Query psy14542
Match_columns 371
No_of_seqs 266 out of 2735
Neff 11.6
Searched_HMMs 46136
Date Fri Aug 16 22:34:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14542.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14542hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3513|consensus 100.0 2.4E-41 5.2E-46 306.0 29.9 303 10-371 240-553 (1051)
2 KOG3513|consensus 100.0 2.3E-37 5.1E-42 280.3 30.9 325 11-371 40-461 (1051)
3 KOG4221|consensus 100.0 3.5E-33 7.7E-38 252.6 25.5 304 9-371 40-363 (1381)
4 KOG4194|consensus 100.0 1.4E-31 3.1E-36 226.6 20.5 271 8-313 501-800 (873)
5 KOG4222|consensus 100.0 9.3E-32 2E-36 242.1 18.7 304 9-371 30-350 (1281)
6 KOG4221|consensus 100.0 1.5E-30 3.3E-35 235.7 23.4 274 3-313 133-420 (1381)
7 PHA02785 IL-beta-binding prote 100.0 2.2E-29 4.7E-34 212.2 25.2 247 21-300 36-318 (326)
8 KOG4222|consensus 100.0 1E-30 2.2E-35 235.5 15.5 303 12-371 133-455 (1281)
9 KOG4194|consensus 99.9 4.3E-25 9.4E-30 187.7 15.9 231 96-371 502-742 (873)
10 PHA02785 IL-beta-binding prote 99.9 1.6E-22 3.4E-27 170.7 18.8 202 109-371 39-258 (326)
11 PHA02826 IL-1 receptor-like pr 99.8 2E-19 4.3E-24 142.5 17.9 147 20-197 31-210 (227)
12 PHA02826 IL-1 receptor-like pr 99.8 2E-19 4.4E-24 142.4 16.1 161 107-298 33-212 (227)
13 cd05851 Ig3_Contactin-1 Third 99.7 2.1E-17 4.6E-22 111.5 10.9 88 221-309 1-88 (88)
14 cd05762 Ig8_MLCK Eighth immuno 99.7 3.4E-17 7.3E-22 112.6 11.2 90 223-313 2-95 (98)
15 KOG3515|consensus 99.7 7.3E-16 1.6E-20 137.8 13.9 315 9-371 6-336 (741)
16 cd05852 Ig5_Contactin-1 Fifth 99.7 5.1E-16 1.1E-20 100.3 8.7 72 237-308 1-73 (73)
17 cd05728 Ig4_Contactin-2-like F 99.7 6.8E-16 1.5E-20 103.6 9.4 79 229-308 7-85 (85)
18 cd05745 Ig3_Peroxidasin Third 99.7 5E-16 1.1E-20 101.4 8.5 73 236-308 1-74 (74)
19 cd04968 Ig3_Contactin_like Thi 99.7 2E-15 4.3E-20 102.3 11.2 84 225-309 5-88 (88)
20 cd04975 Ig4_SCFR_like Fourth i 99.6 2.3E-15 5.1E-20 103.5 10.4 76 234-309 15-100 (101)
21 cd05867 Ig4_L1-CAM_like Fourth 99.6 3E-15 6.5E-20 98.2 9.8 72 237-308 1-75 (76)
22 cd05737 Ig_Myomesin_like_C C-t 99.6 4E-15 8.6E-20 101.6 10.3 75 234-308 13-92 (92)
23 cd05735 Ig8_DSCAM Eight immuno 99.6 4.8E-15 1E-19 99.9 10.4 77 237-313 1-86 (88)
24 cd05863 Ig2_VEGFR-3 Second imm 99.6 2.3E-15 4.9E-20 94.7 8.0 66 240-309 1-66 (67)
25 cd05851 Ig3_Contactin-1 Third 99.6 5.3E-15 1.1E-19 99.7 10.2 82 10-93 1-87 (88)
26 cd05723 Ig4_Neogenin Fourth im 99.6 4.5E-15 9.9E-20 95.8 9.4 70 239-308 1-71 (71)
27 cd05892 Ig_Myotilin_C C-termin 99.6 3E-15 6.6E-20 96.9 8.5 69 240-308 1-75 (75)
28 cd05762 Ig8_MLCK Eighth immuno 99.6 1E-14 2.2E-19 100.3 11.6 83 11-95 1-92 (98)
29 cd05747 Ig5_Titin_like M5, fif 99.6 6.9E-15 1.5E-19 100.5 10.6 86 220-306 2-91 (92)
30 cd05859 Ig4_PDGFR-alpha Fourth 99.6 5E-15 1.1E-19 102.1 9.9 76 234-309 15-100 (101)
31 cd05894 Ig_C5_MyBP-C C5 immuno 99.6 6.7E-15 1.4E-19 98.6 10.3 75 234-308 7-86 (86)
32 cd04976 Ig2_VEGFR Second immun 99.6 3E-15 6.6E-20 96.4 8.2 70 240-309 1-70 (71)
33 cd05730 Ig3_NCAM-1_like Third 99.6 7.3E-15 1.6E-19 101.2 9.8 77 234-310 15-94 (95)
34 cd04969 Ig5_Contactin_like Fif 99.6 6.2E-15 1.3E-19 96.0 8.6 72 237-308 1-73 (73)
35 cd05868 Ig4_NrCAM Fourth immun 99.6 7.7E-15 1.7E-19 96.0 8.9 72 237-308 1-75 (76)
36 cd04973 Ig1_FGFR First immunog 99.6 1.3E-14 2.7E-19 95.8 9.7 74 234-308 6-79 (79)
37 PF07679 I-set: Immunoglobulin 99.6 1E-14 2.2E-19 99.7 9.2 86 222-308 1-90 (90)
38 cd05893 Ig_Palladin_C C-termin 99.6 7.4E-15 1.6E-19 95.3 7.8 69 240-308 1-75 (75)
39 cd05853 Ig6_Contactin-4 Sixth 99.6 1.3E-14 2.7E-19 95.7 9.0 75 238-312 1-85 (85)
40 cd05869 Ig5_NCAM-1 Fifth immun 99.6 1.7E-14 3.8E-19 99.5 10.1 86 222-308 3-97 (97)
41 cd05865 Ig1_NCAM-1 First immun 99.6 3E-14 6.4E-19 97.2 11.0 75 234-308 12-95 (96)
42 cd05854 Ig6_Contactin-2 Sixth 99.6 2.1E-14 4.6E-19 96.0 10.0 75 238-312 1-85 (85)
43 cd05739 Ig3_RPTP_IIa_LAR_like 99.6 1.6E-14 3.5E-19 92.2 8.9 68 237-306 1-68 (69)
44 cd04978 Ig4_L1-NrCAM_like Four 99.6 1.6E-14 3.4E-19 95.2 9.0 72 237-308 1-75 (76)
45 cd05864 Ig2_VEGFR-2 Second imm 99.6 1.1E-14 2.5E-19 92.7 7.7 68 240-308 1-68 (70)
46 cd05725 Ig3_Robo Third immunog 99.6 1.9E-14 4.2E-19 92.5 8.4 69 240-308 1-69 (69)
47 cd05748 Ig_Titin_like Immunogl 99.6 2.1E-14 4.5E-19 93.8 8.5 70 239-308 1-74 (74)
48 cd05746 Ig4_Peroxidasin Fourth 99.6 1.5E-14 3.2E-19 92.9 7.5 67 240-306 1-68 (69)
49 cd05876 Ig3_L1-CAM Third immun 99.6 2.2E-14 4.8E-19 92.6 8.3 69 240-308 1-70 (71)
50 cd05744 Ig_Myotilin_C_like Imm 99.6 3.2E-14 6.9E-19 92.7 8.8 69 240-308 1-75 (75)
51 cd05857 Ig2_FGFR Second immuno 99.6 3E-14 6.5E-19 96.0 8.9 75 234-308 6-85 (85)
52 cd05773 Ig8_hNephrin_like Eigh 99.6 7.2E-14 1.6E-18 98.2 11.1 78 236-313 22-109 (109)
53 cd04972 Ig_TrkABC_d4 Fourth do 99.6 4.7E-14 1E-18 95.9 9.7 75 234-308 12-90 (90)
54 cd05855 Ig_TrkB_d5 Fifth domai 99.5 4.1E-14 8.8E-19 91.9 8.4 67 241-307 2-77 (79)
55 cd05865 Ig1_NCAM-1 First immun 99.5 1E-13 2.2E-18 94.6 10.6 81 12-94 2-96 (96)
56 cd04970 Ig6_Contactin_like Six 99.5 5.6E-14 1.2E-18 94.5 8.8 75 238-312 1-85 (85)
57 cd05771 IgC_Tapasin_R Tapasin- 99.5 2.3E-13 5E-18 100.7 12.9 125 60-197 2-130 (139)
58 cd05870 Ig5_NCAM-2 Fifth immun 99.5 1.2E-13 2.6E-18 95.5 10.6 79 229-308 9-98 (98)
59 cd07693 Ig1_Robo First immunog 99.5 1.1E-13 2.4E-18 96.7 10.3 86 222-308 2-99 (100)
60 cd05760 Ig2_PTK7 Second immuno 99.5 6.8E-14 1.5E-18 91.8 8.6 70 240-309 1-75 (77)
61 cd07702 Ig2_VEGFR-1 Second imm 99.5 5.8E-14 1.2E-18 89.6 7.9 68 240-307 1-69 (72)
62 cd05891 Ig_M-protein_C C-termi 99.5 1.2E-13 2.5E-18 94.1 10.0 75 234-308 13-92 (92)
63 cd05732 Ig5_NCAM-1_like Fifth 99.5 1E-13 2.2E-18 95.8 9.8 78 230-308 10-96 (96)
64 cd05747 Ig5_Titin_like M5, fif 99.5 1.3E-13 2.8E-18 94.2 10.1 80 10-91 3-91 (92)
65 cd05726 Ig4_Robo Fhird immunog 99.5 1.2E-13 2.5E-18 93.9 9.9 77 237-313 1-86 (90)
66 cd05866 Ig1_NCAM-2 First immun 99.5 2.1E-13 4.5E-18 92.1 10.8 79 228-308 7-91 (92)
67 cd05745 Ig3_Peroxidasin Third 99.5 6.2E-14 1.3E-18 91.4 7.8 68 25-93 1-74 (74)
68 cd05856 Ig2_FGFRL1-like Second 99.5 1E-13 2.2E-18 92.9 9.1 75 234-308 6-82 (82)
69 cd04971 Ig_TrKABC_d5 Fifth dom 99.5 9.6E-14 2.1E-18 91.5 8.6 66 242-307 3-79 (81)
70 cd05848 Ig1_Contactin-5 First 99.5 1.7E-13 3.7E-18 93.6 10.1 66 236-301 18-86 (94)
71 PF07679 I-set: Immunoglobulin 99.5 1.7E-13 3.8E-18 93.5 10.3 81 11-93 1-90 (90)
72 cd05850 Ig1_Contactin-2 First 99.5 2.7E-13 5.8E-18 92.7 10.9 70 237-306 19-92 (94)
73 cd05743 Ig_Perlecan_D2_like Im 99.5 7.8E-14 1.7E-18 91.9 7.9 72 237-308 1-76 (78)
74 cd04975 Ig4_SCFR_like Fourth i 99.5 2.3E-13 5E-18 93.6 10.5 75 20-94 12-100 (101)
75 cd05894 Ig_C5_MyBP-C C5 immuno 99.5 2.3E-13 5E-18 91.2 10.0 72 21-93 5-86 (86)
76 cd05737 Ig_Myomesin_like_C C-t 99.5 2E-13 4.4E-18 93.2 9.7 75 17-93 8-92 (92)
77 cd04968 Ig3_Contactin_like Thi 99.5 2.5E-13 5.4E-18 92.0 10.1 81 11-93 2-87 (88)
78 cd05764 Ig_2 Subgroup of the i 99.5 1.8E-13 4E-18 89.4 9.0 72 237-308 1-74 (74)
79 cd05852 Ig5_Contactin-1 Fifth 99.5 1.5E-13 3.3E-18 88.7 8.4 67 26-93 1-73 (73)
80 cd04972 Ig_TrkABC_d4 Fourth do 99.5 2.7E-13 5.8E-18 92.2 10.0 78 15-93 4-90 (90)
81 cd05849 Ig1_Contactin-1 First 99.5 2.5E-13 5.3E-18 92.4 9.8 70 237-306 19-91 (93)
82 cd05731 Ig3_L1-CAM_like Third 99.5 9.7E-14 2.1E-18 90.0 7.5 69 240-308 1-70 (71)
83 cd05738 Ig2_RPTP_IIa_LAR_like 99.5 1.4E-13 3.1E-18 89.6 8.1 69 240-308 1-73 (74)
84 cd05863 Ig2_VEGFR-3 Second imm 99.5 1.4E-13 3.1E-18 86.5 7.7 65 29-94 1-66 (67)
85 cd05756 Ig1_IL1R_like First im 99.5 2E-13 4.3E-18 92.8 8.6 75 234-308 11-94 (94)
86 cd05740 Ig_CEACAM_D4 Fourth im 99.5 3.1E-13 6.8E-18 91.4 9.4 73 234-308 15-90 (91)
87 cd05763 Ig_1 Subgroup of the i 99.5 2.5E-13 5.3E-18 88.9 8.6 69 240-308 1-74 (75)
88 cd05752 Ig1_FcgammaR_like Frst 99.5 3.7E-13 8E-18 87.9 9.3 68 11-81 1-68 (78)
89 cd05869 Ig5_NCAM-1 Fifth immun 99.5 5.6E-13 1.2E-17 91.9 10.3 82 10-93 2-97 (97)
90 cd05728 Ig4_Contactin-2-like F 99.5 2.2E-13 4.7E-18 91.4 8.0 77 15-93 4-85 (85)
91 cd05730 Ig3_NCAM-1_like Third 99.5 7.2E-13 1.6E-17 91.2 10.2 83 11-94 2-93 (95)
92 cd04974 Ig3_FGFR Third immunog 99.5 3.8E-13 8.3E-18 91.2 8.6 73 237-309 1-90 (90)
93 cd05867 Ig4_L1-CAM_like Fourth 99.5 4.4E-13 9.5E-18 87.9 8.6 67 26-93 1-75 (76)
94 cd05722 Ig1_Neogenin First imm 99.5 6.4E-13 1.4E-17 91.4 9.7 75 234-308 11-95 (95)
95 cd05866 Ig1_NCAM-2 First immun 99.5 1E-12 2.2E-17 88.8 10.2 79 12-93 2-91 (92)
96 cd05724 Ig2_Robo Second immuno 99.5 7.3E-13 1.6E-17 89.5 9.6 75 234-308 8-86 (86)
97 cd05749 Ig2_Tyro3_like Second 99.5 4.8E-13 1E-17 87.9 8.4 68 229-301 6-74 (81)
98 cd04973 Ig1_FGFR First immunog 99.4 6.9E-13 1.5E-17 87.5 8.4 71 21-93 4-79 (79)
99 cd05724 Ig2_Robo Second immuno 99.4 1.1E-12 2.3E-17 88.7 9.5 76 16-92 2-85 (86)
100 cd05870 Ig5_NCAM-2 Fifth immun 99.4 1.8E-12 3.9E-17 89.6 10.8 81 10-93 2-98 (98)
101 cd05736 Ig2_Follistatin_like S 99.4 7.5E-13 1.6E-17 86.9 8.5 71 240-310 1-75 (76)
102 cd05857 Ig2_FGFR Second immuno 99.4 1.1E-12 2.4E-17 88.3 9.5 72 21-93 4-85 (85)
103 cd05868 Ig4_NrCAM Fourth immun 99.4 8E-13 1.7E-17 86.4 8.5 68 26-94 1-76 (76)
104 cd05758 Ig5_KIRREL3-like Fifth 99.4 1.4E-12 3E-17 90.2 10.1 77 229-306 9-97 (98)
105 KOG3515|consensus 99.4 9.7E-13 2.1E-17 118.2 11.7 207 107-371 18-242 (741)
106 cd05858 Ig3_FGFR-2 Third immun 99.4 9.1E-13 2E-17 89.5 8.9 72 237-308 1-89 (90)
107 cd05732 Ig5_NCAM-1_like Fifth 99.4 1.3E-12 2.9E-17 90.2 9.8 81 10-93 2-96 (96)
108 cd05891 Ig_M-protein_C C-termi 99.4 1.2E-12 2.6E-17 89.1 9.3 75 17-93 8-92 (92)
109 cd05771 IgC_Tapasin_R Tapasin- 99.4 2.5E-12 5.5E-17 95.2 11.7 114 175-299 2-133 (139)
110 cd05892 Ig_Myotilin_C C-termin 99.4 7.6E-13 1.6E-17 85.7 7.7 64 29-93 1-75 (75)
111 cd04977 Ig1_NCAM-1_like First 99.4 1.9E-12 4E-17 88.1 9.9 79 12-93 2-92 (92)
112 cd04969 Ig5_Contactin_like Fif 99.4 1.1E-12 2.3E-17 85.3 8.3 67 26-93 1-73 (73)
113 cd05859 Ig4_PDGFR-alpha Fourth 99.4 1.5E-12 3.3E-17 89.7 9.4 73 21-94 13-100 (101)
114 cd05753 Ig2_FcgammaR_like Seco 99.4 1.1E-12 2.4E-17 87.1 8.4 78 14-92 3-82 (83)
115 cd04977 Ig1_NCAM-1_like First 99.4 3.1E-12 6.7E-17 87.0 10.4 74 234-308 12-92 (92)
116 cd05740 Ig_CEACAM_D4 Fourth im 99.4 2.2E-12 4.8E-17 87.3 9.5 71 21-93 13-90 (91)
117 cd05750 Ig_Pro_neuregulin Immu 99.4 7.4E-13 1.6E-17 86.9 7.0 66 240-305 1-74 (75)
118 cd05754 Ig3_Perlecan_like Thir 99.4 2.5E-12 5.5E-17 86.4 9.4 79 13-91 3-84 (85)
119 cd04978 Ig4_L1-NrCAM_like Four 99.4 2.3E-12 5E-17 84.7 8.7 67 26-93 1-75 (76)
120 cd05853 Ig6_Contactin-4 Sixth 99.4 2.3E-12 4.9E-17 85.0 8.3 68 27-94 1-82 (85)
121 cd05854 Ig6_Contactin-2 Sixth 99.4 3.9E-12 8.4E-17 85.0 9.4 67 27-94 1-82 (85)
122 cd05765 Ig_3 Subgroup of the i 99.4 2.7E-12 5.9E-17 85.6 8.7 72 237-308 1-81 (81)
123 cd05893 Ig_Palladin_C C-termin 99.4 1.5E-12 3.2E-17 84.5 7.1 64 29-93 1-75 (75)
124 cd05735 Ig8_DSCAM Eight immuno 99.4 3.5E-12 7.6E-17 85.9 9.2 69 26-95 1-83 (88)
125 cd05742 Ig1_VEGFR_like First i 99.4 2.9E-12 6.3E-17 85.8 8.7 72 237-308 1-83 (84)
126 cd05752 Ig1_FcgammaR_like Frst 99.4 1.9E-12 4.1E-17 84.6 7.4 73 225-307 4-77 (78)
127 cd05756 Ig1_IL1R_like First im 99.4 2.3E-12 5E-17 87.6 7.9 73 21-93 9-94 (94)
128 cd07693 Ig1_Robo First immunog 99.4 5.8E-12 1.3E-16 87.9 10.1 82 10-93 1-99 (100)
129 cd05723 Ig4_Neogenin Fourth im 99.4 2.2E-12 4.7E-17 83.2 7.2 65 28-93 1-71 (71)
130 cd05856 Ig2_FGFRL1-like Second 99.4 2.6E-12 5.6E-17 86.0 7.8 72 21-93 4-82 (82)
131 cd04976 Ig2_VEGFR Second immun 99.4 2.5E-12 5.4E-17 82.8 7.3 65 29-94 1-70 (71)
132 cd05864 Ig2_VEGFR-2 Second imm 99.4 2.2E-12 4.8E-17 82.2 6.9 64 29-93 1-68 (70)
133 cd05748 Ig_Titin_like Immunogl 99.4 5.6E-12 1.2E-16 82.3 9.0 65 28-93 1-74 (74)
134 cd04967 Ig1_Contactin First Ig 99.4 7.3E-12 1.6E-16 85.3 9.7 66 236-301 18-86 (91)
135 cd05876 Ig3_L1-CAM Third immun 99.4 2.9E-12 6.2E-17 82.7 7.0 64 29-93 1-70 (71)
136 cd05744 Ig_Myotilin_C_like Imm 99.4 4.9E-12 1.1E-16 82.4 8.1 64 29-93 1-75 (75)
137 cd05734 Ig7_DSCAM Seventh immu 99.4 5E-12 1.1E-16 83.6 8.2 69 240-308 1-79 (79)
138 cd05746 Ig4_Peroxidasin Fourth 99.3 4.6E-12 1E-16 81.2 7.1 62 29-91 1-68 (69)
139 cd05757 Ig2_IL1R_like Second i 99.3 8.4E-12 1.8E-16 84.3 8.4 75 234-308 7-86 (92)
140 cd05850 Ig1_Contactin-2 First 99.3 2.3E-11 4.9E-16 83.1 10.7 74 11-86 2-86 (94)
141 cd05873 Ig_Sema4D_like Immunog 99.3 1.3E-11 2.8E-16 81.8 9.1 63 234-297 8-71 (87)
142 cd05848 Ig1_Contactin-5 First 99.3 1.4E-11 2.9E-16 84.2 9.5 74 11-86 2-86 (94)
143 cd05725 Ig3_Robo Third immunog 99.3 6.3E-12 1.4E-16 80.7 7.3 64 29-93 1-69 (69)
144 cd05739 Ig3_RPTP_IIa_LAR_like 99.3 9.4E-12 2E-16 79.4 7.9 63 26-91 1-68 (69)
145 cd05733 Ig6_L1-CAM_like Sixth 99.3 4.7E-12 1E-16 83.1 6.6 62 240-301 1-70 (77)
146 cd04970 Ig6_Contactin_like Six 99.3 1.3E-11 2.9E-16 82.8 9.0 67 27-94 1-82 (85)
147 cd05861 Ig1_PDGFR-alphabeta Fr 99.3 2.1E-11 4.6E-16 81.3 9.9 73 237-309 1-83 (84)
148 cd05874 Ig6_NrCAM Sixth immuno 99.3 1.1E-11 2.4E-16 81.1 8.3 63 240-302 1-71 (77)
149 cd05875 Ig6_hNeurofascin_like 99.3 1.2E-11 2.7E-16 80.8 8.5 63 240-302 1-71 (77)
150 cd05773 Ig8_hNephrin_like Eigh 99.3 2.3E-11 5E-16 85.5 10.4 84 10-94 4-105 (109)
151 cd05760 Ig2_PTK7 Second immuno 99.3 8.5E-12 1.8E-16 81.8 7.6 65 29-94 1-75 (77)
152 cd05764 Ig_2 Subgroup of the i 99.3 1.5E-11 3.2E-16 80.3 8.6 67 26-93 1-74 (74)
153 cd05722 Ig1_Neogenin First imm 99.3 2.1E-11 4.6E-16 83.8 9.8 78 14-93 3-95 (95)
154 cd05855 Ig_TrkB_d5 Fifth domai 99.3 1.1E-11 2.3E-16 80.6 7.7 61 31-92 3-77 (79)
155 cd05729 Ig2_FGFR_like Second i 99.3 2.3E-11 4.9E-16 82.0 9.6 75 234-308 6-85 (85)
156 cd05849 Ig1_Contactin-1 First 99.3 3.3E-11 7.2E-16 81.9 10.2 74 11-86 2-85 (93)
157 cd05749 Ig2_Tyro3_like Second 99.3 2.1E-11 4.6E-16 80.1 8.6 69 14-86 2-74 (81)
158 cd05731 Ig3_L1-CAM_like Third 99.3 1E-11 2.2E-16 80.5 7.0 64 29-93 1-70 (71)
159 cd05743 Ig_Perlecan_D2_like Im 99.3 1.4E-11 3.1E-16 81.1 7.4 66 26-92 1-75 (78)
160 cd05763 Ig_1 Subgroup of the i 99.3 1.6E-11 3.4E-16 80.4 7.5 64 29-93 1-74 (75)
161 cd05895 Ig_Pro_neuregulin-1 Im 99.3 1.2E-11 2.7E-16 81.1 7.0 66 240-305 1-75 (76)
162 cd04979 Ig_Semaphorin_C Immuno 99.3 4.2E-11 9.1E-16 81.2 9.7 76 234-310 8-88 (89)
163 cd05754 Ig3_Perlecan_like Thir 99.3 2.7E-11 5.9E-16 81.4 8.5 71 234-306 13-84 (85)
164 cd04971 Ig_TrKABC_d5 Fifth dom 99.3 3.3E-11 7.3E-16 79.4 8.2 61 31-92 3-79 (81)
165 cd05757 Ig2_IL1R_like Second i 99.3 3.9E-11 8.6E-16 81.0 8.4 73 21-93 5-86 (92)
166 cd04974 Ig3_FGFR Third immunog 99.3 2.8E-11 6.2E-16 82.0 7.7 68 26-94 1-90 (90)
167 cd05873 Ig_Sema4D_like Immunog 99.2 5.1E-11 1.1E-15 78.9 8.3 64 16-82 2-71 (87)
168 cd05738 Ig2_RPTP_IIa_LAR_like 99.2 3.8E-11 8.1E-16 78.1 7.5 64 29-93 1-73 (74)
169 cd05726 Ig4_Robo Fhird immunog 99.2 6E-11 1.3E-15 80.6 8.7 83 111-215 1-83 (90)
170 cd05895 Ig_Pro_neuregulin-1 Im 99.2 4.8E-11 1E-15 78.2 7.9 62 29-90 1-75 (76)
171 cd05727 Ig2_Contactin-2-like S 99.2 2.7E-11 5.8E-16 81.4 6.4 68 16-83 8-84 (96)
172 cd05858 Ig3_FGFR-2 Third immun 99.2 5.2E-11 1.1E-15 80.8 7.9 67 26-93 1-89 (90)
173 cd05758 Ig5_KIRREL3-like Fifth 99.2 1.6E-10 3.4E-15 79.8 10.5 79 10-91 2-97 (98)
174 cd05750 Ig_Pro_neuregulin Immu 99.2 6.3E-11 1.4E-15 77.6 7.9 62 29-90 1-74 (75)
175 cd05898 Ig5_KIRREL3 Fifth immu 99.2 1.7E-10 3.6E-15 78.3 10.0 78 228-306 8-97 (98)
176 cd07702 Ig2_VEGFR-1 Second imm 99.2 4.3E-11 9.3E-16 76.4 6.7 62 29-91 1-68 (72)
177 cd05882 Ig1_Necl-1 First (N-te 99.2 1.2E-10 2.6E-15 79.2 9.1 70 21-92 7-94 (95)
178 cd05753 Ig2_FcgammaR_like Seco 99.2 6.2E-11 1.3E-15 78.7 7.5 70 234-307 11-82 (83)
179 cd05765 Ig_3 Subgroup of the i 99.2 9.5E-11 2E-15 78.1 8.4 67 26-93 1-81 (81)
180 cd05736 Ig2_Follistatin_like S 99.2 9.2E-11 2E-15 76.9 7.9 65 29-94 1-74 (76)
181 cd05742 Ig1_VEGFR_like First i 99.2 7.5E-11 1.6E-15 79.0 7.5 68 26-94 1-84 (84)
182 cd05861 Ig1_PDGFR-alphabeta Fr 99.2 1.6E-10 3.5E-15 77.0 8.9 68 26-94 1-83 (84)
183 smart00408 IGc2 Immunoglobulin 99.2 1.2E-10 2.7E-15 73.3 7.9 63 236-298 1-63 (63)
184 cd07701 Ig1_Necl-3 First (N-te 99.2 2.6E-10 5.6E-15 77.9 9.6 74 234-308 9-95 (95)
185 cd04979 Ig_Semaphorin_C Immuno 99.2 1.6E-10 3.4E-15 78.3 8.3 72 21-94 6-87 (89)
186 cd05871 Ig_Semaphorin_classIII 99.2 3.2E-10 6.9E-15 76.6 9.7 76 234-310 8-90 (91)
187 cd05882 Ig1_Necl-1 First (N-te 99.2 3.9E-10 8.5E-15 76.6 9.3 62 234-295 9-83 (95)
188 cd05729 Ig2_FGFR_like Second i 99.2 4.6E-10 9.9E-15 75.6 9.7 72 21-93 4-85 (85)
189 cd05862 Ig1_VEGFR First immuno 99.1 2.5E-10 5.4E-15 76.4 7.9 74 237-310 1-86 (86)
190 PF13895 Ig_2: Immunoglobulin 99.1 4.5E-10 9.7E-15 74.7 9.2 78 11-93 2-80 (80)
191 cd05898 Ig5_KIRREL3 Fifth immu 99.1 9.2E-10 2E-14 74.7 10.5 80 10-91 2-97 (98)
192 PF13895 Ig_2: Immunoglobulin 99.1 3.8E-10 8.3E-15 75.0 8.1 69 234-308 11-80 (80)
193 cd05751 Ig1_LILRB1_like First 99.1 4.3E-10 9.3E-15 76.3 8.3 69 9-81 1-75 (91)
194 cd04967 Ig1_Contactin First Ig 99.1 5.4E-10 1.2E-14 76.0 8.7 74 11-86 2-86 (91)
195 cd05727 Ig2_Contactin-2-like S 99.1 4.1E-10 8.8E-15 75.7 7.2 67 234-300 15-86 (96)
196 cd05733 Ig6_L1-CAM_like Sixth 99.1 4.2E-10 9.2E-15 73.7 7.2 57 29-86 1-70 (77)
197 cd05860 Ig4_SCFR Fourth immuno 99.1 2E-09 4.4E-14 72.4 9.9 76 234-309 15-100 (101)
198 cd07701 Ig1_Necl-3 First (N-te 99.1 9.1E-10 2E-14 75.2 8.5 74 17-93 4-95 (95)
199 cd05885 Ig2_Necl-4 Second immu 99.1 1.2E-09 2.6E-14 70.7 8.2 61 240-300 2-69 (80)
200 PHA03376 BARF1; Provisional 99.1 1.7E-08 3.7E-13 74.4 15.0 135 107-261 22-163 (221)
201 cd05734 Ig7_DSCAM Seventh immu 99.1 5.9E-10 1.3E-14 73.6 6.9 64 29-93 1-79 (79)
202 cd05845 Ig2_L1-CAM_like Second 99.1 7E-10 1.5E-14 74.4 7.3 67 234-300 15-85 (95)
203 cd05874 Ig6_NrCAM Sixth immuno 99.1 1.2E-09 2.6E-14 71.4 8.0 58 29-87 1-71 (77)
204 cd05875 Ig6_hNeurofascin_like 99.1 1.4E-09 3E-14 71.1 8.2 57 29-86 1-70 (77)
205 cd05845 Ig2_L1-CAM_like Second 99.1 4.9E-10 1.1E-14 75.2 6.1 67 16-82 8-82 (95)
206 cd05896 Ig1_IL1RAPL-1_like Fir 99.1 9E-10 2E-14 74.2 7.3 73 21-93 10-104 (104)
207 cd05896 Ig1_IL1RAPL-1_like Fir 99.0 2E-09 4.4E-14 72.6 8.8 75 234-308 12-104 (104)
208 cd05897 Ig2_IL1R2_like Second 99.0 1.1E-09 2.3E-14 73.9 7.5 75 234-308 7-93 (95)
209 PHA03376 BARF1; Provisional 99.0 4.6E-09 1E-13 77.4 11.1 115 20-136 20-163 (221)
210 PF00047 ig: Immunoglobulin do 99.0 1.1E-09 2.4E-14 69.1 6.7 57 237-293 1-64 (64)
211 cd05871 Ig_Semaphorin_classIII 99.0 2.5E-09 5.4E-14 72.2 8.5 72 21-94 6-89 (91)
212 cd07690 Ig1_CD4 First immunogl 99.0 2.6E-09 5.6E-14 72.1 7.6 62 21-83 2-89 (94)
213 cd05862 Ig1_VEGFR First immuno 99.0 3.2E-09 6.9E-14 71.0 7.8 69 26-94 1-85 (86)
214 smart00410 IG_like Immunoglobu 99.0 1.3E-08 2.8E-13 68.5 10.9 75 234-308 6-85 (86)
215 smart00409 IG Immunoglobulin. 99.0 1.3E-08 2.8E-13 68.5 10.9 75 234-308 6-85 (86)
216 cd05885 Ig2_Necl-4 Second immu 99.0 4.2E-09 9E-14 68.2 7.7 56 29-84 2-68 (80)
217 cd05872 Ig_Sema4B_like Immunog 99.0 7.5E-09 1.6E-13 68.0 8.9 65 234-300 8-72 (85)
218 cd05897 Ig2_IL1R2_like Second 99.0 1.9E-09 4E-14 72.7 6.2 65 21-85 5-81 (95)
219 cd05717 Ig1_Necl-1-3_like Firs 99.0 9.4E-09 2E-13 70.6 9.8 74 234-308 9-95 (95)
220 smart00408 IGc2 Immunoglobulin 99.0 4.3E-09 9.2E-14 66.1 7.4 57 25-82 1-62 (63)
221 smart00409 IG Immunoglobulin. 98.9 2.1E-08 4.5E-13 67.4 10.8 72 21-93 4-85 (86)
222 smart00410 IG_like Immunoglobu 98.9 2.1E-08 4.5E-13 67.4 10.8 72 21-93 4-85 (86)
223 cd05717 Ig1_Necl-1-3_like Firs 98.9 1.2E-08 2.6E-13 70.0 9.6 71 21-93 7-95 (95)
224 cd07690 Ig1_CD4 First immunogl 98.9 3.8E-09 8.2E-14 71.3 6.5 66 234-299 4-90 (94)
225 cd05774 Ig_CEACAM_D1 First imm 98.9 6.5E-09 1.4E-13 71.8 7.4 71 21-92 8-104 (105)
226 PF00047 ig: Immunoglobulin do 98.9 1.5E-09 3.1E-14 68.6 3.7 53 26-78 1-64 (64)
227 cd05759 Ig2_KIRREL3-like Secon 98.9 2E-08 4.3E-13 66.8 8.5 64 240-303 2-75 (82)
228 cd05751 Ig1_LILRB1_like First 98.8 1.8E-08 3.9E-13 68.3 7.7 62 234-296 13-75 (91)
229 cd07694 Ig2_CD4 Second immunog 98.8 6.8E-08 1.5E-12 62.5 9.4 81 12-94 2-86 (88)
230 PF13927 Ig_3: Immunoglobulin 98.8 2.1E-08 4.6E-13 65.5 7.0 69 10-80 1-75 (75)
231 cd05860 Ig4_SCFR Fourth immuno 98.8 7.1E-08 1.5E-12 65.0 9.3 73 21-94 13-100 (101)
232 cd05877 Ig_LP_like Immunoglobu 98.8 3.4E-08 7.4E-13 69.4 8.0 70 25-94 1-103 (106)
233 cd05872 Ig_Sema4B_like Immunog 98.8 3.2E-08 6.9E-13 65.1 7.2 72 21-94 6-83 (85)
234 cd05879 Ig_P0 Immunoglobulin ( 98.8 8.8E-08 1.9E-12 67.6 9.6 72 21-92 8-115 (116)
235 cd05881 Ig1_Necl-2 First (N-te 98.8 1.3E-07 2.9E-12 63.8 10.1 59 21-80 7-83 (95)
236 cd05714 Ig_CSPGs_LP Immunoglob 98.8 7.9E-08 1.7E-12 67.5 9.4 70 25-94 1-103 (106)
237 cd05775 Ig_SLAM-CD84_like_N N- 98.8 4.8E-08 1E-12 67.0 8.0 71 24-94 2-97 (97)
238 PF13927 Ig_3: Immunoglobulin 98.7 1E-08 2.2E-13 67.1 3.9 59 237-295 15-75 (75)
239 cd05713 Ig_MOG_like Immunoglob 98.7 8.6E-08 1.9E-12 66.5 8.7 68 26-93 1-99 (100)
240 cd05878 Ig_Aggrecan_like Immun 98.7 1.2E-07 2.6E-12 66.7 9.3 70 25-94 1-107 (110)
241 cd05846 Ig1_MRC-OX-2_like Firs 98.7 5.4E-08 1.2E-12 67.0 7.3 69 26-94 1-97 (97)
242 cd05711 Ig_FcalphaRI Immunoglo 98.7 7.7E-08 1.7E-12 65.5 7.8 67 10-80 1-76 (94)
243 cd05774 Ig_CEACAM_D1 First imm 98.7 1.3E-07 2.9E-12 65.3 8.7 74 234-307 10-104 (105)
244 cd05741 Ig_CEACAM_D1_like Firs 98.7 6E-08 1.3E-12 66.2 6.9 66 26-92 1-91 (92)
245 PHA02987 Ig domain OX-2-like p 98.7 1.6E-07 3.6E-12 69.9 9.3 74 21-94 25-122 (189)
246 cd05759 Ig2_KIRREL3-like Secon 98.7 1.3E-07 2.9E-12 62.8 8.2 65 28-92 1-81 (82)
247 cd05900 Ig_Aggrecan Immunoglob 98.7 2E-07 4.3E-12 65.3 9.3 70 25-94 1-109 (112)
248 PHA03270 envelope glycoprotein 98.7 3.5E-05 7.6E-10 64.8 23.6 205 59-295 182-401 (466)
249 cd05886 Ig1_Nectin-1_like Firs 98.7 2E-07 4.3E-12 63.7 8.4 38 57-94 61-99 (99)
250 cd04983 IgV_TCR_alpha_like Imm 98.7 1E-07 2.2E-12 67.4 7.0 65 16-82 4-93 (109)
251 cd05880 Ig_EVA1 Immunoglobulin 98.7 1.4E-07 3.1E-12 66.9 7.7 72 21-92 8-114 (115)
252 cd05883 Ig2_Necl-2 Second immu 98.6 3.8E-07 8.3E-12 59.3 8.6 71 240-310 2-81 (82)
253 cd05715 Ig_P0-like Immunoglobu 98.6 2E-07 4.4E-12 66.5 8.0 66 17-83 5-104 (116)
254 cd05755 Ig2_ICAM-1_like Second 98.6 3.6E-07 7.9E-12 62.0 8.7 70 12-83 3-86 (100)
255 cd05881 Ig1_Necl-2 First (N-te 98.6 4.9E-07 1.1E-11 61.1 9.1 62 234-295 9-83 (95)
256 cd05877 Ig_LP_like Immunoglobu 98.6 4.7E-07 1E-11 63.5 9.5 75 236-310 1-104 (106)
257 cd05741 Ig_CEACAM_D1_like Firs 98.6 2.5E-07 5.4E-12 63.1 7.7 79 111-197 1-79 (92)
258 cd05718 Ig1_PVR_like First imm 98.6 4.3E-07 9.4E-12 62.7 8.8 68 27-94 1-98 (98)
259 PF07686 V-set: Immunoglobulin 98.6 2.3E-07 5E-12 66.2 7.7 68 13-81 4-101 (114)
260 cd05887 Ig1_Nectin-3_like Firs 98.6 3.4E-07 7.3E-12 62.0 7.9 68 27-94 1-96 (96)
261 cd05902 Ig_Neurocan Immunoglob 98.6 5.1E-07 1.1E-11 62.9 9.0 69 26-94 2-107 (110)
262 cd05899 IgV_TCR_beta Immunoglo 98.6 2.2E-07 4.8E-12 65.6 7.4 65 15-82 3-95 (110)
263 PHA03269 envelope glycoprotein 98.6 1.1E-05 2.3E-10 68.8 18.0 207 57-295 287-512 (566)
264 cd04980 IgV_L_kappa Immunoglob 98.6 6.9E-07 1.5E-11 62.7 9.2 67 13-80 3-92 (106)
265 cd05714 Ig_CSPGs_LP Immunoglob 98.6 7.8E-07 1.7E-11 62.4 9.4 75 236-310 1-104 (106)
266 PHA03273 envelope glycoprotein 98.6 2.3E-05 5E-10 66.6 19.0 205 59-295 198-421 (486)
267 cd05900 Ig_Aggrecan Immunoglob 98.5 1.2E-06 2.7E-11 61.3 9.9 74 236-309 1-109 (112)
268 cd05883 Ig2_Necl-2 Second immu 98.5 1.1E-06 2.4E-11 57.2 8.8 66 29-94 2-80 (82)
269 cd05901 Ig_Versican Immunoglob 98.5 1.9E-06 4.1E-11 60.2 9.9 38 57-94 77-114 (117)
270 cd05713 Ig_MOG_like Immunoglob 98.5 1.3E-06 2.9E-11 60.5 9.1 72 237-308 1-99 (100)
271 cd05888 Ig1_Nectin-4_like Frst 98.5 1.2E-06 2.6E-11 60.5 8.7 37 57-93 62-99 (100)
272 cd05711 Ig_FcalphaRI Immunoglo 98.5 1.1E-06 2.3E-11 59.9 8.1 60 234-294 12-75 (94)
273 cd04983 IgV_TCR_alpha_like Imm 98.4 1.7E-06 3.7E-11 61.1 8.6 65 234-298 10-94 (109)
274 cd05755 Ig2_ICAM-1_like Second 98.4 1.2E-06 2.6E-11 59.5 7.3 67 234-300 13-88 (100)
275 cd07706 IgV_TCR_delta Immunogl 98.4 1.4E-06 3E-11 62.2 8.1 66 14-80 3-93 (116)
276 cd05718 Ig1_PVR_like First imm 98.4 2.3E-06 5E-11 59.1 9.0 71 238-308 1-97 (98)
277 cd05879 Ig_P0 Immunoglobulin ( 98.4 3E-06 6.4E-11 59.9 9.3 67 234-300 10-106 (116)
278 cd05716 Ig_pIgR Immunoglobulin 98.4 1.1E-06 2.3E-11 60.7 7.0 62 21-82 2-87 (98)
279 cd00099 IgV Immunoglobulin var 98.4 5.9E-07 1.3E-11 63.0 5.5 62 22-83 2-91 (105)
280 cd05878 Ig_Aggrecan_like Immun 98.4 2.3E-06 5E-11 60.1 8.4 75 236-310 1-108 (110)
281 cd05846 Ig1_MRC-OX-2_like Firs 98.4 2.2E-06 4.7E-11 58.9 8.1 91 111-206 1-92 (97)
282 cd00098 IgC Immunoglobulin Con 98.4 1.3E-06 2.9E-11 59.9 6.7 64 236-299 12-87 (95)
283 cd05880 Ig_EVA1 Immunoglobulin 98.4 2.9E-06 6.4E-11 60.2 8.5 92 104-197 6-101 (115)
284 PHA03271 envelope glycoprotein 98.4 0.00049 1.1E-08 57.8 21.7 210 57-295 205-430 (490)
285 cd07705 Ig2_Necl-1 Second immu 98.3 5.5E-06 1.2E-10 54.8 8.7 60 240-299 2-71 (83)
286 cd05887 Ig1_Nectin-3_like Firs 98.3 3.8E-06 8.3E-11 56.9 7.8 89 112-213 1-95 (96)
287 cd05889 Ig1_DNAM-1_like First 98.3 3.6E-06 7.9E-11 57.0 7.7 65 27-91 1-93 (96)
288 cd05899 IgV_TCR_beta Immunoglo 98.3 4.2E-06 9.1E-11 59.1 8.4 63 234-297 10-95 (110)
289 cd05775 Ig_SLAM-CD84_like_N N- 98.3 2.2E-06 4.9E-11 58.8 6.6 79 110-197 3-83 (97)
290 cd05886 Ig1_Nectin-1_like Firs 98.3 6.1E-06 1.3E-10 56.4 8.6 89 113-213 2-98 (99)
291 cd07694 Ig2_CD4 Second immunog 98.3 8.5E-06 1.8E-10 52.9 8.5 74 234-309 11-86 (88)
292 cd05888 Ig1_Nectin-4_like Frst 98.3 1.1E-05 2.4E-10 55.7 9.5 36 273-308 63-99 (100)
293 cd05715 Ig_P0-like Immunoglobu 98.3 6.1E-06 1.3E-10 58.8 8.4 87 104-197 6-102 (116)
294 cd04984 IgV_L_lambda Immunoglo 98.3 2.1E-06 4.6E-11 59.2 5.8 59 22-80 2-84 (98)
295 cd00099 IgV Immunoglobulin var 98.3 3.7E-06 8.1E-11 58.9 7.1 65 234-298 3-91 (105)
296 cd05761 Ig2_Necl-1-4_like Seco 98.3 9.6E-06 2.1E-10 53.7 8.5 66 114-197 2-67 (82)
297 cd07705 Ig2_Necl-1 Second immu 98.3 8.1E-06 1.8E-10 54.0 8.1 56 29-84 2-71 (83)
298 cd05761 Ig2_Necl-1-4_like Seco 98.2 9.5E-06 2.1E-10 53.7 8.1 56 29-84 2-70 (82)
299 PF08205 C2-set_2: CD80-like C 98.2 1E-05 2.2E-10 54.7 8.2 63 237-299 14-86 (89)
300 cd07699 IgC_L Immunoglobulin C 98.2 3.1E-06 6.7E-11 58.3 5.5 74 10-83 1-90 (100)
301 cd05901 Ig_Versican Immunoglob 98.2 1.6E-05 3.5E-10 55.6 8.8 37 273-309 78-114 (117)
302 PHA02987 Ig domain OX-2-like p 98.2 2.6E-05 5.6E-10 58.4 10.1 80 234-313 27-126 (189)
303 cd00098 IgC Immunoglobulin Con 98.2 5.6E-06 1.2E-10 56.8 6.3 61 24-84 11-87 (95)
304 cd05902 Ig_Neurocan Immunoglob 98.2 8.2E-06 1.8E-10 56.9 6.9 87 111-206 2-102 (110)
305 cd05889 Ig1_DNAM-1_like First 98.2 1.7E-05 3.7E-10 53.7 8.2 86 112-205 1-90 (96)
306 cd05884 Ig2_Necl-3 Second immu 98.2 1.9E-05 4.2E-10 52.1 8.3 67 114-197 2-68 (83)
307 cd04982 IgV_TCR_gamma Immunogl 98.2 3.3E-06 7.2E-11 60.3 5.0 64 16-80 4-98 (116)
308 cd05712 Ig_Siglec_N Immunoglob 98.2 9.8E-06 2.1E-10 58.0 7.4 64 17-81 6-102 (119)
309 cd04980 IgV_L_kappa Immunoglob 98.2 1.2E-05 2.6E-10 56.3 7.7 63 234-296 12-93 (106)
310 PF07686 V-set: Immunoglobulin 98.1 2.1E-05 4.6E-10 55.9 8.8 85 106-197 11-101 (114)
311 cd05884 Ig2_Necl-3 Second immu 98.1 1.4E-05 3E-10 52.8 6.9 56 29-84 2-71 (83)
312 cd04982 IgV_TCR_gamma Immunogl 98.1 1.5E-05 3.2E-10 56.9 7.5 62 234-295 10-98 (116)
313 cd07700 IgV_CD8_beta Immunoglo 98.1 1.4E-05 3E-10 56.1 6.5 59 22-80 2-93 (107)
314 cd05769 IgC_TCR_beta T cell re 98.1 1.5E-05 3.2E-10 56.0 6.4 77 10-86 2-96 (115)
315 cd04984 IgV_L_lambda Immunoglo 98.0 2.2E-05 4.7E-10 54.1 6.9 63 234-296 3-85 (98)
316 PF08205 C2-set_2: CD80-like C 98.0 2.6E-05 5.6E-10 52.7 7.0 60 26-85 14-87 (89)
317 cd07699 IgC_L Immunoglobulin C 98.0 1.8E-05 3.8E-10 54.5 6.1 66 234-299 14-91 (100)
318 cd05766 IgC_MHC_II_beta Class 98.0 0.00011 2.4E-09 49.8 9.2 70 12-83 2-84 (94)
319 cd04981 IgV_H Immunoglobulin ( 98.0 4.4E-05 9.5E-10 54.4 7.4 64 16-80 3-97 (117)
320 cd05772 IgC_SIRP Signal-regula 98.0 0.00012 2.5E-09 51.3 9.2 65 234-299 18-94 (111)
321 cd00096 Ig Immunoglobulin doma 97.9 5.7E-05 1.2E-09 48.1 7.1 59 240-298 1-67 (74)
322 cd05767 IgC_MHC_II_alpha Class 97.9 0.00011 2.4E-09 49.7 8.3 69 110-197 14-83 (94)
323 cd05772 IgC_SIRP Signal-regula 97.9 0.00011 2.3E-09 51.5 8.5 61 22-83 17-93 (111)
324 cd07698 IgC_MHC_I_alpha3 Class 97.9 0.00013 2.8E-09 49.6 8.5 70 10-83 2-84 (93)
325 cd05766 IgC_MHC_II_beta Class 97.9 0.00012 2.7E-09 49.6 8.2 70 109-197 12-82 (94)
326 smart00407 IGc1 Immunoglobulin 97.9 0.00012 2.5E-09 47.5 7.6 68 114-197 2-70 (75)
327 cd07706 IgV_TCR_delta Immunogl 97.9 9.3E-05 2E-09 52.8 7.6 63 234-296 11-94 (116)
328 cd05716 Ig_pIgR Immunoglobulin 97.9 0.00013 2.7E-09 50.3 8.1 64 234-297 4-87 (98)
329 cd05720 Ig_CD8_alpha Immunoglo 97.8 2.8E-05 6E-10 54.1 4.6 58 22-80 2-90 (104)
330 cd00096 Ig Immunoglobulin doma 97.8 0.00012 2.6E-09 46.6 7.4 53 29-82 1-66 (74)
331 cd05847 IgC_CH2_IgE CH2 domain 97.8 7.6E-05 1.7E-09 50.5 6.4 61 23-83 11-87 (94)
332 cd05770 IgC_beta2m Class I maj 97.8 0.00016 3.4E-09 48.7 7.8 69 109-197 13-82 (93)
333 TIGR00864 PCC polycystin catio 97.8 0.071 1.5E-06 56.7 31.7 239 22-313 1796-2043(2740)
334 smart00407 IGc1 Immunoglobulin 97.8 0.00013 2.8E-09 47.3 6.8 55 28-82 1-71 (75)
335 PHA03270 envelope glycoprotein 97.8 0.0014 3.1E-08 55.5 14.3 81 174-265 182-265 (466)
336 cd05770 IgC_beta2m Class I maj 97.8 0.0002 4.4E-09 48.2 7.7 70 11-83 2-84 (93)
337 cd05847 IgC_CH2_IgE CH2 domain 97.8 0.00013 2.8E-09 49.4 6.8 65 236-300 13-89 (94)
338 TIGR00864 PCC polycystin catio 97.8 0.051 1.1E-06 57.7 27.4 269 22-370 1619-1901(2740)
339 cd05767 IgC_MHC_II_alpha Class 97.8 0.0003 6.6E-09 47.6 8.5 68 10-82 1-84 (94)
340 cd07700 IgV_CD8_beta Immunoglo 97.8 0.0003 6.4E-09 49.3 8.8 85 108-196 3-93 (107)
341 cd07691 Ig_CD3_gamma_delta Imm 97.8 0.00013 2.8E-09 44.8 5.9 51 235-295 4-54 (69)
342 cd07704 Ig2_Nectin-3-4_like Se 97.8 0.00019 4.1E-09 48.4 7.2 71 13-83 3-85 (97)
343 cd05768 IgC_CH4 CH4 domain (fo 97.7 9.3E-05 2E-09 51.1 5.8 66 234-299 13-93 (102)
344 cd07698 IgC_MHC_I_alpha3 Class 97.7 0.00036 7.8E-09 47.4 8.6 63 237-299 14-85 (93)
345 cd05712 Ig_Siglec_N Immunoglob 97.7 0.00036 7.8E-09 49.9 8.9 85 105-197 8-102 (119)
346 cd05769 IgC_TCR_beta T cell re 97.7 0.00017 3.6E-09 50.8 6.9 70 234-303 15-98 (115)
347 cd07692 Ig_CD3_epsilon Immunog 97.7 9.4E-05 2E-09 45.1 4.8 52 23-80 4-55 (65)
348 cd05768 IgC_CH4 CH4 domain (fo 97.7 0.0001 2.2E-09 50.9 5.6 43 12-54 2-45 (102)
349 cd07692 Ig_CD3_epsilon Immunog 97.7 0.00027 5.9E-09 43.1 6.6 51 235-295 5-55 (65)
350 PHA03273 envelope glycoprotein 97.7 0.002 4.2E-08 55.3 13.7 113 175-298 199-326 (486)
351 PHA03269 envelope glycoprotein 97.7 0.0012 2.7E-08 56.7 12.5 82 174-265 289-373 (566)
352 cd07691 Ig_CD3_gamma_delta Imm 97.7 0.00037 7.9E-09 42.8 6.7 50 25-80 5-54 (69)
353 cd07696 IgC_CH3 CH3 domain (th 97.6 0.00029 6.2E-09 48.0 6.9 63 21-83 9-87 (96)
354 PHA02633 hypothetical protein; 97.6 0.00016 3.4E-09 43.1 4.8 38 57-94 16-53 (63)
355 PF07654 C1-set: Immunoglobuli 97.6 0.00062 1.3E-08 45.1 8.2 69 110-197 7-76 (83)
356 cd07696 IgC_CH3 CH3 domain (th 97.6 0.0003 6.6E-09 47.8 6.7 66 234-299 11-88 (96)
357 cd05720 Ig_CD8_alpha Immunoglo 97.6 0.00038 8.3E-09 48.4 7.2 81 108-196 3-90 (104)
358 cd05719 Ig2_PVR_like Second im 97.6 0.00079 1.7E-08 45.7 8.3 64 238-301 16-86 (95)
359 smart00406 IGv Immunoglobulin 97.6 8.7E-05 1.9E-09 49.0 3.7 22 57-78 60-81 (81)
360 PHA03271 envelope glycoprotein 97.6 0.009 2E-07 50.6 15.6 115 174-298 207-336 (490)
361 smart00406 IGv Immunoglobulin 97.5 0.00057 1.2E-08 45.0 7.0 75 113-194 1-81 (81)
362 PHA02982 hypothetical protein; 97.5 0.0019 4.2E-08 49.0 10.2 111 21-137 34-173 (251)
363 cd07703 Ig2_Nectin-2_like Seco 97.5 0.0012 2.6E-08 44.7 8.1 69 238-306 16-91 (95)
364 cd07697 IgC_TCR_gamma T cell r 97.5 0.00054 1.2E-08 46.4 6.2 60 22-82 12-85 (96)
365 cd05719 Ig2_PVR_like Second im 97.4 0.0013 2.7E-08 44.7 8.0 59 27-85 16-85 (95)
366 cd04981 IgV_H Immunoglobulin ( 97.4 0.0012 2.6E-08 47.0 8.3 87 104-196 5-97 (117)
367 cd05721 IgV_CTLA-4 Immunoglobu 97.4 0.0015 3.2E-08 45.3 8.2 62 16-78 4-93 (115)
368 cd04986 IgC_CH2 CH2 domain (se 97.4 0.00052 1.1E-08 46.6 6.0 64 234-298 16-90 (99)
369 cd04985 IgC_CH1 CH1 domain (fi 97.4 0.0011 2.3E-08 45.1 7.5 61 236-297 15-87 (95)
370 PHA02914 Immunoglobulin-like d 97.4 0.06 1.3E-06 45.6 25.4 171 109-299 277-469 (500)
371 PF07654 C1-set: Immunoglobuli 97.4 0.0013 2.8E-08 43.6 7.7 63 234-299 5-79 (83)
372 cd07703 Ig2_Nectin-2_like Seco 97.4 0.0008 1.7E-08 45.5 6.4 64 28-91 17-91 (95)
373 cd07697 IgC_TCR_gamma T cell r 97.3 0.0016 3.4E-08 44.2 7.3 33 109-141 14-47 (96)
374 cd07704 Ig2_Nectin-3-4_like Se 97.3 0.0021 4.6E-08 43.4 7.8 66 234-299 13-86 (97)
375 PF08204 V-set_CD47: CD47 immu 97.3 0.00057 1.2E-08 48.5 5.2 72 22-94 23-120 (130)
376 cd04985 IgC_CH1 CH1 domain (fi 97.3 0.002 4.3E-08 43.8 7.5 41 11-52 2-43 (95)
377 cd04986 IgC_CH2 CH2 domain (se 97.2 0.00098 2.1E-08 45.3 5.6 43 10-52 3-47 (99)
378 cd07689 Ig2_VCAM-1 Second immu 97.2 0.0021 4.5E-08 43.2 6.5 65 234-298 12-87 (99)
379 PHA02633 hypothetical protein; 97.1 0.0016 3.4E-08 39.0 5.0 41 273-313 17-57 (63)
380 cd05721 IgV_CTLA-4 Immunoglobu 97.1 0.0044 9.5E-08 43.0 7.6 82 105-194 7-93 (115)
381 KOG1480|consensus 97.1 0.00053 1.2E-08 62.2 4.0 76 234-309 141-221 (909)
382 cd07689 Ig2_VCAM-1 Second immu 97.0 0.0043 9.2E-08 41.7 6.9 58 23-81 12-85 (99)
383 KOG1480|consensus 96.9 0.00043 9.2E-09 62.8 2.0 162 10-197 24-205 (909)
384 KOG0613|consensus 96.9 0.0029 6.2E-08 61.2 6.9 116 234-370 346-470 (1205)
385 KOG0613|consensus 96.7 0.015 3.3E-07 56.5 10.1 245 29-299 208-518 (1205)
386 PF08204 V-set_CD47: CD47 immu 96.6 0.0016 3.6E-08 46.2 2.2 76 234-310 24-121 (130)
387 PF11465 Receptor_2B4: Natural 96.5 0.075 1.6E-06 36.1 9.5 38 57-94 69-107 (108)
388 PHA02914 Immunoglobulin-like d 96.4 0.05 1.1E-06 46.0 10.3 119 16-140 269-423 (500)
389 PHA03042 CD47-like protein; Pr 96.4 0.02 4.3E-07 45.8 7.3 73 234-309 28-105 (286)
390 PF03921 ICAM_N: Intercellular 96.2 0.099 2.2E-06 34.8 9.0 81 10-94 3-86 (91)
391 PF02124 Marek_A: Marek's dise 96.1 0.5 1.1E-05 36.9 14.7 139 127-295 7-159 (211)
392 PHA02982 hypothetical protein; 96.1 0.1 2.2E-06 40.1 9.4 130 109-261 37-172 (251)
393 PHA03042 CD47-like protein; Pr 96.0 0.058 1.3E-06 43.2 8.2 69 23-92 28-103 (286)
394 KOG4597|consensus 96.0 0.015 3.2E-07 50.2 5.3 89 222-311 197-294 (560)
395 PF07354 Sp38: Zona-pellucida- 95.8 0.017 3.7E-07 46.0 4.6 47 251-297 12-60 (271)
396 PF05790 C2-set: Immunoglobuli 94.9 0.18 4E-06 32.8 6.6 69 23-93 9-78 (80)
397 PF07354 Sp38: Zona-pellucida- 94.5 0.042 9.1E-07 43.9 3.4 43 39-81 10-59 (271)
398 PF05790 C2-set: Immunoglobuli 93.6 0.59 1.3E-05 30.4 6.9 51 252-308 27-78 (80)
399 KOG4597|consensus 93.4 0.15 3.2E-06 44.4 4.8 73 21-94 206-292 (560)
400 PF06328 Lep_receptor_Ig: Ig-l 93.3 0.48 1E-05 31.6 6.3 64 15-79 8-82 (89)
401 PHA02865 MHC-like TNF binding 92.9 0.48 1E-05 40.0 7.0 22 113-134 216-238 (338)
402 PRK14081 triple tyrosine motif 92.3 10 0.00022 35.8 30.0 277 23-363 203-509 (667)
403 PHA02865 MHC-like TNF binding 92.1 0.42 9.1E-06 40.3 5.7 22 28-49 216-238 (338)
404 PF11465 Receptor_2B4: Natural 92.0 0.5 1.1E-05 32.2 4.9 38 271-308 68-106 (108)
405 PRK14081 triple tyrosine motif 88.2 24 0.00051 33.5 29.5 272 22-364 301-605 (667)
406 PF02124 Marek_A: Marek's dise 87.0 13 0.00029 29.3 13.5 91 43-138 8-117 (211)
407 PHA03052 Hypothetical protein; 86.6 2.5 5.4E-05 26.1 4.6 34 21-54 7-42 (69)
408 PHA03240 envelope glycoprotein 86.6 0.63 1.4E-05 35.8 2.5 54 21-75 33-121 (258)
409 PF06328 Lep_receptor_Ig: Ig-l 86.1 7.9 0.00017 25.8 8.3 60 234-293 15-81 (89)
410 cd05890 Ig2_Nectin-1_like Seco 86.1 3.1 6.6E-05 27.9 5.2 68 240-307 23-97 (98)
411 PHA03052 Hypothetical protein; 86.1 4.3 9.4E-05 25.0 5.4 31 234-264 9-42 (69)
412 PHA03189 UL14 tegument protein 84.6 7.6 0.00017 32.1 7.8 20 281-300 140-159 (348)
413 cd05890 Ig2_Nectin-1_like Seco 82.4 9.4 0.0002 25.6 6.2 64 29-92 23-97 (98)
414 PHA03189 UL14 tegument protein 80.9 14 0.00029 30.8 7.9 26 60-86 135-160 (348)
415 PF02480 Herpes_gE: Alphaherpe 79.9 29 0.00064 31.3 10.5 38 57-94 87-125 (439)
416 PHA03282 envelope glycoprotein 79.5 11 0.00023 33.4 7.3 25 57-81 331-355 (540)
417 PF03921 ICAM_N: Intercellular 79.5 16 0.00035 24.5 10.0 74 234-313 15-90 (91)
418 PHA03112 IL-18 binding protein 79.4 10 0.00022 27.6 6.1 28 23-50 35-63 (141)
419 PF11049 KSHV_K1: Glycoprotein 79.2 4.7 0.0001 24.6 3.7 55 30-94 2-56 (71)
420 PHA03286 envelope glycoprotein 77.5 52 0.0011 29.3 13.8 81 174-258 127-225 (492)
421 PHA02935 Hypothetical protein; 76.4 13 0.00029 28.5 6.3 78 44-123 69-167 (349)
422 PHA03283 envelope glycoprotein 75.6 17 0.00037 32.8 7.6 94 273-371 133-232 (542)
423 PHA03283 envelope glycoprotein 70.1 40 0.00087 30.6 8.6 79 57-135 132-235 (542)
424 KOG1026|consensus 69.9 14 0.0003 35.4 6.2 157 107-312 203-366 (774)
425 PF06832 BiPBP_C: Penicillin-B 69.6 30 0.00065 22.9 9.9 54 26-86 31-85 (89)
426 PF02010 REJ: REJ domain; Int 69.4 9.9 0.00021 34.3 5.2 80 234-313 205-302 (440)
427 PHA03112 IL-18 binding protein 68.6 44 0.00095 24.5 7.1 27 234-260 35-63 (141)
428 PHA03286 envelope glycoprotein 65.3 42 0.0009 29.9 7.6 89 273-371 126-224 (492)
429 PF11141 DUF2914: Protein of u 64.6 32 0.00069 21.4 7.8 52 42-93 7-65 (66)
430 PF01688 Herpes_gI: Alphaherpe 60.3 24 0.00053 26.5 4.8 29 57-85 122-150 (161)
431 PF06832 BiPBP_C: Penicillin-B 60.2 47 0.001 22.0 8.6 56 239-302 31-86 (89)
432 PF02480 Herpes_gE: Alphaherpe 57.4 5.2 0.00011 35.9 1.1 91 272-371 87-188 (439)
433 PF02440 Adeno_E3_CR1: Adenovi 57.2 22 0.00047 21.9 3.4 21 23-48 2-22 (63)
434 PHA03240 envelope glycoprotein 55.9 63 0.0014 25.4 6.3 21 172-193 103-123 (258)
435 PHA03281 envelope glycoprotein 48.6 1.1E+02 0.0024 28.1 7.6 90 273-371 297-393 (642)
436 PHA03281 envelope glycoprotein 46.6 2E+02 0.0043 26.6 8.8 79 57-135 296-396 (642)
437 PHA03282 envelope glycoprotein 45.2 60 0.0013 29.1 5.4 44 267-310 117-162 (540)
438 KOG1026|consensus 44.5 16 0.00035 35.1 2.1 74 234-313 204-277 (774)
439 PF03174 CHB_HEX_C: Chitobiase 44.3 47 0.001 21.1 3.7 64 16-86 6-69 (75)
440 COG5475 Uncharacterized small 43.7 52 0.0011 19.5 3.3 27 275-303 19-45 (60)
441 KOG0200|consensus 40.1 3.4E+02 0.0075 26.0 12.1 24 57-80 11-34 (609)
442 PF01688 Herpes_gI: Alphaherpe 37.6 86 0.0019 23.7 4.6 34 275-308 125-158 (161)
443 smart00635 BID_2 Bacterial Ig- 37.2 1.2E+02 0.0025 19.7 5.6 42 12-54 4-47 (81)
444 KOG0200|consensus 35.7 3.5E+02 0.0076 26.0 9.5 111 174-300 13-143 (609)
445 PHA03290 envelope glycoprotein 35.5 92 0.002 26.6 4.9 38 57-94 127-166 (357)
446 PHA03289 envelope glycoprotein 34.9 97 0.0021 26.3 4.9 27 57-83 120-146 (352)
447 PF15096 G6B: G6B family 33.0 22 0.00048 27.1 0.9 26 66-94 81-106 (224)
448 PHA03292 envelope glycoprotein 32.7 1E+02 0.0022 26.9 4.7 38 57-94 126-165 (413)
449 smart00089 PKD Repeats in poly 32.1 1.3E+02 0.0029 18.9 9.3 66 23-93 11-78 (79)
450 PF12988 DUF3872: Domain of un 31.9 2E+02 0.0044 21.0 8.5 45 3-48 25-73 (137)
451 PF09085 Adhes-Ig_like: Adhesi 28.8 1.5E+02 0.0033 20.0 4.1 41 11-54 4-48 (110)
452 PF00801 PKD: PKD domain; Int 27.8 1.5E+02 0.0033 18.2 8.3 52 22-79 7-59 (69)
453 PHA03290 envelope glycoprotein 27.1 1.6E+02 0.0035 25.2 4.9 39 275-313 130-168 (357)
454 PHA03291 envelope glycoprotein 22.7 1.9E+02 0.004 25.1 4.6 29 57-85 127-155 (401)
455 TIGR03096 nitroso_cyanin nitro 20.9 3.5E+02 0.0075 19.9 6.5 65 11-79 54-121 (135)
456 COG4953 PbpC Membrane carboxyp 20.7 3.8E+02 0.0083 25.8 6.5 52 29-85 672-724 (733)
No 1
>KOG3513|consensus
Probab=100.00 E-value=2.4e-41 Score=306.01 Aligned_cols=303 Identities=27% Similarity=0.388 Sum_probs=256.1
Q ss_pred cceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCE-EEeeC-----CeeEEEEccCCcCCCeEEEEEEEcCCC
Q psy14542 10 SLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGL-VLRRN-----SDEVLVLDRVQREDAGMYQCHVSADDD 83 (371)
Q Consensus 10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~-~~~~~-----~~~~l~i~~~~~~d~G~Y~C~~~~~~~ 83 (371)
+|.+.+.+........|+.+.|.| .+.++|.+++.|.|.+. .+... ....|.|.+++.+|+|.|+|.+.|..|
T Consensus 240 ~P~i~~~~p~~~~a~~G~~v~LEC-fA~G~P~P~i~W~k~~g~~~~~r~~~~~~~~vL~I~nv~~~D~G~Y~C~AeN~~G 318 (1051)
T KOG3513|consen 240 APKILVPFPETETALKGQSVKLEC-FALGNPTPQIKWRKVDGKPPPRRATYSNYGKVLKIPNVQYEDAGEYECIAENSRG 318 (1051)
T ss_pred CCccccCCCCcccccCCCeEEEEE-EecCCCCCcEEEEeCCCCCCCcceeeeccccEEEecccCcCCCeEEEEEEecccc
Confidence 455666555457899999999999 88999999999999766 33322 677999999999999999999999999
Q ss_pred CeEEEEEEEEecceeeEecCCceee-ecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEE
Q psy14542 84 SAQMSAQVILGGELVEIASSNQVVV-DVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCH 162 (371)
Q Consensus 84 ~~~~~~~l~v~~~~~~~~~~~~~~~-~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~ 162 (371)
.......|.|. .+|.+...+.+.. ..|+++.|.|.+.|.|. +.|+|++||.++....+
T Consensus 319 ~~~~~~~v~v~-a~P~w~~~~~d~~~~~gs~v~~eC~a~g~P~-p~v~WlkNg~pl~~~~r------------------- 377 (1051)
T KOG3513|consen 319 SATHSGHVTVY-APPYWLQKPQDTEADTGSNVTLECKASGKPN-PTVKWLKNGEPLEPAER------------------- 377 (1051)
T ss_pred cceeeEEEEEe-cCchhhcccceeEecCCCCeEEEEEecCCCC-CceEEeeCCeecCccCC-------------------
Confidence 88999999999 8888888887776 89999999999999888 99999999999885532
Q ss_pred EeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeee-eeeecCCeEE
Q psy14542 163 IEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRI-LNVKKDESVI 241 (371)
Q Consensus 163 ~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~-~~~~~g~~~~ 241 (371)
+.++. ..++.|+|+++...| +|.|.|.|.|. .|....++ .|.|.. .+|.+...+... ..+..|..+.
T Consensus 378 --~~~~~-i~~g~L~is~v~~~d-sg~YQC~A~Nk-~G~i~anA---~L~V~a----~~P~f~~~p~~~~~~a~~g~~v~ 445 (1051)
T KOG3513|consen 378 --DPRYK-IDDGTLIISNVQESD-SGVYQCIAENK-YGTIYANA---ELKVLA----SAPVFPLNPVERKVMAVVGGTVT 445 (1051)
T ss_pred --CcceE-EeCCEEEEEeccccc-CeEEEeeeecc-cceEeeee---EEEEEc----cCCCCCCCccceEEEEEeCCeEE
Confidence 01122 223789999999999 99999999999 99988888 999985 346665554433 2388899999
Q ss_pred EEEEeecCCCCceEEEeCCcccccCCceEE-ecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEecCcccccccce
Q psy14542 242 LPCSAQGNPLPTIKWYKQDSPVEESDRIQR-IGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGE 320 (371)
Q Consensus 242 l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~~~~~~~ 320 (371)
|.|...+.|.|.++|.++++.+..++|+.. .+++|.|.+++.+|+|.|+|.|+|..|+...+..|.|.++++
T Consensus 446 i~C~~~asP~p~~~W~k~~~~~~~~~r~~i~edGtL~I~n~t~~DaG~YtC~A~N~~G~a~~~~~L~Vkd~tr------- 518 (1051)
T KOG3513|consen 446 IDCKPFASPKPKVSWLKGGEKLLQSGRIRILEDGTLEISNVTRSDAGKYTCVAENKLGKAESTGNLIVKDATR------- 518 (1051)
T ss_pred EeeccCCCCcceEEEEcCCcccccCceEEECCCCcEEecccCcccCcEEEEEEEcccCccceEEEEEEecCce-------
Confidence 999999999999999999997788888885 789999999999999999999999999999999999999999
Q ss_pred EEEEeeeeccccccccccccccceeeeeecCCeEEEeeeeecCCCC--ccccC
Q psy14542 321 LIIHQVDEKNKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLP--TIKYR 371 (371)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p--~i~W~ 371 (371)
|. ..|... .+..|+.++|.|.+..++.. .|.|.
T Consensus 519 --i~--~~P~~~--------------~v~~g~~v~l~Ce~shD~~ld~~f~W~ 553 (1051)
T KOG3513|consen 519 --IT--LAPSNT--------------DVKVGESVTLTCEASHDPSLDITFTWK 553 (1051)
T ss_pred --EE--eccchh--------------hhccCceEEEEeecccCCCcceEEEEE
Confidence 76 244432 68899999999999977664 67774
No 2
>KOG3513|consensus
Probab=100.00 E-value=2.3e-37 Score=280.32 Aligned_cols=325 Identities=23% Similarity=0.364 Sum_probs=259.9
Q ss_pred ceEEEeCCCcEEEeccCc--EEEEEEecCCCCCCeeEEEeCCEEEeeC-------CeeEEEEccCC-cCCCeEEEEEEEc
Q psy14542 11 LSIEMSPSGQVVVDVGHR--IELHCRVSPKRLSSAKAWLKDGLVLRRN-------SDEVLVLDRVQ-REDAGMYQCHVSA 80 (371)
Q Consensus 11 ~~~~~~p~~~~~~~~G~~--v~l~C~~~~~~~~~~~~W~~~~~~~~~~-------~~~~l~i~~~~-~~d~G~Y~C~~~~ 80 (371)
|.+...|...+....-+. +.|.| .+.++|.+++.|+|||...... ..++|.|.+.. ..|.|.|+|.|.|
T Consensus 40 P~f~~q~~~~~~~~~~~~~~v~l~C-~A~G~P~Psy~W~kng~~~d~~~~~~~~~~~G~lvI~~p~~~~d~G~YqC~AsN 118 (1051)
T KOG3513|consen 40 PVFVEQPNDVIVPFPSDDSSVTLNC-EANGNPEPSYRWTKNGTEFDPTEYPRVSVLGGTLVITNPDAALDQGIYQCFASN 118 (1051)
T ss_pred ceeeecCCceEEecccCCccEEEEE-EecCCCCceeEEEECCeecccccccceeeecCceEecCCcchhhcceeEEEeec
Confidence 566666665344444444 99999 6788999999999999877655 56788888888 8899999999999
Q ss_pred CCCCe-EEEEEEEEecceeeEecC--CceeeecCCcEEEEEEecCCCCCceEEEeeCCEE---------eeeCCeeEEEE
Q psy14542 81 DDDSA-QMSAQVILGGELVEIASS--NQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLV---------LRRNSDEVLVL 148 (371)
Q Consensus 81 ~~~~~-~~~~~l~v~~~~~~~~~~--~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~---------~~~~~~~~~~~ 148 (371)
..|.. +..+.|... ..+.+... ....+.+|+.+.|.|......+.+.+.|..+..+ ...+....|.+
T Consensus 119 ~~Gta~S~~~~l~~~-~i~~F~~e~~~~v~v~eG~~~~L~C~pP~~~P~l~~~W~~~~~~~~~~~~~~r~~~~~~G~Lyf 197 (1051)
T KOG3513|consen 119 KLGTAVSREARLQFG-FIPKFKKEERSPVEVEEGDGVVLPCNPPAHFPPLRYYWMLNEFPHFVQIDNRRVFSQENGNLYF 197 (1051)
T ss_pred ccceeeccceeeccc-ccccCccccCCcEEEEeCCceEEeCCCCCCCCCccEEehhccCCcccccCcceeEecccceEEE
Confidence 98876 345666555 33334322 3344589999999999865544499999875432 22233458899
Q ss_pred cccCcCCCeeEEEEEe----------------------------------------------------------------
Q psy14542 149 DRVQREDAGMYQCHIE---------------------------------------------------------------- 164 (371)
Q Consensus 149 ~~~~~~~~g~y~~~~~---------------------------------------------------------------- 164 (371)
.++..+|.+.|.|.+.
T Consensus 198 s~V~~~D~~~Y~C~a~~~~~~~~v~~~~~~L~~~~~~~~~~~~P~i~~~~p~~~~a~~G~~v~LECfA~G~P~P~i~W~k 277 (1051)
T KOG3513|consen 198 SNVETSDFGNYICSATFPSTQTIVQGPPFPLIVRSNNVMREYAPKILVPFPETETALKGQSVKLECFALGNPTPQIKWRK 277 (1051)
T ss_pred eecchhhcCceEEEEEchhhcccccCCceeEEEcccccccccCCccccCCCCcccccCCCeEEEEEEecCCCCCcEEEEe
Confidence 9999999999996655
Q ss_pred -CC------ceeEeccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecC
Q psy14542 165 -DG------KYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKD 237 (371)
Q Consensus 165 -~~------~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g 237 (371)
++ .........|.|.+++.+| .|.|.|.+.|. .|...... .+.|. .+|.+...+.+.. +..|
T Consensus 278 ~~g~~~~~r~~~~~~~~vL~I~nv~~~D-~G~Y~C~AeN~-~G~~~~~~---~v~v~-----a~P~w~~~~~d~~-~~~g 346 (1051)
T KOG3513|consen 278 VDGKPPPRRATYSNYGKVLKIPNVQYED-AGEYECIAENS-RGSATHSG---HVTVY-----APPYWLQKPQDTE-ADTG 346 (1051)
T ss_pred CCCCCCCcceeeeccccEEEecccCcCC-CeEEEEEEecc-cccceeeE---EEEEe-----cCchhhcccceeE-ecCC
Confidence 11 1111123579999999999 99999999999 88777777 88888 8899998888888 9999
Q ss_pred CeEEEEEEeecCCCCceEEEeCCcccccCCc---eEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEecC-cc
Q psy14542 238 ESVILPCSAQGNPLPTIKWYKQDSPVEESDR---IQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHG-KY 313 (371)
Q Consensus 238 ~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~---~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~-p~ 313 (371)
+.+.|.|.+.|.|.|+|+|++||.++....+ +....+.|.|.++...|+|.|.|.|+|.+|.....+.|.|... |.
T Consensus 347 s~v~~eC~a~g~P~p~v~WlkNg~pl~~~~r~~~~~i~~g~L~is~v~~~dsg~YQC~A~Nk~G~i~anA~L~V~a~~P~ 426 (1051)
T KOG3513|consen 347 SNVTLECKASGKPNPTVKWLKNGEPLEPAERDPRYKIDDGTLIISNVQESDSGVYQCIAENKYGTIYANAELKVLASAPV 426 (1051)
T ss_pred CCeEEEEEecCCCCCceEEeeCCeecCccCCCcceEEeCCEEEEEecccccCeEEEeeeecccceEeeeeEEEEEccCCC
Confidence 9999999999999999999999999987777 7889999999999999999999999999999999999999876 44
Q ss_pred cccccceEEEEeeeeccccccccccccccceeeeeecCCeEEEeeeeecCCCCccccC
Q psy14542 314 HMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKYR 371 (371)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~ 371 (371)
+. ..|..... .+..|..+.|.|...+.|.|.++|.
T Consensus 427 ---------f~--~~p~~~~~------------~a~~g~~v~i~C~~~asP~p~~~W~ 461 (1051)
T KOG3513|consen 427 ---------FP--LNPVERKV------------MAVVGGTVTIDCKPFASPKPKVSWL 461 (1051)
T ss_pred ---------CC--CCccceEE------------EEEeCCeEEEeeccCCCCcceEEEE
Confidence 33 44444333 6889999999999999999999995
No 3
>KOG4221|consensus
Probab=100.00 E-value=3.5e-33 Score=252.57 Aligned_cols=304 Identities=25% Similarity=0.410 Sum_probs=236.6
Q ss_pred ccceEEEeCCCcEEEeccCcEEEEEEecCCC-CCCeeEEEeCCEEEeeC--------CeeEEEEccCCc-----CCCeEE
Q psy14542 9 SSLSIEMSPSGQVVVDVGHRIELHCRVSPKR-LSSAKAWLKDGLVLRRN--------SDEVLVLDRVQR-----EDAGMY 74 (371)
Q Consensus 9 ~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~-~~~~~~W~~~~~~~~~~--------~~~~l~i~~~~~-----~d~G~Y 74 (371)
.++.+.++|++ ..+|.++.|.|...... +...+.|.+||..+... .+++|.|.++.. -|+|.|
T Consensus 40 ~~~~f~~ep~d---~~~~~svlLecs~~~~~~~~~~i~wkkDg~~l~e~~d~~~~~LsNgSl~i~~v~~~kh~~~~eg~Y 116 (1381)
T KOG4221|consen 40 TPLQFLLEPSD---AMEGSSVLLECSAYAAGGTSVKIEWKKDGSQLNEVYDDRRQLLSNGSLYISSVLASKHNKVDEGVY 116 (1381)
T ss_pred CcceEEecccc---cccccceEEeccccccCCCCeeEEEccCchhhhhhhhhHHhhccCCceeEeeecccccccccCceE
Confidence 46778899987 38999999999654433 36789999999877665 788999999988 789999
Q ss_pred EEEEEcC-CCCe-EEEEEEEEecceeeEecC-CceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEccc
Q psy14542 75 QCHVSAD-DDSA-QMSAQVILGGELVEIASS-NQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRV 151 (371)
Q Consensus 75 ~C~~~~~-~~~~-~~~~~l~v~~~~~~~~~~-~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~ 151 (371)
+|.++.. .|.. +.++.|.+. ..+.+... ....+..|+++.|.|.+.+.+. +.+.|.++..++....
T Consensus 117 qc~atv~~~gsi~Sr~a~v~~a-~~~~f~~~~~~~t~~~g~ta~f~c~vn~e~~-p~i~w~kn~~pl~~~~--------- 185 (1381)
T KOG4221|consen 117 QCLATVEDVGSILSRTAKVALA-GLADFALQPESTTLLYGQTALFSCEVNAEPV-PTIMWLKNDQPLPLDS--------- 185 (1381)
T ss_pred EEEEEccccceeecceEEEEec-ccCccccCccceeEecCCcEEEEEEEcCccC-ceeEEecccccccCCC---------
Confidence 9999965 3332 556777776 44444444 4445589999999999998776 7899999999776642
Q ss_pred CcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchh-ccccceeeeeee
Q psy14542 152 QREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKR-LLSAAKMFEKHR 230 (371)
Q Consensus 152 ~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~-~~~p~~~~~~~~ 230 (371)
++....++.|.|.++...| .|.|+|.+.+.......... .|+|.-... ...-.|...+..
T Consensus 186 ---------------r~i~lpsG~L~I~~~qp~d-~g~yrc~vt~g~~~r~S~~a---~ltv~s~~~~~~~~~fl~~p~~ 246 (1381)
T KOG4221|consen 186 ---------------RVIVLPSGALEISGLQPSD-TGEYRCVVTGGASQRTSNEA---ELTVLSDPGALNKLVFLDEPSN 246 (1381)
T ss_pred ---------------cEEEcCCCcEEecccccCC-CceEEEEEecCCcCCcccee---EEEecCCcccccceeeecCCCc
Confidence 5556667899999999999 99999999987332333333 677662211 122234455555
Q ss_pred eeeeecCCeEEEEEEeecCCCCceEEEeCCcccccCC-ceE-EecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEE
Q psy14542 231 ILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESD-RIQ-RIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQY 308 (371)
Q Consensus 231 ~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~-~~~-~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 308 (371)
.. +..|+++.|.|.+.+.|.|.|.|.+|+..+...+ ++. ...+.|.|.+++..|+|.|+|+|+|..-...+.+.|.|
T Consensus 247 ~~-v~~g~~v~leCvvs~~p~p~v~Wlrng~~i~~ds~rivl~g~~slliS~a~~~dSg~YtC~Atn~~D~idasaev~V 325 (1381)
T KOG4221|consen 247 AV-VVEGDDVVLECVVSGVPKPSVKWLRNGEKISVDSYRIVLVGGSSLLISNATDDDSGKYTCRATNTNDSIDASAEVTV 325 (1381)
T ss_pred cc-cccCCcEEEEEEecCCCCCceEEeeCCeeeeecceEEEEecccceEEeccccccCceEEEEecCCCcccccceEEEE
Confidence 55 9999999999999999999999999999887664 333 34678999999999999999999997777888888999
Q ss_pred ecCcccccccceEEEEeeeeccccccccccccccceeeeeecCCeEEEeeeeecCCCCccccC
Q psy14542 309 AHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKYR 371 (371)
Q Consensus 309 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~ 371 (371)
..+|. +. ..|..+.+.++.++.|.|.+.|.|.|.+.|+
T Consensus 326 ~a~P~---------~~----------------~~p~~l~A~e~~die~ec~~~g~p~p~v~w~ 363 (1381)
T KOG4221|consen 326 LAPPG---------FT----------------KAPTTLVAHESMDIEFECPVSGKPIPTVRWY 363 (1381)
T ss_pred EcCCC---------CC----------------CCCcceeeeeccceeEeCCCCCCCcceEEEE
Confidence 98888 44 2233347888999999999999999999996
No 4
>KOG4194|consensus
Probab=100.00 E-value=1.4e-31 Score=226.60 Aligned_cols=271 Identities=23% Similarity=0.387 Sum_probs=220.4
Q ss_pred cccceEEEeCCCcEEEeccCcEEEEEEecCC-CCCCeeEEEeCCEEEeeC----------------------CeeEEEEc
Q psy14542 8 KSSLSIEMSPSGQVVVDVGHRIELHCRVSPK-RLSSAKAWLKDGLVLRRN----------------------SDEVLVLD 64 (371)
Q Consensus 8 ~~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~-~~~~~~~W~~~~~~~~~~----------------------~~~~l~i~ 64 (371)
.++|++...|.. +....|++++|+|.+.+. ..+.++.|.++++..... ...-|.+.
T Consensus 501 spkpqI~~qPe~-~~al~g~nirftC~a~sssasplsi~WR~dnevq~rv~ved~a~~~~q~r~~~~~e~~~~~~~L~L~ 579 (873)
T KOG4194|consen 501 SPKPQIVTQPET-VSALIGENIRFTCNAYSSSASPLSIEWRKDNEVQPRVDVEDFATFLSQNRNGTFGEREEYTAILHLD 579 (873)
T ss_pred CCCcceecCchH-hhhhhccceEEEEEeccCCCCCceeEeeeccccCcccchhcchhhhhhhccCccchhhhhhheeeee
Confidence 457888888888 888999999999976553 334579999987744333 34568999
Q ss_pred cCCcCCCeEEEEEEEcCCCCe-EEEEEEEEecceeeEecCCceee-ecCCcEEEEEEecCCCCCceEEEeeCCEE-eeeC
Q psy14542 65 RVQREDAGMYQCHVSADDDSA-QMSAQVILGGELVEIASSNQVVV-DVGHRIELHCRVSPKRLSSAKAWLKDGLV-LRRN 141 (371)
Q Consensus 65 ~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~v~~~~~~~~~~~~~~~-~~g~~v~l~C~~~~~~~~~~v~W~~~~~~-~~~~ 141 (371)
+++..|+|.|+|+++|..|+. +..+.|+|. ..|.+...|.+.. ..|+...|.|.+.|.|. +.+.|.|+|.. .+..
T Consensus 580 nVt~td~grYQCVvtN~FGStysqk~KltV~-~~PsFtktP~dltl~tg~mArl~CaAtG~P~-PeIawqkdggtdFPAA 657 (873)
T KOG4194|consen 580 NVTFTDEGRYQCVVTNHFGSTYSQKAKLTVN-QAPSFTKTPEDLTLRTGQMARLECAATGHPR-PEIAWQKDGGTDFPAA 657 (873)
T ss_pred eeecccCceEEEEEecccCcchhheeEEEee-ccCccccCcccceeecccceeeeeeccCCCC-cceeehhcCCCCCchh
Confidence 999999999999999999986 577899998 6777777776655 89999999999999998 99999998765 3332
Q ss_pred CeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccc
Q psy14542 142 SDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLS 221 (371)
Q Consensus 142 ~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~ 221 (371)
....++ .+..+-.+.|.++..+| .|.|+|.|.|. .|..+.+. .+.|. ..
T Consensus 658 ~eRRl~---------------------Vmpedd~f~Itnvk~eD-~GiYtC~A~n~-AG~isanA---tL~V~-----e~ 706 (873)
T KOG4194|consen 658 RERRLH---------------------VMPEDDVFFITNVKIED-QGIYTCTAQNV-AGQISANA---TLTVL-----ET 706 (873)
T ss_pred hhheee---------------------ecCCCCEEEEecccccc-cceeEEeeecc-ccceeece---EEEEe-----cC
Confidence 221111 12223568899999999 99999999999 89888888 99999 66
Q ss_pred cceeeeeeeeeeeecCCeEEEEEEeecCCC-CceEEEeCCcccccCCceE--EecceEEEeccCCCCCeEEEEEEEcCCC
Q psy14542 222 AAKMFEKHRILNVKKDESVILPCSAQGNPL-PTIKWYKQDSPVEESDRIQ--RIGSSLSISHVEESDSGVWNCVANNSEG 298 (371)
Q Consensus 222 p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~-~~v~W~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~Y~C~a~n~~g 298 (371)
|.+........ +..|+++.|.|.+.+.|. |.+.|+|+++++....+.. ..+.-|.+.....+|+|.|+|...|..|
T Consensus 707 p~f~~PL~~~~-V~~get~vlqC~a~~~~a~pr~~W~k~d~pil~t~rh~f~d~dQllvv~~~~~~daG~yTcem~~~~~ 785 (873)
T KOG4194|consen 707 PSFSIPLEDQL-VVVGETLVLQCLAEGAPADPRLEWFKEDKPILITERHTFPDGDQLLVVKENLVEDAGIYTCEMSNTLG 785 (873)
T ss_pred CcccccccceE-EEecceEEEEEecCCCCCCccccccCCCCceEEeecccCCCCCeEEEEEehhhhhcceEEEEEEeecc
Confidence 67766677777 999999999999999887 9999999999887776554 3345688899999999999999999999
Q ss_pred CceeEEEEEEecCcc
Q psy14542 299 QDKMQLFIQYAHGKY 313 (371)
Q Consensus 299 ~~~~~~~l~v~~~p~ 313 (371)
.....+.+.+...+.
T Consensus 786 ~~~~~i~l~~~~~~~ 800 (873)
T KOG4194|consen 786 TERIHICLLVYQKKK 800 (873)
T ss_pred ceeeEEEEEEeecCC
Confidence 998888887776665
No 5
>KOG4222|consensus
Probab=100.00 E-value=9.3e-32 Score=242.09 Aligned_cols=304 Identities=24% Similarity=0.375 Sum_probs=238.6
Q ss_pred ccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC---------CeeEEEEccC-----CcCCCeEE
Q psy14542 9 SSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN---------SDEVLVLDRV-----QREDAGMY 74 (371)
Q Consensus 9 ~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~---------~~~~l~i~~~-----~~~d~G~Y 74 (371)
.+|.+...|.. ..+..|++++|.| -..+.|.++|+|||+|...... ..++|.+..+ ...|.|.|
T Consensus 30 ~~p~iiehp~d-~vvs~~~patlnc-~asG~ppPti~w~k~G~~~~~~e~~shR~~lp~gsLf~l~~ahg~~a~~d~G~y 107 (1281)
T KOG4222|consen 30 QPPRIIEHPHD-LVVSKGEPATLNC-KASGDPPPTIEWYKDGENVFKGEPGSHRFLLPDGSLFLLRLAHGKKAGHDHGVY 107 (1281)
T ss_pred CCCceEecchh-hhccCCCCceeec-CCCCCCCCceecccCCcccCCCCCCCcceecCCccEEEEecccCCcccCCCcee
Confidence 46888889988 8899999999999 5678889999999999644433 4445554432 12389999
Q ss_pred EEEEEcCCCCe-EEEEEEEEecceeeEecCCceee-ecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccC
Q psy14542 75 QCHVSADDDSA-QMSAQVILGGELVEIASSNQVVV-DVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQ 152 (371)
Q Consensus 75 ~C~~~~~~~~~-~~~~~l~v~~~~~~~~~~~~~~~-~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~ 152 (371)
.|++.|..+.. +....|.+...+..+...+.... ..|+.+.|.|.-....+.+.+.|.|+|+++....
T Consensus 108 ~cvasn~~g~avSr~a~L~vavlrddfrv~prd~~~a~ge~avlEcgpP~ghpeptvSw~Kdg~pl~~~~---------- 177 (1281)
T KOG4222|consen 108 SCVASNRLGEAVSRGASLIVAVLRDDFRVSPRDVQAAVGEEAVLECGPPRGHPEPTVSWVKDGKPLDHYD---------- 177 (1281)
T ss_pred EeeecCccceeeecCceEEEEEechhcccCcccccccccceeEEeccCCCCCCCCcceeecCCCcccccc----------
Confidence 99999988875 33455555534555555555544 7899999999985444448999999999887322
Q ss_pred cCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeee
Q psy14542 153 REDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRIL 232 (371)
Q Consensus 153 ~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~ 232 (371)
...+.+...+.|.|.+++..| .|.|.|++.|-......... .+.|. .+|.+...+....
T Consensus 178 ------------~~~~~lisgG~LlIsnvrksD-~GtY~CVatNmvG~ReS~~A---~lsv~-----e~P~f~~rp~~~~ 236 (1281)
T KOG4222|consen 178 ------------VPIIALISGGNLLISNVRKSD-EGTYACVATNMVGERESIPA---RLSVQ-----EKPWFWKRPKDLA 236 (1281)
T ss_pred ------------ceeEEEecCCcEEEeccccCC-Cceeeeeecccccccccccc---eeeec-----cCCccccccccce
Confidence 113344455889999999999 99999999998333444344 88888 7889988888888
Q ss_pred eeecCCeEEEEEEeecCCCCceEEEeCCcccccCCceE-EecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEecC
Q psy14542 233 NVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQ-RIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHG 311 (371)
Q Consensus 233 ~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~ 311 (371)
+..|..+.+.|.+.|+|.|.+.|.+++..+....... ..+.+|.|.++...|.|.|.|.+.|..|.......+.|+.+
T Consensus 237 -v~~g~~~~f~c~v~GdP~P~Vrwkk~~~~~P~~ry~i~~d~qtl~i~r~tp~deg~y~C~a~n~vG~l~asa~ltV~ap 315 (1281)
T KOG4222|consen 237 -VLVGAAAEFDCRVGGDPQPTVRWKKDDPSLPRSRYSILDDTQTLRIDRVTPTDEGTYVCPAENLVGGLEASATLTVQAP 315 (1281)
T ss_pred -eecccccccccccCCCCCCceeeeccCCCCCccceeeeeccccccccccCCCcccceeeeccccccccccccceEEecC
Confidence 9999999999999999999999999887776554333 34478999999999999999999999999999999999999
Q ss_pred cccccccceEEEEeeeeccccccccccccccceeeeeecCCeEEEeeeeecCCCCccccC
Q psy14542 312 KYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKYR 371 (371)
Q Consensus 312 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~ 371 (371)
|. +. .-|.. ..+..|..++|.|.+.|+|+|.+.|.
T Consensus 316 P~---------f~--kkp~d--------------q~v~lg~~vt~pc~~~gnP~PavfW~ 350 (1281)
T KOG4222|consen 316 PS---------FG--KKPRD--------------QKVALGGTVTFPCETLGNPPPAVFWL 350 (1281)
T ss_pred cc---------cc--cccCc--------------cccccCceEEeeeecCCCCCcceEEe
Confidence 98 54 22222 26778999999999999999999994
No 6
>KOG4221|consensus
Probab=99.98 E-value=1.5e-30 Score=235.66 Aligned_cols=274 Identities=20% Similarity=0.391 Sum_probs=221.6
Q ss_pred eeEEecccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC------CeeEEEEccCCcCCCeEEEE
Q psy14542 3 LFIQVKSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN------SDEVLVLDRVQREDAGMYQC 76 (371)
Q Consensus 3 ~~~~v~~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~------~~~~l~i~~~~~~d~G~Y~C 76 (371)
..|.++..+.+...+.+ ..+..|+++.|.|.+ ++.+.+.+.|.+|+..+... .++.|.|.+++..|.|.|+|
T Consensus 133 a~v~~a~~~~f~~~~~~-~t~~~g~ta~f~c~v-n~e~~p~i~w~kn~~pl~~~~r~i~lpsG~L~I~~~qp~d~g~yrc 210 (1381)
T KOG4221|consen 133 AKVALAGLADFALQPES-TTLLYGQTALFSCEV-NAEPVPTIMWLKNDQPLPLDSRVIVLPSGALEISGLQPSDTGEYRC 210 (1381)
T ss_pred EEEEecccCccccCccc-eeEecCCcEEEEEEE-cCccCceeEEecccccccCCCcEEEcCCCcEEecccccCCCceEEE
Confidence 34556777888888888 899999999999965 45778899999998866544 67889999999999999999
Q ss_pred EEEcCCCCe-EEEEEEEEecce-----eeEecCCceee-ecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEc
Q psy14542 77 HVSADDDSA-QMSAQVILGGEL-----VEIASSNQVVV-DVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLD 149 (371)
Q Consensus 77 ~~~~~~~~~-~~~~~l~v~~~~-----~~~~~~~~~~~-~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~ 149 (371)
.+.+...+. +....|+|...+ ..|...+...+ .+|+++.|.|.+.+.+. +.|.|.+++..+....
T Consensus 211 ~vt~g~~~r~S~~a~ltv~s~~~~~~~~~fl~~p~~~~v~~g~~v~leCvvs~~p~-p~v~Wlrng~~i~~ds------- 282 (1381)
T KOG4221|consen 211 VVTGGASQRTSNEAELTVLSDPGALNKLVFLDEPSNAVVVEGDDVVLECVVSGVPK-PSVKWLRNGEKISVDS------- 282 (1381)
T ss_pred EEecCCcCCccceeEEEecCCcccccceeeecCCCccccccCCcEEEEEEecCCCC-CceEEeeCCeeeeecc-------
Confidence 999876543 556677776211 12344444444 89999999999999998 9999999999887753
Q ss_pred ccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeee
Q psy14542 150 RVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKH 229 (371)
Q Consensus 150 ~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~ 229 (371)
.++.+...+.|.|++++..| +|.|+|.|.|. ......+. +++|. .+|.+...+.
T Consensus 283 ----------------~rivl~g~~slliS~a~~~d-Sg~YtC~Atn~-~D~idasa---ev~V~-----a~P~~~~~p~ 336 (1381)
T KOG4221|consen 283 ----------------YRIVLVGGSSLLISNATDDD-SGKYTCRATNT-NDSIDASA---EVTVL-----APPGFTKAPT 336 (1381)
T ss_pred ----------------eEEEEecccceEEecccccc-CceEEEEecCC-Ccccccce---EEEEE-----cCCCCCCCCc
Confidence 13344444789999999999 99999999996 55555566 88998 7888888888
Q ss_pred eeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccCCceEEecc-eEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEE
Q psy14542 230 RILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGS-SLSISHVEESDSGVWNCVANNSEGQDKMQLFIQY 308 (371)
Q Consensus 230 ~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~-~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 308 (371)
... ..++.++.|.|.+.|.|.+.+.|++||..+..++.++...+ .|.|..+-..|.|-|.|.++|..|.....+.+.+
T Consensus 337 ~l~-A~e~~die~ec~~~g~p~p~v~w~kNgd~~ipsdy~ki~~~~~lrIlgi~~sdeg~yQcvaen~~G~a~a~a~l~v 415 (1381)
T KOG4221|consen 337 TLV-AHESMDIEFECPVSGKPIPTVRWYKNGDRIIPSDYFKIVGGGNLRILGIVKSDEGFYQCVAENDAGSAQAAAQLEV 415 (1381)
T ss_pred cee-eeeccceeEeCCCCCCCcceEEEEecCcccCcccceEecCCCCcEEEEEecccchhhhhhhccCcccccchhhhee
Confidence 887 77899999999999999999999999998887877775443 3888889999999999999999999988888866
Q ss_pred ecCcc
Q psy14542 309 AHGKY 313 (371)
Q Consensus 309 ~~~p~ 313 (371)
...|.
T Consensus 416 v~~p~ 420 (1381)
T KOG4221|consen 416 VPQPA 420 (1381)
T ss_pred ccCCc
Confidence 54433
No 7
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.97 E-value=2.2e-29 Score=212.25 Aligned_cols=247 Identities=18% Similarity=0.271 Sum_probs=171.2
Q ss_pred EEEeccCcEEEEEEec----CCCCCCeeEEEeCCEE----EeeCCeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEEEEE
Q psy14542 21 VVVDVGHRIELHCRVS----PKRLSSAKAWLKDGLV----LRRNSDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVI 92 (371)
Q Consensus 21 ~~~~~G~~v~l~C~~~----~~~~~~~~~W~~~~~~----~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~ 92 (371)
..+.+|+++.|.|... .+.|.+++.|+|+|.. ........|.|.++..+|+|.|+|.+.|..+.....+.|.
T Consensus 36 ~~~~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~~~~~~~~~~g~~l~i~~~~~~DsG~Y~C~a~N~~g~~~~s~~L~ 115 (326)
T PHA02785 36 FMELENEPVILPCPQINTLSSGYNILDILWEKRGADNDRIIPIDNGSNMLILNPTQSDSGIYICITKNETYCDMMSLNLT 115 (326)
T ss_pred hhhhcCCCEEEECCCccccccCCCCceEEEEECCCccceEEEccCCceEEEcccCcccCeEEEEEEECCCcceEEEEEEE
Confidence 4577899999999642 5778889999998743 1111344688999999999999999999988888888888
Q ss_pred Eecce-eeEec-CCceeeecCCcEEEEEEe-----cCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeC
Q psy14542 93 LGGEL-VEIAS-SNQVVVDVGHRIELHCRV-----SPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIED 165 (371)
Q Consensus 93 v~~~~-~~~~~-~~~~~~~~g~~v~l~C~~-----~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~ 165 (371)
|.... +.+.. .....+.+|..+.|.|.. .+.+. +.++|++++. +. +
T Consensus 116 V~~~~~~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~-~~i~W~k~~~-~~-------------------------~ 168 (326)
T PHA02785 116 IVSVSESNIDLISYPQIVNERSTGEMVCPNINAFIASNVN-ADIIWSGHRR-LR-------------------------N 168 (326)
T ss_pred EEecCCCccceeeccceecccCcEEEECCChhhcccCCCC-ceEEEccCCc-cC-------------------------C
Confidence 86322 11211 112234689999999972 34444 8999987542 21 1
Q ss_pred CceeEeccceEEEEEeecCCccceeEEEeeccccceeeeee-ccceeeeecchhccccceeeeeeeeeeeecCCeEEEEE
Q psy14542 166 GKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSV-NRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPC 244 (371)
Q Consensus 166 ~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~-~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C 244 (371)
.++....++.|.|.+++.+| .|.|+|.+.+. .+...... ..+.+.|.. ...+|.+ ..+.... +..|+.+.|.|
T Consensus 169 ~r~~~~~~~~L~i~~v~~~d-~G~Y~C~~~n~-~g~~~~~~t~~v~l~V~~--~~~pp~~-~~p~~~~-~~~G~~v~L~C 242 (326)
T PHA02785 169 KRLKQRTPGIITIEDVRKND-AGYYTCVLKYI-YGDKTYNVTRIVKLEVRD--RIIPPTM-QLPEGVV-TSIGSNLTIAC 242 (326)
T ss_pred cceEecCCCeEEEeecChhh-CeEEEEEEEec-cCCEEEeEEEEEEEEEec--cCCCcee-cCCCcEE-ecCCCcEEEEE
Confidence 13333334689999999999 99999999997 44332211 111344432 2234433 2334444 77899999999
Q ss_pred EeecCCCC---ceEEEeCCcccccC-----CceEE------------ecceEEEeccCCCCCeEEEEEEEcCCCCc
Q psy14542 245 SAQGNPLP---TIKWYKQDSPVEES-----DRIQR------------IGSSLSISHVEESDSGVWNCVANNSEGQD 300 (371)
Q Consensus 245 ~~~~~p~~---~v~W~~~~~~~~~~-----~~~~~------------~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~ 300 (371)
.+.|.|.+ .+.|++||..+... .++.. ..+.|.|.++..+|+|.|+|.|.|..|..
T Consensus 243 ~a~g~P~~~~~~v~W~kng~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~C~A~n~~~~~ 318 (326)
T PHA02785 243 RVSLRPPTTDADVFWISNGMYYEEDDEDGDGRISVANKIYTTDKRRVITSRLNINPVKEEDATTFTCMAFTIPSIS 318 (326)
T ss_pred EEECCCCCCCceEEEEECCEECCCcCCCCceeEEEecCccccccceeeeEEEEECCcchhcCeeeEEEEEeccCce
Confidence 99988864 79999999877432 12211 13579999999999999999999988544
No 8
>KOG4222|consensus
Probab=99.97 E-value=1e-30 Score=235.52 Aligned_cols=303 Identities=25% Similarity=0.406 Sum_probs=239.4
Q ss_pred eEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC--------CeeEEEEccCCcCCCeEEEEEEEcCCC
Q psy14542 12 SIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN--------SDEVLVLDRVQREDAGMYQCHVSADDD 83 (371)
Q Consensus 12 ~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~--------~~~~l~i~~~~~~d~G~Y~C~~~~~~~ 83 (371)
.+.+.|.. ..+..|+.+.|.|....++|.+.+.|.|+|+.+... ..+.|.|.+++.+|+|.|.|+++|..|
T Consensus 133 dfrv~prd-~~~a~ge~avlEcgpP~ghpeptvSw~Kdg~pl~~~~~~~~~lisgG~LlIsnvrksD~GtY~CVatNmvG 211 (1281)
T KOG4222|consen 133 DFRVSPRD-VQAAVGEEAVLECGPPRGHPEPTVSWVKDGKPLDHYDVPIIALISGGNLLISNVRKSDEGTYACVATNMVG 211 (1281)
T ss_pred hcccCccc-ccccccceeEEeccCCCCCCCCcceeecCCCccccccceeEEEecCCcEEEeccccCCCceeeeeeccccc
Confidence 46677777 889999999999977789999999999999887732 778899999999999999999999998
Q ss_pred Ce-EEEEEEEEecceeeEecCCceee-ecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEE
Q psy14542 84 SA-QMSAQVILGGELVEIASSNQVVV-DVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQC 161 (371)
Q Consensus 84 ~~-~~~~~l~v~~~~~~~~~~~~~~~-~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~ 161 (371)
.. +....|.|. ++|.+...+.+.+ ..|..+.++|.+.+.|. +.+.|.+++..+...
T Consensus 212 ~ReS~~A~lsv~-e~P~f~~rp~~~~v~~g~~~~f~c~v~GdP~-P~Vrwkk~~~~~P~~-------------------- 269 (1281)
T KOG4222|consen 212 ERESIPARLSVQ-EKPWFWKRPKDLAVLVGAAAEFDCRVGGDPQ-PTVRWKKDDPSLPRS-------------------- 269 (1281)
T ss_pred ccccccceeeec-cCCccccccccceeecccccccccccCCCCC-CceeeeccCCCCCcc--------------------
Confidence 76 456888888 6777777776665 88999999999999988 999999977666554
Q ss_pred EEeCCceeEecc-ceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeE
Q psy14542 162 HIEDGKYHMLSS-GELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESV 240 (371)
Q Consensus 162 ~~~~~~~~~~~~-~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~ 240 (371)
++.+..+ .+|.|.+++..| .|.|.|.+.|. .|....+. .++|+ .+|.+...+.... +..|..+
T Consensus 270 -----ry~i~~d~qtl~i~r~tp~d-eg~y~C~a~n~-vG~l~asa---~ltV~-----apP~f~kkp~dq~-v~lg~~v 333 (1281)
T KOG4222|consen 270 -----RYSILDDTQTLRIDRVTPTD-EGTYVCPAENL-VGGLEASA---TLTVQ-----APPSFGKKPRDQK-VALGGTV 333 (1281)
T ss_pred -----ceeeeeccccccccccCCCc-ccceeeecccc-cccccccc---ceEEe-----cCcccccccCccc-cccCceE
Confidence 3333333 689999999999 99999999999 77777777 99999 7888888887777 8999999
Q ss_pred EEEEEeecCCCCceEEEeCCccc--------ccCCceE-EecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEecC
Q psy14542 241 ILPCSAQGNPLPTIKWYKQDSPV--------EESDRIQ-RIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHG 311 (371)
Q Consensus 241 ~l~C~~~~~p~~~v~W~~~~~~~--------~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~ 311 (371)
+|.|.+.|+|.|.+.|.+.|... ....+.. ...++|.|.+++..|.|.|.|...+..|.......+.+.+.
T Consensus 334 t~pc~~~gnP~PavfW~keg~q~llf~~~p~~~~~r~svs~~g~L~it~v~~~d~g~Yvcq~~~~~~ss~~~a~~~qt~~ 413 (1281)
T KOG4222|consen 334 TFPCETLGNPPPAVFWLKEGSQDLLFSASPPSSNGRGSVSPTGTLTITNVRQSDEGYYVCQTQTSAGSSLTKAYLEQTDV 413 (1281)
T ss_pred EeeeecCCCCCcceEEeccCcceecccCCCCCcCccceecCCCCcccccccccccceEeecccccccccccceeEEEEee
Confidence 99999999999999999987621 1112211 33458999999999999999998888887654444443321
Q ss_pred cccccccceEEEEeeeeccccccccccccccceeeeeecCCeEEEeeeeecCCCCccccC
Q psy14542 312 KYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKYR 371 (371)
Q Consensus 312 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~ 371 (371)
-. . . -++|.+...+-+....+|..+.|.|.+.|.|.|.|.|+
T Consensus 414 ~~-------------~--~---rPpp~i~~g~~nQtl~v~s~a~l~c~atg~P~p~i~wl 455 (1281)
T KOG4222|consen 414 LT-------------D--S---RPPPIIEQGPANQTLPVGSTASLPCSATGAPTPNISWL 455 (1281)
T ss_pred ec-------------c--C---CCCceeeecccccccccCcccccChhhhCCCCCCchhh
Confidence 11 0 0 01122223333336678999999999999999999996
No 9
>KOG4194|consensus
Probab=99.93 E-value=4.3e-25 Score=187.66 Aligned_cols=231 Identities=21% Similarity=0.354 Sum_probs=171.3
Q ss_pred ceeeEecCCceee-ecCCcEEEEEEecCC-CCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCce--eEe
Q psy14542 96 ELVEIASSNQVVV-DVGHRIELHCRVSPK-RLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKY--HML 171 (371)
Q Consensus 96 ~~~~~~~~~~~~~-~~g~~v~l~C~~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~--~~~ 171 (371)
..|.+...|.... ..|+.++|+|.+.+. ..+..+.|.++........-. |...|-....++.+ ...
T Consensus 502 pkpqI~~qPe~~~al~g~nirftC~a~sssasplsi~WR~dnevq~rv~ve----------d~a~~~~q~r~~~~~e~~~ 571 (873)
T KOG4194|consen 502 PKPQIVTQPETVSALIGENIRFTCNAYSSSASPLSIEWRKDNEVQPRVDVE----------DFATFLSQNRNGTFGEREE 571 (873)
T ss_pred CCcceecCchHhhhhhccceEEEEEeccCCCCCceeEeeeccccCcccchh----------cchhhhhhhccCccchhhh
Confidence 3455555555444 789999999999663 234799999987643322110 11111100001111 011
Q ss_pred ccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecCCC
Q psy14542 172 SSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPL 251 (371)
Q Consensus 172 ~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~ 251 (371)
..+.|.+.++...| .|.|.|++.|..+......+ .++|. ..|.+...|.+.. ...|+.+.|.|.+.|.|.
T Consensus 572 ~~~~L~L~nVt~td-~grYQCVvtN~FGStysqk~---KltV~-----~~PsFtktP~dlt-l~tg~mArl~CaAtG~P~ 641 (873)
T KOG4194|consen 572 YTAILHLDNVTFTD-EGRYQCVVTNHFGSTYSQKA---KLTVN-----QAPSFTKTPEDLT-LRTGQMARLECAATGHPR 641 (873)
T ss_pred hhheeeeeeeeccc-CceEEEEEecccCcchhhee---EEEee-----ccCccccCcccce-eecccceeeeeeccCCCC
Confidence 12579999999999 99999999999333455555 88888 8899999999998 999999999999999999
Q ss_pred CceEEEeCCcc-cc--cCCceE--EecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEecCcccccccceEEEEee
Q psy14542 252 PTIKWYKQDSP-VE--ESDRIQ--RIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQV 326 (371)
Q Consensus 252 ~~v~W~~~~~~-~~--~~~~~~--~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~ 326 (371)
|.|.|.++|+. .+ ...|.. .++..+.|.++..+|.|.|+|.|.|..|..+..++|.|.+.|. +...
T Consensus 642 PeIawqkdggtdFPAA~eRRl~Vmpedd~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~e~p~---------f~~P 712 (873)
T KOG4194|consen 642 PEIAWQKDGGTDFPAARERRLHVMPEDDVFFITNVKIEDQGIYTCTAQNVAGQISANATLTVLETPS---------FSIP 712 (873)
T ss_pred cceeehhcCCCCCchhhhheeeecCCCCEEEEecccccccceeEEeeeccccceeeceEEEEecCCc---------cccc
Confidence 99999999875 22 223333 3557899999999999999999999999999999999999988 4311
Q ss_pred eeccccccccccccccceeeeeecCCeEEEeeeeecCCC-CccccC
Q psy14542 327 DEKNKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPL-PTIKYR 371 (371)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~-p~i~W~ 371 (371)
..+ ..+..|+++.|.|.+.|.|+ |.+.||
T Consensus 713 L~~----------------~~V~~get~vlqC~a~~~~a~pr~~W~ 742 (873)
T KOG4194|consen 713 LED----------------QLVVVGETLVLQCLAEGAPADPRLEWF 742 (873)
T ss_pred ccc----------------eEEEecceEEEEEecCCCCCCcccccc
Confidence 111 16889999999999999988 999997
No 10
>PHA02785 IL-beta-binding protein; Provisional
Probab=99.90 E-value=1.6e-22 Score=170.70 Aligned_cols=202 Identities=16% Similarity=0.262 Sum_probs=137.9
Q ss_pred ecCCcEEEEEEe-----cCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeec
Q psy14542 109 DVGHRIELHCRV-----SPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDE 183 (371)
Q Consensus 109 ~~g~~v~l~C~~-----~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~ 183 (371)
.+|+.+.|.|.+ .+.+. ++++|+|++..... .. .......|.|.++..
T Consensus 39 ~~ge~~~l~C~~~~~~~~g~p~-~~i~W~K~g~~~~~----~~----------------------~~~~g~~l~i~~~~~ 91 (326)
T PHA02785 39 LENEPVILPCPQINTLSSGYNI-LDILWEKRGADNDR----II----------------------PIDNGSNMLILNPTQ 91 (326)
T ss_pred hcCCCEEEECCCccccccCCCC-ceEEEEECCCccce----EE----------------------EccCCceEEEcccCc
Confidence 679999999997 56665 89999998742110 00 001113578999999
Q ss_pred CCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEe-----ecCCCCceEEEe
Q psy14542 184 SDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSA-----QGNPLPTIKWYK 258 (371)
Q Consensus 184 ~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~-----~~~p~~~v~W~~ 258 (371)
+| +|.|+|.+.|. .+....+. .|.|... .++.+........ +.+|..+.|.|.. .+.|.++++|++
T Consensus 92 ~D-sG~Y~C~a~N~-~g~~~~s~---~L~V~~~---~~~~~~~~~~~~~-~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k 162 (326)
T PHA02785 92 SD-SGIYICITKNE-TYCDMMSL---NLTIVSV---SESNIDLISYPQI-VNERSTGEMVCPNINAFIASNVNADIIWSG 162 (326)
T ss_pred cc-CeEEEEEEECC-CcceEEEE---EEEEEec---CCCccceeeccce-ecccCcEEEECCChhhcccCCCCceEEEcc
Confidence 99 99999999998 66656665 7777643 2222322222333 7789999999972 357889999987
Q ss_pred CCcccccCCceE-EecceEEEeccCCCCCeEEEEEEEcCCCCcee----EEEEEEecCcccccccceEEEEeeeeccccc
Q psy14542 259 QDSPVEESDRIQ-RIGSSLSISHVEESDSGVWNCVANNSEGQDKM----QLFIQYAHGKYHMLSSGELIIHQVDEKNKRL 333 (371)
Q Consensus 259 ~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~----~~~l~v~~~p~~~~~~~~~~~~~~~~~~~~~ 333 (371)
+. .+ ...++. ..++.|.|.++..+|.|.|+|.|.|..|.... .+.|.|..+..
T Consensus 163 ~~-~~-~~~r~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~~~~-------------------- 220 (326)
T PHA02785 163 HR-RL-RNKRLKQRTPGIITIEDVRKNDAGYYTCVLKYIYGDKTYNVTRIVKLEVRDRII-------------------- 220 (326)
T ss_pred CC-cc-CCcceEecCCCeEEEeecChhhCeEEEEEEEeccCCEEEeEEEEEEEEEeccCC--------------------
Confidence 54 33 233443 33578999999999999999999999887543 33444432111
Q ss_pred cccccccccceeeeeecCCeEEEeeeeecCCCC---ccccC
Q psy14542 334 LSAAKMFEKHRILNVKKDESVILPCSAQGNPLP---TIKYR 371 (371)
Q Consensus 334 ~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p---~i~W~ 371 (371)
+|. +..|....+..|+.++|.|.+.|.|++ .+.|+
T Consensus 221 --pp~-~~~p~~~~~~~G~~v~L~C~a~g~P~~~~~~v~W~ 258 (326)
T PHA02785 221 --PPT-MQLPEGVVTSIGSNLTIACRVSLRPPTTDADVFWI 258 (326)
T ss_pred --Cce-ecCCCcEEecCCCcEEEEEEEECCCCCCCceEEEE
Confidence 000 011223367789999999999998874 79995
No 11
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.84 E-value=2e-19 Score=142.45 Aligned_cols=147 Identities=20% Similarity=0.316 Sum_probs=109.7
Q ss_pred cEEEeccCcEEEEEEecCC----------CCCCeeEEEeCCEEE--ee------------C----CeeEEEEccCCcCCC
Q psy14542 20 QVVVDVGHRIELHCRVSPK----------RLSSAKAWLKDGLVL--RR------------N----SDEVLVLDRVQREDA 71 (371)
Q Consensus 20 ~~~~~~G~~v~l~C~~~~~----------~~~~~~~W~~~~~~~--~~------------~----~~~~l~i~~~~~~d~ 71 (371)
++.+.+|+++.|.|.+... .....+.|+|++... .. . ...+|+|.+++.+|+
T Consensus 31 ~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~Ds 110 (227)
T PHA02826 31 PVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINIDE 110 (227)
T ss_pred eEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCChHHC
Confidence 4789999999999954321 234589999987542 10 0 246899999999999
Q ss_pred eEEEEEEEcCCCCeEEEEEEEEecceeeEecCCceeeecCCcEEEEEEecCCC----CCceEEEeeCCEEeeeCCeeEEE
Q psy14542 72 GMYQCHVSADDDSAQMSAQVILGGELVEIASSNQVVVDVGHRIELHCRVSPKR----LSSAKAWLKDGLVLRRNSDEVLV 147 (371)
Q Consensus 72 G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~----~~~~v~W~~~~~~~~~~~~~~~~ 147 (371)
|.|+|.+.|..+.....+.|.|.. ++ ....+.+|+.++|.|.+.+.+ +.++++|+|++.++......
T Consensus 111 G~Y~C~a~N~~~~~~~~i~L~V~~-~~-----~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~~~~r~--- 181 (227)
T PHA02826 111 GIYICTISSGNICEESTIRLTFDS-GT-----INYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVLYTDRI--- 181 (227)
T ss_pred EEEEEEEEECCcceEEEEEEEEec-CC-----ccceEecCCCEEEEeeCCCCccccCCCceEEEEECCEECCCCCCE---
Confidence 999999999888778888888862 21 122347899999999986321 23899999999988644221
Q ss_pred EcccCcCCCeeEEEEEeCCceeEe-ccceEEEEEeecCCccceeEEEeecc
Q psy14542 148 LDRVQREDAGMYQCHIEDGKYHML-SSGELIIHQVDESDRYRSYQCRGVNK 197 (371)
Q Consensus 148 ~~~~~~~~~g~y~~~~~~~~~~~~-~~~~l~i~~~~~~d~~g~y~C~~~~~ 197 (371)
.+. ....|.|.+++.+| +|.|+|.+...
T Consensus 182 ---------------------~~~~~~~~L~I~~V~~~D-sG~YtC~a~~~ 210 (227)
T PHA02826 182 ---------------------QLRNNNSTLVIKSATHDD-SGIYTCNLRFN 210 (227)
T ss_pred ---------------------EEeCCCCEEEECcCCHHh-CEEEEEEEEEe
Confidence 111 12579999999999 99999999976
No 12
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.83 E-value=2e-19 Score=142.39 Aligned_cols=161 Identities=20% Similarity=0.269 Sum_probs=111.3
Q ss_pred eeecCCcEEEEEEecCCCC----------CceEEEeeCCEEee--eCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccc
Q psy14542 107 VVDVGHRIELHCRVSPKRL----------SSAKAWLKDGLVLR--RNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSG 174 (371)
Q Consensus 107 ~~~~g~~v~l~C~~~~~~~----------~~~v~W~~~~~~~~--~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~ 174 (371)
.+.+|+++.|.|.+.+.+. ...+.|+|.+...- ..+... .+.... ..+. ...+.
T Consensus 33 ~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~-~~~~i~------------~~~~-~~r~~ 98 (227)
T PHA02826 33 YAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGART-KIKKIT------------HNEI-GDRSE 98 (227)
T ss_pred EecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCcc-cccccc------------ccce-ecCCC
Confidence 4479999999999866432 25899999875321 110000 000000 0000 01236
Q ss_pred eEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeec-----C
Q psy14542 175 ELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQG-----N 249 (371)
Q Consensus 175 ~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~-----~ 249 (371)
.|.|.+++.+| +|.|+|.+.|. .+....+. .|.|. .++ .... +..|+.+.|.|.+.+ .
T Consensus 99 ~L~I~~v~~~D-sG~Y~C~a~N~-~~~~~~~i---~L~V~-----~~~------~~~~-~~~G~~v~L~C~~~~~~~~~~ 161 (227)
T PHA02826 99 NLWIGNVINID-EGIYICTISSG-NICEESTI---RLTFD-----SGT------INYQ-FNSGKDSKLHCYGTDGISSTF 161 (227)
T ss_pred eEEECCCChHH-CEEEEEEEEEC-CcceEEEE---EEEEe-----cCC------ccce-EecCCCEEEEeeCCCCccccC
Confidence 89999999999 99999999997 66655555 66664 211 1123 778999999999753 4
Q ss_pred CCCceEEEeCCcccccCCceEE--ecceEEEeccCCCCCeEEEEEEEcCCC
Q psy14542 250 PLPTIKWYKQDSPVEESDRIQR--IGSSLSISHVEESDSGVWNCVANNSEG 298 (371)
Q Consensus 250 p~~~v~W~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~G~Y~C~a~n~~g 298 (371)
|.|+++|++++..+....++.. .++.|.|.++..+|+|.|+|.|....+
T Consensus 162 p~p~I~WyKng~~l~~~~r~~~~~~~~~L~I~~V~~~DsG~YtC~a~~~~~ 212 (227)
T PHA02826 162 KDYTLTWYKNGNIVLYTDRIQLRNNNSTLVIKSATHDDSGIYTCNLRFNKN 212 (227)
T ss_pred CCceEEEEECCEECCCCCCEEEeCCCCEEEECcCCHHhCEEEEEEEEEeEC
Confidence 5789999999999877666653 345899999999999999999998653
No 13
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.75 E-value=2.1e-17 Score=111.46 Aligned_cols=88 Identities=31% Similarity=0.508 Sum_probs=76.6
Q ss_pred ccceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCCCc
Q psy14542 221 SAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQD 300 (371)
Q Consensus 221 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~ 300 (371)
+|.+...+.+.. +..|+.+.|.|.+.|.|.|.++|++++..+....++...++.|.|.++..+|+|.|+|.|.|..|..
T Consensus 1 ~p~i~~~~~~~~-~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~ 79 (88)
T cd05851 1 PADINVKFKDTY-ALKGQNVTLECFALGNPVPVIRWRKILEPMPATAEISMSGAVLKIFNIQPEDEGTYECEAENIKGKD 79 (88)
T ss_pred CCceEEccccEE-EeCCCcEEEEEEecccCCCEEEEEECCcCCCCCCEEecCCCEEEECcCChhhCEEEEEEEEcCCCce
Confidence 355666666666 8999999999999999999999999998887666666667789999999999999999999999999
Q ss_pred eeEEEEEEe
Q psy14542 301 KMQLFIQYA 309 (371)
Q Consensus 301 ~~~~~l~v~ 309 (371)
...+.|.|.
T Consensus 80 ~~~~~l~V~ 88 (88)
T cd05851 80 KHQARVYVQ 88 (88)
T ss_pred EEEEEEEEC
Confidence 999888773
No 14
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.74 E-value=3.4e-17 Score=112.62 Aligned_cols=90 Identities=21% Similarity=0.289 Sum_probs=78.2
Q ss_pred ceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccCCceEEe----cceEEEeccCCCCCeEEEEEEEcCCC
Q psy14542 223 AKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI----GSSLSISHVEESDSGVWNCVANNSEG 298 (371)
Q Consensus 223 ~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~a~n~~g 298 (371)
.|...+.... +..|+.+.|.|.+.|.|++++.|++++..+..+.++... .+.|.|.++..+|+|.|+|.|.|..|
T Consensus 2 ~~~~~p~~~~-v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G 80 (98)
T cd05762 2 QIIQFPEDMK-VRAGESVELFCKVTGTQPITCTWMKFRKQIQEGEGIKIENTENSSKLTITEGQQEHCGCYTLEVENKLG 80 (98)
T ss_pred ceEECCcCEE-EECCCEEEEEEEEcccCCCceEEEECCEEecCCCcEEEEecCCeeEEEECCCChhhCEEEEEEEEcCCC
Confidence 3444455555 999999999999999999999999999999877666532 46799999999999999999999999
Q ss_pred CceeEEEEEEecCcc
Q psy14542 299 QDKMQLFIQYAHGKY 313 (371)
Q Consensus 299 ~~~~~~~l~v~~~p~ 313 (371)
....++.|.|.++|.
T Consensus 81 ~~~~~~~l~V~~~P~ 95 (98)
T cd05762 81 SRQAQVNLTVVDKPD 95 (98)
T ss_pred ceeEEEEEEEecCCC
Confidence 999999999998876
No 15
>KOG3515|consensus
Probab=99.68 E-value=7.3e-16 Score=137.85 Aligned_cols=315 Identities=14% Similarity=0.170 Sum_probs=191.5
Q ss_pred ccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC----CeeEEEEccCCcCCCeEEEEEEEcCCCC
Q psy14542 9 SSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN----SDEVLVLDRVQREDAGMYQCHVSADDDS 84 (371)
Q Consensus 9 ~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~----~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 84 (371)
..|.....+.. ..+..|+.|.|.|.+..++|...+.|++.+...... ....|.........-+.|.|.+.+..+.
T Consensus 6 ~~pv~~~~~l~-~~~~~g~~v~l~C~v~~~pp~~~~eW~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~a~ns~~~ 84 (741)
T KOG3515|consen 6 NVPVCESSSLT-VGLRLGEDVPLPCRVNSNPPEIDVEWYHSTSGEHGRYATIADPTLVTTGDVRDTVAELNCRAFNSVGM 84 (741)
T ss_pred CCccccCCCCC-hhhccCCcceeeeecCCCCCCcceEEEecCcccccccccccCCceeeecchhhhhhhhhhhhcccccC
Confidence 34444444455 489999999999988888899999999987655522 5556777777777778999999987544
Q ss_pred e-EEEEEEEEecceeeEecCCceeeecCCcEEEEEEec-CCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEE
Q psy14542 85 A-QMSAQVILGGELVEIASSNQVVVDVGHRIELHCRVS-PKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCH 162 (371)
Q Consensus 85 ~-~~~~~l~v~~~~~~~~~~~~~~~~~g~~v~l~C~~~-~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~ 162 (371)
. .....+.+...+......-......+..+.+.|.+. +..+.++++|..+.............+.+.- ..+
T Consensus 85 ~~~~~~~l~v~~~pa~~~~~~e~~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~~~~~~~~a--~gs----- 157 (741)
T KOG3515|consen 85 PSRCPMILDVDYPPACLPELGEIFQVDKGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVNQRGRVGAGA--LGS----- 157 (741)
T ss_pred ceecceeeccccCccccccccchhhhcCCeEEEEEeecCCCCCCcceeeeeccEEeecccCCcccccccc--cCc-----
Confidence 3 455666766333333322233336788899999653 3334489999998876544331111111000 000
Q ss_pred EeCCceeEeccceEEEEEeecCCccceeEEEeeccc--cceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeE
Q psy14542 163 IEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKL--TGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESV 240 (371)
Q Consensus 163 ~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~--~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~ 240 (371)
.....+.+.+...+.++ .|.|+|.+.+.. .+...... .+.+... .....+........ ..+|+.+
T Consensus 158 ------s~t~~s~l~~~v~Rka~-~g~~tC~A~nr~s~~l~~~~~~---~i~v~~~--~~~~~~~~~~~~qs-F~~g~~i 224 (741)
T KOG3515|consen 158 ------SYTEPSLLKQTVSRKAD-NGNYTCPANNRNSPGLSFAKQL---TIIVEAP--CKGIGITGAQEQQS-FTEGQTI 224 (741)
T ss_pred ------eeccccceeeEEEEecC-CceeEcccccccCcccccccee---Eeecccc--cccceecchhhcCc-ccccceE
Confidence 11223567888888888 999999999851 33333333 3333321 12222222222233 7899999
Q ss_pred EEEEEee-cCCCCceEEEeCCcccccCCceEE------ecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEecCcc
Q psy14542 241 ILPCSAQ-GNPLPTIKWYKQDSPVEESDRIQR------IGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKY 313 (371)
Q Consensus 241 ~l~C~~~-~~p~~~v~W~~~~~~~~~~~~~~~------~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~ 313 (371)
.|.|.+. ++|.+.++|+++......++.... ....+.+..-..++.-...|.+.| ...++..+.+..++.
T Consensus 225 nlvc~~~gg~P~~~~~w~~~s~~~~~~sl~~~~~sg~~v~~~~~~~~~r~~~~~~~kc~a~n---~~~~~~~tav~~~~~ 301 (741)
T KOG3515|consen 225 NLVCNAQGGNPSQQQTWYKDSRPQSESSLLSQEPSGDTVSSTLVLRVGRQDLQAQLKCKASN---LLAASQITAVQVKPT 301 (741)
T ss_pred EEEehhhcCCcchhhhhccccccchhhhcccCCCCCCcccccccccccccchhhhhhccccC---ccccceeeecccccc
Confidence 9999865 588899999999887655422211 112344444444555677899998 223333344444444
Q ss_pred cccccceEEEEeeeeccccccccccccccceeeeeecCCeEEEeeeeec-CCCCccccC
Q psy14542 314 HMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKDESVILPCSAQG-NPLPTIKYR 371 (371)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g-~p~p~i~W~ 371 (371)
. ..+..+.. .+..|+...+.|...+ +|++.+.|+
T Consensus 302 ~---------~~Ist~~~---------------~ls~g~s~r~~c~~sss~p~~~i~w~ 336 (741)
T KOG3515|consen 302 A---------VPISTSDS---------------GLSSGRSARSSCVSSSSKPPAHIAWY 336 (741)
T ss_pred c---------ccccCccc---------------ccccccccccceeccCCCCccceeee
Confidence 1 10111111 4668999999988765 688899996
No 16
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.67 E-value=5.1e-16 Score=100.29 Aligned_cols=72 Identities=25% Similarity=0.492 Sum_probs=65.2
Q ss_pred CCeEEEEEEeecCCCCceEEEeCCcccccCCceEE-ecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEE
Q psy14542 237 DESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQR-IGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQY 308 (371)
Q Consensus 237 g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 308 (371)
|+.+.|.|.+.|.|.|.+.|++++..+..+.++.. .+++|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~ 73 (73)
T cd05852 1 GGRVIIECKPKAAPKPKFSWSKGTELLVNNSRISIWDDGSLEILNITKLDEGSYTCFAENNRGKANSTGVLSV 73 (73)
T ss_pred CCeEEEEEecceeCCCEEEEEeCCEecccCCCEEEcCCCEEEECcCChhHCEEEEEEEECCCCceeEEEEEEC
Confidence 67899999999999999999999998877777764 5679999999999999999999999999999988865
No 17
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.67 E-value=6.8e-16 Score=103.60 Aligned_cols=79 Identities=29% Similarity=0.521 Sum_probs=71.6
Q ss_pred eeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEE
Q psy14542 229 HRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQY 308 (371)
Q Consensus 229 ~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 308 (371)
.+.. +..|+.+.|.|.+.|.|.|.+.|++++..+....++...++.|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus 7 ~~~~-~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 85 (85)
T cd05728 7 SDTE-ADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEVEAGDLRITKLSLSDSGMYQCVAENKHGTIYASAELAV 85 (85)
T ss_pred CccE-EcCCCcEEEEEEeeEeCCCEEEEEECCEECCCCCeEEEeCCEEEEeeCCHHHCEEEEEEEECCCCeEEEEEEEEC
Confidence 3444 889999999999999999999999999998887778888889999999999999999999999999988888764
No 18
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.66 E-value=5e-16 Score=101.35 Aligned_cols=73 Identities=30% Similarity=0.465 Sum_probs=64.6
Q ss_pred cCCeEEEEEEeecCCCCceEEEeCCcccccCCceE-EecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEE
Q psy14542 236 KDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQ-RIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQY 308 (371)
Q Consensus 236 ~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 308 (371)
+|+.+.|.|.+.|.|.|.+.|++++..+....+.. ..+++|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus 1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 74 (74)
T cd05745 1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVLSSGTLRISRVALHDQGQYECQAVNIVGSQRTVAQLTV 74 (74)
T ss_pred CCCeEEEEeECCEecCCEEEEEECCEECCCCCCeEEccCCeEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEeC
Confidence 58899999999999999999999999887665544 35678999999999999999999999999999888865
No 19
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.66 E-value=2e-15 Score=102.33 Aligned_cols=84 Identities=33% Similarity=0.528 Sum_probs=71.4
Q ss_pred eeeeeeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEE
Q psy14542 225 MFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQL 304 (371)
Q Consensus 225 ~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~ 304 (371)
...+.... +.+|+.+.|.|.+.|.|.|.+.|++++..+.........++.|.|.++..+|+|.|+|.|.|..|....++
T Consensus 5 ~~~p~~~~-~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~ 83 (88)
T cd04968 5 VVFPKDTY-ALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEISMSGAVLKIPNIQFEDEGTYECEAENIKGKDTHQG 83 (88)
T ss_pred EECCCceE-EeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCccEEEEeCCEEEECCCCcccCEEEEEEEEECCCcEEEEE
Confidence 33344444 88999999999999999999999999887766555556678999999999999999999999999999888
Q ss_pred EEEEe
Q psy14542 305 FIQYA 309 (371)
Q Consensus 305 ~l~v~ 309 (371)
.|.|.
T Consensus 84 ~l~V~ 88 (88)
T cd04968 84 RIYVQ 88 (88)
T ss_pred EEEEC
Confidence 88763
No 20
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.64 E-value=2.3e-15 Score=103.49 Aligned_cols=76 Identities=20% Similarity=0.341 Sum_probs=66.7
Q ss_pred eecCCeEEEEEEeec-CCCCceEEEeCCcccccCCceE-E--------ecceEEEeccCCCCCeEEEEEEEcCCCCceeE
Q psy14542 234 VKKDESVILPCSAQG-NPLPTIKWYKQDSPVEESDRIQ-R--------IGSSLSISHVEESDSGVWNCVANNSEGQDKMQ 303 (371)
Q Consensus 234 ~~~g~~~~l~C~~~~-~p~~~v~W~~~~~~~~~~~~~~-~--------~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~ 303 (371)
+..|+++.|.|.+.| .|+|.+.|+|||.++....... . ..+.|.|..+..+|+|.|+|.|.|..|..+.+
T Consensus 15 v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~~~~t 94 (101)
T cd04975 15 VNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDASKSLT 94 (101)
T ss_pred EECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCccEEEE
Confidence 889999999999999 8899999999999887554422 1 13679999999999999999999999999999
Q ss_pred EEEEEe
Q psy14542 304 LFIQYA 309 (371)
Q Consensus 304 ~~l~v~ 309 (371)
+.|.|.
T Consensus 95 ~~L~V~ 100 (101)
T cd04975 95 FELYVN 100 (101)
T ss_pred EEEEEE
Confidence 999886
No 21
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.63 E-value=3e-15 Score=98.22 Aligned_cols=72 Identities=28% Similarity=0.547 Sum_probs=63.7
Q ss_pred CCeEEEEEEeecCCCCceEEEeCCcccccC---CceEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEE
Q psy14542 237 DESVILPCSAQGNPLPTIKWYKQDSPVEES---DRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQY 308 (371)
Q Consensus 237 g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~---~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 308 (371)
|+++.|.|.+.|.|.|+++|+++|..+... .++...++.|.|.++..+|+|.|+|.|.|..|.....+.|.|
T Consensus 1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 75 (76)
T cd05867 1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHVSSGALILTDVQPSDTAVYQCEARNRHGNLLANAHVHV 75 (76)
T ss_pred CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEEeeCCEEEECCCChhhCEEEEEEEECCCCeEEEEEEEEE
Confidence 678999999999999999999999877653 244556788999999999999999999999999998888876
No 22
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.63 E-value=4e-15 Score=101.60 Aligned_cols=75 Identities=27% Similarity=0.500 Sum_probs=66.3
Q ss_pred eecCCeEEEEEEeecCCCCceEEEeCCcccccCCceEE--e---cceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEE
Q psy14542 234 VKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQR--I---GSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQY 308 (371)
Q Consensus 234 ~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~--~---~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 308 (371)
+.+|+++.|.|.+.|.|.|.+.|++++..+....++.. . ..+|.|.++..+|+|.|+|.|.|..|.....+.|.|
T Consensus 13 v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~v 92 (92)
T cd05737 13 IMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGETVDVTVSV 92 (92)
T ss_pred EeCCCcEEEEEEEEecCCCeEEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcceEEEEEeC
Confidence 88999999999999999999999999998877666543 2 237999999999999999999999999998888765
No 23
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.63 E-value=4.8e-15 Score=99.88 Aligned_cols=77 Identities=25% Similarity=0.375 Sum_probs=66.5
Q ss_pred CCeEEEEEEeecCCCCceEEEeCCcccccC-CceEEe--------cceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEE
Q psy14542 237 DESVILPCSAQGNPLPTIKWYKQDSPVEES-DRIQRI--------GSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQ 307 (371)
Q Consensus 237 g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~-~~~~~~--------~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 307 (371)
|+.+.|.|.+.|.|++.+.|++++..+... .++... .+.|.|.++..+|+|.|+|.|.|..|.....+.|.
T Consensus 1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L~ 80 (88)
T cd05735 1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQLT 80 (88)
T ss_pred CCeEEEEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEEEE
Confidence 688999999999999999999999877543 344321 15799999999999999999999999999999999
Q ss_pred EecCcc
Q psy14542 308 YAHGKY 313 (371)
Q Consensus 308 v~~~p~ 313 (371)
|.++|.
T Consensus 81 V~~~P~ 86 (88)
T cd05735 81 VQEPPD 86 (88)
T ss_pred EeCCCC
Confidence 998876
No 24
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.63 E-value=2.3e-15 Score=94.66 Aligned_cols=66 Identities=26% Similarity=0.438 Sum_probs=57.0
Q ss_pred EEEEEEeecCCCCceEEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEe
Q psy14542 240 VILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYA 309 (371)
Q Consensus 240 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 309 (371)
+.|.|.+.|.|.|.+.|+|||..+.... ..+.|.|.++..+|+|.|+|.|.|..|....++.+.+.
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~----~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l~ 66 (67)
T cd05863 1 VKLPVKVAAYPPPEFQWYKDGKLISGKH----SQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLELI 66 (67)
T ss_pred CEEEEEEEEeCCCEEEEEECCEECcccC----CcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEEE
Confidence 4689999999999999999999886432 35689999999999999999999999988777777653
No 25
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.62 E-value=5.3e-15 Score=99.75 Aligned_cols=82 Identities=21% Similarity=0.296 Sum_probs=70.6
Q ss_pred cceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC-----CeeEEEEccCCcCCCeEEEEEEEcCCCC
Q psy14542 10 SLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN-----SDEVLVLDRVQREDAGMYQCHVSADDDS 84 (371)
Q Consensus 10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~-----~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 84 (371)
+|.+.+.+.+ ..+.+|+.+.|.| ...+.|.+.+.|+|++..+... ....|.|.+++.+|+|.|+|.|.|..|.
T Consensus 1 ~p~i~~~~~~-~~~~~G~~v~l~C-~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 78 (88)
T cd05851 1 PADINVKFKD-TYALKGQNVTLEC-FALGNPVPVIRWRKILEPMPATAEISMSGAVLKIFNIQPEDEGTYECEAENIKGK 78 (88)
T ss_pred CCceEEcccc-EEEeCCCcEEEEE-EecccCCCEEEEEECCcCCCCCCEEecCCCEEEECcCChhhCEEEEEEEEcCCCc
Confidence 4678888888 8899999999999 5678899999999988765433 4458999999999999999999999999
Q ss_pred eEEEEEEEE
Q psy14542 85 AQMSAQVIL 93 (371)
Q Consensus 85 ~~~~~~l~v 93 (371)
....+.|.|
T Consensus 79 ~~~~~~l~V 87 (88)
T cd05851 79 DKHQARVYV 87 (88)
T ss_pred eEEEEEEEE
Confidence 988888876
No 26
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.62 E-value=4.5e-15 Score=95.81 Aligned_cols=70 Identities=30% Similarity=0.552 Sum_probs=61.6
Q ss_pred eEEEEEEeecCCCCceEEEeCCcccccCCceE-EecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEE
Q psy14542 239 SVILPCSAQGNPLPTIKWYKQDSPVEESDRIQ-RIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQY 308 (371)
Q Consensus 239 ~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 308 (371)
++.|.|.+.|.|.|.++|++++..+....++. ..++.|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus 1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 71 (71)
T cd05723 1 DVIFECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKEHNLQVLGLVKSDEGFYQCIAENDVGNVQASAQLII 71 (71)
T ss_pred CEEEEEEEEEeCCCEEEEEECCeECCCCCCEEEEecCCEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence 37899999999999999999999887766655 34567999999999999999999999999999888865
No 27
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.62 E-value=3e-15 Score=96.95 Aligned_cols=69 Identities=28% Similarity=0.438 Sum_probs=59.0
Q ss_pred EEEEEEeecCCCCceEEEeCCccccc-CCceEE--ec-c--eEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEE
Q psy14542 240 VILPCSAQGNPLPTIKWYKQDSPVEE-SDRIQR--IG-S--SLSISHVEESDSGVWNCVANNSEGQDKMQLFIQY 308 (371)
Q Consensus 240 ~~l~C~~~~~p~~~v~W~~~~~~~~~-~~~~~~--~~-~--~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 308 (371)
+.|.|.+.|.|.|.+.|++++..+.. +.++.. .+ + +|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus 1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05892 1 VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV 75 (75)
T ss_pred CEEEEEEEecCCCeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence 47899999999999999999998874 345543 12 2 7999999999999999999999999999988865
No 28
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.62 E-value=1e-14 Score=100.28 Aligned_cols=83 Identities=22% Similarity=0.327 Sum_probs=72.7
Q ss_pred ceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC---------CeeEEEEccCCcCCCeEEEEEEEcC
Q psy14542 11 LSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN---------SDEVLVLDRVQREDAGMYQCHVSAD 81 (371)
Q Consensus 11 ~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~---------~~~~l~i~~~~~~d~G~Y~C~~~~~ 81 (371)
|.|...|.. +.+.+|+.+.|.|.+ .+.|.+.+.|+|++..+... ..+.|.|.++..+|+|.|+|.+.|.
T Consensus 1 p~~~~~p~~-~~v~~G~~v~l~C~~-~G~p~p~v~W~kdg~~l~~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~ 78 (98)
T cd05762 1 PQIIQFPED-MKVRAGESVELFCKV-TGTQPITCTWMKFRKQIQEGEGIKIENTENSSKLTITEGQQEHCGCYTLEVENK 78 (98)
T ss_pred CceEECCcC-EEEECCCEEEEEEEE-cccCCCceEEEECCEEecCCCcEEEEecCCeeEEEECCCChhhCEEEEEEEEcC
Confidence 346667777 999999999999965 57888999999999988643 4678999999999999999999999
Q ss_pred CCCeEEEEEEEEec
Q psy14542 82 DDSAQMSAQVILGG 95 (371)
Q Consensus 82 ~~~~~~~~~l~v~~ 95 (371)
.|....++.|.|.+
T Consensus 79 ~G~~~~~~~l~V~~ 92 (98)
T cd05762 79 LGSRQAQVNLTVVD 92 (98)
T ss_pred CCceeEEEEEEEec
Confidence 99999999999983
No 29
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.62 E-value=6.9e-15 Score=100.47 Aligned_cols=86 Identities=31% Similarity=0.550 Sum_probs=73.4
Q ss_pred cccceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccCCceEEe----cceEEEeccCCCCCeEEEEEEEc
Q psy14542 220 LSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI----GSSLSISHVEESDSGVWNCVANN 295 (371)
Q Consensus 220 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~a~n 295 (371)
.+|.+...+.... +..|+.+.|.|.+.|.|.|.+.|+++|..+..+.++... .+.|.|.++..+|+|.|+|.|.|
T Consensus 2 ~~~~~~~~p~~~~-~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N 80 (92)
T cd05747 2 LPATILTKPRSLT-VSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVVVEN 80 (92)
T ss_pred CCCcccccCccEE-EeCCCcEEEEEEEeecCCCEEEEEECCEECCCCCcEEEEEcCCeeEEEECCCCcccCEeEEEEEEc
Confidence 3566666666666 999999999999999999999999999988776665532 35899999999999999999999
Q ss_pred CCCCceeEEEE
Q psy14542 296 SEGQDKMQLFI 306 (371)
Q Consensus 296 ~~g~~~~~~~l 306 (371)
..|....++.|
T Consensus 81 ~~G~~~~~~~l 91 (92)
T cd05747 81 SEGKQEAQFTL 91 (92)
T ss_pred CCCCEeEEEEe
Confidence 99998888776
No 30
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.62 E-value=5e-15 Score=102.08 Aligned_cols=76 Identities=21% Similarity=0.344 Sum_probs=66.8
Q ss_pred eecCCeEEEEEEeecCCCCceEEEeCCcccccCCceEE----------ecceEEEeccCCCCCeEEEEEEEcCCCCceeE
Q psy14542 234 VKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQR----------IGSSLSISHVEESDSGVWNCVANNSEGQDKMQ 303 (371)
Q Consensus 234 ~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~----------~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~ 303 (371)
+..|+.+.|.|.+.|+|+|.+.|+|+|.++..+.+... ..++|.|.++..+|+|.|+|.|.|..|..+.+
T Consensus 15 ~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~~~t 94 (101)
T cd05859 15 ANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVKSYT 94 (101)
T ss_pred EecCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceEEEE
Confidence 88899999999999999999999999999876653221 13579999999999999999999999999999
Q ss_pred EEEEEe
Q psy14542 304 LFIQYA 309 (371)
Q Consensus 304 ~~l~v~ 309 (371)
+.|.|.
T Consensus 95 ~~l~V~ 100 (101)
T cd05859 95 FALQIQ 100 (101)
T ss_pred EEEEEE
Confidence 998875
No 31
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.62 E-value=6.7e-15 Score=98.62 Aligned_cols=75 Identities=29% Similarity=0.525 Sum_probs=65.9
Q ss_pred eecCCeEEEEEEeecCCCCceEEEeCCcccccC-CceEEe----cceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEE
Q psy14542 234 VKKDESVILPCSAQGNPLPTIKWYKQDSPVEES-DRIQRI----GSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQY 308 (371)
Q Consensus 234 ~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~-~~~~~~----~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 308 (371)
+..|+.+.|.|.+.|.|.|.+.|++++.++... .++... .+.|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus 7 v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~l~V 86 (86)
T cd05894 7 VVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGEDHASLFVKV 86 (86)
T ss_pred EEcCCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcEEEEEEEEC
Confidence 889999999999999999999999999988754 345422 357999999999999999999999999998888865
No 32
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.62 E-value=3e-15 Score=96.41 Aligned_cols=70 Identities=31% Similarity=0.582 Sum_probs=62.1
Q ss_pred EEEEEEeecCCCCceEEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEe
Q psy14542 240 VILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYA 309 (371)
Q Consensus 240 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 309 (371)
+.|.|.+.|.|.|.+.|+++|..+....++...+++|.|.++..+|+|.|+|.|.|..|.....+.+.+.
T Consensus 1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~~ 70 (71)
T cd04976 1 VRLPVKVKAYPPPEIQWYKNGKLISEKNRTKKSGHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTLV 70 (71)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCCCEEEcCCCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEEE
Confidence 3689999999999999999999988776666677899999999999999999999999998777777664
No 33
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.61 E-value=7.3e-15 Score=101.19 Aligned_cols=77 Identities=29% Similarity=0.609 Sum_probs=67.2
Q ss_pred eecCCeEEEEEEeecCCCCceEEEeCCcccccC-CceEE--ecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEec
Q psy14542 234 VKKDESVILPCSAQGNPLPTIKWYKQDSPVEES-DRIQR--IGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAH 310 (371)
Q Consensus 234 ~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~-~~~~~--~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~ 310 (371)
+..|+.+.|.|.+.|.|.|.+.|+++|..+... .++.. .++.|.|.++..+|.|.|+|.|.|..|....++.|.|..
T Consensus 15 ~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~ 94 (95)
T cd05730 15 ANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSFNEDGSEMTILDVDKLDEAEYTCIAENKAGEQEAEIHLKVFA 94 (95)
T ss_pred EeCCCCEEEEEeccEeCCCEEEEEECCEECcCCCCEEEEeCCCCEEEECCCChhhCEEEEEEEEcCCCeEEEEEEEEEEe
Confidence 789999999999999999999999999887665 33432 335799999999999999999999999999999998864
No 34
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.60 E-value=6.2e-15 Score=95.95 Aligned_cols=72 Identities=32% Similarity=0.495 Sum_probs=64.2
Q ss_pred CCeEEEEEEeecCCCCceEEEeCCcccccCCceEE-ecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEE
Q psy14542 237 DESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQR-IGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQY 308 (371)
Q Consensus 237 g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 308 (371)
|+.+.|.|.+.|.|.|.++|++++..+....++.. .++.|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 73 (73)
T cd04969 1 GGDVIIECKPKAAPKPTISWSKGTELLTNSSRICIWPDGSLEILNVTKSDEGKYTCFAENFFGKANSTGSLSV 73 (73)
T ss_pred CCeEEEEEeeeEcCCCEEEEEECCEEcccCCCEEECCCCeEEEccCChhHCEEEEEEEECCCCceEEEEEEEC
Confidence 67899999999999999999999998877766663 4468999999999999999999999999999888865
No 35
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.60 E-value=7.7e-15 Score=96.00 Aligned_cols=72 Identities=32% Similarity=0.551 Sum_probs=62.3
Q ss_pred CCeEEEEEEeecCCCCceEEEeCCcccccCC---ceEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEE
Q psy14542 237 DESVILPCSAQGNPLPTIKWYKQDSPVEESD---RIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQY 308 (371)
Q Consensus 237 g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~---~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 308 (371)
|+.+.|.|.+.|.|.|.|+|+++|.++.... .....++.|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus 1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v 75 (76)
T cd05868 1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRKVDGDTIIFSKVQERSSAVYQCNASNEYGYLLANAFVNV 75 (76)
T ss_pred CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceEEecCCEEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEe
Confidence 6789999999999999999999999875432 22344568999999999999999999999999999999887
No 36
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.60 E-value=1.3e-14 Score=95.84 Aligned_cols=74 Identities=22% Similarity=0.498 Sum_probs=66.3
Q ss_pred eecCCeEEEEEEeecCCCCceEEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEE
Q psy14542 234 VKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQY 308 (371)
Q Consensus 234 ~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 308 (371)
+.+|+.+.|.|.+.+. .+.+.|+++|.++....++...++.|.|.++..+|+|.|+|.|.|..|.....+.|.|
T Consensus 6 ~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~~v~V 79 (79)
T cd04973 6 AHPGDLLQLRCRLRDD-VQSINWTKDGVQLGENNRTRITGEEVQIKDAVPRDSGLYACVTSSPSGSDTTYFSVNV 79 (79)
T ss_pred ecCCCCEEEEEEecCC-CceEEEeeCCcCCCCCceEEEeCCEEEECCCChhhCEEEEEEEeCCCCcccEEEEEeC
Confidence 7899999999999886 5689999999999887777777788999999999999999999999999888877764
No 37
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.59 E-value=1e-14 Score=99.72 Aligned_cols=86 Identities=37% Similarity=0.643 Sum_probs=74.3
Q ss_pred cceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccCCceEEe----cceEEEeccCCCCCeEEEEEEEcCC
Q psy14542 222 AAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI----GSSLSISHVEESDSGVWNCVANNSE 297 (371)
Q Consensus 222 p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~a~n~~ 297 (371)
|.+...+.... +..|+.+.|.|.+.+.|.+++.|++++..+..+.++... ..+|.|.++..+|+|.|+|.|.|..
T Consensus 1 P~~~~~~~~~~-v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~ 79 (90)
T PF07679_consen 1 PVFTKKPKDVT-VKEGESVTLECEVSGNPPPTVTWYKNGRPLTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNSS 79 (90)
T ss_dssp EEEEEESSEEE-EETTSEEEEEEEEEESSSSEEEEEETTEEEESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEETT
T ss_pred CEEEEecCCEE-EeCCCEEEEEEEEEeCCCCcccccccccceeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEECC
Confidence 44555566666 999999999999999999999999999999887776632 3579999999999999999999999
Q ss_pred CCceeEEEEEE
Q psy14542 298 GQDKMQLFIQY 308 (371)
Q Consensus 298 g~~~~~~~l~v 308 (371)
|..+.++.|.|
T Consensus 80 g~~~~~~~l~V 90 (90)
T PF07679_consen 80 GEATASVNLTV 90 (90)
T ss_dssp EEEEEEEEEEE
T ss_pred CEEEEEEEEEC
Confidence 99999988876
No 38
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.59 E-value=7.4e-15 Score=95.32 Aligned_cols=69 Identities=26% Similarity=0.451 Sum_probs=58.6
Q ss_pred EEEEEEeecCCCCceEEEeCCcccccC-CceEEe-cc----eEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEE
Q psy14542 240 VILPCSAQGNPLPTIKWYKQDSPVEES-DRIQRI-GS----SLSISHVEESDSGVWNCVANNSEGQDKMQLFIQY 308 (371)
Q Consensus 240 ~~l~C~~~~~p~~~v~W~~~~~~~~~~-~~~~~~-~~----~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 308 (371)
+.|.|.+.|.|.|.+.|++++..+... .++... ++ .|.|.++..+|+|.|+|.|.|..|..+.++.|.|
T Consensus 1 v~l~C~v~G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05893 1 VRLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV 75 (75)
T ss_pred CEEEEEEeEecCCEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence 478999999999999999999988653 444432 21 6999999999999999999999999999888865
No 39
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.59 E-value=1.3e-14 Score=95.73 Aligned_cols=75 Identities=17% Similarity=0.300 Sum_probs=63.5
Q ss_pred CeEEEEEEeec--CCCCceEEEeCCccccc---CCceEE-----ecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEE
Q psy14542 238 ESVILPCSAQG--NPLPTIKWYKQDSPVEE---SDRIQR-----IGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQ 307 (371)
Q Consensus 238 ~~~~l~C~~~~--~p~~~v~W~~~~~~~~~---~~~~~~-----~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 307 (371)
+++.|.|.+.+ .+.+.|.|++||..+.. +.++.. ..+.|.|.+++..|+|+|+|.|.|..++...++.|.
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~ 80 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLI 80 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEEEE
Confidence 35789999976 44778999999998862 234443 346899999999999999999999999999999999
Q ss_pred EecCc
Q psy14542 308 YAHGK 312 (371)
Q Consensus 308 v~~~p 312 (371)
|..||
T Consensus 81 V~~pP 85 (85)
T cd05853 81 VRGPP 85 (85)
T ss_pred EecCC
Confidence 99887
No 40
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.59 E-value=1.7e-14 Score=99.48 Aligned_cols=86 Identities=24% Similarity=0.549 Sum_probs=67.2
Q ss_pred cceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccC-----CceEE----ecceEEEeccCCCCCeEEEEE
Q psy14542 222 AAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEES-----DRIQR----IGSSLSISHVEESDSGVWNCV 292 (371)
Q Consensus 222 p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~-----~~~~~----~~~~l~i~~~~~~d~G~Y~C~ 292 (371)
|.+...+.... +..|+.+.|.|.+.|.|.|.++|++++..+... .++.. ..+.|.|.++..+|+|.|+|.
T Consensus 3 p~i~~~~~~~~-~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C~ 81 (97)
T cd05869 3 PKITYVENQTA-MELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLCT 81 (97)
T ss_pred ceEEEccCceE-EEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEEE
Confidence 44444444443 566899999999999999999999988766432 22221 125799999999999999999
Q ss_pred EEcCCCCceeEEEEEE
Q psy14542 293 ANNSEGQDKMQLFIQY 308 (371)
Q Consensus 293 a~n~~g~~~~~~~l~v 308 (371)
|.|..|....++.|.|
T Consensus 82 A~N~~G~~~~~~~l~v 97 (97)
T cd05869 82 ASNTIGQDSQSMYLEV 97 (97)
T ss_pred EecCCCCeeEEEEEEC
Confidence 9999999999988865
No 41
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.59 E-value=3e-14 Score=97.23 Aligned_cols=75 Identities=23% Similarity=0.536 Sum_probs=62.3
Q ss_pred eecCCeEEEEEEeecCCC-CceEEEe-CCccccc-CCceEE-e----cceEEEeccCCCCCeEEEEEEEcCC-CCceeEE
Q psy14542 234 VKKDESVILPCSAQGNPL-PTIKWYK-QDSPVEE-SDRIQR-I----GSSLSISHVEESDSGVWNCVANNSE-GQDKMQL 304 (371)
Q Consensus 234 ~~~g~~~~l~C~~~~~p~-~~v~W~~-~~~~~~~-~~~~~~-~----~~~l~i~~~~~~d~G~Y~C~a~n~~-g~~~~~~ 304 (371)
+..|+++.|.|.+.|.|. |.+.|++ ++..+.. +.++.. . .++|.|.++..+|+|.|+|.|.|.. |....++
T Consensus 12 v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~~g~~~~s~ 91 (96)
T cd05865 12 ISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNEDEGESEATV 91 (96)
T ss_pred ECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcCCCCcEEEEE
Confidence 888999999999999995 7999998 6766655 334432 1 2589999999999999999999996 8888888
Q ss_pred EEEE
Q psy14542 305 FIQY 308 (371)
Q Consensus 305 ~l~v 308 (371)
.|.|
T Consensus 92 ~l~v 95 (96)
T cd05865 92 NVKI 95 (96)
T ss_pred EEEE
Confidence 8876
No 42
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.58 E-value=2.1e-14 Score=95.96 Aligned_cols=75 Identities=20% Similarity=0.352 Sum_probs=63.0
Q ss_pred CeEEEEEEeecCCCC--ceEEEeCCcccccC---CceE-----EecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEE
Q psy14542 238 ESVILPCSAQGNPLP--TIKWYKQDSPVEES---DRIQ-----RIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQ 307 (371)
Q Consensus 238 ~~~~l~C~~~~~p~~--~v~W~~~~~~~~~~---~~~~-----~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 307 (371)
+.++|.|.+.|+|.| .+.|++++..+... .++. ...++|.|.+++..|+|.|+|.|.|..|...+++.|.
T Consensus 1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L~ 80 (85)
T cd05854 1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASATLV 80 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEEEEEEEE
Confidence 358999999999987 58999999877542 2321 1346899999999999999999999999999999999
Q ss_pred EecCc
Q psy14542 308 YAHGK 312 (371)
Q Consensus 308 v~~~p 312 (371)
|..+|
T Consensus 81 V~~~P 85 (85)
T cd05854 81 VRGPP 85 (85)
T ss_pred EECCC
Confidence 98876
No 43
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=99.58 E-value=1.6e-14 Score=92.22 Aligned_cols=68 Identities=28% Similarity=0.489 Sum_probs=58.2
Q ss_pred CCeEEEEEEeecCCCCceEEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEE
Q psy14542 237 DESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFI 306 (371)
Q Consensus 237 g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 306 (371)
|+.+.|.|.+.|.|.|.|.|++++..+....++......|.|.++. |+|.|+|.|.|..|....++.|
T Consensus 1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~~~~~~~~~~L~i~~~~--d~G~Y~C~A~N~~G~~~~~a~l 68 (69)
T cd05739 1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKEDEMPVGRNVLELTNIY--ESANYTCVAISSLGMIEATAQV 68 (69)
T ss_pred CCeEEEEEEeeecCCCEEEEEECCEECCCccceecCccEEEEeccc--cCeeEEEEEEeCCCEEEEEEEE
Confidence 6789999999999999999999999887666555555679998874 7999999999999998877765
No 44
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.58 E-value=1.6e-14 Score=95.18 Aligned_cols=72 Identities=33% Similarity=0.561 Sum_probs=63.2
Q ss_pred CCeEEEEEEeecCCCCceEEEeCCcccccCCc---eEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEE
Q psy14542 237 DESVILPCSAQGNPLPTIKWYKQDSPVEESDR---IQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQY 308 (371)
Q Consensus 237 g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~---~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 308 (371)
|+.+.|.|.+.|.|.|.+.|++++..+..... ....++.|.|.++..+|+|.|+|.|.|..|.....+.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V 75 (76)
T cd04978 1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDPRRRVDGGTLILSNVQPNDTAVYQCNASNVHGYLLANAFVHV 75 (76)
T ss_pred CCeEEEEEEceeeCCCEEEEEECCEECCCCCCcceEEccCCEEEECCCChhhCEEEEEEEEccCCeEEEeEEEEE
Confidence 67899999999999999999999988765542 3345678999999999999999999999999999888876
No 45
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.58 E-value=1.1e-14 Score=92.74 Aligned_cols=68 Identities=28% Similarity=0.494 Sum_probs=56.9
Q ss_pred EEEEEEeecCCCCceEEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEE
Q psy14542 240 VILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQY 308 (371)
Q Consensus 240 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 308 (371)
+.|.|.+.|.|.|.+.|+++|.++....++ ..+..|.|.++..+|+|.|+|.|.|..|......++.+
T Consensus 1 ~~~~c~v~G~P~P~v~W~k~g~~l~~~~~~-~~~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l 68 (70)
T cd05864 1 VKIPVKYYGYPPPEVKWYKNGQLIVLNHTF-KRGVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQL 68 (70)
T ss_pred CEEEeEEEEeCCCEEEEEECCEECCCCCEE-ccCCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEE
Confidence 368999999999999999999998765443 24568999999999999999999999998766655544
No 46
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.57 E-value=1.9e-14 Score=92.51 Aligned_cols=69 Identities=28% Similarity=0.495 Sum_probs=58.9
Q ss_pred EEEEEEeecCCCCceEEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEE
Q psy14542 240 VILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQY 308 (371)
Q Consensus 240 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 308 (371)
+.|.|.+.|.|.|.+.|++++..+.........++.|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 69 (69)
T cd05725 1 VEFQCEVGGDPVPTVLWRKEDGELPKGRAEILDDKSLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV 69 (69)
T ss_pred CEEEEECccCCCCEEEEEECCccCCCCcEEEeeCCEEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence 478999999999999999998877554333345678999999999999999999999999988888765
No 47
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.57 E-value=2.1e-14 Score=93.85 Aligned_cols=70 Identities=33% Similarity=0.543 Sum_probs=60.9
Q ss_pred eEEEEEEeecCCCCceEEEeCCcccccCCceEEe----cceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEE
Q psy14542 239 SVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI----GSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQY 308 (371)
Q Consensus 239 ~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 308 (371)
.+.|.|.+.|.|.|.+.|+++|..+....++... .+.|.|.++..+|+|.|+|.|.|..|..+.++.|.|
T Consensus 1 ~~~l~c~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 74 (74)
T cd05748 1 SVRLEVPISGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV 74 (74)
T ss_pred CEEEEeeEeeeCCCeEEEEECCEEcCCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence 3689999999999999999999988666665532 357999999999999999999999999999888865
No 48
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.56 E-value=1.5e-14 Score=92.89 Aligned_cols=67 Identities=39% Similarity=0.692 Sum_probs=59.4
Q ss_pred EEEEEEeecCCCCceEEEeCCcccccCCceEE-ecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEE
Q psy14542 240 VILPCSAQGNPLPTIKWYKQDSPVEESDRIQR-IGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFI 306 (371)
Q Consensus 240 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 306 (371)
+.|.|.+.|.|.|.+.|++++..+....++.. .++.|.|.++..+|+|.|+|.|.|..|..+.++.|
T Consensus 1 v~L~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L 68 (69)
T cd05746 1 VQIPCSAQGDPEPTITWNKDGVQVTESGKFHISPEGYLAIRDVGVADQGRYECVARNTIGYASVSMVL 68 (69)
T ss_pred CEeEecceEeCCCEEEEEECCEECCCCCCEEECCCCEEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence 46899999999999999999998877766654 46789999999999999999999999998888766
No 49
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.56 E-value=2.2e-14 Score=92.59 Aligned_cols=69 Identities=30% Similarity=0.610 Sum_probs=59.1
Q ss_pred EEEEEEeecCCCCceEEEeCCcccccCCc-eEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEE
Q psy14542 240 VILPCSAQGNPLPTIKWYKQDSPVEESDR-IQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQY 308 (371)
Q Consensus 240 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~-~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 308 (371)
+.|.|.+.|.|.|.+.|++++..+..... ....+++|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus 1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05876 1 LVLECIAEGLPTPEVHWDRIDGPLSPNRTKKLNNNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTV 70 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCcCCCCCceeEEcCCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEE
Confidence 46899999999999999999987765432 2245578999999999999999999999999999888876
No 50
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.56 E-value=3.2e-14 Score=92.73 Aligned_cols=69 Identities=26% Similarity=0.388 Sum_probs=58.2
Q ss_pred EEEEEEeecCCCCceEEEeCCcccccC-CceEEe-c----ceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEE
Q psy14542 240 VILPCSAQGNPLPTIKWYKQDSPVEES-DRIQRI-G----SSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQY 308 (371)
Q Consensus 240 ~~l~C~~~~~p~~~v~W~~~~~~~~~~-~~~~~~-~----~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 308 (371)
+.|.|.+.|.|.|.+.|++++..+... .++... . .+|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus 1 v~L~C~v~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 75 (75)
T cd05744 1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV 75 (75)
T ss_pred CEEEEEEeecCCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence 478999999999999999999988743 444421 1 16999999999999999999999999998888865
No 51
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.56 E-value=3e-14 Score=96.02 Aligned_cols=75 Identities=31% Similarity=0.542 Sum_probs=64.8
Q ss_pred eecCCeEEEEEEeecCCCCceEEEeCCcccccCCceE-----EecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEE
Q psy14542 234 VKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQ-----RIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQY 308 (371)
Q Consensus 234 ~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~-----~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 308 (371)
+..|+.+.|.|.+.|.|.|.+.|+++|..+....+.. .....|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus 6 v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 85 (85)
T cd05857 6 VPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 85 (85)
T ss_pred cCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEEEEEEEEEC
Confidence 7889999999999999999999999999887654321 22347999999999999999999999999999888865
No 52
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.56 E-value=7.2e-14 Score=98.18 Aligned_cols=78 Identities=27% Similarity=0.452 Sum_probs=65.6
Q ss_pred cCCeEEEEEEeecCCCCceEEEeCCcccccC-CceEE--------ecceEEEeccC-CCCCeEEEEEEEcCCCCceeEEE
Q psy14542 236 KDESVILPCSAQGNPLPTIKWYKQDSPVEES-DRIQR--------IGSSLSISHVE-ESDSGVWNCVANNSEGQDKMQLF 305 (371)
Q Consensus 236 ~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~-~~~~~--------~~~~l~i~~~~-~~d~G~Y~C~a~n~~g~~~~~~~ 305 (371)
.|..+.|.|.+.|.|.+.+.|++++..+... .++.. ..+.|.|.++. .+|.|.|+|.|.|..|.....+.
T Consensus 22 ~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G~~~~~i~ 101 (109)
T cd05773 22 GSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALDYALFTCTAHNSLGEDSLDIQ 101 (109)
T ss_pred CCCEEEEEEECcccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCCCEEEEEEEEeCCccCcEEEE
Confidence 5688999999999999999999999887643 33321 13579999987 68999999999999999999999
Q ss_pred EEEecCcc
Q psy14542 306 IQYAHGKY 313 (371)
Q Consensus 306 l~v~~~p~ 313 (371)
|.|..+|.
T Consensus 102 L~~~~~p~ 109 (109)
T cd05773 102 LVSTSRPD 109 (109)
T ss_pred EEecCCCC
Confidence 99988773
No 53
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.55 E-value=4.7e-14 Score=95.91 Aligned_cols=75 Identities=21% Similarity=0.395 Sum_probs=64.6
Q ss_pred eecCCeEEEEEEeecCCCCceEEEeCCcccccCCceE----EecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEE
Q psy14542 234 VKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQ----RIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQY 308 (371)
Q Consensus 234 ~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 308 (371)
+..|+.+.|.|.+.|.|.|.+.|++++..+....... .....|.|.++..+|.|.|+|.|.|..|....++.|.|
T Consensus 12 v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~~~~~L~v 90 (90)
T cd04972 12 VYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQANVSVQVTV 90 (90)
T ss_pred EcCCCcEEEEEEEEEcCCCeEEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCceeEEEEEeC
Confidence 8899999999999999999999999998776544322 12357999999999999999999999999998888764
No 54
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.55 E-value=4.1e-14 Score=91.88 Aligned_cols=67 Identities=25% Similarity=0.566 Sum_probs=57.0
Q ss_pred EEEEEeecCCCCceEEEeCCcccccCCceE---------EecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEE
Q psy14542 241 ILPCSAQGNPLPTIKWYKQDSPVEESDRIQ---------RIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQ 307 (371)
Q Consensus 241 ~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~---------~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 307 (371)
.|.|.+.|+|.|+++|+++|..+..+.+.. ...+.|.|.++..+|+|.|+|.|+|..|+..+++.+.
T Consensus 2 ~i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 77 (79)
T cd05855 2 CIPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH 77 (79)
T ss_pred eEEEEEeEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence 367999999999999999999998765432 1235799999999999999999999999998887764
No 55
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.54 E-value=1e-13 Score=94.56 Aligned_cols=81 Identities=23% Similarity=0.465 Sum_probs=65.3
Q ss_pred eEEEeCCCcEEEeccCcEEEEEEecCCCC-CCeeEEEe-CCEEEee-C----------CeeEEEEccCCcCCCeEEEEEE
Q psy14542 12 SIEMSPSGQVVVDVGHRIELHCRVSPKRL-SSAKAWLK-DGLVLRR-N----------SDEVLVLDRVQREDAGMYQCHV 78 (371)
Q Consensus 12 ~~~~~p~~~~~~~~G~~v~l~C~~~~~~~-~~~~~W~~-~~~~~~~-~----------~~~~l~i~~~~~~d~G~Y~C~~ 78 (371)
++.+.|.. ..+.+|+++.|.|.+ .+.| .+.+.|++ ++..+.. . ..++|.|.+++.+|+|.|+|.|
T Consensus 2 ~~~~~p~~-~~v~~G~~v~l~C~v-~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A 79 (96)
T cd05865 2 QVDIVPSQ-GEISVGESKFFLCQV-AGEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVV 79 (96)
T ss_pred cEEEeCCc-cEECCCCeEEEEEEE-eCCCCCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEE
Confidence 56778888 789999999999965 5566 47999998 6765433 1 1368999999999999999999
Q ss_pred EcCC-CCeEEEEEEEEe
Q psy14542 79 SADD-DSAQMSAQVILG 94 (371)
Q Consensus 79 ~~~~-~~~~~~~~l~v~ 94 (371)
.|.. |...+++.|.|+
T Consensus 80 ~N~~~g~~~~s~~l~v~ 96 (96)
T cd05865 80 SNEDEGESEATVNVKIF 96 (96)
T ss_pred EcCCCCcEEEEEEEEEC
Confidence 9986 778888888763
No 56
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.54 E-value=5.6e-14 Score=94.46 Aligned_cols=75 Identities=19% Similarity=0.313 Sum_probs=62.7
Q ss_pred CeEEEEEEeecCCCC--ceEEEeCCcccccCC---ceE-----EecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEE
Q psy14542 238 ESVILPCSAQGNPLP--TIKWYKQDSPVEESD---RIQ-----RIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQ 307 (371)
Q Consensus 238 ~~~~l~C~~~~~p~~--~v~W~~~~~~~~~~~---~~~-----~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 307 (371)
+++.|.|.+.|.|.| .+.|+++|..+.... ++. ...+.|.|.+++.+|+|.|+|.|.|..|....++.|.
T Consensus 1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~ 80 (85)
T cd04970 1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADLI 80 (85)
T ss_pred CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEEEE
Confidence 468899999999887 579999998775432 111 2456899999999999999999999999999999999
Q ss_pred EecCc
Q psy14542 308 YAHGK 312 (371)
Q Consensus 308 v~~~p 312 (371)
|..+|
T Consensus 81 V~~pP 85 (85)
T cd04970 81 VRGPP 85 (85)
T ss_pred EECCC
Confidence 99876
No 57
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=99.53 E-value=2.3e-13 Score=100.72 Aligned_cols=125 Identities=20% Similarity=0.268 Sum_probs=85.2
Q ss_pred EEEEccCCcCCCeEEEEEEEcCCCCeEEEEEEEEecceeeEecCCceee-ecCCcEEEEEEecCCCC-CceEEEeeCCEE
Q psy14542 60 VLVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGELVEIASSNQVVV-DVGHRIELHCRVSPKRL-SSAKAWLKDGLV 137 (371)
Q Consensus 60 ~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~-~~g~~v~l~C~~~~~~~-~~~v~W~~~~~~ 137 (371)
+|.|.+++.+|+|.|.|.+.+..+.....+.|.|. .+|.+...+.... ..|+.+.|.|.+.+..+ .+++.|++++..
T Consensus 2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~-~~P~v~~~~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~ 80 (139)
T cd05771 2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVS-EPPRVRLSLEKLVSMIEEPQTLICHIAGYYPLDVQVEWTREPPG 80 (139)
T ss_pred eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEe-cCCceEEeCCCceeecCCcEEEEEEECCCCCCCeEEEEEECCCC
Confidence 79999999999999999999887888888999998 5666655444332 47899999999998755 368999998864
Q ss_pred eeeC--CeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeecc
Q psy14542 138 LRRN--SDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNK 197 (371)
Q Consensus 138 ~~~~--~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~ 197 (371)
.... ..............+| .+.+. +.|.+..-...+ ...|+|.+.+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~dg---------t~~~~--s~L~v~~~~~~~-g~~ytC~V~H~ 130 (139)
T cd05771 81 DSPPPVSLSNVSFSSHRQHQDG---------TYSLS--SHLTLEPGTEDA-GATYTCRVSHV 130 (139)
T ss_pred CccceeccCCeEecceEeCCCC---------CEEEE--EEEEecCCccCC-CCEEEEEEEcC
Confidence 2210 0000111112222333 33332 567776555555 77999999876
No 58
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.53 E-value=1.2e-13 Score=95.50 Aligned_cols=79 Identities=29% Similarity=0.566 Sum_probs=63.3
Q ss_pred eeeeeeecCCeEEEEEEeecCCCCceEEEeC--Cccccc-----CCceEEe----cceEEEeccCCCCCeEEEEEEEcCC
Q psy14542 229 HRILNVKKDESVILPCSAQGNPLPTIKWYKQ--DSPVEE-----SDRIQRI----GSSLSISHVEESDSGVWNCVANNSE 297 (371)
Q Consensus 229 ~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~--~~~~~~-----~~~~~~~----~~~l~i~~~~~~d~G~Y~C~a~n~~ 297 (371)
.+.. +.+|+.+.|.|.+.|.|.|.+.|+++ +..+.. ..++... ...|.|.++..+|+|.|+|.|.|..
T Consensus 9 ~~~~-~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~ 87 (98)
T cd05870 9 KNET-TVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSGRYDCEAASRI 87 (98)
T ss_pred ccEE-EcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCEEEEEEEeccC
Confidence 3444 88999999999999999999999994 333321 2344422 3579999999999999999999999
Q ss_pred CCceeEEEEEE
Q psy14542 298 GQDKMQLFIQY 308 (371)
Q Consensus 298 g~~~~~~~l~v 308 (371)
|....++.|.|
T Consensus 88 G~~~~~~~l~~ 98 (98)
T cd05870 88 GGHQKSMYLDI 98 (98)
T ss_pred CcceeEEEEeC
Confidence 99988888764
No 59
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.53 E-value=1.1e-13 Score=96.68 Aligned_cols=86 Identities=33% Similarity=0.533 Sum_probs=64.5
Q ss_pred cceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccC----C--ceEEecceEEEe-----ccCCCCCeEEE
Q psy14542 222 AAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEES----D--RIQRIGSSLSIS-----HVEESDSGVWN 290 (371)
Q Consensus 222 p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~----~--~~~~~~~~l~i~-----~~~~~d~G~Y~ 290 (371)
|.+...+.... +.+|+.+.|.|.+.|.|.|.+.|+++|..+... . +....++.+.+. .+..+|+|.|+
T Consensus 2 P~i~~~p~~~~-v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y~ 80 (100)
T cd07693 2 PRIVEHPSDLI-VSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVYV 80 (100)
T ss_pred CeEEecCceeE-EcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEEE
Confidence 55555566666 899999999999999999999999999887651 1 112233333222 23689999999
Q ss_pred EEEEcCCCC-ceeEEEEEE
Q psy14542 291 CVANNSEGQ-DKMQLFIQY 308 (371)
Q Consensus 291 C~a~n~~g~-~~~~~~l~v 308 (371)
|.|.|..|. .+..+.|.|
T Consensus 81 C~a~N~~G~~~s~~~~l~v 99 (100)
T cd07693 81 CVAHNSLGEAVSRNASLEV 99 (100)
T ss_pred EEEEccccceecceEEEEe
Confidence 999999999 677777765
No 60
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.53 E-value=6.8e-14 Score=91.82 Aligned_cols=70 Identities=24% Similarity=0.576 Sum_probs=56.7
Q ss_pred EEEEEEeecCCCCceEEEeCCcccccCC-ceE--EecceEEEeccCCCCCeEEEEEEEcCCCCce--eEEEEEEe
Q psy14542 240 VILPCSAQGNPLPTIKWYKQDSPVEESD-RIQ--RIGSSLSISHVEESDSGVWNCVANNSEGQDK--MQLFIQYA 309 (371)
Q Consensus 240 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~-~~~--~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~--~~~~l~v~ 309 (371)
++|.|.+.|.|.|.+.|+|+|..+.... ++. ..++.|.|.++..+|+|.|.|.|.|..|... ..+.|.|.
T Consensus 1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~v~ 75 (77)
T cd05760 1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVSSKERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLSII 75 (77)
T ss_pred CEEEEEeeecCCCcEEEEECCEECCCCCccEEEeCCCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEEEe
Confidence 4799999999999999999999886553 222 2345899999999999999999999999864 45666553
No 61
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.53 E-value=5.8e-14 Score=89.59 Aligned_cols=68 Identities=26% Similarity=0.365 Sum_probs=56.4
Q ss_pred EEEEEEeecCCCCceEEEeCCcccccC-CceEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEE
Q psy14542 240 VILPCSAQGNPLPTIKWYKQDSPVEES-DRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQ 307 (371)
Q Consensus 240 ~~l~C~~~~~p~~~v~W~~~~~~~~~~-~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 307 (371)
+.|.|.+.|.|.|++.|++++.++... .++...+.+|.|.++..+|+|.|+|.|.|..........+.
T Consensus 1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i~ 69 (72)
T cd07702 1 YRLTPKVKAFPAPEVIWLKDGLPAAEKCSRYHVDGYSLVIKDVTEEDAGIYTILLGIKQYNLFKNLTIT 69 (72)
T ss_pred CeEEeeEEEcCCCeEEEEECCEECCCCCcEEEeCCCEEEECcCCHHHCEEEEEEEEccccceEeeEEEE
Confidence 368999999999999999999988765 45555666899999999999999999999877665555443
No 62
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.53 E-value=1.2e-13 Score=94.06 Aligned_cols=75 Identities=27% Similarity=0.516 Sum_probs=65.2
Q ss_pred eecCCeEEEEEEeecCCCCceEEEeCCcccccCCceEE--ec---ceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEE
Q psy14542 234 VKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQR--IG---SSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQY 308 (371)
Q Consensus 234 ~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~--~~---~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 308 (371)
+.+|+.+.|.|.+.|.|.|.+.|++++..+....++.. .. .+|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus 13 v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~v~~ 92 (92)
T cd05891 13 IMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGETVDVTVSV 92 (92)
T ss_pred EcCCCEEEEEEEEEEeCCCeEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCceeeEEEEEC
Confidence 89999999999999999999999999988776655432 11 37999999999999999999999999998888765
No 63
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.53 E-value=1e-13 Score=95.79 Aligned_cols=78 Identities=29% Similarity=0.587 Sum_probs=64.2
Q ss_pred eeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccC-----CceEE----ecceEEEeccCCCCCeEEEEEEEcCCCCc
Q psy14542 230 RILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEES-----DRIQR----IGSSLSISHVEESDSGVWNCVANNSEGQD 300 (371)
Q Consensus 230 ~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~-----~~~~~----~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~ 300 (371)
+.. +.+|+.+.|.|.+.|.|.|.+.|++++..+... .++.. ..+.|.|.++..+|+|.|+|.|.|..|..
T Consensus 10 ~~~-~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~ 88 (96)
T cd05732 10 NQT-AVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCEASNRIGGD 88 (96)
T ss_pred cee-EecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEEEEEeCCCCc
Confidence 344 889999999999999999999999998665532 22222 22479999999999999999999999999
Q ss_pred eeEEEEEE
Q psy14542 301 KMQLFIQY 308 (371)
Q Consensus 301 ~~~~~l~v 308 (371)
..++.|.|
T Consensus 89 ~~s~~l~v 96 (96)
T cd05732 89 QQSMYLEV 96 (96)
T ss_pred EEEEEEeC
Confidence 88888764
No 64
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.53 E-value=1.3e-13 Score=94.20 Aligned_cols=80 Identities=16% Similarity=0.375 Sum_probs=68.1
Q ss_pred cceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC---------CeeEEEEccCCcCCCeEEEEEEEc
Q psy14542 10 SLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN---------SDEVLVLDRVQREDAGMYQCHVSA 80 (371)
Q Consensus 10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~---------~~~~l~i~~~~~~d~G~Y~C~~~~ 80 (371)
+|.+...|.. ..+.+|+.+.|.| ...+.|.+.+.|+|+|..+... ..++|.|.+++.+|+|.|+|.+.|
T Consensus 3 ~~~~~~~p~~-~~~~~G~~~~L~C-~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N 80 (92)
T cd05747 3 PATILTKPRS-LTVSEGESARFSC-DVDGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVVVEN 80 (92)
T ss_pred CCcccccCcc-EEEeCCCcEEEEE-EEeecCCCEEEEEECCEECCCCCcEEEEEcCCeeEEEECCCCcccCEeEEEEEEc
Confidence 5667777877 9999999999999 5567888999999998876533 346899999999999999999999
Q ss_pred CCCCeEEEEEE
Q psy14542 81 DDDSAQMSAQV 91 (371)
Q Consensus 81 ~~~~~~~~~~l 91 (371)
..|.....+.|
T Consensus 81 ~~G~~~~~~~l 91 (92)
T cd05747 81 SEGKQEAQFTL 91 (92)
T ss_pred CCCCEeEEEEe
Confidence 99988777765
No 65
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.53 E-value=1.2e-13 Score=93.95 Aligned_cols=77 Identities=29% Similarity=0.490 Sum_probs=64.6
Q ss_pred CCeEEEEEEeecCCCCceEEEeCCccc--------ccCCceEE-ecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEE
Q psy14542 237 DESVILPCSAQGNPLPTIKWYKQDSPV--------EESDRIQR-IGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQ 307 (371)
Q Consensus 237 g~~~~l~C~~~~~p~~~v~W~~~~~~~--------~~~~~~~~-~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 307 (371)
|+.+.|.|.+.|.|.|.+.|++++..+ ....++.. .++.|.|.++..+|+|.|+|.|.|..|.....+.|.
T Consensus 1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~ 80 (90)
T cd05726 1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSDVGYYICQTLNVAGSILTKAYLE 80 (90)
T ss_pred CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEECCCCeEEEeeCChhhCEEEEEEEEcCCCceEEEEEEE
Confidence 678999999999999999999988643 12344443 356899999999999999999999999999999999
Q ss_pred EecCcc
Q psy14542 308 YAHGKY 313 (371)
Q Consensus 308 v~~~p~ 313 (371)
|.....
T Consensus 81 V~~~~~ 86 (90)
T cd05726 81 VTDVIA 86 (90)
T ss_pred Eeeccc
Confidence 986544
No 66
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.52 E-value=2.1e-13 Score=92.09 Aligned_cols=79 Identities=24% Similarity=0.544 Sum_probs=63.4
Q ss_pred eeeeeeeecCCeEEEEEEeecCCCCceEEEeC-CcccccCCceEEe-cc---eEEEeccCCCCCeEEEEEEEcCCCCc-e
Q psy14542 228 KHRILNVKKDESVILPCSAQGNPLPTIKWYKQ-DSPVEESDRIQRI-GS---SLSISHVEESDSGVWNCVANNSEGQD-K 301 (371)
Q Consensus 228 ~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~-~~~~~~~~~~~~~-~~---~l~i~~~~~~d~G~Y~C~a~n~~g~~-~ 301 (371)
+.+.. +..|+.+.|.|.+.|.|. .+.|+++ +..+..+.++... ++ .|.|..+..+|+|.|+|.|.|..|.. .
T Consensus 7 ~~~~~-v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~ 84 (92)
T cd05866 7 LSKVE-LSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQE 84 (92)
T ss_pred ecceE-EcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCCcEEE
Confidence 34444 889999999999999998 9999984 6666666666532 23 79999999999999999999999985 6
Q ss_pred eEEEEEE
Q psy14542 302 MQLFIQY 308 (371)
Q Consensus 302 ~~~~l~v 308 (371)
.++.|.+
T Consensus 85 ~~i~l~~ 91 (92)
T cd05866 85 ATVVLEI 91 (92)
T ss_pred EEEEEEE
Confidence 6666654
No 67
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.52 E-value=6.2e-14 Score=91.43 Aligned_cols=68 Identities=26% Similarity=0.437 Sum_probs=59.4
Q ss_pred ccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC------CeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEEEEEE
Q psy14542 25 VGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN------SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVIL 93 (371)
Q Consensus 25 ~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 93 (371)
+|+.+.|.| ...+.|.+.+.|+|++..+... ..++|.|.+++.+|+|.|+|.+.|..|.....+.|.|
T Consensus 1 eG~~v~l~C-~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 74 (74)
T cd05745 1 EGQTVDFLC-EAQGYPQPVIAWTKGGSQLSVDRRHLVLSSGTLRISRVALHDQGQYECQAVNIVGSQRTVAQLTV 74 (74)
T ss_pred CCCeEEEEe-ECCEecCCEEEEEECCEECCCCCCeEEccCCeEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEeC
Confidence 689999999 5678899999999999876543 4568999999999999999999999999888888765
No 68
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=99.52 E-value=1e-13 Score=92.91 Aligned_cols=75 Identities=28% Similarity=0.508 Sum_probs=63.6
Q ss_pred eecCCeEEEEEEeecCCCCceEEEeCCcccccCCceEE--ecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEE
Q psy14542 234 VKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQR--IGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQY 308 (371)
Q Consensus 234 ~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 308 (371)
...|+.+.|.|.+.|.|.|.+.|++++..+........ ...+|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus 6 ~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~v 82 (82)
T cd05856 6 RPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGESRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINATYKVDV 82 (82)
T ss_pred ccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCccceecCceEEEEEccCChhhCEEEEEEEEcCCccEEEEEEEeC
Confidence 67799999999999999999999999988765443332 2357999999999999999999999999888887764
No 69
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.52 E-value=9.6e-14 Score=91.50 Aligned_cols=66 Identities=30% Similarity=0.585 Sum_probs=56.2
Q ss_pred EEEEeecCCCCceEEEeCCcccccCCceEE-----------ecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEE
Q psy14542 242 LPCSAQGNPLPTIKWYKQDSPVEESDRIQR-----------IGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQ 307 (371)
Q Consensus 242 l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~-----------~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 307 (371)
|.|.+.|.|.|.++|+++|..+..+.+... ..+.|.|.++..+|+|.|+|.|.|..|....++.|.
T Consensus 3 i~~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 79 (81)
T cd04971 3 IPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAH 79 (81)
T ss_pred EEEEeEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEee
Confidence 689999999999999999998877654321 134699999999999999999999999998887764
No 70
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.52 E-value=1.7e-13 Score=93.59 Aligned_cols=66 Identities=36% Similarity=0.697 Sum_probs=56.2
Q ss_pred cCCeEEEEEEeecCCCCceEEEeCCcccccCC--ceEEecceEEEeccC-CCCCeEEEEEEEcCCCCce
Q psy14542 236 KDESVILPCSAQGNPLPTIKWYKQDSPVEESD--RIQRIGSSLSISHVE-ESDSGVWNCVANNSEGQDK 301 (371)
Q Consensus 236 ~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~--~~~~~~~~l~i~~~~-~~d~G~Y~C~a~n~~g~~~ 301 (371)
.|+.+.|.|.+.|.|.|.++|+++|..+.... ++...++.|.|.++. .+|+|.|+|.|.|..|...
T Consensus 18 ~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~~~~~~~~~g~L~i~~~~~~~D~G~Y~C~A~N~~G~~~ 86 (94)
T cd05848 18 DEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSLIDGNLIISNPSEVKDSGRYQCLATNSIGSIL 86 (94)
T ss_pred CCCEEEEEEEeeecCCCEEEEEECCeECccCCCceEEeeCCeEEEccCCccCcCEEEEEEEEcCCCeEE
Confidence 47899999999999999999999999886443 444567889998875 6999999999999999863
No 71
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.52 E-value=1.7e-13 Score=93.54 Aligned_cols=81 Identities=30% Similarity=0.519 Sum_probs=70.4
Q ss_pred ceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC---------CeeEEEEccCCcCCCeEEEEEEEcC
Q psy14542 11 LSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN---------SDEVLVLDRVQREDAGMYQCHVSAD 81 (371)
Q Consensus 11 ~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~---------~~~~l~i~~~~~~d~G~Y~C~~~~~ 81 (371)
|.|...|.. +.+.+|+++.|.|.+. +.|.+.+.|++++..+... ...+|.|.+++.+|+|.|+|.+.+.
T Consensus 1 P~~~~~~~~-~~v~~G~~~~l~c~~~-~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~ 78 (90)
T PF07679_consen 1 PVFTKKPKD-VTVKEGESVTLECEVS-GNPPPTVTWYKNGRPLTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNS 78 (90)
T ss_dssp EEEEEESSE-EEEETTSEEEEEEEEE-ESSSSEEEEEETTEEEESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEET
T ss_pred CEEEEecCC-EEEeCCCEEEEEEEEE-eCCCCcccccccccceeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEEC
Confidence 466777766 9999999999999654 5588899999999998865 6789999999999999999999999
Q ss_pred CCCeEEEEEEEE
Q psy14542 82 DDSAQMSAQVIL 93 (371)
Q Consensus 82 ~~~~~~~~~l~v 93 (371)
.|.....+.|.|
T Consensus 79 ~g~~~~~~~l~V 90 (90)
T PF07679_consen 79 SGEATASVNLTV 90 (90)
T ss_dssp TEEEEEEEEEEE
T ss_pred CCEEEEEEEEEC
Confidence 888888888765
No 72
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.51 E-value=2.7e-13 Score=92.70 Aligned_cols=70 Identities=24% Similarity=0.470 Sum_probs=57.4
Q ss_pred CCeEEEEEEeecCCCCceEEEeCCcccccC--CceEEecceEEEeccC-CCCCeEEEEEEEcCCCCce-eEEEE
Q psy14542 237 DESVILPCSAQGNPLPTIKWYKQDSPVEES--DRIQRIGSSLSISHVE-ESDSGVWNCVANNSEGQDK-MQLFI 306 (371)
Q Consensus 237 g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~--~~~~~~~~~l~i~~~~-~~d~G~Y~C~a~n~~g~~~-~~~~l 306 (371)
|+.+.|.|.+.|.|.|+++|+++|..+... .++...++.|.|.++. .+|.|.|+|.|+|..|... ..+.|
T Consensus 19 g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l 92 (94)
T cd05850 19 EEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTLVAGNLVINNPQKARDAGSYQCLAINRCGTVVSREANL 92 (94)
T ss_pred CCeEEEEeEceeCCCCEEEEEECCEECccCCCceEEEECCeEEEccCCccCcCEEEEEEEEcCcCcEEEEEEEE
Confidence 468999999999999999999999988633 4555667889998755 6999999999999999864 34444
No 73
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.51 E-value=7.8e-14 Score=91.92 Aligned_cols=72 Identities=32% Similarity=0.404 Sum_probs=60.6
Q ss_pred CCeEEEEEEeecCCCCceEEEeCCcccccCCceEE----ecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEE
Q psy14542 237 DESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQR----IGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQY 308 (371)
Q Consensus 237 g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~----~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 308 (371)
|+++.|.|.+.|.|.|.+.|++++..+....++.. ..+.|.|.++..+|+|.|+|.|.|..|.......+.+
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~~~ 76 (78)
T cd05743 1 GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGIPDGIL 76 (78)
T ss_pred CCEEEEEEEEEEecCCEEEEEECCeECCCCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEEEecccEEE
Confidence 67899999999999999999999988776665542 1257999999999999999999999998876665544
No 74
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.51 E-value=2.3e-13 Score=93.63 Aligned_cols=75 Identities=21% Similarity=0.350 Sum_probs=64.5
Q ss_pred cEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC-------C-------eeEEEEccCCcCCCeEEEEEEEcCCCCe
Q psy14542 20 QVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN-------S-------DEVLVLDRVQREDAGMYQCHVSADDDSA 85 (371)
Q Consensus 20 ~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~-------~-------~~~l~i~~~~~~d~G~Y~C~~~~~~~~~ 85 (371)
.+.+.+|+++.|.|.+....|.+.+.|+|||..+... . ...|.|.+++.+|+|.|+|.|.|..|..
T Consensus 12 ~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~~ 91 (101)
T cd04975 12 TIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDASK 91 (101)
T ss_pred eEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCccE
Confidence 3789999999999965443889999999999888643 1 3679999999999999999999999998
Q ss_pred EEEEEEEEe
Q psy14542 86 QMSAQVILG 94 (371)
Q Consensus 86 ~~~~~l~v~ 94 (371)
..++.|.|.
T Consensus 92 ~~t~~L~V~ 100 (101)
T cd04975 92 SLTFELYVN 100 (101)
T ss_pred EEEEEEEEE
Confidence 888888875
No 75
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.51 E-value=2.3e-13 Score=91.17 Aligned_cols=72 Identities=19% Similarity=0.347 Sum_probs=63.1
Q ss_pred EEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC----------CeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEEE
Q psy14542 21 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN----------SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQ 90 (371)
Q Consensus 21 ~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~----------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~ 90 (371)
+.+.+|+.+.|.|. ..+.|.+.+.|+|++..+... ..+.|.|.++..+|+|.|+|.+.|..|....++.
T Consensus 5 ~~v~~G~~v~l~c~-~~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~ 83 (86)
T cd05894 5 IVVVAGNKLRLDVP-ISGEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGEDHASLF 83 (86)
T ss_pred EEEEcCCEEEEEee-EeecCCCeEEEEECCEECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcEEEEEE
Confidence 67899999999995 568899999999999887542 3468999999999999999999999999988888
Q ss_pred EEE
Q psy14542 91 VIL 93 (371)
Q Consensus 91 l~v 93 (371)
|.|
T Consensus 84 l~V 86 (86)
T cd05894 84 VKV 86 (86)
T ss_pred EEC
Confidence 765
No 76
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.51 E-value=2e-13 Score=93.15 Aligned_cols=75 Identities=23% Similarity=0.355 Sum_probs=63.2
Q ss_pred CCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC----------CeeEEEEccCCcCCCeEEEEEEEcCCCCeE
Q psy14542 17 PSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN----------SDEVLVLDRVQREDAGMYQCHVSADDDSAQ 86 (371)
Q Consensus 17 p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~----------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~ 86 (371)
|+. +.+.+|+++.|.|. ..+.|.+.+.|+|++..+... ...+|.|.+++.+|+|.|+|.+.|..|...
T Consensus 8 p~~-v~v~~G~~v~L~C~-v~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~ 85 (92)
T cd05737 8 PDV-VTIMEGKTLNLTCT-VFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGET 85 (92)
T ss_pred Cce-EEEeCCCcEEEEEE-EEecCCCeEEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcce
Confidence 444 78999999999995 567789999999998876532 235799999999999999999999999888
Q ss_pred EEEEEEE
Q psy14542 87 MSAQVIL 93 (371)
Q Consensus 87 ~~~~l~v 93 (371)
..+.|.|
T Consensus 86 ~~~~v~v 92 (92)
T cd05737 86 VDVTVSV 92 (92)
T ss_pred EEEEEeC
Confidence 8877764
No 77
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.51 E-value=2.5e-13 Score=92.00 Aligned_cols=81 Identities=20% Similarity=0.307 Sum_probs=67.3
Q ss_pred ceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC-----CeeEEEEccCCcCCCeEEEEEEEcCCCCe
Q psy14542 11 LSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN-----SDEVLVLDRVQREDAGMYQCHVSADDDSA 85 (371)
Q Consensus 11 ~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~-----~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~ 85 (371)
+.+...|.. ..+.+|+.+.|.|. ..+.|.+.+.|++++..+... ....|.|.+++.+|+|.|+|.+.|..|..
T Consensus 2 ~~~~~~p~~-~~~~~g~~v~l~C~-~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~ 79 (88)
T cd04968 2 SIIVVFPKD-TYALKGQNVTLECF-ALGNPVPQIKWRKVDGSMPSSAEISMSGAVLKIPNIQFEDEGTYECEAENIKGKD 79 (88)
T ss_pred CcEEECCCc-eEEeCCCcEEEEEE-eeEeCCCEEEEEECCCcCCCccEEEEeCCEEEECCCCcccCEEEEEEEEECCCcE
Confidence 345556666 88999999999994 567788999999977655432 45789999999999999999999999998
Q ss_pred EEEEEEEE
Q psy14542 86 QMSAQVIL 93 (371)
Q Consensus 86 ~~~~~l~v 93 (371)
.....|.|
T Consensus 80 ~~~~~l~V 87 (88)
T cd04968 80 THQGRIYV 87 (88)
T ss_pred EEEEEEEE
Confidence 88888876
No 78
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.50 E-value=1.8e-13 Score=89.38 Aligned_cols=72 Identities=25% Similarity=0.530 Sum_probs=60.0
Q ss_pred CCeEEEEEEeecCCCCceEEEe-CCcccccCCceE-EecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEE
Q psy14542 237 DESVILPCSAQGNPLPTIKWYK-QDSPVEESDRIQ-RIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQY 308 (371)
Q Consensus 237 g~~~~l~C~~~~~p~~~v~W~~-~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 308 (371)
|+.+.|.|.+.|.|.|.+.|++ ++..+....+.. ..+++|.|..+..+|+|.|+|.|.|..|..+.++.|.|
T Consensus 1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 74 (74)
T cd05764 1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLVYDNGTLDILITTVKDTGSFTCIASNAAGEATATVELHI 74 (74)
T ss_pred CCeEEEEEEccCcCCCEEEEEeCCCEEecCCCeEEEecCCEEEEEECChhhCEEEEEEEECCCCeEEEEEEEEC
Confidence 6789999999999999999997 555555444433 35678999999999999999999999999888877764
No 79
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.50 E-value=1.5e-13 Score=88.73 Aligned_cols=67 Identities=21% Similarity=0.421 Sum_probs=57.9
Q ss_pred cCcEEEEEEecCCCCCCeeEEEeCCEEEeeC------CeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEEEEEE
Q psy14542 26 GHRIELHCRVSPKRLSSAKAWLKDGLVLRRN------SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVIL 93 (371)
Q Consensus 26 G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 93 (371)
|+.+.|.|. ..+.|.+.+.|+|++..+... .+++|.|.+++.+|+|.|+|.|.|..|....+..|.|
T Consensus 1 G~~~~l~C~-~~g~P~p~v~W~k~~~~l~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~ 73 (73)
T cd05852 1 GGRVIIECK-PKAAPKPKFSWSKGTELLVNNSRISIWDDGSLEILNITKLDEGSYTCFAENNRGKANSTGVLSV 73 (73)
T ss_pred CCeEEEEEe-cceeCCCEEEEEeCCEecccCCCEEEcCCCEEEECcCChhHCEEEEEEEECCCCceeEEEEEEC
Confidence 788999995 457888999999998876543 5578999999999999999999999999988888764
No 80
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.50 E-value=2.7e-13 Score=92.18 Aligned_cols=78 Identities=19% Similarity=0.299 Sum_probs=64.9
Q ss_pred EeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC---------CeeEEEEccCCcCCCeEEEEEEEcCCCCe
Q psy14542 15 MSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN---------SDEVLVLDRVQREDAGMYQCHVSADDDSA 85 (371)
Q Consensus 15 ~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~---------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~ 85 (371)
+.|.....+.+|+.+.|.|. ..+.|.+.+.|++++..+... ....|.|.+++.+|.|.|+|.|.|..|..
T Consensus 4 v~~p~~~~v~~G~~v~l~C~-~~G~P~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~ 82 (90)
T cd04972 4 VDGPNATVVYEGGTATIRCT-AEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQA 82 (90)
T ss_pred ccCCcCEEEcCCCcEEEEEE-EEEcCCCeEEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCce
Confidence 44444477999999999995 457899999999999876432 34589999999999999999999999998
Q ss_pred EEEEEEEE
Q psy14542 86 QMSAQVIL 93 (371)
Q Consensus 86 ~~~~~l~v 93 (371)
...+.|.|
T Consensus 83 ~~~~~L~v 90 (90)
T cd04972 83 NVSVQVTV 90 (90)
T ss_pred eEEEEEeC
Confidence 88887764
No 81
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.50 E-value=2.5e-13 Score=92.35 Aligned_cols=70 Identities=27% Similarity=0.585 Sum_probs=57.8
Q ss_pred CCeEEEEEEeecCCCCceEEEeCCccccc-CCceEEecceEEEeccC-CCCCeEEEEEEEcCCCCce-eEEEE
Q psy14542 237 DESVILPCSAQGNPLPTIKWYKQDSPVEE-SDRIQRIGSSLSISHVE-ESDSGVWNCVANNSEGQDK-MQLFI 306 (371)
Q Consensus 237 g~~~~l~C~~~~~p~~~v~W~~~~~~~~~-~~~~~~~~~~l~i~~~~-~~d~G~Y~C~a~n~~g~~~-~~~~l 306 (371)
|..+.|.|.+.|.|.|+++|++++..+.. ..++...++.|.|.++. .+|+|.|+|.|.|..|... +.+.|
T Consensus 19 ~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l 91 (93)
T cd05849 19 EGKVSVNCRARANPFPIYKWRKNNLDIDLTNDRYSMVGGNLVINNPDKYKDAGRYVCIVSNIYGKVRSREATL 91 (93)
T ss_pred CCeEEEeCcCccCCCCEEEEEECCEEccCCCCeEEEECCEEEECcCCcCCCCEEEEEEEEeCcceEEEccEEE
Confidence 45799999999999999999999988753 45566677899999875 6899999999999999863 34444
No 82
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=99.50 E-value=9.7e-14 Score=90.04 Aligned_cols=69 Identities=29% Similarity=0.604 Sum_probs=58.2
Q ss_pred EEEEEEeecCCCCceEEEeCCcccccCCc-eEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEE
Q psy14542 240 VILPCSAQGNPLPTIKWYKQDSPVEESDR-IQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQY 308 (371)
Q Consensus 240 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~-~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 308 (371)
+.|.|.+.|.|.|.+.|++++..+..... ....++.|.|.++..+|+|.|+|.|.|..|..+.++.|.|
T Consensus 1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05731 1 LLLECIAEGLPTPEISWIKIGGELPADRTKFENFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV 70 (71)
T ss_pred CEEEEEeeEecCCeEEEEECCeECCCCceeEecCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence 46899999999999999999887654322 2234568999999999999999999999999998888876
No 83
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.50 E-value=1.4e-13 Score=89.58 Aligned_cols=69 Identities=38% Similarity=0.684 Sum_probs=57.7
Q ss_pred EEEEEEeecCCCCceEEEeCCcccc--cCCceEE-ecceEEEeccCCCCCeEEEEEEEcCCCCc-eeEEEEEE
Q psy14542 240 VILPCSAQGNPLPTIKWYKQDSPVE--ESDRIQR-IGSSLSISHVEESDSGVWNCVANNSEGQD-KMQLFIQY 308 (371)
Q Consensus 240 ~~l~C~~~~~p~~~v~W~~~~~~~~--~~~~~~~-~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~v 308 (371)
++|.|.+.|.|.|.+.|++++..+. ...++.. .++.|.|.++..+|+|.|+|.|.|..|.. +..+.|.|
T Consensus 1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v 73 (74)
T cd05738 1 ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQLRSGALQIENSEESDQGKYECVATNSAGTRYSAPANLYV 73 (74)
T ss_pred CEEEEEEeEecCCEEEEEECCEECccCCCCCEEEcCCcEEEECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence 4689999999999999999998776 3445543 45689999999999999999999999984 67777766
No 84
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.50 E-value=1.4e-13 Score=86.49 Aligned_cols=65 Identities=18% Similarity=0.274 Sum_probs=55.5
Q ss_pred EEEEEEecCCCCCCeeEEEeCCEEEeeC-CeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEEEEEEe
Q psy14542 29 IELHCRVSPKRLSSAKAWLKDGLVLRRN-SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVILG 94 (371)
Q Consensus 29 v~l~C~~~~~~~~~~~~W~~~~~~~~~~-~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~ 94 (371)
+.|.|. ..+.|.+.+.|+|||..+... ....|.|.++..+|+|.|+|.+.|..|....++.+.+.
T Consensus 1 ~~l~c~-v~g~P~P~v~W~kdg~~l~~~~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l~ 66 (67)
T cd05863 1 VKLPVK-VAAYPPPEFQWYKDGKLISGKHSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLELI 66 (67)
T ss_pred CEEEEE-EEEeCCCEEEEEECCEECcccCCcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEEE
Confidence 478994 568899999999999988643 56689999999999999999999999988777777654
No 85
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.49 E-value=2e-13 Score=92.85 Aligned_cols=75 Identities=25% Similarity=0.407 Sum_probs=63.9
Q ss_pred eecCCeEEEEEEeec-----CCCCceEEEeCCccccc----CCceEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEE
Q psy14542 234 VKKDESVILPCSAQG-----NPLPTIKWYKQDSPVEE----SDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQL 304 (371)
Q Consensus 234 ~~~g~~~~l~C~~~~-----~p~~~v~W~~~~~~~~~----~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~ 304 (371)
+.+|+.+.|.|.+.+ .|.+++.|++++..+.. ..++...++.|.|.++..+|+|.|+|.+.|..|.....+
T Consensus 11 v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~~~N~~g~~~~~~ 90 (94)
T cd05756 11 VLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQQKDLLWFLPAALEDSGLYTCVVRNSTYCMKVSI 90 (94)
T ss_pred EecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeeecCCeEEEccCCcccCeEEEEEEcCCCccEEEEE
Confidence 788999999999998 68899999999876432 244445567899999999999999999999999998888
Q ss_pred EEEE
Q psy14542 305 FIQY 308 (371)
Q Consensus 305 ~l~v 308 (371)
.|.|
T Consensus 91 ~L~v 94 (94)
T cd05756 91 SLTV 94 (94)
T ss_pred EEEC
Confidence 8765
No 86
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.49 E-value=3.1e-13 Score=91.43 Aligned_cols=73 Identities=25% Similarity=0.449 Sum_probs=62.1
Q ss_pred eecCCeEEEEEEeecCCCCceEEEeCCcccccCCceE--EecceEEEeccCCCCCeEEEEEEEcCCCCc-eeEEEEEE
Q psy14542 234 VKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQ--RIGSSLSISHVEESDSGVWNCVANNSEGQD-KMQLFIQY 308 (371)
Q Consensus 234 ~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~v 308 (371)
+.+|+++.|.|.+.|. .|.+.|++++..+... ++. ..+++|.|.++..+|+|.|.|.|.|..|.. +..+.|.|
T Consensus 15 v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~~-~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S~~~~L~V 90 (91)
T cd05740 15 PEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVPP-RLQLSNDNRTLTFNNVTRSDTGHYQCEASNEVSNMTSDPYILNV 90 (91)
T ss_pred cccCCcEEEEEEeCCC-CCEEEEEECCEECCCC-CEEEeCCCCEEEECcCChhhCEEEEEEEEcCCCCEEeeeEEEEe
Confidence 8899999999999999 9999999999887644 343 234689999999999999999999999985 55677766
No 87
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.49 E-value=2.5e-13 Score=88.94 Aligned_cols=69 Identities=28% Similarity=0.502 Sum_probs=56.8
Q ss_pred EEEEEEeecCCCCceEEEeCCcccc---cCCceE--EecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEE
Q psy14542 240 VILPCSAQGNPLPTIKWYKQDSPVE---ESDRIQ--RIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQY 308 (371)
Q Consensus 240 ~~l~C~~~~~p~~~v~W~~~~~~~~---~~~~~~--~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 308 (371)
+.|.|.+.|.|.|.++|++++.... ...++. ..++.|.|.++..+|+|.|+|.|.|..|.....+.|.|
T Consensus 1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V 74 (75)
T cd05763 1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQNTAGSISANATLTV 74 (75)
T ss_pred CEeEeecccccCCEEEEEeCCCccCCcccccceEEecCCCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEE
Confidence 3689999999999999999986422 222333 23468999999999999999999999999998888877
No 88
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.48 E-value=3.7e-13 Score=87.92 Aligned_cols=68 Identities=16% Similarity=0.437 Sum_probs=55.5
Q ss_pred ceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeCCeeEEEEccCCcCCCeEEEEEEEcC
Q psy14542 11 LSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHVSAD 81 (371)
Q Consensus 11 ~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~ 81 (371)
|.+.+.|+. ..+.+|++++|.|..........+.|+||+..+.. ...+|.|.++ .+|+|.|+|.+.+.
T Consensus 1 ~vv~~~P~~-~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~-~~~~l~i~~~-~~dsG~Y~C~a~~~ 68 (78)
T cd05752 1 AVVSLDPPW-TTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLET-TTNSYRIRAA-NNDSGEYRCQTQGS 68 (78)
T ss_pred CeEEeCCCC-eEeeCCCCEEEEEeCCCCCCCccEEEEECCEEeec-cCCeEEEeec-ccCCEEeEEECCCC
Confidence 357778888 89999999999996543322356999999998844 5678999999 99999999999875
No 89
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.48 E-value=5.6e-13 Score=91.93 Aligned_cols=82 Identities=18% Similarity=0.274 Sum_probs=66.2
Q ss_pred cceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC--------------CeeEEEEccCCcCCCeEEE
Q psy14542 10 SLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN--------------SDEVLVLDRVQREDAGMYQ 75 (371)
Q Consensus 10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~--------------~~~~l~i~~~~~~d~G~Y~ 75 (371)
+|+|...+.. ..+..|+.++|.|. ..+.|.+.+.|++++..+... ..+.|.|.+++.+|+|.|+
T Consensus 2 ~p~i~~~~~~-~~~~~g~~v~l~C~-~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~ 79 (97)
T cd05869 2 KPKITYVENQ-TAMELEEQITLTCE-ASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYL 79 (97)
T ss_pred CceEEEccCc-eEEEcCCCEEEEEE-eeEeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEE
Confidence 4667766766 56667899999995 557788999999987654321 2358999999999999999
Q ss_pred EEEEcCCCCeEEEEEEEE
Q psy14542 76 CHVSADDDSAQMSAQVIL 93 (371)
Q Consensus 76 C~~~~~~~~~~~~~~l~v 93 (371)
|.+.|..|.....+.|.|
T Consensus 80 C~A~N~~G~~~~~~~l~v 97 (97)
T cd05869 80 CTASNTIGQDSQSMYLEV 97 (97)
T ss_pred EEEecCCCCeeEEEEEEC
Confidence 999999999988888765
No 90
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.48 E-value=2.2e-13 Score=91.39 Aligned_cols=77 Identities=25% Similarity=0.454 Sum_probs=65.6
Q ss_pred EeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC-----CeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEE
Q psy14542 15 MSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN-----SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSA 89 (371)
Q Consensus 15 ~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~-----~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~ 89 (371)
..|.. ..+.+|+.+.|.|. ..+.|.+.+.|+|++..+... ....|.|.+++.+|+|.|+|.+.|..|.....+
T Consensus 4 ~~p~~-~~~~~G~~~~l~C~-~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~ 81 (85)
T cd05728 4 KVISD-TEADIGSSLRWECK-ASGNPRPAYRWLKNGQPLASENRIEVEAGDLRITKLSLSDSGMYQCVAENKHGTIYASA 81 (85)
T ss_pred ccCCc-cEEcCCCcEEEEEE-eeEeCCCEEEEEECCEECCCCCeEEEeCCEEEEeeCCHHHCEEEEEEEECCCCeEEEEE
Confidence 34555 78999999999994 567889999999999877543 456899999999999999999999999888888
Q ss_pred EEEE
Q psy14542 90 QVIL 93 (371)
Q Consensus 90 ~l~v 93 (371)
.|.|
T Consensus 82 ~l~V 85 (85)
T cd05728 82 ELAV 85 (85)
T ss_pred EEEC
Confidence 7764
No 91
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.47 E-value=7.2e-13 Score=91.23 Aligned_cols=83 Identities=16% Similarity=0.311 Sum_probs=67.2
Q ss_pred ceEEEeCCC-cEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC--------CeeEEEEccCCcCCCeEEEEEEEcC
Q psy14542 11 LSIEMSPSG-QVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN--------SDEVLVLDRVQREDAGMYQCHVSAD 81 (371)
Q Consensus 11 ~~~~~~p~~-~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~--------~~~~l~i~~~~~~d~G~Y~C~~~~~ 81 (371)
|.|...+.. ...+..|+.+.|.|. ..+.|.+.+.|+++|..+... ....|.|.+++.+|+|.|+|.+.|.
T Consensus 2 p~i~~~~~~~~~~~~~G~~v~L~C~-~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~ 80 (95)
T cd05730 2 PTIRARQSEVNATANLGQSVTLACD-ADGFPEPTMTWTKDGEPIESGEEKYSFNEDGSEMTILDVDKLDEAEYTCIAENK 80 (95)
T ss_pred CccccCCcccceEEeCCCCEEEEEe-ccEeCCCEEEEEECCEECcCCCCEEEEeCCCCEEEECCCChhhCEEEEEEEEcC
Confidence 444444432 257899999999995 567889999999998876532 3457999999999999999999999
Q ss_pred CCCeEEEEEEEEe
Q psy14542 82 DDSAQMSAQVILG 94 (371)
Q Consensus 82 ~~~~~~~~~l~v~ 94 (371)
.|.....+.|.|.
T Consensus 81 ~G~~~~~~~L~V~ 93 (95)
T cd05730 81 AGEQEAEIHLKVF 93 (95)
T ss_pred CCeEEEEEEEEEE
Confidence 9999888888886
No 92
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.46 E-value=3.8e-13 Score=91.23 Aligned_cols=73 Identities=22% Similarity=0.401 Sum_probs=57.3
Q ss_pred CCeEEEEEEeecCCCCceEEEeCC----cccccCC-ce-E-----------EecceEEEeccCCCCCeEEEEEEEcCCCC
Q psy14542 237 DESVILPCSAQGNPLPTIKWYKQD----SPVEESD-RI-Q-----------RIGSSLSISHVEESDSGVWNCVANNSEGQ 299 (371)
Q Consensus 237 g~~~~l~C~~~~~p~~~v~W~~~~----~~~~~~~-~~-~-----------~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~ 299 (371)
|+.+.|.|.+.|.|.|+|+|+|++ ..+.... .. . .....|.|.++..+|+|.|+|.|.|..|.
T Consensus 1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd04974 1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIGP 80 (90)
T ss_pred CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccCc
Confidence 678999999999999999999963 2221111 10 0 12347999999999999999999999999
Q ss_pred ceeEEEEEEe
Q psy14542 300 DKMQLFIQYA 309 (371)
Q Consensus 300 ~~~~~~l~v~ 309 (371)
...++.|.|.
T Consensus 81 ~~~sa~L~V~ 90 (90)
T cd04974 81 SHHSAWLTVL 90 (90)
T ss_pred ccCCEEEEeC
Confidence 9999988873
No 93
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.46 E-value=4.4e-13 Score=87.89 Aligned_cols=67 Identities=24% Similarity=0.438 Sum_probs=58.1
Q ss_pred cCcEEEEEEecCCCCCCeeEEEeCCEEEeeC--------CeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEEEEEE
Q psy14542 26 GHRIELHCRVSPKRLSSAKAWLKDGLVLRRN--------SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVIL 93 (371)
Q Consensus 26 G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~--------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 93 (371)
|+++.|.|. ..+.|.+.+.|+++|..+... ..++|.|.+++.+|+|.|+|.+.|..|.....+.|.|
T Consensus 1 G~~v~l~C~-~~G~P~p~i~W~k~g~~i~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 75 (76)
T cd05867 1 GETARLDCQ-VEGIPTPNITWSINGAPIEGTDPDPRRHVSSGALILTDVQPSDTAVYQCEARNRHGNLLANAHVHV 75 (76)
T ss_pred CCeEEEEEE-eeEeCCCeEEEEECCEECCCCCCCceEEeeCCEEEECCCChhhCEEEEEEEECCCCeEEEEEEEEE
Confidence 789999995 567788999999999877542 3568999999999999999999999999888888876
No 94
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.46 E-value=6.4e-13 Score=91.39 Aligned_cols=75 Identities=31% Similarity=0.500 Sum_probs=60.7
Q ss_pred eecCCeEEEEEEeecCCCCceEEEeCCcccccCCc--eE-EecceEEEecc-----CCCCCeEEEEEEEcC-CCCc-eeE
Q psy14542 234 VKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDR--IQ-RIGSSLSISHV-----EESDSGVWNCVANNS-EGQD-KMQ 303 (371)
Q Consensus 234 ~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~--~~-~~~~~l~i~~~-----~~~d~G~Y~C~a~n~-~g~~-~~~ 303 (371)
+..|+++.|.|.+.|.|.|.+.|+++|..+..... .. ..++.|.|..+ ..+|.|.|+|.|.|. .|.. +..
T Consensus 11 ~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~l~i~~v~~~~~~~~D~G~Y~C~a~N~~~G~~~s~~ 90 (95)
T cd05722 11 AVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPNGSLLITSVVHSKHNKPDEGFYQCVAQNDSLGSIVSRT 90 (95)
T ss_pred EcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEEccCCeEEEeeeeccCCCCCcCEEEEEEEECCccCcEEEee
Confidence 77899999999999999999999999998875432 22 34566777766 588999999999999 9986 556
Q ss_pred EEEEE
Q psy14542 304 LFIQY 308 (371)
Q Consensus 304 ~~l~v 308 (371)
+.|.|
T Consensus 91 ~~l~v 95 (95)
T cd05722 91 ARLTV 95 (95)
T ss_pred eEEeC
Confidence 66654
No 95
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.46 E-value=1e-12 Score=88.75 Aligned_cols=79 Identities=19% Similarity=0.371 Sum_probs=62.4
Q ss_pred eEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEe-CCEEEeeC---------CeeEEEEccCCcCCCeEEEEEEEcC
Q psy14542 12 SIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLK-DGLVLRRN---------SDEVLVLDRVQREDAGMYQCHVSAD 81 (371)
Q Consensus 12 ~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~-~~~~~~~~---------~~~~l~i~~~~~~d~G~Y~C~~~~~ 81 (371)
.+.+.|.. ..+.+|+++.|.|.+ .+.|. .+.|++ ++..+... ....|.|.+++.+|+|.|+|.|.|.
T Consensus 2 ~~~~~~~~-~~v~~G~~v~l~C~~-~G~P~-~v~W~k~~g~~~~~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~ 78 (92)
T cd05866 2 QVSISLSK-VELSVGESKFFTCTA-IGEPE-SIDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDA 78 (92)
T ss_pred eEEEEecc-eEEcCCCeEEEEEEE-EEeCC-eEEEEeCCCeEecCCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcC
Confidence 45667777 889999999999954 56776 899998 46555432 2348999999999999999999999
Q ss_pred CCCe-EEEEEEEE
Q psy14542 82 DDSA-QMSAQVIL 93 (371)
Q Consensus 82 ~~~~-~~~~~l~v 93 (371)
.|.. .+++.|.+
T Consensus 79 ~G~~~~~~i~l~~ 91 (92)
T cd05866 79 KGQTQEATVVLEI 91 (92)
T ss_pred CCcEEEEEEEEEE
Confidence 8875 56676665
No 96
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.46 E-value=7.3e-13 Score=89.50 Aligned_cols=75 Identities=31% Similarity=0.600 Sum_probs=61.8
Q ss_pred eecCCeEEEEEEe-ecCCCCceEEEeCCcccccC-CceE-EecceEEEeccCCCCCeEEEEEEEcCCCCc-eeEEEEEE
Q psy14542 234 VKKDESVILPCSA-QGNPLPTIKWYKQDSPVEES-DRIQ-RIGSSLSISHVEESDSGVWNCVANNSEGQD-KMQLFIQY 308 (371)
Q Consensus 234 ~~~g~~~~l~C~~-~~~p~~~v~W~~~~~~~~~~-~~~~-~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~v 308 (371)
+..|+++.|.|.+ .|.|.|.+.|++++..+... .++. ..++.|.|.++..+|+|.|+|.|.|..|.. +..+.|.|
T Consensus 8 ~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~l~V 86 (86)
T cd05724 8 VAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVDDGNLLIAEARKSDEGTYKCVATNMVGERESAAARLSV 86 (86)
T ss_pred EeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEEccCCEEEEeECCcccCEEEEEEEEeccCceeeeeEEEEC
Confidence 8899999999998 68999999999999877663 3333 335789999999999999999999999985 45555543
No 97
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=99.46 E-value=4.8e-13 Score=87.90 Aligned_cols=68 Identities=25% Similarity=0.528 Sum_probs=55.4
Q ss_pred eeeeeeecCCeEEEEEEeecCCCC-ceEEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCCCce
Q psy14542 229 HRILNVKKDESVILPCSAQGNPLP-TIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDK 301 (371)
Q Consensus 229 ~~~~~~~~g~~~~l~C~~~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~ 301 (371)
.+.. +..|+++.|.|.+.|.|.| +|.|+++|.++.. +.....+.|.|..+ .|.|.|.|.|.|..|...
T Consensus 6 ~~~~-v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~--~~~~~~s~L~i~~~--~d~g~Y~C~A~N~~G~~~ 74 (81)
T cd05749 6 EDLS-VTANTPFNLTCQAVGPPEPVEILWWQGGSPLGD--PPAPSPSVLNVPGL--NETSKFSCEAHNAKGVTT 74 (81)
T ss_pred CceE-EcCCCCEEEEEEeeeecCCeEEEEEECCEECCC--CCCCCCCEEEEccc--cCCeEEEEEEEeccCcEE
Confidence 3344 8999999999999999999 7999999998764 12234567888877 478999999999999754
No 98
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.44 E-value=6.9e-13 Score=87.51 Aligned_cols=71 Identities=25% Similarity=0.470 Sum_probs=58.0
Q ss_pred EEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC-----CeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEEEEEE
Q psy14542 21 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN-----SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVIL 93 (371)
Q Consensus 21 ~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~-----~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 93 (371)
..+.+|+.+.|.|.+.. . .+.+.|+|+|..+... ...+|.|.+++.+|+|.|+|.+.|..|.....+.|.|
T Consensus 4 ~~~~~G~~v~l~C~~~~-~-~~~v~W~k~g~~l~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~~v~V 79 (79)
T cd04973 4 YSAHPGDLLQLRCRLRD-D-VQSINWTKDGVQLGENNRTRITGEEVQIKDAVPRDSGLYACVTSSPSGSDTTYFSVNV 79 (79)
T ss_pred EEecCCCCEEEEEEecC-C-CceEEEeeCCcCCCCCceEEEeCCEEEECCCChhhCEEEEEEEeCCCCcccEEEEEeC
Confidence 77899999999997654 3 4579999999877643 3457999999999999999999998887776666654
No 99
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.44 E-value=1.1e-12 Score=88.72 Aligned_cols=76 Identities=25% Similarity=0.443 Sum_probs=61.9
Q ss_pred eCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC-------CeeEEEEccCCcCCCeEEEEEEEcCCCCe-EE
Q psy14542 16 SPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN-------SDEVLVLDRVQREDAGMYQCHVSADDDSA-QM 87 (371)
Q Consensus 16 ~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~-------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~ 87 (371)
.|.. ..+.+|+++.|.|.+..+.|.+.+.|++++..+... ..++|.|.+++.+|+|.|+|.+.|..|.. ..
T Consensus 2 ~p~~-~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~ 80 (86)
T cd05724 2 EPSD-TQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVDDGNLLIAEARKSDEGTYKCVATNMVGERESA 80 (86)
T ss_pred CCcc-EEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEEccCCEEEEeECCcccCEEEEEEEEeccCceeee
Confidence 4555 789999999999965567889999999998876652 45689999999999999999999988875 34
Q ss_pred EEEEE
Q psy14542 88 SAQVI 92 (371)
Q Consensus 88 ~~~l~ 92 (371)
.+.|.
T Consensus 81 ~~~l~ 85 (86)
T cd05724 81 AARLS 85 (86)
T ss_pred eEEEE
Confidence 44443
No 100
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.44 E-value=1.8e-12 Score=89.63 Aligned_cols=81 Identities=16% Similarity=0.242 Sum_probs=63.6
Q ss_pred cceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeC--CEEEeeC--------------CeeEEEEccCCcCCCeE
Q psy14542 10 SLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKD--GLVLRRN--------------SDEVLVLDRVQREDAGM 73 (371)
Q Consensus 10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~--~~~~~~~--------------~~~~l~i~~~~~~d~G~ 73 (371)
+|++.. +.. ..+.+|++++|.| ...+.|.+.+.|+|+ +..+... ...+|.|.+++.+|+|.
T Consensus 2 ~p~i~~-~~~-~~~~~G~~v~l~C-~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~ 78 (98)
T cd05870 2 QPHIIQ-LKN-ETTVENGAATLSC-KAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSGR 78 (98)
T ss_pred CCEEEe-ecc-EEEcCCCcEEEEE-ecccCCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCEE
Confidence 355543 555 7899999999999 456788999999993 3333210 34689999999999999
Q ss_pred EEEEEEcCCCCeEEEEEEEE
Q psy14542 74 YQCHVSADDDSAQMSAQVIL 93 (371)
Q Consensus 74 Y~C~~~~~~~~~~~~~~l~v 93 (371)
|+|.|.|..|.....+.|.|
T Consensus 79 Y~C~A~N~~G~~~~~~~l~~ 98 (98)
T cd05870 79 YDCEAASRIGGHQKSMYLDI 98 (98)
T ss_pred EEEEEeccCCcceeEEEEeC
Confidence 99999999998888887764
No 101
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=99.44 E-value=7.5e-13 Score=86.93 Aligned_cols=71 Identities=31% Similarity=0.562 Sum_probs=59.8
Q ss_pred EEEEEEeecCCCCceEEEeCCcccccCC--ceE--EecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEec
Q psy14542 240 VILPCSAQGNPLPTIKWYKQDSPVEESD--RIQ--RIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAH 310 (371)
Q Consensus 240 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~--~~~--~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~ 310 (371)
+.|.|.+.|.|.|.+.|++++..+.... ++. ..+..|.|.++..+|.|.|+|.|.|..|....++.|.|.+
T Consensus 1 ~~L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~ 75 (76)
T cd05736 1 ASLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVED 75 (76)
T ss_pred CEeEeEeeecCCCEEEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEEc
Confidence 3689999999999999999998876543 233 2235799999999999999999999999999999998863
No 102
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.44 E-value=1.1e-12 Score=88.32 Aligned_cols=72 Identities=19% Similarity=0.424 Sum_probs=61.0
Q ss_pred EEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC----------CeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEEE
Q psy14542 21 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN----------SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQ 90 (371)
Q Consensus 21 ~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~----------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~ 90 (371)
..+.+|+.+.|.|. ..+.|.+.+.|+|+|..+... ...+|.|.+++.+|+|.|+|.+.|..|.....+.
T Consensus 4 ~~v~~G~~~~L~C~-~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 82 (85)
T cd05857 4 HAVPAANTVKFRCP-AAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYH 82 (85)
T ss_pred EEcCCCCEEEEEEE-cCCCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEEEEEEE
Confidence 45889999999995 566788999999999876543 2457999999999999999999999999888888
Q ss_pred EEE
Q psy14542 91 VIL 93 (371)
Q Consensus 91 l~v 93 (371)
|.|
T Consensus 83 l~v 85 (85)
T cd05857 83 LDV 85 (85)
T ss_pred EEC
Confidence 765
No 103
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.44 E-value=8e-13 Score=86.43 Aligned_cols=68 Identities=22% Similarity=0.437 Sum_probs=58.6
Q ss_pred cCcEEEEEEecCCCCCCeeEEEeCCEEEeeC--------CeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEEEEEEe
Q psy14542 26 GHRIELHCRVSPKRLSSAKAWLKDGLVLRRN--------SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVILG 94 (371)
Q Consensus 26 G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~--------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~ 94 (371)
|+.+.|.|. ..+.|.+.|.|+|+|..+... ....|.|.+++.+|+|.|+|.|.|..|....++.|.|.
T Consensus 1 g~~~~l~C~-a~G~P~P~i~W~k~g~~i~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~ 76 (76)
T cd05868 1 GEDGTLICR-ANGNPKPSISWLTNGVPIEIAPTDPSRKVDGDTIIFSKVQERSSAVYQCNASNEYGYLLANAFVNVL 76 (76)
T ss_pred CCCEEEEEE-eeEeCCCeEEEEECCEEccccCCCceEEecCCEEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEeC
Confidence 788999995 567899999999999887532 33579999999999999999999999999998888773
No 104
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.44 E-value=1.4e-12 Score=90.15 Aligned_cols=77 Identities=23% Similarity=0.321 Sum_probs=62.6
Q ss_pred eeeeeeecCCeEEEEEEeecCCCC-ceEEEeCCcccccC--CceEEec--------ceEEEeccCC-CCCeEEEEEEEcC
Q psy14542 229 HRILNVKKDESVILPCSAQGNPLP-TIKWYKQDSPVEES--DRIQRIG--------SSLSISHVEE-SDSGVWNCVANNS 296 (371)
Q Consensus 229 ~~~~~~~~g~~~~l~C~~~~~p~~-~v~W~~~~~~~~~~--~~~~~~~--------~~l~i~~~~~-~d~G~Y~C~a~n~ 296 (371)
.... +..|+.+.|.|.+.|.|.| .+.|++++..+... .++.... ++|.|.++.. +|.|.|.|.|.|.
T Consensus 9 ~~~~-~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~C~A~N~ 87 (98)
T cd05758 9 ATQY-AILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSYNCTAWNS 87 (98)
T ss_pred CcEE-EeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeEEEEEEcC
Confidence 3344 8899999999999999999 59999999877653 3444221 3799999998 4599999999999
Q ss_pred CCCceeEEEE
Q psy14542 297 EGQDKMQLFI 306 (371)
Q Consensus 297 ~g~~~~~~~l 306 (371)
.|.....+.|
T Consensus 88 ~G~~~~~~~L 97 (98)
T cd05758 88 FGSGTAIISL 97 (98)
T ss_pred CCcccEEEEe
Confidence 9998888766
No 105
>KOG3515|consensus
Probab=99.44 E-value=9.7e-13 Score=118.16 Aligned_cols=207 Identities=21% Similarity=0.287 Sum_probs=140.3
Q ss_pred eeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCc
Q psy14542 107 VVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDR 186 (371)
Q Consensus 107 ~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~ 186 (371)
.+..|+.|.|.|.+.+.++...+.|++.+..+.. ++....+..|......++.
T Consensus 18 ~~~~g~~v~l~C~v~~~pp~~~~eW~h~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~- 70 (741)
T KOG3515|consen 18 GLRLGEDVPLPCRVNSNPPEIDVEWYHSTSGEHG--------------------------RYATIADPTLVTTGDVRDT- 70 (741)
T ss_pred hhccCCcceeeeecCCCCCCcceEEEecCccccc--------------------------ccccccCCceeeecchhhh-
Confidence 4589999999999999888799999998876651 2223333567677766666
Q ss_pred cceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEee--cCCCCceEEEeCCcccc
Q psy14542 187 YRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQ--GNPLPTIKWYKQDSPVE 264 (371)
Q Consensus 187 ~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~--~~p~~~v~W~~~~~~~~ 264 (371)
.+.|.|.+.|.......... .+.+. .+|.......... ...+..+.+.|.+. +.|.+++.|..++....
T Consensus 71 ~~~~~c~a~ns~~~~~~~~~---~l~v~-----~~pa~~~~~~e~~-~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~ 141 (741)
T KOG3515|consen 71 VAELNCRAFNSVGMPSRCPM---ILDVD-----YPPACLPELGEIF-QVDKGVVQIICSAKVAGRPNPNLRWGFNNRAEL 141 (741)
T ss_pred hhhhhhhhcccccCceecce---eeccc-----cCccccccccchh-hhcCCeEEEEEeecCCCCCCcceeeeeccEEee
Confidence 89999999988222222222 45555 5555555544444 67788899999654 46778999998876332
Q ss_pred cCC------------ceEEecceEEEeccCCCCCeEEEEEEEcC---CCCceeEEEEEEecCcccccccceEEEEeeeec
Q psy14542 265 ESD------------RIQRIGSSLSISHVEESDSGVWNCVANNS---EGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEK 329 (371)
Q Consensus 265 ~~~------------~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~---~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~ 329 (371)
... ......+.+.+...+.++.|+|+|.|.|. .+.....+.+.+..+... +. +...
T Consensus 142 ~~~~~~~~~~~~a~gss~t~~s~l~~~v~Rka~~g~~tC~A~nr~s~~l~~~~~~~i~v~~~~~~--------~~-~~~~ 212 (741)
T KOG3515|consen 142 NAVNQRGRVGAGALGSSYTEPSLLKQTVSRKADNGNYTCPANNRNSPGLSFAKQLTIIVEAPCKG--------IG-ITGA 212 (741)
T ss_pred cccCCcccccccccCceeccccceeeEEEEecCCceeEcccccccCccccccceeEeeccccccc--------ce-ecch
Confidence 211 11123456888888899999999999994 444555566666554441 11 1111
Q ss_pred cccccccccccccceeeeeecCCeEEEeeeeec-CCCCccccC
Q psy14542 330 NKRLLSAAKMFEKHRILNVKKDESVILPCSAQG-NPLPTIKYR 371 (371)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g-~p~p~i~W~ 371 (371)
.. .. .+.+|+.+.|.|.+.| +|.++++|+
T Consensus 213 ~~-~q------------sF~~g~~inlvc~~~gg~P~~~~~w~ 242 (741)
T KOG3515|consen 213 QE-QQ------------SFTEGQTINLVCNAQGGNPSQQQTWY 242 (741)
T ss_pred hh-cC------------cccccceEEEEehhhcCCcchhhhhc
Confidence 11 11 6779999999998885 688999996
No 106
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=99.44 E-value=9.1e-13 Score=89.51 Aligned_cols=72 Identities=22% Similarity=0.421 Sum_probs=57.2
Q ss_pred CCeEEEEEEeecCCCCceEEEeC----CcccccCCc--eE--E---------ecceEEEeccCCCCCeEEEEEEEcCCCC
Q psy14542 237 DESVILPCSAQGNPLPTIKWYKQ----DSPVEESDR--IQ--R---------IGSSLSISHVEESDSGVWNCVANNSEGQ 299 (371)
Q Consensus 237 g~~~~l~C~~~~~p~~~v~W~~~----~~~~~~~~~--~~--~---------~~~~l~i~~~~~~d~G~Y~C~a~n~~g~ 299 (371)
|+.+.|.|.+.|.|.|.|+|+++ +..+..... .. . ..+.|.|.++..+|+|.|+|.|.|..|.
T Consensus 1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~ 80 (90)
T cd05858 1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIGI 80 (90)
T ss_pred CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCCc
Confidence 67899999999999999999984 333322211 11 0 1147999999999999999999999999
Q ss_pred ceeEEEEEE
Q psy14542 300 DKMQLFIQY 308 (371)
Q Consensus 300 ~~~~~~l~v 308 (371)
...++.|.|
T Consensus 81 ~~~~a~L~V 89 (90)
T cd05858 81 SHHSAWLTV 89 (90)
T ss_pred ccceEEEEE
Confidence 999988877
No 107
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.44 E-value=1.3e-12 Score=90.23 Aligned_cols=81 Identities=21% Similarity=0.231 Sum_probs=64.4
Q ss_pred cceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC--------------CeeEEEEccCCcCCCeEEE
Q psy14542 10 SLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN--------------SDEVLVLDRVQREDAGMYQ 75 (371)
Q Consensus 10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~--------------~~~~l~i~~~~~~d~G~Y~ 75 (371)
+|+|. .+.. ..+.+|+++.|.|. ..+.|.+.+.|++++..+... ....|.|.+++.+|+|.|+
T Consensus 2 ~P~i~-~~~~-~~~~~g~~v~l~C~-~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~ 78 (96)
T cd05732 2 QPKIT-YLEN-QTAVELEQITLTCE-AEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYD 78 (96)
T ss_pred Cccce-ecCc-eeEecCCcEEEEEE-EeEcCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeE
Confidence 45564 3444 68999999999995 456788999999987543311 3468999999999999999
Q ss_pred EEEEcCCCCeEEEEEEEE
Q psy14542 76 CHVSADDDSAQMSAQVIL 93 (371)
Q Consensus 76 C~~~~~~~~~~~~~~l~v 93 (371)
|.+.|..|....++.|.|
T Consensus 79 C~a~N~~G~~~~s~~l~v 96 (96)
T cd05732 79 CEASNRIGGDQQSMYLEV 96 (96)
T ss_pred EEEEeCCCCcEEEEEEeC
Confidence 999999999888887764
No 108
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.43 E-value=1.2e-12 Score=89.06 Aligned_cols=75 Identities=21% Similarity=0.364 Sum_probs=62.4
Q ss_pred CCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC----------CeeEEEEccCCcCCCeEEEEEEEcCCCCeE
Q psy14542 17 PSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN----------SDEVLVLDRVQREDAGMYQCHVSADDDSAQ 86 (371)
Q Consensus 17 p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~----------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~ 86 (371)
|.. +.+.+|+++.|.|.+ .+.|.+.+.|++++..+... ...+|.|.+++.+|+|.|+|.+.|..|...
T Consensus 8 p~~-v~v~eG~~v~L~C~v-~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~ 85 (92)
T cd05891 8 PDV-VTIMEGKTLNLTCTV-FGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGET 85 (92)
T ss_pred CCc-EEEcCCCEEEEEEEE-EEeCCCeEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCcee
Confidence 444 889999999999954 56788899999998765432 224799999999999999999999999988
Q ss_pred EEEEEEE
Q psy14542 87 MSAQVIL 93 (371)
Q Consensus 87 ~~~~l~v 93 (371)
..+.|.|
T Consensus 86 ~~~~v~~ 92 (92)
T cd05891 86 VDVTVSV 92 (92)
T ss_pred eEEEEEC
Confidence 8887764
No 109
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=99.43 E-value=2.5e-12 Score=95.17 Aligned_cols=114 Identities=16% Similarity=0.296 Sum_probs=80.6
Q ss_pred eEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecC-CC-C
Q psy14542 175 ELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGN-PL-P 252 (371)
Q Consensus 175 ~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-~ 252 (371)
+|.|.+++..| +|.|.|.+.+. .+...... .|.|. .+|.+...+.... ...|+.+.|.|.+.|. |. +
T Consensus 2 sL~i~~v~~~D-~G~Y~C~~~~~-~~~~~~~~---~l~v~-----~~P~v~~~~~~~~-~~~~~~~~L~C~a~g~~P~~~ 70 (139)
T cd05771 2 SLTLPGLTVHD-EGTYICSVSTP-PHQAQQII---QLSVS-----EPPRVRLSLEKLV-SMIEEPQTLICHIAGYYPLDV 70 (139)
T ss_pred eEEECCCCHHH-CEEEEEEEEcc-CcceeeEE---EEEEe-----cCCceEEeCCCce-eecCCcEEEEEEECCCCCCCe
Confidence 68899999999 99999999887 66666666 78887 6777766555443 4478899999999985 54 4
Q ss_pred ceEEEeCCccccc-----CCc----eE-------EecceEEEeccCCCCCeEEEEEEEcCCCC
Q psy14542 253 TIKWYKQDSPVEE-----SDR----IQ-------RIGSSLSISHVEESDSGVWNCVANNSEGQ 299 (371)
Q Consensus 253 ~v~W~~~~~~~~~-----~~~----~~-------~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~ 299 (371)
+|.|++++..... ... .. ...+.|.+.....++...|+|.+.+....
T Consensus 71 ~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~~l~ 133 (139)
T cd05771 71 QVEWTREPPGDSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHVSLE 133 (139)
T ss_pred EEEEEECCCCCccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcCCCC
Confidence 8999999864221 110 11 11235666655566677999999876543
No 110
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.43 E-value=7.6e-13 Score=85.72 Aligned_cols=64 Identities=19% Similarity=0.371 Sum_probs=53.9
Q ss_pred EEEEEEecCCCCCCeeEEEeCCEEEeeC-----------CeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEEEEEE
Q psy14542 29 IELHCRVSPKRLSSAKAWLKDGLVLRRN-----------SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVIL 93 (371)
Q Consensus 29 v~l~C~~~~~~~~~~~~W~~~~~~~~~~-----------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 93 (371)
+.|.| ...+.|.|.+.|+|++..+... ...+|.|.+++.+|+|.|+|.+.|..|.......|.|
T Consensus 1 v~l~C-~v~G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05892 1 VKLEC-QISAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV 75 (75)
T ss_pred CEEEE-EEEecCCCeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence 57999 4567899999999999887532 1237999999999999999999999999988888765
No 111
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=99.43 E-value=1.9e-12 Score=88.12 Aligned_cols=79 Identities=20% Similarity=0.429 Sum_probs=61.8
Q ss_pred eEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEe-CCEEEeeC----------CeeEEEEccCCcCCCeEEEEEEEc
Q psy14542 12 SIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLK-DGLVLRRN----------SDEVLVLDRVQREDAGMYQCHVSA 80 (371)
Q Consensus 12 ~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~-~~~~~~~~----------~~~~l~i~~~~~~d~G~Y~C~~~~ 80 (371)
++.+.|.. ..+..|+++.|.|.+. +.|. .+.|++ ++..+... ...+|.|.+++.+|+|.|+|.+.|
T Consensus 2 ~v~v~p~~-~~v~~G~~~~l~C~~~-G~p~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N 78 (92)
T cd04977 2 QVDIVPSQ-GEISVGESKFFLCQVI-GEPK-DISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATD 78 (92)
T ss_pred eEEEecCc-EEECCCCeEEEEEEeE-eeCC-eEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEc
Confidence 57788888 8999999999999664 4454 899998 55544331 345899999999999999999999
Q ss_pred CCC-CeEEEEEEEE
Q psy14542 81 DDD-SAQMSAQVIL 93 (371)
Q Consensus 81 ~~~-~~~~~~~l~v 93 (371)
..| ....++.|.|
T Consensus 79 ~~g~~~~~sv~l~~ 92 (92)
T cd04977 79 AKGTESEATVNLKI 92 (92)
T ss_pred CCCCcceeEEEEEC
Confidence 854 4566776653
No 112
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.43 E-value=1.1e-12 Score=85.34 Aligned_cols=67 Identities=19% Similarity=0.371 Sum_probs=58.0
Q ss_pred cCcEEEEEEecCCCCCCeeEEEeCCEEEeeC------CeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEEEEEE
Q psy14542 26 GHRIELHCRVSPKRLSSAKAWLKDGLVLRRN------SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVIL 93 (371)
Q Consensus 26 G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 93 (371)
|+.+.|.|. ..+.|.+.+.|++++..+... ...+|.|.+++.+|+|.|+|.+.|..|....++.|.|
T Consensus 1 G~~v~L~C~-~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 73 (73)
T cd04969 1 GGDVIIECK-PKAAPKPTISWSKGTELLTNSSRICIWPDGSLEILNVTKSDEGKYTCFAENFFGKANSTGSLSV 73 (73)
T ss_pred CCeEEEEEe-eeEcCCCEEEEEECCEEcccCCCEEECCCCeEEEccCChhHCEEEEEEEECCCCceEEEEEEEC
Confidence 789999996 467788999999999877543 4568999999999999999999999999888887765
No 113
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.43 E-value=1.5e-12 Score=89.73 Aligned_cols=73 Identities=21% Similarity=0.265 Sum_probs=63.0
Q ss_pred EEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC---------------CeeEEEEccCCcCCCeEEEEEEEcCCCCe
Q psy14542 21 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN---------------SDEVLVLDRVQREDAGMYQCHVSADDDSA 85 (371)
Q Consensus 21 ~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~---------------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~ 85 (371)
..+..|+.+.|.|. ..+.|.+.+.|+|||..+... ...+|.|.+++.+|+|.|+|.|.|..|..
T Consensus 13 ~~~~~~~~~~l~~~-v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~ 91 (101)
T cd05859 13 EFANLHEVKEFVVE-VEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVK 91 (101)
T ss_pred EEEecCCcEEEEEE-EEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceE
Confidence 67889999999995 567889999999999987643 12579999999999999999999999988
Q ss_pred EEEEEEEEe
Q psy14542 86 QMSAQVILG 94 (371)
Q Consensus 86 ~~~~~l~v~ 94 (371)
+.++.|.|.
T Consensus 92 ~~t~~l~V~ 100 (101)
T cd05859 92 SYTFALQIQ 100 (101)
T ss_pred EEEEEEEEE
Confidence 888888775
No 114
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.42 E-value=1.1e-12 Score=87.10 Aligned_cols=78 Identities=17% Similarity=0.244 Sum_probs=60.0
Q ss_pred EEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC-CeeEEEEccCCcCCCeEEEEEEEcCCCCe-EEEEEE
Q psy14542 14 EMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN-SDEVLVLDRVQREDAGMYQCHVSADDDSA-QMSAQV 91 (371)
Q Consensus 14 ~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~-~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l 91 (371)
.+.++. ..+.+|++++|.|....+.+...+.|+|++..+... ....|.|.+++.+|+|.|+|.+.+..+.. +..+.|
T Consensus 3 ~l~~p~-~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~~~~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~~s~~~~i 81 (83)
T cd05753 3 LLQVPS-RVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKYSHSNSNLSIPQATLSDSGSYHCSGIIGSYDYSSEPVSI 81 (83)
T ss_pred EEECCc-ceecCCCCEEEEeeCCCCCcceEEEEEECCeEccccCCCceEEECccCHHHCEEEEEEEEeCCceecCCCEEE
Confidence 344555 579999999999975455666789999999877543 46789999999999999999999877643 333444
Q ss_pred E
Q psy14542 92 I 92 (371)
Q Consensus 92 ~ 92 (371)
+
T Consensus 82 ~ 82 (83)
T cd05753 82 T 82 (83)
T ss_pred E
Confidence 3
No 115
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=99.42 E-value=3.1e-12 Score=87.05 Aligned_cols=74 Identities=23% Similarity=0.542 Sum_probs=57.6
Q ss_pred eecCCeEEEEEEeecCCCCceEEEe-CCcccccCCceEE-e----cceEEEeccCCCCCeEEEEEEEcCCC-CceeEEEE
Q psy14542 234 VKKDESVILPCSAQGNPLPTIKWYK-QDSPVEESDRIQR-I----GSSLSISHVEESDSGVWNCVANNSEG-QDKMQLFI 306 (371)
Q Consensus 234 ~~~g~~~~l~C~~~~~p~~~v~W~~-~~~~~~~~~~~~~-~----~~~l~i~~~~~~d~G~Y~C~a~n~~g-~~~~~~~l 306 (371)
+..|+.+.|.|.+.|.|. .+.|++ ++..+....++.. . .++|.|.++..+|+|.|+|.|.|..| ....++.|
T Consensus 12 v~~G~~~~l~C~~~G~p~-~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~~~~~sv~l 90 (92)
T cd04977 12 ISVGESKFFLCQVIGEPK-DISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKGTESEATVNL 90 (92)
T ss_pred ECCCCeEEEEEEeEeeCC-eEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCCCcceeEEEE
Confidence 889999999999999874 999997 5655554444331 1 24799999999999999999999965 45666666
Q ss_pred EE
Q psy14542 307 QY 308 (371)
Q Consensus 307 ~v 308 (371)
.|
T Consensus 91 ~~ 92 (92)
T cd04977 91 KI 92 (92)
T ss_pred EC
Confidence 43
No 116
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.41 E-value=2.2e-12 Score=87.27 Aligned_cols=71 Identities=20% Similarity=0.395 Sum_probs=58.7
Q ss_pred EEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC------CeeEEEEccCCcCCCeEEEEEEEcCCCCe-EEEEEEEE
Q psy14542 21 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN------SDEVLVLDRVQREDAGMYQCHVSADDDSA-QMSAQVIL 93 (371)
Q Consensus 21 ~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~v 93 (371)
..+.+|++++|.|.+ .+. .+.+.|++++..+... ...+|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|
T Consensus 13 ~~v~~g~~v~l~C~a-~g~-~p~i~W~kng~~l~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S~~~~L~V 90 (91)
T cd05740 13 QPPEDNQPVTLTCEA-EGQ-ATYIWWVNNGSLLVPPRLQLSNDNRTLTFNNVTRSDTGHYQCEASNEVSNMTSDPYILNV 90 (91)
T ss_pred cccccCCcEEEEEEe-CCC-CCEEEEEECCEECCCCCEEEeCCCCEEEECcCChhhCEEEEEEEEcCCCCEEeeeEEEEe
Confidence 679999999999954 556 8899999998876433 44689999999999999999999999875 44666665
No 117
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=99.41 E-value=7.4e-13 Score=86.90 Aligned_cols=66 Identities=27% Similarity=0.567 Sum_probs=54.7
Q ss_pred EEEEEEeec-CCCCceEEEeCCcccccCCceE-------EecceEEEeccCCCCCeEEEEEEEcCCCCceeEEE
Q psy14542 240 VILPCSAQG-NPLPTIKWYKQDSPVEESDRIQ-------RIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLF 305 (371)
Q Consensus 240 ~~l~C~~~~-~p~~~v~W~~~~~~~~~~~~~~-------~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 305 (371)
+.|.|.+.| .|.|.+.|++++..+....+.. ...++|.|.++..+|+|.|+|.|.|..|....++.
T Consensus 1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 74 (75)
T cd05750 1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVTAN 74 (75)
T ss_pred CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEEEe
Confidence 368999999 9999999999999887554322 12357999999999999999999999999877664
No 118
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=99.41 E-value=2.5e-12 Score=86.42 Aligned_cols=79 Identities=24% Similarity=0.372 Sum_probs=63.3
Q ss_pred EEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC---CeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEE
Q psy14542 13 IEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN---SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSA 89 (371)
Q Consensus 13 ~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~---~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~ 89 (371)
+.+.++....+.+|++++|.|....+.|.+.+.|++++..+... ..+.|.|.+++.+|+|.|.|.+.|..|.....+
T Consensus 3 ~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~~ 82 (85)
T cd05754 3 VTVEEPRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSRAMDFNGILTIRNVQLSDAGTYVCTGSNMLDTDEATA 82 (85)
T ss_pred EEecCCCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCcccccCCEEEECCCCHHHCEEEEEEEeccCCeEeEEE
Confidence 44445554789999999999976555688899999987654322 467899999999999999999999988877766
Q ss_pred EE
Q psy14542 90 QV 91 (371)
Q Consensus 90 ~l 91 (371)
.|
T Consensus 83 ~l 84 (85)
T cd05754 83 TL 84 (85)
T ss_pred EE
Confidence 55
No 119
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.40 E-value=2.3e-12 Score=84.73 Aligned_cols=67 Identities=24% Similarity=0.395 Sum_probs=58.3
Q ss_pred cCcEEEEEEecCCCCCCeeEEEeCCEEEeeC--------CeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEEEEEE
Q psy14542 26 GHRIELHCRVSPKRLSSAKAWLKDGLVLRRN--------SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVIL 93 (371)
Q Consensus 26 G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~--------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 93 (371)
|+.+.|.|. ..+.|.+.+.|++++..+... ....|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus 1 G~~~~l~C~-~~g~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V 75 (76)
T cd04978 1 GETGRLDCE-AEGIPQPTITWRLNGVPIEELPPDPRRRVDGGTLILSNVQPNDTAVYQCNASNVHGYLLANAFVHV 75 (76)
T ss_pred CCeEEEEEE-ceeeCCCEEEEEECCEECCCCCCcceEEccCCEEEECCCChhhCEEEEEEEEccCCeEEEeEEEEE
Confidence 789999995 567889999999999876432 4578999999999999999999999999888888876
No 120
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.39 E-value=2.3e-12 Score=85.03 Aligned_cols=68 Identities=28% Similarity=0.459 Sum_probs=57.5
Q ss_pred CcEEEEEEecC-CCCCCeeEEEeCCEEEee--C-----------CeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEEEEE
Q psy14542 27 HRIELHCRVSP-KRLSSAKAWLKDGLVLRR--N-----------SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVI 92 (371)
Q Consensus 27 ~~v~l~C~~~~-~~~~~~~~W~~~~~~~~~--~-----------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~ 92 (371)
+++.|.|.+.. ..+...|.|++||+.+.. . ..+.|.|.+++..|+|.|+|.|.+..+....+..|.
T Consensus 1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~ 80 (85)
T cd05853 1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLI 80 (85)
T ss_pred CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEEEE
Confidence 47899996553 455788999999998862 1 235799999999999999999999999999999999
Q ss_pred Ee
Q psy14542 93 LG 94 (371)
Q Consensus 93 v~ 94 (371)
|.
T Consensus 81 V~ 82 (85)
T cd05853 81 VR 82 (85)
T ss_pred Ee
Confidence 98
No 121
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.39 E-value=3.9e-12 Score=85.01 Aligned_cols=67 Identities=24% Similarity=0.400 Sum_probs=56.0
Q ss_pred CcEEEEEEecCCCCCC--eeEEEeCCEEEeeC-------------CeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEEEE
Q psy14542 27 HRIELHCRVSPKRLSS--AKAWLKDGLVLRRN-------------SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQV 91 (371)
Q Consensus 27 ~~v~l~C~~~~~~~~~--~~~W~~~~~~~~~~-------------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l 91 (371)
++++|.|. ..+.|.+ .+.|++++..+... ..++|.|.+++..|+|.|+|.|.|..|.....+.|
T Consensus 1 ~~~~L~C~-a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L 79 (85)
T cd05854 1 ENLTLQCH-ASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASATL 79 (85)
T ss_pred CcEEEEEE-EecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEEEEEEE
Confidence 46899994 4555655 68999999876431 24689999999999999999999999999999999
Q ss_pred EEe
Q psy14542 92 ILG 94 (371)
Q Consensus 92 ~v~ 94 (371)
.|.
T Consensus 80 ~V~ 82 (85)
T cd05854 80 VVR 82 (85)
T ss_pred EEE
Confidence 998
No 122
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.39 E-value=2.7e-12 Score=85.60 Aligned_cols=72 Identities=25% Similarity=0.469 Sum_probs=57.2
Q ss_pred CCeEEEEEEeecCCCCceEEEeCCc---cc--ccC---CceE-EecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEE
Q psy14542 237 DESVILPCSAQGNPLPTIKWYKQDS---PV--EES---DRIQ-RIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQ 307 (371)
Q Consensus 237 g~~~~l~C~~~~~p~~~v~W~~~~~---~~--~~~---~~~~-~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 307 (371)
|+.+.|.|.+.|.|.|.+.|++++. .+ ... .++. ...+.|.|.++..+|+|.|.|.|.|..|.....+.|.
T Consensus 1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~ 80 (81)
T cd05765 1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAGLYTCTARNSGGLLRANFPLS 80 (81)
T ss_pred CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCcccCEEEEEEEecCCceEEEEEEEe
Confidence 6789999999999999999999742 11 111 1111 2346899999999999999999999999999988886
Q ss_pred E
Q psy14542 308 Y 308 (371)
Q Consensus 308 v 308 (371)
|
T Consensus 81 v 81 (81)
T cd05765 81 V 81 (81)
T ss_pred C
Confidence 5
No 123
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.39 E-value=1.5e-12 Score=84.50 Aligned_cols=64 Identities=20% Similarity=0.341 Sum_probs=53.6
Q ss_pred EEEEEEecCCCCCCeeEEEeCCEEEeeC-----------CeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEEEEEE
Q psy14542 29 IELHCRVSPKRLSSAKAWLKDGLVLRRN-----------SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVIL 93 (371)
Q Consensus 29 v~l~C~~~~~~~~~~~~W~~~~~~~~~~-----------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 93 (371)
+.|.| ...+.|.|.+.|+|++..+... ....|.|.+++.+|+|.|+|.|.|..|..+.+..|.|
T Consensus 1 v~l~C-~v~G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V 75 (75)
T cd05893 1 VRLEC-RVSGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV 75 (75)
T ss_pred CEEEE-EEeEecCCEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence 57999 5578899999999998877532 1126999999999999999999999999988887764
No 124
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.39 E-value=3.5e-12 Score=85.91 Aligned_cols=69 Identities=19% Similarity=0.356 Sum_probs=58.8
Q ss_pred cCcEEEEEEecCCCCCCeeEEEeCCEEEeeC--------------CeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEEEE
Q psy14542 26 GHRIELHCRVSPKRLSSAKAWLKDGLVLRRN--------------SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQV 91 (371)
Q Consensus 26 G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~--------------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l 91 (371)
|+.++|.|.+ .+.|.+.+.|+|++..+... ...+|.|.++..+|+|.|+|.|.|..|.....+.|
T Consensus 1 g~~~~l~C~~-~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L 79 (88)
T cd05735 1 GQKKEMSCTA-HGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQL 79 (88)
T ss_pred CCeEEEEEEE-ECCCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEEE
Confidence 7899999965 46688899999998766432 12679999999999999999999999999999999
Q ss_pred EEec
Q psy14542 92 ILGG 95 (371)
Q Consensus 92 ~v~~ 95 (371)
.|.+
T Consensus 80 ~V~~ 83 (88)
T cd05735 80 TVQE 83 (88)
T ss_pred EEeC
Confidence 9983
No 125
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=99.39 E-value=2.9e-12 Score=85.84 Aligned_cols=72 Identities=18% Similarity=0.351 Sum_probs=58.4
Q ss_pred CCeEEEEEEeecC--CCCceEEEeCCcccccCCc---------eEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEE
Q psy14542 237 DESVILPCSAQGN--PLPTIKWYKQDSPVEESDR---------IQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLF 305 (371)
Q Consensus 237 g~~~~l~C~~~~~--p~~~v~W~~~~~~~~~~~~---------~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 305 (371)
|+.+.|.|.+.+. |.+.+.|.+++..+..... .....+.|.|.+++.+|+|.|+|.|.|..|....+..
T Consensus 1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~ 80 (84)
T cd05742 1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKESTK 80 (84)
T ss_pred CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEEEE
Confidence 6889999999998 8889999988765432211 0123458999999999999999999999999988888
Q ss_pred EEE
Q psy14542 306 IQY 308 (371)
Q Consensus 306 l~v 308 (371)
|.|
T Consensus 81 v~v 83 (84)
T cd05742 81 VNI 83 (84)
T ss_pred EEE
Confidence 876
No 126
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.39 E-value=1.9e-12 Score=84.59 Aligned_cols=73 Identities=21% Similarity=0.411 Sum_probs=55.6
Q ss_pred eeeeeeeeeeecCCeEEEEEEeecCCC-CceEEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCCCceeE
Q psy14542 225 MFEKHRILNVKKDESVILPCSAQGNPL-PTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQ 303 (371)
Q Consensus 225 ~~~~~~~~~~~~g~~~~l~C~~~~~p~-~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~ 303 (371)
...+.... +.+|++++|.|.+.+.|. ..+.|++||..+.. .++.|.|.++ .+|+|.|+|.|.|. ..+..
T Consensus 4 ~~~P~~~~-v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~------~~~~l~i~~~-~~dsG~Y~C~a~~~--~~S~~ 73 (78)
T cd05752 4 SLDPPWTT-IFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLET------TTNSYRIRAA-NNDSGEYRCQTQGS--SLSDP 73 (78)
T ss_pred EeCCCCeE-eeCCCCEEEEEeCCCCCCCccEEEEECCEEeec------cCCeEEEeec-ccCCEEeEEECCCC--cCCCC
Confidence 33444444 899999999999998876 46999999987732 3568999999 99999999999875 33334
Q ss_pred EEEE
Q psy14542 304 LFIQ 307 (371)
Q Consensus 304 ~~l~ 307 (371)
+.|.
T Consensus 74 v~l~ 77 (78)
T cd05752 74 VHLE 77 (78)
T ss_pred EEEe
Confidence 4443
No 127
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.38 E-value=2.3e-12 Score=87.62 Aligned_cols=73 Identities=18% Similarity=0.268 Sum_probs=59.5
Q ss_pred EEEeccCcEEEEEEecCC----CCCCeeEEEeCCEEEeeC---------CeeEEEEccCCcCCCeEEEEEEEcCCCCeEE
Q psy14542 21 VVVDVGHRIELHCRVSPK----RLSSAKAWLKDGLVLRRN---------SDEVLVLDRVQREDAGMYQCHVSADDDSAQM 87 (371)
Q Consensus 21 ~~~~~G~~v~l~C~~~~~----~~~~~~~W~~~~~~~~~~---------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~ 87 (371)
..+.+|+++.|.|.+... .|.+.+.|||++..+... ....|.|.+++.+|+|.|+|.+.|..|..+.
T Consensus 9 ~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~~~N~~g~~~~ 88 (94)
T cd05756 9 SYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQQKDLLWFLPAALEDSGLYTCVVRNSTYCMKV 88 (94)
T ss_pred EEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeeecCCeEEEccCCcccCeEEEEEEcCCCccEEE
Confidence 578899999999954433 578899999988653210 3568999999999999999999999998888
Q ss_pred EEEEEE
Q psy14542 88 SAQVIL 93 (371)
Q Consensus 88 ~~~l~v 93 (371)
.+.|.|
T Consensus 89 ~~~L~v 94 (94)
T cd05756 89 SISLTV 94 (94)
T ss_pred EEEEEC
Confidence 887764
No 128
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.38 E-value=5.8e-12 Score=87.92 Aligned_cols=82 Identities=26% Similarity=0.441 Sum_probs=63.1
Q ss_pred cceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC-----------CeeEE---EE--ccCCcCCCeE
Q psy14542 10 SLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN-----------SDEVL---VL--DRVQREDAGM 73 (371)
Q Consensus 10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~-----------~~~~l---~i--~~~~~~d~G~ 73 (371)
+|.+...|.. ..+.+|+.+.|.| ...+.|.+.+.|+|+|..+... ..+.+ .+ ..++.+|+|.
T Consensus 1 ~P~i~~~p~~-~~v~~G~~~~l~C-~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~ 78 (100)
T cd07693 1 PPRIVEHPSD-LIVSKGDPATLNC-KAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGV 78 (100)
T ss_pred CCeEEecCce-eEEcCCCeEEEEe-eCCcCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEE
Confidence 4678888888 8999999999999 5567788999999999887651 11222 22 2347899999
Q ss_pred EEEEEEcCCCC-eEEEEEEEE
Q psy14542 74 YQCHVSADDDS-AQMSAQVIL 93 (371)
Q Consensus 74 Y~C~~~~~~~~-~~~~~~l~v 93 (371)
|+|.+.|..|. .+..+.|.|
T Consensus 79 Y~C~a~N~~G~~~s~~~~l~v 99 (100)
T cd07693 79 YVCVAHNSLGEAVSRNASLEV 99 (100)
T ss_pred EEEEEEccccceecceEEEEe
Confidence 99999999998 566677665
No 129
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.38 E-value=2.2e-12 Score=83.24 Aligned_cols=65 Identities=26% Similarity=0.512 Sum_probs=54.7
Q ss_pred cEEEEEEecCCCCCCeeEEEeCCEEEeeC------CeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEEEEEE
Q psy14542 28 RIELHCRVSPKRLSSAKAWLKDGLVLRRN------SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVIL 93 (371)
Q Consensus 28 ~v~l~C~~~~~~~~~~~~W~~~~~~~~~~------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 93 (371)
.+.|.|.+ .+.|.+.+.|+|++..+... ....|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus 1 ~v~l~C~~-~G~P~p~v~W~k~g~~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V 71 (71)
T cd05723 1 DVIFECEV-TGKPTPTVKWVKNGDMVIPSDYFKIVKEHNLQVLGLVKSDEGFYQCIAENDVGNVQASAQLII 71 (71)
T ss_pred CEEEEEEE-EEeCCCEEEEEECCeECCCCCCEEEEecCCEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence 47899954 67899999999999876543 3456889999999999999999999999888888764
No 130
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=99.37 E-value=2.6e-12 Score=85.99 Aligned_cols=72 Identities=28% Similarity=0.479 Sum_probs=60.1
Q ss_pred EEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC-------CeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEEEEEE
Q psy14542 21 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN-------SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVIL 93 (371)
Q Consensus 21 ~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~-------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 93 (371)
+....|+++.|.|. ..+.|.+.+.|++++..+... ...+|.|.+++.+|+|.|+|.+.|..|.....+.|.|
T Consensus 4 ~~~~~G~~v~L~C~-~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~v 82 (82)
T cd05856 4 IARPVGSSVRLKCV-ASGNPRPDITWLKDNKPLTPTEIGESRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINATYKVDV 82 (82)
T ss_pred eeccCCCeEEEEEE-eeEeCCCcEEEEECCcCCcCCccceecCceEEEEEccCChhhCEEEEEEEEcCCccEEEEEEEeC
Confidence 45778999999995 556788899999998866432 3468999999999999999999999998887777764
No 131
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.37 E-value=2.5e-12 Score=82.78 Aligned_cols=65 Identities=20% Similarity=0.343 Sum_probs=54.6
Q ss_pred EEEEEEecCCCCCCeeEEEeCCEEEeeC-----CeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEEEEEEe
Q psy14542 29 IELHCRVSPKRLSSAKAWLKDGLVLRRN-----SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVILG 94 (371)
Q Consensus 29 v~l~C~~~~~~~~~~~~W~~~~~~~~~~-----~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~ 94 (371)
+.|.|. ..+.|.+.+.|+|+|..+... ...+|.|.+++.+|+|.|+|.+.|..|.....+.+.+.
T Consensus 1 ~~l~c~-v~g~P~p~v~W~k~g~~l~~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~~ 70 (71)
T cd04976 1 VRLPVK-VKAYPPPEIQWYKNGKLISEKNRTKKSGHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTLV 70 (71)
T ss_pred CEEEeE-EEEeCCCEEEEEECCEECCCCCEEEcCCCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEEE
Confidence 468995 467889999999999887644 56789999999999999999999999888777776653
No 132
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.37 E-value=2.2e-12 Score=82.23 Aligned_cols=64 Identities=17% Similarity=0.258 Sum_probs=53.1
Q ss_pred EEEEEEecCCCCCCeeEEEeCCEEEeeC----CeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEEEEEE
Q psy14542 29 IELHCRVSPKRLSSAKAWLKDGLVLRRN----SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVIL 93 (371)
Q Consensus 29 v~l~C~~~~~~~~~~~~W~~~~~~~~~~----~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 93 (371)
+.|.|. ..+.|.+.+.|+|||..+... ....|.|.++..+|+|.|+|.+.|..|.......+.+
T Consensus 1 ~~~~c~-v~G~P~P~v~W~k~g~~l~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l 68 (70)
T cd05864 1 VKIPVK-YYGYPPPEVKWYKNGQLIVLNHTFKRGVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQL 68 (70)
T ss_pred CEEEeE-EEEeCCCEEEEEECCEECCCCCEEccCCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEE
Confidence 468994 568899999999999988654 3457999999999999999999999987766655554
No 133
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.37 E-value=5.6e-12 Score=82.27 Aligned_cols=65 Identities=23% Similarity=0.391 Sum_probs=55.4
Q ss_pred cEEEEEEecCCCCCCeeEEEeCCEEEeeC---------CeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEEEEEE
Q psy14542 28 RIELHCRVSPKRLSSAKAWLKDGLVLRRN---------SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVIL 93 (371)
Q Consensus 28 ~v~l~C~~~~~~~~~~~~W~~~~~~~~~~---------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 93 (371)
.+.|.| ...+.|.+.+.|+|+|..+... ....|.|.+++.+|+|.|+|.+.|..|....++.|.|
T Consensus 1 ~~~l~c-~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V 74 (74)
T cd05748 1 SVRLEV-PISGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV 74 (74)
T ss_pred CEEEEe-eEeeeCCCeEEEEECCEEcCCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence 478999 5578899999999999887433 4568999999999999999999999999888888764
No 134
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=99.37 E-value=7.3e-12 Score=85.29 Aligned_cols=66 Identities=30% Similarity=0.641 Sum_probs=55.0
Q ss_pred cCCeEEEEEEeecCCCCceEEEeCCccccc--CCceEEecceEEEeccC-CCCCeEEEEEEEcCCCCce
Q psy14542 236 KDESVILPCSAQGNPLPTIKWYKQDSPVEE--SDRIQRIGSSLSISHVE-ESDSGVWNCVANNSEGQDK 301 (371)
Q Consensus 236 ~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~--~~~~~~~~~~l~i~~~~-~~d~G~Y~C~a~n~~g~~~ 301 (371)
.|+.+.|.|.+.|+|.|+++|++++..+.. ..++...++.|.|.++. .+|+|.|+|.|.|..|...
T Consensus 18 ~~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~G~~~ 86 (91)
T cd04967 18 DEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSLVGGNLVISNPSKAKDAGRYQCLASNIVGTVL 86 (91)
T ss_pred CCCEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCEEEECCEEEEecCCccCCCEEEEEEEEcCCCEEE
Confidence 446799999999999999999999988743 34555667889998876 5899999999999999753
No 135
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.36 E-value=2.9e-12 Score=82.67 Aligned_cols=64 Identities=25% Similarity=0.413 Sum_probs=54.5
Q ss_pred EEEEEEecCCCCCCeeEEEeCCEEEeeC------CeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEEEEEE
Q psy14542 29 IELHCRVSPKRLSSAKAWLKDGLVLRRN------SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVIL 93 (371)
Q Consensus 29 v~l~C~~~~~~~~~~~~W~~~~~~~~~~------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 93 (371)
+.|.| ...+.|.+.+.|+|++..+... ...+|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus 1 ~~L~C-~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05876 1 LVLEC-IAEGLPTPEVHWDRIDGPLSPNRTKKLNNNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTV 70 (71)
T ss_pred CEEEE-EeeEecCCeEEEEECCcCCCCCceeEEcCCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEE
Confidence 47899 5578899999999987655432 5578999999999999999999999999888888876
No 136
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.36 E-value=4.9e-12 Score=82.38 Aligned_cols=64 Identities=20% Similarity=0.362 Sum_probs=53.6
Q ss_pred EEEEEEecCCCCCCeeEEEeCCEEEeeC-----------CeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEEEEEE
Q psy14542 29 IELHCRVSPKRLSSAKAWLKDGLVLRRN-----------SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVIL 93 (371)
Q Consensus 29 v~l~C~~~~~~~~~~~~W~~~~~~~~~~-----------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 93 (371)
+.|.| ...+.|.+.+.|+|++..+... ...+|.|.+++.+|+|.|+|.+.|..|.....+.|.|
T Consensus 1 v~L~C-~v~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 75 (75)
T cd05744 1 VRLEC-RVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV 75 (75)
T ss_pred CEEEE-EEeecCCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence 47999 4578899999999999887632 1236999999999999999999999999888887764
No 137
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.36 E-value=5e-12 Score=83.59 Aligned_cols=69 Identities=39% Similarity=0.595 Sum_probs=53.6
Q ss_pred EEEEEEeecCCCCceEEEeCCcccc--------cCCceE-EecceEEEeccCCCCCeEEEEEEEcCCCCc-eeEEEEEE
Q psy14542 240 VILPCSAQGNPLPTIKWYKQDSPVE--------ESDRIQ-RIGSSLSISHVEESDSGVWNCVANNSEGQD-KMQLFIQY 308 (371)
Q Consensus 240 ~~l~C~~~~~p~~~v~W~~~~~~~~--------~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~v 308 (371)
++|.|.+.|+|.|.+.|++++.... ...++. ..+++|.|.++..+|+|.|.|.|.|..|.. +..+.|.|
T Consensus 1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l~~ 79 (79)
T cd05734 1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVLEEDSGYYLCKVSNDVGADASKSMVLTV 79 (79)
T ss_pred CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEEecCCeEEECcCCcccCEEEEEEEEeCCCCCCceEEEEeC
Confidence 4799999999999999999754211 223443 356789999999999999999999999986 55555543
No 138
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.34 E-value=4.6e-12 Score=81.21 Aligned_cols=62 Identities=21% Similarity=0.426 Sum_probs=52.9
Q ss_pred EEEEEEecCCCCCCeeEEEeCCEEEeeC------CeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEEEE
Q psy14542 29 IELHCRVSPKRLSSAKAWLKDGLVLRRN------SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQV 91 (371)
Q Consensus 29 v~l~C~~~~~~~~~~~~W~~~~~~~~~~------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l 91 (371)
|.|.| ...+.|.+.+.|+|++..+... ..+.|.|.+++.+|+|.|+|.+.|..|.....+.|
T Consensus 1 v~L~C-~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L 68 (69)
T cd05746 1 VQIPC-SAQGDPEPTITWNKDGVQVTESGKFHISPEGYLAIRDVGVADQGRYECVARNTIGYASVSMVL 68 (69)
T ss_pred CEeEe-cceEeCCCEEEEEECCEECCCCCCEEECCCCEEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence 57999 4567889999999999877543 46689999999999999999999999988777665
No 139
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=99.34 E-value=8.4e-12 Score=84.25 Aligned_cols=75 Identities=23% Similarity=0.399 Sum_probs=61.7
Q ss_pred eecCCeEEEEEEeec-----CCCCceEEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEE
Q psy14542 234 VKKDESVILPCSAQG-----NPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQY 308 (371)
Q Consensus 234 ~~~g~~~~l~C~~~~-----~p~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 308 (371)
+..|....|.|...+ +|.|.+.|++++.++....+....++.|.|.++..+|+|.|+|.|.|..+.....+...+
T Consensus 7 ~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~~~~~~~L~I~~v~~~DsG~YtC~~~n~~~~~~~~~t~t~ 86 (92)
T cd05757 7 LFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKRFVKGSKLLIQNVTEEDAGNYTCKLTFTHNGKQYNVTRTI 86 (92)
T ss_pred EeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccEEecCCEEEEeeCChhhCEEEEEEEEecCCCEEEEEEEEE
Confidence 788999999998653 257899999999988766554446789999999999999999999999988766555444
No 140
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.34 E-value=2.3e-11 Score=83.13 Aligned_cols=74 Identities=24% Similarity=0.422 Sum_probs=57.5
Q ss_pred ceEEEeCCCcEEEecc---CcEEEEEEecCCCCCCeeEEEeCCEEEeeC-------CeeEEEEccCC-cCCCeEEEEEEE
Q psy14542 11 LSIEMSPSGQVVVDVG---HRIELHCRVSPKRLSSAKAWLKDGLVLRRN-------SDEVLVLDRVQ-REDAGMYQCHVS 79 (371)
Q Consensus 11 ~~~~~~p~~~~~~~~G---~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~-------~~~~l~i~~~~-~~d~G~Y~C~~~ 79 (371)
|.+...|.. ..+.+| +.++|.|. ..+.|.+.++|+++|..+... ..++|.|.++. ..|+|.|+|.|.
T Consensus 2 P~f~~~P~~-~~~~~~~~g~~v~l~C~-a~g~P~p~i~W~~~g~~l~~~~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~ 79 (94)
T cd05850 2 PVFEEQPSS-LLFPEGSPEEKVTLGCR-ARASPPATYRWKMNGTEIKFAPESRYTLVAGNLVINNPQKARDAGSYQCLAI 79 (94)
T ss_pred CeeEECCCC-EEecCCCCCCeEEEEeE-ceeCCCCEEEEEECCEECccCCCceEEEECCeEEEccCCccCcCEEEEEEEE
Confidence 445566776 666565 57999994 567889999999999887532 34678888765 599999999999
Q ss_pred cCCCCeE
Q psy14542 80 ADDDSAQ 86 (371)
Q Consensus 80 ~~~~~~~ 86 (371)
|..|...
T Consensus 80 N~~G~~~ 86 (94)
T cd05850 80 NRCGTVV 86 (94)
T ss_pred cCcCcEE
Confidence 9988764
No 141
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=99.34 E-value=1.3e-11 Score=81.76 Aligned_cols=63 Identities=19% Similarity=0.366 Sum_probs=55.6
Q ss_pred eecCCeEEEEEEeecCCCCceEEEeCCcccccC-CceEEecceEEEeccCCCCCeEEEEEEEcCC
Q psy14542 234 VKKDESVILPCSAQGNPLPTIKWYKQDSPVEES-DRIQRIGSSLSISHVEESDSGVWNCVANNSE 297 (371)
Q Consensus 234 ~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~-~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~ 297 (371)
+..|+++.|.|.+.+ +.+++.|++||.++..+ .++...++.|.|.++..+|+|.|+|.|.+..
T Consensus 8 v~~G~~v~L~C~~~~-~~~~i~W~~ng~~i~~~~~r~~~~~~~L~I~nv~~~DsG~Y~C~a~e~~ 71 (87)
T cd05873 8 FKLGNNAELKCSPKS-NLARVVWKFDGKVLTPESAKYLLYRDGLLIFNASEADAGRYQCLSVEKS 71 (87)
T ss_pred EECCCCEEEEEECCC-CCCeEEEEECCEECCCCCceEEEECCcEEEeCCCHHHCEEEEEEEEecc
Confidence 889999999999764 67899999999988766 5667778889999999999999999999865
No 142
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.33 E-value=1.4e-11 Score=84.19 Aligned_cols=74 Identities=19% Similarity=0.379 Sum_probs=58.1
Q ss_pred ceEEEeCCCcEEEe---ccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC-------CeeEEEEccCC-cCCCeEEEEEEE
Q psy14542 11 LSIEMSPSGQVVVD---VGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN-------SDEVLVLDRVQ-REDAGMYQCHVS 79 (371)
Q Consensus 11 ~~~~~~p~~~~~~~---~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~-------~~~~l~i~~~~-~~d~G~Y~C~~~ 79 (371)
|.+...|.. +.+. +|+.++|.|. ..+.|.+.+.|+|+|..+... .+++|.|.++. .+|+|.|+|.|.
T Consensus 2 P~f~~~p~~-~~~~~~~~g~~v~l~C~-~~G~P~P~i~W~k~g~~l~~~~~~~~~~~~g~L~i~~~~~~~D~G~Y~C~A~ 79 (94)
T cd05848 2 PVFVQEPDD-AIFPTDSDEKKVILNCE-ARGNPVPTYRWLRNGTEIDTESDYRYSLIDGNLIISNPSEVKDSGRYQCLAT 79 (94)
T ss_pred CeeEECCCc-EEccCCCCCCEEEEEEE-eeecCCCEEEEEECCeECccCCCceEEeeCCeEEEccCCccCcCEEEEEEEE
Confidence 456666766 5444 4789999995 577899999999999887532 34678898875 699999999999
Q ss_pred cCCCCeE
Q psy14542 80 ADDDSAQ 86 (371)
Q Consensus 80 ~~~~~~~ 86 (371)
|..|...
T Consensus 80 N~~G~~~ 86 (94)
T cd05848 80 NSIGSIL 86 (94)
T ss_pred cCCCeEE
Confidence 9988663
No 143
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.33 E-value=6.3e-12 Score=80.74 Aligned_cols=64 Identities=22% Similarity=0.391 Sum_probs=53.7
Q ss_pred EEEEEEecCCCCCCeeEEEeCCEEEeeC-----CeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEEEEEE
Q psy14542 29 IELHCRVSPKRLSSAKAWLKDGLVLRRN-----SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVIL 93 (371)
Q Consensus 29 v~l~C~~~~~~~~~~~~W~~~~~~~~~~-----~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 93 (371)
++|.|. ..+.|.+.+.|+|++..+... ...+|.|.+++.+|+|.|+|.+.|..|.....+.|.|
T Consensus 1 v~l~C~-~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 69 (69)
T cd05725 1 VEFQCE-VGGDPVPTVLWRKEDGELPKGRAEILDDKSLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV 69 (69)
T ss_pred CEEEEE-CccCCCCEEEEEECCccCCCCcEEEeeCCEEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence 479994 567889999999987665433 4668999999999999999999999998888877764
No 144
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=99.33 E-value=9.4e-12 Score=79.40 Aligned_cols=63 Identities=25% Similarity=0.443 Sum_probs=52.0
Q ss_pred cCcEEEEEEecCCCCCCeeEEEeCCEEEeeC-----CeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEEEE
Q psy14542 26 GHRIELHCRVSPKRLSSAKAWLKDGLVLRRN-----SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQV 91 (371)
Q Consensus 26 G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~-----~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l 91 (371)
|++++|.| ...+.|.+.|.|+|++..+... ....|.|.+++ |+|.|+|.|.|..|....++.|
T Consensus 1 G~~v~L~C-~a~G~P~P~v~W~k~g~~l~~~~~~~~~~~~L~i~~~~--d~G~Y~C~A~N~~G~~~~~a~l 68 (69)
T cd05739 1 GGSVNLTC-VAVGAPMPYVKWMKGGEELTKEDEMPVGRNVLELTNIY--ESANYTCVAISSLGMIEATAQV 68 (69)
T ss_pred CCeEEEEE-EeeecCCCEEEEEECCEECCCccceecCccEEEEeccc--cCeeEEEEEEeCCCEEEEEEEE
Confidence 78899999 5678899999999999876543 34578899874 8999999999999987776665
No 145
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=99.33 E-value=4.7e-12 Score=83.08 Aligned_cols=62 Identities=26% Similarity=0.598 Sum_probs=50.1
Q ss_pred EEEEEEeecCCCCceEEEeCCcccccC--CceE--EecceEEEeccCC----CCCeEEEEEEEcCCCCce
Q psy14542 240 VILPCSAQGNPLPTIKWYKQDSPVEES--DRIQ--RIGSSLSISHVEE----SDSGVWNCVANNSEGQDK 301 (371)
Q Consensus 240 ~~l~C~~~~~p~~~v~W~~~~~~~~~~--~~~~--~~~~~l~i~~~~~----~d~G~Y~C~a~n~~g~~~ 301 (371)
+.|.|.+.|.|.|+++|++++..+... .++. ..++.|.|..+.. +|+|.|+|.|.|..|...
T Consensus 1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~ 70 (77)
T cd05733 1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAI 70 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCCCCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEE
Confidence 468999999999999999999887543 2333 3457899988754 789999999999999753
No 146
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.33 E-value=1.3e-11 Score=82.83 Aligned_cols=67 Identities=25% Similarity=0.432 Sum_probs=55.8
Q ss_pred CcEEEEEEecCCCCCC--eeEEEeCCEEEeeC-------------CeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEEEE
Q psy14542 27 HRIELHCRVSPKRLSS--AKAWLKDGLVLRRN-------------SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQV 91 (371)
Q Consensus 27 ~~v~l~C~~~~~~~~~--~~~W~~~~~~~~~~-------------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l 91 (371)
+++.|.|.+ .+.|.+ .+.|+++|..+... ..++|.|.+++.+|+|.|+|.+.|..|.....+.|
T Consensus 1 e~~~L~C~~-~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l 79 (85)
T cd04970 1 ESITLQCHA-SHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADL 79 (85)
T ss_pred CcEEEEEEE-ecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEEE
Confidence 468999965 555655 67999999876522 34679999999999999999999999999999999
Q ss_pred EEe
Q psy14542 92 ILG 94 (371)
Q Consensus 92 ~v~ 94 (371)
.|.
T Consensus 80 ~V~ 82 (85)
T cd04970 80 IVR 82 (85)
T ss_pred EEE
Confidence 988
No 147
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=99.33 E-value=2.1e-11 Score=81.29 Aligned_cols=73 Identities=22% Similarity=0.447 Sum_probs=56.6
Q ss_pred CCeEEEEEEeecCCCCceEEEeCCcccccCC----ceE----EecceEEEeccCCCCCeEEEEEEEcCCC--CceeEEEE
Q psy14542 237 DESVILPCSAQGNPLPTIKWYKQDSPVEESD----RIQ----RIGSSLSISHVEESDSGVWNCVANNSEG--QDKMQLFI 306 (371)
Q Consensus 237 g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~----~~~----~~~~~l~i~~~~~~d~G~Y~C~a~n~~g--~~~~~~~l 306 (371)
|+++.|.|.+.+.|.+.+.|+++++...... +.. ...++|.|.+++.+|+|.|.|.|.|..+ ....++.|
T Consensus 1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~i 80 (84)
T cd05861 1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVNI 80 (84)
T ss_pred CCcEEEEEEEECCCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEEE
Confidence 6889999999999999999998776432111 111 1245799999999999999999999876 56777777
Q ss_pred EEe
Q psy14542 307 QYA 309 (371)
Q Consensus 307 ~v~ 309 (371)
.|.
T Consensus 81 ~V~ 83 (84)
T cd05861 81 TVH 83 (84)
T ss_pred EEe
Confidence 775
No 148
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.33 E-value=1.1e-11 Score=81.08 Aligned_cols=63 Identities=22% Similarity=0.575 Sum_probs=49.5
Q ss_pred EEEEEEeecCCCCceEEEeCCcccccC--CceE--EecceEEEeccCC----CCCeEEEEEEEcCCCCcee
Q psy14542 240 VILPCSAQGNPLPTIKWYKQDSPVEES--DRIQ--RIGSSLSISHVEE----SDSGVWNCVANNSEGQDKM 302 (371)
Q Consensus 240 ~~l~C~~~~~p~~~v~W~~~~~~~~~~--~~~~--~~~~~l~i~~~~~----~d~G~Y~C~a~n~~g~~~~ 302 (371)
+.|.|.+.|.|.|+++|++++..+... .++. ..+++|.|..+.. .|.|.|+|.|.|..|....
T Consensus 1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05874 1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVS 71 (77)
T ss_pred CEEEeeCcccCCCeEEEEECCeECCCcCCCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEe
Confidence 468999999999999999999876432 2333 2467888887764 3789999999999998544
No 149
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=99.32 E-value=1.2e-11 Score=80.85 Aligned_cols=63 Identities=30% Similarity=0.634 Sum_probs=49.5
Q ss_pred EEEEEEeecCCCCceEEEeCCcccc--cCCceE--EecceEEEeccC----CCCCeEEEEEEEcCCCCcee
Q psy14542 240 VILPCSAQGNPLPTIKWYKQDSPVE--ESDRIQ--RIGSSLSISHVE----ESDSGVWNCVANNSEGQDKM 302 (371)
Q Consensus 240 ~~l~C~~~~~p~~~v~W~~~~~~~~--~~~~~~--~~~~~l~i~~~~----~~d~G~Y~C~a~n~~g~~~~ 302 (371)
+.|.|.+.|+|.|.++|++++..+. ...++. ..+++|.|..+. .+|+|.|+|.|.|..|....
T Consensus 1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05875 1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALS 71 (77)
T ss_pred CEEEEeccccCCCEEEEEECCEEccCcCCCcEEEeCCCceEEEeccCCCCCCCCCEEEEEEEEeccceEEE
Confidence 3689999999999999999998653 334444 246789998764 24699999999999997543
No 150
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.32 E-value=2.3e-11 Score=85.45 Aligned_cols=84 Identities=17% Similarity=0.299 Sum_probs=65.0
Q ss_pred cceEEEeCCCcEEE---eccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC--------------CeeEEEEccCC-cCCC
Q psy14542 10 SLSIEMSPSGQVVV---DVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN--------------SDEVLVLDRVQ-REDA 71 (371)
Q Consensus 10 ~~~~~~~p~~~~~~---~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~--------------~~~~l~i~~~~-~~d~ 71 (371)
+|.+...|.....+ ..|+.++|.|. +.+.|.+.+.|+|+|..+... ....|.|.+++ .+|.
T Consensus 4 ~P~~~~~~~~~~~~~~~~~g~~v~L~C~-a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~ 82 (109)
T cd05773 4 APDLQKGPQLRKVASRGDGSSDANLVCQ-AQGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALDY 82 (109)
T ss_pred ccccccCCceEEEEEecCCCCEEEEEEE-CcccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCCC
Confidence 45555555531222 24678999995 567888999999999877532 13579999997 5899
Q ss_pred eEEEEEEEcCCCCeEEEEEEEEe
Q psy14542 72 GMYQCHVSADDDSAQMSAQVILG 94 (371)
Q Consensus 72 G~Y~C~~~~~~~~~~~~~~l~v~ 94 (371)
|.|+|.|.|..|.....+.|.|.
T Consensus 83 G~Y~C~A~N~~G~~~~~i~L~~~ 105 (109)
T cd05773 83 ALFTCTAHNSLGEDSLDIQLVST 105 (109)
T ss_pred EEEEEEEEeCCccCcEEEEEEec
Confidence 99999999999999999999987
No 151
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.32 E-value=8.5e-12 Score=81.85 Aligned_cols=65 Identities=20% Similarity=0.400 Sum_probs=52.6
Q ss_pred EEEEEEecCCCCCCeeEEEeCCEEEeeC--------CeeEEEEccCCcCCCeEEEEEEEcCCCCeE--EEEEEEEe
Q psy14542 29 IELHCRVSPKRLSSAKAWLKDGLVLRRN--------SDEVLVLDRVQREDAGMYQCHVSADDDSAQ--MSAQVILG 94 (371)
Q Consensus 29 v~l~C~~~~~~~~~~~~W~~~~~~~~~~--------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~--~~~~l~v~ 94 (371)
++|.|. ..+.|.+.+.|+|+|..+... ....|.|.+++.+|+|.|+|.+.|..|... ..+.|.|.
T Consensus 1 v~L~C~-~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~v~ 75 (77)
T cd05760 1 VTLRCH-IDGHPRPTYQWFRDGTPLSDGQGNYSVSSKERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLSII 75 (77)
T ss_pred CEEEEE-eeecCCCcEEEEECCEECCCCCccEEEeCCCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEEEe
Confidence 579995 567889999999999877543 345899999999999999999999988763 45666654
No 152
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.32 E-value=1.5e-11 Score=80.27 Aligned_cols=67 Identities=21% Similarity=0.456 Sum_probs=55.5
Q ss_pred cCcEEEEEEecCCCCCCeeEEEe-CCEEEeeC------CeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEEEEEE
Q psy14542 26 GHRIELHCRVSPKRLSSAKAWLK-DGLVLRRN------SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVIL 93 (371)
Q Consensus 26 G~~v~l~C~~~~~~~~~~~~W~~-~~~~~~~~------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 93 (371)
|+.+.|.|. ..+.|.+.+.|++ ++..+... ..++|.|.+++.+|+|.|+|.+.|..|.....+.|.|
T Consensus 1 G~~~~l~C~-~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v 74 (74)
T cd05764 1 GQRATLRCK-ARGDPEPAIHWISPDGKLISNSSRTLVYDNGTLDILITTVKDTGSFTCIASNAAGEATATVELHI 74 (74)
T ss_pred CCeEEEEEE-ccCcCCCEEEEEeCCCEEecCCCeEEEecCCEEEEEECChhhCEEEEEEEECCCCeEEEEEEEEC
Confidence 789999995 5677899999997 56555432 4568999999999999999999999998888777764
No 153
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.32 E-value=2.1e-11 Score=83.78 Aligned_cols=78 Identities=27% Similarity=0.484 Sum_probs=60.6
Q ss_pred EEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC--------CeeEEEEccC-----CcCCCeEEEEEEEc
Q psy14542 14 EMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN--------SDEVLVLDRV-----QREDAGMYQCHVSA 80 (371)
Q Consensus 14 ~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~--------~~~~l~i~~~-----~~~d~G~Y~C~~~~ 80 (371)
...|.. ..+.+|+++.|.|. ..+.|.+.+.|+|+|..+... .+++|.|.++ +.+|+|.|+|.+.|
T Consensus 3 ~~~P~~-~~~~~g~~v~l~C~-v~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~l~i~~v~~~~~~~~D~G~Y~C~a~N 80 (95)
T cd05722 3 LSEPSD-IVAVRGGPVVLNCS-AEGEPPPKIEWKKDGVLLNLVSDERRQQLPNGSLLITSVVHSKHNKPDEGFYQCVAQN 80 (95)
T ss_pred EECCCC-eEEcCCCCEEEeee-cccCCCCEEEEEECCeECccccCcceEEccCCeEEEeeeeccCCCCCcCEEEEEEEEC
Confidence 446666 78889999999995 556789999999999877533 3455777766 58899999999999
Q ss_pred C-CCCe-EEEEEEEE
Q psy14542 81 D-DDSA-QMSAQVIL 93 (371)
Q Consensus 81 ~-~~~~-~~~~~l~v 93 (371)
. .|.. +..+.|.|
T Consensus 81 ~~~G~~~s~~~~l~v 95 (95)
T cd05722 81 DSLGSIVSRTARLTV 95 (95)
T ss_pred CccCcEEEeeeEEeC
Confidence 9 7765 45566653
No 154
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.32 E-value=1.1e-11 Score=80.59 Aligned_cols=61 Identities=13% Similarity=0.266 Sum_probs=51.4
Q ss_pred EEEEecCCCCCCeeEEEeCCEEEeeC--------------CeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEEEEE
Q psy14542 31 LHCRVSPKRLSSAKAWLKDGLVLRRN--------------SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVI 92 (371)
Q Consensus 31 l~C~~~~~~~~~~~~W~~~~~~~~~~--------------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~ 92 (371)
|.| ...+.|.|.++|+|||..+... ..+.|.|.+++.+|+|.|+|.|.|..|+...++.+.
T Consensus 3 i~~-~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 77 (79)
T cd05855 3 IPF-TVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH 77 (79)
T ss_pred EEE-EEeEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence 677 4578899999999999888543 235799999999999999999999999888777664
No 155
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=99.31 E-value=2.3e-11 Score=82.04 Aligned_cols=75 Identities=33% Similarity=0.567 Sum_probs=62.6
Q ss_pred eecCCeEEEEEEeecCCCCceEEEeCCcccccCCceEE-----ecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEE
Q psy14542 234 VKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQR-----IGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQY 308 (371)
Q Consensus 234 ~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~-----~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 308 (371)
+..|+.+.|.|.+.+.|.+.+.|++++..+........ ....|.|.++..+|+|.|.|.+.|..|....++.|.|
T Consensus 6 ~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~~l~v 85 (85)
T cd05729 6 VPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSINHTYKVDV 85 (85)
T ss_pred ecCCCcEEEEEEcCCCCCCeEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceEEEEEEEeC
Confidence 67899999999999999999999999987765433321 1236899999999999999999999999888887764
No 156
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.31 E-value=3.3e-11 Score=81.89 Aligned_cols=74 Identities=20% Similarity=0.309 Sum_probs=56.7
Q ss_pred ceEEEeCCCcEEEecc---CcEEEEEEecCCCCCCeeEEEeCCEEEeeC------CeeEEEEccCC-cCCCeEEEEEEEc
Q psy14542 11 LSIEMSPSGQVVVDVG---HRIELHCRVSPKRLSSAKAWLKDGLVLRRN------SDEVLVLDRVQ-REDAGMYQCHVSA 80 (371)
Q Consensus 11 ~~~~~~p~~~~~~~~G---~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~------~~~~l~i~~~~-~~d~G~Y~C~~~~ 80 (371)
|.+...|.. ..+.++ +.+.|.| ...+.|.+.+.|+|++..+... .++.|.|.++. .+|+|.|+|.|.|
T Consensus 2 P~f~~~P~~-~~~~~~~~~~~v~l~C-~a~G~P~P~i~W~k~~~~i~~~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N 79 (93)
T cd05849 2 PVFEEQPID-TIYPEESTEGKVSVNC-RARANPFPIYKWRKNNLDIDLTNDRYSMVGGNLVINNPDKYKDAGRYVCIVSN 79 (93)
T ss_pred CEEEECCCC-EEecCCccCCeEEEeC-cCccCCCCEEEEEECCEEccCCCCeEEEECCEEEECcCCcCCCCEEEEEEEEe
Confidence 445555665 545444 4799999 5578899999999999877532 34689999885 6899999999999
Q ss_pred CCCCeE
Q psy14542 81 DDDSAQ 86 (371)
Q Consensus 81 ~~~~~~ 86 (371)
..|...
T Consensus 80 ~~G~~~ 85 (93)
T cd05849 80 IYGKVR 85 (93)
T ss_pred CcceEE
Confidence 988763
No 157
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=99.30 E-value=2.1e-11 Score=80.13 Aligned_cols=69 Identities=16% Similarity=0.351 Sum_probs=57.0
Q ss_pred EEeCCCcEEEeccCcEEEEEEecCCCCCC-eeEEEeCCEEEee---CCeeEEEEccCCcCCCeEEEEEEEcCCCCeE
Q psy14542 14 EMSPSGQVVVDVGHRIELHCRVSPKRLSS-AKAWLKDGLVLRR---NSDEVLVLDRVQREDAGMYQCHVSADDDSAQ 86 (371)
Q Consensus 14 ~~~p~~~~~~~~G~~v~l~C~~~~~~~~~-~~~W~~~~~~~~~---~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~ 86 (371)
...|+. +.+.+|+++.|.|. +.+.|.+ .|.|+|+|..+.. ...+.|.|..+ .|+|.|.|.|.|..|...
T Consensus 2 ~~~P~~-~~v~~G~~v~l~C~-a~G~P~P~~I~W~k~g~~l~~~~~~~~s~L~i~~~--~d~g~Y~C~A~N~~G~~~ 74 (81)
T cd05749 2 TVEPED-LSVTANTPFNLTCQ-AVGPPEPVEILWWQGGSPLGDPPAPSPSVLNVPGL--NETSKFSCEAHNAKGVTT 74 (81)
T ss_pred cCCCCc-eEEcCCCCEEEEEE-eeeecCCeEEEEEECCEECCCCCCCCCCEEEEccc--cCCeEEEEEEEeccCcEE
Confidence 345676 89999999999995 6788888 7999999998754 25568999887 488999999999988654
No 158
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=99.30 E-value=1e-11 Score=80.49 Aligned_cols=64 Identities=28% Similarity=0.485 Sum_probs=53.9
Q ss_pred EEEEEEecCCCCCCeeEEEeCCEEEeeC------CeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEEEEEE
Q psy14542 29 IELHCRVSPKRLSSAKAWLKDGLVLRRN------SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVIL 93 (371)
Q Consensus 29 v~l~C~~~~~~~~~~~~W~~~~~~~~~~------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 93 (371)
+.|.| ...+.|.+.+.|+|++..+... ....|.|.+++.+|+|.|+|.+.|..|.....+.|.|
T Consensus 1 v~l~C-~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V 70 (71)
T cd05731 1 LLLEC-IAEGLPTPEISWIKIGGELPADRTKFENFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV 70 (71)
T ss_pred CEEEE-EeeEecCCeEEEEECCeECCCCceeEecCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence 47999 4567889999999988765432 4468999999999999999999999998888888776
No 159
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.29 E-value=1.4e-11 Score=81.07 Aligned_cols=66 Identities=17% Similarity=0.262 Sum_probs=53.8
Q ss_pred cCcEEEEEEecCCCCCCeeEEEeCCEEEeeC---------CeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEEEEE
Q psy14542 26 GHRIELHCRVSPKRLSSAKAWLKDGLVLRRN---------SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVI 92 (371)
Q Consensus 26 G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~---------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~ 92 (371)
|+++.|.|. ..+.|.+.+.|++++..+... ....|.|.+++.+|+|.|+|.+.|..|.......+.
T Consensus 1 G~~v~l~C~-~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~~ 75 (78)
T cd05743 1 GETVEFTCV-ATGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGIPDGI 75 (78)
T ss_pred CCEEEEEEE-EEEecCCEEEEEECCeECCCCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEEEecccEE
Confidence 789999995 567889999999987765432 346899999999999999999999988776554443
No 160
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.29 E-value=1.6e-11 Score=80.35 Aligned_cols=64 Identities=27% Similarity=0.477 Sum_probs=52.5
Q ss_pred EEEEEEecCCCCCCeeEEEeCCEEE-eeC---------CeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEEEEEE
Q psy14542 29 IELHCRVSPKRLSSAKAWLKDGLVL-RRN---------SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVIL 93 (371)
Q Consensus 29 v~l~C~~~~~~~~~~~~W~~~~~~~-~~~---------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 93 (371)
+.|.| ...+.|.+.+.|+|++... ... ....|.|.+++.+|+|.|+|.+.|..|.....+.|.|
T Consensus 1 a~l~C-~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V 74 (75)
T cd05763 1 ARLEC-AATGHPTPQIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQNTAGSISANATLTV 74 (75)
T ss_pred CEeEe-ecccccCCEEEEEeCCCccCCcccccceEEecCCCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEE
Confidence 47899 5678899999999987532 110 3468999999999999999999999998888888876
No 161
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=99.29 E-value=1.2e-11 Score=81.06 Aligned_cols=66 Identities=24% Similarity=0.534 Sum_probs=52.1
Q ss_pred EEEEEEeec-CCCCceEEEeCCcccccCC----ceEE----ecceEEEeccCCCCCeEEEEEEEcCCCCceeEEE
Q psy14542 240 VILPCSAQG-NPLPTIKWYKQDSPVEESD----RIQR----IGSSLSISHVEESDSGVWNCVANNSEGQDKMQLF 305 (371)
Q Consensus 240 ~~l~C~~~~-~p~~~v~W~~~~~~~~~~~----~~~~----~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 305 (371)
+.|.|.+.+ .|.+.+.|++++..+.... ++.. ..+.|.|.++..+|+|.|+|.|.|..|....++.
T Consensus 1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~~ 75 (76)
T cd05895 1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDSVTAN 75 (76)
T ss_pred CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEEe
Confidence 368999874 6778999999998875432 1221 2357999999999999999999999998877654
No 162
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=99.28 E-value=4.2e-11 Score=81.19 Aligned_cols=76 Identities=25% Similarity=0.459 Sum_probs=61.7
Q ss_pred eecCCeEEEEEEeecCCCCceEEEeCCcccccC----CceEEecceEEEeccCCCCCeEEEEEEEcCC-CCceeEEEEEE
Q psy14542 234 VKKDESVILPCSAQGNPLPTIKWYKQDSPVEES----DRIQRIGSSLSISHVEESDSGVWNCVANNSE-GQDKMQLFIQY 308 (371)
Q Consensus 234 ~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~----~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~-g~~~~~~~l~v 308 (371)
+..|+.+.|.|.+.+ |.+.+.|++++..+... .++....+.|.|.++..+|+|.|.|.|.+.. +....++.|.|
T Consensus 8 v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~~~~l~V 86 (89)
T cd04979 8 VVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLLVTEDGLLIRSVSPADAGVYTCQSVEHGFKQTLATYSLNV 86 (89)
T ss_pred EECCCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEEEcCCCEEEccCCHHHCEEEEEEEecCccceeEeEEEEEE
Confidence 888999999999876 77899999999876654 3455555679999999999999999998754 45677777777
Q ss_pred ec
Q psy14542 309 AH 310 (371)
Q Consensus 309 ~~ 310 (371)
.+
T Consensus 87 ~~ 88 (89)
T cd04979 87 LE 88 (89)
T ss_pred ec
Confidence 53
No 163
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=99.28 E-value=2.7e-11 Score=81.38 Aligned_cols=71 Identities=23% Similarity=0.417 Sum_probs=59.9
Q ss_pred eecCCeEEEEEEeec-CCCCceEEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEE
Q psy14542 234 VKKDESVILPCSAQG-NPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFI 306 (371)
Q Consensus 234 ~~~g~~~~l~C~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 306 (371)
+..|+.++|.|.+.+ .|.+.+.|++++..+... ....++.|.|.++..+|+|.|.|.|.|..|.....+.|
T Consensus 13 v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~--~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~~~l 84 (85)
T cd05754 13 VRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSR--AMDFNGILTIRNVQLSDAGTYVCTGSNMLDTDEATATL 84 (85)
T ss_pred EcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCc--ccccCCEEEECCCCHHHCEEEEEEEeccCCeEeEEEEE
Confidence 889999999999875 678899999998765432 22346789999999999999999999999998887765
No 164
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.27 E-value=3.3e-11 Score=79.39 Aligned_cols=61 Identities=16% Similarity=0.230 Sum_probs=51.5
Q ss_pred EEEEecCCCCCCeeEEEeCCEEEeeC----------------CeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEEEEE
Q psy14542 31 LHCRVSPKRLSSAKAWLKDGLVLRRN----------------SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVI 92 (371)
Q Consensus 31 l~C~~~~~~~~~~~~W~~~~~~~~~~----------------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~ 92 (371)
|.| ...+.|.+.++|+|||..+... ..+.|.|.+++.+|+|.|+|.|.|..|....++.|.
T Consensus 3 i~~-~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~ 79 (81)
T cd04971 3 IPF-TVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAH 79 (81)
T ss_pred EEE-EeEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEee
Confidence 578 4568899999999999887643 134699999999999999999999999988877765
No 165
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=99.26 E-value=3.9e-11 Score=80.98 Aligned_cols=73 Identities=19% Similarity=0.344 Sum_probs=58.0
Q ss_pred EEEeccCcEEEEEEecCC----CCCCeeEEEeCCEEEeeC-----CeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEEEE
Q psy14542 21 VVVDVGHRIELHCRVSPK----RLSSAKAWLKDGLVLRRN-----SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQV 91 (371)
Q Consensus 21 ~~~~~G~~v~l~C~~~~~----~~~~~~~W~~~~~~~~~~-----~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l 91 (371)
..+.+|++..|.|..... +|.+.+.|+|++..+... ....|.|.+++.+|+|.|+|.+.+..+.....+..
T Consensus 5 ~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~~~~~~~L~I~~v~~~DsG~YtC~~~n~~~~~~~~~t~ 84 (92)
T cd05757 5 QILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKRFVKGSKLLIQNVTEEDAGNYTCKLTFTHNGKQYNVTR 84 (92)
T ss_pred EEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccEEecCCEEEEeeCChhhCEEEEEEEEecCCCEEEEEEE
Confidence 578899999999954432 257789999999887654 45789999999999999999999887776555444
Q ss_pred EE
Q psy14542 92 IL 93 (371)
Q Consensus 92 ~v 93 (371)
.+
T Consensus 85 t~ 86 (92)
T cd05757 85 TI 86 (92)
T ss_pred EE
Confidence 43
No 166
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.26 E-value=2.8e-11 Score=82.03 Aligned_cols=68 Identities=29% Similarity=0.433 Sum_probs=54.4
Q ss_pred cCcEEEEEEecCCCCCCeeEEEeCC----EEEe-----------e-------CCeeEEEEccCCcCCCeEEEEEEEcCCC
Q psy14542 26 GHRIELHCRVSPKRLSSAKAWLKDG----LVLR-----------R-------NSDEVLVLDRVQREDAGMYQCHVSADDD 83 (371)
Q Consensus 26 G~~v~l~C~~~~~~~~~~~~W~~~~----~~~~-----------~-------~~~~~l~i~~~~~~d~G~Y~C~~~~~~~ 83 (371)
|+.++|.|. ..+.|.|.|+|+|++ ..+. . .....|.|.+++.+|+|.|+|.|.|..|
T Consensus 1 G~~v~l~C~-v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G 79 (90)
T cd04974 1 GSDVEFHCK-VYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIG 79 (90)
T ss_pred CCcEEEEEE-EeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccC
Confidence 788999995 567889999999963 2111 0 0235799999999999999999999999
Q ss_pred CeEEEEEEEEe
Q psy14542 84 SAQMSAQVILG 94 (371)
Q Consensus 84 ~~~~~~~l~v~ 94 (371)
....++.|.|.
T Consensus 80 ~~~~sa~L~V~ 90 (90)
T cd04974 80 PSHHSAWLTVL 90 (90)
T ss_pred cccCCEEEEeC
Confidence 99888888873
No 167
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=99.25 E-value=5.1e-11 Score=78.93 Aligned_cols=64 Identities=27% Similarity=0.438 Sum_probs=53.0
Q ss_pred eCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC------CeeEEEEccCCcCCCeEEEEEEEcCC
Q psy14542 16 SPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN------SDEVLVLDRVQREDAGMYQCHVSADD 82 (371)
Q Consensus 16 ~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~------~~~~l~i~~~~~~d~G~Y~C~~~~~~ 82 (371)
.|.. ..+.+|+++.|.|.. . .+.+.+.|++||..+... ....|.|.+++.+|+|.|+|.+....
T Consensus 2 ~P~~-~~v~~G~~v~L~C~~-~-~~~~~i~W~~ng~~i~~~~~r~~~~~~~L~I~nv~~~DsG~Y~C~a~e~~ 71 (87)
T cd05873 2 DPRQ-RTFKLGNNAELKCSP-K-SNLARVVWKFDGKVLTPESAKYLLYRDGLLIFNASEADAGRYQCLSVEKS 71 (87)
T ss_pred Ccce-EEEECCCCEEEEEEC-C-CCCCeEEEEECCEECCCCCceEEEECCcEEEeCCCHHHCEEEEEEEEecc
Confidence 4566 889999999999964 3 356789999999887643 34679999999999999999998753
No 168
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.25 E-value=3.8e-11 Score=78.13 Aligned_cols=64 Identities=17% Similarity=0.407 Sum_probs=52.4
Q ss_pred EEEEEEecCCCCCCeeEEEeCCEEEeeC--------CeeEEEEccCCcCCCeEEEEEEEcCCCCe-EEEEEEEE
Q psy14542 29 IELHCRVSPKRLSSAKAWLKDGLVLRRN--------SDEVLVLDRVQREDAGMYQCHVSADDDSA-QMSAQVIL 93 (371)
Q Consensus 29 v~l~C~~~~~~~~~~~~W~~~~~~~~~~--------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~v 93 (371)
++|.|. ..+.|.+.+.|+|++..+... ..+.|.|.+++.+|+|.|+|.+.|..|.. +..+.|.|
T Consensus 1 a~l~C~-~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v 73 (74)
T cd05738 1 ATMLCA-ASGNPDPEITWFKDFLPVDTTSNGRIKQLRSGALQIENSEESDQGKYECVATNSAGTRYSAPANLYV 73 (74)
T ss_pred CEEEEE-EeEecCCEEEEEECCEECccCCCCCEEEcCCcEEEECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence 479994 568899999999998876521 45689999999999999999999998875 56666665
No 169
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.24 E-value=6e-11 Score=80.56 Aligned_cols=83 Identities=24% Similarity=0.442 Sum_probs=60.4
Q ss_pred CCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCcccee
Q psy14542 111 GHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSY 190 (371)
Q Consensus 111 g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y 190 (371)
|+.+.|.|.+.+.|. +.+.|++++..+..... . .... ..++.+..++.|.|.+++.+| +|.|
T Consensus 1 G~~v~L~C~~~g~P~-p~v~W~k~g~~~~~~~~------~-~~~~---------~~r~~v~~~~~L~I~~v~~~D-~G~Y 62 (90)
T cd05726 1 GRTVTFQCEATGNPQ-PAIFWQKEGSQNLLFSY------Q-PPQS---------SSRFSVSQTGDLTITNVQRSD-VGYY 62 (90)
T ss_pred CCEEEEEEECCccCC-CEEEEEeCCCcceeecc------c-CCCC---------CCeEEECCCCeEEEeeCChhh-CEEE
Confidence 688999999999887 89999998764321100 0 0000 124444445689999999999 9999
Q ss_pred EEEeeccccceeeeeeccceeeeec
Q psy14542 191 QCRGVNKLTGASLLSVNRGRLSLTE 215 (371)
Q Consensus 191 ~C~~~~~~~~~~~~~~~~~~l~v~~ 215 (371)
+|.+.|. .|.....+ .|.|..
T Consensus 63 ~C~a~N~-~G~~~~~~---~l~V~~ 83 (90)
T cd05726 63 ICQTLNV-AGSILTKA---YLEVTD 83 (90)
T ss_pred EEEEEcC-CCceEEEE---EEEEee
Confidence 9999999 88777777 788774
No 170
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=99.24 E-value=4.8e-11 Score=78.25 Aligned_cols=62 Identities=23% Similarity=0.432 Sum_probs=50.6
Q ss_pred EEEEEEecCCCCCCeeEEEeCCEEEeeC-------------CeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEEE
Q psy14542 29 IELHCRVSPKRLSSAKAWLKDGLVLRRN-------------SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQ 90 (371)
Q Consensus 29 v~l~C~~~~~~~~~~~~W~~~~~~~~~~-------------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~ 90 (371)
+.|.|.+..+.|.+.+.|+++++.+... ...+|.|.+++.+|+|.|+|.+.|..|....++.
T Consensus 1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~~ 75 (76)
T cd05895 1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDSVTAN 75 (76)
T ss_pred CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEEe
Confidence 4799976656788899999998877532 2367999999999999999999999887766554
No 171
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.23 E-value=2.7e-11 Score=81.42 Aligned_cols=68 Identities=24% Similarity=0.433 Sum_probs=56.3
Q ss_pred eCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEe--eC-------CeeEEEEccCCcCCCeEEEEEEEcCCC
Q psy14542 16 SPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLR--RN-------SDEVLVLDRVQREDAGMYQCHVSADDD 83 (371)
Q Consensus 16 ~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~--~~-------~~~~l~i~~~~~~d~G~Y~C~~~~~~~ 83 (371)
.+..+..+.+|+.+.|.|....+.|.+.|.|++++..+. .. .++.|.|.+++.+|+|.|+|.|.+...
T Consensus 8 ~~~~~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~~~~G~L~fs~v~~~D~g~Y~C~A~n~~~ 84 (96)
T cd05727 8 EERDEVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVSQTNGNLYIAKVEASDRGNYSCFVSSPSS 84 (96)
T ss_pred CCcCceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEeCCCCcEEEeecCHhhCceeEEEEEeccc
Confidence 344457899999999999888889999999999976431 11 478999999999999999999998653
No 172
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=99.23 E-value=5.2e-11 Score=80.84 Aligned_cols=67 Identities=31% Similarity=0.466 Sum_probs=53.7
Q ss_pred cCcEEEEEEecCCCCCCeeEEEeC----CEEEeeC------------------CeeEEEEccCCcCCCeEEEEEEEcCCC
Q psy14542 26 GHRIELHCRVSPKRLSSAKAWLKD----GLVLRRN------------------SDEVLVLDRVQREDAGMYQCHVSADDD 83 (371)
Q Consensus 26 G~~v~l~C~~~~~~~~~~~~W~~~----~~~~~~~------------------~~~~l~i~~~~~~d~G~Y~C~~~~~~~ 83 (371)
|+.+.|.|.+ .+.|.+.|.|+|+ +..+... ....|.|.+++.+|+|.|+|.|.|..|
T Consensus 1 G~~v~L~C~~-~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G 79 (90)
T cd05858 1 GSTVEFVCKV-YSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIG 79 (90)
T ss_pred CCeEEEEEEE-ecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCC
Confidence 7899999954 5778999999984 3222110 125799999999999999999999999
Q ss_pred CeEEEEEEEE
Q psy14542 84 SAQMSAQVIL 93 (371)
Q Consensus 84 ~~~~~~~l~v 93 (371)
....++.|.|
T Consensus 80 ~~~~~a~L~V 89 (90)
T cd05858 80 ISHHSAWLTV 89 (90)
T ss_pred cccceEEEEE
Confidence 9888888876
No 173
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.23 E-value=1.6e-10 Score=79.85 Aligned_cols=79 Identities=15% Similarity=0.167 Sum_probs=61.2
Q ss_pred cceEEEeCCCcEEEeccCcEEEEEEecCCCCCC-eeEEEeCCEEEeeC---------------CeeEEEEccCCcCC-Ce
Q psy14542 10 SLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSS-AKAWLKDGLVLRRN---------------SDEVLVLDRVQRED-AG 72 (371)
Q Consensus 10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~-~~~W~~~~~~~~~~---------------~~~~l~i~~~~~~d-~G 72 (371)
+|.+. .+.. ..+.+|+.+.|.|.+ .+.|.+ .+.|++++..+... ...+|.|.+++.+| .|
T Consensus 2 pp~i~-~~~~-~~~~~G~~v~L~C~~-~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G 78 (98)
T cd05758 2 PPIIT-SEAT-QYAILGDKGRVECFI-FSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQT 78 (98)
T ss_pred CCeEc-CCCc-EEEeCCCcEEEEEEE-cccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccce
Confidence 44453 3455 778999999999954 566777 69999998876532 11479999999955 89
Q ss_pred EEEEEEEcCCCCeEEEEEE
Q psy14542 73 MYQCHVSADDDSAQMSAQV 91 (371)
Q Consensus 73 ~Y~C~~~~~~~~~~~~~~l 91 (371)
.|.|.|.|..|.....+.|
T Consensus 79 ~Y~C~A~N~~G~~~~~~~L 97 (98)
T cd05758 79 SYNCTAWNSFGSGTAIISL 97 (98)
T ss_pred eEEEEEEcCCCcccEEEEe
Confidence 9999999999988777665
No 174
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=99.23 E-value=6.3e-11 Score=77.63 Aligned_cols=62 Identities=26% Similarity=0.480 Sum_probs=50.6
Q ss_pred EEEEEEecCCCCCCeeEEEeCCEEEeeC------------CeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEEE
Q psy14542 29 IELHCRVSPKRLSSAKAWLKDGLVLRRN------------SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQ 90 (371)
Q Consensus 29 v~l~C~~~~~~~~~~~~W~~~~~~~~~~------------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~ 90 (371)
+.|.|.+..+.|.+.+.|+|++..+... ....|.|.+++.+|+|.|+|.+.|..|....++.
T Consensus 1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~ 74 (75)
T cd05750 1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVTAN 74 (75)
T ss_pred CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEEEe
Confidence 4799966544888999999998877543 2467999999999999999999999988766553
No 175
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=99.23 E-value=1.7e-10 Score=78.30 Aligned_cols=78 Identities=24% Similarity=0.407 Sum_probs=61.6
Q ss_pred eeeeeeeecCCeEEEEEEeecCCCCc-eEEEeCCcccccC--CceEE--------ecceEEEeccCCCC-CeEEEEEEEc
Q psy14542 228 KHRILNVKKDESVILPCSAQGNPLPT-IKWYKQDSPVEES--DRIQR--------IGSSLSISHVEESD-SGVWNCVANN 295 (371)
Q Consensus 228 ~~~~~~~~~g~~~~l~C~~~~~p~~~-v~W~~~~~~~~~~--~~~~~--------~~~~l~i~~~~~~d-~G~Y~C~a~n 295 (371)
..... +..|+.+.|.|.+.+.|+|. |.|..++..+..+ .++.. ..+.|.|.++...| .|.|.|.|.|
T Consensus 8 ~~s~~-~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y~C~a~N 86 (98)
T cd05898 8 EQVQY-AVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHYNCTAWN 86 (98)
T ss_pred CceEE-EeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEEEEEEEe
Confidence 33344 88999999999998888875 7998887766543 45542 23579999998766 7999999999
Q ss_pred CCCCceeEEEE
Q psy14542 296 SEGQDKMQLFI 306 (371)
Q Consensus 296 ~~g~~~~~~~l 306 (371)
..|.+...+.|
T Consensus 87 ~~G~d~~~i~L 97 (98)
T cd05898 87 SFGSGTAIIQL 97 (98)
T ss_pred CCccceEEEEe
Confidence 99999888776
No 176
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.22 E-value=4.3e-11 Score=76.37 Aligned_cols=62 Identities=24% Similarity=0.340 Sum_probs=48.7
Q ss_pred EEEEEEecCCCCCCeeEEEeCCEEEeeC------CeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEEEE
Q psy14542 29 IELHCRVSPKRLSSAKAWLKDGLVLRRN------SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQV 91 (371)
Q Consensus 29 v~l~C~~~~~~~~~~~~W~~~~~~~~~~------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l 91 (371)
+.|.|. ..+.|.+.+.|+|++..+... ...+|.|.+++.+|+|.|+|.+.+..........+
T Consensus 1 ~~l~c~-v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i 68 (72)
T cd07702 1 YRLTPK-VKAFPAPEVIWLKDGLPAAEKCSRYHVDGYSLVIKDVTEEDAGIYTILLGIKQYNLFKNLTI 68 (72)
T ss_pred CeEEee-EEEcCCCeEEEEECCEECCCCCcEEEeCCCEEEECcCCHHHCEEEEEEEEccccceEeeEEE
Confidence 368995 567899999999999886543 44589999999999999999999876554444333
No 177
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=99.22 E-value=1.2e-10 Score=79.16 Aligned_cols=70 Identities=24% Similarity=0.397 Sum_probs=52.5
Q ss_pred EEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEe---------eC---------CeeEEEEccCCcCCCeEEEEEEEcCC
Q psy14542 21 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLR---------RN---------SDEVLVLDRVQREDAGMYQCHVSADD 82 (371)
Q Consensus 21 ~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~---------~~---------~~~~l~i~~~~~~d~G~Y~C~~~~~~ 82 (371)
..+.+|+++.|.|.+ .+.|.+.+.|++++..+. .. ...+|.|.+++.+|+|.|+|.+...
T Consensus 7 ~tv~~G~tv~L~C~v-~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t~- 84 (95)
T cd05882 7 ETVAVGGTVTLKCGV-KEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFTM- 84 (95)
T ss_pred EEEecCCcEEEEEEE-eCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEee-
Confidence 789999999999954 567788999988664321 01 2579999999999999999999862
Q ss_pred CCeEEEEEEE
Q psy14542 83 DSAQMSAQVI 92 (371)
Q Consensus 83 ~~~~~~~~l~ 92 (371)
....+...|+
T Consensus 85 ~~~~~~~~~~ 94 (95)
T cd05882 85 PVRTAKATVT 94 (95)
T ss_pred ccccEEEEEE
Confidence 2334444444
No 178
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=99.22 E-value=6.2e-11 Score=78.72 Aligned_cols=70 Identities=24% Similarity=0.378 Sum_probs=55.6
Q ss_pred eecCCeEEEEEEeec-CCCCceEEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCCCc-eeEEEEE
Q psy14542 234 VKKDESVILPCSAQG-NPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQD-KMQLFIQ 307 (371)
Q Consensus 234 ~~~g~~~~l~C~~~~-~p~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~ 307 (371)
+.+|+.++|.|.+.+ .+.+.+.|++++..+... ..+..|.|.+++.+|+|.|+|.+.+..|.. +..+.|.
T Consensus 11 V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~~----~~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~~s~~~~i~ 82 (83)
T cd05753 11 VFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKYS----HSNSNLSIPQATLSDSGSYHCSGIIGSYDYSSEPVSIT 82 (83)
T ss_pred ecCCCCEEEEeeCCCCCcceEEEEEECCeEcccc----CCCceEEECccCHHHCEEEEEEEEeCCceecCCCEEEE
Confidence 899999999999854 566789999999866432 135679999999999999999999998863 4444443
No 179
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.21 E-value=9.5e-11 Score=78.09 Aligned_cols=67 Identities=24% Similarity=0.402 Sum_probs=53.8
Q ss_pred cCcEEEEEEecCCCCCCeeEEEeCCE---E--EeeC---------CeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEEEE
Q psy14542 26 GHRIELHCRVSPKRLSSAKAWLKDGL---V--LRRN---------SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQV 91 (371)
Q Consensus 26 G~~v~l~C~~~~~~~~~~~~W~~~~~---~--~~~~---------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l 91 (371)
|+.+.|.| ...+.|.+.+.|+|++. . +... ...+|.|.+++.+|+|.|+|.+.|..|.....+.|
T Consensus 1 G~~v~l~C-~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l 79 (81)
T cd05765 1 GETASFHC-DVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAGLYTCTARNSGGLLRANFPL 79 (81)
T ss_pred CCcEEEEe-eccccCCCcEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCcccCEEEEEEEecCCceEEEEEEE
Confidence 78999999 45678899999999631 1 1110 33689999999999999999999999988888877
Q ss_pred EE
Q psy14542 92 IL 93 (371)
Q Consensus 92 ~v 93 (371)
.|
T Consensus 80 ~v 81 (81)
T cd05765 80 SV 81 (81)
T ss_pred eC
Confidence 65
No 180
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=99.21 E-value=9.2e-11 Score=76.93 Aligned_cols=65 Identities=20% Similarity=0.425 Sum_probs=54.9
Q ss_pred EEEEEEecCCCCCCeeEEEeCCEEEeeC---------CeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEEEEEEe
Q psy14542 29 IELHCRVSPKRLSSAKAWLKDGLVLRRN---------SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVILG 94 (371)
Q Consensus 29 v~l~C~~~~~~~~~~~~W~~~~~~~~~~---------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~ 94 (371)
+.|.|. ..+.|.+.+.|+|++..+... ....|.|.+++.+|.|.|+|.+.|..|.....+.|.|.
T Consensus 1 ~~L~C~-v~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~ 74 (76)
T cd05736 1 ASLRCH-AEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVE 74 (76)
T ss_pred CEeEeE-eeecCCCEEEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEE
Confidence 468995 557788999999998876533 33579999999999999999999999999988888875
No 181
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=99.20 E-value=7.5e-11 Score=78.99 Aligned_cols=68 Identities=22% Similarity=0.367 Sum_probs=54.3
Q ss_pred cCcEEEEEEecCCC--CCCeeEEEeCCEEEeeC--------------CeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEE
Q psy14542 26 GHRIELHCRVSPKR--LSSAKAWLKDGLVLRRN--------------SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSA 89 (371)
Q Consensus 26 G~~v~l~C~~~~~~--~~~~~~W~~~~~~~~~~--------------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~ 89 (371)
|+++.|.|.+. +. |.+.+.|++++..+... ..+.|.|.+++.+|+|.|+|.+.|..+....+.
T Consensus 1 Ge~~~L~C~~~-g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~ 79 (84)
T cd05742 1 GETLVLNCTVL-TELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKEST 79 (84)
T ss_pred CCeEEEEEEEE-eCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEEE
Confidence 78999999654 44 78899999866433111 346899999999999999999999998888888
Q ss_pred EEEEe
Q psy14542 90 QVILG 94 (371)
Q Consensus 90 ~l~v~ 94 (371)
.|.|+
T Consensus 80 ~v~v~ 84 (84)
T cd05742 80 KVNIH 84 (84)
T ss_pred EEEEC
Confidence 77763
No 182
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=99.20 E-value=1.6e-10 Score=77.05 Aligned_cols=68 Identities=19% Similarity=0.354 Sum_probs=52.9
Q ss_pred cCcEEEEEEecCCCCCCeeEEEeCCEE----Eee------C---CeeEEEEccCCcCCCeEEEEEEEcCCC--CeEEEEE
Q psy14542 26 GHRIELHCRVSPKRLSSAKAWLKDGLV----LRR------N---SDEVLVLDRVQREDAGMYQCHVSADDD--SAQMSAQ 90 (371)
Q Consensus 26 G~~v~l~C~~~~~~~~~~~~W~~~~~~----~~~------~---~~~~l~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~~ 90 (371)
|++++|.|.+ .+.|.+.+.|++.++. +.. . ...+|.|.+++.+|+|.|.|.+.+..+ ...+++.
T Consensus 1 Ge~~~l~C~~-~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~ 79 (84)
T cd05861 1 GETITVNCIV-QGNEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVN 79 (84)
T ss_pred CCcEEEEEEE-ECCCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEE
Confidence 7899999965 4567889999986642 111 0 256899999999999999999998765 5577788
Q ss_pred EEEe
Q psy14542 91 VILG 94 (371)
Q Consensus 91 l~v~ 94 (371)
|+|.
T Consensus 80 i~V~ 83 (84)
T cd05861 80 ITVH 83 (84)
T ss_pred EEEe
Confidence 8775
No 183
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=99.19 E-value=1.2e-10 Score=73.31 Aligned_cols=63 Identities=46% Similarity=0.883 Sum_probs=52.3
Q ss_pred cCCeEEEEEEeecCCCCceEEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCC
Q psy14542 236 KDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEG 298 (371)
Q Consensus 236 ~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g 298 (371)
+|+.+.|.|.+.+.+.+.+.|++++..+............|.|.++..+|+|.|+|.+.|..|
T Consensus 1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g 63 (63)
T smart00408 1 EGQSVTLTCPAEGDPVPNITWLKDGKPLPESNRLSASGSTLTIKSVSLEDSGEYTCVAENSAG 63 (63)
T ss_pred CCceEEEEeeCccCCCCeEEEEECCEECCCCCEEecCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence 478899999988888899999999887773333334556899999999999999999998765
No 184
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=99.19 E-value=2.6e-10 Score=77.87 Aligned_cols=74 Identities=23% Similarity=0.372 Sum_probs=55.9
Q ss_pred eecCCeEEEEEEeecCCCCceEEEeC--------CcccccCCceEE-----ecceEEEeccCCCCCeEEEEEEEcCCCCc
Q psy14542 234 VKKDESVILPCSAQGNPLPTIKWYKQ--------DSPVEESDRIQR-----IGSSLSISHVEESDSGVWNCVANNSEGQD 300 (371)
Q Consensus 234 ~~~g~~~~l~C~~~~~p~~~v~W~~~--------~~~~~~~~~~~~-----~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~ 300 (371)
+.+|+++.|.|.+.+.|.+.+.|++. +.......|+.. ...+|.|.++..+|+|.|+|.+.+..+ .
T Consensus 9 v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~t~~~-~ 87 (95)
T cd07701 9 VVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSLFTMPV-K 87 (95)
T ss_pred EecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeEeecC-c
Confidence 89999999999999999999999853 222223445442 235799999999999999999998533 3
Q ss_pred eeEEEEEE
Q psy14542 301 KMQLFIQY 308 (371)
Q Consensus 301 ~~~~~l~v 308 (371)
+.+..|.|
T Consensus 88 ~~~~~l~v 95 (95)
T cd07701 88 TSKAYLTV 95 (95)
T ss_pred cEEEEEEC
Confidence 66666654
No 185
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=99.18 E-value=1.6e-10 Score=78.34 Aligned_cols=72 Identities=24% Similarity=0.411 Sum_probs=56.7
Q ss_pred EEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC---------CeeEEEEccCCcCCCeEEEEEEEcCC-CCeEEEEE
Q psy14542 21 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN---------SDEVLVLDRVQREDAGMYQCHVSADD-DSAQMSAQ 90 (371)
Q Consensus 21 ~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~---------~~~~l~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~~ 90 (371)
+.+.+|+++.|.|.. .+ |.+.+.|++++..+... ....|.|.+++.+|+|.|.|.+.+.. +....++.
T Consensus 6 ~~v~~g~~v~L~C~~-~~-p~~~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~~~~ 83 (89)
T cd04979 6 VTVVEGNSVFLECSP-KS-NLASVVWLFQGGPLQRKEEPEERLLVTEDGLLIRSVSPADAGVYTCQSVEHGFKQTLATYS 83 (89)
T ss_pred EEEECCCcEEEEEeC-CC-CCceEEEEECCcccccccCcCceEEEcCCCEEEccCCHHHCEEEEEEEecCccceeEeEEE
Confidence 788999999999964 34 67789999987655321 33569999999999999999998654 44567788
Q ss_pred EEEe
Q psy14542 91 VILG 94 (371)
Q Consensus 91 l~v~ 94 (371)
|.|.
T Consensus 84 l~V~ 87 (89)
T cd04979 84 LNVL 87 (89)
T ss_pred EEEe
Confidence 8775
No 186
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=99.18 E-value=3.2e-10 Score=76.60 Aligned_cols=76 Identities=24% Similarity=0.438 Sum_probs=59.7
Q ss_pred eecCCeEEEEEEeecCCCCceEEEeCCc--c----cccCCceEEecceEEEeccCCCCCeEEEEEEE-cCCCCceeEEEE
Q psy14542 234 VKKDESVILPCSAQGNPLPTIKWYKQDS--P----VEESDRIQRIGSSLSISHVEESDSGVWNCVAN-NSEGQDKMQLFI 306 (371)
Q Consensus 234 ~~~g~~~~l~C~~~~~p~~~v~W~~~~~--~----~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~-n~~g~~~~~~~l 306 (371)
+.+|+.+.|.|.. +.|.+.+.|++.+. . +....++...++.|.|.++..+|+|.|+|.|. |..+.....+.|
T Consensus 8 ~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~a~~~~~~~~~~~~~l 86 (91)
T cd05871 8 GVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERLIHTERGLLLRSLQRSDAGVYTCTAVEHSFSQTLAKYTL 86 (91)
T ss_pred EecCCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccEEEecCeEEEeeCChhHCEEEEEEEEccCCeEEEEEEEE
Confidence 7889999999996 47889999998432 2 12335566667789999999999999999998 566767777888
Q ss_pred EEec
Q psy14542 307 QYAH 310 (371)
Q Consensus 307 ~v~~ 310 (371)
.|..
T Consensus 87 ~v~~ 90 (91)
T cd05871 87 HVIE 90 (91)
T ss_pred EEec
Confidence 7754
No 187
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=99.16 E-value=3.9e-10 Score=76.63 Aligned_cols=62 Identities=26% Similarity=0.431 Sum_probs=50.5
Q ss_pred eecCCeEEEEEEeecCCCCceEEEeCCccc--------ccCCceEE-----ecceEEEeccCCCCCeEEEEEEEc
Q psy14542 234 VKKDESVILPCSAQGNPLPTIKWYKQDSPV--------EESDRIQR-----IGSSLSISHVEESDSGVWNCVANN 295 (371)
Q Consensus 234 ~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~--------~~~~~~~~-----~~~~l~i~~~~~~d~G~Y~C~a~n 295 (371)
+..|+++.|.|.+.+.|.+.+.|+++++.+ ....++.. ....|.|.++..+|+|.|+|.+..
T Consensus 9 v~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t 83 (95)
T cd05882 9 VAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFT 83 (95)
T ss_pred EecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEe
Confidence 899999999999999999999999887632 11233332 135899999999999999999987
No 188
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=99.16 E-value=4.6e-10 Score=75.60 Aligned_cols=72 Identities=26% Similarity=0.477 Sum_probs=58.5
Q ss_pred EEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC----------CeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEEE
Q psy14542 21 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN----------SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQ 90 (371)
Q Consensus 21 ~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~----------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~ 90 (371)
+.+.+|+++.|.|.+ .+.|.+.+.|++++..+... ....|.|.+++.+|+|.|.|.+.+..|....++.
T Consensus 4 ~~~~~G~~~~l~C~~-~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~~ 82 (85)
T cd05729 4 HAVPAGSTVRLKCPA-SGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSINHTYK 82 (85)
T ss_pred eEecCCCcEEEEEEc-CCCCCCeEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceEEEEEE
Confidence 457789999999954 56788899999998776422 3357999999999999999999998888777777
Q ss_pred EEE
Q psy14542 91 VIL 93 (371)
Q Consensus 91 l~v 93 (371)
|.|
T Consensus 83 l~v 85 (85)
T cd05729 83 VDV 85 (85)
T ss_pred EeC
Confidence 653
No 189
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=99.15 E-value=2.5e-10 Score=76.37 Aligned_cols=74 Identities=22% Similarity=0.368 Sum_probs=56.6
Q ss_pred CCeEEEEEEeecCCC--CceEEEeCCcccccC---C--ce-----EEecceEEEeccCCCCCeEEEEEEEcCCCCceeEE
Q psy14542 237 DESVILPCSAQGNPL--PTIKWYKQDSPVEES---D--RI-----QRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQL 304 (371)
Q Consensus 237 g~~~~l~C~~~~~p~--~~v~W~~~~~~~~~~---~--~~-----~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~ 304 (371)
|+++.|.|.+.+.+. ..+.|.+++...... . +. ....++|.|.++..+|+|.|+|.|.|..|......
T Consensus 1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t 80 (86)
T cd05862 1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKNST 80 (86)
T ss_pred CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEecccE
Confidence 678999999987654 578999877643211 1 11 12346899999999999999999999999888888
Q ss_pred EEEEec
Q psy14542 305 FIQYAH 310 (371)
Q Consensus 305 ~l~v~~ 310 (371)
.|.|.+
T Consensus 81 ~~~V~~ 86 (86)
T cd05862 81 IVIVHE 86 (86)
T ss_pred EEEEeC
Confidence 888763
No 190
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=99.15 E-value=4.5e-10 Score=74.68 Aligned_cols=78 Identities=27% Similarity=0.504 Sum_probs=59.3
Q ss_pred ceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeCCeeEEEEccCCcCCCeEEEEEEEcCCC-CeEEEE
Q psy14542 11 LSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHVSADDD-SAQMSA 89 (371)
Q Consensus 11 ~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~-~~~~~~ 89 (371)
|.|...+ ..+.+|++++|.|.+. +.|...+.|++++..+....+. +.+.+++.+|+|.|+|.+.+..+ ..+..+
T Consensus 2 P~l~~~~---~~v~~g~~~~l~C~~~-~~p~~~~~w~~~~~~~~~~~~~-~~~~~~~~~~~g~y~C~~~~~~~~~~s~~~ 76 (80)
T PF13895_consen 2 PVLSSSP---QSVEEGDSVTLTCSVS-GNPPPQVQWYKNGSPINSSQNG-LFIPNVSPEDSGNYTCRASNGSGSNTSTSV 76 (80)
T ss_dssp -EEEEES---SEEETTSEEEEEEEEE-SSSSSEEEEEETTEEEEEESSE-EEESSEEGGGTEEEEEEEEETTEEEEEEEE
T ss_pred cEEEccc---eEEeCCCcEEEEEEEE-cccceeeeeeeeeeeeeeeeee-eeeeeeccccCEEEEEEEEeCCCCeEeeeE
Confidence 5566555 3589999999999655 7777899999999988864333 88899999999999999998554 234555
Q ss_pred EEEE
Q psy14542 90 QVIL 93 (371)
Q Consensus 90 ~l~v 93 (371)
.|.|
T Consensus 77 ~v~V 80 (80)
T PF13895_consen 77 NVTV 80 (80)
T ss_dssp EEEE
T ss_pred EeeC
Confidence 5554
No 191
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=99.14 E-value=9.2e-10 Score=74.69 Aligned_cols=80 Identities=19% Similarity=0.211 Sum_probs=60.7
Q ss_pred cceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC---------------CeeEEEEccCCcCC-CeE
Q psy14542 10 SLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN---------------SDEVLVLDRVQRED-AGM 73 (371)
Q Consensus 10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~---------------~~~~l~i~~~~~~d-~G~ 73 (371)
+|.| ..... ..+.+|+.+.|.|.+....++..|.|.+++..+... ..+.|.|.++...| .|.
T Consensus 2 pP~i-~~~~s-~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~ 79 (98)
T cd05898 2 PPII-SSEQV-QYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTH 79 (98)
T ss_pred CCEE-ecCce-EEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcE
Confidence 4555 33444 789999999999966555445568888876655332 45789999998877 799
Q ss_pred EEEEEEcCCCCeEEEEEE
Q psy14542 74 YQCHVSADDDSAQMSAQV 91 (371)
Q Consensus 74 Y~C~~~~~~~~~~~~~~l 91 (371)
|.|.|.|..|.+...+.|
T Consensus 80 Y~C~a~N~~G~d~~~i~L 97 (98)
T cd05898 80 YNCTAWNSFGSGTAIIQL 97 (98)
T ss_pred EEEEEEeCCccceEEEEe
Confidence 999999999999877766
No 192
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=99.13 E-value=3.8e-10 Score=75.00 Aligned_cols=69 Identities=38% Similarity=0.748 Sum_probs=55.8
Q ss_pred eecCCeEEEEEEeecCCCCceEEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCC-CceeEEEEEE
Q psy14542 234 VKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEG-QDKMQLFIQY 308 (371)
Q Consensus 234 ~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g-~~~~~~~l~v 308 (371)
+..|+.+.|.|.+.+.|.+.+.|++++..+.... ..+.+..+..+|+|.|+|.+.+..+ ..+.++.|.|
T Consensus 11 v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~------~~~~~~~~~~~~~g~y~C~~~~~~~~~~s~~~~v~V 80 (80)
T PF13895_consen 11 VEEGDSVTLTCSVSGNPPPQVQWYKNGSPINSSQ------NGLFIPNVSPEDSGNYTCRASNGSGSNTSTSVNVTV 80 (80)
T ss_dssp EETTSEEEEEEEEESSSSSEEEEEETTEEEEEES------SEEEESSEEGGGTEEEEEEEEETTEEEEEEEEEEEE
T ss_pred EeCCCcEEEEEEEEcccceeeeeeeeeeeeeeee------eeeeeeeeccccCEEEEEEEEeCCCCeEeeeEEeeC
Confidence 8899999999999998889999999887666332 2377888999999999999999654 4556666654
No 193
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=99.12 E-value=4.3e-10 Score=76.32 Aligned_cols=69 Identities=22% Similarity=0.394 Sum_probs=55.9
Q ss_pred ccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEee------CCeeEEEEccCCcCCCeEEEEEEEcC
Q psy14542 9 SSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRR------NSDEVLVLDRVQREDAGMYQCHVSAD 81 (371)
Q Consensus 9 ~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~------~~~~~l~i~~~~~~d~G~Y~C~~~~~ 81 (371)
++|.|.+.|.. .|.+|++|+|.|.. ..+...+.|+|+|..... .....|.|.+++.+|+|.|+|.+.+.
T Consensus 1 pkP~L~a~p~~--vV~~G~~VtL~C~~--~~~~~~f~l~k~g~~~~~~~~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~ 75 (91)
T cd05751 1 PKPSLWAEPSS--VVPLGKPVTLRCQG--PYGAVEYRLYREGSTFAVKKPPEPQNKAKFFIPSMKREHAGRYRCYYRSG 75 (91)
T ss_pred CCCEEEecCCC--ccCCCCcEEEEEec--CCCCCEEEEEECCCCccccccCCCceeEEEEccCCChhHCEEEEEEEECC
Confidence 46888888875 78999999999953 356678999998775332 15678999999999999999999875
No 194
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=99.12 E-value=5.4e-10 Score=76.03 Aligned_cols=74 Identities=23% Similarity=0.408 Sum_probs=55.3
Q ss_pred ceEEEeCCCcEEEec---cCcEEEEEEecCCCCCCeeEEEeCCEEEeeC-------CeeEEEEccCCc-CCCeEEEEEEE
Q psy14542 11 LSIEMSPSGQVVVDV---GHRIELHCRVSPKRLSSAKAWLKDGLVLRRN-------SDEVLVLDRVQR-EDAGMYQCHVS 79 (371)
Q Consensus 11 ~~~~~~p~~~~~~~~---G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~-------~~~~l~i~~~~~-~d~G~Y~C~~~ 79 (371)
|.+.-.|.. ..+.+ |+.+.|.|.+ .+.|.+.++|++++..+... ....|.|.++.. +|+|.|+|.+.
T Consensus 2 P~f~~~p~~-~~~~~~~~~~~~~l~C~~-~g~p~p~i~W~k~~~~l~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~ 79 (91)
T cd04967 2 PVFEEQPDD-TIFPEESDEGKVSLNCRA-RGSPPPTYRWLMNGTEIDDEPDSRYSLVGGNLVISNPSKAKDAGRYQCLAS 79 (91)
T ss_pred CeeEeCCCC-EEccCCCCCCEEEEEEee-eEcCCCEEEEEECCEECCCCCCCCEEEECCEEEEecCCccCCCEEEEEEEE
Confidence 445555665 54444 4579999954 56788999999999887422 346788988874 89999999999
Q ss_pred cCCCCeE
Q psy14542 80 ADDDSAQ 86 (371)
Q Consensus 80 ~~~~~~~ 86 (371)
|..|...
T Consensus 80 N~~G~~~ 86 (91)
T cd04967 80 NIVGTVL 86 (91)
T ss_pred cCCCEEE
Confidence 9888643
No 195
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.10 E-value=4.1e-10 Score=75.73 Aligned_cols=67 Identities=27% Similarity=0.487 Sum_probs=54.5
Q ss_pred eecCCeEEEEEEe-ecCCCCceEEEeCCccc--ccCC-ceEE-ecceEEEeccCCCCCeEEEEEEEcCCCCc
Q psy14542 234 VKKDESVILPCSA-QGNPLPTIKWYKQDSPV--EESD-RIQR-IGSSLSISHVEESDSGVWNCVANNSEGQD 300 (371)
Q Consensus 234 ~~~g~~~~l~C~~-~~~p~~~v~W~~~~~~~--~~~~-~~~~-~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~ 300 (371)
+.+|+.+.|.|.. .|.|.+.+.|++++.++ .... ++.. .++.|.|.++..+|+|+|+|.|.|.....
T Consensus 15 v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~~~~G~L~fs~v~~~D~g~Y~C~A~n~~~~~ 86 (96)
T cd05727 15 VKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVSQTNGNLYIAKVEASDRGNYSCFVSSPSSTK 86 (96)
T ss_pred eeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEeCCCCcEEEeecCHhhCceeEEEEEecccCC
Confidence 8889999999975 57899999999998754 2233 3333 36899999999999999999999987554
No 196
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=99.10 E-value=4.2e-10 Score=73.74 Aligned_cols=57 Identities=23% Similarity=0.459 Sum_probs=46.0
Q ss_pred EEEEEEecCCCCCCeeEEEeCCEEEeeC---------CeeEEEEccCCc----CCCeEEEEEEEcCCCCeE
Q psy14542 29 IELHCRVSPKRLSSAKAWLKDGLVLRRN---------SDEVLVLDRVQR----EDAGMYQCHVSADDDSAQ 86 (371)
Q Consensus 29 v~l~C~~~~~~~~~~~~W~~~~~~~~~~---------~~~~l~i~~~~~----~d~G~Y~C~~~~~~~~~~ 86 (371)
++|.| ...+.|.+.++|+|++..+... ..+.|.|.++.. +|+|.|+|.|.|..|...
T Consensus 1 i~l~C-~~~G~P~P~v~W~k~g~~l~~~~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~ 70 (77)
T cd05733 1 IVIKC-EAKGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAI 70 (77)
T ss_pred CEEEe-eCcccCCCeEEEEECCeECCCCCCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEE
Confidence 47999 4568899999999999876432 457899988754 789999999999988653
No 197
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=99.08 E-value=2e-09 Score=72.36 Aligned_cols=76 Identities=16% Similarity=0.361 Sum_probs=64.6
Q ss_pred eecCCeEEEEEEeecCCCCc-eEEEeCCcccccCCc--eE-------EecceEEEeccCCCCCeEEEEEEEcCCCCceeE
Q psy14542 234 VKKDESVILPCSAQGNPLPT-IKWYKQDSPVEESDR--IQ-------RIGSSLSISHVEESDSGVWNCVANNSEGQDKMQ 303 (371)
Q Consensus 234 ~~~g~~~~l~C~~~~~p~~~-v~W~~~~~~~~~~~~--~~-------~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~ 303 (371)
+..|+.+.|.|.+.++|+|. +.|.+++..+..... +. ...+.|.+..+..+|+|.|+|.|.|..+..+.+
T Consensus 15 v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~~s~t 94 (101)
T cd05860 15 VNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDASASVT 94 (101)
T ss_pred EECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCeEEEE
Confidence 89999999999999999998 999998876543322 11 133679999999999999999999999999999
Q ss_pred EEEEEe
Q psy14542 304 LFIQYA 309 (371)
Q Consensus 304 ~~l~v~ 309 (371)
+.|.|.
T Consensus 95 F~l~v~ 100 (101)
T cd05860 95 FNVYVN 100 (101)
T ss_pred EEEEEe
Confidence 999875
No 198
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=99.08 E-value=9.1e-10 Score=75.18 Aligned_cols=74 Identities=22% Similarity=0.350 Sum_probs=52.7
Q ss_pred CCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCC---------------EE-Eee--CCeeEEEEccCCcCCCeEEEEEE
Q psy14542 17 PSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDG---------------LV-LRR--NSDEVLVLDRVQREDAGMYQCHV 78 (371)
Q Consensus 17 p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~---------------~~-~~~--~~~~~l~i~~~~~~d~G~Y~C~~ 78 (371)
++. +.+.+|++++|.|.+ .+.|.+.+.|++.+ +. ... ....+|.|.+++.+|+|.|.|.+
T Consensus 4 ~~~-v~v~eG~~v~L~C~~-~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~ 81 (95)
T cd07701 4 TQN-VTVVEGGTANLTCRV-DQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSL 81 (95)
T ss_pred cce-EEEecCCcEEEEEEE-ecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEe
Confidence 344 789999999999955 56678889998521 11 100 04478999999999999999999
Q ss_pred EcCCCCeEEEEEEEE
Q psy14542 79 SADDDSAQMSAQVIL 93 (371)
Q Consensus 79 ~~~~~~~~~~~~l~v 93 (371)
.... .......|.|
T Consensus 82 ~t~~-~~~~~~~l~v 95 (95)
T cd07701 82 FTMP-VKTSKAYLTV 95 (95)
T ss_pred Eeec-CccEEEEEEC
Confidence 8743 3355555543
No 199
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=99.07 E-value=1.2e-09 Score=70.69 Aligned_cols=61 Identities=16% Similarity=0.432 Sum_probs=49.0
Q ss_pred EEEEEEee-cCCCCceEEEeCCcccccCC------ceEEecceEEEeccCCCCCeEEEEEEEcCCCCc
Q psy14542 240 VILPCSAQ-GNPLPTIKWYKQDSPVEESD------RIQRIGSSLSISHVEESDSGVWNCVANNSEGQD 300 (371)
Q Consensus 240 ~~l~C~~~-~~p~~~v~W~~~~~~~~~~~------~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~ 300 (371)
+.|+|... ++|++.|+|+++++++.... +.....++|.|.....+|++.|+|+|.|..+..
T Consensus 2 ~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~ 69 (80)
T cd05885 2 VELTCLSPRSKPAATLRWYRDRKELKGVISQQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVS 69 (80)
T ss_pred EEEEEeCCCccCCCeEEEEECCEECCCCcccccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCC
Confidence 68999976 58999999999999886432 111234579999999999999999999998764
No 200
>PHA03376 BARF1; Provisional
Probab=99.07 E-value=1.7e-08 Score=74.43 Aligned_cols=135 Identities=18% Similarity=0.289 Sum_probs=77.4
Q ss_pred eeecCCcEEEEEEecCC--CCCceEEEeeCC----EE-eeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEE
Q psy14542 107 VVDVGHRIELHCRVSPK--RLSSAKAWLKDG----LV-LRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIH 179 (371)
Q Consensus 107 ~~~~g~~v~l~C~~~~~--~~~~~v~W~~~~----~~-~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~ 179 (371)
....|+.+.|.|..... .....|.|+|.+ .. +....... .. .+-+..|.+.....+ .+.+|.|.
T Consensus 22 ta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdV-v~--~QmEyRGrtD~~~~~------gnvsLvI~ 92 (221)
T PHA03376 22 TAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDV-IF--IEWPFRGFFDIHRSA------NTFFLVVT 92 (221)
T ss_pred hheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCee-ee--eeeccccEEEEEecC------CeEEEEEE
Confidence 34789999999987521 223789999943 21 22221111 11 111333333221112 34689999
Q ss_pred EeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEeC
Q psy14542 180 QVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQ 259 (371)
Q Consensus 180 ~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~ 259 (371)
+++.+| .|.|+|.+.....+..+ .. .+.+. .+-.+........ ...-+...+.|.+.|+|.|.++|..+
T Consensus 93 ~l~lSD-dGtY~C~fQkge~~~~k-~e---hLt~V-----~~~~Lsv~a~~~d-Fp~~~~~~i~C~sggfP~P~~~Wle~ 161 (221)
T PHA03376 93 AANISH-DGNYLCRMKLGETEVTK-QE---HLSVV-----KPLTLSVHSERSQ-FPDFSVLTVTCTVNAFPHPHVQWLMP 161 (221)
T ss_pred eeeecC-CceEEEEEEcCCCceee-ee---eeeee-----ecceEEEEecccc-CCCCCeeEEEEecCCcCCchheeccc
Confidence 999999 99999999876333322 22 33333 1111221111111 22245578999988899999999976
Q ss_pred Cc
Q psy14542 260 DS 261 (371)
Q Consensus 260 ~~ 261 (371)
.+
T Consensus 162 ~~ 163 (221)
T PHA03376 162 EG 163 (221)
T ss_pred cC
Confidence 55
No 201
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.07 E-value=5.9e-10 Score=73.64 Aligned_cols=64 Identities=23% Similarity=0.359 Sum_probs=48.8
Q ss_pred EEEEEEecCCCCCCeeEEEeCCEEE-e--------e-----CCeeEEEEccCCcCCCeEEEEEEEcCCCCe-EEEEEEEE
Q psy14542 29 IELHCRVSPKRLSSAKAWLKDGLVL-R--------R-----NSDEVLVLDRVQREDAGMYQCHVSADDDSA-QMSAQVIL 93 (371)
Q Consensus 29 v~l~C~~~~~~~~~~~~W~~~~~~~-~--------~-----~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~v 93 (371)
++|.| ...+.|.+.+.|++++... . . ...++|.|.+++.+|+|.|.|.|.|..|.. +..+.|.|
T Consensus 1 v~l~C-~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l~~ 79 (79)
T cd05734 1 VTLNC-SAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVLEEDSGYYLCKVSNDVGADASKSMVLTV 79 (79)
T ss_pred CEeEe-eCeEeCCCEEEEEECCCccccccccccccCCCEEEecCCeEEECcCCcccCEEEEEEEEeCCCCCCceEEEEeC
Confidence 57999 4568899999999963211 0 0 145789999999999999999999998876 55565543
No 202
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.07 E-value=7e-10 Score=74.42 Aligned_cols=67 Identities=27% Similarity=0.472 Sum_probs=55.6
Q ss_pred eecCCeEEEEEE-eecCCCCceEEEeCCcc-cccCCceEE-ecceEEEeccCCCCCe-EEEEEEEcCCCCc
Q psy14542 234 VKKDESVILPCS-AQGNPLPTIKWYKQDSP-VEESDRIQR-IGSSLSISHVEESDSG-VWNCVANNSEGQD 300 (371)
Q Consensus 234 ~~~g~~~~l~C~-~~~~p~~~v~W~~~~~~-~~~~~~~~~-~~~~l~i~~~~~~d~G-~Y~C~a~n~~g~~ 300 (371)
+.+|+.+.|.|. ..|.|.|.|.|+.++.. +....|+.. .++.|.|.++..+|+| .|.|.|.|.....
T Consensus 15 V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~~~Ri~~~~~GnL~fs~v~~~D~g~~Y~C~a~~~~~~~ 85 (95)
T cd05845 15 VEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQDERVSMGQNGNLYFANVEEQDSHPDYICHAHFPGLRT 85 (95)
T ss_pred EecCCCEEEEecCCCCCCCCEEEEECCCCccccccccEEECCCceEEEEEEehhhCCCCeEEEEEcccccc
Confidence 899999999997 68999999999987654 444555554 5689999999999999 8999999876443
No 203
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.06 E-value=1.2e-09 Score=71.44 Aligned_cols=58 Identities=21% Similarity=0.476 Sum_probs=45.5
Q ss_pred EEEEEEecCCCCCCeeEEEeCCEEEeeC---------CeeEEEEccCCcC----CCeEEEEEEEcCCCCeEE
Q psy14542 29 IELHCRVSPKRLSSAKAWLKDGLVLRRN---------SDEVLVLDRVQRE----DAGMYQCHVSADDDSAQM 87 (371)
Q Consensus 29 v~l~C~~~~~~~~~~~~W~~~~~~~~~~---------~~~~l~i~~~~~~----d~G~Y~C~~~~~~~~~~~ 87 (371)
+.|.| ...+.|.++++|+|++..+... ..++|.|..+..+ |+|.|+|.|.|..|....
T Consensus 1 ~~l~C-~a~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s 71 (77)
T cd05874 1 IVIQC-EAKGKPPPSFSWTRNGTHFDIDKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVS 71 (77)
T ss_pred CEEEe-eCcccCCCeEEEEECCeECCCcCCCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEe
Confidence 47999 4577899999999998876321 4578888877653 789999999998887543
No 204
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=99.06 E-value=1.4e-09 Score=71.11 Aligned_cols=57 Identities=21% Similarity=0.391 Sum_probs=44.7
Q ss_pred EEEEEEecCCCCCCeeEEEeCCEEEeeC---------CeeEEEEccCC----cCCCeEEEEEEEcCCCCeE
Q psy14542 29 IELHCRVSPKRLSSAKAWLKDGLVLRRN---------SDEVLVLDRVQ----REDAGMYQCHVSADDDSAQ 86 (371)
Q Consensus 29 v~l~C~~~~~~~~~~~~W~~~~~~~~~~---------~~~~l~i~~~~----~~d~G~Y~C~~~~~~~~~~ 86 (371)
+.|.| ...+.|.+.++|+|++..+... ..++|.|..+. .+|+|.|+|.|.|..|...
T Consensus 1 ~~l~C-~~~G~P~P~v~W~k~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~ 70 (77)
T cd05875 1 IIIEC-EAKGNPVPTFQWTRNGKFFNVAKDPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTAL 70 (77)
T ss_pred CEEEE-eccccCCCEEEEEECCEEccCcCCCcEEEeCCCceEEEeccCCCCCCCCCEEEEEEEEeccceEE
Confidence 47999 5568899999999999865321 46789998764 2469999999999988653
No 205
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.06 E-value=4.9e-10 Score=75.18 Aligned_cols=67 Identities=19% Similarity=0.357 Sum_probs=54.3
Q ss_pred eCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC-------CeeEEEEccCCcCCCe-EEEEEEEcCC
Q psy14542 16 SPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN-------SDEVLVLDRVQREDAG-MYQCHVSADD 82 (371)
Q Consensus 16 ~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~-------~~~~l~i~~~~~~d~G-~Y~C~~~~~~ 82 (371)
....++.+.+|+.+.|.|....+.|.+.|.|++++...... .++.|.|.+++.+|+| .|.|.|.+..
T Consensus 8 ~~~~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~~~Ri~~~~~GnL~fs~v~~~D~g~~Y~C~a~~~~ 82 (95)
T cd05845 8 EKIRPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQDERVSMGQNGNLYFANVEEQDSHPDYICHAHFPG 82 (95)
T ss_pred cccceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccccccccEEECCCceEEEEEEehhhCCCCeEEEEEccc
Confidence 33334889999999999976788999999999865332111 5689999999999999 8999999764
No 206
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=99.05 E-value=9e-10 Score=74.24 Aligned_cols=73 Identities=14% Similarity=0.315 Sum_probs=54.9
Q ss_pred EEEeccCcEEEEEEecC----------CCCCCeeEEEeCCEEEeeC------------CeeEEEEccCCcCCCeEEEEEE
Q psy14542 21 VVVDVGHRIELHCRVSP----------KRLSSAKAWLKDGLVLRRN------------SDEVLVLDRVQREDAGMYQCHV 78 (371)
Q Consensus 21 ~~~~~G~~v~l~C~~~~----------~~~~~~~~W~~~~~~~~~~------------~~~~l~i~~~~~~d~G~Y~C~~ 78 (371)
..+.+|+++.|.|.... ......+.|+|++..+... ....|.|.++..+|+|.|+|++
T Consensus 10 ~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~~Lwf~Pa~~eDSG~Y~C~~ 89 (104)
T cd05896 10 YMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEEDSIWFRPAELQDSGLYTCVL 89 (104)
T ss_pred EEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeCCEEEEEeCChhhCeEEEEEE
Confidence 67899999999995421 2223479999985332221 4668999999999999999999
Q ss_pred EcCCCCeEEEEEEEE
Q psy14542 79 SADDDSAQMSAQVIL 93 (371)
Q Consensus 79 ~~~~~~~~~~~~l~v 93 (371)
.|........+.|+|
T Consensus 90 rN~t~C~~~~i~l~V 104 (104)
T cd05896 90 RNSTYCMKVSMSLTV 104 (104)
T ss_pred CCCCcceEEEEEEEC
Confidence 998777776666654
No 207
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=99.05 E-value=2e-09 Score=72.57 Aligned_cols=75 Identities=27% Similarity=0.388 Sum_probs=59.7
Q ss_pred eecCCeEEEEEEee-----------cCCCCceEEEeCCcccccC-------CceEEecceEEEeccCCCCCeEEEEEEEc
Q psy14542 234 VKKDESVILPCSAQ-----------GNPLPTIKWYKQDSPVEES-------DRIQRIGSSLSISHVEESDSGVWNCVANN 295 (371)
Q Consensus 234 ~~~g~~~~l~C~~~-----------~~p~~~v~W~~~~~~~~~~-------~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n 295 (371)
+.+|+.+.|.|... .....++.|+|++..+... .|+...+..|.|.++..+|+|.|+|++.|
T Consensus 12 ~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~~Lwf~Pa~~eDSG~Y~C~~rN 91 (104)
T cd05896 12 VLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEEDSIWFRPAELQDSGLYTCVLRN 91 (104)
T ss_pred EcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeCCEEEEEeCChhhCeEEEEEECC
Confidence 88999999999961 1223479999997544332 36677888999999999999999999999
Q ss_pred CCCCceeEEEEEE
Q psy14542 296 SEGQDKMQLFIQY 308 (371)
Q Consensus 296 ~~g~~~~~~~l~v 308 (371)
.......++.|.|
T Consensus 92 ~t~C~~~~i~l~V 104 (104)
T cd05896 92 STYCMKVSMSLTV 104 (104)
T ss_pred CCcceEEEEEEEC
Confidence 9888777777654
No 208
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.05 E-value=1.1e-09 Score=73.85 Aligned_cols=75 Identities=17% Similarity=0.309 Sum_probs=56.5
Q ss_pred eecCCeEEEEEEe-ec----CCCCceEEEeCCcccccCC-ceEE--ecceEEEeccCCCCCeEEEEEEEcCCCCc----e
Q psy14542 234 VKKDESVILPCSA-QG----NPLPTIKWYKQDSPVEESD-RIQR--IGSSLSISHVEESDSGVWNCVANNSEGQD----K 301 (371)
Q Consensus 234 ~~~g~~~~l~C~~-~~----~p~~~v~W~~~~~~~~~~~-~~~~--~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~----~ 301 (371)
+..|.+..|+|.- .+ ++.+.++|+|++.++.... ++.. ....|.|.++..+|+|.|+|+|.+..|.. +
T Consensus 7 ~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~~~~~~~g~~y~vt 86 (95)
T cd05897 7 LFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFYSLKGSTYLHIIDVSLNDSGYYTCKLQFTHEGKKYNIT 86 (95)
T ss_pred eccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceEecCCCCEEEEEEcChhhCEEEEEEEEEeeCCEEEEEE
Confidence 6788899999973 33 3567899999999887543 2222 34579999999999999999999987654 4
Q ss_pred eEEEEEE
Q psy14542 302 MQLFIQY 308 (371)
Q Consensus 302 ~~~~l~v 308 (371)
+++.|.|
T Consensus 87 r~~~l~v 93 (95)
T cd05897 87 RIIKLRI 93 (95)
T ss_pred EEEEEEE
Confidence 4454544
No 209
>PHA03376 BARF1; Provisional
Probab=99.04 E-value=4.6e-09 Score=77.37 Aligned_cols=115 Identities=16% Similarity=0.206 Sum_probs=74.9
Q ss_pred cEEEeccCcEEEEEEecC--CCCCCeeEEEeCC----EEEee-C---------------------CeeEEEEccCCcCCC
Q psy14542 20 QVVVDVGHRIELHCRVSP--KRLSSAKAWLKDG----LVLRR-N---------------------SDEVLVLDRVQREDA 71 (371)
Q Consensus 20 ~~~~~~G~~v~l~C~~~~--~~~~~~~~W~~~~----~~~~~-~---------------------~~~~l~i~~~~~~d~ 71 (371)
++.+..|+.+.|+|.... ..+...|.|+|.+ ..+.. . ++.+|.|.+++.+|.
T Consensus 20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDd 99 (221)
T PHA03376 20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD 99 (221)
T ss_pred chhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCC
Confidence 478899999999996552 2245569999942 21111 0 667899999999999
Q ss_pred eEEEEEEEcCCCCeEEEEEEEEecceeeEecCCceee-ecCCcEEEEEEecCCCCCceEEEeeCCE
Q psy14542 72 GMYQCHVSADDDSAQMSAQVILGGELVEIASSNQVVV-DVGHRIELHCRVSPKRLSSAKAWLKDGL 136 (371)
Q Consensus 72 G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~-~~g~~v~l~C~~~~~~~~~~v~W~~~~~ 136 (371)
|.|+|.+........+.-.|++. .|..+........ ..-+...+.|.+.++|. +.+.|..+..
T Consensus 100 GtY~C~fQkge~~~~k~ehLt~V-~~~~Lsv~a~~~dFp~~~~~~i~C~sggfP~-P~~~Wle~~~ 163 (221)
T PHA03376 100 GNYLCRMKLGETEVTKQEHLSVV-KPLTLSVHSERSQFPDFSVLTVTCTVNAFPH-PHVQWLMPEG 163 (221)
T ss_pred ceEEEEEEcCCCceeeeeeeeee-ecceEEEEeccccCCCCCeeEEEEecCCcCC-chheeccccC
Confidence 99999999765444333333333 2222222111111 22566789999777787 9999987543
No 210
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=99.03 E-value=1.1e-09 Score=69.14 Aligned_cols=57 Identities=37% Similarity=0.661 Sum_probs=45.7
Q ss_pred CCeEEEEEEe-ecCCCCceEEEeCCcccccCCceEE--ecc----eEEEeccCCCCCeEEEEEE
Q psy14542 237 DESVILPCSA-QGNPLPTIKWYKQDSPVEESDRIQR--IGS----SLSISHVEESDSGVWNCVA 293 (371)
Q Consensus 237 g~~~~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~--~~~----~l~i~~~~~~d~G~Y~C~a 293 (371)
|+.++|.|.+ .+.+...+.|++++........... ... .|.|.++..+|+|.|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence 7889999999 6677889999999987765543332 112 2999999999999999986
No 211
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=99.02 E-value=2.5e-09 Score=72.24 Aligned_cols=72 Identities=21% Similarity=0.284 Sum_probs=54.0
Q ss_pred EEEeccCcEEEEEEecCCCCCCeeEEEeCC--EE----EeeC-----CeeEEEEccCCcCCCeEEEEEEE-cCCCCeEEE
Q psy14542 21 VVVDVGHRIELHCRVSPKRLSSAKAWLKDG--LV----LRRN-----SDEVLVLDRVQREDAGMYQCHVS-ADDDSAQMS 88 (371)
Q Consensus 21 ~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~--~~----~~~~-----~~~~l~i~~~~~~d~G~Y~C~~~-~~~~~~~~~ 88 (371)
+.+.+|+++.|.|.. ..|.+.+.||+.+ .. +... ..+.|.|.+++.+|+|.|+|.+. +..+.....
T Consensus 6 ~~~~eG~~v~L~C~~--~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~a~~~~~~~~~~~ 83 (91)
T cd05871 6 VYGVENNSTFLECLP--KSPQASVKWLFQRGGDQRKEEVKTEERLIHTERGLLLRSLQRSDAGVYTCTAVEHSFSQTLAK 83 (91)
T ss_pred EEEecCCcEEEEEEC--CCCCceEEEEEECCCCCccccccccccEEEecCeEEEeeCChhHCEEEEEEEEccCCeEEEEE
Confidence 568899999999963 3678899999832 11 1111 44679999999999999999998 455556667
Q ss_pred EEEEEe
Q psy14542 89 AQVILG 94 (371)
Q Consensus 89 ~~l~v~ 94 (371)
+.|.|.
T Consensus 84 ~~l~v~ 89 (91)
T cd05871 84 YTLHVI 89 (91)
T ss_pred EEEEEe
Confidence 777775
No 212
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.99 E-value=2.6e-09 Score=72.13 Aligned_cols=62 Identities=21% Similarity=0.405 Sum_probs=47.7
Q ss_pred EEEeccCcEEEEEEecCCCCCCeeEEEeCCEEE-e-------------------------eCCeeEEEEccCCcCCCeEE
Q psy14542 21 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVL-R-------------------------RNSDEVLVLDRVQREDAGMY 74 (371)
Q Consensus 21 ~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~-~-------------------------~~~~~~l~i~~~~~~d~G~Y 74 (371)
+.+.+|++|+|+|.. .+.+.+.+.|+++++.. . .....+|.|.+++.+|+|.|
T Consensus 2 v~~~~G~~VtL~C~~-s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY 80 (94)
T cd07690 2 VLGKKGDTAELPCTA-SQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTY 80 (94)
T ss_pred eEeeCCCCEEEEEEe-CCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEE
Confidence 568899999999954 45678889999765322 0 00346799999999999999
Q ss_pred EEEEEcCCC
Q psy14542 75 QCHVSADDD 83 (371)
Q Consensus 75 ~C~~~~~~~ 83 (371)
.|.+.+..+
T Consensus 81 ~C~v~~~~~ 89 (94)
T cd07690 81 ICEVEDKKE 89 (94)
T ss_pred EEEECCccc
Confidence 999987544
No 213
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=98.98 E-value=3.2e-09 Score=71.02 Aligned_cols=69 Identities=25% Similarity=0.405 Sum_probs=53.1
Q ss_pred cCcEEEEEEecC-CCCCCeeEEEeCCEEEee----C-----------CeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEE
Q psy14542 26 GHRIELHCRVSP-KRLSSAKAWLKDGLVLRR----N-----------SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSA 89 (371)
Q Consensus 26 G~~v~l~C~~~~-~~~~~~~~W~~~~~~~~~----~-----------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~ 89 (371)
|+++.|.|.+.. ..+...+.|.+.++.... . ..+.|.|.+++.+|+|.|+|.+.|..+......
T Consensus 1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t 80 (86)
T cd05862 1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKNST 80 (86)
T ss_pred CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEecccE
Confidence 789999997653 245667899886643211 0 356899999999999999999999887777777
Q ss_pred EEEEe
Q psy14542 90 QVILG 94 (371)
Q Consensus 90 ~l~v~ 94 (371)
.|.|.
T Consensus 81 ~~~V~ 85 (86)
T cd05862 81 IVIVH 85 (86)
T ss_pred EEEEe
Confidence 77775
No 214
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=98.98 E-value=1.3e-08 Score=68.46 Aligned_cols=75 Identities=40% Similarity=0.686 Sum_probs=61.5
Q ss_pred eecCCeEEEEEEeecCCCCceEEEeC-CcccccCCceEEe----cceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEE
Q psy14542 234 VKKDESVILPCSAQGNPLPTIKWYKQ-DSPVEESDRIQRI----GSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQY 308 (371)
Q Consensus 234 ~~~g~~~~l~C~~~~~p~~~v~W~~~-~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 308 (371)
+..|+.+.|.|.+.+.+.+.+.|+++ +..+....++... ...|.|.++..+|+|.|.|.+.+..+.....+.|.|
T Consensus 6 ~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~l~V 85 (86)
T smart00410 6 VKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTTLTV 85 (86)
T ss_pred EeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEEEEE
Confidence 78899999999999887889999998 7766544444422 257999999999999999999998888777777765
No 215
>smart00409 IG Immunoglobulin.
Probab=98.98 E-value=1.3e-08 Score=68.46 Aligned_cols=75 Identities=40% Similarity=0.686 Sum_probs=61.5
Q ss_pred eecCCeEEEEEEeecCCCCceEEEeC-CcccccCCceEEe----cceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEE
Q psy14542 234 VKKDESVILPCSAQGNPLPTIKWYKQ-DSPVEESDRIQRI----GSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQY 308 (371)
Q Consensus 234 ~~~g~~~~l~C~~~~~p~~~v~W~~~-~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 308 (371)
+..|+.+.|.|.+.+.+.+.+.|+++ +..+....++... ...|.|.++..+|+|.|.|.+.+..+.....+.|.|
T Consensus 6 ~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~l~V 85 (86)
T smart00409 6 VKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTTLTV 85 (86)
T ss_pred EeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEEEEE
Confidence 78899999999999887889999998 7766544444422 257999999999999999999998888777777765
No 216
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=98.97 E-value=4.2e-09 Score=68.21 Aligned_cols=56 Identities=16% Similarity=0.354 Sum_probs=47.8
Q ss_pred EEEEEEecCCCCCCeeEEEeCCEEEeeC-----------CeeEEEEccCCcCCCeEEEEEEEcCCCC
Q psy14542 29 IELHCRVSPKRLSSAKAWLKDGLVLRRN-----------SDEVLVLDRVQREDAGMYQCHVSADDDS 84 (371)
Q Consensus 29 v~l~C~~~~~~~~~~~~W~~~~~~~~~~-----------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 84 (371)
++|.|....+.|.+.|.||||++++... ..+.|.|.....+|.+.|+|.|.|..+.
T Consensus 2 ~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~ 68 (80)
T cd05885 2 VELTCLSPRSKPAATLRWYRDRKELKGVISQQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALV 68 (80)
T ss_pred EEEEEeCCCccCCCeEEEEECCEECCCCcccccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhC
Confidence 7899988889999999999999988543 2346999999999999999999987754
No 217
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=98.97 E-value=7.5e-09 Score=68.05 Aligned_cols=65 Identities=25% Similarity=0.454 Sum_probs=55.2
Q ss_pred eecCCeEEEEEEeecCCCCceEEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCCCc
Q psy14542 234 VKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQD 300 (371)
Q Consensus 234 ~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~ 300 (371)
+..|+++.|.|...+. .+.+.|++++..+..+.++.....-|.|..+..+|+|.|.|.+. +.|..
T Consensus 8 v~~g~~v~L~C~~~s~-~A~v~W~~ng~~l~~~~r~~~~~~GLlI~~~~~~dsG~Y~C~s~-E~gf~ 72 (85)
T cd05872 8 VAPGADVVLPCQLRSN-LASPVWLFNGTPLNAQFSYRVGTDGLLILVTSPEHSGTYRCYSE-EEGFQ 72 (85)
T ss_pred EecCCCEEEECCCCCC-CccEEEEECCcccCCCcceEEeCCCCEEEECCHhhCEEEEEEEe-cCCCe
Confidence 8899999999998754 66999999999998877777777778899999999999999987 33443
No 218
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=98.97 E-value=1.9e-09 Score=72.66 Aligned_cols=65 Identities=20% Similarity=0.397 Sum_probs=51.6
Q ss_pred EEEeccCcEEEEEEecC----CCCCCeeEEEeCCEEEeeC--------CeeEEEEccCCcCCCeEEEEEEEcCCCCe
Q psy14542 21 VVVDVGHRIELHCRVSP----KRLSSAKAWLKDGLVLRRN--------SDEVLVLDRVQREDAGMYQCHVSADDDSA 85 (371)
Q Consensus 21 ~~~~~G~~v~l~C~~~~----~~~~~~~~W~~~~~~~~~~--------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~ 85 (371)
..+.+|.+..|.|.... ..+.+.+.||||+..+... ....|.|.+++.+|+|.|+|.+.+..+..
T Consensus 5 ~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~~~~~~~g~ 81 (95)
T cd05897 5 QILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFYSLKGSTYLHIIDVSLNDSGYYTCKLQFTHEGK 81 (95)
T ss_pred eEeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceEecCCCCEEEEEEcChhhCEEEEEEEEEeeCCE
Confidence 46788999999995322 3456789999999887532 33579999999999999999999876544
No 219
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=98.96 E-value=9.4e-09 Score=70.58 Aligned_cols=74 Identities=23% Similarity=0.364 Sum_probs=54.1
Q ss_pred eecCCeEEEEEEeecCCCCceEEEeCCccc--------ccCCceEE-----ecceEEEeccCCCCCeEEEEEEEcCCCCc
Q psy14542 234 VKKDESVILPCSAQGNPLPTIKWYKQDSPV--------EESDRIQR-----IGSSLSISHVEESDSGVWNCVANNSEGQD 300 (371)
Q Consensus 234 ~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~--------~~~~~~~~-----~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~ 300 (371)
+.+|+++.|.|.+.+.+.+.+.|++.+..+ ....++.. ....|.|.+++.+|+|.|.|.+.+... .
T Consensus 9 v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~-~ 87 (95)
T cd05717 9 VVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLYTMPV-Q 87 (95)
T ss_pred EcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEecCCC-c
Confidence 889999999999988888899998533211 12234443 234799999999999999999997653 3
Q ss_pred eeEEEEEE
Q psy14542 301 KMQLFIQY 308 (371)
Q Consensus 301 ~~~~~l~v 308 (371)
..++.|.|
T Consensus 88 ~~~~~~~v 95 (95)
T cd05717 88 TAKATVTV 95 (95)
T ss_pred eEEEEEEC
Confidence 55555543
No 220
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=98.95 E-value=4.3e-09 Score=66.15 Aligned_cols=57 Identities=30% Similarity=0.546 Sum_probs=47.5
Q ss_pred ccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC-----CeeEEEEccCCcCCCeEEEEEEEcCC
Q psy14542 25 VGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN-----SDEVLVLDRVQREDAGMYQCHVSADD 82 (371)
Q Consensus 25 ~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~-----~~~~l~i~~~~~~d~G~Y~C~~~~~~ 82 (371)
+|++++|.|. ..+.+.+.+.|++++..+... ....|.|.+++.+|+|.|+|.+.+..
T Consensus 1 ~g~~~~l~C~-~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~ 62 (63)
T smart00408 1 EGQSVTLTCP-AEGDPVPNITWLKDGKPLPESNRLSASGSTLTIKSVSLEDSGEYTCVAENSA 62 (63)
T ss_pred CCceEEEEee-CccCCCCeEEEEECCEECCCCCEEecCCcEEEEeeCCcccCEEEEEEEecCC
Confidence 5899999996 456777889999998776521 56789999999999999999998754
No 221
>smart00409 IG Immunoglobulin.
Probab=98.94 E-value=2.1e-08 Score=67.42 Aligned_cols=72 Identities=29% Similarity=0.562 Sum_probs=57.7
Q ss_pred EEEeccCcEEEEEEecCCCCCCeeEEEeC-CEEEeeC---------CeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEEE
Q psy14542 21 VVVDVGHRIELHCRVSPKRLSSAKAWLKD-GLVLRRN---------SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQ 90 (371)
Q Consensus 21 ~~~~~G~~v~l~C~~~~~~~~~~~~W~~~-~~~~~~~---------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~ 90 (371)
..+.+|+++.|.|..... +...+.|+++ +..+... ....|.|.+++.+|+|.|.|.+.+..+.....+.
T Consensus 4 ~~~~~g~~~~l~C~~~~~-~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~ 82 (86)
T smart00409 4 VTVKEGESVTLSCEVSGS-PPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTT 82 (86)
T ss_pred EEEeCCCeEEEEEEEccC-CCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEE
Confidence 678899999999966544 7788999998 6655311 3478999999999999999999987777666666
Q ss_pred EEE
Q psy14542 91 VIL 93 (371)
Q Consensus 91 l~v 93 (371)
|.|
T Consensus 83 l~V 85 (86)
T smart00409 83 LTV 85 (86)
T ss_pred EEE
Confidence 665
No 222
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=98.94 E-value=2.1e-08 Score=67.42 Aligned_cols=72 Identities=29% Similarity=0.562 Sum_probs=57.7
Q ss_pred EEEeccCcEEEEEEecCCCCCCeeEEEeC-CEEEeeC---------CeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEEE
Q psy14542 21 VVVDVGHRIELHCRVSPKRLSSAKAWLKD-GLVLRRN---------SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQ 90 (371)
Q Consensus 21 ~~~~~G~~v~l~C~~~~~~~~~~~~W~~~-~~~~~~~---------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~ 90 (371)
..+.+|+++.|.|..... +...+.|+++ +..+... ....|.|.+++.+|+|.|.|.+.+..+.....+.
T Consensus 4 ~~~~~g~~~~l~C~~~~~-~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~ 82 (86)
T smart00410 4 VTVKEGESVTLSCEVSGS-PPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTT 82 (86)
T ss_pred EEEeCCCeEEEEEEEccC-CCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEE
Confidence 678899999999966544 7788999998 6655311 3478999999999999999999987777666666
Q ss_pred EEE
Q psy14542 91 VIL 93 (371)
Q Consensus 91 l~v 93 (371)
|.|
T Consensus 83 l~V 85 (86)
T smart00410 83 LTV 85 (86)
T ss_pred EEE
Confidence 665
No 223
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=98.93 E-value=1.2e-08 Score=70.00 Aligned_cols=71 Identities=25% Similarity=0.389 Sum_probs=50.8
Q ss_pred EEEeccCcEEEEEEecCCCCCCeeEEEeCCEE---------Eee---------CCeeEEEEccCCcCCCeEEEEEEEcCC
Q psy14542 21 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLV---------LRR---------NSDEVLVLDRVQREDAGMYQCHVSADD 82 (371)
Q Consensus 21 ~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~---------~~~---------~~~~~l~i~~~~~~d~G~Y~C~~~~~~ 82 (371)
+.+.+|++++|.|.+. +.+.+.+.|++.+.. +.. ....+|.|.+++.+|+|.|.|.+....
T Consensus 7 ~~v~~G~~v~L~C~~~-~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~ 85 (95)
T cd05717 7 VTVVEGGTATLKCRVK-NNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLYTMP 85 (95)
T ss_pred EEEcCCCCEEEEEEEC-CCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEecCC
Confidence 7899999999999664 456788999752111 100 034689999999999999999998654
Q ss_pred CCeEEEEEEEE
Q psy14542 83 DSAQMSAQVIL 93 (371)
Q Consensus 83 ~~~~~~~~l~v 93 (371)
. ..+.+.|+|
T Consensus 86 ~-~~~~~~~~v 95 (95)
T cd05717 86 V-QTAKATVTV 95 (95)
T ss_pred C-ceEEEEEEC
Confidence 3 355555543
No 224
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.92 E-value=3.8e-09 Score=71.32 Aligned_cols=66 Identities=21% Similarity=0.349 Sum_probs=50.3
Q ss_pred eecCCeEEEEEEeecCCCCceEEEeCCcccc--------------cCCceEE-------ecceEEEeccCCCCCeEEEEE
Q psy14542 234 VKKDESVILPCSAQGNPLPTIKWYKQDSPVE--------------ESDRIQR-------IGSSLSISHVEESDSGVWNCV 292 (371)
Q Consensus 234 ~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~--------------~~~~~~~-------~~~~l~i~~~~~~d~G~Y~C~ 292 (371)
+..|+.++|.|.+.+.+.+.+.|++++.... ...++.. ....|.|.++..+|+|.|.|.
T Consensus 4 ~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~C~ 83 (94)
T cd07690 4 GKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYICE 83 (94)
T ss_pred eeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEEEE
Confidence 7889999999999988889999997663211 1112221 113699999999999999999
Q ss_pred EEcCCCC
Q psy14542 293 ANNSEGQ 299 (371)
Q Consensus 293 a~n~~g~ 299 (371)
+.|..++
T Consensus 84 v~~~~~~ 90 (94)
T cd07690 84 VEDKKEE 90 (94)
T ss_pred ECCccce
Confidence 9987765
No 225
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=98.91 E-value=6.5e-09 Score=71.79 Aligned_cols=71 Identities=20% Similarity=0.296 Sum_probs=51.0
Q ss_pred EEEeccCcEEEEEEecCCCCCCeeEEEeCCE-----EEeeC--------------------CeeEEEEccCCcCCCeEEE
Q psy14542 21 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGL-----VLRRN--------------------SDEVLVLDRVQREDAGMYQ 75 (371)
Q Consensus 21 ~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~-----~~~~~--------------------~~~~l~i~~~~~~d~G~Y~ 75 (371)
..+.+|+++.|.|.... .....+.|+|+.. .+..- .+++|.|.+++.+|+|.|+
T Consensus 8 ~~~~~G~~V~L~v~~~p-~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ngSL~I~~v~~~D~G~Y~ 86 (105)
T cd05774 8 PQVAEGENVLLLVHNLP-ENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNGSLLIQNVTQKDTGFYT 86 (105)
T ss_pred CcccCCCCEEEEecCCC-CCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCCcEEEecCCcccCEEEE
Confidence 45899999999995432 2344799999621 11110 5679999999999999999
Q ss_pred EEEEcCCC-CeEEEEEEE
Q psy14542 76 CHVSADDD-SAQMSAQVI 92 (371)
Q Consensus 76 C~~~~~~~-~~~~~~~l~ 92 (371)
|.+.+... .....+.|.
T Consensus 87 ~~v~~~~~~~~~~~v~l~ 104 (105)
T cd05774 87 LQTITTNFQVEQATVHLQ 104 (105)
T ss_pred EEEEeCCccEEEEEEEEE
Confidence 99998763 344555554
No 226
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=98.90 E-value=1.5e-09 Score=68.59 Aligned_cols=53 Identities=34% Similarity=0.607 Sum_probs=41.3
Q ss_pred cCcEEEEEEecCCCCCCeeEEEeCCEEEeeC--------Ce---eEEEEccCCcCCCeEEEEEE
Q psy14542 26 GHRIELHCRVSPKRLSSAKAWLKDGLVLRRN--------SD---EVLVLDRVQREDAGMYQCHV 78 (371)
Q Consensus 26 G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~--------~~---~~l~i~~~~~~d~G~Y~C~~ 78 (371)
|++++|.|.+....+...+.|++++...... .. ..|.|.+++.+|+|.|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v 64 (64)
T PF00047_consen 1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV 64 (64)
T ss_dssp TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence 7899999976466778899999976533322 11 12999999999999999986
No 227
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.87 E-value=2e-08 Score=66.82 Aligned_cols=64 Identities=20% Similarity=0.423 Sum_probs=47.3
Q ss_pred EEEEEEeec-CCCCceEEEeCCcccccCCce---------EEecceEEEeccCCCCCeEEEEEEEcCCCCceeE
Q psy14542 240 VILPCSAQG-NPLPTIKWYKQDSPVEESDRI---------QRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQ 303 (371)
Q Consensus 240 ~~l~C~~~~-~p~~~v~W~~~~~~~~~~~~~---------~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~ 303 (371)
+.|+|.+.| .|.+.++|+++|..+...... ....+.|.+.....+|.|.|+|.|.|........
T Consensus 2 ~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~~~ 75 (82)
T cd05759 2 YNLTCRARGAKPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPTGKE 75 (82)
T ss_pred EEEEEEEeCccCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCCCcE
Confidence 689999987 688899999999877543211 1122467888888889999999999987654333
No 228
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=98.84 E-value=1.8e-08 Score=68.31 Aligned_cols=62 Identities=15% Similarity=0.276 Sum_probs=48.7
Q ss_pred eecCCeEEEEEEeecCCCCceEEEeCCcccccCC-ceEEecceEEEeccCCCCCeEEEEEEEcC
Q psy14542 234 VKKDESVILPCSAQGNPLPTIKWYKQDSPVEESD-RIQRIGSSLSISHVEESDSGVWNCVANNS 296 (371)
Q Consensus 234 ~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~-~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~ 296 (371)
+..|+.++|.|... .+...+.|+++|....... ......+.+.|.++..+|+|.|+|...+.
T Consensus 13 V~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~~~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~ 75 (91)
T cd05751 13 VPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVKKPPEPQNKAKFFIPSMKREHAGRYRCYYRSG 75 (91)
T ss_pred cCCCCcEEEEEecC-CCCCEEEEEECCCCccccccCCCceeEEEEccCCChhHCEEEEEEEECC
Confidence 89999999999875 6667899999987543211 11133467999999999999999999886
No 229
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.83 E-value=6.8e-08 Score=62.48 Aligned_cols=81 Identities=17% Similarity=0.268 Sum_probs=57.9
Q ss_pred eEEEeCCCcEEEeccCcEEEEEEecCC-CCCCeeEEEeCCEEEee---CCeeEEEEccCCcCCCeEEEEEEEcCCCCeEE
Q psy14542 12 SIEMSPSGQVVVDVGHRIELHCRVSPK-RLSSAKAWLKDGLVLRR---NSDEVLVLDRVQREDAGMYQCHVSADDDSAQM 87 (371)
Q Consensus 12 ~~~~~p~~~~~~~~G~~v~l~C~~~~~-~~~~~~~W~~~~~~~~~---~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~ 87 (371)
++++.+.. .+..|++++|+|+...+ .|.+.++|+..+..... ....+|.+..++..|+|.|+|.+..+......
T Consensus 2 kvT~s~~~--~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~~~~~~~ktL~~~qv~~qdSG~WtC~V~~~~k~~~~ 79 (88)
T cd07694 2 KLTATSSD--HVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQILNQDKKTLNLVQLGPNDSGTWDCIVSVNSSEKTL 79 (88)
T ss_pred eEecCCCC--eeecCCcEEEEEecCCCCCCCccEEEeCCCCccceeccCCccEEEeceeCcccCCEEEEEEEECceEEEE
Confidence 35555544 79999999999965443 34558999985443221 26789999999999999999999865444455
Q ss_pred EEEEEEe
Q psy14542 88 SAQVILG 94 (371)
Q Consensus 88 ~~~l~v~ 94 (371)
.+.|.|.
T Consensus 80 ~~~V~Vl 86 (88)
T cd07694 80 KLDIKVL 86 (88)
T ss_pred EeeEEEE
Confidence 5555554
No 230
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=98.81 E-value=2.1e-08 Score=65.52 Aligned_cols=69 Identities=25% Similarity=0.446 Sum_probs=50.7
Q ss_pred cceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEE------eCCEEEeeCCeeEEEEccCCcCCCeEEEEEEEc
Q psy14542 10 SLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWL------KDGLVLRRNSDEVLVLDRVQREDAGMYQCHVSA 80 (371)
Q Consensus 10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~------~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~ 80 (371)
+|.|.+.+.. .....+. ++|.|.+....+...++|+ .............|.|.++..+|.|.|+|.|.|
T Consensus 1 kP~I~~~~~~-~~~~~~~-~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N 75 (75)
T PF13927_consen 1 KPQISVPPPP-VVTSGGS-VTLTCSAEGGPPPPSISWYDSNPSFNSNSRGSSSSNSTLTISNVTRSDNGTYTCIASN 75 (75)
T ss_dssp ESEEEEESTS-EEETTEE-EEEEEEESSEESSEEEEEETEEEEEEEEEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred CCEEEEcCCC-cEeecee-EEEEEEEccccCCeEEEEEecCCceeeeeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence 4677888887 4444444 9999977666558889999 222222222778899999999999999999975
No 231
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=98.80 E-value=7.1e-08 Score=64.97 Aligned_cols=73 Identities=22% Similarity=0.336 Sum_probs=59.8
Q ss_pred EEEeccCcEEEEEEecCCCCCCe-eEEEeCCEEEeeC--------------CeeEEEEccCCcCCCeEEEEEEEcCCCCe
Q psy14542 21 VVVDVGHRIELHCRVSPKRLSSA-KAWLKDGLVLRRN--------------SDEVLVLDRVQREDAGMYQCHVSADDDSA 85 (371)
Q Consensus 21 ~~~~~G~~v~l~C~~~~~~~~~~-~~W~~~~~~~~~~--------------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~ 85 (371)
+.|.+|+++.|.| ...++|.+. +.|.+++..+... -.+.|.+..++.+|+|.|+|.+.|.....
T Consensus 13 ~~v~~gE~~~L~V-~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~~ 91 (101)
T cd05860 13 IFVNAGENLDLIV-EYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDASA 91 (101)
T ss_pred EEEECCCCEEEEE-EEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCeE
Confidence 6899999999999 556778776 9999875533221 23689999999999999999999998888
Q ss_pred EEEEEEEEe
Q psy14542 86 QMSAQVILG 94 (371)
Q Consensus 86 ~~~~~l~v~ 94 (371)
+.++.|.|.
T Consensus 92 s~tF~l~v~ 100 (101)
T cd05860 92 SVTFNVYVN 100 (101)
T ss_pred EEEEEEEEe
Confidence 888888764
No 232
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.79 E-value=3.4e-08 Score=69.37 Aligned_cols=70 Identities=24% Similarity=0.345 Sum_probs=52.6
Q ss_pred ccCcEEEEEEecCC-----CCCCeeEEEeCCE----E---E-eeC--------------------CeeEEEEccCCcCCC
Q psy14542 25 VGHRIELHCRVSPK-----RLSSAKAWLKDGL----V---L-RRN--------------------SDEVLVLDRVQREDA 71 (371)
Q Consensus 25 ~G~~v~l~C~~~~~-----~~~~~~~W~~~~~----~---~-~~~--------------------~~~~l~i~~~~~~d~ 71 (371)
.|++++|.|..... .....+.|+|... . + ... ...+|.|.+++.+|+
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds 80 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY 80 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence 48999999976543 2345699998431 1 1 100 246899999999999
Q ss_pred eEEEEEEEcCCCCeEEEEEEEEe
Q psy14542 72 GMYQCHVSADDDSAQMSAQVILG 94 (371)
Q Consensus 72 G~Y~C~~~~~~~~~~~~~~l~v~ 94 (371)
|.|.|.+.+..+.....+.|.|.
T Consensus 81 G~Y~C~v~~~~~~~~~~~~l~v~ 103 (106)
T cd05877 81 GRYRCEVIDGLEDESVVVALRLR 103 (106)
T ss_pred EEEEEEEEecccceEEEEEEEEE
Confidence 99999999888878888888876
No 233
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=98.79 E-value=3.2e-08 Score=65.11 Aligned_cols=72 Identities=19% Similarity=0.344 Sum_probs=52.8
Q ss_pred EEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC-----CeeEEEEccCCcCCCeEEEEEEEcCC-CCeEEEEEEEEe
Q psy14542 21 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN-----SDEVLVLDRVQREDAGMYQCHVSADD-DSAQMSAQVILG 94 (371)
Q Consensus 21 ~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~-----~~~~l~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~~l~v~ 94 (371)
..+.+|+++.|.|... + ....+.|++++..+... ....|.|.+++.+|+|.|.|.+.-.+ ........|.|.
T Consensus 6 ~tv~~g~~v~L~C~~~-s-~~A~v~W~~ng~~l~~~~r~~~~~~GLlI~~~~~~dsG~Y~C~s~E~gf~~~~~~y~l~v~ 83 (85)
T cd05872 6 RTVAPGADVVLPCQLR-S-NLASPVWLFNGTPLNAQFSYRVGTDGLLILVTSPEHSGTYRCYSEEEGFQQLVASYSLNVV 83 (85)
T ss_pred EEEecCCCEEEECCCC-C-CCccEEEEECCcccCCCcceEEeCCCCEEEECCHhhCEEEEEEEecCCCeEEEEEEEEEEe
Confidence 6799999999999543 3 36689999999877542 44457899999999999999987332 222344555443
No 234
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=98.78 E-value=8.8e-08 Score=67.60 Aligned_cols=72 Identities=19% Similarity=0.362 Sum_probs=52.1
Q ss_pred EEEeccCcEEEEEEecCCC---CCCeeEE---------------EeCCEEEee--C--------------CeeEEEEccC
Q psy14542 21 VVVDVGHRIELHCRVSPKR---LSSAKAW---------------LKDGLVLRR--N--------------SDEVLVLDRV 66 (371)
Q Consensus 21 ~~~~~G~~v~l~C~~~~~~---~~~~~~W---------------~~~~~~~~~--~--------------~~~~l~i~~~ 66 (371)
+.+..|+.++|.|...... +...+.| |++|..... . .+.+|.|.++
T Consensus 8 v~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I~nv 87 (116)
T cd05879 8 VYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVIHNL 87 (116)
T ss_pred EEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEEccC
Confidence 7899999999999876532 3457999 334443321 1 5678999999
Q ss_pred CcCCCeEEEEEEEcCCCCe--EEEEEEE
Q psy14542 67 QREDAGMYQCHVSADDDSA--QMSAQVI 92 (371)
Q Consensus 67 ~~~d~G~Y~C~~~~~~~~~--~~~~~l~ 92 (371)
+.+|+|.|+|.+.+..+.. ...+.|.
T Consensus 88 ~~sD~G~Y~C~v~n~p~~~~~~~~~~l~ 115 (116)
T cd05879 88 DYTDNGTFTCDVKNPPDIVGKSSQVTLY 115 (116)
T ss_pred CcccCEEEEEEEEcCCCcCCceeEEEEE
Confidence 9999999999999765432 3444443
No 235
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=98.78 E-value=1.3e-07 Score=63.78 Aligned_cols=59 Identities=24% Similarity=0.302 Sum_probs=45.3
Q ss_pred EEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEe---------e---------CCeeEEEEccCCcCCCeEEEEEEEc
Q psy14542 21 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLR---------R---------NSDEVLVLDRVQREDAGMYQCHVSA 80 (371)
Q Consensus 21 ~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~---------~---------~~~~~l~i~~~~~~d~G~Y~C~~~~ 80 (371)
+.+.+|++++|.|.+... ....+.|++-+..+. . +...+|.|.+++.+|+|.|.|.+..
T Consensus 7 vtv~~G~ta~L~C~v~~~-~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t 83 (95)
T cd05881 7 VTVVEGEVAIISCRVKNN-DDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYT 83 (95)
T ss_pred eEEcCCCcEEEEEEEccC-CccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEc
Confidence 789999999999966543 355688877553321 0 1566899999999999999999975
No 236
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=98.77 E-value=7.9e-08 Score=67.48 Aligned_cols=70 Identities=23% Similarity=0.387 Sum_probs=53.2
Q ss_pred ccCcEEEEEEecCC-----CCCCeeEEEeCC-----E-EEee--C--------------------CeeEEEEccCCcCCC
Q psy14542 25 VGHRIELHCRVSPK-----RLSSAKAWLKDG-----L-VLRR--N--------------------SDEVLVLDRVQREDA 71 (371)
Q Consensus 25 ~G~~v~l~C~~~~~-----~~~~~~~W~~~~-----~-~~~~--~--------------------~~~~l~i~~~~~~d~ 71 (371)
.|++++|.|..... .....+.|++.. . .+.. . ...+|.|.+++.+|+
T Consensus 1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~ 80 (106)
T cd05714 1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS 80 (106)
T ss_pred CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence 48999999976543 235679999851 1 1100 0 467899999999999
Q ss_pred eEEEEEEEcCCCCeEEEEEEEEe
Q psy14542 72 GMYQCHVSADDDSAQMSAQVILG 94 (371)
Q Consensus 72 G~Y~C~~~~~~~~~~~~~~l~v~ 94 (371)
|.|.|.+.+..+.....+.|.|.
T Consensus 81 G~Y~C~v~~~~~~~~~~v~L~V~ 103 (106)
T cd05714 81 GRYRCEVIDGIEDEQDTVELEVR 103 (106)
T ss_pred EEEEEEEEcCCCceEEEEEEEEE
Confidence 99999999877777888888876
No 237
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=98.77 E-value=4.8e-08 Score=67.04 Aligned_cols=71 Identities=14% Similarity=0.212 Sum_probs=51.4
Q ss_pred eccCcEEEEEEecCCCCCCeeEEEeCCEEEee-------C-----------------CeeEEEEccCCcCCCeEEEEEEE
Q psy14542 24 DVGHRIELHCRVSPKRLSSAKAWLKDGLVLRR-------N-----------------SDEVLVLDRVQREDAGMYQCHVS 79 (371)
Q Consensus 24 ~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~-------~-----------------~~~~l~i~~~~~~d~G~Y~C~~~ 79 (371)
..|++|+|.|..........+.|++....+.. . .+.+|.|.+++.+|+|.|.|.+.
T Consensus 2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~ 81 (97)
T cd05775 2 ILGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEIN 81 (97)
T ss_pred ccCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEE
Confidence 47999999996544244567999985422110 0 45899999999999999999999
Q ss_pred cCCCCe-EEEEEEEEe
Q psy14542 80 ADDDSA-QMSAQVILG 94 (371)
Q Consensus 80 ~~~~~~-~~~~~l~v~ 94 (371)
...+.. ...+.|.|+
T Consensus 82 ~~~~~~~~~~f~L~vy 97 (97)
T cd05775 82 TKNGVTITKEFTLHIY 97 (97)
T ss_pred cCCCCeEEEEEEEEeC
Confidence 776544 566766663
No 238
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=98.75 E-value=1e-08 Score=67.06 Aligned_cols=59 Identities=41% Similarity=0.739 Sum_probs=41.8
Q ss_pred CCeEEEEEEeecCC-CCceEEEeCCc-ccccCCceEEecceEEEeccCCCCCeEEEEEEEc
Q psy14542 237 DESVILPCSAQGNP-LPTIKWYKQDS-PVEESDRIQRIGSSLSISHVEESDSGVWNCVANN 295 (371)
Q Consensus 237 g~~~~l~C~~~~~p-~~~v~W~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n 295 (371)
+..+.|.|.+.+.+ .+.++|+.... ............+.|.|.++..+|.|.|+|.|+|
T Consensus 15 ~~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N 75 (75)
T PF13927_consen 15 GGSVTLTCSAEGGPPPPSISWYDSNPSFNSNSRGSSSSNSTLTISNVTRSDNGTYTCIASN 75 (75)
T ss_dssp TEEEEEEEEESSEESSEEEEEETEEEEEEEEEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred ceeEEEEEEEccccCCeEEEEEecCCceeeeeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence 33399999999877 78899991110 1111111224557899999999999999999987
No 239
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=98.74 E-value=8.6e-08 Score=66.52 Aligned_cols=68 Identities=22% Similarity=0.485 Sum_probs=48.1
Q ss_pred cCcEEEEEEecCCC--CCCeeEEEeCCE--EE---------ee-------C-----------CeeEEEEccCCcCCCeEE
Q psy14542 26 GHRIELHCRVSPKR--LSSAKAWLKDGL--VL---------RR-------N-----------SDEVLVLDRVQREDAGMY 74 (371)
Q Consensus 26 G~~v~l~C~~~~~~--~~~~~~W~~~~~--~~---------~~-------~-----------~~~~l~i~~~~~~d~G~Y 74 (371)
|++++|+|...... ....+.|++... .+ .. . ...+|.|.+++.+|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y 80 (100)
T cd05713 1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLY 80 (100)
T ss_pred CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEE
Confidence 78999999765321 123578877431 11 00 0 246899999999999999
Q ss_pred EEEEEcCCCCeEEEEEEEE
Q psy14542 75 QCHVSADDDSAQMSAQVIL 93 (371)
Q Consensus 75 ~C~~~~~~~~~~~~~~l~v 93 (371)
+|.+.+..+..+..+.|.|
T Consensus 81 ~C~v~~~~~~~~~~i~l~v 99 (100)
T cd05713 81 TCFFQSDGFYEEATVELKV 99 (100)
T ss_pred EEEEecCCcEEEEEEEEEE
Confidence 9999987776777777776
No 240
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=98.74 E-value=1.2e-07 Score=66.67 Aligned_cols=70 Identities=20% Similarity=0.351 Sum_probs=52.2
Q ss_pred ccCcEEEEEEecCCCC---------CCeeEEEeC--CEEEe-----------eC---------------CeeEEEEccCC
Q psy14542 25 VGHRIELHCRVSPKRL---------SSAKAWLKD--GLVLR-----------RN---------------SDEVLVLDRVQ 67 (371)
Q Consensus 25 ~G~~v~l~C~~~~~~~---------~~~~~W~~~--~~~~~-----------~~---------------~~~~l~i~~~~ 67 (371)
.|++++|+|......+ ...+.|+|. ++... .. ...+|.|.+++
T Consensus 1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~ 80 (110)
T cd05878 1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR 80 (110)
T ss_pred CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence 3899999997654332 366999984 11100 00 34789999999
Q ss_pred cCCCeEEEEEEEcCCCCeEEEEEEEEe
Q psy14542 68 REDAGMYQCHVSADDDSAQMSAQVILG 94 (371)
Q Consensus 68 ~~d~G~Y~C~~~~~~~~~~~~~~l~v~ 94 (371)
.+|+|.|.|.+.......+..+.|.|.
T Consensus 81 ~sD~G~Y~C~v~~~~~~~~~~v~l~V~ 107 (110)
T cd05878 81 SSDSGVYRCEVMHGIEDEQDTVPLEVT 107 (110)
T ss_pred hhhCEEEEEEEEeCCCcceEEEEEEEE
Confidence 999999999999876777888888886
No 241
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=98.73 E-value=5.4e-08 Score=66.95 Aligned_cols=69 Identities=19% Similarity=0.274 Sum_probs=50.9
Q ss_pred cCcEEEEEEecCCCCCCeeEEEeCCE----EEe-e----C------------------CeeEEEEccCCcCCCeEEEEEE
Q psy14542 26 GHRIELHCRVSPKRLSSAKAWLKDGL----VLR-R----N------------------SDEVLVLDRVQREDAGMYQCHV 78 (371)
Q Consensus 26 G~~v~l~C~~~~~~~~~~~~W~~~~~----~~~-~----~------------------~~~~l~i~~~~~~d~G~Y~C~~ 78 (371)
|++++|.|..........+.|+|... .+. . . ...+|.|.+++.+|+|.|.|.+
T Consensus 1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~ 80 (97)
T cd05846 1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF 80 (97)
T ss_pred CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence 78999999755443334699998421 111 0 0 5678999999999999999998
Q ss_pred E-cCCCCeEEEEEEEEe
Q psy14542 79 S-ADDDSAQMSAQVILG 94 (371)
Q Consensus 79 ~-~~~~~~~~~~~l~v~ 94 (371)
. .+.|..+..+.|+|+
T Consensus 81 ~~~p~g~~~~~~~L~v~ 97 (97)
T cd05846 81 NTFPDGSKSGTMCLTVY 97 (97)
T ss_pred EeCCCCCeeeEEEEEEC
Confidence 7 566777888888874
No 242
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=98.72 E-value=7.7e-08 Score=65.52 Aligned_cols=67 Identities=24% Similarity=0.287 Sum_probs=51.1
Q ss_pred cceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEee----C-----CeeEEEEccCCcCCCeEEEEEEEc
Q psy14542 10 SLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRR----N-----SDEVLVLDRVQREDAGMYQCHVSA 80 (371)
Q Consensus 10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~----~-----~~~~l~i~~~~~~d~G~Y~C~~~~ 80 (371)
+|.|...|.. .+.+|++|+|.|.... ....+.|+|+|..... . ....|.|.+++.+|+|.|+|....
T Consensus 1 kP~l~a~p~~--vV~~G~~VTL~C~~~~--~~~~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~~ 76 (94)
T cd05711 1 KPFLSAHPSP--VVPSGENVTLQCHSDI--RFDRFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGSY 76 (94)
T ss_pred CCEEEecCCC--ccCCCCeEEEEEecCC--CCCEEEEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEEEEEEEC
Confidence 3677777765 7899999999995433 4457999997754221 1 356789999999999999999863
No 243
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=98.71 E-value=1.3e-07 Score=65.30 Aligned_cols=74 Identities=23% Similarity=0.312 Sum_probs=51.8
Q ss_pred eecCCeEEEEEEeecCCCCceEEEeCCcccc-------------------cCCceE-EecceEEEeccCCCCCeEEEEEE
Q psy14542 234 VKKDESVILPCSAQGNPLPTIKWYKQDSPVE-------------------ESDRIQ-RIGSSLSISHVEESDSGVWNCVA 293 (371)
Q Consensus 234 ~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~-------------------~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~a 293 (371)
+.+|+++.|.|.........+.|+|...... ..+|.. ..+++|.|.+++.+|+|.|+|.+
T Consensus 10 ~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ngSL~I~~v~~~D~G~Y~~~v 89 (105)
T cd05774 10 VAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNGSLLIQNVTQKDTGFYTLQT 89 (105)
T ss_pred ccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCCcEEEecCCcccCEEEEEEE
Confidence 8899999999975433334799999632110 112222 34578999999999999999999
Q ss_pred EcCCC-CceeEEEEE
Q psy14542 294 NNSEG-QDKMQLFIQ 307 (371)
Q Consensus 294 ~n~~g-~~~~~~~l~ 307 (371)
.+... ....++.|.
T Consensus 90 ~~~~~~~~~~~v~l~ 104 (105)
T cd05774 90 ITTNFQVEQATVHLQ 104 (105)
T ss_pred EeCCccEEEEEEEEE
Confidence 98874 445555554
No 244
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=98.71 E-value=6e-08 Score=66.23 Aligned_cols=66 Identities=17% Similarity=0.321 Sum_probs=47.1
Q ss_pred cCcEEEEEEecCCCCCCeeEEEeCCEE-----Ee----eC---------------CeeEEEEccCCcCCCeEEEEEEEcC
Q psy14542 26 GHRIELHCRVSPKRLSSAKAWLKDGLV-----LR----RN---------------SDEVLVLDRVQREDAGMYQCHVSAD 81 (371)
Q Consensus 26 G~~v~l~C~~~~~~~~~~~~W~~~~~~-----~~----~~---------------~~~~l~i~~~~~~d~G~Y~C~~~~~ 81 (371)
|++|+|.|.... .....+.|+++... +. .. .+.+|.|.+++.+|+|.|+|.+...
T Consensus 1 G~~VtL~c~~~~-~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~l~~~DsG~Y~c~v~~~ 79 (92)
T cd05741 1 GESVTLPVSNLP-ENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPNGSLLIQNLTKEDSGTYTLQIIST 79 (92)
T ss_pred CCcEEEEcccCC-CCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCCceEEEccCCchhcEEEEEEEEcC
Confidence 789999996544 45567999985421 11 00 5589999999999999999999876
Q ss_pred CCCe-EEEEEEE
Q psy14542 82 DDSA-QMSAQVI 92 (371)
Q Consensus 82 ~~~~-~~~~~l~ 92 (371)
.+.. ...+.|.
T Consensus 80 ~~~~~~~~~~l~ 91 (92)
T cd05741 80 NGVTENAKFFLR 91 (92)
T ss_pred CCcEEEEEEEEE
Confidence 5433 3444443
No 245
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=98.70 E-value=1.6e-07 Score=69.88 Aligned_cols=74 Identities=14% Similarity=0.281 Sum_probs=57.6
Q ss_pred EEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC----------------------CeeEEEEccCCcCCCeEEEEEE
Q psy14542 21 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN----------------------SDEVLVLDRVQREDAGMYQCHV 78 (371)
Q Consensus 21 ~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~----------------------~~~~l~i~~~~~~d~G~Y~C~~ 78 (371)
+.|.+|++++|.|....+.....+.|+|..+.+..- ...+|.|.+++.+|+|.|.|..
T Consensus 25 v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C~F 104 (189)
T PHA02987 25 ITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTCIF 104 (189)
T ss_pred EEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEEEE
Confidence 678999999999976545556789999863322110 5578999999999999999998
Q ss_pred E-cCCC-CeEEEEEEEEe
Q psy14542 79 S-ADDD-SAQMSAQVILG 94 (371)
Q Consensus 79 ~-~~~~-~~~~~~~l~v~ 94 (371)
. -+.| ..+.++.|+|.
T Consensus 105 ~tfp~G~~~~gt~CLtVt 122 (189)
T PHA02987 105 NTLLSKNNEKGVVCLNVT 122 (189)
T ss_pred EecCCCCCceeEEEEEEE
Confidence 7 3445 67889999998
No 246
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.70 E-value=1.3e-07 Score=62.79 Aligned_cols=65 Identities=17% Similarity=0.374 Sum_probs=47.3
Q ss_pred cEEEEEEecCCCCCCeeEEEeCCEEEeeC--------------CeeEEEEccCCcCCCeEEEEEEEcCCCCe--EEEEEE
Q psy14542 28 RIELHCRVSPKRLSSAKAWLKDGLVLRRN--------------SDEVLVLDRVQREDAGMYQCHVSADDDSA--QMSAQV 91 (371)
Q Consensus 28 ~v~l~C~~~~~~~~~~~~W~~~~~~~~~~--------------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~--~~~~~l 91 (371)
++.|.|.+..+.|.+.+.|+++|+.+... ..+.|.|.....+|.|.|+|.+.+..... ..++.|
T Consensus 1 ~~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~~~~s~~l 80 (82)
T cd05759 1 PYNLTCRARGAKPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPTGKETSVTL 80 (82)
T ss_pred CEEEEEEEeCccCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCCCcEEEEEE
Confidence 46899977666788899999999876533 12367787777788899999999876443 344444
Q ss_pred E
Q psy14542 92 I 92 (371)
Q Consensus 92 ~ 92 (371)
.
T Consensus 81 ~ 81 (82)
T cd05759 81 D 81 (82)
T ss_pred c
Confidence 3
No 247
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.70 E-value=2e-07 Score=65.26 Aligned_cols=70 Identities=20% Similarity=0.339 Sum_probs=51.9
Q ss_pred ccCcEEEEEEecCCCC-----------CCeeEEEeC--CE---EEee---------C--------------CeeEEEEcc
Q psy14542 25 VGHRIELHCRVSPKRL-----------SSAKAWLKD--GL---VLRR---------N--------------SDEVLVLDR 65 (371)
Q Consensus 25 ~G~~v~l~C~~~~~~~-----------~~~~~W~~~--~~---~~~~---------~--------------~~~~l~i~~ 65 (371)
.|++++|+|......+ ...|.|+|- +. .+.. . .+.+|.|.+
T Consensus 1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n 80 (112)
T cd05900 1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE 80 (112)
T ss_pred CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence 4899999997764321 357999983 11 1100 0 467999999
Q ss_pred CCcCCCeEEEEEEEcCCCCeEEEEEEEEe
Q psy14542 66 VQREDAGMYQCHVSADDDSAQMSAQVILG 94 (371)
Q Consensus 66 ~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~ 94 (371)
++.+|+|.|+|.+.......+..+.|.|.
T Consensus 81 l~~sDsG~Y~C~V~~g~~~~~~~v~l~v~ 109 (112)
T cd05900 81 LRSNDSGTYRCEVMHGIEDNYDTVEVQVK 109 (112)
T ss_pred cccccCEEEEEEEecCCCCceeEEEEEEE
Confidence 99999999999999776677777888776
No 248
>PHA03270 envelope glycoprotein C; Provisional
Probab=98.69 E-value=3.5e-05 Score=64.83 Aligned_cols=205 Identities=14% Similarity=0.139 Sum_probs=115.3
Q ss_pred eEEEEccCCcCCCeEEEEEEEcCCCCe--EEEEEEEEecceeeEecCCceeeecCCcEEEEEEecCCCC--CceEEEeeC
Q psy14542 59 EVLVLDRVQREDAGMYQCHVSADDDSA--QMSAQVILGGELVEIASSNQVVVDVGHRIELHCRVSPKRL--SSAKAWLKD 134 (371)
Q Consensus 59 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~--~~~~~l~v~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~--~~~v~W~~~ 134 (371)
..|.|..++...+|.|+-...+..+.. .+.+.|..+ .+|.+...+. .+.+|+...-.|.+..+.+ ...++|++|
T Consensus 182 ~~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~y-r~Psvsv~~~-PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf~n 259 (466)
T PHA03270 182 QRLVIQELTLATQGMYYWARGPADRPHRYGTWTRVRMF-RRPSLSIRPH-AVLEGEPFGATCVAANYYPGDRAAFRWFEG 259 (466)
T ss_pred ceEEEEEcccccceEEEEEEecCCCceeeeeEEEEEEe-cCCcccccCC-ccccCCCceEEEEeeeecCCCceEEEEEeC
Confidence 459999999999999999987766543 345666666 5555554433 3368999999999987644 368999999
Q ss_pred CEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeecccccee--eeeeccceee
Q psy14542 135 GLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGAS--LLSVNRGRLS 212 (371)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~--~~~~~~~~l~ 212 (371)
+..+...+..... ..... ++ ++ ..+.+++.+.......-..+|.+.-. .... ....+...-.
T Consensus 260 g~~V~~~~~i~~~---~~~~~---------dG-fs--~vStvtsea~~~~~~PPsLrC~v~W~-rd~vS~sR~nAa~~P~ 323 (466)
T PHA03270 260 GDEVFAPERVRTR---VDAQR---------DG-FS--ATSTLTSEARAGLAPPRNLTCEFTWH-RDSVSFSRRNATGAPT 323 (466)
T ss_pred CccccCcceeeee---eEecC---------CC-ee--EEEEEeccccccCCCCCCceEEEEEc-cCCccceeecccccCc
Confidence 9987543211100 00001 11 11 11445554433222134789998765 2222 1122222334
Q ss_pred eecchhccccceeeeeeeeeeeecCCeEEEEEEeecCCC-CceEEEeCCcccccCCceEE------ecceEEEeccC--C
Q psy14542 213 LTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPL-PTIKWYKQDSPVEESDRIQR------IGSSLSISHVE--E 283 (371)
Q Consensus 213 v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~-~~v~W~~~~~~~~~~~~~~~------~~~~l~i~~~~--~ 283 (371)
|. .+|.+........ ..|.+.--|. ..+.|+.++........... .-+..+|.+.. .
T Consensus 324 VY-----~~P~Isv~F~dG~---------AVCtA~CVPegV~l~W~V~D~~~pa~~~~v~~G~C~~~PGlvNlrS~~plS 389 (466)
T PHA03270 324 VL-----PRPTIEMEFGGDE---------AVCTAACVPEGVTLAWLLGADPAPAEKAAVAGGPCPGRPGLARVRSALPLS 389 (466)
T ss_pred cc-----cCCeEEEEEeCCE---------EEEeccccCCCCEEEEEecCCCCCCccceeecccCCCCCCceeeecccccc
Confidence 44 6666665443332 2366654443 57999987765543322111 11223333221 1
Q ss_pred CCCeEEEEEEEc
Q psy14542 284 SDSGVWNCVANN 295 (371)
Q Consensus 284 ~d~G~Y~C~a~n 295 (371)
++..+|+|++..
T Consensus 390 d~~~eYTCrl~G 401 (466)
T PHA03270 390 REHSEYTCRLVG 401 (466)
T ss_pred cCCceEEEEEee
Confidence 124699999863
No 249
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=98.67 E-value=2e-07 Score=63.74 Aligned_cols=38 Identities=21% Similarity=0.450 Sum_probs=33.7
Q ss_pred CeeEEEEccCCcCCCeEEEEEEEc-CCCCeEEEEEEEEe
Q psy14542 57 SDEVLVLDRVQREDAGMYQCHVSA-DDDSAQMSAQVILG 94 (371)
Q Consensus 57 ~~~~l~i~~~~~~d~G~Y~C~~~~-~~~~~~~~~~l~v~ 94 (371)
.+.+|.|.+++.+|+|.|+|.+.+ +.|..+..+.|.|+
T Consensus 61 ~daSi~i~nl~~~D~G~Y~C~v~t~P~g~~~~~~~L~V~ 99 (99)
T cd05886 61 EDGTISLSRLELEDEGVYICEFATFPTGNRESQLNLTVY 99 (99)
T ss_pred CcceEEEcCCccccCEEEEEEEEeCCCCCeEEEEEEEEC
Confidence 558999999999999999999998 67778888888874
No 250
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.65 E-value=1e-07 Score=67.38 Aligned_cols=65 Identities=22% Similarity=0.359 Sum_probs=49.1
Q ss_pred eCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCE---E-------------------Eee---CCeeEEEEccCCcCC
Q psy14542 16 SPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGL---V-------------------LRR---NSDEVLVLDRVQRED 70 (371)
Q Consensus 16 ~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~---~-------------------~~~---~~~~~l~i~~~~~~d 70 (371)
.|.. +.+.+|++++|.|.+... +...+.|+|... . +.. ....+|.|.+++.+|
T Consensus 4 ~~~~-v~~~~G~~v~L~C~~~~~-~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~D 81 (109)
T cd04983 4 SPQS-LSVQEGENVTLNCNYSTS-TFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSD 81 (109)
T ss_pred cCCc-eEEcCCCCEEEEEEECCC-CccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHH
Confidence 3445 889999999999976644 677899998421 0 000 046789999999999
Q ss_pred CeEEEEEEEcCC
Q psy14542 71 AGMYQCHVSADD 82 (371)
Q Consensus 71 ~G~Y~C~~~~~~ 82 (371)
+|.|.|.+.+..
T Consensus 82 sG~Y~C~~~~~~ 93 (109)
T cd04983 82 SAVYFCALSESG 93 (109)
T ss_pred CEEEEEEEecCC
Confidence 999999998653
No 251
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=98.65 E-value=1.4e-07 Score=66.90 Aligned_cols=72 Identities=21% Similarity=0.326 Sum_probs=49.4
Q ss_pred EEEeccCcEEEEEEecCCCC---CCeeEEEeC----CEE--Ee-eC-----------------------CeeEEEEccCC
Q psy14542 21 VVVDVGHRIELHCRVSPKRL---SSAKAWLKD----GLV--LR-RN-----------------------SDEVLVLDRVQ 67 (371)
Q Consensus 21 ~~~~~G~~v~l~C~~~~~~~---~~~~~W~~~----~~~--~~-~~-----------------------~~~~l~i~~~~ 67 (371)
+.+.+|++++|.|......+ ...+.|++. +.. +. .. .+.+|.|.+++
T Consensus 8 v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~~v~ 87 (115)
T cd05880 8 VEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIWQLQ 87 (115)
T ss_pred EEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEeeCC
Confidence 78999999999997654332 246999741 111 10 00 35679999999
Q ss_pred cCCCeEEEEEEEcCCCC--eEEEEEEE
Q psy14542 68 REDAGMYQCHVSADDDS--AQMSAQVI 92 (371)
Q Consensus 68 ~~d~G~Y~C~~~~~~~~--~~~~~~l~ 92 (371)
.+|+|.|.|.+.+..+. ....+.|+
T Consensus 88 ~~D~G~Y~C~v~~~~~~~~~~~~~~~~ 114 (115)
T cd05880 88 PTDNGTYTCQVKNPPDVHGPIGEIRLR 114 (115)
T ss_pred hhhCEEEEEEEEeCCCCCCCccEEEEe
Confidence 99999999999976542 23444444
No 252
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.63 E-value=3.8e-07 Score=59.30 Aligned_cols=71 Identities=20% Similarity=0.408 Sum_probs=51.8
Q ss_pred EEEEEEeec-CCCCceEEEeCCcccccCCce-------EEecceEEEeccCCCCCeEEEEEEEcCCCC-ceeEEEEEEec
Q psy14542 240 VILPCSAQG-NPLPTIKWYKQDSPVEESDRI-------QRIGSSLSISHVEESDSGVWNCVANNSEGQ-DKMQLFIQYAH 310 (371)
Q Consensus 240 ~~l~C~~~~-~p~~~v~W~~~~~~~~~~~~~-------~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~-~~~~~~l~v~~ 310 (371)
+.|+|.+.| .|.+.|+|++++..+...... ....++|.|..-..+|+..|+|+|.|..-. ......|.|.+
T Consensus 2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~V~y 81 (82)
T cd05883 2 IELNCTAMASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYLEVQY 81 (82)
T ss_pred EEEEEEecCCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccCCceeeEEEEEEE
Confidence 679999876 788899999999888654221 123357888888888888999999997543 34555566643
No 253
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=98.63 E-value=2e-07 Score=66.47 Aligned_cols=66 Identities=26% Similarity=0.468 Sum_probs=47.4
Q ss_pred CCCcEEEeccCcEEEEEEecCCCC---CCeeEEEeC----C--EEEe-----------eC--------------CeeEEE
Q psy14542 17 PSGQVVVDVGHRIELHCRVSPKRL---SSAKAWLKD----G--LVLR-----------RN--------------SDEVLV 62 (371)
Q Consensus 17 p~~~~~~~~G~~v~l~C~~~~~~~---~~~~~W~~~----~--~~~~-----------~~--------------~~~~l~ 62 (371)
|.. +.+.+|++++|.|......+ ...+.|++. + ..+. .. .+.+|.
T Consensus 5 p~~-v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~ 83 (116)
T cd05715 5 PRE-VYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIV 83 (116)
T ss_pred CCe-EEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEE
Confidence 445 78999999999997754432 246999762 1 0110 00 247899
Q ss_pred EccCCcCCCeEEEEEEEcCCC
Q psy14542 63 LDRVQREDAGMYQCHVSADDD 83 (371)
Q Consensus 63 i~~~~~~d~G~Y~C~~~~~~~ 83 (371)
|.+++.+|+|.|.|.+.+...
T Consensus 84 I~~v~~~D~G~Y~C~v~~~~~ 104 (116)
T cd05715 84 IHNLQFTDNGTYTCDVKNPPD 104 (116)
T ss_pred EeeCCcccCEEEEEEEEeCCC
Confidence 999999999999999997654
No 254
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=98.63 E-value=3.6e-07 Score=62.00 Aligned_cols=70 Identities=27% Similarity=0.433 Sum_probs=53.1
Q ss_pred eEEEeCCCcEEEeccCcEEEEEEecCCCCCCe--eEEEeCCEEEeeC-----------CeeEEEEccCCcCCCe-EEEEE
Q psy14542 12 SIEMSPSGQVVVDVGHRIELHCRVSPKRLSSA--KAWLKDGLVLRRN-----------SDEVLVLDRVQREDAG-MYQCH 77 (371)
Q Consensus 12 ~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~--~~W~~~~~~~~~~-----------~~~~l~i~~~~~~d~G-~Y~C~ 77 (371)
+|.+.+.. ..+.+|+.++|.|.+..+.|... +.|||++..+... ...+|.+. +..+|.| .|+|+
T Consensus 3 ~V~l~~~p-~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~-~~r~D~g~~~sC~ 80 (100)
T cd05755 3 SVELSPLP-SWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITIT-VDREDHGANFSCE 80 (100)
T ss_pred eEEEecCC-CcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEEe-cchhhCCcEEEEE
Confidence 35555555 56899999999999988899887 7999999887653 24556665 4566666 99999
Q ss_pred EEcCCC
Q psy14542 78 VSADDD 83 (371)
Q Consensus 78 ~~~~~~ 83 (371)
+.++.+
T Consensus 81 A~l~l~ 86 (100)
T cd05755 81 TELDLR 86 (100)
T ss_pred EEeccC
Confidence 987654
No 255
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=98.62 E-value=4.9e-07 Score=61.06 Aligned_cols=62 Identities=24% Similarity=0.378 Sum_probs=47.6
Q ss_pred eecCCeEEEEEEeecCCCCceEEEeCCccc--------ccCCceEEe-----cceEEEeccCCCCCeEEEEEEEc
Q psy14542 234 VKKDESVILPCSAQGNPLPTIKWYKQDSPV--------EESDRIQRI-----GSSLSISHVEESDSGVWNCVANN 295 (371)
Q Consensus 234 ~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~--------~~~~~~~~~-----~~~l~i~~~~~~d~G~Y~C~a~n 295 (371)
+.+|+++.|.|.+.+.....+.|++.+..+ ....|+... .-+|.|.+++.+|+|.|.|.+..
T Consensus 9 v~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t 83 (95)
T cd05881 9 VVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYT 83 (95)
T ss_pred EcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEc
Confidence 889999999999988766678887665432 234555522 22599999999999999999975
No 256
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.62 E-value=4.7e-07 Score=63.54 Aligned_cols=75 Identities=23% Similarity=0.394 Sum_probs=54.9
Q ss_pred cCCeEEEEEEeecCC------CCceEEEeCCcc--------cc----------cCCceEEe-----cceEEEeccCCCCC
Q psy14542 236 KDESVILPCSAQGNP------LPTIKWYKQDSP--------VE----------ESDRIQRI-----GSSLSISHVEESDS 286 (371)
Q Consensus 236 ~g~~~~l~C~~~~~p------~~~v~W~~~~~~--------~~----------~~~~~~~~-----~~~l~i~~~~~~d~ 286 (371)
.|++++|.|.....| ...+.|++.... +. ...|+... ..+|.|.+++.+|+
T Consensus 1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds 80 (106)
T cd05877 1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY 80 (106)
T ss_pred CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence 488999999987553 346999985311 00 01233321 24799999999999
Q ss_pred eEEEEEEEcCCCCceeEEEEEEec
Q psy14542 287 GVWNCVANNSEGQDKMQLFIQYAH 310 (371)
Q Consensus 287 G~Y~C~a~n~~g~~~~~~~l~v~~ 310 (371)
|.|.|.+.+..+.....+.|.|..
T Consensus 81 G~Y~C~v~~~~~~~~~~~~l~v~~ 104 (106)
T cd05877 81 GRYRCEVIDGLEDESVVVALRLRG 104 (106)
T ss_pred EEEEEEEEecccceEEEEEEEEEE
Confidence 999999999988888888888863
No 257
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=98.61 E-value=2.5e-07 Score=63.14 Aligned_cols=79 Identities=15% Similarity=0.226 Sum_probs=51.3
Q ss_pred CCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCcccee
Q psy14542 111 GHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSY 190 (371)
Q Consensus 111 g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y 190 (371)
|++|+|.|....... ..+.|++.........- ............+ ...++..+..+.+|.|.+++.+| +|.|
T Consensus 1 G~~VtL~c~~~~~~~-~~i~W~~~~~~~~~~~i-~~~~~~~~~~~~~-----~~~~R~~~~~~~sL~I~~l~~~D-sG~Y 72 (92)
T cd05741 1 GESVTLPVSNLPENL-QEITWYKGKDKSVEAEI-ASYIATNSTVFGP-----AYSGRETIYPNGSLLIQNLTKED-SGTY 72 (92)
T ss_pred CCcEEEEcccCCCCC-EEEEEECCCCCCcceEE-EEEecCCceeECC-----CcCCeEEEcCCceEEEccCCchh-cEEE
Confidence 789999999876444 79999997643221100 0000000000011 12456777777899999999999 9999
Q ss_pred EEEeecc
Q psy14542 191 QCRGVNK 197 (371)
Q Consensus 191 ~C~~~~~ 197 (371)
+|.+...
T Consensus 73 ~c~v~~~ 79 (92)
T cd05741 73 TLQIIST 79 (92)
T ss_pred EEEEEcC
Confidence 9999887
No 258
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=98.60 E-value=4.3e-07 Score=62.75 Aligned_cols=68 Identities=16% Similarity=0.331 Sum_probs=49.4
Q ss_pred CcEEEEEEecCCC--CCCeeEEEeCCE----EE-----------eeC------------CeeEEEEccCCcCCCeEEEEE
Q psy14542 27 HRIELHCRVSPKR--LSSAKAWLKDGL----VL-----------RRN------------SDEVLVLDRVQREDAGMYQCH 77 (371)
Q Consensus 27 ~~v~l~C~~~~~~--~~~~~~W~~~~~----~~-----------~~~------------~~~~l~i~~~~~~d~G~Y~C~ 77 (371)
++|+|.|...... ....+.|+|... .+ ... .+.+|.|.+++.+|+|.|.|.
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~ 80 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICE 80 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEE
Confidence 5789999765543 344699999432 10 000 357999999999999999999
Q ss_pred EEc-CCCCeEEEEEEEEe
Q psy14542 78 VSA-DDDSAQMSAQVILG 94 (371)
Q Consensus 78 ~~~-~~~~~~~~~~l~v~ 94 (371)
+.. +.|...+.+.|.|.
T Consensus 81 v~~~~~g~~~~~~~l~V~ 98 (98)
T cd05718 81 FATFPQGNRQKVTTLTVL 98 (98)
T ss_pred EEeCCCCcEEEEEEEEeC
Confidence 874 66778888888773
No 259
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=98.60 E-value=2.3e-07 Score=66.22 Aligned_cols=68 Identities=26% Similarity=0.480 Sum_probs=50.3
Q ss_pred EEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCE-----EEe-e-C-----------------------CeeEEE
Q psy14542 13 IEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGL-----VLR-R-N-----------------------SDEVLV 62 (371)
Q Consensus 13 ~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~-----~~~-~-~-----------------------~~~~l~ 62 (371)
++..|.. +.+.+|+++.|.|..........+.|++... .+. . . ...+|.
T Consensus 4 vt~~~~~-v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~ 82 (114)
T PF07686_consen 4 VTQPPSP-VTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLT 82 (114)
T ss_dssp EEEEESE-EEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEE
T ss_pred EEEeCCe-EEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEE
Confidence 4454555 8999999999999766233456799998211 222 0 0 457899
Q ss_pred EccCCcCCCeEEEEEEEcC
Q psy14542 63 LDRVQREDAGMYQCHVSAD 81 (371)
Q Consensus 63 i~~~~~~d~G~Y~C~~~~~ 81 (371)
|.+++.+|+|.|.|.+...
T Consensus 83 i~~l~~~DsG~Y~C~v~~~ 101 (114)
T PF07686_consen 83 IKNLQPSDSGTYFCQVSTS 101 (114)
T ss_dssp ESSESGGGEEEEEEEEEES
T ss_pred ECCCCcCcCEEEEEEEEEC
Confidence 9999999999999999876
No 260
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=98.60 E-value=3.4e-07 Score=61.97 Aligned_cols=68 Identities=24% Similarity=0.409 Sum_probs=50.1
Q ss_pred CcEEEEEEecCCCCCCeeEEEeCC----EEEee-----------C------------CeeEEEEccCCcCCCeEEEEEEE
Q psy14542 27 HRIELHCRVSPKRLSSAKAWLKDG----LVLRR-----------N------------SDEVLVLDRVQREDAGMYQCHVS 79 (371)
Q Consensus 27 ~~v~l~C~~~~~~~~~~~~W~~~~----~~~~~-----------~------------~~~~l~i~~~~~~d~G~Y~C~~~ 79 (371)
++++|+|..........+.|.|.. ..+.. . .+.+|.|.+++.+|+|.|+|.+.
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v~ 80 (96)
T cd05887 1 KNVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDIGVYICKAV 80 (96)
T ss_pred CCEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCccccEEEEEEEE
Confidence 468999976654455679998731 11110 0 46799999999999999999976
Q ss_pred -cCCCCeEEEEEEEEe
Q psy14542 80 -ADDDSAQMSAQVILG 94 (371)
Q Consensus 80 -~~~~~~~~~~~l~v~ 94 (371)
.+.|..++.+.|.|.
T Consensus 81 tfP~G~~~~~~~l~~~ 96 (96)
T cd05887 81 TFPLGNTQSSTTVTVL 96 (96)
T ss_pred eCCCCCeeEEEEEEEC
Confidence 567888888888763
No 261
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=98.60 E-value=5.1e-07 Score=62.93 Aligned_cols=69 Identities=20% Similarity=0.288 Sum_probs=50.7
Q ss_pred cCcEEEEEEecCC------CCCCeeEEEeC-----CEEEe--e----------C--------------CeeEEEEccCCc
Q psy14542 26 GHRIELHCRVSPK------RLSSAKAWLKD-----GLVLR--R----------N--------------SDEVLVLDRVQR 68 (371)
Q Consensus 26 G~~v~l~C~~~~~------~~~~~~~W~~~-----~~~~~--~----------~--------------~~~~l~i~~~~~ 68 (371)
|++++|+|..... ...+.+.|.|. ...+. . . .+.+|.|.+++.
T Consensus 2 ~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~~ 81 (110)
T cd05902 2 SSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLRY 81 (110)
T ss_pred CCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCCH
Confidence 7899999975421 12467999874 11110 0 0 467999999999
Q ss_pred CCCeEEEEEEEcCCCCeEEEEEEEEe
Q psy14542 69 EDAGMYQCHVSADDDSAQMSAQVILG 94 (371)
Q Consensus 69 ~d~G~Y~C~~~~~~~~~~~~~~l~v~ 94 (371)
+|+|.|.|.+.......+..+.|.|.
T Consensus 82 ~D~G~Y~C~v~~g~~~~~~~v~L~V~ 107 (110)
T cd05902 82 SDSGTYRCEVVLGINDEQDTVPLEVT 107 (110)
T ss_pred HHCEEEEEEEEECCcccEEEEEEEEE
Confidence 99999999999876667888888876
No 262
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.60 E-value=2.2e-07 Score=65.65 Aligned_cols=65 Identities=20% Similarity=0.455 Sum_probs=48.5
Q ss_pred EeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCE---E--E----------e----eC---------CeeEEEEccC
Q psy14542 15 MSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGL---V--L----------R----RN---------SDEVLVLDRV 66 (371)
Q Consensus 15 ~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~---~--~----------~----~~---------~~~~l~i~~~ 66 (371)
..|.. +.+.+|++++|.|.... +...+.|||... . + . .. ...+|.|.++
T Consensus 3 Q~p~~-~~v~~G~~v~l~C~~~~--~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~ 79 (110)
T cd05899 3 QSPRY-LIKGRGQSVTLRCSQTS--GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSA 79 (110)
T ss_pred ECCCc-eEEcCCCcEEEEEEECC--CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCC
Confidence 44555 89999999999996654 567899998421 0 0 0 00 3568999999
Q ss_pred CcCCCeEEEEEEEcCC
Q psy14542 67 QREDAGMYQCHVSADD 82 (371)
Q Consensus 67 ~~~d~G~Y~C~~~~~~ 82 (371)
+.+|+|.|.|.+....
T Consensus 80 ~~~Dsg~Y~Ca~~~~~ 95 (110)
T cd05899 80 EPEDSAVYLCASSLGG 95 (110)
T ss_pred ChhhCEEEEEEeeCCC
Confidence 9999999999997643
No 263
>PHA03269 envelope glycoprotein C; Provisional
Probab=98.59 E-value=1.1e-05 Score=68.78 Aligned_cols=207 Identities=16% Similarity=0.176 Sum_probs=118.3
Q ss_pred CeeEEEEccCCcCCCeEEEEEEEcCCC-C--eEEEEEEEEecceeeEecCCceeeecCCcEEEEEEecCCCC--CceEEE
Q psy14542 57 SDEVLVLDRVQREDAGMYQCHVSADDD-S--AQMSAQVILGGELVEIASSNQVVVDVGHRIELHCRVSPKRL--SSAKAW 131 (371)
Q Consensus 57 ~~~~l~i~~~~~~d~G~Y~C~~~~~~~-~--~~~~~~l~v~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~--~~~v~W 131 (371)
....|.|.+++..++|.|.-++.+... . ....+.|.++ .+|.+...+. .+.+|+...-.|.+..+.+ +..++|
T Consensus 287 ~~~pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~y-r~PsVsV~p~-PVL~Ge~YkAtC~vA~YYPp~SvrlrW 364 (566)
T PHA03269 287 SDFSLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSY-KRPNITVIGD-PVLLGNPYAAYCKVNKYYPPHSVIVKW 364 (566)
T ss_pred CccceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEe-cCCCccccCC-ccccCCCceEEEEeeeecCCCceEEEE
Confidence 556799999999999999877654332 2 3456777777 5555554433 3468999999999987643 368999
Q ss_pred eeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCC-ccceeEEEeeccccceeeee--ecc
Q psy14542 132 LKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESD-RYRSYQCRGVNKLTGASLLS--VNR 208 (371)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d-~~g~y~C~~~~~~~~~~~~~--~~~ 208 (371)
++|+..+.... ..+......+| .++. .+.|++......| ..-..+|.+.-. .+....+ .+.
T Consensus 365 f~ng~~V~~~~----it~t~~~~~dG---------lFSr--VSTLtlp~~~~~d~~PPsLrCeV~W~-RDsVS~tRfnAa 428 (566)
T PHA03269 365 TSNFGNIGKNF----ITDAIKENADG---------LFSS--VSALHIPAQKNADYPPPAIQCNVLWI-RDGVSHMKYSAA 428 (566)
T ss_pred EeCCcccCccc----cccceeecCCC---------ceEE--EEEEeccCccccCCCCCCceEEEEEc-cCCchheecccc
Confidence 99988877421 11111111222 2222 2455553322222 134679998765 2222221 122
Q ss_pred ceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecCCC--CceEEEeCCcccccCCceE-----EecceEEEecc
Q psy14542 209 GRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPL--PTIKWYKQDSPVEESDRIQ-----RIGSSLSISHV 281 (371)
Q Consensus 209 ~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~--~~v~W~~~~~~~~~~~~~~-----~~~~~l~i~~~ 281 (371)
..-.|. .+|.+........ ..|.+.--|. ..+.|+.++.......... ...+...|.+.
T Consensus 429 atP~VY-----~~PtISm~FedG~---------AVCtA~CVP~~~V~l~WlVgD~p~~~~~t~itG~C~ehPGLVNLRS~ 494 (566)
T PHA03269 429 VTPDVY-----PFPNVSIEIIDGH---------IVCLAKCVPRGVVHFNWWINDIPIEHENSEILGVCDNNKRFVNLQSS 494 (566)
T ss_pred cCCccc-----cCCeEEEEEeCCE---------EEEecccccCCCceEEEEecCCCCCCccceeeccCCCCCCceeeccc
Confidence 233444 5666665443332 3477765554 5799998776644332222 12234566553
Q ss_pred ---CCCC-CeEEEEEEEc
Q psy14542 282 ---EESD-SGVWNCVANN 295 (371)
Q Consensus 282 ---~~~d-~G~Y~C~a~n 295 (371)
..+| --+|+|++..
T Consensus 495 ~pLS~~dgpveYTCrL~G 512 (566)
T PHA03269 495 CDTSELDGPITYSCHLDG 512 (566)
T ss_pred ccccccCCceeEEEEEee
Confidence 3332 2499999864
No 264
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.57 E-value=6.9e-07 Score=62.66 Aligned_cols=67 Identities=28% Similarity=0.493 Sum_probs=48.1
Q ss_pred EEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCC-----EEEee-----------C-------CeeEEEEccCCcC
Q psy14542 13 IEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDG-----LVLRR-----------N-------SDEVLVLDRVQRE 69 (371)
Q Consensus 13 ~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~-----~~~~~-----------~-------~~~~l~i~~~~~~ 69 (371)
+...|.. +.+.+|++++|.|..........+.|||.. ..+.. . ....|.|.+++.+
T Consensus 3 v~Q~p~~-~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~ 81 (106)
T cd04980 3 LTQSPAT-LSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPE 81 (106)
T ss_pred EEECCCc-EEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChH
Confidence 4455666 889999999999965433225679999731 11110 0 3457999999999
Q ss_pred CCeEEEEEEEc
Q psy14542 70 DAGMYQCHVSA 80 (371)
Q Consensus 70 d~G~Y~C~~~~ 80 (371)
|+|.|.|.+.+
T Consensus 82 Dsg~Y~Ca~~~ 92 (106)
T cd04980 82 DAAVYYCQQYG 92 (106)
T ss_pred HCEEEEEEEeC
Confidence 99999999865
No 265
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=98.57 E-value=7.8e-07 Score=62.39 Aligned_cols=75 Identities=25% Similarity=0.394 Sum_probs=54.5
Q ss_pred cCCeEEEEEEeecCC------CCceEEEeCC---cc---c--ccC----------CceEE-----ecceEEEeccCCCCC
Q psy14542 236 KDESVILPCSAQGNP------LPTIKWYKQD---SP---V--EES----------DRIQR-----IGSSLSISHVEESDS 286 (371)
Q Consensus 236 ~g~~~~l~C~~~~~p------~~~v~W~~~~---~~---~--~~~----------~~~~~-----~~~~l~i~~~~~~d~ 286 (371)
.|++++|.|.....+ ...+.|++.. .. + ..+ .++.. .+.+|.|.+++.+|+
T Consensus 1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~ 80 (106)
T cd05714 1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS 80 (106)
T ss_pred CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence 488999999987643 4579999862 10 0 011 11111 235799999999999
Q ss_pred eEEEEEEEcCCCCceeEEEEEEec
Q psy14542 287 GVWNCVANNSEGQDKMQLFIQYAH 310 (371)
Q Consensus 287 G~Y~C~a~n~~g~~~~~~~l~v~~ 310 (371)
|.|.|.+.+..+.....+.|.|..
T Consensus 81 G~Y~C~v~~~~~~~~~~v~L~V~~ 104 (106)
T cd05714 81 GRYRCEVIDGIEDEQDTVELEVRG 104 (106)
T ss_pred EEEEEEEEcCCCceEEEEEEEEEE
Confidence 999999999888888888888864
No 266
>PHA03273 envelope glycoprotein C; Provisional
Probab=98.55 E-value=2.3e-05 Score=66.56 Aligned_cols=205 Identities=16% Similarity=0.131 Sum_probs=116.2
Q ss_pred eEEEEccCCcCCCeEEEEEEEcCCCCeE--EEEEEEEecceeeEecCCceeeecCCcEEEEEEecCCCC--CceEEEeeC
Q psy14542 59 EVLVLDRVQREDAGMYQCHVSADDDSAQ--MSAQVILGGELVEIASSNQVVVDVGHRIELHCRVSPKRL--SSAKAWLKD 134 (371)
Q Consensus 59 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~~--~~~~l~v~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~--~~~v~W~~~ 134 (371)
..|.|..++..++|.|+-...+.++... ..+.|..+ .+|.+...+. .+.+|+...-.|.+..+.+ ...++|+++
T Consensus 198 ~~LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~y-r~Psvsv~~~-PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf~d 275 (486)
T PHA03273 198 FPLTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVSTY-NAPLVDLSVH-PSLKGENYRAVCVVASYFPHSSVKLRWYKN 275 (486)
T ss_pred cceEEEecchhhceEEEEEEecCCCceeeeeEEEEEEe-cCCcccccCC-ccccCCCceEEEEeeeecCCCceEEEEEeC
Confidence 4599999999999999877666555433 44555445 5555554433 3468999999999987643 368999999
Q ss_pred CEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeee--ccceee
Q psy14542 135 GLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSV--NRGRLS 212 (371)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~--~~~~l~ 212 (371)
+.++.......- ... ...++.+ ...+.|.+.+....+..-..+|.+.-. .+....+. +...-.
T Consensus 276 g~~V~~~~~~~~---~~~---------~~~~gl~--T~vStlt~~~~~~~~~PP~lrC~v~W~-rd~vS~~RfsAt~~P~ 340 (486)
T PHA03273 276 AKEVDFTKYVTN---ASS---------VWVDGLI--TRISTLSIPVDPDEEYTPSLRCSIEWY-RDEVSFARIAKAGTPS 340 (486)
T ss_pred Ceecccccccee---eEE---------EecCCce--EEEEEEeccCcccCCCCCCceEEEEEc-cCCcceeeccccccCc
Confidence 998772211000 000 0011221 222566666654433366899998865 22221111 122334
Q ss_pred eecchhccccceeeeeeeeeeeecCCeEEEEEEeecCCC--CceEEEeCCcc-cccCCceE-----EecceEEEecc---
Q psy14542 213 LTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPL--PTIKWYKQDSP-VEESDRIQ-----RIGSSLSISHV--- 281 (371)
Q Consensus 213 v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~--~~v~W~~~~~~-~~~~~~~~-----~~~~~l~i~~~--- 281 (371)
|. .+|.+........ ..|.+.--|. ..+.|+.++.. ........ ..-+...|...
T Consensus 341 Vy-----~~P~Is~~F~~G~---------AVCtA~CVP~egV~l~W~v~D~~p~a~~~~~~tG~C~~~PglvNlrS~~pl 406 (486)
T PHA03273 341 VF-----VAPTVSVTVEDGD---------AVCTAKCVPSTGVFVSWSVNDHLPGVPSQDMTTGVCSSHPGLVNMQSRRPL 406 (486)
T ss_pred cc-----cCCeEEEEEeCCE---------EEEecccccCCCeeEEEEccCCCCCCcccccccccCCCCCCceeeeccccc
Confidence 44 5666665443332 3477766655 67999877632 11111111 12234566553
Q ss_pred CCCCCe--EEEEEEEc
Q psy14542 282 EESDSG--VWNCVANN 295 (371)
Q Consensus 282 ~~~d~G--~Y~C~a~n 295 (371)
..+| | +|+|++..
T Consensus 407 s~~d-gp~eYTCrl~G 421 (486)
T PHA03273 407 SEEN-GEREYSCIIEG 421 (486)
T ss_pred cccC-CceeEEEEEee
Confidence 3333 5 99999864
No 267
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.55 E-value=1.2e-06 Score=61.28 Aligned_cols=74 Identities=26% Similarity=0.417 Sum_probs=53.3
Q ss_pred cCCeEEEEEEeecCC------------CCceEEEeCC--cc----------c----ccCCceEE-------ecceEEEec
Q psy14542 236 KDESVILPCSAQGNP------------LPTIKWYKQD--SP----------V----EESDRIQR-------IGSSLSISH 280 (371)
Q Consensus 236 ~g~~~~l~C~~~~~p------------~~~v~W~~~~--~~----------~----~~~~~~~~-------~~~~l~i~~ 280 (371)
.|++++|.|...... .+.|.|++-. .. + .-..|+.. .+.+|.|.+
T Consensus 1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n 80 (112)
T cd05900 1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE 80 (112)
T ss_pred CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence 388999999986432 3579999742 10 0 00123332 346899999
Q ss_pred cCCCCCeEEEEEEEcCCCCceeEEEEEEe
Q psy14542 281 VEESDSGVWNCVANNSEGQDKMQLFIQYA 309 (371)
Q Consensus 281 ~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 309 (371)
++.+|+|.|.|.+.+........+.|.|.
T Consensus 81 l~~sDsG~Y~C~V~~g~~~~~~~v~l~v~ 109 (112)
T cd05900 81 LRSNDSGTYRCEVMHGIEDNYDTVEVQVK 109 (112)
T ss_pred cccccCEEEEEEEecCCCCceeEEEEEEE
Confidence 99999999999999877777878877775
No 268
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.54 E-value=1.1e-06 Score=57.16 Aligned_cols=66 Identities=20% Similarity=0.293 Sum_probs=47.4
Q ss_pred EEEEEEecCCCCCCeeEEEeCCEEEeeC------------CeeEEEEccCCcCCCeEEEEEEEcCCCC-eEEEEEEEEe
Q psy14542 29 IELHCRVSPKRLSSAKAWLKDGLVLRRN------------SDEVLVLDRVQREDAGMYQCHVSADDDS-AQMSAQVILG 94 (371)
Q Consensus 29 v~l~C~~~~~~~~~~~~W~~~~~~~~~~------------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~-~~~~~~l~v~ 94 (371)
+.|.|...++.|.+.|.|++++.++... ..++|.|..-..+|...|+|++.+..-. ......|.|.
T Consensus 2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~V~ 80 (82)
T cd05883 2 IELNCTAMASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYLEVQ 80 (82)
T ss_pred EEEEEEecCCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccCCceeeEEEEEE
Confidence 6899988899999999999998776542 3356777655555555999999876532 3445555554
No 269
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=98.51 E-value=1.9e-06 Score=60.21 Aligned_cols=38 Identities=24% Similarity=0.467 Sum_probs=34.3
Q ss_pred CeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEEEEEEe
Q psy14542 57 SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVILG 94 (371)
Q Consensus 57 ~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~ 94 (371)
++.+|.|.+++.+|+|.|+|.+.......+..+.|.|.
T Consensus 77 g~asL~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~ 114 (117)
T cd05901 77 GDASLTIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVS 114 (117)
T ss_pred CceEEEEcccccccCEEEEEEEEECCcccEEEEEEEEE
Confidence 46899999999999999999999888778888888886
No 270
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=98.50 E-value=1.3e-06 Score=60.52 Aligned_cols=72 Identities=18% Similarity=0.347 Sum_probs=49.2
Q ss_pred CCeEEEEEEeecCC---CCceEEEeCCc-----------ccc------cCCceEE-------ecceEEEeccCCCCCeEE
Q psy14542 237 DESVILPCSAQGNP---LPTIKWYKQDS-----------PVE------ESDRIQR-------IGSSLSISHVEESDSGVW 289 (371)
Q Consensus 237 g~~~~l~C~~~~~p---~~~v~W~~~~~-----------~~~------~~~~~~~-------~~~~l~i~~~~~~d~G~Y 289 (371)
|++++|.|...... ...+.|++... ... ...|+.. ...+|.|.+++.+|+|.|
T Consensus 1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y 80 (100)
T cd05713 1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLY 80 (100)
T ss_pred CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEE
Confidence 67889999875321 13578877442 111 0123332 124799999999999999
Q ss_pred EEEEEcCCCCceeEEEEEE
Q psy14542 290 NCVANNSEGQDKMQLFIQY 308 (371)
Q Consensus 290 ~C~a~n~~g~~~~~~~l~v 308 (371)
+|.+.|..+.....+.|.|
T Consensus 81 ~C~v~~~~~~~~~~i~l~v 99 (100)
T cd05713 81 TCFFQSDGFYEEATVELKV 99 (100)
T ss_pred EEEEecCCcEEEEEEEEEE
Confidence 9999998887777777776
No 271
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=98.50 E-value=1.2e-06 Score=60.49 Aligned_cols=37 Identities=22% Similarity=0.443 Sum_probs=31.4
Q ss_pred CeeEEEEccCCcCCCeEEEEEEEc-CCCCeEEEEEEEE
Q psy14542 57 SDEVLVLDRVQREDAGMYQCHVSA-DDDSAQMSAQVIL 93 (371)
Q Consensus 57 ~~~~l~i~~~~~~d~G~Y~C~~~~-~~~~~~~~~~l~v 93 (371)
.+.+|.|.+++.+|+|.|.|.+.+ +.|..+..+.|.|
T Consensus 62 ~~~sL~I~nv~~sD~GtY~C~v~~~p~g~~~~~~~L~V 99 (100)
T cd05888 62 ADGALILRNAVQADEGKYKCRVITFPAGNFEAELVLTV 99 (100)
T ss_pred CceEEEEecCccccceEEEEEEEeCCCCCeeeEEEEEe
Confidence 467899999999999999999986 6666677787776
No 272
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=98.48 E-value=1.1e-06 Score=59.87 Aligned_cols=60 Identities=18% Similarity=0.364 Sum_probs=45.0
Q ss_pred eecCCeEEEEEEeecCCCCceEEEeCCcccccC---Cc-eEEecceEEEeccCCCCCeEEEEEEE
Q psy14542 234 VKKDESVILPCSAQGNPLPTIKWYKQDSPVEES---DR-IQRIGSSLSISHVEESDSGVWNCVAN 294 (371)
Q Consensus 234 ~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~---~~-~~~~~~~l~i~~~~~~d~G~Y~C~a~ 294 (371)
+..|++++|.|.... ....+.|+|+|...... .. .......+.|..++.+|+|.|.|...
T Consensus 12 V~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~ 75 (94)
T cd05711 12 VPSGENVTLQCHSDI-RFDRFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGS 75 (94)
T ss_pred cCCCCeEEEEEecCC-CCCEEEEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEEEEEEE
Confidence 889999999998764 44579999988753221 10 01234578999999999999999975
No 273
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.45 E-value=1.7e-06 Score=61.12 Aligned_cols=65 Identities=34% Similarity=0.516 Sum_probs=49.1
Q ss_pred eecCCeEEEEEEeecCCCCceEEEeCCcc--c------------ccCCceEE------ecceEEEeccCCCCCeEEEEEE
Q psy14542 234 VKKDESVILPCSAQGNPLPTIKWYKQDSP--V------------EESDRIQR------IGSSLSISHVEESDSGVWNCVA 293 (371)
Q Consensus 234 ~~~g~~~~l~C~~~~~p~~~v~W~~~~~~--~------------~~~~~~~~------~~~~l~i~~~~~~d~G~Y~C~a 293 (371)
+..|++++|.|.+.+.+...+.|++.... . ...+|+.. ....|.|.+++.+|+|.|.|.+
T Consensus 10 ~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~ 89 (109)
T cd04983 10 VQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDSAVYFCAL 89 (109)
T ss_pred EcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHCEEEEEEE
Confidence 89999999999998777788999985321 0 12234432 2347999999999999999999
Q ss_pred EcCCC
Q psy14542 294 NNSEG 298 (371)
Q Consensus 294 ~n~~g 298 (371)
.+..+
T Consensus 90 ~~~~~ 94 (109)
T cd04983 90 SESGG 94 (109)
T ss_pred ecCCC
Confidence 87643
No 274
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=98.44 E-value=1.2e-06 Score=59.49 Aligned_cols=67 Identities=10% Similarity=0.215 Sum_probs=49.7
Q ss_pred eecCCeEEEEEEeec-CCCCc--eEEEeCCcccccCCce------EEecceEEEeccCCCCCeEEEEEEEcCCCCc
Q psy14542 234 VKKDESVILPCSAQG-NPLPT--IKWYKQDSPVEESDRI------QRIGSSLSISHVEESDSGVWNCVANNSEGQD 300 (371)
Q Consensus 234 ~~~g~~~~l~C~~~~-~p~~~--v~W~~~~~~~~~~~~~------~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~ 300 (371)
+.+|+.++|+|.+.| .|.+. +.|++++..+...... .....+|.+...+.+|.-.|+|+|.+..+..
T Consensus 13 ~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~~~r~D~g~~~sC~A~l~l~~~ 88 (100)
T cd05755 13 QPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITITVDREDHGANFSCETELDLRPE 88 (100)
T ss_pred ccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEEecchhhCCcEEEEEEEeccCcc
Confidence 789999999999986 67776 7999999887553211 1223467777666666669999999877654
No 275
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.44 E-value=1.4e-06 Score=62.24 Aligned_cols=66 Identities=27% Similarity=0.432 Sum_probs=48.3
Q ss_pred EEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeC--CEE---Eee--------------------CCeeEEEEccCCc
Q psy14542 14 EMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKD--GLV---LRR--------------------NSDEVLVLDRVQR 68 (371)
Q Consensus 14 ~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~--~~~---~~~--------------------~~~~~l~i~~~~~ 68 (371)
...|.. +.+.+|++++|.|..........+.|+|. +.. +.. ....+|.|.+++.
T Consensus 3 ~q~~~~-v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~ 81 (116)
T cd07706 3 TQAQPD-VSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQL 81 (116)
T ss_pred EEeCCc-eEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCH
Confidence 445555 88999999999997654334567999982 111 100 0456899999999
Q ss_pred CCCeEEEEEEEc
Q psy14542 69 EDAGMYQCHVSA 80 (371)
Q Consensus 69 ~d~G~Y~C~~~~ 80 (371)
+|+|.|.|.+..
T Consensus 82 ~Dsg~Y~C~~~~ 93 (116)
T cd07706 82 EDSAKYFCALST 93 (116)
T ss_pred HHCEEEEEEEEC
Confidence 999999999984
No 276
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=98.44 E-value=2.3e-06 Score=59.07 Aligned_cols=71 Identities=23% Similarity=0.381 Sum_probs=50.1
Q ss_pred CeEEEEEEeecCC---CCceEEEeCCcc---------------ccc--CCceEE-----ecceEEEeccCCCCCeEEEEE
Q psy14542 238 ESVILPCSAQGNP---LPTIKWYKQDSP---------------VEE--SDRIQR-----IGSSLSISHVEESDSGVWNCV 292 (371)
Q Consensus 238 ~~~~l~C~~~~~p---~~~v~W~~~~~~---------------~~~--~~~~~~-----~~~~l~i~~~~~~d~G~Y~C~ 292 (371)
++++|.|.....+ ...+.|++.... ... ..|+.. .+.+|.|.+++.+|+|.|.|.
T Consensus 1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~ 80 (98)
T cd05718 1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICE 80 (98)
T ss_pred CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEE
Confidence 4689999987644 346999985431 001 122221 245899999999999999999
Q ss_pred EEc-CCCCceeEEEEEE
Q psy14542 293 ANN-SEGQDKMQLFIQY 308 (371)
Q Consensus 293 a~n-~~g~~~~~~~l~v 308 (371)
+.+ ..|.....+.|.|
T Consensus 81 v~~~~~g~~~~~~~l~V 97 (98)
T cd05718 81 FATFPQGNRQKVTTLTV 97 (98)
T ss_pred EEeCCCCcEEEEEEEEe
Confidence 875 6788888887776
No 277
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=98.42 E-value=3e-06 Score=59.87 Aligned_cols=67 Identities=22% Similarity=0.395 Sum_probs=47.5
Q ss_pred eecCCeEEEEEEeecCC----CCceEEEe---------------CCcccc-cC----CceE------EecceEEEeccCC
Q psy14542 234 VKKDESVILPCSAQGNP----LPTIKWYK---------------QDSPVE-ES----DRIQ------RIGSSLSISHVEE 283 (371)
Q Consensus 234 ~~~g~~~~l~C~~~~~p----~~~v~W~~---------------~~~~~~-~~----~~~~------~~~~~l~i~~~~~ 283 (371)
+..|+.+.|.|...... ...+.|.+ +|.... .. +|+. ..+.+|.|.+++.
T Consensus 10 a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I~nv~~ 89 (116)
T cd05879 10 GTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVIHNLDY 89 (116)
T ss_pred EEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEEccCCc
Confidence 88999999999986532 34799943 232221 11 2443 2335799999999
Q ss_pred CCCeEEEEEEEcCCCCc
Q psy14542 284 SDSGVWNCVANNSEGQD 300 (371)
Q Consensus 284 ~d~G~Y~C~a~n~~g~~ 300 (371)
+|.|.|+|.+.|.-+..
T Consensus 90 sD~G~Y~C~v~n~p~~~ 106 (116)
T cd05879 90 TDNGTFTCDVKNPPDIV 106 (116)
T ss_pred ccCEEEEEEEEcCCCcC
Confidence 99999999999876643
No 278
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=98.42 E-value=1.1e-06 Score=60.72 Aligned_cols=62 Identities=31% Similarity=0.561 Sum_probs=46.3
Q ss_pred EEEeccCcEEEEEEecCCCCCCeeEEEeCCE-----EEe-------e--C----------CeeEEEEccCCcCCCeEEEE
Q psy14542 21 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGL-----VLR-------R--N----------SDEVLVLDRVQREDAGMYQC 76 (371)
Q Consensus 21 ~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~-----~~~-------~--~----------~~~~l~i~~~~~~d~G~Y~C 76 (371)
+.+.+|++++|.|..........+.|+|... .+. . . ...+|.|.+++.+|+|.|.|
T Consensus 2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C 81 (98)
T cd05716 2 VTGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWC 81 (98)
T ss_pred EEEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEE
Confidence 5688999999999765444566799998421 110 0 0 45689999999999999999
Q ss_pred EEEcCC
Q psy14542 77 HVSADD 82 (371)
Q Consensus 77 ~~~~~~ 82 (371)
.+....
T Consensus 82 ~~~~~~ 87 (98)
T cd05716 82 GVGDDG 87 (98)
T ss_pred EcccCC
Confidence 997654
No 279
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.41 E-value=5.9e-07 Score=62.99 Aligned_cols=62 Identities=27% Similarity=0.395 Sum_probs=46.4
Q ss_pred EEeccCcEEEEEEecCCCCCCeeEEEeCCE-----EEee----------C-------------CeeEEEEccCCcCCCeE
Q psy14542 22 VVDVGHRIELHCRVSPKRLSSAKAWLKDGL-----VLRR----------N-------------SDEVLVLDRVQREDAGM 73 (371)
Q Consensus 22 ~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~-----~~~~----------~-------------~~~~l~i~~~~~~d~G~ 73 (371)
.+.+|++++|.|......+...+.|++... .+.. . ...+|.|.+++.+|+|.
T Consensus 2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~ 81 (105)
T cd00099 2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSAV 81 (105)
T ss_pred eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCEE
Confidence 578999999999766443567799998321 1110 0 35689999999999999
Q ss_pred EEEEEEcCCC
Q psy14542 74 YQCHVSADDD 83 (371)
Q Consensus 74 Y~C~~~~~~~ 83 (371)
|.|.+.+..+
T Consensus 82 Y~C~v~~~~~ 91 (105)
T cd00099 82 YYCAVSLSGG 91 (105)
T ss_pred EEEEEecCCC
Confidence 9999987554
No 280
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=98.41 E-value=2.3e-06 Score=60.12 Aligned_cols=75 Identities=32% Similarity=0.486 Sum_probs=53.6
Q ss_pred cCCeEEEEEEeecCC----------CCceEEEeCC--ccc--------------ccCCceEE-------ecceEEEeccC
Q psy14542 236 KDESVILPCSAQGNP----------LPTIKWYKQD--SPV--------------EESDRIQR-------IGSSLSISHVE 282 (371)
Q Consensus 236 ~g~~~~l~C~~~~~p----------~~~v~W~~~~--~~~--------------~~~~~~~~-------~~~~l~i~~~~ 282 (371)
.|++++|.|.....+ ...+.|++.. ... .-.+|+.. ...+|.|.+++
T Consensus 1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~ 80 (110)
T cd05878 1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR 80 (110)
T ss_pred CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence 378999999987533 2569999852 110 00123332 23579999999
Q ss_pred CCCCeEEEEEEEcCCCCceeEEEEEEec
Q psy14542 283 ESDSGVWNCVANNSEGQDKMQLFIQYAH 310 (371)
Q Consensus 283 ~~d~G~Y~C~a~n~~g~~~~~~~l~v~~ 310 (371)
.+|+|.|.|.+..........+.|.|..
T Consensus 81 ~sD~G~Y~C~v~~~~~~~~~~v~l~V~g 108 (110)
T cd05878 81 SSDSGVYRCEVMHGIEDEQDTVPLEVTG 108 (110)
T ss_pred hhhCEEEEEEEEeCCCcceEEEEEEEEE
Confidence 9999999999998777778888888764
No 281
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=98.40 E-value=2.2e-06 Score=58.93 Aligned_cols=91 Identities=15% Similarity=0.146 Sum_probs=50.4
Q ss_pred CCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEE-cccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccce
Q psy14542 111 GHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVL-DRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRS 189 (371)
Q Consensus 111 g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~-~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~ 189 (371)
|++++|.|..........+.|+|.... ........ ........+.|.-...-. .....+..|.|.+++.+| +|.
T Consensus 1 G~~vtL~C~~~~~~~~~~v~W~k~~~~---~~~~i~~~~~~~~~~~~~~~~~r~~~~-~~~~~~~sL~I~nv~~~D-~G~ 75 (97)
T cd05846 1 GGNVTLSCNLTLPEEVLQVTWQKIQGS---SPENIATYSEKYGVKIQPSYFRRRSIT-SLGLNSTSITIWNVTLED-EGC 75 (97)
T ss_pred CCcEEEEEEeCCCCeeEEEEEEEcCCC---CceEEEEEcccCCcccCCCccCeEEEc-CCCCCccEEEEeCCceee-eEE
Confidence 789999999765433247999884321 11111111 111111222222111100 011234689999999999 999
Q ss_pred eEEEeeccccceeeeee
Q psy14542 190 YQCRGVNKLTGASLLSV 206 (371)
Q Consensus 190 y~C~~~~~~~~~~~~~~ 206 (371)
|.|.+.....|......
T Consensus 76 Y~C~~~~~p~g~~~~~~ 92 (97)
T cd05846 76 YKCIFNTFPDGSKSGTM 92 (97)
T ss_pred EEEEEEeCCCCCeeeEE
Confidence 99999876455544444
No 282
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=98.38 E-value=1.3e-06 Score=59.90 Aligned_cols=64 Identities=23% Similarity=0.401 Sum_probs=47.8
Q ss_pred cCCeEEEEEEeecC-CC-CceEEEeCCcccccCCc-e--E-------EecceEEEeccCCCCCeEEEEEEEcCCCC
Q psy14542 236 KDESVILPCSAQGN-PL-PTIKWYKQDSPVEESDR-I--Q-------RIGSSLSISHVEESDSGVWNCVANNSEGQ 299 (371)
Q Consensus 236 ~g~~~~l~C~~~~~-p~-~~v~W~~~~~~~~~~~~-~--~-------~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~ 299 (371)
.|+.+.|.|.+.|+ |. +.++|+++|..+..... . . ...+.|.+......|.|.|+|+|.+....
T Consensus 12 ~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~~ 87 (95)
T cd00098 12 LGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESLP 87 (95)
T ss_pred cCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence 57899999999996 53 67999999988765542 1 1 11235667666677999999999987764
No 283
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=98.38 E-value=2.9e-06 Score=60.19 Aligned_cols=92 Identities=17% Similarity=0.261 Sum_probs=50.1
Q ss_pred CceeeecCCcEEEEEEecCCCC---CceEEEeeCCEEeeeCCeeEEEEcc-cCcCCCeeEEEEEeCCceeEeccceEEEE
Q psy14542 104 NQVVVDVGHRIELHCRVSPKRL---SSAKAWLKDGLVLRRNSDEVLVLDR-VQREDAGMYQCHIEDGKYHMLSSGELIIH 179 (371)
Q Consensus 104 ~~~~~~~g~~v~l~C~~~~~~~---~~~v~W~~~~~~~~~~~~~~~~~~~-~~~~~~g~y~~~~~~~~~~~~~~~~l~i~ 179 (371)
....+.+|++++|.|.+..... ...+.|++....- ......+.... ......+.|..+..-.......+.+|.|.
T Consensus 6 ~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~-~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~ 84 (115)
T cd05880 6 KEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDG-GREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIW 84 (115)
T ss_pred ceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCC-CceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEe
Confidence 3445589999999999864321 2469998621100 00111222211 11112333322111000001134679999
Q ss_pred EeecCCccceeEEEeecc
Q psy14542 180 QVDESDRYRSYQCRGVNK 197 (371)
Q Consensus 180 ~~~~~d~~g~y~C~~~~~ 197 (371)
+++.+| +|.|.|.+.+.
T Consensus 85 ~v~~~D-~G~Y~C~v~~~ 101 (115)
T cd05880 85 QLQPTD-NGTYTCQVKNP 101 (115)
T ss_pred eCChhh-CEEEEEEEEeC
Confidence 999999 99999999976
No 284
>PHA03271 envelope glycoprotein C; Provisional
Probab=98.35 E-value=0.00049 Score=57.81 Aligned_cols=210 Identities=11% Similarity=0.110 Sum_probs=114.0
Q ss_pred CeeEEEEccCCcCCCeEEEEEEEcCCCCe--EEEEEEEEecceeeEecCCceeeecCCcEEEEEEecCCCC--CceEEEe
Q psy14542 57 SDEVLVLDRVQREDAGMYQCHVSADDDSA--QMSAQVILGGELVEIASSNQVVVDVGHRIELHCRVSPKRL--SSAKAWL 132 (371)
Q Consensus 57 ~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~--~~~~~l~v~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~--~~~v~W~ 132 (371)
....|.|+++...|+|.|+-...+..... .+.+.+.+...+|.+...+.. +..|+...-.|.+..+.+ ...++|+
T Consensus 205 ~~m~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~~RPPsVsV~a~P-VL~Ge~YkAtC~vAnYYPP~SvrlrWf 283 (490)
T PHA03271 205 NTMGVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVCQRPASVDVLAPP-VLSGENYKASCIVRHFYPPGSVYVSWR 283 (490)
T ss_pred ceeeEEEEEeecccceEEEEEecCCCCCccccceEEEEEEecCCCccccCCc-cccCCCceEEEEeeeecCCCceEEEEE
Confidence 55689999999999997755555433332 344555555455555554433 368999999999987644 3689999
Q ss_pred eCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeeeccceee
Q psy14542 133 KDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLS 212 (371)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~ 212 (371)
++|......... .+.... .++......-+++.+.+...+. .-..+|.+.-..........+...-.
T Consensus 284 ~nG~~V~~~~~r-----------dt~~~w--~d~~~g~S~VSTltl~a~~~~~-PPsLRCeV~W~rd~v~s~rnAaatP~ 349 (490)
T PHA03271 284 QNGNIATPRKDR-----------DGSFWW--FESGRGATLVSTITLGNSGIDP-PPKISCLVAWKQGDMISTTNATAIPT 349 (490)
T ss_pred eCCccccCcccc-----------ceeEEE--ecCCCceeEEEEEEcccccCCC-CCCceEEEEEccCCceeeeecccCCc
Confidence 999877543210 000000 0001111111455554443333 56899998765121221112222334
Q ss_pred eecchhccccceeeeeeeeeeeecCCeEEEEEEeecCC-CCceEEEeCCcccccCCc---eE----EecceEEEec-cCC
Q psy14542 213 LTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNP-LPTIKWYKQDSPVEESDR---IQ----RIGSSLSISH-VEE 283 (371)
Q Consensus 213 v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p-~~~v~W~~~~~~~~~~~~---~~----~~~~~l~i~~-~~~ 283 (371)
|. .+|.+........ ..|.+.--| ...+.|+-++.+...... .. ...+...|.. ...
T Consensus 350 VY-----~~P~ISv~FedG~---------AVCtA~CVP~gV~lrWlVgD~p~pn~t~d~~itGvC~erPGlVNLrS~lPl 415 (490)
T PHA03271 350 VY-----HHPRISLAFKDGY---------AICTIECVPSGITVRWLVHDEPQPNTTYDTVVTGLCRTIDRHRNLISRIPV 415 (490)
T ss_pred cc-----cCCeEEEEEeCCE---------EEEeccccCCCcEEEEEecCCCCCCcccccccccccCCCCCceeeeccCCc
Confidence 44 5666665443332 236665444 357999987765432211 11 1223455554 233
Q ss_pred CC---CeEEEEEEEc
Q psy14542 284 SD---SGVWNCVANN 295 (371)
Q Consensus 284 ~d---~G~Y~C~a~n 295 (371)
+| --.|+|++..
T Consensus 416 Sd~dgpveYTCrL~G 430 (490)
T PHA03271 416 QDNWQKTKYTCRLIG 430 (490)
T ss_pred hhcCCceeEEEEEee
Confidence 33 2599999864
No 285
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=98.35 E-value=5.5e-06 Score=54.82 Aligned_cols=60 Identities=25% Similarity=0.428 Sum_probs=42.9
Q ss_pred EEEEEEeec-CCCCceEEEeCCcccccCCceE--E-e------cceEEEeccCCCCCeEEEEEEEcCCCC
Q psy14542 240 VILPCSAQG-NPLPTIKWYKQDSPVEESDRIQ--R-I------GSSLSISHVEESDSGVWNCVANNSEGQ 299 (371)
Q Consensus 240 ~~l~C~~~~-~p~~~v~W~~~~~~~~~~~~~~--~-~------~~~l~i~~~~~~d~G~Y~C~a~n~~g~ 299 (371)
+.|+|.+.+ +|.+.|+|+++|..+....... . . .+.|.+.....+|...|+|+|.+....
T Consensus 2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~ 71 (83)
T cd07705 2 AKLRCTSSGSKPAANIKWRKGDQELEGAPTSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLH 71 (83)
T ss_pred EEEEEEecCccCCCEeEEEECCEECCCcceeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccC
Confidence 579999987 5888999999998776532111 1 1 134555556677788999999998754
No 286
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=98.34 E-value=3.8e-06 Score=56.86 Aligned_cols=89 Identities=20% Similarity=0.330 Sum_probs=53.9
Q ss_pred CcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcc--cCcCCCeeEEEEEeCCceeE----eccceEEEEEeecCC
Q psy14542 112 HRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDR--VQREDAGMYQCHIEDGKYHM----LSSGELIIHQVDESD 185 (371)
Q Consensus 112 ~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~--~~~~~~g~y~~~~~~~~~~~----~~~~~l~i~~~~~~d 185 (371)
++++|.|..........+.|.|.... . ...+.+.. ....-.+.|. +|..+ ..+.+|.|.+++.+|
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~---~-~~~ia~y~~~~g~~~~~~y~-----~Rv~~~~~~~~d~sl~i~nv~~~D 71 (96)
T cd05887 1 KNVTLKCRIQVNETITQSSWEKIHGK---G-SVTLAVHHPMYGISIQPDYQ-----GRVSFKNYSLLDATIMLENVGFSD 71 (96)
T ss_pred CCEEEEEEecCCCcEEEEEEEEcCCC---C-cEEEEEEcccCCcccChhhC-----CcEEEcCCCCCccEEEEeCCCccc
Confidence 36899999975444478999885321 0 01111111 1111112222 12222 235789999999999
Q ss_pred ccceeEEEeeccccceeeeeeccceeee
Q psy14542 186 RYRSYQCRGVNKLTGASLLSVNRGRLSL 213 (371)
Q Consensus 186 ~~g~y~C~~~~~~~~~~~~~~~~~~l~v 213 (371)
+|.|+|.+.....|....+. .|.|
T Consensus 72 -~G~Y~C~v~tfP~G~~~~~~---~l~~ 95 (96)
T cd05887 72 -IGVYICKAVTFPLGNTQSST---TVTV 95 (96)
T ss_pred -cEEEEEEEEeCCCCCeeEEE---EEEE
Confidence 99999999887677777666 6654
No 287
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=98.33 E-value=3.6e-06 Score=57.02 Aligned_cols=65 Identities=20% Similarity=0.385 Sum_probs=44.8
Q ss_pred CcEEEEEEecCCCCCCeeEEEeCCE----EEee-----C------------------CeeEEEEccCCcCCCeEEEEEEE
Q psy14542 27 HRIELHCRVSPKRLSSAKAWLKDGL----VLRR-----N------------------SDEVLVLDRVQREDAGMYQCHVS 79 (371)
Q Consensus 27 ~~v~l~C~~~~~~~~~~~~W~~~~~----~~~~-----~------------------~~~~l~i~~~~~~d~G~Y~C~~~ 79 (371)
+.++|.|..........+.|.|-.. .+.. + .+.+|.|.+++.+|+|.|+|.+.
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~~ 80 (96)
T cd05889 1 EKMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEEDVGLYCCSLV 80 (96)
T ss_pred CCEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcccCEEEEEEEE
Confidence 4688999665444456688988321 1111 0 45789999999999999999997
Q ss_pred c-CCCCeEEEEEE
Q psy14542 80 A-DDDSAQMSAQV 91 (371)
Q Consensus 80 ~-~~~~~~~~~~l 91 (371)
. +.|..++.+.|
T Consensus 81 t~P~g~~~~~i~~ 93 (96)
T cd05889 81 TYPQGSWEKVIEV 93 (96)
T ss_pred eCCCCCeEEEEEE
Confidence 4 45666665554
No 288
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=98.33 E-value=4.2e-06 Score=59.10 Aligned_cols=63 Identities=32% Similarity=0.541 Sum_probs=47.2
Q ss_pred eecCCeEEEEEEeecCCCCceEEEeCCc--ccc----------------cCCceEE-----ecceEEEeccCCCCCeEEE
Q psy14542 234 VKKDESVILPCSAQGNPLPTIKWYKQDS--PVE----------------ESDRIQR-----IGSSLSISHVEESDSGVWN 290 (371)
Q Consensus 234 ~~~g~~~~l~C~~~~~p~~~v~W~~~~~--~~~----------------~~~~~~~-----~~~~l~i~~~~~~d~G~Y~ 290 (371)
+.+|++++|.|.+.+ +...+.|++... .+. ...++.. ...+|.|.+++.+|+|.|.
T Consensus 10 v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~~Dsg~Y~ 88 (110)
T cd05899 10 KGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEPEDSAVYL 88 (110)
T ss_pred EcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCChhhCEEEE
Confidence 899999999999987 667899998532 110 1133331 2247999999999999999
Q ss_pred EEEEcCC
Q psy14542 291 CVANNSE 297 (371)
Q Consensus 291 C~a~n~~ 297 (371)
|.+.+..
T Consensus 89 Ca~~~~~ 95 (110)
T cd05899 89 CASSLGG 95 (110)
T ss_pred EEeeCCC
Confidence 9998754
No 289
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=98.32 E-value=2.2e-06 Score=58.76 Aligned_cols=79 Identities=14% Similarity=0.160 Sum_probs=47.7
Q ss_pred cCCcEEEEEEecC-CCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEec-cceEEEEEeecCCcc
Q psy14542 110 VGHRIELHCRVSP-KRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLS-SGELIIHQVDESDRY 187 (371)
Q Consensus 110 ~g~~v~l~C~~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~-~~~l~i~~~~~~d~~ 187 (371)
.|++|+|.|.... ... ..+.|++....+....... .... .....+.| .++..+.. +.+|.|.+++.+| +
T Consensus 3 ~G~sVtL~c~~~~~~~~-~~v~W~~~~~~~i~~~~~~-~~~~-~~~~~~~f-----~~R~~~~~~~~sL~I~~~~~~D-s 73 (97)
T cd05775 3 LGGSVTLPLNIPDGTEI-ESITWSFNTSLAIITPGEE-TAPE-IIVTDPSY-----KERVNFSQNDYSLQISNLKMED-A 73 (97)
T ss_pred cCCeEEEeCCCCCCcEE-EEEEEecCCEeEEEecCCC-CCCc-cEEeCCCc-----eeeEEecCCceeEEECCCchHH-C
Confidence 6999999998865 333 6899999743222111000 0000 00001111 12344433 3789999999999 9
Q ss_pred ceeEEEeecc
Q psy14542 188 RSYQCRGVNK 197 (371)
Q Consensus 188 g~y~C~~~~~ 197 (371)
|.|.|.+...
T Consensus 74 G~Y~c~v~~~ 83 (97)
T cd05775 74 GSYRAEINTK 83 (97)
T ss_pred EEEEEEEEcC
Confidence 9999999987
No 290
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=98.32 E-value=6.1e-06 Score=56.42 Aligned_cols=89 Identities=16% Similarity=0.244 Sum_probs=52.0
Q ss_pred cEEEEEEecCCCC---CceEEEeeCCEEeeeCCeeEEEEc-ccCcCCCeeEEEEEeCCceeEe----ccceEEEEEeecC
Q psy14542 113 RIELHCRVSPKRL---SSAKAWLKDGLVLRRNSDEVLVLD-RVQREDAGMYQCHIEDGKYHML----SSGELIIHQVDES 184 (371)
Q Consensus 113 ~v~l~C~~~~~~~---~~~v~W~~~~~~~~~~~~~~~~~~-~~~~~~~g~y~~~~~~~~~~~~----~~~~l~i~~~~~~ 184 (371)
.++|.|......+ ...|.|.+... .........+ .......+.|. +|..+. .+.+|.|.+++.+
T Consensus 2 ~v~L~C~f~~~~~~~~~~~V~W~k~~~---~~~~~va~y~~~~g~~~~~~f~-----~Rv~f~~~~~~daSi~i~nl~~~ 73 (99)
T cd05886 2 DVVLHCSFINPLPPVKITQVTWQKLTN---GSKQNVAIYNPSMGVSVLPPYR-----ERVTFKNPSFEDGTISLSRLELE 73 (99)
T ss_pred cEEEEeEeecCCCCCCeEEEEEEECCC---CCceEEEEECCcCCcccCcccc-----CcEEEcCCCCCcceEEEcCCccc
Confidence 6899999974321 13799987421 1111122222 11222233332 233322 4578999999999
Q ss_pred CccceeEEEeeccccceeeeeeccceeee
Q psy14542 185 DRYRSYQCRGVNKLTGASLLSVNRGRLSL 213 (371)
Q Consensus 185 d~~g~y~C~~~~~~~~~~~~~~~~~~l~v 213 (371)
| +|.|+|.+.+...|...... .|.|
T Consensus 74 D-~G~Y~C~v~t~P~g~~~~~~---~L~V 98 (99)
T cd05886 74 D-EGVYICEFATFPTGNRESQL---NLTV 98 (99)
T ss_pred c-CEEEEEEEEeCCCCCeEEEE---EEEE
Confidence 9 99999999995366554444 5544
No 291
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.31 E-value=8.5e-06 Score=52.92 Aligned_cols=74 Identities=16% Similarity=0.394 Sum_probs=52.6
Q ss_pred eecCCeEEEEEEeecCC--CCceEEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEe
Q psy14542 234 VKKDESVILPCSAQGNP--LPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYA 309 (371)
Q Consensus 234 ~~~g~~~~l~C~~~~~p--~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 309 (371)
+..|++++|+|.....+ .+.++|...+...... ......+|.+..+...|+|.++|.+..........+.+.|.
T Consensus 11 lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~~--~~~~~ktL~~~qv~~qdSG~WtC~V~~~~k~~~~~~~V~Vl 86 (88)
T cd07694 11 VLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQI--LNQDKKTLNLVQLGPNDSGTWDCIVSVNSSEKTLKLDIKVL 86 (88)
T ss_pred eecCCcEEEEEecCCCCCCCccEEEeCCCCcccee--ccCCccEEEeceeCcccCCEEEEEEEECceEEEEEeeEEEE
Confidence 88999999999986544 4589998655432211 11245689999999999999999998654445555555553
No 292
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=98.29 E-value=1.1e-05 Score=55.67 Aligned_cols=36 Identities=17% Similarity=0.388 Sum_probs=30.8
Q ss_pred cceEEEeccCCCCCeEEEEEEEc-CCCCceeEEEEEE
Q psy14542 273 GSSLSISHVEESDSGVWNCVANN-SEGQDKMQLFIQY 308 (371)
Q Consensus 273 ~~~l~i~~~~~~d~G~Y~C~a~n-~~g~~~~~~~l~v 308 (371)
+.+|.|.+++.+|+|.|.|.+.+ ..|.....+.|.|
T Consensus 63 ~~sL~I~nv~~sD~GtY~C~v~~~p~g~~~~~~~L~V 99 (100)
T cd05888 63 DGALILRNAVQADEGKYKCRVITFPAGNFEAELVLTV 99 (100)
T ss_pred ceEEEEecCccccceEEEEEEEeCCCCCeeeEEEEEe
Confidence 45799999999999999999987 6777777777776
No 293
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=98.28 E-value=6.1e-06 Score=58.85 Aligned_cols=87 Identities=15% Similarity=0.312 Sum_probs=50.0
Q ss_pred CceeeecCCcEEEEEEecCCC---CCceEEEeeCCEEeeeCCeeEEEEcccC--cCCCeeEEEEEeCCceeEe-----cc
Q psy14542 104 NQVVVDVGHRIELHCRVSPKR---LSSAKAWLKDGLVLRRNSDEVLVLDRVQ--REDAGMYQCHIEDGKYHML-----SS 173 (371)
Q Consensus 104 ~~~~~~~g~~v~l~C~~~~~~---~~~~v~W~~~~~~~~~~~~~~~~~~~~~--~~~~g~y~~~~~~~~~~~~-----~~ 173 (371)
....+.+|+.++|.|.+.... ....+.|++....- ......+....-. ....+.|. +|..+. .+
T Consensus 6 ~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~-----~R~~~~~~~~~~~ 79 (116)
T cd05715 6 REVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGS-GDTESIFHYHKGPYYPLKDGRFK-----DRVEWVGNPSRKD 79 (116)
T ss_pred CeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCC-CCcEEEEEEcCCccccccCcccc-----CcEEEecCCcCCe
Confidence 344558999999999986432 11469998743210 0111112111111 01123332 122222 23
Q ss_pred ceEEEEEeecCCccceeEEEeecc
Q psy14542 174 GELIIHQVDESDRYRSYQCRGVNK 197 (371)
Q Consensus 174 ~~l~i~~~~~~d~~g~y~C~~~~~ 197 (371)
..|+|.+++.+| +|.|.|.+.+.
T Consensus 80 ~sL~I~~v~~~D-~G~Y~C~v~~~ 102 (116)
T cd05715 80 ASIVIHNLQFTD-NGTYTCDVKNP 102 (116)
T ss_pred eEEEEeeCCccc-CEEEEEEEEeC
Confidence 679999999999 99999999976
No 294
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.28 E-value=2.1e-06 Score=59.20 Aligned_cols=59 Identities=22% Similarity=0.348 Sum_probs=42.7
Q ss_pred EEeccCcEEEEEEecCC-CCCCeeEEEeCC---EE--Eee-----------C-------CeeEEEEccCCcCCCeEEEEE
Q psy14542 22 VVDVGHRIELHCRVSPK-RLSSAKAWLKDG---LV--LRR-----------N-------SDEVLVLDRVQREDAGMYQCH 77 (371)
Q Consensus 22 ~~~~G~~v~l~C~~~~~-~~~~~~~W~~~~---~~--~~~-----------~-------~~~~l~i~~~~~~d~G~Y~C~ 77 (371)
.+.+|++++|.|..... .....+.||+.. .. +.. . ...+|.|.+++.+|+|.|.|.
T Consensus 2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~ 81 (98)
T cd04984 2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYYCQ 81 (98)
T ss_pred ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEEEE
Confidence 57899999999965433 144569999821 11 110 0 456799999999999999999
Q ss_pred EEc
Q psy14542 78 VSA 80 (371)
Q Consensus 78 ~~~ 80 (371)
+.+
T Consensus 82 ~~~ 84 (98)
T cd04984 82 VWD 84 (98)
T ss_pred Ecc
Confidence 874
No 295
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=98.28 E-value=3.7e-06 Score=58.89 Aligned_cols=65 Identities=32% Similarity=0.517 Sum_probs=48.0
Q ss_pred eecCCeEEEEEEeecC-CCCceEEEeCCcc--c---------------ccCCceEE------ecceEEEeccCCCCCeEE
Q psy14542 234 VKKDESVILPCSAQGN-PLPTIKWYKQDSP--V---------------EESDRIQR------IGSSLSISHVEESDSGVW 289 (371)
Q Consensus 234 ~~~g~~~~l~C~~~~~-p~~~v~W~~~~~~--~---------------~~~~~~~~------~~~~l~i~~~~~~d~G~Y 289 (371)
+..|+.++|.|.+... +...+.|++.... . ....++.. ...+|.|.+++.+|+|.|
T Consensus 3 v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~Y 82 (105)
T cd00099 3 VSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSAVY 82 (105)
T ss_pred ecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCEEE
Confidence 7889999999999876 5677999985331 0 01123331 123799999999999999
Q ss_pred EEEEEcCCC
Q psy14542 290 NCVANNSEG 298 (371)
Q Consensus 290 ~C~a~n~~g 298 (371)
.|.+.+..+
T Consensus 83 ~C~v~~~~~ 91 (105)
T cd00099 83 YCAVSLSGG 91 (105)
T ss_pred EEEEecCCC
Confidence 999987765
No 296
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=98.27 E-value=9.6e-06 Score=53.68 Aligned_cols=66 Identities=20% Similarity=0.329 Sum_probs=42.4
Q ss_pred EEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEE
Q psy14542 114 IELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCR 193 (371)
Q Consensus 114 v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~ 193 (371)
+.|.|.+.+..+.+.++|++++..+.... . .... .+.|.| ... +.|.+.....++ .+.|+|.
T Consensus 2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~--~---~~~~-~~~~~~---------~~~--s~l~~~~~~~d~-g~~~~C~ 63 (82)
T cd05761 2 VELTCTSSGSKPAATIRWFKGDKELKGVK--L---KEED-ENGKTF---------TVT--SSLRFQVDREDD-GAPIICR 63 (82)
T ss_pred EEEEEEecCcCcCCeEEEEECCEEccCce--e---eEec-CCCCEE---------EEE--EEEEEEcchhhC-CCEEEEE
Confidence 68999998874448999999998886432 1 0111 111222 221 456665555556 7899999
Q ss_pred eecc
Q psy14542 194 GVNK 197 (371)
Q Consensus 194 ~~~~ 197 (371)
+.+.
T Consensus 64 v~h~ 67 (82)
T cd05761 64 VDHP 67 (82)
T ss_pred EeCh
Confidence 9987
No 297
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=98.27 E-value=8.1e-06 Score=54.02 Aligned_cols=56 Identities=16% Similarity=0.325 Sum_probs=39.5
Q ss_pred EEEEEEecCCCCCCeeEEEeCCEEEeeC-------Ce-------eEEEEccCCcCCCeEEEEEEEcCCCC
Q psy14542 29 IELHCRVSPKRLSSAKAWLKDGLVLRRN-------SD-------EVLVLDRVQREDAGMYQCHVSADDDS 84 (371)
Q Consensus 29 v~l~C~~~~~~~~~~~~W~~~~~~~~~~-------~~-------~~l~i~~~~~~d~G~Y~C~~~~~~~~ 84 (371)
++|.|.+.+++|...|.|+++|..+... .+ ..|.+.....+|...|+|.+.+....
T Consensus 2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~ 71 (83)
T cd07705 2 AKLRCTSSGSKPAANIKWRKGDQELEGAPTSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLH 71 (83)
T ss_pred EEEEEEecCccCCCEeEEEECCEECCCcceeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccC
Confidence 6899988888899999999999876542 11 23344334444556999999987643
No 298
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=98.25 E-value=9.5e-06 Score=53.69 Aligned_cols=56 Identities=20% Similarity=0.339 Sum_probs=39.5
Q ss_pred EEEEEEecCCCCCCeeEEEeCCEEEeeC-------C------eeEEEEccCCcCCCeEEEEEEEcCCCC
Q psy14542 29 IELHCRVSPKRLSSAKAWLKDGLVLRRN-------S------DEVLVLDRVQREDAGMYQCHVSADDDS 84 (371)
Q Consensus 29 v~l~C~~~~~~~~~~~~W~~~~~~~~~~-------~------~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 84 (371)
+.|.|.+..+.|.+.+.|+++++.+... . ...|.+.....++.+.|+|.+.+....
T Consensus 2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~ 70 (82)
T cd05761 2 VELTCTSSGSKPAATIRWFKGDKELKGVKLKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALK 70 (82)
T ss_pred EEEEEEecCcCcCCeEEEEECCEEccCceeeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcC
Confidence 6899988788888999999999876532 1 223444433444456999999987654
No 299
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=98.24 E-value=1e-05 Score=54.71 Aligned_cols=63 Identities=30% Similarity=0.593 Sum_probs=45.4
Q ss_pred CCeEEEEEEee-cCCCCceEEEeCCcccccC---------CceEEecceEEEeccCCCCCeEEEEEEEcCCCC
Q psy14542 237 DESVILPCSAQ-GNPLPTIKWYKQDSPVEES---------DRIQRIGSSLSISHVEESDSGVWNCVANNSEGQ 299 (371)
Q Consensus 237 g~~~~l~C~~~-~~p~~~v~W~~~~~~~~~~---------~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~ 299 (371)
|+.+.|+|.+. ++|++.++|+.++..+... .......+.|.+..-..++...++|+|.+....
T Consensus 14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~~ 86 (89)
T PF08205_consen 14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPALS 86 (89)
T ss_dssp TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTCC
T ss_pred ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCccC
Confidence 67999999865 6899999999999877111 111223356777776677888999999987654
No 300
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.22 E-value=3.1e-06 Score=58.26 Aligned_cols=74 Identities=16% Similarity=0.311 Sum_probs=49.1
Q ss_pred cceEEEeCCCcEEEeccCcEEEEEEecCCCC-CCeeEEEeCCEEEeeC---------------CeeEEEEccCCcCCCeE
Q psy14542 10 SLSIEMSPSGQVVVDVGHRIELHCRVSPKRL-SSAKAWLKDGLVLRRN---------------SDEVLVLDRVQREDAGM 73 (371)
Q Consensus 10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~-~~~~~W~~~~~~~~~~---------------~~~~l~i~~~~~~d~G~ 73 (371)
+|.+.+.|........++.++|.|.+...+| ...+.|++||..+... ....|.+..-...+...
T Consensus 1 pP~V~v~~p~~~~~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ 80 (100)
T cd07699 1 APSVTIFPPSSEELEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKV 80 (100)
T ss_pred CCeEEEECCCHHHHccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCe
Confidence 3667777766345557888999998777676 6679999999887433 12233343333333558
Q ss_pred EEEEEEcCCC
Q psy14542 74 YQCHVSADDD 83 (371)
Q Consensus 74 Y~C~~~~~~~ 83 (371)
|+|.+.....
T Consensus 81 ~sC~V~H~~l 90 (100)
T cd07699 81 YTCEVTHEGL 90 (100)
T ss_pred EEEEEEecCC
Confidence 9999987543
No 301
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=98.21 E-value=1.6e-05 Score=55.59 Aligned_cols=37 Identities=22% Similarity=0.405 Sum_probs=33.3
Q ss_pred cceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEe
Q psy14542 273 GSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYA 309 (371)
Q Consensus 273 ~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 309 (371)
+.+|.|.+++.+|+|.|.|.+.+.......++.|.|.
T Consensus 78 ~asL~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~ 114 (117)
T cd05901 78 DASLTIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVS 114 (117)
T ss_pred ceEEEEcccccccCEEEEEEEEECCcccEEEEEEEEE
Confidence 4689999999999999999999988888888888875
No 302
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=98.19 E-value=2.6e-05 Score=58.43 Aligned_cols=80 Identities=20% Similarity=0.405 Sum_probs=60.2
Q ss_pred eecCCeEEEEEEee-cCCCCceEEEeCCccc----------cc--CCceEE-----ecceEEEeccCCCCCeEEEEEEEc
Q psy14542 234 VKKDESVILPCSAQ-GNPLPTIKWYKQDSPV----------EE--SDRIQR-----IGSSLSISHVEESDSGVWNCVANN 295 (371)
Q Consensus 234 ~~~g~~~~l~C~~~-~~p~~~v~W~~~~~~~----------~~--~~~~~~-----~~~~l~i~~~~~~d~G~Y~C~a~n 295 (371)
+.+|++++|.|... +...+.+.|+|....+ .. .+|+.. .+..|.|.+++.+|+|.|.|....
T Consensus 27 V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C~F~t 106 (189)
T PHA02987 27 VSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTCIFNT 106 (189)
T ss_pred EcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEEEEEe
Confidence 89999999999974 5566789999864321 11 124443 456899999999999999998764
Q ss_pred -CCC-CceeEEEEEEecCcc
Q psy14542 296 -SEG-QDKMQLFIQYAHGKY 313 (371)
Q Consensus 296 -~~g-~~~~~~~l~v~~~p~ 313 (371)
+.| ..+.+.-|.|.....
T Consensus 107 fp~G~~~~gt~CLtVt~~~~ 126 (189)
T PHA02987 107 LLSKNNEKGVVCLNVTTDSY 126 (189)
T ss_pred cCCCCCceeEEEEEEEchhh
Confidence 456 778888898886554
No 303
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=98.19 E-value=5.6e-06 Score=56.76 Aligned_cols=61 Identities=20% Similarity=0.352 Sum_probs=45.3
Q ss_pred eccCcEEEEEEecCCCC-CCeeEEEeCCEEEeeC---------------CeeEEEEccCCcCCCeEEEEEEEcCCCC
Q psy14542 24 DVGHRIELHCRVSPKRL-SSAKAWLKDGLVLRRN---------------SDEVLVLDRVQREDAGMYQCHVSADDDS 84 (371)
Q Consensus 24 ~~G~~v~l~C~~~~~~~-~~~~~W~~~~~~~~~~---------------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 84 (371)
..|+.++|.|.+...+| ...+.|+++|..+... ....|.+......|.|.|+|.+.+....
T Consensus 11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~~ 87 (95)
T cd00098 11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESLP 87 (95)
T ss_pred HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence 47899999996665556 4689999998876533 2234666666666999999999986553
No 304
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=98.18 E-value=8.2e-06 Score=56.93 Aligned_cols=87 Identities=18% Similarity=0.232 Sum_probs=49.1
Q ss_pred CCcEEEEEEecCCC------CCceEEEeeCC--EEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEe------ccceE
Q psy14542 111 GHRIELHCRVSPKR------LSSAKAWLKDG--LVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHML------SSGEL 176 (371)
Q Consensus 111 g~~v~l~C~~~~~~------~~~~v~W~~~~--~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~------~~~~l 176 (371)
|++++|.|.+.-.+ ..+.+.|.+.. ..... ...+...+-.....+.| .+|..+. .+.+|
T Consensus 2 ~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~--~~v~v~~~~~~~~~~~y-----~gRvsl~~~~~~~~~asL 74 (110)
T cd05902 2 SSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQ--RPVLVARDNVVRVAKAF-----QGRVSLPGYPKNRYNASL 74 (110)
T ss_pred CCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceE--EEEEECCCCcEEEchhc-----ccEEEeecCCCCCceEEE
Confidence 78999999965321 23799998742 11110 00111111010011222 2344443 24689
Q ss_pred EEEEeecCCccceeEEEeeccccceeeeee
Q psy14542 177 IIHQVDESDRYRSYQCRGVNKLTGASLLSV 206 (371)
Q Consensus 177 ~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~ 206 (371)
.|.+++.+| +|.|+|.+... .......+
T Consensus 75 ~i~nv~~~D-~G~Y~C~v~~g-~~~~~~~v 102 (110)
T cd05902 75 VLSRLRYSD-SGTYRCEVVLG-INDEQDTV 102 (110)
T ss_pred EECCCCHHH-CEEEEEEEEEC-CcccEEEE
Confidence 999999999 99999999976 33333333
No 305
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=98.17 E-value=1.7e-05 Score=53.75 Aligned_cols=86 Identities=16% Similarity=0.210 Sum_probs=49.7
Q ss_pred CcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEe----ccceEEEEEeecCCcc
Q psy14542 112 HRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHML----SSGELIIHQVDESDRY 187 (371)
Q Consensus 112 ~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~----~~~~l~i~~~~~~d~~ 187 (371)
+.++|.|..........++|.|.... ...............-.+.|. +|.... .+.+|.|.+++.+| +
T Consensus 1 ~~vtL~C~~~~~~~~~qV~W~k~~~~--~~~~iavy~~~~g~~~~~~y~-----~Rv~f~~~~~~d~sI~i~nvt~~D-~ 72 (96)
T cd05889 1 EKMKLECVYPKTGVLIQVSWTKHNGS--HKENIAVYHPIYGMHIEDKYR-----GRVYFLNSTREDMSLSFNNATEED-V 72 (96)
T ss_pred CCEEEEeEcCCCCcEEEEEEEEcCCC--CCceEEEEECCCCCEECcccc-----CeEEEecCCCCccEEEEcCCCccc-C
Confidence 46899999865433478999985321 011111111111111122232 222222 35789999999999 9
Q ss_pred ceeEEEeeccccceeeee
Q psy14542 188 RSYQCRGVNKLTGASLLS 205 (371)
Q Consensus 188 g~y~C~~~~~~~~~~~~~ 205 (371)
|.|+|.+.....|.....
T Consensus 73 G~Y~C~~~t~P~g~~~~~ 90 (96)
T cd05889 73 GLYCCSLVTYPQGSWEKV 90 (96)
T ss_pred EEEEEEEEeCCCCCeEEE
Confidence 999999988745555443
No 306
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.17 E-value=1.9e-05 Score=52.13 Aligned_cols=67 Identities=13% Similarity=0.237 Sum_probs=44.0
Q ss_pred EEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEE
Q psy14542 114 IELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCR 193 (371)
Q Consensus 114 v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~ 193 (371)
+.|.|.+.++.+...++|+++|..+....... ......|.| ... +.|.+..-..++ ...|+|.
T Consensus 2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~-----~~~~~~~t~---------~~~--s~L~~~~~~~d~-g~~ytC~ 64 (83)
T cd05884 2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLK-----EEDANRKTF---------TVS--STLDFRVDRSDD-GVAIICR 64 (83)
T ss_pred EEEEEEeCCccCCCEEEEEECCEECcCceeeE-----eeCCCCCEE---------EEE--EEEEEEcccccC-CCEEEEE
Confidence 68999998876559999999999875432110 111122222 222 567776555666 8899999
Q ss_pred eecc
Q psy14542 194 GVNK 197 (371)
Q Consensus 194 ~~~~ 197 (371)
+.+.
T Consensus 65 v~h~ 68 (83)
T cd05884 65 VDHE 68 (83)
T ss_pred Eech
Confidence 9987
No 307
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.17 E-value=3.3e-06 Score=60.32 Aligned_cols=64 Identities=20% Similarity=0.453 Sum_probs=46.6
Q ss_pred eCCCcEEEeccCcEEEEEEecCC-CCCCeeEEEeC--CE-E--Ee---------------eC----------CeeEEEEc
Q psy14542 16 SPSGQVVVDVGHRIELHCRVSPK-RLSSAKAWLKD--GL-V--LR---------------RN----------SDEVLVLD 64 (371)
Q Consensus 16 ~p~~~~~~~~G~~v~l~C~~~~~-~~~~~~~W~~~--~~-~--~~---------------~~----------~~~~l~i~ 64 (371)
.|.. +.+.+|++++|.|..... .+...+.|||. +. . +. .. ...+|.|.
T Consensus 4 ~p~~-~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~ 82 (116)
T cd04982 4 PQLS-ITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQ 82 (116)
T ss_pred cCCe-EEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEE
Confidence 3444 789999999999966432 45677999983 11 0 00 00 34689999
Q ss_pred cCCcCCCeEEEEEEEc
Q psy14542 65 RVQREDAGMYQCHVSA 80 (371)
Q Consensus 65 ~~~~~d~G~Y~C~~~~ 80 (371)
+++.+|+|.|.|.+..
T Consensus 83 ~~~~~Dsg~Y~C~~~~ 98 (116)
T cd04982 83 NLEKEDSATYYCAYWE 98 (116)
T ss_pred ECCHHHCEEEEEEEec
Confidence 9999999999999864
No 308
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=98.17 E-value=9.8e-06 Score=58.03 Aligned_cols=64 Identities=25% Similarity=0.360 Sum_probs=45.3
Q ss_pred CCCcEEEeccCcEEEEEEecCCC-----CCCeeEEEeCC------EEEe-eC---------------------CeeEEEE
Q psy14542 17 PSGQVVVDVGHRIELHCRVSPKR-----LSSAKAWLKDG------LVLR-RN---------------------SDEVLVL 63 (371)
Q Consensus 17 p~~~~~~~~G~~v~l~C~~~~~~-----~~~~~~W~~~~------~~~~-~~---------------------~~~~l~i 63 (371)
|+. +.+.+|++|+|.|...... ....+.|||.. ..+. .. ...+|.|
T Consensus 6 P~~-v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I 84 (119)
T cd05712 6 PKS-VSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLI 84 (119)
T ss_pred CCE-EEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEE
Confidence 444 7899999999999654221 13458999832 1110 00 4578999
Q ss_pred ccCCcCCCeEEEEEEEcC
Q psy14542 64 DRVQREDAGMYQCHVSAD 81 (371)
Q Consensus 64 ~~~~~~d~G~Y~C~~~~~ 81 (371)
.+++.+|+|.|.|.+...
T Consensus 85 ~~l~~~Dsg~Y~C~~~~~ 102 (119)
T cd05712 85 SDAQPEDSGKYFFRVELG 102 (119)
T ss_pred ccCChhhCeEEEEEEEcC
Confidence 999999999999998764
No 309
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.17 E-value=1.2e-05 Score=56.30 Aligned_cols=63 Identities=27% Similarity=0.484 Sum_probs=45.2
Q ss_pred eecCCeEEEEEEeecCC-CCceEEEeCCc--cc----------c--cCCceEEe----cceEEEeccCCCCCeEEEEEEE
Q psy14542 234 VKKDESVILPCSAQGNP-LPTIKWYKQDS--PV----------E--ESDRIQRI----GSSLSISHVEESDSGVWNCVAN 294 (371)
Q Consensus 234 ~~~g~~~~l~C~~~~~p-~~~v~W~~~~~--~~----------~--~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~a~ 294 (371)
+.+|++++|.|.+.+.. ...+.|++... .+ . ...++... ...|.|.++..+|+|.|.|.+.
T Consensus 12 v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsg~Y~Ca~~ 91 (106)
T cd04980 12 VSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPEDAAVYYCQQY 91 (106)
T ss_pred ECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHHCEEEEEEEe
Confidence 89999999999987655 56799997431 10 0 01233321 1369999999999999999986
Q ss_pred cC
Q psy14542 295 NS 296 (371)
Q Consensus 295 n~ 296 (371)
+.
T Consensus 92 ~~ 93 (106)
T cd04980 92 GT 93 (106)
T ss_pred CC
Confidence 53
No 310
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=98.14 E-value=2.1e-05 Score=55.91 Aligned_cols=85 Identities=19% Similarity=0.322 Sum_probs=48.4
Q ss_pred eeeecCCcEEEEEEec-CCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEec-----cceEEEE
Q psy14542 106 VVVDVGHRIELHCRVS-PKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLS-----SGELIIH 179 (371)
Q Consensus 106 ~~~~~g~~v~l~C~~~-~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~-----~~~l~i~ 179 (371)
..+.+|+++.|.|... .... ..+.|++... .......+..... ......-....++..+.. +..|.|.
T Consensus 11 v~~~~G~~v~L~C~~~~~~~~-~~v~W~~~~~----~~~~~~i~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~ 84 (114)
T PF07686_consen 11 VTVQEGESVTLPCSYSSSSNQ-SSVYWYRQSP----GQGPQLIIRYSLS-STNETPTPSYSGRFTFSGNGSQNNFSLTIK 84 (114)
T ss_dssp EEEETTSEEEEEEEEESSSSG-SEEEEEEEET----TSEEEEEEEEETT-EEEEEEETTETTTEEEEEETTTTEEEEEES
T ss_pred EEEecCCCEEEEEEEeCCCCc-ceEEEEEECc----cccceeeeeeccc-eeeeccccceeeeeeeeecccCCeEEEEEC
Confidence 3448999999999998 3344 7999998332 0001111100000 000000001122333332 2469999
Q ss_pred EeecCCccceeEEEeecc
Q psy14542 180 QVDESDRYRSYQCRGVNK 197 (371)
Q Consensus 180 ~~~~~d~~g~y~C~~~~~ 197 (371)
+++.+| +|.|.|.+...
T Consensus 85 ~l~~~D-sG~Y~C~v~~~ 101 (114)
T PF07686_consen 85 NLQPSD-SGTYFCQVSTS 101 (114)
T ss_dssp SESGGG-EEEEEEEEEES
T ss_pred CCCcCc-CEEEEEEEEEC
Confidence 999999 99999999876
No 311
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.13 E-value=1.4e-05 Score=52.84 Aligned_cols=56 Identities=16% Similarity=0.350 Sum_probs=40.2
Q ss_pred EEEEEEecCCCCCCeeEEEeCCEEEeeC--------------CeeEEEEccCCcCCCeEEEEEEEcCCCC
Q psy14542 29 IELHCRVSPKRLSSAKAWLKDGLVLRRN--------------SDEVLVLDRVQREDAGMYQCHVSADDDS 84 (371)
Q Consensus 29 v~l~C~~~~~~~~~~~~W~~~~~~~~~~--------------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 84 (371)
++|.|.+..++|...+.|+|||..+... ....|.+..-...|...|+|++.+..-.
T Consensus 2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l~ 71 (83)
T cd05884 2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESLN 71 (83)
T ss_pred EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhcC
Confidence 6899988888888999999999886543 1234555544444555999999876543
No 312
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=98.12 E-value=1.5e-05 Score=56.93 Aligned_cols=62 Identities=26% Similarity=0.558 Sum_probs=46.0
Q ss_pred eecCCeEEEEEEeec--CCCCceEEEeCC--cccc-----------------cCCceEE------ecceEEEeccCCCCC
Q psy14542 234 VKKDESVILPCSAQG--NPLPTIKWYKQD--SPVE-----------------ESDRIQR------IGSSLSISHVEESDS 286 (371)
Q Consensus 234 ~~~g~~~~l~C~~~~--~p~~~v~W~~~~--~~~~-----------------~~~~~~~------~~~~l~i~~~~~~d~ 286 (371)
+..|+.++|.|.+.+ .+.+.+.|++.. ..+. ...++.. ....|.|.+++.+|+
T Consensus 10 ~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Ds 89 (116)
T cd04982 10 REESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQNLEKEDS 89 (116)
T ss_pred eCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEECCHHHC
Confidence 888999999999877 567789999842 2110 1234432 124699999999999
Q ss_pred eEEEEEEEc
Q psy14542 287 GVWNCVANN 295 (371)
Q Consensus 287 G~Y~C~a~n 295 (371)
|.|.|.+..
T Consensus 90 g~Y~C~~~~ 98 (116)
T cd04982 90 ATYYCAYWE 98 (116)
T ss_pred EEEEEEEec
Confidence 999999864
No 313
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=98.08 E-value=1.4e-05 Score=56.07 Aligned_cols=59 Identities=25% Similarity=0.442 Sum_probs=42.1
Q ss_pred EEeccCcEEEEEEecCCCCCCeeEEEeC--C---EE---E-e--------------eC----------CeeEEEEccCCc
Q psy14542 22 VVDVGHRIELHCRVSPKRLSSAKAWLKD--G---LV---L-R--------------RN----------SDEVLVLDRVQR 68 (371)
Q Consensus 22 ~~~~G~~v~l~C~~~~~~~~~~~~W~~~--~---~~---~-~--------------~~----------~~~~l~i~~~~~ 68 (371)
.+.+|++++|.|..........+.|||- | .. + . .. ....|.|.+++.
T Consensus 2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~ 81 (107)
T cd07700 2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKP 81 (107)
T ss_pred EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCH
Confidence 5789999999997544333457999982 2 10 0 0 00 235699999999
Q ss_pred CCCeEEEEEEEc
Q psy14542 69 EDAGMYQCHVSA 80 (371)
Q Consensus 69 ~d~G~Y~C~~~~ 80 (371)
+|+|.|.|....
T Consensus 82 ~Dsg~YyCa~~~ 93 (107)
T cd07700 82 EDSGTYFCMTVG 93 (107)
T ss_pred HHCEEEEEeEcC
Confidence 999999999863
No 314
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=98.07 E-value=1.5e-05 Score=56.01 Aligned_cols=77 Identities=10% Similarity=0.199 Sum_probs=48.7
Q ss_pred cceEEEeCCCcEEEeccCcEEEEEEecCCCCC-CeeEEEeCCEEEeeC----------------CeeEEEEccCCcCC-C
Q psy14542 10 SLSIEMSPSGQVVVDVGHRIELHCRVSPKRLS-SAKAWLKDGLVLRRN----------------SDEVLVLDRVQRED-A 71 (371)
Q Consensus 10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~-~~~~W~~~~~~~~~~----------------~~~~l~i~~~~~~d-~ 71 (371)
+|.+.+.|.....+.+++.++|.|.+...+|. ..+.|++|+..+... ....|.|......| .
T Consensus 2 ~P~V~v~~ps~~e~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~ 81 (115)
T cd05769 2 PPTVAIFPPSEAEIRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPR 81 (115)
T ss_pred CCEEEEECcChHHhccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCC
Confidence 45666666553455567889999977776776 479999999876532 12233333332223 3
Q ss_pred eEEEEEEEcCCCCeE
Q psy14542 72 GMYQCHVSADDDSAQ 86 (371)
Q Consensus 72 G~Y~C~~~~~~~~~~ 86 (371)
..|+|.+........
T Consensus 82 ~~ytC~V~H~g~~~~ 96 (115)
T cd05769 82 NTFTCIVQFYGGTDT 96 (115)
T ss_pred CeEEEEEEEeCCccc
Confidence 489999887654443
No 315
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.04 E-value=2.2e-05 Score=54.11 Aligned_cols=63 Identities=25% Similarity=0.458 Sum_probs=44.9
Q ss_pred eecCCeEEEEEEeecC--CCCceEEEeCCc--ccc------------cCCceEE----ecceEEEeccCCCCCeEEEEEE
Q psy14542 234 VKKDESVILPCSAQGN--PLPTIKWYKQDS--PVE------------ESDRIQR----IGSSLSISHVEESDSGVWNCVA 293 (371)
Q Consensus 234 ~~~g~~~~l~C~~~~~--p~~~v~W~~~~~--~~~------------~~~~~~~----~~~~l~i~~~~~~d~G~Y~C~a 293 (371)
+..|++++|.|...+. ....+.|++... .+. ...++.. ....|.|.+++.+|+|.|.|.+
T Consensus 3 v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~ 82 (98)
T cd04984 3 VSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYYCQV 82 (98)
T ss_pred cCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEEEEE
Confidence 7889999999998764 456799997432 110 1123432 1236999999999999999998
Q ss_pred EcC
Q psy14542 294 NNS 296 (371)
Q Consensus 294 ~n~ 296 (371)
.+.
T Consensus 83 ~~~ 85 (98)
T cd04984 83 WDS 85 (98)
T ss_pred ccC
Confidence 753
No 316
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=98.04 E-value=2.6e-05 Score=52.68 Aligned_cols=60 Identities=20% Similarity=0.320 Sum_probs=44.0
Q ss_pred cCcEEEEEEecCCCCCCeeEEEeCCEEEeeC--------------CeeEEEEccCCcCCCeEEEEEEEcCCCCe
Q psy14542 26 GHRIELHCRVSPKRLSSAKAWLKDGLVLRRN--------------SDEVLVLDRVQREDAGMYQCHVSADDDSA 85 (371)
Q Consensus 26 G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~--------------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~ 85 (371)
|+.+.|.|....++|.+.+.|+.++..+... ..+.|.+..-..++...++|.+.+.....
T Consensus 14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~~~ 87 (89)
T PF08205_consen 14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPALSQ 87 (89)
T ss_dssp TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTCCE
T ss_pred ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCccCC
Confidence 7899999988889999999999998777111 23466676544445668999999876543
No 317
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=98.02 E-value=1.8e-05 Score=54.51 Aligned_cols=66 Identities=15% Similarity=0.357 Sum_probs=43.7
Q ss_pred eecCCeEEEEEEeec-CC-CCceEEEeCCcccccCCc---eE-Eecc------eEEEeccCCCCCeEEEEEEEcCCCC
Q psy14542 234 VKKDESVILPCSAQG-NP-LPTIKWYKQDSPVEESDR---IQ-RIGS------SLSISHVEESDSGVWNCVANNSEGQ 299 (371)
Q Consensus 234 ~~~g~~~~l~C~~~~-~p-~~~v~W~~~~~~~~~~~~---~~-~~~~------~l~i~~~~~~d~G~Y~C~a~n~~g~ 299 (371)
...++.++|+|.+.| +| ...+.|++||..+..+.. .. ..++ .|.+.....++...|+|++.+....
T Consensus 14 ~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~sC~V~H~~l~ 91 (100)
T cd07699 14 LEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVYTCEVTHEGLS 91 (100)
T ss_pred HccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEecCCC
Confidence 445677999999998 45 357999999988753311 11 1122 4555555555678999999886543
No 318
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=97.97 E-value=0.00011 Score=49.83 Aligned_cols=70 Identities=21% Similarity=0.292 Sum_probs=44.1
Q ss_pred eEEEeCCCcEEEeccCcEEEEEEecCCCCCC-eeEEEeCCEEEeeC---------CeeEEEE---ccCCcCCCeEEEEEE
Q psy14542 12 SIEMSPSGQVVVDVGHRIELHCRVSPKRLSS-AKAWLKDGLVLRRN---------SDEVLVL---DRVQREDAGMYQCHV 78 (371)
Q Consensus 12 ~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~-~~~W~~~~~~~~~~---------~~~~l~i---~~~~~~d~G~Y~C~~ 78 (371)
.+.+.|.. .+..|+.++|.|.+...+|.. .+.|++||..+... .++++.+ -.+...+...|+|.+
T Consensus 2 ~v~v~~~~--~~~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~~~~~~~~ysC~V 79 (94)
T cd05766 2 SVKISPSQ--TGSLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLETTPSRGDTYTCVV 79 (94)
T ss_pred EEEEEeCC--CccCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEEcCCCCCEEEEEE
Confidence 44555554 234689999999877767655 79999999886542 1112221 123334555888888
Q ss_pred EcCCC
Q psy14542 79 SADDD 83 (371)
Q Consensus 79 ~~~~~ 83 (371)
.....
T Consensus 80 ~H~~l 84 (94)
T cd05766 80 EHSSL 84 (94)
T ss_pred EeCCC
Confidence 76544
No 319
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=97.96 E-value=4.4e-05 Score=54.37 Aligned_cols=64 Identities=22% Similarity=0.401 Sum_probs=44.5
Q ss_pred eCCCcEEEeccCcEEEEEEecCCC-CCCeeEEEeC---CEE--E---e--------e----C----------CeeEEEEc
Q psy14542 16 SPSGQVVVDVGHRIELHCRVSPKR-LSSAKAWLKD---GLV--L---R--------R----N----------SDEVLVLD 64 (371)
Q Consensus 16 ~p~~~~~~~~G~~v~l~C~~~~~~-~~~~~~W~~~---~~~--~---~--------~----~----------~~~~l~i~ 64 (371)
.|.. ..+.+|++++|.|...... ....+.|||- +.+ + . . . ....|.|.
T Consensus 3 ~~~~-~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~ 81 (117)
T cd04981 3 ESGP-GLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLN 81 (117)
T ss_pred cCCC-eEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEEC
Confidence 3555 7899999999999654322 2456999981 111 1 0 0 0 22479999
Q ss_pred cCCcCCCeEEEEEEEc
Q psy14542 65 RVQREDAGMYQCHVSA 80 (371)
Q Consensus 65 ~~~~~d~G~Y~C~~~~ 80 (371)
+++.+|+|.|.|.+..
T Consensus 82 ~~~~~Dsa~YyCa~~~ 97 (117)
T cd04981 82 SLTPEDTAVYYCARGL 97 (117)
T ss_pred CCCHHHCEEEEEEEEc
Confidence 9999999999999864
No 320
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=97.95 E-value=0.00012 Score=51.30 Aligned_cols=65 Identities=25% Similarity=0.397 Sum_probs=42.1
Q ss_pred eecCCeEEEEEEeecC-CC-CceEEEeCCcccccCCceE---------EecceEEEeccCCCCCe-EEEEEEEcCCCC
Q psy14542 234 VKKDESVILPCSAQGN-PL-PTIKWYKQDSPVEESDRIQ---------RIGSSLSISHVEESDSG-VWNCVANNSEGQ 299 (371)
Q Consensus 234 ~~~g~~~~l~C~~~~~-p~-~~v~W~~~~~~~~~~~~~~---------~~~~~l~i~~~~~~d~G-~Y~C~a~n~~g~ 299 (371)
...|+.++|.|.+.|+ |. .+++|++||..+.....-. ...+.|.+... ..|.| .|+|.+.+....
T Consensus 18 ~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~~~~p~~d~~ty~~~S~L~~~~~-~~d~~~~ytC~V~H~~l~ 94 (111)
T cd05772 18 ANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQPNITPEGDSVSYNVTSTVQVKLT-EDDVHSQVTCEVQHRTLQ 94 (111)
T ss_pred cCCCCCEEEEEEEeeEeCCCCEEEEEECCEECcccccceeeCCCCCcEEEEEEEEEECc-cccccCceEEEEEeCCCC
Confidence 5578889999999984 53 5799999999875431111 11123445433 33434 699999987543
No 321
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=97.94 E-value=5.7e-05 Score=48.11 Aligned_cols=59 Identities=46% Similarity=0.742 Sum_probs=44.7
Q ss_pred EEEEEEeecCCCCceEEEeCCcccccCC--------ceEEecceEEEeccCCCCCeEEEEEEEcCCC
Q psy14542 240 VILPCSAQGNPLPTIKWYKQDSPVEESD--------RIQRIGSSLSISHVEESDSGVWNCVANNSEG 298 (371)
Q Consensus 240 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~--------~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g 298 (371)
+.|.|.+.+.+...+.|++++....... ........|.|.++..+|.|.|.|.+.+..+
T Consensus 1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~ 67 (74)
T cd00096 1 VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSAG 67 (74)
T ss_pred CEEEEEecCCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCcC
Confidence 3689999887778899999876544322 1123445799999999999999999988763
No 322
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=97.92 E-value=0.00011 Score=49.68 Aligned_cols=69 Identities=19% Similarity=0.223 Sum_probs=44.1
Q ss_pred cCCcEEEEEEecCC-CCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccc
Q psy14542 110 VGHRIELHCRVSPK-RLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYR 188 (371)
Q Consensus 110 ~g~~v~l~C~~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g 188 (371)
.++..+|.|.+.++ |....++|.++|..+..... ......+.+|.|. .. +.|.+. ..+ ..
T Consensus 14 ~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~----~~~~~~~~Dgty~---------~~--s~L~v~---~~~-~~ 74 (94)
T cd05767 14 LGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVS----ETRYYPRQDLSFQ---------KF--SYLNFT---PEE-GD 74 (94)
T ss_pred CCCCeEEEEEEEEEECCcCEEEEEECCeEccCceE----EeeeEeCCCCcEE---------EE--EEEEEE---CCC-CC
Confidence 45668999999986 54589999999998754321 1122233444443 22 445444 345 67
Q ss_pred eeEEEeecc
Q psy14542 189 SYQCRGVNK 197 (371)
Q Consensus 189 ~y~C~~~~~ 197 (371)
.|+|.+.+.
T Consensus 75 ~ytC~V~H~ 83 (94)
T cd05767 75 IYSCIVEHW 83 (94)
T ss_pred eEEEEEEeC
Confidence 999999876
No 323
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=97.91 E-value=0.00011 Score=51.47 Aligned_cols=61 Identities=18% Similarity=0.362 Sum_probs=41.5
Q ss_pred EEeccCcEEEEEEecCCCCC-CeeEEEeCCEEEeeC-------Ce-------eEEEEccCCcCCCe-EEEEEEEcCCC
Q psy14542 22 VVDVGHRIELHCRVSPKRLS-SAKAWLKDGLVLRRN-------SD-------EVLVLDRVQREDAG-MYQCHVSADDD 83 (371)
Q Consensus 22 ~~~~G~~v~l~C~~~~~~~~-~~~~W~~~~~~~~~~-------~~-------~~l~i~~~~~~d~G-~Y~C~~~~~~~ 83 (371)
....|+.++|.|.+...+|. ..+.|+|||+.+... .+ ..|.+. +...|.| .|+|.+.+...
T Consensus 17 ~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~~~~p~~d~~ty~~~S~L~~~-~~~~d~~~~ytC~V~H~~l 93 (111)
T cd05772 17 RANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQPNITPEGDSVSYNVTSTVQVK-LTEDDVHSQVTCEVQHRTL 93 (111)
T ss_pred ccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECcccccceeeCCCCCcEEEEEEEEEE-CccccccCceEEEEEeCCC
Confidence 45678899999987777774 689999999886532 11 123333 3444444 59999987653
No 324
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=97.90 E-value=0.00013 Score=49.62 Aligned_cols=70 Identities=19% Similarity=0.281 Sum_probs=44.4
Q ss_pred cceEEEeCCCcEEEeccCcEEEEEEecCCCCC-CeeEEEeCCEEEeeC---------CeeEEE---EccCCcCCCeEEEE
Q psy14542 10 SLSIEMSPSGQVVVDVGHRIELHCRVSPKRLS-SAKAWLKDGLVLRRN---------SDEVLV---LDRVQREDAGMYQC 76 (371)
Q Consensus 10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~-~~~~W~~~~~~~~~~---------~~~~l~---i~~~~~~d~G~Y~C 76 (371)
+|.+.+.+.. .. |+.++|.|.+...+|. ..+.|++++..+... .++++. ...+...+.+.|+|
T Consensus 2 pP~v~v~~~~-~~---~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~~~~~~ytC 77 (93)
T cd07698 2 PPEVRVTRKR-AP---DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPPEDKARYSC 77 (93)
T ss_pred CCEEEEEecC-CC---CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECCCCCCEEEE
Confidence 4666766665 22 7889999977665665 489999998632211 122221 22344457789999
Q ss_pred EEEcCCC
Q psy14542 77 HVSADDD 83 (371)
Q Consensus 77 ~~~~~~~ 83 (371)
.+.+...
T Consensus 78 ~V~H~~~ 84 (93)
T cd07698 78 RVEHSGL 84 (93)
T ss_pred EEEeCCC
Confidence 9987543
No 325
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=97.89 E-value=0.00012 Score=49.59 Aligned_cols=70 Identities=20% Similarity=0.201 Sum_probs=44.5
Q ss_pred ecCCcEEEEEEecCC-CCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCcc
Q psy14542 109 DVGHRIELHCRVSPK-RLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRY 187 (371)
Q Consensus 109 ~~g~~v~l~C~~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~ 187 (371)
..|+.++|.|.+.++ |....++|+++|..+..... ......+.+|.|. +. +.|.+. ..+ .
T Consensus 12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~----~~~~~~~~dgTy~---------~~--s~L~~~---~~~-~ 72 (94)
T cd05766 12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVV----STELIPNGDWTYQ---------IL--VMLETT---PSR-G 72 (94)
T ss_pred cCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCce----ecceEECCCCcEE---------EE--EEEEEc---CCC-C
Confidence 367889999999986 44468999999998765311 1122223334333 22 334333 345 6
Q ss_pred ceeEEEeecc
Q psy14542 188 RSYQCRGVNK 197 (371)
Q Consensus 188 g~y~C~~~~~ 197 (371)
..|+|.+.+.
T Consensus 73 ~~ysC~V~H~ 82 (94)
T cd05766 73 DTYTCVVEHS 82 (94)
T ss_pred CEEEEEEEeC
Confidence 7999999987
No 326
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=97.87 E-value=0.00012 Score=47.51 Aligned_cols=68 Identities=18% Similarity=0.306 Sum_probs=42.8
Q ss_pred EEEEEEecCCCC-CceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEE
Q psy14542 114 IELHCRVSPKRL-SSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQC 192 (371)
Q Consensus 114 v~l~C~~~~~~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C 192 (371)
++|.|.+.++.+ ...++|+++|.++..... ......+.+|.| ... +.|.+.....++ ...|+|
T Consensus 2 ~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~----~~~~~~~~~gt~---------~~~--s~L~v~~~~~~~-~~~~tC 65 (75)
T smart00407 2 ATLVCLVSGFYPPDITVTWLRNGQEVTSGVS----TTDPLKNSDGTY---------FLS--SYLTVSASTWES-GDTYTC 65 (75)
T ss_pred eEEEEEEEeEeCCCCEEEEEECCEECCCCEE----ECceEECCCCCE---------EEE--EEEEEccccCCC-CCEEEE
Confidence 689999998744 379999999987433211 111111233333 222 556666556666 889999
Q ss_pred Eeecc
Q psy14542 193 RGVNK 197 (371)
Q Consensus 193 ~~~~~ 197 (371)
.+.+.
T Consensus 66 ~V~H~ 70 (75)
T smart00407 66 QVTHE 70 (75)
T ss_pred EEEEc
Confidence 99876
No 327
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=97.86 E-value=9.3e-05 Score=52.79 Aligned_cols=63 Identities=29% Similarity=0.373 Sum_probs=45.2
Q ss_pred eecCCeEEEEEEeecC-CCCceEEEeCCc--cc------------ccCCceEEe------cceEEEeccCCCCCeEEEEE
Q psy14542 234 VKKDESVILPCSAQGN-PLPTIKWYKQDS--PV------------EESDRIQRI------GSSLSISHVEESDSGVWNCV 292 (371)
Q Consensus 234 ~~~g~~~~l~C~~~~~-p~~~v~W~~~~~--~~------------~~~~~~~~~------~~~l~i~~~~~~d~G~Y~C~ 292 (371)
+..|++++|.|..... ....+.|++... .+ ...+|+... ..+|.|.+++.+|+|.|.|.
T Consensus 11 ~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~Dsg~Y~C~ 90 (116)
T cd07706 11 VQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLEDSAKYFCA 90 (116)
T ss_pred EcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHHHCEEEEEE
Confidence 8999999999998753 445699997321 10 112444432 23699999999999999999
Q ss_pred EEcC
Q psy14542 293 ANNS 296 (371)
Q Consensus 293 a~n~ 296 (371)
+...
T Consensus 91 ~~~~ 94 (116)
T cd07706 91 LSTL 94 (116)
T ss_pred EECC
Confidence 9853
No 328
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=97.86 E-value=0.00013 Score=50.31 Aligned_cols=64 Identities=19% Similarity=0.303 Sum_probs=45.5
Q ss_pred eecCCeEEEEEEeec-CCCCceEEEeCCccc-------------ccCCceEEe------cceEEEeccCCCCCeEEEEEE
Q psy14542 234 VKKDESVILPCSAQG-NPLPTIKWYKQDSPV-------------EESDRIQRI------GSSLSISHVEESDSGVWNCVA 293 (371)
Q Consensus 234 ~~~g~~~~l~C~~~~-~p~~~v~W~~~~~~~-------------~~~~~~~~~------~~~l~i~~~~~~d~G~Y~C~a 293 (371)
+.+|++++|.|.... .....+.|++....- ....++... ...|.|.+++.+|+|.|.|.+
T Consensus 4 ~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~ 83 (98)
T cd05716 4 GELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWCGV 83 (98)
T ss_pred EEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEEEc
Confidence 788999999999764 345568999854211 111333321 136999999999999999999
Q ss_pred EcCC
Q psy14542 294 NNSE 297 (371)
Q Consensus 294 ~n~~ 297 (371)
....
T Consensus 84 ~~~~ 87 (98)
T cd05716 84 GDDG 87 (98)
T ss_pred ccCC
Confidence 7654
No 329
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=97.85 E-value=2.8e-05 Score=54.11 Aligned_cols=58 Identities=31% Similarity=0.603 Sum_probs=41.2
Q ss_pred EEeccCcEEEEEEecCCCCCCeeEEEeC--C---EE--Ee---e------------C---------CeeEEEEccCCcCC
Q psy14542 22 VVDVGHRIELHCRVSPKRLSSAKAWLKD--G---LV--LR---R------------N---------SDEVLVLDRVQRED 70 (371)
Q Consensus 22 ~~~~G~~v~l~C~~~~~~~~~~~~W~~~--~---~~--~~---~------------~---------~~~~l~i~~~~~~d 70 (371)
.+.+|++|+|.|..... ....+.|||. + .. +. . . ...+|.|.+++.+|
T Consensus 2 ~v~~G~~vtL~C~~~~~-~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~sD 80 (104)
T cd05720 2 DAELGQKVELKCEVLNS-SPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKEN 80 (104)
T ss_pred cccCCCeEEEEEEecCC-CCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHHH
Confidence 36799999999965433 3456899982 2 10 10 0 0 44579999999999
Q ss_pred CeEEEEEEEc
Q psy14542 71 AGMYQCHVSA 80 (371)
Q Consensus 71 ~G~Y~C~~~~ 80 (371)
+|.|.|.+..
T Consensus 81 sgtY~Ca~~~ 90 (104)
T cd05720 81 EGYYFCSVAS 90 (104)
T ss_pred CEEEEEEEcc
Confidence 9999999863
No 330
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=97.84 E-value=0.00012 Score=46.58 Aligned_cols=53 Identities=30% Similarity=0.556 Sum_probs=41.6
Q ss_pred EEEEEEecCCCCCCeeEEEeCCEEEeeC-------------CeeEEEEccCCcCCCeEEEEEEEcCC
Q psy14542 29 IELHCRVSPKRLSSAKAWLKDGLVLRRN-------------SDEVLVLDRVQREDAGMYQCHVSADD 82 (371)
Q Consensus 29 v~l~C~~~~~~~~~~~~W~~~~~~~~~~-------------~~~~l~i~~~~~~d~G~Y~C~~~~~~ 82 (371)
+.|.|.... .+...+.|++++...... ....|.|.+++..|.|.|.|.+.+..
T Consensus 1 ~~l~C~~~~-~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~ 66 (74)
T cd00096 1 VTLTCLASG-PPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA 66 (74)
T ss_pred CEEEEEecC-CCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence 468996554 677889999976653211 66789999999999999999998765
No 331
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=97.83 E-value=7.6e-05 Score=50.53 Aligned_cols=61 Identities=21% Similarity=0.359 Sum_probs=39.4
Q ss_pred EeccCcEEEEEEecCCCCC-CeeEEEeCCEEEeeC---------------CeeEEEEccCCcCCCeEEEEEEEcCCC
Q psy14542 23 VDVGHRIELHCRVSPKRLS-SAKAWLKDGLVLRRN---------------SDEVLVLDRVQREDAGMYQCHVSADDD 83 (371)
Q Consensus 23 ~~~G~~v~l~C~~~~~~~~-~~~~W~~~~~~~~~~---------------~~~~l~i~~~~~~d~G~Y~C~~~~~~~ 83 (371)
...++.++|.|.+...+|. ..+.|++||..+... ....|.+..-...+...|+|.+.+...
T Consensus 11 ~~~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~~ 87 (94)
T cd05847 11 TGTSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQGT 87 (94)
T ss_pred cCCCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECCe
Confidence 3356779999977776664 679999999876322 122333433322345689999987543
No 332
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=97.82 E-value=0.00016 Score=48.73 Aligned_cols=69 Identities=16% Similarity=0.227 Sum_probs=44.1
Q ss_pred ecCCcEEEEEEecCC-CCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCcc
Q psy14542 109 DVGHRIELHCRVSPK-RLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRY 187 (371)
Q Consensus 109 ~~g~~v~l~C~~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~ 187 (371)
..|...+|.|.+.++ |....++|.++|..+. ... ......+.+|.|. +. +.|.+. ..+ .
T Consensus 13 ~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~-~~~----~~~~~p~~d~tyq---------~~--s~l~~~---~~~-~ 72 (93)
T cd05770 13 ENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP-KVE----QSDLSFSKDWTFY---------LL--KSTEFT---PTK-G 72 (93)
T ss_pred cCCCceEEEEEEEEEeCCCCEEEEEECCEECC-CcE----ECcEEECCCCCEE---------EE--EEEEEC---CCC-C
Confidence 346677999999986 5568899999999876 321 1222233444443 22 333333 455 7
Q ss_pred ceeEEEeecc
Q psy14542 188 RSYQCRGVNK 197 (371)
Q Consensus 188 g~y~C~~~~~ 197 (371)
..|.|.+.+.
T Consensus 73 ~~ysC~V~H~ 82 (93)
T cd05770 73 DEYACRVRHN 82 (93)
T ss_pred CeEEEEEEEC
Confidence 7899999876
No 333
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=97.81 E-value=0.071 Score=56.70 Aligned_cols=239 Identities=10% Similarity=0.130 Sum_probs=134.3
Q ss_pred EEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeCCeeEEEEccCCcCCCeEEEEEE--EcCCCCeEEEEEEEEecceee
Q psy14542 22 VVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHV--SADDDSAQMSAQVILGGELVE 99 (371)
Q Consensus 22 ~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~--~~~~~~~~~~~~l~v~~~~~~ 99 (371)
.+..|..+.|.-++..+. ...+.|..++..-..+.... .+..++|.|...+ .|..+....+..+.|.+....
T Consensus 1796 ~~~ag~~v~F~a~vstGs-nVsw~W~f~~g~s~~gk~v~-----~Tf~~aG~ytV~L~AsN~vs~~~~s~~~~VQe~I~~ 1869 (2740)
T TIGR00864 1796 FFAADSSVCFQGELATGT-NVSWCWAIDGGSSKMGKHAC-----MTFPDAGTFAIRLNASNAVSGKSASREFFAEEPIFG 1869 (2740)
T ss_pred ceecCcEEEEEEEccCCC-eeEEEEEeCCCCccccceeE-----EecCCCeEEEEEEEEEcccCcceeeeeEEEEEecce
Confidence 466778888877655554 34688877654322111111 4667899998775 477777777777777743333
Q ss_pred EecCC-ceeeecCCcEEEEEEecCCCCCceEEEeeCCEE-eeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEE
Q psy14542 100 IASSN-QVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLV-LRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELI 177 (371)
Q Consensus 100 ~~~~~-~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~-~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~ 177 (371)
+.... ...+..|+.++|.+.+..... ..+.|...+.. ...... ..+
T Consensus 1870 L~L~as~~~~~~n~~v~fsa~l~~GS~-Vtf~w~fGdgs~~~~t~~------------------------------~t~- 1917 (2740)
T TIGR00864 1870 LELKASKKIAAIGEKVEFQILLAAGSA-VNFRLQIGGAAPEVLQPG------------------------------PRF- 1917 (2740)
T ss_pred EEEecccccccCCCEEEEEEEecCCCc-eEEEEEeCCCCceeecCC------------------------------CeE-
Confidence 33322 233478999999999877665 89999875432 111000 000
Q ss_pred EEEeecCCccceeEEEee--ccccceeeeeeccceeeeecchhccccceeeeee-eeeeeecCCeEEEEEEeecCCCCce
Q psy14542 178 IHQVDESDRYRSYQCRGV--NKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKH-RILNVKKDESVILPCSAQGNPLPTI 254 (371)
Q Consensus 178 i~~~~~~d~~g~y~C~~~--~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~-~~~~~~~g~~~~l~C~~~~~p~~~v 254 (371)
.+ .... .|.|...+. |. .+...... .+.|.++. ..+.+... ... ...|+..++.-.+....+..+
T Consensus 1918 ~H--sY~~-~G~Y~VtV~A~N~-Vs~~~a~~---~V~Vle~V----~gL~I~~~c~~~-~~~g~~~tF~A~v~~g~~V~f 1985 (2740)
T TIGR00864 1918 SH--SFPR-VDDHMVNLRAKNE-VSCAQANL---HIEVLEAV----RGLQIPDCCAAG-IATGEEKNFTANVQRGKPVAF 1985 (2740)
T ss_pred Ee--ecCC-CCcEEEEEEEEec-cceeeeeE---EEEEEEec----cceEecCCcccc-eecCceEEEEEEEecCCceEE
Confidence 00 0111 455555443 33 22322222 44443210 11111111 111 577889999988876666789
Q ss_pred EEEeCCcccccCCceEEecceEEEeccCCCCCeEEEE--EEEcCCCCceeEEEEEEecCcc
Q psy14542 255 KWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNC--VANNSEGQDKMQLFIQYAHGKY 313 (371)
Q Consensus 255 ~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C--~a~n~~g~~~~~~~l~v~~~p~ 313 (371)
.|+.+-..+.....+...+..+... ....|.|+. +|.|..|....+..+.|+.+..
T Consensus 1986 ~W~f~~~~~~g~~~~~~~G~~vty~---~~~~G~~~I~v~A~N~l~s~n~t~~i~VQ~~i~ 2043 (2740)
T TIGR00864 1986 AWTFDLHHLHGDSLVIHMGKDVSYT---AEAAGLLEIQLGAFNALGAENITLQLEAQDALM 2043 (2740)
T ss_pred EEEeeecccCCCcceeecCCceEEc---cCCCcEEEEEEEEEcccCcccccEEEEEEehee
Confidence 9987644443333322222233322 235788776 4678888887777788877665
No 334
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=97.79 E-value=0.00013 Score=47.27 Aligned_cols=55 Identities=22% Similarity=0.413 Sum_probs=37.2
Q ss_pred cEEEEEEecCCCCC-CeeEEEeCCEEEeeC---------------CeeEEEEccCCcCCCeEEEEEEEcCC
Q psy14542 28 RIELHCRVSPKRLS-SAKAWLKDGLVLRRN---------------SDEVLVLDRVQREDAGMYQCHVSADD 82 (371)
Q Consensus 28 ~v~l~C~~~~~~~~-~~~~W~~~~~~~~~~---------------~~~~l~i~~~~~~d~G~Y~C~~~~~~ 82 (371)
.++|.|.+...+|. ..+.|+|||+.+... ....|.|.....++...|+|.+.+..
T Consensus 1 ~~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~~ 71 (75)
T smart00407 1 KATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHEG 71 (75)
T ss_pred CeEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEcC
Confidence 36899977766666 589999999863322 23345555445556679999997654
No 335
>PHA03270 envelope glycoprotein C; Provisional
Probab=97.79 E-value=0.0014 Score=55.49 Aligned_cols=81 Identities=14% Similarity=0.169 Sum_probs=59.4
Q ss_pred ceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecCCCC-
Q psy14542 174 GELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLP- 252 (371)
Q Consensus 174 ~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~- 252 (371)
..|.|..++... +|.|+-...+. .+...... ...+... .+|.+...+.. +..|+...-+|.+..+.++
T Consensus 182 ~~L~I~slt~aT-eGvY~Wr~~~~-~~~~~~~~-~VtV~~y-----r~Psvsv~~~P---vL~Ge~Y~AtC~va~YYPp~ 250 (466)
T PHA03270 182 QRLVIQELTLAT-QGMYYWARGPA-DRPHRYGT-WTRVRMF-----RRPSLSIRPHA---VLEGEPFGATCVAANYYPGD 250 (466)
T ss_pred ceEEEEEccccc-ceEEEEEEecC-CCceeeee-EEEEEEe-----cCCcccccCCc---cccCCCceEEEEeeeecCCC
Confidence 469999999999 99999997775 33222111 1155555 67777766655 8899999999999875443
Q ss_pred --ceEEEeCCccccc
Q psy14542 253 --TIKWYKQDSPVEE 265 (371)
Q Consensus 253 --~v~W~~~~~~~~~ 265 (371)
.+.|++|+.++..
T Consensus 251 Sv~lrWf~ng~~V~~ 265 (466)
T PHA03270 251 RAAFRWFEGGDEVFA 265 (466)
T ss_pred ceEEEEEeCCccccC
Confidence 4999999998754
No 336
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=97.78 E-value=0.0002 Score=48.20 Aligned_cols=70 Identities=17% Similarity=0.225 Sum_probs=44.1
Q ss_pred ceEEEeCCCcEEEeccCcEEEEEEecCCCC-CCeeEEEeCCEEEeeC---------CeeEEEEc---cCCcCCCeEEEEE
Q psy14542 11 LSIEMSPSGQVVVDVGHRIELHCRVSPKRL-SSAKAWLKDGLVLRRN---------SDEVLVLD---RVQREDAGMYQCH 77 (371)
Q Consensus 11 ~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~-~~~~~W~~~~~~~~~~---------~~~~l~i~---~~~~~d~G~Y~C~ 77 (371)
|.+.+.... .+..|+..+|.|.+...+| ...+.|+|||..+. . .+.++.+. .+...+...|.|.
T Consensus 2 P~v~v~~~~--~~~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~-~~~~~~~~p~~d~tyq~~s~l~~~~~~~~~ysC~ 78 (93)
T cd05770 2 PKVQVYSRF--PAENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP-KVEQSDLSFSKDWTFYLLKSTEFTPTKGDEYACR 78 (93)
T ss_pred CEEEEEecC--CCcCCCceEEEEEEEEEeCCCCEEEEEECCEECC-CcEECcEEECCCCCEEEEEEEEECCCCCCeEEEE
Confidence 445554332 2345777899997776565 55799999999865 3 22233322 2345566689999
Q ss_pred EEcCCC
Q psy14542 78 VSADDD 83 (371)
Q Consensus 78 ~~~~~~ 83 (371)
+...+.
T Consensus 79 V~H~~l 84 (93)
T cd05770 79 VRHNSM 84 (93)
T ss_pred EEECCC
Confidence 987543
No 337
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=97.78 E-value=0.00013 Score=49.40 Aligned_cols=65 Identities=14% Similarity=0.269 Sum_probs=42.3
Q ss_pred cCCeEEEEEEeec-CCC-CceEEEeCCcccccCCc----eEEe------cceEEEeccCCCCCeEEEEEEEcCCCCc
Q psy14542 236 KDESVILPCSAQG-NPL-PTIKWYKQDSPVEESDR----IQRI------GSSLSISHVEESDSGVWNCVANNSEGQD 300 (371)
Q Consensus 236 ~g~~~~l~C~~~~-~p~-~~v~W~~~~~~~~~~~~----~~~~------~~~l~i~~~~~~d~G~Y~C~a~n~~g~~ 300 (371)
.++.++|.|.+.| +|. .+++|+++|..+..+.. .... .+.|.+......+...|+|++.+.....
T Consensus 13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~~~~ 89 (94)
T cd05847 13 TSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQGTTF 89 (94)
T ss_pred CCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECCeee
Confidence 3456899999998 454 56899999987633211 1111 2345555444556789999998866543
No 338
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=97.77 E-value=0.051 Score=57.70 Aligned_cols=269 Identities=10% Similarity=0.030 Sum_probs=146.5
Q ss_pred EEeccCcEEEEEEecCCCCCCeeEEEeCC--E---EEeeCCeeEEEEccCCcCCCeEEEEEEE--cCCCCeEEEEEEEEe
Q psy14542 22 VVDVGHRIELHCRVSPKRLSSAKAWLKDG--L---VLRRNSDEVLVLDRVQREDAGMYQCHVS--ADDDSAQMSAQVILG 94 (371)
Q Consensus 22 ~~~~G~~v~l~C~~~~~~~~~~~~W~~~~--~---~~~~~~~~~l~i~~~~~~d~G~Y~C~~~--~~~~~~~~~~~l~v~ 94 (371)
.+..|..+.|.-....+ ....+.|...+ . .......... .++..+.|.|...+. |..|.......+.|.
T Consensus 1619 ~~~t~~~v~l~~~~~~G-TnvsysW~~~~~n~~dg~~~~~tGk~~---~vt~~~pG~Y~VtL~aSN~vG~~t~s~~i~v~ 1694 (2740)
T TIGR00864 1619 YFETNHTVQFHAGFKDG-TNLSFSWNAILDNEPDGPAFAGSGKGA---KLNPLEAGPCDIFLQAANLLGQATADCTIDFL 1694 (2740)
T ss_pred eeccCCEEEeeeccCCC-CeeEEEEEEecCCCCCCccccccCcee---EEecCCCceEEEEEEEeecccceeeEEEEEEE
Confidence 45556666666544333 34568885511 1 1111111112 233467899977654 777777777777776
Q ss_pred cceeeEecC-CceeeecCCcEEEEEEecCCCCCceEEEeeCCEE-eeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEec
Q psy14542 95 GELVEIASS-NQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLV-LRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLS 172 (371)
Q Consensus 95 ~~~~~~~~~-~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~-~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~ 172 (371)
+....+... ....+..|+.+.|.-....... ..++|...+.. ......
T Consensus 1695 epi~~L~L~aS~~~aavn~~V~fs~~lt~GS~-vty~W~~gdG~s~~~s~p----------------------------- 1744 (2740)
T TIGR00864 1695 EPAGNLMLQASDNPAAVNALINLSAELAEGSG-LQYRWFLEEGDDLETSEP----------------------------- 1744 (2740)
T ss_pred EEcCceEEeccCCcccCCCeEEEEEEecCCCC-cEEEEEECCCCCcccCCC-----------------------------
Confidence 433333222 2233367899999877666555 79999875532 111110
Q ss_pred cceEEEEEeecCCccceeEEEee--ccccceeeeeeccceeeeecchhccccceeeeee-eeeeeecCCeEEEEEEeecC
Q psy14542 173 SGELIIHQVDESDRYRSYQCRGV--NKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKH-RILNVKKDESVILPCSAQGN 249 (371)
Q Consensus 173 ~~~l~i~~~~~~d~~g~y~C~~~--~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~-~~~~~~~g~~~~l~C~~~~~ 249 (371)
.+ .-+... .|.|...+. |. .+....+. .+.|.++. ....+..... ....+..|..+.|.-.+...
T Consensus 1745 --~~---tHtf~~-~G~y~VtVta~N~-vss~~~s~---~V~VqepV--~GL~i~~~~~~~~~~~~ag~~v~F~a~vstG 1812 (2740)
T TIGR00864 1745 --FM---SHSFPS-AGLHLVTMKAFNE-LGSANASE---EVDVQEPI--SGLKIRAADAGEQNFFAADSSVCFQGELATG 1812 (2740)
T ss_pred --ce---EEEccC-CceEEEEEEEEcc-ccccceeE---EEEEEecc--ccceEecCCCCcccceecCcEEEEEEEccCC
Confidence 00 001222 667766544 44 34333333 56665332 1112211111 11015567777777665544
Q ss_pred CCCceEEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEE--EEcCCCCceeEEEEEEecCcccccccceEEEEeee
Q psy14542 250 PLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCV--ANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVD 327 (371)
Q Consensus 250 p~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~--a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~~ 327 (371)
....+.|..++..-..+.. .. ....+.|.|+.. |.|..+....+..+.|+++... +.+ .
T Consensus 1813 snVsw~W~f~~g~s~~gk~-------v~---~Tf~~aG~ytV~L~AsN~vs~~~~s~~~~VQe~I~~------L~L---~ 1873 (2740)
T TIGR00864 1813 TNVSWCWAIDGGSSKMGKH-------AC---MTFPDAGTFAIRLNASNAVSGKSASREFFAEEPIFG------LEL---K 1873 (2740)
T ss_pred CeeEEEEEeCCCCccccce-------eE---EecCCCeEEEEEEEEEcccCcceeeeeEEEEEecce------EEE---e
Confidence 4567889887653222211 11 345678999875 5799999888999999988861 111 1
Q ss_pred eccccccccccccccceeeeeecCCeEEEeeeeecCCCCcccc
Q psy14542 328 EKNKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKY 370 (371)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W 370 (371)
. ... .+..|+.++|.+.+...+...+.|
T Consensus 1874 a-s~~--------------~~~~n~~v~fsa~l~~GS~Vtf~w 1901 (2740)
T TIGR00864 1874 A-SKK--------------IAAIGEKVEFQILLAAGSAVNFRL 1901 (2740)
T ss_pred c-ccc--------------cccCCCEEEEEEEecCCCceEEEE
Confidence 1 111 456788888888777655555555
No 339
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=97.77 E-value=0.0003 Score=47.56 Aligned_cols=68 Identities=21% Similarity=0.298 Sum_probs=43.3
Q ss_pred cceEEEeCCCcEEEeccCcEEEEEEecCCCC-CCeeEEEeCCEEEeeC---------C------eeEEEEccCCcCCCeE
Q psy14542 10 SLSIEMSPSGQVVVDVGHRIELHCRVSPKRL-SSAKAWLKDGLVLRRN---------S------DEVLVLDRVQREDAGM 73 (371)
Q Consensus 10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~-~~~~~W~~~~~~~~~~---------~------~~~l~i~~~~~~d~G~ 73 (371)
+|.+.+.+.. ....|+..+|.|.+...+| ...+.|.+||..+... . ...|.+. ..+...
T Consensus 1 ~P~V~v~~~~--~~~~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v~---~~~~~~ 75 (94)
T cd05767 1 PPEVTVFSLK--PVELGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNFT---PEEGDI 75 (94)
T ss_pred CCEEEEEeCC--cccCCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEEE---CCCCCe
Confidence 3555555554 2345677899997777666 4579999999886542 1 2223333 344558
Q ss_pred EEEEEEcCC
Q psy14542 74 YQCHVSADD 82 (371)
Q Consensus 74 Y~C~~~~~~ 82 (371)
|+|.+....
T Consensus 76 ytC~V~H~~ 84 (94)
T cd05767 76 YSCIVEHWG 84 (94)
T ss_pred EEEEEEeCC
Confidence 888887654
No 340
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=97.77 E-value=0.0003 Score=49.29 Aligned_cols=85 Identities=18% Similarity=0.305 Sum_probs=46.4
Q ss_pred eecCCcEEEEEEecCCCCCceEEEeeCCEEee-eCCeeEEEEcccCcCCCeeEEEEEeCCceeEe-----ccceEEEEEe
Q psy14542 108 VDVGHRIELHCRVSPKRLSSAKAWLKDGLVLR-RNSDEVLVLDRVQREDAGMYQCHIEDGKYHML-----SSGELIIHQV 181 (371)
Q Consensus 108 ~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~-~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~-----~~~~l~i~~~ 181 (371)
+.+|++++|.|.+........+.|++...... ....+.+...... ...|.-...+.++... ....|+|.++
T Consensus 3 v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~---~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~ 79 (107)
T cd07700 3 VQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLG---GATYGEEVSQEKFSIRVTSDSSRYRLHINRV 79 (107)
T ss_pred EcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCC---CeEEccccccCcEEEEEECCCCEEEEEECCC
Confidence 46899999999986543325899998433211 1111112111110 0000000011223221 1246999999
Q ss_pred ecCCccceeEEEeec
Q psy14542 182 DESDRYRSYQCRGVN 196 (371)
Q Consensus 182 ~~~d~~g~y~C~~~~ 196 (371)
+.+| +|.|.|....
T Consensus 80 ~~~D-sg~YyCa~~~ 93 (107)
T cd07700 80 KPED-SGTYFCMTVG 93 (107)
T ss_pred CHHH-CEEEEEeEcC
Confidence 9999 9999999753
No 341
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.76 E-value=0.00013 Score=44.75 Aligned_cols=51 Identities=20% Similarity=0.473 Sum_probs=38.3
Q ss_pred ecCCeEEEEEEeecCCCCceEEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEc
Q psy14542 235 KKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANN 295 (371)
Q Consensus 235 ~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n 295 (371)
...+.+.|+|.+ ..+|.|++ |..+.... +.+|.+.....+-.|.|.|.+++
T Consensus 4 e~~~~V~L~C~~----~tsi~W~k-G~~~~~~~-----~~tlnLGs~~~DPRG~Y~C~~s~ 54 (69)
T cd07691 4 ESEGKVFLKCNG----ATNITWKK-GKEILEVS-----NTLLDLGSRINDPRGTYSCKESE 54 (69)
T ss_pred ecCceEEEEecC----CCcEEEec-Cccccccc-----ccEEeccCcccCCCcceEecCcc
Confidence 345679999965 25699999 55443321 56789999999999999999877
No 342
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=97.76 E-value=0.00019 Score=48.40 Aligned_cols=71 Identities=15% Similarity=0.272 Sum_probs=49.3
Q ss_pred EEEeCCCcEEEeccCcEEE-EEEecCCCCCCeeEEEeCCEEEe----eC-------CeeEEEEccCCcCCCeEEEEEEEc
Q psy14542 13 IEMSPSGQVVVDVGHRIEL-HCRVSPKRLSSAKAWLKDGLVLR----RN-------SDEVLVLDRVQREDAGMYQCHVSA 80 (371)
Q Consensus 13 ~~~~p~~~~~~~~G~~v~l-~C~~~~~~~~~~~~W~~~~~~~~----~~-------~~~~l~i~~~~~~d~G~Y~C~~~~ 80 (371)
+.+.+.....+.+|+.+.+ .|....+.|.+.|.|+.+..... .. -.+.|.+...+..|.-.++|.+.+
T Consensus 3 ~~~~~~~~~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~~~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H 82 (97)
T cd07704 3 VSLSPGPSLLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTSESHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSH 82 (97)
T ss_pred cccCCCCeeEeecCcceeEEEEEccCCccCCEeEEeCCCCCccceeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeC
Confidence 4456666578889999999 99888999999999998622111 00 233455554455555599999987
Q ss_pred CCC
Q psy14542 81 DDD 83 (371)
Q Consensus 81 ~~~ 83 (371)
..-
T Consensus 83 ~al 85 (97)
T cd07704 83 PAL 85 (97)
T ss_pred ccc
Confidence 654
No 343
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.75 E-value=9.3e-05 Score=51.06 Aligned_cols=66 Identities=18% Similarity=0.371 Sum_probs=41.9
Q ss_pred eecCCeEEEEEEeecCCC--CceEEEeCCcccccCCc----eEEe---cc------eEEEeccCCCCCeEEEEEEEcCCC
Q psy14542 234 VKKDESVILPCSAQGNPL--PTIKWYKQDSPVEESDR----IQRI---GS------SLSISHVEESDSGVWNCVANNSEG 298 (371)
Q Consensus 234 ~~~g~~~~l~C~~~~~p~--~~v~W~~~~~~~~~~~~----~~~~---~~------~l~i~~~~~~d~G~Y~C~a~n~~g 298 (371)
+..+..++|.|.+.|+.+ ..++|+++|..+..... .... ++ .|.+..-...+...|+|++.+...
T Consensus 13 ~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~V~H~~l 92 (102)
T cd05768 13 LSLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCVVGHEAL 92 (102)
T ss_pred hCcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEEeEeCCC
Confidence 445678999999999544 35799999987653311 0011 23 355544444556789999987654
Q ss_pred C
Q psy14542 299 Q 299 (371)
Q Consensus 299 ~ 299 (371)
.
T Consensus 93 ~ 93 (102)
T cd05768 93 P 93 (102)
T ss_pred C
Confidence 3
No 344
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=97.73 E-value=0.00036 Score=47.38 Aligned_cols=63 Identities=21% Similarity=0.378 Sum_probs=39.0
Q ss_pred CCeEEEEEEeecC-CCC-ceEEEeCCcccccCC---ceE-EecceEE---EeccCCCCCeEEEEEEEcCCCC
Q psy14542 237 DESVILPCSAQGN-PLP-TIKWYKQDSPVEESD---RIQ-RIGSSLS---ISHVEESDSGVWNCVANNSEGQ 299 (371)
Q Consensus 237 g~~~~l~C~~~~~-p~~-~v~W~~~~~~~~~~~---~~~-~~~~~l~---i~~~~~~d~G~Y~C~a~n~~g~ 299 (371)
++.++|.|.+.|+ |.. .++|.++|..+..+. ... ..++++. .-.+...+.+.|+|++.+....
T Consensus 14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~~~~~~ytC~V~H~~~~ 85 (93)
T cd07698 14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPPEDKARYSCRVEHSGLK 85 (93)
T ss_pred CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECCCCCCEEEEEEEeCCCC
Confidence 6789999999995 443 799999986332221 111 1122221 1223345789999999876543
No 345
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=97.73 E-value=0.00036 Score=49.92 Aligned_cols=85 Identities=19% Similarity=0.218 Sum_probs=47.5
Q ss_pred ceeeecCCcEEEEEEecCCC-----CCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEe-----ccc
Q psy14542 105 QVVVDVGHRIELHCRVSPKR-----LSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHML-----SSG 174 (371)
Q Consensus 105 ~~~~~~g~~v~l~C~~~~~~-----~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~-----~~~ 174 (371)
...+.+|+.++|.|...... ....+.|++....-.. ....+...... .....| .+++.+. .+.
T Consensus 8 ~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~-~~~~~~~~~~~-~~~~~f-----~gR~~~~~~~~~~~~ 80 (119)
T cd05712 8 SVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKN-RPPVATNNRSR-LVHEST-----RGRFRLLGDLGKKNC 80 (119)
T ss_pred EEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCC-CCcEEEcCCCc-cccccc-----cccEEEecCCCCCEE
Confidence 34448999999999875322 1256999985421100 01111111111 010111 1233321 235
Q ss_pred eEEEEEeecCCccceeEEEeecc
Q psy14542 175 ELIIHQVDESDRYRSYQCRGVNK 197 (371)
Q Consensus 175 ~l~i~~~~~~d~~g~y~C~~~~~ 197 (371)
.|.|.+++.+| +|.|.|.+...
T Consensus 81 sL~I~~l~~~D-sg~Y~C~~~~~ 102 (119)
T cd05712 81 SLLISDAQPED-SGKYFFRVELG 102 (119)
T ss_pred EEEEccCChhh-CeEEEEEEEcC
Confidence 79999999999 99999988654
No 346
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=97.73 E-value=0.00017 Score=50.75 Aligned_cols=70 Identities=21% Similarity=0.379 Sum_probs=45.1
Q ss_pred eecCCeEEEEEEeecC-CC-CceEEEeCCcccccCCc---eE--------EecceEEEeccCCCC-CeEEEEEEEcCCCC
Q psy14542 234 VKKDESVILPCSAQGN-PL-PTIKWYKQDSPVEESDR---IQ--------RIGSSLSISHVEESD-SGVWNCVANNSEGQ 299 (371)
Q Consensus 234 ~~~g~~~~l~C~~~~~-p~-~~v~W~~~~~~~~~~~~---~~--------~~~~~l~i~~~~~~d-~G~Y~C~a~n~~g~ 299 (371)
...++.++|.|.+.++ |. .+++|++||..+..+.. .. ...+.|.+......+ ...|+|.+.+....
T Consensus 15 ~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~~ytC~V~H~g~~ 94 (115)
T cd05769 15 IRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPRNTFTCIVQFYGGT 94 (115)
T ss_pred hccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCCCeEEEEEEEeCCc
Confidence 3356678999999984 54 47999999987654321 01 112345555554444 56999999987665
Q ss_pred ceeE
Q psy14542 300 DKMQ 303 (371)
Q Consensus 300 ~~~~ 303 (371)
....
T Consensus 95 ~~~~ 98 (115)
T cd05769 95 DTDK 98 (115)
T ss_pred ccee
Confidence 5433
No 347
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.72 E-value=9.4e-05 Score=45.08 Aligned_cols=52 Identities=23% Similarity=0.382 Sum_probs=37.1
Q ss_pred EeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeCCeeEEEEccCCcCCCeEEEEEEEc
Q psy14542 23 VDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHVSA 80 (371)
Q Consensus 23 ~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~ 80 (371)
-..|.+|+|+|... . ..+.|++++..+.. ....+.+.+-. ++.|.|.|.+.+
T Consensus 4 sisGTtVtlTCP~~---~-~~i~W~~n~~~~~g-~~~~~~~~~~~-e~~G~Y~C~~~~ 55 (65)
T cd07692 4 SISGTTVTVTCPLS---G-DDIKWKKNDQVSQG-SDEKYLSLNHF-SSSGYYHCTADN 55 (65)
T ss_pred EEeccEEEEECCCC---C-CCceEEeCCccCCC-CCceEEeeccC-CCCceEEEEeCC
Confidence 34689999999322 1 22999999966654 33456666666 889999999953
No 348
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.71 E-value=0.0001 Score=50.89 Aligned_cols=43 Identities=23% Similarity=0.322 Sum_probs=30.1
Q ss_pred eEEEeCCCcEEEeccCcEEEEEEecCCCCC-CeeEEEeCCEEEe
Q psy14542 12 SIEMSPSGQVVVDVGHRIELHCRVSPKRLS-SAKAWLKDGLVLR 54 (371)
Q Consensus 12 ~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~-~~~~W~~~~~~~~ 54 (371)
.+.+.|.....+..|+.++|.|.+...+|. ..+.|++||..+.
T Consensus 2 ~v~l~~p~~~~~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~ 45 (102)
T cd05768 2 SVYVLPPPSEELSLQETATLTCLVKGFSPSDIFVKWLQNGQPLS 45 (102)
T ss_pred eEEEeCcChHHhCcCCceEEEEEEeeEeCCCCEEEEEECCEECC
Confidence 445555542345567899999977766664 3689999998764
No 349
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.70 E-value=0.00027 Score=43.10 Aligned_cols=51 Identities=29% Similarity=0.508 Sum_probs=36.9
Q ss_pred ecCCeEEEEEEeecCCCCceEEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEc
Q psy14542 235 KKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANN 295 (371)
Q Consensus 235 ~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n 295 (371)
..|.+|+|+|...+. .+.|.+++..+... +..+.+.+-. ++.|.|.|.+.+
T Consensus 5 isGTtVtlTCP~~~~---~i~W~~n~~~~~g~------~~~~~~~~~~-e~~G~Y~C~~~~ 55 (65)
T cd07692 5 ISGTTVTVTCPLSGD---DIKWKKNDQVSQGS------DEKYLSLNHF-SSSGYYHCTADN 55 (65)
T ss_pred EeccEEEEECCCCCC---CceEEeCCccCCCC------CceEEeeccC-CCCceEEEEeCC
Confidence 468999999975522 39999998655542 2345555555 889999999954
No 350
>PHA03273 envelope glycoprotein C; Provisional
Probab=97.68 E-value=0.002 Score=55.28 Aligned_cols=113 Identities=20% Similarity=0.161 Sum_probs=71.5
Q ss_pred eEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecCCCC--
Q psy14542 175 ELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLP-- 252 (371)
Q Consensus 175 ~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-- 252 (371)
.|+|..++..+ +|.|+-...+. .+...... ...+... .+|.+...+.. +..|+...-.|.+..+-++
T Consensus 199 ~LtI~sltaaT-eGvYtWr~~~~-n~t~~~~~-~VtV~~y-----r~Psvsv~~~P---vL~Ge~y~A~C~aa~YYPp~S 267 (486)
T PHA03273 199 PLTIKSVDWRT-AGVYVWSLYAK-NGTLVNST-SVTVSTY-----NAPLVDLSVHP---SLKGENYRAVCVVASYFPHSS 267 (486)
T ss_pred ceEEEecchhh-ceEEEEEEecC-CCceeeee-EEEEEEe-----cCCcccccCCc---cccCCCceEEEEeeeecCCCc
Confidence 49999999999 99999876554 33222222 1134445 67777766654 8899999999999875443
Q ss_pred -ceEEEeCCcccccCCce----E-E------ecceEEEeccC-CCCCeEEEEEEEcCCC
Q psy14542 253 -TIKWYKQDSPVEESDRI----Q-R------IGSSLSISHVE-ESDSGVWNCVANNSEG 298 (371)
Q Consensus 253 -~v~W~~~~~~~~~~~~~----~-~------~~~~l~i~~~~-~~d~G~Y~C~a~n~~g 298 (371)
.+.|++|+.++...... . . ..++|.+.... .+.--+.+|.+.-...
T Consensus 268 v~~rWf~dg~~V~~~~~~~~~~~~~~~gl~T~vStlt~~~~~~~~~PP~lrC~v~W~rd 326 (486)
T PHA03273 268 VKLRWYKNAKEVDFTKYVTNASSVWVDGLITRISTLSIPVDPDEEYTPSLRCSIEWYRD 326 (486)
T ss_pred eEEEEEeCCeeccccccceeeEEEecCCceEEEEEEeccCcccCCCCCCceEEEEEccC
Confidence 59999999988732211 1 1 11234444322 2233478898764433
No 351
>PHA03269 envelope glycoprotein C; Provisional
Probab=97.68 E-value=0.0012 Score=56.72 Aligned_cols=82 Identities=13% Similarity=0.076 Sum_probs=58.4
Q ss_pred ceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecCCCC-
Q psy14542 174 GELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLP- 252 (371)
Q Consensus 174 ~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~- 252 (371)
-.|.|.+++..+ +|.|.-.+.+...+...... ...+.+. ..|.+...+.. +..|+...-+|.+..+.++
T Consensus 289 ~pL~I~sltaAT-eGvY~Wrv~~~~n~t~~~~~-~VtV~~y-----r~PsVsV~p~P---VL~Ge~YkAtC~vA~YYPp~ 358 (566)
T PHA03269 289 FSLHILSLDAST-EGTYIWRVIHTANKNVINEH-HITVMSY-----KRPNITVIGDP---VLLGNPYAAYCKVNKYYPPH 358 (566)
T ss_pred cceEEeeccccc-CceEEEEEecCCCCceeeee-EEEEEEe-----cCCCccccCCc---cccCCCceEEEEeeeecCCC
Confidence 359999999999 99999887654222222222 1255555 67766666554 8899999999999875443
Q ss_pred --ceEEEeCCccccc
Q psy14542 253 --TIKWYKQDSPVEE 265 (371)
Q Consensus 253 --~v~W~~~~~~~~~ 265 (371)
.+.|++|++++..
T Consensus 359 SvrlrWf~ng~~V~~ 373 (566)
T PHA03269 359 SVIVKWTSNFGNIGK 373 (566)
T ss_pred ceEEEEEeCCcccCc
Confidence 4999999988774
No 352
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.65 E-value=0.00037 Score=42.81 Aligned_cols=50 Identities=24% Similarity=0.432 Sum_probs=38.0
Q ss_pred ccCcEEEEEEecCCCCCCeeEEEeCCEEEeeCCeeEEEEccCCcCCCeEEEEEEEc
Q psy14542 25 VGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHVSA 80 (371)
Q Consensus 25 ~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~ 80 (371)
..++|.|.|.. ..+|.|++ |..+....+.+|-+.+...+-.|.|.|.+.+
T Consensus 5 ~~~~V~L~C~~-----~tsi~W~k-G~~~~~~~~~tlnLGs~~~DPRG~Y~C~~s~ 54 (69)
T cd07691 5 SEGKVFLKCNG-----ATNITWKK-GKEILEVSNTLLDLGSRINDPRGTYSCKESE 54 (69)
T ss_pred cCceEEEEecC-----CCcEEEec-CcccccccccEEeccCcccCCCcceEecCcc
Confidence 34679999943 25699999 4444433477899999999999999998865
No 353
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.64 E-value=0.00029 Score=47.95 Aligned_cols=63 Identities=16% Similarity=0.310 Sum_probs=37.7
Q ss_pred EEEeccCcEEEEEEecCC-CC-CCeeEEEeCCEEEee-C-------CeeEEEEc---cCCcC---CCeEEEEEEEcCCC
Q psy14542 21 VVVDVGHRIELHCRVSPK-RL-SSAKAWLKDGLVLRR-N-------SDEVLVLD---RVQRE---DAGMYQCHVSADDD 83 (371)
Q Consensus 21 ~~~~~G~~v~l~C~~~~~-~~-~~~~~W~~~~~~~~~-~-------~~~~l~i~---~~~~~---d~G~Y~C~~~~~~~ 83 (371)
..+..|+.++|.|.+... +| ...+.|+||+..... . .++++.+. .+..+ +.-.|.|.+.....
T Consensus 9 ~~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~H~~l 87 (96)
T cd07696 9 KQLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTSTLNVSTDDWISGDTFQCKVTHPDL 87 (96)
T ss_pred HHhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEECCCC
Confidence 446678999999977666 34 557999998743321 1 22223222 12222 23379999987654
No 354
>PHA02633 hypothetical protein; Provisional
Probab=97.64 E-value=0.00016 Score=43.14 Aligned_cols=38 Identities=16% Similarity=0.318 Sum_probs=33.4
Q ss_pred CeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEEEEEEe
Q psy14542 57 SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVILG 94 (371)
Q Consensus 57 ~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~ 94 (371)
....|+|-++..+|+|.|.|.+.+..-....++.|.|.
T Consensus 16 ~~~nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~ 53 (63)
T PHA02633 16 NCNNMLILNPTQSDSGIYMCITKNETYSDMMKFDLCIC 53 (63)
T ss_pred ccccEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEe
Confidence 55679999999999999999999887777888888887
No 355
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=97.61 E-value=0.00062 Score=45.12 Aligned_cols=69 Identities=22% Similarity=0.391 Sum_probs=45.3
Q ss_pred cCCcEEEEEEecCC-CCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccc
Q psy14542 110 VGHRIELHCRVSPK-RLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYR 188 (371)
Q Consensus 110 ~g~~v~l~C~~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g 188 (371)
.++.++|.|.+.++ |....+.|++++..+........... ..+| .|... +.|.+. ..+ ..
T Consensus 7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~----~~dg---------ty~~~--s~l~v~---~~~-~~ 67 (83)
T PF07654_consen 7 LGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPP----NSDG---------TYSVT--SSLTVT---WNS-GD 67 (83)
T ss_dssp STSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEE----ETTS---------EEEEE--EEEEEE---TTT-TG
T ss_pred CCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeeccccc----cccc---------ceeee--EEEEec---CCC-CC
Confidence 48899999999886 44578999999998765432211111 1333 33333 455555 555 77
Q ss_pred eeEEEeecc
Q psy14542 189 SYQCRGVNK 197 (371)
Q Consensus 189 ~y~C~~~~~ 197 (371)
.|+|.+.+.
T Consensus 68 ~ysC~V~H~ 76 (83)
T PF07654_consen 68 EYSCRVTHE 76 (83)
T ss_dssp GEEEEEEET
T ss_pred EEEEEEEEC
Confidence 999999876
No 356
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.61 E-value=0.0003 Score=47.82 Aligned_cols=66 Identities=15% Similarity=0.225 Sum_probs=40.6
Q ss_pred eecCCeEEEEEEeecC-CC--CceEEEeCCccccc-C--CceEEec------ceEEEeccCCCCCeEEEEEEEcCCCC
Q psy14542 234 VKKDESVILPCSAQGN-PL--PTIKWYKQDSPVEE-S--DRIQRIG------SSLSISHVEESDSGVWNCVANNSEGQ 299 (371)
Q Consensus 234 ~~~g~~~~l~C~~~~~-p~--~~v~W~~~~~~~~~-~--~~~~~~~------~~l~i~~~~~~d~G~Y~C~a~n~~g~ 299 (371)
+..|+.++|+|.+.|. .+ ..++|.++++.... . ......+ +.|.+..-...+.-.|+|.+.+....
T Consensus 11 l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~H~~l~ 88 (96)
T cd07696 11 LLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTSTLNVSTDDWISGDTFQCKVTHPDLP 88 (96)
T ss_pred hccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEECCCCC
Confidence 5668889999999988 33 35899998753211 1 0011122 23444444444456899999887644
No 357
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=97.59 E-value=0.00038 Score=48.37 Aligned_cols=81 Identities=15% Similarity=0.241 Sum_probs=46.6
Q ss_pred eecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCc-------CCCeeEEEEEeCCceeEeccceEEEEE
Q psy14542 108 VDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQR-------EDAGMYQCHIEDGKYHMLSSGELIIHQ 180 (371)
Q Consensus 108 ~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~-------~~~g~y~~~~~~~~~~~~~~~~l~i~~ 180 (371)
+.+|++++|.|.+..... ..+.|++....-.......+.+..... ...+.|..... .....|.|.+
T Consensus 3 v~~G~~vtL~C~~~~~~~-~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~------~~~~~L~I~~ 75 (104)
T cd05720 3 AELGQKVELKCEVLNSSP-TGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRS------SNSFVLTLKN 75 (104)
T ss_pred ccCCCeEEEEEEecCCCC-CcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEec------CCEEEEEECC
Confidence 368999999999865533 579999855320011112222221100 01222221110 1235799999
Q ss_pred eecCCccceeEEEeec
Q psy14542 181 VDESDRYRSYQCRGVN 196 (371)
Q Consensus 181 ~~~~d~~g~y~C~~~~ 196 (371)
++.+| +|.|.|.+..
T Consensus 76 ~~~sD-sgtY~Ca~~~ 90 (104)
T cd05720 76 FQKEN-EGYYFCSVAS 90 (104)
T ss_pred CCHHH-CEEEEEEEcc
Confidence 99999 9999998763
No 358
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=97.58 E-value=0.00079 Score=45.67 Aligned_cols=64 Identities=19% Similarity=0.346 Sum_probs=41.5
Q ss_pred CeEEEEEEee-cCCCCceEEEeCCcccccC------CceEEecceEEEeccCCCCCeEEEEEEEcCCCCce
Q psy14542 238 ESVILPCSAQ-GNPLPTIKWYKQDSPVEES------DRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDK 301 (371)
Q Consensus 238 ~~~~l~C~~~-~~p~~~v~W~~~~~~~~~~------~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~ 301 (371)
....+.|.+. |+|.+.|+|+++....... .......+.|.+.....+|+-.|+|++.|......
T Consensus 16 ~~~va~C~s~~gkP~a~ItW~~~~~~~~~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~~~ 86 (95)
T cd05719 16 PVTVATCVSANGKPPATISWETTLGGEAETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQEP 86 (95)
T ss_pred ccEEEEEECCCCcCCCEEEEEeCCCCcceeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCC
Confidence 4467899984 7999999999972211111 01111224577766667777799999999875543
No 359
>smart00406 IGv Immunoglobulin V-Type.
Probab=97.58 E-value=8.7e-05 Score=48.97 Aligned_cols=22 Identities=36% Similarity=0.708 Sum_probs=19.3
Q ss_pred CeeEEEEccCCcCCCeEEEEEE
Q psy14542 57 SDEVLVLDRVQREDAGMYQCHV 78 (371)
Q Consensus 57 ~~~~l~i~~~~~~d~G~Y~C~~ 78 (371)
...+|.|.+++.+|+|.|.|.+
T Consensus 60 ~~~~L~i~~~~~~D~G~Y~C~v 81 (81)
T smart00406 60 NDVSLTISNLRVEDTGTYYCAV 81 (81)
T ss_pred CEEEEEEcCCCHHHCEEEEEcC
Confidence 4478999999999999999964
No 360
>PHA03271 envelope glycoprotein C; Provisional
Probab=97.56 E-value=0.009 Score=50.57 Aligned_cols=115 Identities=13% Similarity=0.114 Sum_probs=66.6
Q ss_pred ceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecCCCC-
Q psy14542 174 GELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLP- 252 (371)
Q Consensus 174 ~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~- 252 (371)
-.+.|.++...+ +|.|+....+......... .+.+.+.. .+|.+...+.. +..|+...-+|.+..+-++
T Consensus 207 m~v~I~svD~~t-~Gy~~v~~~d~~N~~i~e~--~~~~~v~~----RPPsVsV~a~P---VL~Ge~YkAtC~vAnYYPP~ 276 (490)
T PHA03271 207 MGVEIRNVDYAD-NGYIQVIMRDPFNRPLLDK--HIYIRVCQ----RPASVDVLAPP---VLSGENYKASCIVRHFYPPG 276 (490)
T ss_pred eeEEEEEeeccc-ceEEEEEecCCCCCccccc--eEEEEEEe----cCCCccccCCc---cccCCCceEEEEeeeecCCC
Confidence 368899999999 9977555444311111111 11333331 45656665554 8899999999999875443
Q ss_pred --ceEEEeCCcccccCCceE------------EecceEEEeccCCCCCeEEEEEEEcCCC
Q psy14542 253 --TIKWYKQDSPVEESDRIQ------------RIGSSLSISHVEESDSGVWNCVANNSEG 298 (371)
Q Consensus 253 --~v~W~~~~~~~~~~~~~~------------~~~~~l~i~~~~~~d~G~Y~C~a~n~~g 298 (371)
.+.|++||..+....... ..-++|.+.+...+.--+.+|.+.-..+
T Consensus 277 SvrlrWf~nG~~V~~~~~rdt~~~w~d~~~g~S~VSTltl~a~~~~~PPsLRCeV~W~rd 336 (490)
T PHA03271 277 SVYVSWRQNGNIATPRKDRDGSFWWFESGRGATLVSTITLGNSGIDPPPKISCLVAWKQG 336 (490)
T ss_pred ceEEEEEeCCccccCccccceeEEEecCCCceeEEEEEEcccccCCCCCCceEEEEEccC
Confidence 499999998764432111 0112333333322333488898865444
No 361
>smart00406 IGv Immunoglobulin V-Type.
Probab=97.52 E-value=0.00057 Score=44.99 Aligned_cols=75 Identities=16% Similarity=0.276 Sum_probs=40.3
Q ss_pred cEEEEEEecCCCCC-ceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEe-----ccceEEEEEeecCCc
Q psy14542 113 RIELHCRVSPKRLS-SAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHML-----SSGELIIHQVDESDR 186 (371)
Q Consensus 113 ~v~l~C~~~~~~~~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~-----~~~~l~i~~~~~~d~ 186 (371)
+++|.|.+...... ..+.|++.... .......... .....+.-....+++... ....|.|.+++.+|
T Consensus 1 ~v~l~C~~~~~~~~~~~v~W~~~~~~--~~~~~l~~~~----~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D- 73 (81)
T smart00406 1 SVTLSCKASGFTFSSYYVSWVRQPPG--KGLEWLGYIG----SSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVED- 73 (81)
T ss_pred CEEEEEEEeccccceeEEEEEEeCCC--CCeEEEEEEc----CCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHH-
Confidence 47899998765431 37999986531 1111111111 001111100112233222 22579999999999
Q ss_pred cceeEEEe
Q psy14542 187 YRSYQCRG 194 (371)
Q Consensus 187 ~g~y~C~~ 194 (371)
+|.|.|.+
T Consensus 74 ~G~Y~C~v 81 (81)
T smart00406 74 TGTYYCAV 81 (81)
T ss_pred CEEEEEcC
Confidence 99999964
No 362
>PHA02982 hypothetical protein; Provisional
Probab=97.51 E-value=0.0019 Score=48.99 Aligned_cols=111 Identities=15% Similarity=0.339 Sum_probs=73.2
Q ss_pred EEEeccCcEEEEEEecCCCCCCeeEEEeC-CEEEeeC---------------------------CeeEEEEccCCcCCCe
Q psy14542 21 VVVDVGHRIELHCRVSPKRLSSAKAWLKD-GLVLRRN---------------------------SDEVLVLDRVQREDAG 72 (371)
Q Consensus 21 ~~~~~G~~v~l~C~~~~~~~~~~~~W~~~-~~~~~~~---------------------------~~~~l~i~~~~~~d~G 72 (371)
+....|++|.|.|....+....+..|+++ +..+... ..++|+|.++..+..|
T Consensus 34 v~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N~G 113 (251)
T PHA02982 34 VNATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQNLG 113 (251)
T ss_pred hhccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCcccCC
Confidence 45678999999997555555567899984 3344421 6789999999999999
Q ss_pred EEEEEEEcCCCCe-EEEEEEEEecceeeEecCCceeeecCCcEEEEEEecCCCCCceEEEeeCCEE
Q psy14542 73 MYQCHVSADDDSA-QMSAQVILGGELVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLV 137 (371)
Q Consensus 73 ~Y~C~~~~~~~~~-~~~~~l~v~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~ 137 (371)
-|+|++....+.. ...-.|.|......+... .-...-.+.|-+..... .-..|.-+|..
T Consensus 114 CYtc~~ks~~~k~E~c~kCl~V~~~~V~~~W~-----e~nNeT~V~CyVgS~~~-dvp~W~V~GVv 173 (251)
T PHA02982 114 CFTCEAKDAEGKEETCEKCLEIQKEDILYVVE-----EHNNETIITCFVGSKHG-DVPRFIVAGIV 173 (251)
T ss_pred ceEEEEecCCCchheeheeeeEecceEEEEEE-----ecCCeEEEEEEEEeccC-CCccEEEeeEE
Confidence 9999999866554 336667763122222111 12223466898866544 22388877764
No 363
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=97.47 E-value=0.0012 Score=44.66 Aligned_cols=69 Identities=16% Similarity=0.257 Sum_probs=44.0
Q ss_pred CeEEEEEEee-cCCCCceEEEeCCcccccCCc------eEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEE
Q psy14542 238 ESVILPCSAQ-GNPLPTIKWYKQDSPVEESDR------IQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFI 306 (371)
Q Consensus 238 ~~~~l~C~~~-~~p~~~v~W~~~~~~~~~~~~------~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 306 (371)
....+.|.+. |.|.+.|+|+++......... .....+.|.+.....+|+..|+|++.|........+.+
T Consensus 16 ~~~va~C~s~~gkPaa~IsW~~~~~g~~~~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~~~~~~~~ 91 (95)
T cd07703 16 PVPVAKCVSANGRPPARISWSSTLGGNANTTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQEPQLLPV 91 (95)
T ss_pred ccEEEEEEcCCCCCCcEEEEEcCCCCCeeEEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEEEE
Confidence 3478999876 689999999987322111110 01122457776666777789999999987654444433
No 364
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=97.45 E-value=0.00054 Score=46.44 Aligned_cols=60 Identities=12% Similarity=0.160 Sum_probs=37.6
Q ss_pred EEeccCcEEEEEEecCCCC-CCeeEEEeCCEEEeeC---------CeeEEEEc---cCCcCCCe-EEEEEEEcCC
Q psy14542 22 VVDVGHRIELHCRVSPKRL-SSAKAWLKDGLVLRRN---------SDEVLVLD---RVQREDAG-MYQCHVSADD 82 (371)
Q Consensus 22 ~~~~G~~v~l~C~~~~~~~-~~~~~W~~~~~~~~~~---------~~~~l~i~---~~~~~d~G-~Y~C~~~~~~ 82 (371)
.+..++.++|.|.+...+| ...+.|++||..+..+ .+ ++.+. .+..++.| .|+|.+....
T Consensus 12 e~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~~~~~~~~~~~d-ty~~~S~L~vt~~~~~~~ysC~V~H~g 85 (96)
T cd07697 12 EIEKQGQGIYLCLLENFFPDVIQVHWREGNSPSILGSQKSEKDKDND-VYSTTSWLTVTKDSLGKKFRCIYKHEG 85 (96)
T ss_pred HHccCCCEEEEEEEEEEeCCCeEEEEEECCEECcCCeEeccEecCCC-EEEEEEEEEECchhCCCeEEEEEEECC
Confidence 4555678999997766566 4569999999876433 11 22221 22333234 5999998744
No 365
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=97.45 E-value=0.0013 Score=44.69 Aligned_cols=59 Identities=12% Similarity=0.130 Sum_probs=39.3
Q ss_pred CcEEEEEEecCCCCCCeeEEEeC--CEEEeeC---------CeeEEEEccCCcCCCeEEEEEEEcCCCCe
Q psy14542 27 HRIELHCRVSPKRLSSAKAWLKD--GLVLRRN---------SDEVLVLDRVQREDAGMYQCHVSADDDSA 85 (371)
Q Consensus 27 ~~v~l~C~~~~~~~~~~~~W~~~--~~~~~~~---------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~ 85 (371)
....+.|....++|.+.|.|+++ +...... ..+.|.+.....+|.-.|+|++.+.....
T Consensus 16 ~~~va~C~s~~gkP~a~ItW~~~~~~~~~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~~ 85 (95)
T cd05719 16 PVTVATCVSANGKPPATISWETTLGGEAETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQE 85 (95)
T ss_pred ccEEEEEECCCCcCCCEEEEEeCCCCcceeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCC
Confidence 45788998778999999999996 2211111 23456665444444459999999876444
No 366
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=97.45 E-value=0.0012 Score=47.01 Aligned_cols=87 Identities=16% Similarity=0.297 Sum_probs=47.2
Q ss_pred CceeeecCCcEEEEEEecCCC-CCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEec-----cceEE
Q psy14542 104 NQVVVDVGHRIELHCRVSPKR-LSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLS-----SGELI 177 (371)
Q Consensus 104 ~~~~~~~g~~v~l~C~~~~~~-~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~-----~~~l~ 177 (371)
....+.+|++++|.|...... ....+.|++-.. .......+.+....... .+ .....+++.... ...|.
T Consensus 5 ~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~--g~~p~~l~~~~~~~~~~--~~-~~~~~~rf~~~~~~~~~~~~L~ 79 (117)
T cd04981 5 GPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAP--GKGLEWIGFINPGGGET--YY-ADSVKGRFTITRDTSKSTVYLQ 79 (117)
T ss_pred CCeEEcCCCCEEEEEEEeCCCcccceEEEEEECC--CCCcEEEEEEecCCCce--Ee-CcccCCcEEEEEEccCCEEEEE
Confidence 344558999999999876432 125799998432 11111112221110000 00 000012333221 13699
Q ss_pred EEEeecCCccceeEEEeec
Q psy14542 178 IHQVDESDRYRSYQCRGVN 196 (371)
Q Consensus 178 i~~~~~~d~~g~y~C~~~~ 196 (371)
|.++..+| +|.|.|.+..
T Consensus 80 I~~~~~~D-sa~YyCa~~~ 97 (117)
T cd04981 80 LNSLTPED-TAVYYCARGL 97 (117)
T ss_pred ECCCCHHH-CEEEEEEEEc
Confidence 99999999 9999998764
No 367
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=97.44 E-value=0.0015 Score=45.34 Aligned_cols=62 Identities=15% Similarity=0.247 Sum_probs=43.1
Q ss_pred eCCCcEEEeccCcEEEEEEecCCC-CC-CeeEEEeC--CE-EEee-----------C------------CeeEEEEccCC
Q psy14542 16 SPSGQVVVDVGHRIELHCRVSPKR-LS-SAKAWLKD--GL-VLRR-----------N------------SDEVLVLDRVQ 67 (371)
Q Consensus 16 ~p~~~~~~~~G~~v~l~C~~~~~~-~~-~~~~W~~~--~~-~~~~-----------~------------~~~~l~i~~~~ 67 (371)
++.. ..+..|+.++|.|+.+... .. ..+.|+|. +. +... . ...+|.|.+++
T Consensus 4 ~~~~-~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~ 82 (115)
T cd05721 4 QQSP-VLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLR 82 (115)
T ss_pred ecCC-eEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCC
Confidence 3444 7889999999999764322 22 45888872 21 1000 0 56789999999
Q ss_pred cCCCeEEEEEE
Q psy14542 68 REDAGMYQCHV 78 (371)
Q Consensus 68 ~~d~G~Y~C~~ 78 (371)
.+|++.|.|..
T Consensus 83 a~DTa~Y~Ca~ 93 (115)
T cd05721 83 ANQTDIYFCKI 93 (115)
T ss_pred HHHCeEEEEEe
Confidence 99999999976
No 368
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.44 E-value=0.00052 Score=46.59 Aligned_cols=64 Identities=19% Similarity=0.279 Sum_probs=39.8
Q ss_pred eecCCeEEEEEEeecCC--C-CceEEEeCCcccccC--Cce------EEecceEEEeccCCCCCeEEEEEEEcCCC
Q psy14542 234 VKKDESVILPCSAQGNP--L-PTIKWYKQDSPVEES--DRI------QRIGSSLSISHVEESDSGVWNCVANNSEG 298 (371)
Q Consensus 234 ~~~g~~~~l~C~~~~~p--~-~~v~W~~~~~~~~~~--~~~------~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g 298 (371)
...++.++|+|.+.++. . ..|.|.++|+. ... ... ....+.|.+..-.......|+|.+.+...
T Consensus 16 l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~-~~~~t~~~~~~dgTys~~S~L~v~~~~W~~g~~ytC~V~H~~l 90 (99)
T cd04986 16 LLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK-EAVQTSAESDQCGCYSVSSVLPGCAEEWNKGEPFACTVTHPEG 90 (99)
T ss_pred hCcCCccEEEEEEeccCCCCCeEEEEEECCcc-CcEEcCcccCCCCCEEEEEEEEeCHHHhcCCCeEEEEEECCCc
Confidence 44678899999999844 2 46999999874 110 000 11123455544344445679999987654
No 369
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.43 E-value=0.0011 Score=45.09 Aligned_cols=61 Identities=20% Similarity=0.341 Sum_probs=38.5
Q ss_pred cCCeEEEEEEeecCCC--CceEEEeCCcccccCC----ceEEecc------eEEEeccCCCCCeEEEEEEEcCC
Q psy14542 236 KDESVILPCSAQGNPL--PTIKWYKQDSPVEESD----RIQRIGS------SLSISHVEESDSGVWNCVANNSE 297 (371)
Q Consensus 236 ~g~~~~l~C~~~~~p~--~~v~W~~~~~~~~~~~----~~~~~~~------~l~i~~~~~~d~G~Y~C~a~n~~ 297 (371)
.++.++|.|.+.|+.+ ..++|.+||.. ..+. .....++ .|.+..........|+|++.+..
T Consensus 15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~ 87 (95)
T cd04985 15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHPS 87 (95)
T ss_pred CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCC
Confidence 4567899999998544 46899999986 3221 1111122 35554443334668999998865
No 370
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=97.42 E-value=0.06 Score=45.55 Aligned_cols=171 Identities=15% Similarity=0.196 Sum_probs=88.1
Q ss_pred ecCCcEEEEEEecC--CCCCceEEEeeCCEEeeeCCee-----EEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEe
Q psy14542 109 DVGHRIELHCRVSP--KRLSSAKAWLKDGLVLRRNSDE-----VLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQV 181 (371)
Q Consensus 109 ~~g~~v~l~C~~~~--~~~~~~v~W~~~~~~~~~~~~~-----~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~ 181 (371)
..|..+.|.|.+.- ........|+-.+-++..--.. ...... .++. .|...+......-...++|+|.++
T Consensus 277 ~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~--~~~~-~~~i~~~~~~s~dlk~STLTIkka 353 (500)
T PHA02914 277 EVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDF--AEDD-DFMISAHANYSDDLKNSTLTIKKA 353 (500)
T ss_pred ccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeeccc--ccCC-ceEEEEecccccchhhceEEeeeE
Confidence 56899999998853 2222678898766544321100 111111 1111 122211111222234579999999
Q ss_pred ecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeec-CCeEEEEEEeecC--CCCceEEEe
Q psy14542 182 DESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKK-DESVILPCSAQGN--PLPTIKWYK 258 (371)
Q Consensus 182 ~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~-g~~~~l~C~~~~~--p~~~v~W~~ 258 (371)
..+. .|-|.|++... .-...... -+.|.. ...+. +-.. .......|-+... .++++.|.-
T Consensus 354 ~I~N-~GCY~~~a~~g-~~~~ec~~---Cl~V~d-----~V~f~-------W~~e~~n~T~V~Cyv~sy~~kp~si~wkv 416 (500)
T PHA02914 354 HINN-AGCYEAQAFMG-KFKEECRH---CFKVAD-----HVFFK-------WNTEGDNETKVACYAAQYDMQPFSILWKS 416 (500)
T ss_pred EEEc-CCceEEEEecC-cchhhhhh---heEecc-----EEEEE-------EEeccCceEEEEEEEEecccCCceeEEEE
Confidence 9999 99999999855 22222222 343431 11111 1222 2334578987543 446799998
Q ss_pred CCcccccCC-----ceE---E---ecceEEEeccCCCC-CeEEEEEEEcCCCC
Q psy14542 259 QDSPVEESD-----RIQ---R---IGSSLSISHVEESD-SGVWNCVANNSEGQ 299 (371)
Q Consensus 259 ~~~~~~~~~-----~~~---~---~~~~l~i~~~~~~d-~G~Y~C~a~n~~g~ 299 (371)
+|....... ... . ..+.|.|.+-...| --.-.|+.....|-
T Consensus 417 nGV~~~G~~~~~l~~~~~~~~~Gc~~seI~I~~s~d~dtV~k~~Cr~~tg~~Y 469 (500)
T PHA02914 417 NGVSFGGEIADALDEHEGAICDGCEASEIIIMDKRDKDTVKKLSCINITGQGY 469 (500)
T ss_pred ccEEecCeecCcccccccccccccceEEEEEecccCccccccceEEEecCCCc
Confidence 775332111 000 0 11356676666566 45677887665554
No 371
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=97.42 E-value=0.0013 Score=43.58 Aligned_cols=63 Identities=24% Similarity=0.383 Sum_probs=42.6
Q ss_pred eecCCeEEEEEEeecC-CCC-ceEEEeCCcccccCCceE----Eec------ceEEEeccCCCCCeEEEEEEEcCCCC
Q psy14542 234 VKKDESVILPCSAQGN-PLP-TIKWYKQDSPVEESDRIQ----RIG------SSLSISHVEESDSGVWNCVANNSEGQ 299 (371)
Q Consensus 234 ~~~g~~~~l~C~~~~~-p~~-~v~W~~~~~~~~~~~~~~----~~~------~~l~i~~~~~~d~G~Y~C~a~n~~g~ 299 (371)
...++.++|.|.+.++ |.. .|.|+++|..+....... ..+ +.|.+. ..+...|+|++.+....
T Consensus 5 ~~~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~l~ 79 (83)
T PF07654_consen 5 EELGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHESLP 79 (83)
T ss_dssp HHSTSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETTSS
T ss_pred ccCCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECCCC
Confidence 3458889999999984 443 699999998765442211 122 235554 56677999999887654
No 372
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=97.39 E-value=0.0008 Score=45.53 Aligned_cols=64 Identities=11% Similarity=0.045 Sum_probs=41.7
Q ss_pred cEEEEEEecCCCCCCeeEEEeCCEEE--eeC---------CeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEEEE
Q psy14542 28 RIELHCRVSPKRLSSAKAWLKDGLVL--RRN---------SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQV 91 (371)
Q Consensus 28 ~v~l~C~~~~~~~~~~~~W~~~~~~~--~~~---------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l 91 (371)
-+.+.|....+.|.+.|.|+++.... ... ..+.|.+.....+|...|+|++.+........+.+
T Consensus 17 ~~va~C~s~~gkPaa~IsW~~~~~g~~~~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~~~~~~~~ 91 (95)
T cd07703 17 VPVAKCVSANGRPPARISWSSTLGGNANTTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQEPQLLPV 91 (95)
T ss_pred cEEEEEEcCCCCCCcEEEEEcCCCCCeeEEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEEEE
Confidence 57899988889999999999972111 110 13356665444445559999999876554444433
No 373
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=97.33 E-value=0.0016 Score=44.22 Aligned_cols=33 Identities=6% Similarity=-0.086 Sum_probs=25.9
Q ss_pred ecCCcEEEEEEecCC-CCCceEEEeeCCEEeeeC
Q psy14542 109 DVGHRIELHCRVSPK-RLSSAKAWLKDGLVLRRN 141 (371)
Q Consensus 109 ~~g~~v~l~C~~~~~-~~~~~v~W~~~~~~~~~~ 141 (371)
..+..++|.|.+.++ |....++|.++|..+..+
T Consensus 14 ~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~~ 47 (96)
T cd07697 14 EKQGQGIYLCLLENFFPDVIQVHWREGNSPSILG 47 (96)
T ss_pred ccCCCEEEEEEEEEEeCCCeEEEEEECCEECcCC
Confidence 345678999999986 555889999999976543
No 374
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=97.33 E-value=0.0021 Score=43.40 Aligned_cols=66 Identities=18% Similarity=0.325 Sum_probs=44.3
Q ss_pred eecCCeEEE-EEEee-cCCCCceEEEeCCcccccCCc------eEEecceEEEeccCCCCCeEEEEEEEcCCCC
Q psy14542 234 VKKDESVIL-PCSAQ-GNPLPTIKWYKQDSPVEESDR------IQRIGSSLSISHVEESDSGVWNCVANNSEGQ 299 (371)
Q Consensus 234 ~~~g~~~~l-~C~~~-~~p~~~v~W~~~~~~~~~~~~------~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~ 299 (371)
+..|..+.+ .|.+. |.|.+.|+|+.+......... ...-.+.|.+...+.+|.-.++|++.+..-.
T Consensus 13 ~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~~~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~al~ 86 (97)
T cd07704 13 IDGGNGTTLAACCAAEGRPAADVTWETNVYGTSESHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPALQ 86 (97)
T ss_pred eecCcceeEEEEEccCCccCCEeEEeCCCCCccceeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCcccC
Confidence 677888888 89864 689999999987433221110 1112235666666677888999999987543
No 375
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=97.32 E-value=0.00057 Score=48.48 Aligned_cols=72 Identities=13% Similarity=0.189 Sum_probs=44.6
Q ss_pred EEeccCcEEEEEEecC----CCCCCeeEEEeCCEEEeeC----------------------CeeEEEEccCCcCCCeEEE
Q psy14542 22 VVDVGHRIELHCRVSP----KRLSSAKAWLKDGLVLRRN----------------------SDEVLVLDRVQREDAGMYQ 75 (371)
Q Consensus 22 ~~~~G~~v~l~C~~~~----~~~~~~~~W~~~~~~~~~~----------------------~~~~l~i~~~~~~d~G~Y~ 75 (371)
...-++.|.|+|.+.. ..+...+.|..+|..+-.- ++.+|.+...+.- .|.|+
T Consensus 23 ~t~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYT 101 (130)
T PF08204_consen 23 YTVCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYT 101 (130)
T ss_dssp E-TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEE
T ss_pred EEecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceE
Confidence 3445789999996543 1223459999988876433 2344777764444 89999
Q ss_pred EEEEcCCCCeEEEEEEEEe
Q psy14542 76 CHVSADDDSAQMSAQVILG 94 (371)
Q Consensus 76 C~~~~~~~~~~~~~~l~v~ 94 (371)
|.+.....+.+..+.|...
T Consensus 102 CeVt~~~~ege~~i~Lk~~ 120 (130)
T PF08204_consen 102 CEVTELSREGETTIELKYR 120 (130)
T ss_dssp EEEEETTEEEEEEEEEEE-
T ss_pred EEEEecCCCceEEEEEEEE
Confidence 9999877777777777664
No 376
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.30 E-value=0.002 Score=43.76 Aligned_cols=41 Identities=7% Similarity=0.009 Sum_probs=28.2
Q ss_pred ceEEEeCCCcEEEeccCcEEEEEEecCCCC-CCeeEEEeCCEE
Q psy14542 11 LSIEMSPSGQVVVDVGHRIELHCRVSPKRL-SSAKAWLKDGLV 52 (371)
Q Consensus 11 ~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~-~~~~~W~~~~~~ 52 (371)
|+|...++. ..-..++.++|.|.+...+| ...+.|++||..
T Consensus 2 P~v~~l~~~-~~~~~~~~~~L~C~a~gFyP~~i~vtW~k~g~~ 43 (95)
T cd04985 2 PTVFPLVPC-CSSSSSDSVTLGCLATGFLPEPVTFTWNSGSNS 43 (95)
T ss_pred CeEEEeCCC-ccccCCCcEEEEEEEeeEECCCcEEEEeECCEE
Confidence 455555554 22335678999997766565 456999999996
No 377
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=97.25 E-value=0.00098 Score=45.28 Aligned_cols=43 Identities=19% Similarity=0.271 Sum_probs=31.1
Q ss_pred cceEEEeCCCcEEEeccCcEEEEEEecCCC-C-CCeeEEEeCCEE
Q psy14542 10 SLSIEMSPSGQVVVDVGHRIELHCRVSPKR-L-SSAKAWLKDGLV 52 (371)
Q Consensus 10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~-~-~~~~~W~~~~~~ 52 (371)
+|++.+.|+.......++.++|.|.+...+ | ...+.|.++|..
T Consensus 3 ~PsV~l~pPs~e~l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~ 47 (99)
T cd04986 3 KPSLSLQRPALEDLLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK 47 (99)
T ss_pred CCEEEEECcChHHhCcCCccEEEEEEeccCCCCCeEEEEEECCcc
Confidence 466777765534455788999999776655 4 457999998764
No 378
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=97.19 E-value=0.0021 Score=43.15 Aligned_cols=65 Identities=14% Similarity=0.231 Sum_probs=42.8
Q ss_pred eecCCeEEEEEEeec-CCC--CceEEEeCCcccccCCceE--------EecceEEEeccCCCCCeEEEEEEEcCCC
Q psy14542 234 VKKDESVILPCSAQG-NPL--PTIKWYKQDSPVEESDRIQ--------RIGSSLSISHVEESDSGVWNCVANNSEG 298 (371)
Q Consensus 234 ~~~g~~~~l~C~~~~-~p~--~~v~W~~~~~~~~~~~~~~--------~~~~~l~i~~~~~~d~G~Y~C~a~n~~g 298 (371)
+..|..+++.|.+.+ +|. ..+.|++....+....... .....+.+.....+|.-+|+|+|....+
T Consensus 12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtftptreD~g~~fsC~A~L~l~ 87 (99)
T cd07689 12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFTPTIEDIGKVLVCRAKLHID 87 (99)
T ss_pred ccCCceEEEEEEecCcccCCceEEEEecCcceecccccccccccCCCCCcceeEEEecchhhCCcEEEEEEEEeec
Confidence 678999999999975 555 5699998665544332111 1224566666555455599999975544
No 379
>PHA02633 hypothetical protein; Provisional
Probab=97.15 E-value=0.0016 Score=39.01 Aligned_cols=41 Identities=22% Similarity=0.321 Sum_probs=35.1
Q ss_pred cceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEecCcc
Q psy14542 273 GSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKY 313 (371)
Q Consensus 273 ~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~ 313 (371)
+..|-|-++..+|+|.|.|...|..-....++.|.|.....
T Consensus 17 ~~nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~~~~ 57 (63)
T PHA02633 17 CNNMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICLRIE 57 (63)
T ss_pred cccEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEeeccc
Confidence 45688899999999999999999888888888888876554
No 380
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=97.10 E-value=0.0044 Score=43.03 Aligned_cols=82 Identities=13% Similarity=0.177 Sum_probs=48.3
Q ss_pred ceeeecCCcEEEEEEecCCCCC--ceEEEeeCCEEeeeCCeeEEEEc---ccCcCCCeeEEEEEeCCceeEeccceEEEE
Q psy14542 105 QVVVDVGHRIELHCRVSPKRLS--SAKAWLKDGLVLRRNSDEVLVLD---RVQREDAGMYQCHIEDGKYHMLSSGELIIH 179 (371)
Q Consensus 105 ~~~~~~g~~v~l~C~~~~~~~~--~~v~W~~~~~~~~~~~~~~~~~~---~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~ 179 (371)
...+..|..++|.|.+.+.... ..+.|.|..... -.....+. +......+.++|..+.... ...|.+.
T Consensus 7 ~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~---lE~c~~~~~~g~~~~~~~~r~tcs~~~s~n----tv~L~l~ 79 (115)
T cd05721 7 PVLASSNGAASLVCEYTYNGFSKEFRASLLKGADSA---VEVCAVTGNMSNQLQTSLDGFNCDGTLGNE----QVNFTLQ 79 (115)
T ss_pred CeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCC---cEEEEEEeCCCccccccCCCeEEeEeCCCC----EEEEEEc
Confidence 4445788899999999775432 478998832211 01111111 1111223444444433322 2579999
Q ss_pred EeecCCccceeEEEe
Q psy14542 180 QVDESDRYRSYQCRG 194 (371)
Q Consensus 180 ~~~~~d~~g~y~C~~ 194 (371)
+++.+| .+.|.|..
T Consensus 80 ~L~a~D-Ta~Y~Ca~ 93 (115)
T cd05721 80 NLRANQ-TDIYFCKI 93 (115)
T ss_pred CCCHHH-CeEEEEEe
Confidence 999999 99999964
No 381
>KOG1480|consensus
Probab=97.10 E-value=0.00053 Score=62.23 Aligned_cols=76 Identities=24% Similarity=0.504 Sum_probs=57.2
Q ss_pred eecCCeEEEEEEe-ecCCCCceEEEeCCcccccCCceE-EecceEEEeccCCCCCeEEEEEEEcCCCCc---eeEEEEEE
Q psy14542 234 VKKDESVILPCSA-QGNPLPTIKWYKQDSPVEESDRIQ-RIGSSLSISHVEESDSGVWNCVANNSEGQD---KMQLFIQY 308 (371)
Q Consensus 234 ~~~g~~~~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~---~~~~~l~v 308 (371)
|..+....+.|.. .+.|...+.|++++..+.+...+. .....+++..++..|.|+|+|+|.|-.+.. ...+.+.|
T Consensus 141 V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~pd~n~~~~~d~~li~~~arlsd~~nytc~a~ni~~~r~~~~~~v~vyv 220 (909)
T KOG1480|consen 141 VQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDPDANVIRASDHNLIISQARLSDSGNYTCEATNIVAKRKSDPATVQVYV 220 (909)
T ss_pred ecccccccccccCcccchhhhhhccccCCCCCccccchhhhcCCccccchhhhhcccceeeeehhhccccccceEEEEEE
Confidence 7778888888885 577888899999998877643333 334568999999999999999999987753 34444444
Q ss_pred e
Q psy14542 309 A 309 (371)
Q Consensus 309 ~ 309 (371)
.
T Consensus 221 ~ 221 (909)
T KOG1480|consen 221 N 221 (909)
T ss_pred c
Confidence 4
No 382
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=97.05 E-value=0.0043 Score=41.69 Aligned_cols=58 Identities=17% Similarity=0.281 Sum_probs=42.2
Q ss_pred EeccCcEEEEEEecCCCCC--CeeEEEeCCEEEeeC-------------CeeEEEEccCCcCCCe-EEEEEEEcC
Q psy14542 23 VDVGHRIELHCRVSPKRLS--SAKAWLKDGLVLRRN-------------SDEVLVLDRVQREDAG-MYQCHVSAD 81 (371)
Q Consensus 23 ~~~G~~v~l~C~~~~~~~~--~~~~W~~~~~~~~~~-------------~~~~l~i~~~~~~d~G-~Y~C~~~~~ 81 (371)
+.+|..+++.|.+....|. ..+.|+++...+... ....+.+.. +.+|.| .|.|.|...
T Consensus 12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtftp-treD~g~~fsC~A~L~ 85 (99)
T cd07689 12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFTP-TIEDIGKVLVCRAKLH 85 (99)
T ss_pred ccCCceEEEEEEecCcccCCceEEEEecCcceecccccccccccCCCCCcceeEEEec-chhhCCcEEEEEEEEe
Confidence 5899999999988877776 679999977654432 223455554 477877 999999643
No 383
>KOG1480|consensus
Probab=96.95 E-value=0.00043 Score=62.83 Aligned_cols=162 Identities=21% Similarity=0.347 Sum_probs=93.0
Q ss_pred cceEEEeCCCcEEEeccCcEEEEEEecCCC---CCCeeEEEeCCEEEeeC----------CeeEEEEccCCcCCCe---E
Q psy14542 10 SLSIEMSPSGQVVVDVGHRIELHCRVSPKR---LSSAKAWLKDGLVLRRN----------SDEVLVLDRVQREDAG---M 73 (371)
Q Consensus 10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~---~~~~~~W~~~~~~~~~~----------~~~~l~i~~~~~~d~G---~ 73 (371)
-+.+...|.+ .++..|.++.|.|...... ....-.|..+.+..... ......|..-..++.| .
T Consensus 24 l~~~~~~p~~-~yii~~~p~~l~c~a~~a~~i~~kc~~~wv~~~~~~~~~~~d~tsg~~~~~~si~Isr~~v~~~~~~~d 102 (909)
T KOG1480|consen 24 LPHFTTEPKS-AYIIKNKPLRLQCKANPATQIRFKCNSEWVHQSRHEKLEGTDETSGLGVREVSIDISRQQVETSGGPED 102 (909)
T ss_pred cceeeecCCc-cceecCCCccceecCCcccccccccChhhhcCccceeeeccCcccceeEEeeeeeeehhhhhcccCccc
Confidence 4678888988 8999999999999543221 12234566544332221 2223444444444433 4
Q ss_pred EEEE--EEcCCCCeE-EEEEEEEecceeeEecCCc-eeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEc
Q psy14542 74 YQCH--VSADDDSAQ-MSAQVILGGELVEIASSNQ-VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLD 149 (371)
Q Consensus 74 Y~C~--~~~~~~~~~-~~~~l~v~~~~~~~~~~~~-~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~ 149 (371)
|.|+ +....|... ....+.+......+...+. ..+..+..+.+.|......+...+.|++++..+....
T Consensus 103 ~~cQc~a~~~~g~~~s~~a~vr~ay~rk~f~~~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~pd~------- 175 (909)
T KOG1480|consen 103 YWCQCVAWSDDGTVKSRKATVRIAYLRKHFEQSPVGQEVQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDPDA------- 175 (909)
T ss_pred eeeeeeeecCCCcchhhhHHHHHHHHHHhhccChhhheecccccccccccCcccchhhhhhccccCCCCCccc-------
Confidence 6555 444444211 1111111112222333333 2346788889999986544338899999987665522
Q ss_pred ccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeecc
Q psy14542 150 RVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNK 197 (371)
Q Consensus 150 ~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~ 197 (371)
.........+++..++..| .|.|+|++.|.
T Consensus 176 -----------------n~~~~~d~~li~~~arlsd-~~nytc~a~ni 205 (909)
T KOG1480|consen 176 -----------------NVIRASDHNLIISQARLSD-SGNYTCEATNI 205 (909)
T ss_pred -----------------cchhhhcCCccccchhhhh-cccceeeeehh
Confidence 1112223568888888888 89999988887
No 384
>KOG0613|consensus
Probab=96.87 E-value=0.0029 Score=61.23 Aligned_cols=116 Identities=12% Similarity=0.125 Sum_probs=77.1
Q ss_pred eecCCeEEEEEEeecCCCCc-eEEEeCCcccccCCce------EEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEE
Q psy14542 234 VKKDESVILPCSAQGNPLPT-IKWYKQDSPVEESDRI------QRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFI 306 (371)
Q Consensus 234 ~~~g~~~~l~C~~~~~p~~~-v~W~~~~~~~~~~~~~------~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 306 (371)
+..+..+.+.|...+.+.+. +.|++++.....+... ......+.|..+...+.+.|.|.|.|..|........
T Consensus 346 a~d~~~v~m~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ts~~~~~~~~~~~e~~~~~~~a~n~~g~~~~~~~~ 425 (1205)
T KOG0613|consen 346 ARDNTLVEMPTALSGTQKPDEAQGYHGEEVSSESLGALPCPVGTVTSHTYTIKDAGPGEGYFTRVPAVNKGGTEQTIAES 425 (1205)
T ss_pred cccCcceeecccccCCcCCchheeecccccccccccccccccccccCcchhhhhcCcccccccccceeccCCcccccchh
Confidence 66677899999999888877 9999877654443211 1233468888999999999999999999986555444
Q ss_pred EEecCcccccccceEEEEeeeeccccccccccccccceeeeeecC--CeEEEeeeeecCCCCcccc
Q psy14542 307 QYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKD--ESVILPCSAQGNPLPTIKY 370 (371)
Q Consensus 307 ~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~~~l~C~~~g~p~p~i~W 370 (371)
.|.+.+. - ..|.++-.+.+....++ +.+.+.|.+.+++.| +.|
T Consensus 426 ~vs~~~~---------g-----------t~~~~~kk~~~~t~~L~~~~~i~~~~~~~s~~~~-~~~ 470 (1205)
T KOG0613|consen 426 TVSEEMP---------G-----------TQPPKFKKDVSTTDLLTVKDEITVRTPDSSTSMP-MTT 470 (1205)
T ss_pred hcccccC---------C-----------CCCccccccccccccccCCcccccccCCCCcccc-cee
Confidence 4443333 0 01122223333345555 788888988888766 444
No 385
>KOG0613|consensus
Probab=96.68 E-value=0.015 Score=56.51 Aligned_cols=245 Identities=11% Similarity=0.082 Sum_probs=136.8
Q ss_pred EEEEEEecCCCCCCeeEEEeCCEEEeeC------------------------------------------CeeEEEEccC
Q psy14542 29 IELHCRVSPKRLSSAKAWLKDGLVLRRN------------------------------------------SDEVLVLDRV 66 (371)
Q Consensus 29 v~l~C~~~~~~~~~~~~W~~~~~~~~~~------------------------------------------~~~~l~i~~~ 66 (371)
+.+.| ..+.|.+...|+.+|..+..+ +..++.|.+.
T Consensus 208 v~~v~--s~gqp~~~~~~~~~g~~i~~~~~~~~s~t~e~s~~~i~~~l~~~~G~~~~~~~~~l~e~~~~~~~~t~~i~~~ 285 (1205)
T KOG0613|consen 208 VRAVV--SAGQPEPLERWEILGELIAPGSAPSMSVTLEASDRKIQLTLRAPRGPYSAHILGYLIEQRKHKGGNTKTIQND 285 (1205)
T ss_pred EEEEE--ecCCCccchhhhhcccccCCCCccccccccchhheeeeEEeecCCCchHHHHhcchhhhcccCCCcccccccc
Confidence 44445 356777888898887766554 3334556666
Q ss_pred CcCCCeEEEEEEEcCCCCeEEEEEEEEec---------------ceeeEec----CCceeeecCCcEEEEEEecCCCCCc
Q psy14542 67 QREDAGMYQCHVSADDDSAQMSAQVILGG---------------ELVEIAS----SNQVVVDVGHRIELHCRVSPKRLSS 127 (371)
Q Consensus 67 ~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~---------------~~~~~~~----~~~~~~~~g~~v~l~C~~~~~~~~~ 127 (371)
...+.+.|+|...+..++....+...+.. .++.... ........+..+++.|...+...+-
T Consensus 286 ~~~~~~s~t~~~~~~~~q~~~~v~~~~~i~~~~~~p~~~~~aaa~~~~~~v~~~~~~~v~a~d~~~v~m~~~~~~~~~p~ 365 (1205)
T KOG0613|consen 286 GPEPELSWTVADKRQGCQDRFKVTEEAPIGKGKPGPESLQAAAARPPEVPVGLVRNLSVTARDNTLVEMPTALSGTQKPD 365 (1205)
T ss_pred CCccccceeeecccCCcccceeeeEEeeccccccCchhhhhhccCCccccccccccceeccccCcceeecccccCCcCCc
Confidence 66777888888877776665443333321 1111111 1111225567889999988887745
Q ss_pred eEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeeec
Q psy14542 128 AKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVN 207 (371)
Q Consensus 128 ~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~ 207 (371)
.+.|++++..............+ ...+..+.|..+...+ .+.|.|.+.|. .|......
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~-------------------~~ts~~~~~~~~~~~e-~~~~~~~a~n~-~g~~~~~~- 423 (1205)
T KOG0613|consen 366 EAQGYHGEEVSSESLGALPCPVG-------------------TVTSHTYTIKDAGPGE-GYFTRVPAVNK-GGTEQTIA- 423 (1205)
T ss_pred hheeecccccccccccccccccc-------------------cccCcchhhhhcCccc-ccccccceecc-CCcccccc-
Confidence 59999877655443321111100 0111467788888999 99999999998 66544443
Q ss_pred cceeeeecchhccccceeeeeeeee-eeecCCeEEEEEEeecCCCC--ceEEEeCCcccccCCc-e-EEecceEEEeccC
Q psy14542 208 RGRLSLTENKRLLSAAKMFEKHRIL-NVKKDESVILPCSAQGNPLP--TIKWYKQDSPVEESDR-I-QRIGSSLSISHVE 282 (371)
Q Consensus 208 ~~~l~v~~~~~~~~p~~~~~~~~~~-~~~~g~~~~l~C~~~~~p~~--~v~W~~~~~~~~~~~~-~-~~~~~~l~i~~~~ 282 (371)
...+........+.......... .+..-+.+.+.|...+.+.+ .++|++++.+...... . ...-.+|.+....
T Consensus 424 --~~~vs~~~~gt~~~~~kk~~~~t~~L~~~~~i~~~~~~~s~~~~~~~~tt~~~~~~~s~~s~~l~r~~~tslLlk~~~ 501 (1205)
T KOG0613|consen 424 --ESTVSEEMPGTQPPKFKKDVSTTDLLTVKDEITVRTPDSSTSMPMTTVTTIKDGLPLSDRSVTLTRDVLTSLLLKVAS 501 (1205)
T ss_pred --hhhcccccCCCCCccccccccccccccCCcccccccCCCCccccceeEeeccCCcccccccccccccchhhheeeccC
Confidence 33344322222222222222222 12233778888988877755 3455555443322111 0 0122357777778
Q ss_pred CCCCeEEEEEEEcCCCC
Q psy14542 283 ESDSGVWNCVANNSEGQ 299 (371)
Q Consensus 283 ~~d~G~Y~C~a~n~~g~ 299 (371)
..|+|.|.-......+.
T Consensus 502 ~~~~A~~~~a~~~~~~k 518 (1205)
T KOG0613|consen 502 LSDGAQYTRALRTLQGK 518 (1205)
T ss_pred CCccchhhhhhhccCCC
Confidence 88888886655544444
No 386
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=96.55 E-value=0.0016 Score=46.19 Aligned_cols=76 Identities=14% Similarity=0.323 Sum_probs=44.3
Q ss_pred eecCCeEEEEEEeecC-----CCCceEEEeCCcccccCC----ce-------------EEecceEEEeccCCCCCeEEEE
Q psy14542 234 VKKDESVILPCSAQGN-----PLPTIKWYKQDSPVEESD----RI-------------QRIGSSLSISHVEESDSGVWNC 291 (371)
Q Consensus 234 ~~~g~~~~l~C~~~~~-----p~~~v~W~~~~~~~~~~~----~~-------------~~~~~~l~i~~~~~~d~G~Y~C 291 (371)
..-.+++.|.|.+..- +...+.|..+|..+..-. +. ...+.+|.+.....- .|+|+|
T Consensus 24 t~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYTC 102 (130)
T PF08204_consen 24 TVCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYTC 102 (130)
T ss_dssp -TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEEE
T ss_pred EecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceEE
Confidence 5667899999998642 223589998877542110 00 011235777765444 899999
Q ss_pred EEEcCCCCceeEEEEEEec
Q psy14542 292 VANNSEGQDKMQLFIQYAH 310 (371)
Q Consensus 292 ~a~n~~g~~~~~~~l~v~~ 310 (371)
.+.....+....+.|+...
T Consensus 103 eVt~~~~ege~~i~Lk~~~ 121 (130)
T PF08204_consen 103 EVTELSREGETTIELKYRV 121 (130)
T ss_dssp EEEETTEEEEEEEEEEE--
T ss_pred EEEecCCCceEEEEEEEEE
Confidence 9998888777777777643
No 387
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=96.47 E-value=0.075 Score=36.09 Aligned_cols=38 Identities=21% Similarity=0.330 Sum_probs=30.1
Q ss_pred CeeEEEEccCCcCCCeEEEEEEEcCCCCe-EEEEEEEEe
Q psy14542 57 SDEVLVLDRVQREDAGMYQCHVSADDDSA-QMSAQVILG 94 (371)
Q Consensus 57 ~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~v~ 94 (371)
.+..|.|+.++..|+|.|.-.+++..|.. ...+.|.|.
T Consensus 69 enlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsVF 107 (108)
T PF11465_consen 69 ENLALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSVF 107 (108)
T ss_dssp TTTEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEEE
T ss_pred cCceEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEee
Confidence 77899999999999999999999988876 355666664
No 388
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=96.43 E-value=0.05 Score=46.00 Aligned_cols=119 Identities=15% Similarity=0.302 Sum_probs=77.5
Q ss_pred eCCCcEEEeccCcEEEEEEecC-C-CCCCeeEEEeCCEEEeeC--------------------------------CeeEE
Q psy14542 16 SPSGQVVVDVGHRIELHCRVSP-K-RLSSAKAWLKDGLVLRRN--------------------------------SDEVL 61 (371)
Q Consensus 16 ~p~~~~~~~~G~~v~l~C~~~~-~-~~~~~~~W~~~~~~~~~~--------------------------------~~~~l 61 (371)
.+-..+.+..|..+.|.|..+. + .......|+..|-++.+- ..++|
T Consensus 269 k~~~~~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STL 348 (500)
T PHA02914 269 KKFDEVMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTL 348 (500)
T ss_pred cccceeEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceE
Confidence 3444467788999999996543 2 224458998654333211 56799
Q ss_pred EEccCCcCCCeEEEEEEEcCCCCeEEEEEEEEecceeeEecCCceeeecCCc-EEEEEEecCC-CCCceEEEeeCCEEee
Q psy14542 62 VLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGELVEIASSNQVVVDVGHR-IELHCRVSPK-RLSSAKAWLKDGLVLR 139 (371)
Q Consensus 62 ~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~-v~l~C~~~~~-~~~~~v~W~~~~~~~~ 139 (371)
+|.++..+.+|-|.|++.........+-.|.|. ....+.- ..+|.. -.+.|-+... ..++.+.|.-+|....
T Consensus 349 TIkka~I~N~GCY~~~a~~g~~~~ec~~Cl~V~-d~V~f~W-----~~e~~n~T~V~Cyv~sy~~kp~si~wkvnGV~~~ 422 (500)
T PHA02914 349 TIKKAHINNAGCYEAQAFMGKFKEECRHCFKVA-DHVFFKW-----NTEGDNETKVACYAAQYDMQPFSILWKSNGVSFG 422 (500)
T ss_pred EeeeEEEEcCCceEEEEecCcchhhhhhheEec-cEEEEEE-----EeccCceEEEEEEEEecccCCceeEEEEccEEec
Confidence 999999999999999998765555555666665 2221111 124333 4568988655 3447899998887654
Q ss_pred e
Q psy14542 140 R 140 (371)
Q Consensus 140 ~ 140 (371)
.
T Consensus 423 G 423 (500)
T PHA02914 423 G 423 (500)
T ss_pred C
Confidence 4
No 389
>PHA03042 CD47-like protein; Provisional
Probab=96.36 E-value=0.02 Score=45.76 Aligned_cols=73 Identities=19% Similarity=0.280 Sum_probs=49.9
Q ss_pred eecCCeEEEEEEeecC-----CCCceEEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEE
Q psy14542 234 VKKDESVILPCSAQGN-----PLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQY 308 (371)
Q Consensus 234 ~~~g~~~~l~C~~~~~-----p~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 308 (371)
..-.+++.+.|.+..- ....+.|..++..+...... +.++|.+... ..-.|+|+|+|.+...+....+.|+.
T Consensus 28 T~CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~t--n~aSL~~~f~-~~l~GNYTCEv~~l~n~gk~~IeLk~ 104 (286)
T PHA03042 28 TTCNKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNT--NTSSLKFNFS-KNLSGNYTCEAINKFNKIKNTIELQY 104 (286)
T ss_pred EecCceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCC--cceEEEEecc-ccCCCceeEEEeecccCccEEEEEEE
Confidence 5567889999998642 34469999998876544332 2345666543 34589999999987666666666655
Q ss_pred e
Q psy14542 309 A 309 (371)
Q Consensus 309 ~ 309 (371)
.
T Consensus 105 ~ 105 (286)
T PHA03042 105 V 105 (286)
T ss_pred E
Confidence 4
No 390
>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily. They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.
Probab=96.22 E-value=0.099 Score=34.77 Aligned_cols=81 Identities=17% Similarity=0.240 Sum_probs=54.5
Q ss_pred cceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEe--CCEEEeeC-CeeEEEEccCCcCCCeEEEEEEEcCCCCeE
Q psy14542 10 SLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLK--DGLVLRRN-SDEVLVLDRVQREDAGMYQCHVSADDDSAQ 86 (371)
Q Consensus 10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~--~~~~~~~~-~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~ 86 (371)
.+.+.+.|+. ..|..|+++.+.|..+-..| ..+.|.- ....+..+ .-..+.+.+++. | ..-.|.+...+.+..
T Consensus 3 ~f~v~v~P~~-~vV~~G~Sv~VNCStsC~~p-~~~GLET~L~k~~~~~g~~W~~f~LsnV~~-d-s~~~C~~~C~g~Q~~ 78 (91)
T PF03921_consen 3 AFEVRVSPEE-PVVPPGGSVWVNCSTSCPQP-EKIGLETSLSKTELDSGPQWKAFQLSNVTE-D-SSPLCFFNCSGEQSS 78 (91)
T ss_dssp -S-EEEESSE-EEEETTEEEEEEEEESSSS--SEEEEESSSEEEEEEEETTEEEEEEEEE-S-C-EEEEEEEEETTEEEE
T ss_pred ceEEEEECCc-cEECCCCCEEEEEcCCCCCC-CcceEEEecCCcccCCCCcEEEEEEEcccc-C-CeEEEEEEcCCeEEE
Confidence 4568889999 99999999999996543333 2355532 22233222 455788889986 4 466899998766667
Q ss_pred EEEEEEEe
Q psy14542 87 MSAQVILG 94 (371)
Q Consensus 87 ~~~~l~v~ 94 (371)
+++.|+|+
T Consensus 79 ~~~~ItVY 86 (91)
T PF03921_consen 79 ASANITVY 86 (91)
T ss_dssp EEEEEEEE
T ss_pred eEEeeEEe
Confidence 88999998
No 391
>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []. EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.
Probab=96.09 E-value=0.5 Score=36.95 Aligned_cols=139 Identities=14% Similarity=0.163 Sum_probs=69.8
Q ss_pred ceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeee-
Q psy14542 127 SAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLS- 205 (371)
Q Consensus 127 ~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~- 205 (371)
..++|+.+|..+..... ....... .+|.++ ..+.|.+......+..-..+|.+.-. ......+
T Consensus 7 ~~~~Wf~dg~~v~~~~~--~~~~~~~-----------~~G~~s--~vStl~~~~~~~~~~pp~i~C~v~W~-r~~v~~~r 70 (211)
T PF02124_consen 7 VRFRWFEDGNPVEPRFI--RDSSQVW-----------SDGLFS--RVSTLTLPGNSADSPPPSIRCQVTWY-RDSVSETR 70 (211)
T ss_pred EEEEEEECCEeCCccce--eeEEEEe-----------cCCcEE--EEEEEEecCCCCCCCCCcceEEEEEc-cCCCeeeE
Confidence 68999999997764321 1111111 112222 22566664433333366899998765 2222111
Q ss_pred -eccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecCCC--CceEEEeCCcccccCCceEE------ecceE
Q psy14542 206 -VNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPL--PTIKWYKQDSPVEESDRIQR------IGSSL 276 (371)
Q Consensus 206 -~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~--~~v~W~~~~~~~~~~~~~~~------~~~~l 276 (371)
.+...-.|. .+|.+....... ...|.+.--|. ..+.|.-++........... .-+..
T Consensus 71 ~~a~~~P~Vy-----~~P~vsv~F~~g---------~AVC~A~CVP~~~v~l~W~v~d~~~~~~~~~~~~g~C~~~pglv 136 (211)
T PF02124_consen 71 FNATATPSVY-----PKPRVSVRFEDG---------YAVCTARCVPRGNVTLRWSVGDDPSPAPAATEITGVCAEHPGLV 136 (211)
T ss_pred eeccccccee-----cCCEEEEEecCC---------EEEEEcceeeCCCeEEEEEECCccCCCCCceeecCcccCCccee
Confidence 111122333 566665433222 23477655442 67999988875433222221 12345
Q ss_pred EEeccC--CCCCe--EEEEEEEc
Q psy14542 277 SISHVE--ESDSG--VWNCVANN 295 (371)
Q Consensus 277 ~i~~~~--~~d~G--~Y~C~a~n 295 (371)
.|.+.. ....| +|+|++..
T Consensus 137 nirs~~pls~~~~~~~YtC~l~G 159 (211)
T PF02124_consen 137 NIRSRRPLSDEDGPVEYTCRLIG 159 (211)
T ss_pred EeecccCCCccCCceeEEEEEee
Confidence 555443 22345 99999864
No 392
>PHA02982 hypothetical protein; Provisional
Probab=96.07 E-value=0.1 Score=40.08 Aligned_cols=130 Identities=12% Similarity=0.218 Sum_probs=68.7
Q ss_pred ecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCC-eeEEEEcc---cCcCCCeeEEEEEeCCceeEeccceEEEEEeecC
Q psy14542 109 DVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNS-DEVLVLDR---VQREDAGMYQCHIEDGKYHMLSSGELIIHQVDES 184 (371)
Q Consensus 109 ~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~-~~~~~~~~---~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~ 184 (371)
..+++|.|.|.......-....|+++....-.+. .....++. ........|..... ...++|+|.++...
T Consensus 37 ~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~------g~~STLTIkk~~i~ 110 (251)
T PHA02982 37 TVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVS------GNSSTFTMKKPDPQ 110 (251)
T ss_pred cCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEe------ccceeEEeccCCcc
Confidence 6799999999986655446789988543221110 00011111 01111112221111 13478999999999
Q ss_pred CccceeEEEeeccccceeee-eeccceeeeecchhccccceeeeeeeeeeeecC-CeEEEEEEeecCCCCceEEEeCCc
Q psy14542 185 DRYRSYQCRGVNKLTGASLL-SVNRGRLSLTENKRLLSAAKMFEKHRILNVKKD-ESVILPCSAQGNPLPTIKWYKQDS 261 (371)
Q Consensus 185 d~~g~y~C~~~~~~~~~~~~-~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g-~~~~l~C~~~~~p~~~v~W~~~~~ 261 (371)
. .|-|+|++... .+.... .. -+.|+.. ...+. ...+ ....++|-+......-..|.-+|.
T Consensus 111 N-~GCYtc~~ks~-~~k~E~c~k---Cl~V~~~----~V~~~--------W~e~nNeT~V~CyVgS~~~dvp~W~V~GV 172 (251)
T PHA02982 111 N-LGCFTCEAKDA-EGKEETCEK---CLEIQKE----DILYV--------VEEHNNETIITCFVGSKHGDVPRFIVAGI 172 (251)
T ss_pred c-CCceEEEEecC-CCchheehe---eeeEecc----eEEEE--------EEecCCeEEEEEEEEeccCCCccEEEeeE
Confidence 9 99999999875 332222 22 4445211 11111 1122 335678987654433348887664
No 393
>PHA03042 CD47-like protein; Provisional
Probab=95.99 E-value=0.058 Score=43.25 Aligned_cols=69 Identities=12% Similarity=0.221 Sum_probs=45.6
Q ss_pred EeccCcEEEEEEecCC----CCCCeeEEEeCCEEEeeC---CeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEEEEE
Q psy14542 23 VDVGHRIELHCRVSPK----RLSSAKAWLKDGLVLRRN---SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVI 92 (371)
Q Consensus 23 ~~~G~~v~l~C~~~~~----~~~~~~~W~~~~~~~~~~---~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~ 92 (371)
-.-.+++.++|.+..- .....+.|..++..+-.. ...+|.+... ..-.|+|+|.+.+..++....+.|.
T Consensus 28 T~CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~tn~aSL~~~f~-~~l~GNYTCEv~~l~n~gk~~IeLk 103 (286)
T PHA03042 28 TTCNKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNTNTSSLKFNFS-KNLSGNYTCEAINKFNKIKNTIELQ 103 (286)
T ss_pred EecCceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCCcceEEEEecc-ccCCCceeEEEeecccCccEEEEEE
Confidence 3457889999965531 124559999999877653 3345666533 3348999999997666555555444
No 394
>KOG4597|consensus
Probab=95.98 E-value=0.015 Score=50.16 Aligned_cols=89 Identities=17% Similarity=0.188 Sum_probs=65.4
Q ss_pred cceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEe---CCccccc--CCc----eEEecceEEEeccCCCCCeEEEEE
Q psy14542 222 AAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYK---QDSPVEE--SDR----IQRIGSSLSISHVEESDSGVWNCV 292 (371)
Q Consensus 222 p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~---~~~~~~~--~~~----~~~~~~~l~i~~~~~~d~G~Y~C~ 292 (371)
+.+...+.... +..+++.+++|-+.|.+.+.|+|.+ |+..+.. ... .......|.|-+....|+|.|+|.
T Consensus 197 c~l~~cpa~w~-vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~~nq~~e~p~vtstcql~ic~ewq~~a~w~tCs 275 (560)
T KOG4597|consen 197 CALVDCPAEWF-VGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMRPNQTVENPVVTSTCQLVICNEWQADAGWYTCS 275 (560)
T ss_pred cccccCcchhh-cccchhhcccccccCCcCceeeeehhhccccceeecCccccCCcceeeeeeEEEcchhhcCCCceeec
Confidence 34444455555 8889999999999999999999975 3332211 111 112335689999999999999999
Q ss_pred EEcCCCCceeEEEEEEecC
Q psy14542 293 ANNSEGQDKMQLFIQYAHG 311 (371)
Q Consensus 293 a~n~~g~~~~~~~l~v~~~ 311 (371)
+.+..|...+.+.+.+...
T Consensus 276 ~rcg~g~~~rdv~c~s~~g 294 (560)
T KOG4597|consen 276 ARCGAGFLRRDVPCSSVKG 294 (560)
T ss_pred cccccceeeccceeeeecc
Confidence 9999999999888877643
No 395
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=95.79 E-value=0.017 Score=45.99 Aligned_cols=47 Identities=21% Similarity=0.405 Sum_probs=36.6
Q ss_pred CCceEEEeCCc-ccccCCceE-EecceEEEeccCCCCCeEEEEEEEcCC
Q psy14542 251 LPTIKWYKQDS-PVEESDRIQ-RIGSSLSISHVEESDSGVWNCVANNSE 297 (371)
Q Consensus 251 ~~~v~W~~~~~-~~~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~a~n~~ 297 (371)
.|.+.|...++ .+....++. ...+.|.+.+...+++|.|+|..+...
T Consensus 12 DP~y~W~GP~g~~l~gn~~~nIT~TG~L~~~~F~esmSG~YTCtLsYk~ 60 (271)
T PF07354_consen 12 DPTYLWTGPNGKPLSGNSYVNITETGKLMFKNFQESMSGSYTCTLSYKP 60 (271)
T ss_pred CCceEEECCCCcccCCCCeEEEccCceEEeeccccccCCceEEEEEEEe
Confidence 47899997654 555555555 456789999999999999999998654
No 396
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=94.94 E-value=0.18 Score=32.77 Aligned_cols=69 Identities=14% Similarity=0.209 Sum_probs=40.7
Q ss_pred EeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeCCeeEEEEccCCcCCCeEEEEEEE-cCCCCeEEEEEEEE
Q psy14542 23 VDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHVS-ADDDSAQMSAQVIL 93 (371)
Q Consensus 23 ~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~-~~~~~~~~~~~l~v 93 (371)
+..|+.+.+.-.- ...-.+.+.|+..+..... ....+.....+..|+|.+.|.|. +..........|.|
T Consensus 9 ~l~~e~L~~tl~~-~~~~~~~~~l~~~~~k~~~-~~~~~~~~~~~~~d~G~w~C~a~~~~~k~~~s~~~i~v 78 (80)
T PF05790_consen 9 VLPCEVLELTLEK-PPGMKPSLFLENPGKKSLE-TKKLVSTFTPTTEDSGTWVCTASDNEPKERESKIEILV 78 (80)
T ss_dssp EEEEEEESECEEE-TTTECEEEEEECSSCEEEE-ESSEEEEESBTCGGSEEEEEEEEECTTEEEEEEEEEEE
T ss_pred EeeeeeEEEEEcC-CCCCChhheeeccCccccc-cceEEEEecCCCCCCEEEEEEEcCCceEEEEEEEEEEc
Confidence 4455555554422 2222456778776655443 45566777888899999999995 33223334444443
No 397
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=94.52 E-value=0.042 Score=43.89 Aligned_cols=43 Identities=21% Similarity=0.366 Sum_probs=33.0
Q ss_pred CCCCeeEEEeCC-EEEeeC------CeeEEEEccCCcCCCeEEEEEEEcC
Q psy14542 39 RLSSAKAWLKDG-LVLRRN------SDEVLVLDRVQREDAGMYQCHVSAD 81 (371)
Q Consensus 39 ~~~~~~~W~~~~-~~~~~~------~~~~l~i~~~~~~d~G~Y~C~~~~~ 81 (371)
-.+|.+.|...+ +.+... ..+.|.+.+...+++|.|+|.....
T Consensus 10 ~iDP~y~W~GP~g~~l~gn~~~nIT~TG~L~~~~F~esmSG~YTCtLsYk 59 (271)
T PF07354_consen 10 LIDPTYLWTGPNGKPLSGNSYVNITETGKLMFKNFQESMSGSYTCTLSYK 59 (271)
T ss_pred cCCCceEEECCCCcccCCCCeEEEccCceEEeeccccccCCceEEEEEEE
Confidence 357889998843 333322 7788999999999999999998743
No 398
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=93.63 E-value=0.59 Score=30.42 Aligned_cols=51 Identities=22% Similarity=0.308 Sum_probs=32.2
Q ss_pred CceEEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEE-EcCCCCceeEEEEEE
Q psy14542 252 PTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVA-NNSEGQDKMQLFIQY 308 (371)
Q Consensus 252 ~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a-~n~~g~~~~~~~l~v 308 (371)
+.+.|...+..... ....+.......+|+|.+.|.| .+..-.......|.|
T Consensus 27 ~~~~l~~~~~k~~~------~~~~~~~~~~~~~d~G~w~C~a~~~~~k~~~s~~~i~v 78 (80)
T PF05790_consen 27 PSLFLENPGKKSLE------TKKLVSTFTPTTEDSGTWVCTASDNEPKERESKIEILV 78 (80)
T ss_dssp EEEEEECSSCEEEE------ESSEEEEESBTCGGSEEEEEEEEECTTEEEEEEEEEEE
T ss_pred hhheeeccCccccc------cceEEEEecCCCCCCEEEEEEEcCCceEEEEEEEEEEc
Confidence 45677655443322 2345666778889999999999 555544555555544
No 399
>KOG4597|consensus
Probab=93.45 E-value=0.15 Score=44.37 Aligned_cols=73 Identities=15% Similarity=0.058 Sum_probs=57.6
Q ss_pred EEEeccCcEEEEEEecCCCCCCeeEEEe---CCEEEeeC-----------CeeEEEEccCCcCCCeEEEEEEEcCCCCeE
Q psy14542 21 VVVDVGHRIELHCRVSPKRLSSAKAWLK---DGLVLRRN-----------SDEVLVLDRVQREDAGMYQCHVSADDDSAQ 86 (371)
Q Consensus 21 ~~~~~G~~v~l~C~~~~~~~~~~~~W~~---~~~~~~~~-----------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~ 86 (371)
-.+..|++..++| -..+.+...|.|.+ |+..+... ....|.|-+....|+|.|+|.+.+..|...
T Consensus 206 w~vg~wetcS~tC-g~~G~q~r~V~c~qv~anr~~vv~~~nq~~e~p~vtstcql~ic~ewq~~a~w~tCs~rcg~g~~~ 284 (560)
T KOG4597|consen 206 WFVGDWETCSSTC-GVQGRQYRVVTCEQVFANRENVVMRPNQTVENPVVTSTCQLVICNEWQADAGWYTCSARCGAGFLR 284 (560)
T ss_pred hhcccchhhcccc-cccCCcCceeeeehhhccccceeecCccccCCcceeeeeeEEEcchhhcCCCceeeccccccceee
Confidence 5678899999999 55677888999976 33332222 667899999999999999999999888877
Q ss_pred EEEEEEEe
Q psy14542 87 MSAQVILG 94 (371)
Q Consensus 87 ~~~~l~v~ 94 (371)
..+.+.+.
T Consensus 285 rdv~c~s~ 292 (560)
T KOG4597|consen 285 RDVPCSSV 292 (560)
T ss_pred ccceeeee
Confidence 77776664
No 400
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=93.35 E-value=0.48 Score=31.59 Aligned_cols=64 Identities=19% Similarity=0.414 Sum_probs=41.1
Q ss_pred EeCCCcEEEeccCcEEEEEEecCCC----CCCeeEEEeCCEEEeeC-------CeeEEEEccCCcCCCeEEEEEEE
Q psy14542 15 MSPSGQVVVDVGHRIELHCRVSPKR----LSSAKAWLKDGLVLRRN-------SDEVLVLDRVQREDAGMYQCHVS 79 (371)
Q Consensus 15 ~~p~~~~~~~~G~~v~l~C~~~~~~----~~~~~~W~~~~~~~~~~-------~~~~l~i~~~~~~d~G~Y~C~~~ 79 (371)
+.|+. ..+..|+++++.|....+- ....+.|..++..++.. ..+++++.+.....+-.|-|...
T Consensus 8 i~p~~-pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~~qy~~in~~~SsVT~~~~~~~~~~L~cC~l~ 82 (89)
T PF06328_consen 8 ISPPS-PVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPGSQYRVINDTVSSVTLPNLNPTGATLFCCKLA 82 (89)
T ss_dssp EECSS-SEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCESTCGCEEEESTTEEEEEESS--SSEEEEEEEEEC
T ss_pred EecCC-CEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECChhHcceeCCeEEEEEEccCCCCCceEEEEEEc
Confidence 34555 5789999999999665432 34569999988766554 44667777766655556777643
No 401
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=92.91 E-value=0.48 Score=39.99 Aligned_cols=22 Identities=23% Similarity=0.481 Sum_probs=18.6
Q ss_pred cEEEEEEecCC-CCCceEEEeeC
Q psy14542 113 RIELHCRVSPK-RLSSAKAWLKD 134 (371)
Q Consensus 113 ~v~l~C~~~~~-~~~~~v~W~~~ 134 (371)
.++|+|.+.|+ |....+.|.++
T Consensus 216 ~~tL~C~A~GFYP~~I~v~W~kd 238 (338)
T PHA02865 216 NTTLFCTFDSHYPSSVAAKWYNS 238 (338)
T ss_pred CceEEEEEEeEeCCccEEEEEec
Confidence 57999999987 44578999999
No 402
>PRK14081 triple tyrosine motif-containing protein; Provisional
Probab=92.32 E-value=10 Score=35.78 Aligned_cols=277 Identities=10% Similarity=0.025 Sum_probs=139.5
Q ss_pred EeccCcEEEEEEec-CCCCCCeeEEEe---CCEEEeeC---CeeEEEEccCCcCCCeEEE--EEEEcCCC----CeEEEE
Q psy14542 23 VDVGHRIELHCRVS-PKRLSSAKAWLK---DGLVLRRN---SDEVLVLDRVQREDAGMYQ--CHVSADDD----SAQMSA 89 (371)
Q Consensus 23 ~~~G~~v~l~C~~~-~~~~~~~~~W~~---~~~~~~~~---~~~~l~i~~~~~~d~G~Y~--C~~~~~~~----~~~~~~ 89 (371)
+..|+.+.|.-.+. .+.....+...+ +|...... ....+. -.+..+|.|+ |.+..... .+.+.+
T Consensus 203 ~i~~~eI~f~~~a~~~~g~~~LYKF~~i~~~G~~~~~qdYst~n~~~---y~~~~~G~Y~i~~~VKD~~S~~eyDD~~~l 279 (667)
T PRK14081 203 LICDEELVFEVESVYEEDRTILYKFVKIDSDGKQTCIQDYSTKNIVS---YKEKKSGDYKLLCLVKDMYSNNEFDDRAVL 279 (667)
T ss_pred eecCcEEEEEEEEEeCCCceEEEEEEEECCCCCEEEecCccccceEE---EEeCCCccEEEEEEEeccCcccccccceEE
Confidence 55688888884322 222233455544 55444333 222333 3356899885 55543322 234555
Q ss_pred EEEEecc-eeeE---ecCCceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeC
Q psy14542 90 QVILGGE-LVEI---ASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIED 165 (371)
Q Consensus 90 ~l~v~~~-~~~~---~~~~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~ 165 (371)
...|... ++.+ ..........|+.+.|...+.|... ..+++.-.|.......-..
T Consensus 280 ~y~Vk~~~~vkI~~~~~d~~s~ql~g~~I~ika~a~GG~~-llYrf~I~G~~~e~~~Y~~-------------------- 338 (667)
T PRK14081 280 VYTVKPYKDIKIRNFTTDLSSPQLTDTDIELKAVAEGGKE-LLYRFIIKGKESEDSGYIR-------------------- 338 (667)
T ss_pred EEEEecCCCcEEEEEEEcCCCCeecCceEEEEEEecCCCc-eEEEEEECCcEEeeccccc--------------------
Confidence 5555422 2222 3333334468999999999988765 6777766665544322100
Q ss_pred CceeEeccceEEEEEeecCCccceeEEEeecccccee--eeeeccceeeeecchhccccc-eee--eeeeeeeeecCCeE
Q psy14542 166 GKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGAS--LLSVNRGRLSLTENKRLLSAA-KMF--EKHRILNVKKDESV 240 (371)
Q Consensus 166 ~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~--~~~~~~~~l~v~~~~~~~~p~-~~~--~~~~~~~~~~g~~~ 240 (371)
+..+.+. +.. .|.|.-.+.-...... ........+.+.... ..|. +.. .+.... ...|+.+
T Consensus 339 -------~n~~~w~---P~~-~G~Y~I~v~VKDk~S~~eyD~~~~v~f~i~~~~--~~p~~I~~vl~d~~~~-~lvG~~i 404 (667)
T PRK14081 339 -------NNIYTWK---PKI-AGKYSITLWVKDISSKGEYEDKSSIDYTIEEKS--KEPIKIEDVILDKGKH-ILKGEEI 404 (667)
T ss_pred -------cceEEEe---eCC-CceEEEEEEEEcCcCcccccceEEEEEEEcccC--CCCeEEEEEEECCCCc-eEeCCeE
Confidence 0112221 223 5666665543311110 000001133443210 1221 111 111223 7789999
Q ss_pred EEEEEeecCCCCceE-EE-eCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCC--C----ceeEEEEEEecCc
Q psy14542 241 ILPCSAQGNPLPTIK-WY-KQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEG--Q----DKMQLFIQYAHGK 312 (371)
Q Consensus 241 ~l~C~~~~~p~~~v~-W~-~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g--~----~~~~~~l~v~~~p 312 (371)
.+.|.+.+.-...+. |. ++|..+...+ ...+..+.+. +.-+|.|+-.+.-... . ....+.+.|.+..
T Consensus 405 ~i~v~a~gg~~~lY~f~ik~ng~~ve~~~--Y~~~~~~~f~---P~~~G~Y~IeV~vKdk~S~~~yD~~k~v~l~V~e~~ 479 (667)
T PRK14081 405 KIRVIAEGGTNLRYSFIIKKDGKEEEKID--YGKNNWVNFI---PEEKGNYELEVRVKDKYSDKEYDAHTIVYIKVHEYI 479 (667)
T ss_pred EEEEEecCCCeEEEEEEEEECCEEEEEee--cccccEEEEE---ECCCeeEEEEEEEecccCchhcccceEEEEEEeccC
Confidence 999999875444432 33 4555443321 1223345544 4568999987763332 2 3566778887644
Q ss_pred ccccccceEEEEeeeeccccccccccccccceeeeeecCCeEEEeeeeecC
Q psy14542 313 YHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKDESVILPCSAQGN 363 (371)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~ 363 (371)
+.. +..+..|... ....|+.++|.|.+++.
T Consensus 480 P~~-------i~~il~~~~~--------------~~~vg~~i~~~~~~~~~ 509 (667)
T PRK14081 480 PAE-------IDYILLPVKE--------------YYLVGDDIEIEVIIQNT 509 (667)
T ss_pred cee-------eeeEEecccc--------------cEEeCCEEEEEEEEeCC
Confidence 410 2222222221 45689999999999874
No 403
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=92.08 E-value=0.42 Score=40.32 Aligned_cols=22 Identities=23% Similarity=0.465 Sum_probs=17.8
Q ss_pred cEEEEEEecCCCCC-CeeEEEeC
Q psy14542 28 RIELHCRVSPKRLS-SAKAWLKD 49 (371)
Q Consensus 28 ~v~l~C~~~~~~~~-~~~~W~~~ 49 (371)
.++|+|.+...+|. ..+.|.|+
T Consensus 216 ~~tL~C~A~GFYP~~I~v~W~kd 238 (338)
T PHA02865 216 NTTLFCTFDSHYPSSVAAKWYNS 238 (338)
T ss_pred CceEEEEEEeEeCCccEEEEEec
Confidence 58999988776664 46999999
No 404
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=92.03 E-value=0.5 Score=32.23 Aligned_cols=38 Identities=18% Similarity=0.251 Sum_probs=29.2
Q ss_pred EecceEEEeccCCCCCeEEEEEEEcCCCCc-eeEEEEEE
Q psy14542 271 RIGSSLSISHVEESDSGVWNCVANNSEGQD-KMQLFIQY 308 (371)
Q Consensus 271 ~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~v 308 (371)
..+-.|.|+.++..|+|.|.-++++..|.. ...+.+.|
T Consensus 68 ~enlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsV 106 (108)
T PF11465_consen 68 SENLALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSV 106 (108)
T ss_dssp TTTTEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEE
T ss_pred ccCceEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEe
Confidence 345689999999999999999999999986 44455555
No 405
>PRK14081 triple tyrosine motif-containing protein; Provisional
Probab=88.20 E-value=24 Score=33.46 Aligned_cols=272 Identities=13% Similarity=0.052 Sum_probs=148.6
Q ss_pred EEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC---CeeEEEEccCCcCCCeEEEEEEEcCCC------CeEEEEEEE
Q psy14542 22 VVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN---SDEVLVLDRVQREDAGMYQCHVSADDD------SAQMSAQVI 92 (371)
Q Consensus 22 ~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~---~~~~l~i~~~~~~d~G~Y~C~~~~~~~------~~~~~~~l~ 92 (371)
....|+.+.|...+..+. ...+...-.|..+... ....+.. +++.+|.|.-.+.-.+. .+...+.+.
T Consensus 301 ~ql~g~~I~ika~a~GG~-~llYrf~I~G~~~e~~~Y~~~n~~~w---~P~~~G~Y~I~v~VKDk~S~~eyD~~~~v~f~ 376 (667)
T PRK14081 301 PQLTDTDIELKAVAEGGK-ELLYRFIIKGKESEDSGYIRNNIYTW---KPKIAGKYSITLWVKDISSKGEYEDKSSIDYT 376 (667)
T ss_pred CeecCceEEEEEEecCCC-ceEEEEEECCcEEeeccccccceEEE---eeCCCceEEEEEEEEcCcCcccccceEEEEEE
Confidence 457899999999665544 4445544456555443 3333333 34579999988874322 124556666
Q ss_pred Eecc--ee-e---EecCCceeeecCCcEEEEEEecCCCCCceEEE--eeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEe
Q psy14542 93 LGGE--LV-E---IASSNQVVVDVGHRIELHCRVSPKRLSSAKAW--LKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIE 164 (371)
Q Consensus 93 v~~~--~~-~---~~~~~~~~~~~g~~v~l~C~~~~~~~~~~v~W--~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~ 164 (371)
+... .| . +..........|+.+.+.+.+.+... ..+.+ .++|..+....-
T Consensus 377 i~~~~~~p~~I~~vl~d~~~~~lvG~~i~i~v~a~gg~~-~lY~f~ik~ng~~ve~~~Y--------------------- 434 (667)
T PRK14081 377 IEEKSKEPIKIEDVILDKGKHILKGEEIKIRVIAEGGTN-LRYSFIIKKDGKEEEKIDY--------------------- 434 (667)
T ss_pred EcccCCCCeEEEEEEECCCCceEeCCeEEEEEEecCCCe-EEEEEEEEECCEEEEEeec---------------------
Confidence 6532 22 2 22333344578999999999988754 55544 336665543210
Q ss_pred CCceeEeccceEEEEEeecCCccceeEEEeeccccc-----eeeeeeccceeeeecchhccccc-ee--eeeeeeeeeec
Q psy14542 165 DGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTG-----ASLLSVNRGRLSLTENKRLLSAA-KM--FEKHRILNVKK 236 (371)
Q Consensus 165 ~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~-----~~~~~~~~~~l~v~~~~~~~~p~-~~--~~~~~~~~~~~ 236 (371)
. .+..+.+. +.- +|.|+-.+.....- .....+ .+.|.+ ..|. +. ..+.... ...
T Consensus 435 ----~--~~~~~~f~---P~~-~G~Y~IeV~vKdk~S~~~yD~~k~v---~l~V~e----~~P~~i~~il~~~~~~-~~v 496 (667)
T PRK14081 435 ----G--KNNWVNFI---PEE-KGNYELEVRVKDKYSDKEYDAHTIV---YIKVHE----YIPAEIDYILLPVKEY-YLV 496 (667)
T ss_pred ----c--cccEEEEE---ECC-CeeEEEEEEEecccCchhcccceEE---EEEEec----cCceeeeeEEeccccc-EEe
Confidence 0 00122222 233 78888777654111 112222 555553 2333 22 1232333 788
Q ss_pred CCeEEEEEEeecCCCCceE--EEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCCC------ceeEEEEEE
Q psy14542 237 DESVILPCSAQGNPLPTIK--WYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQ------DKMQLFIQY 308 (371)
Q Consensus 237 g~~~~l~C~~~~~p~~~v~--W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~------~~~~~~l~v 308 (371)
|+.+++.|.+++.....+. -..+|..+...+ + +....+.+. +.-+|.|+..+.-.... ....+.+.|
T Consensus 497 g~~i~~~~~~~~~k~v~y~y~~~~NG~~v~~t~-Y-s~~~~ysf~---P~~~GkY~I~V~aKn~~s~~~~D~~k~v~~~V 571 (667)
T PRK14081 497 GDDIEIEVIIQNTKDVLIKYILKINGHKVEETD-Y-IKNKKYKFI---PKCSGKYTIEVLAKNIKSTEEYDSKKEVKFYV 571 (667)
T ss_pred CCEEEEEEEEeCCCeEEEEEEEEECCEEEEEee-c-cccceEEEe---ecCCceEEEEEEEcccccccccccceEEEEEE
Confidence 9999999998875444333 234444332211 1 123345554 45589999987643332 356677888
Q ss_pred ecCcccccccceEEEEeeeeccccccccccccccceeeeeecCCeEEEeeeeecCC
Q psy14542 309 AHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNP 364 (371)
Q Consensus 309 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p 364 (371)
.++.+ +.+..-. .....+..|+.++|.-.+.|.-
T Consensus 572 ~e~~p---------i~nt~~~-------------~~~~~~~~n~~~t~~~~~~gg~ 605 (667)
T PRK14081 572 REALP---------ITNTKIK-------------TSKKKFKCNEEVTFSVKSEGGK 605 (667)
T ss_pred cCCCC---------ceeeEEE-------------eecceEEcCCeEEEEEEccCCC
Confidence 87766 4422210 0111567889999988777643
No 406
>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []. EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.
Probab=86.97 E-value=13 Score=29.27 Aligned_cols=91 Identities=13% Similarity=0.115 Sum_probs=47.1
Q ss_pred eeEEEeCCEEEeeC---------------CeeEEEEc-cCCcCCCeEEEEEEEcCCC-CeEEEEEEEEecceeeEecCCc
Q psy14542 43 AKAWLKDGLVLRRN---------------SDEVLVLD-RVQREDAGMYQCHVSADDD-SAQMSAQVILGGELVEIASSNQ 105 (371)
Q Consensus 43 ~~~W~~~~~~~~~~---------------~~~~l~i~-~~~~~d~G~Y~C~~~~~~~-~~~~~~~l~v~~~~~~~~~~~~ 105 (371)
.+.|+.||..+... ..++|.+. +...+..=..+|.+.-... .....+.-. ..|.+...|.
T Consensus 8 ~~~Wf~dg~~v~~~~~~~~~~~~~~G~~s~vStl~~~~~~~~~~pp~i~C~v~W~r~~v~~~r~~a~---~~P~Vy~~P~ 84 (211)
T PF02124_consen 8 RFRWFEDGNPVEPRFIRDSSQVWSDGLFSRVSTLTLPGNSADSPPPSIRCQVTWYRDSVSETRFNAT---ATPSVYPKPR 84 (211)
T ss_pred EEEEEECCEeCCccceeeEEEEecCCcEEEEEEEEecCCCCCCCCCcceEEEEEccCCCeeeEeecc---cccceecCCE
Confidence 47787777766544 22344442 2222223467898763222 222222111 2344444555
Q ss_pred eee-ecCCcEEEEEEecCCCCC-ceEEEeeCCEEe
Q psy14542 106 VVV-DVGHRIELHCRVSPKRLS-SAKAWLKDGLVL 138 (371)
Q Consensus 106 ~~~-~~g~~v~l~C~~~~~~~~-~~v~W~~~~~~~ 138 (371)
..+ +++. ...|.+..-+.. ..+.|.-++...
T Consensus 85 vsv~F~~g--~AVC~A~CVP~~~v~l~W~v~d~~~ 117 (211)
T PF02124_consen 85 VSVRFEDG--YAVCTARCVPRGNVTLRWSVGDDPS 117 (211)
T ss_pred EEEEecCC--EEEEEcceeeCCCeEEEEEECCccC
Confidence 555 3222 446887666543 789999877654
No 407
>PHA03052 Hypothetical protein; Provisional
Probab=86.61 E-value=2.5 Score=26.05 Aligned_cols=34 Identities=21% Similarity=0.618 Sum_probs=27.3
Q ss_pred EEEeccCcEEEEEEecCCCC--CCeeEEEeCCEEEe
Q psy14542 21 VVVDVGHRIELHCRVSPKRL--SSAKAWLKDGLVLR 54 (371)
Q Consensus 21 ~~~~~G~~v~l~C~~~~~~~--~~~~~W~~~~~~~~ 54 (371)
+.+..|.+++|.|++.-+.+ ...+.|.-|+..+.
T Consensus 7 i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~e 42 (69)
T PHA03052 7 IVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYYE 42 (69)
T ss_pred EEEEccCCceEeEEEEecCCCcceEEEEEeCCcEEe
Confidence 78899999999998875443 55699998888773
No 408
>PHA03240 envelope glycoprotein M; Provisional
Probab=86.56 E-value=0.63 Score=35.85 Aligned_cols=54 Identities=17% Similarity=0.220 Sum_probs=36.6
Q ss_pred EEEeccCcEEEEEEecCCCCCCeeEEEe-------CC----EEEeeC------------------------CeeEEEEcc
Q psy14542 21 VVVDVGHRIELHCRVSPKRLSSAKAWLK-------DG----LVLRRN------------------------SDEVLVLDR 65 (371)
Q Consensus 21 ~~~~~G~~v~l~C~~~~~~~~~~~~W~~-------~~----~~~~~~------------------------~~~~l~i~~ 65 (371)
+.+.+|++|+|.- ...-.+...+.|++ ++ .++..- .+++|.|-+
T Consensus 33 vt~r~G~nVTLga-~~~lhpgq~v~Wy~~~c~~~~G~G~~~~plC~Ytppk~~r~ktl~~t~~nt~i~y~C~NstL~i~~ 111 (258)
T PHA03240 33 HTTREGDPLLLGG-GHGLGAGQKAHWYKHKCDGITGNGDKLHPICTYDPPKNGKGKTLDESAENSFILYECHNSTLIIAH 111 (258)
T ss_pred cccccCCceeeCC-cccCCCCCEEEEEeeecccccCCCCCCceeEEecCCccccccccccccCCCceEEEeccceEEEEE
Confidence 5788999999977 43335667799998 21 111110 566788888
Q ss_pred CCcCCCeEEE
Q psy14542 66 VQREDAGMYQ 75 (371)
Q Consensus 66 ~~~~d~G~Y~ 75 (371)
+..+|+|+|.
T Consensus 112 vn~sd~~nYc 121 (258)
T PHA03240 112 LNLSDAGEYC 121 (258)
T ss_pred EeecCcchhh
Confidence 8888888873
No 409
>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []. The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.
Probab=86.14 E-value=7.9 Score=25.83 Aligned_cols=60 Identities=15% Similarity=0.283 Sum_probs=36.3
Q ss_pred eecCCeEEEEEEeecC-----CCCceEEEeCCcccccCCceEEecc--eEEEeccCCCCCeEEEEEE
Q psy14542 234 VKKDESVILPCSAQGN-----PLPTIKWYKQDSPVEESDRIQRIGS--SLSISHVEESDSGVWNCVA 293 (371)
Q Consensus 234 ~~~g~~~~l~C~~~~~-----p~~~v~W~~~~~~~~~~~~~~~~~~--~l~i~~~~~~d~G~Y~C~a 293 (371)
+..|+.++..|..... ....+.|..++..++.+......+. .+++.+......-.|-|..
T Consensus 15 v~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~~qy~~in~~~SsVT~~~~~~~~~~L~cC~l 81 (89)
T PF06328_consen 15 VSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPGSQYRVINDTVSSVTLPNLNPTGATLFCCKL 81 (89)
T ss_dssp EETTS-EEEEEEE-CCCHCT-STTCEEEECSSCESTCGCEEEESTTEEEEEESS--SSEEEEEEEEE
T ss_pred EeCCCCEEEEEEEECCCCCCcccceEEEEECCEECChhHcceeCCeEEEEEEccCCCCCceEEEEEE
Confidence 8899999999998632 3456999999986665544334443 4555555444444555553
No 410
>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ
Probab=86.14 E-value=3.1 Score=27.87 Aligned_cols=68 Identities=16% Similarity=0.332 Sum_probs=40.7
Q ss_pred EEEEEE-eecCCCCceEEEeCCcccccCCceE------EecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEE
Q psy14542 240 VILPCS-AQGNPLPTIKWYKQDSPVEESDRIQ------RIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQ 307 (371)
Q Consensus 240 ~~l~C~-~~~~p~~~v~W~~~~~~~~~~~~~~------~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 307 (371)
+.-.|. +.|.|+..|+|.-+-..-....... .-.+.+.+-.....|.-..+|++....-....++.|.
T Consensus 23 ~VA~CiSa~GrPpa~ItW~t~l~G~~etq~~~~~~GT~TV~S~y~lVPs~~~~gk~lTCvV~h~~~~~~~~~~L~ 97 (98)
T cd05890 23 LVATCVSANGKPPSVVRWDTRLKGEAEFQEIRNQNGTVTVISRYRLVPSREAHKQKLTCIVNYRNDRFTDSVTLN 97 (98)
T ss_pred EEEEEEcCCCcCCcEeEEEccCCCceeeeeeCCCCCCEEEEEEEEEeECHHHcCCEeEEEEEeccccccccEEec
Confidence 456788 5689999999984311000111111 1123455556677788899999988755555555554
No 411
>PHA03052 Hypothetical protein; Provisional
Probab=86.12 E-value=4.3 Score=25.04 Aligned_cols=31 Identities=10% Similarity=0.214 Sum_probs=24.5
Q ss_pred eecCCeEEEEEEeecC---CCCceEEEeCCcccc
Q psy14542 234 VKKDESVILPCSAQGN---PLPTIKWYKQDSPVE 264 (371)
Q Consensus 234 ~~~g~~~~l~C~~~~~---p~~~v~W~~~~~~~~ 264 (371)
+..|..++|.|.+.-. ..+.+.|..|+..+.
T Consensus 9 ~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~e 42 (69)
T PHA03052 9 TSLGSNLTITCKVSLRPPTTDADVFWISNGMYYE 42 (69)
T ss_pred EEccCCceEeEEEEecCCCcceEEEEEeCCcEEe
Confidence 8889999999998632 235699999998773
No 412
>PHA03189 UL14 tegument protein; Provisional
Probab=84.55 E-value=7.6 Score=32.15 Aligned_cols=20 Identities=30% Similarity=0.526 Sum_probs=15.5
Q ss_pred cCCCCCeEEEEEEEcCCCCc
Q psy14542 281 VEESDSGVWNCVANNSEGQD 300 (371)
Q Consensus 281 ~~~~d~G~Y~C~a~n~~g~~ 300 (371)
+..+-+|.|.|+..|.....
T Consensus 140 v~t~taG~Y~CvLrN~tHgl 159 (348)
T PHA03189 140 VSTSTAGMYECVLRNETHGL 159 (348)
T ss_pred EEecccceEEEEecccccee
Confidence 55667999999999976543
No 413
>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ
Probab=82.39 E-value=9.4 Score=25.64 Aligned_cols=64 Identities=14% Similarity=0.121 Sum_probs=39.6
Q ss_pred EEEEEEecCCCCCCeeEEEe--CCEEEeeC---------CeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEEEEE
Q psy14542 29 IELHCRVSPKRLSSAKAWLK--DGLVLRRN---------SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVI 92 (371)
Q Consensus 29 v~l~C~~~~~~~~~~~~W~~--~~~~~~~~---------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~ 92 (371)
+.-.|....+.|...|.|.- +|..-... -.+.+.+-.....|.-..+|++..........+.|.
T Consensus 23 ~VA~CiSa~GrPpa~ItW~t~l~G~~etq~~~~~~GT~TV~S~y~lVPs~~~~gk~lTCvV~h~~~~~~~~~~L~ 97 (98)
T cd05890 23 LVATCVSANGKPPSVVRWDTRLKGEAEFQEIRNQNGTVTVISRYRLVPSREAHKQKLTCIVNYRNDRFTDSVTLN 97 (98)
T ss_pred EEEEEEcCCCcCCcEeEEEccCCCceeeeeeCCCCCCEEEEEEEEEeECHHHcCCEeEEEEEeccccccccEEec
Confidence 56689768899999999975 33321111 223445555666666788999987644444444443
No 414
>PHA03189 UL14 tegument protein; Provisional
Probab=80.92 E-value=14 Score=30.79 Aligned_cols=26 Identities=31% Similarity=0.625 Sum_probs=17.6
Q ss_pred EEEEccCCcCCCeEEEEEEEcCCCCeE
Q psy14542 60 VLVLDRVQREDAGMYQCHVSADDDSAQ 86 (371)
Q Consensus 60 ~l~i~~~~~~d~G~Y~C~~~~~~~~~~ 86 (371)
+|.+ ++..+-+|.|.|+..|......
T Consensus 135 tLtF-~v~t~taG~Y~CvLrN~tHglv 160 (348)
T PHA03189 135 TLTF-RVSTSTAGMYECVLRNETHGLV 160 (348)
T ss_pred EEEE-EEEecccceEEEEeccccceee
Confidence 3443 3556679999999988655443
No 415
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=79.88 E-value=29 Score=31.27 Aligned_cols=38 Identities=24% Similarity=0.250 Sum_probs=0.0
Q ss_pred CeeEEEEccCCcCCCeEEEEEEEcCCCCe-EEEEEEEEe
Q psy14542 57 SDEVLVLDRVQREDAGMYQCHVSADDDSA-QMSAQVILG 94 (371)
Q Consensus 57 ~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~v~ 94 (371)
..+.|.|.+++.+|+|.|+-...+..+.. ...+.|.|.
T Consensus 87 ~~~~l~i~~a~~~~~GvY~l~~~~~~~~~~~~~~~v~v~ 125 (439)
T PF02480_consen 87 NKGGLSILNATEQDSGVYTLYVRNDSGWAHQSVVFVTVK 125 (439)
T ss_dssp ---------------------------------------
T ss_pred cCCceEEeccccccCeeEEEEecCCCCceEEEEEEEEEc
Confidence 55779999999999999999988665544 344666666
No 416
>PHA03282 envelope glycoprotein E; Provisional
Probab=79.55 E-value=11 Score=33.45 Aligned_cols=25 Identities=24% Similarity=0.432 Sum_probs=21.7
Q ss_pred CeeEEEEccCCcCCCeEEEEEEEcC
Q psy14542 57 SDEVLVLDRVQREDAGMYQCHVSAD 81 (371)
Q Consensus 57 ~~~~l~i~~~~~~d~G~Y~C~~~~~ 81 (371)
.+-.|.+.|+..+++|.|.|++..+
T Consensus 331 n~VdL~F~nAp~saSGLYVfVl~yN 355 (540)
T PHA03282 331 HTVNLQLRDASEASGGLYVCVVYVN 355 (540)
T ss_pred CccceEecCCCcccCceEEEEEEEC
Confidence 4448999999999999999999854
No 417
>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily. They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.
Probab=79.49 E-value=16 Score=24.49 Aligned_cols=74 Identities=22% Similarity=0.139 Sum_probs=44.2
Q ss_pred eecCCeEEEEEEeecCCCCceEEEeCCc--ccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEecC
Q psy14542 234 VKKDESVILPCSAQGNPLPTIKWYKQDS--PVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHG 311 (371)
Q Consensus 234 ~~~g~~~~l~C~~~~~p~~~v~W~~~~~--~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~ 311 (371)
+..|+++.+.|..+-..+..+.|.-.-. .+..+. .-..+.+.+++. | ..-.|.+.=...+...++.|.|..+
T Consensus 15 V~~G~Sv~VNCStsC~~p~~~GLET~L~k~~~~~g~----~W~~f~LsnV~~-d-s~~~C~~~C~g~Q~~~~~~ItVY~~ 88 (91)
T PF03921_consen 15 VPPGGSVWVNCSTSCPQPEKIGLETSLSKTELDSGP----QWKAFQLSNVTE-D-SSPLCFFNCSGEQSSASANITVYKP 88 (91)
T ss_dssp EETTEEEEEEEEESSSS-SEEEEESSSEEEEEEEET----TEEEEEEEEE-S-C-EEEEEEEEETTEEEEEEEEEEEEB-
T ss_pred ECCCCCEEEEEcCCCCCCCcceEEEecCCcccCCCC----cEEEEEEEcccc-C-CeEEEEEEcCCeEEEeEEeeEEeCC
Confidence 9999999999998633223456542110 111111 012577788875 4 6778998865555677888888877
Q ss_pred cc
Q psy14542 312 KY 313 (371)
Q Consensus 312 p~ 313 (371)
|.
T Consensus 89 Pe 90 (91)
T PF03921_consen 89 PE 90 (91)
T ss_dssp -S
T ss_pred CC
Confidence 75
No 418
>PHA03112 IL-18 binding protein; Provisional
Probab=79.41 E-value=10 Score=27.65 Aligned_cols=28 Identities=21% Similarity=0.297 Sum_probs=20.7
Q ss_pred EeccCcEEEEEEecCCCCC-CeeEEEeCC
Q psy14542 23 VDVGHRIELHCRVSPKRLS-SAKAWLKDG 50 (371)
Q Consensus 23 ~~~G~~v~l~C~~~~~~~~-~~~~W~~~~ 50 (371)
..+|+.+.|.|...+-.|. .-+.|..++
T Consensus 35 ~k~~~~vvL~C~gcs~fp~fS~lYWl~gn 63 (141)
T PHA03112 35 TKETEKVVLECRGCSYFPKFSYVYWLIGN 63 (141)
T ss_pred cCCCCEEEEEEECccCCCCceEEEEEcCC
Confidence 3568999999976655565 458999765
No 419
>PF11049 KSHV_K1: Glycoprotein K1 of Kaposi's sarcoma-associated herpes virus; InterPro: IPR021022 This is a highly glycosylated cytoplasmic and membrane protein similar to the immunoglobulin receptor family that is expressed as an inducible early-lytic-cycle gene product in primary effusion lymphoma cell-lines. This domain would appear to be the cytoplasmic region of the protein [].
Probab=79.24 E-value=4.7 Score=24.63 Aligned_cols=55 Identities=20% Similarity=0.257 Sum_probs=33.8
Q ss_pred EEEEEecCCCCCCeeEEEeCCEEEeeCCeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEEEEEEe
Q psy14542 30 ELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVILG 94 (371)
Q Consensus 30 ~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~ 94 (371)
+|+| .+ +...-+.||-||..+-.-...+|.+.+ -.++|+|+-..+ -..++-+.-+
T Consensus 2 tltC-~s--~~sLPiswYcN~TRLlRlt~~Tlt~~~----ltcNFtCV~qSG---h~hSiWItW~ 56 (71)
T PF11049_consen 2 TLTC-PS--NASLPISWYCNGTRLLRLTQQTLTVVT----LTCNFTCVGQSG---HRHSIWITWY 56 (71)
T ss_pred ceec-CC--CCCCcccEEECCceeeeecCCeEeeee----eeEEeeecCCCC---CCceEEEEEc
Confidence 5788 33 334458999999887654555666643 368888986532 2334444444
No 420
>PHA03286 envelope glycoprotein E; Provisional
Probab=77.52 E-value=52 Score=29.30 Aligned_cols=81 Identities=12% Similarity=0.062 Sum_probs=44.1
Q ss_pred ceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccc-------------eeeeeeeeeeeecCCeE
Q psy14542 174 GELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAA-------------KMFEKHRILNVKKDESV 240 (371)
Q Consensus 174 ~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~-------------~~~~~~~~~~~~~g~~~ 240 (371)
+.|.|.+++..+ +|.|+-...+. .+....++ ..+.|.......+|. +....-......+|+++
T Consensus 127 ~~L~I~nAt~qn-aGiYtly~rnd-~~~~~~~v--flVtV~~~~~~r~p~~~~pv~p~~~~~~f~l~ny~S~lF~~GDTF 202 (492)
T PHA03286 127 KELTILNASSQN-AGIYIRYSRNG-TRTAVMDV--LVVWVSGHGRARDPTMNIPITPPSTRVDLSLKNFKAFLYNVGDTV 202 (492)
T ss_pred CceEEeeccccc-cceEEEEEcCC-CCcEEEEE--EEEEEecCCCCCCCCcccCCCCcccceEEEEecccceEecCCCeE
Confidence 578888998888 99999888876 54443332 034443221111111 11111111125688888
Q ss_pred EEEEEee-c----CCCCceEEEe
Q psy14542 241 ILPCSAQ-G----NPLPTIKWYK 258 (371)
Q Consensus 241 ~l~C~~~-~----~p~~~v~W~~ 258 (371)
.+.-... . .-...+.|++
T Consensus 203 ~vSv~l~~~~~d~~Fsl~i~W~y 225 (492)
T PHA03286 203 DASVTAHLTNWAGAFSLEFRVLF 225 (492)
T ss_pred EEEEEEeecccCCCceEEEEEEE
Confidence 7776654 1 1124689976
No 421
>PHA02935 Hypothetical protein; Provisional
Probab=76.36 E-value=13 Score=28.55 Aligned_cols=78 Identities=15% Similarity=0.288 Sum_probs=45.9
Q ss_pred eEEEeCCEEEeeC------------------CeeEEEEccCCcCCCeEEEEEEEcCCCCe-EEEEEEEEecceeeEecCC
Q psy14542 44 KAWLKDGLVLRRN------------------SDEVLVLDRVQREDAGMYQCHVSADDDSA-QMSAQVILGGELVEIASSN 104 (371)
Q Consensus 44 ~~W~~~~~~~~~~------------------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~v~~~~~~~~~~~ 104 (371)
-.||.+++.+.-. .-.-|.|..++-+|+|.|.-+....+|-. ..+..+.|.... +....
T Consensus 69 tswyyndkvialatedrtsgyissfikrvnisltclnisslryedsgsykgvshlkdgvivtttmnisvkani--idltg 146 (349)
T PHA02935 69 TSWYYNDKVIALATEDRTSGYISSFIKRVNISLTCLNISSLRYEDSGSYKGVSHLKDGVIVTTTMNISVKANI--IDLTG 146 (349)
T ss_pred ceeeecCEEEEEeeccccccHHHHHHhhheeeEEEeeccceeeccCCcccCchhhcCceEEEEEEEEEEEeee--Eeccc
Confidence 6899998877644 22346788899999999987766555543 233444444211 11111
Q ss_pred ceee--ecCCcEEEEEEecCC
Q psy14542 105 QVVV--DVGHRIELHCRVSPK 123 (371)
Q Consensus 105 ~~~~--~~g~~v~l~C~~~~~ 123 (371)
.... ..-..+.++|.....
T Consensus 147 rvryltrnycevkirceiksf 167 (349)
T PHA02935 147 RVRYLTRNYCEVKIRCEIKSF 167 (349)
T ss_pred eeeeeccccEEEEEEEEEeee
Confidence 1111 334567888887544
No 422
>PHA03283 envelope glycoprotein E; Provisional
Probab=75.55 E-value=17 Score=32.84 Aligned_cols=94 Identities=12% Similarity=0.063 Sum_probs=55.8
Q ss_pred cceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEecCcccccc-cceEEEEeeeeccccccccccccccceeeeeecC
Q psy14542 273 GSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLS-SGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKD 351 (371)
Q Consensus 273 ~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 351 (371)
.+.|.|.++..+++|.|+=...+..+.....+.|.|..++..... +..+ . ...|.. .-..--+....++-...|
T Consensus 133 ~~~l~I~~at~~~aGVYtly~r~d~~~~~~vflvtVk~~~~~~~~~Pp~~--~-pv~P~~--h~a~f~v~nYhS~vf~~G 207 (542)
T PHA03283 133 RSVLQIQRATPNIAGVYTLHVSSDGMMKHSVFFVTVKKPPKQPQTPPAPL--V-PQVPAR--HHTDFHVRGYHSRVYSPG 207 (542)
T ss_pred CCeeEEEecccccCeEEEEEecCCCceEEEEEEEEecCCCcCCCCCCCCc--c-ccCCcc--CCceEEEecceeEEecCC
Confidence 467999999999999999999988776667777888764331100 0000 0 000000 000011334455667899
Q ss_pred CeEEEeeeeecCC--C---CccccC
Q psy14542 352 ESVILPCSAQGNP--L---PTIKYR 371 (371)
Q Consensus 352 ~~~~l~C~~~g~p--~---p~i~W~ 371 (371)
+++.+.-...... + .+|.|+
T Consensus 208 Dtf~lsi~l~s~~~d~~fs~~i~Wy 232 (542)
T PHA03283 208 DSFDLSVHLESDIGDPSFSATIDWY 232 (542)
T ss_pred CceeEeEEEeeccCCCCceEEEEEE
Confidence 9999977766432 1 368885
No 423
>PHA03283 envelope glycoprotein E; Provisional
Probab=70.09 E-value=40 Score=30.62 Aligned_cols=79 Identities=20% Similarity=0.265 Sum_probs=51.0
Q ss_pred CeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEEEEEEeccee------e-------------EecCC-ceee-ecCCcEE
Q psy14542 57 SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGELV------E-------------IASSN-QVVV-DVGHRIE 115 (371)
Q Consensus 57 ~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~------~-------------~~~~~-~~~~-~~g~~v~ 115 (371)
....|.|.+++.+++|.|+=...++.+.....+.|.|..... . +.... ...+ .+|+++.
T Consensus 132 ~~~~l~I~~at~~~aGVYtly~r~d~~~~~~vflvtVk~~~~~~~~~Pp~~~pv~P~~h~a~f~v~nYhS~vf~~GDtf~ 211 (542)
T PHA03283 132 ERSVLQIQRATPNIAGVYTLHVSSDGMMKHSVFFVTVKKPPKQPQTPPAPLVPQVPARHHTDFHVRGYHSRVYSPGDSFD 211 (542)
T ss_pred CCCeeEEEecccccCeEEEEEecCCCceEEEEEEEEecCCCcCCCCCCCCccccCCccCCceEEEecceeEEecCCCcee
Confidence 556799999999999999999988777556667778774111 1 00111 1122 6899888
Q ss_pred EEEEecCC----CCCceEEEeeCC
Q psy14542 116 LHCRVSPK----RLSSAKAWLKDG 135 (371)
Q Consensus 116 l~C~~~~~----~~~~~v~W~~~~ 135 (371)
+.-..... +-...+.|+.-.
T Consensus 212 lsi~l~s~~~d~~fs~~i~Wyy~p 235 (542)
T PHA03283 212 LSVHLESDIGDPSFSATIDWYYMN 235 (542)
T ss_pred EeEEEeeccCCCCceEEEEEEEec
Confidence 75554321 223689998743
No 424
>KOG1026|consensus
Probab=69.86 E-value=14 Score=35.44 Aligned_cols=157 Identities=17% Similarity=0.260 Sum_probs=84.7
Q ss_pred eeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCc
Q psy14542 107 VVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDR 186 (371)
Q Consensus 107 ~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~ 186 (371)
.+..|..+++.|...+.+. +...|+.++......... ..+..+....
T Consensus 203 ~v~~~~~~~~~c~~~~~~v-p~~~~~~~~~~~~~~~~~-----------------------~~~c~~~~~~--------- 249 (774)
T KOG1026|consen 203 TVEEGSSITLKCSQAGIPV-PCHYWFPNCLASSNTNQT-----------------------SSLCRSECEV--------- 249 (774)
T ss_pred hhcccchheeeeecccCCC-cceeeecccccccCCCcc-----------------------ccccccccee---------
Confidence 3467899999999999888 888998877655443210 0000001111
Q ss_pred cceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEe---ecCCCCceEEEeCCccc
Q psy14542 187 YRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSA---QGNPLPTIKWYKQDSPV 263 (371)
Q Consensus 187 ~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~---~~~p~~~v~W~~~~~~~ 263 (371)
.-.+.|.+.+. .+....++ .+.+. .++........ . ++ .-.|.. .+.|.+...|..++..+
T Consensus 250 ~~~~~c~~E~~-~~~~~~~v---~~~~~-----~p~~~~~~~~~---~--~~--~~~C~~~~~~~~~~~~~~~~~~~~~~ 313 (774)
T KOG1026|consen 250 LENDLCIAENA-VARSNPSI---LLVVD-----LPKAEVLLCSP---L--SD--HHNCIPIGITANPGPALHWCYNGSGL 313 (774)
T ss_pred eechhhHHHHh-hhhcCcee---eeEEe-----cccccccCCCC---c--cc--cCceeeeeccCCCCCceeeeecCccc
Confidence 11267888877 55544443 44444 12111111100 0 00 222432 25667788998887764
Q ss_pred ccCCceE--Eec--ceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEecCc
Q psy14542 264 EESDRIQ--RIG--SSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGK 312 (371)
Q Consensus 264 ~~~~~~~--~~~--~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p 312 (371)
...+... ..+ .-+....-...+.|+|+|.+.+..|.........+...|
T Consensus 314 ~~~g~~~~t~s~~~~C~~~~~~~h~~~~~~~~~~e~~~g~~~~r~~g~~~~~P 366 (774)
T KOG1026|consen 314 NYRGTVCVTKSGKEQCLPWNDPPHSHNGNYTLFPELPGGKNYCRNPGGFMSRP 366 (774)
T ss_pred eEecccccccccCcCCcccCcCcccccCcceeeecccCccccccCcCccccCC
Confidence 4332211 111 222222334567899999999998887666555555555
No 425
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=69.56 E-value=30 Score=22.94 Aligned_cols=54 Identities=15% Similarity=0.214 Sum_probs=35.6
Q ss_pred cCcEEEEEEecCCCCCCeeEEEeCCEEEeeC-CeeEEEEccCCcCCCeEEEEEEEcCCCCeE
Q psy14542 26 GHRIELHCRVSPKRLSSAKAWLKDGLVLRRN-SDEVLVLDRVQREDAGMYQCHVSADDDSAQ 86 (371)
Q Consensus 26 G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~-~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~ 86 (371)
...+.|.+ ..+ ...+.||.||..+... ....+.+. ....|.|+-.+....|...
T Consensus 31 ~~~l~l~a--~~~--~~~~~W~vdg~~~g~~~~~~~~~~~---~~~~G~h~l~vvD~~G~~~ 85 (89)
T PF06832_consen 31 RQPLVLKA--AGG--RGPVYWFVDGEPLGTTQPGHQLFWQ---PDRPGEHTLTVVDAQGRSA 85 (89)
T ss_pred cceEEEEE--eCC--CCcEEEEECCEEcccCCCCCeEEeC---CCCCeeEEEEEEcCCCCEE
Confidence 34555655 333 2389999999999443 34455544 3568999999987766543
No 426
>PF02010 REJ: REJ domain; InterPro: IPR002859 The REJ (Receptor for Egg Jelly) domain is found in PKD1 P98161 from SWISSPROT and the sperm receptor for egg jelly Q26627 from SWISSPROT. The exact function of this domain is unknown. The domain is 600 amino acids long so is probably composed of multiple structural domains. There are six completely conserved cysteine residues that may form disulphide bridges. This region contains tandem PKD-like domains. Sequence similarity between a region of the autosomal dominant polycystic kidney disease (ADPKD) protein, polycystin-1 and a sea urchin sperm glycoprotein involved in fertilization, the receptor for egg jelly (suREJ) has been known for some time. The suREJ protein binds the glycoprotein coat of the egg (egg jelly), triggering the acrosome reaction, which transforms the sperm into a fusogenic cell. The sequence similarity and expression pattern suggests that the predicted human PKDREJ protein is a mammalian equivalent of the suREJ protein and therefore may have a central role in human fertilization [].; PDB: 2E7M_A 2YRL_A.
Probab=69.41 E-value=9.9 Score=34.35 Aligned_cols=80 Identities=15% Similarity=0.160 Sum_probs=0.0
Q ss_pred eecCCeEEEEEEeecC----CCCceEEEe--------CCccccc--CCce-EEecceEEEeccCCCCCeEEEEEE--EcC
Q psy14542 234 VKKDESVILPCSAQGN----PLPTIKWYK--------QDSPVEE--SDRI-QRIGSSLSISHVEESDSGVWNCVA--NNS 296 (371)
Q Consensus 234 ~~~g~~~~l~C~~~~~----p~~~v~W~~--------~~~~~~~--~~~~-~~~~~~l~i~~~~~~d~G~Y~C~a--~n~ 296 (371)
+..++.+.|...+.+. ....+.|.. ....+.. .... ......|.|..-.....+.|..++ ...
T Consensus 205 vn~~~~l~L~~~~~~~~~~~~~~~y~Wsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lvi~~~~l~~g~~Y~~~l~v~~~ 284 (440)
T PF02010_consen 205 VNPSERLVLQASCSSCDSDSSNVSYSWSLFSLDGVSDSNSELPDWSSMTTTGSSSSNLVIDPGVLEPGSTYTFRLTVTDS 284 (440)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCCCCCEEEEEEEeCCCCcCCCEEEEEEEeeccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 6667777766554432 235689986 1111110 0011 123345777665555666777654 444
Q ss_pred CCCc-eeEEEEEEecCcc
Q psy14542 297 EGQD-KMQLFIQYAHGKY 313 (371)
Q Consensus 297 ~g~~-~~~~~l~v~~~p~ 313 (371)
.+.. ..++.+.+..+|.
T Consensus 285 ~~~~~~a~~~~~~n~pP~ 302 (440)
T PF02010_consen 285 SGSSGSASISFTVNAPPS 302 (440)
T ss_dssp ------------------
T ss_pred cccccccccccccccccc
Confidence 3332 5667777777776
No 427
>PHA03112 IL-18 binding protein; Provisional
Probab=68.62 E-value=44 Score=24.49 Aligned_cols=27 Identities=26% Similarity=0.554 Sum_probs=20.6
Q ss_pred eecCCeEEEEEEeecC-CC-CceEEEeCC
Q psy14542 234 VKKDESVILPCSAQGN-PL-PTIKWYKQD 260 (371)
Q Consensus 234 ~~~g~~~~l~C~~~~~-p~-~~v~W~~~~ 260 (371)
...++.+.|+|.+-++ |. .-+.|..++
T Consensus 35 ~k~~~~vvL~C~gcs~fp~fS~lYWl~gn 63 (141)
T PHA03112 35 TKETEKVVLECRGCSYFPKFSYVYWLIGN 63 (141)
T ss_pred cCCCCEEEEEEECccCCCCceEEEEEcCC
Confidence 5668899999998865 54 348999665
No 428
>PHA03286 envelope glycoprotein E; Provisional
Probab=65.30 E-value=42 Score=29.86 Aligned_cols=89 Identities=11% Similarity=0.047 Sum_probs=54.6
Q ss_pred cceEEEeccCCCCCeEEEEEEEcCCCCc-eeEEEEEEecC----cccccccceEEEEeeeeccccccccccccccceeee
Q psy14542 273 GSSLSISHVEESDSGVWNCVANNSEGQD-KMQLFIQYAHG----KYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILN 347 (371)
Q Consensus 273 ~~~l~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~v~~~----p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (371)
.+.|.|.++..+++|.|+=...|..|.. ...+.|.|... ++.+.. ...|. ......-+..+.++-
T Consensus 126 ~~~L~I~nAt~qnaGiYtly~rnd~~~~~~~vflVtV~~~~~~r~p~~~~--------pv~p~--~~~~~f~l~ny~S~l 195 (492)
T PHA03286 126 GKELTILNASSQNAGIYIRYSRNGTRTAVMDVLVVWVSGHGRARDPTMNI--------PITPP--STRVDLSLKNFKAFL 195 (492)
T ss_pred CCceEEeeccccccceEEEEEcCCCCcEEEEEEEEEEecCCCCCCCCccc--------CCCCc--ccceEEEEecccceE
Confidence 3579999999999999999999887764 44455666422 221110 01111 111122355566777
Q ss_pred eecCCeEEEeeeeec-C----CCCccccC
Q psy14542 348 VKKDESVILPCSAQG-N----PLPTIKYR 371 (371)
Q Consensus 348 ~~~g~~~~l~C~~~g-~----p~p~i~W~ 371 (371)
...|+++.+.-.... . ...+|.|+
T Consensus 196 F~~GDTF~vSv~l~~~~~d~~Fsl~i~W~ 224 (492)
T PHA03286 196 YNVGDTVDASVTAHLTNWAGAFSLEFRVL 224 (492)
T ss_pred ecCCCeEEEEEEEeecccCCCceEEEEEE
Confidence 889999988877662 1 12367785
No 429
>PF11141 DUF2914: Protein of unknown function (DUF2914); InterPro: IPR022606 This bacterial family of proteins has no known function.
Probab=64.62 E-value=32 Score=21.42 Aligned_cols=52 Identities=15% Similarity=0.221 Sum_probs=33.5
Q ss_pred CeeEEEeCCEEEeeC-------CeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEEEEEE
Q psy14542 42 SAKAWLKDGLVLRRN-------SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVIL 93 (371)
Q Consensus 42 ~~~~W~~~~~~~~~~-------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 93 (371)
....|+++++.+... .-.+..-+.......|.+++.+....|..-..+.+.|
T Consensus 7 v~H~W~~~g~~~~~i~l~i~g~r~Rt~S~k~~~~~~~G~WrV~V~~~~G~~l~~~~F~V 65 (66)
T PF11141_consen 7 VYHRWYKNGKLVARIPLPISGGRWRTWSSKQNFPDQPGDWRVEVVDEDGQVLGSLRFSV 65 (66)
T ss_pred EEEEEEECCEEEEEEEEeccCCCEEEEEEeecCCCCCcCEEEEEEcCCCCEEEEEEEEE
Confidence 347899999877643 1123333444557889999999887777655544443
No 430
>PF01688 Herpes_gI: Alphaherpesvirus glycoprotein I; InterPro: IPR002874 This family consists of glycoprotein I from various members of the alphaherpesvirinae. These include Human herpesvirus 1 (HHV-1), Human herpesvirus 3 (HHV-3) and Suid herpesvirus 1 (Pseudorabies virus). Glycoprotein I (gI) is important during natural infection, mutants lacking gI produce smaller lesions at the site of infection and show reduced neuronal spread []. gI forms a heterodimeric complex with gE; this complex displays Fc receptor activity (binds to the Fc region of immunoglobulin) []. Glycoproteins are also important in the production of virus-neutralizing antibodies and cell mediated immunity []. The alphaherpesviridae have a dsDNA genome and have no RNA stage during viral replication.; GO: 0033643 host cell part
Probab=60.29 E-value=24 Score=26.53 Aligned_cols=29 Identities=24% Similarity=0.370 Sum_probs=23.7
Q ss_pred CeeEEEEccCCcCCCeEEEEEEEcCCCCe
Q psy14542 57 SDEVLVLDRVQREDAGMYQCHVSADDDSA 85 (371)
Q Consensus 57 ~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~ 85 (371)
....|.|.+.+.+|+|.|.-+++-+....
T Consensus 122 ~~~lL~i~~p~~~dsG~Y~lRV~l~~~~~ 150 (161)
T PF01688_consen 122 NGVLLRIRNPRPEDSGIYYLRVWLDGANK 150 (161)
T ss_pred cceEEEeCCCCcccceEEEEEEEECCCCC
Confidence 45569999999999999999998655433
No 431
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=60.20 E-value=47 Score=21.97 Aligned_cols=56 Identities=16% Similarity=0.303 Sum_probs=36.6
Q ss_pred eEEEEEEeecCCCCceEEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCCCcee
Q psy14542 239 SVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKM 302 (371)
Q Consensus 239 ~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~ 302 (371)
...|.+.+.+. ...+.|+.||..+..... ...+.+. ....|.|+-.+....|....
T Consensus 31 ~~~l~l~a~~~-~~~~~W~vdg~~~g~~~~----~~~~~~~---~~~~G~h~l~vvD~~G~~~~ 86 (89)
T PF06832_consen 31 RQPLVLKAAGG-RGPVYWFVDGEPLGTTQP----GHQLFWQ---PDRPGEHTLTVVDAQGRSAS 86 (89)
T ss_pred cceEEEEEeCC-CCcEEEEECCEEcccCCC----CCeEEeC---CCCCeeEEEEEEcCCCCEEE
Confidence 45555666655 449999999998843321 2234433 34579999999888887543
No 432
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=57.37 E-value=5.2 Score=35.88 Aligned_cols=91 Identities=16% Similarity=0.142 Sum_probs=16.6
Q ss_pred ecceEEEeccCCCCCeEEEEEEEcCCCCc-eeEEEEEEecCcccccccceEEEEeeeecc---cc-ccccccccccceee
Q psy14542 272 IGSSLSISHVEESDSGVWNCVANNSEGQD-KMQLFIQYAHGKYHMLSSGELIIHQVDEKN---KR-LLSAAKMFEKHRIL 346 (371)
Q Consensus 272 ~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~ 346 (371)
..+.|.|.+++.+|+|.|+=...+..+.. ...+.|.|..+...+ . ...|. .+ ..-.-..+..+.++
T Consensus 87 ~~~~l~i~~a~~~~~GvY~l~~~~~~~~~~~~~~~v~v~~~~~~~--------~-~p~p~~p~~p~~~~~~~~~~~~~s~ 157 (439)
T PF02480_consen 87 NKGGLSILNATEQDSGVYTLYVRNDSGWAHQSVVFVTVKGPAPDP--------R-TPPPHHPIVPHRHGATFHLKNYHSH 157 (439)
T ss_dssp --------------------------------------------------------------------SEEEEEE--SEE
T ss_pred cCCceEEeccccccCeeEEEEecCCCCceEEEEEEEEEcCCCcCC--------C-CCCCCCCCCCcccccEEEEeccceE
Confidence 34679999999999999999988776654 444666666543310 0 01111 00 00112335667777
Q ss_pred eeecCCeEEEeeeeecCCC------CccccC
Q psy14542 347 NVKKDESVILPCSAQGNPL------PTIKYR 371 (371)
Q Consensus 347 ~~~~g~~~~l~C~~~g~p~------p~i~W~ 371 (371)
-...|+++.+.-.++.... .+|.||
T Consensus 158 vf~~Gdtf~~~v~l~~~~~d~~~f~~~i~W~ 188 (439)
T PF02480_consen 158 VFSPGDTFHLSVHLQSEAHDDPPFSLEIDWY 188 (439)
T ss_dssp E--TT--EE---EEEEEESSS--EEEEEEEE
T ss_pred EecCCCcEEEeEEEEeccCCCCCeeEEEEEE
Confidence 8899999999888764322 267775
No 433
>PF02440 Adeno_E3_CR1: Adenovirus E3 region protein CR1; InterPro: IPR003471 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D virus) 49 Kd protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=57.24 E-value=22 Score=21.91 Aligned_cols=21 Identities=29% Similarity=0.490 Sum_probs=14.4
Q ss_pred EeccCcEEEEEEecCCCCCCeeEEEe
Q psy14542 23 VDVGHRIELHCRVSPKRLSSAKAWLK 48 (371)
Q Consensus 23 ~~~G~~v~l~C~~~~~~~~~~~~W~~ 48 (371)
+..|++++|.= .+...+.|++
T Consensus 2 v~~G~N~TL~G-----p~~~~V~Wy~ 22 (63)
T PF02440_consen 2 VTVGSNVTLVG-----PPDGPVTWYK 22 (63)
T ss_pred EeEcCcEEEeC-----CCCCceEEEE
Confidence 56788888743 3455689984
No 434
>PHA03240 envelope glycoprotein M; Provisional
Probab=55.88 E-value=63 Score=25.44 Aligned_cols=21 Identities=29% Similarity=0.389 Sum_probs=17.3
Q ss_pred ccceEEEEEeecCCccceeEEE
Q psy14542 172 SSGELIIHQVDESDRYRSYQCR 193 (371)
Q Consensus 172 ~~~~l~i~~~~~~d~~g~y~C~ 193 (371)
.+++|.|.++..+| .|.|.-.
T Consensus 103 ~NstL~i~~vn~sd-~~nYcr~ 123 (258)
T PHA03240 103 HNSTLIIAHLNLSD-AGEYCRK 123 (258)
T ss_pred ccceEEEEEEeecC-cchhhhc
Confidence 45789999999999 9998543
No 435
>PHA03281 envelope glycoprotein E; Provisional
Probab=48.59 E-value=1.1e+02 Score=28.13 Aligned_cols=90 Identities=12% Similarity=0.121 Sum_probs=52.8
Q ss_pred cceEEEeccCCCCCeEEEEEEEcCCCCcee-EEEEEEecCcc-cccccceEEEEeeeeccccccccccccccceeeeeec
Q psy14542 273 GSSLSISHVEESDSGVWNCVANNSEGQDKM-QLFIQYAHGKY-HMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKK 350 (371)
Q Consensus 273 ~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~-~~~l~v~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (371)
.+.|.|.++..+++|.|+-......|.... .+.|.|...++ .+..+. ..|.. .-..-.+....++-...
T Consensus 297 ~~vL~I~nAT~~naGVYtly~rg~~G~s~~svfLVtVkg~~~~rip~p~-------Vtpk~--hga~F~vknYhShVF~p 367 (642)
T PHA03281 297 PGVLKFEHMEAHHAGVYIWNLQGSDGENMYATFLVKLKGDEENHIDLPA-------VTPKP--KGAEFHMWHYHSHVFSV 367 (642)
T ss_pred CCeeEEEecccccceeEEEEecCCCCcceeEEEEEEecCCcccCCCCCC-------ccccc--cCceEEEeccceeEecC
Confidence 467999999999999999888766665444 66777765442 000000 00000 00001123344556789
Q ss_pred CCeEEEeeeeecC--CC---CccccC
Q psy14542 351 DESVILPCSAQGN--PL---PTIKYR 371 (371)
Q Consensus 351 g~~~~l~C~~~g~--p~---p~i~W~ 371 (371)
|+++.+.-..... .. .+|.|+
T Consensus 368 GDTFsl~v~L~s~ihD~pFsleI~Wy 393 (642)
T PHA03281 368 GDTFSLAMHLQYKIHDAPFDLLLEWL 393 (642)
T ss_pred CCeeEEEEEEeeeccCCCceeEEEEE
Confidence 9999888776643 22 368885
No 436
>PHA03281 envelope glycoprotein E; Provisional
Probab=46.57 E-value=2e+02 Score=26.61 Aligned_cols=79 Identities=19% Similarity=0.287 Sum_probs=47.8
Q ss_pred CeeEEEEccCCcCCCeEEEEEEEcCCCCe-EEEEEEEEecce------eeEecCC----------ceee-ecCCcEEEEE
Q psy14542 57 SDEVLVLDRVQREDAGMYQCHVSADDDSA-QMSAQVILGGEL------VEIASSN----------QVVV-DVGHRIELHC 118 (371)
Q Consensus 57 ~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~v~~~~------~~~~~~~----------~~~~-~~g~~v~l~C 118 (371)
..+.|.|.+++..++|.|+-..+...|.. ...+-|.|.... |.+...+ ...+ .+|+++.+.-
T Consensus 296 ~~~vL~I~nAT~~naGVYtly~rg~~G~s~~svfLVtVkg~~~~rip~p~Vtpk~hga~F~vknYhShVF~pGDTFsl~v 375 (642)
T PHA03281 296 EPGVLKFEHMEAHHAGVYIWNLQGSDGENMYATFLVKLKGDEENHIDLPAVTPKPKGAEFHMWHYHSHVFSVGDTFSLAM 375 (642)
T ss_pred cCCeeEEEecccccceeEEEEecCCCCcceeEEEEEEecCCcccCCCCCCccccccCceEEEeccceeEecCCCeeEEEE
Confidence 45679999999999999998887555543 346667776311 1111111 1122 5788877766
Q ss_pred EecC----CCCCceEEEeeCC
Q psy14542 119 RVSP----KRLSSAKAWLKDG 135 (371)
Q Consensus 119 ~~~~----~~~~~~v~W~~~~ 135 (371)
.... .+-...+.|+.-.
T Consensus 376 ~L~s~ihD~pFsleI~Wyy~p 396 (642)
T PHA03281 376 HLQYKIHDAPFDLLLEWLYVP 396 (642)
T ss_pred EEeeeccCCCceeEEEEEEec
Confidence 5532 2223678888643
No 437
>PHA03282 envelope glycoprotein E; Provisional
Probab=45.15 E-value=60 Score=29.11 Aligned_cols=44 Identities=16% Similarity=0.361 Sum_probs=30.5
Q ss_pred CceEEecceEEEeccCCCCCeEEEEEEEcCCCC--ceeEEEEEEec
Q psy14542 267 DRIQRIGSSLSISHVEESDSGVWNCVANNSEGQ--DKMQLFIQYAH 310 (371)
Q Consensus 267 ~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~--~~~~~~l~v~~ 310 (371)
.++...+++|.|.+++.+|+|.|+-.+...... ....+.|.|..
T Consensus 117 ~rvs~~n~tl~l~~a~~~DsG~Y~L~~~~~~~~~~~~~~v~l~V~p 162 (540)
T PHA03282 117 PRVAVVNGTLVLREARETDSGMYVLSVSRAPNSTAARAVVFLVVGP 162 (540)
T ss_pred cceeEecceEEEeeccccCCceEEEEecCCCCchhheEEEEEEecC
Confidence 445556788999999999999999886433222 34445666653
No 438
>KOG1026|consensus
Probab=44.47 E-value=16 Score=35.06 Aligned_cols=74 Identities=19% Similarity=0.316 Sum_probs=50.6
Q ss_pred eecCCeEEEEEEeecCCCCceEEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEecCcc
Q psy14542 234 VKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKY 313 (371)
Q Consensus 234 ~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~ 313 (371)
+..+..+++.|...+.|.+...|+.++............-...... .-+++|.++|..|.....+.+.+..++.
T Consensus 204 v~~~~~~~~~c~~~~~~vp~~~~~~~~~~~~~~~~~~~~c~~~~~~------~~~~~c~~E~~~~~~~~~v~~~~~~p~~ 277 (774)
T KOG1026|consen 204 VEEGSSITLKCSQAGIPVPCHYWFPNCLASSNTNQTSSLCRSECEV------LENDLCIAENAVARSNPSILLVVDLPKA 277 (774)
T ss_pred hcccchheeeeecccCCCcceeeecccccccCCCccccccccccee------eechhhHHHHhhhhcCceeeeEEecccc
Confidence 7888999999999999999999998766544332111000011111 1128999999999988888887776644
No 439
>PF03174 CHB_HEX_C: Chitobiase/beta-hexosaminidase C-terminal domain; InterPro: IPR004867 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This short domain is found in members of the glycoside hydrolase family 20 (GH20 from CAZY) and represents the C-terminal domain in chitobiases and beta-hexosaminidases 3.2.1.52 from EC. It is composed of a beta sandwich structure []. The function of this domain is unknown. ; GO: 0004563 beta-N-acetylhexosaminidase activity, 0005975 carbohydrate metabolic process; PDB: 1C7T_A 1QBA_A 1QBB_A 1C7S_A.
Probab=44.29 E-value=47 Score=21.14 Aligned_cols=64 Identities=14% Similarity=0.175 Sum_probs=28.9
Q ss_pred eCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeCCeeEEEEccCCcCCCeEEEEEEEcCCCCeE
Q psy14542 16 SPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHVSADDDSAQ 86 (371)
Q Consensus 16 ~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~ 86 (371)
.|.. -....+..|+|.| . .+...+.+.-||..-. ..+.+.-..+...+.+.+++.+....+..+
T Consensus 6 sp~~-G~~~~~~~v~l~~-~---~~~~~I~YT~DGs~Pt--~~s~~Y~~Pi~i~~~~~vka~a~~~~g~~s 69 (75)
T PF03174_consen 6 SPPS-GTYDEGQTVTLSS-D---TPGATIYYTLDGSEPT--KSSPLYTGPITIPESGTVKARAFDNGGNVS 69 (75)
T ss_dssp -----EEEEETTEEEEE--S---STTSEEEEESSSSSS------EE--CCC--B--S--EEEEE-TTS-B-
T ss_pred eCCC-CcEecCeEEEEEe-C---CCCCEEEEEcCCCccc--ccCcccCcCEEeCCCcEEEEEEEcCCCCcC
Confidence 3444 4566688899999 2 2345677766655322 233455566777778888888887665443
No 440
>COG5475 Uncharacterized small protein [Function unknown]
Probab=43.66 E-value=52 Score=19.46 Aligned_cols=27 Identities=15% Similarity=0.369 Sum_probs=18.2
Q ss_pred eEEEeccCCCCCeEEEEEEEcCCCCceeE
Q psy14542 275 SLSISHVEESDSGVWNCVANNSEGQDKMQ 303 (371)
Q Consensus 275 ~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~ 303 (371)
.+++..... .|.|.|+..+..|....-
T Consensus 19 ~Mtvs~~ss--~Gmy~C~Wf~g~g~~~~~ 45 (60)
T COG5475 19 RMTVSGYSS--DGMYECRWFDGYGVKREA 45 (60)
T ss_pred eEEEecccc--CCeEEEEEecCCCccccc
Confidence 355554443 399999999998865433
No 441
>KOG0200|consensus
Probab=40.10 E-value=3.4e+02 Score=25.99 Aligned_cols=24 Identities=38% Similarity=0.652 Sum_probs=20.8
Q ss_pred CeeEEEEccCCcCCCeEEEEEEEc
Q psy14542 57 SDEVLVLDRVQREDAGMYQCHVSA 80 (371)
Q Consensus 57 ~~~~l~i~~~~~~d~G~Y~C~~~~ 80 (371)
....+.+..+...|.|.|+|.+.+
T Consensus 11 ~~~~~~~~~~~~~~~~~y~~~~~~ 34 (609)
T KOG0200|consen 11 NHWFLIIDSVVPGDKGFYTCLVSN 34 (609)
T ss_pred ccceEEEEEEEecCCccEEEEEec
Confidence 455788888999999999999988
No 442
>PF01688 Herpes_gI: Alphaherpesvirus glycoprotein I; InterPro: IPR002874 This family consists of glycoprotein I from various members of the alphaherpesvirinae. These include Human herpesvirus 1 (HHV-1), Human herpesvirus 3 (HHV-3) and Suid herpesvirus 1 (Pseudorabies virus). Glycoprotein I (gI) is important during natural infection, mutants lacking gI produce smaller lesions at the site of infection and show reduced neuronal spread []. gI forms a heterodimeric complex with gE; this complex displays Fc receptor activity (binds to the Fc region of immunoglobulin) []. Glycoproteins are also important in the production of virus-neutralizing antibodies and cell mediated immunity []. The alphaherpesviridae have a dsDNA genome and have no RNA stage during viral replication.; GO: 0033643 host cell part
Probab=37.63 E-value=86 Score=23.72 Aligned_cols=34 Identities=15% Similarity=0.115 Sum_probs=26.6
Q ss_pred eEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEE
Q psy14542 275 SLSISHVEESDSGVWNCVANNSEGQDKMQLFIQY 308 (371)
Q Consensus 275 ~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 308 (371)
-|.|.+.+.+|+|.|.-++.-.......-+.+.+
T Consensus 125 lL~i~~p~~~dsG~Y~lRV~l~~~~~~d~F~~~v 158 (161)
T PF01688_consen 125 LLRIRNPRPEDSGIYYLRVWLDGANKADVFRLSV 158 (161)
T ss_pred EEEeCCCCcccceEEEEEEEECCCCCCcEEEEee
Confidence 4899999999999999999877666555555443
No 443
>smart00635 BID_2 Bacterial Ig-like domain 2.
Probab=37.21 E-value=1.2e+02 Score=19.66 Aligned_cols=42 Identities=19% Similarity=0.430 Sum_probs=31.2
Q ss_pred eEEEeCCCcEEEeccCcEEEEEEecCCCC--CCeeEEEeCCEEEe
Q psy14542 12 SIEMSPSGQVVVDVGHRIELHCRVSPKRL--SSAKAWLKDGLVLR 54 (371)
Q Consensus 12 ~~~~~p~~~~~~~~G~~v~l~C~~~~~~~--~~~~~W~~~~~~~~ 54 (371)
.+.+.|.. ..+..|+...|...+..+.. ...+.|.-.+..+.
T Consensus 4 ~i~i~p~~-~~l~~G~~~~l~a~~~~~~~~~~~~v~w~Ssn~~va 47 (81)
T smart00635 4 SVTVTPTT-ASVKKGLTLQLTATVTPSSAKVTGKVTWTSSNPSVA 47 (81)
T ss_pred EEEEeCCe-eEEeCCCeEEEEEEEECCCCCccceEEEEECCCcEE
Confidence 57788887 88999999999996554332 45689988766554
No 444
>KOG0200|consensus
Probab=35.70 E-value=3.5e+02 Score=25.96 Aligned_cols=111 Identities=22% Similarity=0.169 Sum_probs=57.9
Q ss_pred ceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceee-eeeeeeeeecCCeEEEEEEeecCCCC
Q psy14542 174 GELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMF-EKHRILNVKKDESVILPCSAQGNPLP 252 (371)
Q Consensus 174 ~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~-~~~~~~~~~~g~~~~l~C~~~~~p~~ 252 (371)
..+.+..+...+ .|.|+|.+.+. .... .+. .. ....+.+.. .+.... ...+....+ +...+.+
T Consensus 13 ~~~~~~~~~~~~-~~~y~~~~~~~---~~~~-----~~~--~~-~~~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~ 76 (609)
T KOG0200|consen 13 WFLIIDSVVPGD-KGFYTCLVSNI---NLII-----SLD--DI-VIHRPILLAGENANPN-TVVTVGVPL---AFSIPQP 76 (609)
T ss_pred ceEEEEEEEecC-CccEEEEEecC---ceee-----Eee--cc-cCcccccccCCCCCcc-eeeccccee---eeecCCC
Confidence 567888888899 99999999872 1111 111 00 001111111 112221 344444444 3333366
Q ss_pred ceEEEeCCccc----ccCC-c--------------eEEecceEEEeccCCCCCeEEEEEEEcCCCCc
Q psy14542 253 TIKWYKQDSPV----EESD-R--------------IQRIGSSLSISHVEESDSGVWNCVANNSEGQD 300 (371)
Q Consensus 253 ~v~W~~~~~~~----~~~~-~--------------~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~ 300 (371)
.+.|....... .... . .......+.+.++...+.|.|.|...+..+..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~ 143 (609)
T KOG0200|consen 77 FIKWGTNLEIECEDGLFEYKTKKTLSFVEIEYNRLVDGTFESGLIYNVSLTEAGEYLCWTGRTVGDG 143 (609)
T ss_pred cceeeeeecccccccCcchhheeeeeeeeccccccccCceEeeeeeccChhhcceeeccCCCccccc
Confidence 77777644211 0000 0 00122357888999999999999987644433
No 445
>PHA03290 envelope glycoprotein I; Provisional
Probab=35.49 E-value=92 Score=26.56 Aligned_cols=38 Identities=18% Similarity=0.253 Sum_probs=27.7
Q ss_pred CeeEEEEccCCcCCCeEEEEEEEcCCCCe--EEEEEEEEe
Q psy14542 57 SDEVLVLDRVQREDAGMYQCHVSADDDSA--QMSAQVILG 94 (371)
Q Consensus 57 ~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~--~~~~~l~v~ 94 (371)
..-.|.|.+.+.+|+|.|.-+++-++... --.+.+.|.
T Consensus 127 ~~vLL~I~~P~~~DSGiY~LRV~Ldga~~sDvF~lsv~Vy 166 (357)
T PHA03290 127 AEIIFKINKPGIEDAGIYLLLVQLDHSRLFDGFFLGLNVY 166 (357)
T ss_pred cceEEEeCCCCcccCeeEEEEEEeCCCcccceEEEEEEEe
Confidence 55679999999999999999998654432 333444444
No 446
>PHA03289 envelope glycoprotein I; Provisional
Probab=34.88 E-value=97 Score=26.27 Aligned_cols=27 Identities=22% Similarity=0.307 Sum_probs=23.0
Q ss_pred CeeEEEEccCCcCCCeEEEEEEEcCCC
Q psy14542 57 SDEVLVLDRVQREDAGMYQCHVSADDD 83 (371)
Q Consensus 57 ~~~~l~i~~~~~~d~G~Y~C~~~~~~~ 83 (371)
....|.|.+.+.+|+|.|.-+++-+..
T Consensus 120 ~gvLL~I~~Pr~~DSGiYyLRV~Ldga 146 (352)
T PHA03289 120 KGLLLTIIEPRMSDTGIYYIRVSLAGR 146 (352)
T ss_pred CceEEEeCCCCcccCeeEEEEEEeCCC
Confidence 455799999999999999999986654
No 447
>PF15096 G6B: G6B family
Probab=33.03 E-value=22 Score=27.07 Aligned_cols=26 Identities=12% Similarity=0.286 Sum_probs=16.7
Q ss_pred CCcCCCeEEEEEEEcCCCCeEEEEEEEEe
Q psy14542 66 VQREDAGMYQCHVSADDDSAQMSAQVILG 94 (371)
Q Consensus 66 ~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~ 94 (371)
+...|+|.|.|..... .+....|.|.
T Consensus 81 Ls~GDSGTFfCkGr~e---~ESRT~LhVL 106 (224)
T PF15096_consen 81 LSAGDSGTFFCKGRQE---EESRTVLHVL 106 (224)
T ss_pred hhcCCccceEecCccc---ccceeeeeee
Confidence 4567999999996432 2344455555
No 448
>PHA03292 envelope glycoprotein I; Provisional
Probab=32.71 E-value=1e+02 Score=26.90 Aligned_cols=38 Identities=18% Similarity=0.260 Sum_probs=28.4
Q ss_pred CeeEEEEccCCcCCCeEEEEEEEcCCCC--eEEEEEEEEe
Q psy14542 57 SDEVLVLDRVQREDAGMYQCHVSADDDS--AQMSAQVILG 94 (371)
Q Consensus 57 ~~~~l~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~~l~v~ 94 (371)
....|.|.+.+.+|+|.|.-+++-+... +-..+.+.|+
T Consensus 126 ~~vLL~I~~P~~~DSGiY~LRV~Ldga~~aDvF~lsvfVy 165 (413)
T PHA03292 126 TNVLLNITGPQPADSGAYILRVKLDHAPTADVFGLSAFVY 165 (413)
T ss_pred cceEEEeCCCCcccceeEEEEEEeCCCccCceeEEEEEEe
Confidence 4567999999999999999999866543 3344555555
No 449
>smart00089 PKD Repeats in polycystic kidney disease 1 (PKD1) and other proteins. Polycystic kidney disease 1 protein contains 14 repeats, present elsewhere such as in microbial collagenases.
Probab=32.14 E-value=1.3e+02 Score=18.94 Aligned_cols=66 Identities=12% Similarity=0.121 Sum_probs=36.4
Q ss_pred EeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeCCeeEEEEccCCcCCCeEEEEEEE--cCCCCeEEEEEEEE
Q psy14542 23 VDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHVS--ADDDSAQMSAQVIL 93 (371)
Q Consensus 23 ~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~--~~~~~~~~~~~l~v 93 (371)
...|..+.|............+.|..++......... .......|.|.-.+. +..|.......+.|
T Consensus 11 ~~~~~~v~f~~~~~~~~~~~~~~W~fgdg~~~~~~~~-----~~~y~~~G~y~v~l~v~n~~g~~~~~~~i~v 78 (79)
T smart00089 11 GVAGESVTFTATSSDDGSIVSYTWDFGDGTSSTGPTV-----THTYTKPGTYTVTLTVTNAVGSASATVTVVV 78 (79)
T ss_pred CCCCCEEEEEEECCCCCCeEEEEEEeCCCCccCCCCE-----EEEeCCCcEEEEEEEEEcCCCcEEEEEEEEE
Confidence 4478899999854332345678897754422211111 223457888876654 55554444444443
No 450
>PF12988 DUF3872: Domain of unknown function, B. Theta Gene description (DUF3872); InterPro: IPR024355 This entry represents proteins of unknown function found primarily in Bacteroides species. The Bacteroides thetaiotaomicron gene coding for this protein is located in a conjugate transposon and appears to be upregulated in the presence of host or other bacterial species compared to growth in pure culture [, ].; PDB: 2L3B_A 2L7Q_A.
Probab=31.94 E-value=2e+02 Score=20.96 Aligned_cols=45 Identities=18% Similarity=0.346 Sum_probs=20.9
Q ss_pred eeEEecccceEEEeCCCcEEEeccCcEEEEEEecCCC----CCCeeEEEe
Q psy14542 3 LFIQVKSSLSIEMSPSGQVVVDVGHRIELHCRVSPKR----LSSAKAWLK 48 (371)
Q Consensus 3 ~~~~v~~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~----~~~~~~W~~ 48 (371)
|.|+-.=++++..-|-. -.+..|+++.|+|...... ....+.++.
T Consensus 25 LDIQQ~YpF~v~tmPVp-k~I~~GeTvEIR~~l~reG~y~~t~Y~iRYFQ 73 (137)
T PF12988_consen 25 LDIQQAYPFTVETMPVP-KKIKKGETVEIRCELKREGNYADTRYTIRYFQ 73 (137)
T ss_dssp S------SEEEEE-----SS--TTEEEEEEEEEEESS--SS---EEEEE-
T ss_pred cceeecCCcEEEEeccc-cccCCCCEEEEEEEEecCceecccEEEEEEEe
Confidence 44554556777777755 5688999999999775321 123466665
No 451
>PF09085 Adhes-Ig_like: Adhesion molecule, immunoglobulin-like; InterPro: IPR015169 This domain is found in mucosal vascular addressin cell adhesion molecule 1 proteins (MAdCAM-1). These are cell adhesion molecules expressed on the endothelium in mucosa that guide the specific homing of lymphocytes into mucosal tissues. MAdCAM-1 belongs to a subclass of the immunoglobulin superfamily (IgSF), the members of which are ligands for integrins []. The crystal structure of this domain has been reported; it adopts an immunoglobulin-like beta-sandwich structure, with seven strands arranged in two beta-sheets in a Greek-key topology [, ].; GO: 0007155 cell adhesion, 0016020 membrane; PDB: 1GSM_A 1BQS_A.
Probab=28.80 E-value=1.5e+02 Score=20.04 Aligned_cols=41 Identities=17% Similarity=0.207 Sum_probs=26.4
Q ss_pred ceEEEeCCCcEEEeccCcEEEEEEecC---CCC-CCeeEEEeCCEEEe
Q psy14542 11 LSIEMSPSGQVVVDVGHRIELHCRVSP---KRL-SSAKAWLKDGLVLR 54 (371)
Q Consensus 11 ~~~~~~p~~~~~~~~G~~v~l~C~~~~---~~~-~~~~~W~~~~~~~~ 54 (371)
-.++++|.. +..|..-.+.|+.-+ ..| ..++.|+.+++.+.
T Consensus 4 DqLtVSP~~---LVpg~dqevaCTAhnVtP~~p~~LSfslllGdqeLe 48 (110)
T PF09085_consen 4 DQLTVSPEA---LVPGRDQEVACTAHNVTPADPDALSFSLLLGDQELE 48 (110)
T ss_dssp SEEEEESSS---B-TT--SEEEEEEEEEB--STTTEEEEEEETTEE-T
T ss_pred cceeEChhH---hccCCCceeeeeeccccCCCCCeEEeeeeeCceeec
Confidence 356777776 778988899996543 233 44799999998875
No 452
>PF00801 PKD: PKD domain; InterPro: IPR000601 The PKD (Polycystic Kidney Disease) domain was first identified in the Polycystic Kidney Disease protein, polycystin-1 (PDK1 gene), and contains an Ig-like fold consisting of a beta-sandwich of seven strands in two sheets with a Greek key topology, although some members have additional strands []. Polycystin-1 is a large cell-surface glycoprotein involved in adhesive protein-protein and protein-carbohydrate interactions; however it is not clear if the PKD domain mediates any of these interactions. PKD domains are also found in other proteins, usually in the extracellular parts of proteins involved in interactions with other proteins. For example, domains with a PKD-type fold are found in archaeal surface layer proteins that protect the cell from extreme environments [], and in the human VPS10 domain-containing receptor SorCS2 [].; PDB: 1B4R_A 2KZW_A 2C4X_A 2C26_A 2Y72_B 3JQU_A 3JS7_B 1WGO_A 1L0Q_A.
Probab=27.76 E-value=1.5e+02 Score=18.17 Aligned_cols=52 Identities=12% Similarity=0.186 Sum_probs=32.2
Q ss_pred EEeccCcEEEEEEecCCCCCCeeEEEeCC-EEEeeCCeeEEEEccCCcCCCeEEEEEEE
Q psy14542 22 VVDVGHRIELHCRVSPKRLSSAKAWLKDG-LVLRRNSDEVLVLDRVQREDAGMYQCHVS 79 (371)
Q Consensus 22 ~~~~G~~v~l~C~~~~~~~~~~~~W~~~~-~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~ 79 (371)
.+..|+.+.|.... .......+.|..++ .........+. +....|.|.-.+.
T Consensus 7 ~~~~g~~v~f~~~~-~~g~~~~y~W~fgd~~~~~~~~~~t~-----ty~~~G~y~V~lt 59 (69)
T PF00801_consen 7 YVPTGQPVTFTASS-SDGSPVTYSWDFGDNGTVSTGSSVTH-----TYSSPGTYTVTLT 59 (69)
T ss_dssp CEBTTSEEEEEETT-TTSSECEEEEE-SSESEEECSSEEEE-----EESSSEEEEEEEE
T ss_pred EEcCCCEEEEEEEc-cCCCCeEEEEEECCCCccccCCCEEE-----EcCCCeEEEEEEE
Confidence 58899999999944 34446679999988 22222122222 2335888877655
No 453
>PHA03290 envelope glycoprotein I; Provisional
Probab=27.08 E-value=1.6e+02 Score=25.21 Aligned_cols=39 Identities=10% Similarity=0.076 Sum_probs=29.5
Q ss_pred eEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEecCcc
Q psy14542 275 SLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKY 313 (371)
Q Consensus 275 ~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~ 313 (371)
-|.|.+...+|+|.|.-++.-.......-|.+.+...|.
T Consensus 130 LL~I~~P~~~DSGiY~LRV~Ldga~~sDvF~lsv~Vyp~ 168 (357)
T PHA03290 130 IFKINKPGIEDAGIYLLLVQLDHSRLFDGFFLGLNVYPA 168 (357)
T ss_pred EEEeCCCCcccCeeEEEEEEeCCCcccceEEEEEEEecC
Confidence 589999999999999999987766655555555554444
No 454
>PHA03291 envelope glycoprotein I; Provisional
Probab=22.65 E-value=1.9e+02 Score=25.06 Aligned_cols=29 Identities=17% Similarity=0.255 Sum_probs=24.1
Q ss_pred CeeEEEEccCCcCCCeEEEEEEEcCCCCe
Q psy14542 57 SDEVLVLDRVQREDAGMYQCHVSADDDSA 85 (371)
Q Consensus 57 ~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~ 85 (371)
.+-.|.|.+...+|+|.|.-+++-+....
T Consensus 127 ~~vLL~i~~P~~~DsGiYvLRV~vdgat~ 155 (401)
T PHA03291 127 RQPLLRARGAARAVVGLYVLRVWVEGATN 155 (401)
T ss_pred cceEEEecCCCcccceeEEEEEEeCCCcc
Confidence 55679999999999999999998665444
No 455
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=20.90 E-value=3.5e+02 Score=19.88 Aligned_cols=65 Identities=12% Similarity=0.224 Sum_probs=35.4
Q ss_pred ceEEEeCCCcEEEeccCcEEEEEEecCCCC-CCeeEEEeCCEEEeeCCeeEEEEccCCcCCCeE--EEEEEE
Q psy14542 11 LSIEMSPSGQVVVDVGHRIELHCRVSPKRL-SSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGM--YQCHVS 79 (371)
Q Consensus 11 ~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~-~~~~~W~~~~~~~~~~~~~~l~i~~~~~~d~G~--Y~C~~~ 79 (371)
......|+. +.+.+|+.|+|.-......+ ...+.++.-...+......++.+. ....|. |.|...
T Consensus 54 ~n~~~~P~~-I~VkaGD~Vtl~vtN~d~~~H~f~i~~~gis~~I~pGet~TitF~---adKpG~Y~y~C~~H 121 (135)
T TIGR03096 54 FNVLNEPEA-LVVKKGTPVKVTVENKSPISEGFSIDAYGISEVIKAGETKTISFK---ADKAGAFTIWCQLH 121 (135)
T ss_pred eeeEEcCCE-EEECCCCEEEEEEEeCCCCccceEECCCCcceEECCCCeEEEEEE---CCCCEEEEEeCCCC
Confidence 345667787 99999999988764322221 112344333334443344444443 345674 566654
No 456
>COG4953 PbpC Membrane carboxypeptidase/penicillin-binding protein PbpC [Cell envelope biogenesis, outer membrane]
Probab=20.68 E-value=3.8e+02 Score=25.84 Aligned_cols=52 Identities=19% Similarity=0.290 Sum_probs=33.7
Q ss_pred EEEEEEecCCCCCCeeEEEeCCEEEeeC-CeeEEEEccCCcCCCeEEEEEEEcCCCCe
Q psy14542 29 IELHCRVSPKRLSSAKAWLKDGLVLRRN-SDEVLVLDRVQREDAGMYQCHVSADDDSA 85 (371)
Q Consensus 29 v~l~C~~~~~~~~~~~~W~~~~~~~~~~-~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~ 85 (371)
+.|.-. .......+.|+-||..+... .+... .-...+.|.|+-.+....|..
T Consensus 672 ~~l~l~--~~g~~~~~~W~lng~~l~~~~~~~~~---~w~~~~~G~~~ltVid~~G~~ 724 (733)
T COG4953 672 VTLKLI--AQGGRGPIYWFLNGEPLGEASRNRPV---TWKPEDAGYYKLTVIDASGRS 724 (733)
T ss_pred eEEEEE--cCCCcceeEEEeCCcCccccccCCcc---eeccCCCCeEEEEEEccCCce
Confidence 555552 22234569999999998864 12222 234567999999998776654
Done!