Query psy14541
Match_columns 103
No_of_seqs 134 out of 1080
Neff 4.5
Searched_HMMs 29240
Date Fri Aug 16 22:33:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14541.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14541hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pys_P 30S ribosomal protein S 99.9 7.5E-27 2.6E-31 157.0 2.3 57 1-60 26-82 (83)
2 3r8n_P 30S ribosomal protein S 99.9 9E-26 3.1E-30 151.5 4.2 54 1-56 26-79 (82)
3 3bn0_A 30S ribosomal protein S 99.9 1.8E-25 6.2E-30 157.4 2.8 56 1-61 27-82 (112)
4 3bbn_P Ribosomal protein S16; 99.9 1.7E-26 5.7E-31 156.8 -3.8 58 1-64 26-83 (88)
5 1ytr_A Bacteriocin plantaricin 35.8 9.6 0.00033 19.8 0.4 19 37-56 7-25 (26)
6 1xrx_A SEQA protein; protein f 25.1 60 0.002 19.4 2.6 34 24-58 2-39 (50)
7 2d0j_A Galactosylgalactosylxyl 22.4 47 0.0016 25.4 2.3 48 35-83 35-94 (246)
8 1v84_A Galactosylgalactosylxyl 20.5 76 0.0026 24.3 3.1 27 35-61 35-62 (253)
9 3dxl_A Allergen AED A 2; odora 19.3 24 0.00083 27.6 0.1 24 7-37 54-77 (303)
10 3qbu_A Putative uncharacterize 18.7 66 0.0022 24.2 2.4 46 14-60 29-91 (326)
No 1
>3pys_P 30S ribosomal protein S16; ribosome, IGR, IRES, PSIV, CRPV; 3.40A {Thermus thermophilus} PDB: 1pnx_P 1voq_P 1vos_P 1vov_P 1vox_P 1voz_P 1pns_P 3ms0_P 3mr8_P 3pyq_P 3pyn_P 3pyu_P 3fic_P* 1emw_A 1fjg_P* 1hnw_P* 1hnx_P* 1hnz_P* 1hr0_P 1i94_P* ...
Probab=99.92 E-value=7.5e-27 Score=157.01 Aligned_cols=57 Identities=32% Similarity=0.642 Sum_probs=53.3
Q ss_pred CCCCCccccccceecCCCCCCCcceeeeeHHHHHHHHhCCCcccCHHHHHHHHHcCCCCc
Q psy14541 1 MRRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGLAGLFPI 60 (103)
Q Consensus 1 ~~RdGk~IE~LG~YdP~~~~~~ek~v~ln~eRi~yWL~~G~AqPS~tV~~LL~~ag~lp~ 60 (103)
++|||+|||+||||||+++. ++.|.||+||++|||++| ||||++|++||+++|++.+
T Consensus 26 ~~RdGr~IE~lG~YnP~~~~--~~~i~l~~eri~~Wl~~G-AqptdtV~~ll~~~g~~~~ 82 (83)
T 3pys_P 26 RKRDGKYIEKIGYYDPRKTT--PDWLKVDVERARYWLSVG-AQPTDTARRLLRQAGVFRQ 82 (83)
T ss_dssp SCTTCCCSEECCCBCSSCCS--TTCBCCCHHHHHHHHHTC-CCBCSTTGGGTGGGCSSCC
T ss_pred CCCCCCceeeeeEEcCCCCC--CceEEEchHHHHHHHHCC-CcCCHHHHHHHHHcCcccc
Confidence 58999999999999999853 578999999999999999 9999999999999999975
No 2
>3r8n_P 30S ribosomal protein S16; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 1p6g_P 1p87_P* 1vs7_P* 2avy_P 2aw7_P 1vs5_P 2i2u_P 2i2p_P* 2qan_P* 2qb9_P* 2qbb_P* 2qbd_P 2qbf_P 2qbh_P* 2qbj_P* 2qou_P* 2qow_P* 2qoy_P* 2qp0_P* 2vho_P ...
Probab=99.92 E-value=9e-26 Score=151.47 Aligned_cols=54 Identities=31% Similarity=0.558 Sum_probs=50.2
Q ss_pred CCCCCccccccceecCCCCCCCcceeeeeHHHHHHHHhCCCcccCHHHHHHHHHcC
Q psy14541 1 MRRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGLAG 56 (103)
Q Consensus 1 ~~RdGk~IE~LG~YdP~~~~~~ek~v~ln~eRi~yWL~~G~AqPS~tV~~LL~~ag 56 (103)
++|||+|||+||||||++++. ++.|.||+|||+|||++| ||||++|++||++++
T Consensus 26 ~~RdGr~IE~lG~YnP~~~~~-~~~v~l~~eri~~Wl~~G-AqptdtV~~Ll~~a~ 79 (82)
T 3r8n_P 26 NARNGRFIERVGFFNPIASEK-EEGTRLDLDRIAHWVGQG-ATISDRVAALIKEVN 79 (82)
T ss_dssp SCTTSCEEEEEEEECTTCCSS-SCCCCCCHHHHHHHHHHT-CEECHHHHHHHTTSC
T ss_pred CCCCCCceeeeeEEcCCCCCC-cceEEEcHHHHHHHHHCC-CccCHHHHHHHHhhh
Confidence 589999999999999998864 357999999999999999 999999999999886
No 3
>3bn0_A 30S ribosomal protein S16; ribonucleoprotein, ribosome; 2.00A {Aquifex aeolicus} SCOP: d.27.1.1
Probab=99.91 E-value=1.8e-25 Score=157.43 Aligned_cols=56 Identities=20% Similarity=0.451 Sum_probs=47.9
Q ss_pred CCCCCccccccceecCCCCCCCcceeeeeHHHHHHHHhCCCcccCHHHHHHHHHcCCCCcc
Q psy14541 1 MRRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGLAGLFPIY 61 (103)
Q Consensus 1 ~~RdGk~IE~LG~YdP~~~~~~ek~v~ln~eRi~yWL~~G~AqPS~tV~~LL~~ag~lp~~ 61 (103)
++|||+|||+||||||+ + ++.|.||++||+|||++| ||||++|++||+++|+++.+
T Consensus 27 ~~RDGr~IE~lG~YnP~-~---~~~v~ld~eri~~WL~~G-AQPTdtV~~LL~~ag~~~~~ 82 (112)
T 3bn0_A 27 SPREGKYIDILGTYDPK-R---KVLINVYPEKVKEWVLKG-VELSHRAKAILWNHGILKEV 82 (112)
T ss_dssp ------CSEEEEEEETT-T---TEEEEECHHHHHHHHHTT-CEEEHHHHHHHHHTTHHHHH
T ss_pred CCCCCCCEeEeeeccCC-C---cceEEEcHHHHHHHHHcC-CccCHHHHHHHHHcCCcccc
Confidence 58999999999999999 3 479999999999999999 99999999999999999987
No 4
>3bbn_P Ribosomal protein S16; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=99.90 E-value=1.7e-26 Score=156.80 Aligned_cols=58 Identities=22% Similarity=0.437 Sum_probs=52.4
Q ss_pred CCCCCccccccceecCCCCCCCcceeeeeHHHHHHHHhCCCcccCHHHHHHHHHcCCCCcchhh
Q psy14541 1 MRRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGLAGLFPIYHRT 64 (103)
Q Consensus 1 ~~RdGk~IE~LG~YdP~~~~~~ek~v~ln~eRi~yWL~~G~AqPS~tV~~LL~~ag~lp~~p~~ 64 (103)
++|||+|||+||||||++++ +.||+|||+|||++| ||||++|++||+++|++++++..
T Consensus 26 ~~RDGr~IE~lG~YnP~~~~-----~~l~~eri~~Wl~~G-AqpTdtV~~ll~~~g~~~~~~~~ 83 (88)
T 3bbn_P 26 SRREGRDLQKVGFYDPIKSQ-----TYLNVPAILDFLEKG-AQPTETVYDILKRAEVFKEFRLN 83 (88)
T ss_dssp SCSSSCCSSCCCCBCTTSSC-----BCCCTTTSSSSTTSS-CEECTTTSSSSTTTTSSSCC---
T ss_pred CCCCCCcEeEEEeccCCCCc-----eEEcHHHHHHHHHcC-CccCHHHHHHHHHcCCccccccc
Confidence 58999999999999999863 799999999999999 99999999999999999998754
No 5
>1ytr_A Bacteriocin plantaricin A; antibiotic, pheromone, amphipathic helix, micelle; NMR {Synthetic}
Probab=35.84 E-value=9.6 Score=19.85 Aligned_cols=19 Identities=26% Similarity=0.322 Sum_probs=16.2
Q ss_pred HhCCCcccCHHHHHHHHHcC
Q psy14541 37 LGTSDIHITSPVRELFGLAG 56 (103)
Q Consensus 37 L~~G~AqPS~tV~~LL~~ag 56 (103)
|..| |..-..|++|+++.|
T Consensus 7 lqmg-ataikqvkklfkkwg 25 (26)
T 1ytr_A 7 LQMG-ATAIKQVKKLFKKWG 25 (26)
T ss_dssp CCSS-SHHHHHHHHHHTTCC
T ss_pred HHhh-HHHHHHHHHHHHHcC
Confidence 5678 888899999999877
No 6
>1xrx_A SEQA protein; protein filament, LEFT-handed helix, DNA replication inhibit replication inhibitor; 2.15A {Escherichia coli} SCOP: a.43.1.7
Probab=25.09 E-value=60 Score=19.39 Aligned_cols=34 Identities=12% Similarity=0.170 Sum_probs=25.0
Q ss_pred ceeeeeHHHHHHHHhC----CCcccCHHHHHHHHHcCCC
Q psy14541 24 KLVSLNIERIRYWLGT----SDIHITSPVRELFGLAGLF 58 (103)
Q Consensus 24 k~v~ln~eRi~yWL~~----G~AqPS~tV~~LL~~ag~l 58 (103)
|.|.+|-|-.+|-.++ | -.+|+..++||...+-.
T Consensus 2 K~IEvDdelY~YIas~t~~ig-EsaSdiLRRll~l~~~~ 39 (50)
T 1xrx_A 2 KTIEVDDELYSYIASHTKHIG-ESASDILRRMLKFSAAS 39 (50)
T ss_dssp EEEEECHHHHHHHHTTCSSTT-CCHHHHHHHHHTC----
T ss_pred CceeecHHHHHHHHHhchhhc-cCHHHHHHHHHcCCccc
Confidence 5689999999998665 6 67888999999876653
No 7
>2d0j_A Galactosylgalactosylxylosylprotein 3-beta- glucuronosyltransferase 2; rossmann-like fold, glucuronyltransferase; 2.00A {Homo sapiens}
Probab=22.38 E-value=47 Score=25.36 Aligned_cols=48 Identities=23% Similarity=0.270 Sum_probs=32.2
Q ss_pred HHHh--CCCcccCHHHHHHHHHcCCCCcch-----hhh-----hHHhhchhHHHHHHHHHH
Q psy14541 35 YWLG--TSDIHITSPVRELFGLAGLFPIYH-----RTY-----MNAWRNRNKAEAEIEKQK 83 (103)
Q Consensus 35 yWL~--~G~AqPS~tV~~LL~~ag~lp~~p-----~~~-----~~~~~~~~k~~~~~~~~~ 83 (103)
+||= -| .+.|+.|++||++.|+.-.|- ..| .+.|.+|...-+.++...
T Consensus 35 ~WIVVEd~-~~~~~~v~~lL~~sgl~y~HL~~~~~~~~~~~~~prg~~qRn~AL~~Ir~~~ 94 (246)
T 2d0j_A 35 HWILVEDA-AARSELVSRFLARAGLPSTHLHVPTPRRYKRPGLPRATEQRNAGLAWLRQRH 94 (246)
T ss_dssp EEEEEESS-SSCCHHHHHHHHHSCSCEEEEECCCCCC----CCCCCHHHHHHHHHHHHHHS
T ss_pred EEEEEcCC-CCCCHHHHHHHHHcCCceEEEecCCccccCCCCCcchHHHHHHHHHHHHHhc
Confidence 4654 44 567899999999999976552 122 345777777767666543
No 8
>1v84_A Galactosylgalactosylxylosylprotein 3-beta- glucuronosyltransferase 1; glycoprotein, glycocyltransferase, HNK-1 epitop; HET: GAL NDG NAG TLA UDP; 1.82A {Homo sapiens} SCOP: c.68.1.7 PDB: 1v83_A* 1v82_A*
Probab=20.51 E-value=76 Score=24.30 Aligned_cols=27 Identities=26% Similarity=0.209 Sum_probs=20.4
Q ss_pred HHHhCCC-cccCHHHHHHHHHcCCCCcc
Q psy14541 35 YWLGTSD-IHITSPVRELFGLAGLFPIY 61 (103)
Q Consensus 35 yWL~~G~-AqPS~tV~~LL~~ag~lp~~ 61 (103)
+||=+-| -..|+.|++||++.|+.-.|
T Consensus 35 ~WIVVEd~~~~t~~va~lL~~sgl~y~H 62 (253)
T 1v84_A 35 HWLVVEDAPRRTPLTARLLRDTGLNYTH 62 (253)
T ss_dssp EEEEEESSSSCCHHHHHHHHHHCCEEEE
T ss_pred EEEEEeCCCCCCHHHHHHHHHcCCceEE
Confidence 3665442 35899999999999997555
No 9
>3dxl_A Allergen AED A 2; odorant-binding protein, all-helical, secreted; 1.30A {Aedes aegypti} PDB: 3dy9_A 3dye_A* 3dzt_A*
Probab=19.35 E-value=24 Score=27.57 Aligned_cols=24 Identities=17% Similarity=0.398 Sum_probs=18.7
Q ss_pred cccccceecCCCCCCCcceeeeeHHHHHHHH
Q psy14541 7 PIEQLGTFDPLPNEYQEKLVSLNIERIRYWL 37 (103)
Q Consensus 7 ~IE~LG~YdP~~~~~~ek~v~ln~eRi~yWL 37 (103)
++|.||.|||-.+ .+|.++|.-=+
T Consensus 54 v~~~lglyd~~~~-------~F~~~~i~~Q~ 77 (303)
T 3dxl_A 54 VLVRTGLYDPVAQ-------KFDASVIQEQF 77 (303)
T ss_dssp HHHHHTSEETTTT-------EECCHHHHHHH
T ss_pred hhhhcccccCccC-------CcCHHHHHHHH
Confidence 5789999999765 47778877655
No 10
>3qbu_A Putative uncharacterized protein; metallo enzyme, peptidoglycan, TIM barrel, deacetylase, HYDR; 2.57A {Helicobacter pylori}
Probab=18.75 E-value=66 Score=24.24 Aligned_cols=46 Identities=20% Similarity=0.233 Sum_probs=27.8
Q ss_pred ecCCCCCCCcc-eeeeeHHHHHHHHhCCCc----------------ccCHHHHHHHHHcCCCCc
Q psy14541 14 FDPLPNEYQEK-LVSLNIERIRYWLGTSDI----------------HITSPVRELFGLAGLFPI 60 (103)
Q Consensus 14 YdP~~~~~~ek-~v~ln~eRi~yWL~~G~A----------------qPS~tV~~LL~~ag~lp~ 60 (103)
++|.+...... .+.+|+|....|++.+ . .=++++..||++.|+-..
T Consensus 29 ~~~wP~g~~~av~lt~D~D~~~~w~~~~-~~~~~~~~~s~~~yG~~~~~~rlL~lL~~~~v~aT 91 (326)
T 3qbu_A 29 IDPFTMAKEILVAYGVDIDAVAGWLGSY-GGEDSPDDISRGLFAGEVGIPRLLKLFKKYHLPAT 91 (326)
T ss_dssp ------CCEEEEEEEEECCHHHHHHHTS-SCTTCHHHHHHHHHHHHTHHHHHHHHHHHTTCCCE
T ss_pred CCCCCCCCeEEEEEEEeCCCcccccccC-CccCchhhcchhhcCcHHhHHHHHHHHHHcCCCEE
Confidence 45655542111 2688999999999765 3 225678889999987544
Done!