RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14541
         (103 letters)



>d2uubp1 d.27.1.1 (P:1-83) Ribosomal protein S16 {Thermus
          thermophilus [TaxId: 274]}
          Length = 83

 Score = 48.1 bits (115), Expect = 1e-09
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 3/58 (5%)

Query: 2  RRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGLAGLFP 59
          +R+ + IE++G +DP         + +++ER RYWL       T   R L   AG+F 
Sbjct: 27 KRDGKYIEKIGYYDPRKTT--PDWLKVDVERARYWLSVG-AQPTDTARRLLRQAGVFR 81


>d2gy9p1 d.27.1.1 (P:1-78) Ribosomal protein S16 {Escherichia coli
          [TaxId: 562]}
          Length = 78

 Score = 41.2 bits (97), Expect = 6e-07
 Identities = 17/51 (33%), Positives = 31/51 (60%), Gaps = 2/51 (3%)

Query: 2  RRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELF 52
           RN + IE++G F+P+ +E +E+   L+++RI +W+G     I+  V  L 
Sbjct: 27 ARNGRFIERVGFFNPIASE-KEEGTRLDLDRIAHWVGQG-ATISDRVAALI 75


>d3bn0a1 d.27.1.1 (A:2-102) Ribosomal protein S16 {Aquifex
          aeolicus [TaxId: 63363]}
          Length = 101

 Score = 40.2 bits (94), Expect = 3e-06
 Identities = 12/85 (14%), Positives = 29/85 (34%), Gaps = 12/85 (14%)

Query: 2  RRNDQPIEQLGTFDPLPNEYQEKLVSLNIERIRYWLGTSDIHITSPVRELFGLAGLFPIY 61
           R  + I+ LGT+DP           +  E+++ W+    + ++   + +    G+    
Sbjct: 27 PREGKYIDILGTYDPKRKVLIN----VYPEKVKEWVLKG-VELSHRAKAILWNHGILK-- 79

Query: 62 HRTYMNAWRNRNKAEAEIEKQKQEK 86
                      + +   +    EK
Sbjct: 80 -----EVVPEGYEMKRVGDYYVFEK 99


>d3d03a1 d.159.1.11 (A:1-271) Glycerophosphodiesterase GpdQ
          {Enterobacter aerogenes [TaxId: 548]}
          Length = 271

 Score = 23.9 bits (50), Expect = 5.3
 Identities = 8/39 (20%), Positives = 13/39 (33%)

Query: 39 TSDIHITSPVRELFGLAGLFPIYHRTYMNAWRNRNKAEA 77
           SD H  S   +L+G   +              R + +A
Sbjct: 6  ISDTHFRSRGEKLYGFIDVNAANADVVSQLNALRERPDA 44


>d1ax8a_ a.26.1.1 (A:) Leptin (obesity protein) {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 144

 Score = 23.2 bits (50), Expect = 5.8
 Identities = 8/24 (33%), Positives = 10/24 (41%)

Query: 5  DQPIEQLGTFDPLPNEYQEKLVSL 28
            PI  L   D     YQ+ L S+
Sbjct: 43 LHPILTLSKMDQTLAVYQQILTSM 66


>d1d3ya_ e.12.1.1 (A:) DNA topoisomerase IV, alpha subunit {Archaeon
           Methanococcus jannaschii [TaxId: 2190]}
          Length = 298

 Score = 23.8 bits (51), Expect = 6.0
 Identities = 4/24 (16%), Positives = 14/24 (58%)

Query: 70  RNRNKAEAEIEKQKQEKLKAEQEA 93
           R+  + +  +++     ++AEQ++
Sbjct: 249 RSFPEWQKALKQMLDMGVRAEQQS 272


>d1siqa1 a.29.3.1 (A:239-392) Glutaryl-CoA dehydrogenase GCDH {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 154

 Score = 23.4 bits (49), Expect = 6.4
 Identities = 9/27 (33%), Positives = 14/27 (51%)

Query: 29  NIERIRYWLGTSDIHITSPVRELFGLA 55
           N+E +  + GT DIH     R + G+ 
Sbjct: 124 NLEAVNTYEGTHDIHALILGRAITGIQ 150


>d1xo1a1 a.60.7.1 (A:186-290) T5 5'-exonuclease {Bacteriophage T5
          [TaxId: 10726]}
          Length = 105

 Score = 22.6 bits (48), Expect = 8.8
 Identities = 5/45 (11%), Positives = 16/45 (35%)

Query: 53 GLAGLFPIYHRTYMNAWRNRNKAEAEIEKQKQEKLKAEQEANQDK 97
          G+ G+        +  + N      ++    ++K      A+++ 
Sbjct: 23 GVEGIGAKRGYNIIREFGNVLDIIDQLPLPGKQKYIQNLNASEEL 67


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.314    0.130    0.376 

Gapped
Lambda     K      H
   0.267   0.0399    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 376,223
Number of extensions: 16054
Number of successful extensions: 67
Number of sequences better than 10.0: 1
Number of HSP's gapped: 62
Number of HSP's successfully gapped: 23
Length of query: 103
Length of database: 2,407,596
Length adjustment: 64
Effective length of query: 39
Effective length of database: 1,528,876
Effective search space: 59626164
Effective search space used: 59626164
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 47 (22.8 bits)