BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14541
(103 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9V6Y3|RT16_DROME Probable 28S ribosomal protein S16, mitochondrial OS=Drosophila
melanogaster GN=mRpS16 PE=2 SV=1
Length = 129
Score = 105 bits (262), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 51/82 (62%), Positives = 62/82 (75%), Gaps = 3/82 (3%)
Query: 6 QP-IEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGLAGLFPIYHRT 64
QP IEQ+G+FDPLPN+Y E+LV+LN ERIRYWLG H+++P EL G+AGL PI+ RT
Sbjct: 46 QPVIEQVGSFDPLPNDYNERLVALNTERIRYWLG-KGAHLSTPAAELLGIAGLLPIHPRT 104
Query: 65 YMNAWRN-RNKAEAEIEKQKQE 85
YM AWRN R AEAE +K E
Sbjct: 105 YMTAWRNRRTAAEAEASPEKAE 126
>sp|Q10129|RT16_CAEEL Probable 28S ribosomal protein S16, mitochondrial OS=Caenorhabditis
elegans GN=F56D1.3 PE=3 SV=2
Length = 147
Score = 85.9 bits (211), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 36/65 (55%), Positives = 51/65 (78%)
Query: 8 IEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGLAGLFPIYHRTYMN 67
+EQ+GTFDPLPN+ EKLV+LN R++YW+G + HI+ PV EL GL+GLFPI+ ++++
Sbjct: 47 LEQVGTFDPLPNQKNEKLVALNFGRLKYWIGERNAHISVPVLELLGLSGLFPIHPKSFIR 106
Query: 68 AWRNR 72
A NR
Sbjct: 107 AKDNR 111
>sp|P82915|RT16_BOVIN 28S ribosomal protein S16, mitochondrial OS=Bos taurus GN=MRPS16
PE=1 SV=2
Length = 135
Score = 85.5 bits (210), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 41/96 (42%), Positives = 62/96 (64%), Gaps = 4/96 (4%)
Query: 3 RNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGLAGLFPIYH 62
R+ + +EQLG++DP+PN + EKLV+LN++RIR+W+G H++ PV +L GL+G FP++
Sbjct: 43 RDGRFVEQLGSYDPMPNSHGEKLVALNLDRIRHWIGCGA-HLSKPVEKLLGLSGFFPLHP 101
Query: 63 RTYMNAWRNRNKAEAEIEKQKQEKLKAEQEANQDKE 98
NA R R K E+ Q K + EA + KE
Sbjct: 102 MVITNAERLRRKRAQEVLLAAQ---KTDTEATETKE 134
>sp|Q5REY4|RT16_PONAB 28S ribosomal protein S16, mitochondrial OS=Pongo abelii GN=MRPS16
PE=2 SV=1
Length = 137
Score = 84.0 bits (206), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 43/100 (43%), Positives = 63/100 (63%), Gaps = 5/100 (5%)
Query: 3 RNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGLAGLFPIYH 62
R+ + +EQLG++DPLPN + EKLV+LN++RIR+W+G H++ P+ +L GLAG FP++
Sbjct: 43 RDGRFVEQLGSYDPLPNSHGEKLVALNLDRIRHWIGCGA-HLSKPMEKLLGLAGFFPLHP 101
Query: 63 RTYMNAWRNRNKAEAEIEKQKQEKLKAEQEANQDKEAASS 102
NA R R K E+ Q K + EA D EA +
Sbjct: 102 MMITNAERLRRKLAREVLLASQ---KTDAEAT-DAEATET 137
>sp|Q9Y3D3|RT16_HUMAN 28S ribosomal protein S16, mitochondrial OS=Homo sapiens GN=MRPS16
PE=1 SV=1
Length = 137
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 43/100 (43%), Positives = 63/100 (63%), Gaps = 5/100 (5%)
Query: 3 RNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGLAGLFPIYH 62
R+ + +EQLG++DPLPN + EKLV+LN++RIR+W+G H++ P+ +L GLAG FP++
Sbjct: 43 RDGRFVEQLGSYDPLPNSHGEKLVALNLDRIRHWIGCG-AHLSKPMEKLLGLAGFFPLHP 101
Query: 63 RTYMNAWRNRNKAEAEIEKQKQEKLKAEQEANQDKEAASS 102
NA R R K E+ Q K + EA D EA +
Sbjct: 102 MMITNAERLRRKRAREVLLASQ---KTDAEAT-DTEATET 137
>sp|Q9CPX7|RT16_MOUSE 28S ribosomal protein S16, mitochondrial OS=Mus musculus GN=Mrps16
PE=2 SV=1
Length = 135
Score = 75.5 bits (184), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 40/97 (41%), Positives = 63/97 (64%), Gaps = 4/97 (4%)
Query: 3 RNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGLAGLFPIYH 62
R+ + +EQLG++DPLPN + EKLV+LN++RIR+W+G H++ P+ +L GL+G FP++
Sbjct: 43 RDGRFVEQLGSYDPLPNSHGEKLVALNLDRIRHWIGCGA-HLSKPMEKLLGLSGFFPLHP 101
Query: 63 RTYMNAWRNRNKAEAEIEKQKQEKLKAEQEANQDKEA 99
NA R R + E+ Q KAE EA + + +
Sbjct: 102 MMITNAERLRRRRAREVLLASQ---KAESEAKETEAS 135
>sp|Q2RV59|RS16_RHORT 30S ribosomal protein S16 OS=Rhodospirillum rubrum (strain ATCC
11170 / NCIB 8255) GN=rpsP PE=3 SV=1
Length = 124
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 3 RNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGLAGL 57
R+ + IE+LGTFDP+ E+ V L ER++YWLG + + V GL+GL
Sbjct: 29 RDGRFIEKLGTFDPMLPRDHERRVVLKDERVKYWLGVGALP-SDRVARFLGLSGL 82
>sp|A1B8V3|RS16_PARDP 30S ribosomal protein S16 OS=Paracoccus denitrificans (strain Pd
1222) GN=rpsP PE=3 SV=1
Length = 124
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 28/38 (73%)
Query: 1 MRRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLG 38
M R+ + IE+LGT++PL + E + +N+ER++YWLG
Sbjct: 27 MPRDGRFIEKLGTYNPLLPKDSEDRIKMNLERVQYWLG 64
>sp|Q16AN8|RS16_ROSDO 30S ribosomal protein S16 OS=Roseobacter denitrificans (strain
ATCC 33942 / OCh 114) GN=rpsP PE=3 SV=1
Length = 122
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 1 MRRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGLAGL 57
M R+ + IE+LGT++PL + E+ V ++ ER++YWLG T V + AGL
Sbjct: 27 MPRDGRFIEKLGTYNPLLPKDSEERVKMDAERVQYWLGQG-AQPTDRVARMLEAAGL 82
>sp|P08580|RT16_NEUCR Ribosomal protein S16, mitochondrial OS=Neurospora crassa (strain
ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC
987) GN=cyt-21 PE=3 SV=2
Length = 107
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 8/63 (12%)
Query: 3 RNDQPIEQLGTFDPLP--NEYQ-----EKLVSLNIERIRYWLGTSDIHITSPVRELFGLA 55
RN +P+E +GT+DP+P + Y K + L++ R +YW+G T V L L
Sbjct: 29 RNSKPLEVIGTYDPVPKKDTYDTTGKLHKDIKLDVTRAKYWIGVG-AQPTDTVWRLLSLV 87
Query: 56 GLF 58
G+
Sbjct: 88 GIL 90
>sp|A8LMC0|RS16_DINSH 30S ribosomal protein S16 OS=Dinoroseobacter shibae (strain DFL
12) GN=rpsP PE=3 SV=1
Length = 130
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 28/38 (73%)
Query: 1 MRRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLG 38
M R+ + IE+LGT++PL + E V +++ER++YWLG
Sbjct: 27 MPRDGRFIEKLGTYNPLLPKDSEDRVKMDLERVQYWLG 64
>sp|Q5LNF2|RS16_RUEPO 30S ribosomal protein S16 OS=Ruegeria pomeroyi (strain ATCC
700808 / DSM 15171 / DSS-3) GN=rpsP PE=3 SV=1
Length = 121
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 1 MRRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGLAGLFPI 60
M R+ + IE+LGT++PL + E+ V +++ER++YWL + T V + AG+
Sbjct: 27 MPRDGRFIEKLGTYNPLLPKDSEERVKMDVERVQYWL-SQGAQTTDRVARMLEAAGVVGK 85
Query: 61 YHRTYMN 67
R+ N
Sbjct: 86 TERSNPN 92
>sp|A4WNX7|RS16_RHOS5 30S ribosomal protein S16 OS=Rhodobacter sphaeroides (strain ATCC
17025 / ATH 2.4.3) GN=rpsP PE=3 SV=1
Length = 116
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 1 MRRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGLAGL 57
M R+ + +E+LGT++PL + E + +N+ER++YWL + T V AGL
Sbjct: 27 MPRDGRFLEKLGTYNPLLAKDSEDRIKMNVERVQYWL-SQGAQPTDRVARFLEAAGL 82
>sp|B1GZ23|RS16_UNCTG 30S ribosomal protein S16 OS=Uncultured termite group 1 bacterium
phylotype Rs-D17 GN=rpsP PE=3 SV=1
Length = 84
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 26/39 (66%), Gaps = 3/39 (7%)
Query: 2 RRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTS 40
+R+ +PIE LG +DP+ + + K+ NIERI YWLG
Sbjct: 28 KRDGEPIEILGQYDPIAEDNKFKV---NIERINYWLGIG 63
>sp|O43020|RT16_SCHPO Probable 37S ribosomal protein S16, mitochondrial
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=mrps16 PE=3 SV=2
Length = 96
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 7/42 (16%)
Query: 6 QPIEQLGTFDPLPNEYQE-------KLVSLNIERIRYWLGTS 40
+PIE +GTFDP+P + K + LN+ER +YW+
Sbjct: 32 KPIETIGTFDPIPKKIDSQDSIPRIKDIQLNVERFKYWISVG 73
>sp|Q3IZ02|RS16_RHOS4 30S ribosomal protein S16 OS=Rhodobacter sphaeroides (strain ATCC
17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=rpsP PE=3 SV=1
Length = 116
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 1 MRRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGLAGL 57
M R+ + +E+LGT++PL + E + +N+ER++YWL T V AGL
Sbjct: 27 MPRDGRFLEKLGTYNPLLAKDSEDRIKMNLERVQYWLAQG-AQPTDRVARFLEAAGL 82
>sp|A3PN95|RS16_RHOS1 30S ribosomal protein S16 OS=Rhodobacter sphaeroides (strain ATCC
17029 / ATH 2.4.9) GN=rpsP PE=3 SV=1
Length = 116
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 1 MRRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGLAGL 57
M R+ + +E+LGT++PL + E + +N+ER++YWL T V AGL
Sbjct: 27 MPRDGRFLEKLGTYNPLLAKDSEDRIKMNLERVQYWLAQG-AQPTDRVARFLEAAGL 82
>sp|Q47S67|RS16_THEFY 30S ribosomal protein S16 OS=Thermobifida fusca (strain YX)
GN=rpsP PE=3 SV=1
Length = 146
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 2 RRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGLAG 56
+R+ + IE++G + P + + L+ +N ER++YWL T PVR + L G
Sbjct: 28 KRDGKAIEEIGKYHP---KEEPSLIEVNSERVQYWLSVG-AQPTDPVRHILKLTG 78
>sp|Q2GES3|RS16_NEOSM 30S ribosomal protein S16 OS=Neorickettsia sennetsu (strain
Miyayama) GN=rpsP PE=3 SV=1
Length = 85
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 25/34 (73%)
Query: 3 RNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYW 36
R+ + +EQ+G++DPL ++ V L+IERIRYW
Sbjct: 34 RDGKFLEQVGSYDPLLSKDDPLRVCLDIERIRYW 67
>sp|A0LV73|RS16_ACIC1 30S ribosomal protein S16 OS=Acidothermus cellulolyticus (strain
ATCC 43068 / 11B) GN=rpsP PE=3 SV=1
Length = 174
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 2 RRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGLAG 56
+R+ + IE++G +DP + + L+ +N ER+ YWL T PV+ L + G
Sbjct: 28 KRDGRAIEEIGQYDP---KQEPSLIRVNSERVAYWLSVG-AQPTEPVKALLKVTG 78
>sp|Q7NRV5|RS16_CHRVO 30S ribosomal protein S16 OS=Chromobacterium violaceum (strain
ATCC 12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB
9131 / NCTC 9757) GN=rpsP PE=3 SV=1
Length = 83
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Query: 2 RRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTS 40
RR+ + IE++G ++P+ NE QE+ V ++R+ YW+G
Sbjct: 27 RRDGRFIERVGFYNPVANEKQER-VRFTMDRLNYWVGVG 64
>sp|Q4FP12|RS16_PELUB 30S ribosomal protein S16 OS=Pelagibacter ubique (strain
HTCC1062) GN=rpsP PE=3 SV=1
Length = 177
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 3 RNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGLAGLF 58
R+ + IE++G F+PL + +++ V L ERI+YWLG T+ V + G G+
Sbjct: 28 RDGRFIEKVGFFNPLLPKDKKERVGLEAERIKYWLGQG-AQPTTRVARILGENGII 82
>sp|Q2G8H4|RS16_NOVAD 30S ribosomal protein S16 OS=Novosphingobium aromaticivorans
(strain DSM 12444) GN=rpsP PE=3 SV=1
Length = 145
Score = 36.6 bits (83), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 3 RNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGLAGL 57
R+ + +EQ+GT++PL + E V L +R+RYW+G T V + AG+
Sbjct: 29 RDGKYLEQVGTYNPLLAKDDENRVRLIEDRVRYWIGVG-AQPTDRVARMLDKAGI 82
>sp|Q28UE6|RS16_JANSC 30S ribosomal protein S16 OS=Jannaschia sp. (strain CCS1) GN=rpsP
PE=3 SV=1
Length = 130
Score = 36.6 bits (83), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 1 MRRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGLAGLFPI 60
M R+ + IE+LGT++PL + E V +++ER+++WL T + AG P
Sbjct: 27 MPRDGRFIEKLGTYNPLLPKDSEDRVKMDMERVQHWLDQG-AQPTDRISRFLEAAGHTPK 85
Query: 61 YHRTYMNAWRNRNKA 75
R M + KA
Sbjct: 86 KERANMKKAQPGKKA 100
>sp|A8GU56|RS16_RICRS 30S ribosomal protein S16 OS=Rickettsia rickettsii (strain Sheila
Smith) GN=rpsP PE=3 SV=1
Length = 111
Score = 36.2 bits (82), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 23/38 (60%)
Query: 3 RNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTS 40
R+ +E++GT+DP+ + V L +RI YWLGT
Sbjct: 29 RDGDFLEKVGTYDPMLASDNSERVVLKKDRIEYWLGTG 66
>sp|B0BVP5|RS16_RICRO 30S ribosomal protein S16 OS=Rickettsia rickettsii (strain Iowa)
GN=rpsP PE=3 SV=1
Length = 111
Score = 36.2 bits (82), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 23/38 (60%)
Query: 3 RNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTS 40
R+ +E++GT+DP+ + V L +RI YWLGT
Sbjct: 29 RDGDFLEKVGTYDPMLASDNSERVVLKKDRIEYWLGTG 66
>sp|C4K2Y3|RS16_RICPU 30S ribosomal protein S16 OS=Rickettsia peacockii (strain Rustic)
GN=rpsP PE=3 SV=1
Length = 111
Score = 36.2 bits (82), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 23/38 (60%)
Query: 3 RNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTS 40
R+ +E++GT+DP+ + V L +RI YWLGT
Sbjct: 29 RDGDFLEKVGTYDPMLASDNSERVVLKKDRIEYWLGTG 66
>sp|Q92FW8|RS16_RICCN 30S ribosomal protein S16 OS=Rickettsia conorii (strain ATCC
VR-613 / Malish 7) GN=rpsP PE=3 SV=1
Length = 111
Score = 36.2 bits (82), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 23/38 (60%)
Query: 3 RNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTS 40
R+ +E++GT+DP+ + V L +RI YWLGT
Sbjct: 29 RDGDFLEKVGTYDPMLASDNSERVVLKKDRIEYWLGTG 66
>sp|C3PM20|RS16_RICAE 30S ribosomal protein S16 OS=Rickettsia africae (strain ESF-5)
GN=rpsP PE=3 SV=1
Length = 111
Score = 36.2 bits (82), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 23/38 (60%)
Query: 3 RNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTS 40
R+ +E++GT+DP+ + V L +RI YWLGT
Sbjct: 29 RDGDFLEKVGTYDPMLASDNSERVVLKKDRIEYWLGTG 66
>sp|Q6F0S3|RS16_MESFL 30S ribosomal protein S16 OS=Mesoplasma florum (strain ATCC 33453
/ NBRC 100688 / NCTC 11704 / L1) GN=rpsP PE=3 SV=1
Length = 89
Score = 36.2 bits (82), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 29/60 (48%), Gaps = 6/60 (10%)
Query: 3 RNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGLAGLFPIYH 62
RN Q IE +GTFDPL +E V +N E WL + T VREL G+ H
Sbjct: 28 RNGQYIELIGTFDPLKSE-----VKINNELALKWL-QNGAQPTETVRELLSQQGVMKALH 81
>sp|Q319K4|RS16_PROM9 30S ribosomal protein S16 OS=Prochlorococcus marinus (strain MIT
9312) GN=rpsP PE=3 SV=1
Length = 121
Score = 35.8 bits (81), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 47/102 (46%), Gaps = 12/102 (11%)
Query: 2 RRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGLAGLFPIY 61
RR+ +P+++LG ++P E + LN E +R L T T VR L GL
Sbjct: 27 RRDGRPLQELGFYNPRTKETR-----LNTEALRIRL-TQGAQPTDVVRNLLEKGGLLEKK 80
Query: 62 HRTYMNAWRNRNKAEAEIEKQKQEKLKAEQEANQDKEAASSA 103
R + + A++EK+K K K + E N +A S +
Sbjct: 81 ERPSIAIGK------AKLEKEKVAKAKIKNEENDSSKAESDS 116
>sp|Q2GLR4|RS16_ANAPZ 30S ribosomal protein S16 OS=Anaplasma phagocytophilum (strain
HZ) GN=rpsP PE=3 SV=1
Length = 96
Score = 35.8 bits (81), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 24/40 (60%)
Query: 1 MRRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTS 40
++R+ + IEQ+G ++P+ + +N ER+ YWLG
Sbjct: 27 VQRDGKCIEQIGFYNPMVECGAPGFLKVNAERLGYWLGVG 66
>sp|Q7UI12|RS16_RHOBA 30S ribosomal protein S16 OS=Rhodopirellula baltica (strain SH1)
GN=rpsP PE=3 SV=1
Length = 146
Score = 35.4 bits (80), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 3 RNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTS 40
R+ + IE+LGT+DP+ E + +L +R+ YW+G
Sbjct: 29 RDGRVIEELGTYDPMCPETDAR-TTLKADRVDYWIGVG 65
>sp|C4LD27|RS16_TOLAT 30S ribosomal protein S16 OS=Tolumonas auensis (strain DSM 9187 /
TA4) GN=rpsP PE=3 SV=1
Length = 82
Score = 35.4 bits (80), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 27/36 (75%), Gaps = 1/36 (2%)
Query: 3 RNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLG 38
R+ + IE++G F+PL EK V+L++ERI++W+G
Sbjct: 28 RDGRFIERVGFFNPLAAGQAEK-VNLDLERIQHWVG 62
>sp|A1KSK1|RS16_NEIMF 30S ribosomal protein S16 OS=Neisseria meningitidis serogroup C /
serotype 2a (strain ATCC 700532 / FAM18) GN=rpsP PE=3
SV=1
Length = 81
Score = 35.4 bits (80), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 2 RRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLG 38
RR+ + IE++G ++P+ NE QE+ V LN +R+ +W+
Sbjct: 27 RRDGRFIERVGFYNPVANEKQER-VRLNADRLNHWIA 62
>sp|P66438|RS16_NEIMB 30S ribosomal protein S16 OS=Neisseria meningitidis serogroup B
(strain MC58) GN=rpsP PE=3 SV=1
Length = 81
Score = 35.4 bits (80), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 2 RRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLG 38
RR+ + IE++G ++P+ NE QE+ V LN +R+ +W+
Sbjct: 27 RRDGRFIERVGFYNPVANEKQER-VRLNADRLNHWIA 62
>sp|P66437|RS16_NEIMA 30S ribosomal protein S16 OS=Neisseria meningitidis serogroup A /
serotype 4A (strain Z2491) GN=rpsP PE=3 SV=1
Length = 81
Score = 35.4 bits (80), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 2 RRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLG 38
RR+ + IE++G ++P+ NE QE+ V LN +R+ +W+
Sbjct: 27 RRDGRFIERVGFYNPVANEKQER-VRLNADRLNHWIA 62
>sp|A9M2D3|RS16_NEIM0 30S ribosomal protein S16 OS=Neisseria meningitidis serogroup C
(strain 053442) GN=rpsP PE=3 SV=1
Length = 81
Score = 35.4 bits (80), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 2 RRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLG 38
RR+ + IE++G ++P+ NE QE+ V LN +R+ +W+
Sbjct: 27 RRDGRFIERVGFYNPVANEKQER-VRLNADRLNHWIA 62
>sp|C0QKU4|RS16_DESAH 30S ribosomal protein S16 OS=Desulfobacterium autotrophicum
(strain ATCC 43914 / DSM 3382 / HRM2) GN=rpsP PE=3 SV=1
Length = 84
Score = 35.4 bits (80), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Query: 3 RNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITS 46
R+ + +E +GT+DP+ + + LN ERIRYW+G T+
Sbjct: 29 RDGKFLESVGTYDPM---VEPAAIILNEERIRYWMGEGATPTTT 69
>sp|B4RIW5|RS16_NEIG2 30S ribosomal protein S16 OS=Neisseria gonorrhoeae (strain
NCCP11945) GN=rpsP PE=3 SV=1
Length = 81
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 2 RRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLG 38
RR+ + IE++G ++P+ NE QE+ V LN +R+ +W+
Sbjct: 27 RRDGRFIERVGFYNPVANEKQER-VRLNADRLNHWIA 62
>sp|Q5FA57|RS16_NEIG1 30S ribosomal protein S16 OS=Neisseria gonorrhoeae (strain ATCC
700825 / FA 1090) GN=rpsP PE=3 SV=1
Length = 81
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 27/37 (72%), Gaps = 1/37 (2%)
Query: 2 RRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLG 38
RR+ + IE++G ++P+ NE QE+ V LN +R+ +W+
Sbjct: 27 RRDGRFIERVGFYNPVANEKQER-VRLNADRLNHWIA 62
>sp|A2RJS1|RS16_LACLM 30S ribosomal protein S16 OS=Lactococcus lactis subsp. cremoris
(strain MG1363) GN=rpsP PE=3 SV=1
Length = 90
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Query: 3 RNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGLAGLFPIYH 62
R+ + IE +GT++PL E Q V+L ER+ WL ++ + VR L AG+ +H
Sbjct: 29 RDGKFIETVGTYNPLVTENQ---VTLKEERVLEWL-SNGAQPSDTVRNLLSKAGVMKKFH 84
Query: 63 RTYMN 67
+ ++
Sbjct: 85 ESKLS 89
>sp|Q9CFB2|RS16_LACLA 30S ribosomal protein S16 OS=Lactococcus lactis subsp. lactis
(strain IL1403) GN=rpsP PE=3 SV=1
Length = 90
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Query: 3 RNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGLAGLFPIYH 62
R+ + IE +GT++PL E Q V+L ER+ WL + + VR L AG+ +H
Sbjct: 29 RDGKFIETVGTYNPLVTEEQ---VTLKEERVLEWL-SKGAQPSDTVRNLLSKAGVMKKFH 84
Query: 63 RTYMN 67
+ ++
Sbjct: 85 ESKLS 89
>sp|Q1GDC7|RS16_RUEST 30S ribosomal protein S16 OS=Ruegeria sp. (strain TM1040) GN=rpsP
PE=3 SV=1
Length = 121
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 27/37 (72%)
Query: 1 MRRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWL 37
M R+ + IE+LGT++PL + E+ V ++IE+I+ WL
Sbjct: 27 MPRDGRFIEKLGTYNPLLPKDSEERVKMDIEKIQAWL 63
>sp|A0KG23|RS16_AERHH 30S ribosomal protein S16 OS=Aeromonas hydrophila subsp.
hydrophila (strain ATCC 7966 / NCIB 9240) GN=rpsP PE=3
SV=1
Length = 82
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 27/38 (71%), Gaps = 1/38 (2%)
Query: 3 RNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTS 40
R+ + IE++G F+P+ + EKL +L++ RI +W+GT
Sbjct: 28 RDGRFIERVGFFNPVASGNAEKL-NLDLARIEHWVGTG 64
>sp|Q8DUN9|RS16_STRMU 30S ribosomal protein S16 OS=Streptococcus mutans serotype c
(strain ATCC 700610 / UA159) GN=rpsP PE=3 SV=1
Length = 91
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Query: 3 RNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGLAGLFPIYH 62
R+ + IE +GT++PL E Q V+L +RI WLG + + VR + AG+ +H
Sbjct: 29 RDGRFIETVGTYNPLVTENQ---VTLKEDRILEWLG-NGAQPSDTVRNILSKAGIMQKFH 84
>sp|C0MEH6|RS16_STRS7 30S ribosomal protein S16 OS=Streptococcus equi subsp.
zooepidemicus (strain H70) GN=rpsP PE=3 SV=1
Length = 90
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Query: 3 RNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGLAGLFPIYH 62
R+ + IE +GT++PL E Q V+L +R+ WLG + VR L AG+ +H
Sbjct: 29 RDGRFIETVGTYNPLVAENQ---VTLKEDRVLDWLGKG-AQPSDTVRSLLSKAGVMAKFH 84
>sp|C0M751|RS16_STRE4 30S ribosomal protein S16 OS=Streptococcus equi subsp. equi
(strain 4047) GN=rpsP PE=3 SV=1
Length = 90
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Query: 3 RNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGLAGLFPIYH 62
R+ + IE +GT++PL E Q V+L +R+ WLG + VR L AG+ +H
Sbjct: 29 RDGRFIETVGTYNPLVAENQ---VTLKEDRVLDWLGKG-AQPSDTVRSLLSKAGVMAKFH 84
>sp|Q02Y12|RS16_LACLS 30S ribosomal protein S16 OS=Lactococcus lactis subsp. cremoris
(strain SK11) GN=rpsP PE=3 SV=1
Length = 90
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Query: 3 RNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGLAGLFPIYH 62
R+ + IE +GT++PL E Q V+L ER+ WL ++ + VR L AG+ +H
Sbjct: 29 RDGKFIETVGTYNPLLTENQ---VTLKEERVLEWL-SNGAQPSDTVRNLLSKAGVMKKFH 84
Query: 63 RTYMN 67
+ ++
Sbjct: 85 ESKLS 89
>sp|A5G0H0|RS16_ACICJ 30S ribosomal protein S16 OS=Acidiphilium cryptum (strain JF-5)
GN=rpsP PE=3 SV=1
Length = 114
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 36/59 (61%), Gaps = 3/59 (5%)
Query: 3 RNDQPIEQLGTFDP-LPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGLAGLFPI 60
R+ + IE++GT++P LP +++++ + L +R+ +WL + T V G AGL P+
Sbjct: 29 RDGKFIERIGTYNPMLPADHEDR-IRLVTDRVTHWL-SQGAQATDRVARFIGKAGLAPM 85
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.130 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,843,699
Number of Sequences: 539616
Number of extensions: 1425096
Number of successful extensions: 7007
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 156
Number of HSP's that attempted gapping in prelim test: 6838
Number of HSP's gapped (non-prelim): 291
length of query: 103
length of database: 191,569,459
effective HSP length: 72
effective length of query: 31
effective length of database: 152,717,107
effective search space: 4734230317
effective search space used: 4734230317
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)