Your job contains 1 sequence.
>psy14541
MRRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGLAGLFPI
YHRTYMNAWRNRNKAEAEIEKQKQEKLKAEQEANQDKEAASSA
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy14541
(103 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0033907 - symbol:mRpS16 "mitochondrial ribosomal p... 248 3.9e-21 1
WB|WBGene00018961 - symbol:mrps-16 species:6239 "Caenorha... 204 1.8e-16 1
UNIPROTKB|J9NS54 - symbol:MRPS16 "Uncharacterized protein... 185 1.8e-14 1
UNIPROTKB|Q9Y3D3 - symbol:MRPS16 "28S ribosomal protein S... 185 1.8e-14 1
UNIPROTKB|P82915 - symbol:MRPS16 "28S ribosomal protein S... 184 2.3e-14 1
MGI|MGI:1913492 - symbol:Mrps16 "mitochondrial ribosomal ... 182 3.8e-14 1
UNIPROTKB|F1SU70 - symbol:LOC100739849 "Uncharacterized p... 180 6.2e-14 1
RGD|1582995 - symbol:Mrps16 "mitochondrial ribosomal prot... 174 2.7e-13 1
ZFIN|ZDB-GENE-041010-123 - symbol:mrps16 "mitochondrial r... 170 7.1e-13 1
UNIPROTKB|E1C907 - symbol:MRPS16 "Uncharacterized protein... 164 3.1e-12 1
UNIPROTKB|A6ND22 - symbol:MRPS16 "28S ribosomal protein S... 150 9.4e-11 1
UNIPROTKB|B4E032 - symbol:MRPS16 "cDNA FLJ58442, highly s... 146 2.5e-10 1
UNIPROTKB|F1PT11 - symbol:F1PT11 "Uncharacterized protein... 118 2.3e-07 1
TAIR|locus:2139624 - symbol:SSR16 "small subunit ribosoma... 99 2.4e-05 1
TAIR|locus:2164585 - symbol:AT5G56940 species:3702 "Arabi... 97 3.9e-05 1
TIGR_CMR|SPO_3253 - symbol:SPO_3253 "ribosomal protein S1... 94 8.1e-05 1
POMBASE|SPBC354.06 - symbol:mrps16 "mitochondrial ribosom... 87 0.00045 1
>FB|FBgn0033907 [details] [associations]
symbol:mRpS16 "mitochondrial ribosomal protein S16"
species:7227 "Drosophila melanogaster" [GO:0005763 "mitochondrial
small ribosomal subunit" evidence=ISS;NAS] [GO:0003735 "structural
constituent of ribosome" evidence=ISS;NAS] [GO:0006412
"translation" evidence=ISS] InterPro:IPR000307 Pfam:PF00886
PROSITE:PS00732 EMBL:AE013599 GO:GO:0006412 GO:GO:0003735
GO:GO:0005763 Gene3D:3.30.1320.10 InterPro:IPR023803
PANTHER:PTHR12919 SUPFAM:SSF54565 TIGRFAMs:TIGR00002 eggNOG:COG0228
CTD:51021 GeneTree:ENSGT00390000014309 OMA:YNKRARD EMBL:AY119210
RefSeq:NP_523737.1 UniGene:Dm.2747 ProteinModelPortal:Q9V6Y3
SMR:Q9V6Y3 STRING:Q9V6Y3 PaxDb:Q9V6Y3 PRIDE:Q9V6Y3
EnsemblMetazoa:FBtr0087578 EnsemblMetazoa:FBtr0310367
EnsemblMetazoa:FBtr0310368 GeneID:36570 KEGG:dme:Dmel_CG8338
FlyBase:FBgn0033907 InParanoid:Q9V6Y3 OrthoDB:EOG4GXD48
PhylomeDB:Q9V6Y3 GenomeRNAi:36570 NextBio:799259 Bgee:Q9V6Y3
GermOnline:CG8338 Uniprot:Q9V6Y3
Length = 129
Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
Identities = 47/73 (64%), Positives = 58/73 (79%)
Query: 2 RRND-QP-IEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGLAGLFP 59
R+N QP IEQ+G+FDPLPN+Y E+LV+LN ERIRYWLG H+++P EL G+AGL P
Sbjct: 41 RKNQHQPVIEQVGSFDPLPNDYNERLVALNTERIRYWLGKG-AHLSTPAAELLGIAGLLP 99
Query: 60 IYHRTYMNAWRNR 72
I+ RTYM AWRNR
Sbjct: 100 IHPRTYMTAWRNR 112
>WB|WBGene00018961 [details] [associations]
symbol:mrps-16 species:6239 "Caenorhabditis elegans"
[GO:0003735 "structural constituent of ribosome" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0006898 "receptor-mediated endocytosis" evidence=IMP]
InterPro:IPR000307 Pfam:PF00886 PROSITE:PS00732 GO:GO:0005739
GO:GO:0009792 GO:GO:0006898 GO:GO:0040010 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 EMBL:FO081078 Gene3D:3.30.1320.10
InterPro:IPR023803 PANTHER:PTHR12919 SUPFAM:SSF54565
HOGENOM:HOG000246720 GeneTree:ENSGT00390000014309 PIR:T30112
RefSeq:NP_001022207.1 ProteinModelPortal:Q10129 SMR:Q10129
STRING:Q10129 PaxDb:Q10129 PRIDE:Q10129 EnsemblMetazoa:F56D1.3.1
EnsemblMetazoa:F56D1.3.2 GeneID:3565469 KEGG:cel:CELE_F56D1.3
UCSC:F56D1.3.1 CTD:3565469 WormBase:F56D1.3 eggNOG:NOG243012
InParanoid:Q10129 OMA:GGHLTIH NextBio:956615 Uniprot:Q10129
Length = 147
Score = 204 (76.9 bits), Expect = 1.8e-16, P = 1.8e-16
Identities = 36/65 (55%), Positives = 51/65 (78%)
Query: 8 IEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGLAGLFPIYHRTYMN 67
+EQ+GTFDPLPN+ EKLV+LN R++YW+G + HI+ PV EL GL+GLFPI+ ++++
Sbjct: 47 LEQVGTFDPLPNQKNEKLVALNFGRLKYWIGERNAHISVPVLELLGLSGLFPIHPKSFIR 106
Query: 68 AWRNR 72
A NR
Sbjct: 107 AKDNR 111
>UNIPROTKB|J9NS54 [details] [associations]
symbol:MRPS16 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006412 "translation" evidence=IEA]
[GO:0005840 "ribosome" evidence=IEA] [GO:0003735 "structural
constituent of ribosome" evidence=IEA] InterPro:IPR000307
Pfam:PF00886 HAMAP:MF_00385 GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 Gene3D:3.30.1320.10 InterPro:IPR023803
PANTHER:PTHR12919 SUPFAM:SSF54565 TIGRFAMs:TIGR00002
GeneTree:ENSGT00390000014309 EMBL:AAEX03002830
Ensembl:ENSCAFT00000049758 Uniprot:J9NS54
Length = 199
Score = 185 (70.2 bits), Expect = 1.8e-14, P = 1.8e-14
Identities = 34/70 (48%), Positives = 50/70 (71%)
Query: 3 RNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGLAGLFPIYH 62
R+ + +EQLG++DPLPN + EK+V+LN+ERIR+W+G H++ PV L GL+G FP++
Sbjct: 107 RDGRFVEQLGSYDPLPNSHGEKIVALNLERIRHWIGCG-AHLSKPVERLLGLSGFFPLHP 165
Query: 63 RTYMNAWRNR 72
NA R R
Sbjct: 166 MMITNAERLR 175
>UNIPROTKB|Q9Y3D3 [details] [associations]
symbol:MRPS16 "28S ribosomal protein S16, mitochondrial"
species:9606 "Homo sapiens" [GO:0006412 "translation" evidence=NAS]
[GO:0005763 "mitochondrial small ribosomal subunit" evidence=IDA]
[GO:0003735 "structural constituent of ribosome" evidence=NAS]
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR000307
Pfam:PF00886 PROSITE:PS00732 GO:GO:0006412 GO:GO:0003735
GO:GO:0005763 GermOnline:ENSG00000182180 Gene3D:3.30.1320.10
InterPro:IPR023803 PANTHER:PTHR12919 SUPFAM:SSF54565
TIGRFAMs:TIGR00002 eggNOG:COG0228 HOGENOM:HOG000246720 CTD:51021
HOVERGEN:HBG017758 OrthoDB:EOG4D7Z73 EMBL:AF151890 EMBL:AB049948
EMBL:BC021106 EMBL:AB051351 IPI:IPI00032872 RefSeq:NP_057149.1
UniGene:Hs.180312 ProteinModelPortal:Q9Y3D3 SMR:Q9Y3D3
IntAct:Q9Y3D3 STRING:Q9Y3D3 PhosphoSite:Q9Y3D3 DMDM:13633952
PaxDb:Q9Y3D3 PRIDE:Q9Y3D3 DNASU:51021 Ensembl:ENST00000372945
GeneID:51021 KEGG:hsa:51021 UCSC:uc001jts.1 GeneCards:GC10M075008
HGNC:HGNC:14048 MIM:609204 MIM:610498 neXtProt:NX_Q9Y3D3
Orphanet:254920 PharmGKB:PA31000 InParanoid:Q9Y3D3 GenomeRNAi:51021
NextBio:53544 ArrayExpress:Q9Y3D3 Bgee:Q9Y3D3 CleanEx:HS_MRPS16
Genevestigator:Q9Y3D3 Uniprot:Q9Y3D3
Length = 137
Score = 185 (70.2 bits), Expect = 1.8e-14, P = 1.8e-14
Identities = 34/70 (48%), Positives = 51/70 (72%)
Query: 3 RNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGLAGLFPIYH 62
R+ + +EQLG++DPLPN + EKLV+LN++RIR+W+G H++ P+ +L GLAG FP++
Sbjct: 43 RDGRFVEQLGSYDPLPNSHGEKLVALNLDRIRHWIGCG-AHLSKPMEKLLGLAGFFPLHP 101
Query: 63 RTYMNAWRNR 72
NA R R
Sbjct: 102 MMITNAERLR 111
>UNIPROTKB|P82915 [details] [associations]
symbol:MRPS16 "28S ribosomal protein S16, mitochondrial"
species:9913 "Bos taurus" [GO:0005763 "mitochondrial small
ribosomal subunit" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0003735 "structural constituent of ribosome"
evidence=IEA] InterPro:IPR000307 Pfam:PF00886 PROSITE:PS00732
GO:GO:0006412 GO:GO:0003735 GO:GO:0005763 Gene3D:3.30.1320.10
InterPro:IPR023803 PANTHER:PTHR12919 SUPFAM:SSF54565
TIGRFAMs:TIGR00002 eggNOG:COG0228 HOGENOM:HOG000246720
EMBL:BC118470 IPI:IPI00699568 RefSeq:NP_001068942.1
UniGene:Bt.88967 ProteinModelPortal:P82915 IntAct:P82915
STRING:P82915 PRIDE:P82915 Ensembl:ENSBTAT00000001255 GeneID:510899
KEGG:bta:510899 CTD:51021 GeneTree:ENSGT00390000014309
HOVERGEN:HBG017758 InParanoid:P82915 OMA:YNKRARD OrthoDB:EOG4D7Z73
NextBio:20869667 Uniprot:P82915
Length = 135
Score = 184 (69.8 bits), Expect = 2.3e-14, P = 2.3e-14
Identities = 33/70 (47%), Positives = 51/70 (72%)
Query: 3 RNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGLAGLFPIYH 62
R+ + +EQLG++DP+PN + EKLV+LN++RIR+W+G H++ PV +L GL+G FP++
Sbjct: 43 RDGRFVEQLGSYDPMPNSHGEKLVALNLDRIRHWIGCG-AHLSKPVEKLLGLSGFFPLHP 101
Query: 63 RTYMNAWRNR 72
NA R R
Sbjct: 102 MVITNAERLR 111
>MGI|MGI:1913492 [details] [associations]
symbol:Mrps16 "mitochondrial ribosomal protein S16"
species:10090 "Mus musculus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0005763 "mitochondrial small
ribosomal subunit" evidence=ISO] [GO:0005840 "ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] InterPro:IPR000307 Pfam:PF00886
PROSITE:PS00732 MGI:MGI:1913492 GO:GO:0005739 GO:GO:0006412
GO:GO:0003735 GO:GO:0005763 Gene3D:3.30.1320.10 InterPro:IPR023803
PANTHER:PTHR12919 SUPFAM:SSF54565 TIGRFAMs:TIGR00002 eggNOG:COG0228
HOGENOM:HOG000246720 CTD:51021 GeneTree:ENSGT00390000014309
HOVERGEN:HBG017758 OMA:YNKRARD OrthoDB:EOG4D7Z73 EMBL:AB049949
EMBL:AK019243 EMBL:AK005206 EMBL:BC024656 IPI:IPI00132147
RefSeq:NP_079716.1 UniGene:Mm.23747 ProteinModelPortal:Q9CPX7
SMR:Q9CPX7 STRING:Q9CPX7 PhosphoSite:Q9CPX7 PaxDb:Q9CPX7
PRIDE:Q9CPX7 Ensembl:ENSMUST00000061444 GeneID:66242 KEGG:mmu:66242
UCSC:uc007sjp.1 InParanoid:Q9CPX7 NextBio:321067 Bgee:Q9CPX7
CleanEx:MM_MRPS16 Genevestigator:Q9CPX7
GermOnline:ENSMUSG00000049960 Uniprot:Q9CPX7
Length = 135
Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
Identities = 33/70 (47%), Positives = 51/70 (72%)
Query: 3 RNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGLAGLFPIYH 62
R+ + +EQLG++DPLPN + EKLV+LN++RIR+W+G H++ P+ +L GL+G FP++
Sbjct: 43 RDGRFVEQLGSYDPLPNSHGEKLVALNLDRIRHWIGCG-AHLSKPMEKLLGLSGFFPLHP 101
Query: 63 RTYMNAWRNR 72
NA R R
Sbjct: 102 MMITNAERLR 111
>UNIPROTKB|F1SU70 [details] [associations]
symbol:LOC100739849 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0006412 "translation" evidence=IEA] [GO:0005840
"ribosome" evidence=IEA] [GO:0003735 "structural constituent of
ribosome" evidence=IEA] InterPro:IPR000307 Pfam:PF00886
HAMAP:MF_00385 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
Gene3D:3.30.1320.10 InterPro:IPR023803 PANTHER:PTHR12919
SUPFAM:SSF54565 TIGRFAMs:TIGR00002 GeneTree:ENSGT00390000014309
OMA:YNKRARD EMBL:CU639423 EMBL:FP476096 RefSeq:XP_003133122.1
RefSeq:XP_003483547.1 Ensembl:ENSSSCT00000011270
Ensembl:ENSSSCT00000024853 GeneID:100516466 GeneID:100739849
KEGG:ssc:100516466 KEGG:ssc:100739849 Uniprot:F1SU70
Length = 135
Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
Identities = 33/70 (47%), Positives = 50/70 (71%)
Query: 3 RNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGLAGLFPIYH 62
R+ + +EQLG++DPLPN + EKLV+LN +RIR+W+G H++ PV +L GL+G +P++
Sbjct: 43 RDGRFVEQLGSYDPLPNSHGEKLVALNFDRIRHWIGCG-AHLSKPVEKLLGLSGFYPLHP 101
Query: 63 RTYMNAWRNR 72
NA R R
Sbjct: 102 MMITNAERLR 111
>RGD|1582995 [details] [associations]
symbol:Mrps16 "mitochondrial ribosomal protein S16"
species:10116 "Rattus norvegicus" [GO:0003735 "structural
constituent of ribosome" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=ISO] [GO:0005763 "mitochondrial small ribosomal subunit"
evidence=IEA;ISO] [GO:0006412 "translation" evidence=IEA]
InterPro:IPR000307 Pfam:PF00886 HAMAP:MF_00385 RGD:1582995
GO:GO:0006412 GO:GO:0003735 GO:GO:0005763 EMBL:CH474061
Gene3D:3.30.1320.10 InterPro:IPR023803 PANTHER:PTHR12919
SUPFAM:SSF54565 TIGRFAMs:TIGR00002 CTD:51021
GeneTree:ENSGT00390000014309 OMA:YNKRARD OrthoDB:EOG4D7Z73
IPI:IPI00362092 RefSeq:NP_001102988.1 UniGene:Rn.8846
Ensembl:ENSRNOT00000009207 GeneID:688912 KEGG:rno:688912
UCSC:RGD:1582995 NextBio:737514 Uniprot:D4A7X1
Length = 135
Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
Identities = 32/70 (45%), Positives = 50/70 (71%)
Query: 3 RNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGLAGLFPIYH 62
R+ + +EQLG++DPLPN + EKLV+LN++RIR+W+G ++ P+ +L GL+G FP++
Sbjct: 43 RDGRFVEQLGSYDPLPNSHGEKLVALNLDRIRHWIGCG-AQLSKPMEKLLGLSGFFPLHP 101
Query: 63 RTYMNAWRNR 72
NA R R
Sbjct: 102 MMITNAERLR 111
>ZFIN|ZDB-GENE-041010-123 [details] [associations]
symbol:mrps16 "mitochondrial ribosomal protein S16"
species:7955 "Danio rerio" [GO:0005622 "intracellular"
evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0003735
"structural constituent of ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA] InterPro:IPR000307 Pfam:PF00886
HAMAP:MF_00385 ZFIN:ZDB-GENE-041010-123 GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 Gene3D:3.30.1320.10 InterPro:IPR023803
PANTHER:PTHR12919 SUPFAM:SSF54565 TIGRFAMs:TIGR00002
HOGENOM:HOG000246720 CTD:51021 HOVERGEN:HBG017758 EMBL:BC083390
IPI:IPI00507006 RefSeq:NP_001006030.1 UniGene:Dr.13763
ProteinModelPortal:Q5XJB4 PRIDE:Q5XJB4 GeneID:450009
KEGG:dre:450009 InParanoid:Q5XJB4 NextBio:20832992
ArrayExpress:Q5XJB4 Bgee:Q5XJB4 Uniprot:Q5XJB4
Length = 129
Score = 170 (64.9 bits), Expect = 7.1e-13, P = 7.1e-13
Identities = 32/70 (45%), Positives = 47/70 (67%)
Query: 3 RNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGLAGLFPIYH 62
R+ + +EQ+G++DPLPN + EKLV+ N ERI++W+ H T PV +L GLAG FP++
Sbjct: 43 RDGKYLEQVGSYDPLPNIHNEKLVAFNYERIKHWIACG-AHTTKPVAKLLGLAGFFPLHP 101
Query: 63 RTYMNAWRNR 72
T A R +
Sbjct: 102 MTITEAERRQ 111
>UNIPROTKB|E1C907 [details] [associations]
symbol:MRPS16 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0005763
"mitochondrial small ribosomal subunit" evidence=IEA]
InterPro:IPR000307 Pfam:PF00886 HAMAP:MF_00385 GO:GO:0006412
GO:GO:0003735 GO:GO:0005763 Gene3D:3.30.1320.10 InterPro:IPR023803
PANTHER:PTHR12919 SUPFAM:SSF54565 TIGRFAMs:TIGR00002 CTD:51021
GeneTree:ENSGT00390000014309 OMA:YNKRARD EMBL:AADN02040962
IPI:IPI00589221 RefSeq:XP_001233312.1 RefSeq:XP_003642554.1
RefSeq:XP_003643364.1 UniGene:Gga.10148 Ensembl:ENSGALT00000000703
GeneID:100858706 GeneID:769996 KEGG:gga:100858706 KEGG:gga:769996
NextBio:20920220 Uniprot:E1C907
Length = 136
Score = 164 (62.8 bits), Expect = 3.1e-12, P = 3.1e-12
Identities = 32/70 (45%), Positives = 45/70 (64%)
Query: 3 RNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGLAGLFPIYH 62
R+ + +EQLG DPLPN + EK+ LN+ER+R+WLG ++ P +L GLAG P++
Sbjct: 43 RDGKYLEQLGCLDPLPNAHGEKVAGLNLERLRHWLGCG-AQLSRPAEKLLGLAGFLPLHP 101
Query: 63 RTYMNAWRNR 72
T NA R R
Sbjct: 102 MTITNAERLR 111
>UNIPROTKB|A6ND22 [details] [associations]
symbol:MRPS16 "28S ribosomal protein S16, mitochondrial"
species:9606 "Homo sapiens" [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] InterPro:IPR000307
Pfam:PF00886 HAMAP:MF_00385 GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 EMBL:AC016394 Gene3D:3.30.1320.10 InterPro:IPR023803
PANTHER:PTHR12919 SUPFAM:SSF54565 TIGRFAMs:TIGR00002
HOGENOM:HOG000246720 HOVERGEN:HBG017758 HGNC:HGNC:14048
IPI:IPI00643459 ProteinModelPortal:A6ND22 SMR:A6ND22 STRING:A6ND22
PRIDE:A6ND22 Ensembl:ENST00000372940 ArrayExpress:A6ND22
Bgee:A6ND22 Uniprot:A6ND22
Length = 99
Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
Identities = 26/52 (50%), Positives = 41/52 (78%)
Query: 3 RNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGL 54
R+ + +EQLG++DPLPN + EKLV+LN++RIR+W+G H++ P+ +L GL
Sbjct: 43 RDGRFVEQLGSYDPLPNSHGEKLVALNLDRIRHWIGCG-AHLSKPMEKLLGL 93
>UNIPROTKB|B4E032 [details] [associations]
symbol:MRPS16 "cDNA FLJ58442, highly similar to 28S
ribosomal protein S16, mitochondrial (S16mt)" species:9606 "Homo
sapiens" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0005840
"ribosome" evidence=IEA] InterPro:IPR000307 Pfam:PF00886
HAMAP:MF_00385 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
EMBL:AC016394 Gene3D:3.30.1320.10 InterPro:IPR023803
PANTHER:PTHR12919 SUPFAM:SSF54565 TIGRFAMs:TIGR00002
HOGENOM:HOG000246720 HOVERGEN:HBG017758 HGNC:HGNC:14048
EMBL:AK303204 IPI:IPI00909954 SMR:B4E032 STRING:B4E032
Ensembl:ENST00000416782 OMA:CIFAKAY Uniprot:B4E032
Length = 123
Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
Identities = 25/51 (49%), Positives = 40/51 (78%)
Query: 3 RNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFG 53
R+ + +EQLG++DPLPN + EKLV+LN++RIR+W+G H++ P+ +L G
Sbjct: 43 RDGRFVEQLGSYDPLPNSHGEKLVALNLDRIRHWIGCG-AHLSKPMEKLLG 92
>UNIPROTKB|F1PT11 [details] [associations]
symbol:F1PT11 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006412 "translation" evidence=IEA]
[GO:0005840 "ribosome" evidence=IEA] [GO:0003735 "structural
constituent of ribosome" evidence=IEA] InterPro:IPR000307
Pfam:PF00886 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
Gene3D:3.30.1320.10 InterPro:IPR023803 PANTHER:PTHR12919
SUPFAM:SSF54565 TIGRFAMs:TIGR00002 GeneTree:ENSGT00390000014309
OMA:CIFAKAY EMBL:AAEX03016714 Ensembl:ENSCAFT00000014176
Uniprot:F1PT11
Length = 134
Score = 118 (46.6 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 22/56 (39%), Positives = 39/56 (69%)
Query: 8 IEQLGTFDPLPNEYQEKLVSLNIERIRYWL--GTSDIHITSPVRELFGLAGLFPIY 61
+E L + DPLPN + EK+V+LN+++I +W+ GT H++ V ++ GL+G P++
Sbjct: 47 MEHLDSCDPLPNSHGEKIVALNLDQIWHWIHYGT---HLSQQVEKILGLSGFVPVH 99
>TAIR|locus:2139624 [details] [associations]
symbol:SSR16 "small subunit ribosomal protein 16"
species:3702 "Arabidopsis thaliana" [GO:0003735 "structural
constituent of ribosome" evidence=IEA;ISS] [GO:0005622
"intracellular" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=ISM] [GO:0005840 "ribosome" evidence=IEA;ISS;TAS]
[GO:0006412 "translation" evidence=IEA;ISS] [GO:0042254 "ribosome
biogenesis" evidence=ISS] [GO:0009941 "chloroplast envelope"
evidence=IDA] [GO:0009507 "chloroplast" evidence=IDA] [GO:0009536
"plastid" evidence=IDA] [GO:0009793 "embryo development ending in
seed dormancy" evidence=IMP;RCA] [GO:0010027 "thylakoid membrane
organization" evidence=RCA] [GO:0010228 "vegetative to reproductive
phase transition of meristem" evidence=RCA] [GO:0010267 "production
of ta-siRNAs involved in RNA interference" evidence=RCA]
[GO:0016226 "iron-sulfur cluster assembly" evidence=RCA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=RCA] [GO:0048481 "ovule development" evidence=RCA]
[GO:0051607 "defense response to virus" evidence=RCA]
InterPro:IPR000307 Pfam:PF00886 HAMAP:MF_00385 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0006412 GO:GO:0009941 GO:GO:0009793
GO:GO:0005840 GO:GO:0003735 EMBL:AL161585 EMBL:AL023094
Gene3D:3.30.1320.10 InterPro:IPR023803 PANTHER:PTHR12919
SUPFAM:SSF54565 TIGRFAMs:TIGR00002 eggNOG:COG0228
HOGENOM:HOG000246720 OMA:FSKAGIM EMBL:AY045607 EMBL:AY048218
EMBL:AY052220 EMBL:AF412081 EMBL:AY086956 EMBL:AY143795
IPI:IPI00529246 PIR:T05282 RefSeq:NP_195188.1 UniGene:At.22916
HSSP:P80379 ProteinModelPortal:O65686 SMR:O65686 STRING:O65686
PaxDb:O65686 PRIDE:O65686 ProMEX:O65686 EnsemblPlants:AT4G34620.1
GeneID:829614 KEGG:ath:AT4G34620 TAIR:At4g34620 InParanoid:O65686
PhylomeDB:O65686 ProtClustDB:CLSN2916103 ArrayExpress:O65686
Genevestigator:O65686 Uniprot:O65686
Length = 113
Score = 99 (39.9 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 23/58 (39%), Positives = 30/58 (51%)
Query: 2 RRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGLAGLFP 59
RR+ + IE LG +DPL + VSL +RI+YWL T V + AGL P
Sbjct: 28 RRDGKQIEVLGFYDPLQGKEDADRVSLKFDRIKYWLSVG-AQPTDTVESMLFRAGLIP 84
>TAIR|locus:2164585 [details] [associations]
symbol:AT5G56940 species:3702 "Arabidopsis thaliana"
[GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005739
"mitochondrion" evidence=ISM;IDA] [GO:0005840 "ribosome"
evidence=IEA;ISS] [GO:0006412 "translation" evidence=IEA;ISS]
[GO:0042254 "ribosome biogenesis" evidence=ISS] [GO:0009536
"plastid" evidence=IDA] [GO:0010267 "production of ta-siRNAs
involved in RNA interference" evidence=RCA] [GO:0035196 "production
of miRNAs involved in gene silencing by miRNA" evidence=RCA]
[GO:0051607 "defense response to virus" evidence=RCA]
InterPro:IPR000307 Pfam:PF00886 HAMAP:MF_00385 GO:GO:0005739
EMBL:CP002688 GO:GO:0009536 GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 EMBL:AB024035 Gene3D:3.30.1320.10 InterPro:IPR023803
PANTHER:PTHR12919 SUPFAM:SSF54565 TIGRFAMs:TIGR00002 OMA:YNIVVAH
HSSP:P80379 EMBL:AY034927 EMBL:AY059147 IPI:IPI00524534
RefSeq:NP_200504.1 UniGene:At.7092 ProteinModelPortal:Q9LTS6
SMR:Q9LTS6 STRING:Q9LTS6 PRIDE:Q9LTS6 EnsemblPlants:AT5G56940.1
GeneID:835796 KEGG:ath:AT5G56940 TAIR:At5g56940 InParanoid:Q9LTS6
PhylomeDB:Q9LTS6 ProtClustDB:CLSN2687373 ArrayExpress:Q9LTS6
Genevestigator:Q9LTS6 Uniprot:Q9LTS6
Length = 135
Score = 97 (39.2 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 21/57 (36%), Positives = 32/57 (56%)
Query: 3 RNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGLAGLFP 59
R+ + +E LG F+PLP + K + L +RI+YWL + PV+ L +GL P
Sbjct: 29 RDGKHLEVLGYFNPLPGQDGGKRMGLKFDRIKYWLSVG-AQPSDPVQRLLFRSGLLP 84
>TIGR_CMR|SPO_3253 [details] [associations]
symbol:SPO_3253 "ribosomal protein S16" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0042255 "ribosome assembly" evidence=ISS] InterPro:IPR000307
Pfam:PF00886 PROSITE:PS00732 HAMAP:MF_00385 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
Gene3D:3.30.1320.10 InterPro:IPR023803 PANTHER:PTHR12919
SUPFAM:SSF54565 TIGRFAMs:TIGR00002 KO:K02959 eggNOG:COG0228
HOGENOM:HOG000246720 ProtClustDB:PRK00040 RefSeq:YP_168456.1
ProteinModelPortal:Q5LNF2 SMR:Q5LNF2 GeneID:3195394
KEGG:sil:SPO3253 PATRIC:23379951 OMA:GSWNPML Uniprot:Q5LNF2
Length = 121
Score = 94 (38.1 bits), Expect = 8.1e-05, P = 8.1e-05
Identities = 21/58 (36%), Positives = 37/58 (63%)
Query: 1 MRRNDQPIEQLGTFDPL-PNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGLAGL 57
M R+ + IE+LGT++PL P + +E+ V +++ER++YWL + T V + AG+
Sbjct: 27 MPRDGRFIEKLGTYNPLLPKDSEER-VKMDVERVQYWL-SQGAQTTDRVARMLEAAGV 82
>POMBASE|SPBC354.06 [details] [associations]
symbol:mrps16 "mitochondrial ribosomal protein subunit
S16 (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0003735 "structural constituent of ribosome" evidence=ISS]
[GO:0005763 "mitochondrial small ribosomal subunit" evidence=ISS]
[GO:0006412 "translation" evidence=ISS] [GO:0032543 "mitochondrial
translation" evidence=NAS] InterPro:IPR000307 Pfam:PF00886
PROSITE:PS00732 EMBL:CU329671 GenomeReviews:CU329671_GR
GO:GO:0003735 GO:GO:0032543 GO:GO:0005763 Gene3D:3.30.1320.10
InterPro:IPR023803 PANTHER:PTHR12919 SUPFAM:SSF54565
TIGRFAMs:TIGR00002 eggNOG:COG0228 HOGENOM:HOG000246720 PIR:T40286
RefSeq:NP_595230.2 STRING:O43020 EnsemblFungi:SPBC354.06.1
GeneID:2541005 OrthoDB:EOG498Z9D NextBio:20802119 Uniprot:O43020
Length = 96
Score = 87 (35.7 bits), Expect = 0.00045, P = 0.00045
Identities = 21/61 (34%), Positives = 32/61 (52%)
Query: 6 QPIEQLGTFDPLPNEY--QEKL-----VSLNIERIRYWLGTSDIHITSPVRELFGLAGLF 58
+PIE +GTFDP+P + Q+ + + LN+ER +YW+ + VR L L
Sbjct: 32 KPIETIGTFDPIPKKIDSQDSIPRIKDIQLNVERFKYWISVG-AQPSDTVRSLAEKFQLL 90
Query: 59 P 59
P
Sbjct: 91 P 91
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.136 0.420 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 103 81 0.00091 102 3 11 22 0.42 29
29 0.42 30
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 17
No. of states in DFA: 535 (57 KB)
Total size of DFA: 111 KB (2075 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 8.82u 0.07s 8.89t Elapsed: 00:00:24
Total cpu time: 8.82u 0.07s 8.89t Elapsed: 00:00:25
Start: Thu Aug 15 14:16:41 2013 End: Thu Aug 15 14:17:06 2013