BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14542
(371 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2V5R|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5R|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 391
Score = 96.3 bits (238), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 55/149 (36%), Positives = 83/149 (55%), Gaps = 7/149 (4%)
Query: 165 DGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTEN-KRLLSAA 223
DGKY +L SGEL I +V D Y+SYQCR ++LTG + LS +GRL +TE +
Sbjct: 157 DGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPVGSVRPKV 216
Query: 224 KMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYK------QDSPVEESDRIQRIGSSLS 277
+KH+ ++V+ S L C AQ P P+ +WYK + V +DR++++ +L
Sbjct: 217 NPQDKHQFIDVELASSYSLLCMAQSYPTPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLI 276
Query: 278 ISHVEESDSGVWNCVANNSEGQDKMQLFI 306
I DSG + CV NNS G + ++ +
Sbjct: 277 IKDAVVEDSGKYLCVVNNSVGGESVETVL 305
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 55/94 (58%), Gaps = 3/94 (3%)
Query: 1 MQLFIQVKSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEV 60
++ + V + LS ++ P Q V D G C+ + + + +W+KDG + +S+ V
Sbjct: 301 VETVLTVTAPLSAKIDPPTQTV-DFGRPAVFTCQYTGNPIKTV-SWMKDGKAIG-HSESV 357
Query: 61 LVLDRVQREDAGMYQCHVSADDDSAQMSAQVILG 94
L ++ V++ED GMYQC V D +SA+ SA++ LG
Sbjct: 358 LRIESVKKEDKGMYQCFVRNDRESAEASAELKLG 391
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 54/117 (46%), Gaps = 2/117 (1%)
Query: 60 VLVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGELVEIASSNQVVVDVGHRIELHCR 119
L++ ED+G Y C V+ + + + L VD G C+
Sbjct: 274 TLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQ 333
Query: 120 VSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGEL 176
+ + + +W+KDG + +S+ VL ++ V++ED GMYQC + + + +S EL
Sbjct: 334 YTGNPIKTV-SWMKDGKAIG-HSESVLRIESVKKEDKGMYQCFVRNDRESAEASAEL 388
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 53/123 (43%), Gaps = 17/123 (13%)
Query: 173 SGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRIL 232
SG LII D + Y C N + G S+ +V LT L +AK+ + +
Sbjct: 272 SGTLIIKDAVVEDSGK-YLCVVNNSVGGESVETV------LTVTAPL--SAKIDPPTQTV 322
Query: 233 NVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCV 292
+ + + C GNP+ T+ W K + S+ + RI S V++ D G++ C
Sbjct: 323 DFGR--PAVFTCQYTGNPIKTVSWMKDGKAIGHSESVLRIES------VKKEDKGMYQCF 374
Query: 293 ANN 295
N
Sbjct: 375 VRN 377
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 9/64 (14%)
Query: 244 CSAQGNPLPTIKWYKQD-SPVEESDRIQRIGSSLSI--------SHVEESDSGVWNCVAN 294
C A GNP+P I W + D + V + +++I S + + +E + V+ C+A
Sbjct: 26 CKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLAR 85
Query: 295 NSEG 298
N G
Sbjct: 86 NQFG 89
>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|B Chain B, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|C Chain C, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
Length = 816
Score = 94.4 bits (233), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 91/176 (51%), Gaps = 15/176 (8%)
Query: 142 SDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGA 201
+D V V+ E+ + DGKY +L SGEL I +V D Y+SYQCR ++LTG
Sbjct: 167 ADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGE 226
Query: 202 SLLSVNRGRLSLTEN-----KRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKW 256
+ LS +GRL +TE +++S AK K ++ L C AQG P+P +W
Sbjct: 227 TRLSATKGRLVITEPISSAVPKVVSLAKFDMK----TYSGSSTMALLCPAQGYPVPVFRW 282
Query: 257 YK------QDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFI 306
YK + V +DR++++ +L I DSG + CV NNS G + ++ +
Sbjct: 283 YKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVL 338
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 83/308 (26%), Positives = 139/308 (45%), Gaps = 47/308 (15%)
Query: 1 MQLFIQVKSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEV 60
++ + V + LS ++ P Q V D G C+ + + + +W+KDG + +S+ V
Sbjct: 334 VETVLTVTAPLSAKIDPPTQTV-DFGRPAVFTCQYTGNPIKTV-SWMKDGKAIG-HSESV 390
Query: 61 LVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGEL---VEIASSNQVVVDVGHRIELH 117
L ++ V++ED GMYQC V D +SA+ SA++ LGG V + + ++ G + L
Sbjct: 391 LRIESVKKEDKGMYQCFVRNDRESAEASAELKLGGRFDPPVIRQAFQEETMEPGPSVFLK 450
Query: 118 CRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELI 177
C V+ + +W DG + N DR Q G Y + +G+++
Sbjct: 451 C-VAGGNPTPEISWELDGKKIANN-------DRYQ---VGQY----------VTVNGDVV 489
Query: 178 ----IHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILN 233
I V +D G+ K S + V L N L + EK I+
Sbjct: 490 SYLNITSVHAND-------GGLYKCIAKSKVGVAEHSAKL--NVYGLPYIRQMEKKAIV- 539
Query: 234 VKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI--GSSLSISHVE-ESDSGVWN 290
E++I+ C G P+ +I W ++D+ +R Q++ +L I +VE SD +
Sbjct: 540 --AGETLIVTCPVAGYPIDSIVW-ERDNRALPINRKQKVFPNGTLIIENVERNSDQATYT 596
Query: 291 CVANNSEG 298
CVA N EG
Sbjct: 597 CVAKNQEG 604
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 59/248 (23%), Positives = 98/248 (39%), Gaps = 49/248 (19%)
Query: 60 VLVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGELVEIASSNQVVVDVGHRIELHCR 119
L++ ED+G Y C V+ + + + L VD G C+
Sbjct: 307 TLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQ 366
Query: 120 VSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIH 179
+ + + +W+KDG + +S+ VL ++ V++ED GMYQC + + + +S EL
Sbjct: 367 YTGNPIKTV-SWMKDGKAIG-HSESVLRIESVKKEDKGMYQCFVRNDRESAEASAEL--- 421
Query: 180 QVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDES 239
KL G V R + F++ ++ S
Sbjct: 422 -----------------KLGGRFDPPVIR---------------QAFQEE---TMEPGPS 446
Query: 240 VILPCSAQGNPLPTIKWYKQDSPVEESDRIQ---------RIGSSLSISHVEESDSGVWN 290
V L C A GNP P I W + +DR Q + S L+I+ V +D G++
Sbjct: 447 VFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYK 506
Query: 291 CVANNSEG 298
C+A + G
Sbjct: 507 CIAKSKVG 514
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 62/261 (23%), Positives = 106/261 (40%), Gaps = 42/261 (16%)
Query: 50 GLVLRRNSDEV--LVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGELVEIASSNQVV 107
G + N D V L + V D G+Y+C + A+ SA++ + G L I +
Sbjct: 479 GQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYG-LPYIRQMEKKA 537
Query: 108 VDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGK 167
+ G + + C V+ + D +V R+ + L ++R Q+
Sbjct: 538 IVAGETLIVTCPVA--------GYPIDSIVWERD-NRALPINRKQK-------------- 574
Query: 168 YHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFE 227
+ +G LII V+ + +Y C N+ ++ S+ + L R++ A FE
Sbjct: 575 --VFPNGTLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVL---PRIIPFA--FE 627
Query: 228 KHRILNVKKDESVILPCSAQGNPLP-TIKWYKQDSPVEE-----SDRIQRIGSSLSISHV 281
+ + + + L CS G LP I W + E + R+ R GS L+I V
Sbjct: 628 EGP---AQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAV 684
Query: 282 EESDSGVWNCVANNSEGQDKM 302
E S +G + C A N G +
Sbjct: 685 EASHAGNFTCHARNLAGHQQF 705
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 63/303 (20%), Positives = 108/303 (35%), Gaps = 76/303 (25%)
Query: 26 GHRIELHCRVSPKRLSSAKAWLKDGLVLRRN------SDEVLVLDRVQRE-DAGMYQCHV 78
G + + C V+ + S W +D L N + L+++ V+R D Y C V
Sbjct: 541 GETLIVTCPVAGYPIDSI-VWERDNRALPINRKQKVFPNGTLIIENVERNSDQATYTC-V 598
Query: 79 SADDDS----AQMSAQVILGGELVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKD 134
+ + + + QV++ ++ A + VG + LHC V L W D
Sbjct: 599 AKNQEGYSARGSLEVQVMVLPRIIPFAFE-EGPAQVGQYLTLHCSVPGGDLPLNIDWTLD 657
Query: 135 GLVL------------RRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVD 182
G + RR S VL ++ V+ AG + CH + H + L ++
Sbjct: 658 GQAISEDLGITTSRVGRRGS--VLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVY--- 712
Query: 183 ESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVIL 242
+ L K F + V+
Sbjct: 713 ------------------------------VPPRWILEPTDKAFAQGSDAKVE------- 735
Query: 243 PCSAQGNPLPTIKWYKQ--DSPVE-----ESDRIQRIGSSLSISHVEESDSGVWNCVANN 295
C A G P P + W K D+P E +SD I+ +L + ++++++ G + C A N
Sbjct: 736 -CKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVEEGTLHVDNIQKTNEGYYLCEAIN 794
Query: 296 SEG 298
G
Sbjct: 795 GIG 797
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 9/64 (14%)
Query: 244 CSAQGNPLPTIKWYKQD-SPVEESDRIQRIGSSLSI--------SHVEESDSGVWNCVAN 294
C A GNP+P I W + D + V + +++I S + + +E + V+ C+A
Sbjct: 61 CKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLAR 120
Query: 295 NSEG 298
N G
Sbjct: 121 NQFG 124
>pdb|2V5S|A Chain A, Structural Basis For Dscam Isoform Specificity
pdb|2V5S|B Chain B, Structural Basis For Dscam Isoform Specificity
Length = 394
Score = 93.6 bits (231), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 80/148 (54%), Gaps = 6/148 (4%)
Query: 165 DGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAK 224
DGKY +L SGEL I +V D Y+SYQCR ++LTG + LS +GRL +TE +
Sbjct: 161 DGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRT 220
Query: 225 MFEKHRILNVKKDESVILPCSAQGNPLPTIKWYK------QDSPVEESDRIQRIGSSLSI 278
+ L + ++ L C AQG P P+ +WYK + V +DR++++ +L I
Sbjct: 221 PALVQKPLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLII 280
Query: 279 SHVEESDSGVWNCVANNSEGQDKMQLFI 306
DSG + CV NNS G + ++ +
Sbjct: 281 KDAVVEDSGKYLCVVNNSVGGESVETVL 308
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 55/94 (58%), Gaps = 3/94 (3%)
Query: 1 MQLFIQVKSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEV 60
++ + V + LS ++ P Q V D G C+ + + + +W+KDG + +S+ V
Sbjct: 304 VETVLTVTAPLSAKIDPPTQTV-DFGRPAVFTCQYTGNPIKTV-SWMKDGKAIG-HSESV 360
Query: 61 LVLDRVQREDAGMYQCHVSADDDSAQMSAQVILG 94
L ++ V++ED GMYQC V D +SA+ SA++ LG
Sbjct: 361 LRIESVKKEDKGMYQCFVRNDRESAEASAELKLG 394
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 71/165 (43%), Gaps = 18/165 (10%)
Query: 25 VGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVL-DRVQR------------EDA 71
V H I L C P + A ++ + + +VL DRV++ ED+
Sbjct: 232 VAHTISLLC---PAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDS 288
Query: 72 GMYQCHVSADDDSAQMSAQVILGGELVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAW 131
G Y C V+ + + + L VD G C+ + + + +W
Sbjct: 289 GKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTV-SW 347
Query: 132 LKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGEL 176
+KDG + +S+ VL ++ V++ED GMYQC + + + +S EL
Sbjct: 348 MKDGKAIG-HSESVLRIESVKKEDKGMYQCFVRNDRESAEASAEL 391
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 53/123 (43%), Gaps = 17/123 (13%)
Query: 173 SGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRIL 232
SG LII D + Y C N + G S+ +V LT L +AK+ + +
Sbjct: 275 SGTLIIKDAVVEDSGK-YLCVVNNSVGGESVETV------LTVTAPL--SAKIDPPTQTV 325
Query: 233 NVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCV 292
+ + + C GNP+ T+ W K + S+ + RI S V++ D G++ C
Sbjct: 326 DFGR--PAVFTCQYTGNPIKTVSWMKDGKAIGHSESVLRIES------VKKEDKGMYQCF 377
Query: 293 ANN 295
N
Sbjct: 378 VRN 380
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 9/64 (14%)
Query: 244 CSAQGNPLPTIKWYKQD-SPVEESDRIQRIGSSLSI--------SHVEESDSGVWNCVAN 294
C A GNP+P I W + D + V + +++I S + + +E + V+ C+A
Sbjct: 32 CKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLAR 91
Query: 295 NSEG 298
N G
Sbjct: 92 NQFG 95
>pdb|2V5M|A Chain A, Structural Basis For Dscam Isoform Specificity
Length = 388
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 80/148 (54%), Gaps = 6/148 (4%)
Query: 165 DGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAK 224
DGKY +L SGEL I +V D Y+SYQCR ++LTG + LS +GRL +TE +
Sbjct: 155 DGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRT 214
Query: 225 MFEKHRILNVKKDESVILPCSAQGNPLPTIKWYK------QDSPVEESDRIQRIGSSLSI 278
+ L + ++ L C AQG P P+ +WYK + V +DR++++ +L I
Sbjct: 215 PALVQKPLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLII 274
Query: 279 SHVEESDSGVWNCVANNSEGQDKMQLFI 306
DSG + CV NNS G + ++ +
Sbjct: 275 KDAVVEDSGKYLCVVNNSVGGESVETVL 302
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 55/94 (58%), Gaps = 3/94 (3%)
Query: 1 MQLFIQVKSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEV 60
++ + V + LS ++ P Q V D G C+ + + + +W+KDG + +S+ V
Sbjct: 298 VETVLTVTAPLSAKIDPPTQTV-DFGRPAVFTCQYTGNPIKTV-SWMKDGKAIG-HSESV 354
Query: 61 LVLDRVQREDAGMYQCHVSADDDSAQMSAQVILG 94
L ++ V++ED GMYQC V D +SA+ SA++ LG
Sbjct: 355 LRIESVKKEDKGMYQCFVRNDRESAEASAELKLG 388
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 71/165 (43%), Gaps = 18/165 (10%)
Query: 25 VGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVL-DRVQR------------EDA 71
V H I L C P + A ++ + + +VL DRV++ ED+
Sbjct: 226 VAHTISLLC---PAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDS 282
Query: 72 GMYQCHVSADDDSAQMSAQVILGGELVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAW 131
G Y C V+ + + + L VD G C+ + + + +W
Sbjct: 283 GKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTV-SW 341
Query: 132 LKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGEL 176
+KDG + +S+ VL ++ V++ED GMYQC + + + +S EL
Sbjct: 342 MKDGKAIG-HSESVLRIESVKKEDKGMYQCFVRNDRESAEASAEL 385
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 53/123 (43%), Gaps = 17/123 (13%)
Query: 173 SGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRIL 232
SG LII D + Y C N + G S+ +V LT L +AK+ + +
Sbjct: 269 SGTLIIKDAVVEDSGK-YLCVVNNSVGGESVETV------LTVTAPL--SAKIDPPTQTV 319
Query: 233 NVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCV 292
+ + + C GNP+ T+ W K + S+ + RI S V++ D G++ C
Sbjct: 320 DFGR--PAVFTCQYTGNPIKTVSWMKDGKAIGHSESVLRIES------VKKEDKGMYQCF 371
Query: 293 ANN 295
N
Sbjct: 372 VRN 374
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 9/64 (14%)
Query: 244 CSAQGNPLPTIKWYKQD-SPVEESDRIQRIGSSLSI--------SHVEESDSGVWNCVAN 294
C A GNP+P I W + D + V + +++I S + + +E + V+ C+A
Sbjct: 26 CKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLAR 85
Query: 295 NSEG 298
N G
Sbjct: 86 NQFG 89
>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4
pdb|3JXA|B Chain B, Immunoglobulin Domains 1-4 Of Mouse Cntn4
Length = 383
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 68/301 (22%), Positives = 113/301 (37%), Gaps = 64/301 (21%)
Query: 21 VVVDVGHRIELHCRVSPKRLSSAKAWL-------KDGLVLRRNSDEVLVLDRVQREDAGM 73
V V G + L C P + AW+ +D L + +V++ D G
Sbjct: 111 VSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQETGNLYIAKVEKSDVGN 170
Query: 74 YQCHVSADDDSAQM---SAQVILG-----GEL---VEIASSNQVVVDVGHRIELHCRVSP 122
Y C V+ + ++ +IL GE +E+ V + G ++L C
Sbjct: 171 YTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALG 230
Query: 123 KRLSSAKAWLKDGLVL-----RRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELI 177
+ + DG + R S+ +L + Q+EDAG Y+C E+ + ++ G+L
Sbjct: 231 NPVPTILWRRADGKPIARKARRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLT 290
Query: 178 IHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKD 237
+ + + ++V +
Sbjct: 291 FY-----------------------------------------AQPNWVQIINDIHVAME 309
Query: 238 ESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSE 297
ESV C A G P PT +W K P+ DRIQ +L+I+ V SD+G++ CVA N
Sbjct: 310 ESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIEQGTLNITIVNLSDAGMYQCVAENKH 369
Query: 298 G 298
G
Sbjct: 370 G 370
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 71/322 (22%), Positives = 128/322 (39%), Gaps = 67/322 (20%)
Query: 60 VLVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGELVE---IASSNQVVVDVGHRIEL 116
+L+ + + +DAG YQC ++ + +S + L +E + + V V G + L
Sbjct: 63 LLINNPNKTQDAGTYQC-IATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVL 121
Query: 117 HCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGEL 176
C P + AW+ + Y + ++ ++ +G L
Sbjct: 122 LCGPPPHSGELSYAWIFN-----------------------EYPSYQDNRRFVSQETGNL 158
Query: 177 IIHQVDESDRYRSYQCRGVNKLTGASLLSV-------NRGRLSLTENKRLLSAAKMFEKH 229
I +V++SD +Y C N +T +L N G + E K + +
Sbjct: 159 YIAKVEKSD-VGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPET---- 213
Query: 230 RILNVKKDESVILPCSAQGNPLPTIKWYKQDS-PVEESDRIQRIGSSLSISHVEESDSGV 288
+ +K +V L C A GNP+PTI W + D P+ R + L I + ++ D+G
Sbjct: 214 --VPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNGILEIPNFQQEDAGS 271
Query: 289 WNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNV 348
+ CVA NS G++ ++ G+L + + + ++V
Sbjct: 272 YECVAENSRGKN---------------VAKGQLTFY----------AQPNWVQIINDIHV 306
Query: 349 KKDESVILPCSAQGNPLPTIKY 370
+ESV C A G P PT ++
Sbjct: 307 AMEESVFWECKANGRPKPTYRW 328
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 65/143 (45%), Gaps = 32/143 (22%)
Query: 54 RRNSDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGELVEIASSN--QVVVDVG 111
R S+ +L + Q+EDAG Y+C A++ + A+ G+L A N Q++ D+
Sbjct: 252 RHKSNGILEIPNFQQEDAGSYEC--VAENSRGKNVAK----GQLTFYAQPNWVQIINDIH 305
Query: 112 HRIE----LHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQRE------------D 155
+E C+ + R WLK+G D +L DR+Q E D
Sbjct: 306 VAMEESVFWECKAN-GRPKPTYRWLKNG-------DPLLTRDRIQIEQGTLNITIVNLSD 357
Query: 156 AGMYQCHIEDGKYHMLSSGELII 178
AGMYQC E+ + SS EL +
Sbjct: 358 AGMYQCVAENKHGVIFSSAELSV 380
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/226 (22%), Positives = 91/226 (40%), Gaps = 44/226 (19%)
Query: 155 DAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLT 214
D GM D +Y ++ G L+I+ +++ +YQC N G +
Sbjct: 49 DIGM------DFRYSVVD-GSLLINNPNKTQDAGTYQCIATNSF----------GTIVSR 91
Query: 215 ENKRLLSAAKMFEKHR--ILNVKKDESVILPCSAQGNPLP-----TIKWYKQDSPVEESD 267
E K + + F+ ++V++ + ++L C P P + W + P + +
Sbjct: 92 EAKLQFAYLENFKTRTRSTVSVRRGQGMVLLCG----PPPHSGELSYAWIFNEYPSYQDN 147
Query: 268 R--IQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQ 325
R + + +L I+ VE+SD G + CV N+ K+ + LI+
Sbjct: 148 RRFVSQETGNLYIAKVEKSDVGNYTCVVTNTVTNHKV------------LGPPTPLILRN 195
Query: 326 VDEKNKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKYR 371
+ F + + +K +V L C A GNP+PTI +R
Sbjct: 196 DGVMGEYEPKIEVQFPE--TVPAEKGTTVKLECFALGNPVPTILWR 239
Score = 35.4 bits (80), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Query: 236 KDESVILPCSAQGNPLPTIKW--YKQDSPVEESDRIQRIGSSLSISHVEES-DSGVWNCV 292
+++ V L C +GNP P I+W D + R + SL I++ ++ D+G + C+
Sbjct: 21 EEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDGSLLINNPNKTQDAGTYQCI 80
Query: 293 ANNSEG 298
A NS G
Sbjct: 81 ATNSFG 86
>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex
Length = 384
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 68/301 (22%), Positives = 113/301 (37%), Gaps = 64/301 (21%)
Query: 21 VVVDVGHRIELHCRVSPKRLSSAKAWL-------KDGLVLRRNSDEVLVLDRVQREDAGM 73
V V G + L C P + AW+ +D L + +V++ D G
Sbjct: 112 VSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQETGNLYIAKVEKSDVGN 171
Query: 74 YQCHVSADDDSAQM---SAQVILG-----GEL---VEIASSNQVVVDVGHRIELHCRVSP 122
Y C V+ + ++ +IL GE +E+ V + G ++L C
Sbjct: 172 YTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALG 231
Query: 123 KRLSSAKAWLKDGLVL-----RRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELI 177
+ + DG + R S+ +L + Q+EDAG Y+C E+ + ++ G+L
Sbjct: 232 NPVPTILWRRADGKPIARKARRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLT 291
Query: 178 IHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKD 237
+ + + ++V +
Sbjct: 292 FY-----------------------------------------AQPNWVQIINDIHVAME 310
Query: 238 ESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSE 297
ESV C A G P PT +W K P+ DRIQ +L+I+ V SD+G++ CVA N
Sbjct: 311 ESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIEQGTLNITIVNLSDAGMYQCVAENKH 370
Query: 298 G 298
G
Sbjct: 371 G 371
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 71/322 (22%), Positives = 128/322 (39%), Gaps = 67/322 (20%)
Query: 60 VLVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGELVE---IASSNQVVVDVGHRIEL 116
+L+ + + +DAG YQC ++ + +S + L +E + + V V G + L
Sbjct: 64 LLINNPNKTQDAGTYQC-IATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVL 122
Query: 117 HCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGEL 176
C P + AW+ + Y + ++ ++ +G L
Sbjct: 123 LCGPPPHSGELSYAWIFN-----------------------EYPSYQDNRRFVSQETGNL 159
Query: 177 IIHQVDESDRYRSYQCRGVNKLTGASLLSV-------NRGRLSLTENKRLLSAAKMFEKH 229
I +V++SD +Y C N +T +L N G + E K + +
Sbjct: 160 YIAKVEKSD-VGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPET---- 214
Query: 230 RILNVKKDESVILPCSAQGNPLPTIKWYKQDS-PVEESDRIQRIGSSLSISHVEESDSGV 288
+ +K +V L C A GNP+PTI W + D P+ R + L I + ++ D+G
Sbjct: 215 --VPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNGILEIPNFQQEDAGS 272
Query: 289 WNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNV 348
+ CVA NS G++ ++ G+L + + + ++V
Sbjct: 273 YECVAENSRGKN---------------VAKGQLTFY----------AQPNWVQIINDIHV 307
Query: 349 KKDESVILPCSAQGNPLPTIKY 370
+ESV C A G P PT ++
Sbjct: 308 AMEESVFWECKANGRPKPTYRW 329
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 65/143 (45%), Gaps = 32/143 (22%)
Query: 54 RRNSDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGELVEIASSN--QVVVDVG 111
R S+ +L + Q+EDAG Y+C A++ + A+ G+L A N Q++ D+
Sbjct: 253 RHKSNGILEIPNFQQEDAGSYEC--VAENSRGKNVAK----GQLTFYAQPNWVQIINDIH 306
Query: 112 HRIE----LHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQRE------------D 155
+E C+ + R WLK+G D +L DR+Q E D
Sbjct: 307 VAMEESVFWECKAN-GRPKPTYRWLKNG-------DPLLTRDRIQIEQGTLNITIVNLSD 358
Query: 156 AGMYQCHIEDGKYHMLSSGELII 178
AGMYQC E+ + SS EL +
Sbjct: 359 AGMYQCVAENKHGVIFSSAELSV 381
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/226 (22%), Positives = 91/226 (40%), Gaps = 44/226 (19%)
Query: 155 DAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLT 214
D GM D +Y ++ G L+I+ +++ +YQC N G +
Sbjct: 50 DIGM------DFRYSVVD-GSLLINNPNKTQDAGTYQCIATNSF----------GTIVSR 92
Query: 215 ENKRLLSAAKMFEKHR--ILNVKKDESVILPCSAQGNPLP-----TIKWYKQDSPVEESD 267
E K + + F+ ++V++ + ++L C P P + W + P + +
Sbjct: 93 EAKLQFAYLENFKTRTRSTVSVRRGQGMVLLCG----PPPHSGELSYAWIFNEYPSYQDN 148
Query: 268 R--IQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQ 325
R + + +L I+ VE+SD G + CV N+ K+ + LI+
Sbjct: 149 RRFVSQETGNLYIAKVEKSDVGNYTCVVTNTVTNHKV------------LGPPTPLILRN 196
Query: 326 VDEKNKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKYR 371
+ F + + +K +V L C A GNP+PTI +R
Sbjct: 197 DGVMGEYEPKIEVQFPE--TVPAEKGTTVKLECFALGNPVPTILWR 240
Score = 35.4 bits (80), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Query: 236 KDESVILPCSAQGNPLPTIKW--YKQDSPVEESDRIQRIGSSLSISHVEES-DSGVWNCV 292
+++ V L C +GNP P I+W D + R + SL I++ ++ D+G + C+
Sbjct: 22 EEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDGSLLINNPNKTQDAGTYQCI 81
Query: 293 ANNSEG 298
A NS G
Sbjct: 82 ATNSFG 87
>pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3
pdb|2WIM|B Chain B, Crystal Structure Of Ncam2 Ig1-3
Length = 291
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 64/248 (25%), Positives = 112/248 (45%), Gaps = 45/248 (18%)
Query: 69 EDAGMYQCHVSADDDSAQMSAQVILGGELVEIASSNQVV----VDVGHRIELHCRVSPKR 124
EDAG+Y+C + D A V+L E+ + + +VV G E+ CRVS
Sbjct: 70 EDAGIYRCQAT-DAKGQTQEATVVL--EIYQKLTFREVVSPQEFKQGEDAEVVCRVS-SS 125
Query: 125 LSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDES 184
+ A +WL +++EV I D ++ ML++ L I +++S
Sbjct: 126 PAPAVSWL-------YHNEEVTT---------------ISDNRFAMLANNNLQILNINKS 163
Query: 185 DRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLS---AAKMFEKHRILNVKKDESVI 241
D Y+C G + RG + + +++ A M +K ++ E +
Sbjct: 164 DE-GIYRCEGRVEA---------RGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMT 213
Query: 242 LPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSS--LSISHVEESDSGVWNCVANNSEGQ 299
C A G+P P I W++ +EE+++ GS+ L++ ++ SD G + C A N G+
Sbjct: 214 FSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGE 273
Query: 300 DKMQLFIQ 307
D+ Q F+Q
Sbjct: 274 DEKQAFLQ 281
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 6/69 (8%)
Query: 238 ESVILPCSAQGNPLPTIKWYK-QDSPVEESDRI----QRIGSSLSISHVEESDSGVWNCV 292
ES C+A G P +I WY Q + + R+ + + S L+I + D+G++ C
Sbjct: 20 ESKFFTCTAIGEP-ESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQ 78
Query: 293 ANNSEGQDK 301
A +++GQ +
Sbjct: 79 ATDAKGQTQ 87
>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
pdb|2IEP|B Chain B, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
Length = 192
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 74/144 (51%), Gaps = 16/144 (11%)
Query: 165 DGKYHMLSSGELI-IHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAA 223
D +Y + +G+L+ I V++SD Y C N + GA + G L + ++
Sbjct: 52 DTRYSIRENGQLLTILSVEDSDD-GIYCCTANNGVGGAV---ESCGALQVKMKPKITRPP 107
Query: 224 KMFEKHRILNVKKDESV--ILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGS-SLSISH 280
+NVK E + +LPC+ GNP P++ W K DS + E+ RI + S SL I +
Sbjct: 108 --------INVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLESGSLRIHN 159
Query: 281 VEESDSGVWNCVANNSEGQDKMQL 304
V++ D+G + CVA NS G +L
Sbjct: 160 VQKEDAGQYRCVAKNSLGTAYSKL 183
Score = 32.0 bits (71), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 63/137 (45%), Gaps = 26/137 (18%)
Query: 45 AWLKDGLVLR--------RNSDEVLVLDRVQREDAGMYQCHVSADDDSAQMSA---QVIL 93
+W ++ ++++ R + ++L + V+ D G+Y C + A S QV +
Sbjct: 40 SWTRNKILIKLFDTRYSIRENGQLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKM 99
Query: 94 GGELVEIASSNQVVVDVGHRIELHCRV--SPKRLSSAKAWLKDGLVLRRNSDEVLVLD-- 149
++ + +++ G + L C +PK + +W+K LR NS + VL+
Sbjct: 100 KPKITRPPINVKIIE--GLKAVLPCTTMGNPK---PSVSWIKGDSALRENS-RIAVLESG 153
Query: 150 -----RVQREDAGMYQC 161
VQ+EDAG Y+C
Sbjct: 154 SLRIHNVQKEDAGQYRC 170
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 14/81 (17%)
Query: 5 IQVKSSLSIEMSPSGQVVVDVGHRIELHCRV--SPKRLSSAKAWLKDGLVLRRNSDEVLV 62
+QVK I P +++ G + L C +PK + +W+K LR NS + V
Sbjct: 95 LQVKMKPKITRPPINVKIIE-GLKAVLPCTTMGNPK---PSVSWIKGDSALRENS-RIAV 149
Query: 63 LD-------RVQREDAGMYQC 76
L+ VQ+EDAG Y+C
Sbjct: 150 LESGSLRIHNVQKEDAGQYRC 170
>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor
Length = 403
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 73/362 (20%), Positives = 135/362 (37%), Gaps = 68/362 (18%)
Query: 26 GHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDE---------VLVLD----RVQREDAG 72
G + L+C R W KDGL+L D+ +L+ + R + D G
Sbjct: 36 GGNVLLNCSAESDRGVPVIKWKKDGLILALGMDDRKQQLPNGSLLIQNILHSRHHKPDEG 95
Query: 73 MYQCHVSADDDSAQMS--AQVILGGELVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKA 130
+YQC S D + +S A+V++ G L ++ + + +G + L C V + +
Sbjct: 96 LYQCEASLGDSGSIISRTAKVMVAGPLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIH- 154
Query: 131 WLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSY 190
W K+ ++D D + +L SG L I ++ D Y
Sbjct: 155 WQKN------------------QQDLNPIP---GDSRVVVLPSGALQISRLQPGDS-GVY 192
Query: 191 QCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNP 250
+C N AS + N + + + L ++ + + + +L C G P
Sbjct: 193 RCSARNP---ASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYP 249
Query: 251 LPTIKWYKQDSPVEESDRIQRI--GSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQY 308
P+ W + + ++ + + GS+L IS+V + DSG + CV
Sbjct: 250 PPSFTWLRGEEVIQLRSKKYSLLGGSNLLISNVTDDDSGTYTCVV--------------- 294
Query: 309 AHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTI 368
+ ++ +S EL + L L + + C+ G P+PT+
Sbjct: 295 TYKNENISASAELTV----------LVPPWFLNHPSNLYAYESMDIEFECAVSGKPVPTV 344
Query: 369 KY 370
+
Sbjct: 345 NW 346
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 59/256 (23%), Positives = 98/256 (38%), Gaps = 45/256 (17%)
Query: 61 LVLDRVQREDAGMYQCHV-------SADDDSAQMSAQVILGGELVEIASSNQVVVDVGHR 113
L + R+Q D+G+Y+C + ++ ++ + L +L + + V+ G
Sbjct: 179 LQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKD 238
Query: 114 IELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSS 173
L C VS S WL+ +EV+ + KY +L
Sbjct: 239 AVLECCVSGYPPPSF-TWLR--------GEEVI---------------QLRSKKYSLLGG 274
Query: 174 GELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILN 233
L+I V + D +Y C +++ +S + +L L
Sbjct: 275 SNLLISNVTDDDS-GTYTC----------VVTYKNENISASAELTVLVPPWFLNHPSNLY 323
Query: 234 VKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI-GSSLSISHVEESDSGVWNCV 292
+ + C+ G P+PT+ W K V SD Q + GS+L I V +SD G + CV
Sbjct: 324 AYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIVGGSNLRILGVVKSDEGFYQCV 383
Query: 293 ANNSEG--QDKMQLFI 306
A N G Q QL +
Sbjct: 384 AENEAGNAQSSAQLIV 399
>pdb|3S97|C Chain C, Ptprz Cntn1 Complex
pdb|3S97|D Chain D, Ptprz Cntn1 Complex
Length = 201
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 67/138 (48%), Gaps = 3/138 (2%)
Query: 172 SSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRI 231
++G L I V+ SD+ +Y C + S+ S + + E A + + +
Sbjct: 64 TNGNLYIANVEASDK-GNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKD 122
Query: 232 LNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNC 291
+ ++V L C A GNP+P I+W K P+ + I G+ L I +++ D G++ C
Sbjct: 123 VYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEISTSGAVLKIFNIQLEDEGIYEC 182
Query: 292 VANNSEGQDKMQ--LFIQ 307
A N G+DK Q +++Q
Sbjct: 183 EAENIRGKDKHQARIYVQ 200
>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4
Length = 192
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 69/159 (43%), Gaps = 38/159 (23%)
Query: 220 LSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSS--LS 277
+ A M +K ++ E + C A G+P P I W++ +EE+++ GS+ L+
Sbjct: 2 MPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELT 61
Query: 278 ISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAA 337
+ ++ SD G + C A N G+D+ Q F+Q
Sbjct: 62 VRNIINSDGGPYVCRATNKAGEDEKQAFLQ------------------------------ 91
Query: 338 KMFEKHRILNVKKDES-----VILPCSAQGNPLPTIKYR 371
+F + I+ +K + + V L C A+G P+P I ++
Sbjct: 92 -VFVQPHIIQLKNETTYENGQVTLVCDAEGEPIPEITWK 129
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 51/220 (23%), Positives = 82/220 (37%), Gaps = 57/220 (25%)
Query: 103 SNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCH 162
S + G + CR S A +W ++G ++ N +L
Sbjct: 11 SFNATAERGEEMTFSCRAS-GSPEPAISWFRNGKLIEENEKYIL---------------- 53
Query: 163 IEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSA 222
S+ EL + + SD Y CR NK E + L
Sbjct: 54 -------KGSNTELTVRNIINSDG-GPYVCRATNKA-------------GEDEKQAFL-- 90
Query: 223 AKMFEKHRILNVKKDES-----VILPCSAQGNPLPTIKWYK--QDSPVEESD-----RIQ 270
++F + I+ +K + + V L C A+G P+P I W + E D RI+
Sbjct: 91 -QVFVQPHIIQLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIE 149
Query: 271 RIG----SSLSISHVEESDSGVWNCVANNSEGQDKMQLFI 306
G SSL I V+ SDSG ++C A + G + +++
Sbjct: 150 VKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYL 189
>pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar
Length = 201
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 59/115 (51%), Gaps = 11/115 (9%)
Query: 190 YQCRGVNKLTGASLLSVNR-GRLSLTENKRLLSAAKMFEKHRILNV-KKDESVILPCSAQ 247
Y+C N SL +N +LS+ E +L S + L V +K + + C+A
Sbjct: 80 YECTATN-----SLGEINTSAKLSVLEEDQLPSGFPTIDMGPQLKVVEKGRTATMLCAAG 134
Query: 248 GNPLPTIKWYKQDSPVEES---DRIQRIGS-SLSISHVEESDSGVWNCVANNSEG 298
GNP P I W+K PV+ + RI+++ S +L I EESD G + CVA NS G
Sbjct: 135 GNPDPEISWFKDFLPVDPAASNGRIKQLRSGALQIESSEESDQGKYECVATNSAG 189
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 56/135 (41%), Gaps = 28/135 (20%)
Query: 244 CSAQGNPLPTIKWYKQDSPVEESDRIQRI------GSSLSISHVE-ESDSGVWNCVANNS 296
C A G P P I W K+ V S R + I GS L I + + D ++ C A NS
Sbjct: 29 CQATGEPKPRITWMKKGKKV-SSQRFEVIEFDDGAGSVLRIQPLRVQRDEAIYECTATNS 87
Query: 297 EGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILN-VKKDESVI 355
G+ + +S +L + + D+ L S + L V+K +
Sbjct: 88 LGE---------------INTSAKLSVLEEDQ----LPSGFPTIDMGPQLKVVEKGRTAT 128
Query: 356 LPCSAQGNPLPTIKY 370
+ C+A GNP P I +
Sbjct: 129 MLCAAGGNPDPEISW 143
>pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar
pdb|2YD8|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar In Complex
With Sucrose Octasulphate
Length = 214
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 55/115 (47%), Gaps = 11/115 (9%)
Query: 190 YQCRGVNKLTGASLLSVNR-GRLSLTENKRLLSAAKMFEKHRILNV-KKDESVILPCSAQ 247
Y+C N SL +N +LS+ E ++L + L V +K + + C+A
Sbjct: 79 YECTATN-----SLGEINTSAKLSVLEEEQLPPGFPSIDMGPQLKVVEKARTATMLCAAG 133
Query: 248 GNPLPTIKWYKQDSPVEESDRIQRI----GSSLSISHVEESDSGVWNCVANNSEG 298
GNP P I W+K PV+ + RI +L I EESD G + CVA NS G
Sbjct: 134 GNPDPEISWFKDFLPVDPATSNGRIKQLRSGALQIESSEESDQGKYECVATNSAG 188
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 58/134 (43%), Gaps = 26/134 (19%)
Query: 244 CSAQGNPLPTIKWYKQDSPVEESDRIQRI------GSSLSISHVE-ESDSGVWNCVANNS 296
C A G P P I W K+ V S R + I GS L I + + D ++ C A NS
Sbjct: 28 CQATGEPKPRITWMKKGKKV-SSQRFEVIEFDDGAGSVLRIQPLRVQRDEAIYECTATNS 86
Query: 297 EGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKDESVIL 356
G+ + +S +L + + +E+ + M + ++ V+K + +
Sbjct: 87 LGE---------------INTSAKLSVLE-EEQLPPGFPSIDMGPQLKV--VEKARTATM 128
Query: 357 PCSAQGNPLPTIKY 370
C+A GNP P I +
Sbjct: 129 LCAAGGNPDPEISW 142
>pdb|1QZ1|A Chain A, Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam
Length = 291
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 68/317 (21%), Positives = 127/317 (40%), Gaps = 68/317 (21%)
Query: 11 LSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDG------------LVLRRNSD 58
L +++ PS Q + VG C+V+ +W +V +
Sbjct: 3 LQVDIVPS-QGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDS 61
Query: 59 EVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGELVEIASSNQVVVDVGHRIELHC 118
L + +DAG+Y+C V+A+D + S V V + ++
Sbjct: 62 STLTIYNANIDDAGIYKCVVTAEDGTQ----------------SEATVNVKIFQKLMFKN 105
Query: 119 RVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHI-------EDGKYHML 171
+P+ + D V+V D V + H +D ++ +L
Sbjct: 106 APTPQEF-------------KEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVL 152
Query: 172 SSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFE-KHR 230
S+ L I + ++D +Y+C G +L+ RG ++ + + +++ + +
Sbjct: 153 SNNYLQIRGIKKTDE-GTYRCEG-------RILA--RGEINFKDIQVIVNVPPTVQARQS 202
Query: 231 ILNVKKD--ESVILPCSAQGNPLPTIKWYKQDSPV--EESDRIQRI----GSSLSISHVE 282
I+N + +SV L C A G P PT+ W K P+ EE D + I S L+I +V+
Sbjct: 203 IVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVD 262
Query: 283 ESDSGVWNCVANNSEGQ 299
++D + C+A N G+
Sbjct: 263 KNDEAEYVCIAENKAGE 279
>pdb|3V6B|R Chain R, Vegfr-2VEGF-E Complex Structure
Length = 424
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 63/280 (22%), Positives = 105/280 (37%), Gaps = 61/280 (21%)
Query: 44 KAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHVSADDDSAQ--MSAQVILGGELVEI- 100
K ++ DG + +S + + AGM C +D+S Q M V++G + ++
Sbjct: 38 KRFVPDGNRISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVV 97
Query: 101 -ASSNQVVVDVGHRIELHCRV-------------SPKRLSSAKAWLKDGLVLRRNSD--- 143
+ S+ + + VG ++ L+C P K + L + S+
Sbjct: 98 LSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKK 157
Query: 144 --EVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGA 201
L +D V R D G+Y C G +S + +H+
Sbjct: 158 FLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHE--------------------K 197
Query: 202 SLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDS 261
++ G SL E A + E+ RI P G P P IKWYK
Sbjct: 198 PFVAFGSGMESLVE-------ATVGERVRI-----------PAKYLGYPPPEIKWYKNGI 239
Query: 262 PVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDK 301
P+E + I + G L+I V E D+G + + N ++K
Sbjct: 240 PLESNHTI-KAGHVLTIMEVSERDTGNYTVILTNPISKEK 278
Score = 36.2 bits (82), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 66/173 (38%), Gaps = 32/173 (18%)
Query: 15 MSPSGQVVVDVGHRIELHCRV-------------SPKRLSSAKAWLKDGLVLRRNSD--- 58
+SPS + + VG ++ L+C P K + L + S+
Sbjct: 98 LSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKK 157
Query: 59 --EVLVLDRVQREDAGMYQCHVSADDDSAQMSAQV-ILGGELVEIASSNQVVVD--VGHR 113
L +D V R D G+Y C S+ + + S V + V S + +V+ VG R
Sbjct: 158 FLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVEATVGER 217
Query: 114 IELHCRVSPKRLSSAKA---WLKDGLVLRRN----SDEVLVLDRVQREDAGMY 159
+ R+ K L W K+G+ L N + VL + V D G Y
Sbjct: 218 V----RIPAKYLGYPPPEIKWYKNGIPLESNHTIKAGHVLTIMEVSERDTGNY 266
Score = 28.1 bits (61), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 14/61 (22%), Positives = 28/61 (45%)
Query: 259 QDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSS 318
+D + +++ S+L+I V SD G++ C A++ K F++ + S
Sbjct: 145 RDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGS 204
Query: 319 G 319
G
Sbjct: 205 G 205
>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1
Length = 381
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/253 (21%), Positives = 91/253 (35%), Gaps = 57/253 (22%)
Query: 61 LVLDRVQREDAGMYQCHVSADDDSAQMS-----AQVILGGELVEIASSN-------QVVV 108
L + R D G Y C ++ D + S AQ+ L E + + + +
Sbjct: 159 LYIARTNASDLGNYSCLATSHMDFSTKSVFSKFAQLNLAAEDTRLFAPSIKARFPAETYA 218
Query: 109 DVGHRIELHCRVSPKRLSSAKAWLK-DGLVLRR--NSDEVLVLDRVQREDAGMYQCHIED 165
VG ++ L C + K W K DG + + ++ L + V ED G Y+C E+
Sbjct: 219 LVGQQVTLECFAFGNPVPRIK-WRKVDGSLSPQWTTAEPTLQIPSVSFEDEGTYECEAEN 277
Query: 166 GKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKM 225
K G +I+ E L ++ + N R
Sbjct: 278 SKGRDTVQGRIIVQAQPEW------------------LKVISDTEADIGSNLRWG----- 314
Query: 226 FEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESD 285
C+A G P PT++W + P+ +R++ + L S + D
Sbjct: 315 ------------------CAAAGKPRPTVRWLRNGEPLASQNRVEVLAGDLRFSKLSLED 356
Query: 286 SGVWNCVANNSEG 298
SG++ CVA N G
Sbjct: 357 SGMYQCVAENKHG 369
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 59/255 (23%), Positives = 94/255 (36%), Gaps = 42/255 (16%)
Query: 60 VLVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGELVEIASSNQVVVDV--GHRIELH 117
+++++ + +DAG+YQC S + ++ G L E + + V G + L
Sbjct: 62 LVIMNPTKAQDAGVYQCLASNPVGTVVSREAILRFGFLQEFSKEERDPVKAHEGWGVMLP 121
Query: 118 CRVSPKRLSSAKAWL---------KDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKY 168
C + WL DG + L + R D G Y C
Sbjct: 122 CNPPAHYPGLSYRWLLNEFPNFIPTDGRHFVSQTTGNLYIARTNASDLGNYSCLATS--- 178
Query: 169 HMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEK 228
HM S + + + + + L+ RL K A E
Sbjct: 179 HMDFSTKSVFSKFAQLN------------------LAAEDTRLFAPSIKARFPA----ET 216
Query: 229 HRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGV 288
+ ++ + V L C A GNP+P IKW K D + S + +L I V D G
Sbjct: 217 YALVG----QQVTLECFAFGNPVPRIKWRKVDGSL--SPQWTTAEPTLQIPSVSFEDEGT 270
Query: 289 WNCVANNSEGQDKMQ 303
+ C A NS+G+D +Q
Sbjct: 271 YECEAENSKGRDTVQ 285
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 72/163 (44%), Gaps = 10/163 (6%)
Query: 25 VGHRIELHCRVSPKRLSSAKAWLK-DGLVLRR--NSDEVLVLDRVQREDAGMYQCHVSAD 81
VG ++ L C + K W K DG + + ++ L + V ED G Y+C
Sbjct: 220 VGQQVTLECFAFGNPVPRIK-WRKVDGSLSPQWTTAEPTLQIPSVSFEDEGTYECEAENS 278
Query: 82 DDSAQMSAQVILGGELVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVL-RR 140
+ ++I+ + + + D+G + C + K + + WL++G L +
Sbjct: 279 KGRDTVQGRIIVQAQPEWLKVISDTEADIGSNLRWGCAAAGKPRPTVR-WLRNGEPLASQ 337
Query: 141 NSDEVLVLD----RVQREDAGMYQCHIEDGKYHMLSSGELIIH 179
N EVL D ++ ED+GMYQC E+ + +S EL +
Sbjct: 338 NRVEVLAGDLRFSKLSLEDSGMYQCVAENKHGTIYASAELAVQ 380
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/243 (20%), Positives = 89/243 (36%), Gaps = 37/243 (15%)
Query: 143 DEVLVLDRVQREDAGMY-------QCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGV 195
++VL+ R + Y + +E G H L G L+I ++ YQC
Sbjct: 22 EQVLLACRARASPPATYRWKMNGTEMKLEPGSRHQLVGGNLVIMNPTKAQDAGVYQCLAS 81
Query: 196 NKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDE--SVILPCSAQGN-PLP 252
N + G + E + F K VK E V+LPC+ + P
Sbjct: 82 NPV----------GTVVSREAILRFGFLQEFSKEERDPVKAHEGWGVMLPCNPPAHYPGL 131
Query: 253 TIKW----YKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQY 308
+ +W + P + + + +L I+ SD G ++C+A + +F ++
Sbjct: 132 SYRWLLNEFPNFIPTDGRHFVSQTTGNLYIARTNASDLGNYSCLATSHMDFSTKSVFSKF 191
Query: 309 AHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTI 368
A + ++ RL + + + V L C A GNP+P I
Sbjct: 192 AQ-------------LNLAAEDTRLFAPSIKARFPAETYALVGQQVTLECFAFGNPVPRI 238
Query: 369 KYR 371
K+R
Sbjct: 239 KWR 241
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 237 DESVILPCSAQGNPLPTIKWYKQDS--PVEESDRIQRIGSSLSI-SHVEESDSGVWNCVA 293
+E V+L C A+ +P T +W + +E R Q +G +L I + + D+GV+ C+A
Sbjct: 21 EEQVLLACRARASPPATYRWKMNGTEMKLEPGSRHQLVGGNLVIMNPTKAQDAGVYQCLA 80
Query: 294 NNSEG 298
+N G
Sbjct: 81 SNPVG 85
>pdb|2V5T|A Chain A, Crystal Structure Of Ncam2 Ig2-3
Length = 189
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
Query: 222 AAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSS--LSIS 279
A M +K ++ E + C A G+P P I W++ +EE+++ GS+ L++
Sbjct: 98 AISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVR 157
Query: 280 HVEESDSGVWNCVANNSEGQDKMQLFIQ 307
++ SD G + C A N G+D+ Q F+Q
Sbjct: 158 NIINSDGGPYVCRATNKAGEDEKQAFLQ 185
>pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 304
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 69/145 (47%), Gaps = 33/145 (22%)
Query: 234 VKKDESVILPCSAQGNPLPTIKWYKQDSPVEES---DRIQRIGS-SLSISHVEESDSGVW 289
V++ + + C+A GNP P I W+K PV+ S RI+++ S +L I EE+D G +
Sbjct: 120 VERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKY 179
Query: 290 NCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFE----KHRI 345
CVA NS G ++Y+ S L + R+ + A F H I
Sbjct: 180 ECVATNSAG-------VRYS-------SPANLYV--------RVQNVAPRFSILPMSHEI 217
Query: 346 LNVKKDESVILPCSAQGNPLPTIKY 370
+ +V + C A G+P+P +K+
Sbjct: 218 M---PGGNVNITCVAVGSPMPYVKW 239
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 55/134 (41%), Gaps = 26/134 (19%)
Query: 244 CSAQGNPLPTIKWYKQDSPVEESDRIQRI------GSSLSISHVEES-DSGVWNCVANNS 296
C A G+P P + W K+ V S R + I G+ L I + D V+ CVA NS
Sbjct: 28 CQATGDPKPRVTWNKKGKKV-NSQRFETIEFDESAGAVLRIQPLRTPRDENVYECVAQNS 86
Query: 297 EGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKDESVIL 356
G+ + H K +L +L N + K+ E+ R + +
Sbjct: 87 VGEITV-------HAKLTVLREDQL---PSGFPNIDMGPQLKVVERTR--------TATM 128
Query: 357 PCSAQGNPLPTIKY 370
C+A GNP P I +
Sbjct: 129 LCAASGNPDPEITW 142
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 63/138 (45%), Gaps = 17/138 (12%)
Query: 165 DGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAK 224
+G+ L SG L I +E+D+ + Y+C N A + + L + R+ + A
Sbjct: 155 NGRIKQLRSGALQIESSEETDQGK-YECVATNS---AGVRYSSPANLYV----RVQNVAP 206
Query: 225 MFE----KHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISH 280
F H I+ +V + C A G+P+P +KW + + D + + L ++
Sbjct: 207 RFSILPMSHEIM---PGGNVNITCVAVGSPMPYVKWMQGAEDLTPEDDMPVGRNVLELTD 263
Query: 281 VEESDSGVWNCVANNSEG 298
V+ DS + CVA +S G
Sbjct: 264 VK--DSANYTCVAMSSLG 279
>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin
Length = 570
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 78/319 (24%), Positives = 133/319 (41%), Gaps = 65/319 (20%)
Query: 15 MSPSGQVVVDVGHRIELHCRV--SPK-RLSSAKAWLKDGLVLR---------RNSDEVLV 62
+ P V +G I L C+V +P+ R+ AW K+ LR +N+ LV
Sbjct: 9 IEPLEHVEAAIGEPITLQCKVDGTPEIRI----AWYKEHTKLRSAPAYKMQFKNNVASLV 64
Query: 63 LDRVQREDAGMYQCHVSADDDSAQMSAQVILGGELVEIASSNQVVVDV----GHRIELHC 118
+++V D G Y C + + A S+ V++ E S + + DV G + C
Sbjct: 65 INKVDHSDVGEYTCK-AENSVGAVASSAVLVIKERKLPPSFARKLKDVHETLGFPVAFEC 123
Query: 119 RVS---PKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGE 175
R++ P ++S W KDG +L ++DA + I H +++
Sbjct: 124 RINGSEPLQVS----WYKDGELL--------------KDDANLQTSFI-----HNVAT-- 158
Query: 176 LIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFE-KHRILNV 234
L I Q D+S Y C N L AS + +L+L+E++ F+ K +++
Sbjct: 159 LQILQTDQS-HVGQYNCSASNPLGTAS----SSAKLTLSEHE----VPPFFDLKPVSVDL 209
Query: 235 KKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI----GSSLSISHVEESDSGVWN 290
ES C G I W K + + + ++L++ V + D+G +
Sbjct: 210 ALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYT 269
Query: 291 CVANNSEGQD--KMQLFIQ 307
C A+N G+D QL +Q
Sbjct: 270 CYASNVAGKDSCSAQLGVQ 288
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 70/303 (23%), Positives = 119/303 (39%), Gaps = 81/303 (26%)
Query: 25 VGHRIELHCRVS---PKRLSSAKAWLKDGLVLRRNSD-------EVLVLDRVQREDA--G 72
+G + CR++ P ++S W KDG +L+ +++ V L +Q + + G
Sbjct: 115 LGFPVAFECRINGSEPLQVS----WYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVG 170
Query: 73 MYQCHVSADDDSAQMSAQVILGG-ELVEIASSNQVVVDV--GHRIELHCRVS---PKRLS 126
Y C S +A SA++ L E+ V VD+ G C V+ P +++
Sbjct: 171 QYNCSASNPLGTASSSAKLTLSEHEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKIT 230
Query: 127 SAKAWLKDG----------LVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGEL 176
W KD + L N+ + VL +V + DAG Y C+
Sbjct: 231 ----WAKDNREIRPGGNYKMTLVENTATLTVL-KVTKGDAGQYTCY-------------- 271
Query: 177 IIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKK 236
+ + G S +L + E R + K E RI VK+
Sbjct: 272 ------------------ASNVAGKDSCS---AQLGVQEPPRFI---KKLEPSRI--VKQ 305
Query: 237 DESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQ----RIGSSLSISHVEESDSGVWNCV 292
DE C G+P + WYK ++ ++ES + + + L + ++ DSG + C
Sbjct: 306 DEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCE 365
Query: 293 ANN 295
A+N
Sbjct: 366 AHN 368
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 41/110 (37%), Gaps = 11/110 (10%)
Query: 66 VQREDAGMYQCHVSADDDSAQMSAQVILGGELVEIASSNQVVVDVGHRIELHCRVSPKRL 125
V D G YQC S D S + L + + + VG ++L +
Sbjct: 447 VDSADIGEYQCKASNDVGSDTCVGSITLKAPPRFVKKLSDISTVVGEEVQLQATIEGAEP 506
Query: 126 SSAKAWLKDGLVLRRNSDEVLV----------LDRVQREDAGMYQCHIED 165
S AW KD + R SD + + R + +AG Y C I++
Sbjct: 507 ISV-AWFKDKGEIVRESDNIWISYSENIATLQFSRAEPANAGKYTCQIKN 555
>pdb|3V2A|R Chain R, Vegfr-2VEGF-A Complex Structure
Length = 772
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 63/280 (22%), Positives = 105/280 (37%), Gaps = 61/280 (21%)
Query: 44 KAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHVSADDDSAQ--MSAQVILGGELVEI- 100
K ++ DG + +S + + AGM C +D+S Q M V++G + ++
Sbjct: 168 KRFVPDGNRISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVV 227
Query: 101 -ASSNQVVVDVGHRIELHCRV-------------SPKRLSSAKAWLKDGLVLRRNSD--- 143
+ S+ + + VG ++ L+C P K + L + S+
Sbjct: 228 LSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKK 287
Query: 144 --EVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGA 201
L +D V R D G+Y C G +S + +H+
Sbjct: 288 FLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHE--------------------K 327
Query: 202 SLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDS 261
++ G SL E A + E+ RI P G P P IKWYK
Sbjct: 328 PFVAFGSGMESLVE-------ATVGERVRI-----------PAKYLGYPPPEIKWYKNGI 369
Query: 262 PVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDK 301
P+E + I + G L+I V E D+G + + N ++K
Sbjct: 370 PLESNHTI-KAGHVLTIMEVSERDTGNYTVILTNPISKEK 408
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 238 ESVILPCSAQGNPLPTIKWYK-QDSPVEESDRIQRIGS-SLSISHVEESDSGVWNCVANN 295
ES+ + C+A GNP P I W+K ++ VE+S + + G+ +L+I V + D G++ C A +
Sbjct: 682 ESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQACS 741
Query: 296 SEGQDKMQLFI 306
G K++ F
Sbjct: 742 VLGCAKVEAFF 752
Score = 36.6 bits (83), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 16/82 (19%)
Query: 25 VGHRIELHCRVS---PKRLSSAKAWLKD--------GLVLRRNSDEVLVLDRVQREDAGM 73
+G IE+ C S P ++ W KD G+VL+ + + L + RV++ED G+
Sbjct: 680 IGESIEVSCTASGNPPPQI----MWFKDNETLVEDSGIVLK-DGNRNLTIRRVRKEDEGL 734
Query: 74 YQCHVSADDDSAQMSAQVILGG 95
Y C + A++ A I+ G
Sbjct: 735 YTCQACSVLGCAKVEAFFIIEG 756
Score = 34.7 bits (78), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 67/175 (38%), Gaps = 32/175 (18%)
Query: 13 IEMSPSGQVVVDVGHRIELHCRV-------------SPKRLSSAKAWLKDGLVLRRNSD- 58
+ +SPS + + VG ++ L+C P K + L + S+
Sbjct: 226 VVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEM 285
Query: 59 ----EVLVLDRVQREDAGMYQCHVSADDDSAQMSAQV-ILGGELVEIASSNQVVVD--VG 111
L +D V R D G+Y C S+ + + S V + V S + +V+ VG
Sbjct: 286 KKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVEATVG 345
Query: 112 HRIELHCRVSPKRLSSAKA---WLKDGLVLRRN----SDEVLVLDRVQREDAGMY 159
R+ R+ K L W K+G+ L N + VL + V D G Y
Sbjct: 346 ERV----RIPAKYLGYPPPEIKWYKNGIPLESNHTIKAGHVLTIMEVSERDTGNY 396
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 61/136 (44%), Gaps = 26/136 (19%)
Query: 46 WLKDGLVLRRNSDEVLVLD--RVQREDAGMYQCHVSADDDSAQMSAQVILGGELVEIASS 103
W + + +++++L+++ +D G Y C ++ D + + V L +A +
Sbjct: 610 WKLNATMFSNSTNDILIMELKNASLQDQGDYVC-LAQDRKTKKRHCVVRQLTVLERVAPT 668
Query: 104 ------NQVVVDVGHRIELHCRVS---PKRLSSAKAWLKD--------GLVLRRNSDEVL 146
NQ +G IE+ C S P ++ W KD G+VL+ + + L
Sbjct: 669 ITGNLENQTT-SIGESIEVSCTASGNPPPQI----MWFKDNETLVEDSGIVLK-DGNRNL 722
Query: 147 VLDRVQREDAGMYQCH 162
+ RV++ED G+Y C
Sbjct: 723 TIRRVRKEDEGLYTCQ 738
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 15/65 (23%), Positives = 29/65 (44%)
Query: 255 KWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKYH 314
K +D + +++ S+L+I V SD G++ C A++ K F++ +
Sbjct: 271 KLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFV 330
Query: 315 MLSSG 319
SG
Sbjct: 331 AFGSG 335
>pdb|1NCT|A Chain A, Titin Module M5, N-Terminally Extended, Nmr
pdb|1NCU|A Chain A, Titin Module M5, N-Terminally Extended, Nmr
Length = 106
Score = 53.5 bits (127), Expect = 2e-07, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 4/87 (4%)
Query: 222 AAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQ----RIGSSLS 277
AA++ K R + V + ES C G P+PT+ W ++ + S R Q + S+
Sbjct: 14 AARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFE 73
Query: 278 ISHVEESDSGVWNCVANNSEGQDKMQL 304
IS V+ SD G ++ V NSEG+ + +
Sbjct: 74 ISSVQASDEGNYSVVVENSEGKQEAEF 100
Score = 29.6 bits (65), Expect = 3.0, Method: Composition-based stats.
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 336 AAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKY 370
AA++ K R + V + ES C G P+PT+ +
Sbjct: 14 AARILTKPRSMTVYEGESARFSCDTDGEPVPTVTW 48
>pdb|2YD6|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|B Chain B, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
Length = 212
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 42/72 (58%), Gaps = 7/72 (9%)
Query: 234 VKKDESVILPCSAQGNPLPTIKWYKQDSPVEESD---RIQRIGS----SLSISHVEESDS 286
V++ + + C+A GNP P I W+K PV+ S+ RI+++ S +L I EESD
Sbjct: 120 VERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQ 179
Query: 287 GVWNCVANNSEG 298
G + CVA NS G
Sbjct: 180 GKYECVATNSAG 191
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 57/134 (42%), Gaps = 26/134 (19%)
Query: 244 CSAQGNPLPTIKWYKQDSPVEESDRIQRI------GSSLSISHVEES-DSGVWNCVANNS 296
C A G+P P I W K+ V + R + I GS L I + D ++ CVA+N+
Sbjct: 28 CQATGDPRPKIVWNKKGKKV-SNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVASNN 86
Query: 297 EGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKDESVIL 356
G+ + S L + + D+ R M + ++ V++ + +
Sbjct: 87 VGE---------------ISVSTRLTVLREDQI-PRGFPTIDMGPQLKV--VERTRTATM 128
Query: 357 PCSAQGNPLPTIKY 370
C+A GNP P I +
Sbjct: 129 LCAASGNPDPEITW 142
>pdb|3P3Y|A Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion
Complex In Space Group P6522
pdb|3P40|A Chain A, Crystal Structure Of Neurofascin Adhesion Complex In Space
Group P3221
Length = 404
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 76/336 (22%), Positives = 128/336 (38%), Gaps = 64/336 (19%)
Query: 48 KDGLVLRRNSDEVLVLDRV----QREDAGMYQCHVSADDDSAQMSAQVIL---GGELVEI 100
KD V R LV+D E G YQC +A +S ++ L L
Sbjct: 62 KDPRVSMRRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTA-LSNRIRLQVSKSPLWPK 120
Query: 101 ASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQ 160
+ + VVV G + L C P S W+ + E + +D + Q
Sbjct: 121 ENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSM-------EPIT------QDKRVSQ 167
Query: 161 CHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLL 220
H +G+L V D Y C T ++ N L + + +
Sbjct: 168 GH----------NGDLYFSNVMLQDMQTDYSCNARFHFT-HTIQQKNPFTLKVLTTRGVA 216
Query: 221 --SAAKMFEKHRILN--VKKDESVILPCSAQGNPLPTIKWYKQ--DSPVEESDRIQRIGS 274
+ + M+ + + V + ++L C A G P P I WYK+ D P +++ + +
Sbjct: 217 ERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKA-KFENFNK 275
Query: 275 SLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLL 334
+L I++V E DSG + C+A+N G + + ++ Y + DE +L
Sbjct: 276 ALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKAAPYWL-----------DEPKNLIL 324
Query: 335 SAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKY 370
+ E R++ C A GNP PT+++
Sbjct: 325 APG---EDGRLV-----------CRANGNPKPTVQW 346
Score = 35.4 bits (80), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 53/134 (39%), Gaps = 14/134 (10%)
Query: 176 LIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVK 235
L I V E D Y C NK+ G + T + R+ +A ++ + L +
Sbjct: 277 LRITNVSEEDS-GEYFCLASNKM----------GSIRHTISVRVKAAPYWLDEPKNLILA 325
Query: 236 KDESVILPCSAQGNPLPTIKWYKQDSPVEES---DRIQRIGSSLSISHVEESDSGVWNCV 292
E L C A GNP PT++W P++ + + G ++ + S V+ C
Sbjct: 326 PGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAGDTIIFRDTQISSRAVYQCN 385
Query: 293 ANNSEGQDKMQLFI 306
+N G F+
Sbjct: 386 TSNEHGYLLANAFV 399
Score = 31.6 bits (70), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 29/144 (20%), Positives = 56/144 (38%), Gaps = 15/144 (10%)
Query: 45 AWLKDGLVLR------RNSDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGELV 98
AW K G L N ++ L + V ED+G Y C S S + + V +
Sbjct: 255 AWYKKGGDLPSDKAKFENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKAAPY 314
Query: 99 EIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVL--------RRNSDEVLVLDR 150
+ +++ G L CR + + + W+ +G L R + + ++
Sbjct: 315 WLDEPKNLILAPGEDGRLVCRANGNPKPTVQ-WMVNGEPLQSAPPNPNREVAGDTIIFRD 373
Query: 151 VQREDAGMYQCHIEDGKYHMLSSG 174
Q +YQC+ + ++L++
Sbjct: 374 TQISSRAVYQCNTSNEHGYLLANA 397
>pdb|2YD2|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 214
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Query: 234 VKKDESVILPCSAQGNPLPTIKWYKQDSPVEES---DRIQRIGS-SLSISHVEESDSGVW 289
V++ + + C+A GNP P I W+K PV+ S RI+++ S +L I EE+D G +
Sbjct: 120 VERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKY 179
Query: 290 NCVANNSEG 298
CVA NS G
Sbjct: 180 ECVATNSAG 188
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 55/134 (41%), Gaps = 26/134 (19%)
Query: 244 CSAQGNPLPTIKWYKQDSPVEESDRIQRI------GSSLSISHVEES-DSGVWNCVANNS 296
C A G+P P + W K+ V S R + I G+ L I + D V+ CVA NS
Sbjct: 28 CQATGDPKPRVTWNKKGKKV-NSQRFETIEFDESAGAVLRIQPLRTPRDENVYECVAQNS 86
Query: 297 EGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKDESVIL 356
G+ + H K +L +L N + K+ E+ R + +
Sbjct: 87 VGEITV-------HAKLTVLREDQL---PSGFPNIDMGPQLKVVERTR--------TATM 128
Query: 357 PCSAQGNPLPTIKY 370
C+A GNP P I +
Sbjct: 129 LCAASGNPDPEITW 142
>pdb|2YD3|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 202
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Query: 234 VKKDESVILPCSAQGNPLPTIKWYKQDSPVEES---DRIQRIGS-SLSISHVEESDSGVW 289
V++ + + C+A GNP P I W+K PV+ S RI+++ S +L I EE+D G +
Sbjct: 120 VERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKY 179
Query: 290 NCVANNSEG 298
CVA NS G
Sbjct: 180 ECVATNSAG 188
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 55/134 (41%), Gaps = 26/134 (19%)
Query: 244 CSAQGNPLPTIKWYKQDSPVEESDRIQRI------GSSLSISHVEES-DSGVWNCVANNS 296
C A G+P P + W K+ V S R + I G+ L I + D V+ CVA NS
Sbjct: 28 CQATGDPKPRVTWNKKGKKV-NSQRFETIEFDESAGAVLRIQPLRTPRDENVYECVAQNS 86
Query: 297 EGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKDESVIL 356
G+ + H K +L +L N + K+ E+ R + +
Sbjct: 87 VGEITV-------HAKLTVLREDQL---PSGFPNIDMGPQLKVVERTR--------TATM 128
Query: 357 PCSAQGNPLPTIKY 370
C+A GNP P I +
Sbjct: 129 LCAASGNPDPEITW 142
>pdb|2YD4|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Chicken Receptor Protein Tyrosine Phosphatase Sigma
Length = 210
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 234 VKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI----GSSLSISHVEESDSGVW 289
V++ + + C+A GNP P I W+K PV+ S RI L I EE+D G +
Sbjct: 120 VERTRTATMLCAASGNPDPEITWFKDFLPVDPSTSNGRIKQLRSGGLQIESSEETDQGKY 179
Query: 290 NCVANNSEG 298
CVA+NS G
Sbjct: 180 ECVASNSAG 188
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 54/134 (40%), Gaps = 26/134 (19%)
Query: 244 CSAQGNPLPTIKWYKQDSPVEESDRIQRI------GSSLSISHVEES-DSGVWNCVANNS 296
C A G+P P + W K+ V S R + I G+ L I + D ++ CVA N
Sbjct: 28 CQATGDPKPRVTWNKKGKKV-NSQRFETIEFDESAGAVLRIQPLRTPRDENIYECVAQNP 86
Query: 297 EGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKDESVIL 356
G+ + H K +L +L N + K+ E+ R + +
Sbjct: 87 HGEVTV-------HAKLTVLREDQL---PPGFPNIDMGPQLKVVERTR--------TATM 128
Query: 357 PCSAQGNPLPTIKY 370
C+A GNP P I +
Sbjct: 129 LCAASGNPDPEITW 142
>pdb|1IE5|A Chain A, Nmr Structure Of The Third Immunoglobulin Domain From The
Neural Cell Adhesion Molecule
Length = 107
Score = 51.2 bits (121), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Query: 238 ESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI-----GSSLSISHVEESDSGVWNCV 292
+SV L C A G P PT+ W K P+E+ D ++ GS L I V++SD + C+
Sbjct: 29 QSVTLACDADGFPEPTMTWTKDGEPIEQEDNEEKYSFNYDGSELIIKKVDKSDEAEYICI 88
Query: 293 ANNSEGQDKMQLFIQ 307
A N G+ + ++
Sbjct: 89 AENKAGEQDATIHLK 103
>pdb|1NBQ|A Chain A, Crystal Structure Of Human Junctional Adhesion Molecule
Type 1
pdb|1NBQ|B Chain B, Crystal Structure Of Human Junctional Adhesion Molecule
Type 1
Length = 209
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 53/143 (37%), Gaps = 24/143 (16%)
Query: 61 LVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGELVEIASSNQVV-----VDVGHRIE 115
+ V RED G Y C VS + ++ +V L +V + S V +G+R
Sbjct: 70 ITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKL---IVLVPPSKPTVNIPSSATIGNRAV 126
Query: 116 LHCRVSPKRLSSAKAWLKDGLVLRRNSDEV----------------LVLDRVQREDAGMY 159
L C S W KDG+V+ N LV D + D G Y
Sbjct: 127 LTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEY 186
Query: 160 QCHIEDGKYHMLSSGELIIHQVD 182
C +G ++S + + V+
Sbjct: 187 SCEARNGYGTPMTSNAVRMEAVE 209
Score = 34.7 bits (78), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 33/95 (34%), Gaps = 21/95 (22%)
Query: 4 FIQVKSSLSIEMSPSGQVV-----VDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSD 58
+ +VK L + + PS V +G+R L C S W KDG+V+ N
Sbjct: 95 YGEVKVKLIVLVPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPK 154
Query: 59 EV----------------LVLDRVQREDAGMYQCH 77
LV D + D G Y C
Sbjct: 155 STRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCE 189
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/89 (20%), Positives = 36/89 (40%), Gaps = 16/89 (17%)
Query: 234 VKKDESVILPCSAQGNPLPTIKW------------YKQDSPVEESDRIQRIGSSLSISHV 281
+ ++ V L C+ G P ++W Y DR+ + + ++ V
Sbjct: 16 IPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSV 75
Query: 282 EESDSGVWNCV----ANNSEGQDKMQLFI 306
D+G + C+ NS G+ K++L +
Sbjct: 76 TREDTGTYTCMVSEEGGNSYGEVKVKLIV 104
>pdb|1TNM|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From
The Muscle Protein Titin: A New Member Of The I Set
pdb|1TNN|A Chain A, Tertiary Structure Of An Immunoglobulin-Like Domain From
The Muscle Protein Titin: A New Member Of The I Set
Length = 100
Score = 50.8 bits (120), Expect = 1e-06, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 45/87 (51%), Gaps = 4/87 (4%)
Query: 222 AAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQ----RIGSSLS 277
++++ K R + V + ES C G P+PT+ W ++ + S R Q + S+
Sbjct: 8 SSRILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFE 67
Query: 278 ISHVEESDSGVWNCVANNSEGQDKMQL 304
IS V+ SD G ++ V NSEG+ + +
Sbjct: 68 ISSVQASDEGNYSVVVENSEGKQEAEF 94
>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken
Length = 382
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 63/292 (21%), Positives = 118/292 (40%), Gaps = 43/292 (14%)
Query: 27 HRIELHCRVSPKRLSSAKAWLKDGLVLRRNSD--------EVLVLDRVQREDAGMYQCHV 78
++ L CR ++ + W +G L+ D ++++ + V+ +DAG YQC V
Sbjct: 23 EKVTLTCRARANPPATYR-WKMNGTELKMGPDSRYRLVAGDLVISNPVKAKDAGSYQC-V 80
Query: 79 SADDDSAQMSAQVIL-GGELVEIASS--NQVVVDVGHRIELHCRVSPKRLSSAKAWLKDG 135
+ + +S + L G L E ++ + V + G + C P + + WL
Sbjct: 81 ATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWL--- 137
Query: 136 LVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESD--RYRSYQCR 193
L + + R ++ ++G L I + + SD Y +
Sbjct: 138 --LNEFPNFIPADGR----------------RFVSQTTGNLYIAKTEASDLGNYSCFATS 179
Query: 194 GVNKLTGASLLSVNRGRLSLTENKRLLSA--AKMFEKHRILNVKKDESVILPCSAQGNPL 251
++ +T + ++ L+ + ++ + AK L + V L C A GNP+
Sbjct: 180 HIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALT---GQMVTLECFAFGNPV 236
Query: 252 PTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQ 303
P IKW K D ++ + L I +V+ D G + C A N +G+D Q
Sbjct: 237 PQIKWRKLDG--SQTSKWLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQ 286
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%)
Query: 244 CSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEG 298
C A G P P ++W + P+ +RI+ G L S + DSG++ CVA N G
Sbjct: 316 CVASGKPRPAVRWLRDGQPLASQNRIEVSGGELRFSKLVLEDSGMYQCVAENKHG 370
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 68/163 (41%), Gaps = 10/163 (6%)
Query: 25 VGHRIELHCRVSPKRLSSAKAWLK-DGLVLRR--NSDEVLVLDRVQREDAGMYQCHVSAD 81
G + L C + K W K DG + +S+ +L + V ED G Y+C
Sbjct: 221 TGQMVTLECFAFGNPVPQIK-WRKLDGSQTSKWLSSEPLLHIQNVDFEDEGTYECEAENI 279
Query: 82 DDSAQMSAQVILGGELVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVL-RR 140
++I+ + + D+G + C S K + + WL+DG L +
Sbjct: 280 KGRDTYQGRIIIHAQPDWLDVITDTEADIGSDLRWSCVASGKPRPAVR-WLRDGQPLASQ 338
Query: 141 NSDEV----LVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIH 179
N EV L ++ ED+GMYQC E+ + +S EL +
Sbjct: 339 NRIEVSGGELRFSKLVLEDSGMYQCVAENKHGTVYASAELTVQ 381
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/214 (21%), Positives = 82/214 (38%), Gaps = 31/214 (14%)
Query: 165 DGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAK 224
D +Y +++ G+L+I ++ SYQC N RG + E +
Sbjct: 53 DSRYRLVA-GDLVISNPVKAKDAGSYQCVATNA----------RGTVVSREASLRFGFLQ 101
Query: 225 MF--EKHRILNVKKDESVILPCSAQGN-PLPTIKW----YKQDSPVEESDRIQRIGSSLS 277
F E+ + + + V+ CS + P + +W + P + + + +L
Sbjct: 102 EFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLY 161
Query: 278 ISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAA 337
I+ E SD G ++C A + + + K+ LS + D + A
Sbjct: 162 IAKTEASDLGNYSCFATS-----HIDFITKSVFSKFSQLS-----LAAEDARQYAPSIKA 211
Query: 338 KMFEKHRILNVKKDESVILPCSAQGNPLPTIKYR 371
K L + V L C A GNP+P IK+R
Sbjct: 212 KFPADTYALT---GQMVTLECFAFGNPVPQIKWR 242
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 237 DESVILPCSAQGNPLPTIKWYKQDSPVE--ESDRIQRIGSSLSISH-VEESDSGVWNCVA 293
+E V L C A+ NP T +W + ++ R + + L IS+ V+ D+G + CVA
Sbjct: 22 EEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDLVISNPVKAKDAGSYQCVA 81
Query: 294 NNSEG 298
N+ G
Sbjct: 82 TNARG 86
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 40/183 (21%), Positives = 64/183 (34%), Gaps = 25/183 (13%)
Query: 21 VVVDVGHRIELHCRVSPKRLSSAKAWL---------KDGLVLRRNSDEVLVLDRVQREDA 71
V + G + C P + + WL DG + L + + + D
Sbjct: 111 VKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDL 170
Query: 72 GMYQCHVSADDDSAQMS-----AQVILGGE-------LVEIASSNQVVVDVGHRIELHCR 119
G Y C ++ D S +Q+ L E ++ G + L C
Sbjct: 171 GNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECF 230
Query: 120 VSPKRLSSAKAWLK-DGLVLRR--NSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGEL 176
+ K W K DG + +S+ +L + V ED G Y+C E+ K G +
Sbjct: 231 AFGNPVPQIK-WRKLDGSQTSKWLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRI 289
Query: 177 IIH 179
IIH
Sbjct: 290 IIH 292
>pdb|2VRA|A Chain A, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|B Chain B, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|C Chain C, Drosophila Robo Ig1-2 (Monoclinic Form)
pdb|2VRA|D Chain D, Drosophila Robo Ig1-2 (Monoclinic Form)
Length = 208
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 8/86 (9%)
Query: 222 AAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPV----EESDRIQRIGSSL- 276
+ ++ E L VKK+E L C +G P PTI+W+K PV ++S R+Q +L
Sbjct: 9 SPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALF 68
Query: 277 ---SISHVEESDSGVWNCVANNSEGQ 299
++ +E D G + CVA N GQ
Sbjct: 69 FYRTMQGKKEQDGGEYWCVAKNRVGQ 94
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 84/209 (40%), Gaps = 37/209 (17%)
Query: 100 IASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMY 159
I +VV L+C+V K + + W KDG + N + RVQ +D ++
Sbjct: 13 IEHPTDLVVKKNEPATLNCKVEGKPEPTIE-WFKDGEPVSTNEKKS---HRVQFKDGALF 68
Query: 160 QCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRL 219
GK GE Y C N++ A + L ++ R+
Sbjct: 69 FYRTMQGKKEQ-DGGE--------------YWCVAKNRVGQAVSRHASLQIAVLRDDFRV 113
Query: 220 LSAAKMFEKHRILNVKKDESVILPCSA-QGNPLPTIKWYKQDSPVEE--------SDRIQ 270
+ + V K E+ +L C +G P PT+ W K P+++ S R++
Sbjct: 114 --------EPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVR 165
Query: 271 RI-GSSLSISHVEESDSGVWNCVANNSEG 298
+ G +L IS+VE D G + C+A N G
Sbjct: 166 IVDGGNLLISNVEPIDEGNYKCIAQNLVG 194
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 336 AAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKY 370
+ ++ E L VKK+E L C +G P PTI++
Sbjct: 9 SPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEW 43
>pdb|2VR9|A Chain A, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|B Chain B, Drosophila Robo Ig1-2 (Tetragonal Form)
pdb|2VR9|C Chain C, Drosophila Robo Ig1-2 (Tetragonal Form)
Length = 217
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 8/86 (9%)
Query: 222 AAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPV----EESDRIQRIGSSL- 276
+ ++ E L VKK+E L C +G P PTI+W+K PV ++S R+Q +L
Sbjct: 9 SPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALF 68
Query: 277 ---SISHVEESDSGVWNCVANNSEGQ 299
++ +E D G + CVA N GQ
Sbjct: 69 FYRTMQGKKEQDGGEYWCVAKNRVGQ 94
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 84/209 (40%), Gaps = 37/209 (17%)
Query: 100 IASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMY 159
I +VV L+C+V K + + W KDG + N + RVQ +D ++
Sbjct: 13 IEHPTDLVVKKNEPATLNCKVEGKPEPTIE-WFKDGEPVSTNEKKS---HRVQFKDGALF 68
Query: 160 QCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRL 219
GK GE Y C N++ A + L ++ R+
Sbjct: 69 FYRTMQGKKEQ-DGGE--------------YWCVAKNRVGQAVSRHASLQIAVLRDDFRV 113
Query: 220 LSAAKMFEKHRILNVKKDESVILPCSA-QGNPLPTIKWYKQDSPVEE--------SDRIQ 270
+ + V K E+ +L C +G P PT+ W K P+++ S R++
Sbjct: 114 --------EPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVR 165
Query: 271 RI-GSSLSISHVEESDSGVWNCVANNSEG 298
+ G +L IS+VE D G + C+A N G
Sbjct: 166 IVDGGNLLISNVEPIDEGNYKCIAQNLVG 194
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 336 AAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKY 370
+ ++ E L VKK+E L C +G P PTI++
Sbjct: 9 SPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEW 43
>pdb|1RY7|B Chain B, Crystal Structure Of The 3 Ig Form Of Fgfr3c In Complex
With Fgf1
Length = 334
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 73/210 (34%), Gaps = 26/210 (12%)
Query: 99 EIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQ-----R 153
E Q+V G +EL C W+KDG L + ++ R+Q
Sbjct: 11 EPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLVGPQRLQVLNASH 70
Query: 154 EDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSL 213
ED+G Y C L+ L V +D S + V+ G
Sbjct: 71 EDSGAYSCR------QRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDT--GVDTGAPYW 122
Query: 214 TENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIG 273
T +R+ ++L V +V C A GNP P+I W K RI I
Sbjct: 123 TRPERM--------DKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIK 174
Query: 274 -----SSLSISHVEESDSGVWNCVANNSEG 298
SL + V SD G + CV N G
Sbjct: 175 LRHQQWSLVMESVVPSDRGNYTCVVENKFG 204
Score = 31.2 bits (69), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 61/186 (32%), Gaps = 41/186 (22%)
Query: 20 QVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQ-----REDAGMY 74
Q+V G +EL C W+KDG L + ++ R+Q ED+G Y
Sbjct: 17 QLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLVGPQRLQVLNASHEDSGAY 76
Query: 75 QC----------HVSADDDSAQMSAQ------------VILGGEL---VEIASSNQVVVD 109
C H S A S V G E + V
Sbjct: 77 SCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVP 136
Query: 110 VGHRIELHCRVSPKRLSSAKAWLKDGLVLR----------RNSDEVLVLDRVQREDAGMY 159
+ + C + S +WLK+G R R+ LV++ V D G Y
Sbjct: 137 AANTVRFRCPAAGNPTPSI-SWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNY 195
Query: 160 QCHIED 165
C +E+
Sbjct: 196 TCVVEN 201
>pdb|2V9Q|A Chain A, First And Second Ig Domains From Human Robo1
pdb|2V9R|A Chain A, First And Second Ig Domains From Human Robo1 (Form 2)
Length = 212
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 238 ESVILPC-SAQGNPLPTIKWYKQDSPVEESD-RIQRIGSSLSISHVEESDSGVWNCVANN 295
E ++ C +G+P PTI W K SP+++ D RI G L I++ +SD+G + CV N
Sbjct: 127 EPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIRGGKLMITYTRKSDAGKYVCVGTN 186
Query: 296 SEGQ 299
G+
Sbjct: 187 MVGE 190
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 43/89 (48%), Gaps = 11/89 (12%)
Query: 222 AAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVE---ESDRIQRI----GS 274
++ E L V K E L C A+G P PTI+WYK VE + R R+ GS
Sbjct: 9 PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGS 68
Query: 275 --SLSISHVEES--DSGVWNCVANNSEGQ 299
L I H +S D GV+ CVA N G+
Sbjct: 69 LFFLRIVHGRKSRPDEGVYVCVARNYLGE 97
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 37/167 (22%), Positives = 64/167 (38%), Gaps = 29/167 (17%)
Query: 21 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEV----------------LVLD 64
++V G L+C+ R + W K G + + D+ +V
Sbjct: 19 LIVSKGEPATLNCKAE-GRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHG 77
Query: 65 RVQREDAGMYQC---HVSADDDSAQMSAQV-ILGGELVEIASSNQVVVDVGHRIELHCRV 120
R R D G+Y C + + S S +V IL + + + + V+V VG + C+
Sbjct: 78 RKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQ--NPSDVMVAVGEPAVMECQP 135
Query: 121 SPKRLSSAKAWLKDGLVLRRNSDEV------LVLDRVQREDAGMYQC 161
+W KDG L + + L++ ++ DAG Y C
Sbjct: 136 PRGHPEPTISWKKDGSPLDDKDERITIRGGKLMITYTRKSDAGKYVC 182
>pdb|2EDJ|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human
Roundabout Homolog 2
Length = 100
Score = 47.8 bits (112), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Query: 237 DESVILPCSAQGNPLPTIKWYKQDSPVEESD---RIQRIGSSLSISHVEESDSGVWNCVA 293
D + +L C A G+PLP I W K+ D IQ G +L I ++ SD+G + CVA
Sbjct: 23 DGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQG-TLQIKNLRISDTGTYTCVA 81
Query: 294 NNSEGQ 299
+S G+
Sbjct: 82 TSSSGE 87
>pdb|1BIH|A Chain A, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
pdb|1BIH|B Chain B, Crystal Structure Of The Insect Immune Protein Hemolin: A
New Domain Arrangement With Implications For Homophilic
Adhesion
Length = 395
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/217 (23%), Positives = 81/217 (37%), Gaps = 38/217 (17%)
Query: 95 GELVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQRE 154
GE V S ++ G ++C + + K+G + N + DR+ R
Sbjct: 211 GEPVPQYVSKDMMAKAGDVTMIYCMYGSNPMGYPN-YFKNGKDVNGNPE-----DRITR- 263
Query: 155 DAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCR---GVNKLTGASLLSVNRGRL 211
H +SG+ ++ + + Y C GV K SL
Sbjct: 264 --------------HNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSL-------- 301
Query: 212 SLTENKRLLSAAKMFEK-HRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQ 270
LT ++SA K +K +++ VK+ + V +PC G P P + W P+ R
Sbjct: 302 KLT----VVSAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPL-SGGRAT 356
Query: 271 RIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQ 307
S L I V+ D G + C A N G + +Q
Sbjct: 357 VTDSGLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQ 393
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 79/358 (22%), Positives = 130/358 (36%), Gaps = 62/358 (17%)
Query: 31 LHCRVSPKRLSSAKAWLKDG---------LVLRRNSDEVLVLDRVQREDAGMYQCHVSAD 81
L C + +W KDG LR++ ++ L R Q D G YQC A+
Sbjct: 26 LECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLVFL-RPQASDEGHYQCF--AE 82
Query: 82 DDSAQMSAQVILGGELVEIAS---SNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVL 138
+ S++VI + IAS +++ G +L C + W K
Sbjct: 83 TPAGVASSRVISFRKTYLIASPAKTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGA 142
Query: 139 RRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKL 198
N+D V D +R AG DG + I+ + D SD Y+ Y C N
Sbjct: 143 DPNAD---VTDFDRRITAG------PDGNLYF-----TIVTKEDVSDIYK-YVCTAKNAA 187
Query: 199 TGASLLSVNRGRLSLTENKRLLSAAKMFEK-HRILNVKKDESVILPCSAQGNPLPTIKWY 257
++ V +T++ + + + + K + ++ C NP+ ++
Sbjct: 188 VDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVTMIYCMYGSNPMGYPNYF 247
Query: 258 KQDSPV--EESDRIQR----IGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHG 311
K V DRI R G L D GV+ C +N G+ +
Sbjct: 248 KNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQK--------- 298
Query: 312 KYHMLSSGELIIHQVDEKNKRLLSAAKMFEK-HRILNVKKDESVILPCSAQGNPLPTI 368
H L ++SA K +K +++ VK+ + V +PC G P P +
Sbjct: 299 --HSLKL-------------TVVSAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNV 341
>pdb|3KVQ|A Chain A, Crystal Structure Of Vegfr2 Extracellular Domain D7
Length = 108
Score = 46.6 bits (109), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 43/70 (61%), Gaps = 2/70 (2%)
Query: 238 ESVILPCSAQGNPLPTIKWYK-QDSPVEESDRIQRIGS-SLSISHVEESDSGVWNCVANN 295
ES+ + C+A GNP P I W+K ++ VE+S + + G+ +L+I V + D G++ C A +
Sbjct: 26 ESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQACS 85
Query: 296 SEGQDKMQLF 305
G K++ F
Sbjct: 86 VLGCAKVEAF 95
Score = 33.9 bits (76), Expect = 0.17, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 16/82 (19%)
Query: 25 VGHRIELHCRVS---PKRLSSAKAWLKD--------GLVLRRNSDEVLVLDRVQREDAGM 73
+G IE+ C S P ++ W KD G+VL+ + + L + RV++ED G+
Sbjct: 24 IGESIEVSCTASGNPPPQI----MWFKDNETLVEDSGIVLK-DGNRNLTIRRVRKEDEGL 78
Query: 74 YQCHVSADDDSAQMSAQVILGG 95
Y C + A++ A I+ G
Sbjct: 79 YTCQACSVLGCAKVEAFFIIEG 100
Score = 31.2 bits (69), Expect = 0.87, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 16/64 (25%)
Query: 110 VGHRIELHCRVS---PKRLSSAKAWLKD--------GLVLRRNSDEVLVLDRVQREDAGM 158
+G IE+ C S P ++ W KD G+VL+ + + L + RV++ED G+
Sbjct: 24 IGESIEVSCTASGNPPPQI----MWFKDNETLVEDSGIVLK-DGNRNLTIRRVRKEDEGL 78
Query: 159 YQCH 162
Y C
Sbjct: 79 YTCQ 82
>pdb|2EO9|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human
Roundabout Homo1
Length = 118
Score = 45.4 bits (106), Expect = 4e-05, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 234 VKKDESVILPCSAQGNPLPTIKWYKQDSPVEESD-RIQRIGSS-LSISHVEESDSGVWNC 291
V D + +L C A G+P+PTI W K V D RI+++ + L I + + D+G + C
Sbjct: 20 VAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGVLQIRYAKLGDTGRYTC 79
Query: 292 VANNSEGQDKMQLFIQ 307
+A+ G+ +I+
Sbjct: 80 IASTPSGEATWSAYIE 95
>pdb|2V9T|A Chain A, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 117
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 43/89 (48%), Gaps = 11/89 (12%)
Query: 222 AAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVE---ESDRIQRI----GS 274
++ E L V K E L C A+G P PTI+WYK VE + R R+ GS
Sbjct: 9 PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGS 68
Query: 275 --SLSISHVEES--DSGVWNCVANNSEGQ 299
L I H +S D GV+ CVA N G+
Sbjct: 69 LFFLRIVHGRKSRPDEGVYVCVARNYLGE 97
>pdb|3LCY|A Chain A, Titin Ig Tandem Domains A164-A165
pdb|3LCY|B Chain B, Titin Ig Tandem Domains A164-A165
pdb|3LCY|C Chain C, Titin Ig Tandem Domains A164-A165
pdb|3LCY|D Chain D, Titin Ig Tandem Domains A164-A165
Length = 197
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 6/73 (8%)
Query: 232 LNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGS-----SLSISHVEESDS 286
+ K E+ L C G PLP IKWY+ + +S R ++ S +L++ E+ D
Sbjct: 17 VTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQS-RKYKMSSDGRTHTLTVMTEEQEDE 75
Query: 287 GVWNCVANNSEGQ 299
GV+ C+A N G+
Sbjct: 76 GVYTCIATNEVGE 88
>pdb|2YD1|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Drosophila Receptor Protein Tyrosine Phosphatase Dlar
Length = 212
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 239 SVILPCSAQGNPLPTIKWYKQDSPVEESD-RIQRIGSSLSISHVEESDSGVWNCVANNSE 297
+V++ C A GNP P I W K + V+ S+ R L I + E D G + CVA NS
Sbjct: 127 TVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDGFLQIENSREEDQGKYECVAENSM 186
Query: 298 GQD 300
G +
Sbjct: 187 GTE 189
Score = 35.4 bits (80), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 51/134 (38%), Gaps = 24/134 (17%)
Query: 244 CSAQGNPLPTIKWYKQDSPVEESDRIQRI---GSSLSISHVEE----SDSGVWNCVANNS 296
C+A+G+P P+I W K V + + +SI +E D + CVA N
Sbjct: 28 CAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYECVAENG 87
Query: 297 EGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKDESVIL 356
G + + L I++ D K R++ V +V++
Sbjct: 88 VGD--------------AVSADATLTIYEGD-KTPAGFPVITQGPGTRVIEV--GHTVLM 130
Query: 357 PCSAQGNPLPTIKY 370
C A GNP P I +
Sbjct: 131 TCKAIGNPTPNIYW 144
>pdb|3PXJ|A Chain A, Tandem Ig Repeats Of Dlar
pdb|3PXJ|B Chain B, Tandem Ig Repeats Of Dlar
pdb|3PXJ|C Chain C, Tandem Ig Repeats Of Dlar
pdb|3PXJ|D Chain D, Tandem Ig Repeats Of Dlar
Length = 210
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 239 SVILPCSAQGNPLPTIKWYKQDSPVEESD-RIQRIGSSLSISHVEESDSGVWNCVANNSE 297
+V++ C A GNP P I W K + V+ S+ R L I + E D G + CVA NS
Sbjct: 129 TVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDGFLQIENSREEDQGKYECVAENSM 188
Query: 298 GQD 300
G +
Sbjct: 189 GTE 191
Score = 35.0 bits (79), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 54/135 (40%), Gaps = 26/135 (19%)
Query: 244 CSAQGNPLPTIKWYKQDSPVEESDR----IQRIGSSLSISHVEE----SDSGVWNCVANN 295
C+A+G+P P+I W K V + +++ G +SI +E D + CVA N
Sbjct: 30 CAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPG-GISILRIEPVRAGRDDAPYECVAEN 88
Query: 296 SEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKDESVI 355
G + + L I++ D K R++ V +V+
Sbjct: 89 GVGD--------------AVSADATLTIYEGD-KTPAGFPVITQGPGTRVIEV--GHTVL 131
Query: 356 LPCSAQGNPLPTIKY 370
+ C A GNP P I +
Sbjct: 132 MTCKAIGNPTPNIYW 146
>pdb|1TLK|A Chain A, X-Ray Structure Determination Of Telokin, The C-Terminal
Domain Of Myosin Light Chain Kinase, At 2.8 Angstroms
Resolution
Length = 154
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 244 CSAQGNPLPTIKWYKQDSPVEES-----DRIQRIGSSLSISHVEESDSGVWNCVANNSEG 298
C +G P P + W+K D+PV+ES D + SL+IS V D + C A NS G
Sbjct: 63 CKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLG 122
Query: 299 Q 299
+
Sbjct: 123 E 123
>pdb|1FHG|A Chain A, High Resolution Refinement Of Telokin
Length = 154
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 244 CSAQGNPLPTIKWYKQDSPVEES-----DRIQRIGSSLSISHVEESDSGVWNCVANNSEG 298
C +G P P + W+K D+PV+ES D + SL+IS V D + C A NS G
Sbjct: 63 CKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLG 122
Query: 299 Q 299
+
Sbjct: 123 E 123
>pdb|1E07|A Chain A, Model Of Human Carcinoembryonic Antigen By Homology
Modelling And Curve-Fitting To Experimental Solution
Scattering Data
Length = 642
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 62/151 (41%), Gaps = 16/151 (10%)
Query: 26 GHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHV--SADDD 83
G + L C + + +WL DG + + + L + + +++G+Y C SA
Sbjct: 396 GVNLSLSCHAA-SNPPAQYSWLIDGNIQQHTQE--LFISNITEKNSGLYTCQANNSASGH 452
Query: 84 SAQMSAQVILGGELVE--IASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLR-- 139
S + + EL + I+S+N V+ + C P+ ++ W +G L
Sbjct: 453 SRTTVKTITVSAELPKPSISSNNSKPVEDKDAVAFTCE--PEAQNTTYLWWVNGQSLPVS 510
Query: 140 -----RNSDEVLVLDRVQREDAGMYQCHIED 165
N + L L V R DA Y C I++
Sbjct: 511 PRLQLSNGNRTLTLFNVTRNDARAYVCGIQN 541
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 60/282 (21%), Positives = 103/282 (36%), Gaps = 62/282 (21%)
Query: 26 GHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHVSADDDSA 85
G + L C + + +W +G + S + L + + ++G Y C D
Sbjct: 218 GENLNLSCHAA-SNPPAQYSWFVNGTF--QQSTQELFIPNITVNNSGSYTCQAHNSDTGL 274
Query: 86 QMSA--QVILGGELVE--IASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLR-- 139
+ + + E + I S+N V+ + L C P+ ++ W + L
Sbjct: 275 NRTTVTTITVYAEPPKPFITSNNSNPVEDEDAVALTCE--PEIQNTTYLWWVNNQSLPVS 332
Query: 140 -----RNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRG 194
N + L L V R D G Y+C I++ EL VD SD
Sbjct: 333 PRLQLSNDNRTLTLLSVTRNDVGPYECGIQN---------EL---SVDHSD--------- 371
Query: 195 VNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTI 254
+L+V G + +S + + + + ++ L C A NP
Sbjct: 372 ------PVILNVLYG-----PDDPTISPSYTYYRPGV-------NLSLSCHAASNPPAQY 413
Query: 255 KWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNS 296
W + IQ+ L IS++ E +SG++ C ANNS
Sbjct: 414 SWLIDGN-------IQQHTQELFISNITEKNSGLYTCQANNS 448
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 47/247 (19%), Positives = 86/247 (34%), Gaps = 58/247 (23%)
Query: 61 LVLDRVQREDAGMYQCHV-SADDDSAQMSAQVILGGELVE--IASSNQVVVDVGHRIELH 117
L++ + + D G Y HV +D + + + Q + EL + I+S+N V+ +
Sbjct: 73 LLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISSNNSKPVEDKDAVAFT 132
Query: 118 CRVSPKRLSSAKAWLKDGLVLR-------RNSDEVLVLDRVQREDAGMYQCHIEDGKYHM 170
C P+ + W + L N + L L V R D Y+C ++
Sbjct: 133 CE--PETQDATYLWWVNNQSLPVSPRLQLSNGNRTLTLFNVTRNDTASYKCETQNPVSAR 190
Query: 171 LSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHR 230
S ++ N L G +++ S
Sbjct: 191 RSDSVIL------------------NVLYGPDAPTISPLNTSY----------------- 215
Query: 231 ILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWN 290
+ E++ L C A NP W+ + Q+ L I ++ ++SG +
Sbjct: 216 ----RSGENLNLSCHAASNPPAQYSWFVNGT-------FQQSTQELFIPNITVNNSGSYT 264
Query: 291 CVANNSE 297
C A+NS+
Sbjct: 265 CQAHNSD 271
>pdb|3CAF|A Chain A, Crystal Structure Of Hfgfr2 D2 Domain
pdb|3CU1|A Chain A, Crystal Structure Of 2:2:2 Fgfr2d2:fgf1:sos Complex
pdb|3CU1|C Chain C, Crystal Structure Of 2:2:2 Fgfr2d2:fgf1:sos Complex
pdb|3EUU|A Chain A, Crystal Structure Of The Fgfr2 D2 Domain
pdb|3EUU|B Chain B, Crystal Structure Of The Fgfr2 D2 Domain
Length = 100
Score = 41.6 bits (96), Expect = 7e-04, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
Query: 228 KHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRI-----QRIGSSLSISHVE 282
+ R+ V +V C A GNP+PT++W K ++ RI + SL + V
Sbjct: 14 EKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVV 73
Query: 283 ESDSGVWNCVANNSEG 298
SD G + CV N G
Sbjct: 74 PSDKGNYTCVVENEYG 89
>pdb|3K0W|A Chain A, Crystal Structure Of The Tandem Ig-Like C2-Type 2 Domains
Of The Human Mucosa-Associated Lymphoid Tissue Lymphoma
Translocation Protein 1
Length = 218
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/190 (20%), Positives = 72/190 (37%), Gaps = 30/190 (15%)
Query: 111 GHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHM 170
G ++L CR + + W K + + L+ + V +DAG Y C + +
Sbjct: 33 GQFVKLCCRATGHPFVQYQ-WFKMNKEIPNGNTSELIFNAVHVKDAGFYVCRVNNNFTFE 91
Query: 171 LSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHR 230
S Q+D D S+Q R ++E+K + +K
Sbjct: 92 FSQWS----QLDVCDIPESFQ----------------RSVDGVSESKLQICVEPTSQK-- 129
Query: 231 ILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWN 290
+ +++L C A G+P+P +W+K + P+ + + + + H W
Sbjct: 130 ---LMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKKLYMVPYVDLEH----QGTYWC 182
Query: 291 CVANNSEGQD 300
V N+ + QD
Sbjct: 183 HVYNDRDSQD 192
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/169 (22%), Positives = 69/169 (40%), Gaps = 23/169 (13%)
Query: 13 IEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAG 72
I ++P + V+ G ++L CR + + W K + + L+ + V +DAG
Sbjct: 21 ITVNPESKAVL-AGQFVKLCCRATGHPFVQYQ-WFKMNKEIPNGNTSELIFNAVHVKDAG 78
Query: 73 MYQCHVSADDDSAQMSAQVILGGELVEIASSNQVVVDVGHRIELHCRVSP--KRLSSAKA 130
Y C V+ ++ + + S L ++ +I S Q VD +L V P ++L
Sbjct: 79 FYVCRVN-NNFTFEFSQWSQL--DVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGST 135
Query: 131 ----------------WLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHI 163
W K+ L L + ++ ++ V E G Y CH+
Sbjct: 136 LVLQCVAVGSPIPHYQWFKNELPLTHETKKLYMVPYVDLEHQGTYWCHV 184
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Query: 8 KSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQ 67
+S L I + P+ Q ++ G + L C + + W K+ L L + ++ ++ V
Sbjct: 116 ESKLQICVEPTSQKLMP-GSTLVLQCVAVGSPIPHYQ-WFKNELPLTHETKKLYMVPYVD 173
Query: 68 REDAGMYQCHVSADDDS 84
E G Y CHV D DS
Sbjct: 174 LEHQGTYWCHVYNDRDS 190
>pdb|1WVZ|A Chain A, Solution Structure Of The D2 Domain Of The Fibroblast
Growth Factor
Length = 104
Score = 41.6 bits (96), Expect = 7e-04, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
Query: 228 KHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRI-----QRIGSSLSISHVE 282
+ R+ V +V C A GNP+PT++W K ++ RI + SL + V
Sbjct: 18 EKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVV 77
Query: 283 ESDSGVWNCVANNSEG 298
SD G + CV N G
Sbjct: 78 PSDKGNYTCVVENEYG 93
>pdb|2YR3|A Chain A, Solution Structure Of The Fourth Ig-Like Domain From
Myosin Light Chain Kinase, Smooth Muscle
Length = 99
Score = 41.6 bits (96), Expect = 8e-04, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 234 VKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIG-SSLSISHVEESDSGVWNCV 292
V + + +L CS +G P+P I W P++ + G + L I D G + C+
Sbjct: 23 VIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTCEAGVAELHIQDALPEDHGTYTCL 82
Query: 293 ANNSEGQ 299
A N+ GQ
Sbjct: 83 AENALGQ 89
>pdb|3DAR|A Chain A, Crystal Structure Of D2 Domain From Human Fgfr2
pdb|3DAR|B Chain B, Crystal Structure Of D2 Domain From Human Fgfr2
Length = 105
Score = 41.6 bits (96), Expect = 8e-04, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
Query: 228 KHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRI-----QRIGSSLSISHVE 282
+ R+ V +V C A GNP+PT++W K ++ RI + SL + V
Sbjct: 19 EKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVV 78
Query: 283 ESDSGVWNCVANNSEG 298
SD G + CV N G
Sbjct: 79 PSDKGNYTCVVENEYG 94
>pdb|2FDB|P Chain P, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
pdb|2FDB|R Chain R, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In
Complex With Fgf Receptor (Fgfr) 2c
Length = 220
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 11/77 (14%)
Query: 230 RILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGS--------SLSISHV 281
R+ V +V C A GNP+PT++W K +E + RIG SL + V
Sbjct: 17 RLHAVPAANTVKFRCPAGGNPMPTMRWLKNG---KEFKQEHRIGGYKVRNQHWSLIMESV 73
Query: 282 EESDSGVWNCVANNSEG 298
SD G + CV N G
Sbjct: 74 VPSDKGNYTCVVENEYG 90
>pdb|1IIL|E Chain E, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|F Chain F, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|G Chain G, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1IIL|H Chain H, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
Length = 220
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 43/95 (45%), Gaps = 14/95 (14%)
Query: 214 TENKR--LLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQR 271
+ NKR + + EK R+ V +V C A GNP+PT++W K +E + R
Sbjct: 2 SNNKRAPYWTNTEKMEK-RLHAVPAANTVKFRCPAGGNPMPTMRWLKNG---KEFKQEHR 57
Query: 272 IGS--------SLSISHVEESDSGVWNCVANNSEG 298
IG SL + V SD G + CV N G
Sbjct: 58 IGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYG 92
>pdb|1E0O|B Chain B, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex
pdb|1E0O|D Chain D, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex
Length = 219
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 43/95 (45%), Gaps = 14/95 (14%)
Query: 214 TENKR--LLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQR 271
+ NKR + + EK R+ V +V C A GNP+PT++W K +E + R
Sbjct: 1 SNNKRAPYWTNTEKMEK-RLHAVPAANTVKFRCPAGGNPMPTMRWLKNG---KEFKQEHR 56
Query: 272 IGS--------SLSISHVEESDSGVWNCVANNSEG 298
IG SL + V SD G + CV N G
Sbjct: 57 IGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYG 91
>pdb|2J8H|A Chain A, Structure Of The Immunoglobulin Tandem Repeat A168-A169 Of
Titin
pdb|2J8O|A Chain A, Structure Of The Immunoglobulin Tandem Repeat Of Titin
A168- A169
pdb|2J8O|B Chain B, Structure Of The Immunoglobulin Tandem Repeat Of Titin
A168- A169
Length = 197
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 6/83 (7%)
Query: 222 AAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESD---RIQRIGSS--- 275
A E+ R LNV+ + L C G+P P +KWY+Q + RIQ
Sbjct: 4 APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQ 63
Query: 276 LSISHVEESDSGVWNCVANNSEG 298
L I+ V + D+ V+ A N G
Sbjct: 64 LIIASVTDDDATVYQVRATNQGG 86
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 60/153 (39%), Gaps = 18/153 (11%)
Query: 155 DAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSL- 213
D Y+ G YH +LII V + D YQ R N+ G S+ G SL
Sbjct: 48 DGLKYRIQEFKGGYH-----QLIIASVTDDDA-TVYQVRATNQ--GGSV----SGTASLE 95
Query: 214 TENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQ--- 270
E + K E ++ + E V + G P P I W K ++ + Q
Sbjct: 96 VEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIV 155
Query: 271 -RIGSSLSISH-VEESDSGVWNCVANNSEGQDK 301
R +SL + VE D+G + A N G D+
Sbjct: 156 TRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQ 188
>pdb|2ILL|A Chain A, Anomalous Substructure Of Titin-A168169
Length = 195
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 6/83 (7%)
Query: 222 AAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESD---RIQRIGSS--- 275
A E+ R LNV+ + L C G+P P +KWY+Q + RIQ
Sbjct: 2 APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQ 61
Query: 276 LSISHVEESDSGVWNCVANNSEG 298
L I+ V + D+ V+ A N G
Sbjct: 62 LIIASVTDDDATVYQVRATNQGG 84
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 60/153 (39%), Gaps = 18/153 (11%)
Query: 155 DAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSL- 213
D Y+ G YH +LII V + D YQ R N+ G S+ G SL
Sbjct: 46 DGLKYRIQEFKGGYH-----QLIIASVTDDDA-TVYQVRATNQ--GGSV----SGTASLE 93
Query: 214 TENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQ--- 270
E + K E ++ + E V + G P P I W K ++ + Q
Sbjct: 94 VEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIV 153
Query: 271 -RIGSSLSISH-VEESDSGVWNCVANNSEGQDK 301
R +SL + VE D+G + A N G D+
Sbjct: 154 TRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQ 186
>pdb|1EV2|E Chain E, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|F Chain F, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|G Chain G, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
pdb|1EV2|H Chain H, Crystal Structure Of Fgf2 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 2
(Fgfr2)
Length = 220
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 43/95 (45%), Gaps = 14/95 (14%)
Query: 214 TENKR--LLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQR 271
+ NKR + + EK R+ V +V C A GNP+PT++W K +E + R
Sbjct: 2 SNNKRAPYWTNTEKMEK-RLHAVPAANTVKFRCPAGGNPMPTMRWLKNG---KEFKQEHR 57
Query: 272 IGS--------SLSISHVEESDSGVWNCVANNSEG 298
IG SL + V SD G + CV N G
Sbjct: 58 IGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYG 92
>pdb|3OJM|B Chain B, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring P253r Apert Mutation
Length = 231
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 43/95 (45%), Gaps = 14/95 (14%)
Query: 214 TENKR--LLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQR 271
+ NKR + + EK R+ V +V C A GNP+PT++W K +E + R
Sbjct: 10 SNNKRAPYWTNTEKMEK-RLHAVPAANTVKFRCPAGGNPMPTMRWLKNG---KEFKQEHR 65
Query: 272 IGS--------SLSISHVEESDSGVWNCVANNSEG 298
IG SL + V SD G + CV N G
Sbjct: 66 IGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYG 100
>pdb|1II4|E Chain E, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|F Chain F, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|G Chain G, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
pdb|1II4|H Chain H, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2
(Fgfr2) In Complex With Fgf2
Length = 220
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 43/95 (45%), Gaps = 14/95 (14%)
Query: 214 TENKR--LLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQR 271
+ NKR + + EK R+ V +V C A GNP+PT++W K +E + R
Sbjct: 2 SNNKRAPYWTNTEKMEK-RLHAVPAANTVKFRCPAGGNPMPTMRWLKNG---KEFKQEHR 57
Query: 272 IGS--------SLSISHVEESDSGVWNCVANNSEG 298
IG SL + V SD G + CV N G
Sbjct: 58 IGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYG 92
>pdb|3OJ2|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
pdb|3OJ2|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation
Length = 231
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 43/95 (45%), Gaps = 14/95 (14%)
Query: 214 TENKR--LLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQR 271
+ NKR + + EK R+ V +V C A GNP+PT++W K +E + R
Sbjct: 10 SNNKRAPYWTNTEKMEK-RLHAVPAFNTVKFRCPAGGNPMPTMRWLKNG---KEFKQEHR 65
Query: 272 IGS--------SLSISHVEESDSGVWNCVANNSEG 298
IG SL + V SD G + CV N G
Sbjct: 66 IGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYG 100
>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin
Length = 284
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 70/166 (42%), Gaps = 35/166 (21%)
Query: 155 DAGMYQCHI------------------EDGKYHML---SSGELIIHQVDESDRYRSYQCR 193
++G ++CH+ G Y M ++ L + +V + D + Y C
Sbjct: 21 ESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQ-YTCY 79
Query: 194 GVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPT 253
N + G S +L + E R + K E RI VK+DE C G+P
Sbjct: 80 ASN-VAGKDSCS---AQLGVQEPPRFI---KKLEPSRI--VKQDEHTRYECKIGGSPEIK 130
Query: 254 IKWYKQDSPVEESDRIQ----RIGSSLSISHVEESDSGVWNCVANN 295
+ WYK ++ ++ES + + + L + ++ DSG + C A+N
Sbjct: 131 VLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHN 176
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 59/264 (22%), Positives = 94/264 (35%), Gaps = 61/264 (23%)
Query: 51 LVLRRNSDEVLVLDRVQREDAGMYQCHVS--ADDDSAQMSAQVILGGELVEIASSNQVVV 108
+ L N+ + VL +V + DAG Y C+ S A DS V ++ +++V
Sbjct: 54 MTLVENTATLTVL-KVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVK 112
Query: 109 DVGH-RIELHCRVSPKRLSSAKAWLKDGLVLRRNSD---------EVLVLDRVQREDAGM 158
H R E SP+ W KD ++ +S VL + + ED+G
Sbjct: 113 QDEHTRYECKIGGSPE---IKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGD 169
Query: 159 YQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKR 218
Y C + SS L +V E +R + V L GA
Sbjct: 170 YTCEAHNAAGSASSSTSL---KVKEPPVFRK-KPHPVETLKGAD---------------- 209
Query: 219 LLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIG----S 274
V L C QG P + W+K + + + + +
Sbjct: 210 ---------------------VHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLT 248
Query: 275 SLSISHVEESDSGVWNCVANNSEG 298
S+ I +V+ +D G + C A+N G
Sbjct: 249 SIHILNVDSADIGEYQCKASNDVG 272
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 6/76 (7%)
Query: 238 ESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI----GSSLSISHVEESDSGVWNCVA 293
ES C G I W K + + + ++L++ V + D+G + C A
Sbjct: 21 ESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYA 80
Query: 294 NNSEGQD--KMQLFIQ 307
+N G+D QL +Q
Sbjct: 81 SNVAGKDSCSAQLGVQ 96
>pdb|2NZI|A Chain A, Crystal Structure Of Domains A168-A170 From Titin
pdb|2NZI|B Chain B, Crystal Structure Of Domains A168-A170 From Titin
Length = 305
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 6/83 (7%)
Query: 222 AAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESD---RIQRIGSS--- 275
A E+ R LNV+ + L C G+P P +KWY+Q + RIQ
Sbjct: 4 APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQ 63
Query: 276 LSISHVEESDSGVWNCVANNSEG 298
L I+ V + D+ V+ A N G
Sbjct: 64 LIIASVTDDDATVYQVRATNQGG 86
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 60/153 (39%), Gaps = 18/153 (11%)
Query: 155 DAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSL- 213
D Y+ G YH +LII V + D YQ R N+ G S+ G SL
Sbjct: 48 DGLKYRIQEFKGGYH-----QLIIASVTDDDA-TVYQVRATNQ--GGSV----SGTASLE 95
Query: 214 TENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQ--- 270
E + K E ++ + E V + G P P I W K ++ + Q
Sbjct: 96 VEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIV 155
Query: 271 -RIGSSLSISH-VEESDSGVWNCVANNSEGQDK 301
R +SL + VE D+G + A N G D+
Sbjct: 156 TRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQ 188
>pdb|3GRW|A Chain A, Fgfr3 In Complex With A Fab
Length = 241
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 31/74 (41%), Gaps = 5/74 (6%)
Query: 230 RILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIG-----SSLSISHVEES 284
++L V +V C A GNP P+I W K RI I SL + V S
Sbjct: 23 KLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPS 82
Query: 285 DSGVWNCVANNSEG 298
D G + CV N G
Sbjct: 83 DRGNYTCVVENKFG 96
>pdb|2Y25|A Chain A, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|B Chain B, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|C Chain C, Crystal Structure Of The Myomesin Domains My11-My13
pdb|2Y25|D Chain D, Crystal Structure Of The Myomesin Domains My11-My13
Length = 317
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 59/303 (19%), Positives = 118/303 (38%), Gaps = 56/303 (18%)
Query: 31 LHCRVSPKRLSSAKAWLKDGLVLRRNSDE-------VLVLDRVQREDAGMYQCHVSADDD 83
L C+V+ + + W KD + + L++ ++DAG+Y+ V DD
Sbjct: 26 LKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYE--VILKDD 83
Query: 84 SAQMSAQVILGGEL-----------VEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWL 132
+ +++ L E + +++++ + I+L+ V+ W
Sbjct: 84 RGKDKSRLKLVDEAFKELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWS 143
Query: 133 KDGLVLRRNSDEV----------LVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVD 182
+G +R SD V L ++ D G Y + DGK + +L D
Sbjct: 144 HNGSAIRY-SDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYD 202
Query: 183 ESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVIL 242
E+ Y +Q +L A++ NR R+ + ++ +++ +++ L
Sbjct: 203 EA--YAEFQ-----RLKQAAIAEKNRARV-------------LGGLPDVVTIQEGKALNL 242
Query: 243 PCSAQGNPLPTIKWYKQDSPVEESDRIQ---RIGSS--LSISHVEESDSGVWNCVANNSE 297
C+ G+P P + W K + + D G + +I+ V +DSG + V N
Sbjct: 243 TCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKY 302
Query: 298 GQD 300
G +
Sbjct: 303 GSE 305
>pdb|1F97|A Chain A, Soluble Part Of The Junction Adhesion Molecule From Mouse
Length = 212
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 50/129 (38%), Gaps = 27/129 (20%)
Query: 61 LVLDRVQREDAGMYQCHVSADDD------SAQMSAQVILGGELVEIASSNQVVVDVGHRI 114
+ V R+D G Y C VS + S ++ V + + SS V +G+R
Sbjct: 67 ITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSS----VTIGNRA 122
Query: 115 ELHCRVSPKRLSSAKAWLKDGL-VLRRNSDEV----------------LVLDRVQREDAG 157
L C S +W KDG+ +L ++ + L+ D V D+G
Sbjct: 123 VLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSG 182
Query: 158 MYQCHIEDG 166
Y C ++G
Sbjct: 183 EYYCQAQNG 191
Score = 34.7 bits (78), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 20/96 (20%), Positives = 40/96 (41%), Gaps = 12/96 (12%)
Query: 223 AKMFEKHRILNVKKDESVILPCSAQGNPLPTIKW------------YKQDSPVEESDRIQ 270
++ + V ++ES+ L C+ G P ++W Y +DR+
Sbjct: 2 GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVT 61
Query: 271 RIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFI 306
S ++ S V D+G + C+ + GQ+ ++ I
Sbjct: 62 FSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSI 97
>pdb|2XYC|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3i
Length = 291
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 41/83 (49%), Gaps = 13/83 (15%)
Query: 240 VILPCSAQGNPLPTIKWYK--QDSPVEESD-----RIQRIG----SSLSISHVEESDSGV 288
V L C A+G P+P I W + E D RI+ G SSL I V+ SDSG
Sbjct: 18 VTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGR 77
Query: 289 WNCVANNSEG--QDKMQLFIQYA 309
++C A + G Q M L I+YA
Sbjct: 78 YDCEAASRIGGHQKSMYLDIEYA 100
>pdb|2JLL|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3ii
Length = 389
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 41/83 (49%), Gaps = 13/83 (15%)
Query: 240 VILPCSAQGNPLPTIKWYK--QDSPVEESD-----RIQRIG----SSLSISHVEESDSGV 288
V L C A+G P+P I W + E D RI+ G SSL I V+ SDSG
Sbjct: 18 VTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGR 77
Query: 289 WNCVANNSEG--QDKMQLFIQYA 309
++C A + G Q M L I+YA
Sbjct: 78 YDCEAASRIGGHQKSMYLDIEYA 100
>pdb|1RHF|A Chain A, Crystal Structure Of Human Tyro3-D1d2
pdb|1RHF|B Chain B, Crystal Structure Of Human Tyro3-D1d2
Length = 182
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 14/79 (17%)
Query: 100 IASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEV------------LV 147
+ + ++ V G ++L+C V + W+KDG V++ N D++ L
Sbjct: 6 MGAPVKLTVSQGQPVKLNCSVEGXEEPDIQ-WVKDGAVVQ-NLDQLYIPVSEQHWIGFLS 63
Query: 148 LDRVQREDAGMYQCHIEDG 166
L V+R DAG Y C +EDG
Sbjct: 64 LKSVERSDAGRYWCQVEDG 82
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 52/127 (40%), Gaps = 18/127 (14%)
Query: 20 QVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEV------------LVLDRVQ 67
++ V G ++L+C V + W+KDG V++ N D++ L L V+
Sbjct: 11 KLTVSQGQPVKLNCSVEGXEEPDIQ-WVKDGAVVQ-NLDQLYIPVSEQHWIGFLSLKSVE 68
Query: 68 REDAGMYQCHVSADDDSAQMSAQVILGGELVEIAS--SNQVVVDVGHRIELHCR-VSPKR 124
R DAG Y C V D ++S V L E V + + V +L C V P
Sbjct: 69 RSDAGRYWCQVE-DGGETEISQPVWLTVEGVPFFTVEPKDLAVPPNAPFQLSCEAVGPPE 127
Query: 125 LSSAKAW 131
+ W
Sbjct: 128 PVTIVWW 134
Score = 31.6 bits (70), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 6/66 (9%)
Query: 232 LNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRI------QRIGSSLSISHVEESD 285
L V + + V L CS +G P I+W K + V+ D++ Q LS+ VE SD
Sbjct: 12 LTVSQGQPVKLNCSVEGXEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSD 71
Query: 286 SGVWNC 291
+G + C
Sbjct: 72 AGRYWC 77
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 7/92 (7%)
Query: 221 SAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPV-EESDRIQRIG----SS 275
SA + + R LN+ + L C P+ ++KW + V + R RI +
Sbjct: 351 SAPFIMDAPRDLNISEGRMAELKCRTP--PMSSVKWLLPNGTVLSHASRHPRISVLNDGT 408
Query: 276 LSISHVEESDSGVWNCVANNSEGQDKMQLFIQ 307
L+ SHV SD+GV+ C+ N G ++
Sbjct: 409 LNFSHVLLSDTGVYTCMVTNVAGNSNASAYLN 440
>pdb|2DM3|A Chain A, Solution Structure Of The Second Ig Domain Of Human
Palladin
Length = 110
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 39/94 (41%), Gaps = 10/94 (10%)
Query: 221 SAAKMFEKHRI-----LNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDR----IQR 271
S + F H + L V++ + + C G P P + W PV ++
Sbjct: 3 SGSSGFRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRE 62
Query: 272 IG-SSLSISHVEESDSGVWNCVANNSEGQDKMQL 304
G SL I V D+G++ C+A N GQ+ L
Sbjct: 63 NGVHSLIIEPVTSRDAGIYTCIATNRAGQNSFSL 96
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 11/68 (16%)
Query: 19 GQVVVDVGHRIELHCRVSPKRLSSAKAWLKDG----------LVLRRNSDEVLVLDRVQR 68
G + V G + C+VS + +W DG +++R N L+++ V
Sbjct: 17 GDLTVQEGKLCRMDCKVS-GLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTS 75
Query: 69 EDAGMYQC 76
DAG+Y C
Sbjct: 76 RDAGIYTC 83
>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated
Variant
Length = 284
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 69/166 (41%), Gaps = 35/166 (21%)
Query: 155 DAGMYQCHI------------------EDGKYHML---SSGELIIHQVDESDRYRSYQCR 193
++G ++CH+ G Y M ++ L + +V + D + Y C
Sbjct: 21 ESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQ-YTCY 79
Query: 194 GVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPT 253
N + G S +L + R + K E RI VK+DE C G+P
Sbjct: 80 ASN-VAGKDSCS---AQLGVQAPPRFI---KKLEPSRI--VKQDEHTRYECKIGGSPEIK 130
Query: 254 IKWYKQDSPVEESDRIQ----RIGSSLSISHVEESDSGVWNCVANN 295
+ WYK ++ ++ES + + + L + ++ DSG + C A+N
Sbjct: 131 VLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHN 176
Score = 31.6 bits (70), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 59/264 (22%), Positives = 94/264 (35%), Gaps = 61/264 (23%)
Query: 51 LVLRRNSDEVLVLDRVQREDAGMYQCHVS--ADDDSAQMSAQVILGGELVEIASSNQVVV 108
+ L N+ + VL +V + DAG Y C+ S A DS V ++ +++V
Sbjct: 54 MTLVENTATLTVL-KVTKGDAGQYTCYASNVAGKDSCSAQLGVQAPPRFIKKLEPSRIVK 112
Query: 109 DVGH-RIELHCRVSPKRLSSAKAWLKDGLVLRRNSD---------EVLVLDRVQREDAGM 158
H R E SP+ W KD ++ +S VL + + ED+G
Sbjct: 113 QDEHTRYECKIGGSPE---IKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGD 169
Query: 159 YQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKR 218
Y C + SS L +V E +R + V L GA
Sbjct: 170 YTCEAHNAAGSASSSTSL---KVKEPPVFRK-KPHPVETLKGAD---------------- 209
Query: 219 LLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIG----S 274
V L C QG P + W+K + + + + +
Sbjct: 210 ---------------------VHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLT 248
Query: 275 SLSISHVEESDSGVWNCVANNSEG 298
S+ I +V+ +D G + C A+N G
Sbjct: 249 SIHILNVDSADIGEYQCKASNDVG 272
>pdb|2OCW|A Chain A, Solution Structure Of Human Secretory Component
pdb|3CHN|S Chain S, Solution Structure Of Human Secretory Iga1
pdb|3CM9|S Chain S, Solution Structure Of Human Siga2
Length = 585
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 49/133 (36%), Gaps = 20/133 (15%)
Query: 56 NSDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGELVEIASSNQVVVDVGHRIE 115
N ++L+++ DAG Y C + D I+ GE + V +G ++
Sbjct: 403 NGTFTVILNQLTSRDAGFYWCLTNGDTLWRTTVEIKIIEGE-PNLKVPGNVTAVLGETLK 461
Query: 116 LHCRVSPKRLSSAKAWLK---DGLVLRRNSDE----------------VLVLDRVQREDA 156
+ C K S K W K G + DE L L+ V R D
Sbjct: 462 VPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADE 521
Query: 157 GMYQCHIEDGKYH 169
G Y C ++ G ++
Sbjct: 522 GWYWCGVKQGHFY 534
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 27/126 (21%), Positives = 53/126 (42%), Gaps = 30/126 (23%)
Query: 61 LVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGELVEIASSNQVVVDVGHRIELHCRV 120
+V+++++ DAG Y C D +S + +A + + E+ V D+ + HC +
Sbjct: 187 VVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPEL-----VYEDLRGSVTFHCAL 241
Query: 121 SPKRLSSAKAWLK---------------------DGLVLRRNSDE----VLVLDRVQRED 155
P+ + AK + +G +L D+ +V+ +++ED
Sbjct: 242 GPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKED 301
Query: 156 AGMYQC 161
AG Y C
Sbjct: 302 AGRYLC 307
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 50/132 (37%), Gaps = 31/132 (23%)
Query: 61 LVLDRVQREDAGMYQCHVSADD---DSAQMSAQVILGGELVEIASSNQVVVDV-GHRIEL 116
+V+ +++EDAG Y C +D + + + A + E I S VV V G + +
Sbjct: 292 VVITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVAV 351
Query: 117 HCRVSPKRLSSAKAWL---------------KDGLVLRR------------NSDEVLVLD 149
C + K S K W +G V + N ++L+
Sbjct: 352 LCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILN 411
Query: 150 RVQREDAGMYQC 161
++ DAG Y C
Sbjct: 412 QLTSRDAGFYWC 423
>pdb|2DL9|A Chain A, Solution Structure Of The Ig-Like Domain Of Human Leucine-
Rich Repeat-Containing Protein 4
Length = 103
Score = 37.4 bits (85), Expect = 0.014, Method: Composition-based stats.
Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 7/87 (8%)
Query: 230 RILNVKKDESVILPCSAQGNPLPTIKWYKQDSPV-EESDRIQRIG----SSLSISHVEES 284
R LN+ + L C P+ ++KW + V + R RI +L+ SHV S
Sbjct: 15 RDLNISEGRMAELKCRTP--PMSSVKWLLPNGTVLSHASRHPRISVLNDGTLNFSHVLLS 72
Query: 285 DSGVWNCVANNSEGQDKMQLFIQYAHG 311
D+GV+ C+ N G ++ + G
Sbjct: 73 DTGVYTCMVTNVAGNSNASAYLNVSSG 99
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
Query: 234 VKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIG----SSLSISHVEESDSGVW 289
V + +V C A G+P P I W + + R+ +L + + + D+G +
Sbjct: 397 VDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDGTLEVRYAQVQDNGTY 456
Query: 290 NCVANNSEGQDKM 302
C+A N+ G D M
Sbjct: 457 LCIAANAGGNDSM 469
>pdb|1DJS|A Chain A, Ligand-binding Portion Of Fibroblast Growth Factor
Receptor 2 In Complex With Fgf1
Length = 216
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 32/77 (41%), Gaps = 11/77 (14%)
Query: 230 RILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGS--------SLSISHV 281
R+ V +V C A GNP PT +W K +E + RIG SL V
Sbjct: 19 RLHAVPAANTVKFRCPAGGNPXPTXRWLKNG---KEFKQEHRIGGYKVRNQHWSLIXESV 75
Query: 282 EESDSGVWNCVANNSEG 298
SD G + CV N G
Sbjct: 76 VPSDKGNYTCVVENEYG 92
>pdb|2R15|A Chain A, Crystal Structure Of The Myomesin Domains 12 And 13
pdb|2R15|B Chain B, Crystal Structure Of The Myomesin Domains 12 And 13
Length = 212
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 34/166 (20%), Positives = 68/166 (40%), Gaps = 25/166 (15%)
Query: 146 LVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLS 205
L ++ D G Y + DGK + +L DE+ Y +Q +L A++
Sbjct: 61 LQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEA--YAEFQ-----RLKQAAIAE 113
Query: 206 VNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEE 265
NR R+ + ++ +++ +++ L C+ G+P P + W K + + +
Sbjct: 114 KNRARV-------------LGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQ 160
Query: 266 SDRIQ---RIGSS--LSISHVEESDSGVWNCVANNSEGQDKMQLFI 306
+D G + +I+ V +DSG + V N G + +
Sbjct: 161 TDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTV 206
>pdb|3PUC|A Chain A, Atomic Resolution Structure Of Titin Domain M7
Length = 99
Score = 36.6 bits (83), Expect = 0.022, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 4/69 (5%)
Query: 234 VKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQ----RIGSSLSISHVEESDSGVW 289
V D A G P PT W K + + + + + G L I + SDSG++
Sbjct: 18 VSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEIHKTDTSDSGLY 77
Query: 290 NCVANNSEG 298
C NS G
Sbjct: 78 TCTVKNSAG 86
>pdb|1NUN|B Chain B, Crystal Structure Analysis Of The Fgf10-fgfr2b Complex
Length = 230
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 32/77 (41%), Gaps = 11/77 (14%)
Query: 230 RILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGS--------SLSISHV 281
R+ V +V C A GNP PT +W K +E + RIG SL V
Sbjct: 26 RLHAVPAANTVKFRCPAGGNPXPTXRWLKNG---KEFKQEHRIGGYKVRNQHWSLIXESV 82
Query: 282 EESDSGVWNCVANNSEG 298
SD G + CV N G
Sbjct: 83 VPSDKGNYTCVVENEYG 99
>pdb|2A38|A Chain A, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|B Chain B, Crystal Structure Of The N-Terminus Of Titin
pdb|2A38|C Chain C, Crystal Structure Of The N-Terminus Of Titin
Length = 194
Score = 35.8 bits (81), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 58/134 (43%), Gaps = 20/134 (14%)
Query: 194 GVNKLTGASLLSVNRGRLSL---------TENKRLLSAAKMFEKHRI-----LNVKKDES 239
G KLT ++ N GR SL T LL A+ + + + V++
Sbjct: 61 GRAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQ 120
Query: 240 VILPCSAQGNPLPTIKWYKQDSPVEES--DRIQRIGS--SLSISHVEESDSGVWNCVANN 295
V L G P P +K+Y+ + ++ S +I + G SL I+ DSG ++ A N
Sbjct: 121 VRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATN 180
Query: 296 SEGQ--DKMQLFIQ 307
S G+ +L +Q
Sbjct: 181 SVGRATSTAELLVQ 194
>pdb|1YA5|A Chain A, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|1YA5|B Chain B, Crystal Structure Of The Titin Domains Z1z2 In Complex
With Telethonin
pdb|2F8V|A Chain A, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|B Chain B, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|C Chain C, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
pdb|2F8V|D Chain D, Structure Of Full Length Telethonin In Complex With The
N-Terminus Of Titin
Length = 201
Score = 35.8 bits (81), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 58/134 (43%), Gaps = 20/134 (14%)
Query: 194 GVNKLTGASLLSVNRGRLSL---------TENKRLLSAAKMFEKHRI-----LNVKKDES 239
G KLT ++ N GR SL T LL A+ + + + V++
Sbjct: 61 GRAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQ 120
Query: 240 VILPCSAQGNPLPTIKWYKQDSPVEES--DRIQRIGS--SLSISHVEESDSGVWNCVANN 295
V L G P P +K+Y+ + ++ S +I + G SL I+ DSG ++ A N
Sbjct: 121 VRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATN 180
Query: 296 SEGQ--DKMQLFIQ 307
S G+ +L +Q
Sbjct: 181 SVGRATSTAELLVQ 194
>pdb|1U2H|A Chain A, X-Ray Structure Of The N-Terminally Truncated Human Apep-1
Length = 99
Score = 35.4 bits (80), Expect = 0.051, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 9/73 (12%)
Query: 233 NVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSS-------LSISHVEESD 285
+V++ + VI+ QG P P + W + PV R R L I E D
Sbjct: 16 SVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQR--RFAEEAEGGLCRLRILAAERGD 73
Query: 286 SGVWNCVANNSEG 298
+G + C A N G
Sbjct: 74 AGFYTCKAVNEYG 86
>pdb|1IRA|Y Chain Y, Complex Of The Interleukin-1 Receptor With The
Interleukin-1 Receptor Antagonist (il1ra)
pdb|4GAF|B Chain B, Crystal Structure Of Ebi-005, A Chimera Of Human Il-1beta
And Il-1ra, Bound To Human Interleukin-1 Receptor Type 1
Length = 319
Score = 35.0 bits (79), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 48/104 (46%), Gaps = 5/104 (4%)
Query: 227 EKHRILNVKKDESVILPCSAQGNPLP-TIKWYKQDS--PV--EESDRIQRIGSSLSISHV 281
E+ IL +E + PC N TI WYK DS PV E++ RI + L
Sbjct: 10 EEKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPA 69
Query: 282 EESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQ 325
+ DSG + CV NS ++++ ++ + ++ + + I Q
Sbjct: 70 KVEDSGHYYCVVRNSSYCLRIKISAKFVENEPNLCYNAQAIFKQ 113
>pdb|1G0Y|R Chain R, Il-1 Receptor Type 1 Complexed With Antagonist Peptide
Af10847
Length = 312
Score = 35.0 bits (79), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 48/104 (46%), Gaps = 5/104 (4%)
Query: 227 EKHRILNVKKDESVILPCSAQGNPLP-TIKWYKQDS--PV--EESDRIQRIGSSLSISHV 281
E+ IL +E + PC N TI WYK DS PV E++ RI + L
Sbjct: 7 EEKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPA 66
Query: 282 EESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQ 325
+ DSG + CV NS ++++ ++ + ++ + + I Q
Sbjct: 67 KVEDSGHYYCVVRNSSYCLRIKISAKFVENEPNLCYNAQAIFKQ 110
>pdb|1ITB|B Chain B, Type-1 Interleukin-1 Receptor Complexed With Interleukin-1
Beta
Length = 315
Score = 35.0 bits (79), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 48/104 (46%), Gaps = 5/104 (4%)
Query: 227 EKHRILNVKKDESVILPCSAQGNPLP-TIKWYKQDS--PV--EESDRIQRIGSSLSISHV 281
E+ IL +E + PC N TI WYK DS PV E++ RI + L
Sbjct: 10 EEKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPA 69
Query: 282 EESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQ 325
+ DSG + CV NS ++++ ++ + ++ + + I Q
Sbjct: 70 KVEDSGHYYCVVRNSSYCLRIKISAKFVENEPNLCYNAQAIFKQ 113
>pdb|2DM2|A Chain A, Solution Structure Of The First Ig Domain Of Human
Palladin
Length = 110
Score = 35.0 bits (79), Expect = 0.075, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 36/86 (41%), Gaps = 7/86 (8%)
Query: 221 SAAKMFE-KHRILNVKKDESVILPCSAQGNPLPTIKWY---KQDSPVEESDRIQRIGSSL 276
S A FE K + + + V C GNP P I W+ KQ SP + IQR
Sbjct: 6 SGAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGT 65
Query: 277 SISHVEES---DSGVWNCVANNSEGQ 299
H S D G + +A N +G+
Sbjct: 66 CSLHTTASTLDDDGNYTIMAANPQGR 91
>pdb|4DEP|B Chain B, Structure Of The Il-1b Signaling Complex
pdb|4DEP|E Chain E, Structure Of The Il-1b Signaling Complex
Length = 321
Score = 35.0 bits (79), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 48/104 (46%), Gaps = 5/104 (4%)
Query: 227 EKHRILNVKKDESVILPCSAQGNPLP-TIKWYKQDS--PV--EESDRIQRIGSSLSISHV 281
E+ IL +E + PC N TI WYK DS PV E++ RI + L
Sbjct: 12 EEKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPA 71
Query: 282 EESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQ 325
+ DSG + CV NS ++++ ++ + ++ + + I Q
Sbjct: 72 KVEDSGHYYCVVRNSSYCLRIKISAKFVENEPNLCYNAQAIFKQ 115
>pdb|3QR2|A Chain A, Wild Type Cd147 Ig0 Domain
pdb|3QR2|B Chain B, Wild Type Cd147 Ig0 Domain
Length = 137
Score = 35.0 bits (79), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 17/81 (20%)
Query: 239 SVILPCSAQGNPLPTIKWYKQD-------SPVEESDRIQRI----------GSSLSISHV 281
SV L C A G+P+P I+W+ + S + + R+ R+ S++SI +
Sbjct: 38 SVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTISIDTL 97
Query: 282 EESDSGVWNCVANNSEGQDKM 302
E D+G + C A+N ++ +
Sbjct: 98 VEEDTGTYECRASNDPDRNHL 118
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 32/85 (37%), Gaps = 21/85 (24%)
Query: 25 VGHRIELHCRVSPKRLSSAKAW------------LKDGLVLRR---------NSDEVLVL 63
VG +ELHC + + W L DG L R ++ + +
Sbjct: 35 VGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTISI 94
Query: 64 DRVQREDAGMYQCHVSADDDSAQMS 88
D + ED G Y+C S D D ++
Sbjct: 95 DTLVEEDTGTYECRASNDPDRNHLT 119
>pdb|2KDG|A Chain A, Solution Structure Of The 1st Ig Domain Of Myotilin
Length = 100
Score = 34.7 bits (78), Expect = 0.078, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
Query: 248 GNPLPTIKWYKQDSPVEESDRIQRIGS-----SLSISHVEESDSGVWNCVANNSEGQ 299
G P P + WY V+ D + I S SL V SD+G + CVA N G+
Sbjct: 31 GLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRASDAGAYACVAKNRAGE 87
>pdb|2CPC|A Chain A, Solution Structure Of Rsgi Ruh-030, An Ig Like Domain
From Human Cdna
Length = 113
Score = 34.7 bits (78), Expect = 0.080, Method: Composition-based stats.
Identities = 29/86 (33%), Positives = 41/86 (47%), Gaps = 15/86 (17%)
Query: 17 PSGQVVVDVG--HRIELHCRVSPKRLSSAKAWLKDG---------LVLRRNSDEVLVLDR 65
PSG+V V R+ L C + R + W KDG L+ + ++ LVL
Sbjct: 17 PSGKVYVAAVRLERVVLTCELC--RPWAEVRWTKDGEEVVESPALLLQKEDTVRRLVLPA 74
Query: 66 VQREDAGMYQCHVSADDDSAQMSAQV 91
VQ ED+G Y C + DD+SA + V
Sbjct: 75 VQLEDSGEYLCEI--DDESASFTVTV 98
Score = 30.4 bits (67), Expect = 1.8, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 11/62 (17%)
Query: 113 RIELHCRVSPKRLSSAKAWLKDG---------LVLRRNSDEVLVLDRVQREDAGMYQCHI 163
R+ L C + R + W KDG L+ + ++ LVL VQ ED+G Y C I
Sbjct: 30 RVVLTCELC--RPWAEVRWTKDGEEVVESPALLLQKEDTVRRLVLPAVQLEDSGEYLCEI 87
Query: 164 ED 165
+D
Sbjct: 88 DD 89
>pdb|3QQN|A Chain A, The Retinal Specific Cd147 Ig0 Domain: From Molecular
Structure To Biological Activity
pdb|3QQN|B Chain B, The Retinal Specific Cd147 Ig0 Domain: From Molecular
Structure To Biological Activity
Length = 137
Score = 34.7 bits (78), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 17/81 (20%)
Query: 239 SVILPCSAQGNPLPTIKWYKQD-------SPVEESDRIQRI----------GSSLSISHV 281
SV L C A G+P+P I+W+ + S + + R+ R+ S++SI +
Sbjct: 38 SVELHCEAVGSPVPEIQWWFEGQGPNDIXSQLWDGARLDRVHIHATYHQHAASTISIDTL 97
Query: 282 EESDSGVWNCVANNSEGQDKM 302
E D+G + C A+N ++ +
Sbjct: 98 VEEDTGTYECRASNDPDRNHL 118
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 32/85 (37%), Gaps = 21/85 (24%)
Query: 25 VGHRIELHCRVSPKRLSSAKAW------------LKDGLVLRR---------NSDEVLVL 63
VG +ELHC + + W L DG L R ++ + +
Sbjct: 35 VGGSVELHCEAVGSPVPEIQWWFEGQGPNDIXSQLWDGARLDRVHIHATYHQHAASTISI 94
Query: 64 DRVQREDAGMYQCHVSADDDSAQMS 88
D + ED G Y+C S D D ++
Sbjct: 95 DTLVEEDTGTYECRASNDPDRNHLT 119
>pdb|2XY2|A Chain A, Crystal Structure Of Ncam2 Ig1-2
Length = 189
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 6/69 (8%)
Query: 238 ESVILPCSAQGNPLPTIKWYK-QDSPVEESDRI----QRIGSSLSISHVEESDSGVWNCV 292
ES C+A G P +I WY Q + + R+ + + S L+I + D+G++ C
Sbjct: 18 ESKFFTCTAIGEP-ESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQ 76
Query: 293 ANNSEGQDK 301
A +++GQ +
Sbjct: 77 ATDAKGQTQ 85
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 45/106 (42%), Gaps = 16/106 (15%)
Query: 69 EDAGMYQCHVSADDDSAQMSAQVILGGELVEIASSNQVV----VDVGHRIELHCRVSPKR 124
EDAG+Y+C + D A V+L E+ + + +VV G E+ CRVS
Sbjct: 68 EDAGIYRCQ-ATDAKGQTQEATVVL--EIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSP 124
Query: 125 LSSAKAWLKDGLVLRRNSDEVLVL--------DRVQREDAGMYQCH 162
+ A +WL + SD + + + D G+Y+C
Sbjct: 125 -APAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCE 169
>pdb|3BFO|A Chain A, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The
Human Mucosa-Associated Lymphoid Tissue Lymphoma
Translocation Protein 1
pdb|3BFO|B Chain B, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The
Human Mucosa-Associated Lymphoid Tissue Lymphoma
Translocation Protein 1
pdb|3BFO|C Chain C, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The
Human Mucosa-Associated Lymphoid Tissue Lymphoma
Translocation Protein 1
pdb|3BFO|D Chain D, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The
Human Mucosa-Associated Lymphoid Tissue Lymphoma
Translocation Protein 1
Length = 91
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 2/89 (2%)
Query: 9 SSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQR 68
S L I + P+ Q ++ G + L C + + W K+ L L + ++ ++ V
Sbjct: 2 SKLQICVEPTSQKLMP-GSTLVLQCVAVGSPIPHYQ-WFKNELPLTHETKKLYMVPYVDL 59
Query: 69 EDAGMYQCHVSADDDSAQMSAQVILGGEL 97
E G Y CHV D DS I+ EL
Sbjct: 60 EHQGTYWCHVYNDRDSQDSKKVEIIIDEL 88
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 239 SVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEG 298
+++L C A G+P+P +W+K + P+ + + + + H W V N+ +
Sbjct: 20 TLVLQCVAVGSPIPHYQWFKNELPLTHETKKLYMVPYVDLEH----QGTYWCHVYNDRDS 75
Query: 299 QD 300
QD
Sbjct: 76 QD 77
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 34/88 (38%), Gaps = 10/88 (11%)
Query: 17 PSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN---------SDEVLVLDRVQ 67
P + V G EL CR S L+S +G V+ SD L V
Sbjct: 347 PPADLNVTEGMAAELKCRAS-TSLTSVSWITPNGTVMTHGAYKVRIAVLSDGTLNFTNVT 405
Query: 68 REDAGMYQCHVSADDDSAQMSAQVILGG 95
+D GMY C VS + SA + + G
Sbjct: 406 VQDTGMYTCMVSNSVGNTTASATLNVTG 433
>pdb|1VGE|L Chain L, Tr1.9 Fab Fragment Of A Human Igg1 Kappa Autoantibody
pdb|1IGA|C Chain C, Model Of Human Iga1 Determined By Solution Scattering
Curve- Fitting And Homology Modelling
pdb|1IGA|D Chain D, Model Of Human Iga1 Determined By Solution Scattering
Curve- Fitting And Homology Modelling
pdb|1R70|A Chain A, Model Of Human Iga2 Determined By Solution Scattering,
Curve Fitting And Homology Modelling
pdb|1R70|C Chain C, Model Of Human Iga2 Determined By Solution Scattering,
Curve Fitting And Homology Modelling
pdb|2ESG|L Chain L, Solution Structure Of The Complex Between Immunoglobulin
Iga1 And Human Serum Albumin
pdb|2ESG|M Chain M, Solution Structure Of The Complex Between Immunoglobulin
Iga1 And Human Serum Albumin
pdb|2QTJ|L Chain L, Solution Structure Of Human Dimeric Immunoglobulin A
pdb|2QTJ|M Chain M, Solution Structure Of Human Dimeric Immunoglobulin A
pdb|2QTJ|N Chain N, Solution Structure Of Human Dimeric Immunoglobulin A
pdb|2QTJ|O Chain O, Solution Structure Of Human Dimeric Immunoglobulin A
pdb|3CHN|L Chain L, Solution Structure Of Human Secretory Iga1
pdb|3CHN|M Chain M, Solution Structure Of Human Secretory Iga1
pdb|3CHN|N Chain N, Solution Structure Of Human Secretory Iga1
pdb|3CHN|O Chain O, Solution Structure Of Human Secretory Iga1
pdb|3CM9|L Chain L, Solution Structure Of Human Siga2
pdb|3CM9|M Chain M, Solution Structure Of Human Siga2
pdb|3CM9|N Chain N, Solution Structure Of Human Siga2
pdb|3CM9|O Chain O, Solution Structure Of Human Siga2
Length = 214
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 37/90 (41%), Gaps = 24/90 (26%)
Query: 96 ELVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAW------------------LKDGLV 137
ELV S + + VG R+ + CR S + +SSA AW L+ G+
Sbjct: 1 ELVMTQSPSSLSASVGDRVNIACRAS-QGISSALAWYQQKPGKAPRLLIYDASNLESGVP 59
Query: 138 LR-----RNSDEVLVLDRVQREDAGMYQCH 162
R +D L + +Q ED +Y C
Sbjct: 60 SRFSGSGSGTDFTLTISSLQPEDFAIYYCQ 89
>pdb|2LVC|A Chain A, Solution Nmr Structure Of Ig Like Domain (805-892) Of
Obscurin-Like Protein 1 From Homo Sapiens, Northeast
Structural Genomics Consortium (Nesg) Target Hr8578k
Length = 91
Score = 33.9 bits (76), Expect = 0.13, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Query: 228 KHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRI----QRIGSSLSISHVEE 283
+H ++ E V+L C P ++WYK VEESD + + L + +
Sbjct: 12 EHVFVHAITSECVMLACEVDREDAP-VRWYKDGQEVEESDFVVLENEGPHRRLVLPATQP 70
Query: 284 SDSGVWNCVANN 295
SD G + CVA +
Sbjct: 71 SDGGEFQCVAGD 82
>pdb|2VAJ|A Chain A, Crystal Structure Of Ncam2 Ig1 (I4122 Cell Unit)
Length = 93
Score = 33.9 bits (76), Expect = 0.14, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 6/69 (8%)
Query: 238 ESVILPCSAQGNPLPTIKWYK-QDSPVEESDRI----QRIGSSLSISHVEESDSGVWNCV 292
ES C+A G P +I WY Q + + R+ + + S L+I + D+G++ C
Sbjct: 16 ESKFFTCTAIGEP-ESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQ 74
Query: 293 ANNSEGQDK 301
A +++GQ +
Sbjct: 75 ATDAKGQTQ 83
>pdb|2LQR|A Chain A, Nmr Structure Of Ig3 Domain Of Palladin
Length = 108
Score = 33.9 bits (76), Expect = 0.15, Method: Composition-based stats.
Identities = 22/66 (33%), Positives = 28/66 (42%), Gaps = 6/66 (9%)
Query: 240 VILPCSAQGNPLPTIKWY---KQDSPVEESDRIQRIGSSLSISHVEES---DSGVWNCVA 293
V C GNP P I W+ KQ SP + IQR H S D G + +A
Sbjct: 25 VTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMA 84
Query: 294 NNSEGQ 299
N +G+
Sbjct: 85 ANPQGR 90
>pdb|3OJV|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
pdb|3OJV|D Chain D, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of
Fgfr1c Exhibiting An Ordered Ligand
Specificity-Determining Betac'-Betae Loop
Length = 226
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 5/70 (7%)
Query: 234 VKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRI-----QRIGSSLSISHVEESDSGV 288
V ++V C + G P PT++W K + RI + S+ + V SD G
Sbjct: 29 VPAAKTVKFKCPSSGTPQPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKGN 88
Query: 289 WNCVANNSEG 298
+ C+ N G
Sbjct: 89 YTCIVENEYG 98
>pdb|2X1X|R Chain R, Crystal Structure Of Vegf-C In Complex With Domains 2 And
3 Of Vegfr2 In A Tetragonal Crystal Form
pdb|2X1W|L Chain L, Crystal Structure Of Vegf-C In Complex With Domains 2 And
3 Of Vegfr2
pdb|2X1W|M Chain M, Crystal Structure Of Vegf-C In Complex With Domains 2 And
3 Of Vegfr2
pdb|2X1W|N Chain N, Crystal Structure Of Vegf-C In Complex With Domains 2 And
3 Of Vegfr2
pdb|2X1W|O Chain O, Crystal Structure Of Vegf-C In Complex With Domains 2 And
3 Of Vegfr2
Length = 213
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 32/145 (22%), Positives = 57/145 (39%), Gaps = 22/145 (15%)
Query: 44 KAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHVSADDDSAQ--MSAQVILGGELVEI- 100
K ++ DG + +S + + AGM C +D+S Q M V++G + ++
Sbjct: 49 KRFVPDGNRISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVV 108
Query: 101 -ASSNQVVVDVGHRIELHCRV-------------SPKRLSSAKAWLKDGLVLRRNSD--- 143
+ S+ + + VG ++ L+C P K + L + S+
Sbjct: 109 LSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKK 168
Query: 144 --EVLVLDRVQREDAGMYQCHIEDG 166
L +D V R D G+Y C G
Sbjct: 169 FLSTLTIDGVTRSDQGLYTCAASSG 193
>pdb|3QP3|A Chain A, Crystal Structure Of Titin Domain M4, Tetragonal Form
pdb|3QP3|B Chain B, Crystal Structure Of Titin Domain M4, Tetragonal Form
pdb|3QP3|C Chain C, Crystal Structure Of Titin Domain M4, Tetragonal Form
Length = 103
Score = 33.5 bits (75), Expect = 0.19, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 4/59 (6%)
Query: 245 SAQGNPLPTIKWYKQDSPVEESDRIQRIGSS----LSISHVEESDSGVWNCVANNSEGQ 299
+ Q P +KWY ++ES +I +S L I DSG + V N +G+
Sbjct: 31 NVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVLTLEILDCHTDDSGTYRAVCTNYKGE 89
>pdb|1CVS|C Chain C, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1CVS|D Chain D, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex
pdb|1FQ9|C Chain C, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
pdb|1FQ9|D Chain D, Crystal Structure Of A Ternary Fgf2-Fgfr1-Heparin Complex
Length = 225
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 5/70 (7%)
Query: 234 VKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRI-----QRIGSSLSISHVEESDSGV 288
V ++V C + G P PT++W K + RI + S+ + V SD G
Sbjct: 28 VPAAKTVKFKCPSSGTPQPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKGN 87
Query: 289 WNCVANNSEG 298
+ C+ N G
Sbjct: 88 YTCIVENEYG 97
>pdb|1JBJ|A Chain A, Cd3 Epsilon And Gamma Ectodomain Fragment Complex In
Single- Chain Construct
Length = 186
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 62/166 (37%), Gaps = 37/166 (22%)
Query: 26 GHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVL-DRVQREDAGMYQCHVSADDDS 84
G +EL C P W K+G L + D+ LVL D + ED+G Y C+ A + +
Sbjct: 14 GTSVELTC---PLDSDENLKWEKNGQELPQKHDKHLVLQDFSEVEDSGYYVCYTPASNKN 70
Query: 85 AQMSAQVILGGELVEIA----------------------SSNQVVVDVGHR----IELHC 118
+ + +G + N V VD G R + L C
Sbjct: 71 TYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVD-GSRGDGSVLLTC 129
Query: 119 RVSPKRLSSAKAWLKDGLVLR--RNSDEVLVLDRVQREDAGMYQCH 162
++ K + WLKDG ++ + L ++ G YQC
Sbjct: 130 GLTDKTIK----WLKDGSIISPLNATKNTWNLGNNAKDPRGTYQCQ 171
>pdb|2EDF|A Chain A, Solution Structure Of The Second Ig-Like
Domain(2826-2915) From Human Obscurin
Length = 103
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 11/74 (14%)
Query: 23 VDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSD---------EVLVLDRVQREDAGM 73
V G +EL C +S R + WLKD +R++ +LV+ +DAG
Sbjct: 20 VAPGEDVELRCELS--RAGTPVHWLKDRKAIRKSQKYDVVCEGTMAMLVIRGASLKDAGE 77
Query: 74 YQCHVSADDDSAQM 87
Y C V A +A +
Sbjct: 78 YTCEVEASKSTASL 91
Score = 32.0 bits (71), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 11/69 (15%)
Query: 108 VDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSD---------EVLVLDRVQREDAGM 158
V G +EL C +S R + WLKD +R++ +LV+ +DAG
Sbjct: 20 VAPGEDVELRCELS--RAGTPVHWLKDRKAIRKSQKYDVVCEGTMAMLVIRGASLKDAGE 77
Query: 159 YQCHIEDGK 167
Y C +E K
Sbjct: 78 YTCEVEASK 86
>pdb|1RZI|A Chain A, Crystal Structure Of Human Anti-Hiv-1 Gp120-Reactive
Antibody 47e Fab
pdb|1RZI|C Chain C, Crystal Structure Of Human Anti-Hiv-1 Gp120-Reactive
Antibody 47e Fab
pdb|1RZI|E Chain E, Crystal Structure Of Human Anti-Hiv-1 Gp120-Reactive
Antibody 47e Fab
pdb|1RZI|G Chain G, Crystal Structure Of Human Anti-Hiv-1 Gp120-Reactive
Antibody 47e Fab
pdb|1RZI|I Chain I, Crystal Structure Of Human Anti-Hiv-1 Gp120-Reactive
Antibody 47e Fab
pdb|1RZI|K Chain K, Crystal Structure Of Human Anti-Hiv-1 Gp120-Reactive
Antibody 47e Fab
pdb|1RZI|M Chain M, Crystal Structure Of Human Anti-Hiv-1 Gp120-Reactive
Antibody 47e Fab
pdb|1RZI|O Chain O, Crystal Structure Of Human Anti-Hiv-1 Gp120-Reactive
Antibody 47e Fab
Length = 212
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 35/89 (39%), Gaps = 22/89 (24%)
Query: 13 IEMSPSGQVVVDVGHRIELHCRVS-----------------PKRLSSAKAWLKDGLVLR- 54
I+M+ S + VG R+ + CR S PK L A + L+ G+ R
Sbjct: 2 IQMTQSPSLSASVGDRVTITCRASQSISSYLNWYQQKPGKVPKLLIYAASSLQSGVPSRF 61
Query: 55 ----RNSDEVLVLDRVQREDAGMYQCHVS 79
+D L + +Q ED Y C S
Sbjct: 62 SGSGSGTDFTLTISSLQPEDFATYYCQQS 90
>pdb|1EVT|C Chain C, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
pdb|1EVT|D Chain D, Crystal Structure Of Fgf1 In Complex With The
Extracellular Ligand Binding Domain Of Fgf Receptor 1
(Fgfr1)
Length = 225
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 5/70 (7%)
Query: 234 VKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRI-----QRIGSSLSISHVEESDSGV 288
V ++V C + G P PT++W K + RI + S+ + V SD G
Sbjct: 28 VPAAKTVKFKCPSSGTPNPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSVVPSDKGN 87
Query: 289 WNCVANNSEG 298
+ C+ N G
Sbjct: 88 YTCIVENEYG 97
>pdb|3OZ9|L Chain L, Crystal Structure Of Anti-Gp41 Fab Nc-1
Length = 211
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 40/101 (39%), Gaps = 8/101 (7%)
Query: 87 MSAQVILGGELVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSD--- 143
MSA + GE + + S V H + SPK L + + L G+ R +
Sbjct: 11 MSASL---GEEITLTCSASSSVSYMHWYQQKSGTSPKLLIYSTSNLASGVPSRFSGSGSG 67
Query: 144 --EVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVD 182
L + V+ EDA Y CH G Y +L I + D
Sbjct: 68 TFYSLTISSVEAEDAADYYCHQWSGFYTFGGGTKLEIQRAD 108
>pdb|3R4D|A Chain A, Crystal Structure Of Mouse Coronavirus Receptor-Binding
Domain Complexed With Its Murine Receptor
pdb|3R4D|C Chain C, Crystal Structure Of Mouse Coronavirus Receptor-Binding
Domain Complexed With Its Murine Receptor
Length = 208
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 10/80 (12%)
Query: 2 QLFIQVKSSLSIEMSPSGQVVV--DVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDE 59
Q F+QV ++ E+ + D+G I+ +S L + + L +N +
Sbjct: 112 QPFLQVTNTTVKELDSVTLTCLSNDIGANIQW-------LFNSQSLQLTERMTLSQN-NS 163
Query: 60 VLVLDRVQREDAGMYQCHVS 79
+L +D ++REDAG YQC +S
Sbjct: 164 ILRIDPIKREDAGEYQCEIS 183
Score = 32.3 bits (72), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 125 LSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIED 165
+S L + + L +N + +L +D ++REDAG YQC I +
Sbjct: 145 FNSQSLQLTERMTLSQN-NSILRIDPIKREDAGEYQCEISN 184
>pdb|1L6Z|A Chain A, Crystal Structure Of Murine Ceacam1a[1,4]: A Coronavirus
Receptor And Cell Adhesion Molecule In The Cea Family
Length = 216
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 10/80 (12%)
Query: 2 QLFIQVKSSLSIEMSPSGQVVV--DVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDE 59
Q F+QV ++ E+ + D+G I+ +S L + + L +N +
Sbjct: 112 QPFLQVTNTTVKELDSVTLTCLSNDIGANIQW-------LFNSQSLQLTERMTLSQN-NS 163
Query: 60 VLVLDRVQREDAGMYQCHVS 79
+L +D ++REDAG YQC +S
Sbjct: 164 ILRIDPIKREDAGEYQCEIS 183
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 125 LSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIED 165
+S L + + L +N + +L +D ++REDAG YQC I +
Sbjct: 145 FNSQSLQLTERMTLSQN-NSILRIDPIKREDAGEYQCEISN 184
>pdb|2UV3|A Chain A, Structure Of The Signal-Regulatory Protein (Sirp) Alpha
Domain That Binds Cd47.
pdb|2UV3|B Chain B, Structure Of The Signal-Regulatory Protein (Sirp) Alpha
Domain That Binds Cd47.
pdb|2JJS|A Chain A, Structure Of Human Cd47 In Complex With Human Signal
Regulatory Protein (sirp) Alpha
pdb|2JJS|B Chain B, Structure Of Human Cd47 In Complex With Human Signal
Regulatory Protein (sirp) Alpha
pdb|2JJT|A Chain A, Structure Of Human Cd47 In Complex With Human Signal
Regulatory Protein (Sirp) Alpha
pdb|2JJT|B Chain B, Structure Of Human Cd47 In Complex With Human Signal
Regulatory Protein (Sirp) Alpha
Length = 126
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 41/88 (46%), Gaps = 19/88 (21%)
Query: 224 KMFEKHRILNVKKDESVILPCSAQG-NPLPTIKWYKQDSP------------------VE 264
++ + + ++V ES IL C+ P+ I+W++ P V
Sbjct: 5 QVIQPDKSVSVAAGESAILHCTVTSLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVS 64
Query: 265 ESDRIQRIGSSLSISHVEESDSGVWNCV 292
ES + + + S+SIS++ +D+G + CV
Sbjct: 65 ESTKRENMDFSISISNITPADAGTYYCV 92
>pdb|4HWU|A Chain A, Crystal Structure Of The Ig-C2 Type 1 Domain From Mouse
Fibroblast Growth Factor Receptor 2 (Fgfr2)
[nysgrc-005912]
pdb|4HWU|B Chain B, Crystal Structure Of The Ig-C2 Type 1 Domain From Mouse
Fibroblast Growth Factor Receptor 2 (Fgfr2)
[nysgrc-005912]
Length = 95
Score = 32.7 bits (73), Expect = 0.34, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 8/68 (11%)
Query: 22 VVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQRE-----DAGMYQC 76
VV G +EL C + + ++ +W KDG+ L N+ VL+ + +Q + D+G+Y C
Sbjct: 12 VVAPGESLELQCML---KDAAVISWTKDGVHLGPNNRTVLIGEYLQIKGATPRDSGLYAC 68
Query: 77 HVSADDDS 84
+ DS
Sbjct: 69 TAARTVDS 76
Score = 31.2 bits (69), Expect = 0.90, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 8/60 (13%)
Query: 107 VVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQRE-----DAGMYQC 161
VV G +EL C + + ++ +W KDG+ L N+ VL+ + +Q + D+G+Y C
Sbjct: 12 VVAPGESLELQCML---KDAAVISWTKDGVHLGPNNRTVLIGEYLQIKGATPRDSGLYAC 68
>pdb|4FNL|L Chain L, Crystal Structure Of Broadly Neutralizing Antibody C05
pdb|4FNL|M Chain M, Crystal Structure Of Broadly Neutralizing Antibody C05
pdb|4FP8|L Chain L, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin, Ha1 Subunit
pdb|4FP8|M Chain M, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin, Ha1 Subunit
pdb|4FP8|N Chain N, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin, Ha1 Subunit
pdb|4FP8|O Chain O, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin, Ha1 Subunit
pdb|4FQR|BB Chain b, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
pdb|4FQR|DD Chain d, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
pdb|4FQR|FF Chain f, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
pdb|4FQR|HH Chain h, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
pdb|4FQR|JJ Chain j, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
pdb|4FQR|LL Chain l, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
pdb|4FQR|NN Chain n, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
pdb|4FQR|PP Chain p, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
pdb|4FQR|RR Chain r, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
pdb|4FQR|TT Chain t, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
pdb|4FQR|VV Chain v, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
pdb|4FQR|XX Chain x, Crystal Structure Of Broadly Neutralizing Antibody C05
Bound To H3 Influenza Hemagglutinin
Length = 214
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 37/99 (37%), Gaps = 22/99 (22%)
Query: 102 SSNQVVVDVGHRIELHCRVS-----------------PKRLSSAKAWLKDGLVLR----- 139
S + + VG R+ L C+ S PK L + L+ G+ R
Sbjct: 7 SPSSLSASVGDRVTLTCQASQDIRKFLNWYQQKPGKGPKLLIYDASNLQRGVPSRFSGGG 66
Query: 140 RNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELII 178
+D L++ +Q ED G Y C DG G ++
Sbjct: 67 SGTDFTLIISSLQPEDVGTYYCQQYDGLPFTFGGGTKVV 105
>pdb|1WWB|X Chain X, Ligand Binding Domain Of Human Trkb Receptor
Length = 103
Score = 32.3 bits (72), Expect = 0.40, Method: Composition-based stats.
Identities = 17/77 (22%), Positives = 34/77 (44%), Gaps = 9/77 (11%)
Query: 237 DESVILPCSAQGNPLPTIKWYKQDSPVEESDRI---------QRIGSSLSISHVEESDSG 287
D +P + +GNP P ++W+ + + ES I L + + ++G
Sbjct: 16 DHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNG 75
Query: 288 VWNCVANNSEGQDKMQL 304
+ +A N G+D+ Q+
Sbjct: 76 DYTLIAKNEYGKDEKQI 92
>pdb|1HCF|X Chain X, Crystal Structure Of Trkb-D5 Bound To Neurotrophin-45
pdb|1HCF|Y Chain Y, Crystal Structure Of Trkb-D5 Bound To Neurotrophin-45
Length = 101
Score = 32.3 bits (72), Expect = 0.40, Method: Composition-based stats.
Identities = 17/77 (22%), Positives = 34/77 (44%), Gaps = 9/77 (11%)
Query: 237 DESVILPCSAQGNPLPTIKWYKQDSPVEESDRI---------QRIGSSLSISHVEESDSG 287
D +P + +GNP P ++W+ + + ES I L + + ++G
Sbjct: 16 DHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNG 75
Query: 288 VWNCVANNSEGQDKMQL 304
+ +A N G+D+ Q+
Sbjct: 76 DYTLIAKNEYGKDEKQI 92
>pdb|2WNG|A Chain A, Complete Extracellular Structure Of Human Signal
Regulatory Protein (Sirp) Alpha
Length = 327
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 41/88 (46%), Gaps = 19/88 (21%)
Query: 224 KMFEKHRILNVKKDESVILPCSAQG-NPLPTIKWYKQDSP------------------VE 264
++ + + ++V ES IL C+ P+ I+W++ P V
Sbjct: 5 QVIQPDKSVSVAAGESAILHCTVTSLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVS 64
Query: 265 ESDRIQRIGSSLSISHVEESDSGVWNCV 292
ES + + + S+SIS++ +D+G + CV
Sbjct: 65 ESTKRENMDFSISISNITPADAGTYYCV 92
>pdb|2CR3|A Chain A, Solution Structure Of The First Ig-Like Domain Of Human
Fibroblast Growth Factor Receptor 1
Length = 99
Score = 32.0 bits (71), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 30/67 (44%)
Query: 253 TIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGK 312
+I W + + ES+R + G + + +DSG++ CV ++ G D + +
Sbjct: 33 SINWLRDGVQLAESNRTRITGEEVEVQDSVPADSGLYACVTSSPSGSDTTYFSVNVSDAL 92
Query: 313 YHMLSSG 319
SSG
Sbjct: 93 PSGPSSG 99
>pdb|3O4O|C Chain C, Crystal Structure Of An Interleukin-1 Receptor Complex
Length = 339
Score = 31.6 bits (70), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Query: 246 AQGNPLPTIKWYKQDS----PVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDK 301
A +P + W+K DS P EE R+ +L + + DSG + C N+ DK
Sbjct: 49 ASVSPRINLTWHKNDSARTVPGEEETRMWAQDGALWLLPALQEDSGTYVCTTRNASYCDK 108
Query: 302 MQL 304
M +
Sbjct: 109 MSI 111
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 12/65 (18%)
Query: 131 WLKDGLVLRRNSDEVL--------VLDRVQREDAGMYQCHI----EDGKYHMLSSGELII 178
W KD L+L +++++ L ++ V EDAG Y+C + E +Y++ S EL I
Sbjct: 159 WYKDSLLLDKDNEKFLSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRI 218
Query: 179 HQVDE 183
+ E
Sbjct: 219 KKKKE 223
>pdb|1G1C|A Chain A, I1 Domain From Titin
pdb|1G1C|B Chain B, I1 Domain From Titin
Length = 99
Score = 31.6 bits (70), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 23/50 (46%)
Query: 220 LSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRI 269
+ A K+FE+ + V + G P P +WYK +E SDRI
Sbjct: 3 MEAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRI 52
>pdb|3EOY|G Chain G, Structure Of Reovirus Sigma1 In Complex With Its Receptor
Junctional Adhesion Molecule-A
pdb|3EOY|H Chain H, Structure Of Reovirus Sigma1 In Complex With Its Receptor
Junctional Adhesion Molecule-A
pdb|3EOY|I Chain I, Structure Of Reovirus Sigma1 In Complex With Its Receptor
Junctional Adhesion Molecule-A
pdb|3EOY|J Chain J, Structure Of Reovirus Sigma1 In Complex With Its Receptor
Junctional Adhesion Molecule-A
pdb|3EOY|K Chain K, Structure Of Reovirus Sigma1 In Complex With Its Receptor
Junctional Adhesion Molecule-A
pdb|3EOY|L Chain L, Structure Of Reovirus Sigma1 In Complex With Its Receptor
Junctional Adhesion Molecule-A
Length = 104
Score = 31.2 bits (69), Expect = 0.97, Method: Composition-based stats.
Identities = 18/91 (19%), Positives = 38/91 (41%), Gaps = 16/91 (17%)
Query: 232 LNVKKDESVILPCSAQGNPLPTIKW------------YKQDSPVEESDRIQRIGSSLSIS 279
+ + ++ V L C+ G P ++W Y DR+ + + ++
Sbjct: 13 VRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFK 72
Query: 280 HVEESDSGVWNCVAN----NSEGQDKMQLFI 306
V D+G + C+ + NS G+ K++L +
Sbjct: 73 SVTREDTGTYTCMVSEEGGNSYGEVKVKLIV 103
>pdb|1XMW|A Chain A, Cd3 Epsilon And Delta Ectodomain Fragment Complex In
Single- Chain Construct
Length = 178
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Query: 26 GHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVL-DRVQREDAGMYQCHVSADDDS 84
G +EL C P W K+G L + D+ LVL D + ED+G Y C+ A + +
Sbjct: 14 GTSVELTC---PLDSDENLKWEKNGQELPQKHDKHLVLQDFSEVEDSGYYVCYTPASNKN 70
Query: 85 AQMSAQVILG 94
+ + +G
Sbjct: 71 TYLYLKARVG 80
>pdb|3MTR|A Chain A, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam
pdb|3MTR|B Chain B, Crystal Structure Of The Ig5-Fn1 Tandem Of Human Ncam
Length = 215
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 6/73 (8%)
Query: 240 VILPCSAQGNPLPTIKWYKQDSPVEESDRIQ-RIGSSLSISHVE-----ESDSGVWNCVA 293
V + C P TI W++ + S+ +I ++ S S++E E+D G +NC A
Sbjct: 36 VNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTA 95
Query: 294 NNSEGQDKMQLFI 306
N GQ+ ++ +
Sbjct: 96 VNRIGQESLEFIL 108
>pdb|2Y23|A Chain A, Crystal Structure Of The Myomesin Domains My9-My11
Length = 312
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 31/161 (19%), Positives = 67/161 (41%), Gaps = 24/161 (14%)
Query: 146 LVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLS 205
+ ++++Q ED G Y ++DGK S+ L+ + + +Q + + G +
Sbjct: 168 MFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVE 227
Query: 206 VNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDS--PV 263
++ N L K ++ N+KK+ ++ WYK + V
Sbjct: 228 YLSWEVTGECNVLL--------KCKVANIKKETHIV--------------WYKDEREISV 265
Query: 264 EESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQL 304
+E + +L I+ + D+G++ + + G+DK +L
Sbjct: 266 DEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRL 306
>pdb|3R08|E Chain E, Crystal Structure Of Mouse Cd3epsilon In Complex With
Antibody 2c11 Fab
Length = 82
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Query: 26 GHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVL-DRVQREDAGMYQCHVSADDDS 84
G +EL C P W K+G L + D+ LVL D + ED+G Y C+ A + +
Sbjct: 14 GTSVELTC---PLDSDENLKWEKNGQELPQKHDKHLVLQDFSEVEDSGYYVCYTPASNKN 70
Query: 85 AQM 87
+
Sbjct: 71 TYL 73
>pdb|2ZAI|A Chain A, Crystal Structure Of The Soluble Domain Of Stt3 From P.
Furiosus
pdb|2ZAI|B Chain B, Crystal Structure Of The Soluble Domain Of Stt3 From P.
Furiosus
pdb|2ZAI|C Chain C, Crystal Structure Of The Soluble Domain Of Stt3 From P.
Furiosus
pdb|2ZAI|D Chain D, Crystal Structure Of The Soluble Domain Of Stt3 From P.
Furiosus
Length = 497
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 9/74 (12%)
Query: 246 AQGNPLPTI-----KWYKQDSPVEESDRI--QRIGSSLSISHVEESDSGVWNCVANNSEG 298
A G P TI K + PV ES + R + I +EE+ +G W V N + G
Sbjct: 221 AFGVPASTIPGFSDKLFSNFEPVYESGNVIVYRF-TPFGIYKIEENINGTWKQVYNLTPG 279
Query: 299 QDKMQLFIQYAHGK 312
+ +++L+I A G+
Sbjct: 280 KHELKLYIS-AFGR 292
>pdb|3RBS|A Chain A, Crystal Structure Of The Myomesin Domains 10 And 11
Length = 207
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 31/161 (19%), Positives = 67/161 (41%), Gaps = 24/161 (14%)
Query: 146 LVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLS 205
+ ++++Q ED G Y ++DGK S+ L+ + + +Q + + G +
Sbjct: 63 MFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVE 122
Query: 206 VNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSP--V 263
LS + + K ++ N+KK+ ++ WYK + V
Sbjct: 123 Y----LSW----EVTGECNVLLKCKVANIKKETHIV--------------WYKDEREISV 160
Query: 264 EESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQL 304
+E + +L I+ + D+G++ + + G+DK +L
Sbjct: 161 DEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRL 201
>pdb|2ZAG|A Chain A, Crystal Structure Of The Semet-Substituted Soluble Domain
Of Stt3 From P. Furiosus
pdb|2ZAG|B Chain B, Crystal Structure Of The Semet-Substituted Soluble Domain
Of Stt3 From P. Furiosus
pdb|2ZAG|C Chain C, Crystal Structure Of The Semet-Substituted Soluble Domain
Of Stt3 From P. Furiosus
pdb|2ZAG|D Chain D, Crystal Structure Of The Semet-Substituted Soluble Domain
Of Stt3 From P. Furiosus
Length = 497
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 9/74 (12%)
Query: 246 AQGNPLPTI-----KWYKQDSPVEESDRI--QRIGSSLSISHVEESDSGVWNCVANNSEG 298
A G P TI K + PV ES + R + I +EE+ +G W V N + G
Sbjct: 221 AFGVPASTIPGFSDKLFSNFEPVYESGNVIVYRF-TPFGIYKIEENINGTWKQVYNLTPG 279
Query: 299 QDKMQLFIQYAHGK 312
+ +++L+I A G+
Sbjct: 280 KHELKLYIS-AFGR 292
>pdb|1YC8|A Chain A, Caban33- Y37vE44GR45L TRIPLE MUTANT
pdb|1YC8|B Chain B, Caban33- Y37vE44GR45L TRIPLE MUTANT
pdb|1YZZ|A Chain A, Humanized Caban33 At Room Temperature
pdb|1YZZ|B Chain B, Humanized Caban33 At Room Temperature
Length = 124
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 146 LVLDRVQREDAGMYQCHIEDG 166
L ++ +QRED GMY C I+ G
Sbjct: 80 LQMNSLQREDTGMYYCQIQCG 100
>pdb|1YC7|A Chain A, Caban33 Vhh Fragment Against Vsg
pdb|1YC7|B Chain B, Caban33 Vhh Fragment Against Vsg
Length = 124
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 146 LVLDRVQREDAGMYQCHIEDG 166
L ++ +QRED GMY C I+ G
Sbjct: 80 LQMNSLQREDTGMYYCQIQCG 100
>pdb|3OQ3|B Chain B, Structural Basis Of Type-I Interferon Sequestration By A
Poxvirus Decoy Receptor
Length = 329
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 40/195 (20%), Positives = 69/195 (35%), Gaps = 28/195 (14%)
Query: 27 HRIELHCRVSPKRLSSAKAWLKDGLVL------RRNSDEVLVLDRVQREDAGMYQCHVSA 80
+ I+L+C + + + W K+ L S + L++ + ED+G Y C+V
Sbjct: 144 YGIDLYCGILYAKHYNNITWYKNNQELIIDGTKYSQSGQNLIIHNPELEDSGRYDCYVHY 203
Query: 81 DDDSAQMSAQVILGGELVEIASSN---------QVVVDVGHRIELHCRVSPKRLSSAKAW 131
DD + V L I S + ++ V +G + C S
Sbjct: 204 DDVRIKNDIVVSRCKILTVIPSQDHRFKLILDPKINVTIGEPANITCTA-----VSTSLL 258
Query: 132 LKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQ 191
+ D L+ N ++ D G+Y G ++ L V E +Y
Sbjct: 259 VDDVLIDWENPSGWII-----GLDFGVYSILTSSGG---ITEATLYFENVTEEYIGNTYT 310
Query: 192 CRGVNKLTGASLLSV 206
CRG N +L +
Sbjct: 311 CRGHNYYFDKTLTTT 325
>pdb|3LEY|L Chain L, 2f5 Epitope Scaffold Elicited Anti-Hiv-1 Monoclonal
Antibody 6a7 In Complex With Hiv-1 Gp41
Length = 219
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 10/85 (11%)
Query: 87 MSAQVILGGELVEIASSNQVVVDVGHRIELHCRV-----SPKRLSSAKAWLKDGLVLR-- 139
+S V LG S+Q ++D + L+ + SPKRL + L G+ R
Sbjct: 9 LSLSVTLGQPASISCKSSQSLLDSDGKTYLNWLLQRPGQSPKRLIYLVSKLASGVPDRFT 68
Query: 140 ---RNSDEVLVLDRVQREDAGMYQC 161
+D L ++RV+ ED G+Y C
Sbjct: 69 GSGSGTDFTLKINRVEAEDLGIYYC 93
>pdb|2CKN|A Chain A, Nmr Structure Of The First Ig Module Of Mouse Fgfr1
Length = 95
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/57 (22%), Positives = 27/57 (47%)
Query: 253 TIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYA 309
+I W + + ES+R + G + + +DSG++ CV ++ G D + +
Sbjct: 39 SINWLRDGVQLVESNRTRITGEEVEVRDSIPADSGLYACVTSSPSGSDTTYFSVNVS 95
>pdb|1J1O|L Chain L, Crystal Structure Of Hyhel-10 Fv Mutant Ly50f Complexed
With Hen Egg White Lysozyme
Length = 107
Score = 29.3 bits (64), Expect = 3.9, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 36/85 (42%), Gaps = 22/85 (25%)
Query: 232 LNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRI------QRIGS----------- 274
L+V SV L C A + + WY+Q S ES R+ Q I
Sbjct: 11 LSVTPGNSVSLSCRASQSIGNNLHWYQQKS--HESPRLLIKFASQSISGIPSRFSGSGSG 68
Query: 275 ---SLSISHVEESDSGVWNCVANNS 296
+LSI+ VE D G++ C +NS
Sbjct: 69 TDFTLSINSVETEDFGMYFCQQSNS 93
>pdb|3A67|L Chain L, Crystal Structure Of Hyhel-10 Fv Mutant Ln31d Complexed
With White Lysozyme
Length = 107
Score = 29.3 bits (64), Expect = 4.1, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 36/85 (42%), Gaps = 22/85 (25%)
Query: 232 LNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRI------QRIGS----------- 274
L+V SV L C A + + WY+Q S ES R+ Q I
Sbjct: 11 LSVTPGNSVSLSCRASQSIGDNLHWYQQKS--HESPRLLIKYASQSISGIPSRFSGSGSG 68
Query: 275 ---SLSISHVEESDSGVWNCVANNS 296
+LSI+ VE D G++ C +NS
Sbjct: 69 TDFTLSINSVETEDFGMYFCQQSNS 93
>pdb|1C08|A Chain A, Crystal Structure Of Hyhel-10 Fv-Hen Lysozyme Complex
pdb|1IC4|L Chain L, Crystal Structure Of Hyhel-10 Fv Mutant(Hd32a)-Hen
Lysozyme Complex
pdb|1IC5|L Chain L, Crystal Structure Of Hyhel-10 Fv Mutant(Hd99a)-Hen
Lysozyme Complex
pdb|1IC7|L Chain L, Crystal Structure Of Hyhel-10 Fv Mutant(Hd32a99a)-Hen
Lysozyme Complex
pdb|1UA6|L Chain L, Crystal Structure Of Hyhel-10 Fv Mutant Sfsf Complexed
With Hen Egg White Lysozyme Complex
pdb|1UAC|L Chain L, Crystal Structure Of Hyhel-10 Fv Mutant Sfsf Complexed
With Turkey White Lysozyme
pdb|2DQC|L Chain L, Crystal Structure Of Hyhel-10 Fv Mutant(Hy33f) Complexed
With Hen Egg Lysozyme
pdb|2DQD|L Chain L, Crystal Structure Of Hyhel-10 Fv Mutant (Hy50f) Complexed
With Hen Egg Lysozyme
pdb|2DQE|L Chain L, Crystal Structure Of Hyhel-10 Fv Mutant (Hy53a) Complexed
With Hen Egg Lysozyme
pdb|2DQF|A Chain A, Crystal Structure Of Hyhel-10 Fv Mutant (Y33ay53a)
Complexed With Hen Egg Lysozyme
pdb|2DQF|D Chain D, Crystal Structure Of Hyhel-10 Fv Mutant (Y33ay53a)
Complexed With Hen Egg Lysozyme
pdb|2DQG|L Chain L, Crystal Structure Of Hyhel-10 Fv Mutant (Hy53f) Complexed
With Hen Egg Lysozyme
pdb|2DQH|L Chain L, Crystal Structure Of Hyhel-10 Fv Mutant (Hy58a) Complexed
With Hen Egg Lysozyme
pdb|2DQJ|L Chain L, Crystal Structure Of Hyhel-10 Fv (Wild-Type) Complexed
With Hen Egg Lysozyme At 1.8a Resolution
Length = 107
Score = 28.9 bits (63), Expect = 4.3, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 36/85 (42%), Gaps = 22/85 (25%)
Query: 232 LNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRI------QRIGS----------- 274
L+V SV L C A + + WY+Q S ES R+ Q I
Sbjct: 11 LSVTPGNSVSLSCRASQSIGNNLHWYQQKS--HESPRLLIKYASQSISGIPSRFSGSGSG 68
Query: 275 ---SLSISHVEESDSGVWNCVANNS 296
+LSI+ VE D G++ C +NS
Sbjct: 69 TDFTLSINSVETEDFGMYFCQQSNS 93
>pdb|1WIO|A Chain A, Structure Of T-Cell Surface Glycoprotein Cd4, Tetragonal
Crystal Form
pdb|1WIO|B Chain B, Structure Of T-Cell Surface Glycoprotein Cd4, Tetragonal
Crystal Form
pdb|1WIP|A Chain A, Structure Of T-Cell Surface Glycoprotein Cd4, Monoclinic
Crystal Form
pdb|1WIP|B Chain B, Structure Of T-Cell Surface Glycoprotein Cd4, Monoclinic
Crystal Form
pdb|1WIQ|A Chain A, Structure Of T-Cell Surface Glycoprotein Cd4, Trigonal
Crystal Form
pdb|1WIQ|B Chain B, Structure Of T-Cell Surface Glycoprotein Cd4, Trigonal
Crystal Form
Length = 363
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 273 GSSLSISHVEESDSGVWNCV 292
G +LS+S +E DSG W C
Sbjct: 141 GKTLSVSQLELQDSGTWTCT 160
>pdb|2BNU|A Chain A, Structural And Kinetic Basis For Heightened Immunogenicity
Of T Cell Vaccines
Length = 203
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 40/94 (42%), Gaps = 20/94 (21%)
Query: 232 LNVKKDESVILPCSAQGNPLPTIKWYKQDSP--------VEESDRIQRIG---------- 273
L+V + E+++L CS + + ++W++QD ++ S R Q G
Sbjct: 10 LSVPEGENLVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSS 69
Query: 274 --SSLSISHVEESDSGVWNCVANNSEGQDKMQLF 305
S+L I+ + DS + C + G + F
Sbjct: 70 GRSTLYIAASQPGDSATYLCAVRPTSGGSYIPTF 103
>pdb|3E3C|A Chain A, Structure Of Grlr-Lipid Complex
pdb|3E3C|B Chain B, Structure Of Grlr-Lipid Complex
Length = 118
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 27/48 (56%)
Query: 196 NKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILP 243
N +TG + SV +G LS E+ L +E +LN+++D +++P
Sbjct: 36 NMITGGDIASVYQGVLSEDEDIILHVHRYNYEIPSVLNIEQDYQLVIP 83
>pdb|3T0E|E Chain E, Crystal Structure Of A Complete Ternary Complex Of T Cell
Receptor, Peptide-Mhc And Cd4
Length = 373
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 273 GSSLSISHVEESDSGVWNCV 292
G +LS+S +E DSG W C
Sbjct: 141 GKTLSVSQLELQDSGTWTCT 160
>pdb|3S35|X Chain X, Structural Basis For The Function Of Two Anti-Vegf
Receptor Antibodies
pdb|3S36|X Chain X, Structural Basis For The Function Of Two Anti-Vegf
Receptor Antibodies
pdb|3S37|X Chain X, Structural Basis For The Function Of Two Anti-Vegf
Receptor Antibodies
Length = 122
Score = 28.9 bits (63), Expect = 4.6, Method: Composition-based stats.
Identities = 15/65 (23%), Positives = 29/65 (44%)
Query: 255 KWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKYH 314
K +D + +++ S+L+I V SD G++ C A++ K F++ +
Sbjct: 55 KLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFV 114
Query: 315 MLSSG 319
SG
Sbjct: 115 AFGSG 119
>pdb|2NXY|B Chain B, Hiv-1 Gp120 Envelope Glycoprotein(S334a) Complexed With
Cd4 And Antibody 17b
pdb|2NXZ|B Chain B, Hiv-1 Gp120 Envelope Glycoprotein (t257s, S334a, S375w)
Complexed With Cd4 And Antibody 17b
pdb|2NY0|B Chain B, Hiv-1 Gp120 Envelope Glycoprotein (M95w, W96c, T257s,
V275c, S334a, S375w, A433m) Complexed With Cd4 And
Antibody 17b
pdb|2NY1|B Chain B, Hiv-1 Gp120 Envelope Glycoprotein (I109c, T257s, S334a,
S375w, Q428c) Complexed With Cd4 And Antibody 17b
pdb|2NY2|B Chain B, Hiv-1 Gp120 Envelope Glycoprotein (T123c, T257s, S334a,
S375w, G431c) Complexed With Cd4 And Antibody 17b
pdb|2NY3|B Chain B, Hiv-1 Gp120 Envelope Glycoprotein (K231c, T257s, E267c,
S334a, S375w) Complexed With Cd4 And Antibody 17b
pdb|2NY4|B Chain B, Hiv-1 Gp120 Envelope Glycoprotein (K231c, T257s, E268c,
S334a, S375w) Complexed With Cd4 And Antibody 17b
pdb|2NY5|C Chain C, Hiv-1 Gp120 Envelope Glycoprotein (m95w, W96c, I109c,
T257s, V275c, S334a, S375w, Q428c, A433m) Complexed With
Cd4 And Antibody 17b
pdb|2NY6|B Chain B, Hiv-1 Gp120 Envelope Glycoprotein (m95w, W96c, I109c,
T123c, T257s, V275c,s334a, S375w, Q428c, G431c)
Complexed With Cd4 And Antibody 17b
pdb|3JWD|C Chain C, Structure Of Hiv-1 Gp120 With Gp41-Interactive Region:
Layered Architecture And Basis Of Conformational
Mobility
pdb|3JWD|D Chain D, Structure Of Hiv-1 Gp120 With Gp41-Interactive Region:
Layered Architecture And Basis Of Conformational
Mobility
pdb|3JWO|C Chain C, Structure Of Hiv-1 Gp120 With Gp41-Interactive Region:
Layered Architecture And Basis Of Conformational
Mobility
Length = 184
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 273 GSSLSISHVEESDSGVWNCV 292
G +LS+S +E DSG W C
Sbjct: 142 GKTLSVSQLELQDSGTWTCT 161
>pdb|3LQA|C Chain C, Crystal Structure Of Clade C Gp120 In Complex With Scd4
And
Length = 192
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 273 GSSLSISHVEESDSGVWNCV 292
G +LS+S +E DSG W C
Sbjct: 141 GKTLSVSQLELQDSGTWTCT 160
>pdb|2B4C|C Chain C, Crystal Structure Of Hiv-1 Jr-fl Gp120 Core Protein
Containing The Third Variable Region (v3) Complexed With
Cd4 And The X5 Antibody
pdb|2QAD|B Chain B, Structure Of Tyrosine-Sulfated 412d Antibody Complexed
With Hiv-1 Yu2 Gp120 And Cd4
pdb|2QAD|F Chain F, Structure Of Tyrosine-Sulfated 412d Antibody Complexed
With Hiv-1 Yu2 Gp120 And Cd4
Length = 181
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 273 GSSLSISHVEESDSGVWNCV 292
G +LS+S +E DSG W C
Sbjct: 141 GKTLSVSQLELQDSGTWTCT 160
>pdb|3O2D|A Chain A, Crystal Structure Of Hiv-1 Primary Receptor Cd4 In Complex
With A Potent Antiviral Antibody
Length = 188
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 273 GSSLSISHVEESDSGVWNCV 292
G +LS+S +E DSG W C
Sbjct: 141 GKTLSVSQLELQDSGTWTCT 160
>pdb|2DQI|L Chain L, Crystal Structure Of Hyhel-10 Fv Mutant (Ly50a) Complexed
With Hen Egg Lysozyme
Length = 107
Score = 28.9 bits (63), Expect = 4.9, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 36/85 (42%), Gaps = 22/85 (25%)
Query: 232 LNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRI------QRIGS----------- 274
L+V SV L C A + + WY+Q S ES R+ Q I
Sbjct: 11 LSVTPGNSVSLSCRASQSIGNNLHWYQQKS--HESPRLLIKAASQSISGIPSRFSGSGSG 68
Query: 275 ---SLSISHVEESDSGVWNCVANNS 296
+LSI+ VE D G++ C +NS
Sbjct: 69 TDFTLSINSVETEDFGMYFCQQSNS 93
>pdb|3CD4|A Chain A, Refinement And Analysis Of The First Two Domains Of Human
Cd4
Length = 182
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 273 GSSLSISHVEESDSGVWNCV 292
G +LS+S +E DSG W C
Sbjct: 141 GKTLSVSQLELQDSGTWTCT 160
>pdb|1GC1|C Chain C, Hiv-1 Gp120 Core Complexed With Cd4 And A Neutralizing
Human Antibody
pdb|1G9M|C Chain C, Hiv-1 Hxbc2 Gp120 Envelope Glycoprotein Complexed With Cd4
And Induced Neutralizing Antibody 17b
pdb|1G9N|C Chain C, Hiv-1 Yu2 Gp120 Envelope Glycoprotein Complexed With Cd4
And Induced Neutralizing Antibody 17b
pdb|1RZJ|C Chain C, Hiv-1 Hxbc2 Gp120 Envelope Glycoprotein Complexed With Cd4
And Induced Neutralizing Antibody 17b
pdb|1RZK|C Chain C, Hiv-1 Yu2 Gp120 Envelope Glycoprotein Complexed With Cd4
And Induced Neutralizing Antibody 17b
Length = 185
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 273 GSSLSISHVEESDSGVWNCV 292
G +LS+S +E DSG W C
Sbjct: 141 GKTLSVSQLELQDSGTWTCT 160
>pdb|2BNQ|D Chain D, Structural And Kinetic Basis For Heightened Immunogenicity
Of T Cell Vaccines
pdb|2BNR|D Chain D, Structural And Kinetic Basis For Heightened Immunogenicity
Of T Cell Vaccines
Length = 203
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 40/94 (42%), Gaps = 20/94 (21%)
Query: 232 LNVKKDESVILPCSAQGNPLPTIKWYKQDSP--------VEESDRIQRIG---------- 273
L+V + E+++L CS + + ++W++QD ++ S R Q G
Sbjct: 10 LSVPEGENLVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSS 69
Query: 274 --SSLSISHVEESDSGVWNCVANNSEGQDKMQLF 305
S+L I+ + DS + C + G + F
Sbjct: 70 GRSTLYIAASQPGDSATYLCAVRPTSGGSYIPTF 103
>pdb|1CDI|A Chain A, Structures Of An Hiv And Mhc Binding Fragment From Human
Cd4 As Refined In Two Crystal Lattices
Length = 179
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 273 GSSLSISHVEESDSGVWNCV 292
G +LS+S +E DSG W C
Sbjct: 142 GKTLSVSQLELQDSGTWTCT 161
>pdb|1CDY|A Chain A, Structure Of T-Cell Surface Glycoprotein Cd4 Mutant With
Gly 47 Replaced By Ser
Length = 178
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 273 GSSLSISHVEESDSGVWNCV 292
G +LS+S +E DSG W C
Sbjct: 141 GKTLSVSQLELQDSGTWTCT 160
>pdb|1QGC|4 Chain 4, Structure Of The Complex Of An Fab Fragment Of A
Neutralizing Antibody With Foot And Mouth Disease Virus
Length = 438
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 71/330 (21%), Positives = 125/330 (37%), Gaps = 70/330 (21%)
Query: 13 IEMSPSGQVVVDVGHRIELHCRVS---------------------PKRLSSAKAWLKDGL 51
+ SP+ + V +G R + CR S PK L + L+ G+
Sbjct: 4 LTQSPA-SLAVSLGQRATISCRASESVDSSGHSFMHWYQQKPGQPPKLLIYRASNLESGI 62
Query: 52 VLRRN-----SDEVLVLDRVQREDAGMYQCHVSAD-----DDSAQMSAQVILGGELVEI- 100
R + +D L +D V+ +D Y C S + ++ + V I
Sbjct: 63 PDRFSGSGSRTDFTLTIDPVEADDVATYYCQQSNEVPLTFGAGTKLDLKRADAAPTVSIF 122
Query: 101 -ASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMY 159
SS Q+ + PK ++ W DG R+N VL+ +D+
Sbjct: 123 PPSSEQLTSGGASVVCFLNNFYPKDIN--VKWKIDG-SERQNG----VLNSWTDQDS--- 172
Query: 160 QCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLL-SVNRG--RLSLTEN 216
+D Y M S+ L DE +R+ SY C +K + + ++ S NR + L E+
Sbjct: 173 ----KDSTYSMSSTLTLT---KDEYERHNSYTCEATHKTSTSPIVKSFNRNEXEVMLVES 225
Query: 217 KRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLP--TIKWYKQDSPVEESDRIQRIGS 274
L VK S+ L C+A G + W +Q +P + + + I S
Sbjct: 226 GGGL-------------VKPGGSLKLSCTASGFIFNRCAMSWVRQ-TPEKRLEWVATISS 271
Query: 275 SLSISHVEESDSGVWNCVANNSEGQDKMQL 304
+ ++ +S G + +N++ +Q+
Sbjct: 272 GGTYTYYPDSVKGRFTISRDNAKNTLYLQM 301
>pdb|1JL4|D Chain D, Crystal Structure Of The Human Cd4 N-Terminal Two Domain
Fragment Complexed To A Class Ii Mhc Molecule
pdb|1CDH|A Chain A, Structures Of An Hiv And Mhc Binding Fragment From Human
Cd4 As Refined In Two Crystal Lattices
pdb|1CDJ|A Chain A, Structure Of T-Cell Surface Glycoprotein Cd4
Length = 178
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 273 GSSLSISHVEESDSGVWNCV 292
G +LS+S +E DSG W C
Sbjct: 141 GKTLSVSQLELQDSGTWTCT 160
>pdb|1CDU|A Chain A, Structure Of T-Cell Surface Glycoprotein Cd4 Mutant With
Phe 43 Replaced By Val
Length = 178
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 273 GSSLSISHVEESDSGVWNCV 292
G +LS+S +E DSG W C
Sbjct: 141 GKTLSVSQLELQDSGTWTCT 160
>pdb|3S5L|G Chain G, Crystal Structure Of Cd4 Mutant Bound To Hla-Dr1
pdb|3S5L|H Chain H, Crystal Structure Of Cd4 Mutant Bound To Hla-Dr1
Length = 191
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 273 GSSLSISHVEESDSGVWNCVA 293
G +LS+S +E DSG W C
Sbjct: 145 GKTLSVSQLELQDSGTWTCTV 165
>pdb|2F54|D Chain D, Directed Evolution Of Human T Cell Receptor Cdr2 Residues
By Phage Display Dramatically Enhances Affinity For
Cognate Peptide-Mhc Without Increasing Apparent
Cross-Reactivity
pdb|2F54|K Chain K, Directed Evolution Of Human T Cell Receptor Cdr2 Residues
By Phage Display Dramatically Enhances Affinity For
Cognate Peptide-Mhc Without Increasing Apparent
Cross-Reactivity
Length = 206
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 40/94 (42%), Gaps = 20/94 (21%)
Query: 232 LNVKKDESVILPCSAQGNPLPTIKWYKQDSP--------VEESDRIQRIG---------- 273
L+V + E+++L CS + + ++W++QD ++ S R Q G
Sbjct: 11 LSVPEGENLVLNCSFTDSAIYNLQWFRQDPGGKLTSLLLIQSSQREQTSGRLNASLDKSA 70
Query: 274 --SSLSISHVEESDSGVWNCVANNSEGQDKMQLF 305
S+L I+ + DS + C + G + F
Sbjct: 71 GSSTLYIAASQPGDSATYLCAVRPTSGGSYIPTF 104
>pdb|1WWC|A Chain A, Nt3 Binding Domain Of Human Trkc Receptor
Length = 118
Score = 28.5 bits (62), Expect = 6.0, Method: Composition-based stats.
Identities = 25/103 (24%), Positives = 41/103 (39%), Gaps = 19/103 (18%)
Query: 222 AAKMFEKHRILNVKKDESVILPC---SAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSI 278
A ++ R++++++ E + C +GNP PT+ W P+ ES I
Sbjct: 2 ALTVYYPPRVVSLEEPELRLEHCIEFVVRGNPPPTLHWLHNGQPLRES----------KI 51
Query: 279 SHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGEL 321
HVE G SEG Y +G Y +++ L
Sbjct: 52 IHVEYYQEG------EISEGCLLFNKPTHYNNGNYTLIAKNPL 88
>pdb|3QQX|A Chain A, Reduced Native Intermediate Of The Multicopper Oxidase
Cueo
Length = 505
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 38 KRLSSAKAWLKDGLVLRRNSDEVLVLDR--VQREDAGMYQCHVSADDDSAQMSAQVILGG 95
K ++ +A KD + + N EVLV +E A M CH+ DD+ M +L G
Sbjct: 432 KPPAAHRAGWKDTVKVEGNVSEVLVKFNHDAPKEHAYMAHCHLLEHDDTGMMLGFTVLQG 491
Query: 96 E 96
+
Sbjct: 492 D 492
>pdb|4I0K|A Chain A, Crystal Structure Of Murine B7-H3 Extracellular Domain
Length = 222
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 61 LVLDRVQREDAGMYQCHVSADD-DSAQMSAQV 91
L L RV+ D G Y C VS D DSA +S QV
Sbjct: 74 LRLQRVRVTDEGSYTCFVSIQDFDSAAVSLQV 105
>pdb|3NBN|A Chain A, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|D Chain D, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
Length = 433
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 42/87 (48%), Gaps = 7/87 (8%)
Query: 101 ASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQ 160
+S+ + V + RI++ + S K+ S LK+ + + +V + +R++ +
Sbjct: 127 GNSDDIGVFLSKRIKVISKPSKKKQS-----LKNADLCIASGTKVALFNRLRSQTVSTRY 181
Query: 161 CHIEDGKYHMLSS--GELIIHQVDESD 185
H+E G +H S G IH +D+ +
Sbjct: 182 LHVEGGNFHASSQQWGAFFIHLLDDDE 208
>pdb|2F8X|C Chain C, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3V79|C Chain C, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 434
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 42/87 (48%), Gaps = 7/87 (8%)
Query: 101 ASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQ 160
+S+ + V + RI++ + S K+ S LK+ + + +V + +R++ +
Sbjct: 127 GNSDDIGVFLSKRIKVISKPSKKKQS-----LKNADLCIASGTKVALFNRLRSQTVSTRY 181
Query: 161 CHIEDGKYHMLSS--GELIIHQVDESD 185
H+E G +H S G IH +D+ +
Sbjct: 182 LHVEGGNFHASSQQWGAFFIHLLDDDE 208
>pdb|3S4S|G Chain G, Crystal Structure Of Cd4 Mutant Bound To Hla-Dr1
pdb|3S4S|H Chain H, Crystal Structure Of Cd4 Mutant Bound To Hla-Dr1
Length = 191
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 273 GSSLSISHVEESDSGVWNCVA 293
G +LS+S +E DSG W C
Sbjct: 145 GKTLSVSQLELQDSGTWTCTV 165
>pdb|4F9P|D Chain D, Crystal Structure Of The Human Btn3a1 Ectodomain In
Complex With The 103.2 Single Chain Antibody
pdb|4F9P|C Chain C, Crystal Structure Of The Human Btn3a1 Ectodomain In
Complex With The 103.2 Single Chain Antibody
Length = 254
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 39/86 (45%), Gaps = 22/86 (25%)
Query: 231 ILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRI------QRI--------GS-- 274
L+V +SV L C A + + WY+Q S ES R+ Q I GS
Sbjct: 146 TLSVTPGDSVSLSCRASQSISNNLHWYRQKS--HESPRLLIKYASQSIFGIPSRFSGSGS 203
Query: 275 ----SLSISHVEESDSGVWNCVANNS 296
+LSI+ VE D G++ C +NS
Sbjct: 204 GTEFTLSINSVETEDFGIYFCQQSNS 229
>pdb|1KOA|A Chain A, Twitchin Kinase Fragment (C.Elegans), Autoregulated
Protein Kinase And Immunoglobulin Domains
Length = 491
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 4/78 (5%)
Query: 234 VKKDESVILPCSAQGNPLPTIKWYKQDSPVEES----DRIQRIGSSLSISHVEESDSGVW 289
V + +S C + P + W+K D +++S R L+I+ V+ D G +
Sbjct: 388 VGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEY 447
Query: 290 NCVANNSEGQDKMQLFIQ 307
A NS G + +F+
Sbjct: 448 TVRAKNSYGTKEEIVFLN 465
>pdb|3MJ6|A Chain A, Crystal Structure Of The Gammadelta T Cell Costimulatory
Receptor Junctional Adhesion Molecule-Like Protein, Jaml
pdb|3MJ7|A Chain A, Crystal Structure Of The Complex Of Jaml And Coxsackie And
Adenovirus Receptor, Car
pdb|3MJ9|A Chain A, Crystal Structure Of Jaml In Complex With The Stimulatory
Antibody Hl4e10
Length = 268
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 62/167 (37%), Gaps = 41/167 (24%)
Query: 56 NSDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGELVEIASSNQVVVDVGHRIE 115
++D L+L VQ+ D G+Y C + ++S M V L V + V VG +
Sbjct: 81 HNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVEL---WVLPEEPRDLRVRVGDTTQ 137
Query: 116 LHCRVSP---KRLSSAKAWLKDG------LVLRRNS------------------------ 142
+ C + KR++ G VL +S
Sbjct: 138 MRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDIS 197
Query: 143 --DEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQV-DESDR 186
D + L V+ D G+Y C I GK + S +++H V DE R
Sbjct: 198 RNDGSIKLQTVKESDQGIYTCSIYVGK--LESRKTIVLHVVQDEFQR 242
>pdb|2OVS|A Chain A, Crystal Strcuture Of A Type Three Secretion System Protein
pdb|2OVS|B Chain B, Crystal Strcuture Of A Type Three Secretion System Protein
Length = 118
Score = 28.5 bits (62), Expect = 7.0, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 27/48 (56%)
Query: 196 NKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILP 243
N +TG + SV +G LS E+ L +E +LN+++D +++P
Sbjct: 36 NXITGGDIASVYQGVLSEDEDIILHVHRYNYEIPSVLNIEQDYQLVIP 83
>pdb|1MOE|A Chain A, The Three-Dimensional Structure Of An Engineered Scfv
T84.66 Dimer Or Diabody In Vl To Vh Linkage.
pdb|1MOE|B Chain B, The Three-Dimensional Structure Of An Engineered Scfv
T84.66 Dimer Or Diabody In Vl To Vh Linkage
Length = 240
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 31/148 (20%), Positives = 53/148 (35%), Gaps = 46/148 (31%)
Query: 13 IEMSPSGQVVVDVGHRIELHCRVS---------------------PKRLSSAKAWLKDGL 51
+ SP+ + V +G R + CR PK L + L+ G+
Sbjct: 4 LTQSPA-SLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGI 62
Query: 52 VLRRN-----SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGELVEIAS---- 102
+R + +D L++D V+ +D Y C + +D GG +EI
Sbjct: 63 PVRFSGTGSRTDFTLIIDPVEADDVATYYCQQTNED------PYTFGGGTKLEIKGGGSG 116
Query: 103 ---------SNQVVVDVGHRIELHCRVS 121
S +V+ G ++L C S
Sbjct: 117 GGGEVQLQQSGAELVEPGASVKLSCTAS 144
>pdb|3UTO|A Chain A, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
pdb|3UTO|B Chain B, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
Length = 573
Score = 28.1 bits (61), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 4/78 (5%)
Query: 234 VKKDESVILPCSAQGNPLPTIKWYKQDSPVEES----DRIQRIGSSLSISHVEESDSGVW 289
V + +S C + P + W+K D +++S R L+I+ V+ D G +
Sbjct: 494 VGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEY 553
Query: 290 NCVANNSEGQDKMQLFIQ 307
A NS G + +F+
Sbjct: 554 TVRAKNSYGTKEEIVFLN 571
>pdb|2WP3|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex
pdb|2WWM|C Chain C, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
pdb|2WWM|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig
Complex In Space Group P1
Length = 109
Score = 28.1 bits (61), Expect = 8.7, Method: Composition-based stats.
Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 4/58 (6%)
Query: 242 LPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGS----SLSISHVEESDSGVWNCVANN 295
L C G P P + W K + S+R+ L ++ +D+GV+ C A N
Sbjct: 34 LKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAGVYVCRARN 91
>pdb|3KNB|B Chain B, Crystal Structure Of The Titin C-Terminus In Complex With
Obscurin- Like 1
Length = 107
Score = 28.1 bits (61), Expect = 8.7, Method: Composition-based stats.
Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 4/58 (6%)
Query: 242 LPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGS----SLSISHVEESDSGVWNCVANN 295
L C G P P + W K + S+R+ L ++ +D+GV+ C A N
Sbjct: 33 LKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAGVYVCRARN 90
>pdb|3BP5|B Chain B, Crystal Structure Of The Mouse Pd-1 And Pd-L2 Complex
pdb|3BP6|B Chain B, Crystal Structure Of The Mouse Pd-1 Mutant And Pd-L2
Complex
Length = 202
Score = 28.1 bits (61), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 20/47 (42%)
Query: 220 LSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEES 266
+ A+ M RIL V V L C A+G PL + W P S
Sbjct: 101 VKASYMRIDTRILEVPGTGEVQLTCQARGYPLAEVSWQNVSVPANTS 147
>pdb|3RNQ|B Chain B, Crystal Structure Of The Complex Between The Extracellular
Domains Of Mouse Pd-1 Mutant And Pd-L2
Length = 201
Score = 28.1 bits (61), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 20/47 (42%)
Query: 220 LSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEES 266
+ A+ M RIL V V L C A+G PL + W P S
Sbjct: 100 VKASYMRIDTRILEVPGTGEVQLTCQARGYPLAEVSWQNVSVPANTS 146
>pdb|2WWK|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig F17r
Mutant Complex
Length = 109
Score = 27.7 bits (60), Expect = 9.7, Method: Composition-based stats.
Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 4/58 (6%)
Query: 242 LPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGS----SLSISHVEESDSGVWNCVANN 295
L C G P P + W K + S+R+ L ++ +D+GV+ C A N
Sbjct: 34 LKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAGVYVCRARN 91
>pdb|1FH5|L Chain L, Crystal Structure Of The Fab Fragment Of The Monoclonal
Antibody Mak33
Length = 213
Score = 27.7 bits (60), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 39/86 (45%), Gaps = 22/86 (25%)
Query: 231 ILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRI------QRI--------GS-- 274
L+V ESV L C A + + WY+Q S ES R+ Q I GS
Sbjct: 10 TLSVTPGESVSLSCRASQSISNNLHWYQQKS--HESPRLLIKYASQSISGIPSRFSGSGS 67
Query: 275 ----SLSISHVEESDSGVWNCVANNS 296
+LSI+ VE D G++ C +NS
Sbjct: 68 GTDFTLSINSVETEDFGMYYCQQSNS 93
>pdb|3BRG|C Chain C, Csl (Rbp-Jk) Bound To Dna
Length = 427
Score = 27.7 bits (60), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 42/87 (48%), Gaps = 7/87 (8%)
Query: 101 ASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQ 160
+S+ + V + RI++ + S K+ S LK+ + + +V + +R++ +
Sbjct: 127 GNSDDIGVFLSKRIKVISKPSKKKQS-----LKNADLCIASGTKVALFNRLRSQTVSTRY 181
Query: 161 CHIEDGKYHMLSS--GELIIHQVDESD 185
H+E G +H S G IH +D+ +
Sbjct: 182 LHVEGGNFHASSQQWGAFYIHLLDDDE 208
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,242,829
Number of Sequences: 62578
Number of extensions: 412265
Number of successful extensions: 2989
Number of sequences better than 100.0: 196
Number of HSP's better than 100.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 93
Number of HSP's that attempted gapping in prelim test: 2365
Number of HSP's gapped (non-prelim): 557
length of query: 371
length of database: 14,973,337
effective HSP length: 100
effective length of query: 271
effective length of database: 8,715,537
effective search space: 2361910527
effective search space used: 2361910527
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)