RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14541
(103 letters)
>gnl|CDD|129114 TIGR00002, S16, ribosomal protein S16. This model describes
ribosomal S16 of bacteria and organelles [Protein
synthesis, Ribosomal proteins: synthesis and
modification].
Length = 78
Score = 54.5 bits (132), Expect = 2e-11
Identities = 25/57 (43%), Positives = 33/57 (57%), Gaps = 4/57 (7%)
Query: 2 RRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGLAGLF 58
RR+ + IE+LG ++PL E V LN+ERI+YWL T VR L AG+F
Sbjct: 26 RRDGRYIEELGFYNPLTK---ESRVKLNVERIKYWLSKG-AQPTDTVRNLLKKAGVF 78
>gnl|CDD|216173 pfam00886, Ribosomal_S16, Ribosomal protein S16.
Length = 61
Score = 51.7 bits (125), Expect = 2e-10
Identities = 18/37 (48%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 2 RRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLG 38
R+ + IE+LGT++P+ QE V L+ ERI+YWLG
Sbjct: 20 PRDGRFIEELGTYNPIAKP-QEPEVKLDEERIKYWLG 55
>gnl|CDD|234588 PRK00040, rpsP, 30S ribosomal protein S16; Reviewed.
Length = 75
Score = 44.7 bits (107), Expect = 1e-07
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 1 MRRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLG 38
R+ + IE++G ++PL E+ V L+ ER+ YWLG
Sbjct: 26 SPRDGRFIERVGFYNPLAKP-AEEEVKLDEERVLYWLG 62
>gnl|CDD|223306 COG0228, RpsP, Ribosomal protein S16 [Translation, ribosomal
structure and biogenesis].
Length = 87
Score = 40.7 bits (96), Expect = 5e-06
Identities = 17/37 (45%), Positives = 25/37 (67%), Gaps = 2/37 (5%)
Query: 2 RRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLG 38
R+ + IE+LGT++PL + E+ V L+ ERI YWL
Sbjct: 27 PRDGRFIERLGTYNPLLGK--EERVKLDEERILYWLS 61
>gnl|CDD|176950 CHL00005, rps16, ribosomal protein S16.
Length = 82
Score = 35.8 bits (83), Expect = 4e-04
Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 5/36 (13%)
Query: 2 RRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWL 37
RR + +E++G +DP+ N+ LN+ I Y+L
Sbjct: 27 RREGRDLEKVGFYDPIKNQTY-----LNVPAILYFL 57
>gnl|CDD|172991 PRK14525, rpsP, 30S ribosomal protein S16; Provisional.
Length = 88
Score = 28.8 bits (64), Expect = 0.19
Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
Query: 3 RNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGT 39
R+ + +E +G +DP + E+ + L +ERI +WL
Sbjct: 29 RDGKYLEDVGIYDP--TKRPER-IELKVERIEHWLKA 62
>gnl|CDD|237744 PRK14521, rpsP, 30S ribosomal protein S16; Provisional.
Length = 186
Score = 29.4 bits (66), Expect = 0.23
Identities = 28/122 (22%), Positives = 46/122 (37%), Gaps = 28/122 (22%)
Query: 3 RNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGLAGLFPIYH 62
R+ + IE++GT++P N V LN +R YWL T R + G+ H
Sbjct: 29 RDGKFIEKIGTYNPNTNPAT---VDLNFDRAVYWLMNG-AQPTDTARNILSYEGVLLKKH 84
Query: 63 ---------------RTYMNAWRNR------NKAEAEIEKQKQEK---LKAEQEANQDKE 98
AW+ K + + +K K L+AE++ N+ +
Sbjct: 85 LLGGVAKGAFTEAQAEAKFEAWKEEKEGKVNAKKDKLSKAKKAAKKAALEAEKKVNEARA 144
Query: 99 AA 100
A
Sbjct: 145 EA 146
>gnl|CDD|184724 PRK14520, rpsP, 30S ribosomal protein S16; Provisional.
Length = 155
Score = 28.5 bits (64), Expect = 0.39
Identities = 11/37 (29%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Query: 2 RRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLG 38
+R+ + IE++G + P + + L+ ++ ER +YWL
Sbjct: 28 KRDGRAIEEIGRYHP---KEEPSLIEIDSERAQYWLS 61
>gnl|CDD|172990 PRK14524, rpsP, 30S ribosomal protein S16; Provisional.
Length = 94
Score = 27.9 bits (62), Expect = 0.47
Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 2 RRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGLAGLF 58
RR+ IE LG ++PL Y+ + +++ER W+ + VR++ G+
Sbjct: 27 RRDGAYIESLGYYNPLKEPYE---IKVDVERAVEWI-LKGAQPSDTVRDILRKFGVM 79
>gnl|CDD|187585 cd05324, carb_red_PTCR-like_SDR_c, Porcine testicular carbonyl
reductase (PTCR)-like, classical (c) SDRs. PTCR is a
classical SDR which catalyzes the NADPH-dependent
reduction of ketones on steroids and prostaglandins.
Unlike most SDRs, PTCR functions as a monomer. This
subgroup also includes human carbonyl reductase 1
(CBR1) and CBR3. CBR1 is an NADPH-dependent SDR with
broad substrate specificity and may be responsible for
the in vivo reduction of quinones, prostaglandins, and
other carbonyl-containing compounds. In addition it
includes poppy NADPH-dependent salutaridine reductase
which catalyzes the stereospecific reduction of
salutaridine to 7(S)-salutaridinol in the biosynthesis
of morphine, and Arabidopsis SDR1,a menthone reductase,
which catalyzes the reduction of menthone to
neomenthol, a compound with antimicrobial activity;
SDR1 can also carry out neomenthol oxidation. SDRs are
a functionally diverse family of oxidoreductases that
have a single domain with a structurally conserved
Rossmann fold (alpha/beta folding pattern with a
central beta-sheet), an NAD(P)(H)-binding region, and a
structurally diverse C-terminal region. Classical SDRs
are typically about 250 residues long, while extended
SDRs are approximately 350 residues. Sequence identity
between different SDR enzymes are typically in the
15-30% range, but the enzymes share the Rossmann fold
NAD-binding motif and characteristic NAD-binding and
catalytic sequence patterns. These enzymes catalyze a
wide range of activities including the metabolism of
steroids, cofactors, carbohydrates, lipids, aromatic
compounds, and amino acids, and act in redox sensing.
Classical SDRs have an TGXXX[AG]XG cofactor binding
motif and a YXXXK active site motif, with the Tyr
residue of the active site motif serving as a critical
catalytic residue (Tyr-151, 15-hydroxyprostaglandin
dehydrogenase (15-PGDH) numbering). In addition to the
Tyr and Lys, there is often an upstream Ser (Ser-138,
15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH
numbering) contributing to the active site; while
substrate binding is in the C-terminal region, which
determines specificity. The standard reaction mechanism
is a 4-pro-S hydride transfer and proton relay
involving the conserved Tyr and Lys, a water molecule
stabilized by Asn, and nicotinamide. Extended SDRs have
additional elements in the C-terminal region, and
typically have a TGXXGXXG cofactor binding motif.
Complex (multidomain) SDRs such as ketoreductase
domains of fatty acid synthase have a GGXGXXG
NAD(P)-binding motif and an altered active site motif
(YXXXN). Fungal type ketoacyl reductases have a
TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs
have lost catalytic activity and/or have an unusual
NAD(P)-binding motif and missing or unusual active site
residues. Reactions catalyzed within the SDR family
include isomerization, decarboxylation, epimerization,
C=N bond reduction, dehydratase activity,
dehalogenation, Enoyl-CoA reduction, and
carbonyl-alcohol oxidoreduction.
Length = 225
Score = 27.6 bits (62), Expect = 1.00
Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 3/37 (8%)
Query: 54 LAGLFPIYHRTYMNAWRNRNKAEAEIEKQKQEKLKAE 90
LA P + A R+ + +A +EK + E L
Sbjct: 20 LAKSGP--GTVILTA-RDVERGQAAVEKLRAEGLSVR 53
>gnl|CDD|215342 PLN02636, PLN02636, acyl-coenzyme A oxidase.
Length = 686
Score = 27.1 bits (60), Expect = 1.6
Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 4 NDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIH 43
N Q ++ TFDPL +E+ + + N I++W+G + +H
Sbjct: 187 NVQGLQTTATFDPLTDEFV--INTPNDGAIKWWIGNAAVH 224
>gnl|CDD|225625 COG3083, COG3083, Predicted hydrolase of alkaline phosphatase
superfamily [General function prediction only].
Length = 600
Score = 27.0 bits (60), Expect = 1.7
Identities = 18/72 (25%), Positives = 28/72 (38%), Gaps = 5/72 (6%)
Query: 14 FDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGLAGLFPIYHRTYMNAWRNRN 73
+D L + L + IR+ H +S GL GLF TY ++ +
Sbjct: 272 YDALDEKQMPNLADFANQNIRF-----TNHYSSGNSTQAGLFGLFYGLSATYWDSVLSAR 326
Query: 74 KAEAEIEKQKQE 85
A IE +Q+
Sbjct: 327 TPPALIEALRQQ 338
>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein. TolA couples the inner
membrane complex of itself with TolQ and TolR to the
outer membrane complex of TolB and OprL (also called
Pal). Most of the length of the protein consists of
low-complexity sequence that may differ in both length
and composition from one species to another,
complicating efforts to discriminate TolA (the most
divergent gene in the tol-pal system) from paralogs such
as TonB. Selection of members of the seed alignment and
criteria for setting scoring cutoffs are based largely
conserved operon struction. //The Tol-Pal complex is
required for maintaining outer membrane integrity. Also
involved in transport (uptake) of colicins and
filamentous DNA, and implicated in pathogenesis.
Transport is energized by the proton motive force. TolA
is an inner membrane protein that interacts with
periplasmic TolB and with outer membrane porins ompC,
phoE and lamB [Transport and binding proteins, Other,
Cellular processes, Pathogenesis].
Length = 346
Score = 26.7 bits (59), Expect = 2.3
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 74 KAEAEIEKQKQEKLKAEQEANQDKEAASSA 103
KAEAE EK+ +E+ K + E +AA+ A
Sbjct: 135 KAEAEAEKKAKEEAKKQAEEEAKAKAAAEA 164
Score = 25.2 bits (55), Expect = 8.5
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 74 KAEAEIEKQKQEKLKAEQEANQDKEAASSA 103
KAE K + K KA EA EA ++A
Sbjct: 190 KAEEAKAKAEAAKAKAAAEAAAKAEAEAAA 219
>gnl|CDD|222812 PHA00727, PHA00727, hypothetical protein.
Length = 278
Score = 26.8 bits (59), Expect = 2.4
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 62 HRTYMNAWRNRNKAEAEIEKQKQEKLKAEQEANQDK 97
+T ++ K E E++KQ+ E+LKAE + K
Sbjct: 37 GKTLKRLYKVYEKREFELKKQQFEQLKAELSKKKKK 72
>gnl|CDD|220369 pfam09731, Mitofilin, Mitochondrial inner membrane protein.
Mitofilin controls mitochondrial cristae morphology.
Mitofilin is enriched in the narrow space between the
inner boundary and the outer membranes, where it forms a
homotypic interaction and assembles into a large
multimeric protein complex. The first 78 amino acids
contain a typical amino-terminal-cleavable mitochondrial
presequence rich in positive-charged and hydroxylated
residues and a membrane anchor domain. In addition, it
has three centrally located coiled coil domains.
Length = 493
Score = 26.1 bits (58), Expect = 3.6
Identities = 11/39 (28%), Positives = 16/39 (41%), Gaps = 3/39 (7%)
Query: 66 MNAWRNRNKAE-AEIEKQKQEKLKAEQEANQDKEAASSA 103
R + E E+ K+ +EKL+ E E EA
Sbjct: 221 EKQLRLEFEREKEELRKKYEEKLRQELERQ--AEAHEQK 257
>gnl|CDD|185681 cd09286, NMNAT_Eukarya, Nicotinamide/nicotinate mononucleotide
adenylyltransferase, Eukaryotic.
Nicotinamide/nicotinate mononucleotide (NMN/
NaMN)adenylyltransferase (NMNAT). NMNAT represents the
primary bacterial and eukaryotic adenylyltransferases
for nicotinamide-nucleotide and for the deamido form,
nicotinate nucleotide. It is an indispensable enzyme
in the biosynthesis of NAD(+) and NADP(+).
Nicotinamide-nucleotide adenylyltransferase synthesizes
NAD via the salvage pathway, while
nicotinate-nucleotide adenylyltransferase synthesizes
the immediate precursor of NAD via the de novo pathway.
Human NMNAT displays unique dual substrate specificity
toward both NMN and NaMN, and can participate in both
de novo and salvage pathways of NAD synthesis. This
subfamily consists strictly of eukaryotic members and
includes secondary structural elements not found in all
NMNATs.
Length = 225
Score = 26.1 bits (58), Expect = 3.7
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 44 ITSPVRELFGLAGLFPIYHRTYM 66
I SPV + +G GL HR M
Sbjct: 39 IISPVNDAYGKKGLASAKHRVAM 61
>gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682). The
members of this family are all hypothetical eukaryotic
proteins of unknown function. One member is described as
being an adipocyte-specific protein, but no evidence of
this was found.
Length = 322
Score = 26.1 bits (58), Expect = 4.2
Identities = 9/31 (29%), Positives = 16/31 (51%), Gaps = 3/31 (9%)
Query: 70 RNRNKAEAEIEKQKQEKLKAEQEANQDKEAA 100
+ R + E +I K +E+ QE Q+K+
Sbjct: 263 KTREEEEEKILKAAEEE---RQEEAQEKKEE 290
>gnl|CDD|237101 PRK12430, PRK12430, putative bifunctional flagellar biosynthesis
protein FliO/FliP; Provisional.
Length = 379
Score = 26.0 bits (57), Expect = 4.4
Identities = 8/43 (18%), Positives = 23/43 (53%)
Query: 3 RNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHIT 45
+ ++ I ++ + L E ++ + I+++R LG + +I+
Sbjct: 51 KINKIISRMKIIERLSLGSNESIIIVEIKQLRLVLGVTKKNIS 93
>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein
TolA; Provisional.
Length = 387
Score = 25.9 bits (57), Expect = 4.5
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 74 KAEAEIEKQKQEKLKAEQEANQDKEAASSA 103
KA AE +K+ + + + A K+A + A
Sbjct: 162 KAAAEAKKKAEAEAAKKAAAEAKKKAEAEA 191
>gnl|CDD|148752 pfam07324, DGCR6, DiGeorge syndrome critical region 6 (DGCR6)
protein. This family contains DiGeorge syndrome
critical region 6 (DGCR6) proteins (approximately 200
residues long) of a number of vertebrates. DGCR6 is a
candidate for involvement in the DiGeorge syndrome
pathology by playing a role in neural crest cell
migration into the third and fourth pharyngeal pouches,
the structures from which derive the organs affected in
DiGeorge syndrome. Also found in this family is the
Drosophila melanogaster gonadal protein gdl.
Length = 195
Score = 25.6 bits (56), Expect = 5.1
Identities = 14/40 (35%), Positives = 18/40 (45%)
Query: 56 GLFPIYHRTYMNAWRNRNKAEAEIEKQKQEKLKAEQEANQ 95
GL I H T N + R K E KQ+ K +EA +
Sbjct: 66 GLLEIQHLTEKNLYNQRMKVHNEHRVLKQDLRKKHKEAEE 105
>gnl|CDD|235287 PRK04342, PRK04342, DNA topoisomerase VI subunit A; Provisional.
Length = 367
Score = 25.6 bits (57), Expect = 5.4
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 78 EIEKQKQEKLKAEQEA 93
EI + KAEQ+A
Sbjct: 327 EINLFLKIGKKAEQQA 342
>gnl|CDD|241373 cd13219, PH-GRAM_C2-GRAM, C2 and GRAM domain-containing protein
Pleckstrin Homology-Glucosyltransferases, Rab-like
GTPase activators and Myotubularins (PH-GRAM) domain.
C2GRAM contains two N-terminal C2 domains followed by a
single PH-GRAM domain. Since it contains both of these
domains it is assumed that this gene cross-links both
calcium and phosphoinositide signaling pathways. In
general he C2 domain is involved in binding
phospholipids in a calcium dependent manner or calcium
independent manner. The GRAM domain is found in
glucosyltransferases, myotubularins and other putative
membrane-associated proteins. The GRAM domain is part of
a larger motif with a pleckstrin homology (PH) domain
fold.
Length = 161
Score = 25.3 bits (56), Expect = 5.6
Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 5/31 (16%)
Query: 62 HRTYMNAWRNRNKAEAEIEKQKQEKLKAEQE 92
RT M W+NR+ E++KQ E E
Sbjct: 135 FRTIMALWKNRS---LSPEQKKQI--VEESE 160
>gnl|CDD|129965 TIGR00887, 2A0109, phosphate:H+ symporter. This model represents
the phosphate uptake symporter subfamily of the major
facilitator superfamily (pfam00083) [Transport and
binding proteins, Anions].
Length = 502
Score = 25.5 bits (56), Expect = 5.7
Identities = 9/34 (26%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Query: 70 RNRNKAEAEIEKQKQEKLKAEQEANQDKEAASSA 103
++ +A +++ Q K++AE + + E AS+A
Sbjct: 236 KDVEQAASDMSAVLQVKIEAEPD---EVEKASTA 266
>gnl|CDD|239591 cd03514, CrtR_beta-carotene-hydroxylase, Beta-carotene
hydroxylase (CrtR), the carotenoid zeaxanthin
biosynthetic enzyme catalyzes the addition of hydroxyl
groups to the beta-ionone rings of beta-carotene to
form zeaxanthin and is found in bacteria and red algae.
Carotenoids are important natural pigments; zeaxanthin
and lutein are the only dietary carotenoids that
accumulate in the macular region of the retina and
lens. It is proposed that these carotenoids protect
ocular tissues against photooxidative damage. CrtR does
not show overall amino acid sequence similarity to the
beta-carotene hydroxylases similar to CrtZ, an
astaxanthin biosynthetic beta-carotene hydroxylase.
However, CrtR does show sequence similarity to the
green alga, Haematococcus pluvialis, beta-carotene
ketolase (CrtW), which converts beta-carotene to
canthaxanthin. Sequences of the
CrtR_beta-carotene-hydroxylase domain family, as well
as, the CrtW_beta-carotene-ketolase domain family
appear to be structurally related to membrane fatty
acid desaturases and alkane hydroxylases. They all
share in common extensive hydrophobic regions that
would be capable of spanning the membrane bilayer at
least twice. Comparison of these sequences also reveals
three regions of conserved histidine cluster motifs
that contain eight histidine residues: HXXXH, HXXHH,
and HXXHH. These histidine residues are reported to be
catalytically essential and proposed to be the ligands
for the iron atoms contained within homologs, stearoyl
CoA desaturase and alkane hydroxylase.
Length = 207
Score = 25.4 bits (56), Expect = 5.7
Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 6/48 (12%)
Query: 29 NIERIRYWLGTSDIHITSPVRELFGLAGLFPIYHRTYMNAWRNRNKAE 76
R R W+ H++ F L FP++ R +M + N E
Sbjct: 49 AASRNR-WINELIGHVS-----AFFLGFPFPVFRRVHMQHHAHTNDPE 90
>gnl|CDD|235334 PRK05035, PRK05035, electron transport complex protein RnfC;
Provisional.
Length = 695
Score = 25.7 bits (57), Expect = 6.2
Identities = 10/17 (58%), Positives = 13/17 (76%)
Query: 75 AEAEIEKQKQEKLKAEQ 91
A+AEI +QEK KAE+
Sbjct: 434 AKAEIRAIEQEKKKAEE 450
>gnl|CDD|182791 PRK10865, PRK10865, protein disaggregation chaperone; Provisional.
Length = 857
Score = 25.6 bits (56), Expect = 6.5
Identities = 13/56 (23%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 8 IEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTS--DIHITSPVRELFGLAGLFPIY 61
I+++ F PL ++ + + ++R+ L +IHI+ +L G P+Y
Sbjct: 757 IDEVVVFHPLGEQHIASIAQIQLQRLYKRLEERGYEIHISDEALKLLSENGYDPVY 812
>gnl|CDD|235999 PRK07353, PRK07353, F0F1 ATP synthase subunit B'; Validated.
Length = 140
Score = 25.0 bits (55), Expect = 7.0
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 74 KAEAEIEKQKQEKL-KAEQEANQDKEAA 100
+AEAE +K E L +A+ EA KE A
Sbjct: 79 EAEAEADKLAAEALAEAQAEAQASKEKA 106
>gnl|CDD|206063 pfam13892, DBINO, DNA-binding domain. DBINO is a DNA-binding
domain found on global transcription activator SNF2L1
proteins and chromatin re-modelling proteins.
Length = 140
Score = 24.9 bits (55), Expect = 7.2
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
Query: 63 RTYMNAWRNRNKAEAEI----EKQKQEKLKAEQE 92
R + W+ K E E+ EK+ E+ K E+E
Sbjct: 72 REMLLFWKKNEKEERELRKRAEKEALEQAKKEEE 105
>gnl|CDD|132995 cd00218, GlcAT-I, Beta1,3-glucuronyltransferase I (GlcAT-I) is
involved in the initial steps of proteoglycan
synthesis. Beta1,3-glucuronyltransferase I (GlcAT-I)
domain; GlcAT-I is a Key enzyme involved in the initial
steps of proteoglycan synthesis. GlcAT-I catalyzes the
transfer of a glucuronic acid moiety from the uridine
diphosphate-glucuronic acid (UDP-GlcUA) to the common
linkage region of trisaccharide
Gal-beta-(1-3)-Gal-beta-(1-4)-Xyl of proteoglycans.
The enzyme has two subdomains that bind the donor and
acceptor substrate separately. The active site is
located at the cleft between both subdomains in which
the trisaccharide molecule is oriented perpendicular to
the UDP. This family has been classified as
Glycosyltransferase family 43 (GT-43).
Length = 223
Score = 24.9 bits (55), Expect = 8.0
Identities = 6/23 (26%), Positives = 7/23 (30%)
Query: 67 NAWRNRNKAEAEIEKQKQEKLKA 89
RN A I + KL
Sbjct: 75 RGVEQRNLALRWIREHLSAKLDG 97
>gnl|CDD|222087 pfam13379, NMT1_2, NMT1-like family. This family is closely
related to the pfam09084 family.
Length = 248
Score = 24.9 bits (55), Expect = 8.1
Identities = 5/17 (29%), Positives = 8/17 (47%)
Query: 33 IRYWLGTSDIHITSPVR 49
+RYWL + + V
Sbjct: 134 LRYWLAAGGLDPDADVL 150
>gnl|CDD|220431 pfam09831, DUF2058, Uncharacterized protein conserved in bacteria
(DUF2058). This domain, found in various prokaryotic
proteins, has no known function.
Length = 177
Score = 24.5 bits (54), Expect = 10.0
Identities = 7/26 (26%), Positives = 15/26 (57%)
Query: 75 AEAEIEKQKQEKLKAEQEANQDKEAA 100
+ E+ K EK + ++E N+ ++A
Sbjct: 42 LKQAAEEAKAEKAERDRELNRQRQAE 67
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.314 0.130 0.376
Gapped
Lambda K H
0.267 0.0812 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,278,880
Number of extensions: 448619
Number of successful extensions: 1031
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1005
Number of HSP's successfully gapped: 142
Length of query: 103
Length of database: 10,937,602
Length adjustment: 69
Effective length of query: 34
Effective length of database: 7,877,176
Effective search space: 267823984
Effective search space used: 267823984
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (24.0 bits)