
Identities = 25/102 (24%), Positives = 42/102 (41%), Gaps = 7/102 (6%)
Query: 6 IYKFIQQTLQPGPPVSLKC-IATGNPTPHISW-KLDGYP--LAGDRFVMGQYMSLHGDVI 61
I + + ++ G P L+C + PH++W KL+G DR + I
Sbjct: 15 IKRQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFI 74
Query: 62 SHVNISSVRVEDSGIYQCTATNRVGS-QTHSADMRVYDAPGQ 102
H V D+G Y+C+A + ++HS + V D
Sbjct: 75 LH--FEPVLPNDNGSYRCSANFQSNLIESHSTTLYVTDVKHH 114
Score = 30.6 bits (68), Expect = 0.25
Identities = 18/105 (17%), Positives = 35/105 (33%), Gaps = 5/105 (4%)
Query: 105 DVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLK----NGLPILSDAEITIRSSG 160
DV+L + +GD ++C V ++W K + +
Sbjct: 10 DVQLYIKRQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKN 69
Query: 161 EYTSSLSIATLSTGHSGNYTCVASNTVAS-DNHSSNLRVNEYTSS 204
L + +G+Y C A+ ++HS+ L V +
Sbjct: 70 ISFFILHFEPVLPNDNGSYRCSANFQSNLIESHSTTLYVTDVKHH 114
>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody,
immune system; NMR {Homo sapiens}
Length = 512
Score = 38.8 bits (90), Expect = 0.001
Identities = 32/255 (12%), Positives = 57/255 (22%), Gaps = 43/255 (16%)
Query: 66 ISSVRVEDSGIYQCTATNRVGSQTHSADMRVY------------DAPGQPQDVKLVTSNS 113
+ S+ D+ +Y C A + + + S
Sbjct: 84 LRSMSAADTAMYYC-ARGNPPPYYDIGTGSDDGIDVWGQGTTVHVSSAPTKAPDVFPIIS 142
Query: 114 RSIKVHSGDRAGVQCLVTKGDP-PLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATL- 171
+ CL+T P +T++W I+ Y + S +
Sbjct: 143 GCRHPKDNSPVVLACLITGYHPTSVTVTWYMGTQSQPQRTFPEIQRRDSYYMTSSQLSTP 202
Query: 172 -STGHSGNYTCVASNTVASDN--------------------HSSNLRVNEYTSSLSIATL 210
G Y CV +T + ++ T
Sbjct: 203 LQQWRQGEYKCVVQHTASKSKKEIFRWPESPKAQASSVPTAQPQAEGSLAKATTAPATTR 262
Query: 211 STGHSGNYTCVASNTVASDNHSSNLRVNVPPHIGPFTF------GELMEGVRTQVACVVQ 264
+TG G + + + +L + C V
Sbjct: 263 NTGRGGEEKKKEKEKEEQEERETKTPECPSHTQPLGVYLLTPAVQDLWLRDKATFTCFVV 322
Query: 265 SGDLP-LSLQWYKNG 278
DL L W G
Sbjct: 323 GSDLKDAHLTWEVAG 337
>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation
marker blast-1, BCM1 surface antigen, leukocyte antigen
MEM-102, TCT.1; NMR {Homo sapiens}
Length = 121
Score = 36.8 bits (85), Expect = 0.001
Identities = 11/40 (27%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 66 ISSVRVEDSGIYQCTATNRVG-SQTHSADMRVYDAPGQPQ 104
IS V+ ED+ Y + G Q ++V D +P
Sbjct: 77 ISKVQKEDNSTYIMRVLKKTGNEQEWKIKLQVLDPVPKPV 116
Score = 34.5 bits (79), Expect = 0.009
Identities = 14/134 (10%), Positives = 32/134 (23%), Gaps = 29/134 (21%)
Query: 109 VTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSI 168
+ + V SG + + + ++W I
Sbjct: 7 GQGHLVHMTVVSGSNVTLNISESLPENYKQLTWFYT-------------------FDQKI 47
Query: 169 ATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTC-VASNTVA 227
+ + +R++ + +L I+ + + Y V T
Sbjct: 48 VEWDSR---------KSKYFESKFKGRVRLDPQSGALYISKVQKEDNSTYIMRVLKKTGN 98
Query: 228 SDNHSSNLRVNVPP 241
L+V P
Sbjct: 99 EQEWKIKLQVLDPV 112
>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A
{Mus musculus}
Length = 270
Score = 38.1 bits (88), Expect = 0.002
Identities = 26/143 (18%), Positives = 46/143 (32%), Gaps = 16/143 (11%)
Query: 65 NISSVRVEDSGIYQCTATNRVGSQT----HSADMRVYDAPGQPQDVKLVTSNSRSIKVHS 120
I S DS +Y C ++ T + V + ++ ++
Sbjct: 104 EIQSSEAGDSALYLCASSLNWSQDTQYFGPGTRLLVLEDLKNVFPPEVAVFEPSEAEISH 163
Query: 121 GDRAGVQCLVTKGDPP-LTISWLKNGLPILSDAEITIRSSGEY----------TSSLSI- 168
+A + CL T P + +SW NG + S + E +S L +
Sbjct: 164 TQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVS 223
Query: 169 ATLSTGHSGNYTCVASNTVASDN 191
AT ++ C S+N
Sbjct: 224 ATFWQNPRNHFRCQVQFYGLSEN 246
>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus
musculus} PDB: 2qhr_L 3ffd_B 4dcq_A
Length = 218
Score = 37.7 bits (88), Expect = 0.002
Identities = 28/130 (21%), Positives = 53/130 (40%), Gaps = 15/130 (11%)
Query: 66 ISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDA------PGQPQDVKLVTSNSRSIKVH 119
IS+++ ED IY C G + V+ GQP+ +T S +
Sbjct: 79 ISNIQPEDEAIYICGV----GDTIKEQFVYVFGGGTKVTVLGQPKSTPTLTVFPPSSEEL 134
Query: 120 SGDRAGVQCLVTKGDP-PLTISWLKNGLPILSDAE--ITIRSSGEYT--SSLSIATLSTG 174
++A + CL++ P +T++W NG PI + + ++ S L + +
Sbjct: 135 KENKATLVCLISNFSPSGVTVAWKANGTPITQGVDTSNPTKEGNKFMASSFLHLTSDQWR 194
Query: 175 HSGNYTCVAS 184
++TC +
Sbjct: 195 SHNSFTCQVT 204
>3rgv_A YAE62 TCR A chain; TCR, MHC, MHC class I, immune system; 2.90A {Mus
musculus} PDB: 3c60_A
Length = 200
Score = 36.9 bits (85), Expect = 0.003
Identities = 35/194 (18%), Positives = 66/194 (34%), Gaps = 37/194 (19%)
Query: 11 QQTLQPGPPVSLKCIATGNPTPHISWKLDGY---PLAGDRFVMGQYMSLHGDVI------ 61
Q TL + + C + P + W Y G + ++ + +
Sbjct: 9 QVTLSENDFLFINCTYSTTGYPTLFW----YVQYSGEGPQLLLQVTTANNKGSSRGFEAT 64
Query: 62 -------SHVNISSVRVEDSGIYQCTATNRV----GSQTHSADMRVYDAPGQPQDVKLVT 110
H+ +SV+ DS +Y C A + G+ T + P P +L
Sbjct: 65 YDKGTTSFHLQKTSVQEIDSAVYYCAANSGTYQRFGTGTKLQVVPNIQNP-DPAVYQLRD 123
Query: 111 SNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIAT 170
S S V CL T D +S K+ ++D + S ++ S+ ++A
Sbjct: 124 SKSSDKSV---------CLFTDFDSQTNVSQSKDSDVYITDKCVLDMRSMDFKSNSAVAW 174
Query: 171 LSTGHSGNYTCVAS 184
+ ++ C +
Sbjct: 175 SN---KSDFACANA 185
>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus
musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A
1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B
2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B*
2aq3_A 3mc0_A 3byt_A 3bzd_A ...
Length = 238
Score = 37.2 bits (86), Expect = 0.003
Identities = 34/202 (16%), Positives = 58/202 (28%), Gaps = 32/202 (15%)
Query: 12 QTLQPGPPVSLKCIATGNPTPHISW---------KLDGYPLAGDRFVMGQYM-----SLH 57
+ G V+L C T N ++ W +L Y G S
Sbjct: 9 KVAVTGGKVTLSCQQTNN-HNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRP 67
Query: 58 GDVISHVNISSVRVEDSGIYQCTATNRVGSQTHSAD-------MRVYDAPGQPQDVKLVT 110
+ + + +Y C + GS + P V L
Sbjct: 68 SQEQFSLILELATPSQTSVYFCASGGGRGSYAEQFFGPGTRLTVLEDLRQVTPPKVSLFE 127
Query: 111 SNSRSIKVHSGDRAGVQCLVTKGDP-PLTISWLKNGLPILSDAEITIRSSGEY------T 163
+ I + +A + CL P + +SW NG + S ++ E +
Sbjct: 128 PSKAEIA--NKQKATLVCLARGFFPDHVELSWWVNGKEVHSGVSTDPQAYKESNYSYCLS 185
Query: 164 SSLSI-ATLSTGHSGNYTCVAS 184
S L + AT ++ C
Sbjct: 186 SRLRVSATFWHNPRNHFRCQVQ 207
>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system;
3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Length = 242
Score = 37.3 bits (87), Expect = 0.003
Identities = 20/140 (14%), Positives = 41/140 (29%), Gaps = 23/140 (16%)
Query: 66 ISSVRVEDSGIYQCTATNRVGSQTHSAD-----------MRVYDAPGQPQDVKLVTSNSR 114
I +V +D Y C + DA P+ + S +
Sbjct: 84 IHNVEKQDIATYYCALWEAQQELGKKIKVFGPGTKLIITDKQLDADVSPKPTIFLPSIAE 143
Query: 115 SIKVHSGDRAGVQCLVTKGDP-PLTISWLKNGLPILSDAE--ITIRSSGEYTSSLSIATL 171
+ CL+ K P + I W + + ++ T++++ Y S T+
Sbjct: 144 T---KLQKAGTYLCLLEKFFPDVIKIHWEEKKSNTILGSQEGNTMKTNDTYMKF-SWLTV 199
Query: 172 STGHSGN-YTCV----ASNT 186
+ C+ +
Sbjct: 200 PEKSLDKEHRCIVRHENNKN 219
>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 112
Score = 35.3 bits (81), Expect = 0.004
Identities = 14/96 (14%), Positives = 28/96 (29%), Gaps = 11/96 (11%)
Query: 12 QTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVN------ 65
+ G + +W L+G L + I
Sbjct: 18 VQVYDGEDAVFSLDLSTIIQG--TWFLNGEELKSNEPEGQVEPGALRYRIEQKGLQHRLI 75
Query: 66 ISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPG 101
+ +V+ +DSG + V SA + + ++ G
Sbjct: 76 LHAVKHQDSGALVGFSCPGVQD---SAALTIQESSG 108
>1xau_A B- and T-lymphocyte attenuator; IG domain, beta sandwich,
structural genomics, PSI, protein structure initiative;
1.80A {Mus musculus} SCOP: b.1.1.4
Length = 122
Score = 35.6 bits (81), Expect = 0.004
Identities = 16/102 (15%), Positives = 38/102 (37%), Gaps = 6/102 (5%)
Query: 6 IYKFIQQTLQPGPPVSLKC-IATGNPTPHISW-KLDG---YPLAGDRFVMGQYMSLHGDV 60
I + + + G ++C + P+++W K +G PL + +
Sbjct: 18 IKRNSKHSAWTGELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQLYTSWEENRSVP 77
Query: 61 ISHVNISSVRVEDSGIYQCTATNRVG-SQTHSADMRVYDAPG 101
+ ++ + + D+G Y C+ +HS + V +
Sbjct: 78 VFVLHFKPIHLSDNGSYSCSTNFNSQVINSHSVTIHVRERSQ 119
Score = 33.7 bits (76), Expect = 0.018
Identities = 17/110 (15%), Positives = 41/110 (37%), Gaps = 8/110 (7%)
Query: 105 DVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLK----NGLPILSDAEITIRSSG 160
+V+L + +G+ ++C V ++W K +P+ ++
Sbjct: 13 EVQLNIKRNSKHSAWTGELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQLYTSWEE 72
Query: 161 EYTSS---LSIATLSTGHSGNYTCVASNTVA-SDNHSSNLRVNEYTSSLS 206
+ L + +G+Y+C + ++HS + V E + + S
Sbjct: 73 NRSVPVFVLHFKPIHLSDNGSYSCSTNFNSQVINSHSVTIHVRERSQNSS 122
>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold,
diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A
Length = 238
Score = 36.7 bits (85), Expect = 0.005
Identities = 36/214 (16%), Positives = 62/214 (28%), Gaps = 41/214 (19%)
Query: 12 QTLQPGPPVSLKCIATGNPTPHISW---------KLDGYPLAG-----DRFVMGQYMSLH 57
+ G V+L C T N ++ W +L Y G S
Sbjct: 10 KVAVTGGKVTLSCNQTNN-HNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRP 68
Query: 58 GDVISHVNISSVRVEDSGIYQCTATNRVGS-----------QTHSADMRVYDAPGQPQDV 106
+ + + +Y C + + + + +D
Sbjct: 69 SQENFSLILELATPSQTSVYFCASGDLGQTNERLFFGHGTKLSVLGSADDAKKDAAKKDG 128
Query: 107 KLVTSNSRSIKVHSGDRAGVQCLVTK-------------GDPPLTISWLKNGLPILSDAE 153
++ S +S+ V G+ A + C G+ P + + + D
Sbjct: 129 QVRQS-PQSLTVWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGR 187
Query: 154 ITIRSSG-EYTSSLSIATLSTGHSGNYTCVASNT 186
TI + E SL IA G S Y C A +T
Sbjct: 188 FTIFFNKREKKLSLHIADSQPGDSATYFCAAIDT 221
>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG,
immune system; 2.94A {Cricetulus migratorius} PDB:
3mj9_L*
Length = 213
Score = 36.6 bits (85), Expect = 0.005
Identities = 24/125 (19%), Positives = 45/125 (36%), Gaps = 5/125 (4%)
Query: 66 ISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAG 125
IS + D Y C + + S GQP VT S + ++A
Sbjct: 74 ISKAQAGDEADYYCQSWDGTNSAWVFGSGTKVTVLGQPNAAPSVTLFPPSSEELKTNQAT 133
Query: 126 VQCLVTKGDP-PLTISWLKNGLPILSDAEITIRSSGEYT----SSLSIATLSTGHSGNYT 180
+ C++ P + ++W +G PI + T S + S L++ + +
Sbjct: 134 LVCMINGFYPADVAVTWEADGTPITQGVKTTQPSKSDSKYMATSYLTMTADAWKSRNTFI 193
Query: 181 CVASN 185
C ++
Sbjct: 194 CKVTH 198
>1oga_D T-cell receptor alpha chain V region, beta-2-microglobulin; immune
system/receptor, immune system/receptor/complex, TCR,
MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.2 PDB: 2xna_A 2xn9_A 2vlm_D 2vlk_D
2vlj_D 2vlr_D 2cdf_A 2wbj_C* 3qdm_D 3qeq_D
Length = 215
Score = 36.1 bits (83), Expect = 0.006
Identities = 23/124 (18%), Positives = 46/124 (37%), Gaps = 16/124 (12%)
Query: 62 SHVNISSVRVEDSGIYQCTATNRVGSQT----HSADMRVYDAPGQPQDVKLVTSNSRSIK 117
S ++I++ + D+G+Y C G+ ++ P +L S S
Sbjct: 72 SSLHITAAQPGDTGLYLCAGAGSQGNLIFGKGTKLSVKPNIQNPDPAVYQLRDSKSSDKS 131
Query: 118 VHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSG 177
V CL T D +S K+ ++D + S ++ S+ ++A +
Sbjct: 132 V---------CLFTDFDSQTNVSQSKDSDVYITDKTVLDMRSMDFKSNSAVAWSNKSD-- 180
Query: 178 NYTC 181
+ C
Sbjct: 181 -FAC 183
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI
domain, IG-like domain, extracellular receptor,
neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4
b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Length = 663
Score = 37.1 bits (84), Expect = 0.007
Identities = 21/123 (17%), Positives = 41/123 (33%), Gaps = 11/123 (8%)
Query: 2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPL--AGDRFVMGQYMSLHGD 59
+ + Q + G LKC N + WK L ++ + +L
Sbjct: 533 PDKSKGSYRQHFFKHGGTAELKCSQKSNL-ARVFWKFQNGVLKAESPKYGLMGRKNLL-- 589
Query: 60 VISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVH 119
I ++ DSG+YQC + RV ++T + + + +V ++
Sbjct: 590 ------IFNLSEGDSGVYQCLSEERVKNKTVFQVVAKHVLEVKVVPKPVVAPTLSVVQTE 643
Query: 120 SGD 122
Sbjct: 644 GSR 646
Score = 30.1 bits (66), Expect = 1.1
Identities = 10/49 (20%), Positives = 18/49 (36%), Gaps = 3/49 (6%)
Query: 135 PPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVA 183
+ W + +++ +L I LS G SG Y C++
Sbjct: 560 NLARVFWKFQNGVLKAESPKYGLMG---RKNLLIFNLSEGDSGVYQCLS 605
Score = 28.2 bits (61), Expect = 3.8
Identities = 15/42 (35%), Positives = 18/42 (42%), Gaps = 5/42 (11%)
Query: 205 LSIATLSTGHSGNYTCVA-----SNTVASDNHSSNLRVNVPP 241
L I LS G SG Y C++ + TV L V V P
Sbjct: 588 LLIFNLSEGDSGVYQCLSEERVKNKTVFQVVAKHVLEVKVVP 629
>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain,
human constant...; natural killer T cell receptor,
immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B
4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B
3qjh_B 3qiw_D* 3qiu_D
Length = 245
Score = 36.2 bits (83), Expect = 0.007
Identities = 23/137 (16%), Positives = 42/137 (30%), Gaps = 18/137 (13%)
Query: 65 NISSVRVEDSGIYQCTATNRVGS----QTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHS 120
I +EDS +Y C ++ + V + ++ ++
Sbjct: 79 KIQPTALEDSAVYFCASSFWGAYAEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISH 138
Query: 121 GDRAGVQCLVTKGDP-PLTISWLKNGLPILSDA--------EITIRSSGEYTSSLSIATL 171
+A + CL T P + +SW NG + S E + Y S S +
Sbjct: 139 TQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALS-SRLRV 197
Query: 172 S----TGHSGNYTCVAS 184
S ++ C
Sbjct: 198 SATFWQNPRNHFRCQVQ 214
>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor,
immune system/receptor/complex, TCR, MHC,
immunodominance, FLU, complex; 1.40A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E
2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D*
3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E
3kxf_E 2cde_B ...
Length = 252
Score = 36.1 bits (83), Expect = 0.007
Identities = 39/232 (16%), Positives = 70/232 (30%), Gaps = 45/232 (19%)
Query: 12 QTLQPGPPVSLKCIATGNPTPHISW---------KLDGYPLAGDRFVMGQY-----MSLH 57
+ G V+L C N + W +L Y + F G +S
Sbjct: 13 LFRKEGQNVTLSCEQNLN-HDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSRE 71
Query: 58 GDVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIK 117
+ ++S + + Y C + + + Y PG V N +
Sbjct: 72 KKESFPLTVTSAQKNPTAFYLC-------ASSSRSSYEQYFGPGTRLTVTEDLKNVFPPE 124
Query: 118 V----------HSGDRAGVQCLVTKGDP-PLTISWLKNGLPILSDAEITIRSSGEY---- 162
V +A + CL T P + +SW NG + S + E
Sbjct: 125 VAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALN 184
Query: 163 ------TSSLSI-ATLSTGHSGNYTCVAS-NTVASDNHSSNLRVNEYTSSLS 206
+S L + AT ++ C ++ ++ + R T +S
Sbjct: 185 DSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLSENDEWTQDRAKPVTQIVS 236
>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin
fold, immune surveillance of cell stress PROT A/B,
MIC-A/B binding, epithelium; 3.04A {Homo sapiens}
Length = 259
Score = 36.0 bits (83), Expect = 0.010
Identities = 30/223 (13%), Positives = 60/223 (26%), Gaps = 47/223 (21%)
Query: 13 TLQPGPPVSLKCIATGNPTPHISW----------------KLDGYPLAGDRFVMGQYMSL 56
Q G + C T +I W + G+Y +
Sbjct: 13 IRQTGSSAEITCDLAEGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDTY 72
Query: 57 HGDVIS-HVNISSVRVEDSGIYQC-------------TATNRVGSQTHSADMRVYDAPGQ 102
+ + + ++ DSG+Y C + T+ V + + +
Sbjct: 73 GSTRKNLRMILRNLIENDSGVYYCATWDQNYYKKLFGSGTSLVVTDKQGSADDAKKDAAK 132
Query: 103 PQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLK---NGLPIL---------- 149
+ VT S+ + + CL I W K + I
Sbjct: 133 KDGAQKVTQAQSSVSMPVRKAVTLNCLYETSWWSYYIFWYKRLPSKEMIFLIRQGSDEQN 192
Query: 150 ---SDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVASNTVAS 189
+ + + + +L+I+ L S Y C ++
Sbjct: 193 AKSGRYSVNFKKAA-KSVALTISALQLEDSAKYFCALGESLTR 234
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.9 bits (79), Expect = 0.010
Identities = 9/39 (23%), Positives = 17/39 (43%), Gaps = 13/39 (33%)
Query: 102 QPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTIS 140
+ Q +K + + S+K+++ D A P L I
Sbjct: 18 EKQALKKLQA---SLKLYADDSA----------PALAIK 43
>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1
neutralizing antibody, GP120, immune system; HET: PCA
MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L*
2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A*
1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A
1mcl_A* 1mcn_A* 1mcq_A 1mcr_A ...
Length = 211
Score = 35.5 bits (82), Expect = 0.012
Identities = 26/126 (20%), Positives = 54/126 (42%), Gaps = 7/126 (5%)
Query: 66 ISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAG 125
+S ++ +D +Y C + ++ GQP+ VT S + ++A
Sbjct: 72 VSGLQTDDEAVYYCGSLVGNWDVIFGGGTKL-TVLGQPKAAPSVTLFPPSSEELQANKAT 130
Query: 126 VQCLVTKGDP-PLTISWLKNGLPILSDAEITIRSS---GEY--TSSLSIATLSTGHSGNY 179
+ CL++ P +T++W + P+ + E T S +Y +S LS+ +Y
Sbjct: 131 LVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSY 190
Query: 180 TCVASN 185
+C ++
Sbjct: 191 SCQVTH 196
>3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein
complex, enzyme- inhibitor complex, disease mutation,
glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E
Length = 257
Score = 35.6 bits (83), Expect = 0.012
Identities = 41/148 (27%), Positives = 55/148 (37%), Gaps = 37/148 (25%)
Query: 66 ISSVRVEDSGIYQCTATNRVGSQTHSADMRVY-DAPGQPQDVKLVTSNSRSIK------- 117
+SS+R ED+ +Y C Q D GQ +VT +S S K
Sbjct: 83 MSSLRAEDTAVYYCARPYLTYPQRRGPQNVSPFDNWGQGT---MVTVSSASTKGPSVFPL 139
Query: 118 -----VHSGDRAGVQCLVTKGDP-PLTISWLKNGLP--------ILSDAEITIRSSGEYT 163
SG A + CLV P P+T+SW L +L SSG Y+
Sbjct: 140 APSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQ-------SSGLYS 192
Query: 164 -SSLSIATLSTGHSGNYTCV----ASNT 186
SS+ S+ + Y C SNT
Sbjct: 193 LSSVVTVPSSSLGTQTYICNVNHKPSNT 220
>2bnu_A TCR alpha chain, T-cell receptor alpha chain C region; superagonist
peptide T-cell vaccines, transmembrane, immunoglobulin
domain; 1.40A {Homo sapiens} PDB: 2bnq_D 2bnr_D 2f54_D
2pyf_A* 2pye_D* 2f53_D 2p5e_D* 2p5w_D* 3mv7_D 3mv8_D
3mv9_D 3utt_D 2cdg_A
Length = 203
Score = 35.3 bits (81), Expect = 0.013
Identities = 32/188 (17%), Positives = 61/188 (32%), Gaps = 31/188 (16%)
Query: 13 TLQPGPPVSLKCIATGNPTPHISW----------KLDGYPLAGDRFVMGQYMSLHG--DV 60
++ G + L C T + ++ W L + G+ +
Sbjct: 11 SVPEGENLVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSSG 70
Query: 61 ISHVNISSVRVEDSGIYQCTATNRVGS-------QTHSADMRVYDAPGQPQDVKLVTSNS 113
S + I++ + DS Y C G + S + Y P +L S S
Sbjct: 71 RSTLYIAASQPGDSATYLCAVRPTSGGSYIPTFGRGTSLIVHPYIQNPDPAVYQLRRSKS 130
Query: 114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLST 173
V CL T D +S K+ ++D + S ++ S+ ++A +
Sbjct: 131 SDKSV---------CLFTDFDSQTNVSQSKDSDVYITDKCVLDMRSMDFKSNSAVAWSN- 180
Query: 174 GHSGNYTC 181
++ C
Sbjct: 181 --KSDFAC 186
>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune
system, antibody, ENA11His antibody, immunoglobulin
domain; 2.75A {Mus musculus}
Length = 254
Score = 35.5 bits (82), Expect = 0.014
Identities = 24/133 (18%), Positives = 44/133 (33%), Gaps = 22/133 (16%)
Query: 66 ISSVRVEDSGIYQCTATNRV------GSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVH 119
IS V ED GIY C + G++ + V+ S +
Sbjct: 117 ISRVEAEDLGIYYCVQGSHFPPTFGAGTKLE---------LKRADAAPTVSIFPPSSEQL 167
Query: 120 SGDRAGVQCLVTKGDP-PLTISWLKNGLPILSDAEITIRSSGEY------TSSLSIATLS 172
+ A V C + P + + W +G + + +S+L++
Sbjct: 168 TSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDE 227
Query: 173 TGHSGNYTCVASN 185
+YTC A++
Sbjct: 228 YERHNSYTCEATH 240
>3gsn_A RA14 TCR alpha chain (TRAV24, TRAJ49); HLA, human cytomegalovirus,
PP65, T cell receptor (TCR), immune response, public
response; 2.80A {Homo sapiens}
Length = 199
Score = 34.5 bits (79), Expect = 0.020
Identities = 34/194 (17%), Positives = 57/194 (29%), Gaps = 45/194 (23%)
Query: 12 QTLQPGPPVSLKCIATGNPTPHISW---------------KLDGYPLAGDRFVM-----G 51
+Q G + C + + W L+G R
Sbjct: 10 LHVQEGDSTNFTCSFPSSNFYALHWYRWETAKSPEALFVMTLNGDEKKKGRISATLNTKE 69
Query: 52 QYMSLHGDVISHVNISSVRVEDSGIYQCTATNRV----GSQTHSADMRVYDAPGQPQDVK 107
Y L+ I + EDS Y C G+ T + P P +
Sbjct: 70 GYSYLY--------IKGSQPEDSATYLCARNTGNQFYFGTGTSLTVIPNIQNP-DPAVYQ 120
Query: 108 LVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLS 167
L S S V CL T D +S K+ ++D + S ++ S+ +
Sbjct: 121 LRDSKSSDKSV---------CLFTDFDSQTNVSQSKDSDAYITDKTVLDMRSMDFKSNSA 171
Query: 168 IATLSTGHSGNYTC 181
+A + ++ C
Sbjct: 172 VAWSN---KSDFAC 182
>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune
system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1
b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L
2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L*
1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L*
1mfb_L* ...
Length = 212
Score = 34.6 bits (80), Expect = 0.022
Identities = 31/132 (23%), Positives = 56/132 (42%), Gaps = 20/132 (15%)
Query: 66 ISSVRVEDSGIYQCTATNRVGSQTHSADMRVY------DAPGQPQDVKLVTSNSRSIKVH 119
I+ + ED IY C S + V+ GQP+ VT S +
Sbjct: 77 ITGAQTEDEAIYFC--------ALWSNNKLVFGGGTKLTVLGQPKSSPTVTLFPPSSEEL 128
Query: 120 SGDRAGVQCLVTKGDPP-LTISWLKNGLPILSDAEITI---RSSGEY--TSSLSIATLST 173
S +A + C +T P +T+ W +G P+ + E T +S+ +Y +S L++ +
Sbjct: 129 STAKATLVCTITDFYPGVVTVDWKVDGTPVTAGMETTQPSKQSNNKYMASSYLTLTARAW 188
Query: 174 GHSGNYTCVASN 185
+Y+C ++
Sbjct: 189 ERHSSYSCQVTH 200
>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein
receptor, immunoglobulin V domain fold, symmetric dimer;
1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B
2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B
1p6a_B
Length = 126
Score = 33.3 bits (76), Expect = 0.027
Identities = 16/104 (15%), Positives = 28/104 (26%), Gaps = 24/104 (23%)
Query: 17 GPPVSLKCIATGNPTPH----ISWKLDGYPLAGDRFV-------------MGQYM---SL 56
G L C T +P I W + V
Sbjct: 20 GETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHF 79
Query: 57 HGDVISH----VNISSVRVEDSGIYQCTATNRVGSQTHSADMRV 96
+ + +N++++++ D G YQC G + V
Sbjct: 80 TSNDLKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVV 123
Score = 29.8 bits (67), Expect = 0.37
Identities = 20/116 (17%), Positives = 33/116 (28%), Gaps = 26/116 (22%)
Query: 109 VTSNSRSIKVHSGDRAGVQCLVT---KGDPPLTISWLKNGLPILSDA---------EITI 156
+T+ I+ G+ A + C T + PL I WL + +I
Sbjct: 8 ITTPEEMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYD 67
Query: 157 RSSGEYTS--------------SLSIATLSTGHSGNYTCVASNTVASDNHSSNLRV 198
+ S+++ L G Y C N +L V
Sbjct: 68 DYYPDLKGRVHFTSNDLKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVV 123
Score = 27.9 bits (62), Expect = 1.9
Identities = 9/36 (25%), Positives = 13/36 (36%)
Query: 204 SLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNV 239
S+++ L G Y C N +L V V
Sbjct: 90 SINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVVLV 125
>1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein,
T cell receptor delta, immune system; HET: NAG MAN FUC;
3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2
Length = 230
Score = 34.1 bits (79), Expect = 0.030
Identities = 19/138 (13%), Positives = 42/138 (30%), Gaps = 20/138 (14%)
Query: 66 ISSVRVEDSGIYQCTATNRVGSQ----------THSADMRVYDAPGQPQDVKLVTSNSRS 115
I S+ ED IY C+ + DA P+ + S + +
Sbjct: 83 IYSLEEEDEAIYYCSYGEGSSGFHKVFAEGTKLIVIPSDKRLDADISPKPTIFLPSVAET 142
Query: 116 IKVHSGDRAGVQCLVTKGDP-PLTISWLKNGLPILSDAEI--TIRSSGEYTSSLSIATLS 172
+ CL+ P + + W + + D++ T++++ Y +
Sbjct: 143 ---NLHKTGTYLCLLEAFFPDVIRVYWKEKDGNTILDSQEGDTLKTNDTYMKFSWLTVPE 199
Query: 173 TGHSGNYTCV----ASNT 186
+ C+ +
Sbjct: 200 RAMGKEHRCIVKHENNKG 217
>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex,
immunoglobulin fold, immune receptor, membr immune
system; HET: NAG; 2.55A {Homo sapiens}
Length = 268
Score = 34.3 bits (78), Expect = 0.037
Identities = 27/160 (16%), Positives = 49/160 (30%), Gaps = 25/160 (15%)
Query: 62 SHVNISSVRVEDSGIYQCTATNRVGSQT--HSADMRVYDAPGQPQDVKLVTSNSRSIKVH 119
S + I DS +Y C + +Q + V + ++ ++
Sbjct: 100 STLKIQRTERGDSAVYLCATSALGDTQYFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEIS 159
Query: 120 SGDRAGVQCLVTKGDPP-LTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGN 178
+A + CL T P + +SW NG + SG T + +
Sbjct: 160 HTQKATLVCLATGFYPDHVELSWWVNGKEV---------HSGVCTDPQPLKEQPALNDSR 210
Query: 179 YTCVASNTVASDNHSSNLRVN--EYTSSLSIATLSTGHSG 216
Y+ SS LRV+ + + + G
Sbjct: 211 YSL-----------SSRLRVSATFWQNPRNHFRCQVQFYG 239
>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell
immunoglobulin mucin, signaling protein; 1.95A {Mus
musculus} PDB: 3kaa_A*
Length = 109
Score = 32.6 bits (74), Expect = 0.038
Identities = 15/85 (17%), Positives = 27/85 (31%), Gaps = 18/85 (21%)
Query: 13 TLQPGPPVSLKCIATGNPTP---HISWKLDGYPLAGDRFVMGQY------------MSLH 57
++ G L C T + + W P + + + L
Sbjct: 5 KVEVGKNAYLPCSYTLPTSGTLVPMCWGKGFCPWSQCTNELLRTDERNVTYQKSSRYQLK 64
Query: 58 GDVISH---VNISSVRVEDSGIYQC 79
GD+ + I +V ++D G Y C
Sbjct: 65 GDLNKGDVSLIIKNVTLDDHGTYCC 89
Score = 30.3 bits (68), Expect = 0.23
Identities = 20/127 (15%), Positives = 39/127 (30%), Gaps = 23/127 (18%)
Query: 115 SIKVHSGDRAGVQCLVT--KGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLS 172
KV G A + C T + + W K P +R+ ++
Sbjct: 3 GYKVEVGKNAYLPCSYTLPTSGTLVPMCWGKGFCPWSQCTNELLRTDER--------NVT 54
Query: 173 TGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHS 232
S Y + D + ++ SL I ++ G Y C ++
Sbjct: 55 YQKSSRYQ------LKGDLNKGDV-------SLIIKNVTLDDHGTYCCRIQFPGLMNDKK 101
Query: 233 SNLRVNV 239
L++++
Sbjct: 102 LELKLDI 108
>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral
virus, virus-immune SYST complex; 30.00A {Mus musculus}
SCOP: i.6.1.1
Length = 438
Score = 34.1 bits (79), Expect = 0.045
Identities = 21/132 (15%), Positives = 38/132 (28%), Gaps = 28/132 (21%)
Query: 66 ISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSR---------SI 116
I V +D Y C +N V G + + S
Sbjct: 79 IDPVEADDVATYYCQQSN-----------EVPLTFGAGTKLD-LKRADAAPTVSIFPPSS 126
Query: 117 KVHSGDRAGVQCLVTKGDP-PLTISWLKNGLPILSDAEITI----RSSGEYT--SSLSIA 169
+ + A V C + P + + W +G + + Y+ S+L++
Sbjct: 127 EQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLT 186
Query: 170 TLSTGHSGNYTC 181
+YTC
Sbjct: 187 KDEYERHNSYTC 198
>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine;
HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*
Length = 240
Score = 33.8 bits (77), Expect = 0.045
Identities = 30/185 (16%), Positives = 61/185 (32%), Gaps = 15/185 (8%)
Query: 11 QQTLQPGPPVSLKCIATG----NPTPHISWKLDG-YPLAGDRFVMGQYMSLHGDVISHVN 65
+ TL + C+ +P +W +DG + + V+S +
Sbjct: 33 KDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLT 92
Query: 66 ISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAG 125
+ + Y+C +N+ + + V + S + ++
Sbjct: 93 VLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPP---SRDELTKNQVS 149
Query: 126 VQCLVTKGDPP-LTISWLKNGLPILSDAEIT--IRSSGEY--TSSLSIATLSTGHSGN-Y 179
+ CLV P + + W NG P + + S G + S L++ S GN +
Sbjct: 150 LTCLVKGFYPSDIAVEWESNGQPENNYKATPPVLDSDGSFFLYSKLTVDK-SRWQQGNVF 208
Query: 180 TCVAS 184
+C
Sbjct: 209 SCSVM 213
>1sq2_N Novel antigen receptor; immunoglobulin fold, protein-protein
complex, hydrolase/immune system complex; 1.45A
{Ginglymostoma cirratum} SCOP: b.1.1.1 PDB: 1t6v_N
Length = 113
Score = 32.3 bits (74), Expect = 0.047
Identities = 20/104 (19%), Positives = 32/104 (30%), Gaps = 22/104 (21%)
Query: 13 TLQPGPPVSLKCIATG--NPTPHISW---KLDGYPLA----GDRFVMG-----QYMSLHG 58
T + G +++ C+ W K G R+V + SL
Sbjct: 11 TKETGESLTINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRYVETVNSGSKSFSLR- 69
Query: 59 DVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQ 102
I+ + VED G Y+C G ++ Y G
Sbjct: 70 -------INDLTVEDGGTYRCGLGVAGGYCDYALCSSRYAECGD 106
>1kgc_D T-cell receptor alpha chain; LC13 clone, immune system; 1.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1mi5_D 3kpr_D 3kps_D
3o6f_C 3t0e_C 3pqy_D 2esv_D 3dxa_D 3dx9_A
Length = 206
Score = 33.4 bits (76), Expect = 0.049
Identities = 29/186 (15%), Positives = 62/186 (33%), Gaps = 21/186 (11%)
Query: 13 TLQPGPPVSLKCIA-TGNPTPHISW---------KLDGYPLAGDRFVMGQYMSLHGDV-I 61
PV L C T + T +I W + + L + +++ D
Sbjct: 10 ESNEEEPVHLPCNHSTISGTDYIHWYRQLPSQGPEYVIHGLTSNVNNRMASLAIAEDRKS 69
Query: 62 SHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSN---SRSIKV 118
S + + + D+ +Y C + ++ ++ G V N +
Sbjct: 70 STLILHRATLRDAAVYYCI----LPLAGGTSYGKLTFGQGTILTVHPNIQNPDPAVYQLR 125
Query: 119 HSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGN 178
S CL T D +S K+ ++D + S ++ S+ ++A + +
Sbjct: 126 DSKSSDKSVCLFTDFDSQTNVSQSKDSDVYITDKTVLDMRSMDFKSNSAVAWSN---KSD 182
Query: 179 YTCVAS 184
+ C +
Sbjct: 183 FACANA 188
>2eys_A NKT15; natural killer T cell receptor, immune system; 2.21A {Homo
sapiens} PDB: 2eyr_A 2eyt_A 3huj_E* 3tyf_A 3tzv_A*
3sdx_E* 2po6_C* 2cde_A 3to4_C*
Length = 210
Score = 33.5 bits (76), Expect = 0.056
Identities = 23/127 (18%), Positives = 46/127 (36%), Gaps = 19/127 (14%)
Query: 62 SHVNISSVRVEDSGIYQCTATNRVGSQTH-------SADMRVYDAPGQPQDVKLVTSNSR 114
S ++I++ ++ DS Y C ++R + + P +L S S
Sbjct: 75 SSLHITASQLSDSASYICVVSDRGSTLGRLYFGRGTQLTVWPDIQNPDPAVYQLRDSKSS 134
Query: 115 SIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTG 174
V CL T D +S K+ ++D + S ++ S+ ++A +
Sbjct: 135 DKSV---------CLFTDFDSQTNVSQSKDSDVYITDKCVLDMRSMDFKSNSAVAWSNKS 185
Query: 175 HSGNYTC 181
+ C
Sbjct: 186 D---FAC 189
Score = 26.9 bits (59), Expect = 7.1
Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 3/65 (4%)
Query: 184 SNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHS---SNLRVNVP 240
NT ++ +++ L + SSL I S +Y CV S+ ++ ++ V
Sbjct: 56 ENTKSNGRYTATLDADTKQSSLHITASQLSDSASYICVVSDRGSTLGRLYFGRGTQLTVW 115
Query: 241 PHIGP 245
P I
Sbjct: 116 PDIQN 120
>1hxm_A Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system;
3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Length = 229
Score = 33.4 bits (77), Expect = 0.057
Identities = 28/121 (23%), Positives = 44/121 (36%), Gaps = 13/121 (10%)
Query: 66 ISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHS----G 121
I + D G Y C A + +G D ++ G+ V V S+ S
Sbjct: 79 ILAPSERDEGSYYC-ACDTLGMGGEYTDKLIF---GKGTRVT-VEPRSQPHTKPSVFVMK 133
Query: 122 DRAGVQCLVTKGDP-PLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYT 180
+ V CLV + P + I+ + + D I I SG+Y + S + T
Sbjct: 134 NGTNVACLVKEFYPKDIRINLVSSKKITEFDPAIVISPSGKYNAVKLGKYED---SNSVT 190
Query: 181 C 181
C
Sbjct: 191 C 191
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein
binding; HET: NAG NDG; 2.40A {Homo sapiens}
Length = 590
Score = 33.8 bits (76), Expect = 0.059
Identities = 11/49 (22%), Positives = 14/49 (28%), Gaps = 4/49 (8%)
Query: 135 PPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGNYTCVA 183
T SW S + L I L+ G+Y C A
Sbjct: 527 RHATYSWRHKENVEQSCEPGHQSPNC----ILFIENLTAQQYGHYFCEA 571
Score = 32.3 bits (72), Expect = 0.17
Identities = 12/89 (13%), Positives = 21/89 (23%), Gaps = 10/89 (11%)
Query: 2 HPQLIYKFIQQTLQPGPPVSLKCIATGNPTPHISWKLDGYPL-AGDRFVMGQYMSLHGDV 60
+ +L P L C SW+ + + L
Sbjct: 500 PKPDKAPLQKVSLAPNSRYYLSCPMESRH-ATYSWRHKENVEQSCEPGHQSPNCILF--- 555
Query: 61 ISHVNISSVRVEDSGIYQCTATNRVGSQT 89
I ++ + G Y C A +
Sbjct: 556 -----IENLTAQQYGHYFCEAQEGSYFRE 579
>1tvd_A T cell receptor, ES204 V delta; immunoreceptor, TCR, delta chain,
variable domain; 1.90A {Homo sapiens} SCOP: b.1.1.1
Length = 116
Score = 32.2 bits (74), Expect = 0.060
Identities = 22/91 (24%), Positives = 30/91 (32%), Gaps = 16/91 (17%)
Query: 13 TLQPGPPVSLKCIATGN-PTPHISW-------------KLDGYPLAGDRFVMGQY-MSLH 57
T+ G V L C P + W D G F G++ +
Sbjct: 11 TVASGSEVVLLCTYDTVYSNPDLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKHI 70
Query: 58 GDVIS-HVNISSVRVEDSGIYQCTATNRVGS 87
+ H+ IS VR EDS Y C T +
Sbjct: 71 LTQKAFHLVISPVRTEDSATYYCAFTLPPPT 101
>2ak4_D SB27 T cell receptor alpha chain; bulged epitopes, PMHC/TCR
complex, immune system; 2.50A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.2 PDB: 3kxf_D 3nfj_I 3ffc_D
Length = 211
Score = 32.7 bits (74), Expect = 0.075
Identities = 22/126 (17%), Positives = 44/126 (34%), Gaps = 18/126 (14%)
Query: 62 SHVNISSVRVEDSGIYQCTATNRVGS------QTHSADMRVYDAPGQPQDVKLVTSNSRS 115
+ I++ +V DS +Y C + + + P +L S S
Sbjct: 77 FNFTITASQVVDSAVYFCALSGFYNTDKLIFGTGTRLQVFPNIQNPDPAVYQLRDSKSSD 136
Query: 116 IKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGH 175
V CL T D +S K+ ++D + S ++ S+ ++A +
Sbjct: 137 KSV---------CLFTDFDSQTNVSQSKDSDVYITDKCVLDMRSMDFKSNSAVAWSN--- 184
Query: 176 SGNYTC 181
++ C
Sbjct: 185 KSDFAC 190
>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid
factor IGG1-FC, immunoglobulin C region, membrane,
glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG
GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Length = 234
Score = 32.8 bits (75), Expect = 0.078
Identities = 26/131 (19%), Positives = 47/131 (35%), Gaps = 18/131 (13%)
Query: 66 ISSVRVEDSGIYQCTATNRV------GSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVH 119
IS +R ED Y C + G T + A +
Sbjct: 95 ISGLRSEDEADYYCATWDDSLSAVIFGGGTKLTVLGQPKAAPSVTLFPPSSEEL------ 148
Query: 120 SGDRAGVQCLVTKGDP-PLTISWLKNGLPILSDAEITI--RSSGE---YTSSLSIATLST 173
++A + CL++ P +T++W +G P+ + E T + S +S LS+
Sbjct: 149 QANKATLVCLISDFFPGAVTVAWKADGAPVKAGVETTKPSKQSNNKYAASSYLSLTPEQW 208
Query: 174 GHSGNYTCVAS 184
+Y+C +
Sbjct: 209 KSHRSYSCQVT 219
>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex
(immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A
{Mus musculus} SCOP: b.1.1.1 b.1.1.2
Length = 212
Score = 33.0 bits (76), Expect = 0.078
Identities = 28/133 (21%), Positives = 43/133 (32%), Gaps = 21/133 (15%)
Query: 66 ISSVRVEDSGIYQCTATNRVGSQTHSADMRVY--------DAPGQPQDVKLVTSNSRSIK 117
IS + ED Y C + D P+ VT S +
Sbjct: 73 ISGAQPEDEAAYYC--------LSSYGDNNDLVFGSGTQLTVLRGPKSSPKVTVFPPSPE 124
Query: 118 VHSGDRAGVQCLVTKGDP-PLTISWLKNGLPILSDAEITIRS--SGEY--TSSLSIATLS 172
++A + CLV P T++W NG I + T S Y +S LS+
Sbjct: 125 ELRTNKATLVCLVNDFYPGSATVTWKANGATINDGVKTTKPSKQGQNYMTSSYLSLTADQ 184
Query: 173 TGHSGNYTCVASN 185
+C ++
Sbjct: 185 WKSHNRVSCQVTH 197
>2i24_N NEW antigen receptor PBLA8; immunoglobulin fold, immune system;
1.35A {Ginglymostoma cirratum} PDB: 2i25_N 2i27_N 2i26_N
Length = 121
Score = 31.5 bits (72), Expect = 0.090
Identities = 27/121 (22%), Positives = 44/121 (36%), Gaps = 26/121 (21%)
Query: 13 TLQPGPPVSLKCIATG--NPTPHISW--KLDGYPL-----AGDRFVMG-----QYMSLHG 58
T + G +++ C+ W K G G R+V + SL
Sbjct: 11 TKETGESLTINCVVRDSRCVLSTGYWYRKPPGSRNEESISDGGRYVETVNRGSKSFSLR- 69
Query: 59 DVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKV 118
I+ + V+DSG Y+C +R GS + + D G +VT N+ +
Sbjct: 70 -------INDLTVKDSGTYRCKPESRYGS-YDAVCAALNDQYGGG---TVVTVNAAAHHH 118
Query: 119 H 119
H
Sbjct: 119 H 119
>1ymm_D T cell receptor alpha chain; protein-protein complex, T cell
repertoire, auto-immunity, I system; HET: NAG; 3.50A
{Homo sapiens} SCOP: b.1.1.1
Length = 207
Score = 32.3 bits (73), Expect = 0.12
Identities = 23/123 (18%), Positives = 41/123 (33%), Gaps = 12/123 (9%)
Query: 62 SHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSN---SRSIKV 118
S + I++ R D+ Y C T S + G V N +
Sbjct: 72 SSLLITASRAADTASYFCAT------DTTSGTYKYIFGTGTRLKVLANIQNPDPAVYQLR 125
Query: 119 HSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGN 178
S CL T D +S K+ ++D + S ++ S+ ++A +
Sbjct: 126 DSKSSDKSVCLFTDFDSQTNVSQSKDSDVYITDKTVLDMRSMDFKSNSAVAWSNKSD--- 182
Query: 179 YTC 181
+ C
Sbjct: 183 FAC 185
Score = 28.5 bits (63), Expect = 2.1
Identities = 12/64 (18%), Positives = 21/64 (32%), Gaps = 2/64 (3%)
Query: 184 SNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDN--HSSNLRVNVPP 241
S L ++ +SSL I + +Y C T + + R+ V
Sbjct: 53 EREKHSGRLRVTLDTSKKSSSLLITASRAADTASYFCATDTTSGTYKYIFGTGTRLKVLA 112
Query: 242 HIGP 245
+I
Sbjct: 113 NIQN 116
>3nl4_L Antigen binding fragment, immunoglobulin IGG - LI; FAB, rabbit,
conformation-specific, amyloid, immune system; 1.54A
{Oryctolagus cuniculus}
Length = 213
Score = 32.2 bits (74), Expect = 0.12
Identities = 13/72 (18%), Positives = 28/72 (38%), Gaps = 6/72 (8%)
Query: 120 SGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSS----GEY--TSSLSIATLST 173
+ + C+ K P +T++W +G + E + Y +S+L++ +
Sbjct: 128 ATGTVTIVCVANKYFPDVTVTWEVDGTTQTTGIENSKTPQNSADCTYNLSSTLTLTSTEY 187
Query: 174 GHSGNYTCVASN 185
YTC +
Sbjct: 188 NSHKEYTCKVTQ 199
>4ei6_A Valpha1 XV19 type II natural killer T cell recept variable domain,
human constant...; natural killer T cell receptor,
immune system; 1.60A {Mus musculus} PDB: 4ei5_C 4elk_A
4elm_E* 3qeu_A 1ao7_D 3qdj_D 3qdg_D 3qfj_D 1qsf_D
1qse_D* 3d39_D* 3d3v_D* 3h9s_D 3pwp_D 2gj6_D 3utp_D*
3uts_D 1qrn_D 3hg1_D 3rdt_A ...
Length = 208
Score = 32.3 bits (73), Expect = 0.12
Identities = 24/128 (18%), Positives = 42/128 (32%), Gaps = 21/128 (16%)
Query: 62 SHVNISSVRVEDSGIYQC--------TATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNS 113
++I + DS +Y C G T + P P +L S S
Sbjct: 73 VSLHIRDSQPSDSALYFCAASEQNNYAQGLTFGLGTRVSVFPYIQNP-DPAVYQLRDSKS 131
Query: 114 RSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLST 173
V CL T D +S K+ ++D + S ++ S+ ++A +
Sbjct: 132 SDKSV---------CLFTDFDSQTNVSQSKDSDVYITDKCVLDMRSMDFKSNSAVAWSNK 182
Query: 174 GHSGNYTC 181
+ C
Sbjct: 183 SD---FAC 187
>2q86_A Valpha14 TCR; INKT cells, TCR, glycolipid recognition, innate
immunity, IM system; HET: NAG BMA MAN FUC; 1.85A {Mus
musculus} PDB: 3quy_C* 3o9w_C* 3qux_C* 3o8x_C* 3quz_C*
3rtq_C* 3rzc_C* 3ta3_C* 3tvm_C* 3qi9_C* 3ard_C* 3are_C*
3arf_C* 3arg_C* 3he6_C* 3he7_C* 3arb_C* 3scm_C* 3sda_C*
3sdc_C* ...
Length = 229
Score = 32.4 bits (73), Expect = 0.13
Identities = 32/205 (15%), Positives = 66/205 (32%), Gaps = 37/205 (18%)
Query: 11 QQTLQPGPPVSLKCIATGNPTPHISWKLDGY---PLAGDRFVMGQYMSLH---------- 57
++ G L+C + P H+ W Y G +
Sbjct: 10 SLVVRQGENCVLQCNYSVTPDNHLRW----YKQDTGKGLVLLTVLVDQKDKTSNGRYSAT 65
Query: 58 ---GDVISHVNISSVRVEDSGIYQCTATNR----VGSQTHSADMRVYDAPGQPQDVKLVT 110
S ++I++ ++D+ Y C +R GS T + P +P +L
Sbjct: 66 LDKDAKHSTLHITATLLDDTATYFCVVGDRGSALFGSGTQLIVIPYIQNP-EPAVYQLKD 124
Query: 111 SNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIAT 170
S+ + CL T D + + ++D + + + S+ +IA
Sbjct: 125 PRSQDSTL---------CLFTDFDSQINVPKTMESGTFITDKCVLDMKAMDSKSNGAIAW 175
Query: 171 LSTGHSGNYTCVASNTVASDNHSSN 195
+ ++TC + + S+
Sbjct: 176 SN---QTSFTCQDIFKETNATYPSS 197
>1wfo_A Sidekick 2; FN3, cell adhesion, structural genomics, riken
structural genomics/proteomics initiative, RSGI; NMR
{Homo sapiens} SCOP: b.1.2.1
Length = 130
Score = 31.2 bits (71), Expect = 0.13
Identities = 8/45 (17%), Positives = 18/45 (40%), Gaps = 4/45 (8%)
Query: 79 CTATNRVGSQTHSADMRV----YDAPGQPQDVKLVTSNSRSIKVH 119
++ R+G + S + D PG P + + S+++
Sbjct: 3 SGSSGRIGDGSPSHPPILERTLDDVPGPPMGILFPEVRTTSVRLI 47
>3noi_A Natural cytotoxicity triggering receptor 3; immune system, innate
immunity, immunoglobulin-like I2 type natural killer
cell activation; HET: 1PG; 1.84A {Homo sapiens} PDB:
3pv6_B*
Length = 120
Score = 31.1 bits (70), Expect = 0.15
Identities = 18/69 (26%), Positives = 24/69 (34%), Gaps = 17/69 (24%)
Query: 11 QQTLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVR 70
+ + PG V T ++ PLA RF+ LH I VR
Sbjct: 47 RDEVVPGKEV---RNGTPEFRGRLA------PLASSRFLHDHQAELH--------IRDVR 89
Query: 71 VEDSGIYQC 79
D+ IY C
Sbjct: 90 GHDASIYVC 98
>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY
acidic protein fold, fibronectin type III fold, hormone-
growth factor complex; NMR {Homo sapiens}
Length = 680
Score = 32.6 bits (73), Expect = 0.16
Identities = 6/48 (12%), Positives = 17/48 (35%)
Query: 72 EDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVH 119
E SG+ +C + + + ++++ S ++V
Sbjct: 133 ECSGVKKCCSNGCGHTCQVPKTLYKGVPLKPRKELRFTELQSGQLEVK 180
>3c5j_A HLA class II histocompatibility antigen, DR alpha; HLA, MHC class
II, glycoprotein, immune response, membrane,
transmembrane, GTP-binding, methylation; HET: NAG; 1.80A
{Homo sapiens} PDB: 1d5x_A* 1d5z_A* 1d6e_A* 1d5m_A
1fyt_A* 1hqr_A 1j8h_A* 1r5i_A 1seb_A 1zgl_A 2seb_A*
1fv1_A* 2ipk_A* 3pdo_A 3pgc_A 3pgd_A 1ymm_A* 1aqd_A
2g9h_A* 1h15_A ...
Length = 181
Score = 31.6 bits (72), Expect = 0.17
Identities = 18/87 (20%), Positives = 35/87 (40%), Gaps = 13/87 (14%)
Query: 102 QPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPP-LTISWLKNGLPILSDAEIT-IRSS 159
P +V ++T++ ++ + C + K PP + ++WL+NG P+ + T
Sbjct: 85 VPPEVTVLTNSPVELREP----NVLICFIDKFTPPVVNVTWLRNGKPVTTGVSETVFLPR 140
Query: 160 GEYT----SSLSIATLSTGHSGNYTCV 182
++ L ST Y C
Sbjct: 141 EDHLFRKFHYLPF-LPSTEDV--YDCR 164
>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system;
1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E
3csp_A 1py9_A
Length = 139
Score = 31.1 bits (70), Expect = 0.18
Identities = 19/131 (14%), Positives = 43/131 (32%), Gaps = 21/131 (16%)
Query: 109 VTSNSRSIKVHSGDRAGVQCLVT--KGDPPLTISWLKNGLPIL-----SDAEITIRSSGE 161
V I+ GD A + C ++ K + + W ++ + + + + E
Sbjct: 9 VIGPGHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPE 68
Query: 162 YTS--------------SLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSI 207
Y +L I + G YTC + + + L+V + ++
Sbjct: 69 YRGRTELLKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVEDPFYWINP 128
Query: 208 ATLSTGHSGNY 218
+ H ++
Sbjct: 129 GRSRSHHHHHH 139
Score = 30.3 bits (68), Expect = 0.32
Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Query: 46 DRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYD 98
R + + G V + I +VR D G Y C + + + +++V D
Sbjct: 71 GRTELLKESIGEGKVA--LRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVED 121
Score = 29.5 bits (66), Expect = 0.61
Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 1/45 (2%)
Query: 204 SLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVPP-HIGPFT 247
+L I + G YTC + + + L+V P I P
Sbjct: 86 ALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVEDPFYWINPGR 130
>3p73_B Beta-2-microglobulin; IG-like C1-type (immunoglobulin-like) domain,
histocompatibi antigen, immune system; HET: 16A; 1.32A
{Gallus gallus} PDB: 3p77_B* 3bev_B 3bew_B 3jvg_C*
2yez_B 2yf5_B 2yf6_B 2yf1_B*
Length = 99
Score = 30.4 bits (69), Expect = 0.18
Identities = 6/29 (20%), Positives = 17/29 (58%)
Query: 135 PPLTISWLKNGLPILSDAEITIRSSGEYT 163
P ++I+ +K+G+P+ + + ++T
Sbjct: 33 PKISITLMKDGVPMEGAQYSDMSFNDDWT 61
>3r08_E T-cell surface glycoprotein CD3 epsilon chain; antibody, T-cell
receptor, signalling, immune SY; 4.10A {Cricetulus
migratorius}
Length = 82
Score = 30.0 bits (67), Expect = 0.20
Identities = 17/83 (20%), Positives = 28/83 (33%), Gaps = 14/83 (16%)
Query: 120 SGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLS-TGHSGN 178
SG + C + + + W KNG + ++ L + S SG
Sbjct: 13 SGTSVELTCPLDSDE---NLKWEKNGQEL----------PQKHDKHLVLQDFSEVEDSGY 59
Query: 179 YTCVASNTVASDNHSSNLRVNEY 201
Y C + + RV+EY
Sbjct: 60 YVCYTPASNKNTYLYLKARVSEY 82
Score = 27.7 bits (61), Expect = 1.3
Identities = 15/67 (22%), Positives = 23/67 (34%), Gaps = 14/67 (20%)
Query: 17 GPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGI 76
G V L C + ++ W+ +G L +++ L VEDSG
Sbjct: 14 GTSVELTCPL--DSDENLKWEKNGQELPQKH---DKHLVLQ---------DFSEVEDSGY 59
Query: 77 YQCTATN 83
Y C
Sbjct: 60 YVCYTPA 66
>1ncn_A T lymphocyte activation antigen CD86; IG V, beta strands, immune
system; 2.70A {Homo sapiens} SCOP: b.1.1.1 PDB: 1i85_A
Length = 110
Score = 30.6 bits (69), Expect = 0.21
Identities = 10/34 (29%), Positives = 20/34 (58%), Gaps = 4/34 (11%)
Query: 49 VMGQYM---SLHGDVISHVNISSVRVEDSGIYQC 79
V +YM S D + + + +++++D G+YQC
Sbjct: 54 VHSKYMGRTSFDSDSWT-LRLHNLQIKDKGLYQC 86
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET:
NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Length = 423
Score = 32.0 bits (72), Expect = 0.21
Identities = 11/62 (17%), Positives = 19/62 (30%)
Query: 180 TCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNV 239
T V + N + + +I + SG + C + N+ V V
Sbjct: 362 TLVKPDGTVLHPKDFNHTDHFSVAIFTIHRILPPDSGVWVCSVNTVAGMVEKPFNISVKV 421
Query: 240 PP 241
P
Sbjct: 422 LP 423
>2nw2_A ELS4 TCR alpha chain; T cell receptor, immune system; 1.40A {Homo
sapiens} PDB: 2nx5_D 4dzb_A
Length = 200
Score = 31.4 bits (71), Expect = 0.21
Identities = 32/197 (16%), Positives = 58/197 (29%), Gaps = 45/197 (22%)
Query: 13 TLQPGPPVSLKCIATGNPTPHISW--------------KLDGYPLAGDRFVM-----GQY 53
T G V + C + + W + RF Y
Sbjct: 10 TATEGAIVQINCTYQTSGFNGLFWYQQHAGEAPTFLSYNVLDGLEEKGRFSSFLSRSKGY 69
Query: 54 MSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQTHS------ADMRVYDAPGQPQDVK 107
L + ++++DS Y C GS + + Y P +
Sbjct: 70 SYLL--------LKELQMKDSASYLCAVQASGGSYIPTFGRGTSLIVHPYIQNPDPAVYQ 121
Query: 108 LVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLS 167
L S S V CL T D +S K+ ++D + S ++ S+ +
Sbjct: 122 LRDSKSSDKSV---------CLFTDFDSQTNVSQSKDSDVYITDKCVLDMRSMDFKSNSA 172
Query: 168 IATLSTGHSGNYTCVAS 184
+A + ++ C +
Sbjct: 173 VAWSN---KSDFACANA 186
Score = 26.4 bits (58), Expect = 9.9
Identities = 13/65 (20%), Positives = 21/65 (32%), Gaps = 2/65 (3%)
Query: 184 SNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHS--SNLRVNVPP 241
SS L ++ S L + L S +Y C + S + + V P
Sbjct: 51 DGLEEKGRFSSFLSRSKGYSYLLLKELQMKDSASYLCAVQASGGSYIPTFGRGTSLIVHP 110
Query: 242 HIGPF 246
+I
Sbjct: 111 YIQNP 115
>1q8m_A Triggering receptor expressed on myeloid cells 1; V-type IG-like
domain, immunoglobulin-like, immune system receptor;
HET: GSH; 2.60A {Homo sapiens} SCOP: b.1.1.1
Length = 127
Score = 30.6 bits (69), Expect = 0.22
Identities = 9/17 (52%), Positives = 14/17 (82%)
Query: 63 HVNISSVRVEDSGIYQC 79
V + +++VEDSG+YQC
Sbjct: 82 RVRMVNLQVEDSGLYQC 98
>2qih_A Protein USPA1; trimeric, parallel alpha-helical coiled-coil, cell
adhesion; 1.90A {Moraxella catarrhalis}
Length = 157
Score = 31.1 bits (69), Expect = 0.22
Identities = 16/79 (20%), Positives = 28/79 (35%), Gaps = 3/79 (3%)
Query: 163 TSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEY---TSSLSIATLSTGHSGNYT 219
+ ++ + G + N +A N N+ N+ S I TL+ + N
Sbjct: 72 MVARAVGNNTQGVATNKADIAKNQADIANNIKNIYELAQQQDQHSSDIKTLAKVSAANTD 131
Query: 220 CVASNTVASDNHSSNLRVN 238
+A N +D L N
Sbjct: 132 RIAKNKAEADASFETLTKN 150
Score = 27.6 bits (60), Expect = 3.3
Identities = 10/74 (13%), Positives = 21/74 (28%), Gaps = 3/74 (4%)
Query: 168 IATLSTGHSGNYTCVASNTVASDNHSSNLRVNEY---TSSLSIATLSTGHSGNYTCVASN 224
+ N +A N H + + ++ + G + N +A N
Sbjct: 35 AQIAKAQANENKDGIAKNQADIQLHDKKITNLGILHSMVARAVGNNTQGVATNKADIAKN 94
Query: 225 TVASDNHSSNLRVN 238
N+ N+
Sbjct: 95 QADIANNIKNIYEL 108
>2or7_A T-cell immunoglobulin and mucin domain- containing protein 2;
beta barrel, immunoglobulin fold, IGV domain, TIM,
immune system; 1.50A {Mus musculus}
Length = 115
Score = 30.3 bits (68), Expect = 0.23
Identities = 16/80 (20%), Positives = 26/80 (32%), Gaps = 17/80 (21%)
Query: 17 GPPVSLKCIATGNP--TPHISWKLDGYPLAGDRFVMGQY------------MSLHGDVIS 62
G PV+L CI + + + W L + + L G++
Sbjct: 12 GHPVTLPCIYSTHLGGIVPMCWGLGECRHSYCIRSLIWTNGYTVTHQRNSRYQLKGNISE 71
Query: 63 H---VNISSVRVEDSGIYQC 79
+ I + V D G Y C
Sbjct: 72 GNVSLTIENTVVGDGGPYCC 91
Score = 27.2 bits (60), Expect = 2.8
Identities = 20/133 (15%), Positives = 42/133 (31%), Gaps = 24/133 (18%)
Query: 114 RSIKVHSGDRAGVQCLVTKGDPP-LTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLS 172
+++ +G + C+ + + + W I ++G T++
Sbjct: 5 TAVQGLAGHPVTLPCIYSTHLGGIVPMCWGLGECRHSYCIRSLIWTNGY--------TVT 56
Query: 173 TGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHS 232
+ Y + + N+ SL+I G G Y CV + H
Sbjct: 57 HQRNSRYQ------LKGNISEGNV-------SLTIENTVVGDGGPYCCVV--EIPGAFHF 101
Query: 233 SNLRVNVPPHIGP 245
+ + V P + P
Sbjct: 102 VDYMLEVKPELVP 114
>3o81_A Beta-2-microglobulin; IG-like C1-type (immunoglobulin-like) domain,
histocompatibi antigen, MHC class I molecule from B21
chicken, immune SYST; 2.00A {Gallus gallus}
Length = 119
Score = 30.5 bits (69), Expect = 0.23
Identities = 11/49 (22%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 135 PPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHSGN-YTCV 182
P ++I+ +K+G+P+ + + ++T + T SG+ Y C
Sbjct: 53 PKISITLMKDGVPMEGAQYSDMSFNDDWTFQRLVHADFTPSSGSTYACK 101
>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology,
IGSF, cell SU receptor signalling, glycosylation,
membrane protein; HET: NAG; 2.90A {Homo sapiens}
Length = 118
Score = 30.6 bits (69), Expect = 0.23
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 66 ISSVRVEDSGIYQC-TATNRVGSQTHSADMRVYDAP 100
+ +RVED G Y C T GS++ +RV P
Sbjct: 83 MFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKP 118
Score = 28.6 bits (64), Expect = 1.1
Identities = 25/132 (18%), Positives = 43/132 (32%), Gaps = 27/132 (20%)
Query: 115 SIKVHSGDRAGVQCLVTKGDPPLT----ISWLKNGLPILSDAEITIRSSGEYTSSLSIAT 170
+ GD + C + + +T ++W ++G S S+A
Sbjct: 9 QVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHG------------------ESGSMAV 50
Query: 171 LSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTC-VASNTVASD 229
+Y+ + + LR +SL + L GNYTC + S
Sbjct: 51 FHQTQGPSYSESKRLEFVAARLGAELR----NASLRMFGLRVEDEGNYTCLFVTFPQGSR 106
Query: 230 NHSSNLRVNVPP 241
+ LRV P
Sbjct: 107 SVDIWLRVLAKP 118
>2bc4_A HLA class II histocompatibility antigen, DM alpha chain; MHC class
II, immune system; HET: NDG BMA; 2.27A {Homo sapiens}
PDB: 1hdm_A 1k8i_A*
Length = 211
Score = 31.6 bits (71), Expect = 0.23
Identities = 16/117 (13%), Positives = 40/117 (34%), Gaps = 9/117 (7%)
Query: 72 EDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIK-VHSGDRAGVQCLV 130
++ G ++ + + P + ++K + G + C V
Sbjct: 64 QEQGDAPAILFDKEFCEWMIQQIGPKLDGKIPVSRGFPIAEVFTLKPLEFGKPNTLVCFV 123
Query: 131 TKGDPP-LTISWLKNGLPILSDAEITIRSSGEYT----SSLSIATLSTGHSGNYTCV 182
+ PP LT++W + +P+ + + + S L+ T ++C+
Sbjct: 124 SNLFPPMLTVNWQHHSVPVEGFGPTFVSAVDGLSFQAFSYLNF-TPEPSDI--FSCI 177
>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the
antigen combining site superantigen FAB VH3 specificity;
2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B
1adq_H
Length = 223
Score = 31.3 bits (72), Expect = 0.25
Identities = 30/144 (20%), Positives = 50/144 (34%), Gaps = 32/144 (22%)
Query: 66 ISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIK-------- 117
++S+R ED+ +Y C +V +A D GQ LVT +S S
Sbjct: 83 MNSLRAEDTAVYYCA---KVKFYDPTAPN---DYWGQG---TLVTVSSGSASAPTLFPLV 133
Query: 118 ----VHSGDRAGVQCLVTKGDP-PLTISWLKNGLPILSDAEI--TIRSSGEYTSS----L 166
+ V CL P +T SW +S ++ G+Y ++ L
Sbjct: 134 SCENSNPSSTVAVGCLAQDFLPDSITFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLL 193
Query: 167 SIATLSTGHSGNYTCV----ASNT 186
++ G + + C N
Sbjct: 194 PSKDVAQGTNEHVVCKVQHPNGNK 217
>2yux_A Myosin-binding protein C, SLOW-type; fibronectin III domain,
structural genomics., NPPSFA; NMR {Homo sapiens}
Length = 120
Score = 30.4 bits (69), Expect = 0.26
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 86 GSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVH 119
GS S D+++ D PG PQ VK+ ++ +
Sbjct: 4 GSSGASIDIQIIDRPGPPQIVKIEDVWGENVALT 37
>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera
phosphorylation, transmembrane, tyrosine-protein kinase,
glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB:
2x10_A* 2x11_A 3mx0_A* 3mbw_A*
Length = 536
Score = 31.7 bits (71), Expect = 0.27
Identities = 8/113 (7%), Positives = 14/113 (12%), Gaps = 5/113 (4%)
Query: 12 QTLQPGPPVSLKCIATGN---PTPHISWKLDGYPLAGDRFVMGQYMSLHGDVISHV--NI 66
G + C G P + + S
Sbjct: 240 VVPPGGEEPRMHCAVDGEWLVPIGQCLCQAGYEKVEDACQACSPGFFKFEASESPCLECP 299
Query: 67 SSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVH 119
G C P +++
Sbjct: 300 EHTLPSPEGATSCECEEGFFRAPQDPASMPCTRPPSAPHYLTAVGMGAKVELR 352
>1uvq_A HLA class II histocompatibility antigen; immunology, MHC class II,
diabetes, narcolepsy, autoimmune disease, structural
proteomics in europe, spine, structural genomics; HET:
NAG FUC BMA; 1.8A {Homo sapiens} SCOP: b.1.1.2 d.19.1.1
PDB: 3pl6_A* 4d8p_A 1s9v_A 2nna_A 1jk8_A*
Length = 197
Score = 31.0 bits (70), Expect = 0.28
Identities = 13/53 (24%), Positives = 20/53 (37%), Gaps = 8/53 (15%)
Query: 135 PPLTISWLKNGLPILSDAEIT-IRSSGEYT----SSLSIATLSTGHSGNYTCV 182
P + I+WL NG + T S +++ S L+ S Y C
Sbjct: 118 PVVNITWLSNGQSVTEGVSETSFLSKSDHSFFKISYLTF-LPSADEI--YDCK 167
>3bia_X T-cell immunoglobulin and mucin domain- containing protein 4; beta
barrel, immunoglobulin fold, IGV domain, TIM,
glycoprotein; HET: TLA; 2.20A {Mus musculus} PDB:
3bi9_X* 3bib_X*
Length = 116
Score = 30.3 bits (68), Expect = 0.28
Identities = 22/128 (17%), Positives = 38/128 (29%), Gaps = 22/128 (17%)
Query: 115 SIKVHSGDRAGVQCLVTKGDPP-LTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLST 173
+I G + C ++ W K P +R+ G S
Sbjct: 5 TIIGFLGQPVTLPCHYLSWSQSRNSMCWGKGSCPNSKCNAELLRTDGTRIIS-------- 56
Query: 174 GHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSS 233
S YT + + SL+I+ + G SG Y C ++
Sbjct: 57 RKSTKYT------LLGKVQFGEV-------SLTISNTNRGDSGVYCCRIEVPGWFNDVKK 103
Query: 234 NLRVNVPP 241
N+R+ +
Sbjct: 104 NVRLELRR 111
Score = 27.6 bits (61), Expect = 2.0
Identities = 18/81 (22%), Positives = 27/81 (33%), Gaps = 19/81 (23%)
Query: 17 GPPVSLKCI--ATGNPTPHISWKLDGYPLAGDRFV-------------MGQYMSLHGDVI 61
G PV+L C + + W P + +Y +L G V
Sbjct: 11 GQPVTLPCHYLSWSQSRNSMCWGKGSCPNSKCNAELLRTDGTRIISRKSTKY-TLLGKVQ 69
Query: 62 SH---VNISSVRVEDSGIYQC 79
+ IS+ DSG+Y C
Sbjct: 70 FGEVSLTISNTNRGDSGVYCC 90
>3lqz_A HLA class II histocompatibility antigen, DP alpha; MHC, immune,
disulfide bond, glycoprotein, immune respo membrane, MHC
II, transmembrane, immune system; HET: NAG NDG; 3.25A
{Homo sapiens}
Length = 181
Score = 30.9 bits (70), Expect = 0.31
Identities = 11/52 (21%), Positives = 18/52 (34%), Gaps = 8/52 (15%)
Query: 135 PPLTISWLKNGLPILSDAEIT-IRSSGEYT----SSLSIATLSTGHSGNYTC 181
P L ++WL NG + + +Y+ L+ S Y C
Sbjct: 115 PVLNVTWLCNGELVTEGVAESLFLPRTDYSFHKFHYLTF-VPSAEDF--YDC 163
>2pnd_A V-SET and immunoglobulin domain containing 4; complement receptor,
IG-like domain, immune system; 1.00A {Mus musculus} PDB:
2icc_A 2ice_S* 2icf_S*
Length = 119
Score = 29.9 bits (67), Expect = 0.33
Identities = 16/85 (18%), Positives = 28/85 (32%), Gaps = 17/85 (20%)
Query: 17 GPPVSLKCI---ATGNPTPHISW-KLDGYPLA--------GDRFVMGQYM---SLHGDVI 61
V ++CI G + W G GD +Y + V
Sbjct: 16 KGDVKIQCIYDPLRGYRQVLVKWLVRHGSDSVTIFLRDSTGDHIQQAKYRGRLKVSHKVP 75
Query: 62 SHV--NISSVRVEDSGIYQCTATNR 84
V I++++++D Y C T +
Sbjct: 76 GDVSLQINTLQMDDRNHYTCEVTWQ 100
Score = 25.7 bits (56), Expect = 9.3
Identities = 20/113 (17%), Positives = 32/113 (28%), Gaps = 23/113 (20%)
Query: 114 RSIKVHSGDRAGVQCLVT--KGDPPLTISWLKNGLP-----ILSDAEITIRSSGEY---- 162
S+ +QC+ +G + + WL L D+ +Y
Sbjct: 9 ESVTGTWKGDVKIQCIYDPLRGYRQVLVKWLVRHGSDSVTIFLRDSTGDHIQQAKYRGRL 68
Query: 163 --------TSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSI 207
SL I TL +YTC V N + + L +
Sbjct: 69 KVSHKVPGDVSLQINTLQMDDRNHYTC----EVTWQTPDGNQVIRDKIIELRV 117
>3mlr_H Human monoclonal anti-HIV-1 GP120 V3 antibody 255 heavy chain;
human monoclonal antibody, FAB, third variable
antibody-antigen interaction; 1.80A {Homo sapiens} PDB:
3mls_H 3mlt_H 3mlu_H 3mlv_H
Length = 226
Score = 30.9 bits (71), Expect = 0.36
Identities = 37/148 (25%), Positives = 59/148 (39%), Gaps = 41/148 (27%)
Query: 66 ISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIK-------- 117
++++ D+G Y CT R+ + +D GQ ++ +S + K
Sbjct: 83 WTTLQASDTGKYFCT---RLYLFEGAQSSNAFDLWGQGT---MILVSSGTTKGPSVFPLA 136
Query: 118 ----VHSGDRAGVQCLVTKGDP-PLTISWLKNGL--------PILSDAEITIRSSGEYTS 164
SG A + CLV P P+T+SW L +L +SSG Y+
Sbjct: 137 PSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVL-------QSSGLYSL 189
Query: 165 SLSIATL--STGHSGNYTCV----ASNT 186
S S+ T+ S+ + Y C SNT
Sbjct: 190 S-SVVTVPSSSLGTQTYICNVNHKPSNT 216
>1smo_A Triggering receptor expressed on myeloid cells 1; activating
receptors, TREM-1, innate immune system receptor,
system; HET: TLA; 1.47A {Homo sapiens} SCOP: b.1.1.1
Length = 119
Score = 29.8 bits (67), Expect = 0.39
Identities = 9/17 (52%), Positives = 14/17 (82%)
Query: 63 HVNISSVRVEDSGIYQC 79
V + +++VEDSG+YQC
Sbjct: 77 RVRMVNLQVEDSGLYQC 93
>2q7n_A Leukemia inhibitory factor receptor; cytokine cell surface receptor
complex LIFR LIF, cytokine RE cytokine complex; HET: NAG
FUC MAN; 4.00A {Mus musculus}
Length = 488
Score = 31.1 bits (69), Expect = 0.44
Identities = 18/120 (15%), Positives = 34/120 (28%), Gaps = 16/120 (13%)
Query: 16 PGPPVSLKCIATGNPTPHISWKLD-----------GYPLAG---DRFVMGQYMSLHGDVI 61
P P L C SW Y L + + + +
Sbjct: 287 PDVPQKLSCETHDLKEIICSWNPGRITGLVGPRNTEYTLFESISGKSAVFHRIEGLTNET 346
Query: 62 SHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYD--APGQPQDVKLVTSNSRSIKVH 119
+ + ++ + T N +G + + V + AP P +K+ NS +
Sbjct: 347 YRLGVQMHPGQEIHNFTLTGRNPLGQAQSAVVINVTERVAPHDPTSLKVKDINSTVVTFS 406
>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S
disease, immunotherapies, APP, immune system; 1.59A {Mus
musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H
2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H*
2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H*
1n6q_H* 1t03_H* ...
Length = 228
Score = 30.6 bits (70), Expect = 0.45
Identities = 39/143 (27%), Positives = 56/143 (39%), Gaps = 32/143 (22%)
Query: 66 ISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKV------- 118
I+SV D+ Y C R G ++ +D GQ +T +S
Sbjct: 84 ITSVDTADTATYYCA---RRGFYGRKYEVNHFDYWGQG---TTLTVSSAKTTAPSVYPLA 137
Query: 119 -----HSGDRAGVQCLVTKGDP-PLTISWLKNGLPILSDAEIT---IRSSGEYTSSLSIA 169
+G + CLV P P+T++W +G LS T + S YT S S
Sbjct: 138 PVCGDTTGSSVTLGCLVKGYFPEPVTLTW-NSGS--LSSGVHTFPAVLQSDLYTLS-SSV 193
Query: 170 TL--STGHSGNYTCV----ASNT 186
T+ ST S + TC AS+T
Sbjct: 194 TVTSSTWPSESITCNVAHPASST 216
>2p24_A H-2 class II histocompatibility antigen, A-U ALPH; MHC, I-AU,
immunoglobulin fold, MBP, immune system; 2.15A {Mus
musculus} SCOP: b.1.1.2 d.19.1.1
Length = 236
Score = 30.6 bits (69), Expect = 0.46
Identities = 12/53 (22%), Positives = 20/53 (37%), Gaps = 8/53 (15%)
Query: 135 PPLTISWLKNGLPILSDAEIT-IRSSGEYT----SSLSIATLSTGHSGNYTCV 182
P + I+WL+N + T + +Y+ S L+ S Y C
Sbjct: 149 PVINITWLRNSKSVADGVYETSFFVNRDYSFHKLSYLTF-IPSDDDI--YDCK 198
>1nez_G T-cell surface glycoprotein CD8 alpha chain; immune system; HET:
NAG; 2.10A {Synthetic} SCOP: b.1.1.1 PDB: 1bqh_G*
3b9k_A* 2atp_A* 2arj_R
Length = 128
Score = 29.5 bits (66), Expect = 0.54
Identities = 13/92 (14%), Positives = 25/92 (27%), Gaps = 21/92 (22%)
Query: 13 TLQPGPPVSLKCIATGNPTPHISW-------------------KLDGYPLAGDRFVMGQY 53
+ G V L C G+ + SW ++ +
Sbjct: 15 DAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKL 74
Query: 54 MSLHGDVISHV--NISSVRVEDSGIYQCTATN 83
S D + ++ E+ G Y C+ +
Sbjct: 75 FSAMRDTNNKYVLTLNKFSKENEGYYFCSVIS 106
>1lk2_B Beta-2-microglobulin; class I MHC-peptide complex, high resolution,
anisotropic AN refinement, immune system; HET: NAG FUC;
1.35A {Mus musculus} SCOP: b.1.1.2 PDB: 1bqh_B 1cd1_B
1fo0_L* 1fzj_B* 1fzm_B* 1fzo_B* 1g6r_L 1fzk_B* 1g7q_B*
1hoc_B 1inq_B 1juf_B 1k8d_B 1kbg_L* 1kj2_L* 1kj3_L
1kpu_B* 1kpv_B* 1ld9_B 1ldp_L* ...
Length = 99
Score = 28.9 bits (65), Expect = 0.57
Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Query: 128 CLVTKGDPP-LTISWLKNGLPILSDAEITIRSSGEYT-SSLSIATLSTGHSGNYTCV 182
C VT+ PP + I LKNG I + S +++ L+ + + Y C
Sbjct: 25 CYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTEFTPTETDTYACR 81
>1iak_A MHC class II I-AK; histocompatibility antigen, peptide complex,
histocompa antigen I-AK; HET: NAG; 1.90A {Mus musculus}
SCOP: b.1.1.2 d.19.1.1 PDB: 1d9k_C* 1k2d_A* 1jl4_A
2pxy_C 1u3h_C 2z31_C 1muj_A* 1lnu_A* 3c5z_C 3c60_C
3c6l_C 3rdt_C 2iad_A 1iao_A 1es0_A 3cup_A* 3mbe_A*
1f3j_A*
Length = 199
Score = 30.1 bits (68), Expect = 0.58
Identities = 12/53 (22%), Positives = 20/53 (37%), Gaps = 8/53 (15%)
Query: 135 PPLTISWLKNGLPILSDAEIT-IRSSGEYT----SSLSIATLSTGHSGNYTCV 182
P + I+WL+N + T + +Y+ S L+ S Y C
Sbjct: 119 PVINITWLRNSKSVTDGVYETSFFVNRDYSFHKLSYLTF-IPSDDDI--YDCK 168
>3u1s_H FAB PGT145 heavy chain; IGG, broadly neutralizing antibody, HIV-1
GP120, immune SYST; HET: TYS; 2.30A {Homo sapiens}
Length = 267
Score = 30.2 bits (69), Expect = 0.71
Identities = 35/161 (21%), Positives = 56/161 (34%), Gaps = 51/161 (31%)
Query: 66 ISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVK----------LVT----- 110
+ + +D+ IY C ++ + + + D VT
Sbjct: 106 LRGLTADDTAIYYCLTGSKHRLRDYFLYNEYGPNYEEWGDYLATLDVWGHGTAVTVSSAS 165
Query: 111 ----------SNSRSIKVHSGDRAGVQCLVTKGDP-PLTISWLKNGL--------PILSD 151
+S+S SG A + CLV P P+T+SW L +L
Sbjct: 166 TKGPSVFPLAPSSKST---SGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVL-- 220
Query: 152 AEITIRSSGEYTSSLSIATL--STGHSGNYTCV----ASNT 186
+SSG Y+ S S+ T+ S+ + Y C SNT
Sbjct: 221 -----QSSGLYSLS-SVVTVPSSSLGTQTYICNVNHKPSNT 255
>3l5i_A Interleukin-6 receptor subunit beta; cytokine receptor, fibronectin
type III domain, alternative cell membrane, disulfide
bond; 1.90A {Homo sapiens} PDB: 3l5j_A
Length = 290
Score = 30.2 bits (68), Expect = 0.80
Identities = 12/122 (9%), Positives = 23/122 (18%), Gaps = 14/122 (11%)
Query: 11 QQTLQPGPPVSLKCIATGNPTPHISWK-----LDGYPLAGDRFVMGQYMSLHGDVISHVN 65
Q PV + + W + Y L
Sbjct: 96 ACDFQATHPVMDLKAFPKDNMLWVEWTTPRESVKKYILEWCVLSDKAPCITDWQQEDGTV 155
Query: 66 ISSVRVEDSGIYQC-----TATNRVGSQTHSADMRVY---DAPGQPQDVKLVTSNSRSIK 117
+ + +C T G ++ Y P + V+
Sbjct: 156 HRTYLRGNLAESKCYLITVTPVYADGPG-SPESIKAYLKQAPPSKGPTVRTKKVGKNEAV 214
Query: 118 VH 119
+
Sbjct: 215 LE 216
>1bii_B Beta-2 microglobulin, MHC class I H-2DD; complex (MHC I/peptide),
major histocompatibility complex class I DD,
transmembrane, glycoprotein; 2.40A {Mus musculus} SCOP:
b.1.1.2
Length = 119
Score = 29.0 bits (65), Expect = 0.83
Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Query: 128 CLVTKGDPP-LTISWLKNGLPILSDAEITIRSSGEYT-SSLSIATLSTGHSGNYTCV 182
C VT+ PP + I LKNG I + S +++ L+ + + Y C
Sbjct: 45 CYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTEFTPTETDTYACR 101
>4aen_A HLA class II histocompatibility antigen, DR alpha; immune system,
SELF antigen, invariant chain, CLIP; 2.20A {Homo
sapiens}
Length = 207
Score = 29.7 bits (67), Expect = 0.83
Identities = 12/53 (22%), Positives = 20/53 (37%), Gaps = 8/53 (15%)
Query: 135 PPLTISWLKNGLPILSDAEIT-IRSSGEYT----SSLSIATLSTGHSGNYTCV 182
P + ++WL+NG P+ + T ++ L ST Y C
Sbjct: 130 PVVNVTWLRNGKPVTTGVSETVFLPREDHLFRKFHYLPF-LPSTEDV--YDCR 179
>1zs8_A Histocompatibility 2, M region locus 10.5; major histocompatibility
complex, MHC, vomeronasal organ, VN receptors, pheromone
receptors, pepti immune system; HET: NAG; 3.00A {Mus
musculus} SCOP: b.1.1.2 d.19.1.1
Length = 274
Score = 30.0 bits (68), Expect = 0.84
Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
Query: 138 TISWLKNGLPILSDAE-ITIRSSGEYTSSLSIA-TLSTGHSGNYTCV 182
T++W ++G D E R +G+ T A + G YTC
Sbjct: 213 TLTWKRDGKNHTQDMELPDTRPAGDGTFQKWAAVVVPFGEELRYTCH 259
>1hkf_A NKP44, NK cell activating receptor; natural cytotoxicity receptor,
immunoglobulin domain; 2.2A {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 28.8 bits (64), Expect = 0.87
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 63 HVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVY 97
V ++ +R EDSG Y C R + S +R Y
Sbjct: 85 TVTMTDLREEDSGHYWC-RIYRPSDNSVSKSVRFY 118
>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane,
phosphorylation, immunoglobulin fold, signal; 1.90A
{Rattus norvegicus} SCOP: b.1.1.1
Length = 124
Score = 28.8 bits (64), Expect = 0.92
Identities = 17/137 (12%), Positives = 33/137 (24%), Gaps = 21/137 (15%)
Query: 108 LVTSNSRSIKVHSGDRAGVQCLVTKGDPP---LTISWLKNGLPILSDAEITIRSSGEYTS 164
+V R + G + + C + ++ +W + S Y
Sbjct: 1 IVVYTDREVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQ-----PEGGRDAISIFHYAK 55
Query: 165 SLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASN 224
V + S+ I L +G +TC N
Sbjct: 56 GQPYIDEVGTFKERIQWVGD-------------PSWKDGSIVIHNLDYSDNGTFTCDVKN 102
Query: 225 TVASDNHSSNLRVNVPP 241
+S + + V
Sbjct: 103 PPDIVGKTSQVTLYVFE 119
Score = 28.4 bits (63), Expect = 1.2
Identities = 5/31 (16%), Positives = 13/31 (41%)
Query: 66 ISSVRVEDSGIYQCTATNRVGSQTHSADMRV 96
I ++ D+G + C N ++ + +
Sbjct: 85 IHNLDYSDNGTFTCDVKNPPDIVGKTSQVTL 115
>3gbl_A BETA2-microglobulin; immune response, immunoglobulin domain, MHC I,
secreted, immune system; 2.10A {Ctenopharyngodon idella}
Length = 97
Score = 28.5 bits (64), Expect = 0.96
Identities = 11/52 (21%), Positives = 18/52 (34%), Gaps = 7/52 (13%)
Query: 135 PPLTISWLKNGLPILSDAEITIRSSGEYT----SSLSIATLSTGHSGNYTCV 182
P ++I LKNG I + + + S+S Y+C
Sbjct: 33 PDISIELLKNGEVIADAQQTDLAFEKGWQFHLTKSVSF-KPEKSDE--YSCS 81
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller,
3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core
complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A*
2h6q_A* 3eg6_A 4erq_A 2h6n_A 2gnq_A 2xl2_A 2xl3_A
3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A
2h13_A 3p4f_A 4a7j_A* 2h9l_A ...
Length = 312
Score = 29.7 bits (68), Expect = 1.0
Identities = 14/83 (16%), Positives = 30/83 (36%), Gaps = 14/83 (16%)
Query: 155 TIR----SSGEYTSSLSIATLSTGHSGNYTCVA----SNTVASDNHSSNLRVNEYTSSLS 206
R +SG+ + TL + + V + + + L++ +Y+
Sbjct: 172 LCRIWDTASGQ-----CLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 226
Query: 207 IATLSTGHSGNYTCVASNTVASD 229
+ T TGH C+ +N +
Sbjct: 227 LKTY-TGHKNEKYCIFANFSVTG 248
>3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A
{Homo sapiens} PDB: 1fnh_A
Length = 290
Score = 29.8 bits (67), Expect = 1.0
Identities = 16/124 (12%), Positives = 35/124 (28%), Gaps = 23/124 (18%)
Query: 10 IQQTLQPGPPVSLKCIATGNPTPHISWK-----LDGYPLAGDRFVMGQYMSLHGDVISHV 64
+ PP + T ISW+ + G+ + + +G
Sbjct: 107 VTTLENVSPPRRARVTDATETTITISWRTKTETITGFQV--------DAVPANGQTPIQR 158
Query: 65 NIS----SVRVED---SGIYQCT--ATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRS 115
I S + Y+ N ++ + A P +++ + + S
Sbjct: 159 TIKPDVRSYTITGLQPGTDYKIYLYTLNDNA-RSSPVVIDASTAIDAPSNLRFLATTPNS 217
Query: 116 IKVH 119
+ V
Sbjct: 218 LLVS 221
>2ed9_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 124
Score = 28.8 bits (65), Expect = 1.1
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Query: 78 QCTATNRVGSQTHSADMRVY---DAPGQ-PQDVKLVTSNSRSIKVH 119
++ NR G + D+ V D P PQ+V L NSRSIKV
Sbjct: 3 SGSSGNRYGPGVSTDDITVVTLSDVPSAPPQNVSLEVVNSRSIKVS 48
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport
protein; 2.50A {Saccharomyces cerevisiae}
Length = 814
Score = 30.1 bits (68), Expect = 1.1
Identities = 13/78 (16%), Positives = 26/78 (33%), Gaps = 16/78 (20%)
Query: 155 TIR----SSGEYTSSLSIATLSTGHSGNYTCVA------SNTVASDNHSSNLRVNEYTSS 204
T++ TL+TG V + + + +++ +Y +
Sbjct: 164 TVKVWSLGQST-----PNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK 218
Query: 205 LSIATLSTGHSGNYTCVA 222
+ATL GH N +
Sbjct: 219 SCVATL-EGHMSNVSFAV 235
>1k5n_B Beta-2-microglobulin, light chain; MHC(major histocompatibility
complex), HLA(human leukocyte A immune system; 1.09A
{Homo sapiens} SCOP: b.1.1.2 PDB: 1a9b_B 1b0g_B 1b0r_B
1bd2_B 1cg9_B 1a9e_B 1duy_B 1eey_B 1eez_B 1efx_B 1gzp_B*
1gzq_B* 1hhg_B 1hhh_B 1hhi_B 1hhj_B 1hhk_B 1i1f_B 1i1y_B
1duz_B* ...
Length = 100
Score = 28.1 bits (63), Expect = 1.1
Identities = 12/60 (20%), Positives = 20/60 (33%), Gaps = 8/60 (13%)
Query: 128 CLVTKGDPP-LTISWLKNGLPILSDAEITIRSSGEYT----SSLSIATLSTGHSGNYTCV 182
C V+ P + + LKNG I + S +++ T + Y C
Sbjct: 26 CYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEF-TPTEKDE--YACR 82
>3mbe_C I-AG7; T cell receptor, histocompatability antigen, MHC class II, I
immune system; HET: NAG; 2.89A {Mus musculus}
Length = 229
Score = 29.2 bits (65), Expect = 1.2
Identities = 23/126 (18%), Positives = 44/126 (34%), Gaps = 18/126 (14%)
Query: 62 SHVNISSVRVEDSGIYQCTA--TNRVGSQTHSADMRVYDAPG----QPQDVKLVTSNSRS 115
S ++I ++EDSG Y C A + P +P +L S+
Sbjct: 70 STLHIKDAQLEDSGTYFCAAEDGGSGNKLIFGTGTLLSVKPNIQNPEPAVYQLKDPRSQD 129
Query: 116 IKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGH 175
+ CL T D + + ++D + + + S+ +IA +
Sbjct: 130 STL---------CLFTDFDSQINVPKTMESGTFITDKCVLDMKAMDSKSNGAIA---WSN 177
Query: 176 SGNYTC 181
++TC
Sbjct: 178 QTSFTC 183
Score = 28.9 bits (64), Expect = 1.9
Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 2/63 (3%)
Query: 182 VASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDN--HSSNLRVNV 239
+A T + S E S+L I SG Y C A + + + + ++V
Sbjct: 49 LAQGTKENGRLKSTFNSKERYSTLHIKDAQLEDSGTYFCAAEDGGSGNKLIFGTGTLLSV 108
Query: 240 PPH 242
P+
Sbjct: 109 KPN 111
>3dmm_C T-cell surface glycoprotein CD8 alpha chain; T cell CO-receptor
CD8AB MHC complex, immune response, membrane, MHC I,
phosphoprotein, transmembrane; 2.60A {Mus musculus}
Length = 166
Score = 28.8 bits (64), Expect = 1.2
Identities = 14/92 (15%), Positives = 26/92 (28%), Gaps = 21/92 (22%)
Query: 13 TLQPGPPVSLKCIATGNPTPHISW------KLDGYP-----LAGDRFVMGQYMSLHGDVI 61
+ G V L C G+ + SW P +A + L+ +
Sbjct: 20 DAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKL 79
Query: 62 SHV----------NISSVRVEDSGIYQCTATN 83
++ E+ G Y C+ +
Sbjct: 80 FSAMRDTNNKYVLTLNKFSKENEGYYFCSVIS 111
>2ywz_A NEW antigen receptor variable domain; IG VNAR, immune system; 2.21A
{Orectolobus maculatus} PDB: 2ywy_A
Length = 111
Score = 28.1 bits (63), Expect = 1.3
Identities = 16/62 (25%), Positives = 24/62 (38%), Gaps = 13/62 (20%)
Query: 45 GDRFVM-----GQYMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDA 99
G R+ + SL IS +RVEDSG Y+C A ++ + +
Sbjct: 52 GGRYDETVDKGSKSFSLR--------ISDLRVEDSGTYKCQADYSPSCYSYPSLESAVEG 103
Query: 100 PG 101
G
Sbjct: 104 AG 105
>1xt5_A Variable region-containing chitin-binding protein 3; innate
immunity, VCBP, primordial antigen receptor, florida
lancelet, amphioxus; 1.15A {Branchiostoma floridae}
Length = 135
Score = 28.7 bits (63), Expect = 1.4
Identities = 6/30 (20%), Positives = 10/30 (33%)
Query: 66 ISSVRVEDSGIYQCTATNRVGSQTHSADMR 95
++ V +D G Y C D +
Sbjct: 96 LTHVHPQDGGRYWCQVAQWSIRTEFGLDAK 125
>3qjh_A 5C.C7 alpha chain; immunoglobulin domain, T cell receptor, immune
system; 1.90A {Mus musculus} PDB: 3qiu_C* 3qiw_C* 3qjf_A
3qib_C 2ial_A 2iam_C 2ian_D 3rug_E* 3axl_A
Length = 205
Score = 28.9 bits (64), Expect = 1.4
Identities = 25/125 (20%), Positives = 45/125 (36%), Gaps = 17/125 (13%)
Query: 62 SHVNISSVRVEDSGIYQCTATNRVGS-----QTHSADMRVYDAPGQPQDVKLVTSNSRSI 116
S ++I ++EDSG Y C A + + P +L S S
Sbjct: 72 STLHIRDAQLEDSGTYFCAAEASNTNKVVFGTGTRLQVLPNIQNPDPAVYQLRDSKSSDK 131
Query: 117 KVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGHS 176
V CL T D +S K+ ++D + S ++ S+ ++A +
Sbjct: 132 SV---------CLFTDFDSQTNVSQSKDSDVYITDKCVLDMRSMDFKSNSAVAWSN---K 179
Query: 177 GNYTC 181
++ C
Sbjct: 180 SDFAC 184
>3r0n_A Poliovirus receptor-related protein 2; IG-domain, cell-adhesion
molecule, virus entry receptor, STR genomics,
PSI-biology; 1.30A {Homo sapiens}
Length = 128
Score = 28.4 bits (63), Expect = 1.4
Identities = 12/32 (37%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 66 ISSVRVEDSGIYQCT-ATNRVGSQTHSADMRV 96
+ + VED G Y C AT GS +RV
Sbjct: 97 LHGLTVEDEGNYTCEFATFPKGSVRGMTWLRV 128
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX,
D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Length = 401
Score = 29.5 bits (67), Expect = 1.5
Identities = 10/67 (14%), Positives = 24/67 (35%), Gaps = 7/67 (10%)
Query: 168 IATLSTGHSGNYTCVA----SNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCVA- 222
A T S V + ++ + + + + S + T+ GH C++
Sbjct: 126 SALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTM-AGHQARVGCLSW 184
Query: 223 -SNTVAS 228
+ ++S
Sbjct: 185 NRHVLSS 191
>2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune system;
1.63A {Mus musculus} PDB: 2ptv_A
Length = 110
Score = 27.9 bits (62), Expect = 1.6
Identities = 11/33 (33%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 66 ISSVRVEDSGIYQCTATNRVGSQTHSADMRVYD 98
IS+VR ED G Y R + V+D
Sbjct: 77 ISNVRKEDKGTYYMR-VLRETENELKITLEVFD 108
Score = 27.1 bits (60), Expect = 3.5
Identities = 8/45 (17%), Positives = 14/45 (31%), Gaps = 1/45 (2%)
Query: 196 LRVNEYTSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNVP 240
+ + E +L I+ + G Y + L V P
Sbjct: 66 VYLEENNGALHISNVRKEDKGTYYMRVLRET-ENELKITLEVFDP 109
Score = 26.0 bits (57), Expect = 7.2
Identities = 14/105 (13%), Positives = 26/105 (24%), Gaps = 17/105 (16%)
Query: 108 LVTSNSRSIKVHSGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEY----- 162
+ I ++G ++ P I+WL + E S+
Sbjct: 5 RARGSIPDINAYTGSNVTLKIHKDPLGPYRRITWLHTKNQKI--LEYNYNSTKTIFESEF 62
Query: 163 ---------TSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRV 198
+L I+ + G Y + L V
Sbjct: 63 KGRVYLEENNGALHISNVRKEDKGTYYMRVLRET-ENELKITLEV 106
>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC,
antigen recognition, TCR-PMHC, membrane receptor
system; 2.75A {Mus musculus}
Length = 256
Score = 28.9 bits (65), Expect = 1.8
Identities = 19/85 (22%), Positives = 33/85 (38%), Gaps = 21/85 (24%)
Query: 12 QTLQPGPPVSLKCIATGNPTPHISW---------KLDGYPLAGDRFVMGQYMSLHGDVIS 62
T+ G + L+C + + TP++ W ++ +GD V G +G
Sbjct: 13 VTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGPQMLLKYYSGDPVVQGV----NGFEAE 68
Query: 63 --------HVNISSVRVEDSGIYQC 79
H+ +SV DS +Y C
Sbjct: 69 FSKSDSSFHLRKASVHRSDSAVYFC 93
Score = 26.6 bits (59), Expect = 10.0
Identities = 13/91 (14%), Positives = 27/91 (29%), Gaps = 15/91 (16%)
Query: 13 TLQPGPPVSLKCIATGNPTPHISW---------KLDGYPLAGDRFVMGQY-----MSLHG 58
G V+L C T + ++ W +L Y +G +
Sbjct: 148 VTVTGENVTLSCRQTNS-HNYMYWYRQDTGHELRLIYYSYGAGNLQIGDVPDGYKATRTT 206
Query: 59 DVISHVNISSVRVEDSGIYQCTATNRVGSQT 89
+ + S + +Y C +++ G
Sbjct: 207 QEDFFLTLESASPSQTSLYFCASSDAPGQLY 237
>1wf5_A Sidekick 2 protein; FNIII domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 121
Score = 27.7 bits (62), Expect = 1.9
Identities = 11/36 (30%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
Query: 86 GSQTHSADMRVYDAPGQPQDVKLVTSN--SRSIKVH 119
GS SA +RV P P+ S R+I +
Sbjct: 4 GSSGRSAHLRVRQLPHAPEHPVATLSTVERRAINLT 39
>3nwm_A Peptide/beta-2microglobulin/MHC class I H-2KD CHI protein;
peptide-MHC complex, immunoglobulin fold system; 2.70A
{Synthetic}
Length = 443
Score = 29.0 bits (65), Expect = 2.0
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 138 TISWLKNGLPILSDAE-ITIRSSGEYTSSLSIA-TLSTGHSGNYTCV 182
T++W NG + D E + R +G+ T A + G NYTC
Sbjct: 359 TLTWQLNGEDLTQDMELVETRPAGDGTFQKWAAVVVPLGKEQNYTCH 405
>2qrt_A H-2KB, H-2 class I histocompatibility antigen K-B alpha chain,
beta-2 microglobulin, ovalbumin-derived...; MHC-I,
single chain MHC-I, glycoprotein; 1.80A {Mus musculus}
PDB: 2qrs_A 2qri_A
Length = 422
Score = 29.0 bits (65), Expect = 2.1
Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 138 TISWLKNGLPILSDAE-ITIRSSGEYTSSLSIA-TLSTGHSGNYTCV 182
T++W NG ++ D E + R +G+ T + + G YTC
Sbjct: 356 TLTWQLNGEELIQDMELVETRPAGDGTFQKWASVVVPLGKEQYYTCH 402
>3c6l_A TCR 2W20 alpha chain; TCR-PMHC complex; 3.40A {Mus musculus} SCOP:
b.1.1.1 b.1.1.2
Length = 185
Score = 28.3 bits (63), Expect = 2.1
Identities = 27/186 (14%), Positives = 56/186 (30%), Gaps = 32/186 (17%)
Query: 13 TLQPGPPVSLKCIATGNPTPHISWKLDGY---PLAGDRFVMGQYMSLHG----------- 58
T+ G L C + + W Y P ++ +
Sbjct: 11 TVWEGETAILNCSYEDSTFDYFPW----YHQFPGESPALLIAIRPVSNKKEDGRFTIFFN 66
Query: 59 --DVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSI 116
+ ++I+ + DS Y C A++ + V P+ + RS
Sbjct: 67 KREKKFSLHIADSQPGDSATYFCAASDNRIFFGDGTQLVVKPNIQNPEPAVYQLKDPRS- 125
Query: 117 KVHSGDRAGVQCLVTKGDP-PLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATLSTGH 175
+ CL T D +++G I + +++ S S ++ +
Sbjct: 126 ------QDSTLCLFTDFDSQINVPKTMESGTFITDKTVLDMKAMD----SKSNGAIAWSN 175
Query: 176 SGNYTC 181
++TC
Sbjct: 176 QTSFTC 181
>1u9k_A Triggering receptor expressed on myeloid cells 1; activating
receptors, TREM-1, innate immunity, immune system
receptor, immune system; 1.76A {Mus musculus} SCOP:
b.1.1.1
Length = 114
Score = 27.6 bits (62), Expect = 2.2
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 63 HVNISSVRVEDSGIYQC 79
V ++ ++V DSG+Y+C
Sbjct: 77 QVQMTDLQVTDSGLYRC 93
>1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein;
2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1
b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A
Length = 368
Score = 28.6 bits (64), Expect = 2.2
Identities = 13/124 (10%), Positives = 33/124 (26%), Gaps = 24/124 (19%)
Query: 11 QQTLQPGPPVSLKCIATGNPTPHISWK-----LDGYPLAGDRFVMGQYMSLHGDVISHVN 65
+Q P + + + W + GY + ++ H +
Sbjct: 181 RQKTGLDSPTGIDFSDITANSFTVHWIAPRATITGYRI--------RHHPEHFSGRPRED 232
Query: 66 ISSVRVEDSGI--------YQCT--ATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRS 115
+ Y + A N + + P+D+++V + S
Sbjct: 233 RVPHSRNSITLTNLTPGTEYVVSIVALNGREE-SPLLIGQQSTVSDVPRDLEVVAATPTS 291
Query: 116 IKVH 119
+ +
Sbjct: 292 LLIS 295
>2pkd_A SLAM family member 5; signaling lymphocyte activation molecule,
IGV, immunoglobulin variable, IGC, immunoglobulin
constant, signaling protein; 2.04A {Homo sapiens}
Length = 111
Score = 27.6 bits (61), Expect = 2.2
Identities = 17/77 (22%), Positives = 29/77 (37%), Gaps = 5/77 (6%)
Query: 163 TSSLSIATLSTGHSGNYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCV- 221
TS S+A ++ G S V TV N+ + +L I+ L +G+Y
Sbjct: 35 TSKTSVAYVTPGDSETAPVV---TVTHRNYYERIHALGPNYNLVISDLRMEDAGDYKADI 91
Query: 222 -ASNTVASDNHSSNLRV 237
+ NL++
Sbjct: 92 NTQADPYTTTKRYNLQI 108
Score = 27.2 bits (60), Expect = 2.6
Identities = 9/34 (26%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 66 ISSVRVEDSGIYQC--TATNRVGSQTHSADMRVY 97
IS +R+ED+G Y+ + T ++++Y
Sbjct: 76 ISDLRMEDAGDYKADINTQADPYTTTKRYNLQIY 109
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat
protein TRM82; S-adenosyl-L-methionine, tRNA processing,
phosphorylation, M7G, spout MT, WD repeat; 2.40A
{Saccharomyces cerevisiae}
Length = 450
Score = 28.9 bits (64), Expect = 2.3
Identities = 14/129 (10%), Positives = 36/129 (27%), Gaps = 15/129 (11%)
Query: 109 VTSNSRSIKVHSGDRAGVQCLVTKG-----DPPLTISWLKNGLPILS---DAEITIRSSG 160
+ +S+ V D+ L + P IS ++ ++ ++
Sbjct: 120 CADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDIN 179
Query: 161 EYTSSLSIATLSTGHSGNYTCVA-------SNTVASDNHSSNLRVNEYTSSLSIATLSTG 213
GH T V + + + +++++ Y + G
Sbjct: 180 SIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFG 239
Query: 214 HSGNYTCVA 222
H + +
Sbjct: 240 HKHFVSSIC 248
>1nko_A Sialic acid binding IG-like lectin 7; immunoglobulin, siglec7,
immune system; 1.45A {Homo sapiens} SCOP: b.1.1.1 PDB:
2g5r_A* 1o7v_A* 2df3_A* 1o7s_A* 2hrl_A*
Length = 132
Score = 27.6 bits (61), Expect = 2.4
Identities = 19/114 (16%), Positives = 33/114 (28%), Gaps = 25/114 (21%)
Query: 15 QPGPPVSLKCI-------ATGNPTPHISWKLDGYPLAGDRFVMG------------QYMS 55
Q G V ++C T + H W G ++ V
Sbjct: 19 QEGMCVHVRCSFSYPVDSDTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFH 78
Query: 56 LHGDVISH---VNISSVRVEDSGIYQCTATN---RVGSQTHSADMRVYDAPGQP 103
L GD + ++I R+ D+G Y + + + V +P
Sbjct: 79 LLGDPQTKNCTLSIRDARMSDAGRYFFRMEKGNIKWNYKYDQLSVNVTALTHRP 132
>3f7q_A Integrin beta-4, GP150; hemidesmosome, cell adhesion, carcinoma,
epidermolysis bullosa, alternative splicing, disease
mutation, glycoprotein; HET: 1PE PG4; 1.75A {Homo
sapiens} PDB: 3f7r_A 3f7p_C 1qg3_A
Length = 234
Score = 28.2 bits (63), Expect = 2.7
Identities = 19/121 (15%), Positives = 38/121 (31%), Gaps = 25/121 (20%)
Query: 16 PGPPVSLKCIATGNPTPHISW-----KLDGYPLAGDRFVMGQYMSLHGD--VISHVNISS 68
G P + A G+ H +W K GY + +Y ++
Sbjct: 6 LGAPQNPNAKAAGSRKIHFNWLPPSGKPMGYRV--------KYWIQGDSESEAHLLDSKV 57
Query: 69 VRVEDSGI-----YQCT--ATNRVGSQTHSADMRVY---DAPGQPQDVKLVTSNSRSIKV 118
VE + + Y+ A G +S+ + + P +P + +S ++
Sbjct: 58 PSVELTNLYPYCDYEMKVCAYGAQGEGPYSSLVSCRTHQEVPSEPGRLAFNVVSSTVTQL 117
Query: 119 H 119
Sbjct: 118 S 118
>3jts_B Beta-2-microglobulin; alpha helix, beta sheet, beta barrel, immune
response, MHC I membrane, transmembrane, disease
mutation; 2.80A {Homo sapiens}
Length = 119
Score = 27.3 bits (61), Expect = 2.8
Identities = 12/57 (21%), Positives = 20/57 (35%), Gaps = 2/57 (3%)
Query: 128 CLVTKGDPP-LTISWLKNGLPILSDAEITIRSSGEYT-SSLSIATLSTGHSGNYTCV 182
C V+ P + + LKNG I + S +++ L + Y C
Sbjct: 45 CYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACR 101
>1x5z_A Receptor-type tyrosine-protein phosphatase delta; fibronectin type
III domain containing protein, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 115
Score = 27.3 bits (61), Expect = 3.0
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 98 DAPGQPQDVKLVTSNSRSIKVH 119
PGQP + K + SI +
Sbjct: 16 GVPGQPLNFKAEPESETSILLS 37
>1wfn_A Sidekick 2; FN3, cell adhesion, structural genomics, riken
structural genomics/proteomics initiative, RSGI; NMR
{Homo sapiens} SCOP: b.1.2.1
Length = 119
Score = 27.4 bits (61), Expect = 3.0
Identities = 6/22 (27%), Positives = 8/22 (36%)
Query: 98 DAPGQPQDVKLVTSNSRSIKVH 119
D PG + S+KV
Sbjct: 16 DVPGPVGHLSFSEILDTSLKVS 37
>1fo0_A Protein (BM3.3 T cell receptor alpha-chain); class I MHC, H-2KB,
TCR-PMHC complex, immune system; 2.50A {Mus musculus}
SCOP: b.1.1.1 PDB: 1nam_A*
Length = 116
Score = 27.3 bits (61), Expect = 3.1
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 62 SHVNISSVRVEDSGIYQCTATNRVGSQT 89
+ I++ ++EDS +Y C G
Sbjct: 74 IGLIITATQIEDSAVYFCAMRGDYGGSG 101
>3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase,
conformationa thioester, adenylation,
transthioesterification, ATP-bindin nucleotide-binding;
2.70A {Saccharomyces cerevisiae}
Length = 1015
Score = 28.6 bits (63), Expect = 3.1
Identities = 12/83 (14%), Positives = 27/83 (32%), Gaps = 6/83 (7%)
Query: 178 NYTCVASNTVASDNHSSNLRVNEYTSSLSIATLSTGHSGNYTCV----ASNTVASDNHSS 233
+ V + + + +++NE+ S I +S+ G + D
Sbjct: 113 QFQVVVAT--DTVSLEDKVKINEFCHSSGIRFISSETRGLFGNTFVDLGDEFTVLDPTGE 170
Query: 234 NLRVNVPPHIGPFTFGELMEGVR 256
R + I P +++ R
Sbjct: 171 EPRTGMVSDIEPDGTVTMLDDNR 193
>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen,
beta-turn, immune system; HET: NLE; NMR {Rattus
norvegicus} SCOP: b.1.1.1 b.1.1.1
Length = 257
Score = 28.2 bits (63), Expect = 3.4
Identities = 26/152 (17%), Positives = 47/152 (30%), Gaps = 33/152 (21%)
Query: 66 ISSVRVEDSGIYQCTATNRVGSQTHSADMRVYD-----------------APGQPQDVKL 108
++S++ +D+G Y CT G + G
Sbjct: 82 MNSLQTDDTGTYYCTRDLYGGYPLGFWYFDFWGPGTMVTVSSGGGGSGGGGSGGGGSDIK 141
Query: 109 VTSNSRSIKVHSGDRAGVQCLVTK-------------GDPPLTISWLKNGLPILSDAEIT 155
+T + + GDR + C ++ G+ P + + N L +
Sbjct: 142 LTQSPSLLSASVGDRVTLSCKGSQNINNYLAWYQQKLGEAPKLLIYNTNSLQ--TGIPSR 199
Query: 156 IRSSGEYTS-SLSIATLSTGHSGNYTCVASNT 186
SG T +L+I++L Y C N
Sbjct: 200 FSGSGSGTDYTLTISSLQPEDVATYFCYQYNN 231
>1zox_A CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like
receptor, structural genomics, PSI, protein structure
initiative; 2.10A {Mus musculus}
Length = 113
Score = 27.0 bits (60), Expect = 3.7
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 64 VNISSVRVEDSGIYQC 79
V + +R+ D+GIY C
Sbjct: 76 VTMEDLRMSDAGIYWC 91
>1x5f_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 120
Score = 27.0 bits (60), Expect = 4.0
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 86 GSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKV 118
GS A P P+DV ++R IK+
Sbjct: 4 GSSGEHAPATTGPLPSAPRDVVASLVSTRFIKL 36
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF,
cofilin, structural genomics, PSI, protein structure
initiative; 1.70A {Caenorhabditis elegans} SCOP:
b.69.4.1 b.69.4.1 PDB: 1pev_A
Length = 611
Score = 27.9 bits (63), Expect = 4.3
Identities = 10/70 (14%), Positives = 21/70 (30%), Gaps = 11/70 (15%)
Query: 168 IATLSTGHSGNYTCVA----SNTVASDNHSSNLRV-NEYTSSLSIATLSTGHSGNYTCVA 222
T+ G + + S + + + N S+ GH+ T ++
Sbjct: 274 EKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSI-DQVR-YGHNKAITALS 331
Query: 223 ----SNTVAS 228
T+ S
Sbjct: 332 SSADGKTLFS 341
>2ol3_A BM3.3 T-cell receptor alpha-chain; T cell receptor, class I MHC,
H-2KBM8, TCR-PMHC complex, IMM system; HET: NAG; 2.90A
{Mus musculus} SCOP: b.1.1.1
Length = 142
Score = 26.9 bits (60), Expect = 4.5
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 62 SHVNISSVRVEDSGIYQCTATNRVGSQT 89
+ I++ ++EDS +Y C G
Sbjct: 74 IGLIITATQIEDSAVYFCAMRGDYGGSG 101
>1xed_A Polymeric-immunoglobulin receptor; IG-like fold, immune system;
1.90A {Homo sapiens} SCOP: b.1.1.1
Length = 117
Score = 26.8 bits (59), Expect = 4.6
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 64 VNISSVRVEDSGIYQC 79
VNI+ + +DSG Y+C
Sbjct: 77 VNIAQLSQDDSGRYKC 92
>3bp6_A Programmed cell death protein 1; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain,
membrane, transmembrane, receptor; 1.60A {Mus musculus}
PDB: 3rnk_A 3sbw_A 3bp5_A 1npu_A 3rnq_A
Length = 117
Score = 26.6 bits (59), Expect = 4.6
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 63 HVNISSVRVEDSGIYQCTATN 83
H+NI R DSGIY C A +
Sbjct: 74 HMNILDTRRNDSGIYLCGAIS 94
>2ed8_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 106
Score = 26.4 bits (59), Expect = 4.6
Identities = 5/22 (22%), Positives = 13/22 (59%)
Query: 98 DAPGQPQDVKLVTSNSRSIKVH 119
PG ++++ V+++ SI +
Sbjct: 6 SGPGPVENLQAVSTSPTSILIT 27
>1lp9_E T-cell receptor alpha chain; immunoregulatory complex, class I
MHC:TCR CO-crystal, immune; 2.00A {Mus musculus} SCOP:
b.1.1.1 b.1.1.2 PDB: 2j8u_E 2jcc_E 2uwe_E 1nfd_A*
Length = 194
Score = 27.3 bits (60), Expect = 5.1
Identities = 29/190 (15%), Positives = 56/190 (29%), Gaps = 31/190 (16%)
Query: 11 QQTLQPGPPVSLKCIATGNPTPHISWKLDGY---PLAGDRFVMGQYMSLH---------- 57
TL G PV L C +P + W Y + ++ +
Sbjct: 10 LVTLTEGLPVMLNCTYQSTYSPFLFW----YVQHLNEAPKLLLKSFTDNKRPEHQGFHAT 65
Query: 58 ---GDVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSR 114
H+ SS ++ DS +Y C S+ ++ G V N
Sbjct: 66 LHKSSSSFHLQKSSAQLSDSALYYCAL-----FLASSSFSKLVFGQGTSLSVVPNIQNPE 120
Query: 115 SIKVH---SGDRAGVQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEYTSSLSIATL 171
+ CL T D + + ++D + + + S+ +
Sbjct: 121 PAVYQLKDPRSQDSTLCLFTDFDSQINVPKTMESGTFITDKTVLDMKAMDSKSN---GAI 177
Query: 172 STGHSGNYTC 181
+ + ++TC
Sbjct: 178 AWSNQTSFTC 187
>2frg_P TREM-like transcript-1; immunoglobulin-like, beta-sandwich, cell
surface receptor, triggering receptor, platelet
receptor, ITIM, immune system; 1.19A {Homo sapiens}
Length = 106
Score = 26.4 bits (58), Expect = 5.5
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 64 VNISSVRVEDSGIYQCTATNRVGSQT 89
V + +++ ED+G Y C G Q
Sbjct: 70 VEMVTLQEEDAGEYGCMVDGARGPQI 95
>3lpw_A A77-A78 domain from titin; intracellular FNIII-tandem, structural
protein; 1.65A {Homo sapiens}
Length = 197
Score = 26.9 bits (60), Expect = 6.2
Identities = 8/44 (18%), Positives = 18/44 (40%), Gaps = 5/44 (11%)
Query: 80 TATNRVG----SQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVH 119
A N G ++T + ++ + P P + L+ S+ +
Sbjct: 80 LAENEYGIGLPAET-AESVKASERPLPPGKITLMDVTRNSVSLS 122
>3p4l_A Neogenin; iron homeostasis, hemojuvelin receptor, FNIII domain,
fibron type III, cell adhesion; 1.80A {Homo sapiens}
PDB: 1x5k_A
Length = 211
Score = 27.1 bits (60), Expect = 6.2
Identities = 20/123 (16%), Positives = 36/123 (29%), Gaps = 19/123 (15%)
Query: 16 PGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQY------MSLHGDVISHVNISSV 69
PPV ++ + T I+W + P Y + N +++
Sbjct: 5 MMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNANATTL 64
Query: 70 RVEDSGI-----YQCT--ATNRVGSQTHSADMRVY---DAPGQP---QDVKLVTSNSRSI 116
+G+ Y+ + T S T S P P V ++I
Sbjct: 65 SYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGTTFELVPTSPPKDVTVVSKEGKPKTI 124
Query: 117 KVH 119
V+
Sbjct: 125 IVN 127
>3g8q_A Predicted RNA-binding protein, contains thump domain; cytidine
deaminase, ferredoxin-like domain; 2.40A {Methanopyrus
kandleri}
Length = 278
Score = 27.4 bits (60), Expect = 6.3
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 126 VQCLVTKGDPPLTISWLKNGLPILSDAEITIRSSGEY 162
V+ +VT+GDP + LK LP+ I SGE+
Sbjct: 165 VEIMVTRGDPDEAVELLKEELPVFRIRRFLI--SGEF 199
>1t7v_A Zinc-alpha-2-glycoprotein; MHC class I homolog, PEG, lipid binding
protein; HET: NAG P6G; 1.95A {Homo sapiens} SCOP:
b.1.1.2 d.19.1.1 PDB: 1t7w_A* 1t7x_A* 1t7y_A* 1t7z_A*
1t80_A* 2icn_A* 3es6_A* 1zag_A*
Length = 278
Score = 27.2 bits (61), Expect = 6.4
Identities = 6/46 (13%), Positives = 15/46 (32%), Gaps = 1/46 (2%)
Query: 138 TISWLKNGLPILSDAEITIRSSGEYTSSLSIA-TLSTGHSGNYTCV 182
+ W + G + + +G T + + + Y+C
Sbjct: 216 DVHWTRAGEVQEPELRGDVLHNGNGTYQSWVVVAVPPQDTAPYSCH 261
>1x5g_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 116
Score = 26.1 bits (58), Expect = 6.7
Identities = 5/22 (22%), Positives = 10/22 (45%)
Query: 98 DAPGQPQDVKLVTSNSRSIKVH 119
PG +++ ++ SI V
Sbjct: 16 QLPGPAPNLRAYAASPTSITVT 37
>1ntl_A CRRY-IG; immunology, complement, glycoprotein, SCR, CCP, immune
system; NMR {Mus musculus}
Length = 551
Score = 27.3 bits (60), Expect = 7.0
Identities = 23/168 (13%), Positives = 56/168 (33%), Gaps = 9/168 (5%)
Query: 21 SLKCIATGNPTPHISWKLD-GYPLAGDRFVMGQYMSLHGDVISHVNISSVRVEDSGIYQC 79
+ I+ +P SW +D + + +S + I + ++C
Sbjct: 366 VVVDISKDDPEVQFSWFVDDVEVHTAQTQPREEQFNSTFRSVSELPIMHQDWLNGKEFKC 425
Query: 80 TATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVHSGDRAGVQCLVTKGDPP-LT 138
+ + + + + + + D+ + C++T P +T
Sbjct: 426 RVNSAAFPAPIEKTISKTKGRPKAPQLYTIPPPKEQM---AKDKVSLTCMITDFFPEDIT 482
Query: 139 ISWLKNGLPIL--SDAEITIRSSGEY--TSSLSIATLSTGHSGNYTCV 182
+ W NG P + + + ++G Y S L++ + +TC
Sbjct: 483 VEWQWNGQPAENYKNTQPIMNTNGSYFVYSKLNVQKSNWEAGNTFTCS 530
>3bik_B Programmed cell death protein 1; CO-stimulation, receptor-ligand
complex, immunoglobulin-like sandwich, T cell, B cell,
programmed death; 2.65A {Mus musculus} SCOP: b.1.1.1
Length = 134
Score = 26.3 bits (58), Expect = 7.3
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 62 SHVNISSVRVEDSGIYQCTATN 83
H+NI R DSGIY C A +
Sbjct: 83 FHMNILDTRRNDSGIYLCGAIS 104
>3khq_A B-cell antigen receptor complex-associated protei chain; CD79B,
CD79A, IG-beta, BCR, IG domain, V-SET, immunoglobulin
protein binding; HET: FLC GSH; 1.70A {Mus musculus}
PDB: 3kho_A*
Length = 133
Score = 26.1 bits (58), Expect = 7.6
Identities = 7/14 (50%), Positives = 11/14 (78%)
Query: 66 ISSVRVEDSGIYQC 79
I +++ ED+GIY C
Sbjct: 81 IQNIQYEDNGIYFC 94
>1x5l_A Ephrin type-A receptor 8; FN3 domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 111
Score = 25.8 bits (57), Expect = 7.8
Identities = 4/22 (18%), Positives = 9/22 (40%)
Query: 98 DAPGQPQDVKLVTSNSRSIKVH 119
AP Q ++ + S+ +
Sbjct: 9 AAPSQVVVIRQERAGQTSVSLL 30
>1h5b_A Murine T cell receptor (TCR) valpha domain; immune response,
immunoglobulin fold; 1.85A {Mus musculus} SCOP: b.1.1.1
PDB: 1h5b_C 1h5b_B
Length = 113
Score = 26.1 bits (58), Expect = 7.8
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 62 SHVNISSVRVEDSGIYQCTATNRVGSQ 88
S ++I ++EDSG Y C A GS
Sbjct: 71 STLHIRDAQLEDSGTYFCAAEASSGSW 97
>3lh2_H FV 4E10 heavy chain; epitope-scaffold, immune system; 2.65A {Homo
sapiens} PDB: 3h3p_H 3lhp_H 2xtj_D
Length = 137
Score = 26.4 bits (59), Expect = 7.8
Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 13/67 (19%)
Query: 53 YMSLHGDVISHVNISSVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSN 112
Y+ L +S+R ED+ +Y C G+ + + GQ LVT +
Sbjct: 82 YLEL----------NSLRPEDTAVYYCAREGTTGAGWLGKPIGAFAHWGQG---TLVTVS 128
Query: 113 SRSIKVH 119
S H
Sbjct: 129 SLEHHHH 135
>1zvy_A Immunoglobulin heavy chain antibody variable DOMA; beta sandwich,
immunoglobulin fold, protein protein heteroco alpha-beta
orthogonal bundle, hydrolase-immune system compl; 1.63A
{Camelus dromedarius} SCOP: b.1.1.1
Length = 136
Score = 26.3 bits (59), Expect = 8.0
Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 68 SVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVH 119
SV+ ED+ IY C AT + + D YD GQ VT +SR H
Sbjct: 85 SVKSEDTAIYTCGATRKYVPVRFALDQSSYDYWGQG---TQVTVSSRGRHHH 133
>2z35_A T-cell receptor alpha-chain; immune receptor, immune system;
2.20A {Mus musculus} PDB: 2pxy_A 2z31_A 1ac6_A
Length = 112
Score = 26.1 bits (58), Expect = 8.0
Identities = 16/88 (18%), Positives = 31/88 (35%), Gaps = 14/88 (15%)
Query: 13 TLQPGPPVSLKCIATGNPTPHISWKLDGYPLAGDRFVMGQYMSLHGDVIS---------- 62
L +++ C + + P + W + YP G +F+
Sbjct: 11 ALSEEDFLTIHCNYSASGYPALFWYVQ-YPGEGPQFLFRASRDKEKGSSRGFEATYNKEA 69
Query: 63 ---HVNISSVRVEDSGIYQCTATNRVGS 87
H+ +SV+ DS +Y C + G+
Sbjct: 70 TSFHLQKASVQESDSAVYYCALSENYGN 97
>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked
with A synthetic...; single-chain FV, monoclonal
antibody, immunoglobulin; 1.30A {Mus musculus} PDB:
3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*
Length = 250
Score = 26.8 bits (60), Expect = 8.6
Identities = 20/99 (20%), Positives = 31/99 (31%), Gaps = 33/99 (33%)
Query: 7 YKFIQQTLQPGP-------PVSLKCIATGNPTPHISW---------KLDGYPLAG----- 45
YK I V++ C A+ + +++W KL Y +
Sbjct: 2 YKDIVLIQSTSSLSASLGDRVTISCRASQDIRNYLNWYQQKPDGTVKLLIYYTSRLQSGV 61
Query: 46 -DRFVMGQYMSLHGDVIS---HVNISSVRVEDSGIYQCT 80
RF G + IS++ ED G Y C
Sbjct: 62 PSRFS--------GSGSGTDYSLTISNLEQEDIGTYFCQ 92
>1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins,
protein-protein interactions, C-type lectin domain;
2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1
Length = 283
Score = 26.7 bits (59), Expect = 8.7
Identities = 20/128 (15%), Positives = 39/128 (30%), Gaps = 28/128 (21%)
Query: 10 IQQTLQPGPPVSLKCIATGNPTPHISWK-----LDGY-----PLAGDRFVMGQYMSLHGD 59
Q T + P +L+ + + + W Y LAG+++ G
Sbjct: 99 TQFTTEIDAPKNLRVGSRTATSLDLEWDNSEAEAQEYKVVYSTLAGEQYHEVLVPKGIGP 158
Query: 60 VISHVNIS--------SVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTS 111
++ V + +A Q+ A M P+D+ + S
Sbjct: 159 TTKTT-LTDLVPGTEYGVGI--------SAVMNSK-QSIPATMNARTELDSPRDLMVTAS 208
Query: 112 NSRSIKVH 119
+ SI +
Sbjct: 209 SETSISLI 216
>3rrq_A Protein PD-1, programmed cell death protein 1; programmed death-1,
costimulatory, immune system; 2.10A {Homo sapiens}
Length = 129
Score = 26.1 bits (58), Expect = 8.9
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 62 SHVNISSVRVEDSGIYQCTATNRVGSQT 89
H+++ R DSG Y C A +
Sbjct: 75 FHMSVVRARRNDSGTYLCGAISLAPKLQ 102
>3moq_A NEW antigen receptor variable domain, P3(40) PEPT amyloid beta A4
protein; AB-ignar, AB-12Y-2, glycoprotein, membran
protease inhibitor; 2.05A {Orectolobus maculatus} PDB:
2z8w_C 2z8v_C 1ves_A 1ver_A
Length = 126
Score = 25.9 bits (57), Expect = 9.0
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 66 ISSVRVEDSGIYQCTATNRVGSQT 89
IS +RVEDSG Y+C A ++
Sbjct: 70 ISDLRVEDSGTYKCQAFYVFFAED 93
>1s7q_A H-2KB, H-2 class I histocompatibility antigen, K-B alpha chain;
LCMV, MHC class I, immune escape, immune system; 1.99A
{Mus musculus} SCOP: b.1.1.2 d.19.1.1 PDB: 1s7r_A 1s7s_A
1s7t_A 1bii_A 3qul_A 1s7v_A 1s7w_A 1s7x_A 3quk_A 1s7u_A
1nez_A*
Length = 348
Score = 26.7 bits (59), Expect = 9.2
Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 117 KVHSGDRAGVQCLVTKGDP-PLTISWLKNGLPILSDAE-ITIRSSGEYTSSLSIA-TLST 173
D+ ++C P +T++W NG ++ D E + R +G+ T + +
Sbjct: 192 HSRPEDKVTLRCWALGFYPADITLTWQLNGEELIQDMELVETRPAGDGTFQKWASVVVPL 251
Query: 174 GHSGNYTCV 182
G YTC
Sbjct: 252 GKEQYYTCH 260
>2c9a_A Receptor-type tyrosine-protein phosphatase MU; glycoprotein,
hydrolase, immunoglobulin domain; HET: NAG MAN NDG FUL;
2.7A {Homo sapiens} SCOP: b.1.1.4 b.29.1.25
Length = 259
Score = 26.8 bits (58), Expect = 9.8
Identities = 17/86 (19%), Positives = 34/86 (39%), Gaps = 2/86 (2%)
Query: 115 SIKVHSGDRAGVQCLVTKGDPPLTISWL-KNGLPILSDAEITIRSSGEYTSSLSIATLST 173
+++V++G A QC WL + EI + SS + +S ++ +
Sbjct: 173 NVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTK 232
Query: 174 GHSGNYTCVASNTVAS-DNHSSNLRV 198
+G Y C+ ++ + L V
Sbjct: 233 RDAGKYRCMIRTEGGVGISNYAELVV 258
>4esk_A LAIR-1, mlair1, leukocyte-associated immunoglobulin-like receptor;
IG-like domain, domain swapping, collagen receptor,
structural genomics; 1.76A {Mus musculus}
Length = 102
Score = 25.4 bits (56), Expect = 9.9
Identities = 10/65 (15%), Positives = 21/65 (32%), Gaps = 5/65 (7%)
Query: 118 VHSGDRAGVQCLVTKGDPPLTISWL-KNGLPILSDAEITIRSSGEYTSSLSIATLSTGHS 176
+ G V C + + L K+G + + I ++ +
Sbjct: 20 ISQGTFVTVVCSYSDKHDLYNMVRLEKDGSTFMEK----STEPYKTEDEFEIGPVNETIT 75
Query: 177 GNYTC 181
G+Y+C
Sbjct: 76 GHYSC 80
>3k3q_A Llama AA1 VHH domain; llama, VHH, antibody, BONT, cell junction,
cell membrane, cytoplasm, disulfide bond, hydrolase;
2.60A {Lama glama}
Length = 151
Score = 26.1 bits (58), Expect = 10.0
Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
Query: 68 SVRVEDSGIYQCTATNRVGSQTHSADMRVYDAPGQPQDVKLVTSNSRSIKVH 119
+VR++D+ Y C A + + + D GQ LVT +S + H
Sbjct: 99 NVRLDDTASYYC-AADEDVTPRVMGVIPHADHWGQG---TLVTVSSAAALEH 146
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.129 0.384
Gapped
Lambda K H
0.267 0.0526 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,144,938
Number of extensions: 233219
Number of successful extensions: 2826
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1704
Number of HSP's successfully gapped: 1062
Length of query: 291
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 198
Effective length of database: 4,105,140
Effective search space: 812817720
Effective search space used: 812817720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 57 (26.2 bits)