Query psy14542
Match_columns 371
No_of_seqs 266 out of 2735
Neff 11.6
Searched_HMMs 29240
Date Fri Aug 16 22:34:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14542.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14542hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b43_A Titin; I-SET IG fold, e 100.0 3.9E-43 1.3E-47 322.6 36.5 326 8-371 3-419 (570)
2 3b43_A Titin; I-SET IG fold, e 100.0 1.4E-42 4.9E-47 318.8 34.0 302 9-371 196-512 (570)
3 2rik_A Titin; I-SET IG fold, p 100.0 9E-39 3.1E-43 268.3 32.2 267 8-310 3-284 (284)
4 3laf_A Deleted in colorectal c 100.0 1E-39 3.4E-44 287.9 26.6 309 8-371 19-347 (403)
5 3dmk_A DOWN syndrome cell adhe 100.0 4.7E-39 1.6E-43 308.1 32.8 329 3-371 336-749 (816)
6 2v5m_A Dscam; neurobiology SPL 100.0 4E-40 1.4E-44 289.0 23.3 314 10-371 3-342 (388)
7 3qs7_E FL cytokine receptor; i 100.0 3.2E-39 1.1E-43 284.5 28.6 293 11-371 49-361 (423)
8 3p3y_A Neurofascin; IG domains 100.0 2E-39 6.9E-44 286.1 24.9 314 6-371 12-347 (404)
9 3kld_A Contactin 4, axcam, BIG 100.0 1.1E-39 3.8E-44 285.4 21.0 309 9-371 4-330 (384)
10 3qs9_E FL cytokine receptor; i 100.0 1.3E-38 4.5E-43 287.8 26.7 308 13-371 51-442 (527)
11 1e07_A Carcinoembryonic antige 100.0 1.6E-37 5.5E-42 289.8 34.6 322 12-371 205-594 (642)
12 2ec8_A MAST/stem cell growth f 100.0 2.2E-38 7.4E-43 288.7 26.3 307 3-371 107-441 (524)
13 1bih_A Hemolin; insect immunit 100.0 7.1E-39 2.4E-43 281.7 21.6 317 6-371 2-344 (395)
14 2ec8_A MAST/stem cell growth f 100.0 3.7E-38 1.3E-42 287.1 26.9 305 4-371 30-349 (524)
15 2yd9_A Receptor-type tyrosine- 100.0 1.5E-37 5E-42 263.5 26.6 272 8-313 4-294 (304)
16 1cs6_A Axonin-1; neural cell a 100.0 2.3E-38 7.9E-43 277.2 21.2 307 9-371 3-329 (382)
17 1qz1_A Neural cell adhesion mo 100.0 4.7E-37 1.6E-41 258.8 27.4 266 10-310 2-290 (291)
18 1e07_A Carcinoembryonic antige 100.0 1.9E-36 6.4E-41 282.6 32.2 293 10-371 112-416 (642)
19 2wim_A N-CAM 2, NCAM2, neural 100.0 1E-36 3.5E-41 256.7 24.4 268 9-313 3-287 (291)
20 3laf_A Deleted in colorectal c 100.0 1.7E-36 5.8E-41 267.3 25.1 273 3-312 114-403 (403)
21 1z7z_I Intercellular adhesion 100.0 1.8E-36 6E-41 271.0 24.7 312 13-371 2-405 (450)
22 2ocw_A Polymeric-immunoglobuli 100.0 4.4E-35 1.5E-39 270.5 32.1 315 17-371 7-481 (585)
23 3dmk_A DOWN syndrome cell adhe 100.0 4.7E-36 1.6E-40 287.3 26.3 283 21-371 258-561 (816)
24 2y25_A Myomesin; structural pr 100.0 1.7E-36 5.9E-41 258.5 20.5 273 9-311 6-316 (317)
25 1wio_A CD4, T-cell surface gly 100.0 5.9E-36 2E-40 259.9 23.2 258 21-371 4-318 (363)
26 3kld_A Contactin 4, axcam, BIG 100.0 2.2E-35 7.7E-40 258.1 26.5 254 19-309 110-382 (384)
27 1qgc_4 Protein (immunoglobulin 100.0 2.9E-35 1E-39 262.2 26.6 309 11-371 2-380 (438)
28 2rcj_C Light chain; immunoglob 100.0 4.1E-35 1.4E-39 267.0 26.9 309 15-371 5-358 (523)
29 2rcj_C Light chain; immunoglob 100.0 5.8E-35 2E-39 266.0 26.2 310 8-371 112-462 (523)
30 3ejj_X Macrophage colony-stimu 100.0 1.5E-34 5E-39 243.3 24.1 270 8-313 2-284 (289)
31 2o26_X MAST/stem cell growth f 100.0 1.2E-34 4E-39 243.9 22.5 264 8-312 10-290 (290)
32 4fqp_A Poliovirus receptor; im 100.0 2E-34 7E-39 245.2 23.1 268 16-313 6-307 (313)
33 1cs6_A Axonin-1; neural cell a 100.0 1.9E-34 6.4E-39 252.4 23.4 253 18-309 108-381 (382)
34 3p3y_A Neurofascin; IG domains 100.0 3.1E-34 1.1E-38 252.9 24.2 272 3-310 108-403 (404)
35 1ry7_B FGFR-3, fibroblast grow 100.0 2.2E-35 7.5E-40 253.6 14.0 272 11-313 10-330 (334)
36 3v2a_R Vascular endothelial gr 100.0 7.6E-36 2.6E-40 284.5 11.8 323 8-371 221-701 (772)
37 3rjd_A High affinity immunoglo 100.0 3.4E-33 1.2E-37 231.5 26.3 242 10-300 1-249 (262)
38 1itb_B Type 1 interleukin-1 re 100.0 4.7E-35 1.6E-39 249.4 15.1 263 21-310 15-314 (315)
39 2y23_A Myomesin; structural pr 100.0 2.5E-33 8.6E-38 238.4 25.2 259 21-309 11-311 (312)
40 4fom_A Poliovirus receptor-rel 100.0 8E-35 2.7E-39 247.1 14.5 263 21-313 9-303 (308)
41 3oq3_B IFN-alpha/beta binding 100.0 2.7E-33 9.2E-38 239.8 22.4 259 21-308 39-328 (329)
42 2v5m_A Dscam; neurobiology SPL 100.0 2.6E-33 8.8E-38 245.7 22.1 268 3-308 96-387 (388)
43 1bih_A Hemolin; insect immunit 100.0 3.8E-33 1.3E-37 245.2 23.0 255 21-308 110-394 (395)
44 1z7z_I Intercellular adhesion 100.0 2.8E-32 9.7E-37 243.7 28.2 288 4-311 79-450 (450)
45 3u83_A Poliovirus receptor-rel 100.0 1.5E-32 5.2E-37 235.5 24.4 271 10-313 13-323 (331)
46 4dkd_C Macrophage colony-stimu 100.0 2.8E-33 9.5E-38 235.8 16.8 268 9-313 3-284 (292)
47 3qs7_E FL cytokine receptor; i 100.0 1.1E-32 3.8E-37 242.9 21.1 261 21-313 149-417 (423)
48 3o4o_C Interleukin-1 receptor 100.0 4.3E-34 1.5E-38 246.0 11.6 271 8-309 16-334 (339)
49 4dep_C Interleukin-1 receptor 100.0 1.3E-32 4.3E-37 237.8 20.3 266 15-312 11-335 (349)
50 2ocw_A Polymeric-immunoglobuli 100.0 6.3E-31 2.2E-35 242.8 32.1 294 2-313 104-549 (585)
51 2wng_A Tyrosine-protein phosph 100.0 5.7E-32 1.9E-36 231.5 21.6 268 10-306 3-316 (327)
52 3qs9_E FL cytokine receptor; i 100.0 5.6E-32 1.9E-36 244.5 22.4 258 4-313 223-513 (527)
53 3vh8_G Killer cell immunoglobu 100.0 3.7E-32 1.3E-36 231.4 18.9 272 5-312 19-315 (316)
54 2oz4_A Intercellular adhesion 100.0 2.5E-31 8.6E-36 220.5 21.7 239 22-311 14-265 (265)
55 3mjg_X Beta-type platelet-deri 100.0 1.4E-31 4.6E-36 225.1 20.2 247 21-313 10-281 (289)
56 3v2a_R Vascular endothelial gr 100.0 3.7E-32 1.3E-36 259.1 16.6 300 21-371 136-459 (772)
57 1igt_B IGG2A intact antibody - 100.0 1.7E-30 5.8E-35 231.7 25.1 302 21-371 10-383 (444)
58 1iga_A IGA1; immunoglobulin; N 100.0 6E-30 2E-34 230.0 27.0 309 13-371 4-387 (475)
59 2rik_A Titin; I-SET IG fold, p 100.0 9.8E-30 3.3E-34 213.2 23.7 219 96-371 4-227 (284)
60 1hzh_H IGG, immunoglobulin hea 100.0 4.8E-30 1.6E-34 229.6 21.2 306 17-371 7-392 (457)
61 1wio_A CD4, T-cell surface gly 100.0 1.2E-29 4.1E-34 220.2 20.5 250 13-308 100-361 (363)
62 1qgc_4 Protein (immunoglobulin 100.0 6.7E-30 2.3E-34 227.6 18.5 280 10-306 116-435 (438)
63 1igy_B IGG1 intact antibody MA 100.0 1.1E-31 3.7E-36 238.7 6.3 302 21-371 9-373 (434)
64 2nzi_A Titin; IG-domain, FNIII 100.0 6.5E-28 2.2E-32 204.3 24.1 247 9-301 3-281 (305)
65 2yd9_A Receptor-type tyrosine- 100.0 3.7E-28 1.3E-32 205.6 20.1 224 96-371 5-240 (304)
66 1qz1_A Neural cell adhesion mo 100.0 1.1E-27 3.7E-32 201.5 19.8 214 106-371 12-231 (291)
67 2wqr_A IG epsilon chain C regi 100.0 7.1E-29 2.4E-33 211.8 11.9 264 10-299 7-309 (323)
68 2jll_A NCAM2, neural cell adhe 100.0 3.7E-26 1.3E-30 200.2 29.3 256 11-302 2-280 (389)
69 1za6_B IGG heavy chain; immuno 100.0 5.2E-27 1.8E-31 202.0 19.6 259 17-300 7-331 (344)
70 2wim_A N-CAM 2, NCAM2, neural 99.9 2.3E-26 8E-31 193.3 19.0 218 97-371 4-229 (291)
71 1igt_B IGG2A intact antibody - 99.9 8.6E-27 2.9E-31 207.8 16.1 265 10-299 123-434 (444)
72 1zvo_C Myeloma immunoglobulin 99.9 7.1E-25 2.4E-29 198.2 28.7 304 17-371 7-438 (512)
73 2y25_A Myomesin; structural pr 99.9 5.5E-27 1.9E-31 199.7 13.8 236 97-371 7-257 (317)
74 1hzh_H IGG, immunoglobulin hea 99.9 4.3E-26 1.5E-30 203.9 16.8 266 10-300 132-444 (457)
75 1ry7_B FGFR-3, fibroblast grow 99.9 4.1E-27 1.4E-31 202.0 8.5 220 100-371 12-257 (334)
76 3oq3_B IFN-alpha/beta binding 99.9 1.9E-25 6.4E-30 191.1 18.0 206 108-371 41-267 (329)
77 1igy_B IGG1 intact antibody MA 99.9 6.6E-27 2.3E-31 207.9 9.0 265 10-299 119-424 (434)
78 2yd1_A Tyrosine-protein phosph 99.9 9.2E-25 3.1E-29 174.7 20.4 191 96-313 5-203 (212)
79 2j8h_A Titin, connectin; cardi 99.9 8.1E-25 2.8E-29 172.9 19.0 188 97-310 4-197 (197)
80 4dep_C Interleukin-1 receptor 99.9 3.8E-25 1.3E-29 190.9 18.3 225 105-371 16-265 (349)
81 3o4o_C Interleukin-1 receptor 99.9 5.4E-26 1.8E-30 195.4 12.7 225 96-371 17-265 (339)
82 2iep_A Muscle-specific kinase 99.9 5.1E-25 1.7E-29 173.3 16.3 182 96-312 6-192 (192)
83 2a38_A Titin; Z1Z2, structural 99.9 1E-24 3.6E-29 171.8 17.9 184 96-309 4-194 (194)
84 1itb_B Type 1 interleukin-1 re 99.9 9.7E-26 3.3E-30 191.8 12.6 216 105-371 14-244 (315)
85 2nzi_A Titin; IG-domain, FNIII 99.9 6E-24 2E-28 179.8 22.2 237 97-371 4-246 (305)
86 3lcy_A Titin; A-BAND, IG tande 99.9 6.4E-24 2.2E-28 167.7 20.7 183 96-311 6-197 (197)
87 3rjd_A High affinity immunoglo 99.9 4.4E-24 1.5E-28 176.5 20.5 200 99-370 3-205 (262)
88 2o26_X MAST/stem cell growth f 99.9 7.4E-25 2.5E-29 184.0 15.9 203 96-371 11-224 (290)
89 2y23_A Myomesin; structural pr 99.9 2.6E-24 8.8E-29 182.7 19.3 225 107-371 12-257 (312)
90 1iga_A IGA1; immunoglobulin; N 99.9 7.8E-24 2.7E-28 190.2 23.5 264 10-300 127-444 (475)
91 3rbs_A Myomesin-1; immunoglobu 99.9 1.9E-24 6.6E-29 171.4 17.1 184 98-309 4-206 (207)
92 2wv3_A Neuroplastin; igcam, me 99.9 7.1E-24 2.4E-28 166.5 20.0 175 97-309 3-189 (190)
93 3vh8_G Killer cell immunoglobu 99.9 1E-24 3.5E-29 185.5 16.4 224 87-371 15-252 (316)
94 2c5d_C AXL oncogene, tyrosine- 99.9 5.3E-24 1.8E-28 167.9 19.3 184 98-308 3-191 (195)
95 2oz4_A Intercellular adhesion 99.9 3.3E-24 1.1E-28 177.6 18.8 196 107-371 14-220 (265)
96 2a38_A Titin; Z1Z2, structural 99.9 6.2E-24 2.1E-28 167.4 19.0 177 8-213 3-193 (194)
97 2r15_A Myomesin-1; sarcomeric 99.9 1.2E-23 4E-28 168.2 20.5 176 109-311 15-211 (212)
98 4fom_A Poliovirus receptor-rel 99.9 8.1E-25 2.8E-29 185.5 14.4 228 103-371 6-248 (308)
99 2yd6_A PTPRD protein; hydrolas 99.9 1.7E-23 5.8E-28 167.3 20.4 191 96-313 5-207 (212)
100 1epf_A NCAM, protein (neural c 99.9 1.3E-23 4.3E-28 165.2 19.0 162 10-197 2-177 (191)
101 3ejj_X Macrophage colony-stimu 99.9 2E-24 6.9E-29 181.3 15.4 209 96-371 3-222 (289)
102 4fqp_A Poliovirus receptor; im 99.9 5.6E-24 1.9E-28 180.7 18.2 227 106-371 10-253 (313)
103 2v5t_A NCAM2, N-CAM 2, neural 99.9 5.1E-24 1.7E-28 167.1 16.3 174 104-310 10-188 (189)
104 2yd6_A PTPRD protein; hydrolas 99.9 2.3E-23 8E-28 166.5 20.0 179 8-214 4-203 (212)
105 2j8h_A Titin, connectin; cardi 99.9 1.9E-23 6.4E-28 165.1 19.2 176 9-214 3-196 (197)
106 3sgj_C Human FCG3A receptor; r 99.9 1.2E-23 4E-28 166.7 17.7 168 8-214 5-173 (204)
107 1fnl_A Low affinity immunoglob 99.9 1.6E-23 5.6E-28 162.0 18.1 154 8-197 5-159 (175)
108 2yd1_A Tyrosine-protein phosph 99.9 4E-23 1.4E-27 165.1 20.9 175 8-214 4-199 (212)
109 3u83_A Poliovirus receptor-rel 99.9 4.1E-24 1.4E-28 183.0 16.0 225 106-371 24-268 (331)
110 3lcy_A Titin; A-BAND, IG tande 99.9 4.4E-23 1.5E-27 162.9 19.8 177 8-214 5-195 (197)
111 3grw_A Fibroblast growth facto 99.9 2.1E-23 7.3E-28 170.2 18.1 180 106-313 25-221 (241)
112 1epf_A NCAM, protein (neural c 99.9 2.5E-23 8.6E-28 163.4 17.9 175 105-308 11-189 (191)
113 2va4_A NCAM2, N-CAM 2, neural 99.9 7.6E-23 2.6E-27 160.8 20.1 166 108-309 16-192 (192)
114 2iep_A Muscle-specific kinase 99.9 1.2E-23 4.2E-28 165.4 15.4 174 8-214 5-189 (192)
115 1f2q_A High affinity immunoglo 99.9 1.3E-23 4.5E-28 162.7 15.3 169 7-214 1-170 (176)
116 1rhf_A Tyrosine-protein kinase 99.9 4.8E-23 1.6E-27 160.5 18.2 175 99-309 4-182 (182)
117 2jll_A NCAM2, neural cell adhe 99.9 1.5E-22 5.2E-27 177.2 23.6 185 98-313 2-197 (389)
118 2v44_A NCAM2, neural cell adhe 99.9 3.7E-23 1.3E-27 162.2 17.6 163 11-202 3-177 (189)
119 2wng_A Tyrosine-protein phosph 99.9 5E-24 1.7E-28 182.1 13.6 230 100-371 6-257 (327)
120 4fa8_A Secreted protein BARF1; 99.9 1.1E-23 3.7E-28 166.1 14.4 160 21-204 3-194 (203)
121 2wv3_A Neuroplastin; igcam, me 99.9 1.7E-22 6E-27 158.5 21.3 176 10-214 3-189 (190)
122 2v44_A NCAM2, neural cell adhe 99.9 7.7E-23 2.6E-27 160.4 19.1 169 106-308 12-185 (189)
123 4fa8_A Secreted protein BARF1; 99.9 3.2E-23 1.1E-27 163.4 16.2 176 107-303 4-195 (203)
124 3rbs_A Myomesin-1; immunoglobu 99.9 5.7E-23 1.9E-27 162.9 17.7 162 21-213 12-205 (207)
125 2va4_A NCAM2, N-CAM 2, neural 99.9 1.2E-22 4E-27 159.7 18.6 180 10-213 2-191 (192)
126 3ojm_B Fibroblast growth facto 99.9 7.1E-23 2.4E-27 165.9 17.5 181 105-313 28-224 (231)
127 3k0w_A Mucosa-associated lymph 99.9 9.3E-23 3.2E-27 163.7 17.7 169 8-214 16-201 (218)
128 2c1o_A IGK-C protein; FAB frag 99.9 3.4E-23 1.2E-27 170.3 15.2 210 66-301 11-246 (254)
129 2v9r_A Roundabout homolog 1; p 99.9 4.8E-23 1.6E-27 164.7 15.5 197 92-313 4-205 (212)
130 2ifg_A High affinity nerve gro 99.9 1.1E-24 3.7E-29 187.6 6.2 199 70-312 136-347 (347)
131 3k0w_A Mucosa-associated lymph 99.9 1.1E-22 3.7E-27 163.3 17.1 174 98-313 19-205 (218)
132 2v5t_A NCAM2, N-CAM 2, neural 99.9 2E-22 6.8E-27 158.0 18.1 173 10-214 2-187 (189)
133 3s97_C Contactin-1; carbonic a 99.9 5.5E-23 1.9E-27 162.8 14.6 181 105-309 17-200 (201)
134 3sgj_C Human FCG3A receptor; r 99.9 6.6E-23 2.3E-27 162.4 15.0 168 97-313 7-177 (204)
135 2gi7_A GPVI protein; IG-like d 99.9 6.8E-23 2.3E-27 159.8 14.8 163 96-299 7-169 (184)
136 3jz7_A MCAR, CAR, coxsackievir 99.9 8.6E-23 2.9E-27 163.4 15.8 190 107-312 11-214 (214)
137 2c5d_C AXL oncogene, tyrosine- 99.9 2.1E-22 7.3E-27 158.7 17.5 168 10-213 2-191 (195)
138 1f97_A Junction adhesion molec 99.9 1.3E-22 4.4E-27 162.1 16.2 180 106-310 11-207 (212)
139 1vca_A VCAM-D1,2, human vascul 99.9 5.2E-22 1.8E-26 156.9 18.8 168 11-197 1-176 (202)
140 1fnl_A Low affinity immunoglob 99.9 2.3E-22 7.9E-27 155.5 16.4 165 97-310 7-174 (175)
141 3ry4_A Low affinity immunoglob 99.9 2.5E-22 8.6E-27 154.6 16.5 158 8-201 2-159 (170)
142 1zvo_C Myeloma immunoglobulin 99.9 3.3E-21 1.1E-25 174.3 26.4 260 25-310 149-505 (512)
143 1f2q_A High affinity immunoglo 99.9 7.1E-23 2.4E-27 158.6 13.2 168 97-313 4-174 (176)
144 2vr9_A Roundabout 1, ROBO; imm 99.9 1.4E-22 4.6E-27 162.7 14.8 185 96-310 8-206 (217)
145 1uct_A Immunoglobulin alpha FC 99.9 8.7E-23 3E-27 163.3 13.5 187 96-313 8-201 (218)
146 4dkd_C Macrophage colony-stimu 99.9 7.2E-23 2.5E-27 172.1 13.5 208 96-371 3-222 (292)
147 2x1w_L Vascular endothelial gr 99.9 3.1E-22 1.1E-26 159.9 16.6 175 106-313 17-210 (213)
148 1oll_A NK receptor; immune sys 99.9 2.1E-22 7E-27 157.6 14.6 181 97-309 4-187 (188)
149 3p2t_A Leukocyte immunoglobuli 99.9 1.5E-22 5.2E-27 159.6 13.4 181 97-309 5-195 (196)
150 1vca_A VCAM-D1,2, human vascul 99.9 1.3E-21 4.3E-26 154.7 18.7 169 109-313 14-200 (202)
151 2v9r_A Roundabout homolog 1; p 99.9 8.3E-23 2.8E-27 163.3 11.8 183 8-227 7-209 (212)
152 2d3v_A Leukocyte immunoglobuli 99.9 8E-23 2.7E-27 161.2 10.8 171 96-298 4-180 (196)
153 1rhf_A Tyrosine-protein kinase 99.9 7.3E-22 2.5E-26 153.8 16.1 157 10-202 2-172 (182)
154 1mq8_A ICAM-1, intercellular a 99.9 1.2E-22 4.1E-27 167.8 11.9 263 13-312 2-284 (291)
155 1oll_A NK receptor; immune sys 99.9 2.5E-21 8.5E-26 151.5 18.8 157 9-197 3-171 (188)
156 1ugn_A LIR1, leukocyte immunog 99.9 5E-22 1.7E-26 156.9 14.8 164 8-197 3-179 (198)
157 2d3v_A Leukocyte immunoglobuli 99.9 5.4E-22 1.8E-26 156.4 14.8 164 8-197 3-178 (196)
158 1ugn_A LIR1, leukocyte immunog 99.9 3.1E-22 1E-26 158.1 13.1 182 96-309 4-197 (198)
159 3r4d_A CEA-related cell adhesi 99.9 8E-22 2.7E-26 157.0 15.5 191 107-313 10-203 (208)
160 2gi7_A GPVI protein; IG-like d 99.9 5.9E-22 2E-26 154.5 14.3 158 7-197 5-166 (184)
161 1za6_B IGG heavy chain; immuno 99.9 9.5E-22 3.3E-26 169.1 16.8 180 103-304 7-211 (344)
162 2r15_A Myomesin-1; sarcomeric 99.9 5.8E-21 2E-25 152.5 19.7 166 23-214 14-209 (212)
163 2wqr_A IG epsilon chain C regi 99.9 6E-22 2E-26 168.9 14.6 211 112-371 25-256 (323)
164 2vr9_A Roundabout 1, ROBO; imm 99.9 5.7E-22 2E-26 159.0 13.4 178 8-206 7-200 (217)
165 3mjg_X Beta-type platelet-deri 99.9 1.2E-21 4E-26 164.4 15.6 201 106-371 10-216 (289)
166 3p2t_A Leukocyte immunoglobuli 99.9 2.1E-21 7.3E-26 153.0 15.8 164 9-200 4-179 (196)
167 1uct_A Immunoglobulin alpha FC 99.9 7.6E-22 2.6E-26 157.8 13.2 159 8-197 7-179 (218)
168 1nbq_A JAM, junctional adhesio 99.9 2.7E-22 9.3E-27 159.9 10.5 181 106-309 14-208 (209)
169 3ojm_B Fibroblast growth facto 99.9 1.2E-21 4.3E-26 158.6 14.6 183 10-214 15-220 (231)
170 3ry4_A Low affinity immunoglob 99.9 2.1E-21 7.1E-26 149.4 15.1 162 98-308 5-169 (170)
171 1b6u_A KIR2DL3, P58 killer cel 99.9 1.3E-21 4.3E-26 160.0 14.1 220 96-371 6-237 (257)
172 2ny1_B T-cell surface glycopro 99.9 4.8E-21 1.7E-25 149.4 16.8 169 107-313 6-182 (184)
173 3grw_A Fibroblast growth facto 99.9 4E-21 1.4E-25 156.7 16.8 174 21-214 25-217 (241)
174 1p6f_A NKP46, natural cytotoxi 99.9 9.2E-21 3.1E-25 153.8 18.6 159 7-197 4-174 (242)
175 3bp6_B Programmed cell death 1 99.9 5.3E-21 1.8E-25 151.5 16.4 171 106-312 12-195 (202)
176 1f97_A Junction adhesion molec 99.9 1.6E-21 5.4E-26 155.8 13.2 172 11-202 2-195 (212)
177 1b6u_A KIR2DL3, P58 killer cel 99.9 6.9E-21 2.3E-25 155.7 16.4 217 8-261 5-241 (257)
178 4frw_A Poliovirus receptor-rel 99.9 2.5E-21 8.4E-26 155.2 13.4 192 103-309 6-210 (218)
179 2fbo_J V1V2;, variable region- 99.9 1.9E-21 6.5E-26 159.5 13.0 191 105-307 11-249 (250)
180 1jbj_A CD3 epsilon and gamma e 99.9 1.9E-21 6.5E-26 151.7 12.3 148 109-300 12-179 (186)
181 3b5h_A Cervical EMMPRIN, HAB18 99.9 2.2E-20 7.4E-25 145.7 18.3 161 108-310 10-183 (184)
182 1hng_A CD2; T lymphocyte adhes 99.9 1.2E-21 4.2E-26 151.3 10.7 164 108-308 8-174 (176)
183 1p6f_A NKP46, natural cytotoxi 99.9 7.1E-21 2.4E-25 154.4 15.5 186 96-313 6-194 (242)
184 4f80_A Butyrophilin subfamily 99.9 1.4E-20 4.8E-25 151.8 16.5 171 17-214 10-212 (226)
185 3s97_C Contactin-1; carbonic a 99.9 3E-21 1E-25 152.8 12.3 171 13-214 10-200 (201)
186 1hng_A CD2; T lymphocyte adhes 99.9 1.6E-20 5.5E-25 145.0 16.0 146 21-206 6-170 (176)
187 3jz7_A MCAR, CAR, coxsackievir 99.9 4.2E-21 1.4E-25 153.5 13.1 162 21-214 10-211 (214)
188 3bp6_B Programmed cell death 1 99.9 1.5E-20 5.3E-25 148.8 15.8 169 12-214 4-192 (202)
189 3sbw_C Programmed cell death 1 99.9 4.6E-20 1.6E-24 148.4 18.9 186 107-313 12-214 (222)
190 3b5h_A Cervical EMMPRIN, HAB18 99.9 6E-20 2.1E-24 143.1 18.7 165 21-214 8-182 (184)
191 3r4d_A CEA-related cell adhesi 99.9 3.1E-20 1.1E-24 147.8 16.9 157 14-201 3-188 (208)
192 2ifg_A High affinity nerve gro 99.8 1.8E-21 6.1E-26 167.5 9.9 181 8-214 156-344 (347)
193 1nkr_A P58-CL42 KIR; inhibitor 99.8 5.2E-20 1.8E-24 145.6 17.5 162 7-197 5-183 (201)
194 2ny1_B T-cell surface glycopro 99.8 2.7E-20 9.3E-25 145.1 15.1 148 21-214 5-178 (184)
195 2if7_A SLAM family member 6; N 99.8 1.1E-19 3.8E-24 142.6 17.5 147 21-202 8-182 (193)
196 3mj8_L Stimulatory hamster ant 99.8 1.9E-20 6.5E-25 149.6 13.1 184 101-304 5-207 (213)
197 2x1w_L Vascular endothelial gr 99.8 2.7E-20 9.2E-25 148.7 13.9 177 17-214 14-206 (213)
198 2pet_A Lutheran blood group gl 99.8 1E-20 3.6E-25 153.1 11.3 192 104-308 8-229 (231)
199 1jbj_A CD3 epsilon and gamma e 99.8 1.6E-20 5.4E-25 146.5 11.5 144 21-201 9-178 (186)
200 2fbo_J V1V2;, variable region- 99.8 1.6E-20 5.3E-25 154.0 11.9 174 20-197 11-235 (250)
201 3mj8_L Stimulatory hamster ant 99.8 7.4E-20 2.5E-24 146.2 15.4 172 12-204 3-205 (213)
202 4f80_A Butyrophilin subfamily 99.8 1.8E-19 6.1E-24 145.3 17.6 182 106-311 14-214 (226)
203 1nbq_A JAM, junctional adhesio 99.8 4.2E-21 1.4E-25 152.9 7.3 176 9-205 3-200 (209)
204 3shs_A HOC head outer capsid p 99.8 3.4E-18 1.2E-22 134.2 23.2 244 10-296 2-280 (304)
205 3sbw_C Programmed cell death 1 99.8 3.6E-19 1.2E-23 143.1 18.2 170 17-214 7-210 (222)
206 2if7_A SLAM family member 6; N 99.8 1.8E-19 6E-24 141.4 15.7 170 108-305 10-187 (193)
207 2pet_A Lutheran blood group gl 99.8 9E-20 3.1E-24 147.6 14.4 164 20-197 9-211 (231)
208 1nkr_A P58-CL42 KIR; inhibitor 99.8 2.4E-19 8.2E-24 141.8 16.5 170 96-296 7-183 (201)
209 3d9a_L Light chain of hyhel10 99.8 2E-19 6.9E-24 143.7 16.1 169 12-197 3-199 (213)
210 1sy6_A T-cell surface glycopro 99.8 1E-19 3.5E-24 143.9 14.1 156 109-309 16-203 (204)
211 3d9a_L Light chain of hyhel10 99.8 1.7E-19 5.7E-24 144.1 14.7 181 105-306 10-209 (213)
212 1sy6_A T-cell surface glycopro 99.8 7.7E-20 2.6E-24 144.6 11.8 144 23-201 15-192 (204)
213 3nl4_L Antigen binding fragmen 99.8 3.7E-19 1.3E-23 142.1 15.8 166 106-294 11-198 (213)
214 4i0k_A CD276 antigen; immunogl 99.8 1.5E-19 5E-24 145.4 13.4 186 107-313 6-209 (222)
215 1lk3_L 9D7 light chain; antige 99.8 4.6E-19 1.6E-23 141.2 16.0 176 105-303 9-205 (210)
216 3s96_B 3B5H10 FAB light chain; 99.8 1.9E-19 6.6E-24 144.3 13.7 173 11-203 2-211 (218)
217 4fmk_A Poliovirus receptor-rel 99.8 6.1E-19 2.1E-23 141.9 16.6 197 103-310 8-219 (225)
218 3pv7_A B7-H6, IG-like domain-c 99.8 3.9E-19 1.3E-23 145.5 15.5 176 10-201 2-213 (248)
219 3nl4_L Antigen binding fragmen 99.8 5.4E-19 1.9E-23 141.1 15.9 168 11-197 2-199 (213)
220 4frw_A Poliovirus receptor-rel 99.8 1.2E-19 4E-24 145.4 12.1 164 19-206 7-205 (218)
221 3s96_B 3B5H10 FAB light chain; 99.8 3.1E-19 1E-23 143.1 14.3 189 100-304 4-214 (218)
222 1hnf_A CD2; T lymphocyte adhes 99.8 6E-19 2E-23 136.2 15.2 162 109-308 12-179 (182)
223 3r06_A Anti-mouse CD3epsilon a 99.8 7.4E-19 2.5E-23 140.3 16.1 170 11-197 2-199 (213)
224 1dr9_A B7-1 (CD80), T lymphocy 99.8 5.8E-19 2E-23 139.6 14.7 160 21-205 4-194 (201)
225 3tv3_L PGT128 light chain, IG 99.8 3.9E-19 1.3E-23 141.7 13.9 164 21-204 10-203 (211)
226 1lk3_L 9D7 light chain; antige 99.8 8.8E-19 3E-23 139.6 15.7 167 13-197 4-198 (210)
227 3mj6_A Junctional adhesion mol 99.8 2.5E-19 8.4E-24 148.5 12.9 187 106-313 15-240 (268)
228 1q0x_L FAB 9B1, light chain; a 99.8 1.6E-18 5.6E-23 138.2 17.0 167 13-197 4-201 (212)
229 2zg1_A Sialic acid-binding IG- 99.8 1.5E-18 5E-23 138.7 16.6 182 105-307 9-212 (214)
230 3pv7_A B7-H6, IG-like domain-c 99.8 6.7E-19 2.3E-23 144.1 14.8 183 105-308 12-224 (248)
231 1gsm_A Madcam-1, mucosal addre 99.8 6.2E-18 2.1E-22 132.0 19.0 173 12-200 7-194 (210)
232 3mj6_A Junctional adhesion mol 99.8 1.6E-18 5.4E-23 143.6 16.7 206 11-239 6-256 (268)
233 1q9r_B S25-2 FAB (IGG1K) heavy 99.8 9.8E-19 3.4E-23 140.6 14.8 191 105-306 9-219 (222)
234 1q0x_L FAB 9B1, light chain; a 99.8 7.2E-19 2.5E-23 140.3 13.8 178 105-303 9-208 (212)
235 2xzc_L FAB A.17 light chain; i 99.8 1.1E-18 3.7E-23 139.7 14.8 165 17-197 7-201 (216)
236 3tv3_L PGT128 light chain, IG 99.8 3.4E-19 1.2E-23 142.1 11.8 180 103-304 7-205 (211)
237 2vol_A Murine IGG FC; FC, zinc 99.8 3.5E-19 1.2E-23 141.4 11.7 169 11-197 2-194 (207)
238 3sob_L Antibody light chain; b 99.8 3.3E-18 1.1E-22 138.9 17.7 171 10-197 24-222 (237)
239 3r06_A Anti-mouse CD3epsilon a 99.8 1.8E-18 6.1E-23 138.1 15.8 177 106-303 11-206 (213)
240 2c1o_A IGK-C protein; FAB frag 99.8 1.6E-18 5.4E-23 142.4 15.9 173 9-197 37-241 (254)
241 2ghw_B Anti-SARS SCFV antibody 99.8 7E-18 2.4E-22 137.9 19.6 191 104-309 10-241 (247)
242 3sob_L Antibody light chain; b 99.8 1.9E-18 6.5E-23 140.4 16.1 183 106-306 34-232 (237)
243 2rgs_A I, IG gamma-2B heavy ch 99.8 1.2E-19 4E-24 145.4 8.5 171 8-197 7-202 (218)
244 1f3r_B FV antibody fragment; I 99.8 1.6E-18 5.4E-23 142.6 15.0 199 104-313 8-248 (257)
245 3umt_A SCFV heavy chain and li 99.8 7.4E-18 2.5E-22 138.5 19.0 200 102-313 8-248 (256)
246 1dr9_A B7-1 (CD80), T lymphocy 99.8 1.3E-18 4.4E-23 137.6 13.9 176 107-306 5-197 (201)
247 1c1e_H Catalytic antibody 1E9 99.8 1.6E-18 5.6E-23 139.0 14.6 189 103-306 7-216 (219)
248 1nqb_A Single-chain antibody f 99.8 9.2E-18 3.1E-22 137.8 19.2 195 103-312 7-235 (256)
249 3qib_D 2B4 beta chain; IG doma 99.8 6.3E-19 2.2E-23 146.1 12.2 217 66-301 3-246 (270)
250 4fmk_A Poliovirus receptor-rel 99.8 1.9E-18 6.4E-23 139.0 13.9 163 21-204 11-209 (225)
251 2p1y_A Bispecific alpha/beta T 99.8 8.7E-18 3E-22 136.5 17.5 170 13-197 3-221 (238)
252 1nfd_E H57 FAB; complex (immun 99.8 1.5E-19 5.3E-24 144.2 6.8 181 105-302 8-204 (212)
253 2xzc_L FAB A.17 light chain; i 99.8 3.1E-18 1E-22 137.1 14.3 184 105-306 9-211 (216)
254 4i0k_A CD276 antigen; immunogl 99.8 9.1E-19 3.1E-23 140.8 11.2 168 21-214 5-205 (222)
255 3eow_R Poliovirus receptor; im 99.8 8.5E-19 2.9E-23 140.8 10.9 182 106-309 9-211 (221)
256 3bkj_L WO2 IGG2A FAB fragment 99.8 5E-18 1.7E-22 139.2 15.3 171 10-197 34-237 (252)
257 3uzq_A Anti-dengue MAB 4E11; d 99.8 1.9E-17 6.6E-22 135.8 18.7 196 105-313 10-247 (253)
258 3auv_A SC-DSFV derived from th 99.8 1.1E-17 3.7E-22 139.1 17.2 174 8-197 10-235 (276)
259 3esu_F Antibody 14B7* light ch 99.8 1.4E-17 4.8E-22 136.4 17.5 177 10-196 4-231 (250)
260 1mju_H Immunoglobulin MS6-12; 99.8 5.4E-18 1.9E-22 136.6 14.8 195 104-313 8-220 (227)
261 2ghw_B Anti-SARS SCFV antibody 99.8 1.2E-17 4E-22 136.6 16.9 161 21-197 12-227 (247)
262 1pz5_B Heavy chain of FAB (SYA 99.8 7.3E-18 2.5E-22 135.3 15.3 188 105-305 9-216 (220)
263 3uzq_A Anti-dengue MAB 4E11; d 99.8 9.3E-18 3.2E-22 137.7 16.2 173 12-197 3-229 (253)
264 3juy_B 3B3 single chain varian 99.8 2.1E-17 7.2E-22 135.8 18.0 176 9-197 5-242 (256)
265 3d9a_H Heavy chain of hyhel10 99.8 6.2E-18 2.1E-22 134.6 14.3 182 105-303 9-207 (210)
266 3auv_A SC-DSFV derived from th 99.8 3.1E-17 1E-21 136.3 18.9 189 107-313 23-257 (276)
267 2zg1_A Sialic acid-binding IG- 99.8 5.9E-18 2E-22 135.2 14.0 149 17-197 7-199 (214)
268 2j6e_L IGM, FAB light chain; a 99.8 1.8E-18 6.1E-23 140.3 10.8 183 105-304 28-229 (234)
269 1moe_A Anti-CEA MAB T84.66; an 99.8 2.6E-17 8.9E-22 133.9 17.8 177 11-197 2-220 (240)
270 3bkj_L WO2 IGG2A FAB fragment 99.8 8.4E-18 2.9E-22 137.8 14.6 177 105-301 43-242 (252)
271 1nqb_A Single-chain antibody f 99.8 4.9E-17 1.7E-21 133.4 19.0 167 17-197 7-218 (256)
272 1hnf_A CD2; T lymphocyte adhes 99.8 2.6E-17 8.8E-22 127.1 16.2 144 21-204 9-173 (182)
273 2p1y_A Bispecific alpha/beta T 99.8 1.4E-17 4.8E-22 135.3 15.5 178 106-297 10-222 (238)
274 1dee_B IGM RF 2A2; FAB-IBP com 99.8 5.3E-17 1.8E-21 130.4 18.7 192 104-304 8-221 (223)
275 1ccz_A Protein (CD58); LFA-3, 99.8 1.8E-17 6.2E-22 126.9 15.1 141 21-205 5-164 (171)
276 2j6e_L IGM, FAB light chain; a 99.8 1E-18 3.5E-23 141.7 8.5 173 10-201 20-224 (234)
277 3esu_F Antibody 14B7* light ch 99.8 5.9E-17 2E-21 132.7 19.0 173 107-295 15-231 (250)
278 2dru_A Chimera of CD48 antigen 99.8 9.2E-18 3.1E-22 129.8 13.4 166 106-306 9-177 (180)
279 3o3u_N Maltose-binding peripla 99.8 7.9E-18 2.7E-22 155.1 15.2 165 21-198 376-564 (581)
280 1qok_A MFE-23 recombinant anti 99.8 8.3E-17 2.8E-21 134.1 19.9 199 103-310 33-268 (282)
281 1nfd_E H57 FAB; complex (immun 99.8 1.4E-18 4.6E-23 138.7 8.6 165 17-201 6-201 (212)
282 2rgs_A I, IG gamma-2B heavy ch 99.8 3.5E-18 1.2E-22 136.8 11.0 166 108-300 23-206 (218)
283 1ccz_A Protein (CD58); LFA-3, 99.8 5.5E-18 1.9E-22 129.9 11.6 161 108-307 7-168 (171)
284 1c1e_H Catalytic antibody 1E9 99.8 1.2E-17 4.3E-22 133.8 14.0 164 17-202 7-210 (219)
285 3eow_R Poliovirus receptor; im 99.8 4.2E-19 1.4E-23 142.6 5.2 159 21-201 9-201 (221)
286 3tf7_C 42F3 MUT7 SCFV (42F3 al 99.8 1.1E-17 3.8E-22 137.4 13.7 180 106-299 13-235 (256)
287 3umt_A SCFV heavy chain and li 99.8 5E-17 1.7E-21 133.5 17.5 163 21-197 12-230 (256)
288 3gkz_A Anti-methamphetamine si 99.8 4.6E-17 1.6E-21 133.8 17.3 175 12-197 9-234 (257)
289 3ux9_B SCFV antibody; five hel 99.8 7.7E-17 2.6E-21 132.4 18.5 172 17-197 9-235 (256)
290 1f3r_B FV antibody fragment; I 99.8 9.6E-17 3.3E-21 131.9 18.8 165 21-197 10-231 (257)
291 4dzb_B Vbeta2 (MAIT T cell rec 99.8 1.5E-17 5.2E-22 135.8 13.9 182 106-301 11-222 (246)
292 3gkz_A Anti-methamphetamine si 99.8 8.6E-17 3E-21 132.2 18.5 199 104-313 16-252 (257)
293 2znx_A SCFV; fluorotryptohpan, 99.8 3.2E-17 1.1E-21 133.5 15.7 176 11-197 2-222 (242)
294 1svz_A Immunoglobulin;, single 99.8 9.9E-17 3.4E-21 131.1 18.8 171 11-197 2-228 (247)
295 3juy_B 3B3 single chain varian 99.7 1.1E-16 3.7E-21 131.5 18.9 178 105-298 15-244 (256)
296 4dzb_B Vbeta2 (MAIT T cell rec 99.7 1.6E-17 5.5E-22 135.7 13.7 173 12-197 3-217 (246)
297 2fbj_H IGA-kappa J539 FAB (hea 99.7 6.6E-17 2.3E-21 129.6 16.7 185 104-301 8-212 (220)
298 3tf7_C 42F3 MUT7 SCFV (42F3 al 99.7 8.7E-17 3E-21 132.1 17.7 178 11-201 4-235 (256)
299 3knb_B Obscurin-like protein 1 99.7 6.1E-18 2.1E-22 118.3 9.2 92 220-312 12-107 (107)
300 2dru_A Chimera of CD48 antigen 99.7 6.3E-17 2.1E-21 125.1 15.3 143 20-203 8-172 (180)
301 3pl6_D MBP peptide / T-cell re 99.7 1.9E-17 6.6E-22 137.0 13.2 174 10-197 26-238 (268)
302 1moe_A Anti-CEA MAB T84.66; an 99.7 5.3E-17 1.8E-21 132.1 15.6 171 106-296 11-220 (240)
303 1op3_H FAB 2G12, heavy chain; 99.7 4.8E-17 1.6E-21 130.9 15.1 180 104-301 8-216 (225)
304 1i1c_A IGG2A, IG gamma-2A chai 99.7 3.9E-18 1.3E-22 138.2 8.6 170 10-197 15-208 (239)
305 3omz_A Human vdelta1 gamma del 99.7 8.2E-17 2.8E-21 132.5 16.6 174 10-196 2-230 (259)
306 2vol_A Murine IGG FC; FC, zinc 99.7 1.7E-17 5.7E-22 131.7 11.9 167 108-299 15-197 (207)
307 1dn0_B IGM-kappa cold agglutin 99.7 2.6E-16 8.8E-21 127.1 19.1 194 104-309 8-226 (232)
308 2znx_A SCFV; fluorotryptohpan, 99.7 1.9E-16 6.6E-21 128.8 18.5 173 106-296 11-222 (242)
309 1l6x_A Immunoglobulin gamma-1 99.7 7.9E-18 2.7E-22 133.6 9.9 169 11-197 2-194 (207)
310 4acp_A IG gamma-1 chain C regi 99.7 1.3E-17 4.3E-22 134.8 11.2 202 72-299 1-218 (240)
311 3ux9_B SCFV antibody; five hel 99.7 1.9E-16 6.5E-21 130.1 18.5 180 104-297 10-236 (256)
312 3q5y_A TCR N15 beta; IG, T cel 99.7 3.6E-17 1.2E-21 133.1 13.7 170 11-197 3-210 (240)
313 4ei6_B Vbeta16 XV19 type II na 99.7 8.1E-17 2.8E-21 131.4 15.0 173 11-197 3-216 (245)
314 1qok_A MFE-23 recombinant anti 99.7 2.6E-16 8.9E-21 131.1 18.1 170 14-197 30-253 (282)
315 3mtr_A N-CAM-1, NCAM-1, neural 99.7 2.2E-16 7.5E-21 126.1 16.8 185 96-313 18-212 (215)
316 3bqu_C 3H6 FAB light chain; be 99.7 2.6E-18 8.9E-23 139.2 5.6 176 105-299 32-224 (233)
317 2gjj_A A21 single-chain antibo 99.7 3.4E-16 1.2E-20 129.0 18.4 181 8-197 3-239 (264)
318 3bqu_C 3H6 FAB light chain; be 99.7 6E-18 2E-22 137.1 7.7 171 10-197 23-221 (233)
319 3nfj_J T cell receptor beta ch 99.7 1E-16 3.5E-21 130.8 14.8 173 12-197 3-216 (245)
320 3m8o_H Immunoglobulin A1 heavy 99.7 4.7E-16 1.6E-20 124.8 18.1 185 105-300 9-213 (221)
321 1q9r_B S25-2 FAB (IGG1K) heavy 99.7 2.3E-16 7.9E-21 126.6 15.9 161 21-202 10-213 (222)
322 1x9q_A SCFV, 4M5.3 anti-fluore 99.7 2.4E-16 8.1E-21 130.4 16.2 183 8-197 13-254 (268)
323 3bae_H WO2 IGG2A FAB fragment 99.7 2.2E-16 7.4E-21 127.3 15.4 184 105-306 9-222 (228)
324 3pl6_D MBP peptide / T-cell re 99.7 1.3E-16 4.3E-21 132.1 14.4 180 106-300 36-242 (268)
325 1l6x_A Immunoglobulin gamma-1 99.7 3.4E-17 1.2E-21 129.9 10.5 168 109-299 16-197 (207)
326 1mq8_A ICAM-1, intercellular a 99.7 5.6E-17 1.9E-21 134.0 11.9 203 106-371 9-226 (291)
327 2xqy_G A13-D6.3 monoclonal ant 99.7 2.2E-16 7.4E-21 129.7 15.3 189 104-304 14-219 (261)
328 1gsm_A Madcam-1, mucosal addre 99.7 6.7E-16 2.3E-20 120.5 17.2 153 107-300 18-195 (210)
329 1svz_A Immunoglobulin;, single 99.7 7.3E-16 2.5E-20 125.9 18.4 171 106-296 11-228 (247)
330 3fku_X Neutralizing antibody F 99.7 1.9E-16 6.5E-21 131.7 15.1 173 12-197 3-233 (280)
331 3d9a_H Heavy chain of hyhel10 99.7 1.5E-16 5.3E-21 126.5 13.9 163 17-202 7-204 (210)
332 3qib_D 2B4 beta chain; IG doma 99.7 1.7E-16 5.9E-21 131.4 14.4 174 10-197 27-241 (270)
333 3nl4_H Antigen binding fragmen 99.7 1.2E-16 4E-21 127.7 12.8 191 104-308 7-212 (215)
334 3nfj_J T cell receptor beta ch 99.7 2E-16 6.7E-21 129.1 14.3 183 106-301 11-221 (245)
335 2w59_A IGY FCU3-4; immunoglobu 99.7 1.2E-17 4.1E-22 134.9 6.9 176 10-197 12-214 (231)
336 3m8o_H Immunoglobulin A1 heavy 99.7 3.1E-16 1E-20 125.8 15.2 159 21-197 10-209 (221)
337 2fbj_H IGA-kappa J539 FAB (hea 99.7 2.7E-16 9.1E-21 126.0 14.8 162 21-201 10-210 (220)
338 3liz_H 4C3 monoclonal antibody 99.7 1.8E-16 6E-21 129.9 14.0 193 104-309 8-219 (253)
339 2gjj_A A21 single-chain antibo 99.7 4.2E-16 1.5E-20 128.4 16.2 172 106-296 15-239 (264)
340 3nl4_H Antigen binding fragmen 99.7 5.3E-16 1.8E-20 123.9 16.1 121 17-138 6-163 (215)
341 2gki_A Nuclease; anti-DNA anti 99.7 5.7E-16 1.9E-20 129.6 16.8 203 104-313 30-275 (291)
342 1i1c_A IGG2A, IG gamma-2A chai 99.7 8.4E-17 2.9E-21 130.3 11.3 168 108-300 29-212 (239)
343 1dee_B IGM RF 2A2; FAB-IBP com 99.7 6E-16 2.1E-20 124.2 15.9 163 21-202 10-217 (223)
344 3q5y_A TCR N15 beta; IG, T cel 99.7 5.6E-16 1.9E-20 126.0 15.7 181 106-300 12-214 (240)
345 1pz5_B Heavy chain of FAB (SYA 99.7 7.4E-16 2.5E-20 123.5 15.5 165 17-203 7-212 (220)
346 3mtr_A N-CAM-1, NCAM-1, neural 99.7 7.4E-16 2.5E-20 123.0 15.3 174 10-214 19-208 (215)
347 3knb_A Titin; IG-like, titin, 99.7 7.5E-17 2.6E-21 111.4 8.2 90 220-310 4-99 (100)
348 3omz_A Human vdelta1 gamma del 99.7 5E-16 1.7E-20 127.8 14.5 180 106-296 12-231 (259)
349 4ei6_B Vbeta16 XV19 type II na 99.7 7.9E-16 2.7E-20 125.5 15.5 180 106-301 12-221 (245)
350 3fku_X Neutralizing antibody F 99.7 1.5E-15 5.3E-20 126.2 17.1 192 104-312 8-252 (280)
351 1x9q_A SCFV, 4M5.3 anti-fluore 99.7 1.1E-15 3.6E-20 126.5 15.7 173 106-296 25-254 (268)
352 2wbj_D OB TCR; transmembrane, 99.7 4.2E-16 1.5E-20 129.6 13.3 175 10-197 24-242 (279)
353 2gki_A Nuclease; anti-DNA anti 99.7 3.2E-15 1.1E-19 125.0 18.3 169 16-197 28-257 (291)
354 2w59_A IGY FCU3-4; immunoglobu 99.7 1.5E-16 5.3E-21 128.3 9.8 168 108-300 25-218 (231)
355 3bn9_D E2 FAB heavy chain; ant 99.7 5E-16 1.7E-20 127.0 12.9 191 104-304 8-224 (257)
356 3to4_D NKT vbeta2 (mouse varia 99.7 2.4E-15 8.2E-20 123.2 16.8 184 106-299 11-219 (253)
357 1hxm_B Gamma-delta T-cell rece 99.7 1.3E-15 4.6E-20 123.8 14.7 191 106-308 11-227 (242)
358 1dn0_B IGM-kappa cold agglutin 99.7 4.6E-15 1.6E-19 119.7 17.8 167 21-206 10-221 (232)
359 1mju_H Immunoglobulin MS6-12; 99.7 1.4E-15 4.9E-20 122.3 14.4 170 21-214 10-216 (227)
360 1c5d_H Monoclonal antibody aga 99.7 2.3E-15 7.8E-20 120.1 15.3 181 105-304 9-210 (215)
361 1op3_H FAB 2G12, heavy chain; 99.7 1.7E-15 5.7E-20 121.8 14.6 161 17-197 7-211 (225)
362 2cqv_A MLCK, myosin light chai 99.7 8.5E-16 2.9E-20 109.3 11.2 93 220-313 6-102 (114)
363 1oga_E TRBC1, T-cell receptor 99.7 9.3E-16 3.2E-20 125.6 13.0 173 11-197 4-215 (252)
364 3tv3_H PGT128 heavy chain, IG 99.7 1E-15 3.4E-20 124.3 13.1 198 104-308 8-235 (239)
365 3to4_D NKT vbeta2 (mouse varia 99.7 1.5E-15 5.1E-20 124.4 13.5 170 14-197 5-216 (253)
366 3bae_H WO2 IGG2A FAB fragment 99.7 2.5E-15 8.6E-20 121.0 14.5 163 17-202 7-216 (228)
367 2aty_A Complement receptor chi 99.7 1.6E-15 5.4E-20 131.5 14.0 169 11-197 167-359 (376)
368 4acp_A IG gamma-1 chain C regi 99.6 4E-16 1.4E-20 126.0 9.4 171 9-197 21-215 (240)
369 3qhz_H Human monoclonal antibo 99.6 3.2E-15 1.1E-19 120.8 14.8 187 104-309 8-228 (232)
370 1bec_A 14.3.D T cell antigen r 99.6 6.1E-16 2.1E-20 125.5 10.6 168 13-197 2-209 (238)
371 3n9g_H FAB fragment of MAB CR4 99.6 8.1E-15 2.8E-19 118.2 17.1 196 104-310 8-225 (230)
372 3liz_H 4C3 monoclonal antibody 99.6 3.9E-15 1.3E-19 121.9 15.4 165 21-206 10-214 (253)
373 2v5y_A Receptor-type tyrosine- 99.6 1.6E-14 5.6E-19 136.4 21.0 239 26-301 91-345 (731)
374 2wbj_D OB TCR; transmembrane, 99.6 1.6E-15 5.5E-20 126.1 12.6 183 106-301 34-247 (279)
375 3knb_B Obscurin-like protein 1 99.6 1.3E-15 4.6E-20 106.4 10.0 84 9-94 12-104 (107)
376 1iam_A ICAM-1, CD54, intercell 99.6 2E-14 6.7E-19 109.7 17.0 157 13-198 2-165 (185)
377 3u2s_H PG9 heavy chain; greek 99.6 7.7E-15 2.6E-19 119.5 15.0 196 104-309 7-237 (248)
378 1hxm_B Gamma-delta T-cell rece 99.6 4.1E-15 1.4E-19 120.9 13.0 168 13-202 4-219 (242)
379 3o3u_N Maltose-binding peripla 99.6 1.9E-15 6.6E-20 139.2 12.3 172 106-300 376-567 (581)
380 2edj_A Roundabout homolog 2; K 99.6 3.3E-15 1.1E-19 103.5 10.4 92 220-312 7-100 (100)
381 3kvq_A Vascular endothelial gr 99.6 1.5E-15 5E-20 107.0 8.7 93 220-313 9-103 (108)
382 1g1c_A Immunoglobulin-like dom 99.6 2.2E-15 7.5E-20 104.2 9.4 90 220-310 4-98 (99)
383 3iu4_H CHP3 FAB heavy chain; a 99.6 6.3E-15 2.2E-19 121.1 13.7 193 104-308 8-222 (263)
384 2ckn_A Basic fibroblast growth 99.6 2.9E-15 1E-19 102.6 9.8 87 220-308 8-94 (95)
385 3qp3_A Titin; I-SET IG-like, s 99.6 2.9E-15 9.8E-20 104.4 9.7 92 220-312 7-102 (103)
386 1c5d_H Monoclonal antibody aga 99.6 4E-14 1.4E-18 112.9 17.3 120 17-137 7-164 (215)
387 3knb_A Titin; IG-like, titin, 99.6 2E-15 6.9E-20 104.2 8.4 83 10-94 5-98 (100)
388 3tv3_H PGT128 heavy chain, IG 99.6 1.8E-14 6.2E-19 116.8 15.0 164 21-204 10-229 (239)
389 1wit_A Twitchin 18TH IGSF modu 99.6 2.1E-15 7E-20 103.0 7.9 88 221-309 2-93 (93)
390 3irg_B Obscurin-like protein 1 99.6 4.8E-15 1.6E-19 104.1 10.0 92 220-312 12-107 (107)
391 2xqy_G A13-D6.3 monoclonal ant 99.6 1.1E-14 3.8E-19 119.5 13.5 160 17-197 13-211 (261)
392 1oga_E TRBC1, T-cell receptor 99.6 6.9E-15 2.4E-19 120.4 11.7 182 106-301 13-220 (252)
393 1ypz_E T cell receptor delta, 99.6 4.7E-14 1.6E-18 111.6 16.0 122 13-140 4-161 (207)
394 1bec_A 14.3.D T cell antigen r 99.6 7.8E-15 2.7E-19 119.0 11.7 180 106-300 9-213 (238)
395 3shs_A HOC head outer capsid p 99.6 2.5E-13 8.5E-18 106.9 19.5 155 107-308 13-181 (304)
396 3qhz_H Human monoclonal antibo 99.6 2.2E-14 7.4E-19 115.9 14.3 166 21-206 10-223 (232)
397 2kdg_A Myotilin; immonoglobuli 99.6 4.7E-15 1.6E-19 102.7 8.8 92 220-312 4-100 (100)
398 2kkq_A Myotilin; unknown funct 99.6 8.7E-15 3E-19 104.2 10.3 93 220-313 14-112 (116)
399 1ow0_A IG alpha-1 chain C regi 99.6 3E-16 1E-20 125.1 2.8 171 10-197 3-197 (214)
400 2yr3_A Myosin light chain kina 99.6 6E-15 2E-19 102.0 8.9 89 220-309 10-99 (99)
401 2eo9_A Roundabout homolog 1; b 99.6 7.6E-15 2.6E-19 105.0 9.7 93 220-313 7-101 (118)
402 1ypz_F T-cell receptor gamma c 99.6 5.1E-14 1.7E-18 113.4 15.7 182 106-301 11-218 (230)
403 3sob_H Antibody heavy chain, l 99.6 3.8E-14 1.3E-18 116.2 15.2 193 105-309 32-250 (256)
404 1wwb_X Protein (brain derived 99.6 6.6E-15 2.3E-19 102.3 9.0 80 234-313 13-101 (103)
405 3bn3_B ICAM-5, intercellular a 99.6 6.1E-14 2.1E-18 107.8 15.1 166 10-198 2-173 (196)
406 3mlr_H Human monoclonal anti-H 99.6 7.4E-14 2.5E-18 112.2 16.4 191 103-305 7-221 (226)
407 2aty_A Complement receptor chi 99.6 1.4E-14 4.9E-19 125.5 12.9 169 108-299 180-362 (376)
408 3puc_A Titin; I-SET IG-like do 99.6 1.6E-14 5.5E-19 99.8 10.4 90 220-310 5-98 (99)
409 2dm2_A Palladin; beta-sandwich 99.6 8.8E-15 3E-19 103.3 9.2 93 220-313 7-105 (110)
410 3u2s_H PG9 heavy chain; greek 99.6 6.1E-14 2.1E-18 114.2 15.4 167 16-203 5-229 (248)
411 2e7c_A Myosin-binding protein 99.6 1.4E-14 4.9E-19 103.5 10.3 91 220-312 20-117 (118)
412 1fhg_A Telokin; immunoglobulin 99.6 1.3E-14 4.4E-19 109.0 10.4 93 220-313 40-137 (154)
413 2yuz_A Myosin-binding protein 99.6 1.1E-14 3.7E-19 100.4 9.0 89 220-313 6-98 (100)
414 1u2h_A APEG-1, aortic preferen 99.6 1.9E-14 6.4E-19 99.5 10.3 90 220-310 4-98 (99)
415 3bn9_D E2 FAB heavy chain; ant 99.6 1.6E-14 5.5E-19 118.0 11.3 158 21-197 10-216 (257)
416 1he7_A High affinity nerve gro 99.6 1.2E-14 4E-19 103.1 8.9 79 235-313 13-102 (126)
417 1nct_A Titin; cell adhesion, g 99.6 7.5E-15 2.6E-19 102.6 7.6 89 220-309 13-105 (106)
418 2xot_A Amphoterin-induced prot 99.6 1.2E-14 4E-19 125.4 10.1 99 234-369 258-360 (361)
419 3n9g_H FAB fragment of MAB CR4 99.6 1.3E-13 4.6E-18 111.0 15.3 171 21-214 10-224 (230)
420 3irg_A Titin; IG-like, titin, 99.5 3.1E-14 1.1E-18 98.6 9.8 89 220-309 4-98 (100)
421 1ypz_F T-cell receptor gamma c 99.5 2.9E-14 9.9E-19 114.9 10.8 164 13-197 4-213 (230)
422 2cr3_A Basic fibroblast growth 99.5 2.8E-14 9.4E-19 98.5 9.1 79 234-313 15-93 (99)
423 2dm3_A KIAA0992 protein, palla 99.5 9.7E-15 3.3E-19 103.1 6.9 93 220-313 8-105 (110)
424 2bk8_A Connectin, M1, titin he 99.5 7E-14 2.4E-18 96.1 11.0 78 234-311 13-95 (97)
425 2v5y_A Receptor-type tyrosine- 99.5 1.5E-13 5.1E-18 129.9 16.1 165 111-313 91-263 (731)
426 3iu4_H CHP3 FAB heavy chain; a 99.5 6.3E-14 2.1E-18 115.1 11.3 161 21-201 10-213 (263)
427 3kvq_A Vascular endothelial gr 99.5 2.1E-14 7.2E-19 101.0 7.4 92 2-95 2-100 (108)
428 3cx2_A Myosin-binding protein 99.5 1.1E-13 3.6E-18 97.2 10.8 88 221-309 4-107 (108)
429 4hwu_A Fibroblast growth facto 99.5 7.5E-14 2.6E-18 95.5 9.8 78 234-313 13-90 (95)
430 1ow0_A IG alpha-1 chain C regi 99.5 1.5E-15 5.3E-20 121.0 1.3 167 108-299 16-200 (214)
431 2lu7_A Obscurin-like protein 1 99.5 5.5E-14 1.9E-18 93.1 8.5 73 234-311 8-84 (84)
432 2dav_A SLOW MYBP-C, myosin-bin 99.5 7E-14 2.4E-18 99.2 9.3 88 222-310 8-111 (126)
433 1wwc_A Protein (NT-3 growth fa 99.5 7E-14 2.4E-18 99.9 9.3 90 220-313 7-104 (118)
434 1waa_A Titin; metal binding pr 99.5 1.6E-13 5.5E-18 93.0 10.4 85 220-310 4-92 (93)
435 1g1c_A Immunoglobulin-like dom 99.5 1.3E-13 4.4E-18 95.2 9.9 84 9-94 4-97 (99)
436 2kdg_A Myotilin; immonoglobuli 99.5 1.1E-13 3.7E-18 95.8 9.4 84 9-94 4-97 (100)
437 3sob_H Antibody heavy chain, l 99.5 1E-12 3.6E-17 107.6 16.9 166 21-206 33-245 (256)
438 3f8u_B Tapasin; endoplasmic re 99.5 3.4E-13 1.2E-17 114.6 14.1 173 10-197 158-387 (401)
439 3f8u_B Tapasin; endoplasmic re 99.5 6.8E-12 2.3E-16 106.7 22.0 181 102-297 164-388 (401)
440 3qp3_A Titin; I-SET IG-like, s 99.5 8.1E-14 2.8E-18 97.0 8.6 86 7-94 5-99 (103)
441 2cqv_A MLCK, myosin light chai 99.5 7.5E-14 2.6E-18 99.1 8.5 85 9-95 6-99 (114)
442 2cry_A KIN of IRRE-like protei 99.5 5.5E-15 1.9E-19 106.4 2.4 97 210-313 8-116 (122)
443 3mlr_H Human monoclonal anti-H 99.5 6.3E-13 2.1E-17 106.7 14.7 158 21-197 10-212 (226)
444 1u2h_A APEG-1, aortic preferen 99.5 1.7E-13 5.8E-18 94.6 9.6 84 9-94 4-97 (99)
445 2edj_A Roundabout homolog 2; K 99.5 1.1E-13 3.9E-18 95.7 8.6 85 8-94 6-97 (100)
446 1ypz_E T cell receptor delta, 99.5 6.5E-13 2.2E-17 105.0 14.0 168 106-299 11-198 (207)
447 2yuz_A Myosin-binding protein 99.5 1.2E-13 4.1E-18 95.2 8.6 80 9-94 6-94 (100)
448 3bfo_A Mucosa-associated lymph 99.5 1.8E-13 6.3E-18 92.7 9.4 82 223-310 5-87 (91)
449 3bfo_A Mucosa-associated lymph 99.5 1.6E-13 5.3E-18 93.1 9.0 84 9-94 2-86 (91)
450 2edn_A Myosin-binding protein 99.5 6.1E-14 2.1E-18 98.4 7.1 90 221-311 12-117 (118)
451 1hxm_A Gamma-delta T-cell rece 99.5 1.9E-12 6.6E-17 103.7 16.8 158 13-197 4-196 (229)
452 1wit_A Twitchin 18TH IGSF modu 99.5 5.3E-14 1.8E-18 95.9 6.6 82 10-93 2-92 (93)
453 2yr3_A Myosin light chain kina 99.5 5.8E-14 2E-18 96.9 6.9 85 7-93 8-98 (99)
454 1iam_A ICAM-1, CD54, intercell 99.5 3E-12 1E-16 97.6 16.6 154 106-300 9-168 (185)
455 1gxe_A Myosin binding protein 99.5 8.9E-14 3E-18 101.6 7.7 80 229-309 26-138 (139)
456 3puc_A Titin; I-SET IG-like do 99.5 2.8E-13 9.5E-18 93.5 9.8 85 8-94 4-97 (99)
457 3irg_B Obscurin-like protein 1 99.5 2.7E-13 9.2E-18 95.1 9.8 85 8-94 11-104 (107)
458 3caf_A Fibroblast growth facto 99.5 1.2E-13 4.1E-18 95.6 7.7 75 234-308 20-99 (100)
459 3u1s_H FAB PGT145 heavy chain; 99.5 1.2E-12 4.2E-17 107.8 15.1 194 104-308 31-263 (267)
460 1gl4_B Basement membrane-speci 99.5 6.6E-13 2.2E-17 91.4 11.3 75 234-309 22-97 (98)
461 2edh_A Obscurin; structural ge 99.5 7.9E-13 2.7E-17 93.6 11.9 93 210-313 12-108 (113)
462 2dav_A SLOW MYBP-C, myosin-bin 99.5 2.3E-13 7.8E-18 96.6 8.7 85 10-95 7-111 (126)
463 2kkq_A Myotilin; unknown funct 99.5 3E-13 1E-17 96.2 9.0 85 8-94 13-108 (116)
464 3s35_X Vascular endothelial gr 99.5 4.1E-13 1.4E-17 96.6 9.8 80 234-313 20-113 (122)
465 3m45_A Cell adhesion molecule 99.5 5.6E-13 1.9E-17 93.6 10.2 91 220-312 5-108 (108)
466 2edf_A Obscurin; beta-sandwich 99.5 3.8E-13 1.3E-17 93.5 9.2 88 220-313 7-98 (103)
467 1x44_A Myosin-binding protein 99.5 5.3E-13 1.8E-17 92.8 9.8 85 223-313 9-99 (103)
468 1gl4_B Basement membrane-speci 99.5 2.7E-13 9.2E-18 93.3 8.3 87 8-94 7-97 (98)
469 2ckn_A Basic fibroblast growth 99.4 1.8E-13 6.2E-18 93.6 6.9 82 9-93 8-94 (95)
470 2cr6_A KIAA1556 protein, obscu 99.4 3.3E-13 1.1E-17 95.8 8.4 95 210-313 6-105 (115)
471 1zxq_A ICAM-2, intercellular a 99.4 1.7E-11 5.7E-16 93.3 18.1 127 10-140 2-134 (192)
472 2yuv_A Myosin-binding protein 99.4 1.5E-12 5.1E-17 89.9 11.3 89 220-313 6-98 (100)
473 1fhg_A Telokin; immunoglobulin 99.4 5.4E-13 1.8E-17 100.1 9.5 92 7-101 38-139 (154)
474 2eo9_A Roundabout homolog 1; b 99.4 1.6E-13 5.6E-18 98.0 6.3 85 9-95 7-98 (118)
475 2bk8_A Connectin, M1, titin he 99.4 1.9E-12 6.4E-17 88.9 11.4 80 14-94 5-93 (97)
476 3cx2_A Myosin-binding protein 99.4 6.7E-13 2.3E-17 93.1 9.2 84 9-94 3-107 (108)
477 1waa_A Titin; metal binding pr 99.4 1.8E-12 6.3E-17 87.8 11.0 79 9-94 4-91 (93)
478 2e7c_A Myosin-binding protein 99.4 7.6E-13 2.6E-17 94.5 9.5 85 9-94 20-114 (118)
479 2lu7_A Obscurin-like protein 1 99.4 1E-12 3.5E-17 87.0 9.0 68 21-94 6-82 (84)
480 2dm2_A Palladin; beta-sandwich 99.4 3.9E-13 1.3E-17 94.7 7.5 85 8-94 6-101 (110)
481 3irg_A Titin; IG-like, titin, 99.4 6.2E-13 2.1E-17 91.9 8.4 83 10-94 5-98 (100)
482 1nct_A Titin; cell adhesion, g 99.4 1.6E-13 5.4E-18 95.8 5.2 84 9-94 13-105 (106)
483 2lvc_A Obscurin-like protein 1 99.4 9.8E-13 3.4E-17 88.5 8.8 70 234-308 18-91 (91)
484 2ens_A Advanced glycosylation 99.4 4.1E-13 1.4E-17 92.0 7.0 85 220-310 9-95 (96)
485 2eny_A Obscurin; beta-sandwich 99.4 7E-13 2.4E-17 92.1 8.1 88 221-313 8-100 (104)
486 3bn3_B ICAM-5, intercellular a 99.4 8.7E-12 3E-16 95.8 14.8 154 106-299 12-175 (196)
487 2e6p_A Obscurin-like protein 1 99.4 7.9E-13 2.7E-17 92.1 8.2 87 221-313 7-100 (104)
488 2edn_A Myosin-binding protein 99.4 3.3E-13 1.1E-17 94.7 6.0 84 10-94 12-115 (118)
489 2ens_A Advanced glycosylation 99.4 2.8E-13 9.4E-18 92.9 5.5 84 9-94 9-94 (96)
490 3s35_X Vascular endothelial gr 99.4 7.5E-13 2.6E-17 95.2 7.7 92 12-104 9-118 (122)
491 2edk_A Myosin-binding protein 99.4 4E-13 1.4E-17 93.0 5.7 87 220-312 7-101 (101)
492 2k1m_A Myosin-binding protein 99.4 3.2E-12 1.1E-16 87.3 10.1 82 222-309 9-94 (95)
493 2e7b_A Obscurin; IG-like domai 99.4 1.5E-12 5.2E-17 90.4 8.6 88 220-313 7-98 (103)
494 2dlt_A Myosin binding protein 99.4 9E-13 3.1E-17 92.1 7.5 86 220-309 7-96 (106)
495 3caf_A Fibroblast growth facto 99.4 7.4E-13 2.5E-17 91.5 6.9 83 10-93 4-99 (100)
496 2dku_A KIAA1556 protein; beta- 99.4 4.6E-12 1.6E-16 88.0 10.7 88 220-313 7-98 (103)
497 2dm3_A KIAA0992 protein, palla 99.4 2.6E-13 8.7E-18 95.7 4.2 84 9-94 8-101 (110)
498 3so5_A LIG-3, leucine-rich rep 99.4 2.1E-12 7E-17 91.3 8.9 88 5-93 5-111 (112)
499 2e6q_A Obscurin-like protein 1 99.4 1.1E-11 3.7E-16 86.4 12.2 88 220-313 7-108 (112)
500 3rbg_A Cytotoxic and regulator 99.4 4E-12 1.4E-16 91.5 10.2 83 229-313 9-104 (124)
No 1
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}
Probab=100.00 E-value=3.9e-43 Score=322.56 Aligned_cols=326 Identities=22% Similarity=0.389 Sum_probs=257.3
Q ss_pred cccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC---------CeeEEEEccCCcCCCeEEEEEE
Q psy14542 8 KSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN---------SDEVLVLDRVQREDAGMYQCHV 78 (371)
Q Consensus 8 ~~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~---------~~~~l~i~~~~~~d~G~Y~C~~ 78 (371)
..+|.+...+.. +.+.+|+.++|.|.+ .+.|.+.+.|+|++..+... ...+|.|.+++.+|+|.|+|.+
T Consensus 3 ~~pP~f~~~~~~-~~v~~G~~v~L~C~~-~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a 80 (570)
T 3b43_A 3 MEPPYFIEPLEH-VEAAIGEPITLQCKV-DGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASLVINKVDHSDVGEYTCKA 80 (570)
T ss_dssp CCCCEEEECCCC-EEECTTSCEEEEEEE-ESSSSCEEEEECSSSBCCCCSSEEEECCTTEEEEEESSCCGGGCEEEEEEE
T ss_pred CCCCcceEECCc-eEEcCCCEEEEEEEE-ccCCCCEEEEEECCEEccCCCCEEEEEECCEEEEEEccCChhhCEEEEEEE
Confidence 345666544444 899999999999954 57788999999998776433 4578999999999999999999
Q ss_pred EcCCCCeEEEEEEEEec--ceeeEecCCce-eeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCC---------eeEE
Q psy14542 79 SADDDSAQMSAQVILGG--ELVEIASSNQV-VVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNS---------DEVL 146 (371)
Q Consensus 79 ~~~~~~~~~~~~l~v~~--~~~~~~~~~~~-~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~---------~~~~ 146 (371)
.|..|.......|.|.. .+|.+...... ....|+.+.|.|.+.+.++ +.++|+++|..+.... ...|
T Consensus 81 ~N~~g~~~~~~~l~v~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~p~-~~v~W~k~g~~l~~~~~~~~~~~~~~~~L 159 (570)
T 3b43_A 81 ENSVGAVASSAVLVIKERKLPPSFARKLKDVHETLGFPVAFECRINGSEP-LQVSWYKDGELLKDDANLQTSFIHNVATL 159 (570)
T ss_dssp EETTEEEEEEEEEEECCCCCCCEESSCCCCEEEETTSCEEEEEEEESSSS-CEEEEEETTEECCCCSSEEEEEETTEEEE
T ss_pred EeCCceEEEEEEEEECCCCCCCcccccCCCeEecCCCeEEEEEEEccCCC-CEEEEEECCEECcCCCCEEEEEECCEEEE
Confidence 99888777777777753 34555544433 3378999999999999887 8999999998876432 2468
Q ss_pred EEcccCcCCCeeEEEEEeCC------------------------------------------------------------
Q psy14542 147 VLDRVQREDAGMYQCHIEDG------------------------------------------------------------ 166 (371)
Q Consensus 147 ~~~~~~~~~~g~y~~~~~~~------------------------------------------------------------ 166 (371)
.+.++..+|.|.|+|.+.+.
T Consensus 160 ~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~pp~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~i~W~k~g~~i~ 239 (570)
T 3b43_A 160 QILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEHEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIR 239 (570)
T ss_dssp EESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCCCCEEEECCCCBCCBSBSCEEEEEEEESSSCCEEEEEETTEECC
T ss_pred EECcCChHHCEEEEEEEEeCCcEEEEEEEEEEcCCCCCCccccCCceeEecCCCeEEEEEEEEECCCCEEEEEECCEECc
Confidence 88889999999999766521
Q ss_pred ---ceeE--e-ccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeE
Q psy14542 167 ---KYHM--L-SSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESV 240 (371)
Q Consensus 167 ---~~~~--~-~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~ 240 (371)
++.+ . ....|.|.++..+| +|.|+|.+.|. .|....+. .|.|. .+|.+.........+..|+.+
T Consensus 240 ~~~~~~~~~~~~~~~L~i~~v~~~D-~G~Y~C~a~N~-~g~~~~~~---~l~V~-----~~p~~~~~~~~~~~v~~g~~~ 309 (570)
T 3b43_A 240 PGGNYKMTLVENTATLTVLKVTKGD-AGQYTCYASNV-AGKDSCSA---QLGVQ-----EPPRFIKKLEPSRIVKQDEHT 309 (570)
T ss_dssp TTSSEEEEEETTEEEEEESSBCGGG-CEEEEEEEEET-TEEEEEEE---EECCB-----CCCEEEECCCSBCCEESSCEE
T ss_pred CCCcEEEEEECCEEEEEEcccCccc-CEEEEEEEECC-CCcEEEEE---EEEee-----cCCcccccCCCccEEcCCCcE
Confidence 0000 0 12358888899999 99999999998 77776666 78887 666665544333237899999
Q ss_pred EEEEEeecCCCCceEEEeCCcccccCCceEE----ecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEecCccccc
Q psy14542 241 ILPCSAQGNPLPTIKWYKQDSPVEESDRIQR----IGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHML 316 (371)
Q Consensus 241 ~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~----~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~~~ 316 (371)
.|.|.+.|.|.+.+.|++++..+..+.++.. ..+.|.|.++..+|+|.|+|.|.|..|....++.|.|..+|.
T Consensus 310 ~l~C~~~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~P~--- 386 (570)
T 3b43_A 310 RYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPV--- 386 (570)
T ss_dssp EEEEEEESSSSCEEEEEETTEECCCSSSEEEEEETTEEEEEEESCCGGGCEEEEEEEEBTTBCCEEEEEECEECCCE---
T ss_pred EEEEEEeeCCCCEEEEeECCEECCCCCcEEEEEECCEEEEEECCCCcccCEEEEEEEEeCCCEEEEEEEEEecCCCe---
Confidence 9999999999999999999999887766542 235799999999999999999999999999999999998887
Q ss_pred ccceEEEEeeeeccccccccccccccceeeeeecCCeEEEeeeeecCCCCccccC
Q psy14542 317 SSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKYR 371 (371)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~ 371 (371)
+. ..|. ...+.+|+.+.|.|.+.|.|+|.|+|+
T Consensus 387 ------~~--~~~~--------------~~~~~~G~~v~l~C~~~g~P~p~v~W~ 419 (570)
T 3b43_A 387 ------FR--KKPH--------------PVETLKGADVHLECELQGTPPFQVSWH 419 (570)
T ss_dssp ------EC--SCCC--------------CEEECTTCCEEEEEEEESSSSCCCEEE
T ss_pred ------ee--cCCC--------------ceeecCCCEEEEEEEEecCCCCEEEEE
Confidence 44 2221 226779999999999999999999995
No 2
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}
Probab=100.00 E-value=1.4e-42 Score=318.81 Aligned_cols=302 Identities=20% Similarity=0.307 Sum_probs=248.0
Q ss_pred ccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC---------CeeEEEEccCCcCCCeEEEEEEE
Q psy14542 9 SSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN---------SDEVLVLDRVQREDAGMYQCHVS 79 (371)
Q Consensus 9 ~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~---------~~~~l~i~~~~~~d~G~Y~C~~~ 79 (371)
.+|.+...|.. ..+.+|++++|.|.+ .+.|.+.+.|+|++..+... ....|.|.+++.+|+|.|+|.+.
T Consensus 196 ~pp~~~~~p~~-~~v~~G~~~~l~C~~-~g~p~p~i~W~k~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~ 273 (570)
T 3b43_A 196 VPPFFDLKPVS-VDLALGESGTFKCHV-TGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYAS 273 (570)
T ss_dssp CCCEEEECCCC-BCCBSBSCEEEEEEE-ESSSCCEEEEEETTEECCTTSSEEEEEETTEEEEEESSBCGGGCEEEEEEEE
T ss_pred CCCccccCCce-eEecCCCeEEEEEEE-EECCCCEEEEEECCEECcCCCcEEEEEECCEEEEEEcccCcccCEEEEEEEE
Confidence 45677777777 788999999999965 56678899999999887543 35789999999999999999999
Q ss_pred cCCCCeEEEEEEEEecceeeEecCC--ceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCe
Q psy14542 80 ADDDSAQMSAQVILGGELVEIASSN--QVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAG 157 (371)
Q Consensus 80 ~~~~~~~~~~~l~v~~~~~~~~~~~--~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g 157 (371)
|..|.....+.|.|. .+|.+.... ...+.+|+.+.|.|.+.+.|. +.+.|++++..+.....+.+...
T Consensus 274 N~~g~~~~~~~l~V~-~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~P~-p~v~W~k~~~~l~~~~~~~~~~~-------- 343 (570)
T 3b43_A 274 NVAGKDSCSAQLGVQ-EPPRFIKKLEPSRIVKQDEHTRYECKIGGSPE-IKVLWYKDETEIQESSKFRMSFV-------- 343 (570)
T ss_dssp ETTEEEEEEEEECCB-CCCEEEECCCSBCCEESSCEEEEEEEEESSSS-CEEEEEETTEECCCSSSEEEEEE--------
T ss_pred CCCCcEEEEEEEEee-cCCcccccCCCccEEcCCCcEEEEEEEeeCCC-CEEEEeECCEECCCCCcEEEEEE--------
Confidence 998888888999988 555544332 233589999999999999887 89999999998876543221110
Q ss_pred eEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecC
Q psy14542 158 MYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKD 237 (371)
Q Consensus 158 ~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g 237 (371)
.....|.|.++..+| +|.|+|.+.|. .|....+. .|.|. .+|.+...+.... +..|
T Consensus 344 -------------~~~~~L~i~~v~~~D-~G~Y~C~a~N~-~g~~~~~~---~l~V~-----~~P~~~~~~~~~~-~~~G 399 (570)
T 3b43_A 344 -------------ESVAVLEMYNLSVED-SGDYTCEAHNA-AGSASSST---SLKVK-----EPPVFRKKPHPVE-TLKG 399 (570)
T ss_dssp -------------TTEEEEEEESCCGGG-CEEEEEEEEBT-TBCCEEEE---EECEE-----CCCEECSCCCCEE-ECTT
T ss_pred -------------CCEEEEEECCCCccc-CEEEEEEEEeC-CCEEEEEE---EEEec-----CCCeeecCCCcee-ecCC
Confidence 012579999999999 99999999999 77777666 88888 6777777766666 8899
Q ss_pred CeEEEEEEeecCCCCceEEEeCCcccccCCceEEe--c--ceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEecCcc
Q psy14542 238 ESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI--G--SSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKY 313 (371)
Q Consensus 238 ~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~--~--~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~ 313 (371)
+.+.|.|.+.|.|.|.+.|++++..+..+.++... + .+|.|.++..+|+|.|+|.|.|..|.....+.|.|..+|.
T Consensus 400 ~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~~P~ 479 (570)
T 3b43_A 400 ADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLKAPPR 479 (570)
T ss_dssp CCEEEEEEEESSSSCCCEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEECCCCE
T ss_pred CEEEEEEEEecCCCCEEEEEECCEECcCCCCEEEEEcCCEEEEEECCCChhhCEEEEEEEEECCCeEEEEEEEEeccCCc
Confidence 99999999999999999999999998877766532 2 4799999999999999999999999999999999999888
Q ss_pred cccccceEEEEeeeeccccccccccccccceeeeeecCCeEEEeeeeecCCCCccccC
Q psy14542 314 HMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKYR 371 (371)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~ 371 (371)
+. ..+.. ..+.+|+.+.|.|.+.|.|+|.|+|+
T Consensus 480 ---------~~--~~~~~--------------~~~~~g~~~~l~c~~~g~p~~~v~W~ 512 (570)
T 3b43_A 480 ---------FV--KKLSD--------------ISTVVGEEVQLQATIEGAEPISVAWF 512 (570)
T ss_dssp ---------EE--ECCCC--------------BCCBTTCCEEEEEEEESCSSCCCEEE
T ss_pred ---------cc--ccCCC--------------ceecCCCeEEEEEEEecCCCCEEEEE
Confidence 55 22111 26779999999999999999999996
No 3
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Probab=100.00 E-value=9e-39 Score=268.31 Aligned_cols=267 Identities=21% Similarity=0.325 Sum_probs=218.7
Q ss_pred cccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC---------CeeEEEEccCCcCCCeEEEEEE
Q psy14542 8 KSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN---------SDEVLVLDRVQREDAGMYQCHV 78 (371)
Q Consensus 8 ~~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~---------~~~~l~i~~~~~~d~G~Y~C~~ 78 (371)
..+|.+...|.. ..+.+|+.++|.|.+ .+.|.+.+.|++++..+... ...+|.|.+++.+|+|.|+|.+
T Consensus 3 ~~pP~~~~~p~~-~~~~~G~~v~l~C~~-~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~ 80 (284)
T 2rik_A 3 MAPPFFDLKPVS-VDLALGESGTFKCHV-TGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYA 80 (284)
T ss_dssp CCCCEEEECCCC-EEEETTCCEEEEEEE-ESSSCCEEEEEETTEECCSSSSEEEEEETTEEEEEESSCCGGGCEEEEEEE
T ss_pred cCCCEEEccccc-eEecCCCcEEEEEEE-EcCCCCEEEEEECCEECcCCCcEEEEEcCCEEEEEEecCCcccCEEEEEEE
Confidence 357888888988 899999999999965 46677899999999887644 4578999999999999999999
Q ss_pred EcCCCCeEEEEEEEEecceeeEecC-C-ceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCC
Q psy14542 79 SADDDSAQMSAQVILGGELVEIASS-N-QVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDA 156 (371)
Q Consensus 79 ~~~~~~~~~~~~l~v~~~~~~~~~~-~-~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (371)
.+..+.....+.|.|. .+|.+... . ...+.+|+.+.|.|.+.+.+. +.+.|++++..+...........
T Consensus 81 ~n~~g~~~~~~~l~V~-~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~-~~v~W~~~~~~~~~~~~~~~~~~------- 151 (284)
T 2rik_A 81 SNVAGKDSCSAQLGVQ-EPPRFIKKLEPSRIVKQDEHTRYECKIGGSPE-IKVLWYKDETEIQESSKFRMSFV------- 151 (284)
T ss_dssp EETTEEEEEEEEEEEE-CCCEEEECCCSEEEEETTCCEEEEEEEESSSC-CEEEEEETTEECCCSSSEEEEEE-------
T ss_pred EECCceEEEEEEEEcc-CCCcccccCCCceEecCCceEEEEEEEeeeCC-CEEEEEECCEECcCCCcEEEEEc-------
Confidence 9988888888999998 44444433 3 233589999999999998877 89999999998766543221111
Q ss_pred eeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeec
Q psy14542 157 GMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKK 236 (371)
Q Consensus 157 g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~ 236 (371)
.....|.|.+++.+| .|.|+|.+.+. .|...... .+.|. .+|.+...+.... +..
T Consensus 152 --------------~~~~~L~i~~~~~~d-~G~Y~C~a~n~-~g~~~~~~---~l~V~-----~~p~~~~~~~~~~-~~~ 206 (284)
T 2rik_A 152 --------------ESVAVLEMYNLSVED-SGDYTCEAHNA-AGSASSST---SLKVK-----EPPVFRKKPHPVE-TLK 206 (284)
T ss_dssp --------------TTEEEEEECSCCGGG-CEEEEEEEECS-SCEEEEEE---EEEEE-----CCCBCCSCCCCEE-ECT
T ss_pred --------------CCEEEEEECCCCccc-CEEEEEEEEcC-CCceeEEE---EEEEe-----cCCcceeCCCcce-ecC
Confidence 112579999999999 99999999998 77766666 78887 6777776666666 889
Q ss_pred CCeEEEEEEeecCCCCceEEEeCCcccccCCceEEec----ceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEec
Q psy14542 237 DESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIG----SSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAH 310 (371)
Q Consensus 237 g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~----~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~ 310 (371)
|+.+.|.|.+.|.|.+.+.|++++..+..+.++.... ..|.|.++..+|+|.|+|.|.|..|....++.|.|.+
T Consensus 207 g~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~ 284 (284)
T 2rik_A 207 GADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITLKA 284 (284)
T ss_dssp TCCEEEEEECBSSSCCEEEEEETTEEECBTTTEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEECC
T ss_pred CCeEEEEEEEEecCCCEEEEEECCEECcCCCCEEEEEcCCEEEEEEcCCCcccCEEEEEEEEeCCCceeEEEEEEEcC
Confidence 9999999999999999999999999988777665322 4799999999999999999999999999999988853
No 4
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}
Probab=100.00 E-value=1e-39 Score=287.93 Aligned_cols=309 Identities=22% Similarity=0.425 Sum_probs=234.0
Q ss_pred cccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC--------CeeEEEEccC-----CcCCCeEE
Q psy14542 8 KSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN--------SDEVLVLDRV-----QREDAGMY 74 (371)
Q Consensus 8 ~~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~--------~~~~l~i~~~-----~~~d~G~Y 74 (371)
.....+...|+. ..+.+|++++|.|.+..+.|.+.+.|+|+|..+... .+++|.|.++ +.+|+|.|
T Consensus 19 ~~~~~~~~~P~~-~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~D~G~Y 97 (403)
T 3laf_A 19 RRSLHFVSEPSD-AVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILALGMDDRKQQLPNGSLLIQNILHSRHHKPDEGLY 97 (403)
T ss_dssp CCSSEEEECCCC-EEECTTCCEEECCEEECTTCCCEEEEEETTEECCTTSCTTEEECTTSCEEECSCCCBTTBCSSCEEE
T ss_pred ceeEEEEeCCCc-eEEecCCcEEEEEEcCCCCCCceEEEEECCEECccCCcccEEEecCCcEEEeeeeccCCCCCcceEE
Confidence 456677788888 999999999999977666788899999999987643 4567888877 67799999
Q ss_pred EEEEEcCCCCe--EEEEEEEEecceeeEecCCc-eeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEccc
Q psy14542 75 QCHVSADDDSA--QMSAQVILGGELVEIASSNQ-VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRV 151 (371)
Q Consensus 75 ~C~~~~~~~~~--~~~~~l~v~~~~~~~~~~~~-~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~ 151 (371)
+|.+.+..+.. ...+.|.|. .++.+...+. ..+.+|+.+.|.|.+.+.+. +.+.|++++..+.....
T Consensus 98 ~C~~~~~~~~~~~s~~~~l~v~-~p~~~~~~~~~~~~~~G~~v~l~C~~~~~p~-~~v~W~~~~~~~~~~~~-------- 167 (403)
T 3laf_A 98 QCEASLGDSGSIISRTAKVMVA-GPLRFLSQTESITAFMGDTVLLKCEVIGDPM-PTIHWQKNQQDLNPIPG-------- 167 (403)
T ss_dssp EEEEECGGGCEEECCCEEEEEC-CCCEECSCCCCEEEETTSCEEECCCEECSSC-CEEEEEESSSBCCCCTT--------
T ss_pred EEEEEeCCCccEEEEEEEEEec-CCCccccCCCcEEEEcCCeEEEEEEEcccCC-CeEEEEECCEeccccCC--------
Confidence 99998644333 345777777 4555554443 44589999999999988877 79999999887643211
Q ss_pred CcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccce-eeeeeccceeeeecchhcc-ccceeeeee
Q psy14542 152 QREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGA-SLLSVNRGRLSLTENKRLL-SAAKMFEKH 229 (371)
Q Consensus 152 ~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~-~~~~~~~~~l~v~~~~~~~-~p~~~~~~~ 229 (371)
..+.....++.|.|.++..+| +|.|+|.+.+. .+. ..... .+.|...+... ++.+...+.
T Consensus 168 -------------~~~~~~~~~~~L~i~~~~~~d-~G~Y~C~~~n~-~~~~~~~~~---~l~v~~~p~~~~~~~~~~~~~ 229 (403)
T 3laf_A 168 -------------DSRVVVLPSGALQISRLQPGD-SGVYRCSARNP-ASTRTGNEA---EVRILSDPGLHRQLYFLQRPS 229 (403)
T ss_dssp -------------CCSEEECTTSCEEECSCCGGG-CEEEEEEEECS-SCCCBCCCE---EEEEECCCCCCEEEEEEECCC
T ss_pred -------------ceEEEEcCCceEEEccccccc-CEEEEEEEEcC-CCceeccce---eEEEecCCCcccCceEecCCC
Confidence 113333344689999999999 99999999987 443 22333 56665322111 122333344
Q ss_pred eeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccCCc-eE-EecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEE
Q psy14542 230 RILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDR-IQ-RIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQ 307 (371)
Q Consensus 230 ~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~-~~-~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 307 (371)
... +..|+.+.|.|.+.+.|.+.+.|++++..+..... +. ..++.|.|.++..+|+|.|+|.|.|..|.....+.|.
T Consensus 230 ~~~-~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 308 (403)
T 3laf_A 230 NVI-AIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGSNLLISNVTDDDSGTYTCVVTYKNENISASAELT 308 (403)
T ss_dssp CEE-EETTSCEEECCEEEEESCCEEEEEETTEECCCSSSSEEEETTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEE
T ss_pred ceE-ecCCCcEEEEEEcCCCCCCeEEEEECCeeccCCCceEEECCccEEEEeCCCHHHCEEEEEEEEcCCCceEEEEEEE
Confidence 444 88999999999999999999999999988765433 22 3456899999999999999999999999999999999
Q ss_pred EecCcccccccceEEEEeeeeccccccccccccccceeeeeecCCeEEEeeeeecCCCCccccC
Q psy14542 308 YAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKYR 371 (371)
Q Consensus 308 v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~ 371 (371)
|..+|. +. ..|. ...+.+|+.++|.|.+.|.|+|.++|+
T Consensus 309 V~~~p~---------~~--~~~~--------------~~~~~~g~~v~l~C~~~g~p~p~v~W~ 347 (403)
T 3laf_A 309 VLVPPW---------FL--NHPS--------------NLYAYESMDIEFECAVSGKPVPTVNWM 347 (403)
T ss_dssp EEEEEE---------EE--ECCC--------------CEECCTTCCEEECCEEEEESCCEEEEE
T ss_pred EECCCc---------Ee--ecCc--------------ceEEecCCeEEEEEEEeeccCCEEEEE
Confidence 988887 44 2221 126779999999999999999999995
No 5
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}
Probab=100.00 E-value=4.7e-39 Score=308.07 Aligned_cols=329 Identities=26% Similarity=0.430 Sum_probs=254.9
Q ss_pred eeEEecccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeCCeeEEEEccCCcCCCeEEEEEEEcCC
Q psy14542 3 LFIQVKSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHVSADD 82 (371)
Q Consensus 3 ~~~~v~~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~ 82 (371)
+.|.|..++.+.+.|.. ..+.+|++++|.|.+ .+.|.+.+.|+++|..+.. ....|.|.+++.+|+|.|+|.+.+..
T Consensus 336 ~~l~V~~~~~~~~~~~~-~~v~~G~~v~l~C~~-~g~p~~~v~W~k~g~~~~~-~~~~L~i~~v~~~d~G~Y~C~a~n~~ 412 (816)
T 3dmk_A 336 TVLTVTAPLSAKIDPPT-QTVDFGRPAVFTCQY-TGNPIKTVSWMKDGKAIGH-SESVLRIESVKKEDKGMYQCFVRNDR 412 (816)
T ss_dssp EEEEECEEEEEEEESSE-EECCTTSCEEEEEEE-EEECCCEEEEEETTEECSC-CSSEEEESSCCGGGCEEEEEEEECSS
T ss_pred EEEEEcCCCceeeCCCc-eEecCCCCEEEEEEE-eccCCCEEEEEECCEECCC-CCCEEEEcCCCHHHCEEEEEEEECCC
Confidence 44666667777888887 889999999999954 5678889999999998875 56789999999999999999999988
Q ss_pred CCeEEEEEEEEe--cceeeEecCCc-eeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCe--------------eE
Q psy14542 83 DSAQMSAQVILG--GELVEIASSNQ-VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSD--------------EV 145 (371)
Q Consensus 83 ~~~~~~~~l~v~--~~~~~~~~~~~-~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~--------------~~ 145 (371)
+.....+.|.|. ..+|.+...+. ..+.+|+.+.|.|.+.+.+. +.+.|++++..+..... ..
T Consensus 413 g~~~~~~~l~v~~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~-p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~ 491 (816)
T 3dmk_A 413 ESAEASAELKLGGRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPT-PEISWELDGKKIANNDRYQVGQYVTVNGDVVSY 491 (816)
T ss_dssp CEEEECCEEECCCSSCCCEEEEECCCEEECSSSCEEEEEEEECSSC-CEEEEEETTEECCSCTTEEEEEEECTTSCEEEE
T ss_pred CcEEEEEEEEEccccCCCceEecCcceEEcCCCCEEEEEEEecCCC-CEEEEEECCEECCCCCCcccccEEecCCCcEEE
Confidence 877777777764 24555554433 34589999999999999887 89999999988765432 24
Q ss_pred EEEcccCcCCCeeEEEEEeCCce---------------------------------------------------------
Q psy14542 146 LVLDRVQREDAGMYQCHIEDGKY--------------------------------------------------------- 168 (371)
Q Consensus 146 ~~~~~~~~~~~g~y~~~~~~~~~--------------------------------------------------------- 168 (371)
+.+.++..+|.|.|+|.+.+...
T Consensus 492 L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~k~~~~l~~~~ 571 (816)
T 3dmk_A 492 LNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLPYIRQMEKKAIVAGETLIVTCPVAGYPIDSIVWERDNRALPINR 571 (816)
T ss_dssp EEESSCCTTTCEEEEEEEEETTEEEEEEEEEEECSSCEECCCCCEEEETTCCEEEECCEECSSEEEEEEEETTEESCCST
T ss_pred EEEeeccccCCEEEEEEEEECCCeEEEEEEEEEecCCeeEccCCeEEecCCeEEEEEEecCCCCCEEEEEECCeEcccCC
Confidence 88899999999999987763211
Q ss_pred --eEeccceEEEEEee-cCCccceeEEEeeccccce-eeeeeccceeeeecchhccccceeee-eeeeeeeecCCeEEEE
Q psy14542 169 --HMLSSGELIIHQVD-ESDRYRSYQCRGVNKLTGA-SLLSVNRGRLSLTENKRLLSAAKMFE-KHRILNVKKDESVILP 243 (371)
Q Consensus 169 --~~~~~~~l~i~~~~-~~d~~g~y~C~~~~~~~~~-~~~~~~~~~l~v~~~~~~~~p~~~~~-~~~~~~~~~g~~~~l~ 243 (371)
....++.|.|.++. ..| .|.|+|.+.|. .|. ..... .+.|. .+|.+... ..... +..|+.+.|.
T Consensus 572 ~~~~~~~~~l~i~~v~~~~d-~G~Y~C~a~n~-~g~~~~~~~---~v~v~-----~~p~~~~~~~~~~~-~~~G~~v~L~ 640 (816)
T 3dmk_A 572 KQKVFPNGTLIIENVERNSD-QATYTCVAKNQ-EGYSARGSL---EVQVM-----VLPRIIPFAFEEGP-AQVGQYLTLH 640 (816)
T ss_dssp TEEECTTSEEEESSCCHHHH-CEEEEEEEEES-SSCEEEEEE---EEEEE-----CCCCCBCCCCCSSC-EESSCEEEEE
T ss_pred ceEEecCCeEEEEecCcccc-CEEEEEEEEEC-CCceeeeeE---EEEEe-----cCCccccccccccc-cCCCCeEEEE
Confidence 11123457777776 578 99999999998 553 33333 56665 44444332 23333 8899999999
Q ss_pred EEeecCCC-CceEEEeCCcccccCCceEE-----ecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEecCcccccc
Q psy14542 244 CSAQGNPL-PTIKWYKQDSPVEESDRIQR-----IGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLS 317 (371)
Q Consensus 244 C~~~~~p~-~~v~W~~~~~~~~~~~~~~~-----~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~~~~ 317 (371)
|.+.+.+. +.+.|+++|..+.....+.. ..+.|.|.++..+|+|.|+|.|.|..|....++.|.|..+|.
T Consensus 641 C~~~~~~~~~~i~W~~~g~~l~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~P~---- 716 (816)
T 3dmk_A 641 CSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVYVPPR---- 716 (816)
T ss_dssp EBCCCSSSCCEEEEEETTBCCCGGGTCEEEEETTTEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECEEEEEE----
T ss_pred EEEeCCCCCCEEEEEECCeEcCCCCCeeEEEcCCCeeEEEEccCChhhCEEEEEEEEeCCccEEEEEEEEEEeCCc----
Confidence 99986655 48999999998866544432 235799999999999999999999999999999999998888
Q ss_pred cceEEEEeeeeccccccccccccccceeeeeecCCeEEEeeeeecCCCCccccC
Q psy14542 318 SGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKYR 371 (371)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~ 371 (371)
+. ..|.. ..+.+|+.++|.|.+.|+|+|.|+|+
T Consensus 717 -----~~--~~~~~--------------~~v~~G~~v~l~C~~~g~P~p~i~W~ 749 (816)
T 3dmk_A 717 -----WI--LEPTD--------------KAFAQGSDAKVECKADGFPKPQVTWK 749 (816)
T ss_dssp -----EE--ECCCC--------------EEEETTCCEEEECEEEEESCCEEECC
T ss_pred -----ee--eeccc--------------ceecCCCcEEEEEEEecCCCCeEEEE
Confidence 54 22221 26789999999999999999999996
No 6
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Probab=100.00 E-value=4e-40 Score=289.02 Aligned_cols=314 Identities=25% Similarity=0.393 Sum_probs=231.6
Q ss_pred cceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEe-CCEEEeeC-------CeeEEEEccCCcCC------CeEEE
Q psy14542 10 SLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLK-DGLVLRRN-------SDEVLVLDRVQRED------AGMYQ 75 (371)
Q Consensus 10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~-~~~~~~~~-------~~~~l~i~~~~~~d------~G~Y~ 75 (371)
+|.+...|...+.+.+|+.++|.|.+ .+.|.+.+.|+| +|..+... .+++|.|.+++.+| +|.|+
T Consensus 3 ~P~f~~~p~~~~~~~~G~~v~l~C~~-~g~p~p~v~W~k~~g~~~~~~~~~~~~~~~~~L~i~~~~~~d~~~~~d~G~Y~ 81 (388)
T 2v5m_A 3 GPVFLKEPTNRIDFSNSTGAEIECKA-SGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYA 81 (388)
T ss_dssp EEEEEECCCSEEEEETTTCEEEECEE-EEESCCEEEEEETTSCBCCCBTTTBEECSTTEEEECCCCGGGCCHHHHEEEEE
T ss_pred CCchhhCCCceEEEEcCccEEEEEEC-CCCCCCEEEEEcCCCCccccCCCceEEcCCceEEecccChhhccccccCceEE
Confidence 67888888876778899999999965 567889999999 77765432 56689999999997 99999
Q ss_pred EEEEcCCCCe-EEEEEEEEecceeeEec-CCceeeecCCcEEEEEEecCCCC--CceEEEeeCCEEeeeCCeeEEEEccc
Q psy14542 76 CHVSADDDSA-QMSAQVILGGELVEIAS-SNQVVVDVGHRIELHCRVSPKRL--SSAKAWLKDGLVLRRNSDEVLVLDRV 151 (371)
Q Consensus 76 C~~~~~~~~~-~~~~~l~v~~~~~~~~~-~~~~~~~~g~~v~l~C~~~~~~~--~~~v~W~~~~~~~~~~~~~~~~~~~~ 151 (371)
|.+.|..|.. +..+.|.+. .++.+.. .....+.+|+.++|.|.+.+.+. .+.+.|++++..+......
T Consensus 82 C~a~n~~g~~~s~~~~v~v~-~~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~------- 153 (388)
T 2v5m_A 82 CLARNQFGSIISRDVHVRAV-VAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAE------- 153 (388)
T ss_dssp EEEEETTEEEECCCEEEEEE-CCCCCCCBCCCEEEETTSCEEECCBCCTTTTTTEEEEEEEETTCCEECSSSC-------
T ss_pred EEEEccCCeEEecceEEEEc-cccccccCccceeeecCCcEEEEEECcCCCCCCcceEEEEeCCCcccccccC-------
Confidence 9999987753 345666666 3333333 33344589999999999987653 2789999998765432100
Q ss_pred CcCCCeeEEEEEeCCceeEeccceEEEEEeecCCcc-ceeEEEeeccccceeeeeeccceeeeecchhccccceee-eee
Q psy14542 152 QREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRY-RSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMF-EKH 229 (371)
Q Consensus 152 ~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~-g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~-~~~ 229 (371)
. ++++.+..++.|.|.+++.+| . |.|+|.+.+...+....+.....+.|..+.....|.+.. ...
T Consensus 154 ---~---------~~~~~~~~~~~L~i~~v~~~d-~~G~Y~C~~~n~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~ 220 (388)
T 2v5m_A 154 ---Y---------DGKYLVLPSGELHIREVGPED-GYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQK 220 (388)
T ss_dssp ---B---------TTTEEECTTSCEEESSCCGGG-GGCCEEEEEEETTTCCEEECSSCBCEEEECCCSCEEEECCSSCCC
T ss_pred ---C---------CCcEEEccCCcEEEecCCccc-cCeeEEEEeccCCCCceeeccccceEEEecCCcCCCCcCccccCC
Confidence 0 234555556789999999999 8 999999998733433333222245555321111222211 112
Q ss_pred eeeeeecCCeEEEEEEeecCCCCceEEEeCCccc------ccCCceEEecceEEEeccCCCCCeEEEEEEEcCCCCceeE
Q psy14542 230 RILNVKKDESVILPCSAQGNPLPTIKWYKQDSPV------EESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQ 303 (371)
Q Consensus 230 ~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~------~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~ 303 (371)
... +..|+.+.|.|.+.|.|.+.+.|++++..+ ....++...++.|.|.++..+|+|.|+|.|.|..|.....
T Consensus 221 ~~~-v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~ 299 (388)
T 2v5m_A 221 PLE-LMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVE 299 (388)
T ss_dssp CEE-EETTSCEEECCCCEEESCCEEEEEEECTTSSCEEECCCSSSEEEETTEEEESSCCGGGCEEEEEEEECSSCEEEEE
T ss_pred ceE-EeeCCcEEEEEECCCCCCCEEEEEecCCCCcccccccccCceecccCEEEECcCCHHHCeEEEEEEecCCCceeEE
Confidence 233 788999999999999999999999986533 2334555667899999999999999999999999999999
Q ss_pred EEEEEecCcccccccceEEEEeeeeccccccccccccccceeeeeecCCeEEEeeeeecCCCCccccC
Q psy14542 304 LFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKYR 371 (371)
Q Consensus 304 ~~l~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~ 371 (371)
+.|.|..+|. +. ..|. ...+.+|+.++|.|.+.|+|+|.|+|+
T Consensus 300 ~~l~V~~~p~---------~~--~~~~--------------~~~v~~g~~~~l~C~~~g~p~p~i~W~ 342 (388)
T 2v5m_A 300 TVLTVTAPLS---------AK--IDPP--------------TQTVDFGRPAVFTCQYTGNPIKTVSWM 342 (388)
T ss_dssp EEEEEEEEEE---------EE--EESS--------------EEEECTTSCEEEEEEEEEECCCEEEEE
T ss_pred EEEEEeCCCc---------cc--cCCC--------------cEEecCCCCEEEEEEeccccCCeEEEE
Confidence 9999988777 44 2221 226889999999999999999999995
No 7
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}
Probab=100.00 E-value=3.2e-39 Score=284.52 Aligned_cols=293 Identities=13% Similarity=0.171 Sum_probs=203.1
Q ss_pred ceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC--------CeeEEEEccCCcCCCeEEEEEEEcCC
Q psy14542 11 LSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN--------SDEVLVLDRVQREDAGMYQCHVSADD 82 (371)
Q Consensus 11 ~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~--------~~~~l~i~~~~~~d~G~Y~C~~~~~~ 82 (371)
..+..+|.. +.+.+|+++.|.|.+ .+.|.+.+.|++++..+... ...+|.|.+++.+|+|.|+|.|.|..
T Consensus 49 ~~~~~~~~~-v~V~~G~~v~L~C~v-~g~P~p~i~W~~~~~~l~~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~ 126 (423)
T 3qs7_E 49 SGTVYEAAA-VEVDVSASITLQVLV-DAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEA 126 (423)
T ss_dssp -------CE-EEECSSCCEEEEEEC-SCCSSCEEEEEETTEEECCCCBC-----CEEEEEESSCCSSSCSEEEEEEEC--
T ss_pred Ccceecccc-EEEecCCcEEEEEEE-EcCCCCeEEEEECCCccCccceeccccceEEEEEEeecCcccCEEEEEEEEcCC
Confidence 345556665 899999999999954 56888999999999876542 23579999999999999999999998
Q ss_pred CCeEEEEEEEEecceeeEecCCceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEE
Q psy14542 83 DSAQMSAQVILGGELVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCH 162 (371)
Q Consensus 83 ~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~ 162 (371)
+.....+.|.|. .+|.+..........|+.+.|.|.+.|.|. +.++|++++..+......
T Consensus 127 g~~~~~~~l~V~-~~p~~~~~~p~~~~~~~~~~L~C~a~G~P~-P~i~W~k~~~~~~~~~~~------------------ 186 (423)
T 3qs7_E 127 TNYTILFTVSIR-NTLLYTLRRPYFRKMENQDALVCISESVPE-PIVEWVLCDSQGESCKEE------------------ 186 (423)
T ss_dssp CEEEEEEEEEEC------CEEEEEEEECSSSSCEEEEEEESSC-CEEEEEEC----------------------------
T ss_pred CcEEEEEEEEEe-cCccccccCCcEeccCCceEEEEEEeeecC-CeEEEEECCCCCcccccc------------------
Confidence 888888888888 444443222223356888899999999888 999999988754321100
Q ss_pred EeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeee-eeccceeeeecchhccccceeeeeeeeeeeecCCeEE
Q psy14542 163 IEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLL-SVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVI 241 (371)
Q Consensus 163 ~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~-~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~ 241 (371)
....+.....+ +...| +|.|+|.|.|. .|.... .+ .|.|. .+|.+. +.... +.+|+.+.
T Consensus 187 ---~~~~~~~~~~~----l~~~d-~G~Y~C~A~N~-~G~~~~~~~---~l~V~-----~~p~~~--~~~~~-v~~G~~v~ 246 (423)
T 3qs7_E 187 ---SPAVVKKEEKV----LHELF-GTDIRCCARNE-LGRECTRLF---TIDLN-----QTPQTT--LPQLF-LKVGEPLW 246 (423)
T ss_dssp ------CEEECCSE----ECCCC-SSCEEEEEECS-SCEEEEECE---EEESS-----SCCCSS--TTEEE-EETTSCEE
T ss_pred ---ccccccccceE----Eeccc-CeEEEEEEEcC-CCCcceeeE---EEEEe-----cCCccC--CCceE-EeCCCeEE
Confidence 00000000111 15678 99999999998 665433 23 56665 333331 22344 88999999
Q ss_pred EEEEeec-CCCCceEEEeCCcccccCCce----------EEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEec
Q psy14542 242 LPCSAQG-NPLPTIKWYKQDSPVEESDRI----------QRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAH 310 (371)
Q Consensus 242 l~C~~~~-~p~~~v~W~~~~~~~~~~~~~----------~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~ 310 (371)
|.|.+.| .|.+.+.|++++..+.....+ ....+.|.|.++..+|+|.|+|.|.|. ...++.|.|.+
T Consensus 247 L~C~~~g~~p~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~---~~~~~~L~V~~ 323 (423)
T 3qs7_E 247 IRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH---PSQSALVTIVE 323 (423)
T ss_dssp EEEEEEESSSCCCEEEEESSSBCCGGGEEEEEEEETTTEEEEEEEEEESSCCTTTCEEEEEEETTE---EEEEEEEEEES
T ss_pred EEEEEEcCCCCcEEEEEECCEEccccceeecccccCCceeEEEEEEEEeecCHHHCEEEEEEEecC---CCceEEEEEEe
Confidence 9999998 677999999999987654322 223357999999999999999999998 77888899988
Q ss_pred CcccccccceEEEEeeeeccccccccccccccceeeeeecCCeEEEeeeeecCCCCccccC
Q psy14542 311 GKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKYR 371 (371)
Q Consensus 311 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~ 371 (371)
+|. +. ..|... ...+.+|+.+.|.|.+.|+|+|.|+|+
T Consensus 324 ~p~---------i~--~~~~~~------------~~~v~~G~~v~l~C~~~g~P~p~i~W~ 361 (423)
T 3qs7_E 324 KGF---------IN--ATNSSE------------DYEIDQYEEFCFSVRFKAYPQIRCTWT 361 (423)
T ss_dssp SCE---------EE--EC---C------------EECCCTTCCCCEEEEEEEESCCEEEEE
T ss_pred CCc---------ce--EcCCCc------------cEEecCCCeEEEEEEEEEcCCCeEEEE
Confidence 887 54 222111 126789999999999999999999996
No 8
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*
Probab=100.00 E-value=2e-39 Score=286.08 Aligned_cols=314 Identities=21% Similarity=0.355 Sum_probs=230.7
Q ss_pred EecccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC---------CeeEEEEc----cCCcCCCe
Q psy14542 6 QVKSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN---------SDEVLVLD----RVQREDAG 72 (371)
Q Consensus 6 ~v~~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~---------~~~~l~i~----~~~~~d~G 72 (371)
.+..+|.+...+.....+.+|+.++|.|.+ .+.|.+.+.|+|+|..+... ..++|.|. +++.+|+|
T Consensus 12 ~~~~~P~i~~~~~~~~~v~~G~~v~l~C~~-~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~~D~G 90 (404)
T 3p3y_A 12 ELTQPPTITKQSAKDHIVDPRDNILIECEA-KGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSGTLVIDFRSGGRPEEYEG 90 (404)
T ss_dssp -CCCCCCEEEECCTTCEECSSSCCCCCEEE-CCSSCCEEEEEETTEECCGGGCSSCBCCSSSCCCBCCCTTTCCTTSSCE
T ss_pred hccCCCcccccCCccEEEcCCCCEEEEEEe-cCCCCCeEEEEECCEEeeeecCCcceEecCCceEEEEeccCCCCccCCE
Confidence 345678888776555899999999999964 66788999999999977532 34566664 88899999
Q ss_pred EEEEEEEcCCCCe-EEEEEEEEecceeeEecC-CceeeecCCcEEEEEEe-cCCCCCceEEEeeCCEEeeeCCeeEEEEc
Q psy14542 73 MYQCHVSADDDSA-QMSAQVILGGELVEIASS-NQVVVDVGHRIELHCRV-SPKRLSSAKAWLKDGLVLRRNSDEVLVLD 149 (371)
Q Consensus 73 ~Y~C~~~~~~~~~-~~~~~l~v~~~~~~~~~~-~~~~~~~g~~v~l~C~~-~~~~~~~~v~W~~~~~~~~~~~~~~~~~~ 149 (371)
.|+|.+.+..+.. +..+.|.|...+...... ....+.+|+.++|.|.+ .+.+. +.+.|++++.......
T Consensus 91 ~Y~C~a~n~~g~~~s~~~~l~V~~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~-~~v~W~~~~~~~~~~~------- 162 (404)
T 3p3y_A 91 EYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPS-PVIFWMSSSMEPITQD------- 162 (404)
T ss_dssp EEEEEEECSSCEEEEEEEEEEECCCCCCCCCCCCCEEEETTSCEEECCCCCCCSSC-CEEEEECTTSCBCCCC-------
T ss_pred EEEEEEEcCCCeEeeeeEEEEEeccCccccCCCCCeEEccCCcEEEEeCCCCCCCC-CeEEEeCCCccccCCC-------
Confidence 9999999987766 467888888433322222 22445899999999999 55565 8999999875433221
Q ss_pred ccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchh--ccccceeee
Q psy14542 150 RVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKR--LLSAAKMFE 227 (371)
Q Consensus 150 ~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~--~~~p~~~~~ 227 (371)
.+.....++.|.|.++...|+.|.|+|.+.+. .+..........+.+..... ..+|.+...
T Consensus 163 ----------------~~~~~~~~~~l~i~~v~~~d~~G~Y~C~a~n~-~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~ 225 (404)
T 3p3y_A 163 ----------------KRVSQGHNGDLYFSNVMLQDMQTDYSCNARFH-FTHTIQQKNPFTLKVLTTRGVAERTPSFMYP 225 (404)
T ss_dssp ----------------SSEEECTTSCEEESSCCSGGGSSCBEEEEECT-TTCCEEECCCBCEEEECCSCCCCCCCCBSSS
T ss_pred ----------------CcEEEcCCCcEEEEeeeeccCCcceEEEEEec-cccceeccCceeEEEeccCCccccCCccccc
Confidence 13333345789999999999339999999987 44332222122444432110 122333221
Q ss_pred ---eeeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccCCce-EEecceEEEeccCCCCCeEEEEEEEcCCCCceeE
Q psy14542 228 ---KHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRI-QRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQ 303 (371)
Q Consensus 228 ---~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~ 303 (371)
..... +..|+.+.|.|.+.+.|.+.+.|++++..+...... ...++.|.|.++..+|+|.|+|.|.|..|.....
T Consensus 226 ~~~~~~~~-~~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~ 304 (404)
T 3p3y_A 226 QGTASSQM-VLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKAKFENFNKALRITNVSEEDSGEYFCLASNKMGSIRHT 304 (404)
T ss_dssp CSSEEEEE-EETTSCEEEECCBCCSSCCEEEEEETTBCCCTTTEEEEGGGTEEEESSCCGGGCEEEEEEEECSSCEEEEE
T ss_pred cCCCCCce-EecCCCEEEEEEECCCCCCcEEEEECCEECCCCcccccccCceEEEccCCHhHCEEEEEEEEeCCCcEEEE
Confidence 12333 889999999999999999999999999988765432 2345789999999999999999999999999999
Q ss_pred EEEEEecCcccccccceEEEEeeeeccccccccccccccceeeeeecCCeEEEeeeeecCCCCccccC
Q psy14542 304 LFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKYR 371 (371)
Q Consensus 304 ~~l~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~ 371 (371)
+.|.|..+|. +. ..|. ...+.+|+.++|.|.+.|+|+|.++|+
T Consensus 305 ~~l~V~~~p~---------~~--~~~~--------------~~~v~~g~~~~l~C~~~g~p~p~v~W~ 347 (404)
T 3p3y_A 305 ISVRVKAAPY---------WL--DEPK--------------NLILAPGEDGRLVCRANGNPKPTVQWM 347 (404)
T ss_dssp EEEEEEEEEE---------EE--ECCC--------------CEEECTTCCEEEECEEEEESCCEEEEE
T ss_pred EEEEEeCCCe---------ee--ccCC--------------cceeecCCcEEEEEEccccCCCceEEE
Confidence 9999998887 54 2222 126789999999999999999999995
No 9
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*
Probab=100.00 E-value=1.1e-39 Score=285.37 Aligned_cols=309 Identities=24% Similarity=0.399 Sum_probs=218.1
Q ss_pred ccceEEEeCCCcEEE---eccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC-------CeeEEEEccC-CcCCCeEEEEE
Q psy14542 9 SSLSIEMSPSGQVVV---DVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN-------SDEVLVLDRV-QREDAGMYQCH 77 (371)
Q Consensus 9 ~~~~~~~~p~~~~~~---~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~-------~~~~l~i~~~-~~~d~G~Y~C~ 77 (371)
.+|.+...|.. ..+ .+|+.+.|.|. ..+.|.+.|.|+|+|..+... .+++|.|.++ +.+|+|.|+|.
T Consensus 4 ~~P~f~~~P~~-~~~~~~~eg~~v~L~C~-~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~g~l~i~~~~~~~D~G~Y~C~ 81 (384)
T 3kld_A 4 SGPVFVQEPSH-VMFPLDSEEKKVKLSCE-VKGNPKPHIRWKLNGTDVDIGMDFRYSVVDGSLLINNPNKTQDAGTYQCI 81 (384)
T ss_dssp EEEEEEECCCC-EEEETTCSCSEEEECCE-EEEESCCEEEEEETTEECCC----CEEEETTEEEEESCCHHHHCEEEEEE
T ss_pred CCCEEEeCCcc-eEeecCCCCCeEEEEeE-ecCCCCCEEEEEECCEECcCCCCccEEEECCEEEEcCCCCcccCEEEEEE
Confidence 35677777877 555 58899999995 467888999999999987543 2346777665 78899999999
Q ss_pred EEcCCCCe-EEEEEEEEecceeeEec--CCceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcC
Q psy14542 78 VSADDDSA-QMSAQVILGGELVEIAS--SNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQRE 154 (371)
Q Consensus 78 ~~~~~~~~-~~~~~l~v~~~~~~~~~--~~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~ 154 (371)
|.|..|.. .....|.+. ..+.+.. .....+.+|+.+.|.|......+.+.+.|++++..+.....
T Consensus 82 A~N~~G~~~s~~~~l~v~-~~~~~~~~~~~~~~v~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~----------- 149 (384)
T 3kld_A 82 ATNSFGTIVSREAKLQFA-YLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNR----------- 149 (384)
T ss_dssp EEETTEEEECCCEEEEEE-EECCCSCCCCCCEEEEETCCEEECCCCCSEESCEEEEEEETTEECCCSSS-----------
T ss_pred EEcCcccEEecceEEEEe-cccccccCCCCceeEEcCCCeEEecCCCCCCCCeEEEEEECCCCCEeecc-----------
Confidence 99987754 223445544 2222222 22344588999999997654333379999999987653321
Q ss_pred CCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecc--hhccccceeee-eeee
Q psy14542 155 DAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTEN--KRLLSAAKMFE-KHRI 231 (371)
Q Consensus 155 ~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~--~~~~~p~~~~~-~~~~ 231 (371)
++....++.|.|.++..+| +|.|+|.+.|. .+..........+.+... .....|.+... +...
T Consensus 150 ------------~~~~~~~~~L~I~~v~~~D-~G~Y~C~a~n~-~~~~~~~~~~~~~~v~~~~~~~~~~p~~~~~~~~~~ 215 (384)
T 3kld_A 150 ------------RFVSQETGNLYIAKVEKSD-VGNYTCVVTNT-VTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETV 215 (384)
T ss_dssp ------------EEECTTTCCEEESSCCGGG-CEEEEEEEEET-TTTEEEECCCEEEEEEEEEECCCEEEEEEEECCSEE
T ss_pred ------------EEEEcCCCcEEEeecCHHH-CceEEEEEecc-cccceeeCCceEEEEccCCcccccCCceeecCCCce
Confidence 1112233679999999999 99999999997 443222111112222210 00123333332 3334
Q ss_pred eeeecCCeEEEEEEeecCCCCceEEEeCCc-ccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEec
Q psy14542 232 LNVKKDESVILPCSAQGNPLPTIKWYKQDS-PVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAH 310 (371)
Q Consensus 232 ~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~ 310 (371)
. +..|+.+.|.|.+.|.|.|.+.|++++. .+....+....++.|.|.++..+|+|.|+|.|.|..|.......|.|..
T Consensus 216 ~-~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~v~~ 294 (384)
T 3kld_A 216 P-AEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYA 294 (384)
T ss_dssp E-EETTSCEEEEEEEEEESCCEEEEEETTCCCCCTTCEECTTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEE
T ss_pred E-ecCCCcEEEEEEEeecCCCcEEEEeCCCccccccceecCCCcEEEECCCChhhCEEEEEEEEcCCCeEEEEEEEEEec
Confidence 4 8899999999999999999999999544 5544333334467899999999999999999999999999999999988
Q ss_pred CcccccccceEEEEeeeeccccccccccccccceeeeeecCCeEEEeeeeecCCCCccccC
Q psy14542 311 GKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKYR 371 (371)
Q Consensus 311 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~ 371 (371)
+|. +. ..+. ...+.+|+.+.|.|.+.|.|+|.|+|+
T Consensus 295 ~P~---------~~--~~~~--------------~~~v~~g~~v~l~C~~~g~P~p~i~W~ 330 (384)
T 3kld_A 295 QPN---------WV--QIIN--------------DIHVAMEESVFWECKANGRPKPTYRWL 330 (384)
T ss_dssp EEE---------EE--ECCC--------------CEEECTTCCEEEECEEEEESCCEEEEE
T ss_pred CCc---------cc--cCCC--------------ceEecCCCCEEEEeECCccCCCeEEEE
Confidence 887 54 1111 126789999999999999999999996
No 10
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}
Probab=100.00 E-value=1.3e-38 Score=287.78 Aligned_cols=308 Identities=13% Similarity=0.112 Sum_probs=212.2
Q ss_pred EEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC--------CeeEEEEccCCcCCCeEEEEEEEcCCCC
Q psy14542 13 IEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN--------SDEVLVLDRVQREDAGMYQCHVSADDDS 84 (371)
Q Consensus 13 ~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~--------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 84 (371)
+.+++. ++.+.+|++++|.|. ..+.+..++.|++++..+... ...+|.|.+++.+|+|.|+|.+.+..+.
T Consensus 51 ~~~~~~-~~~v~~g~~~~L~c~-~~~~~~~~~~W~~~~~~l~~~~~~~~~~r~~~SL~I~~v~~~D~G~Y~C~~~n~~~~ 128 (527)
T 3qs9_E 51 TVYEAA-AVEVDVSASITLQVL-VDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATN 128 (527)
T ss_dssp -----C-EEEECSSCCEEEEEE-CSCCSSCEEEEEETTEEECCCCBC-----CEEEEEESSCCSSSCSEEEEEEEC--CE
T ss_pred ceeeee-eEEEeccccEEEEEE-EecCCceeEEEEecCCccCcccccCCCcceEEEEEECcCChhhCeeEEEEEEecccc
Confidence 444555 489999999999994 556777899999998876543 3346999999999999999999988776
Q ss_pred eEEEEEEEEecceeeEecCCceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCC-----eeEEEEcccCcCCCeeE
Q psy14542 85 AQMSAQVILGGELVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNS-----DEVLVLDRVQREDAGMY 159 (371)
Q Consensus 85 ~~~~~~l~v~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~-----~~~~~~~~~~~~~~g~y 159 (371)
....+.|.|.. .+............|+.+.|.|.+.|.|. +.++|++++..+.... ........++..|.|.|
T Consensus 129 ~~~~~~v~v~~-~~~~~~~~p~~~~~~~~~~L~C~a~G~P~-P~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~G~Y 206 (527)
T 3qs9_E 129 YTILFTVSIRN-TLLYTLRRPYFRKMENQDALVCISESVPE-PIVEWVLCDSQGESCKEESPAVVKKEEKVLHELFGTDI 206 (527)
T ss_dssp EEEEEEEEEC------CEEEEEEEECSSSSCEEEEEEESSC-CEEEEEEC-------------CEEECCSEECCCCSSCE
T ss_pred EEEEEEEEECC-ceeeccCCCcEEecCCceEEEEEEceecC-CeEEEEECCCCCccccccCCcEEEEeeeeccccCCEEE
Confidence 66666666651 11111111112256788899999999988 9999999876553211 11112223446778888
Q ss_pred EEEEeCCce---------------------------------------------e------------------------E
Q psy14542 160 QCHIEDGKY---------------------------------------------H------------------------M 170 (371)
Q Consensus 160 ~~~~~~~~~---------------------------------------------~------------------------~ 170 (371)
+|.+.|... . .
T Consensus 207 ~C~A~N~~G~~~~~~~~l~V~~~p~~~p~~~~v~~G~~v~L~C~~~~g~p~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~ 286 (527)
T 3qs9_E 207 RCCARNELGRECTRLFTIDLNQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTM 286 (527)
T ss_dssp EEEEECSSCEEEEECEEEESSSCCCCSCCEEEECTTSCEEEEEEEEESSSCCCEEEECSSSCCCGGGEEEEEEEETTTEE
T ss_pred EEEEEeCCCcccceEEEEEEeccCccCCCceEEeCCCeEEEEEEEccCCCCeEEEEEECCEECCCCceeeeeeeccCcce
Confidence 865552100 0 0
Q ss_pred eccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeee--eeeeeeecCCeEEEEEEeec
Q psy14542 171 LSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEK--HRILNVKKDESVILPCSAQG 248 (371)
Q Consensus 171 ~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~--~~~~~~~~g~~~~l~C~~~~ 248 (371)
.....|.|.+++.+| +|.|+|.+.|. ..... .|.|. .+|.+...+ .... +..|+.+.|.|.+.|
T Consensus 287 ~~~~~L~I~~v~~~D-sG~Y~C~a~N~----~~~~~---~L~V~-----~~p~i~~~~~~~~~~-v~~G~~v~L~C~~~g 352 (527)
T 3qs9_E 287 IRILFAFVSSVARND-TGYYTCSSSKH----PSQSA---LVTIV-----EKGFINATNSSEDYE-IDQYEEFCFSVRFKA 352 (527)
T ss_dssp EEEEEEEESSCCGGG-CEEEEEEETTE----EEEEE---EEEEC-------CEEECCCSCCEEC-CCTTCCCCEEEEEEE
T ss_pred eeEEEEEEccCCccc-CeEEEEEEEeC----CCceE---EEEEE-----ccCccccccCcccEE-EcCCCeEEEEEEEEe
Confidence 011238889999999 99999999986 33344 67776 444443322 2334 888999999999999
Q ss_pred CCCCceEEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEecCcccccccceEEEEeeee
Q psy14542 249 NPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDE 328 (371)
Q Consensus 249 ~p~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~ 328 (371)
.|.|.+.|+++|..+....+....+..|.|.++..+|+|.|+|.|.|..|....++.|.|..+|. +. ..
T Consensus 353 ~P~p~i~W~k~g~~l~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~g~~~~~~~L~V~~~P~---------i~--~~ 421 (527)
T 3qs9_E 353 YPQIRCTWTFSRKSFPCEQKGLDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRRKPQ---------VL--AE 421 (527)
T ss_dssp ESCCEEEEEETTEEEECBCCBCSSSSEEEEECCCTTCCSCEEEEEEETTEEEEEEEEEC--CCCE---------EE--EC
T ss_pred cCCCEEEEEECCEECcCCcccccCCcEEEEecCCcccCEEEEEEEEeCCCcEEEEEEEEEecCCe---------EE--Ee
Confidence 99999999999998876655444567899999999999999999999999999999999999998 55 11
Q ss_pred ccccccccccccccceeeeeecCCeEEEeeeeecCCCCccccC
Q psy14542 329 KNKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKYR 371 (371)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~ 371 (371)
..| ..|.|.+.|+|+|.|+|+
T Consensus 422 --------------------~~~--~~l~C~a~g~P~p~i~W~ 442 (527)
T 3qs9_E 422 --------------------ASA--SQASCFSDGYPLPSWTWK 442 (527)
T ss_dssp --------------------CCC--E---EEEECSSCCEEEEE
T ss_pred --------------------CCC--CEEEEEEEEEcCCeEEEE
Confidence 112 257999999999999995
No 11
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Probab=100.00 E-value=1.6e-37 Score=289.82 Aligned_cols=322 Identities=19% Similarity=0.339 Sum_probs=242.3
Q ss_pred eEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeCCeeEEEEccCCcCCCeEEEEEEEcCCCCeE--EEE
Q psy14542 12 SIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHVSADDDSAQ--MSA 89 (371)
Q Consensus 12 ~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~--~~~ 89 (371)
.+.+.|.. ..+.+|+.++|.|.+ .+.|.+.+.|+++|..+. ....|.|.+++.+|+|.|+|.+.|..+... ..+
T Consensus 205 ~~~~~~~~-~~~~~G~~~~l~C~~-~g~p~~~i~W~~~g~~i~--~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~ 280 (642)
T 1e07_A 205 APTISPLN-TSYRSGENLNLSCHA-ASNPPAQYSWFVNGTFQQ--STQELFIPNITVNNSGSYTCQAHNSDTGLNRTTVT 280 (642)
T ss_pred CcEEecCC-cccccCCEEEEEEEc-CCCCCcEEEEEECCeEcc--cCCceEEecccccCCeEEEEEEEeCCCceEEeeeE
Confidence 34556665 678999999999965 778889999999999886 567899999999999999999999877653 345
Q ss_pred EEEEecc--eeeEecCCceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCC-------eeEEEEcccCcCCCeeEE
Q psy14542 90 QVILGGE--LVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNS-------DEVLVLDRVQREDAGMYQ 160 (371)
Q Consensus 90 ~l~v~~~--~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~-------~~~~~~~~~~~~~~g~y~ 160 (371)
.|.|... ++.+.......+..|+.+.|.|.+.+.+ +.+.|++++..+.... ...|.+.++..+|.|.|+
T Consensus 281 ~v~v~~~~~~p~i~~~~~~~~~~g~~v~l~C~~~~~p--~~v~W~~~g~~l~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 358 (642)
T 1e07_A 281 TITVYAEPPKPFITSNNSNPVEDEDAVALTCEPEIQN--TTYLWWVNNQSLPVSPRLQLSNDNRTLTLLSVTRNDVGPYE 358 (642)
T ss_pred EEEEEccCCCCEEEcCCceeEecCCcEEEEEECCCCC--ccEEEEECCccCCCcCCEEEeCCCCEEEEeccCcccCeeEE
Confidence 6666532 2444443333446688899999998865 5999999998764432 346888999999999999
Q ss_pred EEEeCCcee-------E-----------------------------------------------eccceEEEEEeecCCc
Q psy14542 161 CHIEDGKYH-------M-----------------------------------------------LSSGELIIHQVDESDR 186 (371)
Q Consensus 161 ~~~~~~~~~-------~-----------------------------------------------~~~~~l~i~~~~~~d~ 186 (371)
|.+.+.... + .....|.|.++..+|
T Consensus 359 C~a~n~~g~~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~i~W~~~g~~~~~~~~L~i~~~~~~d- 437 (642)
T 1e07_A 359 CGIQNELSVDHSDPVILNVLYGPDDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLIDGNIQQHTQELFISNITEKN- 437 (642)
T ss_pred EEEeCCCCCcceeeEEEEEEcCCCCCeecCCceEecCCCcEEEEEEcCccCCCeEEEEECCEEcCCCceEEEccCChhh-
Confidence 887753210 0 011357788889999
Q ss_pred cceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccC
Q psy14542 187 YRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEES 266 (371)
Q Consensus 187 ~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~ 266 (371)
.|.|+|.+.|. .|....+. .+.|.......+|.+.. ..... +..|+.+.|.|.+. .|.+.+.|+++|..+...
T Consensus 438 ~G~Y~C~a~n~-~g~~~~s~---~~~v~v~~~~~~p~i~~-~~~~~-v~~g~~v~l~C~~~-~~~~~i~W~~~g~~l~~~ 510 (642)
T 1e07_A 438 SGLYTCQANNS-ASGHSRTT---VKTITVSAELPKPSISS-NNSKP-VEDKDAVAFTCEPE-AQNTTYLWWVNGQSLPVS 510 (642)
T ss_pred CeEEEEEEEcC-CCCCcccc---eEEEEEeccCCCceEec-CCcee-ecCCCeEEEEEECC-CCCcEEEEEECCEeCCCC
Confidence 99999999998 55444433 33333322223444443 22333 78999999999998 478899999999998887
Q ss_pred CceEE--ecceEEEeccCCCCCeEEEEEEEcCCCCce-eEEEEEEecCcccccccceEEEEeeeeccccccccccccccc
Q psy14542 267 DRIQR--IGSSLSISHVEESDSGVWNCVANNSEGQDK-MQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKH 343 (371)
Q Consensus 267 ~~~~~--~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~-~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (371)
.++.. .++.|.|.++..+|+|.|+|.|.|..|... ..+.|.|..+|. .. ...|.
T Consensus 511 ~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~p~---------~~-~~~~~------------- 567 (642)
T 1e07_A 511 PRLQLSNGNRTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPD---------TP-IISPP------------- 567 (642)
T ss_pred CcEEEcCCCcEEEEeecChhcCceEEEEeEcCCCCccCCCEEEEEEeCCC---------cc-eecCC-------------
Confidence 77664 356899999999999999999999999854 468888887665 11 01111
Q ss_pred eeeeeecCCeEEEeeeeecCCCCccccC
Q psy14542 344 RILNVKKDESVILPCSAQGNPLPTIKYR 371 (371)
Q Consensus 344 ~~~~~~~g~~~~l~C~~~g~p~p~i~W~ 371 (371)
...+.+|+.+.|.|.+.|.|+|.++|+
T Consensus 568 -~~~v~~g~~~~l~C~~~g~p~p~v~W~ 594 (642)
T 1e07_A 568 -DSSYLSGANLNLSCHSASNPSPQYSWR 594 (642)
T ss_pred -ceeEEcCCcEEEEEEeccCCCCeEEEE
Confidence 127889999999999999999999996
No 12
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Probab=100.00 E-value=2.2e-38 Score=288.70 Aligned_cols=307 Identities=14% Similarity=0.252 Sum_probs=231.3
Q ss_pred eeEEecccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEe-CCEEEeeC------CeeEEEEccCCcCCCe-EE
Q psy14542 3 LFIQVKSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLK-DGLVLRRN------SDEVLVLDRVQREDAG-MY 74 (371)
Q Consensus 3 ~~~~v~~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~-~~~~~~~~------~~~~l~i~~~~~~d~G-~Y 74 (371)
+.|.|..++.+...+.. ..+.+|+.++|.|.+ .+.+.+.+.|++ +|..+... ....|.|.+++.+|+| .|
T Consensus 107 ~~l~V~~p~~~~~~~~~-~~v~~G~~v~l~C~~-~~~~~~~v~W~~~~g~~l~~~~~~~~~~~~~L~i~~~~~~d~G~~Y 184 (524)
T 2ec8_A 107 IYVFVRDPAKLFLVDRS-LYGKEDNDTLVRCPL-TDPEVTNYSLKGCQGKPLPKDLRFIPDPKAGIMIKSVKRAYHRLCL 184 (524)
T ss_dssp EEEECCCSSCSBCCCCC-CCEETTSCEEECCCB-SCCCCSCEEEECSSSCCCCSSCEEEEETTTEEEEESCCGGGTTCEE
T ss_pred EEEEECCCCcccccccc-eEEEcCCeEEEECcC-CCCccceEEEEccCCcCcCCCCceeECCCccEEEeccchhhCCceE
Confidence 45666655555566666 789999999999954 455568999988 77666432 4568999999999999 99
Q ss_pred EEEEEcCCCCe-EEEEEEEEe---cceeeEecCCcee-eecCCcEEEEEEecCCCCCceEEEeeCCEEe--eeCCeeEEE
Q psy14542 75 QCHVSADDDSA-QMSAQVILG---GELVEIASSNQVV-VDVGHRIELHCRVSPKRLSSAKAWLKDGLVL--RRNSDEVLV 147 (371)
Q Consensus 75 ~C~~~~~~~~~-~~~~~l~v~---~~~~~~~~~~~~~-~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~--~~~~~~~~~ 147 (371)
+|.+.+..+.. ...+.|.|. ..+|.+...+... +.+|+.+.|.|.+.+.+.+..+.|++++..+ ..... ..
T Consensus 185 ~C~a~n~~~~~~s~~~~l~V~~~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~~i~W~~~~~~~~~~~~~~--~~ 262 (524)
T 2ec8_A 185 HCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYN--SW 262 (524)
T ss_dssp EEEEC----CCCCCCEECCEECCCCSCCEEECSCSEEEEETTSCEEEEEEEEESSTTCEEEEEETTCSCCCCEEEE--EE
T ss_pred EEEEEECCceEEEEEEEEEEEeCCCCCCcEEecCCcceEEcCCcEEEEEEEecCCCcEEEEEEeCCCCCccccccc--cc
Confidence 99999876654 336777775 2566666555444 4899999999999988773459999998763 22111 00
Q ss_pred EcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeee
Q psy14542 148 LDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFE 227 (371)
Q Consensus 148 ~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~ 227 (371)
+ .+.+.....+.|.|.++..+| +|.|+|.+.|. .|...... .|.|. .+|.+...
T Consensus 263 ~----------------~~~~~~~~~~~L~I~~~~~~D-~G~Y~C~a~n~-~g~~~~~~---~l~V~-----~~p~~~~~ 316 (524)
T 2ec8_A 263 H----------------HGDFNYERQATLTISSARVND-SGVFMCYANNT-FGSANVTT---TLEVV-----DKGFINIF 316 (524)
T ss_dssp E----------------CSSSCEEEEEEEEESSCCTTT-CEEEEEEEECS-SCEEEEEE---EEEEE-----SSCEEEEE
T ss_pred c----------------ccCCccceEEEEEECCCCHHH-CEEEEEEEEec-CCceEEEE---EEEEe-----ccCceEee
Confidence 0 011112233689999999999 99999999998 77766666 88888 66666655
Q ss_pred ee---eeeeeecCCeEEEEEEeecCCCCc-eEEEeCCcccccCC-ceEE--------ecceEEEeccCCCCCeEEEEEEE
Q psy14542 228 KH---RILNVKKDESVILPCSAQGNPLPT-IKWYKQDSPVEESD-RIQR--------IGSSLSISHVEESDSGVWNCVAN 294 (371)
Q Consensus 228 ~~---~~~~~~~g~~~~l~C~~~~~p~~~-v~W~~~~~~~~~~~-~~~~--------~~~~l~i~~~~~~d~G~Y~C~a~ 294 (371)
+. ... +..|+.+.|.|.+.|.|.+. +.|++++..+.... ++.. ..+.|.|.++..+|+|.|+|.|.
T Consensus 317 ~~~~~~~~-v~~G~~v~l~C~~~g~P~p~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~ 395 (524)
T 2ec8_A 317 PMINTTVF-VNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVS 395 (524)
T ss_dssp ESSCSEEE-ECTTCCEEEEEEEEEESCCCEEEEESSSCBCSSSBCCEESCCSSSCCEEEEEEEECSCCGGGCEEEEEEEE
T ss_pred cCCCceEE-EcCCCcEEEEEEEeecCCCcEEEEEECCeeccCCccceeEEccCCCceeEEEEEEeecCcccCeEEEEEEE
Confidence 43 344 89999999999999999999 99999999887664 3321 23579999999999999999999
Q ss_pred cCCCCceeEEEEEEecCcccccccceEEEEeeeeccccccccccccccceeeeeecCCeEEEeeeeecCCCCccccC
Q psy14542 295 NSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKYR 371 (371)
Q Consensus 295 n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~ 371 (371)
|..|....++.|.|..+|. +.... ...+| +|.|.+.|+|+|.|+|+
T Consensus 396 N~~g~~~~~~~l~V~~~P~---------i~~~~-------------------~~~~g---~l~C~~~g~P~p~i~W~ 441 (524)
T 2ec8_A 396 NSDVNAAIAFNVYVNTKPE---------ILTYD-------------------RLVNG---MLQCVAAGFPEPTIDWY 441 (524)
T ss_dssp CSSCEEEEEEEEEECEEEE---------EEEEE-------------------CCSSS---CEEEEEEEESCCEEECC
T ss_pred ecCceEEEEEEEEEecCCe---------Eeecc-------------------cCcCc---EEEEEEEeecCCEEEEE
Confidence 9999999999999998888 55111 12255 89999999999999996
No 13
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4
Probab=100.00 E-value=7.1e-39 Score=281.74 Aligned_cols=317 Identities=19% Similarity=0.290 Sum_probs=223.0
Q ss_pred EecccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC--------CeeEEEEccCCcCCCeEEEEE
Q psy14542 6 QVKSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN--------SDEVLVLDRVQREDAGMYQCH 77 (371)
Q Consensus 6 ~v~~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~--------~~~~l~i~~~~~~d~G~Y~C~ 77 (371)
.|..+|.+...|.. +.+.+|+.++|.|.+..+.|.+.+.|+|+|..+... .+++|.|.+++.+|+|.|+|.
T Consensus 2 ~v~~~P~~~~~p~~-~~v~~G~~v~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~ 80 (395)
T 1bih_A 2 PVDKYPVLKDQPAE-VLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLVFLRPQASDEGHYQCF 80 (395)
T ss_dssp ---CCCEECCCCSE-EEEETTSCEEECCCEESCCSSCEEEEEESSSBCCTTTTTEEECTTSCCEEESSCCGGGCEEEEEE
T ss_pred CcCCCCEeecCCCc-eEEeCCCEEEEEEEEecCCCCceEEEEECCcCcccccceEEEecCCceEEEecCCCCCCcEEEEE
Confidence 46678889998887 899999999999966554788999999998876543 457899999999999999999
Q ss_pred EEcCCCCeE-EEEEEEEec-ceeeEecCCceeeecCCcEEEEEEe-cCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcC
Q psy14542 78 VSADDDSAQ-MSAQVILGG-ELVEIASSNQVVVDVGHRIELHCRV-SPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQRE 154 (371)
Q Consensus 78 ~~~~~~~~~-~~~~l~v~~-~~~~~~~~~~~~~~~g~~v~l~C~~-~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~ 154 (371)
+.+..|... ..+.|.|.. ..+.+. .....+.+|+.+.|.|.+ .+.+. +.+.|++++........
T Consensus 81 a~n~~g~~~s~~~~l~v~~~~~p~~~-~~~~~~~~G~~v~l~C~~~~~~p~-~~v~W~~~~~~~~~~~~----------- 147 (395)
T 1bih_A 81 AETPAGVASSRVISFRKTYLIASPAK-THEKTPIEGRPFQLDCVLPNAYPK-PLITWKKRLSGADPNAD----------- 147 (395)
T ss_dssp EEETTEEEECCCEEEEEEEEECCCCE-EEEECCBTTEEEEECCCCCEEESC-CEEEEEEEETTSCGGGC-----------
T ss_pred EEeCCCeEEeEEEEEEEEEeecCCcC-CcceeeeeCCcEEEEecCCCCCCC-CeEEEEecCCCcCcccc-----------
Confidence 998766543 224444431 122221 122333799999999997 56666 89999997611100000
Q ss_pred CCeeEEEEEeCCceeEeccceEEEEEeecCCccc---eeEEEeeccccceeeeeeccceeeeecch-----hccccceee
Q psy14542 155 DAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYR---SYQCRGVNKLTGASLLSVNRGRLSLTENK-----RLLSAAKMF 226 (371)
Q Consensus 155 ~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g---~y~C~~~~~~~~~~~~~~~~~~l~v~~~~-----~~~~p~~~~ 226 (371)
. . ..+.++....++.|.|.+++..| .| .|+|.+.+. .+..........+.+.... ...+|.+
T Consensus 148 ~-~-----~~~~~~~~~~~~~L~i~~v~~~d-~G~~~~Y~C~a~n~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-- 217 (395)
T 1bih_A 148 V-T-----DFDRRITAGPDGNLYFTIVTKED-VSDIYKYVCTAKNA-AVDEEVVLVEYEIKGVTKDNSGYKGEPVPQY-- 217 (395)
T ss_dssp C-C-----CCCTTEEECTTSCEEEEEECGGG-CCSSEEEEEEEECT-TCSSCEEEEEEEECCCBCCSSCCCCCCEEEE--
T ss_pred c-c-----cccccEEEcCCCcEEEEEEeecc-CCCceEEEEEEEec-ccceEEEeeeEEecccccccccccCCcCcee--
Confidence 0 0 00123444455789999999999 99 999999998 5543222200011111100 0012333
Q ss_pred eeeeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccCC--ceEE----ecceEEEeccCCCCCeEEEEEEEcCCCCc
Q psy14542 227 EKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESD--RIQR----IGSSLSISHVEESDSGVWNCVANNSEGQD 300 (371)
Q Consensus 227 ~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~--~~~~----~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~ 300 (371)
.+.... +..|+.+.|.|.+.|.|.+.+.|++++..+.... ++.. .+..|.|.++..+|+|.|+|.|.|..|..
T Consensus 218 ~~~~~~-~~~G~~v~l~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~ 296 (395)
T 1bih_A 218 VSKDMM-AKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKP 296 (395)
T ss_dssp ECCSEE-EETTSCEEEEEEEECSSCCCCEEEETTEECCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSSC
T ss_pred cCCceE-EECCCcEEEEEEeccCCCCeEEEEECCEEcCCCCceeEEEEecCCCceEEEccCChhhCEEEEEEEEeCCCCc
Confidence 233344 8999999999999999999999999998876542 2221 12379999999999999999999999997
Q ss_pred ee-EEEEEEecCcccccccceEEEEeeeeccccccccccccccceeeeeecCCeEEEeeeeecCCCCccccC
Q psy14542 301 KM-QLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKYR 371 (371)
Q Consensus 301 ~~-~~~l~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~ 371 (371)
.. .+.|.|..+|. +. ..|.. . ..+.+|+.++|.|.+.|.|+|.++|+
T Consensus 297 ~~~~~~l~V~~~P~---------~~--~~~~~-~------------~~~~~g~~~~l~C~~~g~p~p~v~W~ 344 (395)
T 1bih_A 297 QKHSLKLTVVSAPK---------YE--QKPEK-V------------IVVKQGQDVTIPCKVTGLPAPNVVWS 344 (395)
T ss_dssp EEEEEEEEEEEEEE---------EE--ECCCS-E------------EEECTTSCEEEECEEEEESCCCCEEE
T ss_pred eEEEEEEEEEcCCc---------cc--cCCCc-c------------eEecCCCeEEEEEEECcccCCeeEEE
Confidence 65 89999998888 55 22221 0 26789999999999999999999995
No 14
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Probab=100.00 E-value=3.7e-38 Score=287.15 Aligned_cols=305 Identities=17% Similarity=0.235 Sum_probs=227.9
Q ss_pred eEEecccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEE-eeCCeeEEEEccCCcCCCeEEEEEEEcCC
Q psy14542 4 FIQVKSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVL-RRNSDEVLVLDRVQREDAGMYQCHVSADD 82 (371)
Q Consensus 4 ~~~v~~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~-~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~ 82 (371)
.+.|..+|.+...+.. ..+.+|++++|.|.+. + .+.|+|++..+ ......+|.|.+++.+|+|.|+|.+.+
T Consensus 30 ~l~v~~pP~i~~~~~~-~~v~~G~~v~l~C~~~-~----~v~W~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n-- 101 (524)
T 2ec8_A 30 SPGEPSPPSIHPGKSD-LIVRVGDEIRLLCTDP-G----FVKWTFEILDETNENKQNEWITEKAEATNTGKYTCTNKH-- 101 (524)
T ss_dssp ---CCCCCEEESCCSE-EECCTTSCEEEEEECT-T----EEEEEEESSSCCEEECSSEEEESSCCSTTCEEEEEEETT--
T ss_pred EcCCCCCCccCCCCce-EEEeCCCeEEEEEeCC-c----eEEEcCCCccccccCccceEEEcccchhhCEEEEEeecC--
Confidence 4455667777776666 8899999999999654 2 89999988754 222668899999999999999999988
Q ss_pred CCeEEEEEEEEecceeeEecCCceeeecCCcEEEEEEecCCCCCceEEEee-CCEEeeeCCeeEEEEcccCcCCCeeEEE
Q psy14542 83 DSAQMSAQVILGGELVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLK-DGLVLRRNSDEVLVLDRVQREDAGMYQC 161 (371)
Q Consensus 83 ~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~-~~~~~~~~~~~~~~~~~~~~~~~g~y~~ 161 (371)
| ....+.|.|...+..+.......+.+|+.++|.|.+.+.+. +.+.|++ ++..+....
T Consensus 102 g-~~~~~~l~V~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~~-~~v~W~~~~g~~l~~~~------------------- 160 (524)
T 2ec8_A 102 G-LSNSIYVFVRDPAKLFLVDRSLYGKEDNDTLVRCPLTDPEV-TNYSLKGCQGKPLPKDL------------------- 160 (524)
T ss_dssp S-CEEEEEEECCCSSCSBCCCCCCCEETTSCEEECCCBSCCCC-SCEEEECSSSCCCCSSC-------------------
T ss_pred C-cceEEEEEECCCCcccccccceEEEcCCeEEEECcCCCCcc-ceEEEEccCCcCcCCCC-------------------
Confidence 3 37778888874333333333444589999999999988664 8999988 676654432
Q ss_pred EEeCCceeEeccceEEEEEeecCCccc-eeEEEeeccccceee-eeeccceeeeecchhccccceeeeeeeeeeeecCCe
Q psy14542 162 HIEDGKYHMLSSGELIIHQVDESDRYR-SYQCRGVNKLTGASL-LSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDES 239 (371)
Q Consensus 162 ~~~~~~~~~~~~~~l~i~~~~~~d~~g-~y~C~~~~~~~~~~~-~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~ 239 (371)
++....+..|.|.+++.+| .| .|+|.+.+. .+... ... .|.|.... ..+|.+...+.... +..|+.
T Consensus 161 -----~~~~~~~~~L~i~~~~~~d-~G~~Y~C~a~n~-~~~~~s~~~---~l~V~~~~-~~~p~i~~~~~~~~-v~~G~~ 228 (524)
T 2ec8_A 161 -----RFIPDPKAGIMIKSVKRAY-HRLCLHCSVDQE-GKSVLSEKF---ILKVRPAF-KAVPVVSVSKASYL-LREGEE 228 (524)
T ss_dssp -----EEEEETTTEEEEESCCGGG-TTCEEEEEEC-----CCCCCCE---ECCEECCC-CSCCEEECSCSEEE-EETTSC
T ss_pred -----ceeECCCccEEEeccchhh-CCceEEEEEEEC-CceEEEEEE---EEEEEeCC-CCCCcEEecCCcce-EEcCCc
Confidence 3333344689999999999 99 999999987 44332 233 55554211 15677766666666 999999
Q ss_pred EEEEEEeecCCCCc-eEEEeCCccc--ccCCce-------EEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEe
Q psy14542 240 VILPCSAQGNPLPT-IKWYKQDSPV--EESDRI-------QRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYA 309 (371)
Q Consensus 240 ~~l~C~~~~~p~~~-v~W~~~~~~~--~~~~~~-------~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 309 (371)
+.|.|.+.+.|.+. +.|++++..+ ....+. ....+.|.|.++..+|+|.|+|.|.|..|.....+.|.|.
T Consensus 229 v~L~C~~~g~p~p~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~ 308 (524)
T 2ec8_A 229 FTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVV 308 (524)
T ss_dssp EEEEEEEEESSTTCEEEEEETTCSCCCCEEEEEEECSSSCEEEEEEEEESSCCTTTCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred EEEEEEEecCCCcEEEEEEeCCCCCccccccccccccCCccceEEEEEECCCCHHHCEEEEEEEEecCCceEEEEEEEEe
Confidence 99999999998887 9999999873 332221 2335689999999999999999999999999889999999
Q ss_pred cCcccccccceEEEEeeeeccccccccccccccceeeeeecCCeEEEeeeeecCCCCc-cccC
Q psy14542 310 HGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPT-IKYR 371 (371)
Q Consensus 310 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~-i~W~ 371 (371)
.+|. +. ..|.. +....+.+|+.+.|.|.+.|+|+|. ++|+
T Consensus 309 ~~p~---------~~--~~~~~-----------~~~~~v~~G~~v~l~C~~~g~P~p~~v~W~ 349 (524)
T 2ec8_A 309 DKGF---------IN--IFPMI-----------NTTVFVNDGENVDLIVEYEAFPKPEHQQWI 349 (524)
T ss_dssp SSCE---------EE--EEESS-----------CSEEEECTTCCEEEEEEEEEESCCCEEEEE
T ss_pred ccCc---------eE--eecCC-----------CceEEEcCCCcEEEEEEEeecCCCcEEEEE
Confidence 9888 55 22111 1123788999999999999999999 9996
No 15
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}
Probab=100.00 E-value=1.5e-37 Score=263.48 Aligned_cols=272 Identities=21% Similarity=0.318 Sum_probs=201.8
Q ss_pred cccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC----------CeeEEEEccCCc-CCCeEEEE
Q psy14542 8 KSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN----------SDEVLVLDRVQR-EDAGMYQC 76 (371)
Q Consensus 8 ~~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~----------~~~~l~i~~~~~-~d~G~Y~C 76 (371)
..+|.+...|.. ..+.+|+.++|.|.+ .+.|.+.+.|+++|..+... ....|.|.+++. +|+|.|+|
T Consensus 4 ~~~P~~~~~p~~-~~v~~G~~v~l~C~~-~g~p~~~i~W~k~g~~i~~~~~~~~~~~~~~~~~L~i~~~~~~~D~G~Y~C 81 (304)
T 2yd9_A 4 EEPPRFIKEPKD-QIGVSGGVASFVCQA-TGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQPLRTPRDENVYEC 81 (304)
T ss_dssp CCCCEEEECCCC-EEEETTSCEEEEEEE-ECSSCCEEEEC-------CTTEEEEEETTTTEEEEEECSCCTTTTCSEEEE
T ss_pred ccCCeeeecCCc-eEecCCCeEEEEEEE-EEeCCCeEEEEECCEECCCCceEEEEecCCCceEEEEecccccCCCeEEEE
Confidence 457888888888 899999999999965 56788899999998877543 237899999998 99999999
Q ss_pred EEEcCCCCeEEEEEEEEecce------eeEecCCce-eeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEc
Q psy14542 77 HVSADDDSAQMSAQVILGGEL------VEIASSNQV-VVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLD 149 (371)
Q Consensus 77 ~~~~~~~~~~~~~~l~v~~~~------~~~~~~~~~-~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~ 149 (371)
.+.+..+.....+.|.|...+ |.+...+.. .+..|+.+.|.|.+.+.+. +.+.|++++..+.....
T Consensus 82 ~a~n~~g~~~~~~~l~V~~~~~~p~~~p~i~~~~~~~~v~~g~~v~l~C~~~g~p~-~~v~W~k~~~~~~~~~~------ 154 (304)
T 2yd9_A 82 VAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPD-PEITWFKDFLPVDPSAS------ 154 (304)
T ss_dssp EEECSSCEECCEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEECCEEECSSC-CEEEEEETTEECCGGGG------
T ss_pred EEECCCCeEEEEEEEEEeccccCCCCCCeeecCCccEEEeCCCeEEEEEECccCCC-CeEEEEECCEECcCCCC------
Confidence 999988887778888887331 455544443 4488999999999998877 89999999988765321
Q ss_pred ccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeee-eccceeeeecchhccccceeeee
Q psy14542 150 RVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLS-VNRGRLSLTENKRLLSAAKMFEK 228 (371)
Q Consensus 150 ~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~-~~~~~l~v~~~~~~~~p~~~~~~ 228 (371)
..+.....++.|.|.++..+| .|.|+|.+.|. .|..... . .+.|... ..+|.+...+
T Consensus 155 ---------------~~~~~~~~~~~L~i~~~~~~d-~G~Y~C~a~n~-~g~~~~~~~---~l~v~~~--~~~P~~~~~~ 212 (304)
T 2yd9_A 155 ---------------NGRIKQLRSGALQIESSEETD-QGKYECVATNS-AGVRYSSPA---NLYVRVQ--NVAPRFSILP 212 (304)
T ss_dssp ---------------TTSEEECTTSCEEECSCCGGG-CEEEEEEEEET-TEEEECCCE---EEEEECC--CEEEEEEECC
T ss_pred ---------------cceEEeCCCeEEEEccCCccc-CEEEEEEEEeC-CCCEEeccE---EEEEEee--ccCCcEEecC
Confidence 112223344689999999999 99999999998 6544332 2 4444321 1456666666
Q ss_pred eeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEE
Q psy14542 229 HRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQY 308 (371)
Q Consensus 229 ~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 308 (371)
.... +..|+.+.|.|.+.|.|.+.+.|++++..+....++......|.|.++ +|+|.|+|.|.|..|....++.|.|
T Consensus 213 ~~~~-v~~G~~v~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~L~i~~~--~d~G~Y~C~a~N~~G~~~~~~~l~V 289 (304)
T 2yd9_A 213 MSHE-IMPGGNVNITCVAVGSPMPYVKWMQGAEDLTPEDDMPVGRNVLELTDV--KDSANYTCVAMSSLGVIEAVAQITV 289 (304)
T ss_dssp CCBC-CCTTCCEEEEEEEEEESCCEEEEEETTEECSCSSSCCBSEEEEEECSC--CSCEEEEEEEEETTEEEEEEEEEC-
T ss_pred CceE-EcCCCeEEEEEEEeeeCCCEEEEEECCEECCCcccccCCcEEEEEccc--ccCEEEEEEEEeCCCcEEEEEEEEE
Confidence 6655 899999999999999999999999999988776554333334666555 6999999999999999999999999
Q ss_pred ecCcc
Q psy14542 309 AHGKY 313 (371)
Q Consensus 309 ~~~p~ 313 (371)
..++.
T Consensus 290 ~~~~~ 294 (304)
T 2yd9_A 290 KSLPK 294 (304)
T ss_dssp -----
T ss_pred ecCcc
Confidence 98877
No 16
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A
Probab=100.00 E-value=2.3e-38 Score=277.20 Aligned_cols=307 Identities=23% Similarity=0.374 Sum_probs=223.3
Q ss_pred ccceEEEeCCCcEEE---eccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC-------CeeEEEEccCCc-CCCeEEEEE
Q psy14542 9 SSLSIEMSPSGQVVV---DVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN-------SDEVLVLDRVQR-EDAGMYQCH 77 (371)
Q Consensus 9 ~~~~~~~~p~~~~~~---~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~-------~~~~l~i~~~~~-~d~G~Y~C~ 77 (371)
.+|.|...|.. ..+ .+|+.++|.|.+ .+.|.+.+.|+|+|..+... .+++|.|.++.. +|+|.|+|.
T Consensus 3 ~~P~~~~~p~~-~~~~~~~~g~~v~l~C~~-~g~p~~~v~W~k~g~~~~~~~~~~~~~~~~~L~i~~~~~~~D~G~Y~C~ 80 (382)
T 1cs6_A 3 YGPVFEEQPAH-TLFPEGSAEEKVTLTCRA-RANPPATYRWKMNGTELKMGPDSRYRLVAGDLVISNPVKAKDAGSYQCV 80 (382)
T ss_dssp EEEEEEECCCC-EEEETTCSCCEEEECCEE-EEESCCEEEEEETTEECCCSTTSSEEEETTEEEEESCCHHHHCEEEEEE
T ss_pred CCCEEEECCCc-EEEecCCCCCcEEEEEEe-cCCCCCEEEEEECCEECCcCCCccEEeeCCeEEEecccccccCEEEEEE
Confidence 46888899988 555 789999999965 46678899999999987643 345799999997 999999999
Q ss_pred EEcCCCCeE-EEEEEEEecceeeEec--CCceeeecCCcEEEEEEecCC-CCCceEEEeeCCEEeeeCCeeEEEEcccCc
Q psy14542 78 VSADDDSAQ-MSAQVILGGELVEIAS--SNQVVVDVGHRIELHCRVSPK-RLSSAKAWLKDGLVLRRNSDEVLVLDRVQR 153 (371)
Q Consensus 78 ~~~~~~~~~-~~~~l~v~~~~~~~~~--~~~~~~~~g~~v~l~C~~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~ 153 (371)
+.+..|... ..+.|.|. ..+.+.. .....+.+|+.+.|.|.+... +. +.+.|++++..+.....
T Consensus 81 a~n~~g~~~s~~~~l~v~-~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~-~~i~W~~~~~~~~~~~~---------- 148 (382)
T 1cs6_A 81 ATNARGTVVSREASLRFG-FLQEFSAEERDPVKITEGWGVMFTCSPPPHYPA-LSYRWLLNEFPNFIPAD---------- 148 (382)
T ss_dssp EEETTEEEECCCEEEEEE-EECCCCSSCCCCEEEETTSCEEECCCCCSEESC-CEEEEEESSTTCBCCCC----------
T ss_pred EEcCCcEEEecceEEEee-ccccccccCCCceEEecCCcEEEEeCCCCCCCC-cEEEEEECCCccccccC----------
Confidence 998776542 23555555 2222222 233445899999999997543 44 89999998865432110
Q ss_pred CCCeeEEEEEeCCcee-EeccceEEEEEeecCCccceeEEEeeccccceeeeee--ccceeeeecc-hhccccceeee-e
Q psy14542 154 EDAGMYQCHIEDGKYH-MLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSV--NRGRLSLTEN-KRLLSAAKMFE-K 228 (371)
Q Consensus 154 ~~~g~y~~~~~~~~~~-~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~--~~~~l~v~~~-~~~~~p~~~~~-~ 228 (371)
++.. ...++.|.|.+++.+| .|.|+|.+.+. .+...... ....+.+... ....+|.+... +
T Consensus 149 ------------~~~~~~~~~~~L~i~~~~~~d-~G~Y~C~~~n~-~g~~~~~~~s~~~~l~v~~~~~~~~~P~~~~~~~ 214 (382)
T 1cs6_A 149 ------------GRRFVSQTTGNLYIAKTEASD-LGNYSCFATSH-IDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFP 214 (382)
T ss_dssp ------------SSEEECTTTCCEEESSCCGGG-CEEEEEEEEEE-ETTEEEEEECCCEEEEEESCCCCCEEEEEEECCC
T ss_pred ------------ceEEEecCceEEEEEeeCccc-CeeEEEEEEEc-cccccceeEccceeeccchhhcccCCCceeccCC
Confidence 1111 1123679999999999 99999999987 43221111 1113333311 01134555443 3
Q ss_pred eeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEE
Q psy14542 229 HRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQY 308 (371)
Q Consensus 229 ~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 308 (371)
.... +..|+.+.|.|.+.+.|.+.+.|++++..+.. +....+..|.|.++..+|+|.|+|.|.|..|.....+.|.|
T Consensus 215 ~~~~-~~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~--~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V 291 (382)
T 1cs6_A 215 ADTY-ALTGQMVTLECFAFGNPVPQIKWRKLDGSQTS--KWLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIII 291 (382)
T ss_dssp SEEE-EETTCCEEEECEEEEESCCEEEEEECCSCCSC--CCSBSSSEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred CceE-EeCCCeEEEEEEEccCCCCEEEEEECCccccc--EEecCCcEEEEccCChhhCEEEEEEEEcCCCeEEEEEEEEE
Confidence 3444 89999999999999999999999999887653 23345678999999999999999999999999999999999
Q ss_pred ecCcccccccceEEEEeeeeccccccccccccccceeeeeecCCeEEEeeeeecCCCCccccC
Q psy14542 309 AHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKYR 371 (371)
Q Consensus 309 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~ 371 (371)
..+|. +. ..+. ...+.+|+.++|.|.+.|.|+|.++|+
T Consensus 292 ~~~p~---------~~--~~~~--------------~~~~~~g~~~~l~C~~~g~p~p~v~W~ 329 (382)
T 1cs6_A 292 HAQPD---------WL--DVIT--------------DTEADIGSDLRWSCVASGKPRPAVRWL 329 (382)
T ss_dssp EEEEE---------EE--ECCC--------------CEEEETTCCEEEECEEEEESCCEEEEE
T ss_pred ecCCC---------cc--cCCC--------------ccEEcCCCeEEEEEEeeeecCCEEEEE
Confidence 98887 44 1111 126789999999999999999999995
No 17
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A
Probab=100.00 E-value=4.7e-37 Score=258.76 Aligned_cols=266 Identities=22% Similarity=0.417 Sum_probs=206.5
Q ss_pred cceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEe-CCEEEeeC-----------CeeEEEEccCCcCCCeEEEEE
Q psy14542 10 SLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLK-DGLVLRRN-----------SDEVLVLDRVQREDAGMYQCH 77 (371)
Q Consensus 10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~-~~~~~~~~-----------~~~~l~i~~~~~~d~G~Y~C~ 77 (371)
++.+.+.|.. ..+.+|++++|.|.+....+.+.+.|++ +|..+... ...+|.|.+++.+|+|.|+|.
T Consensus 2 ~~~v~~~p~~-~~v~~G~~v~l~C~~~~~~~~~~i~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~ 80 (291)
T 1qz1_A 2 VLQVDIVPSQ-GEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCV 80 (291)
T ss_dssp CCCEEEESSS-EEEETTCCEEEEEEESSCCSCCEEEEECTTSCBCCSSCSSEEEEEEETTEEEEEECSCCGGGCEEEEEE
T ss_pred CcceEecCCC-ceEeCCCeEEEEEEeCCCCCCcEeEEECCCCeECccCCceEEEEEcCCCeEEEEEecCCCCCCEEEEEE
Confidence 5778899998 8999999999999765544478999999 77655422 456899999999999999999
Q ss_pred EEcCCCC-eEEEEEEEEecceeeEecCC-ceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCC
Q psy14542 78 VSADDDS-AQMSAQVILGGELVEIASSN-QVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQRED 155 (371)
Q Consensus 78 ~~~~~~~-~~~~~~l~v~~~~~~~~~~~-~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~ 155 (371)
+.+..+. ....+.|.|. .++.+...+ ...+.+|+.+.|.|.+.+.+. +.+.|++++..+....
T Consensus 81 ~~n~~g~~~~~~~~l~v~-~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~-~~v~W~~~~~~~~~~~------------- 145 (291)
T 1qz1_A 81 VTAEDGTQSEATVNVKIF-QKLMFKNAPTPQEFKEGEDAVIVCDVVSSLP-PTIIWKHKGRDVILKK------------- 145 (291)
T ss_dssp EECTTSCEEEEEEEEEEE-CCSEEEECCSSEEEETTSCEEECCEEECSSC-CEEEEEETTSCSSTTC-------------
T ss_pred EEcCCCCeeEEEEEEEee-ccccccCCCCcccccCCCeEEEEEEeccCCC-CEEEEEECCEEcccCC-------------
Confidence 9988754 4577888888 455555444 344589999999999998877 8999999987665432
Q ss_pred CeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeecccccee-eeeeccceeeeecchhccccceeeee--eeee
Q psy14542 156 AGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGAS-LLSVNRGRLSLTENKRLLSAAKMFEK--HRIL 232 (371)
Q Consensus 156 ~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~-~~~~~~~~l~v~~~~~~~~p~~~~~~--~~~~ 232 (371)
+.++....+..|.|.++..+| .|.|+|.+.+...+.. .... .+.|. .+|.+.... ....
T Consensus 146 ---------~~~~~~~~~~~L~i~~~~~~d-~G~Y~C~a~n~~~~~~~~~~~---~l~v~-----~~p~~~~~~~~~~~~ 207 (291)
T 1qz1_A 146 ---------DVRFIVLSNNYLQIRGIKKTD-EGTYRCEGRILARGEINFKDI---QVIVN-----VPPTVQARQSIVNAT 207 (291)
T ss_dssp ---------CTTEEECTTSCEEETTCCGGG-CEEEEEEEEEGGGTEEEEEEE---EEEEE-----EEEEEEESCSEEEEE
T ss_pred ---------CceEEEccCCcEEEccCcccc-CeEEEEEEEecCCCceeeEEE---EEEEe-----cCCcccccccccccc
Confidence 123333445689999999999 9999999998733332 2233 55565 555555432 2334
Q ss_pred eeecCCeEEEEEEeecCCCCceEEEeCCcccccCC----ceEE--ecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEE
Q psy14542 233 NVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESD----RIQR--IGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFI 306 (371)
Q Consensus 233 ~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~----~~~~--~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 306 (371)
+..|+.+.|.|.+.|.|.|.+.|++++..+.... ++.. .++.|.|.++..+|+|.|+|.|.|..|.....+.|
T Consensus 208 -~~~g~~v~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l 286 (291)
T 1qz1_A 208 -ANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHL 286 (291)
T ss_dssp -TTSCCCEEEEEEEEEESCCEEEEEETTEECCCC--CCSSEEECTTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred -cccCceEEEEEEEEEeCCCcEEEEECCEECcCCCCCCcceEEcCCCcEEEEEecChhcCEEEEEEEEeCCCceEEEEEE
Confidence 8899999999999999999999999999887664 3332 24579999999999999999999999999999999
Q ss_pred EEec
Q psy14542 307 QYAH 310 (371)
Q Consensus 307 ~v~~ 310 (371)
.|.+
T Consensus 287 ~V~~ 290 (291)
T 1qz1_A 287 KVFA 290 (291)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 8865
No 18
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Probab=100.00 E-value=1.9e-36 Score=282.59 Aligned_cols=293 Identities=17% Similarity=0.262 Sum_probs=219.1
Q ss_pred cceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC-------CeeEEEEccCCcCCCeEEEEEEEcCC
Q psy14542 10 SLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN-------SDEVLVLDRVQREDAGMYQCHVSADD 82 (371)
Q Consensus 10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~-------~~~~l~i~~~~~~d~G~Y~C~~~~~~ 82 (371)
+|.+...+ . ..+.+|+.+.|.|.+. + |.+.+.|+++|..+... ....|.|.+++.+|+|.|+|.+.+..
T Consensus 112 ~p~i~~~~-~-~~v~~g~~v~l~C~~~-~-p~~~v~W~~~g~~l~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~ 187 (642)
T 1e07_A 112 KPSISSNN-S-KPVEDKDAVAFTCEPE-T-QDATYLWWVNNQSLPVSPRLQLSNGNRTLTLFNVTRNDTASYKCETQNPV 187 (642)
T ss_pred CCcEEccC-c-eeEecCCcEEEEEECC-C-CCeeEEEEECCeECCCCCceEEcCCCCEEEEeCCCcccCeeEEEEEecCC
Confidence 45555433 2 5688999999999654 4 78899999999887643 45689999999999999999999877
Q ss_pred CCe-EEEEEEEEecceeeEecCC-ceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEE
Q psy14542 83 DSA-QMSAQVILGGELVEIASSN-QVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQ 160 (371)
Q Consensus 83 ~~~-~~~~~l~v~~~~~~~~~~~-~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~ 160 (371)
+.. +..+.|.|...+..+...+ ...+.+|+.+.|.|.+.+.|. +.+.|+++|..+...
T Consensus 188 ~~~~s~~~~l~V~~~p~~~~~~~~~~~~~~G~~~~l~C~~~g~p~-~~i~W~~~g~~i~~~------------------- 247 (642)
T 1e07_A 188 SARRSDSVILNVLYGPDAPTISPLNTSYRSGENLNLSCHAASNPP-AQYSWFVNGTFQQST------------------- 247 (642)
T ss_pred CCcccceEEEEEEeCCCCcEEecCCcccccCCEEEEEEEcCCCCC-cEEEEEECCeEcccC-------------------
Confidence 654 4567777773333322222 334589999999999988777 899999998876322
Q ss_pred EEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeE
Q psy14542 161 CHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESV 240 (371)
Q Consensus 161 ~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~ 240 (371)
..|.|.++..+| .|.|+|.+.|. .+....+. ...+.|... ..+|.+... . ...+..|+.+
T Consensus 248 -------------~~L~i~~~~~~d-~G~Y~C~a~n~-~g~~~~s~-~~~v~v~~~--~~~p~i~~~-~-~~~~~~g~~v 307 (642)
T 1e07_A 248 -------------QELFIPNITVNN-SGSYTCQAHNS-DTGLNRTT-VTTITVYAE--PPKPFITSN-N-SNPVEDEDAV 307 (642)
T ss_pred -------------CceEEecccccC-CeEEEEEEEeC-CCceEEee-eEEEEEEcc--CCCCEEEcC-C-ceeEecCCcE
Confidence 568999999999 99999999998 55443332 114444421 123333322 2 2226668889
Q ss_pred EEEEEeecCCCCceEEEeCCcccccCCceEE--ecceEEEeccCCCCCeEEEEEEEcCCCCc-eeEEEEEEecCcccccc
Q psy14542 241 ILPCSAQGNPLPTIKWYKQDSPVEESDRIQR--IGSSLSISHVEESDSGVWNCVANNSEGQD-KMQLFIQYAHGKYHMLS 317 (371)
Q Consensus 241 ~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~v~~~p~~~~~ 317 (371)
.|.|.+.+.| +.+.|+++|..+..+.++.. .++.|.|.++..+|+|.|+|.|.|..|.. +..+.|.|..+|.
T Consensus 308 ~l~C~~~~~p-~~v~W~~~g~~l~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~p~---- 382 (642)
T 1e07_A 308 ALTCEPEIQN-TTYLWWVNNQSLPVSPRLQLSNDNRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPD---- 382 (642)
T ss_pred EEEEECCCCC-ccEEEEECCccCCCcCCEEEeCCCCEEEEeccCcccCeeEEEEEeCCCCCcceeeEEEEEEcCCC----
Confidence 9999999876 69999999998877766653 45789999999999999999999999874 4568888887776
Q ss_pred cceEEEEeeeeccccccccccccccceeeeeecCCeEEEeeeeecCCCCccccC
Q psy14542 318 SGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKYR 371 (371)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~ 371 (371)
...+ .|. ...+.+|+.++|.|.+.|.|+|.++|+
T Consensus 383 -----~~~~-~~~--------------~~~~~~g~~~~l~C~~~g~p~~~i~W~ 416 (642)
T 1e07_A 383 -----DPTI-SPS--------------YTYYRPGVNLSLSCHAASNPPAQYSWL 416 (642)
T ss_pred -----CCee-cCC--------------ceEecCCCcEEEEEEcCccCCCeEEEE
Confidence 2111 111 126779999999999999999999996
No 19
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}
Probab=100.00 E-value=1e-36 Score=256.68 Aligned_cols=268 Identities=22% Similarity=0.422 Sum_probs=202.6
Q ss_pred ccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEe-CCEEEeeC---------CeeEEEEccCCcCCCeEEEEEE
Q psy14542 9 SSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLK-DGLVLRRN---------SDEVLVLDRVQREDAGMYQCHV 78 (371)
Q Consensus 9 ~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~-~~~~~~~~---------~~~~l~i~~~~~~d~G~Y~C~~ 78 (371)
.+|.+.+.|.. ..+.+|+.++|.|.+. +.|. .+.|++ ++..+... ...+|.|.+++.+|+|.|+|.+
T Consensus 3 ~~p~v~~~~~~-~~v~~G~~v~l~C~~~-~~p~-~v~W~~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~ 79 (291)
T 2wim_A 3 ALLQVTISLSK-VELSVGESKFFTCTAI-GEPE-SIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQA 79 (291)
T ss_dssp CCCEEEESCSE-EEEETTCCEEEEEEEE-SCCS-EEECBCTTCCBCCCBTTEEEEEETTEEEEEECSCCGGGCEEEEEEE
T ss_pred CCceEEEeccc-eEecCCCcEEEEEEEe-CCCC-ceEEECCCCcCccCCCcEEEecCCCEEEEEEccCCcccCEEEEEEE
Confidence 46788888888 8999999999999654 4453 899999 66554332 3468999999999999999999
Q ss_pred EcCCCCe-EEEEEEEEecceeeEecCC-ceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCC
Q psy14542 79 SADDDSA-QMSAQVILGGELVEIASSN-QVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDA 156 (371)
Q Consensus 79 ~~~~~~~-~~~~~l~v~~~~~~~~~~~-~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (371)
.+..+.. ...+.|.|. .++.+...+ ...+.+|+.+.|.|.+.+.+. +.+.|++++..+....
T Consensus 80 ~n~~g~~~~~~~~l~v~-~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~-~~v~W~~~~~~~~~~~-------------- 143 (291)
T 2wim_A 80 TDAKGQTQEATVVLEIY-QKLTFREVVSPQEFKQGEDAEVVCRVSSSPA-PAVSWLYHNEEVTTIS-------------- 143 (291)
T ss_dssp ECSSSCEEEEEEEEEEE-CCCBCCSCCCSEEEETTSCEEECCCCBCSSC-CEEEEECC----CBCC--------------
T ss_pred ecccCceEEEEEEEEec-CCcceEeCCCChhhcCCCCEEEEEEEccCCC-CEEEEEECCccccccC--------------
Confidence 9987766 467788887 444444333 344589999999999998877 8999999988765432
Q ss_pred eeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeecccccee-eeeeccceeeeecchhccccceeeeee--eeee
Q psy14542 157 GMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGAS-LLSVNRGRLSLTENKRLLSAAKMFEKH--RILN 233 (371)
Q Consensus 157 g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~-~~~~~~~~l~v~~~~~~~~p~~~~~~~--~~~~ 233 (371)
..++....+..|.|.++...| .|.|+|.+.+...+.. .... .+.+. .+|.+..... ...
T Consensus 144 --------~~~~~~~~~~~L~i~~v~~~d-~G~Y~C~~~n~~~~~~~~~~~---~~~v~-----~~p~~~~~~~~~~~~- 205 (291)
T 2wim_A 144 --------DNRFAMLANNNLQILNINKSD-EGIYRCEGRVEARGEIDFRDI---IVIVN-----VPPAISMPQKSFNAT- 205 (291)
T ss_dssp --------CSSEEECTTSCEEETTCCGGG-CEEEEEEEEETTTTEEEEEEE---EEEEE-----BCCCCBCSCSEEECC-
T ss_pred --------CceEEEccCCCEEEEecchhh-CEEEEEEEEECCCCeeEEeeE---EEEec-----cCCccccCcccccce-
Confidence 124444445789999999999 9999999998732322 2222 45555 4555544332 233
Q ss_pred eecCCeEEEEEEeecCCCCceEEEeCCcccccCCceEE--ecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEecC
Q psy14542 234 VKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQR--IGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHG 311 (371)
Q Consensus 234 ~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~ 311 (371)
+..|+.+.|.|.+.|.|.+.+.|+++|..+..+.++.. .++.|.|.++..+|+|.|+|.|.|..|....++.|.|..+
T Consensus 206 ~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~ 285 (291)
T 2wim_A 206 AERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQ 285 (291)
T ss_dssp SSSCCEEEEECBCCCBSCCEEEEEETTEECCCTTTEEECSTTCEEEEESCCSTTCEEEEEEEEETTEEEEEEEEEEC---
T ss_pred ecCCCeEEEEEEeecCCCCeEEEEECCEECcCCccEEEcCCccEEEEeeCCcccCEEEEEEEEECCCceeeeEEEEEEEe
Confidence 78899999999999999999999999999887776654 3468999999999999999999999999999999999987
Q ss_pred cc
Q psy14542 312 KY 313 (371)
Q Consensus 312 p~ 313 (371)
+.
T Consensus 286 ~~ 287 (291)
T 2wim_A 286 HH 287 (291)
T ss_dssp --
T ss_pred cc
Confidence 76
No 20
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}
Probab=100.00 E-value=1.7e-36 Score=267.28 Aligned_cols=273 Identities=23% Similarity=0.371 Sum_probs=218.4
Q ss_pred eeEEecccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC---------CeeEEEEccCCcCCCeE
Q psy14542 3 LFIQVKSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN---------SDEVLVLDRVQREDAGM 73 (371)
Q Consensus 3 ~~~~v~~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~---------~~~~l~i~~~~~~d~G~ 73 (371)
+.+.+..++.+...+.. ..+.+|+++.|.|.+ .+.|.+.+.|++++..+... ...+|.|.+++.+|+|.
T Consensus 114 ~~l~v~~p~~~~~~~~~-~~~~~G~~v~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~ 191 (403)
T 3laf_A 114 AKVMVAGPLRFLSQTES-ITAFMGDTVLLKCEV-IGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGALQISRLQPGDSGV 191 (403)
T ss_dssp EEEEECCCCEECSCCCC-EEEETTSCEEECCCE-ECSSCCEEEEEESSSBCCCCTTCCSEEECTTSCEEECSCCGGGCEE
T ss_pred EEEEecCCCccccCCCc-EEEEcCCeEEEEEEE-cccCCCeEEEEECCEeccccCCceEEEEcCCceEEEcccccccCEE
Confidence 45666667777666666 899999999999954 56678899999998776422 45689999999999999
Q ss_pred EEEEEEcCCCCe-EEEEEEEEecce-----eeEecCC-ceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEE
Q psy14542 74 YQCHVSADDDSA-QMSAQVILGGEL-----VEIASSN-QVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVL 146 (371)
Q Consensus 74 Y~C~~~~~~~~~-~~~~~l~v~~~~-----~~~~~~~-~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~ 146 (371)
|+|.+.+..+.. ...+.|.|...+ +.+...+ ...+.+|+.++|.|.+.+.+. +.+.|++++..+....
T Consensus 192 Y~C~~~n~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~-~~~~W~~~~~~~~~~~---- 266 (403)
T 3laf_A 192 YRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPP-PSFTWLRGEEVIQLRS---- 266 (403)
T ss_dssp EEEEEECSSCCCBCCCEEEEEECCCCCCEEEEEEECCCCEEEETTSCEEECCEEEEESC-CEEEEEETTEECCCSS----
T ss_pred EEEEEEcCCCceeccceeEEEecCCCcccCceEecCCCceEecCCCcEEEEEEcCCCCC-CeEEEEECCeeccCCC----
Confidence 999999877653 344566665222 1222233 344589999999999998877 7999999998776542
Q ss_pred EEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceee
Q psy14542 147 VLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMF 226 (371)
Q Consensus 147 ~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~ 226 (371)
.++....+..|.|.++..+| .|.|+|.+.|. .+...... .+.|. .+|.+..
T Consensus 267 -------------------~~~~~~~~~~L~i~~~~~~d-~G~Y~C~a~n~-~g~~~~~~---~l~V~-----~~p~~~~ 317 (403)
T 3laf_A 267 -------------------KKYSLLGGSNLLISNVTDDD-SGTYTCVVTYK-NENISASA---ELTVL-----VPPWFLN 317 (403)
T ss_dssp -------------------SSEEEETTTEEEECSCCGGG-CEEEEEEEEET-TEEEEEEE---EEEEE-----EEEEEEE
T ss_pred -------------------ceEEECCccEEEEeCCCHHH-CEEEEEEEEcC-CCceEEEE---EEEEE-----CCCcEee
Confidence 13333344789999999999 99999999998 77776666 88887 6777777
Q ss_pred eeeeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccCCceE-EecceEEEeccCCCCCeEEEEEEEcCCCCceeEEE
Q psy14542 227 EKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQ-RIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLF 305 (371)
Q Consensus 227 ~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 305 (371)
.+.... +..|+.+.|.|.+.|.|.+.+.|+++|..+....++. ..++.|.|.++..+|+|.|+|.|.|..|....++.
T Consensus 318 ~~~~~~-~~~g~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~ 396 (403)
T 3laf_A 318 HPSNLY-AYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIVGGSNLRILGVVKSDEGFYQCVAENEAGNAQSSAQ 396 (403)
T ss_dssp CCCCEE-CCTTCCEEECCEEEEESCCEEEEEETTEECCCSSSEEEETTTEEEESSCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred cCcceE-EecCCeEEEEEEEeeccCCEEEEEECCEECCCCCcEEEecCccEEEeccccccCEEEEEEEEcCCceEEEEEE
Confidence 776666 8899999999999999999999999999887776665 34578999999999999999999999999999999
Q ss_pred EEEecCc
Q psy14542 306 IQYAHGK 312 (371)
Q Consensus 306 l~v~~~p 312 (371)
|.|..||
T Consensus 397 l~V~~P~ 403 (403)
T 3laf_A 397 LIVPKPA 403 (403)
T ss_dssp EECCCC-
T ss_pred EEEeCCC
Confidence 9998765
No 21
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4
Probab=100.00 E-value=1.8e-36 Score=271.01 Aligned_cols=312 Identities=16% Similarity=0.217 Sum_probs=219.7
Q ss_pred EEEeCCCcEEEeccCcEEEEEEecCCCCCCee-----EEEeCCEEEeeCCeeEEEEccCCcCCCeEEEEEEEcCCCCeEE
Q psy14542 13 IEMSPSGQVVVDVGHRIELHCRVSPKRLSSAK-----AWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHVSADDDSAQM 87 (371)
Q Consensus 13 ~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~-----~W~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~ 87 (371)
|.+.|+. ..+.+|++++|.|.+ .+ |.+.+ .|+|++..+.......|.|.+++. |+| |+|.+.+..+....
T Consensus 2 i~~~P~~-~~v~~G~~v~L~C~~-~g-p~p~~~~~~~~w~k~~~~~~~~~~~~l~i~~v~~-d~g-Y~C~a~~~~~~~~~ 76 (450)
T 1z7z_I 2 TSVSPSK-VILPRGGSVLVTCST-SC-DQPMLLGIETPLPKKELLLPGNNRKVYELSNVQE-DSQ-PMCYSNCPDGQSTA 76 (450)
T ss_dssp CEEESSE-EEEETTEEEEEEEEC-CS-SCCCEEEECSSSCEEECCSSTTTEEEEEEEEECS-CBC-CEEEEEETTEEEEE
T ss_pred cccCCCc-eEEecCCcEEEEEEc-cC-CCcccccccceeeecceEecCCCceEEEEEeccc-CCe-eEEEEeCCCCccee
Confidence 5677877 899999999999965 44 67777 899987654433567899999987 999 99999876666677
Q ss_pred EEEEEEecceeeEecCCc-eeeecCCcEEEEEEecCCCCCc--eEEEeeCCEEeeeCC------eeEEEEcccCcCCCee
Q psy14542 88 SAQVILGGELVEIASSNQ-VVVDVGHRIELHCRVSPKRLSS--AKAWLKDGLVLRRNS------DEVLVLDRVQREDAGM 158 (371)
Q Consensus 88 ~~~l~v~~~~~~~~~~~~-~~~~~g~~v~l~C~~~~~~~~~--~v~W~~~~~~~~~~~------~~~~~~~~~~~~~~g~ 158 (371)
.+.|.|...+..+...+. ..+.+|+.+.|.|.+.+.+++. .++|++++..+.... ...|.+.....+|.|.
T Consensus 77 ~~~l~V~~~P~~~~~~~~~~~v~~G~~v~L~C~~~g~~~~~~~~v~W~k~g~~l~~~~~~~~~~~~~L~i~~~~~~d~G~ 156 (450)
T 1z7z_I 77 KTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGAN 156 (450)
T ss_dssp ECEEEEEBCCSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEECCTTTEEEEEEEECCSSCSSCE
T ss_pred EEEEEEEeCCCcceecCCCceEeeCCeEEEEEEecCCCCCcCcEEEEeeCCEEeecccccccccceEEEEEeeccccCce
Confidence 788888844443433433 4558999999999999987723 899999999886432 3478899999999999
Q ss_pred EEEEEeCCce--------------e------------E------e---------------c--c----------------
Q psy14542 159 YQCHIEDGKY--------------H------------M------L---------------S--S---------------- 173 (371)
Q Consensus 159 y~~~~~~~~~--------------~------------~------~---------------~--~---------------- 173 (371)
|+|.+.+... . + . . .
T Consensus 157 Y~C~a~n~~g~~~~~~~~~~s~~~~l~v~~~~~~~p~~~~~~~v~~G~~v~l~C~~~g~~P~~~~~~~W~~~~~~~~~~~ 236 (450)
T 1z7z_I 157 FSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTV 236 (450)
T ss_dssp EEEEEEEECGGGTSCEEEEECCCEECEECCCCSSCCEEECCSEEETTSEEEEEEEEESCTTGGGCEEEEEETTEECCCEE
T ss_pred EEEEEEcccCCCCceEEeeccCccceeeeccCCCCCEecCceeEEeCCcEEEEEEeeCCCCCCceEEEEeCCCEeCCceE
Confidence 9998874310 0 0 0 0 0
Q ss_pred ----ceEEEE---EeecCCccc--eeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEE
Q psy14542 174 ----GELIIH---QVDESDRYR--SYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPC 244 (371)
Q Consensus 174 ----~~l~i~---~~~~~d~~g--~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C 244 (371)
..+.+. ++..+| .| .|+|.+.|. .+...... .+.|... .+|.+... ... +.+|+.+.|.|
T Consensus 237 ~~~~~~~~~~~~~~v~~~d-~G~~~Y~C~a~n~-~g~~~~~~---~l~V~~~---~~p~i~~~--~~~-v~~G~~v~l~C 305 (450)
T 1z7z_I 237 TYGNDSFSAKASVSVTAED-EGTQRLTCAVILG-NQSQETLQ---TVTIYSF---PAPNVILT--KPE-VSEGTEVTVKC 305 (450)
T ss_dssp EEETTEEEEEEEEECCGGG-CEEEEEEEEEEET-TEEEEEEE---EEEEECC---CCCEEEES--CSE-EETTCEEEEEE
T ss_pred EecCCceeEEEEEEeEhhh-CCcEEEEEEEccC-CccEEEEE---EEEEecC---CCCeEecC--Cee-EeCCCcEEEEE
Confidence 001111 457889 99 999999998 67666666 7777732 23444432 334 89999999999
Q ss_pred EeecCCCCceEEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCC-C---ceeEEEEEEecCcccccccce
Q psy14542 245 SAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEG-Q---DKMQLFIQYAHGKYHMLSSGE 320 (371)
Q Consensus 245 ~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g-~---~~~~~~l~v~~~p~~~~~~~~ 320 (371)
.+. |.+.+.| +|..+.... ....|.|..+..+|+|.|+|.|.|..+ . ...++.|.|..+|.
T Consensus 306 ~~~--p~p~i~W--~g~~~~~~~----~~~~L~i~~~~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~V~~~P~------- 370 (450)
T 1z7z_I 306 EAH--PRAKVTL--NGVPAQPLG----PRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPR------- 370 (450)
T ss_dssp EC--------------------C----CCCCEEEECCGGGTTCEEEEEEEEEETTEEEEEEEEEECEEEEEEE-------
T ss_pred ecC--CCCEeEE--CCEEcCCCC----ceEEEEEecCcccCCceEEEEEEcCCCCcccccceeEEEEEecCCc-------
Confidence 997 8899999 777662221 235799999999999999999997665 3 34778888888877
Q ss_pred EEEEeeeeccccccccccccccceeeeeecCCeEEEeeeeecCCCCccccC
Q psy14542 321 LIIHQVDEKNKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKYR 371 (371)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~ 371 (371)
+... + .|....+.+|+.+.|.|.+.|+|+|.|+|+
T Consensus 371 --~~~~--~------------~p~~~~~~~g~~~~l~C~~~g~P~p~i~W~ 405 (450)
T 1z7z_I 371 --LDER--D------------CPGNWTWPENSQQTPMCQAWGNPLPELKCL 405 (450)
T ss_dssp --CCST--T------------SCSEEEEETTCEECCCCCCEEESCCEEEEE
T ss_pred --eeec--c------------CCCceeEcCCCeEEEEEecccCCCCcEEEE
Confidence 3311 1 122337889999999999999999999996
No 22
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J
Probab=100.00 E-value=4.4e-35 Score=270.54 Aligned_cols=315 Identities=17% Similarity=0.297 Sum_probs=232.4
Q ss_pred CCCcEEEeccCcEEEEEEecCCCC---CCeeEEEeCCEE-----Eee--------------------CCeeEEEEccCCc
Q psy14542 17 PSGQVVVDVGHRIELHCRVSPKRL---SSAKAWLKDGLV-----LRR--------------------NSDEVLVLDRVQR 68 (371)
Q Consensus 17 p~~~~~~~~G~~v~l~C~~~~~~~---~~~~~W~~~~~~-----~~~--------------------~~~~~l~i~~~~~ 68 (371)
|.. +.+.+|++++|.|.+.. .+ ...+.|+|++.. +.. ....+|.|.+++.
T Consensus 7 P~~-v~v~~G~~v~L~C~~~~-~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~~~L~I~~v~~ 84 (585)
T 2ocw_A 7 PEE-VNSVEGNSVSITCYYPP-TSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQ 84 (585)
T ss_pred cce-eEEecCCcEEEEEeCCC-CcCCCcccEEEEeCCCCCCceEEEECCCcccceeeceEEEEecCCCCEEEEEECCCCc
Confidence 455 88999999999996543 33 237999998642 100 0235799999999
Q ss_pred CCCeEEEEEEEcCCCCeEEEEEEEEecceeeEecCCce-eeecCCcEEEEEEecCCCCCceEEEeeCCEEee--------
Q psy14542 69 EDAGMYQCHVSADDDSAQMSAQVILGGELVEIASSNQV-VVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLR-------- 139 (371)
Q Consensus 69 ~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~-~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~-------- 139 (371)
+|+|.|+|.+.+..+.....+.|.|. .+|.+...+.. .+.+|+.++|.|.+.+.++++.+.|++++....
T Consensus 85 ~D~G~Y~C~~~n~~~~~~~~~~l~V~-~~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~ 163 (585)
T 2ocw_A 85 DDSGRYKCGLGINSRGLSFDVSLEVS-QGPGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSG 163 (585)
T ss_pred ccCEEEEEEcccCCCCceEEEEEEEe-cCccccCCCccEEEEcCCCEEEEEEecCCCCCccEEEEECCCCCceEEecCCc
Confidence 99999999999888877888999998 55665554443 348999999999998766547899999874311
Q ss_pred -------------eCC----eeEEEEcccCcCCCeeEEEEEeCC------------------------------------
Q psy14542 140 -------------RNS----DEVLVLDRVQREDAGMYQCHIEDG------------------------------------ 166 (371)
Q Consensus 140 -------------~~~----~~~~~~~~~~~~~~g~y~~~~~~~------------------------------------ 166 (371)
... ...|.+.+++.+|.|.|+|.+.+.
T Consensus 164 ~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~p~~~~~~~G~~v~l~C~~~~ 243 (585)
T 2ocw_A 164 YVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPELVYEDLRGSVTFHCALGP 243 (585)
T ss_pred ccCccccCcEEEEeccCCCcEEEEEEccCChhHCeEEEEEeccCCccccceEEEEEccCCCceeEEcCCCcEEEEEEcCC
Confidence 000 126889999999999999655411
Q ss_pred ------ceeEe-c------------------------------cc--eEEEEEeecCCccceeEEEeeccccceee----
Q psy14542 167 ------KYHML-S------------------------------SG--ELIIHQVDESDRYRSYQCRGVNKLTGASL---- 203 (371)
Q Consensus 167 ------~~~~~-~------------------------------~~--~l~i~~~~~~d~~g~y~C~~~~~~~~~~~---- 203 (371)
.+... . ++ .|.|.+++.+| .|.|+|.+.|. .+...
T Consensus 244 ~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~L~i~~v~~~d-~G~Y~C~a~n~-g~~~~~~~~ 321 (585)
T 2ocw_A 244 EVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKED-AGRYLCGAHSD-GQLQEGSPI 321 (585)
T ss_pred CCCCceEEEEEeCCCCCcceEEeCCCcCCcccCCceEeeccCCCcEEEEEEccCChhh-CEEEEEEEEcC-CCccccCce
Confidence 01100 1 12 68899999999 99999999986 33221
Q ss_pred eeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecCCCCce----EEEe--CCc--cccc---------C
Q psy14542 204 LSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTI----KWYK--QDS--PVEE---------S 266 (371)
Q Consensus 204 ~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v----~W~~--~~~--~~~~---------~ 266 (371)
... .|.|. .+|.+...+.... +..|+.+.|.|.+.+.|.+.+ .|++ +|. .+.. .
T Consensus 322 ~~~---~l~V~-----~~p~~~~~~~~~~-~~~G~~v~l~C~~~~~p~p~i~~w~~W~~~~~g~~~~l~~~~~~~~~~~~ 392 (585)
T 2ocw_A 322 QAW---QLFVN-----EESTIPRSPTVVK-GVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYE 392 (585)
T ss_pred eeE---EEEEe-----cccccccCCcceE-EEeCCcEEEEEecCCCCCccEEEEEEEEccCCCCCceeeeecceeecccC
Confidence 344 67777 5666666666666 889999999999999999877 7999 876 4432 2
Q ss_pred CceEE----ecce--EEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEecCcccccccceEEEEeeeecccccccccccc
Q psy14542 267 DRIQR----IGSS--LSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMF 340 (371)
Q Consensus 267 ~~~~~----~~~~--l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (371)
.++.. .++. |.|.++..+|+|.|+|.| |..|.....+.|.|..+|+ .. ..|
T Consensus 393 ~r~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a-n~~g~~~~~~~l~V~~~~p---------~~--~~~----------- 449 (585)
T 2ocw_A 393 GRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLT-NGDTLWRTTVEIKIIEGEP---------NL--KVP----------- 449 (585)
T ss_pred CCEEEeccCCCcEEEEEECCCChhhCEEEEEcc-cCCCccceeEEEEEecCcc---------cc--ccC-----------
Confidence 33332 2233 999999999999999999 9999999999999987655 22 111
Q ss_pred ccceeeeeecCCeEEEeeeee----cCCCCccccC
Q psy14542 341 EKHRILNVKKDESVILPCSAQ----GNPLPTIKYR 371 (371)
Q Consensus 341 ~~~~~~~~~~g~~~~l~C~~~----g~p~p~i~W~ 371 (371)
....+.+|+.+.|.|.+. |.|.|.|+|+
T Consensus 450 ---~~~~v~~G~~v~L~C~~~~~~~~~p~~~v~W~ 481 (585)
T 2ocw_A 450 ---GNVTAVLGETLKVPCHFPCKFSSYEKYWCKWN 481 (585)
T ss_pred ---CceeEecCCcEEEEEEecCCCCCCccEEEEEe
Confidence 122788999999999997 6788899996
No 23
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}
Probab=100.00 E-value=4.7e-36 Score=287.32 Aligned_cols=283 Identities=22% Similarity=0.352 Sum_probs=226.8
Q ss_pred EEEeccCcEEEEEEecCCCCCCeeEEEeCCE------EEeeC-----CeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEE
Q psy14542 21 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGL------VLRRN-----SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSA 89 (371)
Q Consensus 21 ~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~------~~~~~-----~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~ 89 (371)
..+.+|+.+.|.| ...+.|.+.+.|+|++. .+... ...+|.|.+++.+|+|.|+|.+.|..+.....+
T Consensus 258 ~~v~~g~~v~L~C-~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~ 336 (816)
T 3dmk_A 258 KTYSGSSTMALLC-PAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVET 336 (816)
T ss_dssp EEECTTSCEEECC-CCBCSSCCEEEEEEECTTSSCEEECCCSSSEEEETTEEEECSCCGGGCEEEEEEEECSSCEEEEEE
T ss_pred eEEeCCCeEEEEE-EeeecCCCeEEEEeCCCCCccCcceecCCceEeccceEEECCCCHhHCEEEEEEEEcCCCceEEEE
Confidence 5788999999999 55678899999998432 11111 345899999999999999999999988888888
Q ss_pred EEEEecceeeEecCCc-eeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCce
Q psy14542 90 QVILGGELVEIASSNQ-VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKY 168 (371)
Q Consensus 90 ~l~v~~~~~~~~~~~~-~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~ 168 (371)
.|.|. .++.+...+. ..+.+|+.+.|.|.+.+.+. +.+.|++++..+....
T Consensus 337 ~l~V~-~~~~~~~~~~~~~v~~G~~v~l~C~~~g~p~-~~v~W~k~g~~~~~~~-------------------------- 388 (816)
T 3dmk_A 337 VLTVT-APLSAKIDPPTQTVDFGRPAVFTCQYTGNPI-KTVSWMKDGKAIGHSE-------------------------- 388 (816)
T ss_dssp EEEEC-EEEEEEEESSEEECCTTSCEEEEEEEEEECC-CEEEEEETTEECSCCS--------------------------
T ss_pred EEEEc-CCCceeeCCCceEecCCCCEEEEEEEeccCC-CEEEEEECCEECCCCC--------------------------
Confidence 88888 4554444443 44489999999999998877 8999999998775431
Q ss_pred eEeccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeec
Q psy14542 169 HMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQG 248 (371)
Q Consensus 169 ~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~ 248 (371)
..|.|.+++.+| .|.|+|.+.|. .+....+. .+.|... ..+|.+...+.... +..|+.+.|.|.+.|
T Consensus 389 -----~~L~i~~v~~~d-~G~Y~C~a~n~-~g~~~~~~---~l~v~~~--~~~p~i~~~~~~~~-v~~G~~v~L~C~~~g 455 (816)
T 3dmk_A 389 -----SVLRIESVKKED-KGMYQCFVRND-RESAEASA---ELKLGGR--FDPPVIRQAFQEET-MEPGPSVFLKCVAGG 455 (816)
T ss_dssp -----SEEEESSCCGGG-CEEEEEEEECS-SCEEEECC---EEECCCS--SCCCEEEEECCCEE-ECSSSCEEEEEEEEC
T ss_pred -----CEEEEcCCCHHH-CEEEEEEEECC-CCcEEEEE---EEEEccc--cCCCceEecCcceE-EcCCCCEEEEEEEec
Confidence 578999999999 99999999998 66655555 6666421 14666666555555 899999999999999
Q ss_pred CCCCceEEEeCCcccccCCceEEe---------cceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEecCcccccccc
Q psy14542 249 NPLPTIKWYKQDSPVEESDRIQRI---------GSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSG 319 (371)
Q Consensus 249 ~p~~~v~W~~~~~~~~~~~~~~~~---------~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~~~~~~ 319 (371)
.|.+.+.|+++|..+....++... ...|.|.++..+|+|.|+|.|.|..|....++.|.|..+|.
T Consensus 456 ~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~------ 529 (816)
T 3dmk_A 456 NPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLPY------ 529 (816)
T ss_dssp SSCCEEEEEETTEECCSCTTEEEEEEECTTSCEEEEEEESSCCTTTCEEEEEEEEETTEEEEEEEEEEECSSCE------
T ss_pred CCCCEEEEEECCEECCCCCCcccccEEecCCCcEEEEEEeeccccCCEEEEEEEEECCCeEEEEEEEEEecCCe------
Confidence 999999999999988777665421 13699999999999999999999999999999999988887
Q ss_pred eEEEEeeeeccccccccccccccceeeeeecCCeEEEeeeeecCCCCccccC
Q psy14542 320 ELIIHQVDEKNKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKYR 371 (371)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~ 371 (371)
+. ..+. ..+.+|+.+.|.|.+.|.|.|.++|+
T Consensus 530 ---~~--~~~~---------------~~v~~G~~v~l~C~~~g~p~~~i~W~ 561 (816)
T 3dmk_A 530 ---IR--QMEK---------------KAIVAGETLIVTCPVAGYPIDSIVWE 561 (816)
T ss_dssp ---EC--CCCC---------------EEEETTCCEEEECCEECSSEEEEEEE
T ss_pred ---eE--ccCC---------------eEEecCCeEEEEEEecCCCCCEEEEE
Confidence 43 1111 16779999999999999999999995
No 24
>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}
Probab=100.00 E-value=1.7e-36 Score=258.51 Aligned_cols=273 Identities=15% Similarity=0.218 Sum_probs=197.7
Q ss_pred ccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC-------CeeEEEEccCCcCCCeEEEEEEEcC
Q psy14542 9 SSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN-------SDEVLVLDRVQREDAGMYQCHVSAD 81 (371)
Q Consensus 9 ~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~-------~~~~l~i~~~~~~d~G~Y~C~~~~~ 81 (371)
.+|.+. .|.. ..+.+|++++|.|.+....|.+.+.|++++..+... ....|.|.+++.+|+|.|+|.+.+.
T Consensus 6 ~~P~~~-~~~~-~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~ 83 (317)
T 2y25_A 6 TGPHFV-EYLS-WEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDD 83 (317)
T ss_dssp SCCEEE-EEEE-EEEETTTEEEEEEEEESCCTTCEEEEEETTEEECCSCC-----CCEEEEETTCCSTTCSCEEEEEESS
T ss_pred CCCcEe-eeee-EEECCCCeEEEEEEEcCCCCCCEEEEEECCeEcCCCCcEEEECCeEEEEEccCCcccCeEEEEEEECC
Confidence 345565 4555 889999999999976555578899999999988754 4469999999999999999999998
Q ss_pred CCCeEEEEEEEEecceeeEecC-CceeeecCCcEEEEEEe---------cCCCCCceEEEeeCCEEeeeCCeeEEEEccc
Q psy14542 82 DDSAQMSAQVILGGELVEIASS-NQVVVDVGHRIELHCRV---------SPKRLSSAKAWLKDGLVLRRNSDEVLVLDRV 151 (371)
Q Consensus 82 ~~~~~~~~~l~v~~~~~~~~~~-~~~~~~~g~~v~l~C~~---------~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~ 151 (371)
.+.....+.|.|.. ++.+... ....+..|+.+.|.|.+ .+..+.+.+.|++++..+...........
T Consensus 84 ~g~~~~~~~l~v~~-~~~~~~~~~~~~~~~g~~~~l~c~~~~~~l~c~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~-- 160 (317)
T 2y25_A 84 RGKDKSRLKLVDEA-FKELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVT-- 160 (317)
T ss_dssp SCEEEEEECCSTHH-HHHHHHHHHHHHHTCBCCCEEEECSSEEEEEEEBSSCCSSCEEEEEESSSBCCCCSSEEEEEC--
T ss_pred CCcEEEEEEEEEec-CccccccCCceecccCCCeEEEeeccccEEEEEeccCCCCcEEEEEECCEECCCCCCeEEecc--
Confidence 88776666666652 2221111 11112345555555554 44333389999999987765432211110
Q ss_pred CcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecc---------------
Q psy14542 152 QREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTEN--------------- 216 (371)
Q Consensus 152 ~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~--------------- 216 (371)
. ....|.|.+++.+| .|.|+|.+.|. .+....+. .+.+...
T Consensus 161 -------------~------~~~~L~i~~~~~~d-~G~Y~C~a~n~-~g~~~~~~---~l~v~~~~~~~~~~~~~~~~~~ 216 (317)
T 2y25_A 161 -------------G------EQIWLQINEPTPND-KGKYVMELFDG-KTGHQKTV---DLSGQAYDEAYAEFQRLKQAAI 216 (317)
T ss_dssp -------------S------SEEEEEEESCCGGG-CEEEEEEEECS-SCEEEEEE---EECHHHHHHHHHHHHHHHHHHH
T ss_pred -------------C------CEEEEEECcCCccc-CeeEEEEEEeC-CceEEEEE---EEeeeeccccchhhcccCCccc
Confidence 0 11469999999999 99999999998 66665555 5544310
Q ss_pred hhccccceeee-eeeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccCCceEEecc-----eEEEeccCCCCCeEEE
Q psy14542 217 KRLLSAAKMFE-KHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGS-----SLSISHVEESDSGVWN 290 (371)
Q Consensus 217 ~~~~~p~~~~~-~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~-----~l~i~~~~~~d~G~Y~ 290 (371)
.....|.+... +.... +..|+.+.|.|.+.|.|.+.+.|++++..+..+.++..... .|.|.++..+|+|.|+
T Consensus 217 ~~~~~p~~~~~~~~~~~-v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~ 295 (317)
T 2y25_A 217 AEKNRARVLGGLPDVVT-IQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYG 295 (317)
T ss_dssp HTTTSCEEEEBCCSEEE-EETTSBBCEEEEEECSSCCEEEEEESSSEECCCSSEEECCBTTTEEEEEEBSCCSTTCEEEE
T ss_pred CcCCCCcccccCCccEE-EEcCCEEEEEEEEecCCCCEEEEEECCEeCCCCCcEEEEEcCCCEEEEEECCCCHHHCEEEE
Confidence 00112333332 33344 89999999999999999999999999999888777664332 8999999999999999
Q ss_pred EEEEcCCCCceeEEEEEEecC
Q psy14542 291 CVANNSEGQDKMQLFIQYAHG 311 (371)
Q Consensus 291 C~a~n~~g~~~~~~~l~v~~~ 311 (371)
|.|.|..|....++.|.|..|
T Consensus 296 C~a~N~~g~~~~~~~l~V~~P 316 (317)
T 2y25_A 296 LVVKNKYGSETSDFTVSVFIP 316 (317)
T ss_dssp EEEEETTEEEEEEEEEEEECC
T ss_pred EEEEeCCCeEEEEEEEEEEcC
Confidence 999999999999999988754
No 25
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E
Probab=100.00 E-value=5.9e-36 Score=259.95 Aligned_cols=258 Identities=13% Similarity=0.201 Sum_probs=199.6
Q ss_pred EEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEee--------------------------CCeeEEEEccCCcCCCeEE
Q psy14542 21 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRR--------------------------NSDEVLVLDRVQREDAGMY 74 (371)
Q Consensus 21 ~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~--------------------------~~~~~l~i~~~~~~d~G~Y 74 (371)
+.+.+|++++|.|. ..+.|.+.+.|+|++..+.. ....+|.|.+++.+|+|.|
T Consensus 4 v~~~~G~~v~L~C~-~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y 82 (363)
T 1wio_A 4 VLGKKGDTVELTCT-ASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTY 82 (363)
T ss_dssp EEEETTSCEEECCC-CTTCSSCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCHHHHHTTCCCEEECSCCGGGCEEE
T ss_pred EEEeCCCeEEEEEE-ecCCCceEEEEEeCCccceeccCccEEecCCcccccceeeeeccccCCeEEEEECCCCHHHCEEE
Confidence 67899999999995 44778889999999753210 0255799999999999999
Q ss_pred EEEEEcCCCCeEEEEEEEEecceeeEecCCceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcC
Q psy14542 75 QCHVSADDDSAQMSAQVILGGELVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQRE 154 (371)
Q Consensus 75 ~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~ 154 (371)
+|.+.+. ...+.|.|.. +...+...+.+|+.++|.|.+.+.+. +.+.|++++..+..
T Consensus 83 ~C~~~n~----~~~~~l~V~~----~~~~~~~~v~~G~~v~l~C~~~~~p~-~~v~W~~~~~~~~~-------------- 139 (363)
T 1wio_A 83 ICEVEDQ----KEEVQLLVFG----LTANSDTHLLQGQSLTLTLESPPGSS-PSVQCRSPRGKNIQ-------------- 139 (363)
T ss_dssp EEEETTE----EEEEEEEEEE----EEESSCSSEESBSCEEEEEECCTTCC-CCEEEECSSSCEEE--------------
T ss_pred EEEEEEC----CCcEEEEEEe----CCCCCceEEecCCCEEEEEEcCCCCC-CeEEEEcCCCcccc--------------
Confidence 9999775 3466777762 23344445689999999999988766 89999998754321
Q ss_pred CCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeee
Q psy14542 155 DAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNV 234 (371)
Q Consensus 155 ~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~ 234 (371)
....|.|.++..+| +|.|+|.+.+. .+...... .+.|. .+|... .... +
T Consensus 140 -----------------~~~~L~i~~v~~~d-~G~Y~C~a~~~-~~~~~~~~---~l~v~-----~~p~~~---~~~~-~ 188 (363)
T 1wio_A 140 -----------------GGKTLSVSQLELQD-SGTWTCTVLQN-QKKVEFKI---DIVVL-----AFQKAS---SIVY-K 188 (363)
T ss_dssp -----------------ESSEEEECSBCGGG-CEECEEEEEET-TEEEEECC---EECEE-----CCSCSE---EEEE-E
T ss_pred -----------------cceEEEEeeCChhc-CCEEEEEEecC-CCeEEEEE---EEEEe-----cCCCCC---CceE-E
Confidence 12689999999999 99999999987 55555444 56555 333322 3333 8
Q ss_pred ecCCeEEEEEEeec-----CCCCceEEEeCCccccc--------CCceEE------------e--cceEEEeccCCCCCe
Q psy14542 235 KKDESVILPCSAQG-----NPLPTIKWYKQDSPVEE--------SDRIQR------------I--GSSLSISHVEESDSG 287 (371)
Q Consensus 235 ~~g~~~~l~C~~~~-----~p~~~v~W~~~~~~~~~--------~~~~~~------------~--~~~l~i~~~~~~d~G 287 (371)
.+|+.+.|.|.+.+ .|.+.+.|+++|..+.. +.++.. . ...|.|.++..+|+|
T Consensus 189 ~~G~~v~l~C~~~~~~~~~~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G 268 (363)
T 1wio_A 189 KEGEQVEFSFPLAFTVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAG 268 (363)
T ss_dssp ETBCCEEEECCCCCCCCSSCEEEEEEEEESSCCCCCCEEEEEECSSCEEEEEEECSSCCBCCSSSSCEEEESSBCGGGCE
T ss_pred ecCCEEEEEEEEecccccCCCceeEEEecCCCCccceEEEEEecCCeeeccccccchhhhcccCCceEEEEccCCcCcCc
Confidence 88999999998877 77889999999988765 344432 2 338999999999999
Q ss_pred EEEEEEEcC--CCCceeEEEEEEecCcccccccceEEEEeeeeccccccccccccccceeeeeecCCeEEEeeeeecCCC
Q psy14542 288 VWNCVANNS--EGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPL 365 (371)
Q Consensus 288 ~Y~C~a~n~--~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~ 365 (371)
.|+|.|.|. .|.....+.|.|. . + .|+.+.|.|.+.|.|+
T Consensus 269 ~Y~C~a~n~~~~g~~~~~~~l~V~---~---------v--------------------------~g~~~~l~C~~~g~p~ 310 (363)
T 1wio_A 269 SGNLTLALEAKTGKLHQEVNLVVM---R---------A--------------------------TQLQKNLTCEVWGPTS 310 (363)
T ss_dssp EEEEEECBTTTTCCEEEEEEEEEE---E---------E--------------------------CCCSSSEEEEEESSCC
T ss_pred EEEEEEEEhhhcCeEEEEEeEEEE---E---------e--------------------------cCCCeeEEEEEccccC
Confidence 999999999 9988888887765 2 0 2788999999999999
Q ss_pred Cc--cccC
Q psy14542 366 PT--IKYR 371 (371)
Q Consensus 366 p~--i~W~ 371 (371)
|. ++|+
T Consensus 311 p~~~i~W~ 318 (363)
T 1wio_A 311 PKLMLSLK 318 (363)
T ss_dssp TTCCEEEE
T ss_pred CCccEEEE
Confidence 98 9995
No 26
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*
Probab=100.00 E-value=2.2e-35 Score=258.10 Aligned_cols=254 Identities=25% Similarity=0.397 Sum_probs=199.8
Q ss_pred CcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC-------CeeEEEEccCCcCCCeEEEEEEEcCCCCeEEE---
Q psy14542 19 GQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN-------SDEVLVLDRVQREDAGMYQCHVSADDDSAQMS--- 88 (371)
Q Consensus 19 ~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~-------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~--- 88 (371)
....+.+|+.+.|.|....+.+.+.+.|++++..+... ..+.|.|.+++.+|+|.|+|.+.|..+.....
T Consensus 110 ~~~~v~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~ 189 (384)
T 3kld_A 110 STVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPP 189 (384)
T ss_dssp CCEEEEETCCEEECCCCCSEESCEEEEEEETTEECCCSSSEEECTTTCCEEESSCCGGGCEEEEEEEEETTTTEEEECCC
T ss_pred CceeEEcCCCeEEecCCCCCCCCeEEEEEECCCCCEeeccEEEEcCCCcEEEeecCHHHCceEEEEEecccccceeeCCc
Confidence 34789999999999965555677899999998765432 45679999999999999999999987654311
Q ss_pred EEEEEe------cceeeEec--CCceeeecCCcEEEEEEecCCCCCceEEEeeCCE-EeeeCCeeEEEEcccCcCCCeeE
Q psy14542 89 AQVILG------GELVEIAS--SNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGL-VLRRNSDEVLVLDRVQREDAGMY 159 (371)
Q Consensus 89 ~~l~v~------~~~~~~~~--~~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~-~~~~~~~~~~~~~~~~~~~~g~y 159 (371)
..+.+. ...|.+.. .....+.+|+.+.|.|.+.+.|. +.+.|++++. .+....
T Consensus 190 ~~~~v~~~~~~~~~~p~~~~~~~~~~~~~~G~~v~l~C~~~g~P~-p~i~W~k~~~~~~~~~~----------------- 251 (384)
T 3kld_A 190 TPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPV-PTILWRRADGKPIARKA----------------- 251 (384)
T ss_dssp EEEEEEEEEECCCEEEEEEEECCSEEEEETTSCEEEEEEEEEESC-CEEEEEETTCCCCCTTC-----------------
T ss_pred eEEEEccCCcccccCCceeecCCCceEecCCCcEEEEEEEeecCC-CcEEEEeCCCccccccc-----------------
Confidence 122221 01222222 22334488999999999999888 8999999543 332211
Q ss_pred EEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCe
Q psy14542 160 QCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDES 239 (371)
Q Consensus 160 ~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~ 239 (371)
.....++.|.|.+++.+| +|.|+|.|.|. .|...... .+.|. .+|.+...+.... +..|+.
T Consensus 252 --------~~~~~~~~L~I~~v~~~D-~G~Y~C~a~N~-~G~~~~~~---~l~v~-----~~P~~~~~~~~~~-v~~g~~ 312 (384)
T 3kld_A 252 --------RRHKSNGILEIPNFQQED-AGSYECVAENS-RGKNVAKG---QLTFY-----AQPNWVQIINDIH-VAMEES 312 (384)
T ss_dssp --------EECTTSCEEEECSCCGGG-CEEEEEEEEET-TEEEEEEE---EEEEE-----EEEEEEECCCCEE-ECTTCC
T ss_pred --------eecCCCcEEEECCCChhh-CEEEEEEEEcC-CCeEEEEE---EEEEe-----cCCccccCCCceE-ecCCCC
Confidence 001123679999999999 99999999999 77776666 78887 6677766666666 899999
Q ss_pred EEEEEEeecCCCCceEEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEe
Q psy14542 240 VILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYA 309 (371)
Q Consensus 240 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 309 (371)
+.|.|.+.|.|.|.+.|+++|..+....++...+++|.|.++..+|+|.|+|.|.|..|....++.|.|.
T Consensus 313 v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V~ 382 (384)
T 3kld_A 313 VFWECKANGRPKPTYRWLKNGDPLLTRDRIQIEQGTLNITIVNLSDAGMYQCVAENKHGVIFSSAELSVI 382 (384)
T ss_dssp EEEECEEEEESCCEEEEEETTEECCCBTTEEEETTEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred EEEEeECCccCCCeEEEEECCEECCCCccEEEeCCEEEEeecChhhCEEEEEEEEeCCceEEeceEEEEe
Confidence 9999999999999999999999998888888888899999999999999999999999999999999885
No 27
>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1
Probab=100.00 E-value=2.9e-35 Score=262.21 Aligned_cols=309 Identities=20% Similarity=0.287 Sum_probs=203.7
Q ss_pred ceEEEeCCCcEEEeccCcEEEEEEecCCCCC----CeeEEEeCC--EEE---e------------------eCCeeEEEE
Q psy14542 11 LSIEMSPSGQVVVDVGHRIELHCRVSPKRLS----SAKAWLKDG--LVL---R------------------RNSDEVLVL 63 (371)
Q Consensus 11 ~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~----~~~~W~~~~--~~~---~------------------~~~~~~l~i 63 (371)
+.|...|.. +.+.+|++++|.|.+ .+.+. +.+.|+|++ ..+ . .....+|.|
T Consensus 2 ~~v~~~p~~-~~v~~G~~v~L~C~~-~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I 79 (438)
T 1qgc_4 2 IVLTQSPAS-LAVSLGQRATISCRA-SESVDSSGHSFMHWYQQKPGQPPKLLIYRASNLESGIPDRFSGSGSRTDFTLTI 79 (438)
T ss_dssp CCEEEECSE-EEECTTSCEEEEEEE-SSCCEETTEECEEEEEECTTSCCEEEESSSSCBCSSCCTTEEEEEETTEEEEEE
T ss_pred CceEecCCe-EEeeCCCCEEEEEec-CCCcccCCcceEEEEEECCCCCcEEEEEECcccCCCccCcEEEEccCCcEEEEe
Confidence 345566776 889999999999964 44444 479999952 211 0 013568999
Q ss_pred ccCCcCCCeEEEEEEEcCCCCe-EEEEEEEEec--ceeeEecCC-ceeeecCCcEEEEEEecCC-CCCceEEEeeCCEEe
Q psy14542 64 DRVQREDAGMYQCHVSADDDSA-QMSAQVILGG--ELVEIASSN-QVVVDVGHRIELHCRVSPK-RLSSAKAWLKDGLVL 138 (371)
Q Consensus 64 ~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~v~~--~~~~~~~~~-~~~~~~g~~v~l~C~~~~~-~~~~~v~W~~~~~~~ 138 (371)
.+++.+|+|.|+|.+.+..+.. ...+.|.|.. .+|.+...+ .....+|+.+.|.|.+.+. |.+..++|++++..+
T Consensus 80 ~~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~ 159 (438)
T 1qgc_4 80 DPVEADDVATYYCQQSNEVPLTFGAGTKLDLKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSER 159 (438)
T ss_dssp SSCCGGGCEEEEEEECSSTTCCBCCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCEEEEEEETTEEE
T ss_pred CCCcCcCCeeEEEEEecCCCccccCceeEEecCCCCCCEEEecCCChhhccCCceEEEEEEccccCCCcEEEEEECCEEc
Confidence 9999999999999999876533 3334555542 244444322 2222468899999999874 442389999999987
Q ss_pred eeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchh
Q psy14542 139 RRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKR 218 (371)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~ 218 (371)
....... ........|.| .. .+.|.|.++..+| +|.|+|.+.|. .+.... .+.+...
T Consensus 160 ~~~~~~~---~~~~~~~~~~~---------~~--~~~L~i~~~~~~d-~G~Y~C~a~n~-~~~~~~-----~~~~~~~-- 216 (438)
T 1qgc_4 160 QNGVLNS---WTDQDSKDSTY---------SM--SSTLTLTKDEYER-HNSYTCEATHK-TSTSPI-----VKSFNRN-- 216 (438)
T ss_dssp CTTEEEE---EECCCTTTCCE---------EE--EEEEEEEHHHHHT-CCEEEEEEEET-TCSSCE-----EEEEETT--
T ss_pred CCCceec---cccccCCCCcE---------EE--EEEEEEeCcccCC-CCeEEEEEEec-ccCCce-----ecccccc--
Confidence 6541110 11111222322 11 2689999999999 99999999998 554322 2222211
Q ss_pred ccccceeeeeeeeeeeecCCeEEEEEEeecCC--CCceEEEeC--Ccccc-----------------cCCceEEe-----
Q psy14542 219 LLSAAKMFEKHRILNVKKDESVILPCSAQGNP--LPTIKWYKQ--DSPVE-----------------ESDRIQRI----- 272 (371)
Q Consensus 219 ~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p--~~~v~W~~~--~~~~~-----------------~~~~~~~~----- 272 (371)
..+.....+.... +..|+.+.|.|.+.|.| .+.+.|+++ +..+. ...++...
T Consensus 217 -~~~~~~~~~~~~~-v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 294 (438)
T 1qgc_4 217 -ECEVMLVESGGGL-VKPGGSLKLSCTASGFIFNRCAMSWVRQTPEKRLEWVATISSGGTYTYYPDSVKGRFTISRDNAK 294 (438)
T ss_dssp -C-CCEEEEECCEE-ECTTCCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCCEECCGGGTTTEEEEEETTT
T ss_pred -cceeEEecCCceE-EecCCcEEEEEEEcccccCCcEEEEEECCCCCCcEEEEEEeecCCceecCcccCCcEEEEeecCC
Confidence 1222222334444 89999999999999988 678999997 44332 12344422
Q ss_pred -cceEEEeccCCCCCeEEEEEEEcCCC-----CceeEEEEEEec----CcccccccceEEEEeeeecccccccccccccc
Q psy14542 273 -GSSLSISHVEESDSGVWNCVANNSEG-----QDKMQLFIQYAH----GKYHMLSSGELIIHQVDEKNKRLLSAAKMFEK 342 (371)
Q Consensus 273 -~~~l~i~~~~~~d~G~Y~C~a~n~~g-----~~~~~~~l~v~~----~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (371)
...|.|.++..+|+|.|+|.|.|..+ .......|.|.. +|. +. ...|..
T Consensus 295 ~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~~~~~P~---------v~-~~~~~~----------- 353 (438)
T 1qgc_4 295 NTLYLQMSSLRSADTAMYYCVRREDGGDEGFAYWGQGTVVTVSAAKTTPPS---------VY-PLAPGS----------- 353 (438)
T ss_dssp TEEEEEECSCCGGGCCEEEEEECCSSSCCCCCSBCCCEEEEECSSCCBCCE---------EE-EECCCG-----------
T ss_pred CeEEEEECCCChhhCEEEEEEEEccCCCccceeeCCCEEEEEecCCCCCCe---------EE-EcCccc-----------
Confidence 23799999999999999999999544 222345666664 233 22 122222
Q ss_pred ceeeeeecCCeEEEeeeeecC-CCC-ccccC
Q psy14542 343 HRILNVKKDESVILPCSAQGN-PLP-TIKYR 371 (371)
Q Consensus 343 ~~~~~~~~g~~~~l~C~~~g~-p~p-~i~W~ 371 (371)
.+.+|+.++|.|.+.|+ |.| .|+|+
T Consensus 354 ----~~~~g~~v~L~C~~~g~~P~~~~v~W~ 380 (438)
T 1qgc_4 354 ----AAAAASMVTLGCLVKGYFPEPVTVTWN 380 (438)
T ss_dssp ----GGCCSSEEEEEEEEESCBSSCCEEEEG
T ss_pred ----ccccCCcEEEEEEeccccCCCcEEEEe
Confidence 45589999999999998 878 99996
No 28
>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}
Probab=100.00 E-value=4.1e-35 Score=267.01 Aligned_cols=309 Identities=14% Similarity=0.197 Sum_probs=210.9
Q ss_pred EeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCC--EE---Eee------------------CCeeEEEEccCCcCCC
Q psy14542 15 MSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDG--LV---LRR------------------NSDEVLVLDRVQREDA 71 (371)
Q Consensus 15 ~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~--~~---~~~------------------~~~~~l~i~~~~~~d~ 71 (371)
..|.. +.+.+|++++|.|.+ .+.+.+.+.|+|++ .. +.. ....+|.|.+++.+|+
T Consensus 5 ~~p~~-~~v~~G~~v~L~C~~-~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~ 82 (523)
T 2rcj_C 5 TQPPS-ASGTPGQRVTISCTG-TSSGSITVNWYQQLPGMAPKLLIYRDAMRPSGVPTRFSGSKSGTSASLAISGLEAEDE 82 (523)
T ss_pred ccCCc-eEEecCCcEEEEEEE-eccCCceEEEEEeCCCCCcEEEEEeccccCcccCCcEEEecCCCEEEEEECCCChhhC
Confidence 34555 889999999999965 45678899999964 11 100 1345899999999999
Q ss_pred eEEEEEEEcCCCCe---EEEEEEEEec---ceeeEecCCce-eeecCCcEEEEEEecCCCCC-ceEEEeeCCEEeeeCCe
Q psy14542 72 GMYQCHVSADDDSA---QMSAQVILGG---ELVEIASSNQV-VVDVGHRIELHCRVSPKRLS-SAKAWLKDGLVLRRNSD 143 (371)
Q Consensus 72 G~Y~C~~~~~~~~~---~~~~~l~v~~---~~~~~~~~~~~-~~~~g~~v~l~C~~~~~~~~-~~v~W~~~~~~~~~~~~ 143 (371)
|.|+|.+.+..+.. ...+.|.|.. .+|.+...+.. ...+|+.+.|.|.+.+.+++ ..++|+++|..+.....
T Consensus 83 G~Y~C~a~n~~g~~~~~~~~~~l~V~~~~~~~P~~~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~ 162 (523)
T 2rcj_C 83 SDYYCASWNSSDNSYVFGTGTKVTVLGQPKANPTVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADGSPVKAGVE 162 (523)
T ss_pred EEEEEEEccCCCccccccCceEEEeccCCCcCCeEEecCCcccccCCCceEEEEEeccccCCceEEEEecCCCCCCCceE
Confidence 99999999876532 2446677731 34444443333 33679999999999987663 49999999987764321
Q ss_pred eEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccc
Q psy14542 144 EVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAA 223 (371)
Q Consensus 144 ~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~ 223 (371)
.. .......| .+.. .+.|.|.++..+| +|.|+|.+.|. .+...... .+.+.. ....+|.
T Consensus 163 ~~----~~~~~~~~---------~~~~--~s~L~i~~~~~~d-~G~Y~C~a~n~-~~~~~~~~---~~~~~~-~~~~~P~ 221 (523)
T 2rcj_C 163 TT----KPSKQSNN---------KYAA--SSYLSLTPEQWKS-HRSYSCQVTHE-GSTVEKTV---APTECS-ASTKGPS 221 (523)
T ss_pred ec----cccccCCC---------CEEE--EEEEEEechhcCC-CceEEEEEEec-Ccccccce---eeeecC-CCCcCCE
Confidence 11 00111222 2222 2579999999999 99999999998 55443333 221110 1114455
Q ss_pred eeeeeeeeeeeecCCeEEEEEEeecC-CCC-ceEEEeCCcccccCC--ceE------EecceEEEeccCCCCCeEEEEEE
Q psy14542 224 KMFEKHRILNVKKDESVILPCSAQGN-PLP-TIKWYKQDSPVEESD--RIQ------RIGSSLSISHVEESDSGVWNCVA 293 (371)
Q Consensus 224 ~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~v~W~~~~~~~~~~~--~~~------~~~~~l~i~~~~~~d~G~Y~C~a 293 (371)
+........ +..|+.+.|.|.+.|. |.+ .|.|++++..+.... +.. ...+.|.|.++..+| |.|+|.|
T Consensus 222 v~~~~~~~~-~~~G~~~~l~C~~~g~~P~p~~v~W~k~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-G~Y~C~a 299 (523)
T 2rcj_C 222 VFPLAPSSK-STSGGTAALGCLVKDYFPQPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNV 299 (523)
T ss_pred EEecCCCcc-cccCCceEEEEEEeceeCCCeEEEEecCCcccceEeCCcEecCCCcEEEEEEEEechhhcCC-ceEEEEE
Confidence 443333334 7889999999999886 777 899999998654211 111 123479999999999 9999999
Q ss_pred EcCCCCceeEEEEEEecCcccccccceEEEEeeeeccccccccccccccceeeeeecCCeEEEeeeeecCCC----Cccc
Q psy14542 294 NNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPL----PTIK 369 (371)
Q Consensus 294 ~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~----p~i~ 369 (371)
.|..|.......|.|...|. +. +..|.... .+.+|+.+.|.|.+.|.|+ +.|+
T Consensus 300 ~n~~g~~~~~~~l~v~~~P~---------~~-~~~p~~~~-------------~v~~g~~~~l~C~~~g~~p~~~~~~v~ 356 (523)
T 2rcj_C 300 NHKPSNTKVDKRVEPLSLPS---------VF-LFPPKPKD-------------TLMISRTPEVTCVVVDVSHEDPQVKFN 356 (523)
T ss_pred EeCCCCcceEEecCCCcCce---------EE-ecCCCchh-------------hcccCCceEEEEEEecccCCCCceEEE
Confidence 99999987777777766665 33 22222110 2678999999999999764 4899
Q ss_pred cC
Q psy14542 370 YR 371 (371)
Q Consensus 370 W~ 371 (371)
|+
T Consensus 357 W~ 358 (523)
T 2rcj_C 357 WY 358 (523)
T ss_pred EE
Confidence 96
No 29
>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}
Probab=100.00 E-value=5.8e-35 Score=266.02 Aligned_cols=310 Identities=15% Similarity=0.223 Sum_probs=209.1
Q ss_pred cccceEEEeCCCcEEEeccCcEEEEEEecCCCCC-CeeEEEeCCEEEeeC---------C------eeEEEEccCCcCCC
Q psy14542 8 KSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLS-SAKAWLKDGLVLRRN---------S------DEVLVLDRVQREDA 71 (371)
Q Consensus 8 ~~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~-~~~~W~~~~~~~~~~---------~------~~~l~i~~~~~~d~ 71 (371)
..+|.+.+.|.. ..+.+|+.++|.|.+....|. ..+.|+|+|..+... . ...|.|.+++.+|+
T Consensus 112 ~~~P~~~~~~~~-~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~ 190 (523)
T 2rcj_C 112 KANPTVTLFPPS-SEELQANKATLVCLISDFYPGAVTVAWKADGSPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSH 190 (523)
T ss_pred CcCCeEEecCCc-ccccCCCceEEEEEeccccCCceEEEEecCCCCCCCceEeccccccCCCCEEEEEEEEEechhcCCC
Confidence 346777777777 667789999999976544443 489999998776432 1 13699999999999
Q ss_pred eEEEEEEEcCCCCeEEEEEEEEe---cceeeEe-cCCceeeecCCcEEEEEEecCC-CCCceEEEeeCCEEeeeCCeeEE
Q psy14542 72 GMYQCHVSADDDSAQMSAQVILG---GELVEIA-SSNQVVVDVGHRIELHCRVSPK-RLSSAKAWLKDGLVLRRNSDEVL 146 (371)
Q Consensus 72 G~Y~C~~~~~~~~~~~~~~l~v~---~~~~~~~-~~~~~~~~~g~~v~l~C~~~~~-~~~~~v~W~~~~~~~~~~~~~~~ 146 (371)
|.|+|.+.+..+.....+.+.+. ..+|.+. ..+...+.+|+.+.|.|.+.+. |.+..++|++++..+.......
T Consensus 191 G~Y~C~a~n~~~~~~~~~~~~~~~~~~~~P~v~~~~~~~~~~~G~~~~l~C~~~g~~P~p~~v~W~k~g~~~~~~~~~~- 269 (523)
T 2rcj_C 191 RSYSCQVTHEGSTVEKTVAPTECSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPQPVTVSWNSGALTSGVHTFPA- 269 (523)
T ss_pred ceEEEEEEecCcccccceeeeecCCCCcCCEEEecCCCcccccCCceEEEEEEeceeCCCeEEEEecCCcccceEeCCc-
Confidence 99999999987766555554321 1333433 2333344789999999999887 5534899999987643211000
Q ss_pred EEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceee
Q psy14542 147 VLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMF 226 (371)
Q Consensus 147 ~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~ 226 (371)
. ....| .+.. .+.|.|.++..+| |.|+|.|.|. .|...... .+.+. ..|.+..
T Consensus 270 ----~-~~~~g---------~~~~--~s~L~i~~~~~~d--G~Y~C~a~n~-~g~~~~~~---~l~v~-----~~P~~~~ 322 (523)
T 2rcj_C 270 ----V-LQSSG---------LYSL--SSVVTVPSSSLGT--QTYICNVNHK-PSNTKVDK---RVEPL-----SLPSVFL 322 (523)
T ss_pred ----E-ecCCC---------cEEE--EEEEEechhhcCC--ceEEEEEEeC-CCCcceEE---ecCCC-----cCceEEe
Confidence 0 01112 2222 2679999998766 9999999998 66554444 55554 3344332
Q ss_pred eeeeee-eeecCCeEEEEEEeecCCC----CceEEEeCCcccccCCceE---------EecceEEEeccCCCCCeEEEEE
Q psy14542 227 EKHRIL-NVKKDESVILPCSAQGNPL----PTIKWYKQDSPVEESDRIQ---------RIGSSLSISHVEESDSGVWNCV 292 (371)
Q Consensus 227 ~~~~~~-~~~~g~~~~l~C~~~~~p~----~~v~W~~~~~~~~~~~~~~---------~~~~~l~i~~~~~~d~G~Y~C~ 292 (371)
.+.... .+..|+.+.|.|.+.|.|+ +.|.|+++|..+....... ...+.|.|..+..+|+|.|+|.
T Consensus 323 ~~p~~~~~v~~g~~~~l~C~~~g~~p~~~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~G~Y~C~ 402 (523)
T 2rcj_C 323 FPPKPKDTLMISRTPEVTCVVVDVSHEDPQVKFNWYVDGVQVHNAKTKPREQQYNSTYRVVSVLTVLHQNWLDGKEYKCK 402 (523)
T ss_pred cCCCchhhcccCCceEEEEEEecccCCCCceEEEEEECCeEccCCccCCceecCCCcEEEEEEEEECHHHhcCCCeEEEE
Confidence 222111 2678999999999998653 4899999998876543211 1224588999999999999999
Q ss_pred EEcCCCCceeEEEEE----EecCcccccccceEEEEeeeeccccccccccccccceeeeeecCCeEEEeeeeecCCCC--
Q psy14542 293 ANNSEGQDKMQLFIQ----YAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLP-- 366 (371)
Q Consensus 293 a~n~~g~~~~~~~l~----v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p-- 366 (371)
|.|..+.......+. +..+|. +. +..+... .+..| .++|.|.+.|.|+|
T Consensus 403 a~n~~~~~~~~~~~~~~~~~~~~P~---------v~-~~~~~~~--------------~~~~~-~~~l~C~~~g~~p~~~ 457 (523)
T 2rcj_C 403 VSNKALPAPIEKTISKAKGQPREPQ---------VY-TLPPSRE--------------EMTKN-QVSLTCLVKGFYPSDI 457 (523)
T ss_pred EeCCCCCCceeEEEEcccCCCCCCE---------EE-EeCCChH--------------HccCC-ceEEEEEEEeeECCCC
Confidence 999888766555555 345555 44 1221111 23344 49999999998776
Q ss_pred ccccC
Q psy14542 367 TIKYR 371 (371)
Q Consensus 367 ~i~W~ 371 (371)
.|+|+
T Consensus 458 ~v~W~ 462 (523)
T 2rcj_C 458 AVEWE 462 (523)
T ss_pred EEEEE
Confidence 89995
No 30
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*
Probab=100.00 E-value=1.5e-34 Score=243.26 Aligned_cols=270 Identities=17% Similarity=0.262 Sum_probs=196.5
Q ss_pred cccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEE----eeCCeeEEEEccCCcCCCeEEEEEEEcCCC
Q psy14542 8 KSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVL----RRNSDEVLVLDRVQREDAGMYQCHVSADDD 83 (371)
Q Consensus 8 ~~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~----~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~ 83 (371)
.++|.+...+.. +.+.+|++++|.|.+. + .+.|++++... ......+|.|.+++.+|+|.|+|.+.+..+
T Consensus 2 ~p~p~i~~~~~~-~~v~~G~~v~L~C~~~-~----~v~W~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~ 75 (289)
T 3ejj_X 2 DPAPVIEPSGPE-LVVEPGETVTLRCVSN-G----SVEWDGPISPYWTLDPESPGSTLTTRNATFKNTGTYRCTELEDPM 75 (289)
T ss_dssp --CCEEESCSSE-EEECTTCCEEEEEECS-S----CCEEECSCSSSSEECCCSSCCEEEESSCCGGGCEEEEEECCC---
T ss_pred CCCcEecCCCce-EEECCCCCEEEEEEeC-C----cEEEccCCCceEEEeccCCccEEEEeeeccccCEEEEEEEeccCC
Confidence 456777777776 8899999999999543 3 49999876321 111668999999999999999999998878
Q ss_pred CeEEEEEEEEecceeeEecC-CceeeecCCcEEEEEEecCCCCCceEEEee-CCEEeeeCCeeEEEEcccCcCCCeeEEE
Q psy14542 84 SAQMSAQVILGGELVEIASS-NQVVVDVGHRIELHCRVSPKRLSSAKAWLK-DGLVLRRNSDEVLVLDRVQREDAGMYQC 161 (371)
Q Consensus 84 ~~~~~~~l~v~~~~~~~~~~-~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~-~~~~~~~~~~~~~~~~~~~~~~~g~y~~ 161 (371)
.....+.|.|...+..+... ....+.+|+.+.|.|.+.+.+.+..+.|++ ++..+...
T Consensus 76 ~~~~~~~l~V~~~~~~~~~~~~~~~v~~g~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~-------------------- 135 (289)
T 3ejj_X 76 AGSTTIHLYVKDPAHSWNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRK-------------------- 135 (289)
T ss_dssp --CEEEEEEECCSSCSEEESCSEEEEETTSCEEECEEESCGGGGGSEEEEEGGGEECCTT--------------------
T ss_pred cceeEEEEEEeCCCcceecccceEEEecCCceEeEEEccCCCcceEEEEEecCCeecCCC--------------------
Confidence 77888899998433323333 334458999999999999876634599986 55544332
Q ss_pred EEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEE
Q psy14542 162 HIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVI 241 (371)
Q Consensus 162 ~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~ 241 (371)
.++....+..|.|.++..+| .|.|+|.+.+...+...... .+.|.... ..+|.+...+.... +..|+.+.
T Consensus 136 ----~~~~~~~~~~L~i~~v~~~d-~G~Y~C~a~~~~~~~~~~~~---~l~V~~~~-~~~p~i~~~~~~~~-~~~g~~~~ 205 (289)
T 3ejj_X 136 ----TVYFFSPWRGFIIRKAKVLD-SNTYVCKTMVNGRESTSTGI---WLKVNRVH-PEPPQIKLEPSKLV-RIRGEAAQ 205 (289)
T ss_dssp ----CCEEEETTTEEEESSCCGGG-CEEEEEEEEETTEEEECCCE---EEEEESSC-CCCCEEEEESSSEE-CCSSSCEE
T ss_pred ----ccEEECCCCCEEEeeccccc-CEEEEEEEEeCCCccccccE---EEEEEECC-CCCCeEEecCCceE-EEeCCcEE
Confidence 23334445689999999999 99999999843244444444 66665321 13566666666655 78999999
Q ss_pred EEEEeec-CCCCceEEEeCCcccccCCc------eEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEecCcc
Q psy14542 242 LPCSAQG-NPLPTIKWYKQDSPVEESDR------IQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKY 313 (371)
Q Consensus 242 l~C~~~~-~p~~~v~W~~~~~~~~~~~~------~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~ 313 (371)
|.|.+.+ .|.+.+.|++++..+..... .....+.|.|.++..+|+|.|+|.|.|..|....++.|.+..++.
T Consensus 206 l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~s~~L~~~~~~~ 284 (289)
T 3ejj_X 206 IVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVVESHH 284 (289)
T ss_dssp EEEEEEESSSCCEEEEEETTEECCCCEEEEECSSSEEEEEEEEESSCCSSSCEEEEEEEECSSCEEEEEEEEECC----
T ss_pred EEEEeCCCCCceEEEEEECCEEeeccCCcccccceEEeeEEEEEEeecccCCEEEEEEEEcCCCCccccEEEEEEeccc
Confidence 9999998 78899999999987765422 123356899999999999999999999999999999999887765
No 31
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}
Probab=100.00 E-value=1.2e-34 Score=243.94 Aligned_cols=264 Identities=17% Similarity=0.227 Sum_probs=194.1
Q ss_pred cccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEE--eeCCeeEEEEccCCcCCCeEEEEEEEcCCCCe
Q psy14542 8 KSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVL--RRNSDEVLVLDRVQREDAGMYQCHVSADDDSA 85 (371)
Q Consensus 8 ~~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~--~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~ 85 (371)
..+|.|...+.. ..+.+|++++|.|.+. + .+.|++++..+ .......|.|.+++.+|+|.|+|.+.+ +.
T Consensus 10 ~~~P~i~~~~~~-~~v~~G~~v~l~C~~~-~----~i~W~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n--g~- 80 (290)
T 2o26_X 10 PSPPSIHPAQSE-LIVEAGDTLSLTCIDP-D----FVRWTFKTYFNEMVENKKNEWIQEKAEATRTGTYTCSNSN--GL- 80 (290)
T ss_dssp --CCEESSCSSE-EEEETTSCEEEEEECT-T----EEEEEEECSSSCEEEECSSEEEETTCCGGGCEEEEEEESS--SC-
T ss_pred CCCCEEeCCCCe-EEEcCCCcEEEEECCC-C----cEEEecCCcceeeecCCCceEEEeccCHHhCeEEEEEeeC--Cc-
Confidence 346777766666 8899999999999644 3 89999988655 111448999999999999999999998 33
Q ss_pred EEEEEEEEecceeeEecCCceeeecCCcEEEEEEecCCCCCceEEEe-eCCEEeeeCCeeEEEEcccCcCCCeeEEEEEe
Q psy14542 86 QMSAQVILGGELVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWL-KDGLVLRRNSDEVLVLDRVQREDAGMYQCHIE 164 (371)
Q Consensus 86 ~~~~~l~v~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~v~W~-~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~ 164 (371)
...+.|.|...+..+...+...+.+|+.+.|.|.+.+ +..+.+.|+ +++..+....
T Consensus 81 ~~~~~l~V~~~~~~~~~~~~~~~~~g~~v~l~C~~~~-p~~~~v~W~~~~g~~l~~~~---------------------- 137 (290)
T 2o26_X 81 TSSIYVFVRDPAKLFLVGLPLFGKEDSDALVRCPLTD-PQVSQYSLIECDGKSLPTDL---------------------- 137 (290)
T ss_dssp EEEEEEEEECSSCCBCCCCCEEEETTSCEEECCCBSC-CSCEEEEEEETTSCCCCTTC----------------------
T ss_pred cEEEEEEEeCCCcccccccceEEecCCeEEEeCcCCC-CCCceEEEEeCCCcCCCCCC----------------------
Confidence 7778888874333333344445589999999999986 323799995 5776654321
Q ss_pred CCceeEeccceEEEEEeecCCccc-eeEEEeeccccceeee-eeccceeeeecchhccccceeeeeeeeeeeecCCeEEE
Q psy14542 165 DGKYHMLSSGELIIHQVDESDRYR-SYQCRGVNKLTGASLL-SVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVIL 242 (371)
Q Consensus 165 ~~~~~~~~~~~l~i~~~~~~d~~g-~y~C~~~~~~~~~~~~-~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l 242 (371)
++....+..|.|.++..+| .| .|+|.+.|. .+.... .. .+.|.... ..+|.+...+.... +..|+.+.|
T Consensus 138 --~~~~~~~~~L~i~~v~~~d-~G~~Y~C~a~n~-~~~~~s~~~---~l~V~~~~-~~~P~i~~~~~~~~-v~~G~~v~l 208 (290)
T 2o26_X 138 --TFVPNPKAGITIKNVKRAY-HRLCVRCAAQRD-GTWLHSDKF---TLKVREAI-KAIPVVSVPETSHL-LKKGDTFTV 208 (290)
T ss_dssp --EEEEETTTEEEEESCCGGG-TTCEEEEEEEET-TEEEECCCE---EEEEECCC-CSCCEEECSCSBCC-CCTTCCEEE
T ss_pred --ceeeCCCCCEEEecccHHH-CCCEEEEEEEEC-CceEEeEEE---EEEEEeCC-CCCCccccCCCcce-EecCCcEEE
Confidence 3333344689999999999 99 999999997 444222 23 55554211 14666666655555 999999999
Q ss_pred EEEeecCCCCc-eEEEeCCccc----ccCCc-------eEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEec
Q psy14542 243 PCSAQGNPLPT-IKWYKQDSPV----EESDR-------IQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAH 310 (371)
Q Consensus 243 ~C~~~~~p~~~-v~W~~~~~~~----~~~~~-------~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~ 310 (371)
.|.+.|.|.+. +.|++++..+ ..... .....+.|.|.++..+|+|.|+|.|.|..|.....+.|.|.+
T Consensus 209 ~C~~~g~p~p~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~ 288 (290)
T 2o26_X 209 VCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTTLKVVE 288 (290)
T ss_dssp EEEEEESSTTCEEEEEEESSSEEECCCEECCEEEEETTEEEEEEEEEESSCCSSSCEEEEEEEECSSCEEEEEEEECC--
T ss_pred EEEEecCCcceeEEEecCCCCCccceeecccccccCceeeEEEEEEEEcCCCcccCeEEEEEEeCCCCcEEEEEEEEEEe
Confidence 99999999997 9999999873 32222 113356899999999999999999999999999999998887
Q ss_pred Cc
Q psy14542 311 GK 312 (371)
Q Consensus 311 ~p 312 (371)
+|
T Consensus 289 ~P 290 (290)
T 2o26_X 289 KG 290 (290)
T ss_dssp --
T ss_pred CC
Confidence 65
No 32
>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R
Probab=100.00 E-value=2e-34 Score=245.15 Aligned_cols=268 Identities=16% Similarity=0.210 Sum_probs=190.4
Q ss_pred eCCCcEEEeccCcEEEEEEecCCCCC----CeeEEEeCCEEE-------------eeC--------------CeeEEEEc
Q psy14542 16 SPSGQVVVDVGHRIELHCRVSPKRLS----SAKAWLKDGLVL-------------RRN--------------SDEVLVLD 64 (371)
Q Consensus 16 ~p~~~~~~~~G~~v~l~C~~~~~~~~----~~~~W~~~~~~~-------------~~~--------------~~~~l~i~ 64 (371)
.|.. +.+..|++++|.|.+....+. ..+.|+|++... ... .+.+|.|.
T Consensus 6 ~P~~-v~~~~G~~v~L~C~v~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~I~ 84 (313)
T 4fqp_A 6 APTQ-VPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLRMF 84 (313)
T ss_dssp CCSE-ECCBTTSCEEECCEEECCTTSCCCCCEEEEEETTSSSCSEEEETTTEEEESSTTTEEESSCCTTSCCCBCCEEEC
T ss_pred CCCE-EEEecCCCEEEEEEEECCCCCccceEEEEEEECCCCcceEEEecCCCceeccCcceEEEeeccCCcccceEEEEC
Confidence 3444 788899999999976543222 248999976421 100 34679999
Q ss_pred cCCcCCCeEEEEEEEc-CCCCeEEEEEEEEecceeeEecCCceeeecCCcEEEEEEecC-CCCCceEEEeeCCEEeeeCC
Q psy14542 65 RVQREDAGMYQCHVSA-DDDSAQMSAQVILGGELVEIASSNQVVVDVGHRIELHCRVSP-KRLSSAKAWLKDGLVLRRNS 142 (371)
Q Consensus 65 ~~~~~d~G~Y~C~~~~-~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~v~l~C~~~~-~~~~~~v~W~~~~~~~~~~~ 142 (371)
+++.+|+|.|+|.+.+ ..+.....+.|.+...+..........+..|+.+.+.|.+.+ .|. +.+.|++++..+....
T Consensus 85 ~v~~~D~G~Y~C~v~~~~~~~~~~~~~l~v~~~P~~~~~~~~~~~~~~~~~~~~C~~~~~~P~-~~i~W~~~~~~~~~~~ 163 (313)
T 4fqp_A 85 GLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQLTGEPVPMARCVSTGGRPP-AQITWHSDLGGMPNTS 163 (313)
T ss_dssp SCCGGGCEEEEEEEECSSSCEEEEEEEECCBBCCEEEEEECCBCCCSSCEEEEEEEEEEEBSC-CEEEEEETTCCEEEEE
T ss_pred cCChhhCEEEEEEEeeccCcceeeeeeeeeccCCcceecccceEeecCceEEEEEEccCccCC-cEEEeecCCccccccc
Confidence 9999999999999864 344556677777773333333333333467888999998864 455 8999999988765432
Q ss_pred eeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhcccc
Q psy14542 143 DEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSA 222 (371)
Q Consensus 143 ~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p 222 (371)
.. ..... +.+.. .+.|.|.....+| +|.|+|.+.|. .+...... ...|.|. .+|
T Consensus 164 ~~-------~~~~~---------~~~~~--~s~l~i~~~~~~d-~g~Y~C~a~n~-~~~~~~~~-~~~l~V~-----~~P 217 (313)
T 4fqp_A 164 QV-------PGFLS---------GTVTV--TSLWILVPSSQVD-GKNVTCKVEHE-SFEKPQLL-TVNLTVY-----YPP 217 (313)
T ss_dssp EE-------ECSST---------TCEEE--EEEEEECCCGGGT-TCEEEEEEECT-TSSSCEEE-EEECCBC-----EEE
T ss_pred ee-------eeecc---------ccccc--ceeeeeccccccc-CeeEEEEEEcc-CcCcccee-eeecccc-----cCC
Confidence 11 01111 12222 1568888888999 99999999987 44332222 1155565 667
Q ss_pred ceeeeeeeeeeeecCCeEEEEEEeecCCCC-ceEEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCCCce
Q psy14542 223 AKMFEKHRILNVKKDESVILPCSAQGNPLP-TIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDK 301 (371)
Q Consensus 223 ~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~ 301 (371)
.+.........+..|+.++|.|.+.|+|.| .|.|++++..+... ....+++|.|.++..+|+|.|+|.|.|..|...
T Consensus 218 ~v~~~~~~~~~~~~g~~v~l~C~~~g~P~p~~v~W~~~~~~l~~~--~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~ 295 (313)
T 4fqp_A 218 EVSISGYDNNWYLGQNEATLTCDARSNPEPTGYNWSTTMGPLPPF--AVAQGAQLLIRPVDKPINTTLICNVTNALGARQ 295 (313)
T ss_dssp EEEEECCCSCEETTCCCEEEEEEEEEESCCCEEEEEETTBSCCTT--EEEETTEEEECCCSSCCEEEEEEEEECSSCEEE
T ss_pred ccccccccceeecCCCeEEEEEEecCCCCCcEEEEEECCEECCCc--eEEeCCEEEECcCChhhCEEEEEEEEeCCCcEE
Confidence 766554444436778999999999999998 59999999988654 334567899999999999999999999999999
Q ss_pred eEEEEEEecCcc
Q psy14542 302 MQLFIQYAHGKY 313 (371)
Q Consensus 302 ~~~~l~v~~~p~ 313 (371)
.++.|.|.++|+
T Consensus 296 ~~~~l~V~~~PP 307 (313)
T 4fqp_A 296 AELTVQVKEGPP 307 (313)
T ss_dssp EEEEEEEECCC-
T ss_pred EEEEEEEEeCCC
Confidence 999999998877
No 33
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A
Probab=100.00 E-value=1.9e-34 Score=252.38 Aligned_cols=253 Identities=20% Similarity=0.321 Sum_probs=201.3
Q ss_pred CCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEee---------CCeeEEEEccCCcCCCeEEEEEEEcCCCCeEE-
Q psy14542 18 SGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRR---------NSDEVLVLDRVQREDAGMYQCHVSADDDSAQM- 87 (371)
Q Consensus 18 ~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~---------~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~- 87 (371)
.....+.+|+.++|.|....+.|.+.+.|++++..+.. ...+.|.|.+++.+|+|.|+|.+.+..+....
T Consensus 108 ~~~~~v~~G~~v~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~ 187 (382)
T 1cs6_A 108 RDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDFITKS 187 (382)
T ss_dssp CCCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCCCCSSEEECTTTCCEEESSCCGGGCEEEEEEEEEEETTEEEE
T ss_pred CCceEEecCCcEEEEeCCCCCCCCcEEEEEECCCccccccCceEEEecCceEEEEEeeCcccCeeEEEEEEEccccccce
Confidence 33478999999999996566678889999998754321 14468999999999999999999987654322
Q ss_pred ----EEEEEEec-----ceeeEecC-C-ceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCC
Q psy14542 88 ----SAQVILGG-----ELVEIASS-N-QVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDA 156 (371)
Q Consensus 88 ----~~~l~v~~-----~~~~~~~~-~-~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (371)
.+.|.+.. .+|.+... + ...+.+|+.++|.|.+.+.+. +.+.|++++..+....
T Consensus 188 ~~s~~~~l~v~~~~~~~~~P~~~~~~~~~~~~~~G~~v~l~C~~~g~p~-~~i~W~~~~~~~~~~~-------------- 252 (382)
T 1cs6_A 188 VFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPV-PQIKWRKLDGSQTSKW-------------- 252 (382)
T ss_dssp EECCCEEEEEESCCCCCEEEEEEECCCSEEEEETTCCEEEECEEEEESC-CEEEEEECCSCCSCCC--------------
T ss_pred eEccceeeccchhhcccCCCceeccCCCceEEeCCCeEEEEEEEccCCC-CEEEEEECCcccccEE--------------
Confidence 23444431 23444332 2 334489999999999988877 8999999876543210
Q ss_pred eeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeec
Q psy14542 157 GMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKK 236 (371)
Q Consensus 157 g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~ 236 (371)
......|.|.++..+| .|.|+|.+.|. .|...... .+.|. .+|.+...+.... +..
T Consensus 253 -------------~~~~~~L~i~~~~~~d-~G~Y~C~a~n~-~g~~~~~~---~l~V~-----~~p~~~~~~~~~~-~~~ 308 (382)
T 1cs6_A 253 -------------LSSEPLLHIQNVDFED-EGTYECEAENI-KGRDTYQG---RIIIH-----AQPDWLDVITDTE-ADI 308 (382)
T ss_dssp -------------SBSSSEEEECSCCGGG-CEEEEEEEEET-TEEEEEEE---EEEEE-----EEEEEEECCCCEE-EET
T ss_pred -------------ecCCcEEEEccCChhh-CEEEEEEEEcC-CCeEEEEE---EEEEe-----cCCCcccCCCccE-EcC
Confidence 0112679999999999 99999999998 77766666 78887 6677776666666 899
Q ss_pred CCeEEEEEEeecCCCCceEEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEe
Q psy14542 237 DESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYA 309 (371)
Q Consensus 237 g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 309 (371)
|+.+.|.|.+.|.|.+.+.|+++|..+....++...++.|.|.++..+|+|.|+|.|.|..|....++.|.|.
T Consensus 309 g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~ 381 (382)
T 1cs6_A 309 GSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGGELRFSKLVLEDSGMYQCVAENKHGTVYASAELTVQ 381 (382)
T ss_dssp TCCEEEECEEEEESCCEEEEEETTEECCCCSSEEEETTEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred CCeEEEEEEeeeecCCEEEEEECCEECCCCceEEEECCEEEECcCCcccCEEEEEEEEeCCCeEEEEEEEEEe
Confidence 9999999999999999999999999998888888888899999999999999999999999999999999885
No 34
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*
Probab=100.00 E-value=3.1e-34 Score=252.91 Aligned_cols=272 Identities=21% Similarity=0.295 Sum_probs=207.2
Q ss_pred eeEEecccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC-------CeeEEEEccCCcCC-CeEE
Q psy14542 3 LFIQVKSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN-------SDEVLVLDRVQRED-AGMY 74 (371)
Q Consensus 3 ~~~~v~~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~-------~~~~l~i~~~~~~d-~G~Y 74 (371)
+.|.|...+.+...+..+..+.+|++++|.|.+..+.|.+.+.|++++...... .+++|.|.+++.+| +|.|
T Consensus 108 ~~l~V~~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~~G~Y 187 (404)
T 3p3y_A 108 IRLQVSKSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNGDLYFSNVMLQDMQTDY 187 (404)
T ss_dssp EEEEECCCCCCCCCCCCCEEEETTSCEEECCCCCCCSSCCEEEEECTTSCBCCCCSSEEECTTSCEEESSCCSGGGSSCB
T ss_pred EEEEEeccCccccCCCCCeEEccCCcEEEEeCCCCCCCCCeEEEeCCCccccCCCCcEEEcCCCcEEEEeeeeccCCcce
Confidence 345555544443333333789999999999966577888999999986432211 45689999999999 5999
Q ss_pred EEEEEcCCCCeEE---EEEEEEecc------eeeEecCC----ceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeC
Q psy14542 75 QCHVSADDDSAQM---SAQVILGGE------LVEIASSN----QVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN 141 (371)
Q Consensus 75 ~C~~~~~~~~~~~---~~~l~v~~~------~~~~~~~~----~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~ 141 (371)
+|.+.+..+.... .+.|.|... +|.+.... ...+.+|+.+.|.|.+.+.+. +.+.|++++..+...
T Consensus 188 ~C~a~n~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~~~~G~~v~l~C~~~g~p~-~~v~W~~~~~~~~~~ 266 (404)
T 3p3y_A 188 SCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPT-PDIAWYKKGGDLPSD 266 (404)
T ss_dssp EEEEECTTTCCEEECCCBCEEEECCSCCCCCCCCBSSSCSSEEEEEEETTSCEEEECCBCCSSC-CEEEEEETTBCCCTT
T ss_pred EEEEEeccccceeccCceeEEEeccCCccccCCccccccCCCCCceEecCCCEEEEEEECCCCC-CcEEEEECCEECCCC
Confidence 9999987765422 244555421 22222211 223488999999999998877 799999999877544
Q ss_pred CeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccc
Q psy14542 142 SDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLS 221 (371)
Q Consensus 142 ~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~ 221 (371)
.. .....+..|.|.++..+| .|.|+|.+.|. .|...... .|.|. .+
T Consensus 267 ~~------------------------~~~~~~~~L~i~~~~~~d-~G~Y~C~a~n~-~g~~~~~~---~l~V~-----~~ 312 (404)
T 3p3y_A 267 KA------------------------KFENFNKALRITNVSEED-SGEYFCLASNK-MGSIRHTI---SVRVK-----AA 312 (404)
T ss_dssp TE------------------------EEEGGGTEEEESSCCGGG-CEEEEEEEECS-SCEEEEEE---EEEEE-----EE
T ss_pred cc------------------------cccccCceEEEccCCHhH-CEEEEEEEEeC-CCcEEEEE---EEEEe-----CC
Confidence 21 111123689999999999 99999999998 77766666 78887 67
Q ss_pred cceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccCC---ceEEecceEEEeccCCCCCeEEEEEEEcCCC
Q psy14542 222 AAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESD---RIQRIGSSLSISHVEESDSGVWNCVANNSEG 298 (371)
Q Consensus 222 p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~---~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g 298 (371)
|.+...+.... +..|+.+.|.|.+.|+|.+.+.|+++|..+.... +....++.|.|.++..+|+|.|+|.|.|..|
T Consensus 313 p~~~~~~~~~~-v~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G 391 (404)
T 3p3y_A 313 PYWLDEPKNLI-LAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAGDTIIFRDTQISSRAVYQCNTSNEHG 391 (404)
T ss_dssp EEEEECCCCEE-ECTTCCEEEECEEEEESCCEEEEEETTEEGGGSCCCTTEEEETTEEEESSCCSSCCCEEEEEEEETTE
T ss_pred CeeeccCCcce-eecCCcEEEEEEccccCCCceEEEECCEecCCCCCCceEEecCCEEEEeecCHHHCEEEEEEEEeCCC
Confidence 77777766666 8999999999999999999999999999886553 3445677999999999999999999999999
Q ss_pred CceeEEEEEEec
Q psy14542 299 QDKMQLFIQYAH 310 (371)
Q Consensus 299 ~~~~~~~l~v~~ 310 (371)
....++.|.|.+
T Consensus 392 ~~~~~~~l~V~d 403 (404)
T 3p3y_A 392 YLLANAFVSVLD 403 (404)
T ss_dssp EEEEEEEEEEC-
T ss_pred cEEEEEEEEEEe
Confidence 999999988864
No 35
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=100.00 E-value=2.2e-35 Score=253.56 Aligned_cols=272 Identities=20% Similarity=0.272 Sum_probs=135.0
Q ss_pred ceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC-----CeeEEEEccCCcCCCeEEEEEEEcCCCCe
Q psy14542 11 LSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN-----SDEVLVLDRVQREDAGMYQCHVSADDDSA 85 (371)
Q Consensus 11 ~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~-----~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~ 85 (371)
|.+.. |.. ..+.+|++++|.|.+....|.+.+.|+|+|..+... ...+|.|.+++.+|+|.|+|.+.+. +..
T Consensus 10 p~~~~-~~~-~~v~~G~~v~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~-~~~ 86 (334)
T 1ry7_B 10 PEPGQ-QEQ-LVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLVGPQRLQVLNASHEDSGAYSCRQRLT-QRV 86 (334)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCC-cCc-EEEecCCcEEEEeeCCCCCCCcceEEEECCeeCCCcccEEeccceEEEeecccccCEEEEEEEEeC-CeE
Confidence 33433 555 789999999999976655567899999999877654 4678999999999999999999988 666
Q ss_pred EEEEEEEEecce---------------------eeEecCC-----ceeeecCCcEEEEEEecCCCCCceEEEeeCCEEee
Q psy14542 86 QMSAQVILGGEL---------------------VEIASSN-----QVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLR 139 (371)
Q Consensus 86 ~~~~~l~v~~~~---------------------~~~~~~~-----~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~ 139 (371)
...+.|.|...+ |.+.... ...+.+|+.+.|.|.+.+.+. +.+.|++++..+.
T Consensus 87 ~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~~~~~~~v~~g~~v~l~C~~~g~p~-~~v~W~~~~~~~~ 165 (334)
T 1ry7_B 87 LCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPT-PSISWLKNGREFR 165 (334)
T ss_dssp --------------------------------CCCCSCCTTCCCCEEEEETTCCEEEECCCCCSSC-CEEECCBTTBCCC
T ss_pred EEEEEEEEeccCccccccccccccccccccCCCCEEeccccccceeEEecCCCcEEEEEEccCCCC-CeEEEEECCEECc
Confidence 677777776321 2222111 133478999999999998877 8999999998765
Q ss_pred eCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhc
Q psy14542 140 RNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRL 219 (371)
Q Consensus 140 ~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~ 219 (371)
...... ..........|.|.+++.+| .|.|+|.+.|. .+...... .+.|.....
T Consensus 166 ~~~~~~--------------------~~~~~~~~~~L~i~~v~~~d-~G~Y~C~a~n~-~g~~~~~~---~l~V~~~~~- 219 (334)
T 1ry7_B 166 GEHRIG--------------------GIKLRHQQWSLVMESVVPSD-RGNYTCVVENK-FGSIRQTY---TLDVLERSP- 219 (334)
T ss_dssp TTSSTT--------------------CCCCCTTTTEEEECSCCGGG-CCCEEEEEEET-TEEEEEEE---EEEEECCCC-
T ss_pred cccccc--------------------ceecccceEEEEECCCCccc-CEEEEEEEEeC-CCCEEEEE---EEEEecCCC-
Confidence 442110 00001123579999999999 99999999998 66666655 777764321
Q ss_pred cccceee-eeeeeeeeecCCeEEEEEEeecCCCCceEEEe----CCcccccCCce--E--E---------ecceEEEecc
Q psy14542 220 LSAAKMF-EKHRILNVKKDESVILPCSAQGNPLPTIKWYK----QDSPVEESDRI--Q--R---------IGSSLSISHV 281 (371)
Q Consensus 220 ~~p~~~~-~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~----~~~~~~~~~~~--~--~---------~~~~l~i~~~ 281 (371)
.+|.+.. .+.... +..|+.+.|.|.+.|.|.+.+.|++ +|..+....+. . . ..+.|.|.++
T Consensus 220 ~~p~~~~~~~~~~~-~~~G~~v~l~C~~~g~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v 298 (334)
T 1ry7_B 220 HRPILQAGLPANQT-AVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNV 298 (334)
T ss_dssp SSCBCCTTCSCCEE-EESSCCEEECCCCBCSSCEEEEEEECCCGGGCSBCTTSSBCCCCCCCSSCSCSCTTCCCEEECSC
T ss_pred CCCceEecCCCceE-EeCCCCEEEEEEEecCCCCeEEEEECCcCCCccccCCCCeeEEEeecCccccccccccEEEEccC
Confidence 1233332 233444 8899999999999999999999999 66666543321 1 0 1137999999
Q ss_pred CCCCCeEEEEEEEcCCCCceeEEEEEEecCcc
Q psy14542 282 EESDSGVWNCVANNSEGQDKMQLFIQYAHGKY 313 (371)
Q Consensus 282 ~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~ 313 (371)
..+|+|.|+|.|.|..|....++.|.|...|.
T Consensus 299 ~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~~ 330 (334)
T 1ry7_B 299 TFEDAGEYTCLAGNSIGFSHHSAWLVVLPAEE 330 (334)
T ss_dssp CTTSCSEEEEEEEESSCCEEEEEEEEEECSCC
T ss_pred CHHHCEEEEEEEeCCCCeEEEEEEEEEEECCC
Confidence 99999999999999999999999999987665
No 36
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R
Probab=100.00 E-value=7.6e-36 Score=284.46 Aligned_cols=323 Identities=21% Similarity=0.326 Sum_probs=69.0
Q ss_pred cccceEEEeCCCcEEEeccCcEEEEEEecCC-CCCCeeEEEeCCEEEeeC-----------------CeeEEEEccCCcC
Q psy14542 8 KSSLSIEMSPSGQVVVDVGHRIELHCRVSPK-RLSSAKAWLKDGLVLRRN-----------------SDEVLVLDRVQRE 69 (371)
Q Consensus 8 ~~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~-~~~~~~~W~~~~~~~~~~-----------------~~~~l~i~~~~~~ 69 (371)
...+.+.+.|.....+.+|++++|.|.+... .+...+.|++++..+... ....|.|.+++.+
T Consensus 221 ~~~~~v~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~ 300 (772)
T 3v2a_R 221 YRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRS 300 (772)
T ss_dssp CCEEEEEEECCSCEEEETTCCEEEEEEEEECTTCCCEEEEECC--------CEEEEC-----CCCEEEEEEEEESSCCST
T ss_pred CccceeeeCCCCceEEecCCcEEEEEEEecCCCCceeEEEecCCccCCCceeeeccccccccccceEEEEEEEECcCCcC
Confidence 3466778888776799999999999976533 456789999988764321 3457999999999
Q ss_pred CCeEEEEEEEcCCCCeEEEEEEEEecceeeEecC----CceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCC---
Q psy14542 70 DAGMYQCHVSADDDSAQMSAQVILGGELVEIASS----NQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNS--- 142 (371)
Q Consensus 70 d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~----~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~--- 142 (371)
|+|.|+|.+.+..+.....+.|.|. .+|.+... ....+.+|+.++|.|.+.+.+. +.+.|++++..+....
T Consensus 301 d~G~Y~C~~~~~~~~~~~~~~l~V~-~~p~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~-~~v~W~~~g~~l~~~~~~~ 378 (772)
T 3v2a_R 301 DQGLYTCAASSGLMTKKNSTFVRVH-EKPFVAFGSGMESLVEATVGERVRIPAKYLGYPP-PEIKWYKNGIPLESNHTIK 378 (772)
T ss_dssp TCSEEEEEEECSSCEEEEEEEEEEE-CCCC--------------------------------------------------
T ss_pred CCeEEEEEEEcCCcceeEEEEEEEe-CCCeeEeccCCCCcEEEcCCCcEEEEEEEeeeCC-CeEEEEECCEeCCCCceEc
Confidence 9999999999988877888889988 44444322 2334488999999999998777 8999999998776532
Q ss_pred -eeEEEEcccCcCCCeeEEEEEeCCceeE---------------------------------------------------
Q psy14542 143 -DEVLVLDRVQREDAGMYQCHIEDGKYHM--------------------------------------------------- 170 (371)
Q Consensus 143 -~~~~~~~~~~~~~~g~y~~~~~~~~~~~--------------------------------------------------- 170 (371)
...+.+.++..+|.|.|+|.+.+.....
T Consensus 379 ~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~~~l~v~~~P~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W 458 (772)
T 3v2a_R 379 AGHVLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHW 458 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cceeEEEecCChhcCceEEEEEEECCcCeEEEEEEEEEEecCCcccccccCCCccccCCCCcEEEEeEeccCCCCcEEEE
Confidence 2577888899999999997665321100
Q ss_pred ec-----------------------------------------------------cceEEEEEeecCCccceeEEEeecc
Q psy14542 171 LS-----------------------------------------------------SGELIIHQVDESDRYRSYQCRGVNK 197 (371)
Q Consensus 171 ~~-----------------------------------------------------~~~l~i~~~~~~d~~g~y~C~~~~~ 197 (371)
.. ...|.|.++ +| .|.|+|.+.|.
T Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~L~i~~~--~d-~G~Y~C~a~N~ 535 (772)
T 3v2a_R 459 YWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAA--NV-SALYKCEAVNK 535 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEcCCccccccccccccccCcCccccccccccccCCCcEEEeccceeeccCcceEEEEEEEeec--cc-CeEEEEEEEcc
Confidence 00 012223332 57 89999999998
Q ss_pred ccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccCCceE-------
Q psy14542 198 LTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQ------- 270 (371)
Q Consensus 198 ~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~------- 270 (371)
.|...... .+.|. .+|.+...+. .. +.+|+.+.|.|.+.+.|.+.+.|++++..+.......
T Consensus 536 -~g~~~~~~---~l~V~-----~~p~i~~~p~-~~-~~~G~~v~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~ 604 (772)
T 3v2a_R 536 -VGRGERVI---SFHVT-----RGPEITLQPD-MQ-PTEQESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCK 604 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -ccccceeE---EEEEE-----CCceeeccCC-cc-cccCCceEEEEeccCCCCCCcEEEEcCCcccccccCcccccccc
Confidence 77666555 77777 4565554443 23 7889999999999999999999999887654321110
Q ss_pred -----------------EecceEEEeccCCCCCeEEEEEEEcCCCCce--eEEEEEE--ecCcccccccceEEEEeeeec
Q psy14542 271 -----------------RIGSSLSISHVEESDSGVWNCVANNSEGQDK--MQLFIQY--AHGKYHMLSSGELIIHQVDEK 329 (371)
Q Consensus 271 -----------------~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~--~~~~l~v--~~~p~~~~~~~~~~~~~~~~~ 329 (371)
.....|.|.++..+|+|.|+|.|.|..|... ....|.| ..+|. +. .
T Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~s~~~~l~v~~~~~P~---------~~--~-- 671 (772)
T 3v2a_R 605 NLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLERVAPT---------IT--G-- 671 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccceeeccceeeecCCCceEEEEECCCCccCCcEEEEEEEeCCCCeEEEEEEeecccccCCCE---------ee--c--
Confidence 0112499999999999999999999665432 2334444 45565 33 1
Q ss_pred cccccccccccccceeeeeecCCeEEEeeeeecCCCCccccC
Q psy14542 330 NKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKYR 371 (371)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~ 371 (371)
.+....+.+|+.++|.|.+.|.|+|.|+|+
T Consensus 672 ------------~~~~~~v~~g~~~~l~C~~~g~P~p~v~W~ 701 (772)
T 3v2a_R 672 ------------NLENQTTSIGESIEVSCTASGNPPPQIMWF 701 (772)
T ss_dssp ------------------------------------------
T ss_pred ------------CCCceEEeCCCCEEEEEEeCccCCCeEEEE
Confidence 112236889999999999999999999996
No 37
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Probab=100.00 E-value=3.4e-33 Score=231.47 Aligned_cols=242 Identities=19% Similarity=0.301 Sum_probs=185.8
Q ss_pred cceEEEeCCCcEEEeccCcEEEEEEecCCCCCC-eeEEEeCCEEEeeCCeeEEEEccCCcCCCeEEEEEEEcCCCCeEEE
Q psy14542 10 SLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSS-AKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHVSADDDSAQMS 88 (371)
Q Consensus 10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~-~~~W~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~ 88 (371)
+|.+.+.|.. ..+.+|+.+.|.|.+ .+.|.+ .+.|+++|..+.. ....|.|.+++.+|+|.|+|.+.+..+.. .
T Consensus 1 kP~i~~~p~~-~~v~~G~~v~l~C~~-~~~~~~~~~~W~~~g~~~~~-~~~~l~i~~~~~~d~G~Y~C~~~~~~~s~--~ 75 (262)
T 3rjd_A 1 KAVITLQPPW-VSVFQEETVTLHCEV-LHLPGSSSTQWFLNGTATQT-STPSYRITSASVNDSGEYRCQRGLSGRSD--P 75 (262)
T ss_dssp CCEEEESSCC-SEEETTCCEEEEEEC-SSCCCTTCEEEEETTEECSC-CSSEEEESSCCGGGCEEEEEEESSSCCCC--C
T ss_pred CCeEecCCCc-EEeeCCCeEEEEEEC-CCCCCCceEEEEECCEEeec-cCCeEEEecCCcccCeEEEEEEecCCccc--c
Confidence 4678888888 889999999999965 455555 8999999998865 57789999999999999999998765543 5
Q ss_pred EEEEEecceeeEecCCceeeecCCcEEEEEEe-cCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCc
Q psy14542 89 AQVILGGELVEIASSNQVVVDVGHRIELHCRV-SPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGK 167 (371)
Q Consensus 89 ~~l~v~~~~~~~~~~~~~~~~~g~~v~l~C~~-~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~ 167 (371)
+.|.|. .++.........+.+|+.+.|.|.+ .+.+. +.+.|++++..+....
T Consensus 76 ~~l~v~-~~~~~~~~~~~~~~~g~~v~l~C~~~~~~p~-~~v~W~~~g~~~~~~~------------------------- 128 (262)
T 3rjd_A 76 IQLEIH-RGWLLLQVSSRVFTEGEPLALRCHAWKDKLV-YNVLYYRNGKAFKFFH------------------------- 128 (262)
T ss_dssp EEEEEE-CSSEEEEESCSEEETTSCEEEEEEEGGGCCC-EEEEEEETTEEEEEEE-------------------------
T ss_pred EEEEEe-ccceEecCCCeEEecCCeEEEEEEccCCCCC-ceEEEEECCccccccC-------------------------
Confidence 666666 3333333444455899999999999 55555 8999999998775321
Q ss_pred eeEeccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEee
Q psy14542 168 YHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQ 247 (371)
Q Consensus 168 ~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~ 247 (371)
.+..|.|.+++.+| .|.|+|.+.+. .+...... .+.|... ..+|.+...+ ... +..|+.+.|.|.+.
T Consensus 129 ----~~~~l~i~~~~~~d-~G~Y~C~~~n~-~~~~~~~~---~l~V~~~--~~~p~~~~~~-~~~-~~~g~~~~l~C~~~ 195 (262)
T 3rjd_A 129 ----WNSNLTILKTNISH-NGTYHCSGMGK-HRYTSAGI---SVTVKEL--FPAPVLNASV-TSP-LLEGNLVTLSCETK 195 (262)
T ss_dssp ----ECCCEEESSCCGGG-CEEEEEEEESS-SEEEEECE---EEEEECS--SCCCEEEESS-CSS-EETTCCEEEEEECC
T ss_pred ----CCCeEEEEECChhh-CEEEEEEEeCC-CCccccce---EEEeccC--CCCCeEeecC-cee-ecCCCeEEEEeEcc
Confidence 12578999999999 99999999998 55555555 6666632 1234444443 334 88999999999999
Q ss_pred cCCC-Cc----eEEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCCCc
Q psy14542 248 GNPL-PT----IKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQD 300 (371)
Q Consensus 248 ~~p~-~~----v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~ 300 (371)
+.|. +. +.|++++..+... ...+.|.|.++..+|+|.|+|.|.|..|..
T Consensus 196 ~~p~~p~~~~~~~w~~~~~~~~~~----~~~~~L~i~~v~~~d~G~Y~C~a~n~~G~~ 249 (262)
T 3rjd_A 196 LLLQRPGLQLYFSFYMGSKTLRGR----NTSSEYQILTARREDSGLYWCEAATEDGNV 249 (262)
T ss_dssp CCCC-----EEEEEEETTEEEEEE----ESCCEEEESSCCGGGCEEEEEEEEETTSSC
T ss_pred cCCCCCCccEEEEEEeCCcEeccc----CCCceEEEEEechhhCeEEEEEEEcccCce
Confidence 9876 43 7899998876532 245689999999999999999999999974
No 38
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R
Probab=100.00 E-value=4.7e-35 Score=249.41 Aligned_cols=263 Identities=18% Similarity=0.260 Sum_probs=195.4
Q ss_pred EEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC---------CeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEEEE
Q psy14542 21 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN---------SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQV 91 (371)
Q Consensus 21 ~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~---------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l 91 (371)
+.+.+|+.+.|.|.+....+.+.+.|+|++..+... ...+|.|.+++.+|+|.|+|.+.+..+.....+.+
T Consensus 15 ~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~v 94 (315)
T 1itb_B 15 LVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYCLRIKISA 94 (315)
T ss_dssp CEEETTSCCCCBCCCCSCCCSSCCCEECTTSCSCSCCCTTSSSEECSSBEECTTCCGGGCSCCEECCCSSSCCCCEECCC
T ss_pred EEEcCCCcEEEEeeccCcCCCceEEEEeCCCcCccccccCCcEeccCCeEEECCCChhhCEEEEEEEeCCceEEEEEEEE
Confidence 789999999999965544447899999998543211 45589999999999999999999988877777777
Q ss_pred EEecceeeEecCC----ceeeecCCcEEEEEEe------cCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEE
Q psy14542 92 ILGGELVEIASSN----QVVVDVGHRIELHCRV------SPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQC 161 (371)
Q Consensus 92 ~v~~~~~~~~~~~----~~~~~~g~~v~l~C~~------~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~ 161 (371)
.+...+|.+...+ ...+..|+.+.|.|.+ .+.|. +.+.|++++..+.....
T Consensus 95 ~v~~~~p~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~g~p~-~~i~W~k~~~~l~~~~~------------------ 155 (315)
T 1itb_B 95 KFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNEL-PKLQWYKDCKPLLLDNI------------------ 155 (315)
T ss_dssp EEECCCTTSSSCGGGEEEEEEETTSCEEEECSSCTTTCTTTTCC-CCCEEEETTEECCCCSS------------------
T ss_pred EEeCCCCCcccccccccceEEecCCCeEEEEecccccccCCCCC-CEEEEEECCEECCCccc------------------
Confidence 7654444443222 2334789999999998 66676 89999999988764321
Q ss_pred EEeCCceeEeccceEEEEEeecCCccceeEEEee-ccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeE
Q psy14542 162 HIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGV-NKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESV 240 (371)
Q Consensus 162 ~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~-~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~ 240 (371)
++ ...+..|.|.+++.+| .|.|+|.+. +. .|..........+.+.......+|.+...+.....+..|+.+
T Consensus 156 -----~~-~~~~~~L~i~~v~~~d-~G~Y~C~a~~n~-~g~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~v 227 (315)
T 1itb_B 156 -----HF-SGVKDRLIVMNVAEKH-RGNYTCHASYTY-LGKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQI 227 (315)
T ss_dssp -----SE-EEETTEEEESSCCGGG-CEEEEEEEEEEE-TTEEEEEEEEEEEEEECCCCCCCCEECSCCSEEEECCSSSCE
T ss_pred -----eE-eecCceEEEEeceehh-CcEEEEEEEcCC-CCcEEEEEEEEEEEEecCCCCCCCEEecCCCCcEEEeCCCcE
Confidence 11 1223689999999999 999999999 55 565422111113433322223566666555433238999999
Q ss_pred EEEEEeecCCCCceEEEeCCcccccCCceE----------------EecceEEEeccCCCC-CeEEEEEEEcCCCCceeE
Q psy14542 241 ILPCSAQGNPLPTIKWYKQDSPVEESDRIQ----------------RIGSSLSISHVEESD-SGVWNCVANNSEGQDKMQ 303 (371)
Q Consensus 241 ~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~----------------~~~~~l~i~~~~~~d-~G~Y~C~a~n~~g~~~~~ 303 (371)
.|.|.+.|.|.|.+.|+++|..+....... ...+.|.|.++..+| +|.|+|.|.|..|....+
T Consensus 228 ~l~C~~~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~ 307 (315)
T 1itb_B 228 QLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAY 307 (315)
T ss_dssp EEEEEEEECTTSEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGGGTSCEEEEEECTTCCEEEE
T ss_pred EEEEEEecCCCCeeEEEECCEECCcccccccccceeeeccCCCceeEEEEEEEEeecCHHHcCCceEEEEecCCCceeEE
Confidence 999999999999999999999887654321 122489999999999 999999999999999999
Q ss_pred EEEEEec
Q psy14542 304 LFIQYAH 310 (371)
Q Consensus 304 ~~l~v~~ 310 (371)
+.|.|..
T Consensus 308 ~~l~v~~ 314 (315)
T 1itb_B 308 IQLIYPV 314 (315)
T ss_dssp EEEECCC
T ss_pred EEEEecC
Confidence 9988754
No 39
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}
Probab=100.00 E-value=2.5e-33 Score=238.37 Aligned_cols=259 Identities=16% Similarity=0.231 Sum_probs=188.7
Q ss_pred EEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC---------CeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEEEE
Q psy14542 21 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN---------SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQV 91 (371)
Q Consensus 21 ~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~---------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l 91 (371)
+.+.+|+.+.|.|....+.|.+.+.|+|++..+... ...+|.|.+++.+|+|.|+|.+.+..|... ...|
T Consensus 11 ~~v~eg~~v~l~~~~~~~~p~~~v~W~k~~~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~~~n~~g~~~-s~~l 89 (312)
T 2y23_A 11 VNVDDDGVISLNFECDKMTPKSEFSWSKDYVSTEDSPRLEVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIAS-SYLI 89 (312)
T ss_dssp EEECTTCCEEEEEECSSCCTTCCEEEEETTEECTTCTTEEEEEETTEEEEEESSCCGGGCEEEEEEESSSCCCCE-EEEE
T ss_pred EEEecCCeEEEEEEEeCCCCCcEEEEEECCEECCCCCCEEEEEeCCEEEEEECcCCccCCEEEEEEEEeCCCcEE-EEEE
Confidence 678899999999977767888999999999887633 346899999999999999999998877544 5555
Q ss_pred EEecc-----------eeeEecCC--ceeeecCCcEEEEEEec-CCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCe
Q psy14542 92 ILGGE-----------LVEIASSN--QVVVDVGHRIELHCRVS-PKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAG 157 (371)
Q Consensus 92 ~v~~~-----------~~~~~~~~--~~~~~~g~~v~l~C~~~-~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g 157 (371)
.|... +|.+...+ ...+.+|+.+.|.|.+. +.+. +.+.|++++..+.....+.+.....
T Consensus 90 ~v~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~-~~v~W~~~~~~i~~~~~~~~~~~~~------ 162 (312)
T 2y23_A 90 DEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEKLSGN-AKVNYIFNEKEIFEGPKYKMHIDRN------ 162 (312)
T ss_dssp CHHHHHHHHHHHHHHHSCBCCEEEEEEEEECSSSCEEEEEEESCCCSS-CEEEEEETTEEECSSSSCEEEEETT------
T ss_pred EEeeeeeeecccccCCCCccccccCCceEEeeCCCEEEEEEEEeCCCC-CEEEEEECCEECeeCCcEEEEEccC------
Confidence 55410 33332222 33448999999999998 6666 9999999999887654322211100
Q ss_pred eEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecc----------------hhccc
Q psy14542 158 MYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTEN----------------KRLLS 221 (371)
Q Consensus 158 ~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~----------------~~~~~ 221 (371)
. ....|.|.+++.+| .|.|+|.+.+. ...... .+.+... ....+
T Consensus 163 --------~-----~~~~L~i~~~~~~d-~G~Y~C~~~~~-~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (312)
T 2y23_A 163 --------T-----GIIEMFMEKLQDED-EGTYTFQLQDG-KATNHS-----TVVLVGDVFKKLQKEAEFQRQEWIRKQG 222 (312)
T ss_dssp --------T-----TEEEEEESCCCGGG-CEEEEEEEESS-SCEEEE-----EEEECTHHHHHHHHHHHHHHHHHHHHHS
T ss_pred --------C-----CEEEEEEccCCccc-CEeEEEEEEeC-CceEEE-----EEEEcchhhhhhcccccccccchhhccC
Confidence 0 01359999999999 99999999765 332222 2222100 00123
Q ss_pred cceeeeeeeeeeeecCCeEEEEEEeecCCCC-ceEEEeCCcccccCCceEEec--ceEEEeccCCCCCeEEEEEEEcCCC
Q psy14542 222 AAKMFEKHRILNVKKDESVILPCSAQGNPLP-TIKWYKQDSPVEESDRIQRIG--SSLSISHVEESDSGVWNCVANNSEG 298 (371)
Q Consensus 222 p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~v~W~~~~~~~~~~~~~~~~~--~~l~i~~~~~~d~G~Y~C~a~n~~g 298 (371)
|.+..... .. +..|+.+.|.|.+.+.|.+ .+.|++++..+..+.++...+ ..|.|.++..+|+|.|+|.|.|..|
T Consensus 223 p~~~~~~~-~~-v~~G~~~~l~C~~~~~p~~~~v~W~~~g~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~G 300 (312)
T 2y23_A 223 PHFVEYLS-WE-VTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRG 300 (312)
T ss_dssp SEEEEEEE-EE-EETTTEEEEEEEEESCCSSCEEEEEETTEEEEEECCC----CEEEEEECSCSGGGCEEEEEEEESTTC
T ss_pred Cceeecce-EE-EeCCCEEEEEEEEcCCCCCCEEEEeeCCEECCCCCcEEEECCEEEEEECcCCHHHCEEEEEEEEcCCC
Confidence 44443332 44 8999999999999999988 999999999887665555333 5899999999999999999999999
Q ss_pred CceeEEEEEEe
Q psy14542 299 QDKMQLFIQYA 309 (371)
Q Consensus 299 ~~~~~~~l~v~ 309 (371)
....++.|.+.
T Consensus 301 ~~~~~~~l~i~ 311 (312)
T 2y23_A 301 KDKSRLKLVDE 311 (312)
T ss_dssp CEEEEEEECSC
T ss_pred ceeeeeEEEec
Confidence 99999888764
No 40
>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}
Probab=100.00 E-value=8e-35 Score=247.14 Aligned_cols=263 Identities=16% Similarity=0.166 Sum_probs=186.5
Q ss_pred EEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEee---------------C------------CeeEEEEccCCcCCCeE
Q psy14542 21 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRR---------------N------------SDEVLVLDRVQREDAGM 73 (371)
Q Consensus 21 ~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~---------------~------------~~~~l~i~~~~~~d~G~ 73 (371)
+.+.+|++++|.|.+..+.+...+.|+|++..... . .+.+|.|.+++.+|+|.
T Consensus 9 vtv~~G~~v~L~C~v~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~G~ 88 (308)
T 4fom_A 9 VTAVWGKNVSLKCLIEVNETITQISWEKIHGKSSQTVAVHHPQYGFSVQGEYQGRVLFKNYSLNDATITLHNIGFSDSGK 88 (308)
T ss_dssp CEEETTSCEEECCBCCCSSCEEEEEEEEESSSCEEEEEEECSSSCEEECTTTTTTEEESCCSSSBCCEEECSCCGGGCEE
T ss_pred eEEEcCCcEEEEEEecCCCCCcEEEEEECCCCCCceEEEecCCCCceecCcccceEEeeccCCCceEEEEccCCHHHCEE
Confidence 68899999999997665666667999985321100 0 34679999999999999
Q ss_pred EEEEEEcCC-CCeEEEEEEEEecceee-EecCCceee-ecCCcEEEEEEec-CCCCCceEEEeeCCEEeeeCCeeEEEEc
Q psy14542 74 YQCHVSADD-DSAQMSAQVILGGELVE-IASSNQVVV-DVGHRIELHCRVS-PKRLSSAKAWLKDGLVLRRNSDEVLVLD 149 (371)
Q Consensus 74 Y~C~~~~~~-~~~~~~~~l~v~~~~~~-~~~~~~~~~-~~g~~v~l~C~~~-~~~~~~~v~W~~~~~~~~~~~~~~~~~~ 149 (371)
|+|.+.+.. +.....+.+.+...+.. ....+...+ ..|+.+.|.|.+. +.|. +.++|++++..+.......
T Consensus 89 Y~C~a~n~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~C~~~~g~P~-~~i~W~~~~~~~~~~~~~~---- 163 (308)
T 4fom_A 89 YICKAVTFPLGNAQSSTTVTVLVEPTVSLIKGPDSLIDGGNETVAAICIAATGKPV-AHIDWEGDLGEMESTTTSF---- 163 (308)
T ss_dssp EEEEEEETTTEEEEEEEEEEEEBCCEEEEEECSSCCCTTCSCEEEEEEEEEEEBSC-CEEEECCCSSBCCEEEEEC----
T ss_pred EEEEEeeCCCcceeeeeEEEeeeccccccccccceeEEcCCceEEEEEEecCCcCC-ceEEEEECCccccccccee----
Confidence 999998753 44456666666532222 222333333 6789999999874 5565 8999999987765432100
Q ss_pred ccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeee
Q psy14542 150 RVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKH 229 (371)
Q Consensus 150 ~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~ 229 (371)
. ++.. ...+.|.|..+...| .|.|+|.+.|. .+....+. ...|.|. .+|.+...+.
T Consensus 164 -----~---------~~~~--~~~s~l~i~~~~~~d-~g~Y~C~a~n~-~~~~~~~~-~~~l~V~-----~~P~~~~~~~ 219 (308)
T 4fom_A 164 -----P---------NETA--TIISQYKLFPTRFAR-GRRITCVVKHP-ALEKDIRY-SFILDIQ-----YAPEVSVTGY 219 (308)
T ss_dssp -----T---------TSCE--EEEEEEEECCCGGGT-TCEEEEEEECT-TCSSCEEE-EEECCCC-----EEEEECCBCC
T ss_pred -----e---------eecc--cccccceEEeeeecC-CccEEEEEEcc-CCCCceEE-eEEEEEe-----cCCeeEEccc
Confidence 0 1111 112578999999999 99999999987 44333222 1155565 5666655544
Q ss_pred eeeeeecCCeEEEEEEeecCCCC-ceEEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEE
Q psy14542 230 RILNVKKDESVILPCSAQGNPLP-TIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQY 308 (371)
Q Consensus 230 ~~~~~~~g~~~~l~C~~~~~p~~-~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 308 (371)
....+..|+.+.|.|.+.|.|.| .+.|++++..+..... ...+..|.|.++..+|+|.|+|.|.|..|..+.++.|.|
T Consensus 220 ~~~~~~~g~~v~l~C~~~g~P~p~~v~W~k~~~~~~~~~~-~~~~~~l~i~~v~~~d~G~Y~C~A~N~~G~~~~~~~l~V 298 (308)
T 4fom_A 220 DGNWFVGRKGVNLKCNADANPPPFKSVWSRLDGQWPDGLL-ASDNTLHFVHPLTFNYSGVYICKVTNSLGQRSDQKVIYI 298 (308)
T ss_dssp CSCEETTCCSCEEECCEEEESCEEEEECCBSSSCCCSSCB-CSTTEEECCSCCCSCCCSEEEEEEEETTEEEEEEEECCE
T ss_pred ceeeeeccccEEEEEEEecCCCCcEEEEEECCeECCCcEE-EcCCeEEEECCCChhhCEEEEEEEEeCCCcEEEEEEEEE
Confidence 44337788999999999999988 6999999988765432 223345667899999999999999999999999999999
Q ss_pred ecCcc
Q psy14542 309 AHGKY 313 (371)
Q Consensus 309 ~~~p~ 313 (371)
.++|.
T Consensus 299 ~~~P~ 303 (308)
T 4fom_A 299 SDPPH 303 (308)
T ss_dssp ECCC-
T ss_pred EcCCC
Confidence 99987
No 41
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}
Probab=100.00 E-value=2.7e-33 Score=239.79 Aligned_cols=259 Identities=15% Similarity=0.182 Sum_probs=186.9
Q ss_pred EEEeccCcEEEEEEecCC--------CCCCeeEEEeCCEEEeeC----CeeEEEEccCCcCCCe-EEEEEEEcCCCCeEE
Q psy14542 21 VVVDVGHRIELHCRVSPK--------RLSSAKAWLKDGLVLRRN----SDEVLVLDRVQREDAG-MYQCHVSADDDSAQM 87 (371)
Q Consensus 21 ~~~~~G~~v~l~C~~~~~--------~~~~~~~W~~~~~~~~~~----~~~~l~i~~~~~~d~G-~Y~C~~~~~~~~~~~ 87 (371)
+.+.+|+++.|.|.+... .|.+.+.|+|++..+... ...+|.|.+++.+|+| .|+|.+.+..|....
T Consensus 39 v~v~eG~~v~L~C~~~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~L~i~~v~~~D~Gs~Y~C~a~n~~g~~~~ 118 (329)
T 3oq3_B 39 DMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRRVKNGDLWIANYTSNDSHRRYLCTVTTKNGDCVQ 118 (329)
T ss_dssp EEECTTSCEEECCHHHHCTTTGGGSCCTTCEEEEEECSSSCEECSTTEETTEEEESSCCGGGGGCCEEEEEECTTSCEEE
T ss_pred EEEECCCeEEEEccCCCCccccccccCCCCeeEEEECCCCccccCceeecceEEEcCCChHhCCCcEEEEEEeCCCceee
Confidence 679999999999965542 366789999998755432 4678999999999999 999999998876544
Q ss_pred EEEEEEecceeeEecCCce-eeecCCcEEEEEEecCCC-CCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeC
Q psy14542 88 SAQVILGGELVEIASSNQV-VVDVGHRIELHCRVSPKR-LSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIED 165 (371)
Q Consensus 88 ~~~l~v~~~~~~~~~~~~~-~~~~g~~v~l~C~~~~~~-~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~ 165 (371)
...+.+...++.+...... .+.+|+.+.|.|.+.+.| . +.+.|++++..+....
T Consensus 119 ~~~~~v~~~~p~~~~~~~~~~~~~G~~v~L~C~~~g~p~~-~~i~W~k~~~~l~~~~----------------------- 174 (329)
T 3oq3_B 119 GIVRSHIRKPPSCIPETYELGTHDKYGIDLYCGILYAKHY-NNITWYKNNQELIIDG----------------------- 174 (329)
T ss_dssp EEEEEEECCCCSCEEEEEETTSSTTTCEEEECCCCSCCCC-CEEEEEETTEECCCSS-----------------------
T ss_pred EEEEEEEcCCCcEeccccceEEeCCCcEEEEeccCCCCCC-ceEEEEECCccCCCCC-----------------------
Confidence 4433444334433222221 226799999999999988 5 8999999999875332
Q ss_pred CceeEeccceEEEEEeecCCccceeEEEeecc--ccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEE
Q psy14542 166 GKYHMLSSGELIIHQVDESDRYRSYQCRGVNK--LTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILP 243 (371)
Q Consensus 166 ~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~--~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~ 243 (371)
.++... +..|.|.+++.+| .|.|+|.+.|. ..+..........|.|...+....|.+ .+.... +..|+.+.|.
T Consensus 175 ~~~~~~-~~~L~I~~v~~~D-~G~Y~C~a~n~~~~g~~~~~~s~~~~l~V~~~~~~~~~~~--~~~~~~-v~~G~~~~l~ 249 (329)
T 3oq3_B 175 TKYSQS-GQNLIIHNPELED-SGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLI--LDPKIN-VTIGEPANIT 249 (329)
T ss_dssp SSEEEE-TTEEEECSCCGGG-CEEEEEEEEECCTTSSSCEEEEEEEEEEEECCCCCCEEEE--CCSEEE-ECTTSCEEEE
T ss_pred ceEecC-CCEEEEeecChhh-CEEEEEEEEecccCCCceeEEEeeEEEEEECCCCCCCcee--cCCeeE-EecCCCEEEE
Confidence 122222 3789999999999 99999999974 233222211112566663221111222 344445 8999999999
Q ss_pred EEeecCC---CC-ceEEEeCCccc-ccCCceEE--------ecceEEEeccCCCCCe-EEEEEEEcCCCCceeEEEEEE
Q psy14542 244 CSAQGNP---LP-TIKWYKQDSPV-EESDRIQR--------IGSSLSISHVEESDSG-VWNCVANNSEGQDKMQLFIQY 308 (371)
Q Consensus 244 C~~~~~p---~~-~v~W~~~~~~~-~~~~~~~~--------~~~~l~i~~~~~~d~G-~Y~C~a~n~~g~~~~~~~l~v 308 (371)
|.+.+.| .+ .+.|++++..+ ..+.+... ..+.|.|.++..+|+| .|+|.|.|..|....++.|.|
T Consensus 250 C~~~g~p~~~~~i~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~~Y~C~a~N~~G~~~~~~~l~v 328 (329)
T 3oq3_B 250 CTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDKTLTTTVVL 328 (329)
T ss_dssp EEEEETTCCTTCCEEEEECTTSCBCCBCSSEEEEEEEETTEEEEEEEESSCCGGGTTCEEEEEEECSSCEEEEEEEEEE
T ss_pred EEEEECCCCCCCcEEEEEECCeeeeccCCceeeeecccCceeEeEEEEEeccHHHCCCcEEEEEEecCCceEEEEEEEe
Confidence 9999988 67 88999999874 33333221 3568999999999999 999999999999988888876
No 42
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Probab=100.00 E-value=2.6e-33 Score=245.68 Aligned_cols=268 Identities=19% Similarity=0.281 Sum_probs=197.8
Q ss_pred eeEEecccceEEEeCCCcEEEeccCcEEEEEEecCCCC--CCeeEEEeCCEEEeeC-----------CeeEEEEccCCcC
Q psy14542 3 LFIQVKSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRL--SSAKAWLKDGLVLRRN-----------SDEVLVLDRVQRE 69 (371)
Q Consensus 3 ~~~~v~~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~--~~~~~W~~~~~~~~~~-----------~~~~l~i~~~~~~ 69 (371)
+.|.+..++.+...+.. ..+.+|+.++|.|.+....+ .+.+.|++++..+... .+++|.|.+++.+
T Consensus 96 ~~v~v~~~p~~~~~~~~-~~v~~G~~v~l~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~ 174 (388)
T 2v5m_A 96 VHVRAVVAQYYEADVNK-EHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPE 174 (388)
T ss_dssp EEEEEECCCCCCCBCCC-EEEETTSCEEECCBCCTTTTTTEEEEEEEETTCCEECSSSCBTTTEEECTTSCEEESSCCGG
T ss_pred eEEEEccccccccCccc-eeeecCCcEEEEEECcCCCCCCcceEEEEeCCCcccccccCCCCcEEEccCCcEEEecCCcc
Confidence 34455455555555666 78999999999996544332 3789999988765321 3568999999999
Q ss_pred CC-eEEEEEEEcCCCCeEE-E---EEEEEecc----eeeEe--cCCceeeecCCcEEEEEEecCCCCCceEEEeeCCEEe
Q psy14542 70 DA-GMYQCHVSADDDSAQM-S---AQVILGGE----LVEIA--SSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVL 138 (371)
Q Consensus 70 d~-G~Y~C~~~~~~~~~~~-~---~~l~v~~~----~~~~~--~~~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~ 138 (371)
|+ |.|+|.+.+..+.... . ..|.|... .|.+. ......+.+|+.++|.|.+.+.|. +.+.|++++..+
T Consensus 175 d~~G~Y~C~~~n~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~v~~G~~v~l~C~~~g~p~-p~v~W~~~~~~~ 253 (388)
T 2v5m_A 175 DGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQGFPA-PSFRWYKFIEGT 253 (388)
T ss_dssp GGGCCEEEEEEETTTCCEEECSSCBCEEEECCCSCEEEECCSSCCCCEEEETTSCEEECCCCEEESC-CEEEEEEECTTS
T ss_pred ccCeeEEEEeccCCCCceeeccccceEEEecCCcCCCCcCccccCCceEEeeCCcEEEEEECCCCCC-CEEEEEecCCCC
Confidence 99 9999999987543321 1 24555421 12211 112334578999999999988877 899999975322
Q ss_pred eeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchh
Q psy14542 139 RRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKR 218 (371)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~ 218 (371)
..... + . . +.+.. ..+..|.|.++..+| .|.|+|.+.|. .|...... .|.|.
T Consensus 254 ~~~~~--~-----~--~---------~~~~~-~~~~~L~i~~v~~~d-~G~Y~C~a~n~-~g~~~~~~---~l~V~---- 305 (388)
T 2v5m_A 254 TRKQA--V-----V--L---------NDRVK-QVSGTLIIKDAVVED-SGKYLCVVNNS-VGGESVET---VLTVT---- 305 (388)
T ss_dssp SCEEE--C-----C--C---------SSSEE-EETTEEEESSCCGGG-CEEEEEEEECS-SCEEEEEE---EEEEE----
T ss_pred ccccc--c-----c--c---------cCcee-cccCEEEECcCCHHH-CeEEEEEEecC-CCceeEEE---EEEEe----
Confidence 11000 0 0 0 01111 223689999999999 99999999998 77766666 78887
Q ss_pred ccccceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCC
Q psy14542 219 LLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEG 298 (371)
Q Consensus 219 ~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g 298 (371)
.+|.+...+.... +..|+.+.|.|.+.|.|.+.+.|+++|..+..+ ++.|.|.++..+|+|.|+|.|.|..|
T Consensus 306 -~~p~~~~~~~~~~-v~~g~~~~l~C~~~g~p~p~i~W~~~g~~i~~~------~~~L~i~~v~~~d~G~Y~C~a~N~~G 377 (388)
T 2v5m_A 306 -APLSAKIDPPTQT-VDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHS------ESVLRIESVKKEDKGMYQCFVRNDRE 377 (388)
T ss_dssp -EEEEEEEESSEEE-ECTTSCEEEEEEEEEECCCEEEEEETTEECSCC------SSEEEESSCCGGGCEEEEEEEECSSC
T ss_pred -CCCccccCCCcEE-ecCCCCEEEEEEeccccCCeEEEEECCEECccC------CCEEEEecCChhhCEEEEEEEEcCCC
Confidence 6666666666666 899999999999999999999999999887654 46899999999999999999999999
Q ss_pred CceeEEEEEE
Q psy14542 299 QDKMQLFIQY 308 (371)
Q Consensus 299 ~~~~~~~l~v 308 (371)
....++.|.|
T Consensus 378 ~~~~~~~l~V 387 (388)
T 2v5m_A 378 SAEASAELKL 387 (388)
T ss_dssp EEEEEEEEEE
T ss_pred cEEEEEEEEe
Confidence 9999988876
No 43
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4
Probab=100.00 E-value=3.8e-33 Score=245.21 Aligned_cols=255 Identities=20% Similarity=0.338 Sum_probs=196.3
Q ss_pred EEEeccCcEEEEEEecCCCCCCeeEEEeCC---EE----------EeeCCeeEEEEccCCcCCCe---EEEEEEEcCCCC
Q psy14542 21 VVVDVGHRIELHCRVSPKRLSSAKAWLKDG---LV----------LRRNSDEVLVLDRVQREDAG---MYQCHVSADDDS 84 (371)
Q Consensus 21 ~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~---~~----------~~~~~~~~l~i~~~~~~d~G---~Y~C~~~~~~~~ 84 (371)
..+.+|+.+.|.|.+..+.|.+.+.|++++ .. .....+++|.|.+++.+|+| .|+|.+.+..+.
T Consensus 110 ~~~~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~~~~Y~C~a~n~~~~ 189 (395)
T 1bih_A 110 KTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVD 189 (395)
T ss_dssp ECCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTTEEECTTSCEEEEEECGGGCCSSEEEEEEEECTTCS
T ss_pred eeeeeCCcEEEEecCCCCCCCCeEEEEecCCCcCcccccccccccEEEcCCCcEEEEEEeeccCCCceEEEEEEEecccc
Confidence 568899999999965567888999999975 11 11114567999999999999 999999998877
Q ss_pred eEEEEEEEEec------------ceeeEecCCceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccC
Q psy14542 85 AQMSAQVILGG------------ELVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQ 152 (371)
Q Consensus 85 ~~~~~~l~v~~------------~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~ 152 (371)
........... ..|.+ ......+.+|+.+.|.|.+.+.+. +.+.|++++..+.......+...
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~~G~~v~l~C~~~g~p~-~~i~W~~~g~~~~~~~~~~~~~~--- 264 (395)
T 1bih_A 190 EEVVLVEYEIKGVTKDNSGYKGEPVPQY-VSKDMMAKAGDVTMIYCMYGSNPM-GYPNYFKNGKDVNGNPEDRITRH--- 264 (395)
T ss_dssp SCEEEEEEEECCCBCCSSCCCCCCEEEE-ECCSEEEETTSCEEEEEEEECSSC-CCCEEEETTEECCCCTTSSEESC---
T ss_pred eEEEeeeEEecccccccccccCCcCcee-cCCceEEECCCcEEEEEEeccCCC-CeEEEEECCEEcCCCCceeEEEE---
Confidence 54433322210 12333 233445589999999999998887 88999999988765421111000
Q ss_pred cCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeee-eeccceeeeecchhccccceeeeeee-
Q psy14542 153 REDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLL-SVNRGRLSLTENKRLLSAAKMFEKHR- 230 (371)
Q Consensus 153 ~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~-~~~~~~l~v~~~~~~~~p~~~~~~~~- 230 (371)
.......|.|.++..+| .|.|+|.+.|. .|.... .. .|.|. .+|.+...+..
T Consensus 265 ----------------~~~~~~~L~i~~~~~~d-~G~Y~C~a~n~-~g~~~~~~~---~l~V~-----~~P~~~~~~~~~ 318 (395)
T 1bih_A 265 ----------------NRTSGKRLLFKTTLPED-EGVYTCEVDNG-VGKPQKHSL---KLTVV-----SAPKYEQKPEKV 318 (395)
T ss_dssp ----------------SSSTTSEEEESSCCGGG-CEEEEEEECCS-SSSCEEEEE---EEEEE-----EEEEEEECCCSE
T ss_pred ----------------ecCCCceEEEccCChhh-CEEEEEEEEeC-CCCceEEEE---EEEEE-----cCCccccCCCcc
Confidence 00011379999999999 99999999998 665433 55 78888 67777776665
Q ss_pred eeeeecCCeEEEEEEeecCCCCceEEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEE
Q psy14542 231 ILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQY 308 (371)
Q Consensus 231 ~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 308 (371)
.. +..|+.+.|.|.+.|.|.+.+.|+++|..+..+ ++...++.|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus 319 ~~-~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~-~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V 394 (395)
T 1bih_A 319 IV-VKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGG-RATVTDSGLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQV 394 (395)
T ss_dssp EE-ECTTSCEEEECEEEEESCCCCEEEETTEECCSS-SEEEETTEEEESSCCSTTCEEEEEEEEETTEEEEEEEEEEE
T ss_pred eE-ecCCCeEEEEEEECcccCCeeEEEECCEECCCC-ceEEECCEEEEeeCCcccCEEEEEEEEccCCCceEEEEEEE
Confidence 44 899999999999999999999999999988765 67777789999999999999999999999999999988877
No 44
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4
Probab=100.00 E-value=2.8e-32 Score=243.75 Aligned_cols=288 Identities=16% Similarity=0.206 Sum_probs=204.6
Q ss_pred eEEecccceEE-EeCCCcEEEeccCcEEEEEEecCCCCCC---eeEEEeCCEEEeeC------CeeEEEEccCCcCCCeE
Q psy14542 4 FIQVKSSLSIE-MSPSGQVVVDVGHRIELHCRVSPKRLSS---AKAWLKDGLVLRRN------SDEVLVLDRVQREDAGM 73 (371)
Q Consensus 4 ~~~v~~~~~~~-~~p~~~~~~~~G~~v~l~C~~~~~~~~~---~~~W~~~~~~~~~~------~~~~l~i~~~~~~d~G~ 73 (371)
.|.|..+|.+. ..|.. ..+.+|+.+.|.|.+.. .+.+ .+.|+|++..+... ....|.|.+++.+|+|.
T Consensus 79 ~l~V~~~P~~~~~~~~~-~~v~~G~~v~L~C~~~g-~~~~~~~~v~W~k~g~~l~~~~~~~~~~~~~L~i~~~~~~d~G~ 156 (450)
T 1z7z_I 79 FLTVYWTPERVELAPLP-SWQPVGKNLTLRCQVEG-GAPRANLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGAN 156 (450)
T ss_dssp EEEEEBCCSEEEECCCC-SEECTTSEEEEEEEEEC-CBCGGGEEEEEEETTEEEEEEECCTTTEEEEEEEECCSSCSSCE
T ss_pred EEEEEeCCCcceecCCC-ceEeeCCeEEEEEEecC-CCCCcCcEEEEeeCCEEeecccccccccceEEEEEeeccccCce
Confidence 34444444444 55565 78999999999996654 4444 89999999988654 35689999999999999
Q ss_pred EEEEEEcCCCCeE--------EEEEEEEecc---eeeEecCCceeeecCCcEEEEEEecCC-CC-CceEEEeeCCEEeee
Q psy14542 74 YQCHVSADDDSAQ--------MSAQVILGGE---LVEIASSNQVVVDVGHRIELHCRVSPK-RL-SSAKAWLKDGLVLRR 140 (371)
Q Consensus 74 Y~C~~~~~~~~~~--------~~~~l~v~~~---~~~~~~~~~~~~~~g~~v~l~C~~~~~-~~-~~~v~W~~~~~~~~~ 140 (371)
|+|.+.|..+... ....|.|... +|.+... ..+.+|+.+.|.|.+.+. |. .+.+.|++++..+..
T Consensus 157 Y~C~a~n~~g~~~~~~~~~~s~~~~l~v~~~~~~~p~~~~~--~~v~~G~~v~l~C~~~g~~P~~~~~~~W~~~~~~~~~ 234 (450)
T 1z7z_I 157 FSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSP--RVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNP 234 (450)
T ss_dssp EEEEEEEECGGGTSCEEEEECCCEECEECCCCSSCCEEECC--SEEETTSEEEEEEEEESCTTGGGCEEEEEETTEECCC
T ss_pred EEEEEEcccCCCCceEEeeccCccceeeeccCCCCCEecCc--eeEEeCCcEEEEEEeeCCCCCCceEEEEeCCCEeCCc
Confidence 9999998765322 2234444421 1222211 345899999999999988 41 389999999877654
Q ss_pred C-----CeeEEE-EcccCcCCCe--eEEEEEeCCceeEe-----------------------------------------
Q psy14542 141 N-----SDEVLV-LDRVQREDAG--MYQCHIEDGKYHML----------------------------------------- 171 (371)
Q Consensus 141 ~-----~~~~~~-~~~~~~~~~g--~y~~~~~~~~~~~~----------------------------------------- 171 (371)
. ...... .-++..+|.| .|+|.+.+......
T Consensus 235 ~~~~~~~~~~~~~~~~v~~~d~G~~~Y~C~a~n~~g~~~~~~~l~V~~~~~p~i~~~~~~v~~G~~v~l~C~~~p~p~i~ 314 (450)
T 1z7z_I 235 TVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEVSEGTEVTVKCEAHPRAKVT 314 (450)
T ss_dssp EEEEETTEEEEEEEEECCGGGCEEEEEEEEEEETTEEEEEEEEEEEECCCCCEEEESCSEEETTCEEEEEEEC-------
T ss_pred eEEecCCceeEEEEEEeEhhhCCcEEEEEEEccCCccEEEEEEEEEecCCCCeEecCCeeEeCCCcEEEEEecCCCCEeE
Confidence 1 111111 1256889999 99998876522110
Q ss_pred ----------ccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeee--eeeeeeecCCe
Q psy14542 172 ----------SSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEK--HRILNVKKDES 239 (371)
Q Consensus 172 ----------~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~--~~~~~~~~g~~ 239 (371)
....|.|.++..+| .|.|+|.+.|...|..........|.|. .+|.+.... .... +.+|+.
T Consensus 315 W~g~~~~~~~~~~~L~i~~~~~~d-~G~Y~C~a~n~~~g~~~~~~~~~~l~V~-----~~P~~~~~~~p~~~~-~~~g~~ 387 (450)
T 1z7z_I 315 LNGVPAQPLGPRAQLLLKATPEDN-GRSFSCSATLEVAGQLIHKNQTRELRVL-----YGPRLDERDCPGNWT-WPENSQ 387 (450)
T ss_dssp ---------CCCCCEEEECCGGGT-TCEEEEEEEEEETTEEEEEEEEEECEEE-----EEEECCSTTSCSEEE-EETTCE
T ss_pred ECCEEcCCCCceEEEEEecCcccC-CceEEEEEEcCCCCcccccceeEEEEEe-----cCCceeeccCCCcee-EcCCCe
Confidence 11248889999999 9999999997634443311112267776 566665543 3445 899999
Q ss_pred EEEEEEeecCCCCceEEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEecC
Q psy14542 240 VILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHG 311 (371)
Q Consensus 240 ~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~ 311 (371)
+.|.|.+.|.|.|.+.|++++..+...+ ..+ .+..+|+|.|+|.|.|..|.....+.|.|.++
T Consensus 388 ~~l~C~~~g~P~p~i~W~~~g~~~~~~g------~~~---~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~ 450 (450)
T 1z7z_I 388 QTPMCQAWGNPLPELKCLKDGTFPLPIG------ESV---TVTRDLEGTYLCRARSTQGEVTREVTVNVLSP 450 (450)
T ss_dssp ECCCCCCEEESCCEEEEEETTTEECCTT------SCE---ECCGGGCEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred EEEEEecccCCCCcEEEEECCcccCCCC------CeE---eEehhhCeEEEEEEEeCCCceeEEEEEEEEcC
Confidence 9999999999999999999998443332 223 57889999999999999999999999998754
No 45
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A
Probab=100.00 E-value=1.5e-32 Score=235.53 Aligned_cols=271 Identities=16% Similarity=0.213 Sum_probs=190.4
Q ss_pred cceEEEeCCCcEEEeccCcEEEEEEecCCC---CCCeeEEEeCC--EE-------------Ee------------eCCee
Q psy14542 10 SLSIEMSPSGQVVVDVGHRIELHCRVSPKR---LSSAKAWLKDG--LV-------------LR------------RNSDE 59 (371)
Q Consensus 10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~---~~~~~~W~~~~--~~-------------~~------------~~~~~ 59 (371)
++.+.+..+..+.+.+|++++|.|.+.... +...+.|++++ .. +. .....
T Consensus 13 ~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 92 (331)
T 3u83_A 13 DPSQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVEFLRPSFTDG 92 (331)
T ss_dssp --------CEEEEEETTCCEEECCBCSSCCSSCEEEEEEEEEEETTEEEEEEEEETTTEEEECTTCTTTEEESSCSSSBC
T ss_pred CCcceEEcCCcEEEEecCCEEEeeecCCCCCCCceEEEEEEEcCCCCCceEEEEeccCCCCcCcccCCceEecccCCCCc
Confidence 444455555558999999999999654331 44579999943 11 10 00356
Q ss_pred EEEEccCCcCCCeEEEEEE-EcCCCCeEEEEEEEEecceeeEe---cCCceeeecC---CcEEEEEE-ecCCCCCceEEE
Q psy14542 60 VLVLDRVQREDAGMYQCHV-SADDDSAQMSAQVILGGELVEIA---SSNQVVVDVG---HRIELHCR-VSPKRLSSAKAW 131 (371)
Q Consensus 60 ~l~i~~~~~~d~G~Y~C~~-~~~~~~~~~~~~l~v~~~~~~~~---~~~~~~~~~g---~~v~l~C~-~~~~~~~~~v~W 131 (371)
+|.|.+++.+|+|.|+|.+ .+..+.....+.|.|.. +|.+. ......+.+| +.++|.|. +.+.|. +.+.|
T Consensus 93 ~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~-~p~~~~~~~~~~~~~~~g~~~~~~~l~C~~~~~~p~-~~i~W 170 (331)
T 3u83_A 93 TIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMA-KPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPP-SVVSW 170 (331)
T ss_dssp CEEECSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEB-CCEEEEEECSSCEEECTTCCCCEEEEEEEEEEEBSC-CEEEE
T ss_pred eEEEcccCcccCcEEEEEEEecCCCccEEEEEEEEec-CCcceeecCCCceeecCCCccceEEEEEEecCCcCC-ceEEE
Confidence 7999999999999999985 45556667788888884 44332 2333445777 77999998 667676 89999
Q ss_pred eeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeeecccee
Q psy14542 132 LKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRL 211 (371)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l 211 (371)
++++........ . ... ++.+.+ ...|.|..+..+| .|.|+|.+.|. .+...... .|
T Consensus 171 ~~~~~~~~~~~~----~----~~~---------~~~~~~--~~~L~i~~~~~~d-~G~Y~C~a~n~-~~~~~~~~---~l 226 (331)
T 3u83_A 171 ETRLKGEAEYQE----I----RNP---------NGTVTV--ISRYRLVPSREAH-QQSLACIVNYH-MDRFKESL---TL 226 (331)
T ss_dssp EESSCCEEEEEE----E----ECT---------TSCEEE--EEEEEECCCGGGT-TCEEEEEEEET-TEEEEEEE---EC
T ss_pred EcCCCCccccce----e----ECC---------CCcEEE--EEEEEEEeccccC-CCEEEEEEecC-CCcceeeE---EE
Confidence 996322211100 0 001 112221 2568888889999 99999999998 66666666 77
Q ss_pred eeecchhccccceeeeeeeeeeeecCCeEEEEEEeecCCCCc-eEEEeCCcccccCCceEEecceEEEe-ccCCCCCeEE
Q psy14542 212 SLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPT-IKWYKQDSPVEESDRIQRIGSSLSIS-HVEESDSGVW 289 (371)
Q Consensus 212 ~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~-v~W~~~~~~~~~~~~~~~~~~~l~i~-~~~~~d~G~Y 289 (371)
.|. .+|.+...+.....+..|+.+.|.|.+.+.|.+. +.|++++..+... ....+++|.|. ++..+|+|.|
T Consensus 227 ~V~-----~~P~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~i~W~~~~~~~~~~--~~~~~~~L~i~~~v~~~d~G~Y 299 (331)
T 3u83_A 227 NVQ-----YEPEVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKG--VEAQNRTLFFKGPINYSLAGTY 299 (331)
T ss_dssp CEE-----EEEEEEEECCCSCCBTTCCCEEEEEEEEEESCCCEEEEEETTBSCCTT--EEEETTEEEECSCCCGGGCEEE
T ss_pred EEe-----cCCeEEEecCCCceEeCCCeEEEEEeCcCCCCCCEEEEEECCCccccc--ceecCcEEEEeCCCccccCeEE
Confidence 777 5666664443333388899999999999999998 9999999987654 34467889999 8999999999
Q ss_pred EEEEEcCCCCceeEEEEEEecCcc
Q psy14542 290 NCVANNSEGQDKMQLFIQYAHGKY 313 (371)
Q Consensus 290 ~C~a~n~~g~~~~~~~l~v~~~p~ 313 (371)
+|.|.|..|....++.|.|...+.
T Consensus 300 ~C~a~N~~G~~~~~~~l~V~~~~~ 323 (331)
T 3u83_A 300 ICEATNPIGTRSGQVEVNITEAAA 323 (331)
T ss_dssp EEEEEETTEEEEEEEEECCBC---
T ss_pred EEEEEeccccceEEEEEEEeccch
Confidence 999999999999999999987766
No 46
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}
Probab=100.00 E-value=2.8e-33 Score=235.80 Aligned_cols=268 Identities=18% Similarity=0.261 Sum_probs=191.4
Q ss_pred ccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEE---Eee-CCeeEEEEccCCcCCCeEEEEEEEcCCCC
Q psy14542 9 SSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLV---LRR-NSDEVLVLDRVQREDAGMYQCHVSADDDS 84 (371)
Q Consensus 9 ~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~---~~~-~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 84 (371)
.+|.|...+.. ..+.+|++++|.|.+. + .+.|++++.. +.. ....+|.|.+++.+|+|.|+|.+.+..+.
T Consensus 3 ~~P~i~~~~~~-~~v~~G~~v~L~C~~~-~----~v~W~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~ 76 (292)
T 4dkd_C 3 SIPVIEPSVPE-LVVKPGATVTLRCVGN-G----SVEWDGPPSPHWTLYSDGSSSILSTNNATFQNTGTYRCTEPGDPLG 76 (292)
T ss_dssp -CCEEESCCSS-CEECTTCCEEEEEECS-S----CCCBCCCCCSSCEECCBTTEEEEEESSCCGGGCSCEEECCCC----
T ss_pred CCceecCCCCe-EEEcCCCcEEEEEcCC-C----ceEEccCCCCceEEeccCceEEEEEcccccccCEEEEEEEccCCCC
Confidence 46788888877 8999999999999544 3 2999976432 111 14579999999999999999999988777
Q ss_pred eEEEEEEEEecceeeEe-cCCceeeecCCcEEEEEEecCCCCCceEEEeeCC-EEeeeCCeeEEEEcccCcCCCeeEEEE
Q psy14542 85 AQMSAQVILGGELVEIA-SSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDG-LVLRRNSDEVLVLDRVQREDAGMYQCH 162 (371)
Q Consensus 85 ~~~~~~l~v~~~~~~~~-~~~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~-~~~~~~~~~~~~~~~~~~~~~g~y~~~ 162 (371)
....+.|.|...+..+. ......+.+|+.++|.|.+.+....+.+.|++++ ..+....
T Consensus 77 ~~~~~~l~V~~~~~~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~-------------------- 136 (292)
T 4dkd_C 77 GSAAIHLYVKDPARPWNVLAQEVVVFEDQDALLPCLLTDPVLEAGVSLVRVRGRPLMRHT-------------------- 136 (292)
T ss_dssp CCEEECCEECCSSCCEEESCSEEEEETTSCEECCEEESSGGGGSSEEEEEGGGCCCCSSC--------------------
T ss_pred cceEEEEEEcCccccccccCCeEEEcCCCcEEEeeeCCCCCcceeEEEEecCCCccccCC--------------------
Confidence 78888999984433333 3334445899999999999873322689999974 4333221
Q ss_pred EeCCceeEeccceEEEEEeecCCccceeEEEeecccccee-eeeeccceeeeecchhccccceeeeeeeeeeeecCCeEE
Q psy14542 163 IEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGAS-LLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVI 241 (371)
Q Consensus 163 ~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~-~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~ 241 (371)
++....+..|.|.++...| .|.|+|.+.+. .+.. .... .|.|..... .+|.+...+.... +..|+.+.
T Consensus 137 ----~~~~~~~~~L~i~~~~~~d-~G~Y~C~a~n~-~~~~~s~~~---~l~V~~~~~-~~p~i~~~~~~~~-~~~g~~v~ 205 (292)
T 4dkd_C 137 ----NYSFSPWHGFTIHRAKFIQ-SQDYQCSALMG-GRKVMSISI---RLKVQKVIP-GPPALTLVPAELV-RIRGEAAQ 205 (292)
T ss_dssp ----CEECCSSSCCEETTCCGGG-CSEEEEEECST-TSCEECCCE---EEEEECCCC-SSCEEEEESSCBC-CCSSSCEE
T ss_pred ----cccccCCceEEECCCCHHH-CeEEEEEEEeC-CCceeEEEE---EEEEeCCCC-CCCeEEccCCcee-EecCCCEE
Confidence 2222233569999999999 99999999987 4433 2244 666662111 2677777666665 78999999
Q ss_pred EEEEeecCCC-CceEEEeCCcccccCCceE------EecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEecCcc
Q psy14542 242 LPCSAQGNPL-PTIKWYKQDSPVEESDRIQ------RIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKY 313 (371)
Q Consensus 242 l~C~~~~~p~-~~v~W~~~~~~~~~~~~~~------~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~ 313 (371)
|.|.+.+.|. +.+.|++++..+....... ...+.|.|.++..+|+|.|+|.|.|..|....++.|.|.....
T Consensus 206 l~C~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~~~ 284 (292)
T 4dkd_C 206 IVCSASSVDVNFDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVVESAG 284 (292)
T ss_dssp EEEEEEESSSCCEEECCBSSCCCCCCBEEEEETTEEEEEEEEEESSCCTTSCEEEEEEEECSSCEEEEEEEECC-----
T ss_pred EEEEecCCCCceEEEEeCCCcccccCccceeccceeeeEEEEEECccChhcCeEEEEEEecCCCCceeEEEEEEeeCCC
Confidence 9999998665 5688889888665443222 2335899999999999999999999999999999999887655
No 47
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}
Probab=100.00 E-value=1.1e-32 Score=242.87 Aligned_cols=261 Identities=11% Similarity=0.096 Sum_probs=174.4
Q ss_pred EEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC----CeeEEEEcc-CCcCCCeEEEEEEEcCCCCeEE-EEEEEEe
Q psy14542 21 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN----SDEVLVLDR-VQREDAGMYQCHVSADDDSAQM-SAQVILG 94 (371)
Q Consensus 21 ~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~----~~~~l~i~~-~~~~d~G~Y~C~~~~~~~~~~~-~~~l~v~ 94 (371)
..+..|+.+.|.|. ..+.|.+.+.|++++..+... ....+.... ++..|+|.|+|.|.|..|.... .+.|.|.
T Consensus 149 ~~~~~~~~~~L~C~-a~G~P~P~i~W~k~~~~~~~~~~~~~~~~~~~~~~l~~~d~G~Y~C~A~N~~G~~~~~~~~l~V~ 227 (423)
T 3qs7_E 149 YFRKMENQDALVCI-SESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTIDLN 227 (423)
T ss_dssp EEEECSSSSCEEEE-EEESSCCEEEEEEC-------------CEEECCSEECCCCSSCEEEEEECSSCEEEEECEEEESS
T ss_pred cEeccCCceEEEEE-EeeecCCeEEEEECCCCCccccccccccccccceEEecccCeEEEEEEEcCCCCcceeeEEEEEe
Confidence 34667889999994 567899999999988754321 111111111 2578999999999998886643 3667766
Q ss_pred cceeeEecCCceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccc
Q psy14542 95 GELVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSG 174 (371)
Q Consensus 95 ~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~ 174 (371)
..+.+ ......+.+|+.+.|.|.+.+.++.+.++|++++..+.....+..... .+........
T Consensus 228 -~~p~~-~~~~~~v~~G~~v~L~C~~~g~~p~p~i~W~k~g~~l~~~~~~~~~~~---------------~~~~~~~~~~ 290 (423)
T 3qs7_E 228 -QTPQT-TLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTY---------------STNRTMIRIL 290 (423)
T ss_dssp -SCCCS-STTEEEEETTSCEEEEEEEEESSSCCCEEEEESSSBCCGGGEEEEEEE---------------ETTTEEEEEE
T ss_pred -cCCcc-CCCceEEeCCCeEEEEEEEEcCCCCcEEEEEECCEEccccceeecccc---------------cCCceeEEEE
Confidence 33333 223344589999999999998443389999999987654321110000 0011122335
Q ss_pred eEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeee--eeeeeeecCCeEEEEEEeecCCCC
Q psy14542 175 ELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEK--HRILNVKKDESVILPCSAQGNPLP 252 (371)
Q Consensus 175 ~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~--~~~~~~~~g~~~~l~C~~~~~p~~ 252 (371)
.|.|.+++.+| +|.|+|.|.|. ..... .|.|. .+|.+...+ .... +.+|+.+.|.|.+.|+|.|
T Consensus 291 ~L~I~~v~~~D-~G~Y~C~A~N~----~~~~~---~L~V~-----~~p~i~~~~~~~~~~-v~~G~~v~l~C~~~g~P~p 356 (423)
T 3qs7_E 291 FAFVSSVARND-TGYYTCSSSKH----PSQSA---LVTIV-----EKGFINATNSSEDYE-IDQYEEFCFSVRFKAYPQI 356 (423)
T ss_dssp EEEESSCCTTT-CEEEEEEETTE----EEEEE---EEEEE-----SSCEEEEC---CEEC-CCTTCCCCEEEEEEEESCC
T ss_pred EEEEeecCHHH-CEEEEEEEecC----CCceE---EEEEE-----eCCcceEcCCCccEE-ecCCCeEEEEEEEEEcCCC
Confidence 79999999999 99999999886 34444 77777 455554433 2344 8889999999999999999
Q ss_pred ceEEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEecCcc
Q psy14542 253 TIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKY 313 (371)
Q Consensus 253 ~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~ 313 (371)
.++|+++|..+....+.......+.+.....+|+|.|+|.|.|..|....++.|.|..+|.
T Consensus 357 ~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~D~G~YtC~A~N~~G~~~~s~~L~v~~~p~ 417 (423)
T 3qs7_E 357 RCTWTFSRKSFPCEQKGLDNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRSGTK 417 (423)
T ss_dssp EEEEEETTEEEECBCCBCSSSSEEEEECCCTTCCSCEEEEEEETTEEEEEEEEEC------
T ss_pred eEEEEECCEECCCccccccCCcEEEEEecccccCEEEEEEEEcCCceEEEEEEEEEecCCc
Confidence 9999999998866532111122333356778999999999999999999999999988776
No 48
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}
Probab=100.00 E-value=4.3e-34 Score=246.00 Aligned_cols=271 Identities=19% Similarity=0.272 Sum_probs=201.2
Q ss_pred cccceEEEeCCCcEEEeccCcEEEEEEecC------CCCCCeeEEEeCCEEE--eeC-------CeeEEEEccCCcCCCe
Q psy14542 8 KSSLSIEMSPSGQVVVDVGHRIELHCRVSP------KRLSSAKAWLKDGLVL--RRN-------SDEVLVLDRVQREDAG 72 (371)
Q Consensus 8 ~~~~~~~~~p~~~~~~~~G~~v~l~C~~~~------~~~~~~~~W~~~~~~~--~~~-------~~~~l~i~~~~~~d~G 72 (371)
...|.+...|.. ..+.+|+++.|.|.+.. +.|.+.+.|++++..+ ... .+.+|.|.+++.+|+|
T Consensus 16 ~~~p~~~~~~~~-~~v~~G~~v~L~C~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G 94 (339)
T 3o4o_C 16 RSCRFRGRHYKR-EFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMWAQDGALWLLPALQEDSG 94 (339)
T ss_dssp --CEEEEECSCC-EEEETTBCCEEECTTSCSSCCSTTSSCCBCCCEESSCCSCCSCCSSSCEEEETTEEEESSBCTTCCE
T ss_pred hhhHhhCcCceE-EEEECCccEEEEeccccccccccCCCCceEEEEECCCCcccCccccccEEeeCCeEEECCCCcccCE
Confidence 456788888888 99999999999995431 7788899999988763 221 3568999999999999
Q ss_pred EEEEEEEcCCCCeEEEEEEEEecceeeE--ecCCceeeecCCcEEEEEE-----ecCCCCCceEEEeeCCEEeeeCCeeE
Q psy14542 73 MYQCHVSADDDSAQMSAQVILGGELVEI--ASSNQVVVDVGHRIELHCR-----VSPKRLSSAKAWLKDGLVLRRNSDEV 145 (371)
Q Consensus 73 ~Y~C~~~~~~~~~~~~~~l~v~~~~~~~--~~~~~~~~~~g~~v~l~C~-----~~~~~~~~~v~W~~~~~~~~~~~~~~ 145 (371)
.|+|.+.+..+.....+.|.|...+... .......+.+|+.+.|.|. +.+.+. +.+.|++++..+.....
T Consensus 95 ~Y~C~~~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~g~p~-~~v~W~k~g~~~~~~~~-- 171 (339)
T 3o4o_C 95 TYVCTTRNASYCDKMSIELRVFENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTD-VKIQWYKDSLLLDKDNE-- 171 (339)
T ss_dssp EEECCEEETTEEEEEEEEEEEECSCGGGHHHHCEEEEEETTSCEEEECCSCTTTCCSSSC-CCBCCEESSCBCCTTCS--
T ss_pred EEEEEEECCcceEEEEEEEEEEcCCCccccccccceEEECCCCEEEEecCCcccccCCCC-ceEEEecCCeeCCCCCc--
Confidence 9999999988877888888887432211 1122234589999999999 666666 89999999987764421
Q ss_pred EEEcccCcCCCeeEEEEEeCCceeEecc-ceEEEEEeecCCccceeEEEeeccccc----eeeeeeccceeeeecchhcc
Q psy14542 146 LVLDRVQREDAGMYQCHIEDGKYHMLSS-GELIIHQVDESDRYRSYQCRGVNKLTG----ASLLSVNRGRLSLTENKRLL 220 (371)
Q Consensus 146 ~~~~~~~~~~~g~y~~~~~~~~~~~~~~-~~l~i~~~~~~d~~g~y~C~~~~~~~~----~~~~~~~~~~l~v~~~~~~~ 220 (371)
++..... ..|.|.+++.+| .|.|+|.+.|. .+ ...... .|.|.......
T Consensus 172 ---------------------~~~~~~~~~~L~i~~v~~~d-~G~Y~C~a~n~-~g~~~~~~~~~~---~l~V~~~~~~~ 225 (339)
T 3o4o_C 172 ---------------------KFLSVRGTTHLLVHDVALED-AGYYRCVLTFA-HEGQQYNITRSI---ELRIKKKKEET 225 (339)
T ss_dssp ---------------------SEEECTTSSEEEESSCCGGG-CEEEEEEEECC-BTTBCCEEEEEE---EEEEECCCCCC
T ss_pred ---------------------eeEEcCCcceEEEcccCHhh-CeEEEEEEEEC-CCCeEEEEEEEE---EEEEEcCCCCC
Confidence 2222221 479999999999 99999999987 44 233344 67776543334
Q ss_pred ccceeeeeeeeeeeecCCeEEEEEEe---ecCC-CCceEEEeCCcccccC---------CceE-Eecc------eEEEec
Q psy14542 221 SAAKMFEKHRILNVKKDESVILPCSA---QGNP-LPTIKWYKQDSPVEES---------DRIQ-RIGS------SLSISH 280 (371)
Q Consensus 221 ~p~~~~~~~~~~~~~~g~~~~l~C~~---~~~p-~~~v~W~~~~~~~~~~---------~~~~-~~~~------~l~i~~ 280 (371)
+|.+...+.... +..|+.+.|.|.+ .|.| .+.+.|++++..+... .++. ..++ .|.|.+
T Consensus 226 ~P~i~~~~~~~~-v~~G~~v~L~C~~~~~~g~P~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~ 304 (339)
T 3o4o_C 226 IPVIISPLKTIS-ASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENYIEVPLIFDP 304 (339)
T ss_dssp CCEECCCSCCCC-CCCCSCCCCCCCEEESSSCCSSCEEEEESSSSCSSSSSCSSSCEECCCEECCCSSSCEEEECCEECS
T ss_pred CCEEecCCceeE-eccCCCEEEEEEEECCCCCCCCceEEEEECCeecccccccccceecceEEecccCceEEEEEEEEEE
Confidence 566665555555 8899999999999 8888 7899999999876432 1211 1122 799999
Q ss_pred cCCCCC-eEEEEEEEcCCCCceeEEEEEEe
Q psy14542 281 VEESDS-GVWNCVANNSEGQDKMQLFIQYA 309 (371)
Q Consensus 281 ~~~~d~-G~Y~C~a~n~~g~~~~~~~l~v~ 309 (371)
+..+|+ |.|+|.|.|..|..+..+.+.+.
T Consensus 305 v~~~d~~G~Y~C~a~N~~G~~~~~~~~~~~ 334 (339)
T 3o4o_C 305 VTREDLHMDFKCVVHNTLSFQTLRTTVKEH 334 (339)
T ss_dssp SCCCSCCCCCEEEEEETTEEECCBCCCCC-
T ss_pred echhhcCccEEEEEEeccCceEEEEEhhHh
Confidence 999997 99999999999998877666543
No 49
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*
Probab=100.00 E-value=1.3e-32 Score=237.78 Aligned_cols=266 Identities=11% Similarity=0.164 Sum_probs=162.6
Q ss_pred EeCCCcEEEeccCcEEEEEEecCCCC-----------CCeeEEEeCCE------EEe---eC-----CeeEEEEccCCcC
Q psy14542 15 MSPSGQVVVDVGHRIELHCRVSPKRL-----------SSAKAWLKDGL------VLR---RN-----SDEVLVLDRVQRE 69 (371)
Q Consensus 15 ~~p~~~~~~~~G~~v~l~C~~~~~~~-----------~~~~~W~~~~~------~~~---~~-----~~~~l~i~~~~~~ 69 (371)
+.+...+.+.+|+++.|.|.+ .+.| .+.+.|+|++. .+. .. ....|.|.+++.+
T Consensus 11 ~~~~~~v~v~~G~~v~L~C~~-~~~p~~~~ys~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~ 89 (349)
T 4dep_C 11 LDTMRQIQVFEDEPARIKCPL-FEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTLLN 89 (349)
T ss_dssp ECCCCCCEEETTSCEEEECTC-CCCCSSSCHHHHHHTTCEEEEEEEESSCCCEEECCCCCGGGCEEEETTEEEESSCCGG
T ss_pred cceeeeEEEecCCeEEEEccc-cccccccccccccCCCceEEEEECCCCCcccccccccccCceEeecCCEEEEccCChh
Confidence 444444789999999999954 4333 48999999873 111 00 3568999999999
Q ss_pred CCeEEEEEEEcCCCCeEEEEEEEEecceeeEec----CCceeeecCCcEEEEEEe-----cCCCCCceEEEeeCCEEeee
Q psy14542 70 DAGMYQCHVSADDDSAQMSAQVILGGELVEIAS----SNQVVVDVGHRIELHCRV-----SPKRLSSAKAWLKDGLVLRR 140 (371)
Q Consensus 70 d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~----~~~~~~~~g~~v~l~C~~-----~~~~~~~~v~W~~~~~~~~~ 140 (371)
|+|.|+|.+.+..+.....+.|.|...+..... .....+.+|+.+.|.|.+ .+.+. +.+.|++++..+..
T Consensus 90 D~G~Y~C~a~n~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~g~p~-~~v~W~k~~~~l~~ 168 (349)
T 4dep_C 90 DTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVK-PTITWYMGCYKIQN 168 (349)
T ss_dssp GCEEEEEEEECSSCEEEEEEEEEEECCCTTSCCSCCCCEEEEETTCSEEEEECCSCTTSSCTTSC-CEEEEEETTEECCS
T ss_pred hCEEEEEEEecCCceEEEEEEEEEecCCcccCcccccCcceeeecCccEEEEcCCCcccccCCCC-ceEEEeeCCEECCC
Confidence 999999999998887788888888742221111 112234789999999985 55566 89999999987754
Q ss_pred CCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeecccccee---eeeeccceeeeecch
Q psy14542 141 NSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGAS---LLSVNRGRLSLTENK 217 (371)
Q Consensus 141 ~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~---~~~~~~~~l~v~~~~ 217 (371)
... + ......|.|.+++.+| +|.|+|.+.|...+.. .... .+.|....
T Consensus 169 ~~~------------------------~-~~~~~~L~i~~v~~~d-~G~Y~C~a~n~~~g~~~~~~~~~---~l~v~~~~ 219 (349)
T 4dep_C 169 FNN------------------------V-IPEGMNLSFLIALISN-NGNYTCVVTYPENGRTFHLTRTL---TVKVVGSP 219 (349)
T ss_dssp CSS------------------------E-EEETTEEEEESCCGGG-CEEEEEEEEEEETTEEEEEEEEE---EEEEECCG
T ss_pred ccc------------------------e-eecCCEEEEeeeeecC-CcEEEEEEEEeeCCEEEEEEEEE---EEEEEccC
Confidence 211 1 1112579999999999 9999999999833543 3333 55555321
Q ss_pred hc-cccceeeeeeee--eeeecCCeEEEEEEee----cCCCCceEEEeCCccccc-CCceE-------------EecceE
Q psy14542 218 RL-LSAAKMFEKHRI--LNVKKDESVILPCSAQ----GNPLPTIKWYKQDSPVEE-SDRIQ-------------RIGSSL 276 (371)
Q Consensus 218 ~~-~~p~~~~~~~~~--~~~~~g~~~~l~C~~~----~~p~~~v~W~~~~~~~~~-~~~~~-------------~~~~~l 276 (371)
.. .+|.+....... . +..|+.+.|.|.+. +.|.+.+.|++++..+.. ..++. ...++|
T Consensus 220 ~~~~~p~i~~~~~~~~~~-v~~G~~v~l~C~~~~~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L 298 (349)
T 4dep_C 220 KNAVPPVIHSPNDHVVYE-KEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQIL 298 (349)
T ss_dssp GGCCSCEEC-----------------CCCEEEEECCCTTCCCEEEEESSCC--------CCCCEEEECCTTCCEEEEECC
T ss_pred CCCCCCeEecCCCceeEE-EecCCcEEEEEEEEEccCCCCCCEEEEEECCEEccccCCccccccceeeecCCCcEEEEEE
Confidence 11 145554444322 4 88999999999998 568899999999988765 22221 123459
Q ss_pred EEeccCCCCC-eEEEEEEEcCCCCceeEEEEEEecCc
Q psy14542 277 SISHVEESDS-GVWNCVANNSEGQDKMQLFIQYAHGK 312 (371)
Q Consensus 277 ~i~~~~~~d~-G~Y~C~a~n~~g~~~~~~~l~v~~~p 312 (371)
.|.++..+|+ |.|+|.|.|..|.....+.|.|..++
T Consensus 299 ~i~~v~~~d~~G~Y~C~a~N~~G~~~~~~~l~v~~~~ 335 (349)
T 4dep_C 299 SIKKVTSEDLKRSYVCHARSAKGEVAKAAKVKQKVPA 335 (349)
T ss_dssp -------------CEEEEECSSCEEEEECC-------
T ss_pred EEeeccHHHcCCcEEEEEEcCCCcEEEEEEEeeecCC
Confidence 9999999999 99999999999999999999887633
No 50
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J
Probab=100.00 E-value=6.3e-31 Score=242.77 Aligned_cols=294 Identities=18% Similarity=0.273 Sum_probs=212.9
Q ss_pred eeeEEecccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEe---------------eC----------
Q psy14542 2 QLFIQVKSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLR---------------RN---------- 56 (371)
Q Consensus 2 ~~~~~v~~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~---------------~~---------- 56 (371)
.+.|.|..+|.+...+.. ..+.+|+.++|.|.+....+.+.+.|+|++.... ..
T Consensus 104 ~~~l~V~~~p~~~~~~~~-~~v~~G~~v~l~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 182 (585)
T 2ocw_A 104 DVSLEVSQGPGLLNDTKV-YTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQ 182 (585)
T ss_pred EEEEEEecCccccCCCcc-EEEEcCCCEEEEEEecCCCCCccEEEEECCCCCceEEecCCcccCccccCcEEEEeccCCC
Confidence 356677777777777777 8899999999999776566677899999864311 00
Q ss_pred CeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEEEEEEecceeeEecCCceeeecCCcEEEEEEecCCCCC-ceEEEe-eC
Q psy14542 57 SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGELVEIASSNQVVVDVGHRIELHCRVSPKRLS-SAKAWL-KD 134 (371)
Q Consensus 57 ~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~-~~v~W~-~~ 134 (371)
...+|.|.+++.+|+|.|+|.+.+..+.....+.|.|...+|. ...+.+|+.+.|.|.+.+.+++ +.+.|+ ++
T Consensus 183 ~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~p~-----~~~~~~G~~v~l~C~~~~~~~~~~~~~w~~~~ 257 (585)
T 2ocw_A 183 LLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPE-----LVYEDLRGSVTFHCALGPEVANVAKFLCRQSS 257 (585)
T ss_pred cEEEEEEccCChhHCeEEEEEeccCCccccceEEEEEccCCCc-----eeEEcCCCcEEEEEEcCCCCCCceEEEEEeCC
Confidence 1237999999999999999999998888888888888743322 2234789999999998544433 688886 77
Q ss_pred CE---Eeee--------------------CCeeEEEEcccCcCCCeeEEEEEeCCc------------------------
Q psy14542 135 GL---VLRR--------------------NSDEVLVLDRVQREDAGMYQCHIEDGK------------------------ 167 (371)
Q Consensus 135 ~~---~~~~--------------------~~~~~~~~~~~~~~~~g~y~~~~~~~~------------------------ 167 (371)
+. .+.. ...+.|.+.++..+|.|.|+|.+.+..
T Consensus 258 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~L~i~~v~~~d~G~Y~C~a~n~g~~~~~~~~~~~~l~V~~~p~~~~~ 337 (585)
T 2ocw_A 258 GENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRS 337 (585)
T ss_pred CCCcceEEeCCCcCCcccCCceEeeccCCCcEEEEEEccCChhhCEEEEEEEEcCCCccccCceeeEEEEEecccccccC
Confidence 62 1110 112368899999999999997654210
Q ss_pred -------------------------e----eEec--c-----------------------------c--eEEEEEeecCC
Q psy14542 168 -------------------------Y----HMLS--S-----------------------------G--ELIIHQVDESD 185 (371)
Q Consensus 168 -------------------------~----~~~~--~-----------------------------~--~l~i~~~~~~d 185 (371)
. .... + + .|.|.+++.+|
T Consensus 338 ~~~~~~~~G~~v~l~C~~~~~p~p~i~~w~~W~~~~~g~~~~l~~~~~~~~~~~~~r~~~~~~~~~g~~~L~I~~v~~~D 417 (585)
T 2ocw_A 338 PTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRD 417 (585)
T ss_pred CcceEEEeCCcEEEEEecCCCCCccEEEEEEEEccCCCCCceeeeecceeecccCCCEEEeccCCCcEEEEEECCCChhh
Confidence 0 0000 1 1 17788899999
Q ss_pred ccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEee----cCCCCceEEEeCCc
Q psy14542 186 RYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQ----GNPLPTIKWYKQDS 261 (371)
Q Consensus 186 ~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~----~~p~~~v~W~~~~~ 261 (371)
.|.|+|.+ |. .+...... .|.|... +|.+.. +.... +..|+.+.|.|.+. +.|.+.+.|+++|.
T Consensus 418 -~G~Y~C~a-n~-~g~~~~~~---~l~V~~~----~p~~~~-~~~~~-v~~G~~v~L~C~~~~~~~~~p~~~v~W~k~g~ 485 (585)
T 2ocw_A 418 -AGFYWCLT-NG-DTLWRTTV---EIKIIEG----EPNLKV-PGNVT-AVLGETLKVPCHFPCKFSSYEKYWCKWNNTGC 485 (585)
T ss_pred -CEEEEEcc-cC-CCccceeE---EEEEecC----cccccc-CCcee-EecCCcEEEEEEecCCCCCCccEEEEEeecCc
Confidence 99999999 66 56655555 7777632 333332 44455 89999999999986 67778999999998
Q ss_pred ccccCCc------eEE-----ecceEEEeccCCCCCeEEEEEEEcCCCCce-eEEEEEEecCcc
Q psy14542 262 PVEESDR------IQR-----IGSSLSISHVEESDSGVWNCVANNSEGQDK-MQLFIQYAHGKY 313 (371)
Q Consensus 262 ~~~~~~~------~~~-----~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~-~~~~l~v~~~p~ 313 (371)
.+..... +.. ..+.|.|.++..+|+|.|+|.|.|..|... ..+.|.|..+|.
T Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~~l~V~~~p~ 549 (585)
T 2ocw_A 486 QALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQGHFYGETAAVYVAVEERKA 549 (585)
T ss_pred eeeeccCCCCCcceEEecCcccEEEEEECCCCcccCeEEEEEeEeCCCccEEEEEEEEEEeeee
Confidence 7644321 111 124899999999999999999999999765 448899998874
No 51
>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}
Probab=100.00 E-value=5.7e-32 Score=231.50 Aligned_cols=268 Identities=14% Similarity=0.194 Sum_probs=176.0
Q ss_pred cceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEE----Eee-------------------CCeeEEEEccC
Q psy14542 10 SLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLV----LRR-------------------NSDEVLVLDRV 66 (371)
Q Consensus 10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~----~~~-------------------~~~~~l~i~~~ 66 (371)
++.|...|.. +.+.+|+++.|.|.+....|.+.+.|+|++.. +.. ....+|.|.++
T Consensus 3 ~~~v~~~p~~-~~v~~G~~v~L~C~~~~~~p~~~v~W~k~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v 81 (327)
T 2wng_A 3 ELQVIQPDKS-VSVAAGESAILHCTVTSLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSESTKRENMDFSISISNI 81 (327)
T ss_dssp CCCEECCCSE-EEEETTSCEEECCEESCCCSCCCEEEEESCSTTCEEEEETTSSCCTTEEECC---CTTCCBCCEEECSC
T ss_pred eeEEEcCCCc-eEEecCCcEEEEEEccCcCCCceEEEEECCCCCceEEEEcCCCCcceeeeecccccccCceeEEEEccC
Confidence 4566666666 89999999999997655447789999998632 111 13457999999
Q ss_pred CcCCCeEEEEEEEcCCCCeE-----EEEEEEEec--ceeeEecCCceeeecCCcEEEEEEecCCCCC-ceEEEeeCCEEe
Q psy14542 67 QREDAGMYQCHVSADDDSAQ-----MSAQVILGG--ELVEIASSNQVVVDVGHRIELHCRVSPKRLS-SAKAWLKDGLVL 138 (371)
Q Consensus 67 ~~~d~G~Y~C~~~~~~~~~~-----~~~~l~v~~--~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~-~~v~W~~~~~~~ 138 (371)
+.+|+|.|+|.+.+..+... ..+.|.|.. .++.+. .+...+.+|+.+.|.|.+.+.+++ ..+.|++++..+
T Consensus 82 ~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~p~~p~i~-~~~~~~~~g~~~~l~C~~~g~p~~~~~v~W~k~g~~l 160 (327)
T 2wng_A 82 TPADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVS-GPAARATPQHTVSFTCESHGFSPRDITLKWFKNGNEL 160 (327)
T ss_dssp CGGGCEEEEEEEEESSTTCEEEEECCCEEEEEEBCCCCCEEE-CCSSCBCTTCEEEEEEEEEEEBSSCCEEEEEETTEEC
T ss_pred ccccCeEEEEEeecCCCcceeEeecCcEEEEEEecCCCceee-ccccccCCCCEEEEEEEEeCccCCCcEEEEEECCEEc
Confidence 99999999999998765421 235666653 223333 334455889999999999987763 399999999887
Q ss_pred eeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeecccccee---eeeeccceeeeec
Q psy14542 139 RRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGAS---LLSVNRGRLSLTE 215 (371)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~---~~~~~~~~l~v~~ 215 (371)
........ ...+.| .+.+. +.|.|.....+| .|.|+|.+.|. .+.. .... .+.+..
T Consensus 161 ~~~~~~~~-----~~~~~~---------~~~~~--s~L~i~~~~~d~-~g~Y~C~a~n~-~~~~~~~~~~~---~~~~~v 219 (327)
T 2wng_A 161 SDFQTNVD-----PVGESV---------SYSIH--STAKVVLTREDV-HSQVICEVAHV-TLQGDPLRGTA---NLSETI 219 (327)
T ss_dssp CCEEEEEE-----CSSCCS---------CEEEE--EEEEEECCTTGG-GCEEEEEEECT-TSCSCCEEEEE---EGGGTB
T ss_pred cccccccc-----cccCCC---------ceEEE--EEEEEechhcCc-CceEEEEEecc-ccCCCcccceE---Eecccc
Confidence 65421100 001122 22221 467787777777 89999999997 4431 2222 332221
Q ss_pred chhccccceeeeeeeeeeeecCCeEEEEEEeecCC-CC-ceEEEeCCcccccCC--ceE-E------ecceEEEeccCCC
Q psy14542 216 NKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNP-LP-TIKWYKQDSPVEESD--RIQ-R------IGSSLSISHVEES 284 (371)
Q Consensus 216 ~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p-~~-~v~W~~~~~~~~~~~--~~~-~------~~~~l~i~~~~~~ 284 (371)
. .+|.+...+.. +..|+.+.|.|.+.|.+ ++ .+.|+++|..+.... ++. . ....|.|..+..+
T Consensus 220 ~---~~P~i~~~~~~---~~~G~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~ 293 (327)
T 2wng_A 220 R---VPPTLEVTQQP---VRAENQVNVTCQVRKFYPQRLQLTWLENGNVSRTETASTVTENKDGTYNWMSWLLVNVSAHR 293 (327)
T ss_dssp C---BCCEEEEEEEC---CSSTTCCEEEEEEEEEBSSCEEEEEEETTEEEEEEECCSCEECTTSCEEEEEEEEC------
T ss_pred C---CCCEEEEecCC---cCCCCcEEEEEEEccccCCCcEEEEEECCeEccCcccCceEECCCCcEEEEEEEEEcccccc
Confidence 1 56666655443 77899999999999854 44 799999998775431 111 1 1135888889999
Q ss_pred CCeEEEEEEEcCCCCc-eeEEEE
Q psy14542 285 DSGVWNCVANNSEGQD-KMQLFI 306 (371)
Q Consensus 285 d~G~Y~C~a~n~~g~~-~~~~~l 306 (371)
|+|.|+|.|.|..|.. +.++.+
T Consensus 294 d~G~Y~C~a~N~~~~~~s~~~~~ 316 (327)
T 2wng_A 294 DDVKLTCQVEHDGQPAVSKSHDL 316 (327)
T ss_dssp -CCEEEEEEEETTCCCEEEEEEC
T ss_pred CCCEEEEEEEeCCCCCchhheEE
Confidence 9999999999999875 444433
No 52
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}
Probab=100.00 E-value=5.6e-32 Score=244.53 Aligned_cols=258 Identities=16% Similarity=0.181 Sum_probs=177.6
Q ss_pred eEEecccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC---------------CeeEEEEccCCc
Q psy14542 4 FIQVKSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN---------------SDEVLVLDRVQR 68 (371)
Q Consensus 4 ~~~v~~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~---------------~~~~l~i~~~~~ 68 (371)
.|.|...|.+ .|.. ..+.+|+.+.|.|.+..+.|.+.+.|++++..+... ...+|.|.+++.
T Consensus 223 ~l~V~~~p~~--~p~~-~~v~~G~~v~L~C~~~~g~p~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~ 299 (527)
T 3qs9_E 223 TIDLNQTPQT--TLPQ-LFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVAR 299 (527)
T ss_dssp EEESSSCCCC--SCCE-EEECTTSCEEEEEEEEESSSCCCEEEECSSSCCCGGGEEEEEEEETTTEEEEEEEEEESSCCG
T ss_pred EEEEeccCcc--CCCc-eEEeCCCeEEEEEEEccCCCCeEEEEEECCEECCCCceeeeeeeccCcceeeEEEEEEccCCc
Confidence 3444444443 3344 889999999999976557889999999988754321 234699999999
Q ss_pred CCCeEEEEEEEcCCCCeEEEEEEEEecceeeEecCC---ceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeE
Q psy14542 69 EDAGMYQCHVSADDDSAQMSAQVILGGELVEIASSN---QVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEV 145 (371)
Q Consensus 69 ~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~---~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~ 145 (371)
+|+|.|+|.+.|. ....+.|.|. .++.+...+ ...+.+|+.+.|.|.+.+.|. +.++|+|++..+......
T Consensus 300 ~DsG~Y~C~a~N~---~~~~~~L~V~-~~p~i~~~~~~~~~~v~~G~~v~L~C~~~g~P~-p~i~W~k~g~~l~~~~~~- 373 (527)
T 3qs9_E 300 NDTGYYTCSSSKH---PSQSALVTIV-EKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQ-IRCTWTFSRKSFPCEQKG- 373 (527)
T ss_dssp GGCEEEEEEETTE---EEEEEEEEEC---CEEECCCSCCEECCCTTCCCCEEEEEEEESC-CEEEEEETTEEEECBCCB-
T ss_pred ccCeEEEEEEEeC---CCceEEEEEE-ccCccccccCcccEEEcCCCeEEEEEEEEecCC-CEEEEEECCEECcCCccc-
Confidence 9999999999886 6777888888 455444333 233478999999999999888 899999999988654310
Q ss_pred EEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhcccccee
Q psy14542 146 LVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKM 225 (371)
Q Consensus 146 ~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~ 225 (371)
......|.|.+++.+| +|.|+|.|.|. .|.....+ .|.|. .+|.+.
T Consensus 374 ------------------------~~~~~~L~I~~v~~~D-~G~YtC~A~N~-~g~~~~~~---~L~V~-----~~P~i~ 419 (527)
T 3qs9_E 374 ------------------------LDNGYSISKFCNHKHQ-PGEYIFHAEND-DAQFTKMF---TLNIR-----RKPQVL 419 (527)
T ss_dssp ------------------------CSSSSEEEEECCCTTC-CSCEEEEEEET-TEEEEEEE---EEC-------CCCEEE
T ss_pred ------------------------ccCCcEEEEecCCccc-CEEEEEEEEeC-CCcEEEEE---EEEEe-----cCCeEE
Confidence 0122578999999999 99999999999 77776666 88887 677765
Q ss_pred eeeeeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccCCc-------------eE--EecceEEEeccCCCCCeEEE
Q psy14542 226 FEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDR-------------IQ--RIGSSLSISHVEESDSGVWN 290 (371)
Q Consensus 226 ~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~-------------~~--~~~~~l~i~~~~~~d~G~Y~ 290 (371)
.... | ..|.|.+.|.|.|.+.|++++........ .. .....+.+.-...+|+|.|+
T Consensus 420 ~~~~-------~--~~l~C~a~g~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~d~G~Y~ 490 (527)
T 3qs9_E 420 AEAS-------A--SQASCFSDGYPLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNMSEAIKGFLVK 490 (527)
T ss_dssp ECCC-------C--E---EEEECSSCCEEEEECCC-----CCCCCCCCEEEC---------CEEEEECCCCCSSCSCEEE
T ss_pred EeCC-------C--CEEEEEEEEEcCCeEEEEECCCCcCCCccccccccceeccccccCCceEEEEEEEEEEcCCCEEEE
Confidence 4321 2 35799999999999999987654321100 00 00112233333456999999
Q ss_pred EEEEcCCCCceeEEEEEEecCcc
Q psy14542 291 CVANNSEGQDKMQLFIQYAHGKY 313 (371)
Q Consensus 291 C~a~n~~g~~~~~~~l~v~~~p~ 313 (371)
|.|.|..|.....+.|.|..+..
T Consensus 491 C~A~N~~G~~~~~~~L~V~~p~~ 513 (527)
T 3qs9_E 491 CCAYNSLGTSCETILLNSPGPFP 513 (527)
T ss_dssp EEEECSSCEEEEEEEC-------
T ss_pred EEEEeCCCCceeEEEEecCCCce
Confidence 99999999999999998876655
No 53
>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D
Probab=100.00 E-value=3.7e-32 Score=231.45 Aligned_cols=272 Identities=15% Similarity=0.186 Sum_probs=178.8
Q ss_pred EEecccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC-----CeeEEEEccCCcCCCeEEEEEEE
Q psy14542 5 IQVKSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN-----SDEVLVLDRVQREDAGMYQCHVS 79 (371)
Q Consensus 5 ~~v~~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~-----~~~~l~i~~~~~~d~G~Y~C~~~ 79 (371)
..+.++|.|...|.. .+.+|++++|.|.+... .+.+.|+|+|..+... ....|.|.+++.+|+|.|+|.+.
T Consensus 19 ~~~~~~P~i~~~p~~--~v~~G~~v~L~C~~~~~--~~~~~W~k~g~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~ 94 (316)
T 3vh8_G 19 MGGQDKPFLSAWPSA--VVPRGGHVTLRCHYRHR--FNNFMLYKEDRIHIPIFHGRIFQESFNMSPVTTAHAGNYTCRGS 94 (316)
T ss_dssp -----CCEEEEESCS--EEETTSCEEEEEEBTTB--CCSEEEEESSCSSSCHHHHCCBSSCEEECSCCGGGCEEEEEEEB
T ss_pred cCCCCCCEeeccCCC--ccCCCCCEEEEEEccCC--CceEEEEeCCCccceeecCCcceEEEEECCCCcccCeEEEEEEE
Confidence 345678999999985 68899999999965443 5789999998765432 56789999999999999999998
Q ss_pred cCC-----CCeEEEEEEEEec--ceeeEecCCceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccC
Q psy14542 80 ADD-----DSAQMSAQVILGG--ELVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQ 152 (371)
Q Consensus 80 ~~~-----~~~~~~~~l~v~~--~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~ 152 (371)
+.. ......+.|.|.. .+|.+...+...+.+|+.++|.|.+.+. . ..+.|++++..+........
T Consensus 95 ~~~~~~~~~~~s~~~~l~V~~~~~~p~~~~~~~~~v~~G~~v~L~C~~~~~-~-~~~~w~k~g~~~~~~~~~~~------ 166 (316)
T 3vh8_G 95 HPHSPTGWSAPSNPVVIMVTGNHRKPSLLAHPGPLVKSGERVILQCWSDIM-F-EHFFLHKEGISKDPSRLVGQ------ 166 (316)
T ss_dssp CSSSSSSBCCCCCCEEEEEECSSCCCEEEEESCSEEETTCCEEEEEEESSC-C-SEEEEEETTCCSCCEEEECE------
T ss_pred cCCCCcceecCCCcEEEEEecCCCCCeEEecCCCccCCCCeEEEEEcCCCC-C-cEEEEEECCCccccceeeee------
Confidence 532 2234556677653 3455555555557899999999999543 3 68999999876543210000
Q ss_pred cCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeee---eeccceeeeecchhccccceeeeee
Q psy14542 153 REDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLL---SVNRGRLSLTENKRLLSAAKMFEKH 229 (371)
Q Consensus 153 ~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~---~~~~~~l~v~~~~~~~~p~~~~~~~ 229 (371)
.........|.|.+++.+| +|.|+|.+.|. .+.... +. ...+.|.. ...+|.+...+.
T Consensus 167 --------------~~~~~~~~~L~i~~v~~~D-~G~Y~C~a~n~-~g~~~~s~~s~-~~~l~V~~--~~~~p~i~~~~~ 227 (316)
T 3vh8_G 167 --------------IHDGVSKANFSIGPMMLAL-AGTYRCYGSVT-HTPYQLSAPSD-PLDIVVTG--PYEKPSLSAQPG 227 (316)
T ss_dssp --------------EETTEEEEEEEECSCCGGG-CEEEEEEEECT-TCTTBCCCCCC-CEEEEEEC--SSCCCEEEEESC
T ss_pred --------------ecCCCceEEEEECCCChhh-CceEEEEEecC-CCCccccCCCC-CEEEEecC--CCCCCeEEeCCC
Confidence 0000122579999999999 99999999987 443111 11 11444442 224555555443
Q ss_pred eeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccCCceE-----EecceEEEeccCCCCCeEEEEEEEcCCCC-----
Q psy14542 230 RILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQ-----RIGSSLSISHVEESDSGVWNCVANNSEGQ----- 299 (371)
Q Consensus 230 ~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~-----~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~----- 299 (371)
. . +.+|+.++|.|.+. .|.+.+.|+++|..+....... ...+.|.|.++. |+|.|+|.|.|..+.
T Consensus 228 ~-~-v~~G~~v~L~C~~~-~~~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~--D~G~Y~C~a~n~~~~~~~s~ 302 (316)
T 3vh8_G 228 P-K-VQAGESVTLSCSSR-SSYDMYHLSREGGAHERRLPAVRKVNRTFQADFPLGPAT--HGGTYRCFGSFRHSPYEWSD 302 (316)
T ss_dssp S-C-CCTTSCCEEEEEES-SCCSEEEEEETTSSCCEEEECEECTTSCEEEEEECC-------CEEEEEEEBTTBTTEECC
T ss_pred C-e-ecCCCcEEEEEECC-CCCcEEEEEECCCcCCCceeceeccCCceeEEEEcCCcC--CCEEEEEEeecCCCchhccC
Confidence 3 3 88999999999987 5778999999998765432211 122579999998 999999999997763
Q ss_pred ceeEEEEEEecCc
Q psy14542 300 DKMQLFIQYAHGK 312 (371)
Q Consensus 300 ~~~~~~l~v~~~p 312 (371)
.+..+.|.|..+|
T Consensus 303 ~S~~~~l~V~g~p 315 (316)
T 3vh8_G 303 PSDPLLVSVTGNP 315 (316)
T ss_dssp CCCCEEC------
T ss_pred CCCcEEEEEeCCC
Confidence 4666777777665
No 54
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*
Probab=100.00 E-value=2.5e-31 Score=220.50 Aligned_cols=239 Identities=15% Similarity=0.216 Sum_probs=176.1
Q ss_pred EEeccCcEEEEEEecCCCCCC--eeEEEeCCEEEeeC---CeeEEEEccC---CcCCCe--EEEEEEEcCCCCeEEEEEE
Q psy14542 22 VVDVGHRIELHCRVSPKRLSS--AKAWLKDGLVLRRN---SDEVLVLDRV---QREDAG--MYQCHVSADDDSAQMSAQV 91 (371)
Q Consensus 22 ~~~~G~~v~l~C~~~~~~~~~--~~~W~~~~~~~~~~---~~~~l~i~~~---~~~d~G--~Y~C~~~~~~~~~~~~~~l 91 (371)
.+.+|++++|.|.+....|.+ .+.|+|++..+... ....+.+..+ +.+|+| .|+|.+.+..+.....+.|
T Consensus 14 ~v~~G~~v~l~C~~~g~~p~p~~~v~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~d~g~g~Y~C~a~n~~~~~~~~~~l 93 (265)
T 2oz4_A 14 VLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTV 93 (265)
T ss_dssp EEETTEEEEEEEEEESCSCGGGCEEEEEETTEECCCEEEECSSEEEEEEEEEECGGGCEEEEEEEEEEETTEEEEEEEEE
T ss_pred eEecCCCEEEEEEccCCCCCcceEEEEEeCCEECCceEeeCCCeEEEEeecccccccCCcceEEEEEecCCCCcEEEEEE
Confidence 689999999999766546765 89999999876543 3345666655 778888 4999999988887788888
Q ss_pred EEecc-eeeEecCCceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeE
Q psy14542 92 ILGGE-LVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHM 170 (371)
Q Consensus 92 ~v~~~-~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~ 170 (371)
.|... ++.+.. ....+.+|+.+.|.|.+. +. +.++| +|..+....
T Consensus 94 ~V~~~p~p~~~~-~~~~v~~G~~v~l~C~~~--p~-~~i~W--~g~~~~~~~---------------------------- 139 (265)
T 2oz4_A 94 TIYSFPAPNVIL-TKPEVSEGTEVTVKCEAH--PR-AKVTL--NGVPAQPLG---------------------------- 139 (265)
T ss_dssp EEECCCCCEEEE-SCSEEETTCEEEEEEECC--TT-SEEEE--SSCSSSCCS----------------------------
T ss_pred EEeCCCCceeec-CCceecCCCcEEEEEEcc--CC-CEEEE--CCEEccCCC----------------------------
Confidence 88733 334443 344457899999999998 55 89999 666552210
Q ss_pred eccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeee--eeeeeeeecCCeEEEEEEeec
Q psy14542 171 LSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFE--KHRILNVKKDESVILPCSAQG 248 (371)
Q Consensus 171 ~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~--~~~~~~~~~g~~~~l~C~~~~ 248 (371)
..+.|.|..+..+| .|.|+|.+.+...|..........|.|. .+|.+... +.... +.+|+.+.|.|.+.|
T Consensus 140 -~~~~l~i~~~~~~~-~g~Y~C~a~n~~~g~~~~~s~~~~l~V~-----~~p~~~~~~~p~~~~-v~~g~~~~l~C~~~g 211 (265)
T 2oz4_A 140 -PRAQLLLKATPEDN-GRSFSCSATLEVAGQLIHKNQTRELRVL-----YGPRLDERDCPGNWT-WPENSQQTPMCQAWG 211 (265)
T ss_dssp -SEECCEEECCGGGT-TEEEEEEEEEECSSSEEEEEEEEEEEEE-----EEEECCGGGSCSEEE-EETTCEECCCCCCEE
T ss_pred -CcEEEEEccccccC-CceEEEEEEcCCCCCcccccccEEEEEE-----eCCccccccCCCccE-EcCCCeEEEEeECcc
Confidence 01467788888888 9999999986534554421112267776 55555433 23444 889999999999999
Q ss_pred CCCCceEEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEecC
Q psy14542 249 NPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHG 311 (371)
Q Consensus 249 ~p~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~ 311 (371)
.|.|.+.|++++..+... +.+. .+..+|+|.|+|.|.|..|.....+.|.|.++
T Consensus 212 ~P~p~i~W~~~~~~~~~~-------g~~~--~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~p 265 (265)
T 2oz4_A 212 NPLPELKCLKDGTFPLPI-------GESV--TVTRDLEGTYLCRARSTQGEVTREVTVNVLSP 265 (265)
T ss_dssp ESCCEEEEEETTTEECCT-------TSCE--ECCGGGCEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred CCCCeEEEEECCcccCCC-------CcEE--EeehhhCeEEEEEEECCCCcEEEEEEEEEecC
Confidence 999999999999832222 2232 37789999999999999999999999998754
No 55
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.4e-31 Score=225.13 Aligned_cols=247 Identities=17% Similarity=0.194 Sum_probs=170.6
Q ss_pred EEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC------C--eeEEEEccCCcCCCeEEEEEEEcCCCC---eEEEE
Q psy14542 21 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN------S--DEVLVLDRVQREDAGMYQCHVSADDDS---AQMSA 89 (371)
Q Consensus 21 ~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~------~--~~~l~i~~~~~~d~G~Y~C~~~~~~~~---~~~~~ 89 (371)
+.+.+|++++|.|.+. +. +.|++++..+... . ..+|.|.+++.+|+|.|+|.+.|..|. ....+
T Consensus 10 ~~v~~G~~v~L~C~~~-~~----v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~~~ 84 (289)
T 3mjg_X 10 LVLNVSSTFVLTCSGS-AP----VVWERMSQEPPQEMAKAQDGTFSSVLTLTNLTGLDTGEYFCTHNDSRGLETDERKRL 84 (289)
T ss_dssp EECCTTCCEEEEEEES-SC----CEEEBTTBCCSEEEEECTTSCEEEEEEECSCCGGGCEEEEEECCC------CCCEEE
T ss_pred EEEeCCCcEEEEEecc-ce----EEEECCCCCcccceeccCCCceeEEEEEccCChhhCEEEEEEEcccCCCCcCcEEeE
Confidence 7899999999999654 32 9999998765221 2 478999999999999999999987765 34566
Q ss_pred EEEEecce-eeEecCCc---eeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeC
Q psy14542 90 QVILGGEL-VEIASSNQ---VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIED 165 (371)
Q Consensus 90 ~l~v~~~~-~~~~~~~~---~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~ 165 (371)
.|.|.... +.+...+. ..+.+|+.+.|.|.+. .+. +.++|++.+......... +
T Consensus 85 ~v~v~~p~~~~~~~~~~~~~~~v~~G~~v~l~C~~~-~p~-~~v~w~~~~~~~~~~~~~--------------------~ 142 (289)
T 3mjg_X 85 YIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVT-DPQ-LVVTLHEKKGDVALPVPY--------------------D 142 (289)
T ss_dssp EEECCCTTCCBCCCCHHHHEEEESSCCCEEECCCBS-CTT-SCEEEEESSCCSCCCCCE--------------------E
T ss_pred EEEEECCCcCcccCCCCcceEEeecCCeEEEEeEcC-CCC-ceEEEEeCCCCCccceee--------------------c
Confidence 66665221 22222222 3458999999999998 444 688888865211111000 0
Q ss_pred CceeEeccceEEEEEeecCCccceeEEEeeccccceee-eeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEE
Q psy14542 166 GKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASL-LSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPC 244 (371)
Q Consensus 166 ~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~-~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C 244 (371)
.. ..+. ...| .|.|+|.+.+. .+... ... .+.|... .+|.+...+.... +..|+.+.|.|
T Consensus 143 ~~------~~~~----~~~d-~G~Y~C~a~n~-~~~~~s~~~---~l~v~~~---~~p~i~~~~~~~~-v~~G~~v~L~C 203 (289)
T 3mjg_X 143 HQ------RGFS----GIFE-DRSYICKTTIG-DREVDSDAY---YVYRLQV---SSINVSVNAVQTV-VRQGENITLMC 203 (289)
T ss_dssp TT------TEEE----ECCC-SSEEEEEEEET-TEEEECCCE---EEEECCC---CCCCCEEEESCSE-EETTSCEEEEE
T ss_pred CC------cCee----eecc-CcEEEEEEEeC-CceeeeeeE---EEEecCC---CCCCcEEeCCcce-eEcCCCEEEEE
Confidence 00 1111 3568 99999999876 33322 222 4555422 3566666666555 89999999999
Q ss_pred EeecCCCCceEEEeCCcccccCCce---------EEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEecCcc
Q psy14542 245 SAQGNPLPTIKWYKQDSPVEESDRI---------QRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKY 313 (371)
Q Consensus 245 ~~~~~p~~~v~W~~~~~~~~~~~~~---------~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~ 313 (371)
.+.+.|.+.+.|++++......... ....+.|.|.++..+|+|.|+|.|.|..|....++.|.|...+.
T Consensus 204 ~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~v~~~~~ 281 (289)
T 3mjg_X 204 IVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINITVVES 281 (289)
T ss_dssp EEESCSSBEEEEECTTSSSSCCCCCEEEESCTTTTEEEEEEEESSCCSSCCEEEEEEEEETTTTEEEEEEEEEEEEC-
T ss_pred EECCCCCcceEEEcCCccCCCcccccccccCCcceEEEEEEEEcccChhhCcEEEEEeecCCCCceeEEEEEEEEEec
Confidence 9999999999999877654332111 12336899999999999999999999999999999999988776
No 56
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R
Probab=99.98 E-value=3.7e-32 Score=259.07 Aligned_cols=300 Identities=19% Similarity=0.255 Sum_probs=113.4
Q ss_pred EEEecc--CcEEEEEEecCCCCCCeeEEEeC--CEEEeeC-------CeeEEEEccCCcCCCeEEEEEEEcCCCCeEE-E
Q psy14542 21 VVVDVG--HRIELHCRVSPKRLSSAKAWLKD--GLVLRRN-------SDEVLVLDRVQREDAGMYQCHVSADDDSAQM-S 88 (371)
Q Consensus 21 ~~~~~G--~~v~l~C~~~~~~~~~~~~W~~~--~~~~~~~-------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~-~ 88 (371)
+.+.+| ++++|.|.+. + |...+.|+++ +..+... ....|.|.+++.+|+|.|+|.+.+....... .
T Consensus 136 ~~v~~G~~~~v~L~C~~~-~-p~~~v~w~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~ 213 (772)
T 3v2a_R 136 VYITENKNKTVVIPCLGS-I-SNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQSIM 213 (772)
T ss_dssp EEEESSCCCEEEECCCCS-C-SSCCEEEEEETTTEEECCCSSSCEEETTTEEEEEGGGTTTCSEEEEEEEETTEEEECCE
T ss_pred EEEecCCCCeEEEEccCC-C-CCcEEEEEecCCCccccCCCceeecCCCCCeEecCCChhhCeEEEEEEEECCceEEEEE
Confidence 678889 8999999654 3 6688999997 6655432 4567999999999999999999975432221 2
Q ss_pred EEEEEec-ceeeEecCC--ceeeecCCcEEEEEEecCCC-CCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEe
Q psy14542 89 AQVILGG-ELVEIASSN--QVVVDVGHRIELHCRVSPKR-LSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIE 164 (371)
Q Consensus 89 ~~l~v~~-~~~~~~~~~--~~~~~~g~~v~l~C~~~~~~-~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~ 164 (371)
+.+.+.. ..+.+...+ ...+.+|+.++|.|.+.+.+ +...+.|++++..+........... . .
T Consensus 214 ~~~~v~~~~~~~v~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~--~-~---------- 280 (772)
T 3v2a_R 214 YIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLK--T-Q---------- 280 (772)
T ss_dssp EEEEEECCCEEEEEEECCSCEEEETTCCEEEEEEEEECTTCCCEEEEECC--------CEEEEC----------------
T ss_pred EEEEEecCccceeeeCCCCceEEecCCcEEEEEEEecCCCCceeEEEecCCccCCCceeeecccc--c-c----------
Confidence 3333331 233333333 23568999999999998642 2278999999887554321100000 0 0
Q ss_pred CCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeee---eeeeeeecCCeEE
Q psy14542 165 DGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEK---HRILNVKKDESVI 241 (371)
Q Consensus 165 ~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~---~~~~~~~~g~~~~ 241 (371)
.+.........|.|.+++.+| +|.|+|.+.+. .+...... .|.|. .+|.+.... .... +..|+.+.
T Consensus 281 ~~~~~~~~~~~L~i~~v~~~d-~G~Y~C~~~~~-~~~~~~~~---~l~V~-----~~p~~~~~~~~~~~~~-v~~G~~v~ 349 (772)
T 3v2a_R 281 SGSEMKKFLSTLTIDGVTRSD-QGLYTCAASSG-LMTKKNST---FVRVH-----EKPFVAFGSGMESLVE-ATVGERVR 349 (772)
T ss_dssp --CCCEEEEEEEEESSCCSTT-CSEEEEEEECS-SCEEEEEE---EEEEE-----CCCC---------------------
T ss_pred ccccceEEEEEEEECcCCcCC-CeEEEEEEEcC-CcceeEEE---EEEEe-----CCCeeEeccCCCCcEE-EcCCCcEE
Confidence 000111123689999999999 99999999988 66655555 77777 455444322 2333 88999999
Q ss_pred EEEEeecCCCCceEEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCCCc--eeEEEEEEecCcccccccc
Q psy14542 242 LPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQD--KMQLFIQYAHGKYHMLSSG 319 (371)
Q Consensus 242 l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~--~~~~~l~v~~~p~~~~~~~ 319 (371)
|.|.+.++|.+.+.|+++|..+....++. ..+.|.|.++..+|+|.|+|.|.|..|.. +..+.|.|..+|.
T Consensus 350 l~C~~~~~p~~~v~W~~~g~~l~~~~~~~-~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~~~l~v~~~P~------ 422 (772)
T 3v2a_R 350 IPAKYLGYPPPEIKWYKNGIPLESNHTIK-AGHVLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVYVPPQ------ 422 (772)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEEeeeCCCeEEEEECCEeCCCCceEc-cceeEEEecCChhcCceEEEEEEECCcCeEEEEEEEEEEecCCc------
Confidence 99999999999999999998887644333 34789999999999999999999998865 5567777887777
Q ss_pred eEEEEee--eeccccccccccccccceeeeeecCCeEEEeeeeecCCCCc-cccC
Q psy14542 320 ELIIHQV--DEKNKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPT-IKYR 371 (371)
Q Consensus 320 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~-i~W~ 371 (371)
+... ..|.. .+.+|+.++|.|.+.|.|+|. |+|+
T Consensus 423 ---~~~~~~~~~~~---------------~~~~g~~~~l~C~~~g~p~p~~v~W~ 459 (772)
T 3v2a_R 423 ---IGEKSLISPVD---------------SYQYGTTQTLTCTVYAIPPPHHIHWY 459 (772)
T ss_dssp -------------------------------------------------------
T ss_pred ---ccccccCCCcc---------------ccCCCCcEEEEeEeccCCCCcEEEEE
Confidence 3311 11111 367899999999999999996 9996
No 57
>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2
Probab=99.98 E-value=1.7e-30 Score=231.69 Aligned_cols=302 Identities=16% Similarity=0.239 Sum_probs=191.1
Q ss_pred EEEeccCcEEEEEEecCCC-CCCeeEEEeC--CEEEe----e--------------C----------CeeEEEEccCCcC
Q psy14542 21 VVVDVGHRIELHCRVSPKR-LSSAKAWLKD--GLVLR----R--------------N----------SDEVLVLDRVQRE 69 (371)
Q Consensus 21 ~~~~~G~~v~l~C~~~~~~-~~~~~~W~~~--~~~~~----~--------------~----------~~~~l~i~~~~~~ 69 (371)
+.+.+|++++|.|.+.... +...+.|+|+ +..+. . . ...+|.|.+++.+
T Consensus 10 ~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~ 89 (444)
T 1igt_B 10 GLVQPGGSLKLSCATSGFTFSDYYMYWVRQTPEKRLEWVAYISNGGGSTYYPDTVKGRFTISRDNAKNTLYLQMSRLKSE 89 (444)
T ss_dssp CEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred eEEcCCCCEEEEEEcCCCccCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEeCCCCeEEEEECCCCHH
Confidence 6899999999999765432 2567999984 22110 0 0 2468999999999
Q ss_pred CCeEEEEEEEcCCCCe---EEEEEEEEec---ceeeEe-cCCceeeecCCcEEEEEEecCC-CCCceEEEeeCCEEeeeC
Q psy14542 70 DAGMYQCHVSADDDSA---QMSAQVILGG---ELVEIA-SSNQVVVDVGHRIELHCRVSPK-RLSSAKAWLKDGLVLRRN 141 (371)
Q Consensus 70 d~G~Y~C~~~~~~~~~---~~~~~l~v~~---~~~~~~-~~~~~~~~~g~~v~l~C~~~~~-~~~~~v~W~~~~~~~~~~ 141 (371)
|+|.|+|.+.+..+.. ...+.|.|.. .+|.+. ..+...+.+|+.++|.|.+.+. |.+..+.|++++..+...
T Consensus 90 D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~ 169 (444)
T 1igt_B 90 DTAMYYCARHGGYYAMDYWGQGTTVTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVH 169 (444)
T ss_dssp GCEEEEEEEECSSSCEEEEBCCEEEEECSCCCBCCEEEEECCCSSCCCSSCEEEEEEEEEEBSSCCEEEEGGGTBCTTEE
T ss_pred HCEEEEEEEecCCcccccccCcEEEEecCCCCCCCceeEecccccCCCCCcEEEEEEEcceeCCCcEEEEecCCCCCCeE
Confidence 9999999999865441 2235677762 123332 2333334789999999999885 543499999988753110
Q ss_pred CeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeec------
Q psy14542 142 SDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTE------ 215 (371)
Q Consensus 142 ~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~------ 215 (371)
.. .... ..|.| .. .+.|.|.++..+| |.|+|.+.|. .+...... .+.+..
T Consensus 170 ~~-----~~~~--~~~~~---------~~--~s~L~i~~~~~~d--g~Y~C~a~n~-~~~~~~~~---~i~~~~~~~~~~ 225 (444)
T 1igt_B 170 TF-----PAVL--QSDLY---------TL--SSSVTVTSSTWPS--QSITCNVAHP-ASSTKVDK---KIEPRGPTIKPC 225 (444)
T ss_dssp EC-----CCEE--ETTEE---------EE--EEEEEECSTTTTT--SCCEEEEEET-TTTEEEEE---ECCCCCCSCCCC
T ss_pred ec-----Cccc--cCCcE---------EE--EEEEEEchhhcCC--CeEEEEEEeC-CCCcceEE---EeccCCCCcccC
Confidence 00 0000 01222 22 2568888877765 9999999998 55433332 332210
Q ss_pred -------chhccccceeeeeeeeee-eecCCeEEEEEEeecCC----CCceEEEeCCcccccCCce---E------Eecc
Q psy14542 216 -------NKRLLSAAKMFEKHRILN-VKKDESVILPCSAQGNP----LPTIKWYKQDSPVEESDRI---Q------RIGS 274 (371)
Q Consensus 216 -------~~~~~~p~~~~~~~~~~~-~~~g~~~~l~C~~~~~p----~~~v~W~~~~~~~~~~~~~---~------~~~~ 274 (371)
.....+|.+...+..... +..|+.+.|.|.+.|.+ .+.+.|++++..+...... . ...+
T Consensus 226 ~~~~~~~~~~~~~p~v~~~~p~~~~~~~~G~~~~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (444)
T 1igt_B 226 PPCKCPAPNLLGGPSVFIFPPKIKDVLMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVVS 305 (444)
T ss_dssp CCCSCCCSCCCCCCEEEEECCCHHHHHCTTSCCEEEEEEEEECTTCCCCEEEEEETTEECSSTTCBCCEEECSSSEEEEE
T ss_pred CccccCCcccCCCceEEecCCchhheeecCCCcEEEEEEeecccCCCCeEEEEEECCccccCcccccceeCCCCcEEEEE
Confidence 000124444333322221 47899999999999874 3689999999876543211 1 1235
Q ss_pred eEEEeccCCCCCeEEEEEEEcCCCCceeEEEE----EEecCcccccccceEEEEeeeeccccccccccccccceeeeeec
Q psy14542 275 SLSISHVEESDSGVWNCVANNSEGQDKMQLFI----QYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKK 350 (371)
Q Consensus 275 ~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l----~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (371)
.|.|.++..+|+|.|+|.|.|..|.......+ .+..+|. +. +..+... .+..
T Consensus 306 ~L~I~~v~~~d~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~---------v~-~~~~~~~--------------~~~~ 361 (444)
T 1igt_B 306 ALPIQHQDWMSGKEFKCKVNNKDLPAPIERTISKPKGSVRAPQ---------VY-VLPPPEE--------------EMTK 361 (444)
T ss_dssp EEECCHHHHHTTCEEEEEEECTTCSSCEEEEEECCCCCCBCCE---------EE-EECCCGG--------------GTTS
T ss_pred EEEEcHHHhccCCcEEEEEEcCCCCCceEEEEeccCCCCCCCE---------EE-EeCCChH--------------HccC
Confidence 79999999999999999999999876433333 3344555 44 2222111 2334
Q ss_pred CCeEEEeeeeecC-CCC-ccccC
Q psy14542 351 DESVILPCSAQGN-PLP-TIKYR 371 (371)
Q Consensus 351 g~~~~l~C~~~g~-p~p-~i~W~ 371 (371)
| .++|.|.+.|. |+| .|+|+
T Consensus 362 ~-~~~L~C~~~g~~P~~~~v~W~ 383 (444)
T 1igt_B 362 K-QVTLTCMVTDFMPEDIYVEWT 383 (444)
T ss_dssp S-EEEEEEEEEEEBSSCCEEEEE
T ss_pred C-eEEEEEEEEeeeCCCCEEEEE
Confidence 5 59999999995 555 89995
No 58
>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A
Probab=99.97 E-value=6e-30 Score=229.97 Aligned_cols=309 Identities=14% Similarity=0.169 Sum_probs=193.4
Q ss_pred EEEeCCCcEEEeccCcEEEEEEecCCC-CCCeeEEEeCC--E---EEe---------------eC----------CeeEE
Q psy14542 13 IEMSPSGQVVVDVGHRIELHCRVSPKR-LSSAKAWLKDG--L---VLR---------------RN----------SDEVL 61 (371)
Q Consensus 13 ~~~~p~~~~~~~~G~~v~l~C~~~~~~-~~~~~~W~~~~--~---~~~---------------~~----------~~~~l 61 (371)
....|.. +.+.+|++++|.|...... +...+.|||.. . .+. .. ...+|
T Consensus 4 ~~~~p~~-~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L 82 (475)
T 1iga_A 4 LLEQSGA-EVKKPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYM 82 (475)
T ss_pred eeccCCc-EEEeCCCCEEEEEEecCCCCCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEcCCCCeEEE
Confidence 3344555 8899999999999765331 25679999842 1 110 00 23589
Q ss_pred EEccCCcCCCeEEEEEEEcCCCC------eEEEEEEEEec---ceeeEecCCceeeecCCcEEEEEEecCCCC--CceEE
Q psy14542 62 VLDRVQREDAGMYQCHVSADDDS------AQMSAQVILGG---ELVEIASSNQVVVDVGHRIELHCRVSPKRL--SSAKA 130 (371)
Q Consensus 62 ~i~~~~~~d~G~Y~C~~~~~~~~------~~~~~~l~v~~---~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~--~~~v~ 130 (371)
.|.+++.+|+|.|.|.+.+..+. ....+.|.|.. .+|.+...+.....+|+.++|.|.+.+.++ +..+.
T Consensus 83 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~g~~v~L~C~~~g~~P~~p~~v~ 162 (475)
T 1iga_A 83 GLSSLRPEDTAVYYCARDPYGGGKSEFDYWGQGTLVTVSSASPTSPKVFPLSLCSTQPDGNVVIACLVQGFFPQEPLSVT 162 (475)
T ss_pred EECCCChhhCEEEEEEEeccCCCccceeeecCceEEEeccCCCcCCeEEecCccccCCCCeEEEEEEEeeecCCCceEEE
Confidence 99999999999999999987542 12345666652 234443332222368999999999998744 24999
Q ss_pred EeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeeeccce
Q psy14542 131 WLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGR 210 (371)
Q Consensus 131 W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~ 210 (371)
|++++...... ..........| .+... +.|.|..+...| .|.|+|.+.|. .+. .... .
T Consensus 163 W~~~~~~~~~~-----~~~~~~~~~~g---------~~~~~--s~L~i~~~~~~d-~g~Y~C~a~n~-~~~-~~~~---~ 220 (475)
T 1iga_A 163 WSESGQGVTAR-----NFPPSQDASGD---------LYTTS--SQLTLPATQCLA-GKSVTCHVKHY-TNP-SQDV---T 220 (475)
T ss_pred EcCCCcccceE-----eCCceecCCCC---------cEEEE--EEEEechhHcCC-CceEEEEEEEC-CCC-ceee---e
Confidence 99987432110 00000001222 22222 468888888899 99999999998 442 1122 2
Q ss_pred eeeecch---------------hccccceeee-eeeeeeeecCCeEEEEEEeecCCC---CceEEEeCCcccccCCc---
Q psy14542 211 LSLTENK---------------RLLSAAKMFE-KHRILNVKKDESVILPCSAQGNPL---PTIKWYKQDSPVEESDR--- 268 (371)
Q Consensus 211 l~v~~~~---------------~~~~p~~~~~-~~~~~~~~~g~~~~l~C~~~~~p~---~~v~W~~~~~~~~~~~~--- 268 (371)
+.+.++. ...+|.+... +.... +..|+.+.|.|.+.|.++ +.+.| ++..+.....
T Consensus 221 v~l~V~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~-~~~G~~v~L~C~~~g~~p~~~~~i~W--~~~~~~~~~~~~~ 297 (475)
T 1iga_A 221 VPCPVPSTPPTPSPSTPPTPSPSCCHPRLSLHRPALED-LLLGSEANLTCTLTGLRDASGVTFTW--TPSSGKSAVQGPP 297 (475)
T ss_pred EecccccCcccccccccccCCCCCCCcEEEEcCCChHH-hccCCceEEEEEEEcccCCCceEEEE--CCCCcCCccccCc
Confidence 3321100 0013333222 22222 588999999999998754 68999 4443322110
Q ss_pred ------eEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEE---ecCcccccccceEEEEeeeeccccccccccc
Q psy14542 269 ------IQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQY---AHGKYHMLSSGELIIHQVDEKNKRLLSAAKM 339 (371)
Q Consensus 269 ------~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v---~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (371)
.....+.|.|.++..+|+|.|+|.|.|..|.......|.+ ..+|. +. +..+..
T Consensus 298 ~~~~~g~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~P~---------v~-~~~~~~-------- 359 (475)
T 1iga_A 298 ERDLCGCYSVSSVLPGCAEPWNHGKTFTCTAAYPESKTPLTATLSKSGNTFRPE---------VH-LLPPPS-------- 359 (475)
T ss_pred eECCCCCEEEEEEEEEchHHhccCCcEEEEEEcCCCCCceEEEeecCCCCCCCe---------EE-EECCCh--------
Confidence 0113457999999999999999999999998655555533 34555 43 222211
Q ss_pred cccceeeeeecCCeEEEeeeeecCCC--CccccC
Q psy14542 340 FEKHRILNVKKDESVILPCSAQGNPL--PTIKYR 371 (371)
Q Consensus 340 ~~~~~~~~~~~g~~~~l~C~~~g~p~--p~i~W~ 371 (371)
..+.+|+.+.|.|.+.|++| +.|+|+
T Consensus 360 ------~~v~~g~~~~L~C~~~g~~P~~~~v~W~ 387 (475)
T 1iga_A 360 ------EELALNELVTLTCLARGFSPKDVLVRWL 387 (475)
T ss_pred ------HHhccCCceEEEEEEeeeECCCCEEEEE
Confidence 03568999999999999744 489996
No 59
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Probab=99.97 E-value=9.8e-30 Score=213.23 Aligned_cols=219 Identities=20% Similarity=0.332 Sum_probs=172.0
Q ss_pred ceeeEecCCce-eeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccc
Q psy14542 96 ELVEIASSNQV-VVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSG 174 (371)
Q Consensus 96 ~~~~~~~~~~~-~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~ 174 (371)
.+|.+...+.. .+.+|+.++|.|.+.+.+. +.+.|++++..+.....+.+... . ...
T Consensus 4 ~pP~~~~~p~~~~~~~G~~v~l~C~~~g~p~-~~v~W~~~~~~~~~~~~~~~~~~---------------~------~~~ 61 (284)
T 2rik_A 4 APPFFDLKPVSVDLALGESGTFKCHVTGTAP-IKITWAKDNREIRPGGNYKMTLV---------------E------NTA 61 (284)
T ss_dssp CCCEEEECCCCEEEETTCCEEEEEEEESSSC-CEEEEEETTEECCSSSSEEEEEE---------------T------TEE
T ss_pred CCCEEEccccceEecCCCcEEEEEEEEcCCC-CEEEEEECCEECcCCCcEEEEEc---------------C------CEE
Confidence 35556555544 4489999999999998876 89999999998765433221110 0 126
Q ss_pred eEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecCCCCce
Q psy14542 175 ELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTI 254 (371)
Q Consensus 175 ~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v 254 (371)
.|.|.+++.+| .|.|+|.+.+. .+...... .|.|. .+|.+.........+..|+.+.|.|.+.+.|.+.+
T Consensus 62 ~L~i~~v~~~d-~G~Y~C~~~n~-~g~~~~~~---~l~V~-----~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~v 131 (284)
T 2rik_A 62 TLTVLKVTKGD-AGQYTCYASNV-AGKDSCSA---QLGVQ-----EPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKV 131 (284)
T ss_dssp EEEESSCCGGG-CEEEEEEEEET-TEEEEEEE---EEEEE-----CCCEEEECCCSEEEEETTCCEEEEEEEESSSCCEE
T ss_pred EEEEecCCccc-CEEEEEEEEEC-CceEEEEE---EEEcc-----CCCcccccCCCceEecCCceEEEEEEEeeeCCCEE
Confidence 79999999999 99999999998 67666666 78887 56665544433333889999999999999999999
Q ss_pred EEEeCCcccccCCceEE----ecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEecCcccccccceEEEEeeeecc
Q psy14542 255 KWYKQDSPVEESDRIQR----IGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKN 330 (371)
Q Consensus 255 ~W~~~~~~~~~~~~~~~----~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~ 330 (371)
.|++++..+....++.. ....|.|.++..+|+|.|+|.|.|..|.....+.|.|..+|. +. ..|
T Consensus 132 ~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~---------~~--~~~- 199 (284)
T 2rik_A 132 LWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPV---------FR--KKP- 199 (284)
T ss_dssp EEEETTEECCCSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEECCCB---------CC--SCC-
T ss_pred EEEECCEECcCCCcEEEEEcCCEEEEEECCCCcccCEEEEEEEEcCCCceeEEEEEEEecCCc---------ce--eCC-
Confidence 99999998877765542 235799999999999999999999999999999999998887 33 111
Q ss_pred ccccccccccccceeeeeecCCeEEEeeeeecCCCCccccC
Q psy14542 331 KRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKYR 371 (371)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~ 371 (371)
....+.+|+.+.|.|.+.|+|+|.++|+
T Consensus 200 -------------~~~~~~~g~~v~l~C~~~g~p~~~v~W~ 227 (284)
T 2rik_A 200 -------------HPVETLKGADVHLECELQGTPPFQVSWH 227 (284)
T ss_dssp -------------CCEEECTTCCEEEEEECBSSSCCEEEEE
T ss_pred -------------CcceecCCCeEEEEEEEEecCCCEEEEE
Confidence 1226779999999999999999999995
No 60
>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*
Probab=99.97 E-value=4.8e-30 Score=229.59 Aligned_cols=306 Identities=14% Similarity=0.233 Sum_probs=185.9
Q ss_pred CCCcEEEeccCcEEEEEEecCCC-CCCeeEEEeC--CE---EEe---------------eC----------CeeEEEEcc
Q psy14542 17 PSGQVVVDVGHRIELHCRVSPKR-LSSAKAWLKD--GL---VLR---------------RN----------SDEVLVLDR 65 (371)
Q Consensus 17 p~~~~~~~~G~~v~l~C~~~~~~-~~~~~~W~~~--~~---~~~---------------~~----------~~~~l~i~~ 65 (371)
|.. +.+.+|++++|.|.+.... ....+.|+|+ +. .+. .. ...+|.|.+
T Consensus 7 ~~~-~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~ 85 (457)
T 1hzh_H 7 SGA-EVKKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRS 85 (457)
T ss_dssp CCC-EEECTTCCEEECEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECS
T ss_pred CCc-eEEcCCCCEEEEEEecCccccCcEEEEEEeCCCCCcEEEEEEecCCCceecCccccCceEEEEeCCCCEEEEEECC
Confidence 444 7899999999999765331 2567999983 21 110 00 235899999
Q ss_pred CCcCCCeEEEEEEEcCCC------------CeEEEEEEEEec---ceeeEe-cCCceeeecCCcEEEEEEecCCCC-Cce
Q psy14542 66 VQREDAGMYQCHVSADDD------------SAQMSAQVILGG---ELVEIA-SSNQVVVDVGHRIELHCRVSPKRL-SSA 128 (371)
Q Consensus 66 ~~~~d~G~Y~C~~~~~~~------------~~~~~~~l~v~~---~~~~~~-~~~~~~~~~g~~v~l~C~~~~~~~-~~~ 128 (371)
++.+|+|.|+|.+.+..+ .......|.|.. .+|.+. ..+...+.+|+.++|.|.+.+..+ ++.
T Consensus 86 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~ 165 (457)
T 1hzh_H 86 LRSADTAVYYCARVGPYSWDDSPQDNYYMDVWGKGTTVIVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVT 165 (457)
T ss_dssp CCGGGCEEEEEEECCCCCSSCCTTTTCSCCBCCCCEEEEECSCCCBCCEEEEECCCSCCCTTCCEEEEEEEESBBSCCCE
T ss_pred CCcccCEEEEEEEecCCccccccccccccceECCcEEEEecCCCCCCCeEEecCccccccCCCcEEEEEEEeEEeCCCeE
Confidence 999999999999998754 122345666653 133333 233333478999999999988733 379
Q ss_pred EEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeeecc
Q psy14542 129 KAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNR 208 (371)
Q Consensus 129 v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~ 208 (371)
+.|++++..+.... ..... ...| .+.. .+.|.|.++..+| |.|+|.+.|. .+......
T Consensus 166 v~W~k~~~~~~~~~-~~~~~-----~~~~---------~~~~--~s~L~i~~~~~~d--G~Y~C~a~n~-~~~~~~~~-- 223 (457)
T 1hzh_H 166 VSWNSGALTSGVHT-FPAVL-----QSSG---------LYSL--SSVVTVPSSSLGT--QTYICNVNHK-PSNTKVDK-- 223 (457)
T ss_dssp EEETTTTBCTTEEE-EEEEE-----CTTS---------CEEE--EEEEEECSGGGGT--SCCEEEEEEG-GGTEEEEE--
T ss_pred EEEEeCCEeccceE-cCceE-----CCCC---------CEEE--EEEEEecccccCC--ceEEEEEEeC-CCCcceeE--
Confidence 99999986432110 00000 1112 2222 1578888887755 9999999997 54433322
Q ss_pred ceeeeecch------------hccccceeeeeeeee-eeecCCeEEEEEEeecCCCC----ceEEEeCCcccccCCc---
Q psy14542 209 GRLSLTENK------------RLLSAAKMFEKHRIL-NVKKDESVILPCSAQGNPLP----TIKWYKQDSPVEESDR--- 268 (371)
Q Consensus 209 ~~l~v~~~~------------~~~~p~~~~~~~~~~-~~~~g~~~~l~C~~~~~p~~----~v~W~~~~~~~~~~~~--- 268 (371)
.+.+.... ...+|.+...+.... .+..|+.+.|.|.+.|.|++ .+.|++++..+.....
T Consensus 224 -~v~~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~~G~~v~L~C~~~g~~p~p~~~~i~W~k~~~~~~~~~~~~~ 302 (457)
T 1hzh_H 224 -KAEPKSCDKTHTCPPCPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPR 302 (457)
T ss_dssp -ECCCCCSCSSCSCCSCCCCCCSSSCEEEEECCCHHHHHCTTSCCCEEEEEECCCTTCCCCEEEEEETTEEECCCEEEEE
T ss_pred -EecccCCCcccccCCCCCccccCCceEEeECcCchhhcccCCceEEEEEEEcccCCCCceEEEEEeCCccccccccccc
Confidence 33322100 001344322221111 15679999999999987553 8999999987654321
Q ss_pred eEEecceEEEec---cCCCC---CeEEEEEEEcCCCCceeEEEEE----EecCcccccccceEEEEeeeecccccccccc
Q psy14542 269 IQRIGSSLSISH---VEESD---SGVWNCVANNSEGQDKMQLFIQ----YAHGKYHMLSSGELIIHQVDEKNKRLLSAAK 338 (371)
Q Consensus 269 ~~~~~~~l~i~~---~~~~d---~G~Y~C~a~n~~g~~~~~~~l~----v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (371)
....++.+.+.. +...| +|.|+|.|.|..+.......+. +..+|. +. +..+...
T Consensus 303 ~~~~~g~~~~~~~l~i~~~d~~d~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~---------v~-~~~~~~~------ 366 (457)
T 1hzh_H 303 EEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQ---------VY-TLPPSRD------ 366 (457)
T ss_dssp EECTTSCEEEEEEECCCHHHHHHTCCEEEEEECTTSSSCEEEEECCCCCCCBCCE---------EE-EECCCGG------
T ss_pred eecCCCcEEEEEEEEECHHHccCCCcEEEEEeCCCCCCcceEEEEcccCCCCCCe---------EE-EECCCcc------
Confidence 112234444442 23444 9999999998776654444443 344555 44 2222211
Q ss_pred ccccceeeeeecCCeEEEeeeeecCCCC--ccccC
Q psy14542 339 MFEKHRILNVKKDESVILPCSAQGNPLP--TIKYR 371 (371)
Q Consensus 339 ~~~~~~~~~~~~g~~~~l~C~~~g~p~p--~i~W~ 371 (371)
.+..|+ ++|.|.+.|+|+| .|+|+
T Consensus 367 --------~~~~~~-~~l~C~~~g~~p~~~~v~W~ 392 (457)
T 1hzh_H 367 --------ELTKNQ-VSLTCLVKGFYPSDIAVEWE 392 (457)
T ss_dssp --------GGGSSE-EEEEEEEEEEBSSCCEEEEE
T ss_pred --------ccCCCc-EEEEEEEEeEECCCCEEEEE
Confidence 233555 9999999997654 89995
No 61
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E
Probab=99.97 E-value=1.2e-29 Score=220.23 Aligned_cols=250 Identities=14% Similarity=0.177 Sum_probs=173.2
Q ss_pred EEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeCCeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEEEEE
Q psy14542 13 IEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVI 92 (371)
Q Consensus 13 ~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~ 92 (371)
+.+.|.. .+.+|++++|.|.+ .+.|.+.+.|++++..+.. ....|.|.+++.+|+|.|+|.+.+..+.....+.|.
T Consensus 100 ~~~~~~~--~v~~G~~v~l~C~~-~~~p~~~v~W~~~~~~~~~-~~~~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~l~ 175 (363)
T 1wio_A 100 LTANSDT--HLLQGQSLTLTLES-PPGSSPSVQCRSPRGKNIQ-GGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIV 175 (363)
T ss_dssp EEESSCS--SEESBSCEEEEEEC-CTTCCCCEEEECSSSCEEE-ESSEEEECSBCGGGCEECEEEEEETTEEEEECCEEC
T ss_pred CCCCCce--EEecCCCEEEEEEc-CCCCCCeEEEEcCCCcccc-cceEEEEeeCChhcCCEEEEEEecCCCeEEEEEEEE
Confidence 4445543 67899999999955 4478889999998766544 667899999999999999999998766556666666
Q ss_pred EecceeeEecCCceeeecCCcEEEEEEecC-----CCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEE--eC
Q psy14542 93 LGGELVEIASSNQVVVDVGHRIELHCRVSP-----KRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHI--ED 165 (371)
Q Consensus 93 v~~~~~~~~~~~~~~~~~g~~v~l~C~~~~-----~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~--~~ 165 (371)
|. .++... ....+.+|+.+.|.|.+.+ .|. +.+.|++++..+.... ..+... .+.+.... .+
T Consensus 176 v~-~~p~~~--~~~~~~~G~~v~l~C~~~~~~~~~~P~-p~i~W~~~g~~~~~~~-~~~~~~------~~~~~~~~~~~~ 244 (363)
T 1wio_A 176 VL-AFQKAS--SIVYKKEGEQVEFSFPLAFTVEKLTGS-GELWWQAERASSSKSW-ITFDLK------NKEVSVKRVTQD 244 (363)
T ss_dssp EE-CCSCSE--EEEEEETBCCEEEECCCCCCCCSSCEE-EEEEEEESSCCCCCCE-EEEEEC------SSCEEEEEEECS
T ss_pred Ee-cCCCCC--CceEEecCCEEEEEEEEecccccCCCc-eeEEEecCCCCccceE-EEEEec------CCeeeccccccc
Confidence 66 222211 2233478999999998877 445 8999999988765420 000000 00010000 00
Q ss_pred CceeEec--cceEEEEEeecCCccceeEEEeecccc-ceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEE
Q psy14542 166 GKYHMLS--SGELIIHQVDESDRYRSYQCRGVNKLT-GASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVIL 242 (371)
Q Consensus 166 ~~~~~~~--~~~l~i~~~~~~d~~g~y~C~~~~~~~-~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l 242 (371)
....... ...|.|.++..+| +|.|+|.+.|... |.....+ .|.|. ...|+.+.|
T Consensus 245 ~~~~~~~~~~~~L~i~~v~~~d-~G~Y~C~a~n~~~~g~~~~~~---~l~V~-------------------~v~g~~~~l 301 (363)
T 1wio_A 245 PKLQMGKKLPLHLTLPQALPQY-AGSGNLTLALEAKTGKLHQEV---NLVVM-------------------RATQLQKNL 301 (363)
T ss_dssp SCCBCCSSSSCEEEESSBCGGG-CEEEEEEECBTTTTCCEEEEE---EEEEE-------------------EECCCSSSE
T ss_pred hhhhcccCCceEEEEccCCcCc-CcEEEEEEEEhhhcCeEEEEE---eEEEE-------------------EecCCCeeE
Confidence 0000011 2489999999999 9999999998721 3333333 45444 112788999
Q ss_pred EEEeecCCCCc--eEEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEE
Q psy14542 243 PCSAQGNPLPT--IKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQY 308 (371)
Q Consensus 243 ~C~~~~~p~~~--v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 308 (371)
.|.+.+.|.|. +.|++++..+..+ +.|.|.++..+|+|.|+|.|.|. |....+..|.|
T Consensus 302 ~C~~~g~p~p~~~i~W~~~~~~~~~~-------~~l~i~~v~~~d~G~Y~C~a~~~-~~~~~~~~~~V 361 (363)
T 1wio_A 302 TCEVWGPTSPKLMLSLKLENKEAKVS-------KREKAVWVLNPEAGMWQCLLSDS-GQVLLESNIKV 361 (363)
T ss_dssp EEEEESSCCTTCCEEEECSSSSCSEE-------ESSSEEEESSCCSEEEEEEECSS-SSCCEEEEEEE
T ss_pred EEEEccccCCCccEEEEeCCCceeee-------eeeeeeeeccccceeEEEEEecC-CeEEEecceEe
Confidence 99999999888 9999999887643 45778999999999999999964 55555555555
No 62
>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1
Probab=99.97 E-value=6.7e-30 Score=227.61 Aligned_cols=280 Identities=15% Similarity=0.205 Sum_probs=183.1
Q ss_pred cceEEEeCCCcEEEeccCcEEEEEEecCCCCCC-eeEEEeCCEEEeeC----------------CeeEEEEccCCcCCCe
Q psy14542 10 SLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSS-AKAWLKDGLVLRRN----------------SDEVLVLDRVQREDAG 72 (371)
Q Consensus 10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~-~~~W~~~~~~~~~~----------------~~~~l~i~~~~~~d~G 72 (371)
+|.+.+.+.. ....+|+.+.|.|.+....|.+ .+.|+|+|..+... ....|.|.+++.+|+|
T Consensus 116 ~P~v~~~~~~-~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G 194 (438)
T 1qgc_4 116 APTVSIFPPS-SEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHN 194 (438)
T ss_dssp CCEEEEECCC-HHHHHTTEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEEEEECCCTTTCCEEEEEEEEEEHHHHHTCC
T ss_pred CCEEEecCCC-hhhccCCceEEEEEEccccCCCcEEEEEECCEEcCCCceeccccccCCCCcEEEEEEEEEeCcccCCCC
Confidence 5667665554 3445788999999766556766 89999999887542 1347999999999999
Q ss_pred EEEEEEEcCCCCeEEEEEEEEecceeeEecCCceeeecCCcEEEEEEecCCCC-CceEEEeeC--CEEeeeCCeeEEEEc
Q psy14542 73 MYQCHVSADDDSAQMSAQVILGGELVEIASSNQVVVDVGHRIELHCRVSPKRL-SSAKAWLKD--GLVLRRNSDEVLVLD 149 (371)
Q Consensus 73 ~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~-~~~v~W~~~--~~~~~~~~~~~~~~~ 149 (371)
.|+|.+.|..+.......+.+....+.+.......+.+|+.++|.|.+.+.+. .+.+.|+++ +..+... ..+.
T Consensus 195 ~Y~C~a~n~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~----~~~~ 270 (438)
T 1qgc_4 195 SYTCEATHKTSTSPIVKSFNRNECEVMLVESGGGLVKPGGSLKLSCTASGFIFNRCAMSWVRQTPEKRLEWV----ATIS 270 (438)
T ss_dssp EEEEEEEETTCSSCEEEEEETTC-CCEEEEECCEEECTTCCEEEEEEEESSCGGGSCEEEEEEETTTEEEEE----EEEC
T ss_pred eEEEEEEecccCCceecccccccceeEEecCCceEEecCCcEEEEEEEcccccCCcEEEEEECCCCCCcEEE----EEEe
Confidence 99999999877654444443321223333334445689999999999998872 279999996 4433210 0000
Q ss_pred c------cCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccc-----eeeeeeccceeeeecchh
Q psy14542 150 R------VQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTG-----ASLLSVNRGRLSLTENKR 218 (371)
Q Consensus 150 ~------~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~-----~~~~~~~~~~l~v~~~~~ 218 (371)
. ......+.|........ ....|.|.+++.+| +|.|+|.+.|. .+ ...... .+.|.....
T Consensus 271 ~~~~~~~~~~~~~~r~~~~~~~~~----~~~~L~I~~v~~~D-~G~Y~C~a~n~-~~~~~~~~~~~~~---~l~V~~~~~ 341 (438)
T 1qgc_4 271 SGGTYTYYPDSVKGRFTISRDNAK----NTLYLQMSSLRSAD-TAMYYCVRRED-GGDEGFAYWGQGT---VVTVSAAKT 341 (438)
T ss_dssp TTSCCEECCGGGTTTEEEEEETTT----TEEEEEECSCCGGG-CCEEEEEECCS-SSCCCCCSBCCCE---EEEECSSCC
T ss_pred ecCCceecCcccCCcEEEEeecCC----CeEEEEECCCChhh-CEEEEEEEEcc-CCCccceeeCCCE---EEEEecCCC
Confidence 0 00001122211111100 12479999999999 99999999984 22 111222 555553211
Q ss_pred ccccceeeeeeeeeeeecCCeEEEEEEeecC-CCC-ceEEEeCCcccccC--CceE-----EecceEEEeccCCCCCeEE
Q psy14542 219 LLSAAKMFEKHRILNVKKDESVILPCSAQGN-PLP-TIKWYKQDSPVEES--DRIQ-----RIGSSLSISHVEESDSGVW 289 (371)
Q Consensus 219 ~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~v~W~~~~~~~~~~--~~~~-----~~~~~l~i~~~~~~d~G~Y 289 (371)
.+|.+........ +..|+.++|.|.+.|. |.+ .+.|+++|..+... .... ...+.|.|.++..+| |.|
T Consensus 342 -~~P~v~~~~~~~~-~~~g~~v~L~C~~~g~~P~~~~v~W~~~g~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-g~Y 418 (438)
T 1qgc_4 342 -TPPSVYPLAPGSA-AAAASMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETV 418 (438)
T ss_dssp -BCCEEEEECCCGG-GCCSSEEEEEEEEESCBSSCCEEEEGGGTCCSSEEECCCEEETTEEEEEEEEEEEEEHHHH-SCC
T ss_pred -CCCeEEEcCcccc-cccCCcEEEEEEeccccCCCcEEEEecCCCCCceeecCccccCCcEEEEEEEEEehhhcCC-ceE
Confidence 3444444333334 6789999999999997 877 89999999876532 1111 112368999998889 999
Q ss_pred EEEEEcCCCCceeEEEE
Q psy14542 290 NCVANNSEGQDKMQLFI 306 (371)
Q Consensus 290 ~C~a~n~~g~~~~~~~l 306 (371)
+|.|.|..|.......|
T Consensus 419 ~C~a~n~~g~~~~~~~i 435 (438)
T 1qgc_4 419 TCNVAHPASSTKVDKKI 435 (438)
T ss_dssp EEEEEEGGGTEEEEEEC
T ss_pred EEEEEeCCCCcceeeec
Confidence 99999999987666554
No 63
>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2
Probab=99.97 E-value=1.1e-31 Score=238.67 Aligned_cols=302 Identities=12% Similarity=0.193 Sum_probs=189.2
Q ss_pred EEEeccCcEEEEEEecCCC-CCCeeEEEeC--CEE---Eee---------------C----------CeeEEEEccCCcC
Q psy14542 21 VVVDVGHRIELHCRVSPKR-LSSAKAWLKD--GLV---LRR---------------N----------SDEVLVLDRVQRE 69 (371)
Q Consensus 21 ~~~~~G~~v~l~C~~~~~~-~~~~~~W~~~--~~~---~~~---------------~----------~~~~l~i~~~~~~ 69 (371)
+.+.+|++++|.|.+.... +.+.+.|+|+ +.. +.. . ...+|.|.+++.+
T Consensus 9 ~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~ 88 (434)
T 1igy_B 9 ELARPGASVKMSCKASGYTFTTYTIHWIKQRPGQGLEWIGYINPSSVYTNYNQRFKDKATLTRDRSSNTANIHLSSLTSD 88 (434)
T ss_dssp CEECTBCCEEECCEECSSCGGGCCCEEEEECTTCCEEEEEECCSSSCCCCCCGGGTTTEECCBCGGGCBBCEEECSBCGG
T ss_pred eEecCCCCEEEEEEccCCcccCceEEEEEECCCCCCEEEEEEccCCCceecCccccccEEEEEECCCCEEEEEECCCChH
Confidence 7899999999999765431 3567999985 221 100 0 2347999999999
Q ss_pred CCeEEEEEEEcCCCCeEEEEEEEEec---ceeeEe-cCCceeeecCCcEEEEEEecCC-CCCceEEEeeCCEEeeeCCee
Q psy14542 70 DAGMYQCHVSADDDSAQMSAQVILGG---ELVEIA-SSNQVVVDVGHRIELHCRVSPK-RLSSAKAWLKDGLVLRRNSDE 144 (371)
Q Consensus 70 d~G~Y~C~~~~~~~~~~~~~~l~v~~---~~~~~~-~~~~~~~~~g~~v~l~C~~~~~-~~~~~v~W~~~~~~~~~~~~~ 144 (371)
|+|.|+|.+.+..+.......|.|.. .+|.+. ..+...+.+|+.++|.|.+.+. |.+..+.|++++..+...
T Consensus 89 D~G~Y~C~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~G~~v~L~C~~~g~~P~p~~v~W~k~~~~~~~~--- 165 (434)
T 1igy_B 89 DSAVYYCVREGEVPYWGQGTTVTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVH--- 165 (434)
T ss_dssp GCSEECCCCSSSSCCCCCCEECEECCSCCBCCCEEEECCCCCCCCTTEEEEEEEEEEEBSSCCEEEETTTTBCSSEE---
T ss_pred HCEEEEEEEEccccccCCceEEEEccCCCCCCeEEEcCCccccCCCCcEEEEEEEeeecCCCeEEEEeeCCcCCCeE---
Confidence 99999999988544334445677752 223333 2333334789999999999886 442499999988642110
Q ss_pred EEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecc-------h
Q psy14542 145 VLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTEN-------K 217 (371)
Q Consensus 145 ~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~-------~ 217 (371)
...... ..|.|. . .+.|.|.++..+| |.|+|.+.|. .+...... .+.+... .
T Consensus 166 --~~~~~~--~~~~~~---------~--~s~L~i~~~~~~d--g~Y~C~a~n~-~~~~~~~~---~~~~~~~~~~v~~~~ 224 (434)
T 1igy_B 166 --TFPAVL--QSDLYT---------L--SSSVTVPSSPRPS--ETVTCNVAHP-ASSTKVDK---KIVPRDCGCKPCICT 224 (434)
T ss_dssp --ECCCEE--CSSCEE---------E--EEEEEEETTTTTS--SCCEEEEECT-TTTCCEEE---ECCCCCCCCCCCCCC
T ss_pred --ecCcee--cCCcEE---------E--EEEEEEcchhcCC--CcEEEEEEeC-CCCcccee---eccCCCCCCccccCC
Confidence 000000 113222 2 1568888877765 9999999998 55432222 3322100 0
Q ss_pred hccccceeeeeeeee-eeecCCeEEEEEEeecCC----CCceEEEeCCcccccCCce---------EEecceEEEeccCC
Q psy14542 218 RLLSAAKMFEKHRIL-NVKKDESVILPCSAQGNP----LPTIKWYKQDSPVEESDRI---------QRIGSSLSISHVEE 283 (371)
Q Consensus 218 ~~~~p~~~~~~~~~~-~~~~g~~~~l~C~~~~~p----~~~v~W~~~~~~~~~~~~~---------~~~~~~l~i~~~~~ 283 (371)
....|.+...+.... .+..|+.+.|.|.+.|.+ .+.|.|++++..+...... ....+.|.|..+..
T Consensus 225 ~~~~p~v~~~~p~~~~~v~~G~~~~L~C~~~g~~p~P~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~ 304 (434)
T 1igy_B 225 VPEVSSVFIFPPKPKDTLLITVTPKVTCVVVDISKDDPEVQFSWFVDNVEVHTAQTQPREEQFNSTFRVVSALPIMHQDW 304 (434)
T ss_dssp CSSSCCEEEECCCHHHHHSTTSCCEEEEEECCCCSSCCCCCBCBBSSSCCBCCCSCCCCCCCCSSSCCCCCCEECCHHHH
T ss_pred CCcCcEEEEeCCChHHhcccCCCcEEEEEEeccccCCCCeEEEEEeCCcccCCcccCcceeCCCCcEEEEEEEEECHHHc
Confidence 000133322222111 167899999999999874 3589999999876432111 01235799999999
Q ss_pred CCCeEEEEEEEcCCCCcee--EEEE--EEecCcccccccceEEEEeeeeccccccccccccccceeeeeecCCeEEEeee
Q psy14542 284 SDSGVWNCVANNSEGQDKM--QLFI--QYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKDESVILPCS 359 (371)
Q Consensus 284 ~d~G~Y~C~a~n~~g~~~~--~~~l--~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~ 359 (371)
+|+|.|+|.|.|..|.... .+.+ .+..+|. +. +..+.. ....|+.++|.|.
T Consensus 305 ~d~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~---------v~-~~~~~~---------------~~~~~~~~~L~C~ 359 (434)
T 1igy_B 305 LNGKEFKCRVNSAAFPAPIEKTISKTKGKPRAPQ---------VY-TIPPPK---------------EQMAKDKVSLTCM 359 (434)
T ss_dssp HHTCCCBCCBCCSSCSSCCCCCCCCCCSCCBCCC---------CE-EECCCS---------------SSSSSSEEEEEEE
T ss_pred cCCCcEEEEEECCCCCCceeEEEeccCCCCcCCE---------EE-EECCCH---------------HHhcCCcEEEEEE
Confidence 9999999999999886532 3322 2334555 33 121111 1235778999999
Q ss_pred eecCCCC--ccccC
Q psy14542 360 AQGNPLP--TIKYR 371 (371)
Q Consensus 360 ~~g~p~p--~i~W~ 371 (371)
+.|++|+ .|+|+
T Consensus 360 ~~g~~P~~~~v~W~ 373 (434)
T 1igy_B 360 ITDFFPEDITVEWQ 373 (434)
T ss_dssp EEEEBCSCEEEEEE
T ss_pred EEeeECCCeEEEEE
Confidence 9996443 89995
No 64
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Probab=99.96 E-value=6.5e-28 Score=204.26 Aligned_cols=247 Identities=16% Similarity=0.211 Sum_probs=179.0
Q ss_pred ccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC-----------CeeEEEEccCCcCCCeEEEEE
Q psy14542 9 SSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN-----------SDEVLVLDRVQREDAGMYQCH 77 (371)
Q Consensus 9 ~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~-----------~~~~l~i~~~~~~d~G~Y~C~ 77 (371)
.+|.+...|.. ..+.+|+.++|.|.+ .+.|.+.+.|++++..+... ...+|.|.+++.+|+|.|+|.
T Consensus 3 ~~P~~~~~p~~-~~v~~G~~v~l~C~~-~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~ 80 (305)
T 2nzi_A 3 MAPHFKEELRN-LNVRYQSNATLVCKV-TGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVR 80 (305)
T ss_dssp CCCEEEECCCC-EEECTTCCEEEEEEE-ECSSCCEEEEEETTEECCCCSSSEEEEEETTTEEEEEESSCCGGGCSEEEEE
T ss_pred CCCeeeecccc-eEEeCCCcEEEEEEE-eCCCCCeEEEEECCEEcccCCCeEEEEECCCCEEEEEEccCChhhCeEEEEE
Confidence 46888888887 999999999999965 56778899999999877543 234899999999999999999
Q ss_pred EEcCCCCeEEEEEEEEecceeeEecC------CceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEccc
Q psy14542 78 VSADDDSAQMSAQVILGGELVEIASS------NQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRV 151 (371)
Q Consensus 78 ~~~~~~~~~~~~~l~v~~~~~~~~~~------~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~ 151 (371)
+.+..+.....+.|.|. .++.+... ....+..|+.+.|.|.+.+.+. +.+.|++++..+.....+.+...
T Consensus 81 a~n~~g~~~~~~~l~V~-~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~-p~i~W~~~~~~~~~~~~~~~~~~-- 156 (305)
T 2nzi_A 81 ATNQGGSVSGTASLEVE-VPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPD-PVITWQKGQDLIDNNGHYQVIVT-- 156 (305)
T ss_dssp EEETTEEEEEEEEEEEC-EEEEECCCHHHHSSCCEEEETTCCEEEEEEEEEESC-CEEEEEESSSBCCSSSSCEEEEC--
T ss_pred EEcCCCCccceEEEEEe-cCCccCCCccccccccEEecCCCEEEEEEEECCCCC-CEEEEEECCEECCCCCcEEEEEc--
Confidence 99988887888888887 45544332 2334478999999999998887 89999999887654432221110
Q ss_pred CcCCCeeEEEEEeCCceeEeccceEEEEE-eecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeee
Q psy14542 152 QREDAGMYQCHIEDGKYHMLSSGELIIHQ-VDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHR 230 (371)
Q Consensus 152 ~~~~~g~y~~~~~~~~~~~~~~~~l~i~~-~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~ 230 (371)
. ....|.|.+ +...| .|.|+|.+.|. .|...... .+.|...+ .+|... .
T Consensus 157 -------------~------~~~~l~i~~~~~~~d-~G~Y~C~a~N~-~G~~~~~~---~l~v~~~P--~~p~~~---~- 206 (305)
T 2nzi_A 157 -------------R------SFTSLVFPNGVERKD-AGFYVVCAKNR-FGIDQKTV---ELDVADVP--DPPRGV---K- 206 (305)
T ss_dssp -------------S------SEEEEEETTCCCSTT-CEEEEEEEEET-TEEEEEEE---EEEEEBCC--CCCEEE---E-
T ss_pred -------------C------CceEEEEecCCccCc-cEEEEEEEEeC-CCceeeEE---EEEEecCC--CCCCCc---e-
Confidence 0 125788988 99999 99999999999 77776666 77776321 122111 0
Q ss_pred eeeeecCCeEEE--------------EEEeecCCCCceEEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcC
Q psy14542 231 ILNVKKDESVIL--------------PCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNS 296 (371)
Q Consensus 231 ~~~~~~g~~~~l--------------~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~ 296 (371)
.. ...+..+.| .|.+...+.+...|.+.+.. ....+.|.++...+.|.|+|.|.|.
T Consensus 207 ~~-~~~~~~v~l~w~~p~~~g~~~i~~y~v~~~~~~~~~w~~~~~~---------~~~~~~i~~l~~~~~y~~~~~A~N~ 276 (305)
T 2nzi_A 207 VS-DVSRDSVNLTWTEPASDGGSKITNYIVEKCATTAERWLRVGQA---------RETRYTVINLFGKTSYQFRVIAENK 276 (305)
T ss_dssp EE-SCCSSCEEEEEECCSCCSBSCEEEEEEEEEETTSCCEEEEEEE---------SSSEEEECSCCSSCEEEEEEEEEET
T ss_pred ee-eccCCEEEEEEcCCccCCCCceeEEEEEEecCCCCccEECccc---------cCceEEecCCCCCCeEEEEEEEEeC
Confidence 00 122334444 44444444445556543322 2467999999999999999999999
Q ss_pred CCCce
Q psy14542 297 EGQDK 301 (371)
Q Consensus 297 ~g~~~ 301 (371)
.|...
T Consensus 277 ~G~~~ 281 (305)
T 2nzi_A 277 FGLSK 281 (305)
T ss_dssp TEECC
T ss_pred CcccC
Confidence 98754
No 65
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}
Probab=99.96 E-value=3.7e-28 Score=205.65 Aligned_cols=224 Identities=23% Similarity=0.364 Sum_probs=157.4
Q ss_pred ceeeEecCCcee-eecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccc
Q psy14542 96 ELVEIASSNQVV-VDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSG 174 (371)
Q Consensus 96 ~~~~~~~~~~~~-~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~ 174 (371)
.+|.+...+... +.+|+.++|.|.+.+.+. +.+.|++++..+........... ++ ...
T Consensus 5 ~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~-~~i~W~k~g~~i~~~~~~~~~~~---------------~~-----~~~ 63 (304)
T 2yd9_A 5 EPPRFIKEPKDQIGVSGGVASFVCQATGDPK-PRVTWNKKGKKVNSQRFETIEFD---------------ES-----AGA 63 (304)
T ss_dssp CCCEEEECCCCEEEETTSCEEEEEEEECSSC-CEEEEC-------CTTEEEEEET---------------TT-----TEE
T ss_pred cCCeeeecCCceEecCCCeEEEEEEEEEeCC-CeEEEEECCEECCCCceEEEEec---------------CC-----Cce
Confidence 455666555444 489999999999998877 89999999987754321111100 00 015
Q ss_pred eEEEEEeec-CCccceeEEEeeccccceeeeeeccceeeeecchhc--cccceeeeeeeeeeeecCCeEEEEEEeecCCC
Q psy14542 175 ELIIHQVDE-SDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRL--LSAAKMFEKHRILNVKKDESVILPCSAQGNPL 251 (371)
Q Consensus 175 ~l~i~~~~~-~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~--~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~ 251 (371)
.|.|.++.. +| +|.|+|.+.+. .|...... .|.|...... ..|.+...+.... +..|+.+.|.|.+.|.|.
T Consensus 64 ~L~i~~~~~~~D-~G~Y~C~a~n~-~g~~~~~~---~l~V~~~~~~p~~~p~i~~~~~~~~-v~~g~~v~l~C~~~g~p~ 137 (304)
T 2yd9_A 64 VLRIQPLRTPRD-ENVYECVAQNS-VGEITVHA---KLTVLREDQLPSGFPNIDMGPQLKV-VERTRTATMLCAASGNPD 137 (304)
T ss_dssp EEEECSCCTTTT-CSEEEEEEECS-SCEECCEE---EEEEECGGGCCTTCCEEEECCCCEE-EETTSCEEECCEEECSSC
T ss_pred EEEEecccccCC-CeEEEEEEECC-CCeEEEEE---EEEEeccccCCCCCCeeecCCccEE-EeCCCeEEEEEECccCCC
Confidence 799999998 99 99999999998 67655555 7777643211 1255555555555 889999999999999999
Q ss_pred CceEEEeCCcccccCC---ceE-EecceEEEeccCCCCCeEEEEEEEcCCCCceeE-EEEEEe---cCcccccccceEEE
Q psy14542 252 PTIKWYKQDSPVEESD---RIQ-RIGSSLSISHVEESDSGVWNCVANNSEGQDKMQ-LFIQYA---HGKYHMLSSGELII 323 (371)
Q Consensus 252 ~~v~W~~~~~~~~~~~---~~~-~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~-~~l~v~---~~p~~~~~~~~~~~ 323 (371)
+.+.|++++..+.... ++. ..++.|.|.++..+|+|.|+|.|.|..|..... ..|.|. .+|. +
T Consensus 138 ~~v~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~v~~~~~~P~---------~ 208 (304)
T 2yd9_A 138 PEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPR---------F 208 (304)
T ss_dssp CEEEEEETTEECCGGGGTTSEEECTTSCEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEECCCEEEE---------E
T ss_pred CeEEEEECCEECcCCCCcceEEeCCCeEEEEccCCcccCEEEEEEEEeCCCCEEeccEEEEEEeeccCCc---------E
Confidence 9999999998876542 232 345689999999999999999999999876432 444443 2343 3
Q ss_pred EeeeeccccccccccccccceeeeeecCCeEEEeeeeecCCCCccccC
Q psy14542 324 HQVDEKNKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKYR 371 (371)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~ 371 (371)
. ..|. ...+.+|+.++|.|.+.|.|+|.|+|+
T Consensus 209 ~--~~~~--------------~~~v~~G~~v~l~C~~~g~p~p~v~W~ 240 (304)
T 2yd9_A 209 S--ILPM--------------SHEIMPGGNVNITCVAVGSPMPYVKWM 240 (304)
T ss_dssp E--ECCC--------------CBCCCTTCCEEEEEEEEEESCCEEEEE
T ss_pred E--ecCC--------------ceEEcCCCeEEEEEEEeeeCCCEEEEE
Confidence 3 1222 126789999999999999999999996
No 66
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A
Probab=99.96 E-value=1.1e-27 Score=201.48 Aligned_cols=214 Identities=19% Similarity=0.249 Sum_probs=157.9
Q ss_pred eeeecCCcEEEEEEecCCCCCceEEEee-CCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecC
Q psy14542 106 VVVDVGHRIELHCRVSPKRLSSAKAWLK-DGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDES 184 (371)
Q Consensus 106 ~~~~~g~~v~l~C~~~~~~~~~~v~W~~-~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~ 184 (371)
..+.+|+.++|.|.+.+.++.+.+.|++ ++..+............ ......|.|.+++.+
T Consensus 12 ~~v~~G~~v~l~C~~~~~~~~~~i~W~~~~g~~~~~~~~~~~~~~~-------------------~~~~~~L~i~~~~~~ 72 (291)
T 1qz1_A 12 GEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWN-------------------DDDSSTLTIYNANID 72 (291)
T ss_dssp EEEETTCCEEEEEEESSCCSCCEEEEECTTSCBCCSSCSSEEEEEE-------------------ETTEEEEEECSCCGG
T ss_pred ceEeCCCeEEEEEEeCCCCCCcEeEEECCCCeECccCCceEEEEEc-------------------CCCeEEEEEecCCCC
Confidence 3458999999999999876448999999 67665533211100000 001268999999999
Q ss_pred CccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccc
Q psy14542 185 DRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVE 264 (371)
Q Consensus 185 d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~ 264 (371)
| +|.|+|.+.+...+...... .+.|. .+|.+...+.... +..|+.+.|.|.+.+.|.+.+.|++++..+.
T Consensus 73 D-~G~Y~C~~~n~~g~~~~~~~---~l~v~-----~~~~~~~~~~~~~-~~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~ 142 (291)
T 1qz1_A 73 D-AGIYKCVVTAEDGTQSEATV---NVKIF-----QKLMFKNAPTPQE-FKEGEDAVIVCDVVSSLPPTIIWKHKGRDVI 142 (291)
T ss_dssp G-CEEEEEEEECTTSCEEEEEE---EEEEE-----CCSEEEECCSSEE-EETTSCEEECCEEECSSCCEEEEEETTSCSS
T ss_pred C-CEEEEEEEEcCCCCeeEEEE---EEEee-----ccccccCCCCccc-ccCCCeEEEEEEeccCCCCEEEEEECCEEcc
Confidence 9 99999999998323333444 66666 5666666666666 8999999999999999999999999998775
Q ss_pred cC--CceE-EecceEEEeccCCCCCeEEEEEEEcCCCCc--eeEEEEEEecCcccccccceEEEEeeeeccccccccccc
Q psy14542 265 ES--DRIQ-RIGSSLSISHVEESDSGVWNCVANNSEGQD--KMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKM 339 (371)
Q Consensus 265 ~~--~~~~-~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~--~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (371)
.. .++. ..++.|.|.++..+|+|.|+|.|.|..+.. ...+.|.|..+|. +. ..+.
T Consensus 143 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~l~v~~~p~---------~~--~~~~--------- 202 (291)
T 1qz1_A 143 LKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPT---------VQ--ARQS--------- 202 (291)
T ss_dssp TTCCTTEEECTTSCEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEEEEEEEEEE---------EE--ESCS---------
T ss_pred cCCCceEEEccCCcEEEccCccccCeEEEEEEEecCCCceeeEEEEEEEecCCc---------cc--cccc---------
Confidence 43 2332 345689999999999999999999976543 4566777777777 44 1111
Q ss_pred cccceeeeeecCCeEEEeeeeecCCCCccccC
Q psy14542 340 FEKHRILNVKKDESVILPCSAQGNPLPTIKYR 371 (371)
Q Consensus 340 ~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~ 371 (371)
+....+.+|+.+.|.|.+.|.|+|.++|+
T Consensus 203 ---~~~~~~~~g~~v~l~C~~~g~p~p~i~W~ 231 (291)
T 1qz1_A 203 ---IVNATANLGQSVTLVCDADGFPEPTMSWT 231 (291)
T ss_dssp ---EEEEETTSCCCEEEEEEEEEESCCEEEEE
T ss_pred ---ccccccccCceEEEEEEEEEeCCCcEEEE
Confidence 11226779999999999999999999995
No 67
>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A
Probab=99.96 E-value=7.1e-29 Score=211.77 Aligned_cols=264 Identities=16% Similarity=0.197 Sum_probs=166.0
Q ss_pred cceEEEeCCCcEEEecc--CcEEEEEEecCCCC-CCeeEEEeCCEEEeeC--------------CeeEEEEccCCcCCCe
Q psy14542 10 SLSIEMSPSGQVVVDVG--HRIELHCRVSPKRL-SSAKAWLKDGLVLRRN--------------SDEVLVLDRVQREDAG 72 (371)
Q Consensus 10 ~~~~~~~p~~~~~~~~G--~~v~l~C~~~~~~~-~~~~~W~~~~~~~~~~--------------~~~~l~i~~~~~~d~G 72 (371)
+|.+.+.+.. .....| +.++|.|.+....| .+.|.|+|+|..+... ....|.|.++..+|+|
T Consensus 7 ~P~v~~~~~~-~~~~~~~~~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g 85 (323)
T 2wqr_A 7 PPTVKILQSS-CDGGGHFPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHWLSDR 85 (323)
T ss_dssp CCCCEEEEEC-CCTTSCCCSEEEEEEEEEEECCCCEEEEEEETTEECCGGGEEEEEEEETTEEEEEEEEEEEHHHHHTTC
T ss_pred CCEEEEeCCC-hHHhccCCCcEEEEEEEeCeECCCeEEEEEECCEEcccceecCCcCccCCcEEEEEEEEEcHHHcCCCC
Confidence 4556665544 223344 69999997655444 5789999999876532 1235778888888999
Q ss_pred EEEEEEEcCCCCeEEEEEEEE--ecceeeE-ecCCce-eeecCCcEEEEEEecCCCCCc---eEEEeeCC-EEeeeCCee
Q psy14542 73 MYQCHVSADDDSAQMSAQVIL--GGELVEI-ASSNQV-VVDVGHRIELHCRVSPKRLSS---AKAWLKDG-LVLRRNSDE 144 (371)
Q Consensus 73 ~Y~C~~~~~~~~~~~~~~l~v--~~~~~~~-~~~~~~-~~~~g~~v~l~C~~~~~~~~~---~v~W~~~~-~~~~~~~~~ 144 (371)
.|+|.+.+..+.....+.+.+ ....+.+ ...+.. .+.+|+.++|.|.+.+.++.+ .+.|++++ ..+.....
T Consensus 86 ~Y~C~a~n~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~v~~G~~v~L~C~~~g~~P~p~~~~i~W~k~~g~~~~~~~~- 164 (323)
T 2wqr_A 86 TYTCQVTYQGHTFEDSTKKCADSNPRGVSAYLSRPSPFDLFIRKSPTITCLVVDLAPSKGTVQLTWSRASGKPVNHSTR- 164 (323)
T ss_dssp CEEEEEEETTEEEEEEECCCCCSSGGGCEEEECCCCHHHHHTSSCCEEEEEEEEECCCSSCCEEEEEETTCCCCCCCCC-
T ss_pred cEEEEEEeCCCCcceeeecCCCCCCCCCEEEEcCCCHHHhccCCeEEEEEEEeccCCCCCceEEEEEECCCcccccccC-
Confidence 999999987654433332211 1112222 333322 247899999999998764324 89999965 33322110
Q ss_pred EEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecc-hhccccc
Q psy14542 145 VLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTEN-KRLLSAA 223 (371)
Q Consensus 145 ~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~-~~~~~p~ 223 (371)
... ....| ++. ..+.|.|.++..+| .|.|+|.+.|. .+.... .+.|... ....+|.
T Consensus 165 ~~~-----~~~~g---------~~~--~~~~L~I~~~~~~D-~G~Y~C~a~n~-~~~~~~-----~~~v~~~~~~~~~P~ 221 (323)
T 2wqr_A 165 KEE-----KQRNG---------TLT--VTSTLPVGTRDWIE-GETYQCRVTHP-HLPRAL-----MRSTTKTSGPRAAPE 221 (323)
T ss_dssp EEE-----ECTTS---------CEE--EEEEEECCHHHHHT-TCCEEEEEECT-TSSSCE-----EEEECCCCSCCBCCE
T ss_pred CCc-----cCCCC---------CEE--EEEEEEECHHHccC-CCCEEEEEECC-CCCCCe-----eeEEEccCCCCCCCE
Confidence 000 01111 222 23679999999999 99999999987 322111 2222210 0114555
Q ss_pred eeeeeeeeeeeecCCeEEEEEEeec-CCCC-ceEEEeCCcccccCCce-----------EEecceEEEeccCCCCCeEEE
Q psy14542 224 KMFEKHRILNVKKDESVILPCSAQG-NPLP-TIKWYKQDSPVEESDRI-----------QRIGSSLSISHVEESDSGVWN 290 (371)
Q Consensus 224 ~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~v~W~~~~~~~~~~~~~-----------~~~~~~l~i~~~~~~d~G~Y~ 290 (371)
+...+.... ...|+.++|.|.+.| .|.+ .+.|+++|..+...... ....+.|.|..+..+|+|.|+
T Consensus 222 v~~~~~~~~-~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~ 300 (323)
T 2wqr_A 222 VYAFATPEW-PGSRDKRTLACLIQNFMPEDISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEFI 300 (323)
T ss_dssp EEEEECCCC-TTCTTEEEEEEEEEEEBSSCCEEEEEETTEECCGGGEEECCCEECSSSSEEEEEEEEEEHHHHHHCCCEE
T ss_pred EEEeCCChH-HhcCCcEEEEEEeeeeeCCCcEEEEEECCEECCCCceeecCcccCCCCcEEEEEEEEEChHHccCCCEEE
Confidence 554433322 234999999999988 4443 79999999987653211 112246999999999999999
Q ss_pred EEEEcCCCC
Q psy14542 291 CVANNSEGQ 299 (371)
Q Consensus 291 C~a~n~~g~ 299 (371)
|.|.|..+.
T Consensus 301 C~a~n~~~~ 309 (323)
T 2wqr_A 301 CRAVHEAAS 309 (323)
T ss_dssp EEEECTTST
T ss_pred EEEEeCCCC
Confidence 999998876
No 68
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Probab=99.96 E-value=3.7e-26 Score=200.21 Aligned_cols=256 Identities=17% Similarity=0.256 Sum_probs=182.1
Q ss_pred ceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeC--CEEEeeC--------------CeeEEEEccCCcCCCeEE
Q psy14542 11 LSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKD--GLVLRRN--------------SDEVLVLDRVQREDAGMY 74 (371)
Q Consensus 11 ~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~--~~~~~~~--------------~~~~l~i~~~~~~d~G~Y 74 (371)
|.|.. +.. ..+.+|+.++|.|.+ .+.|.+.+.|+|+ |..+... ....|.|.+++.+|+|.|
T Consensus 2 P~i~~-~~~-~~~~~G~~v~l~C~~-~g~p~p~v~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y 78 (389)
T 2jll_A 2 PHIIQ-LKN-ETTYENGQVTLVCDA-EGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRY 78 (389)
T ss_dssp CEEEE-CCC-EEEETTSEEEEEEEE-ECSSCCEEEEEETTTTEEECC--CCSSSSEEEEECSSEEEEEEESCCGGGCEEE
T ss_pred CeEEe-cCc-eEEeCCCeEEEEEEe-ecccCCeEEEEeCCCCceeccCcCCCCCeEEEeccCCcceEEEcccChhhCEEE
Confidence 55555 555 788899999999954 5778899999999 8777531 356899999999999999
Q ss_pred EEEEEcCCCCeEEEEEEEEecceeeEecCCce-eeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCc
Q psy14542 75 QCHVSADDDSAQMSAQVILGGELVEIASSNQV-VVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQR 153 (371)
Q Consensus 75 ~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~-~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~ 153 (371)
+|.+.|..|.....+.|.|. .+|.+...+.. .+.+|+.+.|.|.+.+.+. +.+.|++++..+.......+.+..
T Consensus 79 ~C~a~n~~g~~~~~~~l~V~-~~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~-~~i~W~~~g~~l~~~~~~~~~~~~--- 153 (389)
T 2jll_A 79 DCEAASRIGGHQKSMYLDIE-YAPKFISNQTIYYSWEGNPINISCDVKSNPP-ASIHWRRDKLVLPAKNTTNLKTYS--- 153 (389)
T ss_dssp EEEEECSSCEEEEEEEEEEE-EEEEECCSCCEEEECTTCCEEEEECEEEESC-CEEEEEETTEESSCTTCTTEEEEE---
T ss_pred EEEEEeCCCCcceEEEEEEE-eCCEEecCcceEEeccCCEEEEEEEEEecCC-CeEEEEECCccCCcccCceEEEec---
Confidence 99999999988889999998 67777666655 3488999999999998887 999999999887654311110000
Q ss_pred CCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeee
Q psy14542 154 EDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILN 233 (371)
Q Consensus 154 ~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~ 233 (371)
++ ....|.|.++...| .|.|+|.+.|. .|...... .+.+. ..|....... ..
T Consensus 154 -----------~~-----~~~~L~i~~~~~~d-~G~Y~C~a~N~-~G~~~~~~---~l~v~-----~~P~~P~~~~-~~- 205 (389)
T 2jll_A 154 -----------TG-----RKMILEIAPTSDND-FGRYNCTATNH-IGTRFQEY---ILALA-----DVPSSPYGVK-II- 205 (389)
T ss_dssp -----------CS-----SCEEEEECCCSTTS-SEEEEEEEEET-TEEEEEEE---EEEEC-----CCCCCCEEEE-EE-
T ss_pred -----------cC-----CEEEEEECCCChhh-CEEEEEEEEcC-CCcEEEEE---EEEec-----CCCCCCcceE-Ee-
Confidence 00 12579999999999 99999999998 77665555 56554 2222111111 11
Q ss_pred eecCCeEEEEEEeec----CCCC--ceEEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCCCcee
Q psy14542 234 VKKDESVILPCSAQG----NPLP--TIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKM 302 (371)
Q Consensus 234 ~~~g~~~~l~C~~~~----~p~~--~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~ 302 (371)
...+..+.|.|.... .|.. .+.|.+++...............+.|.++...+.+.|+|.|.|..|....
T Consensus 206 ~~~~~~~~l~w~~p~~~~g~pi~~y~v~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~y~~~v~A~N~~G~~~~ 280 (389)
T 2jll_A 206 ELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVASEIWKIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDY 280 (389)
T ss_dssp EECSSCEEEEEECCSCCTTSCEEEEEEEEEETTCSCCEEEECSTTCSEEEECSCCTTCEEEEEEEEEESSCBCCC
T ss_pred eccCCEEEEEEeCCCCCCCcceEEEEEEEEECCCcccEEeeccCCcceEEECCccCCCEEEEEEEEEcCCccCCC
Confidence 233567888887422 2322 46788776522111000012357999999999999999999999987543
No 69
>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2
Probab=99.95 E-value=5.2e-27 Score=201.95 Aligned_cols=259 Identities=16% Similarity=0.244 Sum_probs=162.4
Q ss_pred CCCcEEEeccCcEEEEEEecCCC-CCCeeEEEeC--CEEEe------------------eC----------CeeEEEEcc
Q psy14542 17 PSGQVVVDVGHRIELHCRVSPKR-LSSAKAWLKD--GLVLR------------------RN----------SDEVLVLDR 65 (371)
Q Consensus 17 p~~~~~~~~G~~v~l~C~~~~~~-~~~~~~W~~~--~~~~~------------------~~----------~~~~l~i~~ 65 (371)
|.. +.+.+|++++|.|.+.... +.+.+.|+|+ +..+. .. ...+|.|.+
T Consensus 7 p~~-~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~ 85 (344)
T 1za6_B 7 SGA-EVVKPGASVKISCKASGYTFTDHAIHWVKQNPGQRLEWIGYFSPGNDDFKYNERFKGKATLTADTSASTAYVELSS 85 (344)
T ss_dssp CCC-EEECTTCCEEEEEEEESSCTTSSCEEEEEECSSSCEEEEEEEETTTTEEEECTTTBTTEEEEEETTTTEEEEEECS
T ss_pred CCC-eEEeCCCcEEEEEEcCCccccccEEEEEEECCCCCcEEEEEEecCCCceEECcccCCcEEEEEecCCCEEEEEECC
Confidence 444 7899999999999765432 4678999986 32110 00 236899999
Q ss_pred CCcCCCeEEEEEEEcCCCCeEEEEEEEEec---ceeeEec-CCceeeecCCcEEEEEEecCCCC-CceEEEeeCCEEeee
Q psy14542 66 VQREDAGMYQCHVSADDDSAQMSAQVILGG---ELVEIAS-SNQVVVDVGHRIELHCRVSPKRL-SSAKAWLKDGLVLRR 140 (371)
Q Consensus 66 ~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~---~~~~~~~-~~~~~~~~g~~v~l~C~~~~~~~-~~~v~W~~~~~~~~~ 140 (371)
++.+|+|.|+|.+.+..+.......|.|.. .+|.+.. .+...+.+|+.++|.|.+.+.++ ++.+.|++++..+..
T Consensus 86 v~~~D~G~Y~C~~~n~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~~ 165 (344)
T 1za6_B 86 LRSEDTAVYFCTRSLNMAYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGV 165 (344)
T ss_dssp CCGGGCEEEEEEETTTTCEECCCEEEEECSSCCBCCEEEEECCSCTTTSSSEEEEEEEEEEEBSSCCCEEETTTTBCTTE
T ss_pred CCcccCEEEEEEEecCcceecCcEEEEEecCCCCCCeEEEccccccccCCCcEEEEEEEeeEECCCeEEEEecCCccCce
Confidence 999999999999988543333446677763 2333332 22333478999999999988633 369999999875321
Q ss_pred CCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeec-----
Q psy14542 141 NSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTE----- 215 (371)
Q Consensus 141 ~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~----- 215 (371)
... ... ....| ++.. .+.|.|.++.. | .|.|+|.+.|. .+...... .+.+..
T Consensus 166 ~~~-----~~~-~~~~~---------~~~~--~s~L~i~~~~~-~-dG~Y~C~a~n~-~~~~~~~~---~~~~~v~~~~~ 222 (344)
T 1za6_B 166 HTF-----PAV-LQSSG---------LYSL--SSVVTVPSSSL-G-TQTYICNVNHK-PSNTKVDK---KVEPKSCDKTH 222 (344)
T ss_dssp EEC-----CCE-ECTTS---------CEEE--EEEEEEETTHH-H-HBCEEEEEEEG-GGTEEEEE---EECCCCC----
T ss_pred eEC-----CCe-ECCCC---------CEEE--EEEEEEcHHHc-C-CCcEEEEEEeC-CCCccceE---eeccccccccc
Confidence 100 000 01112 2222 25788888776 4 49999999998 55332222 221100
Q ss_pred --------------chhccccceeeeeeeeeeeecCCeEEEEEEeecC-C-CCceEEEeCCcccccCCceE---Eec---
Q psy14542 216 --------------NKRLLSAAKMFEKHRILNVKKDESVILPCSAQGN-P-LPTIKWYKQDSPVEESDRIQ---RIG--- 273 (371)
Q Consensus 216 --------------~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-p-~~~v~W~~~~~~~~~~~~~~---~~~--- 273 (371)
.....+|.+........ ...|+.+.|.|.+.|. | .+.+.|+++|..+....... ..+
T Consensus 223 ~~~~~~~~~~l~~~~~~~~~P~v~~~~~~~~-~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~g~~ 301 (344)
T 1za6_B 223 TCPPCGGGSSGGGSGGQPREPQVYTLPPSRD-ELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSF 301 (344)
T ss_dssp ----------------CCBCCEEEEECCCGG-GGGSSSEEEEEEEEEEBSSCCEEEEESSSSCCCSEEECCCEECTTSCE
T ss_pred ccCCCCCCccccccCCCCcCCEEEEeCCChH-hccCCcEEEEEEEeeEECCCeEEEEEECCeECCCcEecceEECCCCcE
Confidence 01114555554433222 3346679999999985 4 36899999998876432111 111
Q ss_pred ---ceEEEeccCCCCCeEEEEEEEcCCCCc
Q psy14542 274 ---SSLSISHVEESDSGVWNCVANNSEGQD 300 (371)
Q Consensus 274 ---~~l~i~~~~~~d~G~Y~C~a~n~~g~~ 300 (371)
+.|.|.....+|+|.|+|+|.|.....
T Consensus 302 ~~~s~l~i~~~~~~~~g~YtC~a~~~~l~~ 331 (344)
T 1za6_B 302 FLYSKLTVDKSRWQQGNVFSCSVMHEALHN 331 (344)
T ss_dssp EEEEEEEECHHHHHTTCEEEEEEECTTSTT
T ss_pred EEEEEEEEChHHccCCCeEEEEEEcCCCCC
Confidence 346666666778999999999977654
No 70
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}
Probab=99.95 E-value=2.3e-26 Score=193.32 Aligned_cols=218 Identities=18% Similarity=0.325 Sum_probs=155.1
Q ss_pred eeeEecCCce-eeecCCcEEEEEEecCCCCCceEEEee-CCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccc
Q psy14542 97 LVEIASSNQV-VVDVGHRIELHCRVSPKRLSSAKAWLK-DGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSG 174 (371)
Q Consensus 97 ~~~~~~~~~~-~~~~g~~v~l~C~~~~~~~~~~v~W~~-~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~ 174 (371)
+|.+...+.. .+.+|+.++|.|.+.+.+. .+.|++ ++..+.......+.. ++ ...
T Consensus 4 ~p~v~~~~~~~~v~~G~~v~l~C~~~~~p~--~v~W~~~~g~~~~~~~~~~~~~----------------~~-----~~~ 60 (291)
T 2wim_A 4 LLQVTISLSKVELSVGESKFFTCTAIGEPE--SIDWYNPQGEKIISTQRVVVQK----------------EG-----VRS 60 (291)
T ss_dssp CCEEEESCSEEEEETTCCEEEEEEEESCCS--EEECBCTTCCBCCCBTTEEEEE----------------ET-----TEE
T ss_pred CceEEEeccceEecCCCcEEEEEEEeCCCC--ceEEECCCCcCccCCCcEEEec----------------CC-----CEE
Confidence 3444444444 4589999999999998764 899999 565554332211110 00 114
Q ss_pred eEEEEEeecCCccceeEEEeecccccee-eeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecCCCCc
Q psy14542 175 ELIIHQVDESDRYRSYQCRGVNKLTGAS-LLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPT 253 (371)
Q Consensus 175 ~l~i~~~~~~d~~g~y~C~~~~~~~~~~-~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~ 253 (371)
.|.|.++..+| .|.|+|.+.+. .+.. .... .+.|. .+|.+...+.... +..|+.+.|.|.+.+.|.+.
T Consensus 61 ~L~i~~~~~~D-~G~Y~C~~~n~-~g~~~~~~~---~l~v~-----~~~~~~~~~~~~~-v~~G~~v~l~C~~~~~p~~~ 129 (291)
T 2wim_A 61 RLTIYNANIED-AGIYRCQATDA-KGQTQEATV---VLEIY-----QKLTFREVVSPQE-FKQGEDAEVVCRVSSSPAPA 129 (291)
T ss_dssp EEEECSCCGGG-CEEEEEEEECS-SSCEEEEEE---EEEEE-----CCCBCCSCCCSEE-EETTSCEEECCCCBCSSCCE
T ss_pred EEEEccCCccc-CEEEEEEEecc-cCceEEEEE---EEEec-----CCcceEeCCCChh-hcCCCCEEEEEEEccCCCCE
Confidence 79999999999 99999999988 5543 3333 56666 5555555555555 89999999999999999999
Q ss_pred eEEEeCCccccc--CCceE-EecceEEEeccCCCCCeEEEEEEEcCCCCc--eeEEEEEEecCcccccccceEEEEeeee
Q psy14542 254 IKWYKQDSPVEE--SDRIQ-RIGSSLSISHVEESDSGVWNCVANNSEGQD--KMQLFIQYAHGKYHMLSSGELIIHQVDE 328 (371)
Q Consensus 254 v~W~~~~~~~~~--~~~~~-~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~--~~~~~l~v~~~p~~~~~~~~~~~~~~~~ 328 (371)
+.|++++..+.. ..++. ..++.|.|.++..+|+|.|+|.+.|..+.. ...+.+.|..+|. +. ..
T Consensus 130 v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~~~~~~~~~v~~~p~---------~~--~~ 198 (291)
T 2wim_A 130 VSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPA---------IS--MP 198 (291)
T ss_dssp EEEECC----CBCCCSSEEECTTSCEEETTCCGGGCEEEEEEEEETTTTEEEEEEEEEEEEBCCC---------CB--CS
T ss_pred EEEEECCccccccCCceEEEccCCCEEEEecchhhCEEEEEEEEECCCCeeEEeeEEEEeccCCc---------cc--cC
Confidence 999999987764 33333 345689999999999999999999988653 4556777777777 33 11
Q ss_pred ccccccccccccccceeeeeecCCeEEEeeeeecCCCCccccC
Q psy14542 329 KNKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKYR 371 (371)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~ 371 (371)
+.. ....+.+|+.+.|.|.+.|+|+|.++|+
T Consensus 199 ~~~------------~~~~~~~g~~~~l~C~~~g~p~p~v~W~ 229 (291)
T 2wim_A 199 QKS------------FNATAERGEEMTFSCRASGSPEPAISWF 229 (291)
T ss_dssp CSE------------EECCSSSCCEEEEECBCCCBSCCEEEEE
T ss_pred ccc------------ccceecCCCeEEEEEEeecCCCCeEEEE
Confidence 111 1125678999999999999999999996
No 71
>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2
Probab=99.94 E-value=8.6e-27 Score=207.77 Aligned_cols=265 Identities=11% Similarity=0.125 Sum_probs=169.4
Q ss_pred cceEEEeCCCcEEEeccCcEEEEEEecCCCCCC-eeEEEeCCEEEe--------e-C---CeeEEEEccCCcCCCeEEEE
Q psy14542 10 SLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSS-AKAWLKDGLVLR--------R-N---SDEVLVLDRVQREDAGMYQC 76 (371)
Q Consensus 10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~-~~~W~~~~~~~~--------~-~---~~~~l~i~~~~~~d~G~Y~C 76 (371)
+|.+...+.. ..+.+|+.++|.|.+....|.+ .+.|++++..+. . . ....|.|.+++.+| |.|+|
T Consensus 123 ~P~i~~~~~~-~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~Y~C 200 (444)
T 1igt_B 123 APSVYPLAPV-CGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITC 200 (444)
T ss_dssp CCEEEEECCC-SSCCCSSCEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEEETTEEEEEEEEEECSTTTTT-SCCEE
T ss_pred CCceeEeccc-ccCCCCCcEEEEEEEcceeCCCcEEEEecCCCCCCeEecCccccCCcEEEEEEEEEchhhcCC-CeEEE
Confidence 4555544433 2357999999999766555665 899999876421 0 0 23568999999999 99999
Q ss_pred EEEcCCCCeEEEEEEEEe-----------------cceeeE-ecCCcee--eecCCcEEEEEEecCCC---CCceEEEee
Q psy14542 77 HVSADDDSAQMSAQVILG-----------------GELVEI-ASSNQVV--VDVGHRIELHCRVSPKR---LSSAKAWLK 133 (371)
Q Consensus 77 ~~~~~~~~~~~~~~l~v~-----------------~~~~~~-~~~~~~~--~~~g~~v~l~C~~~~~~---~~~~v~W~~ 133 (371)
.+.|..+.......+.+. ..+|.+ ...+... +.+|+.++|.|.+.+.+ +.+.++|++
T Consensus 201 ~a~n~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~~G~~~~L~C~~~g~~~~p~~~~v~W~k 280 (444)
T 1igt_B 201 NVAHPASSTKVDKKIEPRGPTIKPCPPCKCPAPNLLGGPSVFIFPPKIKDVLMISLSPIVTCVVVDVSEDDPDVQISWFV 280 (444)
T ss_dssp EEEETTTTEEEEEECCCCCCSCCCCCCCSCCCSCCCCCCEEEEECCCHHHHHCTTSCCEEEEEEEEECTTCCCCEEEEEE
T ss_pred EEEeCCCCcceEEEeccCCCCcccCCccccCCcccCCCceEEecCCchhheeecCCCcEEEEEEeecccCCCCeEEEEEE
Confidence 999988876544444321 013333 3333333 37899999999998874 336999999
Q ss_pred CCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeee
Q psy14542 134 DGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSL 213 (371)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v 213 (371)
++..+......... ...++.+. ..+.|.|.++..+| .|.|+|.|.|. .+...... .+.+
T Consensus 281 ~~~~~~~~~~~~~~--------------~~~~~~~~--~~~~L~I~~v~~~d-~G~Y~C~a~n~-~~~~~~~~---~v~~ 339 (444)
T 1igt_B 281 NNVEVHTAQTQTHR--------------EDYNSTLR--VVSALPIQHQDWMS-GKEFKCKVNNK-DLPAPIER---TISK 339 (444)
T ss_dssp TTEECSSTTCBCCE--------------EECSSSEE--EEEEEECCHHHHHT-TCEEEEEEECT-TCSSCEEE---EEEC
T ss_pred CCccccCcccccce--------------eCCCCcEE--EEEEEEEcHHHhcc-CCcEEEEEEcC-CCCCceEE---EEec
Confidence 99876543211000 00011211 23679999999999 99999999998 55432222 2221
Q ss_pred ecchhccccceeeeeeeeeeeecCCeEEEEEEeec-CCCC-ceEEEeCCcccccCCceE---Eec------ceEEEeccC
Q psy14542 214 TENKRLLSAAKMFEKHRILNVKKDESVILPCSAQG-NPLP-TIKWYKQDSPVEESDRIQ---RIG------SSLSISHVE 282 (371)
Q Consensus 214 ~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~v~W~~~~~~~~~~~~~~---~~~------~~l~i~~~~ 282 (371)
. .....+|.+...+.... ...++.++|.|.+.| .|.+ .+.|+++|..+....... ..+ +.|.|....
T Consensus 340 ~-~~~~~~P~v~~~~~~~~-~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~ 417 (444)
T 1igt_B 340 P-KGSVRAPQVYVLPPPEE-EMTKKQVTLTCMVTDFMPEDIYVEWTNNGKTELNYKNTEPVLDSDGSYFMYSKLRVEKKN 417 (444)
T ss_dssp C-CCCCBCCEEEEECCCGG-GTTSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHH
T ss_pred c-CCCCCCCEEEEeCCChH-HccCCeEEEEEEEEeeeCCCCEEEEEECCEEccccccccceeCCCCCEEEEEEEEEChHH
Confidence 0 00115666655443322 223445999999998 5655 899999998774321111 112 346677777
Q ss_pred CCCCeEEEEEEEcCCCC
Q psy14542 283 ESDSGVWNCVANNSEGQ 299 (371)
Q Consensus 283 ~~d~G~Y~C~a~n~~g~ 299 (371)
.+|+|.|+|+|.|....
T Consensus 418 ~~d~g~YtC~a~n~~l~ 434 (444)
T 1igt_B 418 WVERNSYSCSVVHEGLH 434 (444)
T ss_dssp HHTCCCEEEEEECTTSG
T ss_pred hcCCCeEEEEEECCCcC
Confidence 77899999999997643
No 72
>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}
Probab=99.94 E-value=7.1e-25 Score=198.25 Aligned_cols=304 Identities=13% Similarity=0.151 Sum_probs=180.8
Q ss_pred CCCcEEEeccCcEEEEEEecCCCC-C--CeeEEEeC--CE---EEe--------------eC----------CeeEEEEc
Q psy14542 17 PSGQVVVDVGHRIELHCRVSPKRL-S--SAKAWLKD--GL---VLR--------------RN----------SDEVLVLD 64 (371)
Q Consensus 17 p~~~~~~~~G~~v~l~C~~~~~~~-~--~~~~W~~~--~~---~~~--------------~~----------~~~~l~i~ 64 (371)
|.. +.+.+|++++|.|.+..... . ..+.|||. +. .+. .. ...+|.|.
T Consensus 7 p~~-v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~ 85 (512)
T 1zvo_C 7 SGP-GLVKPSETLSLTCIVSGGPIRRTGYYWGWIRQPPGKGLEWIGGVYYTGSIYYNPSLRGRVTISVDTSRNQFSLNLR 85 (512)
T ss_pred CCC-EEEcCCCCEEEEEEEcccccCCCCeeEEEEEeCCCCCcEEEEEEecCCCEEECCccCCceEEEecCCCCEEEEEEC
Confidence 444 88999999999997653322 2 67999984 21 110 01 24789999
Q ss_pred cCCcCCCeEEEEEEEcCCC-----------C--eEEEEEEEEec---ceeeEec-CCcee-eecCCcEEEEEEecCC-CC
Q psy14542 65 RVQREDAGMYQCHVSADDD-----------S--AQMSAQVILGG---ELVEIAS-SNQVV-VDVGHRIELHCRVSPK-RL 125 (371)
Q Consensus 65 ~~~~~d~G~Y~C~~~~~~~-----------~--~~~~~~l~v~~---~~~~~~~-~~~~~-~~~g~~v~l~C~~~~~-~~ 125 (371)
+++.+|+|.|.|.+.+..+ . ......|.|.. .+|.+.. .+... ...|+.++|.|.+.+. |.
T Consensus 86 ~v~~~Dsg~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~~~~~v~L~C~~~g~~P~ 165 (512)
T 1zvo_C 86 SMSAADTAMYYCARGNPPPYYDIGTGSDDGIDVWGQGTTVHVSSAPTKAPDVFPIISGCRHPKDNSPVVLACLITGYHPT 165 (512)
T ss_pred cCCHHHCEEEEEEEECCCCccccccccccccccccCceEEEecccCCcCCeEEeccCCcccccCCCeEEEEEEEEeeecC
Confidence 9999999999999987542 1 11335666652 2333331 22111 2346899999999887 44
Q ss_pred CceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeee
Q psy14542 126 SSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLS 205 (371)
Q Consensus 126 ~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~ 205 (371)
++.++|++++...... .........| .+... +.|.|..... + .|.|+|.+.|. .+.....
T Consensus 166 p~~v~W~~~~~~~~~~------~~~~~~~~~g---------~~~~~--s~L~i~~~~~-~-~g~ytC~v~n~-~~~~~~~ 225 (512)
T 1zvo_C 166 SVTVTWYMGTQSQPQR------TFPEIQRRDS---------YYMTS--SQLSTPLQQW-R-QGEYKCVVQHT-ASKSKKE 225 (512)
T ss_pred ceEEEEEcCcccCceE------ecCceecCCC---------CEEEE--EEEEEcHHHc-C-CceEEEEEEeC-CCCceEE
Confidence 3489999965421100 0000001122 22222 4677776554 4 79999999998 4433222
Q ss_pred e--------ccceeeeecch-----------------------------------------------hccccceeeee-e
Q psy14542 206 V--------NRGRLSLTENK-----------------------------------------------RLLSAAKMFEK-H 229 (371)
Q Consensus 206 ~--------~~~~l~v~~~~-----------------------------------------------~~~~p~~~~~~-~ 229 (371)
. ....+.+..++ ...+|.+...+ .
T Consensus 226 ~~~~~~~~~~~~~v~l~~pp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~p~v~~~~p~ 305 (512)
T 1zvo_C 226 IFRWPESPKAQASSVPTAQPQAEGSLAKATTAPATTRNTGRGGEEKKKEKEKEEQEERETKTPECPSHTQPLGVYLLTPA 305 (512)
T ss_pred EecCCCCCCcCCEEEEeCCCchhccccccccCchhhccCcccccceeccCCcccccccCcccccCCCCCCCCEEEEECCC
Confidence 1 00122332110 01223333322 2
Q ss_pred eeeeeecCCeEEEEEEeecCCC--CceEEEeCCcccccC---CceE-------EecceEEEeccCCCCCeEEEEEEEcCC
Q psy14542 230 RILNVKKDESVILPCSAQGNPL--PTIKWYKQDSPVEES---DRIQ-------RIGSSLSISHVEESDSGVWNCVANNSE 297 (371)
Q Consensus 230 ~~~~~~~g~~~~l~C~~~~~p~--~~v~W~~~~~~~~~~---~~~~-------~~~~~l~i~~~~~~d~G~Y~C~a~n~~ 297 (371)
... +..|+.++|.|.+.|.++ ..++|+++|..+... .... ...+.|.|..+..+|.|.|+|.|.|..
T Consensus 306 ~~~-~~~g~~~~L~C~v~g~~P~~~~i~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~g~y~C~a~n~~ 384 (512)
T 1zvo_C 306 VQD-LWLRDKATFTCFVVGSDLKDAHLTWEVAGKVPTGGVEEGLLERHSNGSQSQHSRLTLPRSLWNAGTSVTCTLNHPS 384 (512)
T ss_pred hHH-hccCCceEEEEEEeceECCCeEEEEEECCEeccCceeccceecCCCCeEEEEEEEEEchHHhcCCCeEEEEEEeCC
Confidence 222 567999999999998643 389999999876521 1111 112458999999999999999999988
Q ss_pred CCceeEEEEEE------ecCcccccccceEEEEeeeeccccccccccccccceeeeeecCCeEE-EeeeeecCCCC--cc
Q psy14542 298 GQDKMQLFIQY------AHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKDESVI-LPCSAQGNPLP--TI 368 (371)
Q Consensus 298 g~~~~~~~l~v------~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-l~C~~~g~p~p--~i 368 (371)
+... ...+.. ..+|. +. +..|. . +|+.+. |.|.+.|++|+ .|
T Consensus 385 ~~~~-~~~~~~~~~~~~~~~p~---------v~-~~~~~----------------~--~~~~~~~L~C~~~g~~P~~i~v 435 (512)
T 1zvo_C 385 LPPQ-RLMALREPAAQAPVKLS---------LN-LLASS----------------D--PPEAASWLLCEVSGFSPPNILL 435 (512)
T ss_pred CCCC-ceeEEeecCCCCCCCCE---------EE-EEccC----------------c--CCCCceEEEEEEeeeCCCCcEE
Confidence 7653 222222 12333 22 11110 1 689999 99999997665 57
Q ss_pred ccC
Q psy14542 369 KYR 371 (371)
Q Consensus 369 ~W~ 371 (371)
+|+
T Consensus 436 ~W~ 438 (512)
T 1zvo_C 436 MWL 438 (512)
T ss_pred EEE
Confidence 895
No 73
>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}
Probab=99.94 E-value=5.5e-27 Score=199.65 Aligned_cols=236 Identities=14% Similarity=0.175 Sum_probs=158.4
Q ss_pred eeeEecCCceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceE
Q psy14542 97 LVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGEL 176 (371)
Q Consensus 97 ~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l 176 (371)
+|.+.......+.+|+.++|.|.+.+.++.+.+.|++++..+.....+.+ ......|
T Consensus 7 ~P~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~-----------------------~~~~~~L 63 (317)
T 2y25_A 7 GPHFVEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDF-----------------------KDGICTL 63 (317)
T ss_dssp CCEEEEEEEEEEETTTEEEEEEEEESCCTTCEEEEEETTEEECCSCC----------------------------CCEEE
T ss_pred CCcEeeeeeEEECCCCeEEEEEEEcCCCCCCEEEEEECCeEcCCCCcEEE-----------------------ECCeEEE
Confidence 34454444445589999999999988743389999999988775432111 0112589
Q ss_pred EEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeec--------
Q psy14542 177 IIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQG-------- 248 (371)
Q Consensus 177 ~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~-------- 248 (371)
.|.+++.+| +|.|+|.+.+. .+...... .+.|. .+|.+...+.... +..|+.+.|.|.+.+
T Consensus 64 ~i~~~~~~d-~G~Y~C~~~n~-~g~~~~~~---~l~v~-----~~~~~~~~~~~~~-~~~g~~~~l~c~~~~~~l~c~~~ 132 (317)
T 2y25_A 64 LITEFSKKD-AGIYEVILKDD-RGKDKSRL---KLVDE-----AFKELMMEVCKKI-ALSATDLKIQSTAEGIQLYSFVT 132 (317)
T ss_dssp EETTCCSTT-CSCEEEEEESS-SCEEEEEE---CCSTH-----HHHHHHHHHHHHH-HTCBCCCEEEECSSEEEEEEEBS
T ss_pred EEccCCccc-CeEEEEEEECC-CCcEEEEE---EEEEe-----cCccccccCCcee-cccCCCeEEEeeccccEEEEEec
Confidence 999999999 99999999988 66655544 55555 3333322222233 566777777777665
Q ss_pred --CCCCceEEEeCCcccccCCceEEec----ceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEecCcccccccceEE
Q psy14542 249 --NPLPTIKWYKQDSPVEESDRIQRIG----SSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELI 322 (371)
Q Consensus 249 --~p~~~v~W~~~~~~~~~~~~~~~~~----~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~ 322 (371)
.|.+.+.|++++..+..+.++.... ..|.|.++..+|+|.|+|.|.|..|....++.|.|.........
T Consensus 133 ~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~----- 207 (317)
T 2y25_A 133 YYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAE----- 207 (317)
T ss_dssp SCCSSCEEEEEESSSBCCCCSSEEEEECSSEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECHHHHHHHHHH-----
T ss_pred cCCCCcEEEEEECCEECCCCCCeEEeccCCEEEEEECcCCcccCeeEEEEEEeCCceEEEEEEEeeeeccccchh-----
Confidence 6889999999999988777665322 34999999999999999999999998888888776531110000
Q ss_pred EEeeeeccccccccccc-cccceeeeeecCCeEEEeeeeecCCCCccccC
Q psy14542 323 IHQVDEKNKRLLSAAKM-FEKHRILNVKKDESVILPCSAQGNPLPTIKYR 371 (371)
Q Consensus 323 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~ 371 (371)
+..+..+.......|.+ ...|....+.+|+.+.|.|.+.|+|+|.++|+
T Consensus 208 ~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~ 257 (317)
T 2y25_A 208 FQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWL 257 (317)
T ss_dssp HHHHHHHHHHTTTSCEEEEBCCSEEEEETTSBBCEEEEEECSSCCEEEEE
T ss_pred hcccCCcccCcCCCCcccccCCccEEEEcCCEEEEEEEEecCCCCEEEEE
Confidence 00000000000001111 12234458899999999999999999999995
No 74
>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*
Probab=99.94 E-value=4.3e-26 Score=203.94 Aligned_cols=266 Identities=14% Similarity=0.188 Sum_probs=163.7
Q ss_pred cceEEEeCCCcEEEeccCcEEEEEEecCCCCC-CeeEEEeCCEEEe--------eC-----CeeEEEEccCCcCCCeEEE
Q psy14542 10 SLSIEMSPSGQVVVDVGHRIELHCRVSPKRLS-SAKAWLKDGLVLR--------RN-----SDEVLVLDRVQREDAGMYQ 75 (371)
Q Consensus 10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~-~~~~W~~~~~~~~--------~~-----~~~~l~i~~~~~~d~G~Y~ 75 (371)
+|.+...+.. ..+.+|+.++|.|.+....|. +.+.|++++..+. .. ....|.|.+++.+| |.|+
T Consensus 132 ~P~i~~~~~~-~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~ 209 (457)
T 1hzh_H 132 GPSVFPLAPS-SKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYI 209 (457)
T ss_dssp CCEEEEECCC-SCCCTTCCEEEEEEEESBBSCCCEEEETTTTBCTTEEEEEEEECTTSCEEEEEEEEECSGGGGT-SCCE
T ss_pred CCeEEecCcc-ccccCCCcEEEEEEEeEEeCCCeEEEEEeCCEeccceEcCceECCCCCEEEEEEEEecccccCC-ceEE
Confidence 4566655544 347899999999977655564 7899999884211 11 12379999999999 9999
Q ss_pred EEEEcCCCCeEEEEEEEEec----------------ceeeE-ecCCcee--eecCCcEEEEEEecCCCCC---ceEEEee
Q psy14542 76 CHVSADDDSAQMSAQVILGG----------------ELVEI-ASSNQVV--VDVGHRIELHCRVSPKRLS---SAKAWLK 133 (371)
Q Consensus 76 C~~~~~~~~~~~~~~l~v~~----------------~~~~~-~~~~~~~--~~~g~~v~l~C~~~~~~~~---~~v~W~~ 133 (371)
|.+.+..+.......+.+.. .+|.+ ...+... +.+|+.++|.|.+.+.++. ..++|++
T Consensus 210 C~a~n~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~~G~~v~L~C~~~g~~p~p~~~~i~W~k 289 (457)
T 1hzh_H 210 CNVNHKPSNTKVDKKAEPKSCDKTHTCPPCPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYV 289 (457)
T ss_dssp EEEEEGGGTEEEEEECCCCCSCSSCSCCSCCCCCCSSSCEEEEECCCHHHHHCTTSCCCEEEEEECCCTTCCCCEEEEEE
T ss_pred EEEEeCCCCcceeEEecccCCCcccccCCCCCccccCCceEEeECcCchhhcccCCceEEEEEEEcccCCCCceEEEEEe
Confidence 99999777655444444321 12333 2222222 3579999999999987652 3999999
Q ss_pred CCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeee
Q psy14542 134 DGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSL 213 (371)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v 213 (371)
++..+.......... ...| .+.+. +.|.|.....+| .|.|+|.|.|. .+...... .+.+
T Consensus 290 ~~~~~~~~~~~~~~~-----~~~g---------~~~~~--~~l~i~~~d~~d-~G~Y~C~a~n~-~~~~~~~~---~v~~ 348 (457)
T 1hzh_H 290 DGVEVHNAKTKPREE-----QYNS---------TYRVV--SVLTVLHQDWLN-GKEYKCKVSNK-ALPAPIEK---TISK 348 (457)
T ss_dssp TTEEECCCEEEEEEE-----CTTS---------CEEEE--EEECCCHHHHHH-TCCEEEEEECT-TSSSCEEE---EECC
T ss_pred CCcccccccccccee-----cCCC---------cEEEE--EEEEECHHHccC-CCcEEEEEeCC-CCCCcceE---EEEc
Confidence 998775432111000 0111 11111 233344445566 89999999976 33322222 2322
Q ss_pred ecchhccccceeeeeeeeeeeecCCeEEEEEEeecCCCC--ceEEEeCCcccccCCceE---Eec------ceEEEeccC
Q psy14542 214 TENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLP--TIKWYKQDSPVEESDRIQ---RIG------SSLSISHVE 282 (371)
Q Consensus 214 ~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~--~v~W~~~~~~~~~~~~~~---~~~------~~l~i~~~~ 282 (371)
.. ....+|.+...+.....+..|+ +.|.|.+.|.+++ .+.|+++|..+....... ..+ +.|.|....
T Consensus 349 ~~-~~~~~P~v~~~~~~~~~~~~~~-~~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~ 426 (457)
T 1hzh_H 349 AK-GQPREPQVYTLPPSRDELTKNQ-VSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSR 426 (457)
T ss_dssp CC-CCCBCCEEEEECCCGGGGGSSE-EEEEEEEEEEBSSCCEEEEEETTEECCCEEECCCEECTTSCEEEEEEEEEEHHH
T ss_pred cc-CCCCCCeEEEECCCccccCCCc-EEEEEEEEeEECCCCEEEEEECCEECcceeecCceeCCCCCEEEEEEEEEChHH
Confidence 00 0115566655443322144455 9999999986443 899999998875432111 112 246666666
Q ss_pred CCCCeEEEEEEEcCCCCc
Q psy14542 283 ESDSGVWNCVANNSEGQD 300 (371)
Q Consensus 283 ~~d~G~Y~C~a~n~~g~~ 300 (371)
.+|+|.|+|.|.|.....
T Consensus 427 ~~~~g~YtC~a~n~~l~~ 444 (457)
T 1hzh_H 427 WQQGNVFSCSVMHEALHN 444 (457)
T ss_dssp HHTTCCEEEEEECTTSGG
T ss_pred ccCCCeEEEEEEECCCCC
Confidence 688999999999987553
No 75
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.94 E-value=4.1e-27 Score=201.99 Aligned_cols=220 Identities=21% Similarity=0.303 Sum_probs=97.4
Q ss_pred EecCCceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEE
Q psy14542 100 IASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIH 179 (371)
Q Consensus 100 ~~~~~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~ 179 (371)
+.......+.+|+.++|.|.+.+.++.+.+.|++++..+..... +.+ .+..|.|.
T Consensus 12 ~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~g~~~~~~~~------------------------~~~-~~~~L~i~ 66 (334)
T 1ry7_B 12 PGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSER------------------------VLV-GPQRLQVL 66 (334)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCcCcEEEecCCcEEEEeeCCCCCCCcceEEEECCeeCCCccc------------------------EEe-ccceEEEe
Confidence 33344445589999999999988743379999999887654321 111 23689999
Q ss_pred EeecCCccceeEEEeeccccceeeeeeccceeeeecchhc-----------------cccceeee----eeeeeeeecCC
Q psy14542 180 QVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRL-----------------LSAAKMFE----KHRILNVKKDE 238 (371)
Q Consensus 180 ~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~-----------------~~p~~~~~----~~~~~~~~~g~ 238 (371)
+++.+| +|.|+|.+.+. +...... .|.|...... .+|.+... ..... +..|+
T Consensus 67 ~v~~~D-~G~Y~C~a~n~--~~~~~~~---~l~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~~~~~~~-v~~g~ 139 (334)
T 1ry7_B 67 NASHED-SGAYSCRQRLT--QRVLCHF---SVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLA-VPAAN 139 (334)
T ss_dssp ----------------------------------------------------------CCCCSCCTTCCCCEEE-EETTC
T ss_pred eccccc-CEEEEEEEEeC--CeEEEEE---EEEEeccCccccccccccccccccccCCCCEEeccccccceeEE-ecCCC
Confidence 999999 99999999987 4443344 5555532110 12333211 11233 88999
Q ss_pred eEEEEEEeecCCCCceEEEeCCcccccCCceE-----EecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEecCcc
Q psy14542 239 SVILPCSAQGNPLPTIKWYKQDSPVEESDRIQ-----RIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKY 313 (371)
Q Consensus 239 ~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~-----~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~ 313 (371)
.+.|.|.+.|.|.+.+.|++++..+....++. .....|.|.++..+|+|.|+|.|.|..|.....+.|.|...+.
T Consensus 140 ~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~ 219 (334)
T 1ry7_B 140 TVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSP 219 (334)
T ss_dssp CEEEECCCCCSSCCEEECCBTTBCCCTTSSTTCCCCCTTTTEEEECSCCGGGCCCEEEEEEETTEEEEEEEEEEEECCCC
T ss_pred cEEEEEEccCCCCCeEEEEECCEECcccccccceecccceEEEEECCCCcccCEEEEEEEEeCCCCEEEEEEEEEecCCC
Confidence 99999999999999999999998877654321 2345899999999999999999999999988888998886543
Q ss_pred cccccceEEEEeeeeccccccccccccccceeeeeecCCeEEEeeeeecCCCCccccC
Q psy14542 314 HMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKYR 371 (371)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~ 371 (371)
. .|.. ....|....+.+|+.+.|.|.+.|.|+|.++|+
T Consensus 220 ~-------------~p~~-------~~~~~~~~~~~~G~~v~l~C~~~g~p~p~v~W~ 257 (334)
T 1ry7_B 220 H-------------RPIL-------QAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWL 257 (334)
T ss_dssp S-------------SCBC-------CTTCSCCEEEESSCCEEECCCCBCSSCEEEEEE
T ss_pred C-------------CCce-------EecCCCceEEeCCCCEEEEEEEecCCCCeEEEE
Confidence 0 0000 011223347889999999999999999999995
No 76
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}
Probab=99.94 E-value=1.9e-25 Score=191.07 Aligned_cols=206 Identities=18% Similarity=0.294 Sum_probs=151.2
Q ss_pred eecCCcEEEEEEecCCC--------CCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEE
Q psy14542 108 VDVGHRIELHCRVSPKR--------LSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIH 179 (371)
Q Consensus 108 ~~~g~~v~l~C~~~~~~--------~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~ 179 (371)
+.+|+.+.|.|.+.+.+ +.+.+.|++++..+.... +. ..+..|.|.
T Consensus 41 v~eG~~v~L~C~~~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~------------------------~~--~~~~~L~i~ 94 (329)
T 3oq3_B 41 AALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLN------------------------RR--VKNGDLWIA 94 (329)
T ss_dssp ECTTSCEEECCHHHHCTTTGGGSCCTTCEEEEEECSSSCEECS------------------------TT--EETTEEEES
T ss_pred EECCCeEEEEccCCCCccccccccCCCCeeEEEECCCCccccC------------------------ce--eecceEEEc
Confidence 47999999999997742 237999999987655421 11 224789999
Q ss_pred EeecCCccc-eeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecCC-CCceEEE
Q psy14542 180 QVDESDRYR-SYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNP-LPTIKWY 257 (371)
Q Consensus 180 ~~~~~d~~g-~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p-~~~v~W~ 257 (371)
+++.+| +| .|+|.+.+. .|...... ...+.. .+|.+........ +..|+.+.|.|.+.|.| .+.+.|+
T Consensus 95 ~v~~~D-~Gs~Y~C~a~n~-~g~~~~~~---~~~v~~----~~p~~~~~~~~~~-~~~G~~v~L~C~~~g~p~~~~i~W~ 164 (329)
T 3oq3_B 95 NYTSND-SHRRYLCTVTTK-NGDCVQGI---VRSHIR----KPPSCIPETYELG-THDKYGIDLYCGILYAKHYNNITWY 164 (329)
T ss_dssp SCCGGG-GGCCEEEEEECT-TSCEEEEE---EEEEEC----CCCSCEEEEEETT-SSTTTCEEEECCCCSCCCCCEEEEE
T ss_pred CCChHh-CCCcEEEEEEeC-CCceeeEE---EEEEEc----CCCcEeccccceE-EeCCCcEEEEeccCCCCCCceEEEE
Confidence 999999 99 999999998 55433332 222321 3444444444344 77899999999999999 8999999
Q ss_pred eCCcccc-cCCceEEecceEEEeccCCCCCeEEEEEEEcC--CCCceeE----EEEEEecCcccccccceEEEEeeeecc
Q psy14542 258 KQDSPVE-ESDRIQRIGSSLSISHVEESDSGVWNCVANNS--EGQDKMQ----LFIQYAHGKYHMLSSGELIIHQVDEKN 330 (371)
Q Consensus 258 ~~~~~~~-~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~--~g~~~~~----~~l~v~~~p~~~~~~~~~~~~~~~~~~ 330 (371)
+++..+. ...++...++.|.|.++..+|+|.|+|.|.|. .|..... +.|.|..+|... .. +.
T Consensus 165 k~~~~l~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~g~~~~~~s~~~~l~V~~~~~~~-------~~-~~--- 233 (329)
T 3oq3_B 165 KNNQELIIDGTKYSQSGQNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHR-------FK-LI--- 233 (329)
T ss_dssp ETTEECCCSSSSEEEETTEEEECSCCGGGCEEEEEEEEECCTTSSSCEEEEEEEEEEEECCCCCC-------EE-EE---
T ss_pred ECCccCCCCCceEecCCCEEEEeecChhhCEEEEEEEEecccCCCceeEEEeeEEEEEECCCCCC-------Cc-ee---
Confidence 9999885 34556566789999999999999999999997 6654433 778887776410 00 01
Q ss_pred ccccccccccccceeeeeecCCeEEEeeeeecCC---CC-ccccC
Q psy14542 331 KRLLSAAKMFEKHRILNVKKDESVILPCSAQGNP---LP-TIKYR 371 (371)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p---~p-~i~W~ 371 (371)
.|....+.+|+.+.|.|.+.|.| +| .+.|+
T Consensus 234 -----------~~~~~~v~~G~~~~l~C~~~g~p~~~~~i~v~W~ 267 (329)
T 3oq3_B 234 -----------LDPKINVTIGEPANITCTAVSTSLLVDDVLIDWE 267 (329)
T ss_dssp -----------CCSEEEECTTSCEEEEEEEEETTCCTTCCEEEEE
T ss_pred -----------cCCeeEEecCCCEEEEEEEEECCCCCCCcEEEEE
Confidence 12224788999999999999998 67 78995
No 77
>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2
Probab=99.93 E-value=6.6e-27 Score=207.85 Aligned_cols=265 Identities=13% Similarity=0.170 Sum_probs=170.5
Q ss_pred cceEEEeCCCcEEEeccCcEEEEEEecCCCCCC-eeEEEeCCEEEe--------e-C---CeeEEEEccCCcCCCeEEEE
Q psy14542 10 SLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSS-AKAWLKDGLVLR--------R-N---SDEVLVLDRVQREDAGMYQC 76 (371)
Q Consensus 10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~-~~~W~~~~~~~~--------~-~---~~~~l~i~~~~~~d~G~Y~C 76 (371)
+|.+...+.. ..+.+|+.++|.|.+....|.+ .+.|++++..+. . . ....|.|.+++.+| |.|+|
T Consensus 119 ~P~i~~~~~~-~~~~~G~~v~L~C~~~g~~P~p~~v~W~k~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~Y~C 196 (434)
T 1igy_B 119 PPSVYPLAPG-SAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSPRPS-ETVTC 196 (434)
T ss_dssp CCCEEEECCC-CCCCCTTEEEEEEEEEEEBSSCCEEEETTTTBCSSEEECCCEECSSCEEEEEEEEEETTTTTS-SCCEE
T ss_pred CCeEEEcCCc-cccCCCCcEEEEEEEeeecCCCeEEEEeeCCcCCCeEecCceecCCcEEEEEEEEEcchhcCC-CcEEE
Confidence 4555554443 3468999999999766555665 899999886421 0 0 23468999999989 99999
Q ss_pred EEEcCCCCeEEEEEEEEec-----------c-eeeEecCCcee--eecCCcEEEEEEecCCCC---CceEEEeeCCEEee
Q psy14542 77 HVSADDDSAQMSAQVILGG-----------E-LVEIASSNQVV--VDVGHRIELHCRVSPKRL---SSAKAWLKDGLVLR 139 (371)
Q Consensus 77 ~~~~~~~~~~~~~~l~v~~-----------~-~~~~~~~~~~~--~~~g~~v~l~C~~~~~~~---~~~v~W~~~~~~~~ 139 (371)
.+.+..+.......+.+.. . +..+...+... +.+|+.++|.|.+.+.++ .+.++|++++..+.
T Consensus 197 ~a~n~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~v~~~~p~~~~~v~~G~~~~L~C~~~g~~p~P~~~~i~W~k~~~~~~ 276 (434)
T 1igy_B 197 NVAHPASSTKVDKKIVPRDCGCKPCICTVPEVSSVFIFPPKPKDTLLITVTPKVTCVVVDISKDDPEVQFSWFVDNVEVH 276 (434)
T ss_dssp EEECTTTTCCEEEECCCCCCCCCCCCCCCSSSCCEEEECCCHHHHHSTTSCCEEEEEECCCCSSCCCCCBCBBSSSCCBC
T ss_pred EEEeCCCCccceeeccCCCCCCccccCCCCcCcEEEEeCCChHHhcccCCCcEEEEEEeccccCCCCeEEEEEeCCcccC
Confidence 9999888754444443220 0 12222233222 578999999999998742 36899999987664
Q ss_pred eCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhc
Q psy14542 140 RNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRL 219 (371)
Q Consensus 140 ~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~ 219 (371)
...... ..... ++.+. ..+.|.|.++..+| .|.|+|.+.|. .+...... .+.+.. ...
T Consensus 277 ~~~~~~-----~~~~~---------~~~~~--~~~~L~i~~~~~~d-~G~Y~C~a~n~-~~~~~~~~---~v~~~~-~~~ 334 (434)
T 1igy_B 277 TAQTQP-----REEQF---------NSTFR--VVSALPIMHQDWLN-GKEFKCRVNSA-AFPAPIEK---TISKTK-GKP 334 (434)
T ss_dssp CCSCCC-----CCCCC---------SSSCC--CCCCEECCHHHHHH-TCCCBCCBCCS-SCSSCCCC---CCCCCC-SCC
T ss_pred CcccCc-----ceeCC---------CCcEE--EEEEEEECHHHccC-CCcEEEEEECC-CCCCceeE---EEeccC-CCC
Confidence 321100 00001 11221 12579999999999 99999999988 55432222 222200 011
Q ss_pred cccceeeeeeeeeeeecCCeEEEEEEeecC-CC-CceEEEeCCcccccCCceE---------EecceEEEeccCCCCCeE
Q psy14542 220 LSAAKMFEKHRILNVKKDESVILPCSAQGN-PL-PTIKWYKQDSPVEESDRIQ---------RIGSSLSISHVEESDSGV 288 (371)
Q Consensus 220 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-~~v~W~~~~~~~~~~~~~~---------~~~~~l~i~~~~~~d~G~ 288 (371)
.+|.+...+.... ...|+.+.|.|.+.|. |+ +.++|+++|..+....... ...+.|.|.....+|+|.
T Consensus 335 ~~P~v~~~~~~~~-~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~ 413 (434)
T 1igy_B 335 RAPQVYTIPPPKE-QMAKDKVSLTCMITDFFPEDITVEWQSDGQAPENYKNTQPIMDTDGSYFVYSKLNVQKSNWEAGNT 413 (434)
T ss_dssp BCCCCEEECCCSS-SSSSSEEEEEEEEEEEBCSCEEEEEEETTSCCSCCEECCCCCCSSSCEEEEEEEEEEHHHHHTTCC
T ss_pred cCCEEEEECCCHH-HhcCCcEEEEEEEEeeECCCeEEEEEECCEecCCceeccceeCCCCcEEEEEEEEECchhccCCCE
Confidence 5666665554433 4457789999999985 43 3899999999875332111 112357777777788999
Q ss_pred EEEEEEcCCCC
Q psy14542 289 WNCVANNSEGQ 299 (371)
Q Consensus 289 Y~C~a~n~~g~ 299 (371)
|+|.|.|....
T Consensus 414 YtC~a~n~~l~ 424 (434)
T 1igy_B 414 FTCSVLHEGLH 424 (434)
T ss_dssp EEEEEEETTSG
T ss_pred EEEEEEcCCCC
Confidence 99999998754
No 78
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A
Probab=99.93 E-value=9.2e-25 Score=174.67 Aligned_cols=191 Identities=23% Similarity=0.344 Sum_probs=142.3
Q ss_pred ceeeEecCCcee-eecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCC-eeEEEEcccCcCCCeeEEEEEeCCceeEecc
Q psy14542 96 ELVEIASSNQVV-VDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNS-DEVLVLDRVQREDAGMYQCHIEDGKYHMLSS 173 (371)
Q Consensus 96 ~~~~~~~~~~~~-~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~-~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~ 173 (371)
.+|.+...+... +.+|+.++|.|.+.+.+. +.+.|++++..+.... .+.+.. ..+ ..
T Consensus 5 ~pP~~~~~p~~~~v~~G~~v~l~C~~~g~p~-~~v~W~~~~~~~~~~~~~~~~~~---------------~~~-----~~ 63 (212)
T 2yd1_A 5 HPPEIIRKPQNQGVRVGGVASFYCAARGDPP-PSIVWRKNGKKVSGTQSRYTVLE---------------QPG-----GI 63 (212)
T ss_dssp CCCEEEECCCCEEEETTSCEEEEEEEECSSC-CEEEEEETTEECCTTSTTEEEEE---------------ETT-----TE
T ss_pred CCCEEEcCCCceEEecCCEEEEEEEEccCCC-CeEEEEECCEECCCCcceeEEEE---------------cCC-----Ce
Confidence 355555555443 489999999999998877 7999999998876321 111100 000 01
Q ss_pred ceEEEEEeec-CCccceeEEEeeccccce-eeeeeccceeeeecchh--ccccceeeeeeeeeeeecCCeEEEEEEeecC
Q psy14542 174 GELIIHQVDE-SDRYRSYQCRGVNKLTGA-SLLSVNRGRLSLTENKR--LLSAAKMFEKHRILNVKKDESVILPCSAQGN 249 (371)
Q Consensus 174 ~~l~i~~~~~-~d~~g~y~C~~~~~~~~~-~~~~~~~~~l~v~~~~~--~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~ 249 (371)
..|.|.++.. .| +|.|+|.+.+. .+. ..... .|.|..... ...|.+...+.... +..|+.+.|.|.+.+.
T Consensus 64 ~~L~i~~v~~~~d-~G~Y~C~~~n~-~g~~~~~~~---~l~V~~~~~~~~~~p~~~~~~~~~~-~~~g~~v~l~C~~~g~ 137 (212)
T 2yd1_A 64 SILRIEPVRAGRD-DAPYECVAENG-VGDAVSADA---TLTIYEGDKTPAGFPVITQGPGTRV-IEVGHTVLMTCKAIGN 137 (212)
T ss_dssp EEEEESSCCTTTT-CSEEEEEEECS-SSCEEEEEE---EEEEECTTCSCTTCCEEEECCCCEE-EETTCCEEECCEEECS
T ss_pred EEEEEEecCCCCc-CceEEEEEEeC-CCCeEEeeE---EEEEecccCCCCCCCeeEeCCCceE-eecCCeEEEEEEeccC
Confidence 5799999999 99 99999999998 555 55555 677763321 11256666555555 8899999999999999
Q ss_pred CCCceEEEeCCccccc-CCceEEecceEEEeccCCCCCeEEEEEEEcCCCCceeE-EEEEEecCcc
Q psy14542 250 PLPTIKWYKQDSPVEE-SDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQ-LFIQYAHGKY 313 (371)
Q Consensus 250 p~~~v~W~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~-~~l~v~~~p~ 313 (371)
|.+.+.|++++..+.. ..++...++.|.|.++..+|+|.|+|.|.|..|..... +.|.|.....
T Consensus 138 p~p~i~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~s~~~~l~V~~~~~ 203 (212)
T 2yd1_A 138 PTPNIYWIKNQTKVDMSNPRYSLKDGFLQIENSREEDQGKYECVAENSMGTEHSKATNLYVKVRRV 203 (212)
T ss_dssp SCCEEEEEETTEECCTTSTTEEEETTEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC---
T ss_pred CCCeEEEEECCeEcccCCCeEEccCCeEEEccCChhhCEEEEEEeecCCCceeEEEEEEEEEeccc
Confidence 9999999999998875 35566677899999999999999999999999998654 8888887655
No 79
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A
Probab=99.93 E-value=8.1e-25 Score=172.92 Aligned_cols=188 Identities=20% Similarity=0.287 Sum_probs=140.3
Q ss_pred eeeEecCCc-eeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccce
Q psy14542 97 LVEIASSNQ-VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGE 175 (371)
Q Consensus 97 ~~~~~~~~~-~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~ 175 (371)
+|.+...+. ..+.+|+.+.|.|.+.+.+. +.+.|++++..+....... ......+ ....
T Consensus 4 ~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~-~~v~W~~~~~~~~~~~~~~--------------~~~~~~~-----~~~~ 63 (197)
T 2j8h_A 4 APHFKEELRNLNVRYQSNATLVCKVTGHPK-PIVKWYRQGKEIIADGLKY--------------RIQEFKG-----GYHQ 63 (197)
T ss_dssp CCEEEECCCCEEEETTSCEEEEEEEECSSC-CEEEEEETTEECCCCSSSE--------------EEEEETT-----TEEE
T ss_pred CCEEEEcCCccEEcCCCEEEEEEEEeecCC-CEEEEEECCEECccCCCcE--------------EEEEcCC-----CEEE
Confidence 455554444 34489999999999998777 8999999998876532110 0000000 0137
Q ss_pred EEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecCCCCceE
Q psy14542 176 LIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIK 255 (371)
Q Consensus 176 l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~ 255 (371)
|.|.+++.+| .|.|+|.+.+. .+...... .|.|...+....|.....+.... +..|+.+.|.|.+.+.|.+.+.
T Consensus 64 L~i~~~~~~d-~G~Y~C~~~n~-~g~~~~~~---~l~V~~~p~~~~~~~~~~~~~~~-~~~g~~~~l~C~~~g~p~p~i~ 137 (197)
T 2j8h_A 64 LIIASVTDDD-ATVYQVRATNQ-GGSVSGTA---SLEVEVPAKIHLPKTLEGMGAVH-ALRGEVVSIKIPFSGKPDPVIT 137 (197)
T ss_dssp EEECSCCGGG-CSEEEEEEEET-TEEEEEEE---EEEEEEEEEECCSSCBTTBEEEE-EETTCCCEEEEEEEEESCCEEE
T ss_pred EEECcCCHHh-CEEEEEEEEEC-CCceeEEE---EEEEcCCCcCCCCccccccCeEE-EeCCCEEEEEEEEEecCCCcEE
Confidence 9999999999 99999999988 66666666 77777433222232222233444 8899999999999999999999
Q ss_pred EEeCCcccccCCceEE----ecceEEEec-cCCCCCeEEEEEEEcCCCCceeEEEEEEec
Q psy14542 256 WYKQDSPVEESDRIQR----IGSSLSISH-VEESDSGVWNCVANNSEGQDKMQLFIQYAH 310 (371)
Q Consensus 256 W~~~~~~~~~~~~~~~----~~~~l~i~~-~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~ 310 (371)
|++++..+....++.. ..+.|.|.+ +..+|+|.|+|.|.|..|....++.|.|.+
T Consensus 138 W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~d 197 (197)
T 2j8h_A 138 WQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVAD 197 (197)
T ss_dssp EEESSCEECSSSSCEEEECSSEEEEECTTCCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred EEECCEEeecCCCEEEEEcCCceEEEEeCCCCcccCEeEEEEEEeCCCcEeEEEEEEEeC
Confidence 9999998887766653 235799999 999999999999999999999999888863
No 80
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*
Probab=99.93 E-value=3.8e-25 Score=190.85 Aligned_cols=225 Identities=15% Similarity=0.177 Sum_probs=146.8
Q ss_pred ceeeecCCcEEEEEEecCCCC----------CceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccc
Q psy14542 105 QVVVDVGHRIELHCRVSPKRL----------SSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSG 174 (371)
Q Consensus 105 ~~~~~~g~~v~l~C~~~~~~~----------~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~ 174 (371)
...+.+|+.+.|.|.+.+.+. .+.+.|++++...... ..+... . .+......+.
T Consensus 16 ~v~v~~G~~v~L~C~~~~~p~~~~ys~~~~~~~~i~W~k~~~~~~~~----~~~~~~---~---------~~~~~~~~~~ 79 (349)
T 4dep_C 16 QIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLE----EPINFR---L---------PENRISKEKD 79 (349)
T ss_dssp CCEEETTSCEEEECTCCCCCSSSCHHHHHHTTCEEEEEEEESSCCCE----EECCCC---C---------GGGCEEEETT
T ss_pred eEEEecCCeEEEEccccccccccccccccCCCceEEEEECCCCCccc----cccccc---c---------cCceEeecCC
Confidence 444589999999999987542 3799999987311100 000000 0 0011112346
Q ss_pred eEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEe-----ecC
Q psy14542 175 ELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSA-----QGN 249 (371)
Q Consensus 175 ~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~-----~~~ 249 (371)
.|.|.+++.+| +|.|+|.+.+. .+....+. .|.|........+.+ ..+.... +..|+.+.|.|.+ .+.
T Consensus 80 ~L~i~~~~~~D-~G~Y~C~a~n~-~~~~~~~~---~l~V~~~~~~~~~~~-~~~~~~~-~~~g~~~~l~C~~~~~~~~g~ 152 (349)
T 4dep_C 80 VLWFRPTLLND-TGNYTCMLRNT-TYCSKVAF---PLEVVQKDSCFNSPM-KLPVHKL-YIEYGIQRITCPNVDGYFPSS 152 (349)
T ss_dssp EEEESSCCGGG-CEEEEEEEECS-SCEEEEEE---EEEEECCCTTSCCSC-CCCEEEE-ETTCSEEEEECCSCTTSSCTT
T ss_pred EEEEccCChhh-CEEEEEEEecC-CceEEEEE---EEEEecCCcccCccc-ccCccee-eecCccEEEEcCCCcccccCC
Confidence 89999999999 99999999998 66666666 788874322111111 1122334 8899999999985 678
Q ss_pred CCCceEEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCC-CCc---eeEEEEEEecCcccccccceEEEEe
Q psy14542 250 PLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSE-GQD---KMQLFIQYAHGKYHMLSSGELIIHQ 325 (371)
Q Consensus 250 p~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~-g~~---~~~~~l~v~~~p~~~~~~~~~~~~~ 325 (371)
|.+.+.|++++..+....++...+..|.|.++..+|+|.|+|.|.|.. |.. +..+.|.|..++...
T Consensus 153 p~~~v~W~k~~~~l~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~v~~~~~~~---------- 222 (349)
T 4dep_C 153 VKPTITWYMGCYKIQNFNNVIPEGMNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNA---------- 222 (349)
T ss_dssp SCCEEEEEETTEECCSCSSEEEETTEEEEESCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCGGGC----------
T ss_pred CCceEEEeeCCEECCCccceeecCCEEEEeeeeecCCcEEEEEEEEeeCCEEEEEEEEEEEEEEccCCCC----------
Confidence 999999999999887766676777889999999999999999999987 544 567777776643200
Q ss_pred eeecccccccccccccccee--eeeecCCeEEEeeeee----cCCCCccccC
Q psy14542 326 VDEKNKRLLSAAKMFEKHRI--LNVKKDESVILPCSAQ----GNPLPTIKYR 371 (371)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~~l~C~~~----g~p~p~i~W~ 371 (371)
.+|.+..++.. ..+.+|+.++|.|.+. |.|.|.+.|+
T Consensus 223 ---------~~p~i~~~~~~~~~~v~~G~~v~l~C~~~~~~~g~p~p~v~W~ 265 (349)
T 4dep_C 223 ---------VPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWT 265 (349)
T ss_dssp ---------CSCEEC----------------CCCEEEEECCCTTCCCEEEEE
T ss_pred ---------CCCeEecCCCceeEEEecCCcEEEEEEEEEccCCCCCCEEEEE
Confidence 01111111111 1677999999999999 5688999995
No 81
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}
Probab=99.93 E-value=5.4e-26 Score=195.41 Aligned_cols=225 Identities=15% Similarity=0.269 Sum_probs=159.8
Q ss_pred ceeeEecCCce-eeecCCcEEEEEEec-------CCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCc
Q psy14542 96 ELVEIASSNQV-VVDVGHRIELHCRVS-------PKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGK 167 (371)
Q Consensus 96 ~~~~~~~~~~~-~~~~g~~v~l~C~~~-------~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~ 167 (371)
..|.+...+.. .+.+|+.+.|.|.+. +.+. +.+.|++++..+...... ..+
T Consensus 17 ~~p~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~p~-~~v~W~k~~~~~~~~~~~--------------------~~~ 75 (339)
T 3o4o_C 17 SCRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPR-INLTWHKNDSARTVPGEE--------------------ETR 75 (339)
T ss_dssp -CEEEEECSCCEEEETTBCCEEECTTSCSSCCSTTSSC-CBCCCEESSCCSCCSCCS--------------------SSC
T ss_pred hhHhhCcCceEEEEECCccEEEEeccccccccccCCCC-ceEEEEECCCCcccCccc--------------------ccc
Confidence 34555555544 448999999999997 6666 899999998763221100 011
Q ss_pred eeEeccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEE--
Q psy14542 168 YHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCS-- 245 (371)
Q Consensus 168 ~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~-- 245 (371)
.. ..+..|.|.+++.+| .|.|+|.+.+. .+...... .|.|........+.+ ..... +..|+.+.|.|.
T Consensus 76 ~~-~~~~~L~i~~v~~~D-~G~Y~C~~~n~-~g~~~~~~---~l~V~~~~~~~~~~~---~~~~~-~~~g~~v~l~C~~~ 145 (339)
T 3o4o_C 76 MW-AQDGALWLLPALQED-SGTYVCTTRNA-SYCDKMSI---ELRVFENTDAFLPFI---SYPQI-LTLSTSGVLVCPDL 145 (339)
T ss_dssp EE-EETTEEEESSBCTTC-CEEEECCEEET-TEEEEEEE---EEEEECSCGGGHHHH---CEEEE-EETTSCEEEECCSC
T ss_pred EE-eeCCeEEECCCCccc-CEEEEEEEECC-cceEEEEE---EEEEEcCCCcccccc---ccceE-EECCCCEEEEecCC
Confidence 11 234689999999999 99999999988 66666666 777774322111111 11223 889999999999
Q ss_pred ---eecCCCCceEEEeCCcccccC-CceEEec--ceEEEeccCCCCCeEEEEEEEcCCCC----ceeEEEEEEecCcccc
Q psy14542 246 ---AQGNPLPTIKWYKQDSPVEES-DRIQRIG--SSLSISHVEESDSGVWNCVANNSEGQ----DKMQLFIQYAHGKYHM 315 (371)
Q Consensus 246 ---~~~~p~~~v~W~~~~~~~~~~-~~~~~~~--~~l~i~~~~~~d~G~Y~C~a~n~~g~----~~~~~~l~v~~~p~~~ 315 (371)
+.+.|.+.+.|++++..+... .++.... +.|.|.++..+|+|.|+|.|.|..|. ....+.|.|...+..
T Consensus 146 ~~~~~g~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~~~~~l~V~~~~~~- 224 (339)
T 3o4o_C 146 SEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEE- 224 (339)
T ss_dssp TTTCCSSSCCCBCCEESSCBCCTTCSSEEECTTSSEEEESSCCGGGCEEEEEEEECCBTTBCCEEEEEEEEEEECCCCC-
T ss_pred cccccCCCCceEEEecCCeeCCCCCceeEEcCCcceEEEcccCHhhCeEEEEEEEECCCCeEEEEEEEEEEEEEcCCCC-
Confidence 788899999999999988765 4444333 47999999999999999999998874 466777877754420
Q ss_pred cccceEEEEeeeeccccccccccccccceeeeeecCCeEEEeeee---ecCC-CCccccC
Q psy14542 316 LSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKDESVILPCSA---QGNP-LPTIKYR 371 (371)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~---~g~p-~p~i~W~ 371 (371)
.+|.+...+....+.+|+.+.|.|.+ .|.| +|.+.|+
T Consensus 225 -------------------~~P~i~~~~~~~~v~~G~~v~L~C~~~~~~g~P~~~~v~W~ 265 (339)
T 3o4o_C 225 -------------------TIPVIISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWT 265 (339)
T ss_dssp -------------------CCCEECCCSCCCCCCCCSCCCCCCCEEESSSCCSSCEEEEE
T ss_pred -------------------CCCEEecCCceeEeccCCCEEEEEEEECCCCCCCCceEEEE
Confidence 11222222333478899999999999 8999 7889985
No 82
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}
Probab=99.93 E-value=5.1e-25 Score=173.33 Aligned_cols=182 Identities=24% Similarity=0.392 Sum_probs=141.8
Q ss_pred ceeeEecCCcee-eecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEec-c
Q psy14542 96 ELVEIASSNQVV-VDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLS-S 173 (371)
Q Consensus 96 ~~~~~~~~~~~~-~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~-~ 173 (371)
.+|.+...+... +.+|+.+.|.|.+.+.+. +.+.|++++..+.... .++.+.. .
T Consensus 6 ~~P~i~~~~~~~~~~~G~~v~l~C~~~~~p~-~~i~W~~~~~~~~~~~-----------------------~~~~~~~~~ 61 (192)
T 2iep_A 6 KAPVITTPLETVDALVEEVATFMCAVESYPQ-PEISWTRNKILIKLFD-----------------------TRYSIRENG 61 (192)
T ss_dssp EEEEESSCCCEEEEETTSCEEEECCEEEESC-CEEEEEETTEECCTTC-----------------------TTEEEEGGG
T ss_pred CCceeecCccceeeeCCCcEEEEeeCCCCCC-CeEEEEECCEEccccC-----------------------ccEEEcCCc
Confidence 455666555543 489999999999988777 7999999998775432 1222222 2
Q ss_pred ceEEEEEeecCCccceeEEEeeccccce-eeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecCCCC
Q psy14542 174 GELIIHQVDESDRYRSYQCRGVNKLTGA-SLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLP 252 (371)
Q Consensus 174 ~~l~i~~~~~~d~~g~y~C~~~~~~~~~-~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~ 252 (371)
..|.|.+++.+| .|.|+|.+.+. .+. ..... .+.|. .+|.+...+.... +..|+.+.|.|.+.+.|.+
T Consensus 62 ~~L~i~~~~~~d-~G~Y~C~~~~~-~~~~~~~~~---~l~v~-----~~p~~~~~~~~~~-~~~g~~~~l~C~~~g~p~~ 130 (192)
T 2iep_A 62 QLLTILSVEDSD-DGIYCCTANNG-VGGAVESCG---ALQVK-----MKPKITRPPINVK-IIEGLKAVLPCTTMGNPKP 130 (192)
T ss_dssp TEEEESSCCGGG-CEEEEEEEECS-SSCCEEEEE---EEEEE-----EEEEEEECCCCEE-EETTSCEEECCEEEEESCC
T ss_pred cEEEEcCCCccc-CeEEEEEEEcC-CCceeEeEE---EEEEE-----eCCccccCCcceE-EeCCCcEEEEEEEeccCCc
Confidence 469999999999 99999999987 444 34444 67777 5666666655555 8999999999999999999
Q ss_pred ceEEEeCCcccccCCceEE-ecceEEEeccCCCCCeEEEEEEEcCCCCc-eeEEEEEEecCc
Q psy14542 253 TIKWYKQDSPVEESDRIQR-IGSSLSISHVEESDSGVWNCVANNSEGQD-KMQLFIQYAHGK 312 (371)
Q Consensus 253 ~v~W~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~v~~~p 312 (371)
.+.|++++..+....++.. .++.|.|.++..+|+|.|+|.|.|..|.. +..+.|.|..+|
T Consensus 131 ~v~W~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~pp 192 (192)
T 2iep_A 131 SVSWIKGDSALRENSRIAVLESGSLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEVEVFA 192 (192)
T ss_dssp EEEEEETTEECCCCSSEEECTTSCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC--
T ss_pred eEEEEeCCEEccCCCcEEEecCCcEEEecCChhhCEEEEEEEEcCCCcEEEEEEEEEEEeCC
Confidence 9999999998887766653 45689999999999999999999999987 567888888765
No 83
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A
Probab=99.93 E-value=1e-24 Score=171.84 Aligned_cols=184 Identities=21% Similarity=0.331 Sum_probs=140.0
Q ss_pred ceeeEecCCc-eeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCC--eeEEEEcccCcCCCeeEEEEEeCCceeEec
Q psy14542 96 ELVEIASSNQ-VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNS--DEVLVLDRVQREDAGMYQCHIEDGKYHMLS 172 (371)
Q Consensus 96 ~~~~~~~~~~-~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~--~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~ 172 (371)
.+|.+...+. ..+.+|+.++|.|.+.+.+. +.+.|++++..+.... ...+.. .+ .
T Consensus 4 ~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~-~~v~W~~~~~~~~~~~~~~~~~~~---------------~~------~ 61 (194)
T 2a38_A 4 QAPTFTQPLQSVVVLEGSTATFEAHISGFPV-PEVSWFRDGQVISTSTLPGVQISF---------------SD------G 61 (194)
T ss_dssp EEEEEEECCCCEEEETTSCEEEEEEEEEESC-CEEEEEESSSBCCTTTSTTCEEEE---------------ET------T
T ss_pred CCCeEEccCCceEEECCCEEEEEEEEEecCC-CEEEEEECCEEcccccCCceEEEe---------------CC------C
Confidence 3455555444 34489999999999988776 7999999988765542 111100 01 1
Q ss_pred cceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecCCCC
Q psy14542 173 SGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLP 252 (371)
Q Consensus 173 ~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~ 252 (371)
...|.|.+++..| .|.|+|.+.+. .+...... .+.|... ..+|.+...+.... +..|+.+.|.|.+.+.|.+
T Consensus 62 ~~~L~i~~~~~~d-~G~Y~C~~~n~-~~~~~~~~---~l~v~~~--~~~p~~~~~~~~~~-~~~g~~~~l~C~~~g~p~~ 133 (194)
T 2a38_A 62 RAKLTIPAVTKAN-SGRYSLKATNG-SGQATSTA---ELLVKAE--TAPPNFVQRLQSMT-VRQGSQVRLQVRVTGIPTP 133 (194)
T ss_dssp EEEEEESSCCGGG-CEEEEEEEEET-TEEEEEEE---EEEEECC--CEEEEEEECCCCEE-ECTTEEEEEEEEEEEESCC
T ss_pred EEEEEECCCCccc-CEEEEEEEEcC-CceEeEEE---EEEEccC--CCCCEEEeCCccEE-EcCCCEEEEEEEEEEecCC
Confidence 2579999999999 99999999988 66655555 6666532 13555555555555 8999999999999999999
Q ss_pred ceEEEeCCcccccCCceEEe--cc--eEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEe
Q psy14542 253 TIKWYKQDSPVEESDRIQRI--GS--SLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYA 309 (371)
Q Consensus 253 ~v~W~~~~~~~~~~~~~~~~--~~--~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 309 (371)
.+.|++++..+....++... +. +|.|.++..+|+|.|+|.|.|..|....++.|.|+
T Consensus 134 ~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 194 (194)
T 2a38_A 134 VVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLVQ 194 (194)
T ss_dssp EEEEEETTEECCCSSSEEEEEETTEEEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred eEEEEECCEECCCCCcEEEEEcCCEEEEEECCCChhcCeEEEEEEEeCCCceEEEEEEEEC
Confidence 99999999988877666532 22 79999999999999999999999999888888774
No 84
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R
Probab=99.93 E-value=9.7e-26 Score=191.77 Aligned_cols=216 Identities=15% Similarity=0.253 Sum_probs=151.7
Q ss_pred ceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecC
Q psy14542 105 QVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDES 184 (371)
Q Consensus 105 ~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~ 184 (371)
...+.+|+.+.|.|.+.+.++.+.+.|++++..+..... . ..++.. .+..|.|.+++.+
T Consensus 14 ~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~-----------~---------~~~~~~-~~~~L~i~~v~~~ 72 (315)
T 1itb_B 14 ILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTE-----------Q---------ASRIHQ-HKEKLWFVPAKVE 72 (315)
T ss_dssp CCEEETTSCCCCBCCCCSCCCSSCCCEECTTSCSCSCCC-----------T---------TSSSEE-CSSBEECTTCCGG
T ss_pred EEEEcCCCcEEEEeeccCcCCCceEEEEeCCCcCccccc-----------c---------CCcEec-cCCeEEECCCChh
Confidence 344589999999999998874489999999864322110 0 112222 2358999999999
Q ss_pred CccceeEEEeeccccceeeeeeccceeeeecchhccccceeeee---eeeeeeecCCeEEEEEEe------ecCCCCceE
Q psy14542 185 DRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEK---HRILNVKKDESVILPCSA------QGNPLPTIK 255 (371)
Q Consensus 185 d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~---~~~~~~~~g~~~~l~C~~------~~~p~~~v~ 255 (371)
| +|.|+|.+.+. .+...... .+.+.. .+|.+...+ .... +..|+.+.|.|.+ .|.|.+.+.
T Consensus 73 D-~G~Y~C~a~n~-~g~~~~~~---~v~v~~----~~p~~~~~~~~~~~~~-~~~g~~v~l~C~~~~~~~~~g~p~~~i~ 142 (315)
T 1itb_B 73 D-SGHYYCVVRNS-SYCLRIKI---SAKFVE----NEPNLCYNAQAIFKQK-LPVAGDGGLVCPYMEFFKNENNELPKLQ 142 (315)
T ss_dssp G-CSCCEECCCSS-SCCCCEEC---CCEEEC----CCTTSSSCGGGEEEEE-EETTSCEEEECSSCTTTCTTTTCCCCCE
T ss_pred h-CEEEEEEEeCC-ceEEEEEE---EEEEeC----CCCCcccccccccceE-EecCCCeEEEEecccccccCCCCCCEEE
Confidence 9 99999999988 66554444 444432 233332111 2233 8899999999998 789999999
Q ss_pred EEeCCcccccC-CceEEecceEEEeccCCCCCeEEEEEEE-cCCCCc---eeEEEEEEecCcccccccceEEEEeeeecc
Q psy14542 256 WYKQDSPVEES-DRIQRIGSSLSISHVEESDSGVWNCVAN-NSEGQD---KMQLFIQYAHGKYHMLSSGELIIHQVDEKN 330 (371)
Q Consensus 256 W~~~~~~~~~~-~~~~~~~~~l~i~~~~~~d~G~Y~C~a~-n~~g~~---~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~ 330 (371)
|++++..+... .++...++.|.|.++..+|+|.|+|.|. |..|.. ...+.+.+..+..
T Consensus 143 W~k~~~~l~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~~n~~g~~~~~~~~~~~~~~~~~~----------------- 205 (315)
T 1itb_B 143 WYKDCKPLLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENK----------------- 205 (315)
T ss_dssp EEETTEECCCCSSSEEEETTEEEESSCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCCC-----------------
T ss_pred EEECCEECCCccceEeecCceEEEEeceehhCcEEEEEEEcCCCCcEEEEEEEEEEEEecCCC-----------------
Confidence 99999988543 4455677899999999999999999999 788876 4445454442111
Q ss_pred ccccccccccccce-eeeeecCCeEEEeeeeecCCCCccccC
Q psy14542 331 KRLLSAAKMFEKHR-ILNVKKDESVILPCSAQGNPLPTIKYR 371 (371)
Q Consensus 331 ~~~~~~~~~~~~~~-~~~~~~g~~~~l~C~~~g~p~p~i~W~ 371 (371)
..+|.+...+. ...+.+|+.+.|.|.+.|.|+|.+.|+
T Consensus 206 ---~~~P~~~~~~~~~~~~~~g~~v~l~C~~~g~P~p~i~W~ 244 (315)
T 1itb_B 206 ---PTRPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWK 244 (315)
T ss_dssp ---CCCCEECSCCSEEEECCSSSCEEEEEEEEECTTSEEEEE
T ss_pred ---CCCCEEecCCCCcEEEeCCCcEEEEEEEecCCCCeeEEE
Confidence 01111222222 237889999999999999999999995
No 85
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Probab=99.93 E-value=6e-24 Score=179.84 Aligned_cols=237 Identities=18% Similarity=0.227 Sum_probs=161.0
Q ss_pred eeeEecCCce-eeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccce
Q psy14542 97 LVEIASSNQV-VVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGE 175 (371)
Q Consensus 97 ~~~~~~~~~~-~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~ 175 (371)
+|.+...+.. .+.+|+.++|.|.+.+.+. +.+.|++++..+....... ......+ ....
T Consensus 4 ~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~-~~v~W~~~~~~~~~~~~~~--------------~~~~~~~-----~~~~ 63 (305)
T 2nzi_A 4 APHFKEELRNLNVRYQSNATLVCKVTGHPK-PIVKWYRQGKEIIADGLKY--------------RIQEFKG-----GYHQ 63 (305)
T ss_dssp CCEEEECCCCEEECTTCCEEEEEEEECSSC-CEEEEEETTEECCCCSSSE--------------EEEEETT-----TEEE
T ss_pred CCeeeecccceEEeCCCcEEEEEEEeCCCC-CeEEEEECCEEcccCCCeE--------------EEEECCC-----CEEE
Confidence 4555554443 4489999999999988877 8999999998876432110 0000000 1147
Q ss_pred EEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecCCCCceE
Q psy14542 176 LIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIK 255 (371)
Q Consensus 176 l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~ 255 (371)
|.|.+++.+| +|.|+|.+.|. .|...... .|.|...+....|.....+.... +..|+.+.|.|.+.|.|.+.+.
T Consensus 64 L~i~~v~~~d-~G~Y~C~a~n~-~g~~~~~~---~l~V~~~p~~~~~~~~~~~~~~~-~~~g~~~~l~C~~~g~p~p~i~ 137 (305)
T 2nzi_A 64 LIIASVTDDD-ATVYQVRATNQ-GGSVSGTA---SLEVEVPAKIHLPKTLEGMGAVH-ALRGEVVSIKIPFSGKPDPVIT 137 (305)
T ss_dssp EEESSCCGGG-CSEEEEEEEET-TEEEEEEE---EEEECEEEEECCCHHHHSSCCEE-EETTCCEEEEEEEEEESCCEEE
T ss_pred EEEccCChhh-CeEEEEEEEcC-CCCccceE---EEEEecCCccCCCccccccccEE-ecCCCEEEEEEEECCCCCCEEE
Confidence 9999999999 99999999998 77666666 77777322211222111223344 7889999999999999999999
Q ss_pred EEeCCcccccCCceEE----ecceEEEec-cCCCCCeEEEEEEEcCCCCceeEEEEEEecCcccccccceEEEEeeeecc
Q psy14542 256 WYKQDSPVEESDRIQR----IGSSLSISH-VEESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKN 330 (371)
Q Consensus 256 W~~~~~~~~~~~~~~~----~~~~l~i~~-~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~ 330 (371)
|++++..+....++.. ....|.|.+ +..+|+|.|+|.|.|..|....++.|.|..+|..+ ..+.+..+. +.
T Consensus 138 W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~p---~~~~~~~~~-~~ 213 (305)
T 2nzi_A 138 WQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVADVPDPP---RGVKVSDVS-RD 213 (305)
T ss_dssp EEESSSBCCSSSSCEEEECSSEEEEEETTCCCSTTCEEEEEEEEETTEEEEEEEEEEEEBCCCCC---EEEEEESCC-SS
T ss_pred EEECCEECCCCCcEEEEEcCCceEEEEecCCccCccEEEEEEEEeCCCceeeEEEEEEecCCCCC---CCceeeecc-CC
Confidence 9999998887766653 235799999 99999999999999999999999999998776522 111111000 00
Q ss_pred ccccccccccccceeeeeecCCeEEEeeeeecCCCCccccC
Q psy14542 331 KRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKYR 371 (371)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~ 371 (371)
.-.+ .+.. ....|....+.|.+...+.+...|+
T Consensus 214 ~v~l----~w~~----p~~~g~~~i~~y~v~~~~~~~~~w~ 246 (305)
T 2nzi_A 214 SVNL----TWTE----PASDGGSKITNYIVEKCATTAERWL 246 (305)
T ss_dssp CEEE----EEEC----CSCCSBSCEEEEEEEEEETTSCCEE
T ss_pred EEEE----EEcC----CccCCCCceeEEEEEEecCCCCccE
Confidence 0000 0000 0123555667888888887877773
No 86
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Probab=99.93 E-value=6.4e-24 Score=167.68 Aligned_cols=183 Identities=19% Similarity=0.317 Sum_probs=139.8
Q ss_pred ceeeEecCCc-eeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccc
Q psy14542 96 ELVEIASSNQ-VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSG 174 (371)
Q Consensus 96 ~~~~~~~~~~-~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~ 174 (371)
.+|.+...+. ..+.+|+.+.|.|.+.+.+. +.+.|++++..+.....+.+... + ...
T Consensus 6 ~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~-~~v~W~~~~~~~~~~~~~~~~~~----------------~-----~~~ 63 (197)
T 3lcy_A 6 EAPGIRKEMKDVTTKLGEAAQLSCQIVGRPL-PDIKWYRFGKELIQSRKYKMSSD----------------G-----RTH 63 (197)
T ss_dssp EEEEEEECCCCEEEETTSEEEEEEEEEEESC-CEEEEEETTEEECCCSSEEEEES----------------S-----SEE
T ss_pred CCCcccccCCceEEeCCCcEEEEEEEecCCC-CEEEEEECCEECCCCccEEEEeC----------------C-----CEE
Confidence 4555555544 34489999999999988776 79999999988865433222110 0 014
Q ss_pred eEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceee---eeeeeeeeecCCeEEEEEEeecCCC
Q psy14542 175 ELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMF---EKHRILNVKKDESVILPCSAQGNPL 251 (371)
Q Consensus 175 ~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~---~~~~~~~~~~g~~~~l~C~~~~~p~ 251 (371)
.|.|.+++.+| .|.|+|.+.+. .+...... .+.|. .+|.+.. ...... +..|+.+.|.|.+.+.|.
T Consensus 64 ~L~i~~~~~~d-~G~Y~C~~~n~-~~~~~~~~---~l~v~-----~~p~~~~~~~~~~~~~-~~~g~~~~l~C~~~~~p~ 132 (197)
T 3lcy_A 64 TLTVMTEEQED-EGVYTCIATNE-VGEVETSS---KLLLQ-----ATPQFHPGYPLKEKYY-GAVGSTLRLHVMYIGRPV 132 (197)
T ss_dssp EEEEECCSGGG-CEEEEEEEECS-SCEEEEEE---EEEEE-----EEEEECTTSCCCSEEE-EETTSCEEEEEEEEEESC
T ss_pred EEEEecCCccC-CEEEEEEEECC-CCceeEEE---EEEEE-----cCCCCCCCccCCccee-ecCCCeEEEEEEEeeeeC
Confidence 79999999999 99999999988 66666665 67776 3333322 122333 789999999999999999
Q ss_pred CceEEEeCCcccccCCceEEec----ceEEEeccCC-CCCeEEEEEEEcCCCCceeEEEEEEecC
Q psy14542 252 PTIKWYKQDSPVEESDRIQRIG----SSLSISHVEE-SDSGVWNCVANNSEGQDKMQLFIQYAHG 311 (371)
Q Consensus 252 ~~v~W~~~~~~~~~~~~~~~~~----~~l~i~~~~~-~d~G~Y~C~a~n~~g~~~~~~~l~v~~~ 311 (371)
+.+.|++++..+....++.... +.|.|.++.. +|+|.|+|.|.|..|....++.|.|.++
T Consensus 133 p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~k 197 (197)
T 3lcy_A 133 PAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEIQDK 197 (197)
T ss_dssp CEEEEEETTEECCCCSSEEEEECSSEEEEEESSCCHHHHCEEEEEEEECSSCEEEEEEEEEEECC
T ss_pred CeeEEeECCEECCCCCceEEEEcCCEEEEEEccccchhhCceEEEEEEcCcCceEEEEEEEEecC
Confidence 9999999999988777666433 5799999984 8999999999999999999999988753
No 87
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Probab=99.93 E-value=4.4e-24 Score=176.52 Aligned_cols=200 Identities=15% Similarity=0.229 Sum_probs=147.2
Q ss_pred eEecCCce-eeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEE
Q psy14542 99 EIASSNQV-VVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELI 177 (371)
Q Consensus 99 ~~~~~~~~-~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~ 177 (371)
.+...+.. .+.+|+.+.|.|.+.+.+.+..+.|++++..+.... ..|.
T Consensus 3 ~i~~~p~~~~v~~G~~v~l~C~~~~~~~~~~~~W~~~g~~~~~~~-------------------------------~~l~ 51 (262)
T 3rjd_A 3 VITLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTST-------------------------------PSYR 51 (262)
T ss_dssp EEEESSCCSEEETTCCEEEEEECSSCCCTTCEEEEETTEECSCCS-------------------------------SEEE
T ss_pred eEecCCCcEEeeCCCeEEEEEECCCCCCCceEEEEECCEEeeccC-------------------------------CeEE
Confidence 34444444 558999999999998887734999999998775431 5788
Q ss_pred EEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEe-ecCCCCceEE
Q psy14542 178 IHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSA-QGNPLPTIKW 256 (371)
Q Consensus 178 i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~v~W 256 (371)
|.+++.+| .|.|+|.+.+. .+. ... .+.|. .++ +...+.... +.+|+.+.|.|.+ .+.|.+.+.|
T Consensus 52 i~~~~~~d-~G~Y~C~~~~~-~~s--~~~---~l~v~-----~~~-~~~~~~~~~-~~~g~~v~l~C~~~~~~p~~~v~W 117 (262)
T 3rjd_A 52 ITSASVND-SGEYRCQRGLS-GRS--DPI---QLEIH-----RGW-LLLQVSSRV-FTEGEPLALRCHAWKDKLVYNVLY 117 (262)
T ss_dssp ESSCCGGG-CEEEEEEESSS-CCC--CCE---EEEEE-----CSS-EEEEESCSE-EETTSCEEEEEEEGGGCCCEEEEE
T ss_pred EecCCccc-CeEEEEEEecC-Ccc--ccE---EEEEe-----ccc-eEecCCCeE-EecCCeEEEEEEccCCCCCceEEE
Confidence 99999999 99999999876 332 233 56665 333 233334444 8899999999999 6788889999
Q ss_pred EeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEecCcccccccceEEEEeeeecccccccc
Q psy14542 257 YKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSA 336 (371)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 336 (371)
++++..+... ..++.|.|.++..+|+|.|+|.|.|..+.....+.|.|...+..+ .+. ..+..
T Consensus 118 ~~~g~~~~~~----~~~~~l~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~V~~~~~~p------~~~--~~~~~----- 180 (262)
T 3rjd_A 118 YRNGKAFKFF----HWNSNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKELFPAP------VLN--ASVTS----- 180 (262)
T ss_dssp EETTEEEEEE----EECCCEEESSCCGGGCEEEEEEEESSSEEEEECEEEEEECSSCCC------EEE--ESSCS-----
T ss_pred EECCcccccc----CCCCeEEEEECChhhCEEEEEEEeCCCCccccceEEEeccCCCCC------eEe--ecCce-----
Confidence 9998876432 246789999999999999999999999888888888888642200 022 22211
Q ss_pred ccccccceeeeeecCCeEEEeeeeecCCC-Ccccc
Q psy14542 337 AKMFEKHRILNVKKDESVILPCSAQGNPL-PTIKY 370 (371)
Q Consensus 337 ~~~~~~~~~~~~~~g~~~~l~C~~~g~p~-p~i~W 370 (371)
.+.+|+.+.|.|.+.|.|+ |.+.|
T Consensus 181 ----------~~~~g~~~~l~C~~~~~p~~p~~~~ 205 (262)
T 3rjd_A 181 ----------PLLEGNLVTLSCETKLLLQRPGLQL 205 (262)
T ss_dssp ----------SEETTCCEEEEEECCCCCC-----E
T ss_pred ----------eecCCCeEEEEeEcccCCCCCCccE
Confidence 5779999999999999987 65433
No 88
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}
Probab=99.93 E-value=7.4e-25 Score=184.05 Aligned_cols=203 Identities=12% Similarity=0.166 Sum_probs=149.6
Q ss_pred ceeeEecCCcee-eecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccc
Q psy14542 96 ELVEIASSNQVV-VDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSG 174 (371)
Q Consensus 96 ~~~~~~~~~~~~-~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~ 174 (371)
.+|.+...+... +.+|+.++|.|.+.+ .+.|++++..+... .....
T Consensus 11 ~~P~i~~~~~~~~v~~G~~v~l~C~~~~-----~i~W~~~~~~~~~~----------------------------~~~~~ 57 (290)
T 2o26_X 11 SPPSIHPAQSELIVEAGDTLSLTCIDPD-----FVRWTFKTYFNEMV----------------------------ENKKN 57 (290)
T ss_dssp -CCEESSCSSEEEEETTSCEEEEEECTT-----EEEEEEECSSSCEE----------------------------EECSS
T ss_pred CCCEEeCCCCeEEEcCCCcEEEEECCCC-----cEEEecCCcceeee----------------------------cCCCc
Confidence 456666544443 489999999999987 89999988755110 00116
Q ss_pred eEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecCCC-Cc
Q psy14542 175 ELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPL-PT 253 (371)
Q Consensus 175 ~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~-~~ 253 (371)
.|.|.+++.+| +|.|+|.+.+ |. .... .|.|. .+|.......... +..|+.+.|.|.+.+ |. +.
T Consensus 58 ~L~i~~~~~~d-~G~Y~C~~~n---g~-~~~~---~l~V~-----~~~~~~~~~~~~~-~~~g~~v~l~C~~~~-p~~~~ 122 (290)
T 2o26_X 58 EWIQEKAEATR-TGTYTCSNSN---GL-TSSI---YVFVR-----DPAKLFLVGLPLF-GKEDSDALVRCPLTD-PQVSQ 122 (290)
T ss_dssp EEEETTCCGGG-CEEEEEEESS---SC-EEEE---EEEEE-----CSSCCBCCCCCEE-EETTSCEEECCCBSC-CSCEE
T ss_pred eEEEeccCHHh-CeEEEEEeeC---Cc-cEEE---EEEEe-----CCCcccccccceE-EecCCeEEEeCcCCC-CCCce
Confidence 89999999999 9999999998 32 3344 67776 4444444444455 889999999999985 77 89
Q ss_pred eEE-EeCCcccccCCceEE-ecceEEEeccCCCCCe-EEEEEEEcCCCCc-eeEEEEEEe----cCcccccccceEEEEe
Q psy14542 254 IKW-YKQDSPVEESDRIQR-IGSSLSISHVEESDSG-VWNCVANNSEGQD-KMQLFIQYA----HGKYHMLSSGELIIHQ 325 (371)
Q Consensus 254 v~W-~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~G-~Y~C~a~n~~g~~-~~~~~l~v~----~~p~~~~~~~~~~~~~ 325 (371)
+.| +++|..+..+.++.. .++.|.|.++..+|+| .|+|.|.|..+.. +..+.|.|. .+|. +.
T Consensus 123 v~W~~~~g~~l~~~~~~~~~~~~~L~i~~v~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~P~---------i~- 192 (290)
T 2o26_X 123 YSLIECDGKSLPTDLTFVPNPKAGITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAIKAIPV---------VS- 192 (290)
T ss_dssp EEEEETTSCCCCTTCEEEEETTTEEEEESCCGGGTTCEEEEEEEETTEEEECCCEEEEEECCCCSCCE---------EE-
T ss_pred EEEEeCCCcCCCCCCceeeCCCCCEEEecccHHHCCCEEEEEEEECCceEEeEEEEEEEEeCCCCCCc---------cc-
Confidence 999 568888877666553 3578999999999999 9999999986653 345777776 3444 33
Q ss_pred eeeccccccccccccccceeeeeecCCeEEEeeeeecCCCCc-cccC
Q psy14542 326 VDEKNKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPT-IKYR 371 (371)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~-i~W~ 371 (371)
..| ....+.+|+.++|.|.+.|.|.|. ++|+
T Consensus 193 -~~~--------------~~~~v~~G~~v~l~C~~~g~p~p~~i~W~ 224 (290)
T 2o26_X 193 -VPE--------------TSHLLKKGDTFTVVCTIKDVSTSVNSMWL 224 (290)
T ss_dssp -CSC--------------SBCCCCTTCCEEEEEEEEESSTTCEEEEE
T ss_pred -cCC--------------CcceEecCCcEEEEEEEecCCcceeEEEe
Confidence 111 122678999999999999999997 9996
No 89
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}
Probab=99.93 E-value=2.6e-24 Score=182.69 Aligned_cols=225 Identities=12% Similarity=0.140 Sum_probs=148.7
Q ss_pred eeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCc
Q psy14542 107 VVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDR 186 (371)
Q Consensus 107 ~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~ 186 (371)
.+.+|+.+.|.|......+.+.+.|++++..+.....+.+... . ....|.|.+++.+|
T Consensus 12 ~v~eg~~v~l~~~~~~~~p~~~v~W~k~~~~i~~~~~~~~~~~---------------~------~~~~L~I~~~~~~D- 69 (312)
T 2y23_A 12 NVDDDGVISLNFECDKMTPKSEFSWSKDYVSTEDSPRLEVESK---------------G------NKTKMTFKDLGMDD- 69 (312)
T ss_dssp EECTTCCEEEEEECSSCCTTCCEEEEETTEECTTCTTEEEEEE---------------T------TEEEEEESSCCGGG-
T ss_pred EEecCCeEEEEEEEeCCCCCcEEEEEECCEECCCCCCEEEEEe---------------C------CEEEEEECcCCccC-
Confidence 3478999999999864333389999999998775432211110 0 11479999999999
Q ss_pred cceeEEEeeccccceeeeeeccceeeeecchh-------ccccceeeeee-eeeeeecCCeEEEEEEee-cCCCCceEEE
Q psy14542 187 YRSYQCRGVNKLTGASLLSVNRGRLSLTENKR-------LLSAAKMFEKH-RILNVKKDESVILPCSAQ-GNPLPTIKWY 257 (371)
Q Consensus 187 ~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~-------~~~p~~~~~~~-~~~~~~~g~~~~l~C~~~-~~p~~~v~W~ 257 (371)
.|.|+|.+.+. .|... +. .+.|..... ..+|.+..... ... +..|+.+.|.|.+. +.|.+.+.|+
T Consensus 70 ~G~Y~C~~~n~-~g~~~-s~---~l~v~~~~~~~~~~~~~~~p~~~~~~~~~~~-v~~G~~v~l~C~~~~~~p~~~v~W~ 143 (312)
T 2y23_A 70 LGIYSCDVTDT-DGIAS-SY---LIDEEELKRLLALSHEHKFPTVPVKSELAVE-ILEKGQVRFWMQAEKLSGNAKVNYI 143 (312)
T ss_dssp CEEEEEEESSS-CCCCE-EE---EECHHHHHHHHHHHHHHHSCBCCEEEEEEEE-ECSSSCEEEEEEESCCCSSCEEEEE
T ss_pred CEEEEEEEEeC-CCcEE-EE---EEEEeeeeeeecccccCCCCccccccCCceE-EeeCCCEEEEEEEEeCCCCCEEEEE
Confidence 99999999997 55332 33 444432110 01455554443 444 89999999999998 8899999999
Q ss_pred eCCcccccCCceEEec----c--eEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEecCcccccccceEEEEeeeec--
Q psy14542 258 KQDSPVEESDRIQRIG----S--SLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEK-- 329 (371)
Q Consensus 258 ~~~~~~~~~~~~~~~~----~--~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~-- 329 (371)
+++..+..+.++.... + .|.|.++..+|+|.|+|.|.|..+..... +.+..... ...+..+
T Consensus 144 ~~~~~i~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~--~~~~~~~~---------~~~~~~~~~ 212 (312)
T 2y23_A 144 FNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHST--VVLVGDVF---------KKLQKEAEF 212 (312)
T ss_dssp ETTEEECSSSSCEEEEETTTTEEEEEESCCCGGGCEEEEEEEESSSCEEEEE--EEECTHHH---------HHHHHHHHH
T ss_pred ECCEECeeCCcEEEEEccCCCEEEEEEccCCcccCEeEEEEEEeCCceEEEE--EEEcchhh---------hhhcccccc
Confidence 9999988877665332 2 39999999999999999998755443333 33321100 0000000
Q ss_pred ---cccccccccccccceeeeeecCCeEEEeeeeecCCCC-ccccC
Q psy14542 330 ---NKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLP-TIKYR 371 (371)
Q Consensus 330 ---~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p-~i~W~ 371 (371)
......+|.+...+ ...+.+|+.+.|.|.+.|.|+| .++|+
T Consensus 213 ~~~~~~~~~~p~~~~~~-~~~v~~G~~~~l~C~~~~~p~~~~v~W~ 257 (312)
T 2y23_A 213 QRQEWIRKQGPHFVEYL-SWEVTGECNVLLKCKVANIKKETHIVWY 257 (312)
T ss_dssp HHHHHHHHHSSEEEEEE-EEEEETTTEEEEEEEEESCCSSCEEEEE
T ss_pred cccchhhccCCceeecc-eEEEeCCCEEEEEEEEcCCCCCCEEEEe
Confidence 00000112222222 2478899999999999999998 99995
No 90
>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A
Probab=99.93 E-value=7.8e-24 Score=190.17 Aligned_cols=264 Identities=13% Similarity=0.178 Sum_probs=165.8
Q ss_pred cceEEEeCCCcEEEeccCcEEEEEEecCCCCC-C-eeEEEeCCEEEee---------C-----CeeEEEEccCCcCCCeE
Q psy14542 10 SLSIEMSPSGQVVVDVGHRIELHCRVSPKRLS-S-AKAWLKDGLVLRR---------N-----SDEVLVLDRVQREDAGM 73 (371)
Q Consensus 10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~-~-~~~W~~~~~~~~~---------~-----~~~~l~i~~~~~~d~G~ 73 (371)
+|.+...+.. .+.+|+.++|.|.+....|. + .+.|++++..... . ....|.|.++..+|+|.
T Consensus 127 ~P~i~~~~~~--~~~~g~~v~L~C~~~g~~P~~p~~v~W~~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~ 204 (475)
T 1iga_A 127 SPKVFPLSLC--STQPDGNVVIACLVQGFFPQEPLSVTWSESGQGVTARNFPPSQDASGDLYTTSSQLTLPATQCLAGKS 204 (475)
T ss_pred CCeEEecCcc--ccCCCCeEEEEEEEeeecCCCceEEEEcCCCcccceEeCCceecCCCCcEEEEEEEEechhHcCCCce
Confidence 4555554432 23789999999976655465 4 8999998753210 1 12358888998899999
Q ss_pred EEEEEEcCCCCe-EEEEEEEEec-----------------ceeeE-ecCCcee-eecCCcEEEEEEecCCCC--CceEEE
Q psy14542 74 YQCHVSADDDSA-QMSAQVILGG-----------------ELVEI-ASSNQVV-VDVGHRIELHCRVSPKRL--SSAKAW 131 (371)
Q Consensus 74 Y~C~~~~~~~~~-~~~~~l~v~~-----------------~~~~~-~~~~~~~-~~~g~~v~l~C~~~~~~~--~~~v~W 131 (371)
|+|.+.+..+.. ...+.|.|.. .++.+ ...+... +.+|+.+.|.|.+.+.++ ++.++|
T Consensus 205 Y~C~a~n~~~~~~~~~v~l~V~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~G~~v~L~C~~~g~~p~~~~~i~W 284 (475)
T 1iga_A 205 VTCHVKHYTNPSQDVTVPCPVPSTPPTPSPSTPPTPSPSCCHPRLSLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTW 284 (475)
T ss_pred EEEEEEECCCCceeeeEecccccCcccccccccccCCCCCCCcEEEEcCCChHHhccCCceEEEEEEEcccCCCceEEEE
Confidence 999999887632 3334433310 12333 2233332 378999999999987643 268999
Q ss_pred eeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeeecccee
Q psy14542 132 LKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRL 211 (371)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l 211 (371)
++..+....... ......| .+. ..+.|.|.++..+| .|.|+|.+.|. .+...... .+
T Consensus 285 --~~~~~~~~~~~~-----~~~~~~g---------~~~--~~~~L~I~~~~~~d-~G~Y~C~a~n~-~~~~~~~~---~v 341 (475)
T 1iga_A 285 --TPSSGKSAVQGP-----PERDLCG---------CYS--VSSVLPGCAEPWNH-GKTFTCTAAYP-ESKTPLTA---TL 341 (475)
T ss_pred --CCCCcCCccccC-----ceECCCC---------CEE--EEEEEEEchHHhcc-CCcEEEEEEcC-CCCCceEE---Ee
Confidence 333332211000 0000112 221 23679999999999 99999999998 55433222 33
Q ss_pred eeecchhccccceeeeeeeeeeeecCCeEEEEEEeecCCC--CceEEEeCCcccccCCce----E-E---------ecce
Q psy14542 212 SLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPL--PTIKWYKQDSPVEESDRI----Q-R---------IGSS 275 (371)
Q Consensus 212 ~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~--~~v~W~~~~~~~~~~~~~----~-~---------~~~~ 275 (371)
.+. ....+|.+...+.....+..|+.+.|.|.+.|.++ +.+.|+++|..+...... . . ..+.
T Consensus 342 ~~~--~~~~~P~v~~~~~~~~~v~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~gt~~~~s~ 419 (475)
T 1iga_A 342 SKS--GNTFRPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAVTSI 419 (475)
T ss_pred ecC--CCCCCCeEEEECCChHHhccCCceEEEEEEeeeECCCCEEEEEECCEECCCCceeecccccccCCCCCcEEEEEE
Confidence 221 11156666554433222678999999999998633 589999999887654211 1 1 1135
Q ss_pred EEEeccCCCCCeEEEEEEEcCCCCc
Q psy14542 276 LSISHVEESDSGVWNCVANNSEGQD 300 (371)
Q Consensus 276 l~i~~~~~~d~G~Y~C~a~n~~g~~ 300 (371)
|.|.....+|+|.|+|.|.|.....
T Consensus 420 L~i~~~~~~~~g~YtC~a~n~~l~~ 444 (475)
T 1iga_A 420 LRVAAEDWKKGDTFSCMVGHEALPL 444 (475)
T ss_pred EEEChHHhcCCCEEEEEEEcCCCCC
Confidence 6777777788999999999987653
No 91
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}
Probab=99.93 E-value=1.9e-24 Score=171.41 Aligned_cols=184 Identities=14% Similarity=0.201 Sum_probs=131.1
Q ss_pred eeEecCCceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEE
Q psy14542 98 VEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELI 177 (371)
Q Consensus 98 ~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~ 177 (371)
|.+.......+.+|+.+.|.|.+....+.+.++|+++|..+.....+.+..... .| ...|.
T Consensus 4 p~~~~~~~~~v~eg~~v~l~c~~~~~~P~p~i~W~kng~~l~~~~~~~~~~~~~----~g---------------~~~L~ 64 (207)
T 3rbs_A 4 PFTKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRN----TG---------------IIEMF 64 (207)
T ss_dssp --CCEEEEEEECGGGCEEEEEECSCCCSCCEEEEEETTEEECSSSSCEEEECTT----TC---------------EEEEE
T ss_pred CeeecCCceEEEeCCeEEEEEEEecCCCCCEEEEEECCEECccCCCEEEEEeCC----CC---------------EEEEE
Confidence 344444455568999999999997643338999999999997665433322110 00 13699
Q ss_pred EEEeecCCccceeEEEeeccccceeeeeeccceeeeecc----------------hhccccceeeeeeeeeeeecCCeEE
Q psy14542 178 IHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTEN----------------KRLLSAAKMFEKHRILNVKKDESVI 241 (371)
Q Consensus 178 i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~----------------~~~~~p~~~~~~~~~~~~~~g~~~~ 241 (371)
|.+++.+| +|.|+|.+.|. ... ... .+.+... ....+|.+.... ... +.+|+.+.
T Consensus 65 I~~v~~~D-~G~Y~C~a~Ng-~a~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~-~~~-v~~g~~v~ 135 (207)
T 3rbs_A 65 MEKLQDED-EGTYTFQLQDG-KAT--NHS---TVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYL-SWE-VTGECNVL 135 (207)
T ss_dssp ESCCCGGG-CEEEEEEEEET-TEE--EEE---EEEECTHHHHHHHHHHHHHHHHHHHHTSSEEEEEE-EEE-EETTTEEE
T ss_pred ECCCChhh-CEEEEEEEECC-CeE--EEE---EEEEEccchhhhcccccccccccccCCCCceEecC-CcE-EcCCCcEE
Confidence 99999999 99999999884 322 221 2211100 000245555444 344 89999999
Q ss_pred EEEEeecC-CCCceEEEeCCcccccCCceEEec--ceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEe
Q psy14542 242 LPCSAQGN-PLPTIKWYKQDSPVEESDRIQRIG--SSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYA 309 (371)
Q Consensus 242 l~C~~~~~-p~~~v~W~~~~~~~~~~~~~~~~~--~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 309 (371)
|.|.+.|. |.|.++|+++|..+..+.++.... .+|.|.++..+|+|.|+|.|.|..|....++.|.+.
T Consensus 136 l~C~v~g~~P~p~i~W~k~g~~l~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~~~ 206 (207)
T 3rbs_A 136 LKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDE 206 (207)
T ss_dssp EEEEEESCCTTCEEEEEETTEEECCCCCCCCSSEEEEEEETTCCGGGCEEEEEEEEETTEEEEEEEEECCC
T ss_pred EEEEEeCCCCCCEEEEEECCEECCCCCceEcCCCEEEEEECCCCcccCEEEEEEEEcCCCEEEEEEEEecC
Confidence 99999998 999999999999987766554322 369999999999999999999999999988887653
No 92
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}
Probab=99.92 E-value=7.1e-24 Score=166.46 Aligned_cols=175 Identities=21% Similarity=0.313 Sum_probs=137.8
Q ss_pred eeeEecCCceeeec-CCcEEEEEEecCCCC-CceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccc
Q psy14542 97 LVEIASSNQVVVDV-GHRIELHCRVSPKRL-SSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSG 174 (371)
Q Consensus 97 ~~~~~~~~~~~~~~-g~~v~l~C~~~~~~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~ 174 (371)
+|.+...+...+.+ |+.+.|.|.+.+.+. .+.+.|++++..+..... .. .+.
T Consensus 3 ~P~i~~~~~~~v~~~G~~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~~------------------------~~--~~~ 56 (190)
T 2wv3_A 3 EPRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRK------------------------NA--SNM 56 (190)
T ss_dssp CCEEEECCCEECCCSSSCEEEEEEEEECSSCEEEEEEEETTEECTTCCB------------------------CC--SEE
T ss_pred CCcccccceEEEccCCceEEEEEEeccCCCCceEEEEEECCEECcccce------------------------Ee--ccE
Confidence 45566666666655 999999999987653 368999999987764321 00 236
Q ss_pred eEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecCCCCce
Q psy14542 175 ELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTI 254 (371)
Q Consensus 175 ~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v 254 (371)
.|.|.+++.+| +|.|+|.+.+. +...... .|.|. .+|.+...+.... +..|+.+.|.|.+.|.|.+.+
T Consensus 57 ~L~i~~~~~~d-~G~Y~C~~~n~--~~~~~~~---~l~V~-----~~p~~~~~~~~~~-~~~g~~v~l~C~~~g~p~p~i 124 (190)
T 2wv3_A 57 EYRINKPRAED-SGEYHCVYHFV--SAPKANA---TIEVK-----AAPDITGHKRSEN-KNEGQDAMMYCKSVGYPHPEW 124 (190)
T ss_dssp EEEESSCCGGG-CEEEEEEEEET--TEEEEEE---EEEEE-----CCCEEEEECSEEE-EETTSCEEEEEEEECSSCCEE
T ss_pred EEEEecCCccc-CEEEEEEEEeC--CcccccE---EEEEe-----cCCcccccCCcce-eeCCCcEEEEEEeCccCCCce
Confidence 89999999999 99999999987 5555555 78887 6777777666666 999999999999999999999
Q ss_pred EEEe--CCcccc---cCCceEEec----ceEEEeccC-CCCCeEEEEEEEcCCCCceeEEEEEEe
Q psy14542 255 KWYK--QDSPVE---ESDRIQRIG----SSLSISHVE-ESDSGVWNCVANNSEGQDKMQLFIQYA 309 (371)
Q Consensus 255 ~W~~--~~~~~~---~~~~~~~~~----~~l~i~~~~-~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 309 (371)
.|++ ++..+. ...++.... +.|.|.++. .+|+|.|+|.|.|..|....++.|.|.
T Consensus 125 ~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~ 189 (190)
T 2wv3_A 125 MWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATNSIGSASVSTVLRVR 189 (190)
T ss_dssp EEEEEETTEEEECCCTTSCEEEEECSSEEEEEECSCCTTTSCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred EEEEcCCCceeeeecCCCeEEEecCCCeeEEEEEeccccCCCEEEEEEEEecCCcceeEEEEEEE
Confidence 9999 666543 334444322 379999999 799999999999999999999888875
No 93
>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D
Probab=99.92 E-value=1e-24 Score=185.45 Aligned_cols=224 Identities=17% Similarity=0.177 Sum_probs=148.4
Q ss_pred EEEEEEEecceeeEecCCceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCC
Q psy14542 87 MSAQVILGGELVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDG 166 (371)
Q Consensus 87 ~~~~l~v~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~ 166 (371)
..+...+. .+|.+...+...+.+|++++|.|.+.+. . +.+.|+|++..+....
T Consensus 15 ~~~~~~~~-~~P~i~~~p~~~v~~G~~v~L~C~~~~~-~-~~~~W~k~g~~~~~~~------------------------ 67 (316)
T 3vh8_G 15 KGSHMGGQ-DKPFLSAWPSAVVPRGGHVTLRCHYRHR-F-NNFMLYKEDRIHIPIF------------------------ 67 (316)
T ss_dssp ----------CCEEEEESCSEEETTSCEEEEEEBTTB-C-CSEEEEESSCSSSCHH------------------------
T ss_pred cccccCCC-CCCEeeccCCCccCCCCCEEEEEEccCC-C-ceEEEEeCCCccceee------------------------
Confidence 33445555 6777777777667899999999999887 3 6999999987643210
Q ss_pred ceeEeccceEEEEEeecCCccceeEEEeecccc----ceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEE
Q psy14542 167 KYHMLSSGELIIHQVDESDRYRSYQCRGVNKLT----GASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVIL 242 (371)
Q Consensus 167 ~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~----~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l 242 (371)
........|.|.+++.+| +|.|+|.+.+... +...... .|.|... ..+|.+...+.. . +.+|+.++|
T Consensus 68 -~~~~~~~~L~I~~v~~~D-~G~Y~C~a~~~~~~~~~~~~s~~~---~l~V~~~--~~~p~~~~~~~~-~-v~~G~~v~L 138 (316)
T 3vh8_G 68 -HGRIFQESFNMSPVTTAH-AGNYTCRGSHPHSPTGWSAPSNPV---VIMVTGN--HRKPSLLAHPGP-L-VKSGERVIL 138 (316)
T ss_dssp -HHCCBSSCEEECSCCGGG-CEEEEEEEBCSSSSSSBCCCCCCE---EEEEECS--SCCCEEEEESCS-E-EETTCCEEE
T ss_pred -cCCcceEEEEECCCCccc-CeEEEEEEEcCCCCcceecCCCcE---EEEEecC--CCCCeEEecCCC-c-cCCCCeEEE
Confidence 000112679999999999 9999999876411 1111222 4555421 134555544333 3 789999999
Q ss_pred EEEeecCCCCceEEEeCCcccccCCceE-----EecceEEEeccCCCCCeEEEEEEEcCCCCc-----eeEEEEEEecCc
Q psy14542 243 PCSAQGNPLPTIKWYKQDSPVEESDRIQ-----RIGSSLSISHVEESDSGVWNCVANNSEGQD-----KMQLFIQYAHGK 312 (371)
Q Consensus 243 ~C~~~~~p~~~v~W~~~~~~~~~~~~~~-----~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~-----~~~~~l~v~~~p 312 (371)
.|.+. .+.+.+.|++++..+....... ...+.|.|.++..+|+|.|+|.|.|..|.. +..+.|.|...+
T Consensus 139 ~C~~~-~~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~s~~~~l~V~~~~ 217 (316)
T 3vh8_G 139 QCWSD-IMFEHFFLHKEGISKDPSRLVGQIHDGVSKANFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTGPY 217 (316)
T ss_dssp EEEES-SCCSEEEEEETTCCSCCEEEECEEETTEEEEEEEECSCCGGGCEEEEEEEECTTCTTBCCCCCCCEEEEEECSS
T ss_pred EEcCC-CCCcEEEEEECCCccccceeeeeecCCCceEEEEECCCChhhCceEEEEEecCCCCccccCCCCCEEEEecCCC
Confidence 99995 4567899999998775432111 245679999999999999999999988752 555677776432
Q ss_pred ccccccceEEEEeeeeccccccccccccccceeeeeecCCeEEEeeeeecCCCCccccC
Q psy14542 313 YHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKYR 371 (371)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~ 371 (371)
..+ .+. ..|.. .+.+|+.++|.|.+. .|.+.+.|+
T Consensus 218 ~~p------~i~--~~~~~---------------~v~~G~~v~L~C~~~-~~~~~~~W~ 252 (316)
T 3vh8_G 218 EKP------SLS--AQPGP---------------KVQAGESVTLSCSSR-SSYDMYHLS 252 (316)
T ss_dssp CCC------EEE--EESCS---------------CCCTTSCCEEEEEES-SCCSEEEEE
T ss_pred CCC------eEE--eCCCC---------------eecCCCcEEEEEECC-CCCcEEEEE
Confidence 200 033 22222 467899999999997 477899995
No 94
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Probab=99.92 E-value=5.3e-24 Score=167.90 Aligned_cols=184 Identities=19% Similarity=0.263 Sum_probs=136.3
Q ss_pred eeEecCCce-eeecCCcEEEEEEec-CCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccce
Q psy14542 98 VEIASSNQV-VVDVGHRIELHCRVS-PKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGE 175 (371)
Q Consensus 98 ~~~~~~~~~-~~~~g~~v~l~C~~~-~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~ 175 (371)
+.+...+.. .+.+|+.++|.|.+. +.+. +.+.|++++..+.........+.... ++.......+.
T Consensus 3 ~~~~~~p~~~~v~~G~~v~l~C~~~~~~p~-~~v~W~~~g~~l~~~~~~~~~~~~~~------------~~~~~~~~~~~ 69 (195)
T 2c5d_C 3 SPFVGNPGNITGARGLTGTLRCQLQVQGEP-PEVHWLRDGQILELADSTQTQVPLGE------------DEQDDWIVVSQ 69 (195)
T ss_dssp CSEEECCCCEEECTTCCEEEEEEEEEESSC-CCCEEEETTEECCSCEEEEEEEECSS------------STTSEEEEEEE
T ss_pred CeeccChhheEEecCCcEEEecccccCCCC-cEEEEEECCEEcccCCCCceEEEEcc------------ccccceeeccE
Confidence 344444443 448999999999998 7776 89999999998766532111111000 11111111368
Q ss_pred EEEEEeecCCccceeEEEeeccccceeeee-eccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecCCCC-c
Q psy14542 176 LIIHQVDESDRYRSYQCRGVNKLTGASLLS-VNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLP-T 253 (371)
Q Consensus 176 l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~-~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~ 253 (371)
|.|.+++..| .|.|+|.+.+. .+..... . .|.|. .+|.+...+.... +..|+.+.|.|.+.|.|.+ .
T Consensus 70 L~i~~~~~~d-~G~Y~C~~~~~-~~~~~~~~~---~l~V~-----~~p~~~~~~~~~~-~~~g~~~~l~C~~~g~p~p~~ 138 (195)
T 2c5d_C 70 LRITSLQLSD-TGQYQCLVFLG-HQTFVSQPG---YVGLE-----GLPYFLEEPEDRT-VAANTPFNLSCQAQGPPEPVD 138 (195)
T ss_dssp EEESSCCSTT-CEEEEEEEEET-TEEEECCCE---EEEEC-----CSCEEEECCCCEE-ECTTCCEEEEEEEECSSCCCE
T ss_pred EEEEeccccC-CcEEEEEEEeC-CCceecccE---EEEEe-----cCCeEEcCCCcEE-EcCCCEEEEEeECCCCCCCCE
Confidence 9999999999 99999999987 5443222 4 67777 6777776666666 8999999999999999999 9
Q ss_pred eEEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCCCce-eEEEEEE
Q psy14542 254 IKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDK-MQLFIQY 308 (371)
Q Consensus 254 v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~-~~~~l~v 308 (371)
+.|++++..+...... ..++.|.|.++. |+|.|+|.|.|..|... ..+.|.|
T Consensus 139 v~W~~~~~~~~~~~~~-~~~~~L~i~~~~--d~G~Y~C~a~N~~g~~~s~~~~l~V 191 (195)
T 2c5d_C 139 LLWLQDAVPLATAPGH-GPQRSLHVPGLN--KTSSFSCEAHNAKGVTTSRTATITV 191 (195)
T ss_dssp EEEEESSCBSSSSTTS-SCCEEEEECCCS--SCEEEEEEEEETTEEEECCCEEEEE
T ss_pred EEEEECCEeccCCCCc-CCCCeEEEcccc--cCceEEEEEEcCCCceEEEEEEEEE
Confidence 9999999988765443 345689999887 79999999999999885 7888888
No 95
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*
Probab=99.92 E-value=3.3e-24 Score=177.62 Aligned_cols=196 Identities=15% Similarity=0.190 Sum_probs=142.0
Q ss_pred eeecCCcEEEEEEecC-CCCC-ceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEe---
Q psy14542 107 VVDVGHRIELHCRVSP-KRLS-SAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQV--- 181 (371)
Q Consensus 107 ~~~~g~~v~l~C~~~~-~~~~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~--- 181 (371)
.+.+|+.++|.|.+.+ .|.+ ..++|++++..+... +.. ....+.+..+
T Consensus 14 ~v~~G~~v~l~C~~~g~~p~p~~~v~W~k~~~~l~~~----~~~-----------------------~~~~~~~~~~~~~ 66 (265)
T 2oz4_A 14 VLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPT----VTY-----------------------GNDSFSAKASVSV 66 (265)
T ss_dssp EEETTEEEEEEEEEESCSCGGGCEEEEEETTEECCCE----EEE-----------------------CSSEEEEEEEEEE
T ss_pred eEecCCCEEEEEEccCCCCCcceEEEEEeCCEECCce----Eee-----------------------CCCeEEEEeeccc
Confidence 4589999999999998 5541 399999999876541 000 0123444443
Q ss_pred ecCCccce--eEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEeC
Q psy14542 182 DESDRYRS--YQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQ 259 (371)
Q Consensus 182 ~~~d~~g~--y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~ 259 (371)
+..| .|. |+|.+.+. .+...... .|.|... .+|.+. ..... +.+|+.+.|.|.+. |.+.+.| +
T Consensus 67 ~~~d-~g~g~Y~C~a~n~-~~~~~~~~---~l~V~~~---p~p~~~--~~~~~-v~~G~~v~l~C~~~--p~~~i~W--~ 131 (265)
T 2oz4_A 67 TAED-EGTQRLTCAVILG-NQSQETLQ---TVTIYSF---PAPNVI--LTKPE-VSEGTEVTVKCEAH--PRAKVTL--N 131 (265)
T ss_dssp CGGG-CEEEEEEEEEEET-TEEEEEEE---EEEEECC---CCCEEE--ESCSE-EETTCEEEEEEECC--TTSEEEE--S
T ss_pred cccc-CCcceEEEEEecC-CCCcEEEE---EEEEeCC---CCceee--cCCce-ecCCCcEEEEEEcc--CCCEEEE--C
Confidence 6677 774 99999998 66666565 7777632 123333 33444 88899999999988 8899999 7
Q ss_pred CcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCC-CCce---eEEEEEEecCcccccccceEEEEeeeeccccccc
Q psy14542 260 DSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSE-GQDK---MQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLS 335 (371)
Q Consensus 260 ~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~-g~~~---~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~~~~~ 335 (371)
|..+.... ..+.|.|..+..+|+|.|+|.|.|.. |... ..+.|.|..+|. +....
T Consensus 132 g~~~~~~~----~~~~l~i~~~~~~~~g~Y~C~a~n~~~g~~~~~s~~~~l~V~~~p~---------~~~~~-------- 190 (265)
T 2oz4_A 132 GVPAQPLG----PRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPR---------LDERD-------- 190 (265)
T ss_dssp SCSSSCCS----SEECCEEECCGGGTTEEEEEEEEEECSSSEEEEEEEEEEEEEEEEE---------CCGGG--------
T ss_pred CEEccCCC----CcEEEEEccccccCCceEEEEEEcCCCCCcccccccEEEEEEeCCc---------ccccc--------
Confidence 77774332 23568899999999999999998654 7655 778888888777 32011
Q ss_pred cccccccceeeeeecCCeEEEeeeeecCCCCccccC
Q psy14542 336 AAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKYR 371 (371)
Q Consensus 336 ~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~ 371 (371)
.|....+.+|+.++|.|.+.|+|+|.++|+
T Consensus 191 ------~p~~~~v~~g~~~~l~C~~~g~P~p~i~W~ 220 (265)
T 2oz4_A 191 ------CPGNWTWPENSQQTPMCQAWGNPLPELKCL 220 (265)
T ss_dssp ------SCSEEEEETTCEECCCCCCEEESCCEEEEE
T ss_pred ------CCCccEEcCCCeEEEEeECccCCCCeEEEE
Confidence 122337889999999999999999999996
No 96
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A
Probab=99.92 E-value=6.2e-24 Score=167.38 Aligned_cols=177 Identities=17% Similarity=0.286 Sum_probs=136.2
Q ss_pred cccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC-----------CeeEEEEccCCcCCCeEEEE
Q psy14542 8 KSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN-----------SDEVLVLDRVQREDAGMYQC 76 (371)
Q Consensus 8 ~~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~-----------~~~~l~i~~~~~~d~G~Y~C 76 (371)
..+|.+...|.. ..+.+|++++|.|.+ .+.|.+.+.|++++..+... ....|.|.+++.+|+|.|+|
T Consensus 3 ~~~P~~~~~~~~-~~v~~G~~v~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C 80 (194)
T 2a38_A 3 TQAPTFTQPLQS-VVVLEGSTATFEAHI-SGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSL 80 (194)
T ss_dssp CEEEEEEECCCC-EEEETTSCEEEEEEE-EEESCCEEEEEESSSBCCTTTSTTCEEEEETTEEEEEESSCCGGGCEEEEE
T ss_pred CCCCeEEccCCc-eEEECCCEEEEEEEE-EecCCCEEEEEECCEEcccccCCceEEEeCCCEEEEEECCCCcccCEEEEE
Confidence 446778888877 899999999999964 56677899999988766543 35689999999999999999
Q ss_pred EEEcCCCCeEEEEEEEEec--ceeeEecCCc-eeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCc
Q psy14542 77 HVSADDDSAQMSAQVILGG--ELVEIASSNQ-VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQR 153 (371)
Q Consensus 77 ~~~~~~~~~~~~~~l~v~~--~~~~~~~~~~-~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~ 153 (371)
.+.+..+.....+.|.|.. .+|.+...+. ..+..|+.+.|.|.+.+.+. +.+.|++++..+.....+.+...
T Consensus 81 ~~~n~~~~~~~~~~l~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~-~~v~W~~~~~~~~~~~~~~~~~~---- 155 (194)
T 2a38_A 81 KATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPT-PVVKFYRDGAEIQSSLDFQISQE---- 155 (194)
T ss_dssp EEEETTEEEEEEEEEEEECCCEEEEEEECCCCEEECTTEEEEEEEEEEEESC-CEEEEEETTEECCCSSSEEEEEE----
T ss_pred EEEcCCceEeEEEEEEEccCCCCCEEEeCCccEEEcCCCEEEEEEEEEEecC-CeEEEEECCEECCCCCcEEEEEc----
Confidence 9999887777777777763 4455544443 34589999999999988877 88999999998765433221110
Q ss_pred CCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeee
Q psy14542 154 EDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSL 213 (371)
Q Consensus 154 ~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v 213 (371)
. ....|.|.++..+| .|.|+|.+.|. .|...... .|.|
T Consensus 156 -----------~------~~~~L~i~~~~~~d-~G~Y~C~a~n~-~g~~~~~~---~l~V 193 (194)
T 2a38_A 156 -----------G------DLYSLLIAEAYPED-SGTYSVNATNS-VGRATSTA---ELLV 193 (194)
T ss_dssp -----------T------TEEEEEEEEECGGG-CEEEEEEEEET-TEEEEEEE---EEEE
T ss_pred -----------C------CEEEEEECCCChhc-CeEEEEEEEeC-CCceEEEE---EEEE
Confidence 0 01379999999999 99999999998 77666555 5554
No 97
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}
Probab=99.92 E-value=1.2e-23 Score=168.22 Aligned_cols=176 Identities=17% Similarity=0.215 Sum_probs=133.1
Q ss_pred ecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccc
Q psy14542 109 DVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYR 188 (371)
Q Consensus 109 ~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g 188 (371)
..++.+.|.|.+.+.++.+.+.|++++..+.......+... . ....|.|.+++.+| +|
T Consensus 15 c~~~~~~l~C~~~~~~p~~~i~W~~~g~~i~~~~~~~~~~~---------------~------~~~~L~i~~v~~~D-~G 72 (212)
T 2r15_A 15 STAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVT---------------G------EQIWLQINEPTPND-KG 72 (212)
T ss_dssp ECSSEEEEEEEBSSCCSSCEEEEEETTEECCCCSSEEEEEE---------------T------TEEEEEEESCCGGG-CE
T ss_pred EcCceEEEEEEEeccCCCceEEEEECCEEccCCCeEEEEEe---------------C------CEEEEEECCCCccc-CE
Confidence 67889999999988764589999999998876533221110 0 11469999999999 99
Q ss_pred eeEEEeeccccceeeeeeccceeeeecc---------------hhcccccee-eeeeeeeeeecCCeEEEEEEeecCCCC
Q psy14542 189 SYQCRGVNKLTGASLLSVNRGRLSLTEN---------------KRLLSAAKM-FEKHRILNVKKDESVILPCSAQGNPLP 252 (371)
Q Consensus 189 ~y~C~~~~~~~~~~~~~~~~~~l~v~~~---------------~~~~~p~~~-~~~~~~~~~~~g~~~~l~C~~~~~p~~ 252 (371)
.|+|.+.+. .+...... .+.+... .....|.+. ..+.... +..|+.+.|.|.+.|.|.+
T Consensus 73 ~Y~C~~~n~-~~~~~~~~---~l~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~-v~~g~~~~l~C~~~g~p~p 147 (212)
T 2r15_A 73 KYVMELFDG-KTGHQKTV---DLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVT-IQEGKALNLTCNVWGDPPP 147 (212)
T ss_dssp EEEEEEECS-SCEEEEEE---EECHHHHHHHHHHHHHHHHHHHHHHHSCEEEEBCCSEEE-EETTCCEEEEEEEECSSCC
T ss_pred EEEEEEecC-CcceEEEE---EEEEeeccchhhhccccCcccccccCCCcccccCCCcEE-EccCCeEEEEEEEcCCCCc
Confidence 999999997 66555544 5544310 000123333 2333444 8999999999999999999
Q ss_pred ceEEEeCCcccccCCceEEec-----ceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEecC
Q psy14542 253 TIKWYKQDSPVEESDRIQRIG-----SSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHG 311 (371)
Q Consensus 253 ~v~W~~~~~~~~~~~~~~~~~-----~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~ 311 (371)
.+.|++++..+....++.... ..|.|.++..+|+|.|+|.|.|..|....++.|.|..|
T Consensus 148 ~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~P 211 (212)
T 2r15_A 148 EVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFIP 211 (212)
T ss_dssp EEEEEETTEEECCCSSEEEEEETTTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred eEEEEECCeECccCCCEEEEEcCCCEEEEEEcCcchHHCeEEEEEEEcCCCcEEEEEEEEEEcc
Confidence 999999999988877666433 28999999999999999999999999999999988754
No 98
>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}
Probab=99.92 E-value=8.1e-25 Score=185.46 Aligned_cols=228 Identities=17% Similarity=0.260 Sum_probs=148.2
Q ss_pred CCceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEccc--CcCCCeeEEEEEeCCceeEe----ccceE
Q psy14542 103 SNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRV--QREDAGMYQCHIEDGKYHML----SSGEL 176 (371)
Q Consensus 103 ~~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~--~~~~~g~y~~~~~~~~~~~~----~~~~l 176 (371)
.+...+..|++++|.|.+.+.++...++|+|++...... +.+... .....+.| .++..+. .+.+|
T Consensus 6 ~p~vtv~~G~~v~L~C~v~~~~~~~~v~W~k~~~~~~~~----~~~~~~~~~~~~~~~~-----~~r~~~~~~~~~~~sL 76 (308)
T 4fom_A 6 EPHVTAVWGKNVSLKCLIEVNETITQISWEKIHGKSSQT----VAVHHPQYGFSVQGEY-----QGRVLFKNYSLNDATI 76 (308)
T ss_dssp CCSCEEETTSCEEECCBCCCSSCEEEEEEEEESSSCEEE----EEEECSSSCEEECTTT-----TTTEEESCCSSSBCCE
T ss_pred CCEeEEEcCCcEEEEEEecCCCCCcEEEEEECCCCCCce----EEEecCCCCceecCcc-----cceEEeeccCCCceEE
Confidence 345566899999999998765554689999865432211 000000 00000000 1122111 23579
Q ss_pred EEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEe-ecCCCCceE
Q psy14542 177 IIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSA-QGNPLPTIK 255 (371)
Q Consensus 177 ~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~v~ 255 (371)
.|.+++.+| +|.|+|.+.+...+...... .+.+... ..+.....+.... ...|+.+.|.|.+ .|.|.+.+.
T Consensus 77 ~I~~v~~~D-~G~Y~C~a~n~~~~~~~~~~---~~~v~~~---~~~~~~~~~~~~~-~~~~~~~~l~C~~~~g~P~~~i~ 148 (308)
T 4fom_A 77 TLHNIGFSD-SGKYICKAVTFPLGNAQSST---TVTVLVE---PTVSLIKGPDSLI-DGGNETVAAICIAATGKPVAHID 148 (308)
T ss_dssp EECSCCGGG-CEEEEEEEEETTTEEEEEEE---EEEEEBC---CEEEEEECSSCCC-TTCSCEEEEEEEEEEEBSCCEEE
T ss_pred EEccCCHHH-CEEEEEEEeeCCCcceeeee---EEEeeec---cccccccccceeE-EcCCceEEEEEEecCCcCCceEE
Confidence 999999999 99999999886345544444 5555522 1112222233333 5677899999985 579999999
Q ss_pred EEeCCcccccCCceE-----EecceEEEeccCCCCCeEEEEEEEcCCCCc--eeEEEEEEecCcccccccceEEEEeeee
Q psy14542 256 WYKQDSPVEESDRIQ-----RIGSSLSISHVEESDSGVWNCVANNSEGQD--KMQLFIQYAHGKYHMLSSGELIIHQVDE 328 (371)
Q Consensus 256 W~~~~~~~~~~~~~~-----~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~--~~~~~l~v~~~p~~~~~~~~~~~~~~~~ 328 (371)
|++++..+....... ...+.|.|..+..+|+|.|+|.|.|..|.. ..++.|.|..+|. +. +..
T Consensus 149 W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~P~---------~~-~~~ 218 (308)
T 4fom_A 149 WEGDLGEMESTTTSFPNETATIISQYKLFPTRFARGRRITCVVKHPALEKDIRYSFILDIQYAPE---------VS-VTG 218 (308)
T ss_dssp ECCCSSBCCEEEEECTTSCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCCCEEEE---------EC-CBC
T ss_pred EEECCcccccccceeeeecccccccceEEeeeecCCccEEEEEEccCCCCceEEeEEEEEecCCe---------eE-Ecc
Confidence 999998876543221 223469999999999999999999988765 4455666666776 43 111
Q ss_pred ccccccccccccccceeeeeecCCeEEEeeeeecCCCC-ccccC
Q psy14542 329 KNKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLP-TIKYR 371 (371)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p-~i~W~ 371 (371)
+.. ..+.+|+.++|.|.+.|+|+| .++|+
T Consensus 219 ~~~--------------~~~~~g~~v~l~C~~~g~P~p~~v~W~ 248 (308)
T 4fom_A 219 YDG--------------NWFVGRKGVNLKCNADANPPPFKSVWS 248 (308)
T ss_dssp CCS--------------CEETTCCSCEEECCEEEESCEEEEECC
T ss_pred cce--------------eeeeccccEEEEEEEecCCCCcEEEEE
Confidence 111 156688999999999999998 69996
No 99
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Probab=99.92 E-value=1.7e-23 Score=167.29 Aligned_cols=191 Identities=26% Similarity=0.376 Sum_probs=138.0
Q ss_pred ceeeEecCCcee-eecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccc
Q psy14542 96 ELVEIASSNQVV-VDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSG 174 (371)
Q Consensus 96 ~~~~~~~~~~~~-~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~ 174 (371)
.+|.+...+... +.+|+.+.|.|.+.+.+. +.+.|++++..+............ + ...
T Consensus 5 ~~P~~~~~p~~~~v~~G~~v~L~C~~~g~p~-~~v~W~k~~~~~~~~~~~~~~~~~---------------~-----~~~ 63 (212)
T 2yd6_A 5 TPPRFTRTPVDQTGVSGGVASFICQATGDPR-PKIVWNKKGKKVSNQRFEVIEFDD---------------G-----SGS 63 (212)
T ss_dssp EEEEEEECCCCEEEETTSCEEEEEEEEEESC-CEEEEEETTEECCCTTEEEEEEGG---------------G-----TEE
T ss_pred CCCeEEeCcceeEEecCCeEEEEEEEeeCCC-CEEEEEECCcCCCCCceeEEEEcC---------------C-----Cce
Confidence 455555555443 489999999999998777 899999999887654322111110 0 125
Q ss_pred eEEEEEee-cCCccceeEEEeeccccceeeeeeccceeeeecchh--ccccceeeeeeeeeeeecCCeEEEEEEeecCCC
Q psy14542 175 ELIIHQVD-ESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKR--LLSAAKMFEKHRILNVKKDESVILPCSAQGNPL 251 (371)
Q Consensus 175 ~l~i~~~~-~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~--~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~ 251 (371)
.|.|.++. .+| +|.|+|.+.+. .+...... .|.|..... ...|.+...+.... +..|+.+.|.|.+.|.|.
T Consensus 64 ~L~i~~v~~~~d-~G~Y~C~a~n~-~g~~~~~~---~l~V~~~~~~~~~~p~~~~~~~~~~-~~~g~~v~l~C~~~g~p~ 137 (212)
T 2yd6_A 64 VLRIQPLRTPRD-EAIYECVASNN-VGEISVST---RLTVLREDQIPRGFPTIDMGPQLKV-VERTRTATMLCAASGNPD 137 (212)
T ss_dssp EEEECSCCTTTT-CEEEEEEEEET-TEEEEEEE---EEEEECGGGCCTTCCEEEECCCCEE-EETTSCEEEEEEEECSSC
T ss_pred EEEEeccCCCCC-CeEEEEEEEcC-CCcEEEEE---EEEEeccCccCCCcceeecCCccee-EecCCCEEEEEEecCCCC
Confidence 69999994 999 99999999998 66666555 777764321 12255555555555 889999999999999999
Q ss_pred CceEEEeCCcccccC---CceEE----ecceEEEeccCCCCCeEEEEEEEcCCCCc-eeEEEEEEecCcc
Q psy14542 252 PTIKWYKQDSPVEES---DRIQR----IGSSLSISHVEESDSGVWNCVANNSEGQD-KMQLFIQYAHGKY 313 (371)
Q Consensus 252 ~~v~W~~~~~~~~~~---~~~~~----~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~v~~~p~ 313 (371)
+.+.|++++..+... .++.. ..+.|.|.++..+|+|.|+|.|.|..|.. +..+.|.|..++.
T Consensus 138 p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~s~~a~l~~~~~~~ 207 (212)
T 2yd6_A 138 PEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVRGTKH 207 (212)
T ss_dssp CEEEEEETTEEC------CCEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC---
T ss_pred CeEEEEECCccccCcCCCceEEEEecCCeEEEEEcCCCcccCEEEEEEEECCCCccccccccEEEEeccc
Confidence 999999999987654 33332 13689999999999999999999999986 4557787776665
No 100
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A
Probab=99.92 E-value=1.3e-23 Score=165.19 Aligned_cols=162 Identities=22% Similarity=0.397 Sum_probs=129.5
Q ss_pred cceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEe-CCEEEeeC-----------CeeEEEEccCCcCCCeEEEEE
Q psy14542 10 SLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLK-DGLVLRRN-----------SDEVLVLDRVQREDAGMYQCH 77 (371)
Q Consensus 10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~-~~~~~~~~-----------~~~~l~i~~~~~~d~G~Y~C~ 77 (371)
++++.+.|.. ..+.+|++++|.|.+....+.+.+.|++ ++..+... ....|.|.+++.+|+|.|+|.
T Consensus 2 p~~v~~~p~~-~~v~~G~~v~l~C~~~~~~~~~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 80 (191)
T 1epf_A 2 VLQVDIVPSQ-GEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCV 80 (191)
T ss_dssp -CCEEEESSS-EEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEE
T ss_pred ceEEEecCCC-cEEcCCCCEEEEEECCCCCCCceEEEEeCCCccccCCCCeEEEEECCCCceEEEEccCCcccCEEEEEE
Confidence 5678888888 8999999999999665544578999999 88777632 457899999999999999999
Q ss_pred EEcCC-CCeEEEEEEEEecceeeEecCC-ceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCC
Q psy14542 78 VSADD-DSAQMSAQVILGGELVEIASSN-QVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQRED 155 (371)
Q Consensus 78 ~~~~~-~~~~~~~~l~v~~~~~~~~~~~-~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~ 155 (371)
+.+.. +.....+.|.|. .++.+...+ ...+.+|+.+.|.|.+.+.|. +.+.|++++..+....
T Consensus 81 ~~~~~~~~~~~~~~l~v~-~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~-~~v~W~~~~~~~~~~~------------- 145 (191)
T 1epf_A 81 VTAEDGTQSEATVNVKIF-QKLMFKNAPTPQEFKEGEDAVIVCDVVSSLP-PTIIWKHKGRDVILKK------------- 145 (191)
T ss_dssp EEETTTEEEEEEEEEEEE-CCSEEEECCSSEECCTTSCEEECCEEECSSC-CEEEEEETTEEGGGGC-------------
T ss_pred EEcCCCcceEEEEEEEee-cCceEecCCCcEeecCCCeEEEEEEECCCCC-CEEEEEECCEEeeccC-------------
Confidence 99887 445677888888 555555444 344589999999999998887 8899999998875432
Q ss_pred CeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeecc
Q psy14542 156 AGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNK 197 (371)
Q Consensus 156 ~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~ 197 (371)
+.++....+..|.|.++..+| .|.|+|.+.|.
T Consensus 146 ---------~~~~~~~~~~~L~i~~~~~~d-~G~Y~C~a~n~ 177 (191)
T 1epf_A 146 ---------DVRFIVLSNNYLQIRGIKKTD-EGTYRCEGRIL 177 (191)
T ss_dssp ---------CTTEEECTTSCEEETTCCGGG-CEEEEEEEEEG
T ss_pred ---------CceEEEecCCeEEECCCChhh-CEEEEEEEEEe
Confidence 123444445689999999999 99999999998
No 101
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*
Probab=99.92 E-value=2e-24 Score=181.30 Aligned_cols=209 Identities=16% Similarity=0.193 Sum_probs=146.9
Q ss_pred ceeeEecCCce-eeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccc
Q psy14542 96 ELVEIASSNQV-VVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSG 174 (371)
Q Consensus 96 ~~~~~~~~~~~-~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~ 174 (371)
++|.+...+.. .+.+|+.++|.|.+.+ .+.|++++....... ......
T Consensus 3 p~p~i~~~~~~~~v~~G~~v~L~C~~~~-----~v~W~~~~~~~~~~~--------------------------~~~~~~ 51 (289)
T 3ejj_X 3 PAPVIEPSGPELVVEPGETVTLRCVSNG-----SVEWDGPISPYWTLD--------------------------PESPGS 51 (289)
T ss_dssp -CCEEESCSSEEEECTTCCEEEEEECSS-----CCEEECSCSSSSEEC--------------------------CCSSCC
T ss_pred CCcEecCCCceEEECCCCCEEEEEEeCC-----cEEEccCCCceEEEe--------------------------ccCCcc
Confidence 34555555444 4489999999999876 489997654211100 001126
Q ss_pred eEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccc-eeeeeeeeeeeecCCeEEEEEEeecCCCCc
Q psy14542 175 ELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAA-KMFEKHRILNVKKDESVILPCSAQGNPLPT 253 (371)
Q Consensus 175 ~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~-~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~ 253 (371)
.|.|.+++..| .|.|+|.+.+. .+...... .|.|. .+|. +...+.... +..|+.+.|.|.+.+.+.+.
T Consensus 52 ~L~i~~~~~~d-~G~Y~C~~~~~-~~~~~~~~---~l~V~-----~~~~~~~~~~~~~~-v~~g~~v~L~C~~~~~~~~~ 120 (289)
T 3ejj_X 52 TLTTRNATFKN-TGTYRCTELED-PMAGSTTI---HLYVK-----DPAHSWNLLAQEVT-VVEGQEAVLPCLITDPALKD 120 (289)
T ss_dssp EEEESSCCGGG-CEEEEEECCC------CEEE---EEEEC-----CSSCSEEESCSEEE-EETTSCEEECEEESCGGGGG
T ss_pred EEEEeeecccc-CEEEEEEEecc-CCcceeEE---EEEEe-----CCCcceecccceEE-EecCCceEeEEEccCCCcce
Confidence 89999999999 99999999987 55555555 67776 3333 344444455 89999999999999876665
Q ss_pred -eEEEe-CCcccccCCceE-EecceEEEeccCCCCCeEEEEEEE-cCCCCceeEEEEEEec----CcccccccceEEEEe
Q psy14542 254 -IKWYK-QDSPVEESDRIQ-RIGSSLSISHVEESDSGVWNCVAN-NSEGQDKMQLFIQYAH----GKYHMLSSGELIIHQ 325 (371)
Q Consensus 254 -v~W~~-~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~a~-n~~g~~~~~~~l~v~~----~p~~~~~~~~~~~~~ 325 (371)
+.|++ ++..+....++. ..++.|.|.++..+|+|.|+|.|. +..+.....+.|.|.. +|. +.
T Consensus 121 ~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~~l~V~~~~~~~p~---------i~- 190 (289)
T 3ejj_X 121 SVSLMREGGRQVLRKTVYFFSPWRGFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRVHPEPPQ---------IK- 190 (289)
T ss_dssp SEEEEEGGGEECCTTCCEEEETTTEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEESSCCCCCE---------EE-
T ss_pred EEEEEecCCeecCCCccEEECCCCCEEEeecccccCEEEEEEEEeCCCccccccEEEEEEECCCCCCe---------EE-
Confidence 99986 566666665555 345689999999999999999999 5566667778888874 444 33
Q ss_pred eeeccccccccccccccceeeeeecCCeEEEeeeeec-CCCCccccC
Q psy14542 326 VDEKNKRLLSAAKMFEKHRILNVKKDESVILPCSAQG-NPLPTIKYR 371 (371)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g-~p~p~i~W~ 371 (371)
..|.. ..+.+|+.+.|.|.+.| .|+|.++|+
T Consensus 191 -~~~~~--------------~~~~~g~~~~l~C~~~~~~p~~~i~W~ 222 (289)
T 3ejj_X 191 -LEPSK--------------LVRIRGEAAQIVCSATNAEVGFNVILK 222 (289)
T ss_dssp -EESSS--------------EECCSSSCEEEEEEEEESSSCCEEEEE
T ss_pred -ecCCc--------------eEEEeCCcEEEEEEeCCCCCceEEEEE
Confidence 22221 25578999999999999 788999995
No 102
>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R
Probab=99.92 E-value=5.6e-24 Score=180.68 Aligned_cols=227 Identities=13% Similarity=0.204 Sum_probs=149.1
Q ss_pred eeeecCCcEEEEEEecCCCCCc----eEEEeeCCEEeeeCCeeEEEEcc--cCcCCCeeEEEEEeCCceeEeccceEEEE
Q psy14542 106 VVVDVGHRIELHCRVSPKRLSS----AKAWLKDGLVLRRNSDEVLVLDR--VQREDAGMYQCHIEDGKYHMLSSGELIIH 179 (371)
Q Consensus 106 ~~~~~g~~v~l~C~~~~~~~~~----~v~W~~~~~~~~~~~~~~~~~~~--~~~~~~g~y~~~~~~~~~~~~~~~~l~i~ 179 (371)
.....|++++|.|.+.+.+.+. .+.|+|++...... ..... ........+.... ........+.+|.|.
T Consensus 10 v~~~~G~~v~L~C~v~~~~~~~~~~~~V~W~k~~~~~~~~----~~~~~~~~~~~~~~r~~~~~-~~~~~~~~~~sL~I~ 84 (313)
T 4fqp_A 10 VPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMA----VFHQTQGPSYSESKRLEFVA-ARLGAELRNASLRMF 84 (313)
T ss_dssp ECCBTTSCEEECCEEECCTTSCCCCCEEEEEETTSSSCSE----EEETTTEEEESSTTTEEESS-CCTTSCCCBCCEEEC
T ss_pred EEEecCCCEEEEEEEECCCCCccceEEEEEEECCCCcceE----EEecCCCceeccCcceEEEe-eccCCcccceEEEEC
Confidence 3347899999999998765522 58999987532110 00000 0000000000000 000011123579999
Q ss_pred EeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEee-cCCCCceEEEe
Q psy14542 180 QVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQ-GNPLPTIKWYK 258 (371)
Q Consensus 180 ~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~-~~p~~~v~W~~ 258 (371)
+++.+| +|.|+|.+.+...+...... .|.+. .+|.+........ +..++.+.+.|.+. +.|.+.+.|++
T Consensus 85 ~v~~~D-~G~Y~C~v~~~~~~~~~~~~---~l~v~-----~~P~~~~~~~~~~-~~~~~~~~~~C~~~~~~P~~~i~W~~ 154 (313)
T 4fqp_A 85 GLRVED-EGNYTCLFVTFPQGSRSVDI---WLRVL-----AKPQNTAEVQKVQ-LTGEPVPMARCVSTGGRPPAQITWHS 154 (313)
T ss_dssp SCCGGG-CEEEEEEEECSSSCEEEEEE---EECCB-----BCCEEEEEECCBC-CCSSCEEEEEEEEEEEBSCCEEEEEE
T ss_pred cCChhh-CEEEEEEEeeccCcceeeee---eeeec-----cCCcceecccceE-eecCceEEEEEEccCccCCcEEEeec
Confidence 999999 99999988654245555544 66666 5666666655555 77888899999865 68999999999
Q ss_pred CCcccccCCceE-------EecceEEEeccCCCCCeEEEEEEEcCCCCc--eeEEEEEEecCcccccccceEEEEeeeec
Q psy14542 259 QDSPVEESDRIQ-------RIGSSLSISHVEESDSGVWNCVANNSEGQD--KMQLFIQYAHGKYHMLSSGELIIHQVDEK 329 (371)
Q Consensus 259 ~~~~~~~~~~~~-------~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~--~~~~~l~v~~~p~~~~~~~~~~~~~~~~~ 329 (371)
++..+....... ...+.|.|.....+|+|.|+|.|.|..+.. ..++.|.|..+|. +. +..+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~P~---------v~-~~~~ 224 (313)
T 4fqp_A 155 DLGGMPNTSQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPE---------VS-ISGY 224 (313)
T ss_dssp TTCCEEEEEEEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTSSSCEEEEEECCBCEEEE---------EE-EECC
T ss_pred CCccccccceeeeecccccccceeeeecccccccCeeEEEEEEccCcCccceeeeecccccCCc---------cc-cccc
Confidence 998765443322 112358899999999999999999987765 4455666777777 44 1211
Q ss_pred cccccccccccccceeeeeecCCeEEEeeeeecCCCC-ccccC
Q psy14542 330 NKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLP-TIKYR 371 (371)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p-~i~W~ 371 (371)
.. ..+.+|+.++|.|.+.|+|+| .|+|+
T Consensus 225 ~~--------------~~~~~g~~v~l~C~~~g~P~p~~v~W~ 253 (313)
T 4fqp_A 225 DN--------------NWYLGQNEATLTCDARSNPEPTGYNWS 253 (313)
T ss_dssp CS--------------CEETTCCCEEEEEEEEEESCCCEEEEE
T ss_pred cc--------------eeecCCCeEEEEEEecCCCCCcEEEEE
Confidence 11 145678999999999999999 69995
No 103
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}
Probab=99.92 E-value=5.1e-24 Score=167.12 Aligned_cols=174 Identities=25% Similarity=0.481 Sum_probs=130.6
Q ss_pred CceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeec
Q psy14542 104 NQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDE 183 (371)
Q Consensus 104 ~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~ 183 (371)
....+.+|+.++|.|.+.+.+. +.+.|++++..+.... +.++....+..|.|.+++.
T Consensus 10 ~~~~v~~G~~v~l~C~~~~~p~-~~v~W~~~~~~~~~~~----------------------~~~~~~~~~~~L~i~~~~~ 66 (189)
T 2v5t_A 10 SPQEFKQGEDAEVVCRVSSSPA-PAVSWLYHNEEVTTIS----------------------DNRFAMLANNNLQILNINK 66 (189)
T ss_dssp SSEEEETTSCEEECCEEECSSC-CEEEEEC-----CBCC----------------------CTTEEECTTSCEEETTCCG
T ss_pred CCEEEeCCCcEEEEEEEcCCCC-CEEEEEECCccceecc----------------------CCeEEEecCCCEEEeeCCH
Confidence 3445589999999999988776 8999999987765432 2344445557899999999
Q ss_pred CCccceeEEEeeccccceee-eeeccceeeeecchhccccceeeeee--eeeeeecCCeEEEEEEeecCCCCceEEEeCC
Q psy14542 184 SDRYRSYQCRGVNKLTGASL-LSVNRGRLSLTENKRLLSAAKMFEKH--RILNVKKDESVILPCSAQGNPLPTIKWYKQD 260 (371)
Q Consensus 184 ~d~~g~y~C~~~~~~~~~~~-~~~~~~~l~v~~~~~~~~p~~~~~~~--~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~ 260 (371)
+| .|.|+|.+.+...+... ... .+.+. .+|.+..... ... +..|+.+.|.|.+.+.|.+.+.|++++
T Consensus 67 ~d-~G~Y~C~~~~~~~~~~~~~~~---~l~v~-----~~p~~~~~~~~~~~~-~~~g~~v~l~C~~~g~p~~~v~W~~~g 136 (189)
T 2v5t_A 67 SD-EGIYRCEGRVEARGEIDFRDI---IVIVN-----VPPAISMPQKSFNAT-AERGEEMTFSCRASGSPEPAISWFRNG 136 (189)
T ss_dssp GG-CEEEEEEEEETTTTEEEEEEE---EEEEE-----EEEEEECSCCEEEEE-TTSCCCEEEECEEEEESCCEEEEEETT
T ss_pred hH-CcEEEEEEEEcCCCceEEEEE---EEEec-----CCCCccccccccccc-ccCCCcEEEEEEEccCCCCeEEEEECC
Confidence 99 99999999987323221 222 55555 4455443332 233 788999999999999999999999999
Q ss_pred cccccCCceEEe--cceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEec
Q psy14542 261 SPVEESDRIQRI--GSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAH 310 (371)
Q Consensus 261 ~~~~~~~~~~~~--~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~ 310 (371)
..+....++... ++.|.|.++..+|+|.|+|.|.|..|....++.|.|..
T Consensus 137 ~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~v 188 (189)
T 2v5t_A 137 KLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFV 188 (189)
T ss_dssp EECCCSSSEEEETTTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred EECcCCCcEEEecCCCEEEEcCCChhhCeeEEEEEEeCCCceeEEEEEEEEe
Confidence 988877666533 46899999999999999999999999998888888753
No 104
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Probab=99.92 E-value=2.3e-23 Score=166.46 Aligned_cols=179 Identities=22% Similarity=0.365 Sum_probs=135.1
Q ss_pred cccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC----------CeeEEEEccC-CcCCCeEEEE
Q psy14542 8 KSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN----------SDEVLVLDRV-QREDAGMYQC 76 (371)
Q Consensus 8 ~~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~----------~~~~l~i~~~-~~~d~G~Y~C 76 (371)
..+|.+...|.. ..+.+|+.+.|.|.+. +.|.+.+.|++++..+... ....|.|.++ +.+|+|.|+|
T Consensus 4 ~~~P~~~~~p~~-~~v~~G~~v~L~C~~~-g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C 81 (212)
T 2yd6_A 4 ETPPRFTRTPVD-QTGVSGGVASFICQAT-GDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYEC 81 (212)
T ss_dssp CEEEEEEECCCC-EEEETTSCEEEEEEEE-EESCCEEEEEETTEECCCTTEEEEEEGGGTEEEEEECSCCTTTTCEEEEE
T ss_pred CCCCeEEeCcce-eEEecCCeEEEEEEEe-eCCCCEEEEEECCcCCCCCceeEEEEcCCCceEEEEeccCCCCCCeEEEE
Confidence 456888888888 8999999999999654 6778899999999887653 3467999999 5999999999
Q ss_pred EEEcCCCCeEEEEEEEEecc------eeeEecCCce-eeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEc
Q psy14542 77 HVSADDDSAQMSAQVILGGE------LVEIASSNQV-VVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLD 149 (371)
Q Consensus 77 ~~~~~~~~~~~~~~l~v~~~------~~~~~~~~~~-~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~ 149 (371)
.+.+..+.....+.|.|... .|.+...+.. .+..|+.+.|.|.+.+.|. +.+.|++++..+......
T Consensus 82 ~a~n~~g~~~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~-p~v~W~~~g~~l~~~~~~----- 155 (212)
T 2yd6_A 82 VASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPD-PEITWFKDFLPVDTSNNN----- 155 (212)
T ss_dssp EEEETTEEEEEEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEEEEEEECSSC-CEEEEEETTEEC-----------
T ss_pred EEEcCCCcEEEEEEEEEeccCccCCCcceeecCCcceeEecCCCEEEEEEecCCCC-CeEEEEECCccccCcCCC-----
Confidence 99998888778888888732 1445544443 4488999999999998887 899999999887654210
Q ss_pred ccCcCCCeeEEEEEeCCceeEe---ccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeee
Q psy14542 150 RVQREDAGMYQCHIEDGKYHML---SSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLT 214 (371)
Q Consensus 150 ~~~~~~~g~y~~~~~~~~~~~~---~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~ 214 (371)
.++... ....|.|.++..+| .|.|+|.|.|. .|....+. +.+.|.
T Consensus 156 ----------------~~~~~~~~~~~~~L~i~~~~~~d-~G~Y~C~a~N~-~G~~~s~~--a~l~~~ 203 (212)
T 2yd6_A 156 ----------------GRIKQLRSESIGALQIEQSEESD-QGKYECVATNS-AGTRYSAP--ANLYVR 203 (212)
T ss_dssp ----------------CCEEEEEETTEEEEEECSCCGGG-CEEEEEEEEET-TEEEECCC--EEEEEE
T ss_pred ----------------ceEEEEecCCeEEEEEcCCCccc-CEEEEEEEECC-CCcccccc--ccEEEE
Confidence 011111 12689999999999 99999999999 66544332 155555
No 105
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A
Probab=99.92 E-value=1.9e-23 Score=165.05 Aligned_cols=176 Identities=18% Similarity=0.238 Sum_probs=136.6
Q ss_pred ccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC-----------CeeEEEEccCCcCCCeEEEEE
Q psy14542 9 SSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN-----------SDEVLVLDRVQREDAGMYQCH 77 (371)
Q Consensus 9 ~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~-----------~~~~l~i~~~~~~d~G~Y~C~ 77 (371)
.+|.+...|.. ..+.+|+.+.|.|.+ .+.|.+.+.|++++..+... ....|.|.+++.+|+|.|+|.
T Consensus 3 ~~P~~~~~~~~-~~v~~G~~v~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~ 80 (197)
T 2j8h_A 3 MAPHFKEELRN-LNVRYQSNATLVCKV-TGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVR 80 (197)
T ss_dssp CCCEEEECCCC-EEEETTSCEEEEEEE-ECSSCCEEEEEETTEECCCCSSSEEEEEETTTEEEEEECSCCGGGCSEEEEE
T ss_pred CCCEEEEcCCc-cEEcCCCEEEEEEEE-eecCCCEEEEEECCEECccCCCcEEEEEcCCCEEEEEECcCCHHhCEEEEEE
Confidence 46788888877 999999999999965 46778899999999877643 223899999999999999999
Q ss_pred EEcCCCCeEEEEEEEEecceeeEecCC------ceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEccc
Q psy14542 78 VSADDDSAQMSAQVILGGELVEIASSN------QVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRV 151 (371)
Q Consensus 78 ~~~~~~~~~~~~~l~v~~~~~~~~~~~------~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~ 151 (371)
+.+..+.....+.|.|. .++.+.... ...+.+|+.+.|.|.+.+.|. +.+.|++++..+.....+.+...
T Consensus 81 ~~n~~g~~~~~~~l~V~-~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~-p~i~W~~~~~~~~~~~~~~~~~~-- 156 (197)
T 2j8h_A 81 ATNQGGSVSGTASLEVE-VPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPD-PVITWQKGQDLIDNNGHYQVIVT-- 156 (197)
T ss_dssp EEETTEEEEEEEEEEEE-EEEEECCSSCBTTBEEEEEETTCCCEEEEEEEEESC-CEEEEEESSCEECSSSSCEEEEC--
T ss_pred EEECCCceeEEEEEEEc-CCCcCCCCccccccCeEEEeCCCEEEEEEEEEecCC-CcEEEEECCEEeecCCCEEEEEc--
Confidence 99988877888888887 455443322 223478999999999998887 89999999988765433221110
Q ss_pred CcCCCeeEEEEEeCCceeEeccceEEEEE-eecCCccceeEEEeeccccceeeeeeccceeeee
Q psy14542 152 QREDAGMYQCHIEDGKYHMLSSGELIIHQ-VDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLT 214 (371)
Q Consensus 152 ~~~~~g~y~~~~~~~~~~~~~~~~l~i~~-~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~ 214 (371)
.....|.|.+ +..+| .|.|+|.+.|. .|...... .|.|.
T Consensus 157 -------------------~~~~~L~i~~~~~~~d-~G~Y~C~a~N~-~g~~~~~~---~l~V~ 196 (197)
T 2j8h_A 157 -------------------RSFTSLVFPNGVERKD-AGFYVVCAKNR-FGIDQKTV---ELDVA 196 (197)
T ss_dssp -------------------SSEEEEECTTCCCGGG-CEEEEEEEEET-TEEEEEEE---EEEEE
T ss_pred -------------------CCceEEEEeCCCCccc-CEeEEEEEEeC-CCcEeEEE---EEEEe
Confidence 0125788999 99999 99999999999 77766655 66554
No 106
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*
Probab=99.92 E-value=1.2e-23 Score=166.75 Aligned_cols=168 Identities=16% Similarity=0.258 Sum_probs=128.9
Q ss_pred cccceEEEeCCCcEEEeccCcEEEEEEecCCCCCC-eeEEEeCCEEEeeCCeeEEEEccCCcCCCeEEEEEEEcCCCCeE
Q psy14542 8 KSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSS-AKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHVSADDDSAQ 86 (371)
Q Consensus 8 ~~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~-~~~W~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~ 86 (371)
.++|.+.+.|.. ..+.+|++++|.|.+. +.+.+ .+.|+|++..+.. ....|.|.+++.+|+|.|+|.+.+. ...
T Consensus 5 ~p~p~i~~~p~~-~~v~~G~~v~L~C~~~-~~p~~~~v~W~k~g~~l~~-~~~~L~i~~v~~~D~G~Y~C~a~n~--~~s 79 (204)
T 3sgj_C 5 LPKAVVFLEPQW-YRVLEKDSVTLKCQGA-YSPEDQSTQWFHNESLISS-QASSYFIDAATVDDSGEYRCQTQLS--TLS 79 (204)
T ss_dssp -CBCEEEEESCC-SEEETTCCEEEEEECC-SSSSCCCEEEEETTEEESC-CSSEEEESSCCGGGCEEEEEEETTS--BCC
T ss_pred CCCCeEEEcCCC-eEEECCCCEEEEEcCC-CCCCCcEEEEEECCEEccc-CccEEEEecccccCCEEEEEEeCCC--ccc
Confidence 567889999997 7899999999999654 44444 4999999998876 4589999999999999999999874 334
Q ss_pred EEEEEEEecceeeEecCCceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCC
Q psy14542 87 MSAQVILGGELVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDG 166 (371)
Q Consensus 87 ~~~~l~v~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~ 166 (371)
..+.|.|. .++.+...+...+.+|+.++|.|.+.+.++.+.+.|++++..+....
T Consensus 80 ~~~~l~V~-~~p~~~~~~~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~~~~------------------------ 134 (204)
T 3sgj_C 80 DPVQLEVH-IGWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKYFH------------------------ 134 (204)
T ss_dssp CCEEEEEE-CSSEEEECSCSEEETTCCEEEEEEEGGGCCCEEEEEEETTEEEEEEE------------------------
T ss_pred ccEEEEEe-cCceEecCCceeEeCCCcEEEEEEecCCCCCceEEEEECCcEeeccc------------------------
Confidence 55677777 44455555556668999999999996654448999999998764321
Q ss_pred ceeEeccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeee
Q psy14542 167 KYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLT 214 (371)
Q Consensus 167 ~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~ 214 (371)
.+..|.|.++..+| .|.|+|.+.|...+...... .|.|.
T Consensus 135 -----~~~~L~i~~v~~~D-~G~Y~C~a~n~~~~~~s~~~---~l~V~ 173 (204)
T 3sgj_C 135 -----HNSDFYIPKATLKD-SGSYFCRGLVGSKNVSSETV---QITIT 173 (204)
T ss_dssp -----ECCCEEESSCCGGG-CEEEEEEEEETTEEEECCCE---EEEEE
T ss_pred -----CCceEEECcCCccc-CEEEEEEEEeCCCceecCcE---EEEEe
Confidence 12679999999999 99999999995233433333 56665
No 107
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Probab=99.92 E-value=1.6e-23 Score=162.01 Aligned_cols=154 Identities=16% Similarity=0.240 Sum_probs=122.5
Q ss_pred cccceEEEeCCCcEEEeccCcEEEEEEecCCCCCC-eeEEEeCCEEEeeCCeeEEEEccCCcCCCeEEEEEEEcCCCCeE
Q psy14542 8 KSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSS-AKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHVSADDDSAQ 86 (371)
Q Consensus 8 ~~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~-~~~W~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~ 86 (371)
.++|.+.+.|.. ..+.+|++++|.|.+. +.+.+ .+.|++++..+.. ....|.|.+++.+|+|.|+|.+.+..+ .
T Consensus 5 ~~~p~i~~~p~~-~~v~~G~~v~L~C~~~-~~p~~~~~~W~~~~~~~~~-~~~~L~i~~~~~~d~G~Y~C~~~n~~~--s 79 (175)
T 1fnl_A 5 LPKAVVFLEPQW-YSVLEKDSVTLKCQGA-YSPEDNSTQWFHNESLISS-QASSYFIDAATVNDSGEYRCQTNLSTL--S 79 (175)
T ss_dssp CCCCEEEEESCC-SEEETTCCEEEEEECC-CBTTBCCCEEEETTEEEES-SCSEEEESSCCGGGCEEEEEECSSSCC--C
T ss_pred CCCCEEEEcCCc-eeeeCCCcEEEEeeCC-CCCCCcceEEEECCEEccC-CceEEEEeCCCcccCEEEEEEeeCCcc--c
Confidence 467889999987 8899999999999654 44444 4899999998875 677999999999999999999987544 4
Q ss_pred EEEEEEEecceeeEecCCceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCC
Q psy14542 87 MSAQVILGGELVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDG 166 (371)
Q Consensus 87 ~~~~l~v~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~ 166 (371)
..+.|.|.. ++.....+...+.+|+.+.|.|.+.+.++.+.+.|++++..+....
T Consensus 80 ~~~~l~V~~-~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~k~g~~~~~~~------------------------ 134 (175)
T 1fnl_A 80 DPVQLEVHI-GWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYFH------------------------ 134 (175)
T ss_dssp CCEEEEEEC-SSEEEECSCSEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEEEE------------------------
T ss_pred ccEEEEEeC-CCceeeCCCceecCCCCEEEEEEcCCCCCceEEEEEECCeEccCCC------------------------
Confidence 456666663 3333444455568999999999998876646999999998774321
Q ss_pred ceeEeccceEEEEEeecCCccceeEEEeecc
Q psy14542 167 KYHMLSSGELIIHQVDESDRYRSYQCRGVNK 197 (371)
Q Consensus 167 ~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~ 197 (371)
.+..|.|.+++.+| .|.|+|.+.|.
T Consensus 135 -----~~~~L~i~~v~~~d-~G~Y~C~a~n~ 159 (175)
T 1fnl_A 135 -----HNSDFHIPKATLKD-SGSYFCRGLVG 159 (175)
T ss_dssp -----ECCCEEESSCCGGG-CEEEEEEEEET
T ss_pred -----CCCEEEEcccChhh-CeEEEEEEEcC
Confidence 12679999999999 99999999996
No 108
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A
Probab=99.92 E-value=4e-23 Score=165.11 Aligned_cols=175 Identities=20% Similarity=0.334 Sum_probs=137.6
Q ss_pred cccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC-----------CeeEEEEccCCc-CCCeEEE
Q psy14542 8 KSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN-----------SDEVLVLDRVQR-EDAGMYQ 75 (371)
Q Consensus 8 ~~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~-----------~~~~l~i~~~~~-~d~G~Y~ 75 (371)
..+|.+...|.. ..+.+|++++|.|.+ .+.|.+.+.|++++..+... ....|.|.+++. +|+|.|+
T Consensus 4 ~~pP~~~~~p~~-~~v~~G~~v~l~C~~-~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~ 81 (212)
T 2yd1_A 4 AHPPEIIRKPQN-QGVRVGGVASFYCAA-RGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYE 81 (212)
T ss_dssp -CCCEEEECCCC-EEEETTSCEEEEEEE-ECSSCCEEEEEETTEECCTTSTTEEEEEETTTEEEEEESSCCTTTTCSEEE
T ss_pred CCCCEEEcCCCc-eEEecCCEEEEEEEE-ccCCCCeEEEEECCEECCCCcceeEEEEcCCCeEEEEEEecCCCCcCceEE
Confidence 357888888888 899999999999965 46778899999999887522 236899999999 9999999
Q ss_pred EEEEcCCCC-eEEEEEEEEecce------eeEecCCce-eeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEE
Q psy14542 76 CHVSADDDS-AQMSAQVILGGEL------VEIASSNQV-VVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLV 147 (371)
Q Consensus 76 C~~~~~~~~-~~~~~~l~v~~~~------~~~~~~~~~-~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~ 147 (371)
|.+.+..+. ....+.|.|...+ |.+...+.. .+..|+.+.|.|.+.+.+. +.+.|++++..+.....
T Consensus 82 C~~~n~~g~~~~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~-p~i~W~~~~~~~~~~~~---- 156 (212)
T 2yd1_A 82 CVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPT-PNIYWIKNQTKVDMSNP---- 156 (212)
T ss_dssp EEEECSSSCEEEEEEEEEEECTTCSCTTCCEEEECCCCEEEETTCCEEECCEEECSSC-CEEEEEETTEECCTTST----
T ss_pred EEEEeCCCCeEEeeEEEEEecccCCCCCCCeeEeCCCceEeecCCeEEEEEEeccCCC-CeEEEEECCeEcccCCC----
Confidence 999998888 6778888887321 455544433 4478999999999998887 89999999988765321
Q ss_pred EcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeee-eccceeeee
Q psy14542 148 LDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLS-VNRGRLSLT 214 (371)
Q Consensus 148 ~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~-~~~~~l~v~ 214 (371)
++. ..++.|.|.++..+| .|.|+|.+.|. .|..... + .|.|.
T Consensus 157 -------------------~~~-~~~~~L~i~~v~~~d-~G~Y~C~a~N~-~G~~~s~~~---~l~V~ 199 (212)
T 2yd1_A 157 -------------------RYS-LKDGFLQIENSREED-QGKYECVAENS-MGTEHSKAT---NLYVK 199 (212)
T ss_dssp -------------------TEE-EETTEEEECSCCGGG-CEEEEEEEEET-TEEEECCCE---EEEEE
T ss_pred -------------------eEE-ccCCeEEEccCChhh-CEEEEEEeecC-CCceeEEEE---EEEEE
Confidence 111 223689999999999 99999999998 6665433 4 67776
No 109
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A
Probab=99.92 E-value=4.1e-24 Score=183.02 Aligned_cols=225 Identities=16% Similarity=0.240 Sum_probs=148.8
Q ss_pred eeeecCCcEEEEEEecCCC---CCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEe----ccceEEE
Q psy14542 106 VVVDVGHRIELHCRVSPKR---LSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHML----SSGELII 178 (371)
Q Consensus 106 ~~~~~g~~v~l~C~~~~~~---~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~----~~~~l~i 178 (371)
..+.+|++++|.|.+.+.+ ....+.|++++..... .+..... ..+........+++.+. .+..|.|
T Consensus 24 ~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~~~~~----~i~~~~~---~~~~~~~~~~~~r~~~~~~~~~~~~L~I 96 (331)
T 3u83_A 24 MYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQ----NVAIYNP---SMGVSVLAPYRERVEFLRPSFTDGTIRL 96 (331)
T ss_dssp EEEETTCCEEECCBCSSCCSSCEEEEEEEEEEETTEEE----EEEEEET---TTEEEECTTCTTTEEESSCSSSBCCEEE
T ss_pred EEEEecCCEEEeeecCCCCCCCceEEEEEEEcCCCCCc----eEEEEec---cCCCCcCcccCCceEecccCCCCceEEE
Confidence 3458999999999998762 2268999994321110 0000000 00000000001233322 3467999
Q ss_pred EEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceee--eeeeeeeeecC---CeEEEEEE-eecCCCC
Q psy14542 179 HQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMF--EKHRILNVKKD---ESVILPCS-AQGNPLP 252 (371)
Q Consensus 179 ~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~--~~~~~~~~~~g---~~~~l~C~-~~~~p~~ 252 (371)
.+++.+| +|.|+|.+.+...+...... .|.|. .+|.+.. ...... +..| +.+.|.|. +.+.|.+
T Consensus 97 ~~v~~~D-~G~Y~C~~~~~~~~~~~~~~---~l~V~-----~~p~~~~~~~~~~~~-~~~g~~~~~~~l~C~~~~~~p~~ 166 (331)
T 3u83_A 97 SRLELED-EGVYICEFATFPTGNRESQL---NLTVM-----AKPTNWIEGTQAVLR-AKKGQDDKVLVATCTSANGKPPS 166 (331)
T ss_dssp CSCCGGG-CEEEEEEEEEETTEEEEEEE---EEEEE-----BCCEEEEEECSSCEE-ECTTCCCCEEEEEEEEEEEBSCC
T ss_pred cccCccc-CcEEEEEEEecCCCccEEEE---EEEEe-----cCCcceeecCCCcee-ecCCCccceEEEEEEecCCcCCc
Confidence 9999999 99999985543255555555 77777 4555432 233333 7777 77999998 7889999
Q ss_pred ceEEEeCCcccccC------CceEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEecCcccccccceEEEEee
Q psy14542 253 TIKWYKQDSPVEES------DRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQV 326 (371)
Q Consensus 253 ~v~W~~~~~~~~~~------~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~ 326 (371)
.+.|++++...... .......+.|.|..+..+|+|.|+|.|.|..|....++.|.|..+|. +. +
T Consensus 167 ~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~l~V~~~P~---------~~-~ 236 (331)
T 3u83_A 167 VVSWETRLKGEAEYQEIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQYEPE---------VT-I 236 (331)
T ss_dssp EEEEEESSCCEEEEEEEECTTSCEEEEEEEEECCCGGGTTCEEEEEEEETTEEEEEEEECCEEEEEE---------EE-E
T ss_pred eEEEEcCCCCccccceeECCCCcEEEEEEEEEEeccccCCCEEEEEEecCCCcceeeEEEEEecCCe---------EE-E
Confidence 99999964322111 11112234688888899999999999999999988999999988887 54 1
Q ss_pred eeccccccccccccccceeeeeecCCeEEEeeeeecCCCCc-cccC
Q psy14542 327 DEKNKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPT-IKYR 371 (371)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~-i~W~ 371 (371)
..+.. ..+.+|+.+.|.|.+.|+|+|. ++|+
T Consensus 237 ~~~~~--------------~~~~~g~~~~l~C~~~g~p~p~~i~W~ 268 (331)
T 3u83_A 237 EGFDG--------------NWYLQRMDVKLTCKADANPPATEYHWT 268 (331)
T ss_dssp ECCCS--------------CCBTTCCCEEEEEEEEEESCCCEEEEE
T ss_pred ecCCC--------------ceEeCCCeEEEEEeCcCCCCCCEEEEE
Confidence 21111 1467899999999999999998 9995
No 110
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Probab=99.91 E-value=4.4e-23 Score=162.88 Aligned_cols=177 Identities=16% Similarity=0.307 Sum_probs=137.5
Q ss_pred cccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC---------CeeEEEEccCCcCCCeEEEEEE
Q psy14542 8 KSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN---------SDEVLVLDRVQREDAGMYQCHV 78 (371)
Q Consensus 8 ~~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~---------~~~~l~i~~~~~~d~G~Y~C~~ 78 (371)
..+|.+...|.. +.+.+|+++.|.|.+ .+.|.+.+.|++++..+... ...+|.|.+++.+|+|.|+|.+
T Consensus 5 ~~~P~~~~~~~~-~~v~~G~~v~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~ 82 (197)
T 3lcy_A 5 GEAPGIRKEMKD-VTTKLGEAAQLSCQI-VGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIA 82 (197)
T ss_dssp CEEEEEEECCCC-EEEETTSEEEEEEEE-EEESCCEEEEEETTEEECCCSSEEEEESSSEEEEEEECCSGGGCEEEEEEE
T ss_pred CCCCcccccCCc-eEEeCCCcEEEEEEE-ecCCCCEEEEEECCEECCCCccEEEEeCCCEEEEEEecCCccCCEEEEEEE
Confidence 457788888887 999999999999965 45778899999999888654 3348999999999999999999
Q ss_pred EcCCCCeEEEEEEEEecceeeEecC----CceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcC
Q psy14542 79 SADDDSAQMSAQVILGGELVEIASS----NQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQRE 154 (371)
Q Consensus 79 ~~~~~~~~~~~~l~v~~~~~~~~~~----~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~ 154 (371)
.+..+.....+.|.|. .+|.+... ....+..|+.+.|.|.+.+.|. +.+.|++++..+.......+...
T Consensus 83 ~n~~~~~~~~~~l~v~-~~p~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~-p~v~W~~~~~~~~~~~~~~~~~~----- 155 (197)
T 3lcy_A 83 TNEVGEVETSSKLLLQ-ATPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPV-PAMTWFHGQKLLQNSENITIENT----- 155 (197)
T ss_dssp ECSSCEEEEEEEEEEE-EEEEECTTSCCCSEEEEETTSCEEEEEEEEEESC-CEEEEEETTEECCCCSSEEEEEC-----
T ss_pred ECCCCceeEEEEEEEE-cCCCCCCCccCCcceeecCCCeEEEEEEEeeeeC-CeeEEeECCEECCCCCceEEEEc-----
Confidence 9988887888888887 44444332 2233478999999999998887 89999999998865543221110
Q ss_pred CCeeEEEEEeCCceeEeccceEEEEEeec-CCccceeEEEeeccccceeeeeeccceeeee
Q psy14542 155 DAGMYQCHIEDGKYHMLSSGELIIHQVDE-SDRYRSYQCRGVNKLTGASLLSVNRGRLSLT 214 (371)
Q Consensus 155 ~~g~y~~~~~~~~~~~~~~~~l~i~~~~~-~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~ 214 (371)
. ....|.|.++.. +| .|.|+|.+.|. .|...... .|.|.
T Consensus 156 ----------~------~~~~L~i~~~~~~~d-~G~Y~C~a~n~-~g~~~~~~---~l~V~ 195 (197)
T 3lcy_A 156 ----------E------HYTHLVMKNVQRKTH-AGKYKVQLSNV-FGTVDAIL---DVEIQ 195 (197)
T ss_dssp ----------S------SEEEEEESSCCHHHH-CEEEEEEEECS-SCEEEEEE---EEEEE
T ss_pred ----------C------CEEEEEEccccchhh-CceEEEEEEcC-cCceEEEE---EEEEe
Confidence 0 115789999985 78 99999999999 77776666 66665
No 111
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}
Probab=99.91 E-value=2.1e-23 Score=170.20 Aligned_cols=180 Identities=20% Similarity=0.293 Sum_probs=132.7
Q ss_pred eeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCC
Q psy14542 106 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESD 185 (371)
Q Consensus 106 ~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d 185 (371)
..+.+|+.+.|.|.+.+.+. +.+.|++++..+...... ...........|.|.+++..|
T Consensus 25 ~~v~~G~~v~L~C~~~~~p~-~~v~W~~~~~~~~~~~~~--------------------~~~~~~~~~~~L~i~~v~~~d 83 (241)
T 3grw_A 25 LAVPAANTVRFRCPAAGNPT-PSISWLKNGREFRGEHRI--------------------GGIKLRHQQWSLVMESVVPSD 83 (241)
T ss_dssp EEEETTSEEEEECCEECSSC-CEEEEEETTEECCGGGST--------------------TCCEEEGGGTEEEECSCCGGG
T ss_pred eEEcCCCeEEEEEEecCCCC-ceeEEEECCcccCCCCcc--------------------cceeeeccceEEEEEeCCccc
Confidence 44589999999999998877 899999999887654211 001111233679999999999
Q ss_pred ccceeEEEeeccccceeeeeeccceeeeecchhccccceee-eeeeeeeeecCCeEEEEEEeecCCCCceEEEe----CC
Q psy14542 186 RYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMF-EKHRILNVKKDESVILPCSAQGNPLPTIKWYK----QD 260 (371)
Q Consensus 186 ~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~-~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~----~~ 260 (371)
.|.|+|.+.+. .+...... .+.|..... .+|.+.. .+.... +..|+.+.|.|.+.+.|.+.+.|++ ++
T Consensus 84 -~G~Y~C~~~~~-~~~~~~~~---~l~V~~~~~-~~~~~~~~~~~~~~-~~~g~~v~L~C~~~~~p~p~v~W~~~~~~~g 156 (241)
T 3grw_A 84 -RGNYTCVVENK-FGSIRQTY---TLDVLERSP-HRPILQAGLPANQT-AVLGSDVEFHCKVYSDAQPHIQWLKHVEVNG 156 (241)
T ss_dssp -CEEEEEEEEET-TEEEEEEE---EEEEECCCC-CCCEEEECTTCSEE-CCTTCCEEEEEEEECSSCCEEEEEEECCSSS
T ss_pred -CEEEEEEEeec-CCceEEEE---EEEEeccCC-CCceeecCCCccce-ecCCCEEEEEEEEecCCCCEEEEEEcccCCC
Confidence 99999999998 66666555 777764322 1222222 233444 8899999999999999999999999 78
Q ss_pred cccccCCceE------------EecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEecCcc
Q psy14542 261 SPVEESDRIQ------------RIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKY 313 (371)
Q Consensus 261 ~~~~~~~~~~------------~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~ 313 (371)
..+....... ...+.|.|.++..+|+|.|+|.|.|..|....++.|.|..+|.
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~p~ 221 (241)
T 3grw_A 157 SKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHGPRA 221 (241)
T ss_dssp CSSCTTTCCCEEEEEEEECSBSEEEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEC-----
T ss_pred cccCCCCceeeeeeeEeeeeecCCceEEEECcCCcccCcEEEEEEecCcceEEEEEEEEecCCCC
Confidence 7775543321 1345799999999999999999999999999999999998877
No 112
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A
Probab=99.91 E-value=2.5e-23 Score=163.44 Aligned_cols=175 Identities=19% Similarity=0.223 Sum_probs=131.3
Q ss_pred ceeeecCCcEEEEEEecCCCCCceEEEee-CCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeec
Q psy14542 105 QVVVDVGHRIELHCRVSPKRLSSAKAWLK-DGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDE 183 (371)
Q Consensus 105 ~~~~~~g~~v~l~C~~~~~~~~~~v~W~~-~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~ 183 (371)
...+.+|+.++|.|.+.+.++.+.+.|++ ++..+............ ......|.|.+++.
T Consensus 11 ~~~v~~G~~v~l~C~~~~~~~~~~v~W~~~~g~~~~~~~~~~~~~~~-------------------~~~~~~L~i~~~~~ 71 (191)
T 1epf_A 11 QGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWN-------------------DDDSSTLTIYNANI 71 (191)
T ss_dssp SEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEE-------------------ETTEEEEEECSCCG
T ss_pred CcEEcCCCCEEEEEECCCCCCCceEEEEeCCCccccCCCCeEEEEEC-------------------CCCceEEEEccCCc
Confidence 34458999999999999876348999999 88776643211110000 01226899999999
Q ss_pred CCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEeCCccc
Q psy14542 184 SDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPV 263 (371)
Q Consensus 184 ~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~ 263 (371)
+| +|.|+|.+.+...+...... .+.|. .+|.+...+.... +..|+.+.|.|.+.+.|.+.+.|++++..+
T Consensus 72 ~d-~G~Y~C~~~~~~~~~~~~~~---~l~v~-----~~p~~~~~~~~~~-~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~ 141 (191)
T 1epf_A 72 DD-AGIYKCVVTAEDGTQSEATV---NVKIF-----QKLMFKNAPTPQE-FKEGEDAVIVCDVVSSLPPTIIWKHKGRDV 141 (191)
T ss_dssp GG-CEEEEEEEEETTTEEEEEEE---EEEEE-----CCSEEEECCSSEE-CCTTSCEEECCEEECSSCCEEEEEETTEEG
T ss_pred cc-CEEEEEEEEcCCCcceEEEE---EEEee-----cCceEecCCCcEe-ecCCCeEEEEEEECCCCCCEEEEEECCEEe
Confidence 99 99999999998324444444 66666 6677766666666 899999999999999999999999999877
Q ss_pred ccC--CceE-EecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEE
Q psy14542 264 EES--DRIQ-RIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQY 308 (371)
Q Consensus 264 ~~~--~~~~-~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 308 (371)
... .++. ..++.|.|.++..+|+|.|+|.|.|..+.......+.|
T Consensus 142 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~i~v 189 (191)
T 1epf_A 142 ILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQV 189 (191)
T ss_dssp GGGCCTTEEECTTSCEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEEE
T ss_pred eccCCceEEEecCCeEEECCCChhhCEEEEEEEEEecceeEEEEEEEE
Confidence 543 2333 34568999999999999999999999977655555554
No 113
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane, phosphorylation, immunoglobulin domain, membrane, glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB: 2xy1_A*
Probab=99.91 E-value=7.6e-23 Score=160.81 Aligned_cols=166 Identities=28% Similarity=0.490 Sum_probs=128.4
Q ss_pred eecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCcc
Q psy14542 108 VDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRY 187 (371)
Q Consensus 108 ~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~ 187 (371)
+.+|+.++|.|.+.+.+. +.+.|++++..+.....+.+ ...+..|.|.+++..| .
T Consensus 16 v~~G~~v~l~C~~~~~p~-~~v~W~~~~~~~~~~~~~~~-----------------------~~~~~~L~i~~~~~~d-~ 70 (192)
T 2va4_A 16 AERGEEMTFSCRASGSPE-PAISWFRNGKLIEENEKYIL-----------------------KGSNTELTVRNIINSD-G 70 (192)
T ss_dssp TTSCCCEEEECEEECSSC-CEEEEEETTEECCCSSSEEE-----------------------ETTTTEEEECSCCGGG-C
T ss_pred EecCCCEEEEEeeccCCC-CeEEEEECCeEcCCCccEEE-----------------------eCCeeEEEEecCChhc-C
Confidence 378999999999988877 89999999988765432211 0122579999999999 9
Q ss_pred ceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEeC--Cccccc
Q psy14542 188 RSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQ--DSPVEE 265 (371)
Q Consensus 188 g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~--~~~~~~ 265 (371)
|.|+|.+.+. .+...... .+.|. .+|.+..... .. +..|+.+.|.|.+.+.|.+.+.|+++ +..+..
T Consensus 71 G~Y~C~~~~~-~~~~~~~~---~l~V~-----~~p~~~~~~~-~~-~~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~ 139 (192)
T 2va4_A 71 GPYVCRATNK-AGEDEKQA---FLQVF-----VQPHIIQLKN-ET-TYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTE 139 (192)
T ss_dssp EEEEEEEEET-TEEEEEEE---EEEEE-----EEEEEEEECC-EE-ECTTSEEEEEEEEEEESCCEEEEEETTTTEEECT
T ss_pred cEEEEEEEcc-ccccceEE---EEEEE-----ccCcccccCc-ce-EEeCCeEEEEEEecCCCCCcEEEEeCCCCceeec
Confidence 9999999988 66665555 77776 5565554333 33 77899999999999999999999998 433332
Q ss_pred -----CCceEEe----cceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEe
Q psy14542 266 -----SDRIQRI----GSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYA 309 (371)
Q Consensus 266 -----~~~~~~~----~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 309 (371)
..++... .+.|.|.++..+|+|.|+|.|.|..|....++.|.|.
T Consensus 140 ~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 192 (192)
T 2va4_A 140 GDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIE 192 (192)
T ss_dssp TCBCTTSCEEEEEETTEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred cccccCCcEEEeeccCceEEEEecCCcccCEEEEEEEEecCCceEEEEEEEeC
Confidence 2233322 2579999999999999999999999999888888874
No 114
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}
Probab=99.91 E-value=1.2e-23 Score=165.35 Aligned_cols=174 Identities=21% Similarity=0.351 Sum_probs=134.7
Q ss_pred cccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC--------CeeEEEEccCCcCCCeEEEEEEE
Q psy14542 8 KSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN--------SDEVLVLDRVQREDAGMYQCHVS 79 (371)
Q Consensus 8 ~~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~--------~~~~l~i~~~~~~d~G~Y~C~~~ 79 (371)
..+|.+...+.. ..+.+|++++|.|.+ .+.|.+.+.|++++..+... ....|.|.+++.+|+|.|+|.+.
T Consensus 5 ~~~P~i~~~~~~-~~~~~G~~v~l~C~~-~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~ 82 (192)
T 2iep_A 5 PKAPVITTPLET-VDALVEEVATFMCAV-ESYPQPEISWTRNKILIKLFDTRYSIRENGQLLTILSVEDSDDGIYCCTAN 82 (192)
T ss_dssp CEEEEESSCCCE-EEEETTSCEEEECCE-EEESCCEEEEEETTEECCTTCTTEEEEGGGTEEEESSCCGGGCEEEEEEEE
T ss_pred CCCceeecCccc-eeeeCCCcEEEEeeC-CCCCCCeEEEEECCEEccccCccEEEcCCccEEEEcCCCcccCeEEEEEEE
Confidence 455667766666 889999999999954 55677899999999887542 34579999999999999999999
Q ss_pred cCCCC-eEEEEEEEEecceeeEecCCc-eeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCe
Q psy14542 80 ADDDS-AQMSAQVILGGELVEIASSNQ-VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAG 157 (371)
Q Consensus 80 ~~~~~-~~~~~~l~v~~~~~~~~~~~~-~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g 157 (371)
+..+. ....+.|.|. .+|.+...+. ..+..|+.+.|.|.+.+.+. +.+.|++++..+....
T Consensus 83 ~~~~~~~~~~~~l~v~-~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~-~~v~W~~~~~~~~~~~--------------- 145 (192)
T 2iep_A 83 NGVGGAVESCGALQVK-MKPKITRPPINVKIIEGLKAVLPCTTMGNPK-PSVSWIKGDSALRENS--------------- 145 (192)
T ss_dssp CSSSCCEEEEEEEEEE-EEEEEEECCCCEEEETTSCEEECCEEEEESC-CEEEEEETTEECCCCS---------------
T ss_pred cCCCceeEeEEEEEEE-eCCccccCCcceEEeCCCcEEEEEEEeccCC-ceEEEEeCCEEccCCC---------------
Confidence 88776 4566778777 5555555443 34589999999999988877 7999999998876543
Q ss_pred eEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeecccccee-eeeeccceeeee
Q psy14542 158 MYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGAS-LLSVNRGRLSLT 214 (371)
Q Consensus 158 ~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~-~~~~~~~~l~v~ 214 (371)
++....++.|.|.++..+| .|.|+|.+.|. .|.. .... .|.|.
T Consensus 146 ---------~~~~~~~~~L~i~~~~~~d-~G~Y~C~a~n~-~g~~~s~~~---~l~V~ 189 (192)
T 2iep_A 146 ---------RIAVLESGSLRIHNVQKED-AGQYRCVAKNS-LGTAYSKLV---KLEVE 189 (192)
T ss_dssp ---------SEEECTTSCEEESSCCGGG-CEEEEEEEEET-TEEEECCCE---EEEEE
T ss_pred ---------cEEEecCCcEEEecCChhh-CEEEEEEEEcC-CCcEEEEEE---EEEEE
Confidence 2233334689999999999 99999999998 6654 3334 66665
No 115
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*
Probab=99.91 E-value=1.3e-23 Score=162.69 Aligned_cols=169 Identities=17% Similarity=0.246 Sum_probs=124.9
Q ss_pred ecccceEEEeCCCcEEEeccCcEEEEEEecCCCCC-CeeEEEeCCEEEeeCCeeEEEEccCCcCCCeEEEEEEEcCCCCe
Q psy14542 7 VKSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLS-SAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHVSADDDSA 85 (371)
Q Consensus 7 v~~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~-~~~~W~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~ 85 (371)
|.++|.+.+.|.. ..+.+|++++|.|.+ .+.+. ..+.|++++..+.. ...+|.|.+++.+|+|.|+|.+.+..+.
T Consensus 1 v~~~P~i~~~p~~-~~v~~G~~v~L~C~~-~~~~~~~~i~W~~~~~~~~~-~~~~L~i~~v~~~d~G~Y~C~~~~~~~s- 76 (176)
T 1f2q_A 1 VPQKPKVSLNPPW-NRIFKGENVTLTCNG-NNFFEVSSTKWFHNGSLSEE-TNSSLNIVNAKFEDSGEYKCQHQQVNES- 76 (176)
T ss_dssp ---CCCCEEESSC-SEEETTCCEEEECCT-TCC----CCEEEETTEECSC-CSSEEEECSCCGGGCEEEEEECTTSSCC-
T ss_pred CCCCCEEEcCCCC-cceecCCcEEEEEeC-CCCCCcceEEEEECCeECCC-CceEEEEeccceecCEEEEEEcCCcccc-
Confidence 3568889999998 889999999999954 44444 46999999998875 6789999999999999999999875543
Q ss_pred EEEEEEEEecceeeEecCCceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeC
Q psy14542 86 QMSAQVILGGELVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIED 165 (371)
Q Consensus 86 ~~~~~l~v~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~ 165 (371)
..+.|.|. .++.+...+...+.+|+.+.|.|.+.+.++.+.+.|++++..+....
T Consensus 77 -~~~~l~V~-~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~----------------------- 131 (176)
T 1f2q_A 77 -EPVYLEVF-SDWLLLQASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWY----------------------- 131 (176)
T ss_dssp -CCEEEEEE-CSSEEEEESCSEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSCC-----------------------
T ss_pred -ccEEEEEe-CcceeecCCcceeeCCCCEEEEEEecCCCCceEEEEEECCEEEeeec-----------------------
Confidence 44566666 34444444455668999999999995444337999999998774321
Q ss_pred CceeEeccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeee
Q psy14542 166 GKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLT 214 (371)
Q Consensus 166 ~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~ 214 (371)
.+..|.|.+++.+| .|.|+|.+.|...+...... .|.|.
T Consensus 132 ------~~~~L~i~~v~~~d-~G~Y~C~a~n~~~~~~s~~~---~l~V~ 170 (176)
T 1f2q_A 132 ------ENHNISITNATVED-SGTYYCTGKVWQLDYESEPL---NITVI 170 (176)
T ss_dssp ------CSSEEEESSCCGGG-CEEEEEEEEETTEEEECCCE---EEEEE
T ss_pred ------CCCeEEECCCCccc-CEEEEEEEEeCCcceEecCE---EEEEe
Confidence 12689999999999 99999999986233333333 66666
No 116
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4
Probab=99.91 E-value=4.8e-23 Score=160.55 Aligned_cols=175 Identities=22% Similarity=0.359 Sum_probs=131.5
Q ss_pred eEecCCce-eeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEE
Q psy14542 99 EIASSNQV-VVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELI 177 (371)
Q Consensus 99 ~~~~~~~~-~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~ 177 (371)
.+...+.. .+.+|+.++|.|.+.+.+. +.+.|++++..+.......+.... .. ....|.
T Consensus 4 ~~~~~p~~~~v~~G~~v~l~C~~~~~p~-~~v~W~k~~~~~~~~~~~~~~~~~---------------~~----~~~~L~ 63 (182)
T 1rhf_A 4 KLMGAPVKLTVSQGQPVKLNCSVEGMEE-PDIQWVKDGAVVQNLDQLYIPVSE---------------QH----WIGFLS 63 (182)
T ss_dssp ---CCCEEEEEETTCCEEEEEEEESCSS-CCEEEEETTEECCSSEEEEEEEET---------------TE----EEEEEE
T ss_pred EEEeCCcceEEeCCCcEEEEEEEeCCCC-CeEEEEECCeecCCCCceEEEecC---------------CC----ceEEEE
Confidence 33444443 3489999999999998776 899999999887655322211111 00 026799
Q ss_pred EEEeecCCccceeEEEeeccccce-eeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecCCCC-ceE
Q psy14542 178 IHQVDESDRYRSYQCRGVNKLTGA-SLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLP-TIK 255 (371)
Q Consensus 178 i~~~~~~d~~g~y~C~~~~~~~~~-~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~v~ 255 (371)
|.+++.+| .|.|+|.+.+. .+. ..... .|.|. .+|.+...+.... +..|+.+.|.|.+.+.|.| .+.
T Consensus 64 i~~~~~~d-~G~Y~C~~~~~-~~~~~~~~~---~l~V~-----~~p~~~~~~~~~~-~~~g~~~~l~C~~~g~p~p~~v~ 132 (182)
T 1rhf_A 64 LKSVERSD-AGRYWCQVEDG-GETEISQPV---WLTVE-----GVPFFTVEPKDLA-VPPNAPFQLSCEAVGPPEPVTIV 132 (182)
T ss_dssp ESSCCGGG-CEEEEEEESSC-TTCEECCCE---EEEEE-----CSCEEEECCCCEE-ECTTCCEEEEEEEECSSSCCEEE
T ss_pred EeecCccc-CeEEEEEEEcC-CCcEEEEEE---EEEEe-----cCCeEEecCcceE-ecCCCEEEEEeEecCCCCCCEEE
Confidence 99999999 99999999987 443 33444 77777 6777777666666 9999999999999999999 999
Q ss_pred EEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCCCce-eEEEEEEe
Q psy14542 256 WYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDK-MQLFIQYA 309 (371)
Q Consensus 256 W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~-~~~~l~v~ 309 (371)
|++++..+..... ....|.|.++ +|+|.|+|.|.|..|... .++.|.|+
T Consensus 133 W~~~~~~~~~~~~---~~~~L~i~~~--~d~G~Y~C~a~N~~g~~~s~~~~l~Vk 182 (182)
T 1rhf_A 133 WWRGTTKIGGPAP---SPSVLNVTGV--TQSTMFSCEAHNLKGLASSRTATVHLQ 182 (182)
T ss_dssp EEETTEECSCSEE---SSEEEEECCC--SSCEEEEEEEEETTEEEECCCEEEEEC
T ss_pred EEcCCeECCCCCC---CceEEEEecc--ccCeEEEEEEECCCCCcccceEEEEeC
Confidence 9999988765432 4678999888 589999999999999874 47777663
No 117
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Probab=99.91 E-value=1.5e-22 Score=177.21 Aligned_cols=185 Identities=17% Similarity=0.331 Sum_probs=143.5
Q ss_pred eeEecCCceeeecCCcEEEEEEecCCCCCceEEEeeC--CEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEe---c
Q psy14542 98 VEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKD--GLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHML---S 172 (371)
Q Consensus 98 ~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~---~ 172 (371)
|.+.......+.+|+.++|.|.+.+.+. +.++|+++ +..+..... ...+ ++.+. .
T Consensus 2 P~i~~~~~~~~~~G~~v~l~C~~~g~p~-p~v~W~~~~~g~~~~~~~~----------~~~~---------~~~~~~~~~ 61 (389)
T 2jll_A 2 PHIIQLKNETTYENGQVTLVCDAEGEPI-PEITWKRAVDGFTFTEGDK----------SLDG---------RIEVKGQHG 61 (389)
T ss_dssp CEEEECCCEEEETTSEEEEEEEEECSSC-CEEEEEETTTTEEECC--C----------CSSS---------SEEEEECSS
T ss_pred CeEEecCceEEeCCCeEEEEEEeecccC-CeEEEEeCCCCceeccCcC----------CCCC---------eEEEeccCC
Confidence 4455555556688999999999999887 89999999 877754210 0011 22221 2
Q ss_pred cceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecCCCC
Q psy14542 173 SGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLP 252 (371)
Q Consensus 173 ~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~ 252 (371)
.+.|.|.+++.+| +|.|+|.+.|. .|...... .|.|. .+|.+...+.... +..|+.+.|.|.+.|.|.+
T Consensus 62 ~~~L~i~~v~~~D-~G~Y~C~a~n~-~g~~~~~~---~l~V~-----~~P~~~~~~~~~~-~~~g~~~~l~C~~~g~p~~ 130 (389)
T 2jll_A 62 SSSLHIKDVKLSD-SGRYDCEAASR-IGGHQKSM---YLDIE-----YAPKFISNQTIYY-SWEGNPINISCDVKSNPPA 130 (389)
T ss_dssp EEEEEEESCCGGG-CEEEEEEEECS-SCEEEEEE---EEEEE-----EEEEECCSCCEEE-ECTTCCEEEEECEEEESCC
T ss_pred cceEEEcccChhh-CEEEEEEEEeC-CCCcceEE---EEEEE-----eCCEEecCcceEE-eccCCEEEEEEEEEecCCC
Confidence 3689999999999 99999999998 77766666 88888 6677665554444 7899999999999999999
Q ss_pred ceEEEeCCcccccCC--ceEE----ecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEecCcc
Q psy14542 253 TIKWYKQDSPVEESD--RIQR----IGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKY 313 (371)
Q Consensus 253 ~v~W~~~~~~~~~~~--~~~~----~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~ 313 (371)
.+.|++++..+.... ++.. ....|.|.++..+|+|.|+|.|.|..|.....+.|.+...|.
T Consensus 131 ~i~W~~~g~~l~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P~ 197 (389)
T 2jll_A 131 SIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALADVPS 197 (389)
T ss_dssp EEEEEETTEESSCTTCTTEEEEECSSCEEEEECCCSTTSSEEEEEEEEETTEEEEEEEEEEECCCCC
T ss_pred eEEEEECCccCCcccCceEEEeccCCEEEEEECCCChhhCEEEEEEEEcCCCcEEEEEEEEecCCCC
Confidence 999999999887653 3332 234799999999999999999999999988888888876655
No 118
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, IG, membrane, homphilic, glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB: 2xy2_A* 2vaj_A
Probab=99.91 E-value=3.7e-23 Score=162.18 Aligned_cols=163 Identities=22% Similarity=0.390 Sum_probs=125.7
Q ss_pred ceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEe-CCEEEeeC---------CeeEEEEccCCcCCCeEEEEEEEc
Q psy14542 11 LSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLK-DGLVLRRN---------SDEVLVLDRVQREDAGMYQCHVSA 80 (371)
Q Consensus 11 ~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~-~~~~~~~~---------~~~~l~i~~~~~~d~G~Y~C~~~~ 80 (371)
+++.+.|.. ..+.+|++++|.|.+ .+.|. .+.|++ ++..+... ...+|.|.+++.+|+|.|+|.+.+
T Consensus 3 l~~~~~~~~-~~v~~G~~v~L~C~~-~~~p~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~ 79 (189)
T 2v44_A 3 LQVTISLSK-VELSVGESKFFTCTA-IGEPE-SIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATD 79 (189)
T ss_dssp EEEEESCSE-EEEETTCCEEEEEEE-EECCS-EEEEECTTSCBCCCCSSEEEEEETTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred eEEEecCCc-eEEecCCcEEEEEEe-ecCCe-eEEEEeCCCCccCCCceEEEECCCCeEEEEEccCCcccCeEEEEEEEe
Confidence 457777777 899999999999965 44555 899999 66655432 345899999999999999999999
Q ss_pred CCCCe-EEEEEEEEecceeeEec-CCceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCee
Q psy14542 81 DDDSA-QMSAQVILGGELVEIAS-SNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGM 158 (371)
Q Consensus 81 ~~~~~-~~~~~l~v~~~~~~~~~-~~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~ 158 (371)
..+.. ...+.|.|. .+|.+.. .....+..|+.+.|.|.+.+.|. +.+.|++++..+....
T Consensus 80 ~~g~~~~~~~~l~v~-~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~-p~v~W~~~~~~~~~~~---------------- 141 (189)
T 2v44_A 80 AKGQTQEATVVLEIY-QKLTFREVVSPQEFKQGEDAEVVCRVSSSPA-PAVSWLYHNEEVTTIS---------------- 141 (189)
T ss_dssp TTSCEEEEEEEEEEE-CCCEEESCCCSEEEETTSCEEECCEEECSSC-CEEEEEEEC--CEECC----------------
T ss_pred CCCCcEEEEEEEEEe-cCCceeecCCcEEEeCCCCEEEEEEECcCCC-CcEEEEECCcEEeccC----------------
Confidence 87766 677888888 4455543 33445589999999999998887 7999999998776432
Q ss_pred EEEEEeCCceeEeccceEEEEEeecCCccceeEEEeecccccee
Q psy14542 159 YQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGAS 202 (371)
Q Consensus 159 y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~ 202 (371)
+.++....++.|.|.++..+| .|.|+|.+.|. .+..
T Consensus 142 ------~~~~~~~~~~~L~i~~v~~~d-~G~Y~C~a~n~-~~~~ 177 (189)
T 2v44_A 142 ------DNRFAMLANNNLQILNINKSD-EGIYRCEGRVE-ARGE 177 (189)
T ss_dssp ------CTTEEECTTSCEEETTCCGGG-CEEEEEEEEET-TTTE
T ss_pred ------CCCEEEecCCcEEEEEcCccc-CeEEEEEEEcc-ccCc
Confidence 124444455789999999999 99999999998 5433
No 119
>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}
Probab=99.91 E-value=5e-24 Score=182.14 Aligned_cols=230 Identities=14% Similarity=0.199 Sum_probs=141.8
Q ss_pred EecCCc-eeeecCCcEEEEEEecCC-CCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEE
Q psy14542 100 IASSNQ-VVVDVGHRIELHCRVSPK-RLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELI 177 (371)
Q Consensus 100 ~~~~~~-~~~~~g~~v~l~C~~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~ 177 (371)
+...+. ..+.+|+.+.|.|.+.+. +. +.+.|++++..... .+... .....+.+.... +..........|.
T Consensus 6 v~~~p~~~~v~~G~~v~L~C~~~~~~p~-~~v~W~k~~~~~~~----~i~~~--~~~~~~r~~~~~-~~~~~~~~~~~L~ 77 (327)
T 2wng_A 6 VIQPDKSVSVAAGESAILHCTVTSLIPV-GPIQWFRGAGPARE----LIYNQ--KEGHFPRVTTVS-ESTKRENMDFSIS 77 (327)
T ss_dssp EECCCSEEEEETTSCEEECCEESCCCSC-CCEEEEESCSTTCE----EEEET--TSSCCTTEEECC----CTTCCBCCEE
T ss_pred EEcCCCceEEecCCcEEEEEEccCcCCC-ceEEEEECCCCCce----EEEEc--CCCCcceeeeec-ccccccCceeEEE
Confidence 334343 344899999999999887 55 79999998743210 00000 000000000000 0000002235799
Q ss_pred EEEeecCCccceeEEEeeccccceee--eeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecCCCC--c
Q psy14542 178 IHQVDESDRYRSYQCRGVNKLTGASL--LSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLP--T 253 (371)
Q Consensus 178 i~~~~~~d~~g~y~C~~~~~~~~~~~--~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~--~ 253 (371)
|.+++.+| +|.|+|.+.+. .+... .......|.|...+ .+|.+. .+ ... +..|+.+.|.|.+.+.|++ .
T Consensus 78 I~~v~~~D-~G~Y~C~a~n~-~~~~~~~~~~~~~~l~V~~~p--~~p~i~-~~-~~~-~~~g~~~~l~C~~~g~p~~~~~ 150 (327)
T 2wng_A 78 ISNITPAD-AGTYYCVKFRK-GSPDTEFKSGAGTELSVRAKP--SAPVVS-GP-AAR-ATPQHTVSFTCESHGFSPRDIT 150 (327)
T ss_dssp ECSCCGGG-CEEEEEEEEES-STTCEEEEECCCEEEEEEBCC--CCCEEE-CC-SSC-BCTTCEEEEEEEEEEEBSSCCE
T ss_pred EccCcccc-CeEEEEEeecC-CCcceeEeecCcEEEEEEecC--CCceee-cc-ccc-cCCCCEEEEEEEEeCccCCCcE
Confidence 99999999 99999999987 44211 11112266666321 223332 22 234 8899999999999987765 8
Q ss_pred eEEEeCCcccccCCceE---------EecceEEEeccCCCCCeEEEEEEEcCCCCc---eeEEEE--EEecCcccccccc
Q psy14542 254 IKWYKQDSPVEESDRIQ---------RIGSSLSISHVEESDSGVWNCVANNSEGQD---KMQLFI--QYAHGKYHMLSSG 319 (371)
Q Consensus 254 v~W~~~~~~~~~~~~~~---------~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~---~~~~~l--~v~~~p~~~~~~~ 319 (371)
+.|+++|..+....... ...+.|.|.....+|.|.|+|.|.|..+.. ..+..+ .+..+|.
T Consensus 151 v~W~k~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~d~~g~Y~C~a~n~~~~~~~~~~~~~~~~~v~~~P~------ 224 (327)
T 2wng_A 151 LKWFKNGNELSDFQTNVDPVGESVSYSIHSTAKVVLTREDVHSQVICEVAHVTLQGDPLRGTANLSETIRVPPT------ 224 (327)
T ss_dssp EEEEETTEECCCEEEEEECSSCCSCEEEEEEEEEECCTTGGGCEEEEEEECTTSCSCCEEEEEEGGGTBCBCCE------
T ss_pred EEEEECCEEccccccccccccCCCceEEEEEEEEechhcCcCceEEEEEeccccCCCcccceEEeccccCCCCE------
Confidence 99999998876543211 122357787777778899999999988763 333333 2344555
Q ss_pred eEEEEeeeeccccccccccccccceeeeeecCCeEEEeeeeecCCCC--ccccC
Q psy14542 320 ELIIHQVDEKNKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLP--TIKYR 371 (371)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p--~i~W~ 371 (371)
+..... .+.+|+.++|.|.+.|+|+| .|+|+
T Consensus 225 ---i~~~~~------------------~~~~G~~v~l~C~~~g~~p~~~~v~W~ 257 (327)
T 2wng_A 225 ---LEVTQQ------------------PVRAENQVNVTCQVRKFYPQRLQLTWL 257 (327)
T ss_dssp ---EEEEEE------------------CCSSTTCCEEEEEEEEEBSSCEEEEEE
T ss_pred ---EEEecC------------------CcCCCCcEEEEEEEccccCCCcEEEEE
Confidence 331111 24589999999999996554 79996
No 120
>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*
Probab=99.91 E-value=1.1e-23 Score=166.13 Aligned_cols=160 Identities=14% Similarity=0.152 Sum_probs=116.8
Q ss_pred EEEeccCcEEEEEEe--cCCCCCCeeEEEeCCEEEe--------------------------eCCeeEEEEccCCcCCCe
Q psy14542 21 VVVDVGHRIELHCRV--SPKRLSSAKAWLKDGLVLR--------------------------RNSDEVLVLDRVQREDAG 72 (371)
Q Consensus 21 ~~~~~G~~v~l~C~~--~~~~~~~~~~W~~~~~~~~--------------------------~~~~~~l~i~~~~~~d~G 72 (371)
+.+..|++++|.|.. ..+.|.+.+.|+|+|..+. ......|.|.+++.+|+|
T Consensus 3 Vta~~Ge~v~L~C~~~~v~~~p~~~V~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G 82 (203)
T 4fa8_A 3 VTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHDG 82 (203)
T ss_dssp CEEETTCCEEEEEECSSTTCSTTSEEEEEEEETTTEEEEEEEEETTEEEECGGGBTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred eEEEcCCCEEEEeeeeccCCCCCcEEEEEEcCCCcceEEEEecCCceEEeeccccceEEEEEcCCEEEEEEccCCHHHCe
Confidence 678999999999953 3567889999999652110 014568999999999999
Q ss_pred EEEEEEEcCCCCeEEEEEEEEecceeeEecCCceee-ecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEccc
Q psy14542 73 MYQCHVSADDDSAQMSAQVILGGELVEIASSNQVVV-DVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRV 151 (371)
Q Consensus 73 ~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~-~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~ 151 (371)
.|+|.+.|..+.....+.|.|. .|+.+...+.... .+|+.+.|.|.+.|.|. +.++|++++..+......
T Consensus 83 ~Y~C~a~n~~g~~~~~~~l~V~-~p~~~~~~~~~~~v~~g~~~~l~C~~~G~P~-P~v~W~~~~~~~~~~~~~------- 153 (203)
T 4fa8_A 83 NYLCRMKLGETEVTKQEHLSVV-KPLTLSVHSERSQFPDFSVLTVTCTVNAFPH-PHVQWLMPEGVEPAPTAA------- 153 (203)
T ss_dssp EEEEEEEETTEEEEEEEEEEEE-EEEEEEEEEEECCSSCSCCEEEEEEEEEESC-CEEEECCC-----------------
T ss_pred EEEEEEEcCCCcEEEEEEEEec-CCceeeecceeEEEcCCCEEEEEEEcCCCCC-CEEEEEECCeeecCcccc-------
Confidence 9999999988888888999998 6666665554433 78999999999999888 899999876544321100
Q ss_pred CcCCCeeEEEEEeCCceeEeccce---EEEEEeecCCccceeEEEeeccccceeee
Q psy14542 152 QREDAGMYQCHIEDGKYHMLSSGE---LIIHQVDESDRYRSYQCRGVNKLTGASLL 204 (371)
Q Consensus 152 ~~~~~g~y~~~~~~~~~~~~~~~~---l~i~~~~~~d~~g~y~C~~~~~~~~~~~~ 204 (371)
++++.+..++. +.|.+++.+| .|.|+|.|.|. .|....
T Consensus 154 -------------~~r~~~~~~g~l~il~i~~v~~~D-~G~YtC~A~N~-~G~a~~ 194 (203)
T 4fa8_A 154 -------------NGGVMKEKDGSLSVAVDLSLPKPW-HLPVTCVGKND-KEEAHG 194 (203)
T ss_dssp ---------------CCEECTTSCEEEEEEEEECSSC-CCCEEEEEESS-SCEEEE
T ss_pred -------------cceEEEeCCCCEEEEEECCCCHHH-CEEEEEEEEcC-CCEEEE
Confidence 12333333343 4557899999 99999999999 776543
No 121
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}
Probab=99.91 E-value=1.7e-22 Score=158.48 Aligned_cols=176 Identities=18% Similarity=0.317 Sum_probs=131.2
Q ss_pred cceEEEeCCCcEEEec-cCcEEEEEEecCCCCC--CeeEEEeCCEEEeeC----CeeEEEEccCCcCCCeEEEEEEEcCC
Q psy14542 10 SLSIEMSPSGQVVVDV-GHRIELHCRVSPKRLS--SAKAWLKDGLVLRRN----SDEVLVLDRVQREDAGMYQCHVSADD 82 (371)
Q Consensus 10 ~~~~~~~p~~~~~~~~-G~~v~l~C~~~~~~~~--~~~~W~~~~~~~~~~----~~~~l~i~~~~~~d~G~Y~C~~~~~~ 82 (371)
+|.+.. +.. ..+.+ |++++|.|.+. +.+. +.+.|++++..+... ....|.|.+++.+|+|.|+|.+.+.
T Consensus 3 ~P~i~~-~~~-~~v~~~G~~v~l~C~~~-~~~~~~~~v~W~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~- 78 (190)
T 2wv3_A 3 EPRIVT-SEE-VIIRDSLLPVTLQCNLT-SSSHTLMYSYWTKNGVELTATRKNASNMEYRINKPRAEDSGEYHCVYHFV- 78 (190)
T ss_dssp CCEEEE-CCC-EECCCSSSCEEEEEEEE-ECSSCEEEEEEEETTEECTTCCBCCSEEEEEESSCCGGGCEEEEEEEEET-
T ss_pred CCcccc-cce-EEEccCCceEEEEEEec-cCCCCceEEEEEECCEECcccceEeccEEEEEecCCcccCEEEEEEEEeC-
Confidence 466655 444 56777 99999999654 3444 789999999988754 5678999999999999999999998
Q ss_pred CCeEEEEEEEEecceeeEecCCc-eeeecCCcEEEEEEecCCCCCceEEEee--CCEEeeeCCeeEEEEcccCcCCCeeE
Q psy14542 83 DSAQMSAQVILGGELVEIASSNQ-VVVDVGHRIELHCRVSPKRLSSAKAWLK--DGLVLRRNSDEVLVLDRVQREDAGMY 159 (371)
Q Consensus 83 ~~~~~~~~l~v~~~~~~~~~~~~-~~~~~g~~v~l~C~~~~~~~~~~v~W~~--~~~~~~~~~~~~~~~~~~~~~~~g~y 159 (371)
+.....+.|.|. .+|.+...+. ..+.+|+.+.|.|.+.+.|. +.+.|++ ++..+.... ..+.|
T Consensus 79 ~~~~~~~~l~V~-~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~-p~i~W~~~~~g~~~~~~~------------~~~~~ 144 (190)
T 2wv3_A 79 SAPKANATIEVK-AAPDITGHKRSENKNEGQDAMMYCKSVGYPH-PEWMWRKKENGVFEEISN------------SSGRF 144 (190)
T ss_dssp TEEEEEEEEEEE-CCCEEEEECSEEEEETTSCEEEEEEEECSSC-CEEEEEEEETTEEEECCC------------TTSCE
T ss_pred CcccccEEEEEe-cCCcccccCCcceeeCCCcEEEEEEeCccCC-CceEEEEcCCCceeeeec------------CCCeE
Confidence 777888899998 5566554443 34589999999999998887 8999999 677664321 11111
Q ss_pred EEEEeCCceeEeccceEEEEEee-cCCccceeEEEeeccccceeeeeeccceeeee
Q psy14542 160 QCHIEDGKYHMLSSGELIIHQVD-ESDRYRSYQCRGVNKLTGASLLSVNRGRLSLT 214 (371)
Q Consensus 160 ~~~~~~~~~~~~~~~~l~i~~~~-~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~ 214 (371)
...... ....|.|.++. .+| .|.|+|.+.|. .|....+. .|.|.
T Consensus 145 ~~~~~~------~~~~L~i~~~~~~~d-~G~Y~C~a~N~-~g~~~~~~---~l~V~ 189 (190)
T 2wv3_A 145 FIINKE------NYTELNIVNLQITED-PGEYECNATNS-IGSASVST---VLRVR 189 (190)
T ss_dssp EEEECS------SEEEEEECSCCTTTS-CEEEEEEEECS-SCEEEEEE---EEEEE
T ss_pred EEecCC------CeeEEEEEeccccCC-CEEEEEEEEec-CCcceeEE---EEEEE
Confidence 111101 01479999999 799 99999999999 77766666 66654
No 122
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, IG, membrane, homphilic, glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB: 2xy2_A* 2vaj_A
Probab=99.91 E-value=7.7e-23 Score=160.38 Aligned_cols=169 Identities=18% Similarity=0.294 Sum_probs=124.5
Q ss_pred eeeecCCcEEEEEEecCCCCCceEEEee-CCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecC
Q psy14542 106 VVVDVGHRIELHCRVSPKRLSSAKAWLK-DGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDES 184 (371)
Q Consensus 106 ~~~~~g~~v~l~C~~~~~~~~~~v~W~~-~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~ 184 (371)
..+.+|+.++|.|.+.+.+. .+.|++ ++..+.......+... . ....|.|.++..+
T Consensus 12 ~~v~~G~~v~L~C~~~~~p~--~v~W~~~~~~~~~~~~~~~~~~~---------------~------~~~~L~i~~~~~~ 68 (189)
T 2v44_A 12 VELSVGESKFFTCTAIGEPE--SIDWYNPQGEKIISTQRVVVQKE---------------G------VRSRLTIYNANIE 68 (189)
T ss_dssp EEEETTCCEEEEEEEEECCS--EEEEECTTSCBCCCCSSEEEEEE---------------T------TEEEEEECSCCGG
T ss_pred eEEecCCcEEEEEEeecCCe--eEEEEeCCCCccCCCceEEEECC---------------C------CeEEEEEccCCcc
Confidence 34489999999999988765 899999 6665544322111100 0 1148999999999
Q ss_pred CccceeEEEeecccccee-eeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEeCCccc
Q psy14542 185 DRYRSYQCRGVNKLTGAS-LLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPV 263 (371)
Q Consensus 185 d~~g~y~C~~~~~~~~~~-~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~ 263 (371)
| +|.|+|.+.+. .+.. .... .+.|. .+|.+...+.... +..|+.+.|.|.+.+.|.+.+.|++++..+
T Consensus 69 d-~G~Y~C~~~~~-~g~~~~~~~---~l~v~-----~~p~~~~~~~~~~-~~~g~~~~l~C~~~g~p~p~v~W~~~~~~~ 137 (189)
T 2v44_A 69 D-AGIYRCQATDA-KGQTQEATV---VLEIY-----QKLTFREVVSPQE-FKQGEDAEVVCRVSSSPAPAVSWLYHNEEV 137 (189)
T ss_dssp G-CEEEEEEEECT-TSCEEEEEE---EEEEE-----CCCEEESCCCSEE-EETTSCEEECCEEECSSCCEEEEEEEC--C
T ss_pred c-CeEEEEEEEeC-CCCcEEEEE---EEEEe-----cCCceeecCCcEE-EeCCCCEEEEEEECcCCCCcEEEEECCcEE
Confidence 9 99999999988 5543 3444 66776 5566655555555 899999999999999999999999999877
Q ss_pred cc--CCceE-EecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEE
Q psy14542 264 EE--SDRIQ-RIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQY 308 (371)
Q Consensus 264 ~~--~~~~~-~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 308 (371)
.. ..++. ..++.|.|.++..+|+|.|+|.|.|..|.......+.|
T Consensus 138 ~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~~~~~~v 185 (189)
T 2v44_A 138 TTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIV 185 (189)
T ss_dssp EECCCTTEEECTTSCEEETTCCGGGCEEEEEEEEETTTTEEEEEEEEE
T ss_pred eccCCCCEEEecCCcEEEEEcCcccCeEEEEEEEccccCceeeeeEEE
Confidence 53 34444 34568999999999999999999999977654444433
No 123
>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*
Probab=99.91 E-value=3.2e-23 Score=163.43 Aligned_cols=176 Identities=15% Similarity=0.184 Sum_probs=120.6
Q ss_pred eeecCCcEEEEEEe---cCCCCCceEEEeeCCEEeeeC-----CeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEE
Q psy14542 107 VVDVGHRIELHCRV---SPKRLSSAKAWLKDGLVLRRN-----SDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELII 178 (371)
Q Consensus 107 ~~~~g~~v~l~C~~---~~~~~~~~v~W~~~~~~~~~~-----~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i 178 (371)
.+..|+.++|.|.. .+.|. +.++|+|++...... ......... ...+.+..... .....|.|
T Consensus 4 ta~~Ge~v~L~C~~~~v~~~p~-~~V~W~k~g~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~------~~~~~L~I 73 (203)
T 4fa8_A 4 TAFLGERVTLTSYWRRVSLGPE-IEVSWFKLGPGEEQVLIGRMHHDVIFIEW---PFRGFFDIHRS------ANTFFLVV 73 (203)
T ss_dssp EEETTCCEEEEEECSSTTCSTT-SEEEEEEEETTTEEEEEEEEETTEEEECG---GGBTTEEEEEE------TTEEEEEE
T ss_pred EEEcCCCEEEEeeeeccCCCCC-cEEEEEEcCCCcceEEEEecCCceEEeec---cccceEEEEEc------CCEEEEEE
Confidence 44789999999964 45566 899999976432211 000111111 01111111111 12257999
Q ss_pred EEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEe
Q psy14542 179 HQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYK 258 (371)
Q Consensus 179 ~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~ 258 (371)
.+++.+| +|.|+|.+.|. .|...... .|.|. .+|.+...+.... +.+|+.+.|.|.+.|.|.|.++|++
T Consensus 74 ~~v~~~D-~G~Y~C~a~n~-~g~~~~~~---~l~V~-----~p~~~~~~~~~~~-v~~g~~~~l~C~~~G~P~P~v~W~~ 142 (203)
T 4fa8_A 74 TAANISH-DGNYLCRMKLG-ETEVTKQE---HLSVV-----KPLTLSVHSERSQ-FPDFSVLTVTCTVNAFPHPHVQWLM 142 (203)
T ss_dssp SSCCGGG-CEEEEEEEEET-TEEEEEEE---EEEEE-----EEEEEEEEEEECC-SSCSCCEEEEEEEEEESCCEEEECC
T ss_pred ccCCHHH-CeEEEEEEEcC-CCcEEEEE---EEEec-----CCceeeecceeEE-EcCCCEEEEEEEcCCCCCCEEEEEE
Confidence 9999999 99999999998 77777766 88887 6777777777766 8999999999999999999999998
Q ss_pred CCcccc----cCCceEE-ecce---EEEeccCCCCCeEEEEEEEcCCCCceeE
Q psy14542 259 QDSPVE----ESDRIQR-IGSS---LSISHVEESDSGVWNCVANNSEGQDKMQ 303 (371)
Q Consensus 259 ~~~~~~----~~~~~~~-~~~~---l~i~~~~~~d~G~Y~C~a~n~~g~~~~~ 303 (371)
+++.+. .+.++.. .+++ +.|.++..+|+|.|+|.|.|..|+....
T Consensus 143 ~~~~~~~~~~~~~r~~~~~~g~l~il~i~~v~~~D~G~YtC~A~N~~G~a~~v 195 (203)
T 4fa8_A 143 PEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHLPVTCVGKNDKEEAHGV 195 (203)
T ss_dssp C------------CCEECTTSCEEEEEEEEECSSCCCCEEEEEESSSCEEEEE
T ss_pred CCeeecCcccccceEEEeCCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEE
Confidence 775442 2334442 3444 4456899999999999999999987653
No 124
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}
Probab=99.91 E-value=5.7e-23 Score=162.93 Aligned_cols=162 Identities=14% Similarity=0.167 Sum_probs=122.5
Q ss_pred EEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC-----------CeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEE
Q psy14542 21 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN-----------SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSA 89 (371)
Q Consensus 21 ~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~-----------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~ 89 (371)
..+.+|+.+.|.|....+.|.+.+.|++||..+..+ ...+|.|.+++.+|+|.|+|.+.| +......
T Consensus 12 ~~v~eg~~v~l~c~~~~~~P~p~i~W~kng~~l~~~~~~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a~N--g~a~~~~ 89 (207)
T 3rbs_A 12 VEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQD--GKATNHS 89 (207)
T ss_dssp EEECGGGCEEEEEECSCCCSCCEEEEEETTEEECSSSSCEEEECTTTCEEEEEESCCCGGGCEEEEEEEEE--TTEEEEE
T ss_pred eEEEeCCeEEEEEEEecCCCCCEEEEEECCEECccCCCEEEEEeCCCCEEEEEECCCChhhCEEEEEEEEC--CCeEEEE
Confidence 689999999999977666899999999999998643 223799999999999999999998 4444444
Q ss_pred EEEEec--------------------ceeeEecCCceeeecCCcEEEEEEecCC-CCCceEEEeeCCEEeeeCCeeEEEE
Q psy14542 90 QVILGG--------------------ELVEIASSNQVVVDVGHRIELHCRVSPK-RLSSAKAWLKDGLVLRRNSDEVLVL 148 (371)
Q Consensus 90 ~l~v~~--------------------~~~~~~~~~~~~~~~g~~v~l~C~~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~ 148 (371)
.+.+.. .+|.+.......+.+|+.+.|.|.+.+. |. +.++|+|++..+.....+.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~v~~g~~v~l~C~v~g~~P~-p~i~W~k~g~~l~~~~~~~--- 165 (207)
T 3rbs_A 90 TVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVLLKCKVANIKKE-THIVWYKDEREISVDEKHD--- 165 (207)
T ss_dssp EEEECTHHHHHHHHHHHHHHHHHHHHTSSEEEEEEEEEEETTTEEEEEEEEESCCTT-CEEEEEETTEEECCCCCCC---
T ss_pred EEEEEccchhhhcccccccccccccCCCCceEecCCcEEcCCCcEEEEEEEeCCCCC-CEEEEEECCEECCCCCceE---
Confidence 443210 1344444333455899999999999998 66 8999999999886543210
Q ss_pred cccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeee
Q psy14542 149 DRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSL 213 (371)
Q Consensus 149 ~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v 213 (371)
. . .....|.|.++..+| .|.|+|.+.|. .|....+. .|.+
T Consensus 166 ----~-~---------------~~~~~L~I~~v~~~D-~G~Y~C~a~N~-~G~~~~~~---~L~~ 205 (207)
T 3rbs_A 166 ----F-K---------------DGICTLLITEFSKKD-AGIYEVILKDD-RGKDKSRL---KLVD 205 (207)
T ss_dssp ----C-S---------------SEEEEEEETTCCGGG-CEEEEEEEEET-TEEEEEEE---EECC
T ss_pred ----c-C---------------CCEEEEEECCCCccc-CEEEEEEEEcC-CCEEEEEE---EEec
Confidence 0 0 011469999999999 99999999999 88776665 5543
No 125
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane, phosphorylation, immunoglobulin domain, membrane, glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB: 2xy1_A*
Probab=99.90 E-value=1.2e-22 Score=159.72 Aligned_cols=180 Identities=18% Similarity=0.359 Sum_probs=133.9
Q ss_pred cceEEEeCCC-cEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC-------CeeEEEEccCCcCCCeEEEEEEEcC
Q psy14542 10 SLSIEMSPSG-QVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN-------SDEVLVLDRVQREDAGMYQCHVSAD 81 (371)
Q Consensus 10 ~~~~~~~p~~-~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~-------~~~~l~i~~~~~~d~G~Y~C~~~~~ 81 (371)
+|.+.+.+.. .+.+.+|++++|.|.+ .+.|.+.+.|++++..+... ...+|.|.+++.+|+|.|+|.+.+.
T Consensus 2 pP~i~~~~~~~~~~v~~G~~v~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 80 (192)
T 2va4_A 2 MPAISMPQKSFNATAERGEEMTFSCRA-SGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNK 80 (192)
T ss_dssp CCEEECSCCEEEEETTSCCCEEEECEE-ECSSCCEEEEEETTEECCCSSSEEEETTTTEEEECSCCGGGCEEEEEEEEET
T ss_pred CCcccCCCCCcEEEEecCCCEEEEEee-ccCCCCeEEEEECCeEcCCCccEEEeCCeeEEEEecCChhcCcEEEEEEEcc
Confidence 4555554432 2678899999999964 56678899999999887654 4568999999999999999999998
Q ss_pred CCCeEEEEEEEEecceeeEecCCceeeecCCcEEEEEEecCCCCCceEEEeeC--CEEeeeCCeeEEEEcccCcCCCeeE
Q psy14542 82 DDSAQMSAQVILGGELVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKD--GLVLRRNSDEVLVLDRVQREDAGMY 159 (371)
Q Consensus 82 ~~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~g~y 159 (371)
.+.....+.|.|. .+|.+...+...+..|+.+.|.|.+.+.+. +.+.|+++ +..+..... ...+.+
T Consensus 81 ~~~~~~~~~l~V~-~~p~~~~~~~~~~~~g~~v~l~C~~~~~p~-~~v~W~~~~~~~~~~~~~~----------~~~~~~ 148 (192)
T 2va4_A 81 AGEDEKQAFLQVF-VQPHIIQLKNETTYENGQVTLVCDAEGEPI-PEITWKRAVDGFTFTEGDK----------SLDGRI 148 (192)
T ss_dssp TEEEEEEEEEEEE-EEEEEEEECCEEECTTSEEEEEEEEEEESC-CEEEEEETTTTEEECTTCB----------CTTSCE
T ss_pred ccccceEEEEEEE-ccCcccccCcceEEeCCeEEEEEEecCCCC-CcEEEEeCCCCceeecccc----------ccCCcE
Confidence 8877788888888 566665555556678999999999988877 89999998 554433210 111212
Q ss_pred EEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeee
Q psy14542 160 QCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSL 213 (371)
Q Consensus 160 ~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v 213 (371)
...... ....|.|.++..+| .|.|+|.+.|. .|....++ .|.|
T Consensus 149 ~~~~~~------~~~~L~i~~~~~~d-~G~Y~C~a~n~-~g~~~~~~---~l~V 191 (192)
T 2va4_A 149 EVKGQH------GSSSLHIKDVKLSD-SGRYDCEAASR-IGGHQKSM---YLDI 191 (192)
T ss_dssp EEEEET------TEEEEEEESCCGGG-CEEEEEEEECS-SCEEEEEE---EEEE
T ss_pred EEeecc------CceEEEEecCCccc-CEEEEEEEEec-CCceEEEE---EEEe
Confidence 111111 12579999999999 99999999999 77766555 5554
No 126
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Probab=99.90 E-value=7.1e-23 Score=165.92 Aligned_cols=181 Identities=19% Similarity=0.269 Sum_probs=134.8
Q ss_pred ceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecC
Q psy14542 105 QVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDES 184 (371)
Q Consensus 105 ~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~ 184 (371)
...+.+|+.+.|.|.+.+.+. +.+.|++++..+....... ..........|.|.+++..
T Consensus 28 ~~~v~~G~~v~L~C~~~~~p~-~~v~W~~~~~~~~~~~~~~--------------------~~~~~~~~~~L~i~~~~~~ 86 (231)
T 3ojm_B 28 LHAVPAANTVKFRCPAGGNPM-PTMRWLKNGKEFKQEHRIG--------------------GYKVRNQHWSLIMESVVPS 86 (231)
T ss_dssp CEEEETTSCEEEECCEEEESC-CEEEEEETTEECCGGGSTT--------------------CCEEEGGGTEEEECSCCGG
T ss_pred eEEEccCCCEEEEEecccCCC-CeEEEEECCcccccccccc--------------------ceeeecCcceEEEecCCcc
Confidence 334589999999999988776 7999999998876542110 0111122357999999999
Q ss_pred CccceeEEEeeccccceeeeeeccceeeeecchhccccceee-eeeeeeeeecCCeEEEEEEeecCCCCceEEEe----C
Q psy14542 185 DRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMF-EKHRILNVKKDESVILPCSAQGNPLPTIKWYK----Q 259 (371)
Q Consensus 185 d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~-~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~----~ 259 (371)
| .|.|+|.+.+. .+...... .+.|..... .+|.+.. .+.... +..|+.+.|.|.+.+.|.+.+.|++ +
T Consensus 87 d-~G~Y~C~~~n~-~~~~~~~~---~l~V~~~~~-~~p~~~~~~~~~~~-~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~ 159 (231)
T 3ojm_B 87 D-KGNYTCVVENE-YGSINHTY---HLDVVERSR-HRPILQAGLPANAS-TVVGGDVEFVCKVYSDAQPHIQWIKHVEKN 159 (231)
T ss_dssp G-CEEEEEEEEET-TEEEEEEE---EEEEECCCC-CCCEECTTCSCCEE-EETTCCEEEECCEECSSCCEEEEEEECCBT
T ss_pred c-CEEEEEEEecc-cCcccccE---EEEEEcCCC-CCCceeeccCCceE-EEeCCcEEEEEEEecCCCCEEEEEECCCCC
Confidence 9 99999999988 66665555 677764322 1222222 233444 8899999999999999999999999 7
Q ss_pred CcccccCCceE-----------EecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEecCcc
Q psy14542 260 DSPVEESDRIQ-----------RIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKY 313 (371)
Q Consensus 260 ~~~~~~~~~~~-----------~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~ 313 (371)
|..+....... ...+.|.|.++..+|+|.|+|.|.|..|....++.|.|..+|.
T Consensus 160 g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~ 224 (231)
T 3ojm_B 160 GSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQQ 224 (231)
T ss_dssp TBSBCTTSCBCEEEEEECSTTCSCTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCC-
T ss_pred CccccCCCcceEeEecccccccCCccEEEEecCCHHHCeEEEEEEEeccceEeeEEEEEEecCCC
Confidence 77664443211 1235799999999999999999999999999999999998877
No 127
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}
Probab=99.90 E-value=9.3e-23 Score=163.67 Aligned_cols=169 Identities=19% Similarity=0.312 Sum_probs=132.4
Q ss_pred cccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeCCeeEEEEccCCcCCCeEEEEEEEcCCCCe-E
Q psy14542 8 KSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHVSADDDSA-Q 86 (371)
Q Consensus 8 ~~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~ 86 (371)
...++|.+.|.. ..+.+|+++.|.|.+ .+.|.+.+.|++++..+.......|.|.+++.+|+|.|+|.+.+..+.. .
T Consensus 16 ~~~~~i~~~p~~-~~v~~G~~v~L~C~~-~~~p~~~v~W~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~s 93 (218)
T 3k0w_A 16 PRGSKITVNPES-KAVLAGQFVKLCCRA-TGHPFVQYQWFKMNKEIPNGNTSELIFNAVHVKDAGFYVCRVNNNFTFEFS 93 (218)
T ss_dssp ---CCEEECCCC-EEEETTSBEEEECEE-TTTTSSEEEEEETTEECTTCCSSEEEETTCCGGGCEEEEEEEECTTCCEEC
T ss_pred CCCCEEEECCCC-eEEeCCCcEEEEeee-cCCCCCEEEEEECCEECCCCCCCEEEEccCChhhCeEeEEEEEcCCCCcee
Confidence 456789999988 999999999999955 6678889999999999877677899999999999999999999887654 4
Q ss_pred EEEEEEEecce--------------eeEecCCc-eeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEccc
Q psy14542 87 MSAQVILGGEL--------------VEIASSNQ-VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRV 151 (371)
Q Consensus 87 ~~~~l~v~~~~--------------~~~~~~~~-~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~ 151 (371)
..+.|.|...+ +.+...+. ..+..|+.+.|.|.+.+.+. +.+.|++++..+....
T Consensus 94 ~~~~l~V~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~v~L~C~~~g~p~-~~v~W~~~~~~~~~~~--------- 163 (218)
T 3k0w_A 94 QWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPI-PHYQWFKNELPLTHET--------- 163 (218)
T ss_dssp CCEEEEEECCCGGGCTTCCSBCCSSCEEEECCCCEEECTTCCEEEECEEEBSSC-CEEEEEETTEECTTCC---------
T ss_pred eEEEEEEEccCcccccccccccCCCceEEECCCceeecCCCcEEEEEEecccCC-CeEEEEECCEECCCCC---------
Confidence 45677776321 34444443 44589999999999988877 8999999998775432
Q ss_pred CcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccce-eeeeeccceeeee
Q psy14542 152 QREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGA-SLLSVNRGRLSLT 214 (371)
Q Consensus 152 ~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~-~~~~~~~~~l~v~ 214 (371)
...|.|.+++..| .|.|+|.+.|. .|. ....+ .|.|.
T Consensus 164 ---------------------~~~L~i~~v~~~d-~G~Y~C~a~n~-~g~~~s~~~---~l~V~ 201 (218)
T 3k0w_A 164 ---------------------KKLYMVPYVDLEH-QGTYWCHVYND-RDSQDSKKV---EIIID 201 (218)
T ss_dssp ---------------------SSEEEESSCCGGG-CEEEEEEEECS-SCEEECCCE---EEEEC
T ss_pred ---------------------CCEEEEeecChhc-CEEEEEEEEcC-CCCceeeeE---EEEEe
Confidence 1578899999999 99999999997 554 33333 55555
No 128
>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}
Probab=99.90 E-value=3.4e-23 Score=170.35 Aligned_cols=210 Identities=15% Similarity=0.188 Sum_probs=116.2
Q ss_pred CCcCCCeEEEEEEEcCCCCeEEEEEEEEecceeeEecCC-ceeeecCCcEEEEEEecCCCC----CceEEEeeCC--EEe
Q psy14542 66 VQREDAGMYQCHVSADDDSAQMSAQVILGGELVEIASSN-QVVVDVGHRIELHCRVSPKRL----SSAKAWLKDG--LVL 138 (371)
Q Consensus 66 ~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~-~~~~~~g~~v~l~C~~~~~~~----~~~v~W~~~~--~~~ 138 (371)
++.+|+|.|+|.+. |.....+.+.+. .++.+...+ ...+.+|++++|.|.+.+.++ .+.+.|++++ ..+
T Consensus 11 v~~~dsg~Y~C~a~---g~~~~~~~~~~~-~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~ 86 (254)
T 2c1o_A 11 VRPGTSVKLSCKAS---GYSFTNYWMNWL-RELVMTQSPLTLSVTIGQPASISCKSSQSLLYSNGKTYLNWLLQRPGQSP 86 (254)
T ss_dssp -------------------------------CCCEEEECSEEEECTTSCEEEEEEESSCCBCSSSCBCEEEEEECTTSCC
T ss_pred ecCCccEEEEEcCc---hhhhhhhhhhee-eceeEEeCCceEEecCCCcEEEEeeccCcccccCCCCceEEEEeCCCCCc
Confidence 68899999999998 333334444444 344444433 445589999999999988773 2789999843 211
Q ss_pred eeCCeeEEEEcc--cCcCCCeeEEEEEeCCceeEe---ccceEEEEEeecCCccceeEEEeecccccee-eeeeccceee
Q psy14542 139 RRNSDEVLVLDR--VQREDAGMYQCHIEDGKYHML---SSGELIIHQVDESDRYRSYQCRGVNKLTGAS-LLSVNRGRLS 212 (371)
Q Consensus 139 ~~~~~~~~~~~~--~~~~~~g~y~~~~~~~~~~~~---~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~-~~~~~~~~l~ 212 (371)
. .+.... ..... .+++... ....|.|.+++.+| +|.|+|.+.+. .+.. .... .+.
T Consensus 87 ~-----~~~~~~~~~~~~~---------~~r~~~~~~~~~~~L~I~~v~~~D-~G~Y~C~a~n~-~~~~~~~~~---~l~ 147 (254)
T 2c1o_A 87 K-----RLIYLVSKLDSGD---------PDRFTGSGSGTDFTLKISRVEAED-LGIYYCVQGSH-FPPTFGAGT---KLE 147 (254)
T ss_dssp E-----EEEETTTEECTTC---------CTTEEEEEETTEEEEEESSCCGGG-CSEEEEEECSS-SSCEEBCCE---EEE
T ss_pred e-----EEEEeccccCCCc---------cceEEEecCCCEEEEEECcCCccc-CEEEEEEEEcC-cceEecCCE---EEE
Confidence 1 011000 00001 1233222 22479999999999 99999999987 3321 1122 455
Q ss_pred eecchhccccceeeeeeeeeeeecCCeEEEEEEeecC-CC-CceEEEeCCcccccCC-c----------eEEecceEEEe
Q psy14542 213 LTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGN-PL-PTIKWYKQDSPVEESD-R----------IQRIGSSLSIS 279 (371)
Q Consensus 213 v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-~~v~W~~~~~~~~~~~-~----------~~~~~~~l~i~ 279 (371)
|... ..+|.+........ ...|+.++|.|.+.|. |+ +.+.|+++|..+.... . .....+.|.|.
T Consensus 148 V~~~--~~~P~v~~~~~~~~-~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~~~L~i~ 224 (254)
T 2c1o_A 148 LKRA--DAAPTVSIFPPSSE-QLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLT 224 (254)
T ss_dssp ECCC--CBCCEEEEECCCHH-HHHTTEEEEEEEEEEEBSSCCEEEEEESSSEECTTEEEEECCCCTTTCCEEEEEEEEEE
T ss_pred ECCC--CCCCeeEeecCChh-hccCCcEEEEEEEecccCCCcEEEEEECCCcccCcceeccccccCCCCcEEEEEEEEec
Confidence 5421 13555555443333 4468899999999884 44 4699999998776541 1 01123579999
Q ss_pred ccCCCCCeEEEEEEEcCCCCce
Q psy14542 280 HVEESDSGVWNCVANNSEGQDK 301 (371)
Q Consensus 280 ~~~~~d~G~Y~C~a~n~~g~~~ 301 (371)
++..+|+|.|+|.|.|......
T Consensus 225 ~~~~~d~G~Y~C~a~n~~~~~~ 246 (254)
T 2c1o_A 225 KDEYERHNSYTCEATHKTSTSP 246 (254)
T ss_dssp HHHHHTCCEEEEEEECTTCSSC
T ss_pred cccccCCCeEEEEEEcCCCCCc
Confidence 9999999999999999887653
No 129
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A
Probab=99.90 E-value=4.8e-23 Score=164.66 Aligned_cols=197 Identities=21% Similarity=0.352 Sum_probs=136.8
Q ss_pred EEecceeeEecCCce-eeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeE
Q psy14542 92 ILGGELVEIASSNQV-VVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHM 170 (371)
Q Consensus 92 ~v~~~~~~~~~~~~~-~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~ 170 (371)
.+...+|.+...+.. .+.+|+.+.|.|.+.+.+. +.+.|++++..+...... .........++...
T Consensus 4 ~~~~~pp~i~~~p~~~~v~~G~~v~l~C~~~~~p~-~~v~W~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~- 70 (212)
T 2v9r_A 4 RQEDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPT-PTIEWYKGGERVETDKDD-----------PRSHRMLLPSGSLF- 70 (212)
T ss_dssp --CCEEEEEEECCCCEEECTTCCEEECCEEEEESC-CEEEEEETTEECCCTTTC-----------TTCSEEECTTSCEE-
T ss_pred CcccCCcceecCCCceEEeCCCcEEEEEEcCCCCC-CEEEEEECCEEeeccccc-----------cccceEEecCCcEE-
Confidence 344456666665554 4489999999999988777 799999999887643210 00000000011110
Q ss_pred eccceEEEEEeecCCccceeEEEeecccccee-eeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEe-ec
Q psy14542 171 LSSGELIIHQVDESDRYRSYQCRGVNKLTGAS-LLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSA-QG 248 (371)
Q Consensus 171 ~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~-~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~-~~ 248 (371)
...+.|.+++..| .|.|+|.+.+. .+.. .... .+.|.. .++.+...+.... +..|+.+.|.|.+ .+
T Consensus 71 --~~~l~i~~~~~~d-~G~Y~C~~~n~-~g~~~~~~~---~l~V~~----~~~~~~~~~~~~~-~~~g~~~~l~C~~~~~ 138 (212)
T 2v9r_A 71 --FLRIVHGRKSRPD-EGVYVCVARNY-LGEAVSHDA---SLEVAI----LRDDFRQNPSDVM-VAVGEPAVMECQPPRG 138 (212)
T ss_dssp --ESSCCCCSSCCCS-CEEEEEEEEET-TEEEECCCE---EEEECE----ECSSCSBCCCCEE-EETTSCEEEECBCCCE
T ss_pred --EEEEEecCCCccc-CeEEEEEEECC-CCceeecce---EEEEEe----ccccceeCCCceE-ecCCCcEEEEEecCCC
Confidence 0245566778999 99999999987 5543 2333 566653 2333444444455 8999999999998 88
Q ss_pred CCCCceEEEeCCcccccC-CceEEecceEEEeccCCCCCeEEEEEEEcCCCCcee-EEEEEEecCcc
Q psy14542 249 NPLPTIKWYKQDSPVEES-DRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKM-QLFIQYAHGKY 313 (371)
Q Consensus 249 ~p~~~v~W~~~~~~~~~~-~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~-~~~l~v~~~p~ 313 (371)
.|.+.+.|++++..+... .++...++.|.|.++..+|+|.|+|.|.|..|.... .+.|.|.++|.
T Consensus 139 ~p~~~v~W~~~~~~l~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~s~~~~l~V~~~P~ 205 (212)
T 2v9r_A 139 HPEPTISWKKDGSPLDDKDERITIRGGKLMITYTRKSDAGKYVCVGTNMVGERESEVAELTVLERPS 205 (212)
T ss_dssp ESCCEEEEEETTEEECTTSTTEEEETTEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC---
T ss_pred CCCCEEEEEECCccCCCCcceEEccCCeEEEeeCCHhhCeeEEEEEecccCceecceEEEEEEeCch
Confidence 999999999999988754 345567789999999999999999999999998654 48999998888
No 130
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.90 E-value=1.1e-24 Score=187.62 Aligned_cols=199 Identities=20% Similarity=0.301 Sum_probs=147.5
Q ss_pred CCeEEEEEEEcCCCCeEEEEEEEEecceeeEecCCc-eeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEE
Q psy14542 70 DAGMYQCHVSADDDSAQMSAQVILGGELVEIASSNQ-VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVL 148 (371)
Q Consensus 70 d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~-~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~ 148 (371)
|.|.|+|.+.+.... +.+.+. .+|.+...+. ..+.+|+.+.|.|.+.+.+. +.+.|++++..+.....
T Consensus 136 ~~~~~~C~~~~~l~~----l~~~~c-~~P~i~~~~~~~~v~~G~~v~L~C~~~g~p~-p~i~W~~~~~~~~~~~~----- 204 (347)
T 2ifg_A 136 PEQKLQCHGQGPLAH----MPNASC-GVPTLKVQVPNASVDVGDDVLLRCQVEGRGL-EQAGWILTELEQSATVM----- 204 (347)
T ss_dssp GGGCCCCSSSSCSSC----CCCTTC-CCCEEEEECCSSCCBTTCCEEEEEEEECSSC-CCCCEEESCCCSSEEEC-----
T ss_pred cccCCCCCCChHHhc----CCcccC-CCCceeccCCceEEeCCCcEEEEEEEecCCC-CEEEEEcCCceeecccc-----
Confidence 568899987652211 111222 3444444433 34489999999999988887 89999998865332110
Q ss_pred cccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccc-eeEEEeeccccceeeeeeccceeeeecchhccccceeee
Q psy14542 149 DRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYR-SYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFE 227 (371)
Q Consensus 149 ~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g-~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~ 227 (371)
......++.|.|.+++..| .| .|+|.+.+. .|...... .+.|. .+|.+
T Consensus 205 ------------------~~~~~~~~~L~i~~v~~~D-~G~~Y~C~a~n~-~g~~~~~~---~l~V~-----~~P~i--- 253 (347)
T 2ifg_A 205 ------------------KSGGLPSLGLTLANVTSDL-NRKNVTCWAEND-VGRAEVSV---QVNVS-----FPASV--- 253 (347)
T ss_dssp ------------------CCCCSSEEEEEEESCCSTT-TTCCEEECCEET-TEECCEEE---CCCCB-----EEEEE---
T ss_pred ------------------cceecccceEEEeeCChHH-CCCeEEEEEEcC-CCCEEEEE---EEEEc-----CCCee---
Confidence 1111223689999999999 99 999999998 77666655 67776 55654
Q ss_pred eeeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccCCceEE-----------ecceEEEeccCCCCCeEEEEEEEcC
Q psy14542 228 KHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQR-----------IGSSLSISHVEESDSGVWNCVANNS 296 (371)
Q Consensus 228 ~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~-----------~~~~l~i~~~~~~d~G~Y~C~a~n~ 296 (371)
.... +..|+.+.|.|.+.|.|.|.+.|+++|..+........ .+++|.|.++..+|+|.|+|.|.|.
T Consensus 254 -~~~~-~~~g~~v~l~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~ 331 (347)
T 2ifg_A 254 -QLHT-AVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANP 331 (347)
T ss_dssp -EECC-CEESSSEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEECCCCTTCCCEEEEEEESSCCGGGCEEEEEEEEET
T ss_pred -eecc-CccCceEEEEEEeeecCCCcEEEEeCCEECCCCcceeeEEEeecCCCcccceEEEECCCCcccCceEEEEEecC
Confidence 1122 66799999999999999999999999998876554332 2456999999999999999999999
Q ss_pred CCCceeEEEEEEecCc
Q psy14542 297 EGQDKMQLFIQYAHGK 312 (371)
Q Consensus 297 ~g~~~~~~~l~v~~~p 312 (371)
.|....++.|.|.++|
T Consensus 332 ~G~~~~~~~l~V~~~P 347 (347)
T 2ifg_A 332 FGQASASIMAAFMDNP 347 (347)
T ss_dssp TEEEEEEEEECSCCCC
T ss_pred CCceeeEEEEEecCCC
Confidence 9999999999988765
No 131
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}
Probab=99.90 E-value=1.1e-22 Score=163.26 Aligned_cols=174 Identities=20% Similarity=0.325 Sum_probs=132.4
Q ss_pred eeEecCCc-eeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceE
Q psy14542 98 VEIASSNQ-VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGEL 176 (371)
Q Consensus 98 ~~~~~~~~-~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l 176 (371)
+.+...+. ..+.+|+.+.|.|.+.+.+. +.+.|++++..+.... ...|
T Consensus 19 ~~i~~~p~~~~v~~G~~v~L~C~~~~~p~-~~v~W~~~~~~~~~~~------------------------------~~~L 67 (218)
T 3k0w_A 19 SKITVNPESKAVLAGQFVKLCCRATGHPF-VQYQWFKMNKEIPNGN------------------------------TSEL 67 (218)
T ss_dssp CCEEECCCCEEEETTSBEEEECEETTTTS-SEEEEEETTEECTTCC------------------------------SSEE
T ss_pred CEEEECCCCeEEeCCCcEEEEeeecCCCC-CEEEEEECCEECCCCC------------------------------CCEE
Confidence 34444443 34589999999999988776 8999999998765431 1578
Q ss_pred EEEEeecCCccceeEEEeecccccee-eeeeccceeeeecchhc----------cccceeeeeeeeeeeecCCeEEEEEE
Q psy14542 177 IIHQVDESDRYRSYQCRGVNKLTGAS-LLSVNRGRLSLTENKRL----------LSAAKMFEKHRILNVKKDESVILPCS 245 (371)
Q Consensus 177 ~i~~~~~~d~~g~y~C~~~~~~~~~~-~~~~~~~~l~v~~~~~~----------~~p~~~~~~~~~~~~~~g~~~~l~C~ 245 (371)
.|.+++..| .|.|+|.+.+. .+.. .... .+.|...... .+|.+...+.... +..|+.+.|.|.
T Consensus 68 ~i~~v~~~d-~G~Y~C~~~n~-~~~~~s~~~---~l~V~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-v~~G~~v~L~C~ 141 (218)
T 3k0w_A 68 IFNAVHVKD-AGFYVCRVNNN-FTFEFSQWS---QLDVCDIPESFQRSVDGVSESKLQICVEPTSQK-LMPGSTLVLQCV 141 (218)
T ss_dssp EETTCCGGG-CEEEEEEEECT-TCCEECCCE---EEEEECCCGGGCTTCCSBCCSSCEEEECCCCEE-ECTTCCEEEECE
T ss_pred EEccCChhh-CeEeEEEEEcC-CCCceeeEE---EEEEEccCcccccccccccCCCceEEECCCcee-ecCCCcEEEEEE
Confidence 899999999 99999999987 4432 3333 5666532110 1245555555555 899999999999
Q ss_pred eecCCCCceEEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCCC-ceeEEEEEEecCcc
Q psy14542 246 AQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQ-DKMQLFIQYAHGKY 313 (371)
Q Consensus 246 ~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~-~~~~~~l~v~~~p~ 313 (371)
+.+.|.+.+.|++++..+.... ...|.|.++..+|+|.|+|.|.|..|. .+..+.|.|...+.
T Consensus 142 ~~g~p~~~v~W~~~~~~~~~~~-----~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~~~ 205 (218)
T 3k0w_A 142 AVGSPIPHYQWFKNELPLTHET-----KKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELNN 205 (218)
T ss_dssp EEBSSCCEEEEEETTEECTTCC-----SSEEEESSCCGGGCEEEEEEEECSSCEEECCCEEEEECC---
T ss_pred ecccCCCeEEEEECCEECCCCC-----CCEEEEeecChhcCEEEEEEEEcCCCCceeeeEEEEEeCCcc
Confidence 9999999999999998887653 468999999999999999999998887 67778888876554
No 132
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}
Probab=99.90 E-value=2e-22 Score=157.98 Aligned_cols=173 Identities=23% Similarity=0.379 Sum_probs=128.8
Q ss_pred cceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC--------CeeEEEEccCCcCCCeEEEEEEEcC
Q psy14542 10 SLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN--------SDEVLVLDRVQREDAGMYQCHVSAD 81 (371)
Q Consensus 10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~--------~~~~l~i~~~~~~d~G~Y~C~~~~~ 81 (371)
+|.+...|.. ..+.+|++++|.|.+ .+.|.+.+.|++++..+... .+.+|.|.+++.+|+|.|+|.+.+.
T Consensus 2 ~~~~~~~~~~-~~v~~G~~v~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~ 79 (189)
T 2v5t_A 2 MLTFREVVSP-QEFKQGEDAEVVCRV-SSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVE 79 (189)
T ss_dssp CCEEEECCSS-EEEETTSCEEECCEE-ECSSCCEEEEEC-----CBCCCTTEEECTTSCEEETTCCGGGCEEEEEEEEET
T ss_pred CceeeccCCC-EEEeCCCcEEEEEEE-cCCCCCEEEEEECCccceeccCCeEEEecCCCEEEeeCCHhHCcEEEEEEEEc
Confidence 5677777887 899999999999965 45678899999998877642 4567999999999999999999987
Q ss_pred CCCe--EEEEEEEEecceeeEecCCce---eeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCC
Q psy14542 82 DDSA--QMSAQVILGGELVEIASSNQV---VVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDA 156 (371)
Q Consensus 82 ~~~~--~~~~~l~v~~~~~~~~~~~~~---~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (371)
.+.. ...+.|.|. .+|.+...+.. .+..|+.+.|.|.+.+.|. +.+.|++++..+.......+
T Consensus 80 ~~~~~~~~~~~l~v~-~~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~-~~v~W~~~g~~~~~~~~~~~---------- 147 (189)
T 2v5t_A 80 ARGEIDFRDIIVIVN-VPPAISMPQKSFNATAERGEEMTFSCRASGSPE-PAISWFRNGKLIEENEKYIL---------- 147 (189)
T ss_dssp TTTEEEEEEEEEEEE-EEEEEECSCCEEEEETTSCCCEEEECEEEEESC-CEEEEEETTEECCCSSSEEE----------
T ss_pred CCCceEEEEEEEEec-CCCCcccccccccccccCCCcEEEEEEEccCCC-CeEEEEECCEECcCCCcEEE----------
Confidence 6554 345666666 45555544332 2378999999999988877 89999999998765432111
Q ss_pred eeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeee
Q psy14542 157 GMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLT 214 (371)
Q Consensus 157 g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~ 214 (371)
...+..|.|.++..+| .|.|+|.+.|. .|....+. .|.|.
T Consensus 148 -------------~~~~~~L~i~~~~~~d-~G~Y~C~a~n~-~g~~~~~~---~l~V~ 187 (189)
T 2v5t_A 148 -------------KGSNTELTVRNIINSD-GGPYVCRATNK-AGEDEKQA---FLQVF 187 (189)
T ss_dssp -------------ETTTTEEEECSCCGGG-CEEEEEEEEET-TEEEEEEE---EEEEE
T ss_pred -------------ecCCCEEEEcCCChhh-CeeEEEEEEeC-CCceeEEE---EEEEE
Confidence 0112679999999999 99999999999 77766666 66654
No 133
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Probab=99.90 E-value=5.5e-23 Score=162.83 Aligned_cols=181 Identities=24% Similarity=0.362 Sum_probs=132.4
Q ss_pred ceeeecCCcEEEEEE-ecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeec
Q psy14542 105 QVVVDVGHRIELHCR-VSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDE 183 (371)
Q Consensus 105 ~~~~~~g~~v~l~C~-~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~ 183 (371)
...+.+|+.+.|.|. +.+.+..+.+.|++++..+..... ........+..|.|.+++.
T Consensus 17 ~~~v~~G~~v~L~C~~~~~~p~~~~v~W~~~~~~~~~~~~---------------------~~~~~~~~~~~L~i~~v~~ 75 (201)
T 3s97_C 17 EVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMD---------------------KRRFVSQTNGNLYIANVEA 75 (201)
T ss_dssp CEEEETTCCEEECCCCCSEESSCCEEEEEESSTTCBCCCS---------------------SSEEECTTTCCEEESSCCG
T ss_pred eEEEECCCCEEEeccccccCCCceEEEEEECCceeeeeeC---------------------CCeEEEcCCCeEEECcCCc
Confidence 344589999999999 666544379999998876542211 0111222346799999999
Q ss_pred CCccceeEEEeeccccceeeeeeccceeeeecc--hhccccceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEeCCc
Q psy14542 184 SDRYRSYQCRGVNKLTGASLLSVNRGRLSLTEN--KRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDS 261 (371)
Q Consensus 184 ~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~--~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~ 261 (371)
+| .|.|+|.+.+. .+..........+.+... ....+|.+........ +..|+.+.|.|.+.+.|.+.+.|++++.
T Consensus 76 ~d-~G~Y~C~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-~~~g~~~~l~C~~~g~p~p~v~W~~~~~ 152 (201)
T 3s97_C 76 SD-KGNYSCFVSSP-SITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVY-ALMGQNVTLECFALGNPVPDIRWRKVLE 152 (201)
T ss_dssp GG-CEEEEEEEEEG-GGTEEEECCCEEEEEECCSSCCCEEEEEEEECCCEE-EETTCCEEEEEEEEEESCCEEEEEETTB
T ss_pred cc-CeEEEEEEEec-CCCcchhhcccceeeccccccCCCCCceEecCCceE-EecCCcEEEEEEccCCCCCceEEEeCCC
Confidence 99 99999999987 333332211112222211 1113455555554555 8999999999999999999999999999
Q ss_pred ccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEe
Q psy14542 262 PVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYA 309 (371)
Q Consensus 262 ~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 309 (371)
.+....++...++.|.|.++..+|+|.|+|.|.|..|....++.|.|.
T Consensus 153 ~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~ 200 (201)
T 3s97_C 153 PMPSTAEISTSGAVLKIFNIQLEDEGIYECEAENIRGKDKHQARIYVQ 200 (201)
T ss_dssp CCCTTCEEETTTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred cCCCceeecCCCCEEEEccCChhhCEEEEEEEEecCCceeeeEEEEEe
Confidence 887665555567899999999999999999999999999999988885
No 134
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*
Probab=99.90 E-value=6.6e-23 Score=162.37 Aligned_cols=168 Identities=15% Similarity=0.225 Sum_probs=126.1
Q ss_pred eeeEecCCc-eeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccce
Q psy14542 97 LVEIASSNQ-VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGE 175 (371)
Q Consensus 97 ~~~~~~~~~-~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~ 175 (371)
.|.+...+. ..+.+|+.++|.|.+.+.+.+..+.|++++..+.... ..
T Consensus 7 ~p~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~~v~W~k~g~~l~~~~-------------------------------~~ 55 (204)
T 3sgj_C 7 KAVVFLEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQA-------------------------------SS 55 (204)
T ss_dssp BCEEEEESCCSEEETTCCEEEEEECCSSSSCCCEEEEETTEEESCCS-------------------------------SE
T ss_pred CCeEEEcCCCeEEECCCCEEEEEcCCCCCCCcEEEEEECCEEcccCc-------------------------------cE
Confidence 344444444 4568999999999999887645699999998775431 57
Q ss_pred EEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecC-CCCce
Q psy14542 176 LIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGN-PLPTI 254 (371)
Q Consensus 176 l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~~v 254 (371)
|.|.+++.+| +|.|+|.+.+. . ..... .|.|. .+|.+...+. .. +.+|+.+.|.|.+.+. |.+.+
T Consensus 56 L~i~~v~~~D-~G~Y~C~a~n~-~--~s~~~---~l~V~-----~~p~~~~~~~-~~-v~~G~~v~L~C~~~~~~p~~~v 121 (204)
T 3sgj_C 56 YFIDAATVDD-SGEYRCQTQLS-T--LSDPV---QLEVH-----IGWLLLQAPR-WV-FKEEDPIHLRCHSWKNTALHKV 121 (204)
T ss_dssp EEESSCCGGG-CEEEEEEETTS-B--CCCCE---EEEEE-----CSSEEEECSC-SE-EETTCCEEEEEEEGGGCCCEEE
T ss_pred EEEecccccC-CEEEEEEeCCC-c--ccccE---EEEEe-----cCceEecCCc-ee-EeCCCcEEEEEEecCCCCCceE
Confidence 8999999999 99999999875 2 22233 66666 4444443333 34 8899999999999765 56889
Q ss_pred EEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEc-CCCCceeEEEEEEecCcc
Q psy14542 255 KWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANN-SEGQDKMQLFIQYAHGKY 313 (371)
Q Consensus 255 ~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n-~~g~~~~~~~l~v~~~p~ 313 (371)
.|+++|..+... ..++.|.|.++..+|+|.|+|.|.| ..+..+..+.|.|.+++.
T Consensus 122 ~W~k~g~~~~~~----~~~~~L~i~~v~~~D~G~Y~C~a~n~~~~~~s~~~~l~V~~~~~ 177 (204)
T 3sgj_C 122 TYLQNGKGRKYF----HHNSDFYIPKATLKDSGSYFCRGLVGSKNVSSETVQITITQGLA 177 (204)
T ss_dssp EEEETTEEEEEE----EECCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC---
T ss_pred EEEECCcEeecc----cCCceEEECcCCcccCEEEEEEEEeCCCceecCcEEEEEeCcCC
Confidence 999999876432 3467899999999999999999999 555667788899987665
No 135
>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}
Probab=99.90 E-value=6.8e-23 Score=159.81 Aligned_cols=163 Identities=18% Similarity=0.191 Sum_probs=119.1
Q ss_pred ceeeEecCCceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccce
Q psy14542 96 ELVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGE 175 (371)
Q Consensus 96 ~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~ 175 (371)
.+|.+...+...+.+|++++|.|.+.+ +. +.+.|+|++..... ....
T Consensus 7 ~~P~i~~~p~~~v~~G~~v~L~C~~~~-~~-~~~~W~k~g~~~~~-------------------------------~~~~ 53 (184)
T 2gi7_A 7 PKPSLQALPSSLVPLEKPVTLRCQGPP-GV-DLYRLEKLSSSRYQ-------------------------------DQAV 53 (184)
T ss_dssp CCCEEEEESCSEEETTCCEEEEEECST-TC-SEEEEEETTTCCEE-------------------------------SSSE
T ss_pred CCCeEEeCCCccccCCCcEEEEEeCCC-CC-CEEEEEECCccccC-------------------------------cccE
Confidence 455566556556689999999999987 44 79999998764110 1267
Q ss_pred EEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecCCCCceE
Q psy14542 176 LIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIK 255 (371)
Q Consensus 176 l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~ 255 (371)
|.|.+++.+| +|.|+|.+.|. .+....+. ...+.|.. ...+|.+...+ ... +..|+.++|.|.+.+.+ +.+.
T Consensus 54 L~i~~v~~~D-~G~Y~C~a~n~-~g~~~~s~-~~~l~V~~--~~~~p~i~~~p-~~~-v~~G~~v~l~C~~~~~~-~~~~ 125 (184)
T 2gi7_A 54 LFIPAMKRSL-AGRYRCSYQNG-SLWSLPSD-QLELVATG--VFAKPSLSAQP-GPA-VSSGGDVTLQCQTRYGF-DQFA 125 (184)
T ss_dssp EEESSCCGGG-CEEEEEEEEET-TEEBCCCC-CEEEEEES--SSCCCEEEEEC-CCS-SCCTTCEEEEEECSSCC-CEEE
T ss_pred EEECcCChhh-CceEEEEEEcC-CCccCCCC-CEEEEecC--cCCCCEEEeCC-Cce-ecCCCcEEEEEEcCCCC-cEEE
Confidence 9999999999 99999999987 44322221 11455532 11355555544 334 88999999999987654 6999
Q ss_pred EEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCCC
Q psy14542 256 WYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQ 299 (371)
Q Consensus 256 W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~ 299 (371)
|+++|..+.........++.|.|.++..+|+|.|+|.|.|..+.
T Consensus 126 w~k~g~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~~ 169 (184)
T 2gi7_A 126 LYKEGDPAPYKNPERWYRASFPIITVTAAHSGTYRCYSFSSRDP 169 (184)
T ss_dssp EEECCCCTTSCCCCEEEEESSSEEEETTCCSEEEEEEEECTTST
T ss_pred EEECCCcCcceecCCCceEEEEEccCCccCCeEEEEEEEeCCCC
Confidence 99999887654444455678999999999999999999998653
No 136
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X
Probab=99.90 E-value=8.6e-23 Score=163.37 Aligned_cols=190 Identities=14% Similarity=0.209 Sum_probs=131.7
Q ss_pred eeecCCcEEEEEEecCCCC---CceEEEeeCCEEeeeCCeeEEEEcc-cCcCC-CeeEEEEEeCCceeEe------ccce
Q psy14542 107 VVDVGHRIELHCRVSPKRL---SSAKAWLKDGLVLRRNSDEVLVLDR-VQRED-AGMYQCHIEDGKYHML------SSGE 175 (371)
Q Consensus 107 ~~~~g~~v~l~C~~~~~~~---~~~v~W~~~~~~~~~~~~~~~~~~~-~~~~~-~g~y~~~~~~~~~~~~------~~~~ 175 (371)
.+.+|++++|.|.+.+.+. .+.+.|++++..........+...+ ..... ...| .++..+. .+..
T Consensus 11 ~v~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~r~~~~~~~~~~~~~~ 85 (214)
T 3jz7_A 11 EKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDL-----KGRVHFTSNDVKSGDAS 85 (214)
T ss_dssp EEETTSCEEECCBCCCCTTCCSCCEEEEEEEESSSSCCSEEEEEEETTEEECCCCGGG-----TTTEEESCSCGGGTBCC
T ss_pred EEecCCCEEEEEEEecCCCCCCcEEEEEEecCCCCCCCceEEEEEeCCeEccccCCcc-----ccceEEeccCccCCccc
Confidence 3489999999999987663 2699999854211000000000000 00000 0000 1233332 2467
Q ss_pred EEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEe-ecCCCCce
Q psy14542 176 LIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSA-QGNPLPTI 254 (371)
Q Consensus 176 l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~v 254 (371)
|.|.+++.+| +|.|+|.+.+. .+...... .|.|. .+|.+........ +..|+.+.|.|.+ .+.|.+.+
T Consensus 86 L~i~~v~~~D-~G~Y~C~~~~~-~~~~~~~~---~l~V~-----~~p~~~~~~~~~~-~~~g~~v~l~C~~~~g~p~~~v 154 (214)
T 3jz7_A 86 INVTNLQLSD-IGTYQCKVKKA-PGVANKKF---LLTVL-----VKPSGTRCFVDGS-EEIGNDFKLKCEPKEGSLPLQF 154 (214)
T ss_dssp EEECSCCGGG-CEEEEEEEEET-TEEEEEEE---EEEEE-----CCCBSCEEEEESC-CBTTCCEEEEEECSBCCSSCEE
T ss_pred EEEccCChhh-CeEEEEEEEeC-CCccccEE---EEEEE-----cCCCCceeeeecc-eecCCcEEEEecCCCCCCCCEE
Confidence 9999999999 99999999988 66666666 78887 5565555554545 8899999999999 78999999
Q ss_pred EEEeCCc--ccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEecCc
Q psy14542 255 KWYKQDS--PVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGK 312 (371)
Q Consensus 255 ~W~~~~~--~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p 312 (371)
.|++++. .+.........++.|.|.++..+|+|.|+|.|.|..|....++.|.|..||
T Consensus 155 ~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~P~ 214 (214)
T 3jz7_A 155 EWQKLSDSQTMPTPWLAEMTSPVISVKNASSEYSGTYSCTVQNRVGSDQCMLRLDVVPPS 214 (214)
T ss_dssp EEEECSTTCCCCGGGGGGTTSSEEEECSCCGGGCEEEEEEEECSSCEEEEEEEECCBCCC
T ss_pred EEEECCCCCccCccceeccCCCEEEEecCCHHHCEEEEEEEEcCCCcEEEEEEEEEeCCC
Confidence 9999543 343333333446789999999999999999999999999999999888554
No 137
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Probab=99.90 E-value=2.1e-22 Score=158.66 Aligned_cols=168 Identities=19% Similarity=0.311 Sum_probs=130.1
Q ss_pred cceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC----------C--------eeEEEEccCCcCCC
Q psy14542 10 SLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN----------S--------DEVLVLDRVQREDA 71 (371)
Q Consensus 10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~----------~--------~~~l~i~~~~~~d~ 71 (371)
+|.+...|.. ..+.+|++++|.|.+..+.|.+.+.|++++..+... . ...|.|.+++.+|+
T Consensus 2 ~~~~~~~p~~-~~v~~G~~v~l~C~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~ 80 (195)
T 2c5d_C 2 ESPFVGNPGN-ITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDT 80 (195)
T ss_dssp CCSEEECCCC-EEECTTCCEEEEEEEEEESSCCCCEEEETTEECCSCEEEEEEEECSSSTTSEEEEEEEEEESSCCSTTC
T ss_pred CCeeccChhh-eEEecCCcEEEecccccCCCCcEEEEEECCEEcccCCCCceEEEEccccccceeeccEEEEEeccccCC
Confidence 5678888888 999999999999966536788899999999887643 1 46899999999999
Q ss_pred eEEEEEEEcCCCCeE-EEEEEEEecceeeEecCCc-eeeecCCcEEEEEEecCCCCCc-eEEEeeCCEEeeeCCeeEEEE
Q psy14542 72 GMYQCHVSADDDSAQ-MSAQVILGGELVEIASSNQ-VVVDVGHRIELHCRVSPKRLSS-AKAWLKDGLVLRRNSDEVLVL 148 (371)
Q Consensus 72 G~Y~C~~~~~~~~~~-~~~~l~v~~~~~~~~~~~~-~~~~~g~~v~l~C~~~~~~~~~-~v~W~~~~~~~~~~~~~~~~~ 148 (371)
|.|+|.+.+..+... ..+.|.|. .+|.+...+. ..+.+|+.+.|.|.+.+.|. + .+.|++++..+......
T Consensus 81 G~Y~C~~~~~~~~~~~~~~~l~V~-~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~-p~~v~W~~~~~~~~~~~~~---- 154 (195)
T 2c5d_C 81 GQYQCLVFLGHQTFVSQPGYVGLE-GLPYFLEEPEDRTVAANTPFNLSCQAQGPPE-PVDLLWLQDAVPLATAPGH---- 154 (195)
T ss_dssp EEEEEEEEETTEEEECCCEEEEEC-CSCEEEECCCCEEECTTCCEEEEEEEECSSC-CCEEEEEESSCBSSSSTTS----
T ss_pred cEEEEEEEeCCCceecccEEEEEe-cCCeEEcCCCcEEEcCCCEEEEEeECCCCCC-CCEEEEEECCEeccCCCCc----
Confidence 999999998765543 33788887 4555555444 34488999999999999887 6 99999999877654210
Q ss_pred cccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceee-eeeccceeee
Q psy14542 149 DRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASL-LSVNRGRLSL 213 (371)
Q Consensus 149 ~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~-~~~~~~~l~v 213 (371)
..+..|.|.+++ | +|.|+|.+.|. .|... ... .|.|
T Consensus 155 ----------------------~~~~~L~i~~~~--d-~G~Y~C~a~N~-~g~~~s~~~---~l~V 191 (195)
T 2c5d_C 155 ----------------------GPQRSLHVPGLN--K-TSSFSCEAHNA-KGVTTSRTA---TITV 191 (195)
T ss_dssp ----------------------SCCEEEEECCCS--S-CEEEEEEEEET-TEEEECCCE---EEEE
T ss_pred ----------------------CCCCeEEEcccc--c-CceEEEEEEcC-CCceEEEEE---EEEE
Confidence 122578888887 7 99999999998 66553 444 5555
No 138
>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4
Probab=99.90 E-value=1.3e-22 Score=162.11 Aligned_cols=180 Identities=18% Similarity=0.252 Sum_probs=128.1
Q ss_pred eeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCC
Q psy14542 106 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESD 185 (371)
Q Consensus 106 ~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d 185 (371)
..+.+|+.+.|.|.+.+.+. +.+.|++++..+.... ..-....... ..++... ...|.|.+++.+|
T Consensus 11 ~~v~~G~~v~L~C~~~~~p~-~~v~W~~~~~~~~~~~---~~~~~~~~~~---------~~r~~~~-~~~L~i~~v~~~D 76 (212)
T 1f97_A 11 VQVPENESIKLTCTYSGFSS-PRVEWKFVQGSTTALV---CYNSQITAPY---------ADRVTFS-SSGITFSSVTRKD 76 (212)
T ss_dssp EEEETTCCEEEECEEESCSS-EEEEEEEEETTEEEEE---EETTEECGGG---------TTTEEEE-TTEEEESCCCGGG
T ss_pred eEEEcCCCEEEEeEeCCCCC-cEEEEEECCCceeeEE---ecCCcccccc---------cCcEEee-ceeEEEcccCccc
Confidence 34489999999999998776 8999999775432110 0000000000 1233333 2789999999999
Q ss_pred ccceeEEEeeccccc--eeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEE-eecCCCCceEEEeCCc-
Q psy14542 186 RYRSYQCRGVNKLTG--ASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCS-AQGNPLPTIKWYKQDS- 261 (371)
Q Consensus 186 ~~g~y~C~~~~~~~~--~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~-~~~~p~~~v~W~~~~~- 261 (371)
.|.|+|.+.+. .+ ...... .|.|. .+|.+........ +..|+.+.|.|. +.+.|.+.+.|++++.
T Consensus 77 -~G~Y~C~~~~~-~g~~~~~~~~---~l~V~-----~~p~~~~~~~~~~-~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~ 145 (212)
T 1f97_A 77 -NGEYTCMVSEE-GGQNYGEVSI---HLTVL-----VPPSKPTISVPSS-VTIGNRAVLTCSEHDGSPPSEYSWFKDGIS 145 (212)
T ss_dssp -CEEEEEEEEET-TSSSEEEEEE---EEEEE-----BCCCCCEEECCSE-EETTSCEEEEEECSCCBSCCEEEEEETTEE
T ss_pred -CeEEEEEEEcc-CCCcccEEEE---EEEEE-----cCCCCcccCCccc-cCCCCeEEEEEEcccCcCCCEEEEEeCCcc
Confidence 99999999987 55 333344 66676 5565555444455 899999999999 7889999999999998
Q ss_pred ccccCCc---------eE--EecceEEEeccCCCCCeEEEEEEEcCCCCc--eeEEEEEEec
Q psy14542 262 PVEESDR---------IQ--RIGSSLSISHVEESDSGVWNCVANNSEGQD--KMQLFIQYAH 310 (371)
Q Consensus 262 ~~~~~~~---------~~--~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~--~~~~~l~v~~ 310 (371)
.+..... +. ...+.|.|.++..+|+|.|+|.|.|..|.. +..+.|.|.+
T Consensus 146 ~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~l~V~~ 207 (212)
T 1f97_A 146 MLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAVE 207 (212)
T ss_dssp SBC-----CBSCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEECSSSCCEECCCEEEEEES
T ss_pred cccccccccccccCceeEecCCCceEEEEecChhhCcEEEEEEccccCCccccceEEEEEEE
Confidence 7765432 22 235689999999999999999999999988 5667776654
No 139
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A
Probab=99.89 E-value=5.2e-22 Score=156.95 Aligned_cols=168 Identities=20% Similarity=0.252 Sum_probs=118.3
Q ss_pred ceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeC------CEEEeeCCeeEEEEccCCcCCCeEEEEEEEcCCCC
Q psy14542 11 LSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKD------GLVLRRNSDEVLVLDRVQREDAGMYQCHVSADDDS 84 (371)
Q Consensus 11 ~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~------~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 84 (371)
+++.+.|...+.+.+|++++|.|.+ .+.|.+.+.|+++ +..........|.|.+++.+|+|.|+|.+.|..+.
T Consensus 1 ~~v~i~p~~~~~~~~G~~v~L~C~~-~g~P~p~i~W~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~ 79 (202)
T 1vca_A 1 FKIETTPESRYLAQIGDSVSLTCST-TGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRK 79 (202)
T ss_dssp CEEEEESSSEEEEETTSCEEEEEEE-ESCSSCEEEEEETTCCCCSSEEEEETTEEEEEESSCCGGGCSEEEEEEEETTEE
T ss_pred CeEEECCCCcEEEcCCCcEEEEEee-cCCCCCeEEEECCCCCCccceEEEcCCccEEEECcCCHHHCEEEEEEEEECCce
Confidence 3567778774555699999999965 5678888999983 33333335678999999999999999999998877
Q ss_pred eEEEEEEEEecceeeEecCCceeeecCCcEEEEEEecCCCCC--ceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEE
Q psy14542 85 AQMSAQVILGGELVEIASSNQVVVDVGHRIELHCRVSPKRLS--SAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCH 162 (371)
Q Consensus 85 ~~~~~~l~v~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~--~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~ 162 (371)
....+.|.|...+..+...+...+.+|+.++|.|.+.+.++. +.+.|++++..+..... . .+.
T Consensus 80 ~~~~~~l~V~~~p~~~~~~~~~~~~~G~~~~L~C~~~~~~p~~~~~i~W~k~~~~l~~~~~--------~-~~~------ 144 (202)
T 1vca_A 80 LEKGIQVEIYSFPKDPEIHLSGPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEF--------L-EDA------ 144 (202)
T ss_dssp EEEEEEEEEEBCCSCCEEEESSCEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEEC--------C-SCC------
T ss_pred EeeEEEEEEEeCCCCCEeCCceEEcCCCCEEEEEEECCcCCCCCeEEEEEeCCeECccccc--------c-ccc------
Confidence 778888998743333332233446899999999999876432 47999999987754310 0 000
Q ss_pred EeCCceeEeccceEEEEEeecCCccceeEEEeecc
Q psy14542 163 IEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNK 197 (371)
Q Consensus 163 ~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~ 197 (371)
...........|.|.....+| .|.|+|.|.|.
T Consensus 145 --~~~~~~~~~~~l~i~~~~~d~-~g~ytC~A~n~ 176 (202)
T 1vca_A 145 --DRKSLETKSLEVTFTPVIEDI-GKVLVCRAKLH 176 (202)
T ss_dssp --SSCCCEEEEEEEEECCCGGGT-TCEEEEEEEEC
T ss_pred --CcCcceEEEEEEEEEeeeccC-CCeEEEEEEcc
Confidence 000001112456777777777 99999999997
No 140
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Probab=99.89 E-value=2.3e-22 Score=155.51 Aligned_cols=165 Identities=15% Similarity=0.213 Sum_probs=123.7
Q ss_pred eeeEecCCce-eeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccce
Q psy14542 97 LVEIASSNQV-VVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGE 175 (371)
Q Consensus 97 ~~~~~~~~~~-~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~ 175 (371)
.|.+...+.. .+.+|+.++|.|.+.+.+.+..+.|++++..+... +..
T Consensus 7 ~p~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~~~~W~~~~~~~~~~-------------------------------~~~ 55 (175)
T 1fnl_A 7 KAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQ-------------------------------ASS 55 (175)
T ss_dssp CCEEEEESCCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEESS-------------------------------CSE
T ss_pred CCEEEEcCCceeeeCCCcEEEEeeCCCCCCCcceEEEECCEEccCC-------------------------------ceE
Confidence 4455555554 56899999999999888763458999999877542 167
Q ss_pred EEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecCCCC-ce
Q psy14542 176 LIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLP-TI 254 (371)
Q Consensus 176 l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~-~v 254 (371)
|.|.+++.+| +|.|+|.+.+. .+ .... .+.|. .++.... ..... +..|+.+.|.|.+.+.+++ .+
T Consensus 56 L~i~~~~~~d-~G~Y~C~~~n~-~~--s~~~---~l~V~-----~~~~~~~-~~~~~-~~~g~~~~l~C~~~~~~~~~~~ 121 (175)
T 1fnl_A 56 YFIDAATVND-SGEYRCQTNLS-TL--SDPV---QLEVH-----IGWLLLQ-APRWV-FKEEDPIHLRCHSWKNTALHKV 121 (175)
T ss_dssp EEESSCCGGG-CEEEEEECSSS-CC--CCCE---EEEEE-----CSSEEEE-CSCSE-EETTCCEEEEEEECTTCCCEEE
T ss_pred EEEeCCCccc-CEEEEEEeeCC-cc--cccE---EEEEe-----CCCceee-CCCce-ecCCCCEEEEEEcCCCCCceEE
Confidence 9999999999 99999999875 33 2233 56666 2333222 22333 8899999999999887664 99
Q ss_pred EEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCCC-ceeEEEEEEec
Q psy14542 255 KWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQ-DKMQLFIQYAH 310 (371)
Q Consensus 255 ~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~-~~~~~~l~v~~ 310 (371)
.|+++|..+... ..++.|.|.++..+|+|.|+|.|.|..+. .+..+.|.|.+
T Consensus 122 ~W~k~g~~~~~~----~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~ 174 (175)
T 1fnl_A 122 TYLQNGKDRKYF----HHNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNITITQ 174 (175)
T ss_dssp EEEETTEEEEEE----EECCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred EEEECCeEccCC----CCCCEEEEcccChhhCeEEEEEEEcCCCCccCccEEEEEeC
Confidence 999999877432 34678999999999999999999997654 56667777764
No 141
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A
Probab=99.89 E-value=2.5e-22 Score=154.59 Aligned_cols=158 Identities=14% Similarity=0.230 Sum_probs=122.8
Q ss_pred cccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeCCeeEEEEccCCcCCCeEEEEEEEcCCCCeEE
Q psy14542 8 KSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHVSADDDSAQM 87 (371)
Q Consensus 8 ~~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~ 87 (371)
.++|.+.+.|.. ..+.+|+++.|.|.+....+.+.+.|++++..+.. ....+.+.+++.+|+|.|+|.+.+... ..
T Consensus 2 ~p~p~i~~~p~~-~~v~~G~~v~l~C~~~~~p~~~~~~W~~~g~~~~~-~~~~~~~~~~~~~d~G~Y~C~~~~~~~--s~ 77 (170)
T 3ry4_A 2 PPKAVLKLEPPW-INVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPT-HTQPSYRFKANNNDSGEYTCQTGQTSL--SD 77 (170)
T ss_dssp CCBCEEEEESCC-SEEETTCEEEEEEESCCCSSSSCEEEEETTEECTT-CCSSEEEEECCGGGCEEEEEEETTSBC--CC
T ss_pred CCCCEEEeCCCC-eEEECCCcEEEEEEecCCCCcceEEEEECCeEccc-CccceEEEecccccCeEEEEEEeCCCc--eE
Confidence 367889999987 78999999999996554433678999999998875 455678889999999999999986543 34
Q ss_pred EEEEEEecceeeEecCCceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCc
Q psy14542 88 SAQVILGGELVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGK 167 (371)
Q Consensus 88 ~~~l~v~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~ 167 (371)
.+.|.|. .++.+...+...+.+|+.+.|.|.+.+.++.+.+.|++++..+....
T Consensus 78 ~~~l~v~-~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~------------------------- 131 (170)
T 3ry4_A 78 PVHLTVL-FEWLVLQTPHLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKFSH------------------------- 131 (170)
T ss_dssp CEEEEEE-CCSEEEECSCSEECTTCCEEEEEEEGGGCCEEEEEEEETTEEEEEES-------------------------
T ss_pred eEEEEEE-CCceEecCCCceeecCCeEEEEEECCCCCCCceEEEEECCeEccccC-------------------------
Confidence 5677777 34444555555668999999999995443338999999998765321
Q ss_pred eeEeccceEEEEEeecCCccceeEEEeeccccce
Q psy14542 168 YHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGA 201 (371)
Q Consensus 168 ~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~ 201 (371)
.+..|.|.++..+| .|.|+|.+.|. .|.
T Consensus 132 ----~~~~L~i~~v~~~d-~G~Y~C~a~n~-~g~ 159 (170)
T 3ry4_A 132 ----LDPTFSIPQANHSH-SGDYHCTGNIG-YTL 159 (170)
T ss_dssp ----SCCEEEESSCCGGG-CEEEEEEEEET-TEE
T ss_pred ----CCCeEEEEeccccC-CEEEEEEEEeC-cCc
Confidence 11578999999999 99999999998 553
No 142
>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}
Probab=99.89 E-value=3.3e-21 Score=174.27 Aligned_cols=260 Identities=13% Similarity=0.186 Sum_probs=159.4
Q ss_pred ccCcEEEEEEecCCCCCC-eeEEEeCCEEEe--------e-C----CeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEE-
Q psy14542 25 VGHRIELHCRVSPKRLSS-AKAWLKDGLVLR--------R-N----SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSA- 89 (371)
Q Consensus 25 ~G~~v~l~C~~~~~~~~~-~~~W~~~~~~~~--------~-~----~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~- 89 (371)
.|+.++|.|.+....|.+ .+.|++++.... . . ....|.|.+...+ .|.|+|.+.+..+.....+
T Consensus 149 ~~~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~-~g~ytC~v~n~~~~~~~~~~ 227 (512)
T 1zvo_C 149 DNSPVVLACLITGYHPTSVTVTWYMGTQSQPQRTFPEIQRRDSYYMTSSQLSTPLQQWR-QGEYKCVVQHTASKSKKEIF 227 (512)
T ss_pred CCCeEEEEEEEEeeecCceEEEEEcCcccCceEecCceecCCCCEEEEEEEEEcHHHcC-CceEEEEEEeCCCCceEEEe
Confidence 568999999766555764 899999754311 0 0 1235888887777 8999999999877654433
Q ss_pred ----------EEEEec---------------------------------------------------ceeeEec-CCc-e
Q psy14542 90 ----------QVILGG---------------------------------------------------ELVEIAS-SNQ-V 106 (371)
Q Consensus 90 ----------~l~v~~---------------------------------------------------~~~~~~~-~~~-~ 106 (371)
.|.+.. .+|.+.. .+. .
T Consensus 228 ~~~~~~~~~~~v~l~~pp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~p~v~~~~p~~~ 307 (512)
T 1zvo_C 228 RWPESPKAQASSVPTAQPQAEGSLAKATTAPATTRNTGRGGEEKKKEKEKEEQEERETKTPECPSHTQPLGVYLLTPAVQ 307 (512)
T ss_pred cCCCCCCcCCEEEEeCCCchhccccccccCchhhccCcccccceeccCCcccccccCcccccCCCCCCCCEEEEECCChH
Confidence 233320 0122211 111 1
Q ss_pred eeecCCcEEEEEEecCCCC-CceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCC
Q psy14542 107 VVDVGHRIELHCRVSPKRL-SSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESD 185 (371)
Q Consensus 107 ~~~~g~~v~l~C~~~~~~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d 185 (371)
.+..|+.++|.|.+.+..+ ...++|++++..+..... .........|.| .. .+.|.|.....+|
T Consensus 308 ~~~~g~~~~L~C~v~g~~P~~~~i~W~k~g~~~~~~~~----~~~~~~~~~gt~---------~~--~s~L~i~~~~~~d 372 (512)
T 1zvo_C 308 DLWLRDKATFTCFVVGSDLKDAHLTWEVAGKVPTGGVE----EGLLERHSNGSQ---------SQ--HSRLTLPRSLWNA 372 (512)
T ss_pred HhccCCceEEEEEEeceECCCeEEEEEECCEeccCcee----ccceecCCCCeE---------EE--EEEEEEchHHhcC
Confidence 2357999999999988633 359999999987552110 001111122322 22 2679999999999
Q ss_pred ccceeEEEeeccccceeeeeeccceeeeecch-hccccceeeeeeeeeeeecCCeEE-EEEEeecCCCC--ceEEEeCCc
Q psy14542 186 RYRSYQCRGVNKLTGASLLSVNRGRLSLTENK-RLLSAAKMFEKHRILNVKKDESVI-LPCSAQGNPLP--TIKWYKQDS 261 (371)
Q Consensus 186 ~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~-~~~~p~~~~~~~~~~~~~~g~~~~-l~C~~~~~p~~--~v~W~~~~~ 261 (371)
.|.|+|.|.|. .+... .. .+...... ...+|.+...+.. . .|+.+. |.|.+.|++++ .+.|+++|.
T Consensus 373 -~g~y~C~a~n~-~~~~~-~~---~~~~~~~~~~~~~p~v~~~~~~---~-~~~~~~~L~C~~~g~~P~~i~v~W~k~g~ 442 (512)
T 1zvo_C 373 -GTSVTCTLNHP-SLPPQ-RL---MALREPAAQAPVKLSLNLLASS---D-PPEAASWLLCEVSGFSPPNILLMWLEDQR 442 (512)
T ss_pred -CCeEEEEEEeC-CCCCC-ce---eEEeecCCCCCCCCEEEEEccC---c-CCCCceEEEEEEeeeCCCCcEEEEEECCe
Confidence 99999999987 44322 21 22211000 0134554433221 1 688899 99999985443 589999998
Q ss_pred ccccCCce----E-Eec-------ceEEEeccCCCCCeEEEEEEEcCCCCc--eeEEEEEEec
Q psy14542 262 PVEESDRI----Q-RIG-------SSLSISHVEESDSGVWNCVANNSEGQD--KMQLFIQYAH 310 (371)
Q Consensus 262 ~~~~~~~~----~-~~~-------~~l~i~~~~~~d~G~Y~C~a~n~~g~~--~~~~~l~v~~ 310 (371)
.+...... . ..+ +.|.|.....+|.|.|+|+|.|..... .....|.|..
T Consensus 443 ~~~~~~~~~~~~~~~~dg~~~~~~s~L~v~~~~~~~~g~YtC~v~h~~l~~~~~~~~~~~v~~ 505 (512)
T 1zvo_C 443 EVNTSGFAPARPPPQPGSTTFWAWSVLRVPAPPSPQPATYTCVVSHEDSRTLLNASRSLEVSY 505 (512)
T ss_pred ECcCccccccceeECCCCCEEEEEEEEEECchhcCCCCeEEEEEEecCCCCceEEEEEEEecc
Confidence 87654211 1 112 246666677778999999999987653 4444455543
No 143
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*
Probab=99.89 E-value=7.1e-23 Score=158.57 Aligned_cols=168 Identities=15% Similarity=0.209 Sum_probs=124.6
Q ss_pred eeeEecCCce-eeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccce
Q psy14542 97 LVEIASSNQV-VVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGE 175 (371)
Q Consensus 97 ~~~~~~~~~~-~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~ 175 (371)
+|.+...+.. .+.+|+.++|.|.+.+.+.+..+.|++++..+... +..
T Consensus 4 ~P~i~~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~-------------------------------~~~ 52 (176)
T 1f2q_A 4 KPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEET-------------------------------NSS 52 (176)
T ss_dssp CCCCEEESSCSEEETTCCEEEECCTTCC----CCEEEETTEECSCC-------------------------------SSE
T ss_pred CCEEEcCCCCcceecCCcEEEEEeCCCCCCcceEEEEECCeECCCC-------------------------------ceE
Confidence 4444444444 56899999999999887764579999999876532 168
Q ss_pred EEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEee-cCCCCce
Q psy14542 176 LIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQ-GNPLPTI 254 (371)
Q Consensus 176 l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~-~~p~~~v 254 (371)
|.|.+++.+| .|.|+|.+.+. .+. ... .+.|. .++.... ..... +..|+.+.|.|.+. +.|.+.+
T Consensus 53 L~i~~v~~~d-~G~Y~C~~~~~-~~s--~~~---~l~V~-----~~~~~~~-~~~~~-~~~g~~~~l~C~~~~~~p~~~~ 118 (176)
T 1f2q_A 53 LNIVNAKFED-SGEYKCQHQQV-NES--EPV---YLEVF-----SDWLLLQ-ASAEV-VMEGQPLFLRCHGWRNWDVYKV 118 (176)
T ss_dssp EEECSCCGGG-CEEEEEECTTS-SCC--CCE---EEEEE-----CSSEEEE-ESCSE-EETTSCEEEEEEEGGGCCEEEE
T ss_pred EEEeccceec-CEEEEEEcCCc-ccc--ccE---EEEEe-----Ccceeec-CCcce-eeCCCCEEEEEEecCCCCceEE
Confidence 9999999999 99999999876 332 223 55665 3333322 22234 88999999999995 5677899
Q ss_pred EEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCC-CceeEEEEEEecCcc
Q psy14542 255 KWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEG-QDKMQLFIQYAHGKY 313 (371)
Q Consensus 255 ~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g-~~~~~~~l~v~~~p~ 313 (371)
.|+++|..+.... .++.|.|.++..+|+|.|+|.|.|..+ ..+..+.|.|..+|.
T Consensus 119 ~W~~~g~~~~~~~----~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~p~ 174 (176)
T 1f2q_A 119 IYYKDGEALKYWY----ENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNITVIKAPR 174 (176)
T ss_dssp EEEETTEECCSCC----CSSEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEECSCC
T ss_pred EEEECCEEEeeec----CCCeEEECCCCcccCEEEEEEEEeCCcceEecCEEEEEecCCC
Confidence 9999998775332 357899999999999999999999644 456678899988876
No 144
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*
Probab=99.89 E-value=1.4e-22 Score=162.67 Aligned_cols=185 Identities=26% Similarity=0.419 Sum_probs=132.2
Q ss_pred ceeeEecCCce-eeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCee--EEEEcccCcCCCeeEEEEEeCCceeEec
Q psy14542 96 ELVEIASSNQV-VVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDE--VLVLDRVQREDAGMYQCHIEDGKYHMLS 172 (371)
Q Consensus 96 ~~~~~~~~~~~-~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~--~~~~~~~~~~~~g~y~~~~~~~~~~~~~ 172 (371)
.+|.+...+.. .+.+|+.+.|.|.+.+.+. +.+.|++++..+...... .+... ++...
T Consensus 8 ~~P~i~~~p~~~~v~~G~~v~L~C~~~g~p~-~~v~W~~~g~~~~~~~~~~~~~~~~---------------~~~~~--- 68 (217)
T 2vr9_A 8 QSPRIIEHPTDLVVKKNEPATLNCKVEGKPE-PTIEWFKDGEPVSTNEKKSHRVQFK---------------DGALF--- 68 (217)
T ss_dssp CCCEEEECCCCEEECTTSCEEECCEEECSSC-CEEEEEETTEECCCSSSSSSEEECT---------------TSCEE---
T ss_pred CCCEEecCCCceEEeCCCcEEEEEEcCCCCC-CeEEEEECCcCccCCCccceeEEec---------------CCceE---
Confidence 55666665544 4489999999999988776 899999999887654211 00000 00000
Q ss_pred cceEEEEEeecCCccceeEEEeecccccee-eeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEe-ecCC
Q psy14542 173 SGELIIHQVDESDRYRSYQCRGVNKLTGAS-LLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSA-QGNP 250 (371)
Q Consensus 173 ~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~-~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~-~~~p 250 (371)
..+.|.+++..| +|.|+|.+.+. .+.. .... .+.|.. .+|.+...+.... +..|+.+.|.|.+ .+.|
T Consensus 69 -~~l~i~~v~~~d-~G~Y~C~~~n~-~g~~~~~~~---~l~v~~----~~~~~~~~~~~~~-~~~g~~v~l~C~~~~g~p 137 (217)
T 2vr9_A 69 -FYRTMQGKKEQD-GGEYWCVAKNR-VGQAVSRHA---SLQIAV----LRDDFRVEPKDTR-VAKGETALLECGPPKGIP 137 (217)
T ss_dssp -ESSCCBSSSCBC-CEEEEEEEEET-TEEEECCCE---EEEECE----ECCSCSBCCCCEE-ECTTSCEEECCBCCCEES
T ss_pred -EEEEeccCCccc-CceEEEEEecC-CCccccccc---eEEEEE----eCCCcEECCCccE-EcCCCeEEEEEECCCCCC
Confidence 123678889999 99999999987 5543 2233 555552 2344444455555 8899999999998 8899
Q ss_pred CCceEEEeCCccccc--------CCceE-EecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEec
Q psy14542 251 LPTIKWYKQDSPVEE--------SDRIQ-RIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAH 310 (371)
Q Consensus 251 ~~~v~W~~~~~~~~~--------~~~~~-~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~ 310 (371)
.+.+.|++++..+.. ..++. ..++.|.|.++..+|+|.|+|.|.|..|....+..+.+..
T Consensus 138 ~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~~lv~~ 206 (217)
T 2vr9_A 138 EPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQ 206 (217)
T ss_dssp CCEEEEEETTEEECCCCCC---CCCSEEEETTTEEEESSCCSTTCEEEEEEEEETTEEEECCCEEEEEC
T ss_pred CCeEEEEECCcCCCcccccccccCCcEEecCCCcEEEeeCCHHHCeEEEEEEEcccceeccccEEEEEE
Confidence 999999999988763 23333 3456899999999999999999999999877665555543
No 145
>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*
Probab=99.89 E-value=8.7e-23 Score=163.31 Aligned_cols=187 Identities=13% Similarity=0.154 Sum_probs=126.2
Q ss_pred ceeeEecCCceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccc-
Q psy14542 96 ELVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSG- 174 (371)
Q Consensus 96 ~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~- 174 (371)
.+|.+...+...+.+|++++|.|.+.+ +. +.+.|+|++..+...... ........
T Consensus 8 ~~P~i~~~p~~~v~~G~~vtL~C~~~~-~~-~~~~W~k~g~~~~~~~~~----------------------~~~~~~~~~ 63 (218)
T 1uct_A 8 PMPFISAKSSPVIPLDGSVKIQCQAIR-EA-YLTQLMIIKNSTYREIGR----------------------RLKFWNETD 63 (218)
T ss_dssp CCCCEEESSCSEEETTCCEEEEECCCT-TC-SEEEEEEEETTEEEECSE----------------------ECC----CC
T ss_pred CCCEEEecCCCccCCCCCEEEEEEcCC-CC-CEEEEEECCCcccccccc----------------------cCCCCccee
Confidence 355666666656689999999999976 44 799999987655422100 00001124
Q ss_pred -eEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecCCCCc
Q psy14542 175 -ELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPT 253 (371)
Q Consensus 175 -~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~ 253 (371)
.|.|.+++.+| +|.|+|.+.+. .+....+. ...|.|.. ...+|.+...+ ... +.+|+.++|.|...+.+.+.
T Consensus 64 ~~L~I~~v~~~D-~G~Y~C~a~n~-~~~~~~s~-~~~l~V~~--~~~~P~i~~~p-~~~-v~~G~~v~L~C~~~~~~~~~ 136 (218)
T 1uct_A 64 PEFVIDHMDANK-AGRYQCQYRIG-HYRFRYSD-TLELVVTG--LYGKPFLSADR-GLV-LMPGENISLTCSSAHIPFDR 136 (218)
T ss_dssp CEEEECSCCGGG-CEEEEEEEEET-TTEEEECC-CEEEEEEC--SSCCCEEEESS-CSE-ECTTCCCEEEEECSSSCCSE
T ss_pred eEEEEccccccc-CEEEEEEEEcC-CCceeecC-CEEEEEcC--cccCCEEEeCC-CCc-cCCCCCEEEEEeCCCCCCCE
Confidence 79999999999 99999999987 44333222 12455542 11345554444 334 89999999999766777889
Q ss_pred eEEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCC-----CceeEEEEEEecCcc
Q psy14542 254 IKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEG-----QDKMQLFIQYAHGKY 313 (371)
Q Consensus 254 v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g-----~~~~~~~l~v~~~p~ 313 (371)
+.|+|+|..+.........++.|.|.++..+|+|.|+|.|.|... ..+..+.|.|...+.
T Consensus 137 ~~W~k~g~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~g~~~ 201 (218)
T 1uct_A 137 FSLAKEGELSLPQHQSGEHPANFSLGPVDLNVSGIYRCYGWYNRSPYLWSFPSNALELVVTDSIH 201 (218)
T ss_dssp EEEEETTCSSCCSEEECSSSEEEECCSCCGGGCEEEEEEEECTTSTTEECCCCCCEEEEEC----
T ss_pred EEEEECCCcccccccCCCccCEEEEccCCcccCEEEEEEEEcCCCCCcCCCCCCcEEEEEecCCC
Confidence 999999987764321123457899999999999999999998642 345667788876544
No 146
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}
Probab=99.89 E-value=7.2e-23 Score=172.05 Aligned_cols=208 Identities=16% Similarity=0.192 Sum_probs=143.6
Q ss_pred ceeeEecCCce-eeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccc
Q psy14542 96 ELVEIASSNQV-VVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSG 174 (371)
Q Consensus 96 ~~~~~~~~~~~-~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~ 174 (371)
.+|.+...+.. .+.+|++++|.|.+.+. +.|++++..... + .. . ...+
T Consensus 3 ~~P~i~~~~~~~~v~~G~~v~L~C~~~~~-----v~W~~~~~~~~~-----~--~~--------------~-----~~~~ 51 (292)
T 4dkd_C 3 SIPVIEPSVPELVVKPGATVTLRCVGNGS-----VEWDGPPSPHWT-----L--YS--------------D-----GSSS 51 (292)
T ss_dssp -CCEEESCCSSCEECTTCCEEEEEECSSC-----CCBCCCCCSSCE-----E--CC--------------B-----TTEE
T ss_pred CCceecCCCCeEEEcCCCcEEEEEcCCCc-----eEEccCCCCceE-----E--ec--------------c-----CceE
Confidence 34556555543 45899999999998773 889965431100 0 00 0 0125
Q ss_pred eEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccc-eeeeeeeeeeeecCCeEEEEEEeecCCC--
Q psy14542 175 ELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAA-KMFEKHRILNVKKDESVILPCSAQGNPL-- 251 (371)
Q Consensus 175 ~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~-~~~~~~~~~~~~~g~~~~l~C~~~~~p~-- 251 (371)
.|.|.+++..| +|.|+|.+.+. .+...... .|.|. .+|. +...+.... +..|+.+.|.|.+.+ |.
T Consensus 52 ~L~i~~~~~~d-~G~Y~C~~~n~-~~~~~~~~---~l~V~-----~~~~~~~~~~~~~~-v~~g~~v~l~C~~~~-~~~~ 119 (292)
T 4dkd_C 52 ILSTNNATFQN-TGTYRCTEPGD-PLGGSAAI---HLYVK-----DPARPWNVLAQEVV-VFEDQDALLPCLLTD-PVLE 119 (292)
T ss_dssp EEEESSCCGGG-CSCEEECCCC-----CCEEE---CCEEC-----CSSCCEEESCSEEE-EETTSCEECCEEESS-GGGG
T ss_pred EEEEccccccc-CEEEEEEEccC-CCCcceEE---EEEEc-----CccccccccCCeEE-EcCCCcEEEeeeCCC-CCcc
Confidence 89999999999 99999999987 55555555 67777 3333 233344455 899999999999987 44
Q ss_pred CceEEEeC-CcccccCCceE-EecceEEEeccCCCCCeEEEEEEEcCCCCc-eeEEEEEEec----CcccccccceEEEE
Q psy14542 252 PTIKWYKQ-DSPVEESDRIQ-RIGSSLSISHVEESDSGVWNCVANNSEGQD-KMQLFIQYAH----GKYHMLSSGELIIH 324 (371)
Q Consensus 252 ~~v~W~~~-~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~v~~----~p~~~~~~~~~~~~ 324 (371)
+.+.|+++ +..+....++. ..++.|.|.++..+|+|.|+|.|.|..+.. +..+.|.|.. +|. +.
T Consensus 120 ~~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~p~---------i~ 190 (292)
T 4dkd_C 120 AGVSLVRVRGRPLMRHTNYSFSPWHGFTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQKVIPGPPA---------LT 190 (292)
T ss_dssp SSEEEEEGGGCCCCSSCCEECCSSSCCEETTCCGGGCSEEEEEECSTTSCEECCCEEEEEECCCCSSCE---------EE
T ss_pred eeEEEEecCCCccccCCcccccCCceEEECCCCHHHCeEEEEEEEeCCCceeEEEEEEEEeCCCCCCCe---------EE
Confidence 78999997 55555554444 234569999999999999999999988865 4478888886 555 43
Q ss_pred eeeeccccccccccccccceeeeeecCCeEEEeeeeecCCCC-ccccC
Q psy14542 325 QVDEKNKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLP-TIKYR 371 (371)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p-~i~W~ 371 (371)
..|.. ..+.+|+.+.|.|.+.|.|++ .+.|+
T Consensus 191 --~~~~~--------------~~~~~g~~v~l~C~~~~~~~~~~~~w~ 222 (292)
T 4dkd_C 191 --LVPAE--------------LVRIRGEAAQIVCSASSVDVNFDVFLQ 222 (292)
T ss_dssp --EESSC--------------BCCCSSSCEEEEEEEEESSSCCEEECC
T ss_pred --ccCCc--------------eeEecCCCEEEEEEecCCCCceEEEEe
Confidence 22222 145699999999999997764 67774
No 147
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*
Probab=99.89 E-value=3.1e-22 Score=159.93 Aligned_cols=175 Identities=14% Similarity=0.139 Sum_probs=120.6
Q ss_pred eeeecC--CcEEEEEEecCCCCCceEEEeeC---CEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEE
Q psy14542 106 VVVDVG--HRIELHCRVSPKRLSSAKAWLKD---GLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQ 180 (371)
Q Consensus 106 ~~~~~g--~~v~l~C~~~~~~~~~~v~W~~~---~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~ 180 (371)
..+.+| ++++|.|.+.+ +. +.+.|+++ +..+.... ++.......|.|.+
T Consensus 17 v~v~eG~~~~v~L~C~~~~-p~-~~v~w~~~~~~g~~~~~~~------------------------~~~~~~~~~l~I~~ 70 (213)
T 2x1w_L 17 VYITENKNKTVVIPCLGSI-SN-LNVSLCARYPEKRFVPDGN------------------------RISWDSKKGFTIPS 70 (213)
T ss_dssp EEECCSTTCEEEECCCBSS-TT-CCEEEEEETTTEEECCCSS------------------------SCEEETTTEEEEEG
T ss_pred EEEecCCCccEEEeeccCC-CC-cEEEEEhhcCCCccccCCC------------------------cccccCCccEEEcc
Confidence 334789 99999999976 55 79999885 44443321 22223336799999
Q ss_pred eecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecCCC--CceEEEe
Q psy14542 181 VDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPL--PTIKWYK 258 (371)
Q Consensus 181 ~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~--~~v~W~~ 258 (371)
++.+| +|.|+|.+.+. .+.. .+. ...+.|... .+|.+...+.....+..|+.++|.|.+.|.|. +.+.|++
T Consensus 71 v~~~D-~G~Y~C~a~n~-~~~~-~s~-~~~l~v~~~---~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~i~W~~ 143 (213)
T 2x1w_L 71 YMISY-AGMVFCEAKIN-DESY-QSI-MYIVVVVGY---RIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEY 143 (213)
T ss_dssp GGTTT-CSEEEEEEC-----CE-ECC-CEEEEECBC---CEEEEEEESCSCEEEETTCCEEEEEEEEECTTBCCEEEEEC
T ss_pred CChhc-CceEEEEEEEC-CeeE-EEE-EEEEEEeCC---cccceEEcCCCCeEEcCCCCEEEEEEEECCCCCceEEEEEe
Confidence 99999 99999999885 3322 221 114444321 34445444444312899999999999998654 5799999
Q ss_pred CCcccccCCc-e-----------EEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEecCcc
Q psy14542 259 QDSPVEESDR-I-----------QRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKY 313 (371)
Q Consensus 259 ~~~~~~~~~~-~-----------~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~ 313 (371)
++..+..... . ....++|.|.++..+|+|.|+|.|.|..|.....+.|.|.++|.
T Consensus 144 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~p~ 210 (213)
T 2x1w_L 144 PSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEDPI 210 (213)
T ss_dssp SCSSCCSEEEEEEEECCCSSCSCEEEEEEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEC---
T ss_pred cCCccceEEEeccccccccCccceeeeEEEEECCCCcccCEEEEEEEecCCCcEEEEEEEEEecccc
Confidence 9887543211 0 12234699999999999999999999999999999999998887
No 148
>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.89 E-value=2.1e-22 Score=157.64 Aligned_cols=181 Identities=11% Similarity=0.082 Sum_probs=121.9
Q ss_pred eeeEecCCceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceE
Q psy14542 97 LVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGEL 176 (371)
Q Consensus 97 ~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l 176 (371)
.|.+...+...+.+|++++|.|.+.+. . ..+.|+|++..+..... . ......+..|
T Consensus 4 ~P~i~~~p~~~v~~G~~v~L~C~~~~~-~-~~~~w~k~g~~~~~~~~------~----------------~~~~~~~~~L 59 (188)
T 1oll_A 4 KPFIWAEPHFMVPKEKQVTICCQGNYG-A-VEYQLHFEGSLFAVDRP------K----------------PPERINKVKF 59 (188)
T ss_dssp CCEEEEESCSEEETTCCEEEEEECCTT-C-CEEEEEETTEEEEEECC------S----------------SCTTCCEEEE
T ss_pred CCEEEeecCCcCCCCCCEEEEEecCCC-C-CEEEEEECCCccccccc------c----------------cCCCcceeEE
Confidence 455555555566899999999998754 3 68999999987653110 0 0001122679
Q ss_pred EEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecCCCCceEE
Q psy14542 177 IIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKW 256 (371)
Q Consensus 177 ~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W 256 (371)
.|.+++.+| +|.|+|.+.+. .+....+. ...|.|... ..+|.+...+ ... +.+|+.++|.|.+.+ +.+.+.|
T Consensus 60 ~I~~v~~~D-~G~Y~C~~~~~-~~~~~~s~-~~~l~V~~~--~~~p~i~~~p-~~~-v~~G~~v~L~C~~~~-~~~~~~w 131 (188)
T 1oll_A 60 YIPDMNSRM-AGQYSCIYRVG-ELWSEPSN-LLDLVVTEM--YDTPTLSVHP-GPE-VISGEKVTFYCRLDT-ATSMFLL 131 (188)
T ss_dssp EESSCCGGG-CEEEEEEEEET-TEECCCCC-CEEEEEESC--SCCCEEEEES-CSE-EETTCEEEEEEECSS-SCSEEEE
T ss_pred EeCcCCccc-CeEEEEEecCC-CCCCCCCC-ceEEEeccc--CCCCeEEECC-CCc-cccCCEEEEEEEcCC-CCCEEEE
Confidence 999999999 99999999875 33222221 114555421 1355555444 334 899999999999875 4568999
Q ss_pred EeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCC---CceeEEEEEEe
Q psy14542 257 YKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEG---QDKMQLFIQYA 309 (371)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g---~~~~~~~l~v~ 309 (371)
+++|..+.........++.|.|.++..+|+|.|+|.|.|... ..+..+.|.|.
T Consensus 132 ~k~g~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~s~~S~~~~l~V~ 187 (188)
T 1oll_A 132 LKEGRSSHVQRGYGKVQAEFPLGPVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLVT 187 (188)
T ss_dssp EEESSSCEEEEEECSSEEEEEEEECCGGGCEEEEEECEEETTEECCCCCCEEEEEE
T ss_pred EECCccccccccCCCceeEEEECCCCcCCCcEEEEEEEcCCCcCCCCCCcEEEEec
Confidence 999987654211112356899999999999999999998752 23455666654
No 149
>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}
Probab=99.89 E-value=1.5e-22 Score=159.59 Aligned_cols=181 Identities=15% Similarity=0.150 Sum_probs=124.8
Q ss_pred eeeEecCCceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceE
Q psy14542 97 LVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGEL 176 (371)
Q Consensus 97 ~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l 176 (371)
+|.+...+...+.+|++++|.|.+.+ +. +.+.|+|++..+...... .........|
T Consensus 5 ~P~i~~~p~~~v~~G~~v~L~C~~~~-~~-~~~~w~k~g~~~~~~~~~----------------------~~~~~~~~~L 60 (196)
T 3p2t_A 5 KPTLWAEPGSVISWGNSVTIWCQGTL-EA-REYRLDKEESPAPWDRQN----------------------PLEPKNKARF 60 (196)
T ss_dssp CCEEEEESCSEEETTCCEEEEEECCT-TC-CEEEEEETTSCSCSEEEC----------------------CCSSSSEEEE
T ss_pred CCEEEccCCCcCCCCCcEEEEeeCCC-CC-CEEEEEECCCCCcccccc----------------------cccCCceEEE
Confidence 45566556666689999999999988 44 799999998765432100 0000122679
Q ss_pred EEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecCCCCceEE
Q psy14542 177 IIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKW 256 (371)
Q Consensus 177 ~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W 256 (371)
.|.+++.+| +|.|+|.+.|. .+....+. ...|.|.. ...+|.+...+.. . +..|+.++|.|.+.+ +.+.+.|
T Consensus 61 ~i~~v~~~D-~G~Y~C~a~n~-~g~~~~s~-~~~l~V~~--~~~~p~~~~~~~~-~-v~~G~~v~L~C~~~~-~~~~~~w 132 (196)
T 3p2t_A 61 SIPSMTEDY-AGRYRCYYRSP-VGWSQPSD-PLELVMTG--AYSKPTLSALPSP-L-VTSGKSVTLLCQSRS-PMDTFLL 132 (196)
T ss_dssp EESSCCGGG-CEEEEEEEEET-TEEBCCCC-CEEEEEEC--SSCCCEEEEESCS-E-ECTTCCEEEEEEEEE-EEEEEEE
T ss_pred EeccCCccc-CceEEEEEeCC-CcccCCCc-cEEEEecC--CCCCCEEEeCCcc-e-ecCCCeEEEEEecCC-CCCEEEE
Confidence 999999999 99999999988 55222222 11455542 1134555544443 3 889999999999987 4468999
Q ss_pred EeCCcccccCCce-----EEecceEEEeccCCCCCeEEEEEEEcCCC-----CceeEEEEEEe
Q psy14542 257 YKQDSPVEESDRI-----QRIGSSLSISHVEESDSGVWNCVANNSEG-----QDKMQLFIQYA 309 (371)
Q Consensus 257 ~~~~~~~~~~~~~-----~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g-----~~~~~~~l~v~ 309 (371)
++++..+...... ...++.|.|.++..+|+|.|+|.|.|..+ ..+..+.|.|.
T Consensus 133 ~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~ 195 (196)
T 3p2t_A 133 CKERAAHPLLCLRSEHGAQQHQAEFPMSPVTSVHGGTYRCFSSHGFSHYLLSHPSDPLELIVS 195 (196)
T ss_dssp EETTCCCGGGSEEEEEEEEEEEEEEEECSCCGGGCEEEEEEEECGGGTTEECCCCCCEEEEEC
T ss_pred EeCCCcccceeecccccccCcceEEEeCCCcccCCCeEEEEEEcCCCCcccCCCCCCEEEEeC
Confidence 9999876543321 13456899999999999999999999876 23445556553
No 150
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A
Probab=99.89 E-value=1.3e-21 Score=154.73 Aligned_cols=169 Identities=12% Similarity=0.117 Sum_probs=118.9
Q ss_pred ecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccc
Q psy14542 109 DVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYR 188 (371)
Q Consensus 109 ~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g 188 (371)
.+|+.++|.|.+.|.|. +.+.|++...... ... .. .......|.|.+++.+| +|
T Consensus 14 ~~G~~v~L~C~~~g~P~-p~i~W~~~~~~~~-~~~--~~---------------------~~~~~~~L~I~~v~~~D-~G 67 (202)
T 1vca_A 14 QIGDSVSLTCSTTGCES-PFFSWRTQIDSPL-NGK--VT---------------------NEGTTSTLTMNPVSFGN-EH 67 (202)
T ss_dssp ETTSCEEEEEEEESCSS-CEEEEEETTCCCC-SSE--EE---------------------EETTEEEEEESSCCGGG-CS
T ss_pred cCCCcEEEEEeecCCCC-CeEEEECCCCCCc-cce--EE---------------------EcCCccEEEECcCCHHH-CE
Confidence 59999999999998887 7899988431100 000 00 00012469999999999 99
Q ss_pred eeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecCCC---CceEEEeCCccccc
Q psy14542 189 SYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPL---PTIKWYKQDSPVEE 265 (371)
Q Consensus 189 ~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~---~~v~W~~~~~~~~~ 265 (371)
.|+|.+.|. .+...... .|.|. .+|.......... +.+|+.++|.|.+.+.++ ++|.|++++..+..
T Consensus 68 ~Y~C~a~n~-~~~~~~~~---~l~V~-----~~p~~~~~~~~~~-~~~G~~~~L~C~~~~~~p~~~~~i~W~k~~~~l~~ 137 (202)
T 1vca_A 68 SYLCTATCE-SRKLEKGI---QVEIY-----SFPKDPEIHLSGP-LEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKS 137 (202)
T ss_dssp EEEEEEEET-TEEEEEEE---EEEEE-----BCCSCCEEEESSC-EETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEE
T ss_pred EEEEEEEEC-CceEeeEE---EEEEE-----eCCCCCEeCCceE-EcCCCCEEEEEEECCcCCCCCeEEEEEeCCeECcc
Confidence 999999998 66655555 77777 3333222222234 899999999999987543 36999999987643
Q ss_pred CCce--------EEecceEEEeccCCCCCeEEEEEEEcCCCC-------ceeEEEEEEecCcc
Q psy14542 266 SDRI--------QRIGSSLSISHVEESDSGVWNCVANNSEGQ-------DKMQLFIQYAHGKY 313 (371)
Q Consensus 266 ~~~~--------~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~-------~~~~~~l~v~~~p~ 313 (371)
.... ......|.|.....+|+|+|+|+|.|..|. ...++.|.|.++|.
T Consensus 138 ~~~~~~~~~~~~~~~~~~l~i~~~~~d~~g~ytC~A~n~~~~~~~~~~~~~~~~~L~V~y~P~ 200 (202)
T 1vca_A 138 QEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMDSVPTVRQAVKELQVYISPK 200 (202)
T ss_dssp EECCSCCSSCCCEEEEEEEEECCCGGGTTCEEEEEEEECSCCCTTSCSEEEEEEECCEECCC-
T ss_pred cccccccCcCcceEEEEEEEEEeeeccCCCeEEEEEEccccCCCCcceeEeeEEEEEEecCCC
Confidence 3211 122345678888899999999999998876 35678899998887
No 151
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A
Probab=99.89 E-value=8.3e-23 Score=163.27 Aligned_cols=183 Identities=22% Similarity=0.355 Sum_probs=129.9
Q ss_pred cccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC-----------Cee-----EEEEccCCcCCC
Q psy14542 8 KSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN-----------SDE-----VLVLDRVQREDA 71 (371)
Q Consensus 8 ~~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~-----------~~~-----~l~i~~~~~~d~ 71 (371)
..+|.+...|.. ..+.+|++++|.|.+ .+.|.+.+.|++++..+... ..+ .|.|.+++.+|+
T Consensus 7 ~~pp~i~~~p~~-~~v~~G~~v~l~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~ 84 (212)
T 2v9r_A 7 DFPPRIVEHPSD-LIVSKGEPATLNCKA-EGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDE 84 (212)
T ss_dssp CEEEEEEECCCC-EEECTTCCEEECCEE-EEESCCEEEEEETTEECCCTTTCTTCSEEECTTSCEEESSCCCCSSCCCSC
T ss_pred cCCcceecCCCc-eEEeCCCcEEEEEEc-CCCCCCEEEEEECCEEeeccccccccceEEecCCcEEEEEEEecCCCcccC
Confidence 346788888887 999999999999965 55678899999999887532 122 234456799999
Q ss_pred eEEEEEEEcCCCCe-EEEEEEEEecceeeEecCCc-eeeecCCcEEEEEEe-cCCCCCceEEEeeCCEEeeeCCeeEEEE
Q psy14542 72 GMYQCHVSADDDSA-QMSAQVILGGELVEIASSNQ-VVVDVGHRIELHCRV-SPKRLSSAKAWLKDGLVLRRNSDEVLVL 148 (371)
Q Consensus 72 G~Y~C~~~~~~~~~-~~~~~l~v~~~~~~~~~~~~-~~~~~g~~v~l~C~~-~~~~~~~~v~W~~~~~~~~~~~~~~~~~ 148 (371)
|.|+|.+.+..+.. ...+.|.|...++.+...+. ..+..|+.+.|.|.+ .+.+. +.+.|++++..+.....
T Consensus 85 G~Y~C~~~n~~g~~~~~~~~l~V~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~-~~v~W~~~~~~l~~~~~----- 158 (212)
T 2v9r_A 85 GVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVAVGEPAVMECQPPRGHPE-PTISWKKDGSPLDDKDE----- 158 (212)
T ss_dssp EEEEEEEEETTEEEECCCEEEEECEECSSCSBCCCCEEEETTSCEEEECBCCCEESC-CEEEEEETTEEECTTST-----
T ss_pred eEEEEEEECCCCceeecceEEEEEeccccceeCCCceEecCCCcEEEEEecCCCCCC-CEEEEEECCccCCCCcc-----
Confidence 99999999876654 34566776643444443333 345899999999998 67676 89999999998765421
Q ss_pred cccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeee-eeccceeeeecchhccccceeee
Q psy14542 149 DRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLL-SVNRGRLSLTENKRLLSAAKMFE 227 (371)
Q Consensus 149 ~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~-~~~~~~l~v~~~~~~~~p~~~~~ 227 (371)
+ ....+..|.|.++..+| .|.|+|.+.|. .|.... .+ .|.|. .+|.+...
T Consensus 159 ------------------~-~~~~~~~L~i~~~~~~d-~G~Y~C~a~N~-~g~~~s~~~---~l~V~-----~~P~~~~~ 209 (212)
T 2v9r_A 159 ------------------R-ITIRGGKLMITYTRKSD-AGKYVCVGTNM-VGERESEVA---ELTVL-----ERPSFVKA 209 (212)
T ss_dssp ------------------T-EEEETTEEEESSCCGGG-CEEEEEEEEET-TEEEECCCE---EEEEE-----C-------
T ss_pred ------------------e-EEccCCeEEEeeCCHhh-CeeEEEEEecc-cCceecceE---EEEEE-----eCchHhhh
Confidence 1 11223689999999999 99999999998 665433 24 77777 56665543
No 152
>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}
Probab=99.88 E-value=8e-23 Score=161.19 Aligned_cols=171 Identities=13% Similarity=0.103 Sum_probs=109.6
Q ss_pred ceeeEecCCceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccce
Q psy14542 96 ELVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGE 175 (371)
Q Consensus 96 ~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~ 175 (371)
.+|.+...+...+.+|++++|.|.+.+.+. .+.|+|++..+..... . ......+..
T Consensus 4 ~~P~i~~~p~~~v~~G~~v~L~C~~~~~~~--~~~W~k~g~~~~~~~~------~----------------~~~~~~~~~ 59 (196)
T 2d3v_A 4 SKATLWAEPGSVISRGNSVTIRCQGTLEAQ--EYRLVKEGSPEPWDTQ------N----------------PLEPKNKAR 59 (196)
T ss_dssp CBCEEEEESCSEEETTCCEEEEEECCTTCC--EEEEEETTCSSCSEEE------C----------------CCSSTTEEE
T ss_pred CCCEEEeCCCCcccCCCeEEEEEeCCCCCc--EEEEEECCCCCCcccc------c----------------ccCCccccE
Confidence 355566556556689999999999987654 9999999875532110 0 000112267
Q ss_pred EEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecCCCCceE
Q psy14542 176 LIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIK 255 (371)
Q Consensus 176 l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~ 255 (371)
|.|.+++.+| +|.|+|.+.+. .+....+. ...|.|... ..+|.+...+. .. +.+|+.++|.|.+.+.| +.+.
T Consensus 60 L~i~~v~~~D-~G~Y~C~a~n~-~g~~~~s~-~~~l~V~~~--~~~p~i~~~~~-~~-v~~G~~v~L~C~~~~~p-~~~~ 131 (196)
T 2d3v_A 60 FSIPSMTEHH-AGRYRCYYYSP-AGWSEPSD-PLELVVTGF--YNKPTLSALPS-PV-VTSGENVTLQCGSRLRF-DRFI 131 (196)
T ss_dssp EEESSCCGGG-CEEEEEEEEET-TEECBCCC-CEEEEEECS--SCCCEEEC-------------CEEEEEESSCC-SEEE
T ss_pred EEeccCChhH-CeEEEEEEeCC-CCcCCcCc-cEEEEecCC--CCCCeEEccCC-cc-ccCCCcEEEEEEcCCCC-CEEE
Confidence 9999999999 99999999887 44322221 115555531 12455544432 34 88999999999999888 8999
Q ss_pred EEeCCcccccCCce--E----EecceEEEeccCCCCCeEEEEEEEcCCC
Q psy14542 256 WYKQDSPVEESDRI--Q----RIGSSLSISHVEESDSGVWNCVANNSEG 298 (371)
Q Consensus 256 W~~~~~~~~~~~~~--~----~~~~~l~i~~~~~~d~G~Y~C~a~n~~g 298 (371)
|++++..+...... . ...+.|.|.++..+|+|.|+|.|.|..+
T Consensus 132 W~k~g~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~ 180 (196)
T 2d3v_A 132 LTEEGDHKLSWTLDSQLTPSGQFQALFPVGPVTPSHRWMLRCYGSRRHI 180 (196)
T ss_dssp EEEC---CCEEEEECEECTTSCEEEEEECCCCBTTBCEEEEEEEEETTE
T ss_pred EEccCCcccccccccccccCCCceeEEEeeecCcccCeeEEEEEEccCC
Confidence 99999876532211 1 1236899999999999999999999765
No 153
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4
Probab=99.88 E-value=7.3e-22 Score=153.79 Aligned_cols=157 Identities=20% Similarity=0.357 Sum_probs=120.8
Q ss_pred cceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC-----------CeeEEEEccCCcCCCeEEEEEE
Q psy14542 10 SLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN-----------SDEVLVLDRVQREDAGMYQCHV 78 (371)
Q Consensus 10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~-----------~~~~l~i~~~~~~d~G~Y~C~~ 78 (371)
+|.+...|.. ..+.+|++++|.|.+. +.|.+.+.|++++..+... ....|.|.+++.+|+|.|+|.+
T Consensus 2 ~~~~~~~p~~-~~v~~G~~v~l~C~~~-~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~ 79 (182)
T 1rhf_A 2 GLKLMGAPVK-LTVSQGQPVKLNCSVE-GMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQV 79 (182)
T ss_dssp -----CCCEE-EEEETTCCEEEEEEEE-SCSSCCEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEE
T ss_pred CCEEEeCCcc-eEEeCCCcEEEEEEEe-CCCCCeEEEEECCeecCCCCceEEEecCCCceEEEEEeecCcccCeEEEEEE
Confidence 4566777777 8899999999999655 5778899999999877654 1368999999999999999999
Q ss_pred EcCCCCe-EEEEEEEEecceeeEecCCc-eeeecCCcEEEEEEecCCCCCc-eEEEeeCCEEeeeCCeeEEEEcccCcCC
Q psy14542 79 SADDDSA-QMSAQVILGGELVEIASSNQ-VVVDVGHRIELHCRVSPKRLSS-AKAWLKDGLVLRRNSDEVLVLDRVQRED 155 (371)
Q Consensus 79 ~~~~~~~-~~~~~l~v~~~~~~~~~~~~-~~~~~g~~v~l~C~~~~~~~~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~ 155 (371)
.+..+.. ...+.|.|. .+|.+...+. ..+.+|+.+.|.|.+.+.|. + .+.|++++..+.....
T Consensus 80 ~~~~~~~~~~~~~l~V~-~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~-p~~v~W~~~~~~~~~~~~------------ 145 (182)
T 1rhf_A 80 EDGGETEISQPVWLTVE-GVPFFTVEPKDLAVPPNAPFQLSCEAVGPPE-PVTIVWWRGTTKIGGPAP------------ 145 (182)
T ss_dssp SSCTTCEECCCEEEEEE-CSCEEEECCCCEEECTTCCEEEEEEEECSSS-CCEEEEEETTEECSCSEE------------
T ss_pred EcCCCcEEEEEEEEEEe-cCCeEEecCcceEecCCCEEEEEeEecCCCC-CCEEEEEcCCeECCCCCC------------
Confidence 9876653 467888888 5565555444 34589999999999999887 6 9999999987754311
Q ss_pred CeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeecccccee
Q psy14542 156 AGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGAS 202 (371)
Q Consensus 156 ~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~ 202 (371)
....|.|.++ .| .|.|+|.+.|. .|..
T Consensus 146 ----------------~~~~L~i~~~--~d-~G~Y~C~a~N~-~g~~ 172 (182)
T 1rhf_A 146 ----------------SPSVLNVTGV--TQ-STMFSCEAHNL-KGLA 172 (182)
T ss_dssp ----------------SSEEEEECCC--SS-CEEEEEEEEET-TEEE
T ss_pred ----------------CceEEEEecc--cc-CeEEEEEEECC-CCCc
Confidence 2257888887 57 99999999998 6654
No 154
>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4
Probab=99.88 E-value=1.2e-22 Score=167.79 Aligned_cols=263 Identities=14% Similarity=0.112 Sum_probs=108.3
Q ss_pred EEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEe--CCEEE-eeC-CeeEEEEccCCcCCCeEEEEEEEcCCCCeEEE
Q psy14542 13 IEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLK--DGLVL-RRN-SDEVLVLDRVQREDAGMYQCHVSADDDSAQMS 88 (371)
Q Consensus 13 ~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~--~~~~~-~~~-~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~ 88 (371)
+.+.|+. ..+.+|++++|.|...... ...+.|.- .+..+ ..+ ....|.|.+++.+ |.|.|.+..........
T Consensus 2 ~~v~P~~-~~V~~G~sv~l~Cs~~c~~-p~~~~~~t~l~~~~~~~~g~~~~~~~l~~v~~~--~~y~C~~~~~~~~~~~~ 77 (291)
T 1mq8_A 2 TSVSPSK-VILPRGGSVLVTCSTSCDQ-PKLLGIETPLPKKELLLPGNNRKVYELSNVQED--SQPMCYSNCPDGQSTAK 77 (291)
T ss_dssp EEEECSE-EEECTTCEEEEEEEECCSS-CSEEEEECSSCCCCCCCSCSSEEEEEEESCCSC--CCCEEEEECSSCEEEEE
T ss_pred eEEeCCc-cEEcCCCeEEEEEeCCCCC-CccceEEecCCCcccccCCCceEEEEEEecccC--CeEEEEEEcCCccEEEE
Confidence 5677877 8999999999999765322 23488853 22222 222 3346888988843 56999998655555777
Q ss_pred EEEEEecceeeEecCCc-eeeecCCcEEEEEEecCCCCCc--eEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeC
Q psy14542 89 AQVILGGELVEIASSNQ-VVVDVGHRIELHCRVSPKRLSS--AKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIED 165 (371)
Q Consensus 89 ~~l~v~~~~~~~~~~~~-~~~~~g~~v~l~C~~~~~~~~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~ 165 (371)
+.|.|+..|..+...+. ..+.+|+.++|.|.+.+..+.. .|+|+|++..+..... . .+
T Consensus 78 v~l~V~~~P~~v~I~~~~~~~~~G~~~~LtC~v~g~~P~~~l~itW~kg~~~l~~~~~------~---~~---------- 138 (291)
T 1mq8_A 78 TFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPA------V---GE---------- 138 (291)
T ss_dssp CEEEECBCCSCCCBCCCCSBCCSSCCCEEEEEECCCBSTTTEEEEEESSSSEEEEEEC------C---BT----------
T ss_pred EEEEEecCCCCCEEecCCccccCCCCEEEEEEecCccCCCCcEEEEEECCEEeecccC------C---CC----------
Confidence 88888844443333333 3358999999999998875523 6899999987764320 0 00
Q ss_pred CceeEeccceEEEEEeecCCccceeEEEeecccc--ce--eeeeeccceeeeecchhccccceeee-eeeeeeeecCCeE
Q psy14542 166 GKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLT--GA--SLLSVNRGRLSLTENKRLLSAAKMFE-KHRILNVKKDESV 240 (371)
Q Consensus 166 ~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~--~~--~~~~~~~~~l~v~~~~~~~~p~~~~~-~~~~~~~~~g~~~ 240 (371)
. ....|.+...+.++ .+.|+|+|.+... |. .....+...+.|. ++|..... ..... +.+|+.+
T Consensus 139 -~----~~~~l~~~~~~~D~-g~~~~C~A~~~l~~~g~~l~~~~s~~~~L~V~-----~~P~~~~~~~~p~~-l~eG~~v 206 (291)
T 1mq8_A 139 -P----AEVTTTVLVRRDHH-GANFSCRTELDLRPQGLELFENTSAPYQLQTF-----VLPATPPQLVSPRV-LEVDTQG 206 (291)
T ss_dssp -T----EEEEEECCCSSSCS-SCEEEEEEEEECGGGTSCEEEECCCCEECBC----------------------------
T ss_pred -C----ceEEEEeeeeeccC-CceEEEEEEecCCccCCccccccccceEEEEE-----ecCCCCceecCCcC-ccCCCeE
Confidence 0 11345555445555 8899999998722 21 1112222367776 44322111 11123 7899999
Q ss_pred EEEEEeecCCCC---ceEEEeCCcccccCCceEEecceEEEecc---CC--CCCeEEEEEEEcCCCCceeEEEEEEecCc
Q psy14542 241 ILPCSAQGNPLP---TIKWYKQDSPVEESDRIQRIGSSLSISHV---EE--SDSGVWNCVANNSEGQDKMQLFIQYAHGK 312 (371)
Q Consensus 241 ~l~C~~~~~p~~---~v~W~~~~~~~~~~~~~~~~~~~l~i~~~---~~--~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p 312 (371)
+|.|.+.|.+++ .+.|+++|+.+..... ..++.+.+... .. ++.+.|+|.|.|..........|.|...|
T Consensus 207 ~l~C~~~g~~P~~~~~v~w~~~g~~l~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~l~v~~~~ 284 (291)
T 1mq8_A 207 TVVCSLDGLFPVSEAQVHLALGDQRLNPTVT--YGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFP 284 (291)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEEcCCCCCCcccEEEEEECCEecCceee--ecCCeEEEEEecceeEcCCCCEEEEEEEEeCCcceEEEEEEEEEcCC
Confidence 999999997554 5999999998875321 12334444333 23 44678889998866555666777776643
No 155
>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.88 E-value=2.5e-21 Score=151.47 Aligned_cols=157 Identities=14% Similarity=0.172 Sum_probs=118.5
Q ss_pred ccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEee--------CCeeEEEEccCCcCCCeEEEEEEEc
Q psy14542 9 SSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRR--------NSDEVLVLDRVQREDAGMYQCHVSA 80 (371)
Q Consensus 9 ~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~--------~~~~~l~i~~~~~~d~G~Y~C~~~~ 80 (371)
++|.|...|.. .+.+|++++|.|... + +...+.|+|+|..+.. .....|.|.+++.+|+|.|+|.+.+
T Consensus 3 ~~P~i~~~p~~--~v~~G~~v~L~C~~~-~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~ 78 (188)
T 1oll_A 3 PKPFIWAEPHF--MVPKEKQVTICCQGN-Y-GAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRV 78 (188)
T ss_dssp CCCEEEEESCS--EEETTCCEEEEEECC-T-TCCEEEEEETTEEEEEECCSSCTTCCEEEEEESSCCGGGCEEEEEEEEE
T ss_pred CCCEEEeecCC--cCCCCCCEEEEEecC-C-CCCEEEEEECCCcccccccccCCCcceeEEEeCcCCcccCeEEEEEecC
Confidence 56888888886 799999999999643 3 3467999999987652 1567899999999999999999987
Q ss_pred CCC--CeEEEEEEEEec--ceeeEecCCceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCC
Q psy14542 81 DDD--SAQMSAQVILGG--ELVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDA 156 (371)
Q Consensus 81 ~~~--~~~~~~~l~v~~--~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (371)
..+ ..+..+.|.|.. .+|.+...+...+.+|+.++|.|.+.+. . +.+.|+|++..+....
T Consensus 79 ~~~~~~~s~~~~l~V~~~~~~p~i~~~p~~~v~~G~~v~L~C~~~~~-~-~~~~w~k~g~~~~~~~-------------- 142 (188)
T 1oll_A 79 GELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGEKVTFYCRLDTA-T-SMFLLLKEGRSSHVQR-------------- 142 (188)
T ss_dssp TTEECCCCCCEEEEEESCSCCCEEEEESCSEEETTCEEEEEEECSSS-C-SEEEEEEESSSCEEEE--------------
T ss_pred CCCCCCCCCceEEEecccCCCCeEEECCCCccccCCEEEEEEEcCCC-C-CEEEEEECCccccccc--------------
Confidence 543 224556777753 2455655555556899999999998764 3 5899999886554310
Q ss_pred eeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeecc
Q psy14542 157 GMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNK 197 (371)
Q Consensus 157 g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~ 197 (371)
.....+..|.|.+++.+| +|.|+|.+.+.
T Consensus 143 -----------~~~~~~~~L~I~~v~~~d-~G~Y~C~a~n~ 171 (188)
T 1oll_A 143 -----------GYGKVQAEFPLGPVTTAH-RGTYRCFGSYN 171 (188)
T ss_dssp -----------EECSSEEEEEEEECCGGG-CEEEEEECEEE
T ss_pred -----------cCCCceeEEEECCCCcCC-CcEEEEEEEcC
Confidence 000112689999999999 99999999886
No 156
>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A
Probab=99.88 E-value=5e-22 Score=156.90 Aligned_cols=164 Identities=15% Similarity=0.239 Sum_probs=117.1
Q ss_pred cccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEee--------CCeeEEEEccCCcCCCeEEEEEEE
Q psy14542 8 KSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRR--------NSDEVLVLDRVQREDAGMYQCHVS 79 (371)
Q Consensus 8 ~~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~--------~~~~~l~i~~~~~~d~G~Y~C~~~ 79 (371)
.++|.|...|.. .+.+|++++|.|.+. +.+. .+.|+|++..+.. .....|.|.+++.+|+|.|+|.+.
T Consensus 3 ~~~P~i~~~p~~--~v~~G~~v~L~C~~~-~~~~-~~~W~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~ 78 (198)
T 1ugn_A 3 LPKPTLWAEPGS--VITQGSPVTLRCQGG-QETQ-EYRLYREKKTAPWITRIPQELVKKGQFPIPSITWEHTGRYRCYYG 78 (198)
T ss_dssp CCCCEEEEESCS--EEETTCCEEEEEECC-TTCC-CEEEEESSSCCHHHHTSCHHHHTTTEEEESSCCGGGCEEEEEEEE
T ss_pred CCCCeEeccCCC--cccCCCcEEEEEEec-CCCc-EEEEEECCccccccccccccCCcccEEEECCCCHHHCeEEEEEEE
Confidence 357888888875 789999999999654 4444 6999999887631 156789999999999999999999
Q ss_pred cCC-C--CeEEEEEEEEec--ceeeEecCCceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcC
Q psy14542 80 ADD-D--SAQMSAQVILGG--ELVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQRE 154 (371)
Q Consensus 80 ~~~-~--~~~~~~~l~v~~--~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~ 154 (371)
+.. + ..+..+.|.|.. ..|.+...+...+.+|+.++|.|.+.+. . +.+.|+|++..+........ ..
T Consensus 79 n~~~g~~~~s~~~~l~V~~~~~~p~i~~~~~~~v~~G~~v~L~C~~~~~-~-~~v~W~k~g~~~~~~~~~~~-~~----- 150 (198)
T 1ugn_A 79 SDTAGRSESSDPLELVVTGAYIKPTLSAQPSPVVNSGGNVTLQCDSQVA-F-DGFILCKEGEDEHPQCLNSQ-PH----- 150 (198)
T ss_dssp ETTTEECCCCCCEEEEEECSSCCCEEEEESCSEEETTCCEEEEEECSSC-C-SEEEEEEC------CEEEC---------
T ss_pred CCCCCcccCCccEEEEEcccccCCccccCCccccCCCCcEEEEEecCCC-C-cEEEEEECCCccCCcccccc-cc-----
Confidence 876 3 335567777763 2455555454566899999999999887 4 79999999987643211000 00
Q ss_pred CCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeecc
Q psy14542 155 DAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNK 197 (371)
Q Consensus 155 ~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~ 197 (371)
. ++ .....|.|.+++.+| .|.|+|.+.|.
T Consensus 151 ~---------~~----~~~~~L~i~~v~~~D-~G~Y~C~a~n~ 179 (198)
T 1ugn_A 151 A---------RG----SSRAIFSVGPVSPSR-RWWYRCYAYDS 179 (198)
T ss_dssp ----------------CCEEEEEECCCCTTS-CEEEEEEEECT
T ss_pred C---------CC----cceeEEEecccCccc-CeEEEEEEEeC
Confidence 0 00 012679999999999 99999999987
No 157
>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}
Probab=99.88 E-value=5.4e-22 Score=156.42 Aligned_cols=164 Identities=15% Similarity=0.219 Sum_probs=110.3
Q ss_pred cccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEee--------CCeeEEEEccCCcCCCeEEEEEEE
Q psy14542 8 KSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRR--------NSDEVLVLDRVQREDAGMYQCHVS 79 (371)
Q Consensus 8 ~~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~--------~~~~~l~i~~~~~~d~G~Y~C~~~ 79 (371)
.++|.+...|.. .+.+|++++|.|.+. +.+. .+.|+|++..+.. .....|.|.+++.+|+|.|+|.+.
T Consensus 3 ~~~P~i~~~p~~--~v~~G~~v~L~C~~~-~~~~-~~~W~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~ 78 (196)
T 2d3v_A 3 LSKATLWAEPGS--VISRGNSVTIRCQGT-LEAQ-EYRLVKEGSPEPWDTQNPLEPKNKARFSIPSMTEHHAGRYRCYYY 78 (196)
T ss_dssp CCBCEEEEESCS--EEETTCCEEEEEECC-TTCC-EEEEEETTCSSCSEEECCCSSTTEEEEEESSCCGGGCEEEEEEEE
T ss_pred CCCCEEEeCCCC--cccCCCeEEEEEeCC-CCCc-EEEEEECCCCCCcccccccCCccccEEEeccCChhHCeEEEEEEe
Confidence 367888888875 789999999999654 4444 8999999875531 156889999999999999999998
Q ss_pred cCCCCe--EEEEEEEEecc--eeeEecCCceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCC
Q psy14542 80 ADDDSA--QMSAQVILGGE--LVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQRED 155 (371)
Q Consensus 80 ~~~~~~--~~~~~l~v~~~--~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~ 155 (371)
+..+.. +..+.|.|... +|.+...+...+.+|+.++|.|.+.+.+ +.+.|+|++..+........ .. .
T Consensus 79 n~~g~~~~s~~~~l~V~~~~~~p~i~~~~~~~v~~G~~v~L~C~~~~~p--~~~~W~k~g~~~~~~~~~~~-~~-----~ 150 (196)
T 2d3v_A 79 SPAGWSEPSDPLELVVTGFYNKPTLSALPSPVVTSGENVTLQCGSRLRF--DRFILTEEGDHKLSWTLDSQ-LT-----P 150 (196)
T ss_dssp ETTEECBCCCCEEEEEECSSCCCEEEC-----------CEEEEEESSCC--SEEEEEEC---CCEEEEECE-EC-----T
T ss_pred CCCCcCCcCccEEEEecCCCCCCeEEccCCccccCCCcEEEEEEcCCCC--CEEEEEccCCcccccccccc-cc-----c
Confidence 865422 34567777632 4556555544568999999999998876 58999999987643211000 00 0
Q ss_pred CeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeecc
Q psy14542 156 AGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNK 197 (371)
Q Consensus 156 ~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~ 197 (371)
++ .....|.|.+++.+| .|.|+|.+.|.
T Consensus 151 ---------~~----~~~~~L~I~~v~~~D-~G~Y~C~a~n~ 178 (196)
T 2d3v_A 151 ---------SG----QFQALFPVGPVTPSH-RWMLRCYGSRR 178 (196)
T ss_dssp ---------TS----CEEEEEECCCCBTTB-CEEEEEEEEET
T ss_pred ---------CC----CceeEEEeeecCccc-CeeEEEEEEcc
Confidence 00 011579999999999 99999999987
No 158
>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A
Probab=99.88 E-value=3.1e-22 Score=158.13 Aligned_cols=182 Identities=15% Similarity=0.130 Sum_probs=120.9
Q ss_pred ceeeEecCCceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccce
Q psy14542 96 ELVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGE 175 (371)
Q Consensus 96 ~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~ 175 (371)
.+|.+...+...+.+|++++|.|.+.+.+. .+.|+|++..+..... ..........
T Consensus 4 ~~P~i~~~p~~~v~~G~~v~L~C~~~~~~~--~~~W~k~g~~~~~~~~----------------------~~~~~~~~~~ 59 (198)
T 1ugn_A 4 PKPTLWAEPGSVITQGSPVTLRCQGGQETQ--EYRLYREKKTAPWITR----------------------IPQELVKKGQ 59 (198)
T ss_dssp CCCEEEEESCSEEETTCCEEEEEECCTTCC--CEEEEESSSCCHHHHT----------------------SCHHHHTTTE
T ss_pred CCCeEeccCCCcccCCCcEEEEEEecCCCc--EEEEEECCcccccccc----------------------ccccCCcccE
Confidence 345565556666689999999999988765 7999999876642110 0000112367
Q ss_pred EEEEEeecCCccceeEEEeecccc-ceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecCCCCce
Q psy14542 176 LIIHQVDESDRYRSYQCRGVNKLT-GASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTI 254 (371)
Q Consensus 176 l~i~~~~~~d~~g~y~C~~~~~~~-~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v 254 (371)
|.|.+++..| +|.|+|.+.|. . +....+. ...|.|... ..+|.+...+. .. +..|+.++|.|.+.+. .+.+
T Consensus 60 L~i~~v~~~D-~G~Y~C~a~n~-~~g~~~~s~-~~~l~V~~~--~~~p~i~~~~~-~~-v~~G~~v~L~C~~~~~-~~~v 131 (198)
T 1ugn_A 60 FPIPSITWEH-TGRYRCYYGSD-TAGRSESSD-PLELVVTGA--YIKPTLSAQPS-PV-VNSGGNVTLQCDSQVA-FDGF 131 (198)
T ss_dssp EEESSCCGGG-CEEEEEEEEET-TTEECCCCC-CEEEEEECS--SCCCEEEEESC-SE-EETTCCEEEEEECSSC-CSEE
T ss_pred EEECCCCHHH-CeEEEEEEECC-CCCcccCCc-cEEEEEccc--ccCCccccCCc-cc-cCCCCcEEEEEecCCC-CcEE
Confidence 9999999999 99999999987 4 3222121 115666531 12445444332 34 8899999999999988 7899
Q ss_pred EEEeCCcccccCCce---EE---ecceEEEeccCCCCCeEEEEEEEcCCCC-----ceeEEEEEEe
Q psy14542 255 KWYKQDSPVEESDRI---QR---IGSSLSISHVEESDSGVWNCVANNSEGQ-----DKMQLFIQYA 309 (371)
Q Consensus 255 ~W~~~~~~~~~~~~~---~~---~~~~l~i~~~~~~d~G~Y~C~a~n~~g~-----~~~~~~l~v~ 309 (371)
.|++++..+...... .. ..+.|.|.++..+|+|.|+|.|.|..+. .+..+.|.|.
T Consensus 132 ~W~k~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~ 197 (198)
T 1ugn_A 132 ILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCYAYDSNSPYEWSLPSDLLELLVL 197 (198)
T ss_dssp EEEEC------CEEEC------CCEEEEEECCCCTTSCEEEEEEEECTTSTTEECCCCCCEEEEEE
T ss_pred EEEECCCccCCccccccccCCCcceeEEEecccCcccCeEEEEEEEeCCCCccccCcCceEEEEec
Confidence 999999876433211 11 1368999999999999999999998763 2455666654
No 159
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*
Probab=99.88 E-value=8e-22 Score=157.05 Aligned_cols=191 Identities=17% Similarity=0.239 Sum_probs=129.9
Q ss_pred eeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCc
Q psy14542 107 VVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDR 186 (371)
Q Consensus 107 ~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~ 186 (371)
.+.+|++++|.|...+.+. ..+.|++++.......-.. ...... .........++..+..+..|.|.+++..|
T Consensus 10 ~v~~G~~v~L~C~~~~~~~-~~v~W~~~~~~~~~~~i~~-~~~~~~----~~~~~~~~~~r~~~~~~~~L~i~~v~~~D- 82 (208)
T 3r4d_A 10 QVAEDNNVLLLVHNLPLAL-GAFAWYKGNTTAIDKEIAR-FVPNSN----MNFTGQAYSGREIIYSNGSLLFQMITMKD- 82 (208)
T ss_dssp EEETTCCEEEEEECCCSSC-SEEEEEESSCCCGGGEEEE-EEGGGT----EEEECTTCCSSEEECTTSCEEECSCCGGG-
T ss_pred eeecCCcEEEEEeCCCCCc-eEEEeccCCCCCccceEEE-EecCCC----ccccCccccceeEEecCCeEEEccccccC-
Confidence 4579999999999777666 8999998754322211000 000000 00000001235556666789999999999
Q ss_pred cceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccC
Q psy14542 187 YRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEES 266 (371)
Q Consensus 187 ~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~ 266 (371)
+|.|+|.+.+...+...... .|.|... ...|.+.... .. +..|+.+.|.|.+.+.| +.+.|++++..+...
T Consensus 83 ~G~Y~C~~~~~~~~~~~~~~---~l~V~~~--~~~p~i~~~~--~~-~~~g~~v~l~C~~~~~p-p~i~W~~~g~~l~~~ 153 (208)
T 3r4d_A 83 MGVYTLDMTDENYRRTQATV---RFHVHQP--VTQPFLQVTN--TT-VKELDSVTLTCLSNDIG-ANIQWLFNSQSLQLT 153 (208)
T ss_dssp CEEEEEEEECSSCEEEEEEE---EEEEECC--CCCCEEEESC--SS-CCTTCCEEEEEECSCTT-CEEEEEETTEECCCC
T ss_pred CeEEEEEEEcccCceeEEEE---EEEeccC--CCCCEEecCC--ce-EeeCCCEEEEEECCCCC-CceEEEECCEeCCCC
Confidence 99999999987334444444 5666532 1224443332 23 78899999999999866 799999999998877
Q ss_pred CceEEe--cceEEEeccCCCCCeEEEEEEEcCCCCc-eeEEEEEEecCcc
Q psy14542 267 DRIQRI--GSSLSISHVEESDSGVWNCVANNSEGQD-KMQLFIQYAHGKY 313 (371)
Q Consensus 267 ~~~~~~--~~~l~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~v~~~p~ 313 (371)
.++... +++|.|.++..+|+|.|+|.|.|..|.. +..+.|.|..++.
T Consensus 154 ~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~s~~~~l~v~~~~~ 203 (208)
T 3r4d_A 154 ERMTLSQNNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDIIFDPH 203 (208)
T ss_dssp SSEEEETTTTEEEESSCCGGGCEEEEEEEECTTCCEECCCEEECCC----
T ss_pred CCeEEcCCCCEEEEeccCHHhCeEEEEEEecCCCcccCCceeeeEEeCCc
Confidence 766643 3789999999999999999999999985 5568888877766
No 160
>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}
Probab=99.88 E-value=5.9e-22 Score=154.46 Aligned_cols=158 Identities=17% Similarity=0.224 Sum_probs=119.9
Q ss_pred ecccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeCCeeEEEEccCCcCCCeEEEEEEEcCCC--C
Q psy14542 7 VKSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHVSADDD--S 84 (371)
Q Consensus 7 v~~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~--~ 84 (371)
+.++|.+.+.|.. .+.+|++++|.|.. .+ +.+.+.|+|++.... .....|.|.+++.+|+|.|+|.+.+..+ .
T Consensus 5 ~~~~P~i~~~p~~--~v~~G~~v~L~C~~-~~-~~~~~~W~k~g~~~~-~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~ 79 (184)
T 2gi7_A 5 PLPKPSLQALPSS--LVPLEKPVTLRCQG-PP-GVDLYRLEKLSSSRY-QDQAVLFIPAMKRSLAGRYRCSYQNGSLWSL 79 (184)
T ss_dssp CBCCCEEEEESCS--EEETTCCEEEEEEC-ST-TCSEEEEEETTTCCE-ESSSEEEESSCCGGGCEEEEEEEEETTEEBC
T ss_pred CCCCCeEEeCCCc--cccCCCcEEEEEeC-CC-CCCEEEEEECCcccc-CcccEEEECcCChhhCceEEEEEEcCCCccC
Confidence 4567889888885 79999999999964 34 677899999987522 2677899999999999999999998664 2
Q ss_pred eEEEEEEEEec--ceeeEecCCceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEE
Q psy14542 85 AQMSAQVILGG--ELVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCH 162 (371)
Q Consensus 85 ~~~~~~l~v~~--~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~ 162 (371)
.+..+.|.|.. .+|.+...+...+.+|+.++|.|.+.+.+ +.+.|+|++..+.....
T Consensus 80 ~s~~~~l~V~~~~~~p~i~~~p~~~v~~G~~v~l~C~~~~~~--~~~~w~k~g~~~~~~~~------------------- 138 (184)
T 2gi7_A 80 PSDQLELVATGVFAKPSLSAQPGPAVSSGGDVTLQCQTRYGF--DQFALYKEGDPAPYKNP------------------- 138 (184)
T ss_dssp CCCCEEEEEESSSCCCEEEEECCCSSCCTTCEEEEEECSSCC--CEEEEEECCCCTTSCCC-------------------
T ss_pred CCCCEEEEecCcCCCCEEEeCCCceecCCCcEEEEEEcCCCC--cEEEEEECCCcCcceec-------------------
Confidence 24456677742 34555555544557999999999987654 59999999876543210
Q ss_pred EeCCceeEeccceEEEEEeecCCccceeEEEeecc
Q psy14542 163 IEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNK 197 (371)
Q Consensus 163 ~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~ 197 (371)
.......|.|.+++.+| .|.|+|.+.|.
T Consensus 139 ------~~~~~~~L~i~~v~~~D-~G~Y~C~a~n~ 166 (184)
T 2gi7_A 139 ------ERWYRASFPIITVTAAH-SGTYRCYSFSS 166 (184)
T ss_dssp ------CEEEEESSSEEEETTCC-SEEEEEEEECT
T ss_pred ------CCCceEEEEEccCCccC-CeEEEEEEEeC
Confidence 01122578899999999 99999999987
No 161
>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2
Probab=99.88 E-value=9.5e-22 Score=169.09 Aligned_cols=180 Identities=14% Similarity=0.206 Sum_probs=115.3
Q ss_pred CCceeeecCCcEEEEEEecCCC-CCceEEEeeC--CEEeeeCCeeEEEEcc------cCcCCCeeEEEEEeCCceeEec-
Q psy14542 103 SNQVVVDVGHRIELHCRVSPKR-LSSAKAWLKD--GLVLRRNSDEVLVLDR------VQREDAGMYQCHIEDGKYHMLS- 172 (371)
Q Consensus 103 ~~~~~~~~g~~v~l~C~~~~~~-~~~~v~W~~~--~~~~~~~~~~~~~~~~------~~~~~~g~y~~~~~~~~~~~~~- 172 (371)
.+...+.+|+.++|.|.+.+.+ ..+.+.|+|+ +..+.. ...... ..... .+++.+..
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~----~~~~~~~~~~~~~~~~~---------~~R~~~~~~ 73 (344)
T 1za6_B 7 SGAEVVKPGASVKISCKASGYTFTDHAIHWVKQNPGQRLEW----IGYFSPGNDDFKYNERF---------KGKATLTAD 73 (344)
T ss_dssp CCCEEECTTCCEEEEEEEESSCTTSSCEEEEEECSSSCEEE----EEEEETTTTEEEECTTT---------BTTEEEEEE
T ss_pred CCCeEEeCCCcEEEEEEcCCccccccEEEEEEECCCCCcEE----EEEEecCCCceEECccc---------CCcEEEEEe
Confidence 3444568999999999998763 2378999986 322210 001000 00011 12333322
Q ss_pred ----cceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeec
Q psy14542 173 ----SGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQG 248 (371)
Q Consensus 173 ----~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~ 248 (371)
...|.|.+++.+| +|.|.|.+.+. .+...... .|.|..... .+|.+........ +..|+.+.|.|.+.|
T Consensus 74 ~~~~~~~L~I~~v~~~D-~G~Y~C~~~n~-~~~~~~~~---~l~V~~~~~-~~P~i~~~~~~~~-~~~g~~v~L~C~~~g 146 (344)
T 1za6_B 74 TSASTAYVELSSLRSED-TAVYFCTRSLN-MAYWGQGT---LVTVSSAST-KGPSVFPLAPSSK-STSGGTAALGCLVKD 146 (344)
T ss_dssp TTTTEEEEEECSCCGGG-CEEEEEEETTT-TCEECCCE---EEEECSSCC-BCCEEEEECCSCT-TTSSSEEEEEEEEEE
T ss_pred cCCCEEEEEECCCCccc-CEEEEEEEecC-cceecCcE---EEEEecCCC-CCCeEEEcccccc-ccCCCcEEEEEEEee
Confidence 2579999999999 99999999985 43333333 666653211 3444443333333 678999999999998
Q ss_pred C-CC-CceEEEeCCccccc---------CCceEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEE
Q psy14542 249 N-PL-PTIKWYKQDSPVEE---------SDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQL 304 (371)
Q Consensus 249 ~-p~-~~v~W~~~~~~~~~---------~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~ 304 (371)
. |. +.+.|++++..+.. ++++ ...+.|.|..+..+| |.|+|.|.|..+......
T Consensus 147 ~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~~~-~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~~~ 211 (344)
T 1za6_B 147 YFPEPVTVSWNSGALTSGVHTFPAVLQSSGLY-SLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDK 211 (344)
T ss_dssp EBSSCCCEEETTTTBCTTEEECCCEECTTSCE-EEEEEEEEETTHHHH-BCEEEEEEEGGGTEEEEE
T ss_pred EECCCeEEEEecCCccCceeECCCeECCCCCE-EEEEEEEEcHHHcCC-CcEEEEEEeCCCCccceE
Confidence 6 65 79999999876421 1111 123478999988888 999999999988754433
No 162
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}
Probab=99.88 E-value=5.8e-21 Score=152.51 Aligned_cols=166 Identities=18% Similarity=0.238 Sum_probs=123.1
Q ss_pred EeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC---------CeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEEEEEE
Q psy14542 23 VDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN---------SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVIL 93 (371)
Q Consensus 23 ~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~---------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v 93 (371)
...|+.+.|.|.+....|.+.+.|++++..+... ....|.|.+++.+|+|.|+|.+.+..+.....+.|.|
T Consensus 14 ~c~~~~~~l~C~~~~~~p~~~i~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~n~~~~~~~~~~l~v 93 (212)
T 2r15_A 14 QSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSG 93 (212)
T ss_dssp EECSSEEEEEEEBSSCCSSCEEEEEETTEECCCCSSEEEEEETTEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECH
T ss_pred EEcCceEEEEEEEeccCCCceEEEEECCEEccCCCeEEEEEeCCEEEEEECCCCcccCEEEEEEEecCCcceEEEEEEEE
Confidence 4467788888865554668899999999887654 3356999999999999999999998777666666655
Q ss_pred ec--------------------ceeeEecCCc-eeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccC
Q psy14542 94 GG--------------------ELVEIASSNQ-VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQ 152 (371)
Q Consensus 94 ~~--------------------~~~~~~~~~~-~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~ 152 (371)
.. .++.+...+. ..+.+|+.+.|.|.+.+.|. +.+.|++++..+.....+.+...
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~-p~v~W~~~~~~~~~~~~~~~~~~--- 169 (212)
T 2r15_A 94 QAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPP-PEVSWLKNEKALAQTDHCNLKFE--- 169 (212)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCEEEEBCCSEEEEETTCCEEEEEEEECSSC-CEEEEEETTEEECCCSSEEEEEE---
T ss_pred eeccchhhhccccCcccccccCCCcccccCCCcEEEccCCeEEEEEEEcCCCC-ceEEEEECCeECccCCCEEEEEc---
Confidence 41 1222333333 34489999999999999887 89999999998876543222111
Q ss_pred cCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeee
Q psy14542 153 REDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLT 214 (371)
Q Consensus 153 ~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~ 214 (371)
++ ....|.|.++...| .|.|+|.+.|. .|...... .|.|.
T Consensus 170 ------------~~-----~~~~L~i~~~~~~d-~G~Y~C~a~N~-~g~~~~~~---~l~V~ 209 (212)
T 2r15_A 170 ------------AG-----RTAYFTINGVSTAD-SGKYGLVVKNK-YGSETSDF---TVSVF 209 (212)
T ss_dssp ------------TT-----TEEEEEESSCCGGG-CEEEEEEEEET-TEEEEEEE---EEEEE
T ss_pred ------------CC-----CEEEEEEcCcchHH-CeEEEEEEEcC-CCcEEEEE---EEEEE
Confidence 00 11589999999999 99999999999 77766665 66665
No 163
>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A
Probab=99.88 E-value=6e-22 Score=168.86 Aligned_cols=211 Identities=15% Similarity=0.180 Sum_probs=131.8
Q ss_pred CcEEEEEEecCC-CCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCcccee
Q psy14542 112 HRIELHCRVSPK-RLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSY 190 (371)
Q Consensus 112 ~~v~l~C~~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y 190 (371)
+.+.|.|.+.+. |..+.|+|+++|..+........... .++.+... +.|.|.+...+| .|.|
T Consensus 25 ~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~--------------~~g~~~~~--s~l~i~~~~~~d-~g~Y 87 (323)
T 2wqr_A 25 PTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQ--------------EGELASTQ--SELTLSQKHWLS-DRTY 87 (323)
T ss_dssp SEEEEEEEEEEECCCCEEEEEEETTEECCGGGEEEEEEE--------------ETTEEEEE--EEEEEEHHHHHT-TCCE
T ss_pred CcEEEEEEEeCeECCCeEEEEEECCEEcccceecCCcCc--------------cCCcEEEE--EEEEEcHHHcCC-CCcE
Confidence 699999999886 33379999999998765422111110 02222222 568888888888 9999
Q ss_pred EEEeeccccceeeeeeccceeeeecchhccccce-eeeeeeeeeeecCCeEEEEEEeecC-CCC---ceEEEeCC-cccc
Q psy14542 191 QCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAK-MFEKHRILNVKKDESVILPCSAQGN-PLP---TIKWYKQD-SPVE 264 (371)
Q Consensus 191 ~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~-~~~~~~~~~~~~g~~~~l~C~~~~~-p~~---~v~W~~~~-~~~~ 264 (371)
+|.+.+. .+...... .+.+. .....|.+ ...+.... +..|+.+.|.|.+.+. |.+ .+.|++++ ..+.
T Consensus 88 ~C~a~n~-~~~~~~~~---~~~~~--~~~~~p~v~~~~p~~~~-v~~G~~v~L~C~~~g~~P~p~~~~i~W~k~~g~~~~ 160 (323)
T 2wqr_A 88 TCQVTYQ-GHTFEDST---KKCAD--SNPRGVSAYLSRPSPFD-LFIRKSPTITCLVVDLAPSKGTVQLTWSRASGKPVN 160 (323)
T ss_dssp EEEEEET-TEEEEEEE---CCCCC--SSGGGCEEEECCCCHHH-HHTSSCCEEEEEEEEECCCSSCCEEEEEETTCCCCC
T ss_pred EEEEEeC-CCCcceee---ecCCC--CCCCCCEEEEcCCCHHH-hccCCeEEEEEEEeccCCCCCceEEEEEECCCcccc
Confidence 9999987 55443332 21111 00022322 22333333 7789999999999885 556 89999975 4433
Q ss_pred cCCceE--------EecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEe----cCcccccccceEEEEeeeecccc
Q psy14542 265 ESDRIQ--------RIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYA----HGKYHMLSSGELIIHQVDEKNKR 332 (371)
Q Consensus 265 ~~~~~~--------~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~----~~p~~~~~~~~~~~~~~~~~~~~ 332 (371)
...... ...+.|.|.++..+|+|.|+|.|.|..+.......+.+. .+|. +. +..+..
T Consensus 161 ~~~~~~~~~~~g~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~---------v~-~~~~~~- 229 (323)
T 2wqr_A 161 HSTRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQCRVTHPHLPRALMRSTTKTSGPRAAPE---------VY-AFATPE- 229 (323)
T ss_dssp CCCCEEEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTSSSCEEEEECCCCSCCBCCE---------EE-EEECCC-
T ss_pred cccCCCccCCCCCEEEEEEEEECHHHccCCCCEEEEEECCCCCCCeeeEEEccCCCCCCCE---------EE-EeCCCh-
Confidence 221111 133479999999999999999999987554434444322 3444 33 122111
Q ss_pred ccccccccccceeeeeecCCeEEEeeeeecCCC-C-ccccC
Q psy14542 333 LLSAAKMFEKHRILNVKKDESVILPCSAQGNPL-P-TIKYR 371 (371)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~-p-~i~W~ 371 (371)
....|+.++|.|.+.|+++ + .|+|+
T Consensus 230 --------------~~~~g~~~~l~C~~~g~~p~~~~v~W~ 256 (323)
T 2wqr_A 230 --------------WPGSRDKRTLACLIQNFMPEDISVQWL 256 (323)
T ss_dssp --------------CTTCTTEEEEEEEEEEEBSSCCEEEEE
T ss_pred --------------HHhcCCcEEEEEEeeeeeCCCcEEEEE
Confidence 1123999999999999544 3 79995
No 164
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*
Probab=99.88 E-value=5.7e-22 Score=159.01 Aligned_cols=178 Identities=22% Similarity=0.349 Sum_probs=130.5
Q ss_pred cccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC---------CeeEE----EEccCCcCCCeEE
Q psy14542 8 KSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN---------SDEVL----VLDRVQREDAGMY 74 (371)
Q Consensus 8 ~~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~---------~~~~l----~i~~~~~~d~G~Y 74 (371)
..+|.+...|.. ..+.+|+++.|.|.+ .+.|.+.+.|++++..+... ....+ .|.+++.+|+|.|
T Consensus 7 ~~~P~i~~~p~~-~~v~~G~~v~L~C~~-~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y 84 (217)
T 2vr9_A 7 YQSPRIIEHPTD-LVVKKNEPATLNCKV-EGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEY 84 (217)
T ss_dssp CCCCEEEECCCC-EEECTTSCEEECCEE-ECSSCCEEEEEETTEECCCSSSSSSEEECTTSCEEESSCCBSSSCBCCEEE
T ss_pred cCCCEEecCCCc-eEEeCCCcEEEEEEc-CCCCCCeEEEEECCcCccCCCccceeEEecCCceEEEEEeccCCcccCceE
Confidence 457888888888 999999999999965 56678899999999887653 11222 6888999999999
Q ss_pred EEEEEcCCCCe-EEEEEEEEecceeeEecCCc-eeeecCCcEEEEEEe-cCCCCCceEEEeeCCEEeeeCCeeEEEEccc
Q psy14542 75 QCHVSADDDSA-QMSAQVILGGELVEIASSNQ-VVVDVGHRIELHCRV-SPKRLSSAKAWLKDGLVLRRNSDEVLVLDRV 151 (371)
Q Consensus 75 ~C~~~~~~~~~-~~~~~l~v~~~~~~~~~~~~-~~~~~g~~v~l~C~~-~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~ 151 (371)
+|.+.+..+.. ...+.|.|...++.+...+. ..+..|+.+.|.|.+ .+.|. +.+.|++++..+.........
T Consensus 85 ~C~~~n~~g~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~g~p~-~~v~W~~~g~~~~~~~~~~~~---- 159 (217)
T 2vr9_A 85 WCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALLECGPPKGIPE-PTLIWIKDGVPLDDLKAMSFG---- 159 (217)
T ss_dssp EEEEEETTEEEECCCEEEEECEECCSCSBCCCCEEECTTSCEEECCBCCCEESC-CEEEEEETTEEECCCCCC-------
T ss_pred EEEEecCCCccccccceEEEEEeCCCcEECCCccEEcCCCeEEEEEECCCCCCC-CeEEEEECCcCCCcccccccc----
Confidence 99999877654 23456666533444444333 345899999999999 67666 899999999988743211100
Q ss_pred CcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeee
Q psy14542 152 QREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSV 206 (371)
Q Consensus 152 ~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~ 206 (371)
...++....++.|.|.++..+| .|.|+|.+.|. .|....+.
T Consensus 160 ------------~~~~~~~~~~~~L~i~~~~~~d-~G~Y~C~a~N~-~G~~~~~~ 200 (217)
T 2vr9_A 160 ------------ASSRVRIVDGGNLLISNVEPID-EGNYKCIAQNL-VGTRESSY 200 (217)
T ss_dssp ------------CCCSEEEETTTEEEESSCCSTT-CEEEEEEEEET-TEEEECCC
T ss_pred ------------cCCcEEecCCCcEEEeeCCHHH-CeEEEEEEEcc-cceecccc
Confidence 0223444455789999999999 99999999999 77655544
No 165
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}
Probab=99.88 E-value=1.2e-21 Score=164.40 Aligned_cols=201 Identities=14% Similarity=0.239 Sum_probs=126.0
Q ss_pred eeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCC
Q psy14542 106 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESD 185 (371)
Q Consensus 106 ~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d 185 (371)
..+.+|++++|.|.+.+. ++|++++..+... .... . ++.+ .+.|.|.+++.+|
T Consensus 10 ~~v~~G~~v~L~C~~~~~-----v~W~~~~~~~~~~----~~~~-----~---------~~~~----~~~L~i~~~~~~D 62 (289)
T 3mjg_X 10 LVLNVSSTFVLTCSGSAP-----VVWERMSQEPPQE----MAKA-----Q---------DGTF----SSVLTLTNLTGLD 62 (289)
T ss_dssp EECCTTCCEEEEEEESSC-----CEEEBTTBCCSEE----EEEC-----T---------TSCE----EEEEEECSCCGGG
T ss_pred EEEeCCCcEEEEEeccce-----EEEECCCCCcccc----eecc-----C---------CCce----eEEEEEccCChhh
Confidence 344899999999999863 9999998876321 1000 0 0111 1579999999999
Q ss_pred ccceeEEEeeccccce-eeeeeccceeeeecchhccccceeeeee--eeeeeecCCeEEEEEEeecCCCCceEEEeCCcc
Q psy14542 186 RYRSYQCRGVNKLTGA-SLLSVNRGRLSLTENKRLLSAAKMFEKH--RILNVKKDESVILPCSAQGNPLPTIKWYKQDSP 262 (371)
Q Consensus 186 ~~g~y~C~~~~~~~~~-~~~~~~~~~l~v~~~~~~~~p~~~~~~~--~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~ 262 (371)
+|.|+|.+.|. .|. ...+. .+.|....+ ..+.+..... ... +..|+.+.|.|.+. .|.+.++|++++..
T Consensus 63 -~G~Y~C~a~n~-~g~~~~~~~---~~~v~v~~p-~~~~~~~~~~~~~~~-v~~G~~v~l~C~~~-~p~~~v~w~~~~~~ 134 (289)
T 3mjg_X 63 -TGEYFCTHNDS-RGLETDERK---RLYIFVPDP-TVGFLPNDAEELFIF-LTEITEITIPCRVT-DPQLVVTLHEKKGD 134 (289)
T ss_dssp -CEEEEEECCC-------CCCE---EEEEECCCT-TCCBCCCCHHHHEEE-ESSCCCEEECCCBS-CTTSCEEEEESSCC
T ss_pred -CEEEEEEEccc-CCCCcCcEE---eEEEEEECC-CcCcccCCCCcceEE-eecCCeEEEEeEcC-CCCceEEEEeCCCC
Confidence 99999999988 543 22222 334432211 1122211111 133 88999999999998 77889999987532
Q ss_pred cccCCceEEecceEEEeccCCCCCeEEEEEEEcCCCCc-eeEEEEEEec--CcccccccceEEEEeeeeccccccccccc
Q psy14542 263 VEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQD-KMQLFIQYAH--GKYHMLSSGELIIHQVDEKNKRLLSAAKM 339 (371)
Q Consensus 263 ~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~v~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (371)
......... ...+. ...|+|.|+|.|.|..+.. +..+.|.|.. +|. +. ..|..
T Consensus 135 ~~~~~~~~~-~~~~~----~~~d~G~Y~C~a~n~~~~~~s~~~~l~v~~~~~p~---------i~--~~~~~-------- 190 (289)
T 3mjg_X 135 VALPVPYDH-QRGFS----GIFEDRSYICKTTIGDREVDSDAYYVYRLQVSSIN---------VS--VNAVQ-------- 190 (289)
T ss_dssp SCCCCCEET-TTEEE----ECCCSSEEEEEEEETTEEEECCCEEEEECCCCCCC---------CE--EEESC--------
T ss_pred CccceeecC-CcCee----eeccCcEEEEEEEeCCceeeeeeEEEEecCCCCCC---------cE--EeCCc--------
Confidence 221111111 11121 3579999999999877654 4445666665 333 22 11111
Q ss_pred cccceeeeeecCCeEEEeeeeecCCCCccccC
Q psy14542 340 FEKHRILNVKKDESVILPCSAQGNPLPTIKYR 371 (371)
Q Consensus 340 ~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~ 371 (371)
..+.+|+.+.|.|.+.|.|.|.++|+
T Consensus 191 ------~~v~~G~~v~L~C~~~g~p~p~v~W~ 216 (289)
T 3mjg_X 191 ------TVVRQGENITLMCIVIGNEVVNFEWT 216 (289)
T ss_dssp ------SEEETTSCEEEEEEEESCSSBEEEEE
T ss_pred ------ceeEcCCCEEEEEEECCCCCcceEEE
Confidence 26889999999999999999999995
No 166
>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}
Probab=99.87 E-value=2.1e-21 Score=153.02 Aligned_cols=164 Identities=12% Similarity=0.171 Sum_probs=122.8
Q ss_pred ccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEee--------CCeeEEEEccCCcCCCeEEEEEEEc
Q psy14542 9 SSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRR--------NSDEVLVLDRVQREDAGMYQCHVSA 80 (371)
Q Consensus 9 ~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~--------~~~~~l~i~~~~~~d~G~Y~C~~~~ 80 (371)
++|.+...|.. .+.+|++++|.|.+. + +.+.+.|+|++..+.. .....|.|.+++.+|+|.|+|.+.|
T Consensus 4 ~~P~i~~~p~~--~v~~G~~v~L~C~~~-~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n 79 (196)
T 3p2t_A 4 PKPTLWAEPGS--VISWGNSVTIWCQGT-L-EAREYRLDKEESPAPWDRQNPLEPKNKARFSIPSMTEDYAGRYRCYYRS 79 (196)
T ss_dssp CCCEEEEESCS--EEETTCCEEEEEECC-T-TCCEEEEEETTSCSCSEEECCCSSSSEEEEEESSCCGGGCEEEEEEEEE
T ss_pred CCCEEEccCCC--cCCCCCcEEEEeeCC-C-CCCEEEEEECCCCCcccccccccCCceEEEEeccCCcccCceEEEEEeC
Confidence 57888888876 789999999999644 3 5678999998876542 1568899999999999999999998
Q ss_pred CCC--CeEEEEEEEEec--ceeeEecCCceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCC
Q psy14542 81 DDD--SAQMSAQVILGG--ELVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDA 156 (371)
Q Consensus 81 ~~~--~~~~~~~l~v~~--~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (371)
..+ ..+..+.|.|.. .++.+...+...+.+|+.++|.|.+.+. + ..+.|++++..+........
T Consensus 80 ~~g~~~~s~~~~l~V~~~~~~p~~~~~~~~~v~~G~~v~L~C~~~~~-~-~~~~w~k~g~~~~~~~~~~~---------- 147 (196)
T 3p2t_A 80 PVGWSQPSDPLELVMTGAYSKPTLSALPSPLVTSGKSVTLLCQSRSP-M-DTFLLCKERAAHPLLCLRSE---------- 147 (196)
T ss_dssp TTEEBCCCCCEEEEEECSSCCCEEEEESCSEECTTCCEEEEEEEEEE-E-EEEEEEETTCCCGGGSEEEE----------
T ss_pred CCcccCCCccEEEEecCCCCCCEEEeCCcceecCCCeEEEEEecCCC-C-CEEEEEeCCCcccceeeccc----------
Confidence 876 335556777753 3455555555566899999999999874 3 58999999876643321100
Q ss_pred eeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccc
Q psy14542 157 GMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTG 200 (371)
Q Consensus 157 g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~ 200 (371)
.........|.|.+++.+| .|.|+|.+.|. .+
T Consensus 148 ----------~~~~~~~~~L~i~~v~~~d-~G~Y~C~a~n~-~~ 179 (196)
T 3p2t_A 148 ----------HGAQQHQAEFPMSPVTSVH-GGTYRCFSSHG-FS 179 (196)
T ss_dssp ----------EEEEEEEEEEEECSCCGGG-CEEEEEEEECG-GG
T ss_pred ----------ccccCcceEEEeCCCcccC-CCeEEEEEEcC-CC
Confidence 0011123679999999999 99999999998 44
No 167
>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*
Probab=99.87 E-value=7.6e-22 Score=157.85 Aligned_cols=159 Identities=16% Similarity=0.217 Sum_probs=118.4
Q ss_pred cccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEee--------CCee--EEEEccCCcCCCeEEEEE
Q psy14542 8 KSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRR--------NSDE--VLVLDRVQREDAGMYQCH 77 (371)
Q Consensus 8 ~~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~--------~~~~--~l~i~~~~~~d~G~Y~C~ 77 (371)
.++|.|...|.. .+.+|++++|.|.+. + +.+.|.|+|+|..+.. .... .|.|.+++.+|+|.|+|.
T Consensus 7 ~~~P~i~~~p~~--~v~~G~~vtL~C~~~-~-~~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 82 (218)
T 1uct_A 7 FPMPFISAKSSP--VIPLDGSVKIQCQAI-R-EAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQCQ 82 (218)
T ss_dssp SCCCCEEESSCS--EEETTCCEEEEECCC-T-TCSEEEEEEEETTEEEECSEECC----CCCEEEECSCCGGGCEEEEEE
T ss_pred CCCCEEEecCCC--ccCCCCCEEEEEEcC-C-CCCEEEEEECCCcccccccccCCCCcceeeEEEEcccccccCEEEEEE
Confidence 467889888874 789999999999543 3 5778999998765431 1344 899999999999999999
Q ss_pred EEcCCCCe--EEEEEEEEec--ceeeEecCCceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCc
Q psy14542 78 VSADDDSA--QMSAQVILGG--ELVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQR 153 (371)
Q Consensus 78 ~~~~~~~~--~~~~~l~v~~--~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~ 153 (371)
+.+..+.. +..+.|.|.+ .+|.+...+...+.+|+.++|.|...+.+. +.+.|+|+|..+....
T Consensus 83 a~n~~~~~~~s~~~~l~V~~~~~~P~i~~~p~~~v~~G~~v~L~C~~~~~~~-~~~~W~k~g~~~~~~~----------- 150 (218)
T 1uct_A 83 YRIGHYRFRYSDTLELVVTGLYGKPFLSADRGLVLMPGENISLTCSSAHIPF-DRFSLAKEGELSLPQH----------- 150 (218)
T ss_dssp EEETTTEEEECCCEEEEEECSSCCCEEEESSCSEECTTCCCEEEEECSSSCC-SEEEEEETTCSSCCSE-----------
T ss_pred EEcCCCceeecCCEEEEEcCcccCCEEEeCCCCccCCCCCEEEEEeCCCCCC-CEEEEEECCCcccccc-----------
Confidence 99875422 3446777763 345565555556689999999997766665 7999999987554310
Q ss_pred CCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeecc
Q psy14542 154 EDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNK 197 (371)
Q Consensus 154 ~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~ 197 (371)
.....+..|.|.+++.+| +|.|+|.+.+.
T Consensus 151 --------------~~~~~~~~L~I~~v~~~D-~G~Y~C~a~n~ 179 (218)
T 1uct_A 151 --------------QSGEHPANFSLGPVDLNV-SGIYRCYGWYN 179 (218)
T ss_dssp --------------EECSSSEEEECCSCCGGG-CEEEEEEEECT
T ss_pred --------------cCCCccCEEEEccCCccc-CEEEEEEEEcC
Confidence 000122679999999999 99999999875
No 168
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G
Probab=99.87 E-value=2.7e-22 Score=159.86 Aligned_cols=181 Identities=18% Similarity=0.274 Sum_probs=125.7
Q ss_pred eeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCC
Q psy14542 106 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESD 185 (371)
Q Consensus 106 ~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d 185 (371)
..+.+|+.+.|.|.+.+.+. +.+.|++++..+...... -....... .++..... ..|.|.+++.+|
T Consensus 14 ~~v~~G~~v~L~C~~~~~p~-~~v~W~~~~~~~~~~~~~---~~~~~~~~---------~~r~~~~~-~~L~i~~~~~~d 79 (209)
T 1nbq_A 14 VRIPENNPVKLSCAYSGFSS-PRVEWKFDQGDTTRLVCY---NNKITASY---------EDRVTFLP-TGITFKSVTRED 79 (209)
T ss_dssp CCEETTCCCEEECEEESCSS-EEEEEEEEETTEEEESEE---TTEECTTT---------TTTCEEET-TEEECSCCCTTS
T ss_pred eEEEcCCCEEEEEEEeCCCC-cEEEEEEcCCceeEEEEe---cCccCccc---------cCceEeec-cEEEEeeCCHHH
Confidence 34489999999999998776 899999976543211000 00000000 12333332 789999999999
Q ss_pred ccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEe-ecCCCCceEEEeCCcccc
Q psy14542 186 RYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSA-QGNPLPTIKWYKQDSPVE 264 (371)
Q Consensus 186 ~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~v~W~~~~~~~~ 264 (371)
.|.|+|.+.+. .+....+. ...+.|. .+|.+........ +..|+.+.|.|.+ .+.|.+.+.|++++..+.
T Consensus 80 -~G~Y~C~~~~~-~g~~~~~~-~~~l~V~-----~~p~~~~~~~~~~-~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~~~ 150 (209)
T 1nbq_A 80 -TGTYTCMVSEE-GGNSYGEV-KVKLIVL-----VPPSKPTVNIPSS-ATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMP 150 (209)
T ss_dssp -CSEEEEEEEET-TSSCEECC-EEECCEE-----BCCCCCCCCCBSE-EETTSCEEECCCCCSCBSCCEEEEEETTCCCC
T ss_pred -CcEEEEEEecC-CCCccceE-EEEEEEe-----cCCcCCCcccccc-eecCCEEEEEEeCCCCCCCceeEEEECCeeCC
Confidence 99999999987 44222221 1155665 4555444444444 8899999999997 889999999999998876
Q ss_pred cCCce---------E--EecceEEEeccCCCCCeEEEEEEEcCCCCc--eeEEEEEEe
Q psy14542 265 ESDRI---------Q--RIGSSLSISHVEESDSGVWNCVANNSEGQD--KMQLFIQYA 309 (371)
Q Consensus 265 ~~~~~---------~--~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~--~~~~~l~v~ 309 (371)
...+. . ...+.|.|.++..+|+|.|+|.|.|..|.. +..+.|.|.
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~l~V~ 208 (209)
T 1nbq_A 151 TNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRMEAV 208 (209)
T ss_dssp SCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCEEEEEECSSSCCEECCCBCCEEE
T ss_pred CccccceeeeccceEEcCCcceEEEEeccccCCeEEEEEEeCCcCcccccccEEEEEe
Confidence 54321 1 135689999999999999999999999998 445555553
No 169
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Probab=99.87 E-value=1.2e-21 Score=158.56 Aligned_cols=183 Identities=18% Similarity=0.282 Sum_probs=132.7
Q ss_pred cceEEEeC----CCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC----------CeeEEEEccCCcCCCeEEE
Q psy14542 10 SLSIEMSP----SGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN----------SDEVLVLDRVQREDAGMYQ 75 (371)
Q Consensus 10 ~~~~~~~p----~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~----------~~~~l~i~~~~~~d~G~Y~ 75 (371)
+|.+...+ .. ..+.+|+++.|.|.+ .+.|.+.+.|++++..+... ...+|.|.+++.+|+|.|+
T Consensus 15 ~P~~~~~~~~~~~~-~~v~~G~~v~L~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~ 92 (231)
T 3ojm_B 15 APYWTNTEKMEKRL-HAVPAANTVKFRCPA-GGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYT 92 (231)
T ss_dssp EEEESCGGGGCCSC-EEEETTSCEEEECCE-EEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEE
T ss_pred CCccccccccCcee-EEEccCCCEEEEEec-ccCCCCeEEEEECCccccccccccceeeecCcceEEEecCCcccCEEEE
Confidence 45554444 45 889999999999954 45678899999999987643 3347999999999999999
Q ss_pred EEEEcCCCCeEEEEEEEEecc---eeeEec--CCceeeecCCcEEEEEEecCCCCCceEEEee----CCEEeeeCCeeEE
Q psy14542 76 CHVSADDDSAQMSAQVILGGE---LVEIAS--SNQVVVDVGHRIELHCRVSPKRLSSAKAWLK----DGLVLRRNSDEVL 146 (371)
Q Consensus 76 C~~~~~~~~~~~~~~l~v~~~---~~~~~~--~~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~----~~~~~~~~~~~~~ 146 (371)
|.+.+..+.....+.|.|... ++.+.. .....+..|+.+.|.|.+.+.+. +.+.|++ ++..+........
T Consensus 93 C~~~n~~~~~~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~-p~v~W~~~~~~~g~~~~~~~~~~~ 171 (231)
T 3ojm_B 93 CVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQ-PHIQWIKHVEKNGSKYGPDGLPYL 171 (231)
T ss_dssp EEEEETTEEEEEEEEEEEECCCCCCCEECTTCSCCEEEETTCCEEEECCEECSSC-CEEEEEEECCBTTBSBCTTSCBCE
T ss_pred EEEecccCcccccEEEEEEcCCCCCCceeeccCCceEEEeCCcEEEEEEEecCCC-CEEEEEECCCCCCccccCCCcceE
Confidence 999998887777888888732 223332 22344589999999999998887 7999999 6665543321111
Q ss_pred EEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeee
Q psy14542 147 VLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLT 214 (371)
Q Consensus 147 ~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~ 214 (371)
.... ...........|.|.++...| .|.|+|.+.|. .|...... .|.|.
T Consensus 172 ~~~~--------------~~~~~~~~~~~L~i~~~~~~d-~G~Y~C~a~n~-~g~~~~~~---~l~V~ 220 (231)
T 3ojm_B 172 KVLK--------------HSGINSSNAEVLALFNVTEAD-AGEYICKVSNY-IGQANQSA---WLTVL 220 (231)
T ss_dssp EEEE--------------ECSTTCSCTTEEEECSCCGGG-CEEEEEEEEET-TEEEEEEE---EEEEE
T ss_pred eEec--------------ccccccCCccEEEEecCCHHH-CeEEEEEEEec-cceEeeEE---EEEEe
Confidence 1000 011111223579999999999 99999999999 77776666 77777
No 170
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A
Probab=99.87 E-value=2.1e-21 Score=149.44 Aligned_cols=162 Identities=15% Similarity=0.297 Sum_probs=120.2
Q ss_pred eeEecCCc-eeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceE
Q psy14542 98 VEIASSNQ-VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGEL 176 (371)
Q Consensus 98 ~~~~~~~~-~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l 176 (371)
|.+...+. ..+.+|+.+.|.|.+.+.+....+.|++++..+.... ..+
T Consensus 5 p~i~~~p~~~~v~~G~~v~l~C~~~~~p~~~~~~W~~~g~~~~~~~-------------------------------~~~ 53 (170)
T 3ry4_A 5 AVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHT-------------------------------QPS 53 (170)
T ss_dssp CEEEEESCCSEEETTCEEEEEEESCCCSSSSCEEEEETTEECTTCC-------------------------------SSE
T ss_pred CEEEeCCCCeEEECCCcEEEEEEecCCCCcceEEEEECCeEcccCc-------------------------------cce
Confidence 34444444 3468999999999999886447999999998776431 456
Q ss_pred EEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEee-cCCCCceE
Q psy14542 177 IIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQ-GNPLPTIK 255 (371)
Q Consensus 177 ~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~-~~p~~~v~ 255 (371)
.+.+++..| .|.|+|.+.+. .. .... .+.|. .++.+.. ..... +..|+.+.|.|.+. +.|.+.+.
T Consensus 54 ~~~~~~~~d-~G~Y~C~~~~~-~~--s~~~---~l~v~-----~~~~~~~-~~~~~-~~~g~~~~l~C~~~~~~p~~~~~ 119 (170)
T 3ry4_A 54 YRFKANNND-SGEYTCQTGQT-SL--SDPV---HLTVL-----FEWLVLQ-TPHLE-FQEGETIMLRCHSWKDKPLVKVT 119 (170)
T ss_dssp EEEECCGGG-CEEEEEEETTS-BC--CCCE---EEEEE-----CCSEEEE-CSCSE-ECTTCCEEEEEEEGGGCCEEEEE
T ss_pred EEEeccccc-CeEEEEEEeCC-Cc--eEeE---EEEEE-----CCceEec-CCCce-eecCCeEEEEEECCCCCCCceEE
Confidence 778899999 99999999875 32 2233 66666 3333332 22334 78999999999995 56668999
Q ss_pred EEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCCC-ceeEEEEEE
Q psy14542 256 WYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQ-DKMQLFIQY 308 (371)
Q Consensus 256 W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~-~~~~~~l~v 308 (371)
|++++..+.... .++.|.|.++..+|+|.|+|.|.|..|. .+..+.|.|
T Consensus 120 W~~~g~~~~~~~----~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V 169 (170)
T 3ry4_A 120 FFQNGKSQKFSH----LDPTFSIPQANHSHSGDYHCTGNIGYTLFSSKPVTITV 169 (170)
T ss_dssp EEETTEEEEEES----SCCEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEE
T ss_pred EEECCeEccccC----CCCeEEEEeccccCCEEEEEEEEeCcCccccccEEEEE
Confidence 999998765322 3568999999999999999999999986 455666665
No 171
>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.87 E-value=1.3e-21 Score=160.04 Aligned_cols=220 Identities=12% Similarity=0.093 Sum_probs=124.2
Q ss_pred ceeeEecCCceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccce
Q psy14542 96 ELVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGE 175 (371)
Q Consensus 96 ~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~ 175 (371)
.+|.+...+...+.+|++++|.|.+... . ..+.|+|++..+..... .... .....+..
T Consensus 6 ~kP~i~~~P~~~V~~G~~VtL~C~~~~~-~-~~~~W~k~g~~~~~~~~----~~~~----------------~~~~~~~~ 63 (257)
T 1b6u_A 6 RKPSLLAHPGPLVKSEETVILQCWSDVR-F-QHFLLHREGKFKDTLHL----IGEH----------------HDGVSKAN 63 (257)
T ss_dssp CCCEECCBSCSEEESSCCEEEEEEESSC-C-SEEEEEEESTTCEEEEE----ECBC----------------CTTCEEEE
T ss_pred CCCEEEEcCCCEecCCCCEEEEEecCCC-C-cEEEEEECCCCCCccee----eeec----------------cCCCceEE
Confidence 4566766666666899999999999753 3 68999998864432100 0000 00012267
Q ss_pred EEEEEeecCCccceeEEEeeccccc--eeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecCCCCc
Q psy14542 176 LIIHQVDESDRYRSYQCRGVNKLTG--ASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPT 253 (371)
Q Consensus 176 l~i~~~~~~d~~g~y~C~~~~~~~~--~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~ 253 (371)
|.|.+++.+| +|.|+|.+.+...+ ....+. ...|.|... ..+|.+...+. .. +.+|+.++|.|.+.+.+ +.
T Consensus 64 L~I~~v~~~D-sG~Y~C~a~~~~~~~~~s~~S~-~~~L~V~~~--~~~P~l~~~p~-~~-V~~G~~vtL~C~~~~~~-~~ 136 (257)
T 1b6u_A 64 FSIGPMMQDL-AGTYRCYGSVTHSPYQLSAPSD-PLDIVITGL--YEKPSLSAQPG-PT-VLAGESVTLSCSSRSSY-DM 136 (257)
T ss_dssp EEECSCCTTT-CEEEEEEEECSSCTTSCCCCCC-CEEEEEECS--SCCCEEECSSC-TT-CBTTCEEEEEEECSSCC-SE
T ss_pred EEeecCCccc-CEEEEEeEeccCCCccccccCC-CEEEecccC--CCCcceEccCC-Cc-cCCCCEEEEEEeCCCCC-cE
Confidence 9999999999 99999999754111 111111 114555531 13455554444 23 89999999999988654 68
Q ss_pred eEEEeCCcccccCCceE-----EecceEEEeccCCCCCeEEEEEEEcCCC-----CceeEEEEEEecCcccccccceEEE
Q psy14542 254 IKWYKQDSPVEESDRIQ-----RIGSSLSISHVEESDSGVWNCVANNSEG-----QDKMQLFIQYAHGKYHMLSSGELII 323 (371)
Q Consensus 254 v~W~~~~~~~~~~~~~~-----~~~~~l~i~~~~~~d~G~Y~C~a~n~~g-----~~~~~~~l~v~~~p~~~~~~~~~~~ 323 (371)
|.|+|+|..+....+.. ..++.|.|.++. |+|.|+|.|.|... ..+..+.|.|..+|. +
T Consensus 137 ~~w~k~g~~~~~~~~~~~~~~~~~~~~l~I~~v~--D~G~Y~C~a~~~~~p~~~s~~S~pl~L~V~g~p~---------~ 205 (257)
T 1b6u_A 137 YHLSREGEAHERRFSAGPKVNGTFQADFPLGPAT--HGGTYRCFGSFRDSPYEWSNSSDPLLVSVTGNPS---------N 205 (257)
T ss_dssp EEEEETTSSCEECCBCBCCSSSCCBEEEEEEECC--SCEEEEEEEECSSCTTBBCCCCCCEEECCBCCC-----------
T ss_pred EEEEECCcccCcccccccccCCceeEEEEecccc--cCEEEEEEEEcCCCCcccccCCCCEEEEEeccCC---------C
Confidence 99999998765432111 125689999998 99999999997632 345668888888877 2
Q ss_pred EeeeeccccccccccccccceeeeeecCCeEEEeeeeecCCCCccccC
Q psy14542 324 HQVDEKNKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKYR 371 (371)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~ 371 (371)
. .|... ......|..+.|.|.+ |.+.+.|.|.
T Consensus 206 ~---~p~~~------------~~~~~~g~~~~l~~~~-~~~~~~~~~~ 237 (257)
T 1b6u_A 206 S---WPSPT------------EPSSETGNPRHLHAAA-EQKLISEEDL 237 (257)
T ss_dssp ------------------------------------------------
T ss_pred C---CCCCc------------ccCccCCCeEEEEEEE-cchHHHHHHh
Confidence 2 11111 1134568889998765 5666677763
No 172
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Probab=99.87 E-value=4.8e-21 Score=149.37 Aligned_cols=169 Identities=18% Similarity=0.266 Sum_probs=122.8
Q ss_pred eeecCCcEEEEEEecCCCCCceEEEeeCCEE--eeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEec------cceEEE
Q psy14542 107 VVDVGHRIELHCRVSPKRLSSAKAWLKDGLV--LRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLS------SGELII 178 (371)
Q Consensus 107 ~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~--~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~------~~~l~i 178 (371)
.+.+|++++|.|.+.+.+. +.+.|++++.. +...... ..... ... .+++.... ...|.|
T Consensus 6 ~~~~G~~v~L~C~~~~~~~-~~i~W~~~~~~~~~~~~~~~-~~~~~--~~~---------~~r~~~~~~~~~~~~~~L~i 72 (184)
T 2ny1_B 6 LGKKGDTVELTCTASQKKS-IQFHWKNSNQIKILGNQGSF-LTKGP--SKL---------NDRADSRRSLWDQGNFPLII 72 (184)
T ss_dssp EEETTSCEEECCBCSSSSC-CCEEEEETTCCEEEEEETTE-EEECS--CTT---------GGGEECCGGGGGGTBCCEEE
T ss_pred EEeCCCCEEEEEEEcCCCc-eEEEEEeCCccceEEecCce-EecCC--hhh---------CCccccccccccCCeEEEEE
Confidence 4489999999999987776 89999998863 2211111 11000 000 11222221 245999
Q ss_pred EEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEe
Q psy14542 179 HQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYK 258 (371)
Q Consensus 179 ~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~ 258 (371)
.+++.+| +|.|+|.+.+. .+ .. .+.|.. . .. +.... +..|+.+.|.|.+.+.|.+.+.|++
T Consensus 73 ~~v~~~D-~G~Y~C~~~~~-~~----~~---~l~V~~-----~---~~-~~~~~-v~~g~~~~l~C~~~~~p~~~v~W~~ 133 (184)
T 2ny1_B 73 KNLKIED-SDTYICEVEDQ-KE----EV---QLLVFG-----L---TA-NSDTH-LLQGQSLTLTLESPPGSSPSVQCRS 133 (184)
T ss_dssp CSCCGGG-CEEEEEEETTE-EE----EE---EEEEEE-----E---EE-SSCSE-EETTCCEEEEEECCTTCCCEEEEEC
T ss_pred ecCCHHH-CEEEEEEEEcC-CC----cE---EEEEEE-----e---cC-CCCce-eecCCCEEEEEEcCCCCCCEEEEEe
Confidence 9999999 99999999987 43 22 455541 1 11 12223 8899999999999999999999999
Q ss_pred CCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEecCcc
Q psy14542 259 QDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKY 313 (371)
Q Consensus 259 ~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~ 313 (371)
++..+ ....+.|.|.++..+|+|.|+|.|.|..+.....+.|.|...|.
T Consensus 134 ~~~~~------~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~~~~l~V~~~p~ 182 (184)
T 2ny1_B 134 PRGKN------IQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQK 182 (184)
T ss_dssp TTSCE------EEESSEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCC
T ss_pred CCCcc------ccCceEEEEecCCcCCCeEEEEEEEECCceEEEEEEEEEEecCC
Confidence 87654 34567899999999999999999999999999999999988776
No 173
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}
Probab=99.87 E-value=4e-21 Score=156.70 Aligned_cols=174 Identities=21% Similarity=0.340 Sum_probs=127.6
Q ss_pred EEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC----------CeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEEE
Q psy14542 21 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN----------SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQ 90 (371)
Q Consensus 21 ~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~----------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~ 90 (371)
+.+.+|+++.|.|.+ .+.|.+.+.|++++..+... ...+|.|.+++.+|+|.|+|.+.+..+.....+.
T Consensus 25 ~~v~~G~~v~L~C~~-~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~~~ 103 (241)
T 3grw_A 25 LAVPAANTVRFRCPA-AGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYT 103 (241)
T ss_dssp EEEETTSEEEEECCE-ECSSCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred eEEcCCCeEEEEEEe-cCCCCceeEEEECCcccCCCCcccceeeeccceEEEEEeCCcccCEEEEEEEeecCCceEEEEE
Confidence 789999999999955 46678899999999887643 4458999999999999999999998887777888
Q ss_pred EEEecc---eeeEec--CCceeeecCCcEEEEEEecCCCCCceEEEee----CCEEeeeCCeeEEEEcccCcCCCeeEEE
Q psy14542 91 VILGGE---LVEIAS--SNQVVVDVGHRIELHCRVSPKRLSSAKAWLK----DGLVLRRNSDEVLVLDRVQREDAGMYQC 161 (371)
Q Consensus 91 l~v~~~---~~~~~~--~~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~----~~~~~~~~~~~~~~~~~~~~~~~g~y~~ 161 (371)
|.|... ++.+.. .....+.+|+.+.|.|.+.+.+. +.+.|++ ++..+...............
T Consensus 104 l~V~~~~~~~~~~~~~~~~~~~~~~g~~v~L~C~~~~~p~-p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~-------- 174 (241)
T 3grw_A 104 LDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQ-PHIQWLKHVEVNGSKVGPDGTPYVTVLKSWI-------- 174 (241)
T ss_dssp EEEECCCCCCCEEEECTTCSEECCTTCCEEEEEEEECSSC-CEEEEEEECCSSSCSSCTTTCCCEEEEEEEE--------
T ss_pred EEEeccCCCCceeecCCCccceecCCCEEEEEEEEecCCC-CEEEEEEcccCCCcccCCCCceeeeeeeEee--------
Confidence 888632 222222 22334488999999999998887 7999999 66655443321111100000
Q ss_pred EEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeee
Q psy14542 162 HIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLT 214 (371)
Q Consensus 162 ~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~ 214 (371)
.........|.|.++..+| .|.|+|.+.|. .|...... .|.|.
T Consensus 175 -----~~~~~~~~~L~i~~~~~~d-~G~Y~C~a~N~-~g~~~~~~---~l~V~ 217 (241)
T 3grw_A 175 -----SESVEADVRLRLANVSERD-GGEYLCRATNF-IGVAEKAF---WLSVH 217 (241)
T ss_dssp -----CSBSEEEEEEEECSCCGGG-CEEEEEEEECS-SCEEEEEE---EEEC-
T ss_pred -----eeecCCceEEEECcCCccc-CcEEEEEEecC-cceEEEEE---EEEec
Confidence 0001123679999999999 99999999998 78777776 77777
No 174
>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.87 E-value=9.2e-21 Score=153.78 Aligned_cols=159 Identities=14% Similarity=0.170 Sum_probs=120.0
Q ss_pred ecccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEee--------CCeeEEEEccCCcCCCeEEEEEE
Q psy14542 7 VKSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRR--------NSDEVLVLDRVQREDAGMYQCHV 78 (371)
Q Consensus 7 v~~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~--------~~~~~l~i~~~~~~d~G~Y~C~~ 78 (371)
..++|.|.+.|.. .+.+|++++|.|... .+...+.|+|++..+.. .....|.|.+++.+|+|.|+|.+
T Consensus 4 ~~~kP~i~~~P~~--~v~~G~~VtL~C~~~--~~~~~~~w~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~ 79 (242)
T 1p6f_A 4 TLPKPFIWAEPHF--MVPKEKQVTICCQGN--YGAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIY 79 (242)
T ss_dssp CCCCCEEEEESCS--EEETTCCEEEEEECC--TTCCEEEEEETTEEEEEECCSSCTTCCEEEEEECSCCGGGCEEEEEEE
T ss_pred CCCCCEEEeeCCC--ccCCCCcEEEEEeeC--CCCcEEEEEECCCccccccccccCCcceeEEEecCCCcccCeEEEEEE
Confidence 3567889999986 799999999999653 24567999999987642 15678999999999999999999
Q ss_pred EcCCC--CeEEEEEEEEec--ceeeEecCCceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcC
Q psy14542 79 SADDD--SAQMSAQVILGG--ELVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQRE 154 (371)
Q Consensus 79 ~~~~~--~~~~~~~l~v~~--~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~ 154 (371)
.+..+ ..+..+.|.|.+ ..|.+...+...+.+|++++|.|.+.+.+ ..+.|+|+|..+.... .
T Consensus 80 ~~~~~~s~~S~~~~L~V~~~~~~P~i~~~p~~~v~~G~~vtL~C~~~~~~--~~~~w~k~g~~~~~~~----~------- 146 (242)
T 1p6f_A 80 RVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGEKVTFYCRLDTAT--SMFLLLKEGRSSHVQR----G------- 146 (242)
T ss_dssp EETTEECCCCCCEEEEEECCSCCCEEEEESCSEEETTCEEEEEEECTTSC--SEEEEEECSSSCEEEE----E-------
T ss_pred ecCCccccCCcceEEEeecccCCCceEccCCCccCCCCcEEEEEecCCCC--CEEEEEECCCccCccc----c-------
Confidence 87532 234556777763 24556555555668999999999987653 5999999987554310 0
Q ss_pred CCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeecc
Q psy14542 155 DAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNK 197 (371)
Q Consensus 155 ~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~ 197 (371)
....+..|.|.+++.+| +|.|+|.+.+.
T Consensus 147 --------------~~~~~~~l~I~~v~~~d-~G~Y~C~a~n~ 174 (242)
T 1p6f_A 147 --------------YGKVQAEFPLGPVTTAH-RGTYRCFGSYN 174 (242)
T ss_dssp --------------ECSSEEEEEEEECCGGG-CEEEEEEEEEE
T ss_pred --------------CCCceEEEEeCCCcccc-CEEEEEEEECC
Confidence 00112689999999999 99999999886
No 175
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B
Probab=99.87 E-value=5.3e-21 Score=151.54 Aligned_cols=171 Identities=18% Similarity=0.252 Sum_probs=117.7
Q ss_pred eeeecCCcEEEEEEecCCCC----CceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEe------ccce
Q psy14542 106 VVVDVGHRIELHCRVSPKRL----SSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHML------SSGE 175 (371)
Q Consensus 106 ~~~~~g~~v~l~C~~~~~~~----~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~------~~~~ 175 (371)
..+.+|+.+.|.|.+.+.+. .+.+.|++.+....... ++..+. .+..
T Consensus 12 v~v~~G~~v~L~C~~~~~p~~~~~~~~v~W~k~~~~~~~~~-----------------------~r~~~~~~~~~~~~~~ 68 (202)
T 3bp6_B 12 YTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQS-----------------------ERATLLEEQLPLGKAL 68 (202)
T ss_dssp EEEETTSCEEEEEEECTTC---CTTEEEEEEECC--CCCBC-----------------------SSCEECGGGGGGTEEE
T ss_pred EEEeCCCcEEEEEEecCCCCCCccceEEEEEcCCCcccccC-----------------------CceEEeeccccCCeeE
Confidence 34589999999999987652 26899999443332211 111111 1257
Q ss_pred EEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecCCCCceE
Q psy14542 176 LIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIK 255 (371)
Q Consensus 176 l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~ 255 (371)
|.|.+++.+| +|.|+|.+.+. .+...... .|.|.... ..|.+.. .. +..|+.+.|.|.+.|.|.|.+.
T Consensus 69 L~I~~v~~~D-~G~Y~C~~~~~-~~~~~~~~---~l~V~~~~--~~p~~~~----~~-~~~g~~v~l~C~~~g~P~p~v~ 136 (202)
T 3bp6_B 69 FHIPSVQVRD-SGQYRCLVICG-AAWDYKYL---TVKVKASY--MRIDTRI----LE-VPGTGEVQLTCQARGYPLAEVS 136 (202)
T ss_dssp EEECSCCGGG-CEEEEEEEEET-TEEEEEEE---EEEEEBCC--CCEEEEE----EE-CTTTCCEEEEEEEEEBSCCEEE
T ss_pred EEECCCCHHH-CcEEEEEEEeC-CCcceEEE---EEEecCCC--CcccEEE----Ee-cCCCCeEEEEEEccccCCceEE
Confidence 9999999999 99999999988 66555555 66666321 1222221 12 6789999999999999999999
Q ss_pred EEeCCcccccCCceEEec---ceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEecCc
Q psy14542 256 WYKQDSPVEESDRIQRIG---SSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGK 312 (371)
Q Consensus 256 W~~~~~~~~~~~~~~~~~---~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p 312 (371)
|++++..+..... ...+ ..+.+..+..+|.|.|+|.|.|..|.....+.|.|.++.
T Consensus 137 W~~~~~~~~~~~~-~~~~~~~~~~~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~v~~~~ 195 (202)
T 3bp6_B 137 WQNVSVPANTSHI-RTPEGLYQVTSVLRLKPQPSRNFSCMFWNAHMKELTSAIIDPLSRM 195 (202)
T ss_dssp ETTCCSCCEEEEE-ECTTSCEEEEEEEEECCCTTCCEEEEEEETTTTEEEEEEECC----
T ss_pred EEeCCCCccCcee-eCCCCCEEEEEEEEEEcCCCCEEEEEEEcCCcccccEEEEEecCcC
Confidence 9998876542211 1111 346677889999999999999999999888888776543
No 176
>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4
Probab=99.87 E-value=1.6e-21 Score=155.75 Aligned_cols=172 Identities=24% Similarity=0.340 Sum_probs=121.1
Q ss_pred ceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEee----------C-------CeeEEEEccCCcCCCeE
Q psy14542 11 LSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRR----------N-------SDEVLVLDRVQREDAGM 73 (371)
Q Consensus 11 ~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~----------~-------~~~~l~i~~~~~~d~G~ 73 (371)
+.+...|.. +.+.+|+++.|.|.+. +.|.+.+.|++++..+.. . ...+|.|.+++.+|+|.
T Consensus 2 ~~v~~~~~~-~~v~~G~~v~L~C~~~-~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~L~i~~v~~~D~G~ 79 (212)
T 1f97_A 2 GSVYTAQSD-VQVPENESIKLTCTYS-GFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNGE 79 (212)
T ss_dssp CEEECSCSE-EEEETTCCEEEECEEE-SCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEETTEEEESCCCGGGCEE
T ss_pred ceEEecCCC-eEEEcCCCEEEEeEeC-CCCCcEEEEEECCCceeeEEecCCcccccccCcEEeeceeEEEcccCcccCeE
Confidence 456666666 8899999999999654 567889999997654211 0 33789999999999999
Q ss_pred EEEEEEcCCC--CeEEEEEEEEecceeeEecCCceeeecCCcEEEEEE-ecCCCCCceEEEeeCCE-EeeeCCeeEEEEc
Q psy14542 74 YQCHVSADDD--SAQMSAQVILGGELVEIASSNQVVVDVGHRIELHCR-VSPKRLSSAKAWLKDGL-VLRRNSDEVLVLD 149 (371)
Q Consensus 74 Y~C~~~~~~~--~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~v~l~C~-~~~~~~~~~v~W~~~~~-~~~~~~~~~~~~~ 149 (371)
|+|.+.+..+ .....+.|.|...+..........+.+|+.+.|.|. +.+.|. +.+.|++++. .+........
T Consensus 80 Y~C~~~~~~g~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~-~~i~W~~~~~~~l~~~~~~~~--- 155 (212)
T 1f97_A 80 YTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGNRAVLTCSEHDGSPP-SEYSWFKDGISMLTADAKKTR--- 155 (212)
T ss_dssp EEEEEEETTSSSEEEEEEEEEEEBCCCCCEEECCSEEETTSCEEEEEECSCCBSC-CEEEEEETTEESBC-----CB---
T ss_pred EEEEEEccCCCcccEEEEEEEEEcCCCCcccCCccccCCCCeEEEEEEcccCcCC-CEEEEEeCCcccccccccccc---
Confidence 9999998766 346677888873332222222344589999999999 577676 8999999998 6654321100
Q ss_pred ccCcCCCeeEEEEEeCCceeE-eccceEEEEEeecCCccceeEEEeecccccee
Q psy14542 150 RVQREDAGMYQCHIEDGKYHM-LSSGELIIHQVDESDRYRSYQCRGVNKLTGAS 202 (371)
Q Consensus 150 ~~~~~~~g~y~~~~~~~~~~~-~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~ 202 (371)
... +.++.. .....|.|.++..+| .|.|+|.+.|. .|..
T Consensus 156 ---~~~---------~~~~~~~~~~~~L~i~~~~~~d-~G~Y~C~a~n~-~g~~ 195 (212)
T 1f97_A 156 ---AFM---------NSSFTIDPKSGDLIFDPVTAFD-SGEYYCQAQNG-YGTA 195 (212)
T ss_dssp ---SCS---------SSCEEECTTTCCEEESSCCGGG-CEEEEEEEECS-SSCC
T ss_pred ---ccc---------CceeEecCCCceEEEEecChhh-CcEEEEEEccc-cCCc
Confidence 000 011111 123689999999999 99999999999 6665
No 177
>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.86 E-value=6.9e-21 Score=155.69 Aligned_cols=217 Identities=14% Similarity=0.161 Sum_probs=121.7
Q ss_pred cccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEee----------CCeeEEEEccCCcCCCeEEEEE
Q psy14542 8 KSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRR----------NSDEVLVLDRVQREDAGMYQCH 77 (371)
Q Consensus 8 ~~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~----------~~~~~l~i~~~~~~d~G~Y~C~ 77 (371)
.++|.|...|.. .+.+|++++|.|... .+...|.|+|+|..+.. .....|.|.+++.+|+|.|+|.
T Consensus 5 ~~kP~i~~~P~~--~V~~G~~VtL~C~~~--~~~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~ 80 (257)
T 1b6u_A 5 HRKPSLLAHPGP--LVKSEETVILQCWSD--VRFQHFLLHREGKFKDTLHLIGEHHDGVSKANFSIGPMMQDLAGTYRCY 80 (257)
T ss_dssp CCCCEECCBSCS--EEESSCCEEEEEEES--SCCSEEEEEEESTTCEEEEEECBCCTTCEEEEEEECSCCTTTCEEEEEE
T ss_pred CCCCEEEEcCCC--EecCCCCEEEEEecC--CCCcEEEEEECCCCCCcceeeeeccCCCceEEEEeecCCcccCEEEEEe
Confidence 467888888864 789999999999754 34678999998753321 1467899999999999999999
Q ss_pred EEcCCC-----CeEEEEEEEEec--ceeeEecCCceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcc
Q psy14542 78 VSADDD-----SAQMSAQVILGG--ELVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDR 150 (371)
Q Consensus 78 ~~~~~~-----~~~~~~~l~v~~--~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~ 150 (371)
+.+... ..+..+.|.|.+ ..|.+...+...+.+|++++|.|.+.+.+ ..+.|+|++..+.......
T Consensus 81 a~~~~~~~~~s~~S~~~~L~V~~~~~~P~l~~~p~~~V~~G~~vtL~C~~~~~~--~~~~w~k~g~~~~~~~~~~----- 153 (257)
T 1b6u_A 81 GSVTHSPYQLSAPSDPLDIVITGLYEKPSLSAQPGPTVLAGESVTLSCSSRSSY--DMYHLSREGEAHERRFSAG----- 153 (257)
T ss_dssp EECSSCTTSCCCCCCCEEEEEECSSCCCEEECSSCTTCBTTCEEEEEEECSSCC--SEEEEEETTSSCEECCBCB-----
T ss_pred EeccCCCccccccCCCEEEecccCCCCcceEccCCCccCCCCEEEEEEeCCCCC--cEEEEEECCcccCcccccc-----
Confidence 985421 234556777763 34566655555568999999999998754 5899999987665432100
Q ss_pred cCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeee--ccceeeeecchhccccceeee-
Q psy14542 151 VQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSV--NRGRLSLTENKRLLSAAKMFE- 227 (371)
Q Consensus 151 ~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~--~~~~l~v~~~~~~~~p~~~~~- 227 (371)
. ... + ..+..|.|.+++ | +|.|+|.+.+. ......+. ....|.|. .+|.+...
T Consensus 154 -~-~~~---------~----~~~~~l~I~~v~--D-~G~Y~C~a~~~-~~p~~~s~~S~pl~L~V~-----g~p~~~~p~ 209 (257)
T 1b6u_A 154 -P-KVN---------G----TFQADFPLGPAT--H-GGTYRCFGSFR-DSPYEWSNSSDPLLVSVT-----GNPSNSWPS 209 (257)
T ss_dssp -C-CSS---------S----CCBEEEEEEECC--S-CEEEEEEEECS-SCTTBBCCCCCCEEECCB-----CCC------
T ss_pred -c-ccC---------C----ceeEEEEecccc--c-CEEEEEEEEcC-CCCcccccCCCCEEEEEe-----ccCCCCCCC
Confidence 0 000 0 012679999998 8 99999999865 22111111 11255555 34443311
Q ss_pred eeeeeeeecCCeEEEEEEeecCCCCceEEEeCCc
Q psy14542 228 KHRILNVKKDESVILPCSAQGNPLPTIKWYKQDS 261 (371)
Q Consensus 228 ~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~ 261 (371)
+.... ...|..+.|.|.+ |.+.+.+.|...+.
T Consensus 210 ~~~~~-~~~g~~~~l~~~~-~~~~~~~~~~~~~~ 241 (257)
T 1b6u_A 210 PTEPS-SETGNPRHLHAAA-EQKLISEEDLNLDL 241 (257)
T ss_dssp ----------------------------------
T ss_pred CcccC-ccCCCeEEEEEEE-cchHHHHHHhhhhh
Confidence 11112 5668888999875 46667888976543
No 178
>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}
Probab=99.86 E-value=2.5e-21 Score=155.20 Aligned_cols=192 Identities=15% Similarity=0.244 Sum_probs=123.5
Q ss_pred CCceeeecCCcEEEEEEecCCCCC--ceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeE------eccc
Q psy14542 103 SNQVVVDVGHRIELHCRVSPKRLS--SAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHM------LSSG 174 (371)
Q Consensus 103 ~~~~~~~~g~~v~l~C~~~~~~~~--~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~------~~~~ 174 (371)
+....+..|++++|.|.+.+.+.+ ..+.|+|++..+...... ..... .+........++... ..+.
T Consensus 6 p~~vtv~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~~~~~~-~~~~~-----~~~~~~~~~~~r~~~~~~~~~~~~~ 79 (218)
T 4frw_A 6 SDVVTVVLGQDAKLPCFYRGDSGEQVGQVAWARVDAGEGAQELA-LLHSK-----YGLHVSPAYEGRVEQPPPPRNPLDG 79 (218)
T ss_dssp CSEEEEETTSCEEECCEECCCTTCEEEEEEEEEECSSSCEEEEE-EEETT-----TEEEECGGGTTTEECCSSCCCTTBC
T ss_pred CCeEEEEcCCCEEEEEEEEcCCCCCccEEEEEECCCCCCceeEE-EecCC-----CCeEeCccccceEEEecccccCCeE
Confidence 344556899999999999887652 358999977543322100 00000 000000000112111 1235
Q ss_pred eEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecCCCCce
Q psy14542 175 ELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTI 254 (371)
Q Consensus 175 ~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v 254 (371)
+|.|.+++.+| +|.|.|.+.+...+...... .+.+.. .++.......... +..|..+.+.|.+.+.|.|.+
T Consensus 80 sL~I~~v~~~D-~G~Y~C~~~~~~~~~~~~~~---~~~~~~----~~~~~~~~~~~~~-~~~~~~~~~~c~~~g~p~p~i 150 (218)
T 4frw_A 80 SVLLRNAVQAD-EGEYECRVSTFPAGSFQARL---RLRVLV----PPLPSLNPGPALE-EGQGLTLAASCTAEGSPAPSV 150 (218)
T ss_dssp CEEESSCCGGG-CEEEEEEEEEETTEEEEEEE---EEEEEB----CCCCEEEECSCEE-TTCCSEEEEEEEEEEBSCCEE
T ss_pred EEEEeeccHHH-CCceeEEEEeccCceeeeEE---EEEEee----eccceeeeeeeee-eeeccccceeeeccCCcCceE
Confidence 79999999999 99999999876232322222 333331 1222222233333 778899999999999999999
Q ss_pred EEEeCCcccccCCceE-----EecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEe
Q psy14542 255 KWYKQDSPVEESDRIQ-----RIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYA 309 (371)
Q Consensus 255 ~W~~~~~~~~~~~~~~-----~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 309 (371)
+|++++..+....... ...+.|.|..+..+|+|.|+|.|.|..|.....+.+.|.
T Consensus 151 ~W~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~g~~~~~~t~~v~ 210 (218)
T 4frw_A 151 TWDTEVKGTTSSRSFKHSRSAAVTSEFHLVPSRSMNGQPLTCVVSHPGLLQDQRITHILH 210 (218)
T ss_dssp EEEESSCCEEEEEEEECSSSEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECC
T ss_pred EEEECCcccccCceEecCCcEEEEEEEEEeeCCHHhCeEEEEEEEeCCCCeEEEEEEEEE
Confidence 9999998776554333 223579999999999999999999999988777666654
No 179
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}
Probab=99.86 E-value=1.9e-21 Score=159.53 Aligned_cols=191 Identities=18% Similarity=0.262 Sum_probs=120.1
Q ss_pred ceeeecCCcEEEEEEecC---CCCCceEEEeeCCEEeeeCCeeEEEEccc-----CcC--CCeeEEE--EEeCCceeEec
Q psy14542 105 QVVVDVGHRIELHCRVSP---KRLSSAKAWLKDGLVLRRNSDEVLVLDRV-----QRE--DAGMYQC--HIEDGKYHMLS 172 (371)
Q Consensus 105 ~~~~~~g~~v~l~C~~~~---~~~~~~v~W~~~~~~~~~~~~~~~~~~~~-----~~~--~~g~y~~--~~~~~~~~~~~ 172 (371)
...+.+|+.++|.|.+.+ .+. +.+.|++++..... ..+..... ... ....+.. ....++..+..
T Consensus 11 ~v~v~~G~~v~L~C~~~~~~~~~~-~~v~W~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 86 (250)
T 2fbo_J 11 EVEVHAGGTVELPCSYQLANDTQP-PVISWLKGASPDRS---TKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASVAN 86 (250)
T ss_dssp EEEECTTSCEEECCEEEECSCCSC-CEEEEEEEEETTEE---EEEEEEEECCCBTTBCCCTTSEEEEECGGGTTTEECSC
T ss_pred ceEEecCCeEEEEEEeEcCCCCCc-eEEEEEeCCCCCcc---EEEEeeccccccccccccccccccccCCCcCceEEecc
Confidence 344589999999999976 454 89999998643210 00000000 000 0000000 00012333322
Q ss_pred --cceEEEEEeecCCccceeEEEeecccccee-----eeeeccceeeeecchhccccceeeeee-eeeeeecCCeEEEEE
Q psy14542 173 --SGELIIHQVDESDRYRSYQCRGVNKLTGAS-----LLSVNRGRLSLTENKRLLSAAKMFEKH-RILNVKKDESVILPC 244 (371)
Q Consensus 173 --~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~-----~~~~~~~~l~v~~~~~~~~p~~~~~~~-~~~~~~~g~~~~l~C 244 (371)
+..|.|.+++.+| +|.|+|.+.+. .+.. .... .|.|.... .+|.+..... ... +..|+.+.|.|
T Consensus 87 ~~~~~L~I~~v~~~D-~G~Y~C~~~~~-~~~~~~~~~~~~~---~l~V~~~~--~~~~~~~~~~~~~~-v~~g~~v~L~C 158 (250)
T 2fbo_J 87 LAAPTLRLTHVHPQD-GGRYWCQVAQW-SIRTEFGLDAKSV---VLKVTGHT--PSNNVHVSTAEVVQ-VDEGNDITMTC 158 (250)
T ss_dssp TTSCCEEECSCCGGG-CEEEEEEEECT-TCCSGGGEEEEEE---EEEETTTS--CCSCCEECCCSEEE-CCTTCCEEECC
T ss_pred CCcceEEEeeCChhh-CeEEEEEeccC-ccCCcccccceeE---EEEEeccC--CCCeEEEecCceEE-ecCCCcEEEEE
Confidence 3589999999999 99999999987 4422 2233 66666321 1333333222 333 77899999999
Q ss_pred EeecCCCCceEEEeCCcccccCC------------------------ceEE-ecceEEEeccCCCCCeEEEEEEEcCCC-
Q psy14542 245 SAQGNPLPTIKWYKQDSPVEESD------------------------RIQR-IGSSLSISHVEESDSGVWNCVANNSEG- 298 (371)
Q Consensus 245 ~~~~~p~~~v~W~~~~~~~~~~~------------------------~~~~-~~~~l~i~~~~~~d~G~Y~C~a~n~~g- 298 (371)
.+.+.|.|.+.|++++..+.... +... ..+.|.|.++..+|+|.|+|.|.|..|
T Consensus 159 ~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~ 238 (250)
T 2fbo_J 159 PCTDCANANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGE 238 (250)
T ss_dssp CEESCTTCEEEEEEEEECSSCSSSCEEEEEEEECTTSCEEECTTTTTSEEEETTTEEEECSCCGGGCEEEEEEEESSSSG
T ss_pred EecCCCCCeeEEEeCCCcccccccCcceeEeccCCCCccccCceEecccccCCccEEEEecCCcccCEEEEEEecCCccc
Confidence 99999999999999988765422 1111 336899999999999999999999655
Q ss_pred --CceeEEEEE
Q psy14542 299 --QDKMQLFIQ 307 (371)
Q Consensus 299 --~~~~~~~l~ 307 (371)
....++.|.
T Consensus 239 ~g~~~~~~~l~ 249 (250)
T 2fbo_J 239 LDADRSSTILK 249 (250)
T ss_dssp GGEEEEEEEEE
T ss_pred cCccceeEEEe
Confidence 445555444
No 180
>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A
Probab=99.86 E-value=1.9e-21 Score=151.70 Aligned_cols=148 Identities=18% Similarity=0.332 Sum_probs=107.3
Q ss_pred ecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEE-eecCCcc
Q psy14542 109 DVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQ-VDESDRY 187 (371)
Q Consensus 109 ~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~-~~~~d~~ 187 (371)
..|+.+.|.|.+.+ +. .++|+|++..+.... +..|.|.+ ++.+| +
T Consensus 12 ~~G~~v~L~C~~~~-~~--~i~W~k~g~~l~~~~------------------------------~~~L~I~~~~~~~D-~ 57 (186)
T 1jbj_A 12 ISGTSVELTCPLDS-DE--NLKWEKNGQELPQKH------------------------------DKHLVLQDFSEVED-S 57 (186)
T ss_dssp EETTEEEEECSSCC-CT--TCEEEETTEEECSCC------------------------------CSEEEEESCCTTTS-C
T ss_pred eCCcEEEEEEeCCC-CC--ceEEEECCEECCCCC------------------------------CCEEEECCCCcccc-C
Confidence 68999999999987 43 599999999876531 15799999 99999 9
Q ss_pred ceeEEEeeccccceeeeeeccceeeeecchhcc-------------ccceeeee----eee--eeeecCCeEEEEEEeec
Q psy14542 188 RSYQCRGVNKLTGASLLSVNRGRLSLTENKRLL-------------SAAKMFEK----HRI--LNVKKDESVILPCSAQG 248 (371)
Q Consensus 188 g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~-------------~p~~~~~~----~~~--~~~~~g~~~~l~C~~~~ 248 (371)
|.|+|.+.|. .|...... .+.|....... +|.+.... ... ..+..|+.+.|.|.+
T Consensus 58 G~Y~C~a~n~-~g~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~l~C~~-- 131 (186)
T 1jbj_A 58 GYYVCYTPAS-NKNTYLYL---KARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLTCGL-- 131 (186)
T ss_dssp EEEEEECSSC-CCCCCEEE---CCCCCSCCCCCCCCCCCCCCSCCSSSTTCCSCCCCSSCCEECCCSSSCEEEEECSS--
T ss_pred EEEEEEEEeC-CCcEEEEE---EEEEecccccccccccccccccCCccccccccccccccccceecCCCCeEEEEeeC--
Confidence 9999999998 56533333 33333211000 01110000 000 114599999999988
Q ss_pred CCCCceEEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCCCc
Q psy14542 249 NPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQD 300 (371)
Q Consensus 249 ~p~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~ 300 (371)
|.|.+.|+++|..+..... .++.|.|.++..+|+|.|+|.|.|..|..
T Consensus 132 -p~p~i~W~k~g~~i~~~~~---~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~ 179 (186)
T 1jbj_A 132 -TDKTIKWLKDGSIISPLNA---TKNTWNLGNNAKDPRGTYQCQGAKETSNP 179 (186)
T ss_dssp -SCSCEEEEETTEECCCSSC---CSSCCEEEETTSCCEEEEEEEESSCEEEE
T ss_pred -CCCeEEEEECCEECcccCC---CcceEEECCCCcCcCEEEEEEEEcCcCCc
Confidence 7899999999998865432 46789999999999999999999998876
No 181
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.86 E-value=2.2e-20 Score=145.67 Aligned_cols=161 Identities=21% Similarity=0.437 Sum_probs=120.5
Q ss_pred eecCCcEEEEEEecCCCCC-ceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCc
Q psy14542 108 VDVGHRIELHCRVSPKRLS-SAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDR 186 (371)
Q Consensus 108 ~~~g~~v~l~C~~~~~~~~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~ 186 (371)
+.+|+.++|.|.+.+.+.+ ..+.|++++..+...... . ....|.|. +.+|
T Consensus 10 v~~G~~v~l~C~~~~~~~p~~~~~W~k~~~~l~~~~~~----------------------~----~~~~l~i~--~~~d- 60 (184)
T 3b5h_A 10 EDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALP----------------------G----QKTEFKVD--SDDQ- 60 (184)
T ss_dssp EEETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTCC----------------------C----SEEEEEEC--GGGC-
T ss_pred EecCCCEEEEEECCCCCCCceEEEEEeCCEEeeccccc----------------------C----CcEEEEEe--chhh-
Confidence 4789999999999877651 399999999887654210 0 01345454 5788
Q ss_pred cceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecCC-CCceEEEe---CCcc
Q psy14542 187 YRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNP-LPTIKWYK---QDSP 262 (371)
Q Consensus 187 ~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p-~~~v~W~~---~~~~ 262 (371)
.|.|+|.+.+. .. ... .+.|. .+|.+...+.... +..|+.+.|.|.+.+.| .+.+.|++ ++..
T Consensus 61 ~G~Y~C~~~n~-~~---~~~---~l~V~-----~~P~~~~~~~~~~-~~~g~~~~l~C~~~g~p~~~~i~W~~~~~~~~~ 127 (184)
T 3b5h_A 61 WGEYSCVFLPE-PM---GTA---NIQLH-----GPPRVKAVKSSEH-INEGETAMLVCKSESVPPVTDWAWYKITDSEDK 127 (184)
T ss_dssp CEEEEEEEEST-TS---CEE---EEEEC-----CSCCCEESCSEEE-ECTTSCEEEEEECCCSSCCCEEEEEECCSSSCE
T ss_pred CeEEEEEEECC-cC---cEE---EEEEe-----cCCceeecCCCcE-EcCCCcEEEEEEECCCCCCCeEEEEEcCCCCCE
Confidence 99999999974 21 233 67777 6777776665555 89999999999999999 79999999 4443
Q ss_pred -cccC--CceEEe----cceEEEeccC-CCCCeEEEEEEEcCCCCceeEEEEEEec
Q psy14542 263 -VEES--DRIQRI----GSSLSISHVE-ESDSGVWNCVANNSEGQDKMQLFIQYAH 310 (371)
Q Consensus 263 -~~~~--~~~~~~----~~~l~i~~~~-~~d~G~Y~C~a~n~~g~~~~~~~l~v~~ 310 (371)
+... .++... ...|.|.++. .+|+|.|+|.|.|..|.....+.|.|..
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~ 183 (184)
T 3b5h_A 128 ALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRVRS 183 (184)
T ss_dssp ECCTTGGGTEEEEEETTEEEEEECSCCTTTSSEEEEEEEEETTEEEEEEEEEEEC-
T ss_pred EeecCCCCEEEEEecCCeeEEEEeeccccccCceEEEEEEeCCCcceEEEEEEEec
Confidence 3222 344422 2379999999 9999999999999999999888888864
No 182
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3
Probab=99.86 E-value=1.2e-21 Score=151.26 Aligned_cols=164 Identities=15% Similarity=0.210 Sum_probs=115.2
Q ss_pred eecCCcEEEEEEe-cCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCc
Q psy14542 108 VDVGHRIELHCRV-SPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDR 186 (371)
Q Consensus 108 ~~~g~~v~l~C~~-~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~ 186 (371)
..+|++++|.|.. ....+.+.+.|+|++..+...... .... ...+++.+..++.|.|.+++.+|
T Consensus 8 ~~~G~~v~L~c~~~~~~~~~~~i~W~k~~~~i~~~~~~-----~~~~---------~~~~r~~~~~~gsL~I~~v~~~D- 72 (176)
T 1hng_A 8 GALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRK-----MKPF---------LKSGAFEILANGDLKIKNLTRDD- 72 (176)
T ss_dssp EETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETT-----SCCE---------ESSTTEEECTTSCEEESSCCGGG-
T ss_pred EEcCCcEEEcCCCCCcccccccEEEEeCCceeEEEcCC-----Ceec---------CCCCeEEECCCCcEEEccccccc-
Confidence 3789999999943 222223789999998755421100 0000 01346666666789999999999
Q ss_pred cceeEEEeecccccee--eeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccc
Q psy14542 187 YRSYQCRGVNKLTGAS--LLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVE 264 (371)
Q Consensus 187 ~g~y~C~~~~~~~~~~--~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~ 264 (371)
+|.|+|.+.+. .|.. .... .|.|... ...|.+ ...+..+.|.|.+.+.|.|.+.|+++|..+.
T Consensus 73 ~G~Y~C~~~n~-~g~~~~~~~~---~l~V~~~--~~~p~i---------~~~~~~v~L~C~~~g~p~p~i~W~~~g~~l~ 137 (176)
T 1hng_A 73 SGTYNVTVYST-NGTRILNKAL---DLRILEM--VSKPMI---------YWECSNATLTCEVLEGTDVELKLYQGKEHLR 137 (176)
T ss_dssp CEEEEEEEEET-TCCEEEEEEE---EEEEECC--CCCCEE---------EEETTTTEEEEECSSCSSCEEEEEETTEEEE
T ss_pred CEEEEEEEEeC-CCCEEEEEEE---EEEEeCC--CCCCEE---------EecCCcEEEEEEecCCCCcEEEEEECCEECC
Confidence 99999999998 6654 3334 5666531 112222 2234568999999999999999999998876
Q ss_pred cCCceEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEE
Q psy14542 265 ESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQY 308 (371)
Q Consensus 265 ~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 308 (371)
.+.+ +.|..+..+|+|.|+|.|.|..|.......|.+
T Consensus 138 ~~~~-------~~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~~ 174 (176)
T 1hng_A 138 SLRQ-------KTMSYQWTNLRAPFKCKAVNRVSQESEMEVVNC 174 (176)
T ss_dssp EESS-------SEEEEECSCCSSCEEEEEEETTEEEEEEECCCC
T ss_pred CCCc-------EEEEEEEccCCeEEEEEEEecCCCceecccccC
Confidence 5443 455578899999999999999999888776654
No 183
>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.86 E-value=7.1e-21 Score=154.45 Aligned_cols=186 Identities=11% Similarity=0.070 Sum_probs=124.6
Q ss_pred ceeeEecCCceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccce
Q psy14542 96 ELVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGE 175 (371)
Q Consensus 96 ~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~ 175 (371)
.+|.+...+...+.+|++++|.|.+.+. . ..+.|+|++..+..... . ......+..
T Consensus 6 ~kP~i~~~P~~~v~~G~~VtL~C~~~~~-~-~~~~w~k~g~~~~~~~~------~----------------~~~~~~~~~ 61 (242)
T 1p6f_A 6 PKPFIWAEPHFMVPKEKQVTICCQGNYG-A-VEYQLHFEGSLFAVDRP------K----------------PPERINKVK 61 (242)
T ss_dssp CCCEEEEESCSEEETTCCEEEEEECCTT-C-CEEEEEETTEEEEEECC------S----------------SCTTCCEEE
T ss_pred CCCEEEeeCCCccCCCCcEEEEEeeCCC-C-cEEEEEECCCccccccc------c----------------ccCCcceeE
Confidence 3455555555566899999999998753 3 68999999987642110 0 000012257
Q ss_pred EEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecCCCCceE
Q psy14542 176 LIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIK 255 (371)
Q Consensus 176 l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~ 255 (371)
|.|.+++.+| +|.|+|.+.+. .+....+. ...|.|... ..+|.+...+. .. +.+|+.++|.|.+.+. .+.+.
T Consensus 62 L~I~~v~~~D-sG~Y~C~~~~~-~~~s~~S~-~~~L~V~~~--~~~P~i~~~p~-~~-v~~G~~vtL~C~~~~~-~~~~~ 133 (242)
T 1p6f_A 62 FYIPDMNSRM-AGQYSCIYRVG-ELWSEPSN-LLDLVVTEM--YDTPTLSVHPG-PE-VISGEKVTFYCRLDTA-TSMFL 133 (242)
T ss_dssp EEECSCCGGG-CEEEEEEEEET-TEECCCCC-CEEEEEECC--SCCCEEEEESC-SE-EETTCEEEEEEECTTS-CSEEE
T ss_pred EEecCCCccc-CeEEEEEEecC-CccccCCc-ceEEEeecc--cCCCceEccCC-Cc-cCCCCcEEEEEecCCC-CCEEE
Confidence 9999999999 99999999765 33222221 114555421 13555554442 34 8999999999998754 46899
Q ss_pred EEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCC---CCceeEEEEEEecCcc
Q psy14542 256 WYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSE---GQDKMQLFIQYAHGKY 313 (371)
Q Consensus 256 W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~---g~~~~~~~l~v~~~p~ 313 (371)
|+|+|..+.........++.|.|.++..+|+|.|+|.+.|.. ...+..+.|.|.+.+.
T Consensus 134 w~k~g~~~~~~~~~~~~~~~l~I~~v~~~d~G~Y~C~a~n~~~~~s~~S~~~~l~V~~~~~ 194 (242)
T 1p6f_A 134 LLKEGRSSHVQRGYGKVQAEFPLGPVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLVTGDIE 194 (242)
T ss_dssp EEECSSSCEEEEEECSSEEEEEEEECCGGGCEEEEEEEEEETTEECCCCCCEEEEEEC---
T ss_pred EEECCCccCccccCCCceEEEEeCCCccccCEEEEEEEECCCCcccCCCCCEEEEEeccCC
Confidence 999998765421111234689999999999999999999864 2456678888886544
No 184
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A
Probab=99.86 E-value=1.4e-20 Score=151.83 Aligned_cols=171 Identities=17% Similarity=0.235 Sum_probs=108.9
Q ss_pred CCCcEEEeccCcEEEEEEecCCCC--CCeeEEEeCCEE-----------EeeC------------------CeeEEEEcc
Q psy14542 17 PSGQVVVDVGHRIELHCRVSPKRL--SSAKAWLKDGLV-----------LRRN------------------SDEVLVLDR 65 (371)
Q Consensus 17 p~~~~~~~~G~~v~l~C~~~~~~~--~~~~~W~~~~~~-----------~~~~------------------~~~~l~i~~ 65 (371)
|..++.+.+|++++|.|.+..... ...+.|+|++.. +... +..+|.|.+
T Consensus 10 P~~pV~v~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~ 89 (226)
T 4f80_A 10 PSGPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAGKAALRIHN 89 (226)
T ss_dssp CSSCEEEETTSCEEEEEEEESCCCCTTSEEEEEETTTCCEEEEEETTEECGGGSCTTTTTTEEEECTTGGGTEEEEEESS
T ss_pred CCCCEEEEcCCcEEEEEEEECCCCCCceEEEEEECCCCceEEEEeCCeEcccccCccccceEEEecccccCCeEEEEEee
Confidence 455588999999999997653322 236999986531 1100 356899999
Q ss_pred CCcCCCeEEEEEEEcCCCCeEEEEEEEEecceeeEecCCceeeecCCcEEEEEEecCC-CCCceEEEeeCCEEeeeCCee
Q psy14542 66 VQREDAGMYQCHVSADDDSAQMSAQVILGGELVEIASSNQVVVDVGHRIELHCRVSPK-RLSSAKAWLKDGLVLRRNSDE 144 (371)
Q Consensus 66 ~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~-~~~~~v~W~~~~~~~~~~~~~ 144 (371)
++.+|+|.|+|.+.|..+.....+.+.+. ++.........+.+|+.+.|.|.+.+. |. +.++|++++..+......
T Consensus 90 v~~~D~G~Y~C~a~n~~~~~~~~v~~~~~--~~~~~~~~~~~~~~g~~v~l~c~~~g~~P~-p~i~W~k~~~~~~~~~~~ 166 (226)
T 4f80_A 90 VTASDSGKYLCYFQDGDFYEKALVELKVA--ALGSDLHVDVKGYKDGGIHLECRSTGWYPQ-PQIQWSNNKGENIPTVEA 166 (226)
T ss_dssp CCGGGCEEEEEEEEETTEEEEEEEEEEEE--BCCCCCEEEEEEEETTEEEEEEEEEEEBSC-CEEEEECTTSCBCCCEEC
T ss_pred CchHHCeeEEEEEECCCcEEEEEEEEeec--cceecccceeeeccCCceeeEEEeccCCCC-CEEEEEECCceEcCCCce
Confidence 99999999999999977666555555544 222222223334789999999999885 55 899999965443322111
Q ss_pred EEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeee
Q psy14542 145 VLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLT 214 (371)
Q Consensus 145 ~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~ 214 (371)
.... ...| .+ ..+.+..++.+| .|.|+|.|.|. .+...... .|.|.
T Consensus 167 ~~~~-----~~~g---------~~-----~v~s~l~v~~~d-~G~YtC~a~N~-~g~~~~~~---~v~v~ 212 (226)
T 4f80_A 167 PVVA-----DGVG---------LY-----AVAASVIMRGSS-GEGVSCTIRSS-LLGLEKTA---SISIA 212 (226)
T ss_dssp CCEE-----CTTS---------CE-----EEEEEEEECC-----CEEEEEEET-TTTEEEEE---EECCC
T ss_pred EEEE-----CCCC---------cE-----EEEEEEEechhc-CcEEEEEEEeC-CCCeEEEE---EEEEC
Confidence 1100 0111 11 123455678889 99999999999 66666666 67766
No 185
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Probab=99.86 E-value=3e-21 Score=152.80 Aligned_cols=171 Identities=19% Similarity=0.251 Sum_probs=124.7
Q ss_pred EEEeCCCcEEEeccCcEEEEEEecCCCCC-CeeEEEeCCEEEeeC---------CeeEEEEccCCcCCCeEEEEEEEcCC
Q psy14542 13 IEMSPSGQVVVDVGHRIELHCRVSPKRLS-SAKAWLKDGLVLRRN---------SDEVLVLDRVQREDAGMYQCHVSADD 82 (371)
Q Consensus 13 ~~~~p~~~~~~~~G~~v~l~C~~~~~~~~-~~~~W~~~~~~~~~~---------~~~~l~i~~~~~~d~G~Y~C~~~~~~ 82 (371)
+...+...+.+.+|+.+.|.|....+.|. +.+.|++++..+... ...+|.|.+++.+|+|.|+|.+.+..
T Consensus 10 ~~~~~~~~~~v~~G~~v~L~C~~~~~~p~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~ 89 (201)
T 3s97_C 10 FPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNLYIANVEASDKGNYSCFVSSPS 89 (201)
T ss_dssp CCSSCCCCEEEETTCCEEECCCCCSEESSCCEEEEEESSTTCBCCCSSSEEECTTTCCEEESSCCGGGCEEEEEEEEEGG
T ss_pred cCcCCCceEEEECCCCEEEeccccccCCCceEEEEEECCceeeeeeCCCeEEEcCCCeEEECcCCcccCeEEEEEEEecC
Confidence 34444444899999999999963566777 899999988655311 56789999999999999999999866
Q ss_pred CCeEE---EEEEEEec------ceeeEecC-CceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccC
Q psy14542 83 DSAQM---SAQVILGG------ELVEIASS-NQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQ 152 (371)
Q Consensus 83 ~~~~~---~~~l~v~~------~~~~~~~~-~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~ 152 (371)
+.... .+.+.+.. .+|.+... +...+..|+.++|.|.+.+.+. +.+.|++++..+.....
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~-p~v~W~~~~~~~~~~~~--------- 159 (201)
T 3s97_C 90 ITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPV-PDIRWRKVLEPMPSTAE--------- 159 (201)
T ss_dssp GTEEEECCCEEEEEECCSSCCCEEEEEEEECCCEEEETTCCEEEEEEEEEESC-CEEEEEETTBCCCTTCE---------
T ss_pred CCcchhhcccceeeccccccCCCCCceEecCCceEEecCCcEEEEEEccCCCC-CceEEEeCCCcCCCcee---------
Confidence 55433 23333321 23434333 3444589999999999988877 89999999986553211
Q ss_pred cCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeee
Q psy14542 153 REDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLT 214 (371)
Q Consensus 153 ~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~ 214 (371)
....+..|.|.++..+| .|.|+|.+.|. .|...... .|.|.
T Consensus 160 ----------------~~~~~~~L~i~~v~~~d-~G~Y~C~a~n~-~g~~~~~~---~l~V~ 200 (201)
T 3s97_C 160 ----------------ISTSGAVLKIFNIQLED-EGIYECEAENI-RGKDKHQA---RIYVQ 200 (201)
T ss_dssp ----------------EETTTTEEEECSCCGGG-CEEEEEEEEET-TEEEEEEE---EEEEE
T ss_pred ----------------ecCCCCEEEEccCChhh-CEEEEEEEEec-CCceeeeE---EEEEe
Confidence 11123689999999999 99999999998 77766665 66654
No 186
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3
Probab=99.86 E-value=1.6e-20 Score=144.95 Aligned_cols=146 Identities=14% Similarity=0.155 Sum_probs=109.8
Q ss_pred EEEeccCcEEEEEEec-CCCCCCeeEEEeCCEEEee----------C------CeeEEEEccCCcCCCeEEEEEEEcCCC
Q psy14542 21 VVVDVGHRIELHCRVS-PKRLSSAKAWLKDGLVLRR----------N------SDEVLVLDRVQREDAGMYQCHVSADDD 83 (371)
Q Consensus 21 ~~~~~G~~v~l~C~~~-~~~~~~~~~W~~~~~~~~~----------~------~~~~l~i~~~~~~d~G~Y~C~~~~~~~ 83 (371)
+.+.+|++++|.|... ...+.+.|.|+|++..+.. . .+++|.|.+++.+|+|.|+|.+.+..+
T Consensus 6 v~~~~G~~v~L~c~~~~~~~~~~~i~W~k~~~~i~~~~~~~~~~~~~~r~~~~~~gsL~I~~v~~~D~G~Y~C~~~n~~g 85 (176)
T 1hng_A 6 VWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYSTNG 85 (176)
T ss_dssp EEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTTSCEEESSCCGGGCEEEEEEEEETTC
T ss_pred EEEEcCCcEEEcCCCCCcccccccEEEEeCCceeEEEcCCCeecCCCCeEEECCCCcEEEcccccccCEEEEEEEEeCCC
Confidence 5788999999999322 2245668999999976531 1 345699999999999999999999888
Q ss_pred Ce--EEEEEEEEecceeeEecCCceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEE
Q psy14542 84 SA--QMSAQVILGGELVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQC 161 (371)
Q Consensus 84 ~~--~~~~~l~v~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~ 161 (371)
.. ...+.|.|...+. .+. ....+..+.|.|.+.+.+. +.+.|++++..+....
T Consensus 86 ~~~~~~~~~l~V~~~~~----~p~-i~~~~~~v~L~C~~~g~p~-p~i~W~~~g~~l~~~~------------------- 140 (176)
T 1hng_A 86 TRILNKALDLRILEMVS----KPM-IYWECSNATLTCEVLEGTD-VELKLYQGKEHLRSLR------------------- 140 (176)
T ss_dssp CEEEEEEEEEEEECCCC----CCE-EEEETTTTEEEEECSSCSS-CEEEEEETTEEEEEES-------------------
T ss_pred CEEEEEEEEEEEeCCCC----CCE-EEecCCcEEEEEEecCCCC-cEEEEEECCEECCCCC-------------------
Confidence 86 6677888773211 111 1134567999999999888 9999999998876532
Q ss_pred EEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeee
Q psy14542 162 HIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSV 206 (371)
Q Consensus 162 ~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~ 206 (371)
.+.|..+..+| .|.|+|.|.|. .|......
T Consensus 141 -------------~~~i~~~~~~d-~G~Y~C~a~N~-~g~~~~~~ 170 (176)
T 1hng_A 141 -------------QKTMSYQWTNL-RAPFKCKAVNR-VSQESEME 170 (176)
T ss_dssp -------------SSEEEEECSCC-SSCEEEEEEET-TEEEEEEE
T ss_pred -------------cEEEEEEEccC-CeEEEEEEEec-CCCceecc
Confidence 24455788899 99999999999 66655544
No 187
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X
Probab=99.86 E-value=4.2e-21 Score=153.50 Aligned_cols=162 Identities=16% Similarity=0.227 Sum_probs=119.0
Q ss_pred EEEeccCcEEEEEEecCCCC---CCeeEEEe----------------CCEEEee------C-----------CeeEEEEc
Q psy14542 21 VVVDVGHRIELHCRVSPKRL---SSAKAWLK----------------DGLVLRR------N-----------SDEVLVLD 64 (371)
Q Consensus 21 ~~~~~G~~v~l~C~~~~~~~---~~~~~W~~----------------~~~~~~~------~-----------~~~~l~i~ 64 (371)
+.+.+|++++|.|.+..... .+.+.|++ ++..+.. . ...+|.|.
T Consensus 10 v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~i~ 89 (214)
T 3jz7_A 10 IEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSNDVKSGDASINVT 89 (214)
T ss_dssp EEEETTSCEEECCBCCCCTTCCSCCEEEEEEEESSSSCCSEEEEEEETTEEECCCCGGGTTTEEESCSCGGGTBCCEEEC
T ss_pred EEEecCCCEEEEEEEecCCCCCCcEEEEEEecCCCCCCCceEEEEEeCCeEccccCCccccceEEeccCccCCcccEEEc
Confidence 78999999999996543322 46899988 5554431 0 35679999
Q ss_pred cCCcCCCeEEEEEEEcCCCCeEEEEEEEEecceeeEec-CCceeeecCCcEEEEEEe-cCCCCCceEEEeeCCE--Eeee
Q psy14542 65 RVQREDAGMYQCHVSADDDSAQMSAQVILGGELVEIAS-SNQVVVDVGHRIELHCRV-SPKRLSSAKAWLKDGL--VLRR 140 (371)
Q Consensus 65 ~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~-~~~~~~~~g~~v~l~C~~-~~~~~~~~v~W~~~~~--~~~~ 140 (371)
+++.+|+|.|+|.+.+..+.....+.|.|.. +|.+.. .....+.+|+.+.|.|.+ .+.|. +.+.|++++. .+..
T Consensus 90 ~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~-~p~~~~~~~~~~~~~g~~v~l~C~~~~g~p~-~~v~W~~~~~~~~~~~ 167 (214)
T 3jz7_A 90 NLQLSDIGTYQCKVKKAPGVANKKFLLTVLV-KPSGTRCFVDGSEEIGNDFKLKCEPKEGSLP-LQFEWQKLSDSQTMPT 167 (214)
T ss_dssp SCCGGGCEEEEEEEEETTEEEEEEEEEEEEC-CCBSCEEEEESCCBTTCCEEEEEECSBCCSS-CEEEEEECSTTCCCCG
T ss_pred cCChhhCeEEEEEEEeCCCccccEEEEEEEc-CCCCceeeeecceecCCcEEEEecCCCCCCC-CEEEEEECCCCCccCc
Confidence 9999999999999999888778888898883 333222 222234789999999999 67776 8999999543 2221
Q ss_pred CCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeee
Q psy14542 141 NSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLT 214 (371)
Q Consensus 141 ~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~ 214 (371)
. ......+..|.|.++..+| .|.|+|.|.|. .|...... .|.|.
T Consensus 168 ~-------------------------~~~~~~~~~L~i~~~~~~d-~G~Y~C~a~N~-~g~~~~~~---~l~V~ 211 (214)
T 3jz7_A 168 P-------------------------WLAEMTSPVISVKNASSEY-SGTYSCTVQNR-VGSDQCML---RLDVV 211 (214)
T ss_dssp G-------------------------GGGGTTSSEEEECSCCGGG-CEEEEEEEECS-SCEEEEEE---EECCB
T ss_pred c-------------------------ceeccCCCEEEEecCCHHH-CEEEEEEEEcC-CCcEEEEE---EEEEe
Confidence 1 1111123589999999999 99999999999 77776666 66665
No 188
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B
Probab=99.85 E-value=1.5e-20 Score=148.85 Aligned_cols=169 Identities=17% Similarity=0.265 Sum_probs=117.0
Q ss_pred eEEEeCCCcEEEeccCcEEEEEEecCCCCC-----CeeEEEe-CCEEEeeC------------CeeEEEEccCCcCCCeE
Q psy14542 12 SIEMSPSGQVVVDVGHRIELHCRVSPKRLS-----SAKAWLK-DGLVLRRN------------SDEVLVLDRVQREDAGM 73 (371)
Q Consensus 12 ~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~-----~~~~W~~-~~~~~~~~------------~~~~l~i~~~~~~d~G~ 73 (371)
.+...+.. +.+.+|+++.|.|.+. +.+. +.+.|+| ++...... ...+|.|.+++.+|+|.
T Consensus 4 ~v~~p~~~-v~v~~G~~v~L~C~~~-~~p~~~~~~~~v~W~k~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~ 81 (202)
T 3bp6_B 4 TVTAPKEV-YTVDVGSSVSLECDFD-RRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPSVQVRDSGQ 81 (202)
T ss_dssp CEECSCSE-EEEETTSCEEEEEEEC-TTC---CTTEEEEEEECC--CCCBCSSCEECGGGGGGTEEEEEECSCCGGGCEE
T ss_pred EEecCCcC-EEEeCCCcEEEEEEec-CCCCCCccceEEEEEcCCCcccccCCceEEeeccccCCeeEEEECCCCHHHCcE
Confidence 34433334 8899999999999654 4443 7899999 33322111 34789999999999999
Q ss_pred EEEEEEcCCCCeEEEEEEEEecce--eeEecCCceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEccc
Q psy14542 74 YQCHVSADDDSAQMSAQVILGGEL--VEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRV 151 (371)
Q Consensus 74 Y~C~~~~~~~~~~~~~~l~v~~~~--~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~ 151 (371)
|+|.+.+..+.....+.|.|...+ |.+.. ....+|+.+.|.|.+.+.|. +.+.|++++..+.... .
T Consensus 82 Y~C~~~~~~~~~~~~~~l~V~~~~~~p~~~~---~~~~~g~~v~l~C~~~g~P~-p~v~W~~~~~~~~~~~----~---- 149 (202)
T 3bp6_B 82 YRCLVICGAAWDYKYLTVKVKASYMRIDTRI---LEVPGTGEVQLTCQARGYPL-AEVSWQNVSVPANTSH----I---- 149 (202)
T ss_dssp EEEEEEETTEEEEEEEEEEEEBCCCCEEEEE---EECTTTCCEEEEEEEEEBSC-CEEEETTCCSCCEEEE----E----
T ss_pred EEEEEEeCCCcceEEEEEEecCCCCcccEEE---EecCCCCeEEEEEEccccCC-ceEEEEeCCCCccCce----e----
Confidence 999999988777788888887322 21111 12368999999999988777 8999999776443210 0
Q ss_pred CcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeee
Q psy14542 152 QREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLT 214 (371)
Q Consensus 152 ~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~ 214 (371)
....| .+ ..+.+.++...| .|.|+|.+.|. .|...... .+.|.
T Consensus 150 -~~~~~---------~~-----~~~~i~~v~~~d-~G~Y~C~a~N~-~g~~~~~~---~l~v~ 192 (202)
T 3bp6_B 150 -RTPEG---------LY-----QVTSVLRLKPQP-SRNFSCMFWNA-HMKELTSA---IIDPL 192 (202)
T ss_dssp -ECTTS---------CE-----EEEEEEEECCCT-TCCEEEEEEET-TTTEEEEE---EECC-
T ss_pred -eCCCC---------CE-----EEEEEEEEEcCC-CCEEEEEEEcC-CcccccEE---EEEec
Confidence 00111 11 345678899999 99999999999 77666665 66665
No 189
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Probab=99.85 E-value=4.6e-20 Score=148.38 Aligned_cols=186 Identities=13% Similarity=0.234 Sum_probs=118.4
Q ss_pred eeecCCcEEEEEEecCCCC----CceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEec------cceE
Q psy14542 107 VVDVGHRIELHCRVSPKRL----SSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLS------SGEL 176 (371)
Q Consensus 107 ~~~~g~~v~l~C~~~~~~~----~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~------~~~l 176 (371)
.+.+|+.++|.|.+.+.+. ...+.|++++..+......... .......| .++..+.. +..|
T Consensus 12 ~~~~G~~v~L~C~~~~~p~~~~~~~~v~W~~~~~~v~~~~~g~~~----~~~~~~~~-----~~r~~~~~~~~~~~~~~L 82 (222)
T 3sbw_C 12 VVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEED----LKVQHSSY-----RQRARLLKDQLSLGNAAL 82 (222)
T ss_dssp EEETTSCEEEEEECCCCSSCCTTTCEEEEEETTEEEEEEETTEEC----SSSSCGGG-----SSSEEECHHHHTTTEEEE
T ss_pred EEEcCCcEEEEeEecCCCCCCCccEEEEEEECCcEEEEEeCCccc----cccccccc-----cCceEEccccccCCEEEE
Confidence 3479999999999876553 2589999987433221000000 00000000 12333322 2479
Q ss_pred EEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecCCCCceEE
Q psy14542 177 IIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKW 256 (371)
Q Consensus 177 ~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W 256 (371)
.|.+++.+| +|.|+|.+.+. +...... .|.|. .++.......... +..|+.+.|.|.+.|.|.|.+.|
T Consensus 83 ~I~~v~~~D-~G~Y~C~~~~~--~~~~~~~---~l~V~-----~~~~~~~~~~~~~-~~~g~~v~L~C~~~g~P~p~i~W 150 (222)
T 3sbw_C 83 QITDVKLQD-AGVYRCMISYG--GADYKRI---TVKVN-----APYNKINQRILVV-DPVTSEHELTCQAEGYPKAEVIW 150 (222)
T ss_dssp EESSCCGGG-CEEEEEEEESS--SEEEEEE---EEEEE-----BCCCCCEEEEEEE-ETTTTEEEEEEEEEEBSCCEEEE
T ss_pred EEcCccccc-CeEEEEEEEeC--CCceeEE---EEEEE-----CCCCCCCceeeee-ecCCCcEEEEEEecCCCCCeEEE
Confidence 999999999 99999999983 4444444 67776 3332222222123 78899999999999999999999
Q ss_pred EeC-CcccccCCceE---EecceEE---EeccCCCCCeEEEEEEEcCCCCceeEEEEEEecCcc
Q psy14542 257 YKQ-DSPVEESDRIQ---RIGSSLS---ISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKY 313 (371)
Q Consensus 257 ~~~-~~~~~~~~~~~---~~~~~l~---i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~ 313 (371)
+++ +..+....... ..++.+. +..+..+|.|.|+|.|.|..|.....+.|.|..+|.
T Consensus 151 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~d~g~Y~C~a~n~~g~~~~~~~l~v~~~p~ 214 (222)
T 3sbw_C 151 TSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINTTTNEIFYCTFRRLDPEENHTAELVIPELPL 214 (222)
T ss_dssp EETTCCEECCEEEEEECC----CEEEEEEEEEECCTTCEEEEEEEETTTTEEEEEEEECCCC--
T ss_pred EECCCceecCccceEEEcCCCCCEEEEEEEEEeccCCcEEEEEEEeCccceeeEEEEEecCCcc
Confidence 998 54444332221 1122222 224567899999999999999999999999987776
No 190
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Probab=99.85 E-value=6e-20 Score=143.14 Aligned_cols=165 Identities=21% Similarity=0.393 Sum_probs=115.7
Q ss_pred EEEeccCcEEEEEEecCC-CCCCeeEEEeCCEEEeeC----CeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEEEEEEec
Q psy14542 21 VVVDVGHRIELHCRVSPK-RLSSAKAWLKDGLVLRRN----SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGG 95 (371)
Q Consensus 21 ~~~~~G~~v~l~C~~~~~-~~~~~~~W~~~~~~~~~~----~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~ 95 (371)
..+.+|++++|.|.+... .|...+.|+|++..+... ....|.|. +.+|+|.|+|.+.+. ....+.|.|.
T Consensus 8 ~~v~~G~~v~l~C~~~~~~~p~~~~~W~k~~~~l~~~~~~~~~~~l~i~--~~~d~G~Y~C~~~n~---~~~~~~l~V~- 81 (184)
T 3b5h_A 8 TVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPGQKTEFKVD--SDDQWGEYSCVFLPE---PMGTANIQLH- 81 (184)
T ss_dssp EEEEETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTCCCSEEEEEEC--GGGCCEEEEEEEEST---TSCEEEEEEC-
T ss_pred EEEecCCCEEEEEECCCCCCCceEEEEEeCCEEeecccccCCcEEEEEe--chhhCeEEEEEEECC---cCcEEEEEEe-
Confidence 468899999999965433 223389999999988765 34467666 689999999999972 3356677777
Q ss_pred ceeeEecCCc-eeeecCCcEEEEEEecCCCCCceEEEee---CCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEe
Q psy14542 96 ELVEIASSNQ-VVVDVGHRIELHCRVSPKRLSSAKAWLK---DGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHML 171 (371)
Q Consensus 96 ~~~~~~~~~~-~~~~~g~~v~l~C~~~~~~~~~~v~W~~---~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~ 171 (371)
.+|.+...+. ..+.+|+.+.|.|.+.+.|..+.+.|++ ++..+.... ..+.|......
T Consensus 82 ~~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~i~W~~~~~~~~~~~~~~------------~~~~~~~~~~~------ 143 (184)
T 3b5h_A 82 GPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNG------------SESRFFVSSSQ------ 143 (184)
T ss_dssp CSCCCEESCSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTT------------GGGTEEEEEET------
T ss_pred cCCceeecCCCcEEcCCCcEEEEEEECCCCCCCeEEEEEcCCCCCEEeecC------------CCCEEEEEecC------
Confidence 4555554443 3458999999999999988338999999 444333211 01111111100
Q ss_pred ccceEEEEEee-cCCccceeEEEeeccccceeeeeeccceeeee
Q psy14542 172 SSGELIIHQVD-ESDRYRSYQCRGVNKLTGASLLSVNRGRLSLT 214 (371)
Q Consensus 172 ~~~~l~i~~~~-~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~ 214 (371)
....|.|.++. ..| .|.|+|.+.|. .|...... .|.|.
T Consensus 144 ~~~~L~i~~v~~~~d-~G~Y~C~a~N~-~g~~~~~~---~l~V~ 182 (184)
T 3b5h_A 144 GRSELHIENLNMEAD-PGQYRCNGTSS-KGSDQAII---TLRVR 182 (184)
T ss_dssp TEEEEEECSCCTTTS-SEEEEEEEEET-TEEEEEEE---EEEEC
T ss_pred CeeEEEEeecccccc-CceEEEEEEeC-CCcceEEE---EEEEe
Confidence 11479999999 899 99999999999 77766665 66664
No 191
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*
Probab=99.85 E-value=3.1e-20 Score=147.78 Aligned_cols=157 Identities=17% Similarity=0.235 Sum_probs=116.5
Q ss_pred EEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEee---------------C----------CeeEEEEccCCc
Q psy14542 14 EMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRR---------------N----------SDEVLVLDRVQR 68 (371)
Q Consensus 14 ~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~---------------~----------~~~~l~i~~~~~ 68 (371)
.+.|.. ..+.+|++++|.|. ..+.+...+.|++++..... . .+++|.|.+++.
T Consensus 3 ~i~~~~-~~v~~G~~v~L~C~-~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~L~i~~v~~ 80 (208)
T 3r4d_A 3 TIEAVP-PQVAEDNNVLLLVH-NLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMITM 80 (208)
T ss_dssp EEEEES-SEEETTCCEEEEEE-CCCSSCSEEEEEESSCCCGGGEEEEEEGGGTEEEECTTCCSSEEECTTSCEEECSCCG
T ss_pred cccCcc-ceeecCCcEEEEEe-CCCCCceEEEeccCCCCCccceEEEEecCCCccccCccccceeEEecCCeEEEccccc
Confidence 344444 67999999999996 55667789999997431110 0 235799999999
Q ss_pred CCCeEEEEEEEcCC-CCeEEEEEEEEecc--eeeEecCCceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeE
Q psy14542 69 EDAGMYQCHVSADD-DSAQMSAQVILGGE--LVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEV 145 (371)
Q Consensus 69 ~d~G~Y~C~~~~~~-~~~~~~~~l~v~~~--~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~ 145 (371)
+|+|.|+|.+.+.. +.....+.|.|... .+.+...... +..|+.+.|.|.+.+.+ +.+.|++++..+.....
T Consensus 81 ~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~~~~-~~~g~~v~l~C~~~~~p--p~i~W~~~g~~l~~~~~-- 155 (208)
T 3r4d_A 81 KDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTT-VKELDSVTLTCLSNDIG--ANIQWLFNSQSLQLTER-- 155 (208)
T ss_dssp GGCEEEEEEEECSSCEEEEEEEEEEEECCCCCCEEEESCSS-CCTTCCEEEEEECSCTT--CEEEEEETTEECCCCSS--
T ss_pred cCCeEEEEEEEcccCceeEEEEEEEeccCCCCCEEecCCce-EeeCCCEEEEEECCCCC--CceEEEECCEeCCCCCC--
Confidence 99999999999874 44566777888632 2444444444 68899999999998854 59999999988765432
Q ss_pred EEEcccCcCCCeeEEEEEeCCceeEe-ccceEEEEEeecCCccceeEEEeeccccce
Q psy14542 146 LVLDRVQREDAGMYQCHIEDGKYHML-SSGELIIHQVDESDRYRSYQCRGVNKLTGA 201 (371)
Q Consensus 146 ~~~~~~~~~~~g~y~~~~~~~~~~~~-~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~ 201 (371)
+.+. .+..|.|.++..+| .|.|+|.+.|. .|.
T Consensus 156 ----------------------~~~~~~~~~L~i~~v~~~d-~G~Y~C~a~N~-~g~ 188 (208)
T 3r4d_A 156 ----------------------MTLSQNNSILRIDPIKRED-AGEYQCEISNP-VSV 188 (208)
T ss_dssp ----------------------EEEETTTTEEEESSCCGGG-CEEEEEEEECT-TCC
T ss_pred ----------------------eEEcCCCCEEEEeccCHHh-CeEEEEEEecC-CCc
Confidence 1222 12679999999999 99999999998 554
No 192
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.85 E-value=1.8e-21 Score=167.53 Aligned_cols=181 Identities=19% Similarity=0.201 Sum_probs=137.7
Q ss_pred cccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC-------CeeEEEEccCCcCCCe-EEEEEEE
Q psy14542 8 KSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN-------SDEVLVLDRVQREDAG-MYQCHVS 79 (371)
Q Consensus 8 ~~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~-------~~~~l~i~~~~~~d~G-~Y~C~~~ 79 (371)
..+|.+...|.. ..+.+|+.+.|.|.+ .+.|.+.+.|++++..+... ...+|.|.+++.+|+| .|+|.+.
T Consensus 156 c~~P~i~~~~~~-~~v~~G~~v~L~C~~-~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~~Y~C~a~ 233 (347)
T 2ifg_A 156 CGVPTLKVQVPN-ASVDVGDDVLLRCQV-EGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLANVTSDLNRKNVTCWAE 233 (347)
T ss_dssp CCCCEEEEECCS-SCCBTTCCEEEEEEE-ECSSCCCCCEEESCCCSSEEECCCCCSSEEEEEEESCCSTTTTCCEEECCE
T ss_pred CCCCceeccCCc-eEEeCCCcEEEEEEE-ecCCCCEEEEEcCCceeecccccceecccceEEEeeCChHHCCCeEEEEEE
Confidence 457888888887 889999999999955 56778899999987543211 6789999999999999 9999999
Q ss_pred cCCCCeEEEEEEEEecceeeEecCCceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeE
Q psy14542 80 ADDDSAQMSAQVILGGELVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMY 159 (371)
Q Consensus 80 ~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y 159 (371)
+..|.....+.|.|. .+|.+ ......+|+.++|.|.+.+.|. +.++|++++..+.........+....
T Consensus 234 n~~g~~~~~~~l~V~-~~P~i---~~~~~~~g~~v~l~C~~~g~P~-p~i~W~~~g~~l~~~~~~~~~~~~~~------- 301 (347)
T 2ifg_A 234 NDVGRAEVSVQVNVS-FPASV---QLHTAVEMHHWCIPFSVDGQPA-PSLRWLFNGSVLNETSFIFTEFLEPA------- 301 (347)
T ss_dssp ETTEECCEEECCCCB-EEEEE---EECCCEESSSEEEEEEEEEESC-CEEEEEETTEECCCCSSEEEEECCCC-------
T ss_pred cCCCCEEEEEEEEEc-CCCee---eeccCccCceEEEEEEeeecCC-CcEEEEeCCEECCCCcceeeEEEeec-------
Confidence 988877888888887 55554 1111257999999999999887 89999999998875432221111100
Q ss_pred EEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeee
Q psy14542 160 QCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLT 214 (371)
Q Consensus 160 ~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~ 214 (371)
......++.|.|.+++.+| +|.|+|.|.|. .|....+. .+.|.
T Consensus 302 -------~~~~~~~~~L~I~~v~~~d-~G~Y~C~a~N~-~G~~~~~~---~l~V~ 344 (347)
T 2ifg_A 302 -------ANETVRHGCLRLNQPTHVN-NGNYTLLAANP-FGQASASI---MAAFM 344 (347)
T ss_dssp -------TTCCCEEEEEEESSCCGGG-CEEEEEEEEET-TEEEEEEE---EECSC
T ss_pred -------CCCcccceEEEECCCCccc-CceEEEEEecC-CCceeeEE---EEEec
Confidence 0001123679999999999 99999999999 88777666 67666
No 193
>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A
Probab=99.85 E-value=5.2e-20 Score=145.61 Aligned_cols=162 Identities=16% Similarity=0.270 Sum_probs=115.0
Q ss_pred ecccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEee---------C-CeeEEEEccCCcCCCeEEEE
Q psy14542 7 VKSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRR---------N-SDEVLVLDRVQREDAGMYQC 76 (371)
Q Consensus 7 v~~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~---------~-~~~~l~i~~~~~~d~G~Y~C 76 (371)
+.++|.|...|.. .+.+|++++|.|... .+.+.+.|+|+|..+.. . ....|.|.+++.+|+|.|+|
T Consensus 5 ~~~~P~i~~~p~~--~v~~G~~v~L~C~~~--~~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C 80 (201)
T 1nkr_A 5 VHRKPSLLAHPGP--LVKSEETVILQCWSD--VMFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRC 80 (201)
T ss_dssp --CCCEEEEESCS--EEETTCCEEEEEEES--SCCSEEEEEEESSSCEEEEEECEEETTEEEEEEEESSCCGGGCEEEEE
T ss_pred cCCCCeEEEEcCC--ccCCCCcEEEEEecc--CCCCEEEEEECCCcCCcceeeeecCCCCceEEEEeccCCcccCeEEEE
Confidence 3567888888874 789999999999754 36778999998764321 1 45789999999999999999
Q ss_pred EEEcCC-----CCeEEEEEEEEec--ceeeEecCCceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEc
Q psy14542 77 HVSADD-----DSAQMSAQVILGG--ELVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLD 149 (371)
Q Consensus 77 ~~~~~~-----~~~~~~~~l~v~~--~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~ 149 (371)
.+.+.. ...+..+.|.|.+ .+|.+...+...+.+|+.++|.|.+.+. . +.+.|+|++..+..........
T Consensus 81 ~a~~~~~~~~~~~~s~~~~l~V~~~~~~p~i~~~p~~~v~~G~~v~L~C~~~~~-~-~~~~w~k~g~~~~~~~~~~~~~- 157 (201)
T 1nkr_A 81 YGSVTHSPYQVSAPSDPLDIVIIGLYEKPSLSAQPGPTVLAGENVTLSCSSRSS-Y-DMYHLSREGEAHERRLPAGPKV- 157 (201)
T ss_dssp EEEBTTBTTCCCCCCCCEEEEEECSSCCCEEEEESCSEECTTCEEEEEEEESSC-C-SEEEEEETTCSSCEEEECEEEE-
T ss_pred eEecCCCCccccCCCCCEEEEeeccCCCCceecCCCCccCCCCeEEEEEeCCCC-C-ceEEEEECCcccCccccccccc-
Confidence 997642 1234556677763 2455655555566899999999999864 3 6899999987554321100000
Q ss_pred ccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeecc
Q psy14542 150 RVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNK 197 (371)
Q Consensus 150 ~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~ 197 (371)
.+. .+..|.|.+++ | +|.|+|.+.+.
T Consensus 158 ---------------~~~----~~~~L~i~~v~--d-~G~Y~C~a~~~ 183 (201)
T 1nkr_A 158 ---------------NGT----FQADFPLGPAT--H-GGTYRCFGSFH 183 (201)
T ss_dssp ---------------TTE----EEEEEEEEECC--S-CEEEEEEEEET
T ss_pred ---------------CCc----eEEEEEeCCcC--C-CeeEEEEEEcC
Confidence 000 12679999998 8 99999999865
No 194
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Probab=99.85 E-value=2.7e-20 Score=145.12 Aligned_cols=148 Identities=15% Similarity=0.275 Sum_probs=114.0
Q ss_pred EEEeccCcEEEEEEecCCCCCCeeEEEeCCEE--Eee------------------------CCeeEEEEccCCcCCCeEE
Q psy14542 21 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLV--LRR------------------------NSDEVLVLDRVQREDAGMY 74 (371)
Q Consensus 21 ~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~--~~~------------------------~~~~~l~i~~~~~~d~G~Y 74 (371)
+.+.+|++++|.|.+ .+.+.+.+.|++++.. +.. ....+|.|.+++.+|+|.|
T Consensus 5 v~~~~G~~v~L~C~~-~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~i~~v~~~D~G~Y 83 (184)
T 2ny1_B 5 VLGKKGDTVELTCTA-SQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTY 83 (184)
T ss_dssp EEEETTSCEEECCBC-SSSSCCCEEEEETTCCEEEEEETTEEEECSCTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEE
T ss_pred EEEeCCCCEEEEEEE-cCCCceEEEEEeCCccceEEecCceEecCChhhCCccccccccccCCeEEEEEecCCHHHCEEE
Confidence 678999999999954 4777889999998752 210 0255699999999999999
Q ss_pred EEEEEcCCCCeEEEEEEEEecceeeEecCCceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcC
Q psy14542 75 QCHVSADDDSAQMSAQVILGGELVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQRE 154 (371)
Q Consensus 75 ~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~ 154 (371)
+|.+.+.. ..+.|.|. . +...+...+.+|+.++|.|.+.+.|. +.+.|++++..+..
T Consensus 84 ~C~~~~~~----~~~~l~V~-~---~~~~~~~~v~~g~~~~l~C~~~~~p~-~~v~W~~~~~~~~~-------------- 140 (184)
T 2ny1_B 84 ICEVEDQK----EEVQLLVF-G---LTANSDTHLLQGQSLTLTLESPPGSS-PSVQCRSPRGKNIQ-------------- 140 (184)
T ss_dssp EEEETTEE----EEEEEEEE-E---EEESSCSEEETTCCEEEEEECCTTCC-CEEEEECTTSCEEE--------------
T ss_pred EEEEEcCC----CcEEEEEE-E---ecCCCCceeecCCCEEEEEEcCCCCC-CEEEEEeCCCcccc--------------
Confidence 99997653 35666666 2 22344445689999999999988776 89999998764422
Q ss_pred CCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeee
Q psy14542 155 DAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLT 214 (371)
Q Consensus 155 ~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~ 214 (371)
....|.|.+++.+| .|.|+|.+.+. .+...... .|.|.
T Consensus 141 -----------------~~~~L~i~~v~~~d-~G~Y~C~a~n~-~~~~~~~~---~l~V~ 178 (184)
T 2ny1_B 141 -----------------GGKTLSVSQLELQD-SGTWTCTVLQN-QKKVEFKI---DIVVL 178 (184)
T ss_dssp -----------------ESSEEEESSCCGGG-CEEEEEEEEET-TEEEEEEE---EEEEE
T ss_pred -----------------CceEEEEecCCcCC-CeEEEEEEEEC-CceEEEEE---EEEEE
Confidence 12689999999999 99999999987 66666666 77766
No 195
>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}
Probab=99.84 E-value=1.1e-19 Score=142.57 Aligned_cols=147 Identities=18% Similarity=0.258 Sum_probs=107.3
Q ss_pred EEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEe---e-----------C----------CeeEEEEccCCcCCCeEEEE
Q psy14542 21 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLR---R-----------N----------SDEVLVLDRVQREDAGMYQC 76 (371)
Q Consensus 21 ~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~---~-----------~----------~~~~l~i~~~~~~d~G~Y~C 76 (371)
+.+.+|++++|.|.+....+...+.|++++..+. . . .+++|.|.+++.+|+|.|+|
T Consensus 8 v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C 87 (193)
T 2if7_A 8 VNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYSLQLSNLKMEDTGSYRA 87 (193)
T ss_dssp EEEETTSCEEECCCCCCCSCCCEEEEEETTEEEEEEECCSSSCCEEEECCHHHHTTEEECTTCCEEECSCCGGGCEEEEE
T ss_pred EEEEecCeEEEeccCCCcccccEEEEEECCEEEEEEecccCCCCceeecCccccccEEECCCeEEEECCCCcccCceEEE
Confidence 7899999999999665445567899999876542 0 0 24679999999999999999
Q ss_pred EEEcCCCCeEEEEEEEEecce--eeEecCCceeeecCC-cEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCc
Q psy14542 77 HVSADDDSAQMSAQVILGGEL--VEIASSNQVVVDVGH-RIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQR 153 (371)
Q Consensus 77 ~~~~~~~~~~~~~~l~v~~~~--~~~~~~~~~~~~~g~-~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~ 153 (371)
.+.+..+.....+.|.|...+ |.+..... ....|. .++|.|.+.+.++.+.+.|++++..+...
T Consensus 88 ~~~~~~~~~~~~~~L~V~~~~~~p~i~~~~~-~~~~g~~~v~L~C~~~g~~p~p~i~W~~~g~~l~~~------------ 154 (193)
T 2if7_A 88 QISTKTSAKLSSYTLRILRQLRNIQVTNHSQ-LFQNMTCELHLTCSVEDADDNVSFRWEALGNTLSSQ------------ 154 (193)
T ss_dssp EEECSSCEEEEEEEEEEECCCEEEEEEECCC----CSSEEEEEEEEEESCCTTCEEEEEETTEEEESS------------
T ss_pred EEEecCCCeEEEEEEEEEccCCCCeEecCce-eecCCCceEEEEEEEecCCCceEEEEEeCCEEcCCC------------
Confidence 999887766677888887432 33333321 123455 89999999986544899999998765322
Q ss_pred CCCeeEEEEEeCCceeEeccceEEEEEeecC-CccceeEEEeecccccee
Q psy14542 154 EDAGMYQCHIEDGKYHMLSSGELIIHQVDES-DRYRSYQCRGVNKLTGAS 202 (371)
Q Consensus 154 ~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~-d~~g~y~C~~~~~~~~~~ 202 (371)
..|.|.....+ | .|.|+|.|.|. .+..
T Consensus 155 --------------------~~l~i~~~~~~~d-~G~Y~C~a~N~-~g~~ 182 (193)
T 2if7_A 155 --------------------PNLTVSWDPRISS-EQDYTCIAENA-VSNL 182 (193)
T ss_dssp --------------------SEEEEEECTTTCS-CCEEEEEEEET-TEEE
T ss_pred --------------------CeEEEEeccCcCC-CCcEEEEEECC-CCcc
Confidence 34666555554 7 99999999998 5554
No 196
>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*
Probab=99.84 E-value=1.9e-20 Score=149.62 Aligned_cols=184 Identities=14% Similarity=0.186 Sum_probs=120.2
Q ss_pred ecCCceeeecCCcEEEEEEecCCCCCceEEEeeC--CEEeeeCCeeEEEEccc---CcCCCeeEEEEEeCCceeEeccce
Q psy14542 101 ASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKD--GLVLRRNSDEVLVLDRV---QREDAGMYQCHIEDGKYHMLSSGE 175 (371)
Q Consensus 101 ~~~~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~--~~~~~~~~~~~~~~~~~---~~~~~g~y~~~~~~~~~~~~~~~~ 175 (371)
...+...+.+|++++|.|.+.+.+. +.+.|++. +.... ..+... .....+.|.... ...+..
T Consensus 5 ~~~~~~~v~~G~~v~L~C~~~~~~~-~~v~W~k~~~~~~~~------~~~~~~~~~~~~~~~r~~~~~------~~~~~~ 71 (213)
T 3mj8_L 5 TQPPLVSVALGQKATITCSGDKLSD-VYVHWYQQKAGQAPV------LVIYEDNRRPSGIPDHFSGSN------SGNMAT 71 (213)
T ss_dssp BCCSEEEEETTSCEEEEEECSSTTT-SCEEEEEECTTSCCE------EEEBTTTBCCTTSCTTEEEEE------ETTEEE
T ss_pred EeCCcEEEeCCCCEEEEEEcCCCCC-ceEEEEEECCCCCcE------EEEEECCccCCCccCcEEEEe------cCCEEE
Confidence 3344444589999999999997776 89999983 21110 111100 001112222111 112357
Q ss_pred EEEEEeecCCccceeEEEeeccccc---eeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecC-CC
Q psy14542 176 LIIHQVDESDRYRSYQCRGVNKLTG---ASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGN-PL 251 (371)
Q Consensus 176 l~i~~~~~~d~~g~y~C~~~~~~~~---~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~ 251 (371)
|.|.+++.+| +|.|+|.+.+. .+ ...... .|.|..... .+|.+...+.... +..|+.+.|.|.+.+. |+
T Consensus 72 L~I~~v~~~D-~G~Y~C~~~~~-~~~~~~~~~~~---~l~V~~~~~-~~P~i~~~~~~~~-~~~g~~v~l~C~~~g~~p~ 144 (213)
T 3mj8_L 72 LTISKAQAGD-EADYYCQSWDG-TNSAWVFGSGT---KVTVLGQPN-AAPSVTLFPPSSE-ELKTNQATLVCMINGFYPA 144 (213)
T ss_dssp EEESSCCGGG-CEEEEEEEEET-TTTEEEEBCCE---EEEEECSCC-BCCEEEEECCCHH-HHTTTEEEEEEEEEEEBSS
T ss_pred EEECCCChhh-CEEEEEEeccC-CcceeEEcCce---EEEEeCCCC-CCCeEEccCCCcc-cccCCcEEEEEEeeceeCC
Confidence 9999999999 99999999988 54 222233 566653211 4555655544444 5589999999999985 44
Q ss_pred -CceEEEeCCcccccCC---------ceEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEE
Q psy14542 252 -PTIKWYKQDSPVEESD---------RIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQL 304 (371)
Q Consensus 252 -~~v~W~~~~~~~~~~~---------~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~ 304 (371)
+.+.|+++|..+..+. ......+.|.|..+..+|+|.|+|.|.|..+....++
T Consensus 145 ~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~ 207 (213)
T 3mj8_L 145 DVAVTWEADGTPITQGVKTTQPSKSDSKYMATSYLTMTADAWKSRNTFICKVTHGGNTVEKSL 207 (213)
T ss_dssp CCEEEEEETTEEECTTEEECCCEEETTEEEEEEEEEEESHHHHSCSCEEEEEEETTEEEEEEE
T ss_pred CeEEEEEcCCcccCCCcccCCcCccCCcEEEEEEEEEeHHHcCCCCEEEEEEEECCccEEeee
Confidence 4899999999876431 1112235689999999999999999999987665554
No 197
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*
Probab=99.84 E-value=2.7e-20 Score=148.67 Aligned_cols=177 Identities=16% Similarity=0.159 Sum_probs=116.9
Q ss_pred CCCcEEEecc--CcEEEEEEecCCCCCCeeEEEeC---CEEEeeC------CeeEEEEccCCcCCCeEEEEEEEcCCCCe
Q psy14542 17 PSGQVVVDVG--HRIELHCRVSPKRLSSAKAWLKD---GLVLRRN------SDEVLVLDRVQREDAGMYQCHVSADDDSA 85 (371)
Q Consensus 17 p~~~~~~~~G--~~v~l~C~~~~~~~~~~~~W~~~---~~~~~~~------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~ 85 (371)
|.. +.+.+| ++++|.|.+. + |.+.+.|+++ +..+... ....|.|.+++.+|+|.|+|.+.+..+..
T Consensus 14 p~~-v~v~eG~~~~v~L~C~~~-~-p~~~v~w~~~~~~g~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~n~~~~~ 90 (213)
T 2x1w_L 14 HGV-VYITENKNKTVVIPCLGS-I-SNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAGMVFCEAKINDESY 90 (213)
T ss_dssp CEE-EEECCSTTCEEEECCCBS-S-TTCCEEEEEETTTEEECCCSSSCEEETTTEEEEEGGGTTTCSEEEEEEC----CE
T ss_pred ceE-EEEecCCCccEEEeeccC-C-CCcEEEEEhhcCCCccccCCCcccccCCccEEEccCChhcCceEEEEEEECCeeE
Confidence 344 789999 9999999654 3 6688999884 5554433 34579999999999999999998854443
Q ss_pred E-EEEEEEEec-ceeeEecCC-ce-eeecCCcEEEEEEecCCCC-CceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEE
Q psy14542 86 Q-MSAQVILGG-ELVEIASSN-QV-VVDVGHRIELHCRVSPKRL-SSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQ 160 (371)
Q Consensus 86 ~-~~~~l~v~~-~~~~~~~~~-~~-~~~~g~~v~l~C~~~~~~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~ 160 (371)
. ..+.|.|.. .++.+...+ .. .+.+|+.++|.|.+.+.+. ++.+.|++++..+.......... ..... +
T Consensus 91 ~s~~~~l~v~~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~i~W~~~g~~~~~~~~~~~~~-~~~~~--~--- 164 (213)
T 2x1w_L 91 QSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDL-KTQSG--S--- 164 (213)
T ss_dssp ECCCEEEEECBCCEEEEEEESCSCEEEETTCCEEEEEEEEECTTBCCEEEEECSCSSCCSEEEEEEEE-CCCSS--C---
T ss_pred EEEEEEEEEeCCcccceEEcCCCCeEEcCCCCEEEEEEEECCCCCceEEEEEecCCccceEEEecccc-ccccC--c---
Confidence 2 226666642 233333333 32 5589999999999987543 25899999887543210000000 00000 0
Q ss_pred EEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeee
Q psy14542 161 CHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLT 214 (371)
Q Consensus 161 ~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~ 214 (371)
. .....+.|.|.+++.+| +|.|+|.+.|. .|...... .|.|.
T Consensus 165 ------~-~~~~~~~L~I~~v~~~D-~G~Y~C~a~N~-~g~~~~~~---~l~V~ 206 (213)
T 2x1w_L 165 ------E-MKKFLSTLTIDGVTRSD-QGLYTCAASSG-LMTKKNST---FVRVH 206 (213)
T ss_dssp ------S-CEEEEEEEEESSCCGGG-CEEEEEEEECS-SCEEEEEE---EEEEE
T ss_pred ------c-ceeeeEEEEECCCCccc-CEEEEEEEecC-CCcEEEEE---EEEEe
Confidence 0 01112579999999999 99999999999 77777766 88887
No 198
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Probab=99.84 E-value=1e-20 Score=153.13 Aligned_cols=192 Identities=21% Similarity=0.336 Sum_probs=122.9
Q ss_pred CceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEe-----CCceeEeccceEEE
Q psy14542 104 NQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIE-----DGKYHMLSSGELII 178 (371)
Q Consensus 104 ~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~-----~~~~~~~~~~~l~i 178 (371)
....+.+|+.+.|.|.+.+.+..+.+.|++++...... .+. .. ......|..... ...+.+..++.|.|
T Consensus 8 ~~~~v~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~---~~~-~~--~~~~~~~~~r~~~~~~~~~~~~~~~~~~L~i 81 (231)
T 2pet_A 8 PLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARP---RLA-SA--EMQGSELQVTMHDTRGRSPPYQLDSQGRLVL 81 (231)
T ss_dssp SEEEEETTCCEEECCCCBSCCSEEEEEEEEECTTCCCC---EEE-EE--EEETTEEEEEECCCSCCSSCCEECTTCCEEE
T ss_pred CcEEEEcCCCEEEecccCCCCCceEEEEEEeCCCceeE---EEE-ec--cccCCccccccccccccccccccCCCceEEE
Confidence 33445899999999999887633799999865321100 000 00 000001111110 01111444466999
Q ss_pred EEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeE-EEEEEe-ecCCCCceEE
Q psy14542 179 HQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESV-ILPCSA-QGNPLPTIKW 256 (371)
Q Consensus 179 ~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~-~l~C~~-~~~p~~~v~W 256 (371)
.+++.+| +|.|+|.+.+...+...... .|.|...+ ..|.+...+.... +..|+.+ .|.|.+ .+.|.+.+.|
T Consensus 82 ~~v~~~D-~G~Y~C~~~~~~~~~~~~~~---~l~V~~~p--~~~~~~~~~~~~~-~~~g~~~~~l~C~~~~~~p~p~i~W 154 (231)
T 2pet_A 82 AEAQVGD-ERDYVCVVRAGAAGTAEATA---RLNVFAKP--EATEVSPNKGTLS-VMEDSAQEIATCNSRNGNPAPKITW 154 (231)
T ss_dssp SSCCGGG-CEEEEEEEECGGGCEEEEEE---EEEEEBCC--CCCEEEECCSSCC-TTCCSEEEEEEEEEEEEBSCCEEEE
T ss_pred cccCccc-CceEEEEEEecCCCceEEEE---EEEEEecC--CCcEEecCCccee-ecCCCceEEEEEEeECcccCCEEEE
Confidence 9999999 99999999988325555555 67776322 2244444444444 6688887 999999 8899999999
Q ss_pred EeCCcccccCC----ceEEe-------------cceEEEeccCCCCCeEEEEEEEcC-----CCC-ceeEEEEEE
Q psy14542 257 YKQDSPVEESD----RIQRI-------------GSSLSISHVEESDSGVWNCVANNS-----EGQ-DKMQLFIQY 308 (371)
Q Consensus 257 ~~~~~~~~~~~----~~~~~-------------~~~l~i~~~~~~d~G~Y~C~a~n~-----~g~-~~~~~~l~v 308 (371)
++++..+.... ++... .+.|.|.....+|+|.|+|.|.|. .|. .+..+.|.|
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~dd~g~Y~C~a~n~~~~~~~~~~~s~~~~l~V 229 (231)
T 2pet_A 155 YRNGQRLEVPVEMNPEGYMTSRTVREASGLLSLTSTLYLRLRKDDRDASFHCAAHYSLPEGRHGRLDSPTFHLTL 229 (231)
T ss_dssp EETTEECCCCSSCCSSEEEEEEEEECTTSCEEEEEEEEEECCGGGGGCEEEEEEEEECGGGCEEEEECCCEECCC
T ss_pred EECCccCccccccccceeecceeEecCCCeEEEEEEEEEecchhhCCceEEEEEEcCCcccccccccccceEEEE
Confidence 99999876654 33211 156888866677799999999994 444 445555544
No 199
>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A
Probab=99.84 E-value=1.6e-20 Score=146.48 Aligned_cols=144 Identities=24% Similarity=0.390 Sum_probs=107.5
Q ss_pred EEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeCCeeEEEEcc-CCcCCCeEEEEEEEcCCCCeEEEEEEEEecceee
Q psy14542 21 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDR-VQREDAGMYQCHVSADDDSAQMSAQVILGGELVE 99 (371)
Q Consensus 21 ~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~l~i~~-~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~ 99 (371)
....+|+++.|.|.+. + + +.+.|+|+|..+....+.+|.|.+ ++.+|+|.|+|.+.|..|.....+.+.|....+.
T Consensus 9 ~v~~~G~~v~L~C~~~-~-~-~~i~W~k~g~~l~~~~~~~L~I~~~~~~~D~G~Y~C~a~n~~g~~~~~~~~~v~~~~~~ 85 (186)
T 1jbj_A 9 KVSISGTSVELTCPLD-S-D-ENLKWEKNGQELPQKHDKHLVLQDFSEVEDSGYYVCYTPASNKNTYLYLKARVGSADDA 85 (186)
T ss_dssp EEEEETTEEEEECSSC-C-C-TTCEEEETTEEECSCCCSEEEEESCCTTTSCEEEEEECSSCCCCCCEEECCCCCSCCCC
T ss_pred EEEeCCcEEEEEEeCC-C-C-CceEEEECCEECCCCCCCEEEECCCCccccCEEEEEEEEeCCCcEEEEEEEEEeccccc
Confidence 3457899999999654 3 3 349999999999865677899999 9999999999999998887655555555421111
Q ss_pred E-----------------e---c--CCce---eeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcC
Q psy14542 100 I-----------------A---S--SNQV---VVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQRE 154 (371)
Q Consensus 100 ~-----------------~---~--~~~~---~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~ 154 (371)
. . . .... .+.+|+.+.|.|.+ |. +.++|+|++..+.....
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~l~C~~---p~-p~i~W~k~g~~i~~~~~----------- 150 (186)
T 1jbj_A 86 KKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLTCGL---TD-KTIKWLKDGSIISPLNA----------- 150 (186)
T ss_dssp CCCCCCCCCCSCCSSSTTCCSCCCCSSCCEECCCSSSCEEEEECSS---SC-SCEEEEETTEECCCSSC-----------
T ss_pred ccccccccccccCCccccccccccccccccceecCCCCeEEEEeeC---CC-CeEEEEECCEECcccCC-----------
Confidence 0 0 0 0001 12489999999998 44 79999999998764311
Q ss_pred CCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccce
Q psy14542 155 DAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGA 201 (371)
Q Consensus 155 ~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~ 201 (371)
....|.|.++..+| +|.|+|.|.|. .|.
T Consensus 151 -----------------~~~~L~i~~v~~~D-~G~Y~C~a~N~-~g~ 178 (186)
T 1jbj_A 151 -----------------TKNTWNLGNNAKDP-RGTYQCQGAKE-TSN 178 (186)
T ss_dssp -----------------CSSCCEEEETTSCC-EEEEEEEESSC-EEE
T ss_pred -----------------CcceEEECCCCcCc-CEEEEEEEEcC-cCC
Confidence 12679999999999 99999999998 554
No 200
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}
Probab=99.84 E-value=1.6e-20 Score=154.04 Aligned_cols=174 Identities=19% Similarity=0.264 Sum_probs=116.1
Q ss_pred cEEEeccCcEEEEEEecC--CCCCCeeEEEeCCEEE-----ee----------------------C-----------Cee
Q psy14542 20 QVVVDVGHRIELHCRVSP--KRLSSAKAWLKDGLVL-----RR----------------------N-----------SDE 59 (371)
Q Consensus 20 ~~~~~~G~~v~l~C~~~~--~~~~~~~~W~~~~~~~-----~~----------------------~-----------~~~ 59 (371)
++.+.+|++++|.|.+.. ..+.+.+.|++++... .. . ...
T Consensus 11 ~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 90 (250)
T 2fbo_J 11 EVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASVANLAAP 90 (250)
T ss_dssp EEEECTTSCEEECCEEEECSCCSCCEEEEEEEEETTEEEEEEEEEECCCBTTBCCCTTSEEEEECGGGTTTEECSCTTSC
T ss_pred ceEEecCCeEEEEEEeEcCCCCCceEEEEEeCCCCCccEEEEeeccccccccccccccccccccCCCcCceEEeccCCcc
Confidence 388999999999996542 2567889999976421 10 0 135
Q ss_pred EEEEccCCcCCCeEEEEEEEcCCCCe-----EEEEEEEEecc--eeeEecCCc--eeeecCCcEEEEEEecCCCCCceEE
Q psy14542 60 VLVLDRVQREDAGMYQCHVSADDDSA-----QMSAQVILGGE--LVEIASSNQ--VVVDVGHRIELHCRVSPKRLSSAKA 130 (371)
Q Consensus 60 ~l~i~~~~~~d~G~Y~C~~~~~~~~~-----~~~~~l~v~~~--~~~~~~~~~--~~~~~g~~v~l~C~~~~~~~~~~v~ 130 (371)
+|.|.+++.+|+|.|+|.+.+..+.. ...+.|.|... ++.+..... ..+.+|+.+.|.|.+.+.+. +.+.
T Consensus 91 ~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~v~~g~~v~L~C~~~g~p~-p~v~ 169 (250)
T 2fbo_J 91 TLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCAN-ANVT 169 (250)
T ss_dssp CEEECSCCGGGCEEEEEEEECTTCCSGGGEEEEEEEEEETTTSCCSCCEECCCSEEECCTTCCEEECCCEESCTT-CEEE
T ss_pred eEEEeeCChhhCeEEEEEeccCccCCcccccceeEEEEEeccCCCCeEEEecCceEEecCCCcEEEEEEecCCCC-CeeE
Confidence 89999999999999999999876643 45788888743 333333222 33367999999999999887 7999
Q ss_pred EeeCCEEeeeCCee--EEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeecc
Q psy14542 131 WLKDGLVLRRNSDE--VLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNK 197 (371)
Q Consensus 131 W~~~~~~~~~~~~~--~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~ 197 (371)
|++++..+...... ........ .. ..+.......+........|.|.+++.+| .|.|+|.|.|.
T Consensus 170 W~k~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~L~i~~v~~~D-~G~Y~C~a~N~ 235 (250)
T 2fbo_J 170 WYTGPTFFENYETGTYQPLANKNQ-FG-ITWFSSEIAGRASFSGARNLVIRAAKITD-AGRVWCELATG 235 (250)
T ss_dssp EEEEEECSSCSSSCEEEEEEEECT-TS-CEEECTTTTTSEEEETTTEEEECSCCGGG-CEEEEEEEESS
T ss_pred EEeCCCcccccccCcceeEeccCC-CC-ccccCceEecccccCCccEEEEecCCccc-CEEEEEEecCC
Confidence 99998876543211 11111000 00 00000000112222234689999999999 99999999995
No 201
>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*
Probab=99.84 E-value=7.4e-20 Score=146.20 Aligned_cols=172 Identities=16% Similarity=0.239 Sum_probs=117.6
Q ss_pred eEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeC--C-E--EEe------------------eCCeeEEEEccCCc
Q psy14542 12 SIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKD--G-L--VLR------------------RNSDEVLVLDRVQR 68 (371)
Q Consensus 12 ~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~--~-~--~~~------------------~~~~~~l~i~~~~~ 68 (371)
.+...| . +.+.+|++++|.|.+. +.+.+.+.|+|. + . .+. .....+|.|.+++.
T Consensus 3 ~v~~~~-~-~~v~~G~~v~L~C~~~-~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~ 79 (213)
T 3mj8_L 3 TLTQPP-L-VSVALGQKATITCSGD-KLSDVYVHWYQQKAGQAPVLVIYEDNRRPSGIPDHFSGSNSGNMATLTISKAQA 79 (213)
T ss_dssp CBBCCS-E-EEEETTSCEEEEEECS-STTTSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCG
T ss_pred eEEeCC-c-EEEeCCCCEEEEEEcC-CCCCceEEEEEECCCCCcEEEEEECCccCCCccCcEEEEecCCEEEEEECCCCh
Confidence 344444 4 8899999999999654 678889999982 1 1 110 11567899999999
Q ss_pred CCCeEEEEEEEcCCCC---eEEEEEEEEec---ceeeEecCCce-eeecCCcEEEEEEecCCCC-CceEEEeeCCEEeee
Q psy14542 69 EDAGMYQCHVSADDDS---AQMSAQVILGG---ELVEIASSNQV-VVDVGHRIELHCRVSPKRL-SSAKAWLKDGLVLRR 140 (371)
Q Consensus 69 ~d~G~Y~C~~~~~~~~---~~~~~~l~v~~---~~~~~~~~~~~-~~~~g~~v~l~C~~~~~~~-~~~v~W~~~~~~~~~ 140 (371)
+|+|.|+|.+.+..+. ....+.|.|.. .+|.+...+.. .+..|+.++|.|.+.+.++ ++.+.|++++..+..
T Consensus 80 ~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~ 159 (213)
T 3mj8_L 80 GDEADYYCQSWDGTNSAWVFGSGTKVTVLGQPNAAPSVTLFPPSSEELKTNQATLVCMINGFYPADVAVTWEADGTPITQ 159 (213)
T ss_dssp GGCEEEEEEEEETTTTEEEEBCCEEEEEECSCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECT
T ss_pred hhCEEEEEEeccCCcceeEEcCceEEEEeCCCCCCCeEEccCCCcccccCCcEEEEEEeeceeCCCeEEEEEcCCcccCC
Confidence 9999999999988762 34456666662 33444433322 2257999999999988533 259999999998865
Q ss_pred CCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeee
Q psy14542 141 NSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLL 204 (371)
Q Consensus 141 ~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~ 204 (371)
...... ... . ++.+.. .+.|.|.++..+| .|.|+|.+.|. .+....
T Consensus 160 ~~~~~~----~~~-~---------~~~~~~--~s~L~i~~~~~~d-~G~Y~C~a~n~-~~~~~~ 205 (213)
T 3mj8_L 160 GVKTTQ----PSK-S---------DSKYMA--TSYLTMTADAWKS-RNTFICKVTHG-GNTVEK 205 (213)
T ss_dssp TEEECC----CEE-E---------TTEEEE--EEEEEEESHHHHS-CSCEEEEEEET-TEEEEE
T ss_pred CcccCC----cCc-c---------CCcEEE--EEEEEEeHHHcCC-CCEEEEEEEEC-CccEEe
Confidence 321100 000 1 223322 2679999999999 99999999998 544433
No 202
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A
Probab=99.83 E-value=1.8e-19 Score=145.32 Aligned_cols=182 Identities=20% Similarity=0.217 Sum_probs=112.8
Q ss_pred eeeecCCcEEEEEEecCCCC--CceEEEeeCCEEeee----CCeeEEEEcccCcCCCeeEEEEEeCCceeEe------cc
Q psy14542 106 VVVDVGHRIELHCRVSPKRL--SSAKAWLKDGLVLRR----NSDEVLVLDRVQREDAGMYQCHIEDGKYHML------SS 173 (371)
Q Consensus 106 ~~~~~g~~v~l~C~~~~~~~--~~~v~W~~~~~~~~~----~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~------~~ 173 (371)
..+.+|++++|.|.+.+.+. ...+.|+|++..... ... ........... ++.... .+
T Consensus 14 V~v~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~v~~~~~g~--~~~~~~~~~~~---------~r~~~~~~~~~~~~ 82 (226)
T 4f80_A 14 ILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGK--EVEDRQSAPYR---------GRTSILRDGITAGK 82 (226)
T ss_dssp EEEETTSCEEEEEEEESCCCCTTSEEEEEETTTCCEEEEEETTE--ECGGGSCTTTT---------TTEEEECTTGGGTE
T ss_pred EEEEcCCcEEEEEEEECCCCCCceEEEEEECCCCceEEEEeCCe--EcccccCcccc---------ceEEEecccccCCe
Confidence 44589999999999976543 247999997642210 000 00000000000 111111 13
Q ss_pred ceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeec-CCCC
Q psy14542 174 GELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQG-NPLP 252 (371)
Q Consensus 174 ~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~ 252 (371)
..|.|.+++.+| +|.|+|.+.|. .+.... .+.+. .++.......... +..|+.+.|.|.+.| .|.|
T Consensus 83 ~~L~I~~v~~~D-~G~Y~C~a~n~-~~~~~~-----~v~~~-----~~~~~~~~~~~~~-~~~g~~v~l~c~~~g~~P~p 149 (226)
T 4f80_A 83 AALRIHNVTASD-SGKYLCYFQDG-DFYEKA-----LVELK-----VAALGSDLHVDVK-GYKDGGIHLECRSTGWYPQP 149 (226)
T ss_dssp EEEEESSCCGGG-CEEEEEEEEET-TEEEEE-----EEEEE-----EEBCCCCCEEEEE-EEETTEEEEEEEEEEEBSCC
T ss_pred EEEEEeeCchHH-CeeEEEEEECC-CcEEEE-----EEEEe-----eccceecccceee-eccCCceeeEEEeccCCCCC
Confidence 579999999999 99999999987 555443 33443 2222222333334 788999999999987 5999
Q ss_pred ceEEEeCCcccccC-Cce-EE-ecc---eEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEecC
Q psy14542 253 TIKWYKQDSPVEES-DRI-QR-IGS---SLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHG 311 (371)
Q Consensus 253 ~v~W~~~~~~~~~~-~~~-~~-~~~---~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~ 311 (371)
.++|+++++.+... ... .. .++ .+.+..+..+|+|+|+|.|.|..|....++.|.|.++
T Consensus 150 ~i~W~k~~~~~~~~~~~~~~~~~~g~~~v~s~l~v~~~d~G~YtC~a~N~~g~~~~~~~v~v~ep 214 (226)
T 4f80_A 150 QIQWSNNKGENIPTVEAPVVADGVGLYAVAASVIMRGSSGEGVSCTIRSSLLGLEKTASISIADP 214 (226)
T ss_dssp EEEEECTTSCBCCCEECCCEECTTSCEEEEEEEEECC----CEEEEEEETTTTEEEEEEECCCTT
T ss_pred EEEEEECCceEcCCCceEEEECCCCcEEEEEEEEechhcCcEEEEEEEeCCCCeEEEEEEEECCC
Confidence 99999976544322 221 11 222 2344567889999999999999999999998888764
No 203
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G
Probab=99.83 E-value=4.2e-21 Score=152.91 Aligned_cols=176 Identities=24% Similarity=0.394 Sum_probs=124.6
Q ss_pred ccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEee----------C-------CeeEEEEccCCcCCC
Q psy14542 9 SSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRR----------N-------SDEVLVLDRVQREDA 71 (371)
Q Consensus 9 ~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~----------~-------~~~~l~i~~~~~~d~ 71 (371)
.++.+...|.. +.+.+|+++.|.|.+. +.|.+.+.|++++..+.. . ...+|.|.+++.+|+
T Consensus 3 ~~~~i~~~~~~-~~v~~G~~v~L~C~~~-~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~L~i~~~~~~d~ 80 (209)
T 1nbq_A 3 GSVTVHSSEPE-VRIPENNPVKLSCAYS-GFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDT 80 (209)
T ss_dssp CCCEEECSCSB-CCEETTCCCEEECEEE-SCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEETTEEECSCCCTTSC
T ss_pred ceEEEEcCCCc-eEEEcCCCEEEEEEEe-CCCCcEEEEEEcCCceeEEEEecCccCccccCceEeeccEEEEeeCCHHHC
Confidence 45667777776 8899999999999654 557889999997654210 0 236899999999999
Q ss_pred eEEEEEEEcCCCC--eEEEEEEEEecceeeEe-cCCceeeecCCcEEEEEEe-cCCCCCceEEEeeCCEEeeeCCeeEEE
Q psy14542 72 GMYQCHVSADDDS--AQMSAQVILGGELVEIA-SSNQVVVDVGHRIELHCRV-SPKRLSSAKAWLKDGLVLRRNSDEVLV 147 (371)
Q Consensus 72 G~Y~C~~~~~~~~--~~~~~~l~v~~~~~~~~-~~~~~~~~~g~~v~l~C~~-~~~~~~~~v~W~~~~~~~~~~~~~~~~ 147 (371)
|.|+|.+.+..+. ....+.|.|. .+|.+. ......+..|+.+.|.|.+ .+.|. +.+.|++++..+........
T Consensus 81 G~Y~C~~~~~~g~~~~~~~~~l~V~-~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~-~~v~W~~~~~~~~~~~~~~~- 157 (209)
T 1nbq_A 81 GTYTCMVSEEGGNSYGEVKVKLIVL-VPPSKPTVNIPSSATIGNRAVLTCSEQDGSPP-SEYTWFKDGIVMPTNPKSTR- 157 (209)
T ss_dssp SEEEEEEEETTSSCEECCEEECCEE-BCCCCCCCCCBSEEETTSCEEECCCCCSCBSC-CEEEEEETTCCCCSCSSSSS-
T ss_pred cEEEEEEecCCCCccceEEEEEEEe-cCCcCCCcccccceecCCEEEEEEeCCCCCCC-ceeEEEECCeeCCCccccce-
Confidence 9999999987653 3456777776 333332 2223345899999999997 67676 89999999987765431100
Q ss_pred EcccCcCCCeeEEEEEeCCceeEe-ccceEEEEEeecCCccceeEEEeeccccceeeee
Q psy14542 148 LDRVQREDAGMYQCHIEDGKYHML-SSGELIIHQVDESDRYRSYQCRGVNKLTGASLLS 205 (371)
Q Consensus 148 ~~~~~~~~~g~y~~~~~~~~~~~~-~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~ 205 (371)
... +.++... ..+.|.|.++..+| .|.|+|.+.|. .|....+
T Consensus 158 -----~~~---------~~~~~~~~~~~~L~i~~~~~~d-~G~Y~C~a~n~-~g~~~~s 200 (209)
T 1nbq_A 158 -----AFS---------NSSYVLNPTTGELVFDPLSASD-TGEYSCEARNG-YGTPMTS 200 (209)
T ss_dssp -----SCT---------TCCCCCCTTTCCEEESSCCGGG-CCCEEEEEECS-SSCCEEC
T ss_pred -----eee---------ccceEEcCCcceEEEEeccccC-CeEEEEEEeCC-cCccccc
Confidence 000 0111111 23689999999999 99999999999 6665333
No 204
>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49}
Probab=99.83 E-value=3.4e-18 Score=134.23 Aligned_cols=244 Identities=17% Similarity=0.254 Sum_probs=161.7
Q ss_pred cceEEEeCCCcEEEeccCcEEEEEEecCCCC---CCeeEEEeCCEEEeeCCeeEEEEccCCcCCCeEEEEEEEcCCCCeE
Q psy14542 10 SLSIEMSPSGQVVVDVGHRIELHCRVSPKRL---SSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHVSADDDSAQ 86 (371)
Q Consensus 10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~---~~~~~W~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~ 86 (371)
.+++.+.|+. ..+..|+.++|.|.+..+.| ..+++|+|||..+.. ....|.+..++..|+|.|+|.+.+..+...
T Consensus 2 ~~tVs~~P~~-~~i~~GdsVTLTatVaGGkP~pspyTYqWyKDG~~IsG-aT~tLti~s~t~sdSG~YqCvVTDa~Gcs~ 79 (304)
T 3shs_A 2 AFTVSIQSNK-RCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHEN-NTATLTVADATSENAGSYKVTVQDTDTMTS 79 (304)
T ss_dssp CEEEEEEESC-SSBCTTCCEEEEEEEEESSSCCCCEEEEEEETTEECSC-CSSEEEESSCCGGGCEEEEEEEEETTTCCE
T ss_pred ccEEEeCCCC-ccccCCCCEEEEEEecCCCCCCCCceEEEEECCccccC-CcceEEeeeccccCCeEEEEEEEECCCCee
Confidence 4678888988 78999999999998888877 568999999988764 456899999999999999999998877665
Q ss_pred EEEEEEEec-ceeeEecC-Ccee-eecCCcEEEEEEe--cCCCC-----CceEEEeeCCEEeeeCCeeEEEEcccCcCCC
Q psy14542 87 MSAQVILGG-ELVEIASS-NQVV-VDVGHRIELHCRV--SPKRL-----SSAKAWLKDGLVLRRNSDEVLVLDRVQREDA 156 (371)
Q Consensus 87 ~~~~l~v~~-~~~~~~~~-~~~~-~~~g~~v~l~C~~--~~~~~-----~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (371)
....+.|.. ..+.+... |... ...|..+.|.+.+ .+..+ ..+|+|++++..+...
T Consensus 80 tSs~VtVT~~a~l~i~it~P~s~~vssg~sVtL~aTVt~SGGtppA~~~~yTYQWyKngt~IsgA--------------- 144 (304)
T 3shs_A 80 VESEVFLMEEAELIVNITEPQHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVIDTT--------------- 144 (304)
T ss_dssp EECCCEEECBCCEEEEESSCSEEEECSSCCEEEEEEEEETTSCCSSTTCCCEEEEEETTEEEESS---------------
T ss_pred eeeeEEEeccCceeEEecCCCceeccCCCeEEEEEEEeccCCCCcccCCCceeEEeeCCeEccCc---------------
Confidence 443344432 22223222 2222 2567889999988 54322 3699999999877543
Q ss_pred eeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeec
Q psy14542 157 GMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKK 236 (371)
Q Consensus 157 g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~ 236 (371)
..|++......+ .|.|+|.+.+. .+....+. ...+.+. ..+.-........ +..
T Consensus 145 -----------------q~lT~sS~Tate-aG~YtV~VTn~-~~~c~~s~-~~~i~~~-----~~~v~~~~~~~~~-~~~ 198 (304)
T 3shs_A 145 -----------------QDITIQEFTADK-NGVYTVKVWGE-SEDSAASA-STKIMLA-----TMNVDQDVVESKT-VAL 198 (304)
T ss_dssp -----------------SEEEECSCCGGG-CEEEEEEEESS-SGGGCEEE-EEEEEEC-----EEEEEECCCSEEE-EET
T ss_pred -----------------cccceeeEEecC-CeEEEEEEEcC-CCCccccc-ceEEEEE-----ccccchhheEeeh-hhc
Confidence 345666667777 99999999988 44222222 1133333 2222222222333 888
Q ss_pred CCeEEEEEEee----cC--CCC----ceEEEeCCc-ccccC----------CceE-EecceEEEeccCCCCCeEEEEEEE
Q psy14542 237 DESVILPCSAQ----GN--PLP----TIKWYKQDS-PVEES----------DRIQ-RIGSSLSISHVEESDSGVWNCVAN 294 (371)
Q Consensus 237 g~~~~l~C~~~----~~--p~~----~v~W~~~~~-~~~~~----------~~~~-~~~~~l~i~~~~~~d~G~Y~C~a~ 294 (371)
|+.+.|...+. |+ ..| .+.|+.... .+.+. ..+. ..+++|.-....-+|...|+|++.
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (304)
T 3shs_A 199 GNEISLNYVVSEDIVGDSSGMPNLTIKYNWYLQREGQLSPTLIGSEVGEALEGFSITPDGHLFKESATYDDTAKFWCVAK 278 (304)
T ss_dssp TSCEEECCEEEEECCSCCTTCCEEEEEEEEEEECTTCCSCEEEESSSEECGGGEEECTTSCEEESSCCGGGCEEEEEEEE
T ss_pred CcEEEEEEEEeeccccCCCCCCceEEEEEEEEeecCccCchhhhhhhhhhhccceeCCCcceeecccccccchheeeHHH
Confidence 99998887653 22 223 468874322 22111 1111 345678888888999999999986
Q ss_pred cC
Q psy14542 295 NS 296 (371)
Q Consensus 295 n~ 296 (371)
..
T Consensus 279 ~~ 280 (304)
T 3shs_A 279 LY 280 (304)
T ss_dssp EE
T ss_pred HH
Confidence 43
No 205
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Probab=99.83 E-value=3.6e-19 Score=143.10 Aligned_cols=170 Identities=15% Similarity=0.251 Sum_probs=112.2
Q ss_pred CCCcEEEeccCcEEEEEEecCCCC-----CCeeEEEeCCEEEeeC---------------------------CeeEEEEc
Q psy14542 17 PSGQVVVDVGHRIELHCRVSPKRL-----SSAKAWLKDGLVLRRN---------------------------SDEVLVLD 64 (371)
Q Consensus 17 p~~~~~~~~G~~v~l~C~~~~~~~-----~~~~~W~~~~~~~~~~---------------------------~~~~l~i~ 64 (371)
|..++.+.+|++++|.|.+. +.| ...+.|+|++..+... ...+|.|.
T Consensus 7 p~~~v~~~~G~~v~L~C~~~-~~p~~~~~~~~v~W~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~ 85 (222)
T 3sbw_C 7 PKDLYVVEYGSNMTIECKFP-VEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQIT 85 (222)
T ss_dssp SCSEEEEETTSCEEEEEECC-CCSSCCTTTCEEEEEETTEEEEEEETTEECSSSSCGGGSSSEEECHHHHTTTEEEEEES
T ss_pred CCccEEEEcCCcEEEEeEec-CCCCCCCccEEEEEEECCcEEEEEeCCccccccccccccCceEEccccccCCEEEEEEc
Confidence 33447899999999999653 222 3479999976333110 23589999
Q ss_pred cCCcCCCeEEEEEEEcCCCCeEEEEEEEEecceeeEec-CCceeeecCCcEEEEEEecCCCCCceEEEeeC-CEEeeeCC
Q psy14542 65 RVQREDAGMYQCHVSADDDSAQMSAQVILGGELVEIAS-SNQVVVDVGHRIELHCRVSPKRLSSAKAWLKD-GLVLRRNS 142 (371)
Q Consensus 65 ~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~-~~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~-~~~~~~~~ 142 (371)
+++.+|+|.|+|.+.+ .+.....+.|.|. .++.... ........|+.+.|.|.+.+.|. +.+.|+++ +..+....
T Consensus 86 ~v~~~D~G~Y~C~~~~-~~~~~~~~~l~V~-~~~~~~~~~~~~~~~~g~~v~L~C~~~g~P~-p~i~W~~~~g~~~~~~~ 162 (222)
T 3sbw_C 86 DVKLQDAGVYRCMISY-GGADYKRITVKVN-APYNKINQRILVVDPVTSEHELTCQAEGYPK-AEVIWTSSDHQVLSGKT 162 (222)
T ss_dssp SCCGGGCEEEEEEEES-SSEEEEEEEEEEE-BCCCCCEEEEEEEETTTTEEEEEEEEEEBSC-CEEEEEETTCCEECCEE
T ss_pred CcccccCeEEEEEEEe-CCCceeEEEEEEE-CCCCCCCceeeeeecCCCcEEEEEEecCCCC-CeEEEEECCCceecCcc
Confidence 9999999999999998 5556777888887 3332211 11123478999999999998776 89999998 55443321
Q ss_pred eeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeee
Q psy14542 143 DEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLT 214 (371)
Q Consensus 143 ~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~ 214 (371)
... ......| .+. ...+..+...| .|.|+|.+.|. .+...... .+.|.
T Consensus 163 ~~~-----~~~~~~~---------~~~-----~~~~l~v~~~d-~g~Y~C~a~n~-~g~~~~~~---~l~v~ 210 (222)
T 3sbw_C 163 TTT-----NSKREEK---------LFN-----VTSTLRINTTT-NEIFYCTFRRL-DPEENHTA---ELVIP 210 (222)
T ss_dssp EEE-----ECC-------------CEE-----EEEEEEEECCT-TCEEEEEEEET-TTTEEEEE---EEECC
T ss_pred ceE-----EEcCCCC---------CEE-----EEEEEEEeccC-CcEEEEEEEeC-ccceeeEE---EEEec
Confidence 100 0001111 111 12222456788 99999999999 77766666 77776
No 206
>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}
Probab=99.83 E-value=1.8e-19 Score=141.41 Aligned_cols=170 Identities=15% Similarity=0.184 Sum_probs=111.6
Q ss_pred eecCCcEEEEEEecCCCCCceEEEeeCCEEeeeC---Ce--eEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEee
Q psy14542 108 VDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN---SD--EVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVD 182 (371)
Q Consensus 108 ~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~---~~--~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~ 182 (371)
+.+|++++|.|.+.+......+.|++++..+... .. ..+... ...| .++..+..+..|.|.+++
T Consensus 10 ~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~i~~~~~~~~~~~~~~~~------~~~~-----~~R~~~~~~~sL~I~~v~ 78 (193)
T 2if7_A 10 GILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVT------NPKQ-----GKRLNFTQSYSLQLSNLK 78 (193)
T ss_dssp EETTSCEEECCCCCCCSCCCEEEEEETTEEEEEEECCSSSCCEEEEC------CHHH-----HTTEEECTTCCEEECSCC
T ss_pred EEecCeEEEeccCCCcccccEEEEEECCEEEEEEecccCCCCceeec------Cccc-----cccEEECCCeEEEECCCC
Confidence 3899999999998753332689999987644211 00 000000 0000 124445556889999999
Q ss_pred cCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCC-eEEEEEEeecC-CCCceEEEeCC
Q psy14542 183 ESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDE-SVILPCSAQGN-PLPTIKWYKQD 260 (371)
Q Consensus 183 ~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~-~~~l~C~~~~~-p~~~v~W~~~~ 260 (371)
.+| +|.|.|.+.+. .+...... .|.|.... ..|.+.... .. ...|. .++|.|.+.+. |.+.+.|+++|
T Consensus 79 ~~D-~G~Y~C~~~~~-~~~~~~~~---~L~V~~~~--~~p~i~~~~--~~-~~~g~~~v~L~C~~~g~~p~p~i~W~~~g 148 (193)
T 2if7_A 79 MED-TGSYRAQISTK-TSAKLSSY---TLRILRQL--RNIQVTNHS--QL-FQNMTCELHLTCSVEDADDNVSFRWEALG 148 (193)
T ss_dssp GGG-CEEEEEEEECS-SCEEEEEE---EEEEECCC--EEEEEEECC--C----CSSEEEEEEEEEESCCTTCEEEEEETT
T ss_pred ccc-CceEEEEEEec-CCCeEEEE---EEEEEccC--CCCeEecCc--ee-ecCCCceEEEEEEEecCCCceEEEEEeCC
Confidence 999 99999999988 55544444 67776321 223333222 11 34455 89999999985 57899999998
Q ss_pred cccccCCceEEecceEEEeccCCC-CCeEEEEEEEcCCCCceeEEE
Q psy14542 261 SPVEESDRIQRIGSSLSISHVEES-DSGVWNCVANNSEGQDKMQLF 305 (371)
Q Consensus 261 ~~~~~~~~~~~~~~~l~i~~~~~~-d~G~Y~C~a~n~~g~~~~~~~ 305 (371)
..+.. ++.|.|.....+ |+|.|+|.|.|..|..+..+.
T Consensus 149 ~~l~~-------~~~l~i~~~~~~~d~G~Y~C~a~N~~g~~s~~~~ 187 (193)
T 2if7_A 149 NTLSS-------QPNLTVSWDPRISSEQDYTCIAENAVSNLSFSVS 187 (193)
T ss_dssp EEEES-------SSEEEEEECTTTCSCCEEEEEEEETTEEEEEEEE
T ss_pred EEcCC-------CCeEEEEeccCcCCCCcEEEEEECCCCccccccc
Confidence 76543 345777655554 899999999999998765543
No 207
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Probab=99.83 E-value=9e-20 Score=147.62 Aligned_cols=164 Identities=20% Similarity=0.280 Sum_probs=114.3
Q ss_pred cEEEeccCcEEEEEEecCCCCC-CeeEEEeCCEE-------------------Ee----------eCCeeEEEEccCCcC
Q psy14542 20 QVVVDVGHRIELHCRVSPKRLS-SAKAWLKDGLV-------------------LR----------RNSDEVLVLDRVQRE 69 (371)
Q Consensus 20 ~~~~~~G~~v~l~C~~~~~~~~-~~~~W~~~~~~-------------------~~----------~~~~~~l~i~~~~~~ 69 (371)
.+.+.+|+++.|.|. ..+.+. +.+.|++++.. +. ...++.|.|.+++.+
T Consensus 9 ~~~v~~G~~v~L~C~-~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~L~i~~v~~~ 87 (231)
T 2pet_A 9 LVEVMRGKSVILDCT-PTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLDSQGRLVLAEAQVG 87 (231)
T ss_dssp EEEEETTCCEEECCC-CBSCCSEEEEEEEEECTTCCCCEEEEEEEETTEEEEEECCCSCCSSCCEECTTCCEEESSCCGG
T ss_pred cEEEEcCCCEEEecc-cCCCCCceEEEEEEeCCCceeEEEEeccccCCccccccccccccccccccCCCceEEEcccCcc
Confidence 378999999999995 445553 78999974321 11 113345999999999
Q ss_pred CCeEEEEEEEcCC-CCeEEEEEEEEecce--eeEecCCce-eeecCCcE-EEEEEe-cCCCCCceEEEeeCCEEeeeCC-
Q psy14542 70 DAGMYQCHVSADD-DSAQMSAQVILGGEL--VEIASSNQV-VVDVGHRI-ELHCRV-SPKRLSSAKAWLKDGLVLRRNS- 142 (371)
Q Consensus 70 d~G~Y~C~~~~~~-~~~~~~~~l~v~~~~--~~~~~~~~~-~~~~g~~v-~l~C~~-~~~~~~~~v~W~~~~~~~~~~~- 142 (371)
|+|.|+|.+.+.. +.....+.|.|...+ +.+...+.. .+.+|+.+ .|.|.+ .+.|. +.+.|++++..+....
T Consensus 88 D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~g~~~~~l~C~~~~~~p~-p~i~W~~~~~~~~~~~~ 166 (231)
T 2pet_A 88 DERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTLSVMEDSAQEIATCNSRNGNPA-PKITWYRNGQRLEVPVE 166 (231)
T ss_dssp GCEEEEEEEECGGGCEEEEEEEEEEEBCCCCCEEEECCSSCCTTCCSEEEEEEEEEEEEBSC-CEEEEEETTEECCCCSS
T ss_pred cCceEEEEEEecCCCceEEEEEEEEEecCCCcEEecCCcceeecCCCceEEEEEEeECcccC-CEEEEEECCccCccccc
Confidence 9999999999876 666778888887332 334433332 23688887 999999 77776 8999999999887654
Q ss_pred --eeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeecc
Q psy14542 143 --DEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNK 197 (371)
Q Consensus 143 --~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~ 197 (371)
............+.|.|.+ . +.|.|.....+| .|.|+|.|.|.
T Consensus 167 ~~~~~~~~~~~~~~~~g~~~~---------~--~~L~i~~~~~dd-~g~Y~C~a~n~ 211 (231)
T 2pet_A 167 MNPEGYMTSRTVREASGLLSL---------T--STLYLRLRKDDR-DASFHCAAHYS 211 (231)
T ss_dssp CCSSEEEEEEEEECTTSCEEE---------E--EEEEEECCGGGG-GCEEEEEEEEE
T ss_pred cccceeecceeEecCCCeEEE---------E--EEEEEecchhhC-CceEEEEEEcC
Confidence 2222222223333443332 1 568887666667 99999999995
No 208
>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A
Probab=99.83 E-value=2.4e-19 Score=141.75 Aligned_cols=170 Identities=12% Similarity=0.133 Sum_probs=113.2
Q ss_pred ceeeEecCCceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccce
Q psy14542 96 ELVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGE 175 (371)
Q Consensus 96 ~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~ 175 (371)
.+|.+...+...+.+|++++|.|.+.+ +. +.+.|+|++..+...... .. ......+..
T Consensus 7 ~~P~i~~~p~~~v~~G~~v~L~C~~~~-~~-~~~~w~k~g~~~~~~~~~----~~----------------~~~~~~~~~ 64 (201)
T 1nkr_A 7 RKPSLLAHPGPLVKSEETVILQCWSDV-MF-EHFLLHREGMFNDTLRLI----GE----------------HHDGVSKAN 64 (201)
T ss_dssp CCCEEEEESCSEEETTCCEEEEEEESS-CC-SEEEEEEESSSCEEEEEE----CE----------------EETTEEEEE
T ss_pred CCCeEEEEcCCccCCCCcEEEEEeccC-CC-CEEEEEECCCcCCcceee----ee----------------cCCCCceEE
Confidence 455666656655689999999999974 44 799999988754321100 00 000012267
Q ss_pred EEEEEeecCCccceeEEEeeccccc--eeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecCCCCc
Q psy14542 176 LIIHQVDESDRYRSYQCRGVNKLTG--ASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPT 253 (371)
Q Consensus 176 l~i~~~~~~d~~g~y~C~~~~~~~~--~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~ 253 (371)
|.|.+++.+| +|.|+|.+.+...+ ....+. ...|.|... ..+|.+...+. .. +.+|+.++|.|.+.+ +.+.
T Consensus 65 l~I~~v~~~D-~G~Y~C~a~~~~~~~~~~~~s~-~~~l~V~~~--~~~p~i~~~p~-~~-v~~G~~v~L~C~~~~-~~~~ 137 (201)
T 1nkr_A 65 FSISRMTQDL-AGTYRCYGSVTHSPYQVSAPSD-PLDIVIIGL--YEKPSLSAQPG-PT-VLAGENVTLSCSSRS-SYDM 137 (201)
T ss_dssp EEESSCCGGG-CEEEEEEEEBTTBTTCCCCCCC-CEEEEEECS--SCCCEEEEESC-SE-ECTTCEEEEEEEESS-CCSE
T ss_pred EEeccCCccc-CeEEEEeEecCCCCccccCCCC-CEEEEeecc--CCCCceecCCC-Cc-cCCCCeEEEEEeCCC-CCce
Confidence 9999999999 99999999764111 111111 115555532 13456655444 34 899999999999885 5678
Q ss_pred eEEEeCCcccccCCc-eEE----ecceEEEeccCCCCCeEEEEEEEcC
Q psy14542 254 IKWYKQDSPVEESDR-IQR----IGSSLSISHVEESDSGVWNCVANNS 296 (371)
Q Consensus 254 v~W~~~~~~~~~~~~-~~~----~~~~l~i~~~~~~d~G~Y~C~a~n~ 296 (371)
+.|+|+|..+..... ... .++.|.|.++. |+|.|+|.|.+.
T Consensus 138 ~~w~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~--d~G~Y~C~a~~~ 183 (201)
T 1nkr_A 138 YHLSREGEAHERRLPAGPKVNGTFQADFPLGPAT--HGGTYRCFGSFH 183 (201)
T ss_dssp EEEEETTCSSCEEEECEEEETTEEEEEEEEEECC--SCEEEEEEEEET
T ss_pred EEEEECCcccCcccccccccCCceEEEEEeCCcC--CCeeEEEEEEcC
Confidence 999999987754321 111 25679999998 999999999865
No 209
>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...
Probab=99.83 E-value=2e-19 Score=143.66 Aligned_cols=169 Identities=18% Similarity=0.241 Sum_probs=114.6
Q ss_pred eEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCC--EEE----------e-----------eCCeeEEEEccCCc
Q psy14542 12 SIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDG--LVL----------R-----------RNSDEVLVLDRVQR 68 (371)
Q Consensus 12 ~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~--~~~----------~-----------~~~~~~l~i~~~~~ 68 (371)
.+...|.. +.+.+|++++|.|.+ .+.+.+.+.|+|++ ..+ . .....+|.|.+++.
T Consensus 3 ~v~~~p~~-~~v~~G~~v~L~C~~-~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~ 80 (213)
T 3d9a_L 3 VLTQSPAT-LSVTPGNSVSLSCRA-SQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVET 80 (213)
T ss_dssp CEEEECSE-EEECTTCCEEEEEEE-SSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCG
T ss_pred eEEeCCcc-EEEeCCCcEEEEEEC-CCCCCCCEEEEEeCCCCCcEEEEEEcccccccccccEEEEcCCCEEEEEECCCCh
Confidence 45555666 889999999999964 55667789999842 111 0 01345899999999
Q ss_pred CCCeEEEEEEEcCCCCeE-EEEEEEEec--ceeeEecC-CceeeecCCcEEEEEEecCC-CCCceEEEeeCCEEeeeCCe
Q psy14542 69 EDAGMYQCHVSADDDSAQ-MSAQVILGG--ELVEIASS-NQVVVDVGHRIELHCRVSPK-RLSSAKAWLKDGLVLRRNSD 143 (371)
Q Consensus 69 ~d~G~Y~C~~~~~~~~~~-~~~~l~v~~--~~~~~~~~-~~~~~~~g~~v~l~C~~~~~-~~~~~v~W~~~~~~~~~~~~ 143 (371)
+|+|.|+|.+.+..+... ....|.|.. .+|.+... +......|+.++|.|.+.+. |.+..+.|++++..+.....
T Consensus 81 ~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~ 160 (213)
T 3d9a_L 81 EDFGMYFCQQSNSWPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVL 160 (213)
T ss_dssp GGCEEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEE
T ss_pred hhCEEEEEeeecCCcceeCCCEEEEEecCCCCceeEeECCChhhcCCCcEEEEEEEeeecCCceEEEEEcCCCcCcceee
Confidence 999999999998765432 234566652 24544442 22223578999999999874 44248999999998765411
Q ss_pred eEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeecc
Q psy14542 144 EVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNK 197 (371)
Q Consensus 144 ~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~ 197 (371)
. .........|.| . ..+.|.|.++..+| .|.|+|.|.|.
T Consensus 161 ~---~~~~~~~~~~~~---------~--~~s~L~i~~~~~~d-~G~Y~C~a~n~ 199 (213)
T 3d9a_L 161 N---SWTDQDSKDSTY---------S--MSSTLTLTKDEYER-HNSYTCEATHK 199 (213)
T ss_dssp E---EECCCCTTTCCE---------E--EEEEEEEEHHHHHH-CCEEEEEEECT
T ss_pred e---cCCCccCCCCCE---------E--EEEEEEEeccccCC-CCEEEEEEEEc
Confidence 0 111111222222 2 12689999999999 99999999997
No 210
>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*
Probab=99.83 E-value=1e-19 Score=143.92 Aligned_cols=156 Identities=19% Similarity=0.324 Sum_probs=108.1
Q ss_pred ecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccc
Q psy14542 109 DVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYR 188 (371)
Q Consensus 109 ~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g 188 (371)
.+|++++|.|.+ +. +.+.|+|++..+.... ..+..|.|.+++.+| +|
T Consensus 16 ~~G~~v~L~C~~---p~-~~i~W~k~g~~l~~~~----------------------------~~~~~L~i~~v~~~D-sG 62 (204)
T 1sy6_A 16 QEDGSVLLTCDA---EA-KNITWFKDGKMIGFLT----------------------------EDKKKWNLGSNAKDP-RG 62 (204)
T ss_dssp CSSSEEEEEECS---CS-SEEEEEETTEEEEEEE----------------------------SSCCCEEEEEGGGCC-EE
T ss_pred cCCCeEEEEEcC---CC-CEEEEEECCEECCCCC----------------------------CCCCeEEeCCCCcCC-CE
Confidence 579999999998 44 7999999998775420 012579999999999 99
Q ss_pred eeEEEeeccccceeeeeeccceeeeec------c-------------------h-hccccceeeeeeeeeeee-cCCeEE
Q psy14542 189 SYQCRGVNKLTGASLLSVNRGRLSLTE------N-------------------K-RLLSAAKMFEKHRILNVK-KDESVI 241 (371)
Q Consensus 189 ~y~C~~~~~~~~~~~~~~~~~~l~v~~------~-------------------~-~~~~p~~~~~~~~~~~~~-~g~~~~ 241 (371)
.|+|.+.+. .. . .. .+.+.. . . ...++.+...+ .. +. +|+.++
T Consensus 63 ~Y~C~~~~~-~s-~--~~---~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--~~-v~~~G~~v~ 132 (204)
T 1sy6_A 63 MYQCKGSQN-KS-K--PL---QVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTP--YK-VSISGTTVI 132 (204)
T ss_dssp EEEEESSSS-CC-C--CE---EEEEEC------------------------------------CCC--CE-EEEETTEEE
T ss_pred EEEEEecCC-CC-e--eE---EEEEEEeccccccccccccccccccccccccccccccccceecCC--ce-eeecCCcEE
Confidence 999997653 21 1 11 333320 0 0 00012221111 12 44 899999
Q ss_pred EEEEeecCCCCceEEEeCCcccccC---CceEEecceEEEecc-CCCCCeEEEEEEEcCCCCc-eeEEEEEEe
Q psy14542 242 LPCSAQGNPLPTIKWYKQDSPVEES---DRIQRIGSSLSISHV-EESDSGVWNCVANNSEGQD-KMQLFIQYA 309 (371)
Q Consensus 242 l~C~~~~~p~~~v~W~~~~~~~~~~---~~~~~~~~~l~i~~~-~~~d~G~Y~C~a~n~~g~~-~~~~~l~v~ 309 (371)
|.|. +.|.+.+.|++++..+... ..+...++.|.|.++ ..+|+|.|+|.|.|..|.. +..+.|.+.
T Consensus 133 L~C~--g~p~p~i~W~k~~~~l~~~~~~~~~~~~~~~L~I~~v~~~~D~G~Y~C~A~N~~g~~~s~~l~l~~~ 203 (204)
T 1sy6_A 133 LTCP--QYPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDANFYLYLRAR 203 (204)
T ss_dssp EECS--CCCSSCEEEEETTEEESCCTTCTTEEEETTEEEETTCCHHHHCEEEEEEETTSCGGGSSCEEEEEEC
T ss_pred EEcC--CCCCCceEEEECCEECCCccCCceEecCCCEEEEeeCCccccCEEEEEEeccCCCCceeEEEEEEEe
Confidence 9998 7888999999999877543 223346789999999 9999999999999999973 566666553
No 211
>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...
Probab=99.82 E-value=1.7e-19 Score=144.13 Aligned_cols=181 Identities=14% Similarity=0.183 Sum_probs=116.9
Q ss_pred ceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcc--cCcCCCeeEEEEEeCCceeEe---ccceEEEE
Q psy14542 105 QVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDR--VQREDAGMYQCHIEDGKYHML---SSGELIIH 179 (371)
Q Consensus 105 ~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~--~~~~~~g~y~~~~~~~~~~~~---~~~~l~i~ 179 (371)
...+.+|++++|.|.+.+.+. +.+.|++++.... ...+.... ......+ ++... ....|.|.
T Consensus 10 ~~~v~~G~~v~L~C~~~~~~~-~~v~W~k~~~~~~---~~~~~~~~~~~~~~~~~---------r~~~~~~~~~~~L~I~ 76 (213)
T 3d9a_L 10 TLSVTPGNSVSLSCRASQSIG-NNLHWYQQKSHES---PRLLIKYASQSISGIPS---------RFSGSGSGTDFTLSIN 76 (213)
T ss_dssp EEEECTTCCEEEEEEESSCCT-TCEEEEEECTTSC---CEEEEETTTEECTTSCT---------TEEEEEETTEEEEEES
T ss_pred cEEEeCCCcEEEEEECCCCCC-CCEEEEEeCCCCC---cEEEEEEcccccccccc---------cEEEEcCCCEEEEEEC
Confidence 334589999999999998876 7899998532100 00011000 0000011 22222 12479999
Q ss_pred EeecCCccceeEEEeecccccee-eeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeec-CCCC-ceEE
Q psy14542 180 QVDESDRYRSYQCRGVNKLTGAS-LLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQG-NPLP-TIKW 256 (371)
Q Consensus 180 ~~~~~d~~g~y~C~~~~~~~~~~-~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~v~W 256 (371)
+++.+| +|.|+|.+.+. .+.. .... .+.|... ..+|.+........ ...|+.+.|.|.+.+ .|.+ .+.|
T Consensus 77 ~v~~~D-~G~Y~C~~~~~-~~~~~~~~~---~l~V~~~--~~~p~v~~~~~~~~-~~~g~~~~l~C~~~g~~p~~~~v~W 148 (213)
T 3d9a_L 77 SVETED-FGMYFCQQSNS-WPYTFGGGT---KLEIKRA--DAAPTVSIFPPSSE-QLTSGGASVVCFLNNFYPKDINVKW 148 (213)
T ss_dssp SCCGGG-CEEEEEEECSS-SSCEECCCE---EEEECCC--CBCCEEEEECCCHH-HHHTTEEEEEEEEEEEBSSCCEEEE
T ss_pred CCChhh-CEEEEEeeecC-CcceeCCCE---EEEEecC--CCCceeEeECCChh-hcCCCcEEEEEEEeeecCCceEEEE
Confidence 999999 99999999987 4422 2222 5555421 13566555443333 457899999999987 5665 8999
Q ss_pred EeCCcccccCCce-----------EEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEE
Q psy14542 257 YKQDSPVEESDRI-----------QRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFI 306 (371)
Q Consensus 257 ~~~~~~~~~~~~~-----------~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 306 (371)
+++|..+...... ....+.|.|.++..+|+|.|+|.|.|..........+
T Consensus 149 ~k~g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~i 209 (213)
T 3d9a_L 149 KIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSF 209 (213)
T ss_dssp EETTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCSSCEEEEE
T ss_pred EcCCCcCcceeeecCCCccCCCCCEEEEEEEEEeccccCCCCEEEEEEEEccCCCceEEEe
Confidence 9999877654111 0123489999999999999999999988775444433
No 212
>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*
Probab=99.82 E-value=7.7e-20 Score=144.63 Aligned_cols=144 Identities=20% Similarity=0.293 Sum_probs=101.8
Q ss_pred EeccCcEEEEEEecCCCCCCeeEEEeCCEEEee--CCeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEEEEEEe------
Q psy14542 23 VDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRR--NSDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVILG------ 94 (371)
Q Consensus 23 ~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~--~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~------ 94 (371)
+.+|++++|.|.+ |.+.|.|+|+|..+.. ....+|.|.+++.+|+|.|+|.+.+. ... .+.|.+.
T Consensus 15 ~~~G~~v~L~C~~----p~~~i~W~k~g~~l~~~~~~~~~L~i~~v~~~DsG~Y~C~~~~~-~s~--~~~v~v~~~~~~~ 87 (204)
T 1sy6_A 15 YQEDGSVLLTCDA----EAKNITWFKDGKMIGFLTEDKKKWNLGSNAKDPRGMYQCKGSQN-KSK--PLQVYYRMGSADD 87 (204)
T ss_dssp CCSSSEEEEEECS----CSSEEEEEETTEEEEEEESSCCCEEEEEGGGCCEEEEEEESSSS-CCC--CEEEEEEC-----
T ss_pred ecCCCeEEEEEcC----CCCEEEEEECCEECCCCCCCCCeEEeCCCCcCCCEEEEEEecCC-CCe--eEEEEEEEecccc
Confidence 4589999999954 6789999999998864 25678999999999999999996543 222 2334333
Q ss_pred ---------------------c---ceeeEecCCceee-ecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEc
Q psy14542 95 ---------------------G---ELVEIASSNQVVV-DVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLD 149 (371)
Q Consensus 95 ---------------------~---~~~~~~~~~~~~~-~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~ 149 (371)
. .++.+...+. .+ .+|++++|.|. +.+. +.+.|++++..+.....
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~v~~~G~~v~L~C~--g~p~-p~i~W~k~~~~l~~~~~------ 157 (204)
T 1sy6_A 88 AKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQTPY-KVSISGTTVILTCP--QYPG-SEILWQHNDKNIGGDED------ 157 (204)
T ss_dssp -------------------------------CCCC-EEEEETTEEEEECS--CCCS-SCEEEEETTEEESCCTT------
T ss_pred ccccccccccccccccccccccccccccceecCCc-eeeecCCcEEEEcC--CCCC-CceEEEECCEECCCccC------
Confidence 0 0122222222 33 48999999998 5566 78999999988754311
Q ss_pred ccCcCCCeeEEEEEeCCceeEeccceEEEEEe-ecCCccceeEEEeeccccce
Q psy14542 150 RVQREDAGMYQCHIEDGKYHMLSSGELIIHQV-DESDRYRSYQCRGVNKLTGA 201 (371)
Q Consensus 150 ~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~-~~~d~~g~y~C~~~~~~~~~ 201 (371)
+......+..|.|.++ +.+| +|.|+|.+.|. .|.
T Consensus 158 ----------------~~~~~~~~~~L~I~~v~~~~D-~G~Y~C~A~N~-~g~ 192 (204)
T 1sy6_A 158 ----------------DKNIGSDEDHLSLKEFSELEQ-SGYYVCYPRGS-KPE 192 (204)
T ss_dssp ----------------CTTEEEETTEEEETTCCHHHH-CEEEEEEETTS-CGG
T ss_pred ----------------CceEecCCCEEEEeeCCcccc-CEEEEEEeccC-CCC
Confidence 0111112478999999 9999 99999999998 553
No 213
>3nl4_L Antigen binding fragment, immunoglobulin IGG - LI; FAB, rabbit, conformation-specific, amyloid, immune system; 1.54A {Oryctolagus cuniculus} PDB: 4hbc_L
Probab=99.82 E-value=3.7e-19 Score=142.12 Aligned_cols=166 Identities=15% Similarity=0.248 Sum_probs=112.0
Q ss_pred eeeecCCcEEEEEEecCCCCCceEEEeeCC--EEeeeCCeeEEEEcc--cCcCCCeeEEEEEeCCceeEe---ccceEEE
Q psy14542 106 VVVDVGHRIELHCRVSPKRLSSAKAWLKDG--LVLRRNSDEVLVLDR--VQREDAGMYQCHIEDGKYHML---SSGELII 178 (371)
Q Consensus 106 ~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~--~~~~~~~~~~~~~~~--~~~~~~g~y~~~~~~~~~~~~---~~~~l~i 178 (371)
..+.+|++++|.|.+.+.+. +.+.|+|+. ..+. .+.... ......+ ++... .+..|.|
T Consensus 11 ~~v~~G~~v~L~C~~~~~~~-~~v~W~k~~~~~~~~-----~~~~~~~~~~~~~~~---------r~~~~~~~~~~~L~I 75 (213)
T 3nl4_L 11 VSEPVGGTVTIKCQASQSIS-SYLAWYQQKPGQRPR-----LLIYETSTLASGVPS---------RFKGSGSGTDFTLTI 75 (213)
T ss_dssp EEEETTCCEEEEEEESSCCT-TCEEEEEECTTSCCE-----EEEETTTEECTTCCT---------TEEEEEETTEEEEEE
T ss_pred EEEcCCCCEEEEEEecCCCC-ceEEEEEECCCCCcE-----EEEEeCCccCCCCCc---------cEEEecCCCEEEEEE
Confidence 44589999999999998866 899999842 1110 010000 0001112 22222 2247999
Q ss_pred EEeecCCccceeEEEeeccccc---eeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeec-CCCCce
Q psy14542 179 HQVDESDRYRSYQCRGVNKLTG---ASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQG-NPLPTI 254 (371)
Q Consensus 179 ~~~~~~d~~g~y~C~~~~~~~~---~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~~v 254 (371)
.+++.+| +|.|+|.+.+. .+ ...... .+.|.. ...+|.+........ +..|+.++|.|.+.+ .|.+.+
T Consensus 76 ~~v~~~D-~G~Y~C~~~~~-~~~~~~~~~~~---~l~V~~--~~~~p~v~~~~~~~~-~~~g~~v~l~C~~~g~~P~~~v 147 (213)
T 3nl4_L 76 SDLECAD-AATYYCQSTYE-NPTYVSFGGGT---EVGVKG--DPVAPTVLIFPPSAD-LVATGTVTIVCVANKYFPDVTV 147 (213)
T ss_dssp CSCCGGG-CEEEEEEECCS-STTTCEECCCE---EEEEEC--CCBCCEEEEECCCHH-HHTTSEEEEEEEEEEEBSCCEE
T ss_pred CCCChHH-CEEEEEecCCC-CceeEEeCCCe---EEEEeC--CCcCCeEEEeCCchh-hccCCcEeEEEEEecccCCcEE
Confidence 9999999 99999999987 43 222222 555543 225566655444444 667999999999998 899999
Q ss_pred EEEeCCcccccCC-----------ceEEecceEEEeccCCCCCeEEEEEEE
Q psy14542 255 KWYKQDSPVEESD-----------RIQRIGSSLSISHVEESDSGVWNCVAN 294 (371)
Q Consensus 255 ~W~~~~~~~~~~~-----------~~~~~~~~l~i~~~~~~d~G~Y~C~a~ 294 (371)
.|+++|..+..+. ......+.|.|..+..+|+|.|+|.|.
T Consensus 148 ~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~a~ 198 (213)
T 3nl4_L 148 TWEVDGTTQTTGIENSKTPQNSADCTYNLSSTLTLTSTEYNSHKEYTCKVT 198 (213)
T ss_dssp EEEETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEE
T ss_pred EEEeCCccCCCCeecccCcccCCCCeEEEEEEEEecHHHcCCCCeEEEEEE
Confidence 9999998776432 111223579999999999999999999
No 214
>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}
Probab=99.82 E-value=1.5e-19 Score=145.43 Aligned_cols=186 Identities=17% Similarity=0.229 Sum_probs=119.8
Q ss_pred eeecCCcEEEEEEecCCC----CCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEec------cceE
Q psy14542 107 VVDVGHRIELHCRVSPKR----LSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLS------SGEL 176 (371)
Q Consensus 107 ~~~~g~~v~l~C~~~~~~----~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~------~~~l 176 (371)
.+.+|++++|.|.+.+.+ ....+.|++++..... ..... +........++..+.. +..|
T Consensus 6 ~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~i-----~~~~~------~~~~~~~~~~r~~~~~~~~~~~~~sL 74 (222)
T 4i0k_A 6 VALVDTDATLRCSFSPEPGFSLAQLNLIWQLTDTKQLV-----HSFTE------GRDQGSAYSNRTALFPDLLVQGNASL 74 (222)
T ss_dssp CCCTTSCEEECCBCCCCTTCCTTTEEEEEEETTTCCEE-----EEEET------TEEEEESSCSCEECCTTTGGGTBCCE
T ss_pred EEECCCCeEEEEEecCCCCCCCCceEEEEEECCCccEE-----EEEcC------CcccccceeCcEEEecccccCCeEEE
Confidence 347999999999987754 2268999997643211 00000 0000000122333332 4679
Q ss_pred EEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEe-ecCCCCceE
Q psy14542 177 IIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSA-QGNPLPTIK 255 (371)
Q Consensus 177 ~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~-~~~p~~~v~ 255 (371)
.|.+++.+| +|.|+|.+.+. . ...... .+.|... ...|.+...+. .. +..|+.+.|.|.+ .+.|.+.+.
T Consensus 75 ~I~~v~~~D-~G~Y~C~~~~~-~-~~~~~~---~l~V~~~--~~~p~i~~~~~-~~-v~~G~~~~l~C~~~~g~P~~~v~ 144 (222)
T 4i0k_A 75 RLQRVRVTD-EGSYTCFVSIQ-D-FDSAAV---SLQVAAP--YSKPSMTLEPN-KD-LRPGNMVTITCSSYQGYPEAEVF 144 (222)
T ss_dssp EECSCCGGG-CSCEEEEEEEC-C-CCCCCC---CCCCCBC--CCCCEEECCC-------CCSEEEEEEEEEEEBSCCEEE
T ss_pred EECCccccc-CEEEEEEEEeC-C-CceEEE---EEEEEcC--CCCCcEEeCCC-ce-ecCCceEEEEEecccccCCCeEE
Confidence 999999999 99999999975 2 222233 5555532 12344444332 23 7889999999999 789999999
Q ss_pred EEeC-CcccccCCceE---Eecc---eEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEecCcc
Q psy14542 256 WYKQ-DSPVEESDRIQ---RIGS---SLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKY 313 (371)
Q Consensus 256 W~~~-~~~~~~~~~~~---~~~~---~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~ 313 (371)
|+++ +..+....... ..++ .|.|.++..+|+|.|+|.|.|..|....++.|.|.++|.
T Consensus 145 W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~ 209 (222)
T 4i0k_A 145 WKDGQGVPLTGNVTTSQMANERGLFDVHSVLRVVLGANGTYSCLVRNPVLQQDAHGSVTITGQPL 209 (222)
T ss_dssp EECTTSCBCCSEEEEEEEECTTSCEEEEEEEEEECCTTCEEEEEEEETTTTEEEEEEEECCC---
T ss_pred EEcCCCccCCCCcceeEEcCCCCeEEEEEEEEEEeCCCCEEEEEEECCCCCCceEEEEEEeCCcc
Confidence 9994 44444322221 1122 378999999999999999999999999999999998877
No 215
>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*
Probab=99.82 E-value=4.6e-19 Score=141.24 Aligned_cols=176 Identities=13% Similarity=0.228 Sum_probs=114.1
Q ss_pred ceeeecCCcEEEEEEecCCCCCceEEEeeCC--EEeeeCCeeEEEEcc--cCcCCCeeEEEEEeCCceeEe---ccceEE
Q psy14542 105 QVVVDVGHRIELHCRVSPKRLSSAKAWLKDG--LVLRRNSDEVLVLDR--VQREDAGMYQCHIEDGKYHML---SSGELI 177 (371)
Q Consensus 105 ~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~--~~~~~~~~~~~~~~~--~~~~~~g~y~~~~~~~~~~~~---~~~~l~ 177 (371)
...+.+|++++|.|.+.+.+. +.+.|+++. ..+. .+.... ......+ ++... .+..|.
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~-~~v~W~~~~~g~~~~-----~~~~~~~~~~~~~~~---------r~~~~~~~~~~~L~ 73 (210)
T 1lk3_L 9 ALTVSPGEKLTISCKASESVT-SRMHWYQQKPGQQPK-----LLIYKASNLASGVPA---------RFSGSGSGTDFTLT 73 (210)
T ss_dssp EEEECTTSCEEEEEEESSCCT-TCEEEEEECTTSCCE-----EEEETTTEECTTCCT---------TEEEEEETTEEEEE
T ss_pred cEEEcCCCCEEEEeeCCCccC-CCEEEEEECCCCCeE-----EEEEccccccCCccc---------cEEEEecCCEEEEE
Confidence 344589999999999998876 789999843 2110 011000 0000011 22222 124799
Q ss_pred EEEeecCCccceeEEEeecccccee-eeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeec-CCCC-ce
Q psy14542 178 IHQVDESDRYRSYQCRGVNKLTGAS-LLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQG-NPLP-TI 254 (371)
Q Consensus 178 i~~~~~~d~~g~y~C~~~~~~~~~~-~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~v 254 (371)
|.+++.+| +|.|.|.+.+. .+.. .... .+.|... ..+|.+...+.... +..|+.++|.|.+.| .|.+ .+
T Consensus 74 I~~v~~~D-~G~Y~C~~~~~-~~~~~~~~~---~l~V~~~--~~~P~v~~~~~~~~-~~~g~~v~l~C~~~g~~p~~~~v 145 (210)
T 1lk3_L 74 IDPVEADD-TAIYFCQQSWN-GPLTFGAGT---KLELKRA--DAAPTVSIFPPSTE-QLATGGASVVCLMNNFYPRDISV 145 (210)
T ss_dssp ESSCCGGG-CEEEEEEECSS-SSCEECCCE---EEEECCC--CBCCEEEEECCCHH-HHTTTEEEEEEEEEEEBSSCCEE
T ss_pred ECCCCHHH-CeEEEEEEEcC-CCceeCCCE---EEEEcCC--CcCCeEEEECCchh-hccCCcEEEEEEEEeEeCCceEE
Confidence 99999999 99999999987 4322 1222 4555421 13565555443333 457999999999987 4554 89
Q ss_pred EEEeCCcccccC-Cc---e-------EEecceEEEeccCCCCCeEEEEEEEcCCCCceeE
Q psy14542 255 KWYKQDSPVEES-DR---I-------QRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQ 303 (371)
Q Consensus 255 ~W~~~~~~~~~~-~~---~-------~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~ 303 (371)
.|+++|..+... .. . ....+.|.|..+..+|+|.|+|.|.|.......+
T Consensus 146 ~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~ 205 (210)
T 1lk3_L 146 KWKIDGTERRDGVLDSVTDQDSKDSTYSMSSTLSLTKADYESHNLYTCEVVHKTSSSPVV 205 (210)
T ss_dssp EEEETTEECCTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCSSCEE
T ss_pred EEEeCCccCCCCceEccCCccCCCCCEEEEEEEEEChHHhccCCcEEEEEEecCCCCeee
Confidence 999999877654 11 0 0112379999999999999999999987754433
No 216
>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A
Probab=99.82 E-value=1.9e-19 Score=144.30 Aligned_cols=173 Identities=16% Similarity=0.249 Sum_probs=111.5
Q ss_pred ceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeC---CEE--E----------e------------eCCeeEEEE
Q psy14542 11 LSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKD---GLV--L----------R------------RNSDEVLVL 63 (371)
Q Consensus 11 ~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~---~~~--~----------~------------~~~~~~l~i 63 (371)
+.+...| . +.+.+|++++|.|.+....+.+.+.|+|. +.. + . .....+|.|
T Consensus 2 ~~v~~~p-~-~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I 79 (218)
T 3s96_B 2 LVLTQSS-S-ASFSLGASAKLTCTLNSQHSTYTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSSSGADRYLSI 79 (218)
T ss_dssp CSEECCS-E-EEEETTSCEEEEEEECGGGTTCCEEEEEECTTSCCEEEEEECTTSCEEECSSCCTTEEEEEETTEEEEEE
T ss_pred CeEEeCC-c-EEECCCCcEEEEEECCCCCCCcEEEEEEECCCCCeEEEEEEcccCccccCCCcccceEEecCCceEEEEE
Confidence 3455555 4 88999999999996544327788999982 110 0 0 013567999
Q ss_pred ccCCcCCCeEEEEEEEcCCC-----CeEEEEEEEEec---ceeeEec-CCceeeecCCcEEEEEEecCC-CCCceEEEee
Q psy14542 64 DRVQREDAGMYQCHVSADDD-----SAQMSAQVILGG---ELVEIAS-SNQVVVDVGHRIELHCRVSPK-RLSSAKAWLK 133 (371)
Q Consensus 64 ~~~~~~d~G~Y~C~~~~~~~-----~~~~~~~l~v~~---~~~~~~~-~~~~~~~~g~~v~l~C~~~~~-~~~~~v~W~~ 133 (371)
.+++.+|+|.|.|.+.+..+ .....+.|.|.. .+|.+.. .+......|+.++|.|.+.+. |.+..+.|++
T Consensus 80 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~~~~~~~~~~~~~~~~v~L~C~~~g~~p~~~~v~W~k 159 (218)
T 3s96_B 80 SNIQPEDEAIYICGVGDTIKEQFVYVFGGGTKVTVLGQPKSTPTLTVFPPSSEELKENKATLVCLISNFSPSGVTVAWKA 159 (218)
T ss_dssp SSCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEE
T ss_pred ccCCcccCEEEEEEEecCCCCceeEEEcCcEEEEEecCCCCCceEEeeCCCcccccCCcEEEEEEECcccCCCeEEEEEE
Confidence 99999999999999998765 122345666663 3344443 222233567899999999884 4424899999
Q ss_pred CCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceee
Q psy14542 134 DGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASL 203 (371)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~ 203 (371)
++..+.......... . ..| .+.+. +.|.|.....+| .|.|+|.+.|. .+...
T Consensus 160 ~g~~l~~~~~~~~~~----~-~~~---------~~~~~--s~l~i~~~~~~d-~g~Y~C~a~n~-~~~~~ 211 (218)
T 3s96_B 160 NGTPITQGVDTSNPT----K-EGN---------KFMAS--SFLHLTSDQWRS-HNSFTCQVTHE-GDTVE 211 (218)
T ss_dssp TTEEC----------------------------CEEEE--EEEEEEHHHHHT-CSCEEEEEEET-TEEEE
T ss_pred CCEECcCceecCccc----c-cCC---------cEEEE--EEEEEeHHHccC-CCeEEEEEEeC-CCccc
Confidence 999876532110000 0 012 22222 568899898889 99999999998 55443
No 217
>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*
Probab=99.82 E-value=6.1e-19 Score=141.88 Aligned_cols=197 Identities=14% Similarity=0.174 Sum_probs=118.0
Q ss_pred CCceeeecCCcEEEEEEecCCCCC--ceEEEeeCCEEeeeCC--eeEEEEcccCcCCCeeEEE-EEeCCceeEeccceEE
Q psy14542 103 SNQVVVDVGHRIELHCRVSPKRLS--SAKAWLKDGLVLRRNS--DEVLVLDRVQREDAGMYQC-HIEDGKYHMLSSGELI 177 (371)
Q Consensus 103 ~~~~~~~~g~~v~l~C~~~~~~~~--~~v~W~~~~~~~~~~~--~~~~~~~~~~~~~~g~y~~-~~~~~~~~~~~~~~l~ 177 (371)
++......|++++|.|.+.+.+.+ ..+.|+|++..+.... ........... ..+.+.. ...........+.+|.
T Consensus 8 p~~V~~~~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~sL~ 86 (225)
T 4fmk_A 8 LPEVRGRLGGTVELPCHLLPPTTERVSQVTWQRLDGTVVAAFHPSFGVDFPNSQF-SKDRLSFVRARPETNADLRDATLA 86 (225)
T ss_dssp CSEEEEETTSCEEECCEECSSCCCEEEEEEEECTTSCEEEEEETTTEEECCCTTS-CTTTEEECCCSCSCCSSCCBCCEE
T ss_pred CCEEEEecCCCEEEEEEEECCCCCceeEEEEEECCCcceEEEecccceeeccccc-cccceeeeccccccccccCcEEEE
Confidence 344555899999999999876652 2489999765432110 00111111000 0000000 0000011112346799
Q ss_pred EEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEee-cCCCCceEE
Q psy14542 178 IHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQ-GNPLPTIKW 256 (371)
Q Consensus 178 i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~-~~p~~~v~W 256 (371)
|.+++.+| +|.|+|.+.+. .+...... ..+.+. .+|.....+.... ...++...+.|.+. +.|++.+.|
T Consensus 87 I~~v~~~D-~G~Y~C~~~~~-~~~~~~~~--~~~~~~-----~~~~~~~~~~~~~-~~~~~~~~~~c~~~~~~P~~~~~w 156 (225)
T 4fmk_A 87 FRGLRVED-EGNYTCEFATF-PNGTRRGV--TWLRVI-----AQPENHAEAQEVT-IGPQSVAVARCVSTGGRPPARITW 156 (225)
T ss_dssp ECSCCGGG-CEEEEEEEEEE-TTEEEEEE--EEEEEE-----BCCEEEEEECCBC-CSSSCEEEEEEEEEEEBSCCEEEE
T ss_pred EccCCHHH-CcceEEEEEeC-CCcceeee--eeeeee-----cCCceeeccccee-ecceeeeeeeeeecCCCCCCEEEE
Confidence 99999999 99999999887 44333222 034444 4444444444444 66677777777754 578889999
Q ss_pred EeCCcccccCCceE-------EecceEEEeccCCCCCeEEEEEEEcCCCCceeE--EEEEEec
Q psy14542 257 YKQDSPVEESDRIQ-------RIGSSLSISHVEESDSGVWNCVANNSEGQDKMQ--LFIQYAH 310 (371)
Q Consensus 257 ~~~~~~~~~~~~~~-------~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~--~~l~v~~ 310 (371)
++++..+....... ...+.|.|..+..+|+|.|+|.|.|..+..... +.|.|.+
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~~~~~~~~~v~l~V~Y 219 (225)
T 4fmk_A 157 ISSLGGEAKDTQEPGIQAGTVTIISRYSLVPVGRADGVKVTCRVEHESFEEPILLPVTLSVRY 219 (225)
T ss_dssp ECSSCCEEEEEEEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCBTT
T ss_pred EECCccccCCcceEEecCCCEEEEEEEEEeeCCHHHCCEEEEEEEcCCCCeEEEEEEEEEEEE
Confidence 99887554332211 123469999999999999999999998876544 4454443
No 218
>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*
Probab=99.81 E-value=3.9e-19 Score=145.51 Aligned_cols=176 Identities=18% Similarity=0.248 Sum_probs=112.1
Q ss_pred cceEEEeCCCcEEEeccCcEEEEEEecCCCCCC-----eeEEEeCCEEEe----------------e-C----------C
Q psy14542 10 SLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSS-----AKAWLKDGLVLR----------------R-N----------S 57 (371)
Q Consensus 10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~-----~~~W~~~~~~~~----------------~-~----------~ 57 (371)
.+.+.+.+.....+.+|++++|.|.+. +.|.+ .+.|++++.... . . .
T Consensus 2 ~~~v~v~~p~~~~v~~G~~v~L~C~~~-g~p~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (248)
T 3pv7_A 2 DLKVEMMAGGTQITPLNDNVTIFCNIF-YSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWRLKSG 80 (248)
T ss_dssp CEEEECSTTSEEEEETTSCEEECCEEE-ESSCCCTTSCEEEEEEECSSCCCEEEEEEEESSCEEESSTTCBCCHHHHTTT
T ss_pred ceEEEEeCCCCeEEeCCCCEEEeeEEe-cCCCcCCCceEEEEEEEcCCCCcceEEEEecCCcccccCCceEEEeccCCCC
Confidence 355666666657899999999999654 33333 499999521100 0 0 3
Q ss_pred eeEEEEccCCcCCCeEEEEEEEcCCCCeEEEEEEEEecceeeEecCCceeeecCCcEEEEEEecC-CCCCc-eEEEeeCC
Q psy14542 58 DEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGELVEIASSNQVVVDVGHRIELHCRVSP-KRLSS-AKAWLKDG 135 (371)
Q Consensus 58 ~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~v~l~C~~~~-~~~~~-~v~W~~~~ 135 (371)
+.+|.|.+++.+|+|.|+|.+.+..+.....+.|.|. .+|.+...+......|+.+.|.|.+.+ .|. + .+.|++++
T Consensus 81 ~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~L~V~-~~P~v~~~~~~~~~~~~~~~L~C~~~g~~P~-pi~v~W~k~g 158 (248)
T 3pv7_A 81 DASLRLPGIQLEEAGEYRCEVVVTPLKAQGTVQLEVV-ASPASRLLLDQVGMKENEDKYMCESSGFYPE-AINITWEKQT 158 (248)
T ss_dssp BCCEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEE-BCCEEEEECC--------CEEEEEEEEEBSS-CCEEEEEEEC
T ss_pred cEEEEeCCCCHHHCeEEEEEEEeCCccceeEEEEEEe-cCCceEEecCCccccCCCcEEEEEEccEECC-CeEEEEEECC
Confidence 4569999999999999999999887777788889988 566666555544567888899999988 566 5 99999998
Q ss_pred EEeeeCCee--EEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccce
Q psy14542 136 LVLRRNSDE--VLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGA 201 (371)
Q Consensus 136 ~~~~~~~~~--~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~ 201 (371)
..+...... ............| .+.. .+.|.|.....+| .|.|+|.+.|. .+.
T Consensus 159 ~~l~~~~~~~~~~~~~~~~~~~~~---------~~~~--~s~L~i~~~~~~d-~g~YtC~a~n~-~~~ 213 (248)
T 3pv7_A 159 QKFPHPIEISEDVITGPTIKNMDG---------TFNV--TSCLKLNSSQEDP-GTVYQCVVRHA-SLH 213 (248)
T ss_dssp SSSCSCEEECTTEEEEEEEECTTS---------CEEE--EEEEECC--CCCT-TCEEEEEEECT-TCS
T ss_pred ccCCCccccccceeecccEECCCC---------CEEE--EEEEEEcCccccC-CCEEEEEEECC-CCC
Confidence 644321100 0000001111222 2222 2578888888888 99999999998 544
No 219
>3nl4_L Antigen binding fragment, immunoglobulin IGG - LI; FAB, rabbit, conformation-specific, amyloid, immune system; 1.54A {Oryctolagus cuniculus} PDB: 4hbc_L
Probab=99.81 E-value=5.4e-19 Score=141.15 Aligned_cols=168 Identities=16% Similarity=0.287 Sum_probs=114.9
Q ss_pred ceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCC-----EEEe------------------eCCeeEEEEccCC
Q psy14542 11 LSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDG-----LVLR------------------RNSDEVLVLDRVQ 67 (371)
Q Consensus 11 ~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~-----~~~~------------------~~~~~~l~i~~~~ 67 (371)
+.+...|.. +.+.+|++++|.|.+ .+.+.+.+.|+|++ ..+. .....+|.|.+++
T Consensus 2 ~~v~~~p~~-~~v~~G~~v~L~C~~-~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~ 79 (213)
T 3nl4_L 2 VVMTQTPAS-VSEPVGGTVTIKCQA-SQSISSYLAWYQQKPGQRPRLLIYETSTLASGVPSRFKGSGSGTDFTLTISDLE 79 (213)
T ss_dssp CCEEEECSE-EEEETTCCEEEEEEE-SSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEECSCC
T ss_pred ccEEeCCCe-EEEcCCCCEEEEEEe-cCCCCceEEEEEECCCCCcEEEEEeCCccCCCCCccEEEecCCCEEEEEECCCC
Confidence 456666776 899999999999965 45578899999832 1111 1145589999999
Q ss_pred cCCCeEEEEEEEcCCCC---eEEEEEEEEe--cceeeEecC-CceeeecCCcEEEEEEecC-CCCCceEEEeeCCEEeee
Q psy14542 68 REDAGMYQCHVSADDDS---AQMSAQVILG--GELVEIASS-NQVVVDVGHRIELHCRVSP-KRLSSAKAWLKDGLVLRR 140 (371)
Q Consensus 68 ~~d~G~Y~C~~~~~~~~---~~~~~~l~v~--~~~~~~~~~-~~~~~~~g~~v~l~C~~~~-~~~~~~v~W~~~~~~~~~ 140 (371)
.+|+|.|+|.+.+..+. ......|.|. ..+|.+... +...+.+|+.++|.|.+.+ .|. +.+.|++++..+..
T Consensus 80 ~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~v~l~C~~~g~~P~-~~v~W~k~g~~~~~ 158 (213)
T 3nl4_L 80 CADAATYYCQSTYENPTYVSFGGGTEVGVKGDPVAPTVLIFPPSADLVATGTVTIVCVANKYFPD-VTVTWEVDGTTQTT 158 (213)
T ss_dssp GGGCEEEEEEECCSSTTTCEECCCEEEEEECCCBCCEEEEECCCHHHHTTSEEEEEEEEEEEBSC-CEEEEEETTEECCS
T ss_pred hHHCEEEEEecCCCCceeEEeCCCeEEEEeCCCcCCeEEEeCCchhhccCCcEeEEEEEecccCC-cEEEEEeCCccCCC
Confidence 99999999999987653 2233445553 244444432 2223367999999999988 664 89999999988764
Q ss_pred CCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeecc
Q psy14542 141 NSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNK 197 (371)
Q Consensus 141 ~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~ 197 (371)
... ..........|.| .. .+.|.|.++..+| .|.|+|.|. .
T Consensus 159 ~~~---~~~~~~~~~~~~~---------~~--~s~L~i~~~~~~d-~g~Y~C~a~-~ 199 (213)
T 3nl4_L 159 GIE---NSKTPQNSADCTY---------NL--SSTLTLTSTEYNS-HKEYTCKVT-Q 199 (213)
T ss_dssp SEE---EEECCCCTTTCCE---------EE--EEEEEEEHHHHHT-CCEEEEEEE-E
T ss_pred Cee---cccCcccCCCCeE---------EE--EEEEEecHHHcCC-CCeEEEEEE-e
Confidence 310 1111112222322 22 2679999999999 999999998 5
No 220
>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}
Probab=99.81 E-value=1.2e-19 Score=145.39 Aligned_cols=164 Identities=12% Similarity=0.128 Sum_probs=111.8
Q ss_pred CcEEEeccCcEEEEEEecCCCCCC---eeEEEeCCEEEeeC------------------------------CeeEEEEcc
Q psy14542 19 GQVVVDVGHRIELHCRVSPKRLSS---AKAWLKDGLVLRRN------------------------------SDEVLVLDR 65 (371)
Q Consensus 19 ~~~~~~~G~~v~l~C~~~~~~~~~---~~~W~~~~~~~~~~------------------------------~~~~l~i~~ 65 (371)
..+.+.+|++++|.|.+.. .+.+ .+.|+|++..+... .+.+|.|.+
T Consensus 7 ~~vtv~~G~~v~L~C~v~~-~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~ 85 (218)
T 4frw_A 7 DVVTVVLGQDAKLPCFYRG-DSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLLRN 85 (218)
T ss_dssp SEEEEETTSCEEECCEECC-CTTCEEEEEEEEEECSSSCEEEEEEEETTTEEEECGGGTTTEECCSSCCCTTBCCEEESS
T ss_pred CeEEEEcCCCEEEEEEEEc-CCCCCccEEEEEECCCCCCceeEEEecCCCCeEeCccccceEEEecccccCCeEEEEEee
Confidence 3388999999999996543 3333 48999965321100 345799999
Q ss_pred CCcCCCeEEEEEEEcCCCCeE-EEEEEEEecceee-EecCCceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCe
Q psy14542 66 VQREDAGMYQCHVSADDDSAQ-MSAQVILGGELVE-IASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSD 143 (371)
Q Consensus 66 ~~~~d~G~Y~C~~~~~~~~~~-~~~~l~v~~~~~~-~~~~~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~ 143 (371)
++.+|+|.|.|.+.+..+... ....+.+...++. ........+..|+.+.+.|.+.+.|. +.++|++++..+.....
T Consensus 86 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~p~-p~i~W~~~~~~~~~~~~ 164 (218)
T 4frw_A 86 AVQADEGEYECRVSTFPAGSFQARLRLRVLVPPLPSLNPGPALEEGQGLTLAASCTAEGSPA-PSVTWDTEVKGTTSSRS 164 (218)
T ss_dssp CCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCCCEEEECSCEETTCCSEEEEEEEEEEBSC-CEEEEEESSCCEEEEEE
T ss_pred ccHHHCCceeEEEEeccCceeeeEEEEEEeeeccceeeeeeeeeeeeccccceeeeccCCcC-ceEEEEECCcccccCce
Confidence 999999999999987655443 3344444422222 22233334478999999999998887 89999999876654321
Q ss_pred eEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeee
Q psy14542 144 EVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSV 206 (371)
Q Consensus 144 ~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~ 206 (371)
.. . ++... ..+.|.|.++..+| .|.|+|.|.|. .|......
T Consensus 165 ~~---------~---------~~~~~--~~s~L~i~~~~~~d-~g~YtC~a~N~-~g~~~~~~ 205 (218)
T 4frw_A 165 FK---------H---------SRSAA--VTSEFHLVPSRSMN-GQPLTCVVSHP-GLLQDQRI 205 (218)
T ss_dssp EE---------C---------SSSEE--EEEEEEECCCGGGT-TCEEEEEEECT-TCSSCEEE
T ss_pred Ee---------c---------CCcEE--EEEEEEEeeCCHHh-CeEEEEEEEeC-CCCeEEEE
Confidence 10 0 11111 12579999999999 99999999998 66555444
No 221
>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A
Probab=99.81 E-value=3.1e-19 Score=143.13 Aligned_cols=189 Identities=13% Similarity=0.212 Sum_probs=115.5
Q ss_pred EecCCceeeecCCcEEEEEEecCC-CCCceEEEeeCCEEeeeCCeeEEEEcccC--cCCCeeEEEEEeCCceeEe---cc
Q psy14542 100 IASSNQVVVDVGHRIELHCRVSPK-RLSSAKAWLKDGLVLRRNSDEVLVLDRVQ--REDAGMYQCHIEDGKYHML---SS 173 (371)
Q Consensus 100 ~~~~~~~~~~~g~~v~l~C~~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~--~~~~g~y~~~~~~~~~~~~---~~ 173 (371)
+...+...+.+|++++|.|.+.+. +. +.+.|++.... ......+...... ....+ ..+++.+. .+
T Consensus 4 v~~~p~~~v~~G~~v~L~C~~~~~~~~-~~v~W~k~~~~--~~~~~~~~~~~~~~~~~~~~------~~~r~~~~~~~~~ 74 (218)
T 3s96_B 4 LTQSSSASFSLGASAKLTCTLNSQHST-YTIEWYQQQPL--KPPKYVMELKKDGSHSTGDG------IPDRFSGSSSGAD 74 (218)
T ss_dssp EECCSEEEEETTSCEEEEEEECGGGTT-CCEEEEEECTT--SCCEEEEEECTTSCEEECSS------CCTTEEEEEETTE
T ss_pred EEeCCcEEECCCCcEEEEEECCCCCCC-cEEEEEEECCC--CCeEEEEEEcccCccccCCC------cccceEEecCCce
Confidence 334444445899999999999887 66 89999983210 0001111111100 00000 01233222 23
Q ss_pred ceEEEEEeecCCccceeEEEeeccccc-----eeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeec
Q psy14542 174 GELIIHQVDESDRYRSYQCRGVNKLTG-----ASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQG 248 (371)
Q Consensus 174 ~~l~i~~~~~~d~~g~y~C~~~~~~~~-----~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~ 248 (371)
..|.|.+++.+| +|.|.|.+.+. .+ ...... .|.|..... .+|.+........ ...|+.+.|.|.+.+
T Consensus 75 ~~L~I~~v~~~D-~G~Y~C~~~~~-~~~~~~~~~~~~~---~l~V~~~~~-~~P~~~~~~~~~~-~~~~~~v~L~C~~~g 147 (218)
T 3s96_B 75 RYLSISNIQPED-EAIYICGVGDT-IKEQFVYVFGGGT---KVTVLGQPK-STPTLTVFPPSSE-ELKENKATLVCLISN 147 (218)
T ss_dssp EEEEESSCCGGG-CEEEEEEEEEE-ETTEEEEEECCCE---EEEEESCCC-BCCEEEEECCCHH-HHHTTEEEEEEEEEE
T ss_pred EEEEEccCCccc-CEEEEEEEecC-CCCceeEEEcCcE---EEEEecCCC-CCceEEeeCCCcc-cccCCcEEEEEEECc
Confidence 579999999999 99999999987 43 122222 566653211 3455554333333 556789999999988
Q ss_pred -CCCC-ceEEEeCCcccccCCce---------EEecceEEEeccCCCCCeEEEEEEEcCCCCceeEE
Q psy14542 249 -NPLP-TIKWYKQDSPVEESDRI---------QRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQL 304 (371)
Q Consensus 249 -~p~~-~v~W~~~~~~~~~~~~~---------~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~ 304 (371)
.|.+ .+.|+++|..+..+... ....+.|.|.....+|+|.|+|.|.|..+....++
T Consensus 148 ~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~ 214 (218)
T 3s96_B 148 FSPSGVTVAWKANGTPITQGVDTSNPTKEGNKFMASSFLHLTSDQWRSHNSFTCQVTHEGDTVEKSL 214 (218)
T ss_dssp EBSSCCEEEEEETTEEC--------------CEEEEEEEEEEHHHHHTCSCEEEEEEETTEEEEEEE
T ss_pred ccCCCeEEEEEECCEECcCceecCcccccCCcEEEEEEEEEeHHHccCCCeEEEEEEeCCCcccccc
Confidence 5666 89999999887653111 11123488888888899999999999987655443
No 222
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A
Probab=99.81 E-value=6e-19 Score=136.25 Aligned_cols=162 Identities=16% Similarity=0.276 Sum_probs=112.2
Q ss_pred ecCCcEEEEEEec--CCCCCceEEEee--CCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecC
Q psy14542 109 DVGHRIELHCRVS--PKRLSSAKAWLK--DGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDES 184 (371)
Q Consensus 109 ~~g~~v~l~C~~~--~~~~~~~v~W~~--~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~ 184 (371)
..|++++|.|... +.+. +.|.|++ ++..+...... ...+ ..++++.+..+++|.|.+++.+
T Consensus 12 ~~G~sv~L~~~~~~~~~~~-~~i~W~k~~~~~~i~~~~~~-----------~~~~---~~~~R~~~~~ngsL~I~~v~~~ 76 (182)
T 1hnf_A 12 ALGQDINLDIPSFQMSDDI-DDIKWEKTSDKKKIAQFRKE-----------KETF---KEKDTYKLFKNGTLKIKHLKTD 76 (182)
T ss_dssp ETTSCEEECCTTCCCCSSE-EEEEEEEGGGCCEEEEECGG-----------GCEE---ESCTTEEECTTSCEEECSCCGG
T ss_pred ecCCCEEEeCCcccccCcC-CEEEEEECCCCcEEEEEeCc-----------cCCC---CCCCeEEECCCCCEEECCCChh
Confidence 7899999999442 2233 7899999 87765321100 0000 1145777778889999999999
Q ss_pred CccceeEEEeeccccceee--eeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEeCCcc
Q psy14542 185 DRYRSYQCRGVNKLTGASL--LSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSP 262 (371)
Q Consensus 185 d~~g~y~C~~~~~~~~~~~--~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~ 262 (371)
| +|.|+|.+.+. .|... ..+ .|.|.+. ...|.+.. .+..+.|+|.+.+.|.+.|.|+++|..
T Consensus 77 D-sG~Y~c~~~n~-~g~~~~~~~~---~L~V~~~--~~~P~i~~---------~~~~v~L~C~~~~~p~~~~~W~~~g~~ 140 (182)
T 1hnf_A 77 D-QDIYKVSIYDT-KGKNVLEKIF---DLKIQER--VSKPKISW---------TCINTTLTCEVMNGTDPELNLYQDGKH 140 (182)
T ss_dssp G-CEEEEEEEEET-TSCEEEEEEE---EEEEECC--CCCCEEEE---------ETTTTEEEEECSSCSSCEEEEEESSCE
T ss_pred h-CEEEEEEEEeC-CCceeEEEEE---EEEEcCc--CCCCEEEE---------ccCcEEEEeEccCCCCCEEEEEECCEE
Confidence 9 99999999987 55433 233 5666532 12333321 234689999999989999999999988
Q ss_pred cccCCceEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEE
Q psy14542 263 VEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQY 308 (371)
Q Consensus 263 ~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 308 (371)
+ .. ....|.+.. ..+|+|.|+|.|.|..|..+....+..
T Consensus 141 l-~~-----~~~~i~~~~-~~~d~G~Y~C~a~N~~~~~~s~~~~~c 179 (182)
T 1hnf_A 141 L-KL-----SQRVITHKW-TTSLSAKFKCTAGNKVSKESSVEPVSC 179 (182)
T ss_dssp E-EE-----ESSCEEEEC-CSCEEEEEEEEEECSSCEEEEEEEEEE
T ss_pred C-CC-----CCcEEEEec-ccCCCcEEEEEEEeCCCCcEEcceecC
Confidence 7 21 234455543 478999999999999999887766643
No 223
>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*
Probab=99.81 E-value=7.4e-19 Score=140.35 Aligned_cols=170 Identities=19% Similarity=0.274 Sum_probs=115.9
Q ss_pred ceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCC---E--EEee------------------CCeeEEEEccCC
Q psy14542 11 LSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDG---L--VLRR------------------NSDEVLVLDRVQ 67 (371)
Q Consensus 11 ~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~---~--~~~~------------------~~~~~l~i~~~~ 67 (371)
+.+...|.. +.+.+|++++|.|.+. +.+.+.+.|+|.+ . .+.. ....+|.|.+++
T Consensus 2 ~~v~~~p~~-~~v~~G~~v~L~C~~~-~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~ 79 (213)
T 3r06_A 2 IQMTQSPSS-LPASLGDRVTINCQAS-QDISNYLNWYQQKPGKAPKLLIYYTNKLADGVPSRFSGSGSGRDSSFTISSLE 79 (213)
T ss_dssp CCEEEECSE-EEECTTCCEEEEEEES-SCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCC
T ss_pred CeeEeCCCE-EEecCCCcEEEEEEeC-CCcCceEEEEEECCCCCcEEEEEEcCcCCCCCCCcEEEeccCCEEEEEECCCC
Confidence 456666666 8999999999999655 4478899999821 1 1110 145589999999
Q ss_pred cCCCeEEEEEEEcCCCCe-EEEEEEEEe--cceeeEecCCcee-eecCCcEEEEEEecCCCC-CceEEEeeCCEEeeeCC
Q psy14542 68 REDAGMYQCHVSADDDSA-QMSAQVILG--GELVEIASSNQVV-VDVGHRIELHCRVSPKRL-SSAKAWLKDGLVLRRNS 142 (371)
Q Consensus 68 ~~d~G~Y~C~~~~~~~~~-~~~~~l~v~--~~~~~~~~~~~~~-~~~g~~v~l~C~~~~~~~-~~~v~W~~~~~~~~~~~ 142 (371)
.+|+|.|+|.+.+..+.. .....|.|. ..+|.+...+... ...|+.++|.|.+.+.++ .+.+.|++++..+....
T Consensus 80 ~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~~~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~ 159 (213)
T 3r06_A 80 SEDIGSYYCQQYYNYPWTFGPGTKLEIKRADAKPTVSIFPPSSEQLGTGSATLVCFVNNFYPKDINVKWKVDGSEKRDGV 159 (213)
T ss_dssp GGGCSEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCEEEEEEETTEEECTTE
T ss_pred cccCEEEEEecccCCceEEcCCceEEEeccCCCceeeeeCCCceecCCCCcEEEEEEeeecCCceEEEEEECCcccCCce
Confidence 999999999998765422 233456662 2445554433322 357888999999987644 36999999999876531
Q ss_pred eeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeecc
Q psy14542 143 DEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNK 197 (371)
Q Consensus 143 ~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~ 197 (371)
+..........|.|.. .+.|.|.....+| .|.|+|.+.|.
T Consensus 160 ---~~~~~~~~~~~g~~~~-----------~s~l~i~~~~~~d-~g~YtC~v~n~ 199 (213)
T 3r06_A 160 ---LQSVTDQDSKDSTYSL-----------SSTLSLTKADYER-HNLYTCEVTHK 199 (213)
T ss_dssp ---EEEECCCCTTTCCEEE-----------EEEEEEEHHHHHT-CCEEEEEEEET
T ss_pred ---EeccCceeCCCCcEEE-----------EEEEEeCHHHhcc-CCeEEEEEEec
Confidence 0111222233343322 2578899898899 99999999987
No 224
>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*
Probab=99.81 E-value=5.8e-19 Score=139.64 Aligned_cols=160 Identities=15% Similarity=0.205 Sum_probs=109.0
Q ss_pred EEEeccCcEEEEEEecC---CCCCCeeEEEeCCEEEe--------------------eCCeeEEEEccCCcCCCeEEEEE
Q psy14542 21 VVVDVGHRIELHCRVSP---KRLSSAKAWLKDGLVLR--------------------RNSDEVLVLDRVQREDAGMYQCH 77 (371)
Q Consensus 21 ~~~~~G~~v~l~C~~~~---~~~~~~~~W~~~~~~~~--------------------~~~~~~l~i~~~~~~d~G~Y~C~ 77 (371)
+.+.+|++++|.|.+.. +.+.+.+.|++++..+. .....+|.|.+++.+|+|.|+|.
T Consensus 4 v~v~~G~~v~L~C~~~~~~~~~~~~~~~W~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 83 (201)
T 1dr9_A 4 VTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTYECV 83 (201)
T ss_dssp EEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEESTTTTEEEECSCCGGGCEEEEEE
T ss_pred EEEEeCCCEEEecccCCCcccccccEEEEEeCCcEEEEEeCCceeecCcccceeEEccCCCcEEEEecccchhCeEEEEE
Confidence 67899999999996542 23567899999998762 11456899999999999999999
Q ss_pred EEcCCCCe-----EEEEEEEEecce--eeEecCCceeeecCCcEEEEEEec-CCCCCceEEEeeCCEEeeeCCeeEEEEc
Q psy14542 78 VSADDDSA-----QMSAQVILGGEL--VEIASSNQVVVDVGHRIELHCRVS-PKRLSSAKAWLKDGLVLRRNSDEVLVLD 149 (371)
Q Consensus 78 ~~~~~~~~-----~~~~~l~v~~~~--~~~~~~~~~~~~~g~~v~l~C~~~-~~~~~~~v~W~~~~~~~~~~~~~~~~~~ 149 (371)
+.+..+.. ...+.|.|...+ |.+... ....|+.+.|.|.+. +.|. +.++|++++..+..... .....
T Consensus 84 ~~~~~g~~~~~~~~~~~~l~V~~~~~~p~~~~~---~~~~g~~~~l~C~~~~g~P~-p~i~W~k~g~~l~~~~~-~~~~~ 158 (201)
T 1dr9_A 84 VLKYEKDAFKREHLAEVTLSVKADFPTPSISDF---EIPTSNIRRIICSTSGGFPE-PHLSWLENGEELNAINT-TVSQD 158 (201)
T ss_dssp EEECCTTSCEEEEEEEEEEEEECCCCCCEEEEE---ECSSTTEEEEEEEEEEESSC-EEEEEEESSCEECCSEE-EEEEC
T ss_pred EEcCCCCccccccccEEEEEEcCCCCCCceEec---cCCCCCeEEEEEecCCccCC-CEEEEEECCEECccccc-eEEec
Confidence 99876543 356777777321 222110 114588999999995 7777 89999999988764421 11110
Q ss_pred ccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeee
Q psy14542 150 RVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLS 205 (371)
Q Consensus 150 ~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~ 205 (371)
.+.+ .+. ...+..+...| .|.|+|.|.|. .+.....
T Consensus 159 ----~~~~---------~~~-----~~~~~~v~~~d-~g~Y~C~a~n~-~~~~s~~ 194 (201)
T 1dr9_A 159 ----PETE---------LYA-----VSSKLDFNMTT-NHSFMCLIKYG-HLRVNQT 194 (201)
T ss_dssp ----TTTC---------CEE-----EEEEEEEETTS-CEEEEEEEEET-TCCEEEE
T ss_pred ----CCCc---------EEE-----EEEEEEEEecC-CCEEEEEEecC-cceeeeE
Confidence 0111 111 11234556788 99999999998 6654443
No 225
>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...
Probab=99.81 E-value=3.9e-19 Score=141.74 Aligned_cols=164 Identities=15% Similarity=0.217 Sum_probs=112.2
Q ss_pred EEEeccCcEEEEEEecCCCCCCeeEEEeC--CEEE---e------------------eCCeeEEEEccCCcCCCeEEEEE
Q psy14542 21 VVVDVGHRIELHCRVSPKRLSSAKAWLKD--GLVL---R------------------RNSDEVLVLDRVQREDAGMYQCH 77 (371)
Q Consensus 21 ~~~~~G~~v~l~C~~~~~~~~~~~~W~~~--~~~~---~------------------~~~~~~l~i~~~~~~d~G~Y~C~ 77 (371)
+.+.+|++++|.|.+. +.+.+.|+|+ +... . .....+|.|.+++.+|+|.|+|.
T Consensus 10 ~~v~~G~~v~L~C~~~---~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~ 86 (211)
T 3tv3_L 10 ASGSPGQSITISCTGT---SNNFVSWYQQHAGKAPKLVIYDVNKRPSGVPDRFSGSKSGNTASLTVSGLQTDDEAVYYCG 86 (211)
T ss_dssp EEECTTCEEEEEEECC---CSSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEEESCCGGGCEEEEEE
T ss_pred EEEcCCCCEEEEEEEC---CCCeEEEEEECCCCCCEEEEEEecccCCCCcCcEEEEccCCEEEEEECCCChhHCEEEEEE
Confidence 7899999999999665 7788999993 2111 0 11456899999999999999999
Q ss_pred EEcCCC--CeEEEEEEEEec---ceeeEecCCce-eeecCCcEEEEEEecCCC-CCceEEEeeCCEEeeeCCeeEEEEcc
Q psy14542 78 VSADDD--SAQMSAQVILGG---ELVEIASSNQV-VVDVGHRIELHCRVSPKR-LSSAKAWLKDGLVLRRNSDEVLVLDR 150 (371)
Q Consensus 78 ~~~~~~--~~~~~~~l~v~~---~~~~~~~~~~~-~~~~g~~v~l~C~~~~~~-~~~~v~W~~~~~~~~~~~~~~~~~~~ 150 (371)
+.+..+ .....+.|.|.. .+|.+...+.. ....|+.++|.|.+.+.+ +.+.+.|+++|..+...... ..
T Consensus 87 ~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~----~~ 162 (211)
T 3tv3_L 87 SLVGNWDVIFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVET----TT 162 (211)
T ss_dssp EEETTTEEEECCCEEEEECCSCCBCCEEEEECCCHHHHHTTCEEEEEEEEEEBSSCCEEEEEETTEEECTTEEE----CC
T ss_pred EecCCCceeECCCceEEEeCCCCcCCeeEecCCchhhhcCCCeEEEEEeeeecCCCeEEEEEECCeecCCCccc----CC
Confidence 998766 234446666662 33444433322 224799999999998753 24799999999987643110 01
Q ss_pred cCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeee
Q psy14542 151 VQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLL 204 (371)
Q Consensus 151 ~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~ 204 (371)
......| .+.. .+.|.|.++..+| .|.|+|.+.|. .+....
T Consensus 163 ~~~~~~~---------~~~~--~s~L~i~~~~~~d-~g~Y~C~v~~~-~~~~~~ 203 (211)
T 3tv3_L 163 PSKQSNN---------KYAA--SSYLSLTPEQWKS-HRSYSCQVTHE-GSTVEK 203 (211)
T ss_dssp CEECTTS---------SEEE--EEEEEECHHHHHH-SSCEEEEEEET-TEEEEE
T ss_pred ceECCCC---------CEEE--EEEEEEcHHHhCC-CCeEEEEEEEC-CCCEEe
Confidence 1111222 2222 2578899999999 99999999998 554433
No 226
>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*
Probab=99.81 E-value=8.8e-19 Score=139.58 Aligned_cols=167 Identities=18% Similarity=0.283 Sum_probs=111.9
Q ss_pred EEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCC--EEE---e------------------eCCeeEEEEccCCcC
Q psy14542 13 IEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDG--LVL---R------------------RNSDEVLVLDRVQRE 69 (371)
Q Consensus 13 ~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~--~~~---~------------------~~~~~~l~i~~~~~~ 69 (371)
+.. |.. +.+.+|++++|.|.+ .+.+.+.+.|+|++ ..+ . .....+|.|.+++.+
T Consensus 4 v~q-p~~-~~v~~G~~v~L~C~~-~~~~~~~v~W~~~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~ 80 (210)
T 1lk3_L 4 LTQ-PPA-LTVSPGEKLTISCKA-SESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEAD 80 (210)
T ss_dssp EEC-CSE-EEECTTSCEEEEEEE-SSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred EEC-CCc-EEEcCCCCEEEEeeC-CCccCCCEEEEEECCCCCeEEEEEccccccCCccccEEEEecCCEEEEEECCCCHH
Confidence 444 555 889999999999965 45566789999832 111 0 013458999999999
Q ss_pred CCeEEEEEEEcCCCCeE-EEEEEEEec--ceeeEecCC-ceeeecCCcEEEEEEecCCC-CCceEEEeeCCEEeeeCCee
Q psy14542 70 DAGMYQCHVSADDDSAQ-MSAQVILGG--ELVEIASSN-QVVVDVGHRIELHCRVSPKR-LSSAKAWLKDGLVLRRNSDE 144 (371)
Q Consensus 70 d~G~Y~C~~~~~~~~~~-~~~~l~v~~--~~~~~~~~~-~~~~~~g~~v~l~C~~~~~~-~~~~v~W~~~~~~~~~~~~~ 144 (371)
|+|.|+|.+.+..+... ....|.|.. .+|.+...+ ......|+.++|.|.+.+.+ .+..+.|+++|..+......
T Consensus 81 D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~ 160 (210)
T 1lk3_L 81 DTAIYFCQQSWNGPLTFGAGTKLELKRADAAPTVSIFPPSTEQLATGGASVVCLMNNFYPRDISVKWKIDGTERRDGVLD 160 (210)
T ss_dssp GCEEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEECCTTEEE
T ss_pred HCeEEEEEEEcCCCceeCCCEEEEEcCCCcCCeEEEECCchhhccCCcEEEEEEEEeEeCCceEEEEEeCCccCCCCceE
Confidence 99999999998765432 234566652 244444322 22235799999999998743 32489999999987644100
Q ss_pred EEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeecc
Q psy14542 145 VLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNK 197 (371)
Q Consensus 145 ~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~ 197 (371)
.........|.| .. .+.|.|.++..+| .|.|+|.+.|.
T Consensus 161 ---~~~~~~~~~~~~---------~~--~s~L~i~~~~~~d-~G~Y~C~a~n~ 198 (210)
T 1lk3_L 161 ---SVTDQDSKDSTY---------SM--SSTLSLTKADYES-HNLYTCEVVHK 198 (210)
T ss_dssp ---EECCCCTTTCCE---------EE--EEEEEEEHHHHHT-CCEEEEEEECT
T ss_pred ---ccCCccCCCCCE---------EE--EEEEEEChHHhcc-CCcEEEEEEec
Confidence 011111222222 21 2579999999999 99999999987
No 227
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*
Probab=99.81 E-value=2.5e-19 Score=148.49 Aligned_cols=187 Identities=19% Similarity=0.364 Sum_probs=118.0
Q ss_pred eeeecCCcEEEEEEec---CCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeE-----eccceEE
Q psy14542 106 VVVDVGHRIELHCRVS---PKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHM-----LSSGELI 177 (371)
Q Consensus 106 ~~~~~g~~v~l~C~~~---~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~-----~~~~~l~ 177 (371)
..+.+|+.++|.|.+. +.+. +.+.|++++...... ...+..........+.| .++..+ ..+..|.
T Consensus 15 ~~v~~G~~v~L~C~~~~~~~~~~-~~v~W~k~~~~~~~~-~~~~~~~~~~~~~~~~~-----~~r~~~~~~~~~~~~~L~ 87 (268)
T 3mj6_A 15 LRVHVGESVLMGCVVQRTEEKHV-DRVDWLFSKDKDDAS-EYVLFYYSNLSVPTGRF-----QNRSHLVGDTFHNDGSLL 87 (268)
T ss_dssp EEEETTCCEEECCBCCCSSCCCE-EEEEEEEESSSTTCC-EEEEEEETTEEEECGGG-----TTTEEECSCTTTTBCCEE
T ss_pred eEEecCCcEEEEEEeecCCCCce-EEEEEEEeCCCCCce-EEEEEEcCCCcccCccc-----cCceEEeecCCCCEEEEE
Confidence 3458999999999997 4444 789999965422111 01111100000000000 122222 1236799
Q ss_pred EEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEe---ecCCCCce
Q psy14542 178 IHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSA---QGNPLPTI 254 (371)
Q Consensus 178 i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~---~~~p~~~v 254 (371)
|.+++.+| +|.|+|.+.+. .+...... ...|.|.. ..| .... +..|+.+.|.|.+ .+.|.+.+
T Consensus 88 I~~v~~~D-~G~Y~C~~~~~-~~~~~~~~-~~~l~V~~----~~p------~~~~-v~~G~~v~L~C~~~~~~~~p~~~v 153 (268)
T 3mj6_A 88 LQDVQKAD-EGIYTCEIRLK-NESMVMKK-PVELWVLP----EEP------RDLR-VRVGDTTQMRCSIQSTEEKRVTKV 153 (268)
T ss_dssp ECSCCGGG-CEEEEEEEEET-TCCCEEEE-EEEEEEEC----CCC------SEEE-EETTCCEEECCBCEESSSSCCCEE
T ss_pred ECCCCHhH-CEEEEEEEEec-CCcceEEE-EEEEEEec----cCC------Cccc-cccCCcEEEEEEecCCCCCCccce
Confidence 99999999 99999999986 43332222 01444431 111 2333 8899999999999 56788999
Q ss_pred EEEeCCccc-cc-----------------CC----ceE------EecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEE
Q psy14542 255 KWYKQDSPV-EE-----------------SD----RIQ------RIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFI 306 (371)
Q Consensus 255 ~W~~~~~~~-~~-----------------~~----~~~------~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 306 (371)
.|++++... .. .. ++. ..++.|.|.++..+|+|.|+|.|.|..|.....+.|
T Consensus 154 ~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l 233 (268)
T 3mj6_A 154 NWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVL 233 (268)
T ss_dssp EEEEECTTCSSCEEEEEEETTSSSCEEECSSTTTTTEEECSCGGGTBCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred EEEecCCCCCcceeEEEecCCCCccccccccccccceEeeccCCCCeEEEEECcCChhhCeEEEEEEEcCCceEEEEEEE
Confidence 999954321 11 01 111 124689999999999999999999999999999999
Q ss_pred EEecCcc
Q psy14542 307 QYAHGKY 313 (371)
Q Consensus 307 ~v~~~p~ 313 (371)
.|...++
T Consensus 234 ~V~~~~p 240 (268)
T 3mj6_A 234 HVVQDEF 240 (268)
T ss_dssp EEECC--
T ss_pred EEEcCCC
Confidence 9955443
No 228
>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...
Probab=99.81 E-value=1.6e-18 Score=138.23 Aligned_cols=167 Identities=16% Similarity=0.268 Sum_probs=110.7
Q ss_pred EEEeCCCcEEEeccCcEEEEEEecCCCC--CCeeEEEeCC--EEE---e------------------eCCeeEEEEccCC
Q psy14542 13 IEMSPSGQVVVDVGHRIELHCRVSPKRL--SSAKAWLKDG--LVL---R------------------RNSDEVLVLDRVQ 67 (371)
Q Consensus 13 ~~~~p~~~~~~~~G~~v~l~C~~~~~~~--~~~~~W~~~~--~~~---~------------------~~~~~~l~i~~~~ 67 (371)
+.. |.. +.+.+|++++|.|.+..... .+.+.|+|++ ..+ . .....+|.|.+++
T Consensus 4 v~~-p~~-~~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~ 81 (212)
T 1q0x_L 4 VTQ-ESA-LTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGDKAALTITGAQ 81 (212)
T ss_dssp EEE-CSE-EEECTTCCEEEEEEESSSCCCGGGCCEEEEEETTTEEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCC
T ss_pred EEC-CCe-EeecCCCCEEEEEEecccccCCCCeEEEEEeCCCCCceEEEEcCcccCCcccccEEEEeeCCEEEEEECCCC
Confidence 444 555 88999999999996554332 4679999852 221 0 0134589999999
Q ss_pred cCCCeEEEEEEEcCCCCe-EEEEEEEEec---ceeeEecCCc-eeeecCCcEEEEEEecCCCC-CceEEEeeCCEEeeeC
Q psy14542 68 REDAGMYQCHVSADDDSA-QMSAQVILGG---ELVEIASSNQ-VVVDVGHRIELHCRVSPKRL-SSAKAWLKDGLVLRRN 141 (371)
Q Consensus 68 ~~d~G~Y~C~~~~~~~~~-~~~~~l~v~~---~~~~~~~~~~-~~~~~g~~v~l~C~~~~~~~-~~~v~W~~~~~~~~~~ 141 (371)
.+|+|.|.|.+.+..+.. .....|.|.. .+|.+...+. .....|+.++|.|.+.+.++ +..+.|++++..+...
T Consensus 82 ~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~ 161 (212)
T 1q0x_L 82 TEDEAIYFCALWSNNKLVFGGGTKLTVLGQPKSSPTVTLFPPSSEELSTAKATLVCTITDFYPGVVTVDWKVDGTPVTAG 161 (212)
T ss_dssp GGGCEEEEEEEECSSCEEECCCEEEEECCSCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTT
T ss_pred ccCCEEEEEEEecCchhhcCCCeEEEEecCCCCCCeeEEeCCCHHHccCCcEEEEEEEEEEeCCCeEEEEEECCEeCCCC
Confidence 999999999999865432 2234566631 3444443222 22257899999999988544 2489999999887644
Q ss_pred CeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeecc
Q psy14542 142 SDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNK 197 (371)
Q Consensus 142 ~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~ 197 (371)
.. .........|.| .. .+.|.|..+..+| .|.|+|.|.|.
T Consensus 162 ~~----~~~~~~~~~g~~---------~~--~s~L~i~~~~~~d-~g~Y~C~a~n~ 201 (212)
T 1q0x_L 162 ME----TTQPSKQSNNKY---------MA--SSYLTLTARAWER-HSSYSCQVTHE 201 (212)
T ss_dssp EE----ECCCEECTTSCE---------EE--EEEEEEEHHHHTT-CCEEEEEEEET
T ss_pred ee----cCCceeCCCCCE---------EE--EEEEEEcHHHccC-CCcEEEEEEeC
Confidence 11 111111122222 11 2578999999999 99999999987
No 229
>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A
Probab=99.80 E-value=1.5e-18 Score=138.72 Aligned_cols=182 Identities=20% Similarity=0.264 Sum_probs=113.1
Q ss_pred ceeeecCCcEEEEEEecCC------CCCceEEEeeCCEEeeeCCeeEEEEcc----cCcCCCeeEEEEEeCCceeEec--
Q psy14542 105 QVVVDVGHRIELHCRVSPK------RLSSAKAWLKDGLVLRRNSDEVLVLDR----VQREDAGMYQCHIEDGKYHMLS-- 172 (371)
Q Consensus 105 ~~~~~~g~~v~l~C~~~~~------~~~~~v~W~~~~~~~~~~~~~~~~~~~----~~~~~~g~y~~~~~~~~~~~~~-- 172 (371)
...+.+|++++|.|.+.+. ...+.+.|+|++..... ...+.... ..... .+++.+..
T Consensus 9 ~v~v~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~k~~~~~~~--~~~~~~~~~~~~~~~~~---------~~r~~~~~~~ 77 (214)
T 2zg1_A 9 SVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYY--AEVVATNNPDRRVKPET---------QGRFRLLGDV 77 (214)
T ss_dssp EEEEETTCCEEECCEEECCCCCCSCCCCEEEEEEETTCCGGG--CCBSEESCTTSCBCTTT---------TTTEEECSCG
T ss_pred EEEEecCccEEEeeeeecCCcccCCCCceEEEEEecCCCCcc--cceEecCCcccccCccc---------cCceEEeccC
Confidence 3445899999999999754 12378999997653110 00011100 00111 12333322
Q ss_pred ---cceEEEEEeecCCccceeEEEeeccccceeee-eeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeec
Q psy14542 173 ---SGELIIHQVDESDRYRSYQCRGVNKLTGASLL-SVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQG 248 (371)
Q Consensus 173 ---~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~-~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~ 248 (371)
+..|.|.+++.+| +|.|.|.+.+. .+.... ......|.|.... .+|.+... .. +.+|+.++|.|.+.+
T Consensus 78 ~~~~~sL~I~~v~~~D-~G~Y~C~~~~~-~~~~~~~~~~~~~l~V~~~~--~~p~i~~~---~~-~~~G~~v~L~C~~~~ 149 (214)
T 2zg1_A 78 QKKNCSLSIGDARMED-TGSYFFRVERG-RDVKYSYQQNKLNLEVTALI--EKPDIHFL---EP-LESGRPTRLSCSLPG 149 (214)
T ss_dssp GGTBCCEEECSCCGGG-CEEEEEEEEET-TTEEEECCSSCEEEEEECCC--CCCEEC-----CC-CCTTCCEEEEEECTT
T ss_pred CCCeEEEEEccCCHhh-CceEEEEEEcC-CCceeeecCCceEEEEecCC--CCCceecC---cc-ccCCCeEEEEEEecc
Confidence 3479999999999 99999999987 322111 0012256665321 24444331 12 678999999999976
Q ss_pred C----CCCceEEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCCCc--eeEEEEE
Q psy14542 249 N----PLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQD--KMQLFIQ 307 (371)
Q Consensus 249 ~----p~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~--~~~~~l~ 307 (371)
. |.|.+.|++++..+.... ....+.|.|..+..+|+|.|+|.|.|..+.. ..++.|.
T Consensus 150 ~~~~~p~p~v~W~~~~~~~~~~~--~~~~~~L~i~~~~~~~~g~Y~C~a~n~~~~~~~~~~v~l~ 212 (214)
T 2zg1_A 150 SCEAGPPLTFSWTGNALSPLDPE--TTRSSELTLTPRPEDHGTNLTCQMKRQGAQVTTERTVQLN 212 (214)
T ss_dssp CCSCSSCCEEEEESSTTSSSCSS--CCCSSEEEECCCTTCCSCEEEEEEECC----CCEEEEECC
T ss_pred CCCCCCCceEEEeCCCCccCCCC--ceeEEEEEEecccHHcCcEEEEEEEeCCCCcceEEEEEEE
Confidence 4 789999999987643322 1346789999999999999999999987554 4444443
No 230
>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*
Probab=99.80 E-value=6.7e-19 Score=144.08 Aligned_cols=183 Identities=15% Similarity=0.262 Sum_probs=111.6
Q ss_pred ceeeecCCcEEEEEEecCCCCC----ceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeE------eccc
Q psy14542 105 QVVVDVGHRIELHCRVSPKRLS----SAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHM------LSSG 174 (371)
Q Consensus 105 ~~~~~~g~~v~l~C~~~~~~~~----~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~------~~~~ 174 (371)
...+..|++++|.|.+.+.+.+ ..+.|++++...... .+.+.... .....| .++..+ ..+.
T Consensus 12 ~~~v~~G~~v~L~C~~~g~p~~~~~~~~v~W~k~~~~~~~~---~~~~~~~~-~~~~~~-----~~~~~~~~~~~~~~~~ 82 (248)
T 3pv7_A 12 TQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKE---VKVFEFFG-DHQEAF-----RPGAIVSPWRLKSGDA 82 (248)
T ss_dssp EEEEETTSCEEECCEEEESSCCCTTSCEEEEEEECSSCCCE---EEEEEEES-SCEEES-----STTCBCCHHHHTTTBC
T ss_pred CeEEeCCCCEEEeeEEecCCCcCCCceEEEEEEEcCCCCcc---eEEEEecC-Cccccc-----CCceEEEeccCCCCcE
Confidence 3345899999999999776551 259999964321110 00000000 000000 001110 1234
Q ss_pred eEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeec-CCCC-
Q psy14542 175 ELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQG-NPLP- 252 (371)
Q Consensus 175 ~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~- 252 (371)
.|.|.+++.+| +|.|+|.+.+. .+...... .|.|. .+|.+...+.. . +..|+.+.|.|.+.+ .|.+
T Consensus 83 sL~I~~v~~~D-~G~Y~C~~~~~-~~~~~~~~---~L~V~-----~~P~v~~~~~~-~-~~~~~~~~L~C~~~g~~P~pi 150 (248)
T 3pv7_A 83 SLRLPGIQLEE-AGEYRCEVVVT-PLKAQGTV---QLEVV-----ASPASRLLLDQ-V-GMKENEDKYMCESSGFYPEAI 150 (248)
T ss_dssp CEEESSCCGGG-CEEEEEEEEET-TEEEEEEE---EEEEE-----BCCEEEEECC----------CEEEEEEEEEBSSCC
T ss_pred EEEeCCCCHHH-CeEEEEEEEeC-CccceeEE---EEEEe-----cCCceEEecCC-c-cccCCCcEEEEEEccEECCCe
Confidence 69999999999 99999999987 55555555 77777 56666655443 2 556778889999998 7888
Q ss_pred ceEEEeCCcccccCC----------------ceEEecceEEEeccCCCCCeEEEEEEEcCCCCc--eeEEEEEE
Q psy14542 253 TIKWYKQDSPVEESD----------------RIQRIGSSLSISHVEESDSGVWNCVANNSEGQD--KMQLFIQY 308 (371)
Q Consensus 253 ~v~W~~~~~~~~~~~----------------~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~--~~~~~l~v 308 (371)
.+.|++++..+.... ......+.|.|.....+|+|.|+|.|.|..+.. ...+.|.|
T Consensus 151 ~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~n~~~~~~~~~~v~l~V 224 (248)
T 3pv7_A 151 NITWEKQTQKFPHPIEISEDVITGPTIKNMDGTFNVTSCLKLNSSQEDPGTVYQCVVRHASLHTPLRSNFTLTA 224 (248)
T ss_dssp EEEEEEECSSSCSCEEECTTEEEEEEEECTTSCEEEEEEEECC--CCCTTCEEEEEEECTTCSSCEEEEECC--
T ss_pred EEEEEECCccCCCccccccceeecccEECCCCCEEEEEEEEEcCccccCCCEEEEEEECCCCCCCcEEEEEEEE
Confidence 999999997553221 111123468888889999999999999998874 45566666
No 231
>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*
Probab=99.80 E-value=6.2e-18 Score=131.96 Aligned_cols=173 Identities=16% Similarity=0.234 Sum_probs=116.9
Q ss_pred eEEEeCCCc-EEEeccCcEEEEEEecCCCCCC--eeEEEeCC----EEEeeCCeeEEEEccCCcCCCeEEEEEEEcCCCC
Q psy14542 12 SIEMSPSGQ-VVVDVGHRIELHCRVSPKRLSS--AKAWLKDG----LVLRRNSDEVLVLDRVQREDAGMYQCHVSADDDS 84 (371)
Q Consensus 12 ~~~~~p~~~-~~~~~G~~v~l~C~~~~~~~~~--~~~W~~~~----~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 84 (371)
.+.+.|... +.+.+|++++|.|.+ +.|.+ .|+|++.+ +.........|.|.+++.+|+|.|.|.+.+..+.
T Consensus 7 ~~~V~pp~~~v~v~~G~sv~L~C~a--~~p~P~~~i~W~~~~~~l~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~ 84 (210)
T 1gsm_A 7 PLQVEPPEPVVAVALGASRQLTCRL--ACADRGASVQWRGLDTSLGAVQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRT 84 (210)
T ss_dssp SEEEESCCSEEEEETTCCEEEEEEE--CCSSTTCEEEEESSTTTTCCEEEESSEEEEEECSCCGGGCEEEEEEEEETTEE
T ss_pred CEEEeCCCCceEEeCCCCEEEEEEC--CCCCCCcceEEeecccccCcEEecCCccEEEECccCcccCceEEEEEEeCCCc
Confidence 345556653 689999999999965 45555 99999854 2221226788999999999999999999998887
Q ss_pred eEEEEEEEEecceeeEecCCceeeecCCcEEEEEEecCC-CC---CceEEEeeCCEEeeeCCeeEEEE---c-ccCcCCC
Q psy14542 85 AQMSAQVILGGELVEIASSNQVVVDVGHRIELHCRVSPK-RL---SSAKAWLKDGLVLRRNSDEVLVL---D-RVQREDA 156 (371)
Q Consensus 85 ~~~~~~l~v~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~-~~---~~~v~W~~~~~~~~~~~~~~~~~---~-~~~~~~~ 156 (371)
....+.|+|+..|..+...+. ....|+.+ |.|.+.+. |. .++++|+|++..+.........+ . ..+....
T Consensus 85 ~~~~~~ltV~~~P~~~~i~~~-~~~~g~~~-l~C~a~g~~P~~~~~lti~Wlk~~~~L~~~~~~~~~~~~~~~~~~~~~~ 162 (210)
T 1gsm_A 85 FQHTVQLLVYAFPNQLTVSPA-ALVPGDPE-VACTAHKVTPVDPNALSFSLLVGGQELEGAQALGPEVQEEEEEPQGDED 162 (210)
T ss_dssp EEEEEEEEEEBCCSEEEEESS-SBCTTCCE-EEEEEEEEBCCCTTTEEEEEEETTEECTTCEECCCEEEECTTCCSSCCC
T ss_pred eEEEEEEEEEecCCCcEEccc-eEEeCCce-EEEEeCCCCCCCCCCcEEEEEECCEEcccccccccceecccccccCCcc
Confidence 788899999944333333333 44678888 99999875 43 25899999999985432101011 0 0111112
Q ss_pred eeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccc
Q psy14542 157 GMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTG 200 (371)
Q Consensus 157 g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~ 200 (371)
+.| .+ .+.+.+.....+| .+.|+|.|.+...+
T Consensus 163 ~~~---------~v--ts~~~~~~~~~D~-~~~~tC~a~~~L~~ 194 (210)
T 1gsm_A 163 VLF---------RV--TERWRLPPLGTPV-PPALYCQATMRLPG 194 (210)
T ss_dssp CCE---------EE--EEEEECCCCCSSC-CSEEEEEEEEEETT
T ss_pred eEE---------EE--EEEEeecCCcccC-CceEEEEEEeeCCC
Confidence 222 21 2456666666666 89999999998544
No 232
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*
Probab=99.80 E-value=1.6e-18 Score=143.62 Aligned_cols=206 Identities=19% Similarity=0.329 Sum_probs=116.6
Q ss_pred ceEEEeCCCcEEEeccCcEEEEEEecC--CCCCCeeEEEeCCEEE-------e-------------e---------CCee
Q psy14542 11 LSIEMSPSGQVVVDVGHRIELHCRVSP--KRLSSAKAWLKDGLVL-------R-------------R---------NSDE 59 (371)
Q Consensus 11 ~~~~~~p~~~~~~~~G~~v~l~C~~~~--~~~~~~~~W~~~~~~~-------~-------------~---------~~~~ 59 (371)
+.+.+.|.. +.+.+|++++|.|.+.. +.+.+.+.|++++... . . ..+.
T Consensus 6 ~~v~~~~~~-~~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 84 (268)
T 3mj6_A 6 PGLTVSSPQ-LRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDG 84 (268)
T ss_dssp ------CCE-EEEETTCCEEECCBCCCSSCCCEEEEEEEEESSSTTCCEEEEEEETTEEEECGGGTTTEEECSCTTTTBC
T ss_pred cccccCCCc-eEEecCCcEEEEEEeecCCCCceEEEEEEEeCCCCCceEEEEEEcCCCcccCccccCceEEeecCCCCEE
Confidence 456666776 89999999999996542 4566779999953210 0 0 0337
Q ss_pred EEEEccCCcCCCeEEEEEEEcCCCCe--EEEEEEEEecceeeEecCCceeeecCCcEEEEEEe---cCCCCCceEEEeeC
Q psy14542 60 VLVLDRVQREDAGMYQCHVSADDDSA--QMSAQVILGGELVEIASSNQVVVDVGHRIELHCRV---SPKRLSSAKAWLKD 134 (371)
Q Consensus 60 ~l~i~~~~~~d~G~Y~C~~~~~~~~~--~~~~~l~v~~~~~~~~~~~~~~~~~g~~v~l~C~~---~~~~~~~~v~W~~~ 134 (371)
+|.|.+++.+|+|.|+|.+.+..+.. ...+.|.|... ......+.+|+.++|.|.+ .+.+. +.+.|+++
T Consensus 85 ~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~-----~p~~~~v~~G~~v~L~C~~~~~~~~p~-~~v~W~~~ 158 (268)
T 3mj6_A 85 SLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLPE-----EPRDLRVRVGDTTQMRCSIQSTEEKRV-TKVNWMFS 158 (268)
T ss_dssp CEEECSCCGGGCEEEEEEEEETTCCCEEEEEEEEEEECC-----CCSEEEEETTCCEEECCBCEESSSSCC-CEEEEEEE
T ss_pred EEEECCCCHhHCEEEEEEEEecCCcceEEEEEEEEEecc-----CCCccccccCCcEEEEEEecCCCCCCc-cceEEEec
Confidence 89999999999999999999876554 34555555421 1123445899999999999 45565 89999994
Q ss_pred CEEeeeCCeeEEEEcccC----cCCCeeEEEEEeCCceeE-----eccceEEEEEeecCCccceeEEEeeccccceeeee
Q psy14542 135 GLVLRRNSDEVLVLDRVQ----REDAGMYQCHIEDGKYHM-----LSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLS 205 (371)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~----~~~~g~y~~~~~~~~~~~-----~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~ 205 (371)
+...... ...+....-. ....+.| ..+..+ ..+..|.|.+++.+| .|.|+|.+.|. .+.....
T Consensus 159 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-----~~r~~~~~~~~~~~~~L~i~~v~~~D-~G~Y~C~a~n~-~g~~~~~ 230 (268)
T 3mj6_A 159 SGSHTEE-ETVLSYDSNMRSGKFQSLGRF-----RNRVDLTGDISRNDGSIKLQTVKESD-QGIYTCSIYVG-KLESRKT 230 (268)
T ss_dssp CTTCSSC-EEEEEEETTSSSCEEECSSTT-----TTTEEECSCGGGTBCCEEECSCCGGG-CEEEEEEEEET-TEEEEEE
T ss_pred CCCCCcc-eeEEEecCCCCcccccccccc-----ccceEeeccCCCCeEEEEECcCChhh-CeEEEEEEEcC-CceEEEE
Confidence 3211111 0111110000 0000000 001111 234689999999999 99999999997 7776666
Q ss_pred eccceeeeecchhccccceeeeeeeeeeeecCCe
Q psy14542 206 VNRGRLSLTENKRLLSAAKMFEKHRILNVKKDES 239 (371)
Q Consensus 206 ~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~ 239 (371)
. .|.|.. .+|.+...+.... +..|+.
T Consensus 231 ~---~l~V~~----~~p~~~~~p~~~~-~~~~q~ 256 (268)
T 3mj6_A 231 I---VLHVVQ----DEFQRTISPTPPT-DKGQQG 256 (268)
T ss_dssp E---EEEEEC----C-------------------
T ss_pred E---EEEEEc----CCCeeeeCCCCCC-CCccee
Confidence 6 777743 3455555554444 444443
No 233
>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...
Probab=99.80 E-value=9.8e-19 Score=140.57 Aligned_cols=191 Identities=14% Similarity=0.173 Sum_probs=116.2
Q ss_pred ceeeecCCcEEEEEEecCCC-CCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEec-----cceEEE
Q psy14542 105 QVVVDVGHRIELHCRVSPKR-LSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLS-----SGELII 178 (371)
Q Consensus 105 ~~~~~~g~~v~l~C~~~~~~-~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~-----~~~l~i 178 (371)
...+.+|++++|.|.+.+.+ ....+.|++..... .......+.....+....+. ....+++.+.. +..|.|
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~R~~~~~~~~~~~~~L~I 85 (222)
T 1q9r_B 9 GGLVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGK--ALEWLGFIRNKANGYTTEYS-PSVKGRFTISRDNSQSILYLQM 85 (222)
T ss_dssp CCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTS--CCEEEEEECCGGGTTCEEEC-TTTBTTEEEEEETTTTEEEEEE
T ss_pred ceeEcCCCEEEEEEEecCccCCCCcEEEEEECCCC--CcEEEEEEccCCcccccccC-cccCCceEEEEECCCCeEEEEE
Confidence 34558999999999998764 13789999853100 00111111110000000000 00012333322 258999
Q ss_pred EEeecCCccceeEEEeeccccc-----eeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecC-CCC
Q psy14542 179 HQVDESDRYRSYQCRGVNKLTG-----ASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGN-PLP 252 (371)
Q Consensus 179 ~~~~~~d~~g~y~C~~~~~~~~-----~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~ 252 (371)
.+++.+| +|.|.|.+.+. .+ ...... .+.|.... ..+|.+........ +..|+.++|.|.+.|. |.|
T Consensus 86 ~~v~~~D-~G~Y~C~~~~~-~~~~~~~~~~~~~---~l~V~~~~-~~~P~i~~~~~~~~-~~~g~~v~L~C~~~g~~P~p 158 (222)
T 1q9r_B 86 NTLRAED-SATYYCARDHD-GYYERFSYWGQGT---LVTVSAAK-TTPPSVYPLAPGSA-AQTNSMVTLGCLVKGYFPEP 158 (222)
T ss_dssp CSCCGGG-CEEEEEEECCC-SSCCSCCCBCCCE---EEEECSSC-CBCCEEEEECCCSC-CCCSSEEEEEEEEEEEBSSC
T ss_pred CcCCccc-CeEEEEEEecc-CCcccceEeCCce---EEEeccCC-CCCCeEEEcccccc-ccCCCcEEEEEEEccEECCC
Confidence 9999999 99999999986 32 111222 56665321 13455544333333 6689999999999985 888
Q ss_pred -ceEEEeCCcccccCC-------ceEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEE
Q psy14542 253 -TIKWYKQDSPVEESD-------RIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFI 306 (371)
Q Consensus 253 -~v~W~~~~~~~~~~~-------~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 306 (371)
.+.|+++|..+.... ......+.|.|..+..+| |.|+|.|.|..|.......|
T Consensus 159 ~~v~W~~~g~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~y~C~a~n~~~~~~~~~~i 219 (222)
T 1q9r_B 159 VTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDKKI 219 (222)
T ss_dssp CEEEEGGGTBCTTEEEEEEEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEEEEEC
T ss_pred CEEEEecCCeEcceEeccccccCCcEEEEEEEEECchhcCC-CeEEEEEEccCCCCcEEEec
Confidence 999999987654211 011223468999999899 99999999999986655444
No 234
>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...
Probab=99.80 E-value=7.2e-19 Score=140.30 Aligned_cols=178 Identities=13% Similarity=0.186 Sum_probs=113.2
Q ss_pred ceeeecCCcEEEEEEecCCCC--CceEEEeeCC--EEeeeCCeeEEEEccc--CcCCCeeEEEEEeCCceeEe---ccce
Q psy14542 105 QVVVDVGHRIELHCRVSPKRL--SSAKAWLKDG--LVLRRNSDEVLVLDRV--QREDAGMYQCHIEDGKYHML---SSGE 175 (371)
Q Consensus 105 ~~~~~~g~~v~l~C~~~~~~~--~~~v~W~~~~--~~~~~~~~~~~~~~~~--~~~~~g~y~~~~~~~~~~~~---~~~~ 175 (371)
...+.+|+.++|.|.+.+.+. .+.+.|++++ ..+.. +..... ..... +++... .+..
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~-----~~~~~~~~~~~~~---------~r~~~~~~~~~~~ 74 (212)
T 1q0x_L 9 ALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTG-----LIGGTNNRAPGVP---------ARFSGSLIGDKAA 74 (212)
T ss_dssp EEEECTTCCEEEEEEESSSCCCGGGCCEEEEEETTTEEEE-----EEETTTEECTTCC---------TTEEEEEETTEEE
T ss_pred eEeecCCCCEEEEEEecccccCCCCeEEEEEeCCCCCceE-----EEEcCcccCCccc---------ccEEEEeeCCEEE
Confidence 344589999999999988763 3689999853 22110 000000 00011 122222 1247
Q ss_pred EEEEEeecCCccceeEEEeecccccee-eeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecCC-CC-
Q psy14542 176 LIIHQVDESDRYRSYQCRGVNKLTGAS-LLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNP-LP- 252 (371)
Q Consensus 176 l~i~~~~~~d~~g~y~C~~~~~~~~~~-~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p-~~- 252 (371)
|.|.+++.+| +|.|.|.+.+. .+.. .... .+.|..... .+|.+........ +..|+.++|.|.+.+.+ ++
T Consensus 75 L~I~~v~~~D-~G~Y~C~~~~~-~~~~~~~~~---~l~V~~~~~-~~P~v~~~~~~~~-~~~g~~v~L~C~~~g~~p~~~ 147 (212)
T 1q0x_L 75 LTITGAQTED-EAIYFCALWSN-NKLVFGGGT---KLTVLGQPK-SSPTVTLFPPSSE-ELSTAKATLVCTITDFYPGVV 147 (212)
T ss_dssp EEESSCCGGG-CEEEEEEEECS-SCEEECCCE---EEEECCSCC-BCCEEEEECCCHH-HHTTTEEEEEEEEEEEBSSCC
T ss_pred EEECCCCccC-CEEEEEEEecC-chhhcCCCe---EEEEecCCC-CCCeeEEeCCCHH-HccCCcEEEEEEEEEEeCCCe
Confidence 9999999999 99999999987 4321 1222 455532111 3555554443333 45789999999998854 43
Q ss_pred ceEEEeCCcccccCCce---E-------EecceEEEeccCCCCCeEEEEEEEcCCCCceeE
Q psy14542 253 TIKWYKQDSPVEESDRI---Q-------RIGSSLSISHVEESDSGVWNCVANNSEGQDKMQ 303 (371)
Q Consensus 253 ~v~W~~~~~~~~~~~~~---~-------~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~ 303 (371)
.+.|+++|..+..+... . ...+.|.|..+..+|+|.|+|.|.|.......+
T Consensus 148 ~v~W~k~g~~l~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~ 208 (212)
T 1q0x_L 148 TVDWKVDGTPVTAGMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGHSSNKT 208 (212)
T ss_dssp EEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETTEEEEEE
T ss_pred EEEEEECCEeCCCCeecCCceeCCCCCEEEEEEEEEcHHHccCCCcEEEEEEeCCcceeee
Confidence 89999999877654211 1 122368899999999999999999987654433
No 235
>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...
Probab=99.80 E-value=1.1e-18 Score=139.69 Aligned_cols=165 Identities=14% Similarity=0.184 Sum_probs=109.6
Q ss_pred CCCcEEEeccCcEEEEEEecCCC-CCCeeEEEeCC--EEE---e------------------eCCeeEEEEccCCcCCCe
Q psy14542 17 PSGQVVVDVGHRIELHCRVSPKR-LSSAKAWLKDG--LVL---R------------------RNSDEVLVLDRVQREDAG 72 (371)
Q Consensus 17 p~~~~~~~~G~~v~l~C~~~~~~-~~~~~~W~~~~--~~~---~------------------~~~~~~l~i~~~~~~d~G 72 (371)
|.. +.+.+|++++|.|.+..+. +.+.+.|+|++ ..+ . .....+|.|.+++.+|+|
T Consensus 7 p~~-~~v~~G~~v~L~C~v~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G 85 (216)
T 2xzc_L 7 PPS-VSAAPGQKVTISCSGSSSNIGNNYVSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSKSGTSATLGITGLQTGDEA 85 (216)
T ss_dssp CSE-EEECTTCCEEEEEECCTTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGCE
T ss_pred CCc-EEecCCCeEEEEEEeecCCCCCCeEEEEEeCCCCCcEEEEEecCccCCCCCCceEEeccCCEEEEEECCCCcccCE
Confidence 555 7899999999999744444 35789999943 111 0 013458999999999999
Q ss_pred EEEEEEEcCCCC--eEEEEEEEEec--ceeeEecC-CceeeecCCcEEEEEEecCCC-CCceEEEeeCCEEeeeCCeeEE
Q psy14542 73 MYQCHVSADDDS--AQMSAQVILGG--ELVEIASS-NQVVVDVGHRIELHCRVSPKR-LSSAKAWLKDGLVLRRNSDEVL 146 (371)
Q Consensus 73 ~Y~C~~~~~~~~--~~~~~~l~v~~--~~~~~~~~-~~~~~~~g~~v~l~C~~~~~~-~~~~v~W~~~~~~~~~~~~~~~ 146 (371)
.|+|.+.+..+. ......|.|.. .+|.+... +......|+.++|.|.+.+.+ .+..+.|++++..+.....
T Consensus 86 ~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~--- 162 (216)
T 2xzc_L 86 DYYCGTWDSSLNPVFGGGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQ--- 162 (216)
T ss_dssp EEEEEEECTTSCEEEBCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEE---
T ss_pred EEEEEEEeCCCcceECCCEEEEEcCCCCCCceEEeCCChhhccCCcEEEEEEEEeEcCCceEEEEEECCeecCCCee---
Confidence 999999987651 12234555542 33444432 222224688999999998854 3248999999998764310
Q ss_pred EEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeecc
Q psy14542 147 VLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNK 197 (371)
Q Consensus 147 ~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~ 197 (371)
..........|.| .. .+.|.|..+..+| .|.|+|.+.|.
T Consensus 163 ~~~~~~~~~~g~~---------~~--~s~L~i~~~~~~d-~g~Y~C~a~n~ 201 (216)
T 2xzc_L 163 ESVTEQDSKDSTY---------SL--SSTLTLSKADYEK-HKVYACEVTHQ 201 (216)
T ss_dssp EEECCCCTTTCCE---------EE--EEEEEEEHHHHTT-CCEEEEEEECT
T ss_pred EecCcccCCCCCE---------EE--EEEEEECHHHhCC-CCcEEEEEEcC
Confidence 0111112222322 22 2578999999999 99999999987
No 236
>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...
Probab=99.80 E-value=3.4e-19 Score=142.12 Aligned_cols=180 Identities=13% Similarity=0.153 Sum_probs=115.8
Q ss_pred CCceeeecCCcEEEEEEecCCCCCceEEEeeCC--EEeeeCCeeEEEEcccC---cCCCeeEEEEEeCCceeEeccceEE
Q psy14542 103 SNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDG--LVLRRNSDEVLVLDRVQ---REDAGMYQCHIEDGKYHMLSSGELI 177 (371)
Q Consensus 103 ~~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~--~~~~~~~~~~~~~~~~~---~~~~g~y~~~~~~~~~~~~~~~~l~ 177 (371)
.+...+.+|+.++|.|.+. +. +.+.|+++. ..+. +.+.... ....+.|.... ...+..|.
T Consensus 7 ~~~~~v~~G~~v~L~C~~~--~~-~~v~W~k~~~~~~~~------~~~~~~~~~~~~~~~r~~~~~------~~~~~~L~ 71 (211)
T 3tv3_L 7 PPSASGSPGQSITISCTGT--SN-NFVSWYQQHAGKAPK------LVIYDVNKRPSGVPDRFSGSK------SGNTASLT 71 (211)
T ss_dssp CSEEEECTTCEEEEEEECC--CS-SCEEEEEECTTSCCE------EEEBTTTBCCTTSCTTEEEEE------ETTEEEEE
T ss_pred CceEEEcCCCCEEEEEEEC--CC-CeEEEEEECCCCCCE------EEEEEecccCCCCcCcEEEEc------cCCEEEEE
Confidence 3434458999999999998 44 799999842 2111 1111100 00111121111 11235799
Q ss_pred EEEeecCCccceeEEEeeccccc--eeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecC--CCCc
Q psy14542 178 IHQVDESDRYRSYQCRGVNKLTG--ASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGN--PLPT 253 (371)
Q Consensus 178 i~~~~~~d~~g~y~C~~~~~~~~--~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~--p~~~ 253 (371)
|.+++.+| +|.|+|.+.+. .+ ...... .|.|... ...+|.+...+.... +..|+.+.|.|.+.+. |.+.
T Consensus 72 I~~v~~~D-~G~Y~C~~~~~-~~~~~~~~~~---~l~V~~~-~~~~P~v~~~~~~~~-~~~g~~v~l~C~~~g~~p~~~~ 144 (211)
T 3tv3_L 72 VSGLQTDD-EAVYYCGSLVG-NWDVIFGGGT---KLTVLGQ-PKAAPSVTLFPPSSE-ELQANKATLVCLISDFYPGAVT 144 (211)
T ss_dssp EESCCGGG-CEEEEEEEEET-TTEEEECCCE---EEEECCS-CCBCCEEEEECCCHH-HHHTTCEEEEEEEEEEBSSCCE
T ss_pred ECCCChhH-CEEEEEEEecC-CCceeECCCc---eEEEeCC-CCcCCeeEecCCchh-hhcCCCeEEEEEeeeecCCCeE
Confidence 99999999 99999999987 54 222223 5555521 114556655554443 4579999999999885 3578
Q ss_pred eEEEeCCcccccCCc----------eEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEE
Q psy14542 254 IKWYKQDSPVEESDR----------IQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQL 304 (371)
Q Consensus 254 v~W~~~~~~~~~~~~----------~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~ 304 (371)
+.|+++|..+..+.. .....+.|.|..+..+|+|.|+|.|.|..+....++
T Consensus 145 v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~v~~~~~~~~~~~ 205 (211)
T 3tv3_L 145 VAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTV 205 (211)
T ss_dssp EEEEETTEEECTTEEECCCEECTTSSEEEEEEEEECHHHHHHSSCEEEEEEETTEEEEEEE
T ss_pred EEEEECCeecCCCcccCCceECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEECCCCEEeec
Confidence 999999987754211 111224688999999999999999999987665554
No 237
>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A
Probab=99.80 E-value=3.5e-19 Score=141.43 Aligned_cols=169 Identities=11% Similarity=0.173 Sum_probs=111.5
Q ss_pred ceEEEeCCCcEE-EeccCcEEEEEEecCCC--C-CCeeEEEeCCEEEeeC--------------CeeEEEEccCCcCCCe
Q psy14542 11 LSIEMSPSGQVV-VDVGHRIELHCRVSPKR--L-SSAKAWLKDGLVLRRN--------------SDEVLVLDRVQREDAG 72 (371)
Q Consensus 11 ~~~~~~p~~~~~-~~~G~~v~l~C~~~~~~--~-~~~~~W~~~~~~~~~~--------------~~~~l~i~~~~~~d~G 72 (371)
|.+.+.|+.... +.+|++++|.|.+.... | ...+.|+|++..+... ....|.|.+++.+|+|
T Consensus 2 p~v~~~~P~~~~~v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G 81 (207)
T 2vol_A 2 SSVFIFPPKPKDVLTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTKPREEQFNSTFRSVSELPIMHQDWLNGK 81 (207)
T ss_dssp CEEEEECCCHHHHHSTTSCCEEEEEEEEECTTCCCCEEEEEETTEEECCCEEECCCEETTTEEEEEEEEECCHHHHHTTC
T ss_pred CcEEEeCcChhhhhccCCceEEEEEEeCcccCCCceEEEEEECCccccccccCCCcCcCCCcEEEEEEEEEehhHcCCCC
Confidence 556666665334 88999999999765332 3 3589999998776421 1347999999999999
Q ss_pred EEEEEEEcCCCCeE--EEEEE--EEecceeeEecCCcee-eecCCcEEEEEEecCCCC-CceEEEeeCCEEeeeCCeeEE
Q psy14542 73 MYQCHVSADDDSAQ--MSAQV--ILGGELVEIASSNQVV-VDVGHRIELHCRVSPKRL-SSAKAWLKDGLVLRRNSDEVL 146 (371)
Q Consensus 73 ~Y~C~~~~~~~~~~--~~~~l--~v~~~~~~~~~~~~~~-~~~g~~v~l~C~~~~~~~-~~~v~W~~~~~~~~~~~~~~~ 146 (371)
.|+|.+.+..+... ..+.+ .+. .+|.+...+... ...|+.++|.|.+.+.++ +..++|+++|..+.....
T Consensus 82 ~Y~C~a~~~~~~~~~~~~v~~~~~~~-~~P~v~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~--- 157 (207)
T 2vol_A 82 EFKCRVNSAAFPAPIEKTISKTKGRP-KAPQVYTLPPPKEQMAKDKVSLTCMITDFFPEDITVEWESNGQPAENYKN--- 157 (207)
T ss_dssp CEEEEEECTTCSSCEEEEECCCCCCC-BCCEEEEECCCTGGGSSSEEEEEEEEEEEBSSCCEEEEEETTEECSCEEE---
T ss_pred EEEEEEEccCCCCceEEEeccCCCCC-cCCeEEEeCCCHHHhcCCceEEEEEEeeEECCCCEEEEEECCEeccCccc---
Confidence 99999998877542 33333 233 344443322221 135899999999988544 359999999997643211
Q ss_pred EEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeecc
Q psy14542 147 VLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNK 197 (371)
Q Consensus 147 ~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~ 197 (371)
........| .+.+. +.|.|.....+| .|.|+|.+.|.
T Consensus 158 --~~~~~~~~g---------~~~~~--s~l~i~~~~~~~-~g~ytC~a~n~ 194 (207)
T 2vol_A 158 --TQPIMDTDG---------SYFVY--SKLNVQKSNWEA-GNTFTCSVLHE 194 (207)
T ss_dssp --CCCEECTTS---------CEEEE--EEEEEEHHHHSS-CCEEEEEEECT
T ss_pred --CCceECCCC---------CEEEE--EEEEECHHHcCC-CCEEEEEEECC
Confidence 000111222 22222 456777766778 99999999997
No 238
>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*
Probab=99.80 E-value=3.3e-18 Score=138.92 Aligned_cols=171 Identities=20% Similarity=0.304 Sum_probs=116.2
Q ss_pred cceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCC-----EEEe------------------eCCeeEEEEccC
Q psy14542 10 SLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDG-----LVLR------------------RNSDEVLVLDRV 66 (371)
Q Consensus 10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~-----~~~~------------------~~~~~~l~i~~~ 66 (371)
.+.+...|.. +.+.+|++++|.|.+. +.+.+.+.|+|++ ..+. .....+|.|.++
T Consensus 24 ~~~v~~~p~~-~~v~~G~~v~L~C~~~-~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v 101 (237)
T 3sob_L 24 DIQMTQSPSS-LSASVGDRVTITCRAS-QDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSL 101 (237)
T ss_dssp CCCEEEECSE-EEEETTCCEEEEEEES-SCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSC
T ss_pred cceEEeCCCe-EEEeCCCcEEEEEecC-CCCCceEEEEEECCCCCCEEEEEeccccCCCCCCcEEEEcCCCEEEEEECCC
Confidence 4566676776 8999999999999654 4478889999832 1110 114678999999
Q ss_pred CcCCCeEEEEEEEcCCCCe-EEEEEEEEe--cceeeEecCCc-eeeecCCcEEEEEEecCCCC-CceEEEeeCCEEeeeC
Q psy14542 67 QREDAGMYQCHVSADDDSA-QMSAQVILG--GELVEIASSNQ-VVVDVGHRIELHCRVSPKRL-SSAKAWLKDGLVLRRN 141 (371)
Q Consensus 67 ~~~d~G~Y~C~~~~~~~~~-~~~~~l~v~--~~~~~~~~~~~-~~~~~g~~v~l~C~~~~~~~-~~~v~W~~~~~~~~~~ 141 (371)
+.+|+|.|+|.+.+..+.. .....|.|. ..+|.+...+. .....|+.++|.|.+.+.++ .+.++|++++..+...
T Consensus 102 ~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~v~l~C~~~~~~p~~~~v~W~k~g~~~~~~ 181 (237)
T 3sob_L 102 QPEDFATYYCQQSYTTPPTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGN 181 (237)
T ss_dssp CGGGCEEEEEEECSSSSCEECCCEEEEEECCCBCCEEEEECCCHHHHHHTEEEEEEEEEEEBSSCCEEEEEETTEECCSS
T ss_pred ChhhCeEEEEeeccCCceEEcCcEEEEEecCCCCCceEEeCCChhhccCCceEEEEEEcccCCCceEEEEEECCCCCCCc
Confidence 9999999999998765432 223345543 24444443222 22246889999999987433 4899999999887643
Q ss_pred CeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeecc
Q psy14542 142 SDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNK 197 (371)
Q Consensus 142 ~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~ 197 (371)
. +..........|.|. . .+.|.|.....+| .|.|+|.+.|.
T Consensus 182 ~---~~~~~~~~~~~g~~~---------~--~s~L~i~~~~~~d-~g~Y~C~a~n~ 222 (237)
T 3sob_L 182 S---QESVTEQDSKDSTYS---------L--SSTLTLSKADYEK-HKVYACEVTHQ 222 (237)
T ss_dssp E---EEEECCCCTTTCCEE---------E--EEEEEEEHHHHTT-CCEEEEEEECT
T ss_pred e---eecccccccCCCcEE---------E--EEEEEEcHHHccC-CCcEEEEEeeC
Confidence 1 011122222333332 2 2578999999999 99999999998
No 239
>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*
Probab=99.80 E-value=1.8e-18 Score=138.12 Aligned_cols=177 Identities=12% Similarity=0.208 Sum_probs=114.4
Q ss_pred eeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcc--cCcCCCeeEEEEEeCCceeEe---ccceEEEEE
Q psy14542 106 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDR--VQREDAGMYQCHIEDGKYHML---SSGELIIHQ 180 (371)
Q Consensus 106 ~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~--~~~~~~g~y~~~~~~~~~~~~---~~~~l~i~~ 180 (371)
..+.+|+.++|.|.+.+.+. +.+.|++.... .....+.... ...... +++... .+..|.|.+
T Consensus 11 ~~v~~G~~v~L~C~~~~~~~-~~v~W~k~~~~---~~~~~~~~~~~~~~~~~~---------~r~~~~~~~~~~~L~I~~ 77 (213)
T 3r06_A 11 LPASLGDRVTINCQASQDIS-NYLNWYQQKPG---KAPKLLIYYTNKLADGVP---------SRFSGSGSGRDSSFTISS 77 (213)
T ss_dssp EEECTTCCEEEEEEESSCCT-TCEEEEEECTT---SCCEEEEETTTEECTTCC---------TTEEEEEETTEEEEEESS
T ss_pred EEecCCCcEEEEEEeCCCcC-ceEEEEEECCC---CCcEEEEEEcCcCCCCCC---------CcEEEeccCCEEEEEECC
Confidence 44589999999999998865 89999984310 0000011100 000111 222222 235799999
Q ss_pred eecCCccceeEEEeeccccc-eeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecCCC--CceEEE
Q psy14542 181 VDESDRYRSYQCRGVNKLTG-ASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPL--PTIKWY 257 (371)
Q Consensus 181 ~~~~d~~g~y~C~~~~~~~~-~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~--~~v~W~ 257 (371)
++.+| +|.|+|.+.+. .+ ...... .+.|.. ...+|.+...+.... +..|+.+.|.|.+.+.++ +.+.|+
T Consensus 78 v~~~D-~G~Y~C~~~~~-~~~~~~~~~---~l~V~~--~~~~p~v~~~~~~~~-~~~~~~v~l~C~~~g~~p~~~~v~W~ 149 (213)
T 3r06_A 78 LESED-IGSYYCQQYYN-YPWTFGPGT---KLEIKR--ADAKPTVSIFPPSSE-QLGTGSATLVCFVNNFYPKDINVKWK 149 (213)
T ss_dssp CCGGG-CSEEEEEECSS-SSCEECCCE---EEEECC--CCBCCEEEEECCCHH-HHTTTEEEEEEEEEEEBSSCEEEEEE
T ss_pred CCccc-CEEEEEecccC-CceEEcCCc---eEEEec--cCCCceeeeeCCCce-ecCCCCcEEEEEEeeecCCceEEEEE
Confidence 99999 99999999886 32 222223 555521 125666666555444 567888999999988654 489999
Q ss_pred eCCcccccCC-c---e-------EEecceEEEeccCCCCCeEEEEEEEcCCCCceeE
Q psy14542 258 KQDSPVEESD-R---I-------QRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQ 303 (371)
Q Consensus 258 ~~~~~~~~~~-~---~-------~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~ 303 (371)
++|..+..+. . . ....+.|.|.....+|+|.|+|.|.|........
T Consensus 150 k~g~~l~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~YtC~v~n~~~~~~~~ 206 (213)
T 3r06_A 150 VDGSEKRDGVLQSVTDQDSKDSTYSLSSTLSLTKADYERHNLYTCEVTHKTSTAAIV 206 (213)
T ss_dssp ETTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCSSCEE
T ss_pred ECCcccCCceEeccCceeCCCCcEEEEEEEEeCHHHhccCCeEEEEEEecccCcceE
Confidence 9998776531 0 0 1112368888888899999999999987654433
No 240
>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}
Probab=99.80 E-value=1.6e-18 Score=142.39 Aligned_cols=173 Identities=19% Similarity=0.253 Sum_probs=114.6
Q ss_pred ccceEEEeCCCcEEEeccCcEEEEEEecCCCC----CCeeEEEeCC--EEE----------e-----------eCCeeEE
Q psy14542 9 SSLSIEMSPSGQVVVDVGHRIELHCRVSPKRL----SSAKAWLKDG--LVL----------R-----------RNSDEVL 61 (371)
Q Consensus 9 ~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~----~~~~~W~~~~--~~~----------~-----------~~~~~~l 61 (371)
.++.+...|.. +.+.+|++++|.|.+....+ .+.+.|+|++ ..+ . .....+|
T Consensus 37 ~~~~~~~~p~~-~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L 115 (254)
T 2c1o_A 37 RELVMTQSPLT-LSVTIGQPASISCKSSQSLLYSNGKTYLNWLLQRPGQSPKRLIYLVSKLDSGDPDRFTGSGSGTDFTL 115 (254)
T ss_dssp -CCCEEEECSE-EEECTTSCEEEEEEESSCCBCSSSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEE
T ss_pred eceeEEeCCce-EEecCCCcEEEEeeccCcccccCCCCceEEEEeCCCCCceEEEEeccccCCCccceEEEecCCCEEEE
Confidence 35667777777 89999999999996544332 4789999832 211 0 0134589
Q ss_pred EEccCCcCCCeEEEEEEEcCCCCeE-EEEEEEEec--ceeeEecCC-ceeeecCCcEEEEEEecCCCC-CceEEEeeCCE
Q psy14542 62 VLDRVQREDAGMYQCHVSADDDSAQ-MSAQVILGG--ELVEIASSN-QVVVDVGHRIELHCRVSPKRL-SSAKAWLKDGL 136 (371)
Q Consensus 62 ~i~~~~~~d~G~Y~C~~~~~~~~~~-~~~~l~v~~--~~~~~~~~~-~~~~~~g~~v~l~C~~~~~~~-~~~v~W~~~~~ 136 (371)
.|.+++.+|+|.|+|.+.+..+... ....|.|.. .+|.+...+ ......|+.++|.|.+.+.++ ++.++|++++.
T Consensus 116 ~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~ 195 (254)
T 2c1o_A 116 KISRVEAEDLGIYYCVQGSHFPPTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGS 195 (254)
T ss_dssp EESSCCGGGCSEEEEEECSSSSCEEBCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEESSS
T ss_pred EECcCCcccCEEEEEEEEcCcceEecCCEEEEECCCCCCCeeEeecCChhhccCCcEEEEEEEecccCCCcEEEEEECCC
Confidence 9999999999999999998754322 223455542 244444322 222246889999999987443 35799999998
Q ss_pred EeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeecc
Q psy14542 137 VLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNK 197 (371)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~ 197 (371)
.+...... .........|.| .. .+.|.|.++..+| .|.|+|.|.|.
T Consensus 196 ~l~~~~~~---~~~~~~~~~g~~---------~~--~~~L~i~~~~~~d-~G~Y~C~a~n~ 241 (254)
T 2c1o_A 196 ERQNGVLN---SWTDQDSKDSTY---------SM--SSTLTLTKDEYER-HNSYTCEATHK 241 (254)
T ss_dssp EECTTEEE---EECCCCTTTCCE---------EE--EEEEEEEHHHHHT-CCEEEEEEECT
T ss_pred cccCccee---ccccccCCCCcE---------EE--EEEEEeccccccC-CCeEEEEEEcC
Confidence 87654110 111111122222 21 2689999999999 99999999997
No 241
>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1
Probab=99.80 E-value=7e-18 Score=137.94 Aligned_cols=191 Identities=16% Similarity=0.224 Sum_probs=118.0
Q ss_pred CceeeecCCcEEEEEEecCCCC-CceEEEeeCCEEeeeCCeeEEEEcc------cCcCCCeeEEEEEeCCceeEec----
Q psy14542 104 NQVVVDVGHRIELHCRVSPKRL-SSAKAWLKDGLVLRRNSDEVLVLDR------VQREDAGMYQCHIEDGKYHMLS---- 172 (371)
Q Consensus 104 ~~~~~~~g~~v~l~C~~~~~~~-~~~v~W~~~~~~~~~~~~~~~~~~~------~~~~~~g~y~~~~~~~~~~~~~---- 172 (371)
+...+.+|++++|.|.+.+.+. .+.+.|+++.... .....+.... ......+ ++.+..
T Consensus 10 ~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~~~--~~~~~~~~~~~~~~~~~~~~~~~---------r~~~~~~~~~ 78 (247)
T 2ghw_B 10 GGGVVQPGKSLRLSCAASGFAFSSYAMHWVRQAPGK--GLEWVAVISYDGSNKYYADSVKG---------RFTISRDNSK 78 (247)
T ss_dssp CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTS--CEEEEEEECTTSSCEEECTTTTT---------TEEEEEETTT
T ss_pred CCEEEecCCcEEEEEEeccccCCCceEEEEEeCCCC--ceEEEEEEecCCCceeeCccccC---------cEEEEEeCCC
Confidence 4455689999999999988762 3789999843100 0000111110 0001112 333222
Q ss_pred -cceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchh----------ccccceeeeeeeeeeeecCCeEE
Q psy14542 173 -SGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKR----------LLSAAKMFEKHRILNVKKDESVI 241 (371)
Q Consensus 173 -~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~----------~~~p~~~~~~~~~~~~~~g~~~~ 241 (371)
...|.|.+++.+| +|.|+|.+.+. .+...... ...|.|..... ..++.+...+.... +.+|+.++
T Consensus 79 ~~~~L~I~~v~~~D-~G~Y~C~~~n~-~~~~~~~~-~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~G~~v~ 154 (247)
T 2ghw_B 79 NTLYLQMNSLRAED-TAVYYCARDRS-YYLDYWGQ-GTLVTVSSGGGGSGGGGSGGGGSETTLTQSPATLS-LSPGERAT 154 (247)
T ss_dssp TEEEEEECSCCGGG-CEEEEEEEEET-TEEEEECC-CEEEEECSCC------------CCCCEEEECSEEE-ECTTSCEE
T ss_pred CEEEEEECcCCHHH-CEEEEEeeecc-CCccccCC-ceEEEEecccccccccccCCCCcceEEEccCCEEE-ecCCCcEE
Confidence 2479999999999 99999999886 22211111 12566653210 12344444444555 89999999
Q ss_pred EEEEeecCCCCceEEEe--CCcccc------------cCCceEE----ecceEEEeccCCCCCeEEEEEEEcCCCCc-ee
Q psy14542 242 LPCSAQGNPLPTIKWYK--QDSPVE------------ESDRIQR----IGSSLSISHVEESDSGVWNCVANNSEGQD-KM 302 (371)
Q Consensus 242 l~C~~~~~p~~~v~W~~--~~~~~~------------~~~~~~~----~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~-~~ 302 (371)
|.|.+.+.|.+.+.|++ ++..+. ...++.. ...+|.|.++..+|+|.|+|.|.|..+.. ..
T Consensus 155 L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~~~~~~g~ 234 (247)
T 2ghw_B 155 LSCRASQSVRSNLAWYQQKPGQAPRPLIYDASTRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQRSNWPPTFGQ 234 (247)
T ss_dssp EEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEECSSSEEEEEECSCCGGGCEEEEEEECSSSSCEECC
T ss_pred EEEEeCCCccceEEEEEECCCCCcEEEEEEeccCCCccCCCEEEecCCCeEEEEECcCCHHHCEEEEEEEccCCCceEcC
Confidence 99999999989999999 555431 1234432 12469999999999999999999865432 22
Q ss_pred EEEEEEe
Q psy14542 303 QLFIQYA 309 (371)
Q Consensus 303 ~~~l~v~ 309 (371)
...|.|.
T Consensus 235 ~t~l~V~ 241 (247)
T 2ghw_B 235 GTKVEVK 241 (247)
T ss_dssp CEEEEEC
T ss_pred CEEEEEC
Confidence 3455554
No 242
>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*
Probab=99.80 E-value=1.9e-18 Score=140.35 Aligned_cols=183 Identities=14% Similarity=0.239 Sum_probs=116.8
Q ss_pred eeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcc--cCcCCCeeEEEEEeCCceeEeccceEEEEEeec
Q psy14542 106 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDR--VQREDAGMYQCHIEDGKYHMLSSGELIIHQVDE 183 (371)
Q Consensus 106 ~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~--~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~ 183 (371)
..+.+|++++|.|.+.+.+. +.+.|++.... .....+.... ......+.|.... ...+..|.|.+++.
T Consensus 34 ~~v~~G~~v~L~C~~~~~~~-~~v~W~k~~~~---~~~~~~~~~~~~~~~~~~~r~~~~~------~~~~~~L~I~~v~~ 103 (237)
T 3sob_L 34 LSASVGDRVTITCRASQDVS-TAVAWYQQKPG---KAPKLLIYSASFLYSGVPSRFSGSG------SGTDFTLTISSLQP 103 (237)
T ss_dssp EEEETTCCEEEEEEESSCCT-TCEEEEEECTT---SCCEEEEETTTEECTTCCTTEEEEE------ETTEEEEEESSCCG
T ss_pred EEEeCCCcEEEEEecCCCCC-ceEEEEEECCC---CCCEEEEEeccccCCCCCCcEEEEc------CCCEEEEEECCCCh
Confidence 44589999999999988765 89999984310 0000011100 0011112222111 01335799999999
Q ss_pred CCccceeEEEeeccccc-eeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeec-CC-CCceEEEeCC
Q psy14542 184 SDRYRSYQCRGVNKLTG-ASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQG-NP-LPTIKWYKQD 260 (371)
Q Consensus 184 ~d~~g~y~C~~~~~~~~-~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~-~p-~~~v~W~~~~ 260 (371)
+| +|.|+|.+.+. .+ ...... .+.|.. ...+|.+........ +..|+.+.|.|.+.+ .| .+.+.|+++|
T Consensus 104 ~D-~G~Y~C~~~~~-~~~~~~~~~---~l~V~~--~~~~p~v~~~~~~~~-~~~g~~v~l~C~~~~~~p~~~~v~W~k~g 175 (237)
T 3sob_L 104 ED-FATYYCQQSYT-TPPTFGQGT---KVEIKR--TVAAPSVFIFPPSDE-QLKSGTASVVCLLNNFYPREAKVQWKVDN 175 (237)
T ss_dssp GG-CEEEEEEECSS-SSCEECCCE---EEEEEC--CCBCCEEEEECCCHH-HHHHTEEEEEEEEEEEBSSCCEEEEEETT
T ss_pred hh-CeEEEEeeccC-CceEEcCcE---EEEEec--CCCCCceEEeCCChh-hccCCceEEEEEEcccCCCceEEEEEECC
Confidence 99 99999999876 33 122222 555543 225666655444433 556889999999987 45 5899999999
Q ss_pred cccccCC-----------ceEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEE
Q psy14542 261 SPVEESD-----------RIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFI 306 (371)
Q Consensus 261 ~~~~~~~-----------~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 306 (371)
..+..+. ......+.|.|.....+|+|.|+|+|.|.......+..+
T Consensus 176 ~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~ 232 (237)
T 3sob_L 176 ALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSF 232 (237)
T ss_dssp EECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSSCEEEEE
T ss_pred CCCCCceeecccccccCCCcEEEEEEEEEcHHHccCCCcEEEEEeeCCCCCceeeee
Confidence 8876431 111123468899999999999999999998765544443
No 243
>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}
Probab=99.79 E-value=1.2e-19 Score=145.38 Aligned_cols=171 Identities=12% Similarity=0.185 Sum_probs=112.7
Q ss_pred cccceEEEeCCCcEE--EeccCcEEEEEEecCCC--C-CCeeEEEeCCEEEeeC--------------CeeEEEEccCCc
Q psy14542 8 KSSLSIEMSPSGQVV--VDVGHRIELHCRVSPKR--L-SSAKAWLKDGLVLRRN--------------SDEVLVLDRVQR 68 (371)
Q Consensus 8 ~~~~~~~~~p~~~~~--~~~G~~v~l~C~~~~~~--~-~~~~~W~~~~~~~~~~--------------~~~~l~i~~~~~ 68 (371)
..+|.+.+.|+. .. +.+|++++|.|.+.... | .+.+.|+|++..+... ....|.|.+++.
T Consensus 7 ~~~p~v~~~pp~-~~~~v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~ 85 (218)
T 2rgs_A 7 EGGPSVFIFPPN-IKDVLMISLTPKVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTIRVVSTLPIQHQDW 85 (218)
T ss_dssp --CCEEEEECCC-HHHHHCTTSCCEEEEEEEEECTTSCCEEEEEEETTEEECCCEEEEEEETTTTEEEEEEEEECCHHHH
T ss_pred CCCCEEEEECcC-HHHhhccCCCeeEEEEEcCCccCCCceEEEEEECCccccCcccccccccCCCeEEEEEEEEEcHHHc
Confidence 346778888877 44 78999999999766432 3 4789999999776432 234799999999
Q ss_pred CCCeEEEEEEEcCCCCe--EEEEEE--EEecceeeEecCCceee-ecCCcEEEEEEecCC-CCCceEEEeeCCEEeeeCC
Q psy14542 69 EDAGMYQCHVSADDDSA--QMSAQV--ILGGELVEIASSNQVVV-DVGHRIELHCRVSPK-RLSSAKAWLKDGLVLRRNS 142 (371)
Q Consensus 69 ~d~G~Y~C~~~~~~~~~--~~~~~l--~v~~~~~~~~~~~~~~~-~~g~~v~l~C~~~~~-~~~~~v~W~~~~~~~~~~~ 142 (371)
+|+|.|+|.+.+..+.. ...+.+ .+. .+|.+...+.... ..|+.++|.|.+.+. |.+..++|+++|..+....
T Consensus 86 ~D~g~Y~C~~~~~~~~~~~~~~v~~~~~~~-~~P~v~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~ 164 (218)
T 2rgs_A 86 MSGKEFKCKVNNKDLPSPIERTISKIKGLV-RAPQVYILPPPAEQLSRKDVSLTCLVVGFNPGDISVEWTSNGHTEENYK 164 (218)
T ss_dssp HTTCCEEEEEEETTCSSCEEEEECCCCCCC-BCCEEEEECCCGGGTTSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEE
T ss_pred CCCCeEEEEEECCcCCCcceEEEeecCCCC-CCCEEEEECCChHHhcCCceEEEEEEEeeeCCCcEEEEEECCEeccCce
Confidence 99999999999876654 233222 223 3444433222211 359999999999984 5435999999998764321
Q ss_pred eeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeecc
Q psy14542 143 DEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNK 197 (371)
Q Consensus 143 ~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~ 197 (371)
. ........| .+.+. +.|.|.....+| .|.|+|.+.|.
T Consensus 165 ~-----~~~~~~~~g---------t~~~~--s~l~v~~~~~~d-~g~YtC~a~n~ 202 (218)
T 2rgs_A 165 D-----TAPVLDSDG---------SYFIY--SKLNMKTSKWEK-TDSFSCNVRHE 202 (218)
T ss_dssp E-----CCCEECTTS---------CEEEE--EEEEEEHHHHHH-CSCEEEEEECT
T ss_pred e-----cccEECCCC---------CEEEE--EEEEECHHHcCC-CCeEEEEEEcC
Confidence 1 000011222 22222 456676666667 89999999997
No 244
>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1
Probab=99.79 E-value=1.6e-18 Score=142.56 Aligned_cols=199 Identities=13% Similarity=0.118 Sum_probs=119.1
Q ss_pred CceeeecCCcEEEEEEecCCC-CCceEEEeeCC--EEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEec-----cce
Q psy14542 104 NQVVVDVGHRIELHCRVSPKR-LSSAKAWLKDG--LVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLS-----SGE 175 (371)
Q Consensus 104 ~~~~~~~g~~v~l~C~~~~~~-~~~~v~W~~~~--~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~-----~~~ 175 (371)
+...+.+|++++|.|.+.+.+ ..+.+.|++++ ..+. ..+..... ....|. ....+++.+.. ...
T Consensus 8 ~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~----~~~~~~~~---~~~~~~-~~~~~R~~~~~~~~~~~~~ 79 (257)
T 1f3r_B 8 GPGLVRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPE----WMGRMWYD---GYTAYN-SALKSRLSISRDTSKNQVF 79 (257)
T ss_dssp CCSEECTTSEEEEEEEEESSCTTTSCCEEEEEETTSCCE----EEEEECSS---SCEEEC-SSSSTTEEEEEETTTTEEE
T ss_pred CCccccCCceEEEEEEEecccCCCccEEEEEeCCCCCcE----EEEEEecC---CceeeC-cccCCcEEEEEECCCCEEE
Confidence 344568999999999998874 23789999852 1110 01111100 000000 00012333322 258
Q ss_pred EEEEEeecCCccceeEEEeeccccc------eeeeeeccceeeeecchh----------ccccceeeeeeeeeeeecCCe
Q psy14542 176 LIIHQVDESDRYRSYQCRGVNKLTG------ASLLSVNRGRLSLTENKR----------LLSAAKMFEKHRILNVKKDES 239 (371)
Q Consensus 176 l~i~~~~~~d~~g~y~C~~~~~~~~------~~~~~~~~~~l~v~~~~~----------~~~p~~~~~~~~~~~~~~g~~ 239 (371)
|.|.+++.+| +|.|.|.+.+. .| ..........|.|..... ..++.+...+.... +.+|++
T Consensus 80 L~I~~v~~~D-sG~Y~C~a~n~-~g~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-v~~G~~ 156 (257)
T 1f3r_B 80 LKMNSLQTDD-TGTYYCTRDLY-GGYPLGFWYFDFWGPGTMVTVSSGGGGSGGGGSGGGGSDIKLTQSPSLLS-ASVGDR 156 (257)
T ss_dssp EEEESCCTTC-CEEEEEEEESS-SSCCSSCCCEEEECCCEEEEECSSCCSSCCSSSCCCCCEECSCEETSEEC-CCTTCC
T ss_pred EEECCCCccc-CEEEEEEEccc-ccCccccccccccCCceEEEEEeCCccccccccCCCccceEEEccCCEEE-EcCCCC
Confidence 9999999999 99999999987 32 111100112566663210 01223333344445 889999
Q ss_pred EEEEEEeecCCCCceEEEe--CCcccc------------cCCceEE----ecceEEEeccCCCCCeEEEEEEEcCCCCce
Q psy14542 240 VILPCSAQGNPLPTIKWYK--QDSPVE------------ESDRIQR----IGSSLSISHVEESDSGVWNCVANNSEGQDK 301 (371)
Q Consensus 240 ~~l~C~~~~~p~~~v~W~~--~~~~~~------------~~~~~~~----~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~ 301 (371)
++|.|.+.+.+.+.+.|++ ++..+. ...++.. ...+|.|.++..+|+|.|+|.|.|......
T Consensus 157 v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~g 236 (257)
T 1f3r_B 157 VTLSCKGSQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDVATYFCYQYNNGYTFG 236 (257)
T ss_dssp EEEEEECSSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGCSEEEEEEESSSEEEC
T ss_pred EEEEEEECCcCCCcEEEEEECCCCCcEEEEEEccCCCCCcCCCEEEecCCCEEEEEECCCChhhCEEEEEEEeCCCCeEC
Confidence 9999999998888999999 555431 1234432 123799999999999999999999751122
Q ss_pred eEEEEEEecCcc
Q psy14542 302 MQLFIQYAHGKY 313 (371)
Q Consensus 302 ~~~~l~v~~~p~ 313 (371)
....|.|...+.
T Consensus 237 ~gt~l~V~~~~~ 248 (257)
T 1f3r_B 237 AGTKLELKAAEQ 248 (257)
T ss_dssp CCCEECCSSSCC
T ss_pred CCEEEEEeCCCc
Confidence 234555655444
No 245
>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D
Probab=99.79 E-value=7.4e-18 Score=138.53 Aligned_cols=200 Identities=15% Similarity=0.192 Sum_probs=119.7
Q ss_pred cCCceeeecCCcEEEEEEecCCCC-CceEEEeeCC--EEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEec-----c
Q psy14542 102 SSNQVVVDVGHRIELHCRVSPKRL-SSAKAWLKDG--LVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLS-----S 173 (371)
Q Consensus 102 ~~~~~~~~~g~~v~l~C~~~~~~~-~~~v~W~~~~--~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~-----~ 173 (371)
..+...+.+|++++|.|.+.+.+. .+.+.|++.. ..+ ...+..... ..... ......+++.+.. .
T Consensus 8 ~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~----~~~~~~~~~--~~~~~-~~~~~~~r~~~~~~~~~~~ 80 (256)
T 3umt_A 8 QSGLELVKPGASVKISCKTSGYTFTEYTMHWVKQSHGKSL----EWIGGINPN--NGGTS-YNQKFKGKAILTVDKSSST 80 (256)
T ss_dssp ECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCE----EEEEEECTT--TCCEE-ECGGGTTTEEEEEEGGGTE
T ss_pred ccCceEEcCCCCEEEEEEEecccccccEEEEEEECCCCCc----EEEEEEecc--CCccc-ccccccceEEEEEecCCCE
Confidence 334455689999999999987651 2789999732 111 111111100 00000 0000012333332 2
Q ss_pred ceEEEEEeecCCccceeEEEeeccc---cceeeeeeccceeeeecch-----------hccccceeeeeeeeeeeecCCe
Q psy14542 174 GELIIHQVDESDRYRSYQCRGVNKL---TGASLLSVNRGRLSLTENK-----------RLLSAAKMFEKHRILNVKKDES 239 (371)
Q Consensus 174 ~~l~i~~~~~~d~~g~y~C~~~~~~---~~~~~~~~~~~~l~v~~~~-----------~~~~p~~~~~~~~~~~~~~g~~ 239 (371)
..|.|.+++.+| +|.|.|.+.+.. .+...... .|.|.... ...+|.+...+.... +.+|++
T Consensus 81 ~~L~I~~v~~~D-sG~Y~C~~~~~~~~~~~~~~~~~---~L~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-v~~G~~ 155 (256)
T 3umt_A 81 AYLELRSLTSED-SAVYYCARDDRYPAWFAYWGQGT---TVTVSSGGGGSGGGGSGGGGSTDIQLTQSPSSLS-ASLGER 155 (256)
T ss_dssp EEEEECSCCGGG-CEEEEEEECCSTTCCSCEECCCE---EEEECC---------------CCCCEEEECSEEE-ECTTCC
T ss_pred EEEEECCCCccc-CEEEEEEEccCCCccccEECCCE---EEEEcCCCccccCcccCCCCccccEEEcCCCeEE-EECCCC
Confidence 359999999999 999999998761 11222223 56666320 001455555565566 999999
Q ss_pred EEEEEEeecCCCCceEEEeCC--cccc------------cCCceEEe----cceEEEeccCCCCCeEEEEEEEcCCCCc-
Q psy14542 240 VILPCSAQGNPLPTIKWYKQD--SPVE------------ESDRIQRI----GSSLSISHVEESDSGVWNCVANNSEGQD- 300 (371)
Q Consensus 240 ~~l~C~~~~~p~~~v~W~~~~--~~~~------------~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~a~n~~g~~- 300 (371)
++|.|.+.+.+.+.+.|+++. ..+. ...++... ..+|.|.++..+|+|.|.|.|.|..+..
T Consensus 156 v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~f 235 (256)
T 3umt_A 156 VSITCRASQDIGSNLNWLQQKPDGTIKRLIYATSSLDSGVPKRFSGSRSGSDYSLTISSLESEDFVDYYCLQYASSPPTF 235 (256)
T ss_dssp EEEEEEESSCCTTCEEEEEECTTCCEEEEEETTTEECTTSCTTEEEEEETTEEEEEECSCCGGGCSEEEEEECSSSSCEE
T ss_pred EEEEEEEecCCCcEEEEEEECCCCCcEEEEEeccccCCccCCCEEEecCCCEEEEEECCCChhHCEEEEEEEeeCCCcEE
Confidence 999999999888899999852 2211 12333321 2359999999999999999999865443
Q ss_pred eeEEEEEEecCcc
Q psy14542 301 KMQLFIQYAHGKY 313 (371)
Q Consensus 301 ~~~~~l~v~~~p~ 313 (371)
.....|.|..++.
T Consensus 236 g~gt~L~V~~~~~ 248 (256)
T 3umt_A 236 GGGTKLEIKRAAA 248 (256)
T ss_dssp CCCEEEEEC----
T ss_pred CCCEEEEEECCCc
Confidence 3346677776655
No 246
>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*
Probab=99.79 E-value=1.3e-18 Score=137.61 Aligned_cols=176 Identities=13% Similarity=0.170 Sum_probs=112.4
Q ss_pred eeecCCcEEEEEEecCCC---CCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeE--eccceEEEEEe
Q psy14542 107 VVDVGHRIELHCRVSPKR---LSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHM--LSSGELIIHQV 181 (371)
Q Consensus 107 ~~~~g~~v~l~C~~~~~~---~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~--~~~~~l~i~~~ 181 (371)
.+.+|++++|.|.+.... +.+.+.|++++..+.......... ...| .++..+ ..+..|.|.++
T Consensus 5 ~v~~G~~v~L~C~~~~~~~~~~~~~~~W~~~~~~i~~~~~~~~~~-------~~~~-----~~r~~~~~~~~~~L~I~~v 72 (201)
T 1dr9_A 5 TKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNI-------WPEY-----KNRTIFDITNNLSIVILAL 72 (201)
T ss_dssp EEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEE-------CHHH-----HTTEEEESTTTTEEEECSC
T ss_pred EEEeCCCEEEecccCCCcccccccEEEEEeCCcEEEEEeCCceee-------cCcc-----cceeEEccCCCcEEEEecc
Confidence 347899999999986432 227899999987653211000000 0000 011111 12368999999
Q ss_pred ecCCccceeEEEeeccccceee-----eeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEee-cCCCCceE
Q psy14542 182 DESDRYRSYQCRGVNKLTGASL-----LSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQ-GNPLPTIK 255 (371)
Q Consensus 182 ~~~d~~g~y~C~~~~~~~~~~~-----~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~-~~p~~~v~ 255 (371)
+.+| +|.|+|.+.+. .+... ... .|.|.... ..|.+... . ...|+.+.|.|.+. |.|.|.+.
T Consensus 73 ~~~D-~G~Y~C~~~~~-~g~~~~~~~~~~~---~l~V~~~~--~~p~~~~~----~-~~~g~~~~l~C~~~~g~P~p~i~ 140 (201)
T 1dr9_A 73 RPSD-EGTYECVVLKY-EKDAFKREHLAEV---TLSVKADF--PTPSISDF----E-IPTSNIRRIICSTSGGFPEPHLS 140 (201)
T ss_dssp CGGG-CEEEEEEEEEC-CTTSCEEEEEEEE---EEEEECCC--CCCEEEEE----E-CSSTTEEEEEEEEEEESSCEEEE
T ss_pred cchh-CeEEEEEEEcC-CCCccccccccEE---EEEEcCCC--CCCceEec----c-CCCCCeEEEEEecCCccCCCEEE
Confidence 9999 99999999997 43322 233 55555321 12333221 1 35588999999995 89999999
Q ss_pred EEeCCcccccCCceE-Ee-c-ceE---EEeccCCCCCeEEEEEEEcCCCCceeEEEE
Q psy14542 256 WYKQDSPVEESDRIQ-RI-G-SSL---SISHVEESDSGVWNCVANNSEGQDKMQLFI 306 (371)
Q Consensus 256 W~~~~~~~~~~~~~~-~~-~-~~l---~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 306 (371)
|+++|..+....... .. + +.+ .+..+..+|.|.|+|.|.|..|..+..+.+
T Consensus 141 W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~d~g~Y~C~a~n~~~~~s~~~~~ 197 (201)
T 1dr9_A 141 WLENGEELNAINTTVSQDPETELYAVSSKLDFNMTTNHSFMCLIKYGHLRVNQTFNW 197 (201)
T ss_dssp EEESSCEECCSEEEEEECTTTCCEEEEEEEEEETTSCEEEEEEEEETTCCEEEEEEE
T ss_pred EEECCEECccccceEEecCCCcEEEEEEEEEEEecCCCEEEEEEecCcceeeeEEec
Confidence 999998877543222 21 2 222 223456789999999999999998877665
No 247
>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H
Probab=99.79 E-value=1.6e-18 Score=138.96 Aligned_cols=189 Identities=16% Similarity=0.264 Sum_probs=115.1
Q ss_pred CCceeeecCCcEEEEEEecCCC-CCceEEEeeC--CEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEec-----cc
Q psy14542 103 SNQVVVDVGHRIELHCRVSPKR-LSSAKAWLKD--GLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLS-----SG 174 (371)
Q Consensus 103 ~~~~~~~~g~~v~l~C~~~~~~-~~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~-----~~ 174 (371)
++...+.+|++++|.|.+.+.+ ..+.+.|+++ +..+.. ...+... .....+ .....+++.+.. +.
T Consensus 7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~----~~~~~~~--~~~~~~-~~~~~~R~~~~~~~~~~~~ 79 (219)
T 1c1e_H 7 SGPELKKPGETVKISCKASGYMFTNYGMNWVKQAPGKALKL----MGWINPY--TGESTF-ADDFKGRFAFFLETSATTA 79 (219)
T ss_dssp CCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEE----EEEECSS--SCCEEE-CGGGCSSEEEEEEGGGTEE
T ss_pred CCCeEecCCCcEEEEEEEeCcccccceEEEEEeCCCCCcEE----EEEEecC--CCceEe-CcccCCcEEEEEecCCCEE
Confidence 3344568999999999998765 2379999986 322210 0111000 000000 000012333322 25
Q ss_pred eEEEEEeecCCccceeEEEeeccccce----eeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeec-C
Q psy14542 175 ELIIHQVDESDRYRSYQCRGVNKLTGA----SLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQG-N 249 (371)
Q Consensus 175 ~l~i~~~~~~d~~g~y~C~~~~~~~~~----~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~-~ 249 (371)
.|.|.+++.+| +|.|.|.+.+. .+. ..... .+.|..... .+|.+........ +..|+.+.|.|.+.| .
T Consensus 80 ~L~I~~v~~~D-~G~Y~C~~~~~-~~~~~~~~~~~~---~l~V~~~~~-~~P~i~~~~~~~~-~~~g~~v~L~C~~~g~~ 152 (219)
T 1c1e_H 80 YLQINNLKNED-MATYFCARGTT-IVRAMDYWGQGT---SLTVSSAKT-TPPSVYPLAPGSA-AQTNSMVTLGCLVKGYF 152 (219)
T ss_dssp EEEECSCCGGG-CEEEEEEEEET-TTTEEEEECCCE---EEEECCCCC-BCCEEEEECCCSS-SCCSSEEEEEEEEEEEB
T ss_pred EEEECCCCccc-CEEEEEEEecc-CcccceeecCce---EEEEecCCC-CCCeEEEecCccc-cccCCeEEEEEEccccc
Confidence 89999999999 99999999987 321 11222 566663211 2355544333333 678999999999998 8
Q ss_pred CCC-ceEEEeCCcccccC--Cce-----EEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEE
Q psy14542 250 PLP-TIKWYKQDSPVEES--DRI-----QRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFI 306 (371)
Q Consensus 250 p~~-~v~W~~~~~~~~~~--~~~-----~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 306 (371)
|.| .+.|++++..+... ... ....+.|.|..... |.|.|+|.|.|..+.......|
T Consensus 153 P~p~~v~W~~~g~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~-d~g~Y~C~a~n~~~~~~~~~~i 216 (219)
T 1c1e_H 153 PEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSPR-PSETVTCNVAHPASSTKVDKKI 216 (219)
T ss_dssp SSCCEEEEGGGTBCTTEEECCCEESSSCEEEEEEEEEESSST-TTSCCEEEEEEGGGTEEEEEEC
T ss_pred CCCeEEEEEeCCcccceEecCCcccCCeEEEEEEEEEecccC-CCCEEEEEEEeCCCCccEEEec
Confidence 988 99999998764211 110 11224688855444 5699999999998876555444
No 248
>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H
Probab=99.79 E-value=9.2e-18 Score=137.80 Aligned_cols=195 Identities=16% Similarity=0.220 Sum_probs=119.8
Q ss_pred CCceeeecCCcEEEEEEecCCC-CCceEEEeeCC--EEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEec-----cc
Q psy14542 103 SNQVVVDVGHRIELHCRVSPKR-LSSAKAWLKDG--LVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLS-----SG 174 (371)
Q Consensus 103 ~~~~~~~~g~~v~l~C~~~~~~-~~~~v~W~~~~--~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~-----~~ 174 (371)
++...+.+|++++|.|.+.+.+ ..+.+.|++++ ..+. ......... ....+ .....+++.+.. ..
T Consensus 7 p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~----~l~~~~~~~--~~~~~-~~~~~~R~~~~~~~~~~~~ 79 (256)
T 1nqb_A 7 SGAELVKPGASVKLSCKASGYTFTSYWMHWVKQRPGRGLE----WIGRIDPNS--GGTKY-NEKFKSKATLTVDKPSSTA 79 (256)
T ss_dssp CCCEEECTTCCEEEEEEECSSCGGGSCEEEEEEETTTEEE----EEEEECTTT--CCEEE-CGGGTTTEEEEEETTTTEE
T ss_pred CCCeeecCCCcEEEEEEeccccCCCceEEEEEECCCCCcE----EEEEEecCC--Cceee-CcccCCeEEEEEecCCCEE
Confidence 3445568999999999998775 23799999842 2211 001110000 00000 000012333322 25
Q ss_pred eEEEEEeecCCccceeEEEeeccccce--eeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecCCCC
Q psy14542 175 ELIIHQVDESDRYRSYQCRGVNKLTGA--SLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLP 252 (371)
Q Consensus 175 ~l~i~~~~~~d~~g~y~C~~~~~~~~~--~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~ 252 (371)
.|.|.+++.+| +|.|.|.+.+. .+. .........|.|. .+|.+...+.... +..|++++|.|.+.+.|.+
T Consensus 80 ~L~I~~v~~~D-sG~Y~C~~~n~-~g~~~~~~~~~~~~L~V~-----~~~~v~~~p~~~~-v~~G~~v~L~C~~~~~~~~ 151 (256)
T 1nqb_A 80 YMQLSSLTSED-SAVYYCARYDY-YGSSYFDYWGQGTTVTVS-----SDIELTQTPLSLP-VSLGDQASISCRSSQSIVH 151 (256)
T ss_dssp EEEECSCCGGG-CEEEEEEECCT-TSSSSCSEECCCEEEEEC-----CCCCEEEECSEEE-ECTTCCEEEEEEESSCCBC
T ss_pred EEEECcCChhh-CEEEEEEEeec-cCccceeEEcCceeeeec-----ccccEEecCcEEE-EecCCcEEEEeEecCcccc
Confidence 79999999999 99999999987 442 1111111256666 4555555555555 8999999999999988765
Q ss_pred -----ceEEEe--CCcccc------------cCCceEE----ecceEEEeccCCCCCeEEEEEEEcCCCCc-eeEEEEEE
Q psy14542 253 -----TIKWYK--QDSPVE------------ESDRIQR----IGSSLSISHVEESDSGVWNCVANNSEGQD-KMQLFIQY 308 (371)
Q Consensus 253 -----~v~W~~--~~~~~~------------~~~~~~~----~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~v 308 (371)
.+.|++ ++..+. ...++.. ...+|.|.++..+|+|.|+|.|.|..+.. .....|.|
T Consensus 152 ~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt~l~V 231 (256)
T 1nqb_A 152 SNGNTYLEWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYYCFQGSHVPYTFGGGTKLEI 231 (256)
T ss_dssp TTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEE
T ss_pred cccceEEEEEEECCCCCcEEEEEEeCCCCCccCCcEEEEccCCEEEEEECCCChHHCEEEEEEEccCCceEECCCEEEEE
Confidence 899999 555431 1234432 12479999999999999999999854432 22345666
Q ss_pred ecCc
Q psy14542 309 AHGK 312 (371)
Q Consensus 309 ~~~p 312 (371)
..++
T Consensus 232 ~~~~ 235 (256)
T 1nqb_A 232 KRAA 235 (256)
T ss_dssp CC--
T ss_pred ECCC
Confidence 5443
No 249
>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}
Probab=99.79 E-value=6.3e-19 Score=146.15 Aligned_cols=217 Identities=13% Similarity=0.165 Sum_probs=109.9
Q ss_pred CCcCCCeEEEEEEEcCCCCeEEEEEEEEecceeeEecCCceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeE
Q psy14542 66 VQREDAGMYQCHVSADDDSAQMSAQVILGGELVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEV 145 (371)
Q Consensus 66 ~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~ 145 (371)
.+..|.+.|.|.+.+..+.......+.|. .......+.+|++++|.|.+.+ +. ..+.|+|.... ......
T Consensus 3 ~~~~~~~~y~~~~~~~~g~~~~~~~~~v~------~~p~~v~v~~G~~v~L~C~~~~-~~-~~v~W~k~~~~--~~~~~~ 72 (270)
T 3qib_D 3 NERADLIAYLKQATKGGGGSGGGGGMKVI------QTPRYLVKGQGQKAKMRCIPEK-GH-PVVFWYQQNKN--NEFKFL 72 (270)
T ss_dssp -------------------------CCCE------EECSEEEEETTSCEEEEEECCT-TC-CEEEEEEECTT--CCEEEE
T ss_pred chhhhHHHHHHHHhccCCccccccceeEE------eCCCeEEEcCCCCEEEEEEecC-CC-ceEEEEEECCC--CCcEEE
Confidence 45779999999998876654433333332 1112234589999999999865 44 79999983210 000000
Q ss_pred EEEcccCcCCCeeEEEEEeCC-ceeEe----ccceEEEEEeecCCccceeEEEeeccc---cceeeeeeccceeeeecch
Q psy14542 146 LVLDRVQREDAGMYQCHIEDG-KYHML----SSGELIIHQVDESDRYRSYQCRGVNKL---TGASLLSVNRGRLSLTENK 217 (371)
Q Consensus 146 ~~~~~~~~~~~g~y~~~~~~~-~~~~~----~~~~l~i~~~~~~d~~g~y~C~~~~~~---~~~~~~~~~~~~l~v~~~~ 217 (371)
+...+ ..........+ ++.+. .+..|.|.+++.+| +|.|.|.+.+.. ........ .+.|....
T Consensus 73 ~~~~~-----~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D-~G~Y~C~~~~~~~~~~~~~~~~~---~l~V~~~~ 143 (270)
T 3qib_D 73 INFQN-----QEVLQQIDMTEKRFSAECPSNSPCSLEIQSSEAGD-SALYLCASSLNWSQDTQYFGPGT---RLLVLEDL 143 (270)
T ss_dssp EEEET-----TEEEEECHHHHHHEEEECCTTSCEEEEESSCCGGG-CEEEEEEEESCTTCCCCEECCCE---EEEEESCS
T ss_pred EEECC-----CCceecCCccCCcEEEEeCCCcEEEEEECCCCHhH-CeEEEEEEecCCCccceEECCcE---EEEEcccc
Confidence 11000 00000000000 23222 13579999999999 999999998641 11111222 55555311
Q ss_pred -hccccceeeeeeeeeeeecCCeEEEEEEeec-CCCC-ceEEEeCCcccccCCce---------------EEecceEEEe
Q psy14542 218 -RLLSAAKMFEKHRILNVKKDESVILPCSAQG-NPLP-TIKWYKQDSPVEESDRI---------------QRIGSSLSIS 279 (371)
Q Consensus 218 -~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~v~W~~~~~~~~~~~~~---------------~~~~~~l~i~ 279 (371)
...+|.+.........+..|+.++|.|.+.+ .|.+ .+.|+++|..+....+. ....+.|.|.
T Consensus 144 ~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~ 223 (270)
T 3qib_D 144 KNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVS 223 (270)
T ss_dssp TTCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEECSSCEESCTTSSSCCEEEEEEEEEE
T ss_pred ccccCCceEEECCCccccccCCceEEEEEecceeCCCeEEEEEECCEECCCCcccccccccccccCCCCCEEEEEEEEEc
Confidence 1124544433222111556999999999988 6666 79999999877543211 1122457888
Q ss_pred ccCCCC-CeEEEEEEEcCCCCce
Q psy14542 280 HVEESD-SGVWNCVANNSEGQDK 301 (371)
Q Consensus 280 ~~~~~d-~G~Y~C~a~n~~g~~~ 301 (371)
....+| +|.|+|.|.|......
T Consensus 224 ~~~~~d~~g~YtC~v~~~~l~~~ 246 (270)
T 3qib_D 224 ATFWQNPRNHFRCQVQFYGLSEN 246 (270)
T ss_dssp HHHHHSTTCEEEEEEEECCBCTT
T ss_pred HHHhccCCCeEEEEEEecCCCCc
Confidence 887777 9999999999876543
No 250
>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*
Probab=99.78 E-value=1.9e-18 Score=139.04 Aligned_cols=163 Identities=16% Similarity=0.234 Sum_probs=107.7
Q ss_pred EEEeccCcEEEEEEecCCCCCC---eeEEEeCCEEEeeC--------------------------------CeeEEEEcc
Q psy14542 21 VVVDVGHRIELHCRVSPKRLSS---AKAWLKDGLVLRRN--------------------------------SDEVLVLDR 65 (371)
Q Consensus 21 ~~~~~G~~v~l~C~~~~~~~~~---~~~W~~~~~~~~~~--------------------------------~~~~l~i~~ 65 (371)
+.+..|++++|.|.+... +.+ .+.|+|++..+... .+.+|.|.+
T Consensus 11 V~~~~G~~v~L~C~~~~~-~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~ 89 (225)
T 4fmk_A 11 VRGRLGGTVELPCHLLPP-TTERVSQVTWQRLDGTVVAAFHPSFGVDFPNSQFSKDRLSFVRARPETNADLRDATLAFRG 89 (225)
T ss_dssp EEEETTSCEEECCEECSS-CCCEEEEEEEECTTSCEEEEEETTTEEECCCTTSCTTTEEECCCSCSCCSSCCBCCEEECS
T ss_pred EEEecCCCEEEEEEEECC-CCCceeEEEEEECCCcceEEEecccceeeccccccccceeeeccccccccccCcEEEEEcc
Confidence 678999999999976543 333 48999976433110 346799999
Q ss_pred CCcCCCeEEEEEEEcCCCCeE-EEEEEEEecceeeEecCCceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCee
Q psy14542 66 VQREDAGMYQCHVSADDDSAQ-MSAQVILGGELVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDE 144 (371)
Q Consensus 66 ~~~~d~G~Y~C~~~~~~~~~~-~~~~l~v~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~ 144 (371)
++.+|+|.|+|.+.+..+... ....+.+...+.............++.+.+.|.+.+.++++.+.|++++..+......
T Consensus 90 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~P~~~~~w~~~~~~~~~~~~~ 169 (225)
T 4fmk_A 90 LRVEDEGNYTCEFATFPNGTRRGVTWLRVIAQPENHAEAQEVTIGPQSVAVARCVSTGGRPPARITWISSLGGEAKDTQE 169 (225)
T ss_dssp CCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCEEEEEECCBCCSSSCEEEEEEEEEEEBSCCEEEEECSSCCEEEEEEE
T ss_pred CCHHHCcceEEEEEeCCCcceeeeeeeeeecCCceeecccceeecceeeeeeeeeecCCCCCCEEEEEECCccccCCcce
Confidence 999999999999988766543 3444555423333333333334677888888887655444899999987654432110
Q ss_pred EEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeee
Q psy14542 145 VLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLL 204 (371)
Q Consensus 145 ~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~ 204 (371)
..... +.+.. .+.|.|.++..+| +|.|+|.|.|. .+....
T Consensus 170 -------~~~~~---------~~~~~--~s~L~i~~~~~~d-~g~YtC~a~N~-~~~~~~ 209 (225)
T 4fmk_A 170 -------PGIQA---------GTVTI--ISRYSLVPVGRAD-GVKVTCRVEHE-SFEEPI 209 (225)
T ss_dssp -------ECSST---------TCEEE--EEEEEECCCGGGT-TCEEEEEEECT-TCSSCE
T ss_pred -------EEecC---------CCEEE--EEEEEEeeCCHHH-CCEEEEEEEcC-CCCeEE
Confidence 00111 22222 2579999999999 99999999998 554433
No 251
>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A
Probab=99.78 E-value=8.7e-18 Score=136.54 Aligned_cols=170 Identities=18% Similarity=0.317 Sum_probs=108.9
Q ss_pred EEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeC--CEEE-----------------------e--eCCeeEEEEcc
Q psy14542 13 IEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKD--GLVL-----------------------R--RNSDEVLVLDR 65 (371)
Q Consensus 13 ~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~--~~~~-----------------------~--~~~~~~l~i~~ 65 (371)
+...|.. +.+.+|++++|.|. .+.+.+.+.|+|+ +... . .....+|.|.+
T Consensus 3 v~q~p~~-~~v~~G~~v~L~C~--~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~ 79 (238)
T 2p1y_A 3 VTQSPRN-KVAVTGGKVTLSCN--QTNNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQENFSLILEL 79 (238)
T ss_dssp EEEECSE-EEEETTCCEEEEEE--ECSCCSEEEEEEEETTTEEEEEEEESSTTCCEECSSCTTCEEECCSSSBCEEEESS
T ss_pred ceECccc-eEEeCCCEEEEEee--cCCCCccEEEEEECCCCCcEEEEEEecCcceeCCCccceEEEEccCCceEEEEEec
Confidence 4555666 88999999999996 4567889999994 1110 0 00345899999
Q ss_pred CCcCCCeEEEEEEEcCCCCe-----EEEEEEEEeccee-----------eEecCCc-eeeecCCcEEEEEEecCCCCCce
Q psy14542 66 VQREDAGMYQCHVSADDDSA-----QMSAQVILGGELV-----------EIASSNQ-VVVDVGHRIELHCRVSPKRLSSA 128 (371)
Q Consensus 66 ~~~~d~G~Y~C~~~~~~~~~-----~~~~~l~v~~~~~-----------~~~~~~~-~~~~~g~~v~l~C~~~~~~~~~~ 128 (371)
++.+|+|.|.|.+.+..+.. .....|.|...++ .+...+. ..+.+|++++|.|.+.+.+. +.
T Consensus 80 v~~~DsG~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~~~p~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~p~-~~ 158 (238)
T 2p1y_A 80 ATPSQTSVYFCASGDLGQTNERLFFGHGTKLSVLGSADDAKKDAAKKDGQVRQSPQSLTVWEGETAILNCSYENSAF-DY 158 (238)
T ss_dssp CCGGGCEEEEEEEEC------CEEECCCEEEEEECCCHHHHHHHHHHHTCCEEECSEEEEETTSCEEEEEECCCTTC-CE
T ss_pred CCcccCeeEEEEEEeCCCccccceeCCCeEEEEeccCCCCcCCcccceeeEEccCceEEEeCCCeEEEEEEEecCCC-Cc
Confidence 99999999999999865421 1234566653322 3343333 34589999999999998877 89
Q ss_pred EEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEe-----ccceEEEEEeecCCccceeEEEeecc
Q psy14542 129 KAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHML-----SSGELIIHQVDESDRYRSYQCRGVNK 197 (371)
Q Consensus 129 v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~-----~~~~l~i~~~~~~d~~g~y~C~~~~~ 197 (371)
+.|+|++... .....+...... . ...++++.+. ....|.|.+++.+| +|.|+|.+.|.
T Consensus 159 i~W~k~~~~~--~~~~~~~~~~~~---~-----~~~~~r~~~~~~~~~~~~~L~I~~v~~~D-~G~Y~C~a~n~ 221 (238)
T 2p1y_A 159 FPWYQQFPGE--GPALLISILSVS---D-----KKEDGRFTIFFNKREKKLSLHIADSQPGD-SATYFCAAIDT 221 (238)
T ss_dssp EEEEEECTTS--CCEEEEEEETTC---S-----EEEETTEEEEEETTTTEEEEEETTCCGGG-CEEEEEEEEET
T ss_pred EEEEEECCCC--CCEEEEEEccCC---C-----cccCCceEEEecCCCCeEEEEEcCCCHHH-CEEEEEEEeeC
Confidence 9999964100 000111110000 0 0001233332 12579999999999 99999999986
No 252
>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2
Probab=99.78 E-value=1.5e-19 Score=144.21 Aligned_cols=181 Identities=13% Similarity=0.183 Sum_probs=112.9
Q ss_pred ceeeecCCcEEEEEEecCCCCCceEEEeeCC--EEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEe---ccceEEEE
Q psy14542 105 QVVVDVGHRIELHCRVSPKRLSSAKAWLKDG--LVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHML---SSGELIIH 179 (371)
Q Consensus 105 ~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~--~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~---~~~~l~i~ 179 (371)
...+.+|+.++|.|.+.+.+. +.+.|+++. ..+. +.+........+ ..+++.+. ....|.|.
T Consensus 8 ~~~v~~G~~v~L~C~~~~~~~-~~v~W~k~~~g~~~~------~~~~~~~~~~~~------~~~r~~~~~~~~~~~L~I~ 74 (212)
T 1nfd_E 8 SASVTVGETVKITCSGDQLPK-NFAYWFQQKSDKNIL------LLIYMDNKRPSG------IPERFSGSTSGTTATLTIS 74 (212)
T ss_dssp EEEEETTSCCCEEEEETTGGG-SCCEEEEECTTCCEE------EEEBTTTBCCTT------SCTTEEEEEETTEEEEEET
T ss_pred eEEEeCCCcEEEEEecCCCCC-CeEEEEEECCCCCcE------EEEEeccccCCC------ccccEEEEeeCCEEEEEEC
Confidence 344589999999999877765 689999853 2211 001000000000 01122222 22479999
Q ss_pred EeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecC-CC-CceEEE
Q psy14542 180 QVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGN-PL-PTIKWY 257 (371)
Q Consensus 180 ~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-~~v~W~ 257 (371)
+++.+| +|.|+|.+.+...+...... ...+.|.... ..+|.+........ +..|+.+.|.|.+.|. |+ +.+.|+
T Consensus 75 ~v~~~D-~G~Y~C~~~n~~~~~~~~~~-~~~l~V~~~~-~~~p~v~~~~~~~~-~~~g~~v~L~C~~~g~~p~~~~v~W~ 150 (212)
T 1nfd_E 75 GAQPED-EAAYYCLSSYGDNNDLVFGS-GTQLTVLRGP-KSSPKVTVFPPSPE-ELRTNKATLVCLVNDFYPGSATVTWK 150 (212)
T ss_dssp TCCGGG-CSEEEEEEEETTTTEEEECC-CEEEEEECCC-CBCCEEECCCCCHH-HHHTTEECCCEEEEEEBSSCCEEEEE
T ss_pred cCCccc-CEEEEEEEEcccCcccccCC-ceEEEEccCC-CCCCEEEeeCCchH-hccCCceEEEEEEEeeECCccEEEEE
Confidence 999999 99999999963122211111 1145553211 13455554333333 5679999999999986 54 799999
Q ss_pred eCCcccccCCce---------EEecceEEEeccCCCCCeEEEEEEEcCCCCcee
Q psy14542 258 KQDSPVEESDRI---------QRIGSSLSISHVEESDSGVWNCVANNSEGQDKM 302 (371)
Q Consensus 258 ~~~~~~~~~~~~---------~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~ 302 (371)
++|..+...... ....+.|.|.++..+|+|.|+|.|.|..+....
T Consensus 151 k~g~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~ 204 (212)
T 1nfd_E 151 ANGATINDGVKTTKPSKQGQNYMTSSYLSLTADQWKSHNRVSCQVTHEGETVEK 204 (212)
T ss_dssp ETTEEECSSCBCCCCBCSSSCEEEEEBCCEEHHHHHTCSCEEEEEECTTTTCCC
T ss_pred ECCeEcCCCeecCCceecCCCceEEEEEEEchhhcCCCCeEEEEEEeCCceEEE
Confidence 999877544221 112356899999999999999999999876433
No 253
>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...
Probab=99.78 E-value=3.1e-18 Score=137.07 Aligned_cols=184 Identities=13% Similarity=0.202 Sum_probs=112.8
Q ss_pred ceeeecCCcEEEEEEecCCC-CCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEe---ccceEEEEE
Q psy14542 105 QVVVDVGHRIELHCRVSPKR-LSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHML---SSGELIIHQ 180 (371)
Q Consensus 105 ~~~~~~g~~v~l~C~~~~~~-~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~---~~~~l~i~~ 180 (371)
...+.+|++++|.|.+.+.+ ..+.+.|++++... ...+.+........+ ..+++... .+..|.|.+
T Consensus 9 ~~~v~~G~~v~L~C~v~~~~~~~~~v~W~k~~~~~----~~~~~~~~~~~~~~~------~~~r~~~~~~~~~~~L~I~~ 78 (216)
T 2xzc_L 9 SVSAAPGQKVTISCSGSSSNIGNNYVSWYQQLPGT----APKLLIYDNNKRPSG------IPDRFSGSKSGTSATLGITG 78 (216)
T ss_dssp EEEECTTCCEEEEEECCTTTGGGSCCEEEEECTTS----CCEEEEBTTTBCCTT------CCTTEEEEEETTEEEEEECS
T ss_pred cEEecCCCeEEEEEEeecCCCCCCeEEEEEeCCCC----CcEEEEEecCccCCC------CCCceEEeccCCEEEEEECC
Confidence 34458999999999964433 23789999854200 000111100000000 01122222 124799999
Q ss_pred eecCCccceeEEEeeccccc--eeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeec-CCCC-ceEE
Q psy14542 181 VDESDRYRSYQCRGVNKLTG--ASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQG-NPLP-TIKW 256 (371)
Q Consensus 181 ~~~~d~~g~y~C~~~~~~~~--~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~v~W 256 (371)
++.+| +|.|.|.+.+. .+ ...... .+.|... ..+|.+........ ...|+.++|.|.+.| .|.+ .+.|
T Consensus 79 v~~~D-~G~Y~C~~~~~-~~~~~~~~~~---~l~V~~~--~~~P~v~~~~~~~~-~~~g~~v~L~C~~~g~~P~~~~v~W 150 (216)
T 2xzc_L 79 LQTGD-EADYYCGTWDS-SLNPVFGGGT---KLEIKRT--VAAPSVFIFPPSDE-QLKSGTASVVCLLNNFYPREAKVQW 150 (216)
T ss_dssp CCGGG-CEEEEEEEECT-TSCEEEBCCE---EEEECCC--CBCCEEEEECCCHH-HHHTTEEEEEEEEEEEBSSCCEEEE
T ss_pred CCccc-CEEEEEEEEeC-CCcceECCCE---EEEEcCC--CCCCceEEeCCChh-hccCCcEEEEEEEEeEcCCceEEEE
Confidence 99999 99999999987 43 112222 4555421 13455554333222 346889999999988 5554 8999
Q ss_pred EeCCcccccC-Cc---eE-------EecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEE
Q psy14542 257 YKQDSPVEES-DR---IQ-------RIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFI 306 (371)
Q Consensus 257 ~~~~~~~~~~-~~---~~-------~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 306 (371)
+++|..+..+ .. .. ...+.|.|..+..+|+|.|+|.|.|..........+
T Consensus 151 ~k~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~i 211 (216)
T 2xzc_L 151 KVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSF 211 (216)
T ss_dssp EETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSSCEEEEE
T ss_pred EECCeecCCCeeEecCcccCCCCCEEEEEEEEECHHHhCCCCcEEEEEEcCCCCCceEEec
Confidence 9999887654 11 00 112368999999999999999999988765444433
No 254
>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}
Probab=99.78 E-value=9.1e-19 Score=140.79 Aligned_cols=168 Identities=18% Similarity=0.261 Sum_probs=112.5
Q ss_pred EEEeccCcEEEEEEecCCC----CCCeeEEEeCCEEE-----------eeC--------------CeeEEEEccCCcCCC
Q psy14542 21 VVVDVGHRIELHCRVSPKR----LSSAKAWLKDGLVL-----------RRN--------------SDEVLVLDRVQREDA 71 (371)
Q Consensus 21 ~~~~~G~~v~l~C~~~~~~----~~~~~~W~~~~~~~-----------~~~--------------~~~~l~i~~~~~~d~ 71 (371)
+.+.+|++++|.|.+.... ....+.|++++... ... ...+|.|.+++.+|+
T Consensus 5 v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~~D~ 84 (222)
T 4i0k_A 5 VVALVDTDATLRCSFSPEPGFSLAQLNLIWQLTDTKQLVHSFTEGRDQGSAYSNRTALFPDLLVQGNASLRLQRVRVTDE 84 (222)
T ss_dssp CCCCTTSCEEECCBCCCCTTCCTTTEEEEEEETTTCCEEEEEETTEEEEESSCSCEECCTTTGGGTBCCEEECSCCGGGC
T ss_pred EEEECCCCeEEEEEecCCCCCCCCceEEEEEECCCccEEEEEcCCcccccceeCcEEEecccccCCeEEEEECCcccccC
Confidence 6789999999999654321 22679999976322 000 267899999999999
Q ss_pred eEEEEEEEcCCCCeEEEEEEEEec--ceeeEecCCceeeecCCcEEEEEEe-cCCCCCceEEEee-CCEEeeeCCeeEEE
Q psy14542 72 GMYQCHVSADDDSAQMSAQVILGG--ELVEIASSNQVVVDVGHRIELHCRV-SPKRLSSAKAWLK-DGLVLRRNSDEVLV 147 (371)
Q Consensus 72 G~Y~C~~~~~~~~~~~~~~l~v~~--~~~~~~~~~~~~~~~g~~v~l~C~~-~~~~~~~~v~W~~-~~~~~~~~~~~~~~ 147 (371)
|.|+|.+.+.. .....+.|.|.. ..+.+...+...+.+|+.++|.|.+ .+.|. +.+.|++ ++..+.........
T Consensus 85 G~Y~C~~~~~~-~~~~~~~l~V~~~~~~p~i~~~~~~~v~~G~~~~l~C~~~~g~P~-~~v~W~~~~~~~~~~~~~~~~~ 162 (222)
T 4i0k_A 85 GSYTCFVSIQD-FDSAAVSLQVAAPYSKPSMTLEPNKDLRPGNMVTITCSSYQGYPE-AEVFWKDGQGVPLTGNVTTSQM 162 (222)
T ss_dssp SCEEEEEEECC-CCCCCCCCCCCBCCCCCEEECCC-----CCSEEEEEEEEEEEBSC-CEEEEECTTSCBCCSEEEEEEE
T ss_pred EEEEEEEEeCC-CceEEEEEEEEcCCCCCcEEeCCCceecCCceEEEEEecccccCC-CeEEEEcCCCccCCCCcceeEE
Confidence 99999999753 344455566652 2355665555556789999999999 66666 8999998 44433321110000
Q ss_pred EcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeee
Q psy14542 148 LDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLT 214 (371)
Q Consensus 148 ~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~ 214 (371)
....| .+ ..|.|.++..+| .|.|+|.+.|. .+...... .+.|.
T Consensus 163 -----~~~~~---------~~-----~~l~i~~v~~~d-~G~Y~C~a~n~-~g~~~~~~---~l~V~ 205 (222)
T 4i0k_A 163 -----ANERG---------LF-----DVHSVLRVVLGA-NGTYSCLVRNP-VLQQDAHG---SVTIT 205 (222)
T ss_dssp -----ECTTS---------CE-----EEEEEEEEECCT-TCEEEEEEEET-TTTEEEEE---EEECC
T ss_pred -----cCCCC---------eE-----EEEEEEEEEeCC-CCEEEEEEECC-CCCCceEE---EEEEe
Confidence 00111 11 347899999999 99999999999 77777666 78777
No 255
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative splicing, cell adhesion, cell membrane, glycoprotein, HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3uro_R 3epc_R* 3epd_R* 3epf_R*
Probab=99.78 E-value=8.5e-19 Score=140.84 Aligned_cols=182 Identities=16% Similarity=0.252 Sum_probs=118.0
Q ss_pred eeeecCCcEEEEEEecCC-CC---CceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEe--------cc
Q psy14542 106 VVVDVGHRIELHCRVSPK-RL---SSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHML--------SS 173 (371)
Q Consensus 106 ~~~~~g~~v~l~C~~~~~-~~---~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~--------~~ 173 (371)
..+.+|++++|.|.+.+. +. ...+.|++++...... ..... ....| ...++..+. .+
T Consensus 9 v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~----~~~~~----~~~~~---~~~~r~~~~~~~~~~~~~~ 77 (221)
T 3eow_R 9 VPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMA----VFHQT----QGPSY---SESKRLEFVAARLGAELRD 77 (221)
T ss_dssp CCCCCSSCCEEECCCCCCSSSCCCEEEEEECBSSSCSSCC----CEEES----SSEEE---CSCSSCEEESSCSSCCCCC
T ss_pred EEEEeCCCEEEEeeeccCCCCCccceEEEEEeCCCCceEE----EEECC----CCCCc---CCCCcEEEecccCCCCCCC
Confidence 344789999999999543 22 1349999985421110 00000 00000 001233332 24
Q ss_pred ceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeE-EEEEEee-cCCC
Q psy14542 174 GELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESV-ILPCSAQ-GNPL 251 (371)
Q Consensus 174 ~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~-~l~C~~~-~~p~ 251 (371)
..|.|.+++.+| +|.|+|.+.+...+...... .|.|. .+|.+....... ...|+.+ .|.|.+. +.|.
T Consensus 78 ~sL~I~~v~~~D-~G~Y~C~~~~~~~~~~~~~~---~L~V~-----~~P~~~~~~~~~--~~~g~~~~~l~C~~~~g~P~ 146 (221)
T 3eow_R 78 ASLRMFGLRVED-EGSYTCLFVTFPQGSRSVDI---WLRVL-----AKPQNTAEVQKV--QLTGEPVPMARCVSTGGRPP 146 (221)
T ss_dssp CEEECCCSSCCC-CSCBEEEEEESSSCSCEEEC---CCCCC-----CCCEEEEEEECC--CCCSSSCCEEEEEEESCSSC
T ss_pred ceEEEccCChHH-CeEEEEEEEeCCCCceEEEE---EEEEE-----ECCCceeecCCc--ccCCceEEEEEEECCCccCC
Confidence 689999999999 99999999987325555555 77777 566665444332 2567788 5999987 7899
Q ss_pred CceEEEeCCcccccCCce-------EEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEe
Q psy14542 252 PTIKWYKQDSPVEESDRI-------QRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYA 309 (371)
Q Consensus 252 ~~v~W~~~~~~~~~~~~~-------~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 309 (371)
+.++|++++......... ....+.|.|..+..+|+|.|+|.|.|..+.....+.|.+.
T Consensus 147 p~v~W~k~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~ytC~a~n~~~~~~~~~~v~~~ 211 (221)
T 3eow_R 147 AQITWHSDLGGMPQTSQVPGFLSGTVTVTSLWILVPSSQVDGKQVTCKVEHESFEKPQLLTVSLT 211 (221)
T ss_dssp CCEEEECSSSCCCCCEEECCCCBTTBCCEEEEECCCCSCCCCCCEEEEECCSCSSSCEEEEECCC
T ss_pred CeeEEEeCCCCCCccceeecCCCCcEEEEEEEEEeCCHHHCCCeEEEEEECCCCCCCeEEEEEEE
Confidence 999999875543322111 1123469999999999999999999999887666555443
No 256
>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L
Probab=99.78 E-value=5e-18 Score=139.20 Aligned_cols=171 Identities=18% Similarity=0.259 Sum_probs=114.5
Q ss_pred cceEEEeCCCcEEEeccCcEEEEEEecCCCC-----CCeeEEEeCC--E---EEe------------------eCCeeEE
Q psy14542 10 SLSIEMSPSGQVVVDVGHRIELHCRVSPKRL-----SSAKAWLKDG--L---VLR------------------RNSDEVL 61 (371)
Q Consensus 10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~-----~~~~~W~~~~--~---~~~------------------~~~~~~l 61 (371)
++.+...|.. +.+.+|++++|.|.+. +.+ .+.+.|+|++ . .+. .....+|
T Consensus 34 ~~~v~~~p~~-~~v~~G~~v~L~C~~~-~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L 111 (252)
T 3bkj_L 34 DVLMTQTPLS-LPVNLGEQASISCRSS-QSIVHSNGHTYLEWYLQRPGQSPKLLIYQVSTRFSGVPDRFSGSGSGTDFTL 111 (252)
T ss_dssp CCCEEEECSE-EEECTTSCEEEEEEES-SCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEE
T ss_pred ccEEEeCCce-EEEeCCCcEEEEEEcC-CCccccCCCCcEEEEEECCCCCcEEEEEcCCcccCCcCCceEEEccCCEEEE
Confidence 4566666776 8899999999999654 444 5789999953 1 111 0134589
Q ss_pred EEccCCcCCCeEEEEEEEcCCCCe-EEEEEEEEec--ceeeEecCC-ceeeecCCcEEEEEEecCCCC-CceEEEeeCCE
Q psy14542 62 VLDRVQREDAGMYQCHVSADDDSA-QMSAQVILGG--ELVEIASSN-QVVVDVGHRIELHCRVSPKRL-SSAKAWLKDGL 136 (371)
Q Consensus 62 ~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~v~~--~~~~~~~~~-~~~~~~g~~v~l~C~~~~~~~-~~~v~W~~~~~ 136 (371)
.|.+++.+|+|.|.|.+.+..+.. .....|.|.. .+|.+...+ .....+|+.++|.|.+.+.++ +..++|++++.
T Consensus 112 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~ 191 (252)
T 3bkj_L 112 RISRVEAEDLGVYYCFQASLVPLTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGS 191 (252)
T ss_dssp EESSCCGGGCEEEEEEECSBSSCEECCCEEEEECCCCBCCEEEEECCCHHHHHHTEEEEEEEEEEEBSSCCEEEEEETTE
T ss_pred EECCCCcccCEEEEEEEEcCCccEECCCEEEEEeCCCcCcEEEEeCCChhhcCCCcEEEEEEEeeEeCCCcEEEEEECCe
Confidence 999999999999999998765432 1224566652 234444322 222246899999999988543 24899999998
Q ss_pred EeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeecc
Q psy14542 137 VLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNK 197 (371)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~ 197 (371)
.+..... ..........|.| .. .+.|.|.++..+| .|.|+|.+.|.
T Consensus 192 ~~~~~~~---~~~~~~~~~~g~~---------~~--~s~L~i~~~~~~d-~g~Y~C~a~n~ 237 (252)
T 3bkj_L 192 ERQNGVL---NSWTDQDSKDSTY---------SM--SSTLTLTKDEYER-HNSYTCEATHK 237 (252)
T ss_dssp EECSSEE---EEECCCCTTTCCE---------EE--EEEEEEEHHHHHH-CCEEEEEEECT
T ss_pred ecCCCee---eecCcccCCCCCE---------EE--EEEEEEcchhccC-CCeEEEEEEeC
Confidence 7754310 0111112222322 11 2578999999999 99999999987
No 257
>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A
Probab=99.78 E-value=1.9e-17 Score=135.79 Aligned_cols=196 Identities=16% Similarity=0.176 Sum_probs=117.9
Q ss_pred ceeeecCCcEEEEEEecCCC-CCceEEEeeC--CEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEec-----cceE
Q psy14542 105 QVVVDVGHRIELHCRVSPKR-LSSAKAWLKD--GLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLS-----SGEL 176 (371)
Q Consensus 105 ~~~~~~g~~v~l~C~~~~~~-~~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~-----~~~l 176 (371)
...+.+|++++|.|.+.+.+ ..+.+.|+|. +..+. ..+.... .+..........+++.+.. ...|
T Consensus 10 ~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~----~~~~~~~---~~~~~~~~~~~~~r~~~~~~~~~~~~~L 82 (253)
T 3uzq_A 10 AELVKPGASVRLSCTASGFNIKDTYMSWVKQRPEQGLE----WIGRIDP---ANGDTKYDPKFQGKATITADTSSNTAYL 82 (253)
T ss_dssp CEEECTTCCEEEEEEECSSCGGGSCEEEEEECTTCCEE----EEEEEET---TTTEEEECGGGTTTEEEEEETTTTEEEE
T ss_pred CeeecCCCcEEEEEEeeCCcccCceEEEEEeCCCCCCE----EEEEEcc---CCCcceeCCcCCCcEEEEeecCCCeEEE
Confidence 34458999999999998753 1279999983 21111 0111100 0000000000012333322 2359
Q ss_pred EEEEeecCCccceeEEEeecccccee-eeeeccceeeeecc----------hhccccceeeeeeeeeeeecCCeEEEEEE
Q psy14542 177 IIHQVDESDRYRSYQCRGVNKLTGAS-LLSVNRGRLSLTEN----------KRLLSAAKMFEKHRILNVKKDESVILPCS 245 (371)
Q Consensus 177 ~i~~~~~~d~~g~y~C~~~~~~~~~~-~~~~~~~~l~v~~~----------~~~~~p~~~~~~~~~~~~~~g~~~~l~C~ 245 (371)
.|.+++.+| +|.|.|.+.+. .+.. .... .+.|... ....++.+...+.... +.+|++++|.|.
T Consensus 83 ~I~~v~~~D-sG~Y~C~~~~~-~~~~~~~~~---~l~V~~~~~~~~~~~~~~~~~~~~v~~~p~~~~-v~~G~~v~L~C~ 156 (253)
T 3uzq_A 83 HLSSLTSGD-TAVYYCSRGWE-GFAYWGQGT---LVTVSAGGGGSGGGGSGGGGSELVMTQTPASLA-VSLGQRATISCR 156 (253)
T ss_dssp EECSCCGGG-CEEEEEEECSS-SCCEECCCE---EEEECSSSCCCCC---------CCEEEECSEEE-ECTTSCEEEEEE
T ss_pred EeCCCCccc-CEEEEEEEeeC-CccEECCCc---EEEEecCCccccccccCCCcccceEECcCCeEE-EeCCCCEEEEEE
Confidence 999999999 99999999985 3322 2223 5666531 1112455555555566 999999999999
Q ss_pred eecCCCC----ceEEEeCC--cccc------------cCCceEEe----cceEEEeccCCCCCeEEEEEEEcCCCCc-ee
Q psy14542 246 AQGNPLP----TIKWYKQD--SPVE------------ESDRIQRI----GSSLSISHVEESDSGVWNCVANNSEGQD-KM 302 (371)
Q Consensus 246 ~~~~p~~----~v~W~~~~--~~~~------------~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~a~n~~g~~-~~ 302 (371)
+.+.+.+ .+.|++++ ..+. ...++... ..+|.|.++..+|+|.|.|.|.|..+.. ..
T Consensus 157 ~~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~~~~~fg~ 236 (253)
T 3uzq_A 157 ASENVDRYGNSFMHWYQQKAGQPPKLLIYRASNLESGIPARFSGSGSRTDFTLTINPVEADDVATYFCQRSNEVPWTFGG 236 (253)
T ss_dssp ESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCCBCC
T ss_pred ecCccccCCCcEEEEEEECCCCCCEEEEEEccccCCccCCceEEeCCCCEEEEEECCCCHHHCEEEEEEEccCCCcEECC
Confidence 9988876 89999853 2221 11333321 2369999999999999999999976543 33
Q ss_pred EEEEEEecCcc
Q psy14542 303 QLFIQYAHGKY 313 (371)
Q Consensus 303 ~~~l~v~~~p~ 313 (371)
-..|.|...++
T Consensus 237 gt~l~v~~~~~ 247 (253)
T 3uzq_A 237 GTKLEIKRPLE 247 (253)
T ss_dssp CEEEEECCC--
T ss_pred CEEEEEcCCCC
Confidence 45677766555
No 258
>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L
Probab=99.78 E-value=1.1e-17 Score=139.08 Aligned_cols=174 Identities=21% Similarity=0.362 Sum_probs=112.7
Q ss_pred cccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCC-----EEEee------------------CCeeEEEEc
Q psy14542 8 KSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDG-----LVLRR------------------NSDEVLVLD 64 (371)
Q Consensus 8 ~~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~-----~~~~~------------------~~~~~l~i~ 64 (371)
...+.+...|.. +.+.+|++++|.|.+ .+.+.+.+.|+|++ ..+.. ....+|.|.
T Consensus 10 ~~~~~v~~~p~~-~~v~~G~~v~L~C~~-~~~p~~~i~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~ 87 (276)
T 3auv_A 10 SGDIQMTQSPSS-LSASVGDRVTITCRA-SQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTIS 87 (276)
T ss_dssp --CCCEEEECSE-EECCTTCCEEEEEEE-SSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEES
T ss_pred ccceeEEeCCCe-EEEcCCCCEEEEeEc-CCCCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCCEEEeccCCeEEEEEc
Confidence 345677777877 889999999999965 45567889999853 12211 134589999
Q ss_pred cCCcCCCeEEEEEEEcCCCC-eEEEEEEEEecce------------e--eEecCCceeeecCCcEEEEEEecCCCC-Cce
Q psy14542 65 RVQREDAGMYQCHVSADDDS-AQMSAQVILGGEL------------V--EIASSNQVVVDVGHRIELHCRVSPKRL-SSA 128 (371)
Q Consensus 65 ~~~~~d~G~Y~C~~~~~~~~-~~~~~~l~v~~~~------------~--~~~~~~~~~~~~g~~v~l~C~~~~~~~-~~~ 128 (371)
+++.+|+|.|.|.+.+..+. ......|.|...+ + .+.......+.+|++++|.|.+.+.++ .+.
T Consensus 88 ~v~~~DsG~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~p~~~~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~ 167 (276)
T 3auv_A 88 SLQPEDFATYYCQQHYTTPPTFGCGTKVEIKGGGGGSIEGRSGGGGSEVQLVESGGGLVQPGGSLRLSCAASGFTISDYW 167 (276)
T ss_dssp SCCGGGCEEEEEEECSSSSCCCCCCEEEEC-----------------CCEEEEECCEEECTTCCEEEEEEEESSCGGGSE
T ss_pred cCChhhCEEEEEEEecCCcccccCCEEEEEecCCCccccccccccCcceEEECCCceEecCCCeEEEEEEecCccCCCCE
Confidence 99999999999999986543 2223456665221 1 122233445589999999999987652 379
Q ss_pred EEEeeCC--EEeeeCCeeEEEEccc------CcCCCeeEEEEEeCCceeEec-----cceEEEEEeecCCccceeEEEee
Q psy14542 129 KAWLKDG--LVLRRNSDEVLVLDRV------QREDAGMYQCHIEDGKYHMLS-----SGELIIHQVDESDRYRSYQCRGV 195 (371)
Q Consensus 129 v~W~~~~--~~~~~~~~~~~~~~~~------~~~~~g~y~~~~~~~~~~~~~-----~~~l~i~~~~~~d~~g~y~C~~~ 195 (371)
+.|++++ ..+. ....+... ..... +++.+.. ...|.|.+++.+| +|.|+|.+.
T Consensus 168 v~W~k~~~g~~~~----~l~~~~~~~~~~~~~~~~~---------~r~~~~~~~~~~~~~L~I~~v~~~D-sG~Y~C~a~ 233 (276)
T 3auv_A 168 IHWVRQAPGKCLE----WVAGITPAGGYTYYADSVK---------GRFTISADTSKNTAYLQMNSLRAED-TAVYYCARF 233 (276)
T ss_dssp EEEEEECTTCCEE----EEEEECGGGCCEEECTTTT---------TTEEEEEEGGGTEEEEEECSCCGGG-CEEEEEEEE
T ss_pred EEEEEcCCCCCcE----EEEEEeccCCccccccccC---------CcEEEEecCCCcEEEEEECCCChhH-CEEEEEEEE
Confidence 9999963 1110 01111100 00111 2333322 1479999999999 999999999
Q ss_pred cc
Q psy14542 196 NK 197 (371)
Q Consensus 196 ~~ 197 (371)
|.
T Consensus 234 n~ 235 (276)
T 3auv_A 234 VF 235 (276)
T ss_dssp CS
T ss_pred cC
Confidence 86
No 259
>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*
Probab=99.77 E-value=1.4e-17 Score=136.39 Aligned_cols=177 Identities=18% Similarity=0.300 Sum_probs=110.5
Q ss_pred cceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCC-----EEEee------------------CCeeEEEEccC
Q psy14542 10 SLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDG-----LVLRR------------------NSDEVLVLDRV 66 (371)
Q Consensus 10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~-----~~~~~------------------~~~~~l~i~~~ 66 (371)
.+.+...|.. +.+.+|++++|.|.+ .+.+.+.+.|+|+. ..+.. ....+|.|.++
T Consensus 4 ~~~v~~~p~~-~~v~~G~~v~L~C~~-~~~~~~~i~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v 81 (250)
T 3esu_F 4 DIVLIQSTSS-LSASLGDRVTISCRA-SQDIRNYLNWYQQKPDGTVKLLIYYTSRLQSGVPSRFSGSGSGTDYSLTISNL 81 (250)
T ss_dssp CCCEECSCSE-EEECTTCCEEEEEEE-SSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSC
T ss_pred ceeEEecCCE-EEeeCCCcEEEEEEe-cccCCceEEEEEECCCCCCEEEEEEeCCCCCCCCCCEEEeCCCCEEEEEEccC
Confidence 3456666666 889999999999965 45667799999842 11110 03448999999
Q ss_pred CcCCCeEEEEEEEcCCCCe-EEEEEEEEecc-------------------eeeEecCCceeeecCCcEEEEEEecCCCC-
Q psy14542 67 QREDAGMYQCHVSADDDSA-QMSAQVILGGE-------------------LVEIASSNQVVVDVGHRIELHCRVSPKRL- 125 (371)
Q Consensus 67 ~~~d~G~Y~C~~~~~~~~~-~~~~~l~v~~~-------------------~~~~~~~~~~~~~~g~~v~l~C~~~~~~~- 125 (371)
+.+|+|.|.|.+.+..+.. .....|.|... ++.+...+...+.+|++++|.|.+.+.+.
T Consensus 82 ~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~ 161 (250)
T 3esu_F 82 EQEDIGTYFCQQGNTLPWTFGGGTKLEIRRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPELVKPGASVKISCKDSGYAFS 161 (250)
T ss_dssp CGGGCEEEEEEECSSSSCEECCCEEEEEC------------------------CEECCCEEECTTCCEEEEEECCSTTGG
T ss_pred ChhhCEEEEEEEeeCCCceECCCEEEEEECCCCcccccccccccccCcccceEEecCCceEEcCCceEEEEEEecCCccc
Confidence 9999999999998765442 23345666531 12233334455589999999999987651
Q ss_pred CceEEEeeC--CEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEecc-----ceEEEEEeecCCccceeEEEeec
Q psy14542 126 SSAKAWLKD--GLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSS-----GELIIHQVDESDRYRSYQCRGVN 196 (371)
Q Consensus 126 ~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~-----~~l~i~~~~~~d~~g~y~C~~~~ 196 (371)
.+.+.|+++ +..+.. ...+... +..........+++.+..+ ..|.|.+++.+| +|.|.|.+.+
T Consensus 162 ~~~v~W~k~~~~~~~~~----~~~~~~~---~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D-sG~Y~C~~~~ 231 (250)
T 3esu_F 162 SSWMNWVKQRPGQGPEW----IGRIYPG---DGDTNYNGKFKGKATLTADKSSSTAYMQLSSLTSVD-SAVYFCARSG 231 (250)
T ss_dssp GSEEEEEEECTTSCCEE----EEEEETT---TTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGG-CEEEEEEEEC
T ss_pred CCEEEEEEECCCCCcEE----EEEEecc---CCccccCccccceEEEEecCCCCeEEEEECCCCccc-CEEEEEEEec
Confidence 379999996 332211 0111000 0000000000123333322 369999999999 9999999986
No 260
>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...
Probab=99.77 E-value=5.4e-18 Score=136.57 Aligned_cols=195 Identities=15% Similarity=0.146 Sum_probs=115.6
Q ss_pred CceeeecCCcEEEEEEecCCCC-CceEEEeeCC--EEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEe-----ccce
Q psy14542 104 NQVVVDVGHRIELHCRVSPKRL-SSAKAWLKDG--LVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHML-----SSGE 175 (371)
Q Consensus 104 ~~~~~~~g~~v~l~C~~~~~~~-~~~v~W~~~~--~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~-----~~~~ 175 (371)
+...+.+|++++|.|.+.+.+. ...+.|+|.+ ..+. ..+.+.... ....+ .....+++.+. .+..
T Consensus 8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~----~l~~~~~~~--~~~~~-~~~~~~R~~~~~~~~~~~~s 80 (227)
T 1mju_H 8 GAELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLE----WIGNIYPGS--SYTHY-NEKFKNKATLTVDTSSSTAY 80 (227)
T ss_dssp SEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEE----EEEEEETTT--TEEEE-CGGGTTTEEEEEETTTTEEE
T ss_pred CCeEEcCCCCEEEEEEecCCccccceEEEEEeCCCCCcE----EEEEEeccC--Cceee-CCccCCcEEEEEeCCCCeEE
Confidence 3444589999999999987651 2789999853 2111 011111000 00000 00001233333 2358
Q ss_pred EEEEEeecCCccceeEEEeeccccce-eeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecC-CCC-
Q psy14542 176 LIIHQVDESDRYRSYQCRGVNKLTGA-SLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGN-PLP- 252 (371)
Q Consensus 176 l~i~~~~~~d~~g~y~C~~~~~~~~~-~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~- 252 (371)
|.|.+++.+| +|.|.|.+.+. ... ..... .|.|..... .+|.+........ +..|+.++|.|.+.|. |.+
T Consensus 81 L~I~~v~~~D-~G~Y~C~~~~~-~~~~~~~~~---~L~V~~~~~-~~P~v~~~~~~~~-~~~g~~v~L~C~~~g~~P~p~ 153 (227)
T 1mju_H 81 MQLSSLTSDD-SAVYYCANKLG-WFPYWGQGT---LVTVSAAKT-TAPSVYPLAPVCG-DTSGSSVTLGCLVKGYFPEPV 153 (227)
T ss_dssp EEECSCCGGG-CEEEEEEEEET-TEEEECCCE---EEEECSSCC-BCCEEEEECCCC-------CEEEEEEEEEEBSSCC
T ss_pred EEECCCCccc-CEEEEEEECCC-CceEEcCcE---EEEEcCCCC-CCCEEEEecCCcc-ccCCCcEEEEEEeecEeCCCe
Confidence 9999999999 99999999875 221 11222 566653211 2344443322223 6789999999999985 766
Q ss_pred ceEEEeCCccccc--CCc-----eEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEecCcc
Q psy14542 253 TIKWYKQDSPVEE--SDR-----IQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKY 313 (371)
Q Consensus 253 ~v~W~~~~~~~~~--~~~-----~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~ 313 (371)
.+.|++++..+.. ... .....+.|.|..+..+| |.|+|.|.|..+.......+.+..+|.
T Consensus 154 ~v~W~~~g~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~~~~~~~~~p~ 220 (227)
T 1mju_H 154 TLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVDKKIEPRGPTI 220 (227)
T ss_dssp EEEEGGGTBCTTEEECCCEEETTEEEEEEEEEECTTTTTT-SCCEEEEEEGGGTEEEEEECCCCCC--
T ss_pred EEEEecCCCcCCcEECCceecCCeEEEEEEEEEchhhcCC-CeEEEEEEECCCCcceEEEeCCCCCCC
Confidence 8999999876421 111 11234578998888888 999999999888877777777777766
No 261
>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1
Probab=99.77 E-value=1.2e-17 Score=136.58 Aligned_cols=161 Identities=20% Similarity=0.328 Sum_probs=104.9
Q ss_pred EEEeccCcEEEEEEecCCCC--CCeeEEEeCC--E--E-E----------------------ee---CCeeEEEEccCCc
Q psy14542 21 VVVDVGHRIELHCRVSPKRL--SSAKAWLKDG--L--V-L----------------------RR---NSDEVLVLDRVQR 68 (371)
Q Consensus 21 ~~~~~G~~v~l~C~~~~~~~--~~~~~W~~~~--~--~-~----------------------~~---~~~~~l~i~~~~~ 68 (371)
..+.+|++++|.|.+. +.| .+.+.|+|++ . . + .. ....+|.|.+++.
T Consensus 12 ~~v~~G~~v~L~C~~~-g~p~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~ 90 (247)
T 2ghw_B 12 GVVQPGKSLRLSCAAS-GFAFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSLRA 90 (247)
T ss_dssp EEECTTCCEEEEEEEE-SSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred EEEecCCcEEEEEEec-cccCCCceEEEEEeCCCCceEEEEEEecCCCceeeCccccCcEEEEEeCCCCEEEEEECcCCH
Confidence 7899999999999654 444 5779999831 1 0 1 00 0346899999999
Q ss_pred CCCeEEEEEEEcCCCC--eEEEEEEEEecc--------------eeeEecCCc-eeeecCCcEEEEEEecCCCCCceEEE
Q psy14542 69 EDAGMYQCHVSADDDS--AQMSAQVILGGE--------------LVEIASSNQ-VVVDVGHRIELHCRVSPKRLSSAKAW 131 (371)
Q Consensus 69 ~d~G~Y~C~~~~~~~~--~~~~~~l~v~~~--------------~~~~~~~~~-~~~~~g~~v~l~C~~~~~~~~~~v~W 131 (371)
+|+|.|+|.+.+..+. ......|.|... ++.+...+. ..+.+|++++|.|.+.+.+. +.+.|
T Consensus 91 ~D~G~Y~C~~~n~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~-~~v~W 169 (247)
T 2ghw_B 91 EDTAVYYCARDRSYYLDYWGQGTLVTVSSGGGGSGGGGSGGGGSETTLTQSPATLSLSPGERATLSCRASQSVR-SNLAW 169 (247)
T ss_dssp GGCEEEEEEEEETTEEEEECCCEEEEECSCC------------CCCCEEEECSEEEECTTSCEEEEEEESSCCT-TCEEE
T ss_pred HHCEEEEEeeeccCCccccCCceEEEEecccccccccccCCCCcceEEEccCCEEEecCCCcEEEEEEeCCCcc-ceEEE
Confidence 9999999999986221 122346777632 233433333 34589999999999998887 79999
Q ss_pred ee--CCEEeeeCCeeEEEEcc-cCcCCCeeEEEEEeCCceeEe---ccceEEEEEeecCCccceeEEEeecc
Q psy14542 132 LK--DGLVLRRNSDEVLVLDR-VQREDAGMYQCHIEDGKYHML---SSGELIIHQVDESDRYRSYQCRGVNK 197 (371)
Q Consensus 132 ~~--~~~~~~~~~~~~~~~~~-~~~~~~g~y~~~~~~~~~~~~---~~~~l~i~~~~~~d~~g~y~C~~~~~ 197 (371)
+| ++..+.. .+.... ...... .++... ....|.|.+++.+| +|.|+|.+.+.
T Consensus 170 ~k~~~g~~~~~----~~~~~~~~~~~~~---------~r~~~~~~~~~~~L~I~~v~~~D-~G~Y~C~a~~~ 227 (247)
T 2ghw_B 170 YQQKPGQAPRP----LIYDASTRATGIP---------DRFSGSGSGTDFTLTISRLEPED-FAVYYCQQRSN 227 (247)
T ss_dssp EEECTTSCCEE----EEETTTEECTTCC---------TTEEEECSSSEEEEEECSCCGGG-CEEEEEEECSS
T ss_pred EEECCCCCcEE----EEEEeccCCCccC---------CCEEEecCCCeEEEEECcCCHHH-CEEEEEEEccC
Confidence 99 4443211 000000 000001 122221 12469999999999 99999999875
No 262
>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*
Probab=99.77 E-value=7.3e-18 Score=135.25 Aligned_cols=188 Identities=16% Similarity=0.193 Sum_probs=114.2
Q ss_pred ceeeecCCcEEEEEEecCCC-CCceEEEeeCC--EEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEec-----cceE
Q psy14542 105 QVVVDVGHRIELHCRVSPKR-LSSAKAWLKDG--LVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLS-----SGEL 176 (371)
Q Consensus 105 ~~~~~~g~~v~l~C~~~~~~-~~~~v~W~~~~--~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~-----~~~l 176 (371)
...+.+|++++|.|.+.+.+ ....+.|++++ .... ..+.+..........+ .....+++.+.. +..|
T Consensus 9 ~~~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~----~~~~~~~~~~~~~~~~-~~~~~~R~~~~~~~~~~~~~L 83 (220)
T 1pz5_B 9 GGLVQPGGSMKLSCVASGFTFSNYWMEWVRQSPEKGLE----WVAEIRLKSNNYATHY-AESVKGRFTISRDDSKSSVYL 83 (220)
T ss_dssp CEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEE----EEEEECCGGGTTCEEE-CGGGTTTEEEEEEGGGTEEEE
T ss_pred CEEEcCCCeEEEEEEEcCCccCCccEEEEEeCCCCCcE----EEEEEEcCCCcccccc-CcccCCcEEEEEeCCCCeEEE
Confidence 34558999999999998765 13799999853 1110 0111110000000000 000012333321 2489
Q ss_pred EEEEeecCCccceeEEEeecccccee-e--eeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecC-CCC
Q psy14542 177 IIHQVDESDRYRSYQCRGVNKLTGAS-L--LSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGN-PLP 252 (371)
Q Consensus 177 ~i~~~~~~d~~g~y~C~~~~~~~~~~-~--~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~ 252 (371)
.|.+++.+| +|.|.|.+.+. .+.. . ... .+.|.... ..+|.+...+.... +..|+.++|.|.+.|. |.|
T Consensus 84 ~I~~v~~~D-~G~Y~C~~~~~-~~~~~~~~~~~---~l~V~~~~-~~~P~i~~~~~~~~-~~~g~~v~L~C~~~g~~P~p 156 (220)
T 1pz5_B 84 QMNNLRAED-TGIYYCTRGGA-VGAMDYWGQGT---SVTVSSAT-TTAPSVYPLVPGCS-DTSGSSVTLGCLVKGYFPEP 156 (220)
T ss_dssp EECSCCGGG-CEEEEEEEECT-TSSEEEECCCE---EEEECSSC-CBCCEEEEECCCSC-CSCSSSEEEEEEEEEEBSSC
T ss_pred EEccCCHHH-CEEEEEEEecC-CcccceECCCE---EEEEccCC-CCCCeEEEcccccc-cCCCCcEEEEEEEEEEeCCC
Confidence 999999999 99999999986 3221 1 222 56665321 13455544333333 6789999999999986 888
Q ss_pred -ceEEEeCCcccc--cCC-----ceEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEE
Q psy14542 253 -TIKWYKQDSPVE--ESD-----RIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLF 305 (371)
Q Consensus 253 -~v~W~~~~~~~~--~~~-----~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 305 (371)
.+.|++++.... ... ......+.|.|..+..+| |.|+|.|.|..|....++.
T Consensus 157 ~~v~W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~~~ 216 (220)
T 1pz5_B 157 VTVKWNYGALSSGVRTVSSVLQSGFYSLSSLVTVPSSTWPS-QTVICNVAHPASKVDLIKE 216 (220)
T ss_dssp CEEEEGGGTCCTTEEECCCEEETTEEEEEEEEEECGGGTTT-SCCEEEEEEGGGTEEEEEE
T ss_pred eEEEEecCCcccceEEcCCcccCCeEEEEEEEEEcchhcCC-ceEEEEEEECCccEeeeec
Confidence 999999887411 000 111234578998888866 9999999999997665543
No 263
>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A
Probab=99.77 E-value=9.3e-18 Score=137.68 Aligned_cols=173 Identities=17% Similarity=0.271 Sum_probs=110.0
Q ss_pred eEEEeCCCcEEEeccCcEEEEEEecCC-CCCCeeEEEeC--CE---EE----------------------ee---CCeeE
Q psy14542 12 SIEMSPSGQVVVDVGHRIELHCRVSPK-RLSSAKAWLKD--GL---VL----------------------RR---NSDEV 60 (371)
Q Consensus 12 ~~~~~p~~~~~~~~G~~v~l~C~~~~~-~~~~~~~W~~~--~~---~~----------------------~~---~~~~~ 60 (371)
.+...|.. +.+.+|++++|.|.+... .+.+.+.|+|. +. .+ .. ....+
T Consensus 3 ~~~~~p~~-~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 81 (253)
T 3uzq_A 3 KLLEQSGA-ELVKPGASVRLSCTASGFNIKDTYMSWVKQRPEQGLEWIGRIDPANGDTKYDPKFQGKATITADTSSNTAY 81 (253)
T ss_dssp CCEEECCC-EEECTTCCEEEEEEECSSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEE
T ss_pred eeEecCCC-eeecCCCcEEEEEEeeCCcccCceEEEEEeCCCCCCEEEEEEccCCCcceeCCcCCCcEEEEeecCCCeEE
Confidence 34556666 889999999999965432 23678999981 11 11 00 03556
Q ss_pred EEEccCCcCCCeEEEEEEEcCCCCe-EEEEEEEEecc--------------eeeEecCCc-eeeecCCcEEEEEEecCCC
Q psy14542 61 LVLDRVQREDAGMYQCHVSADDDSA-QMSAQVILGGE--------------LVEIASSNQ-VVVDVGHRIELHCRVSPKR 124 (371)
Q Consensus 61 l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~v~~~--------------~~~~~~~~~-~~~~~g~~v~l~C~~~~~~ 124 (371)
|.|.+++.+|+|.|.|.+.+..+.. .....|.|... ++.+...+. ..+.+|++++|.|.+.+.+
T Consensus 82 L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~ 161 (253)
T 3uzq_A 82 LHLSSLTSGDTAVYYCSRGWEGFAYWGQGTLVTVSAGGGGSGGGGSGGGGSELVMTQTPASLAVSLGQRATISCRASENV 161 (253)
T ss_dssp EEECSCCGGGCEEEEEEECSSSCCEECCCEEEEECSSSCCCCC---------CCEEEECSEEEECTTSCEEEEEEESSCC
T ss_pred EEeCCCCcccCEEEEEEEeeCCccEECCCcEEEEecCCccccccccCCCcccceEECcCCeEEEeCCCCEEEEEEecCcc
Confidence 9999999999999999999865443 24456666632 344444444 4458999999999999877
Q ss_pred CC---ceEEEeeCC--EEeeeCCeeEEEEccc--CcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeecc
Q psy14542 125 LS---SAKAWLKDG--LVLRRNSDEVLVLDRV--QREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNK 197 (371)
Q Consensus 125 ~~---~~v~W~~~~--~~~~~~~~~~~~~~~~--~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~ 197 (371)
.+ ..+.|++++ ..+. . +..... .....+.|..... .....|.|.+++.+| +|.|.|.+.+.
T Consensus 162 ~~~~~~~v~W~r~~~~~~~~----~-~~~~~~~~~~~~~~r~~~~~~------~~~~~L~I~~v~~~D-sG~Y~C~~~n~ 229 (253)
T 3uzq_A 162 DRYGNSFMHWYQQKAGQPPK----L-LIYRASNLESGIPARFSGSGS------RTDFTLTINPVEADD-VATYFCQRSNE 229 (253)
T ss_dssp EETTEECEEEEEECTTSCCE----E-EEETTTEECTTCCTTEEEEEE------TTEEEEEESSCCGGG-CEEEEEEECSS
T ss_pred ccCCCcEEEEEEECCCCCCE----E-EEEEccccCCccCCceEEeCC------CCEEEEEECCCCHHH-CEEEEEEEccC
Confidence 62 289999842 2111 0 100000 0001111211100 112469999999999 99999999886
No 264
>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}
Probab=99.77 E-value=2.1e-17 Score=135.81 Aligned_cols=176 Identities=16% Similarity=0.264 Sum_probs=110.4
Q ss_pred ccceEEEeCCCcEEEeccCcEEEEEEecCC-CCCCeeEEEeCC--E---EE----------------------e--e-CC
Q psy14542 9 SSLSIEMSPSGQVVVDVGHRIELHCRVSPK-RLSSAKAWLKDG--L---VL----------------------R--R-NS 57 (371)
Q Consensus 9 ~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~-~~~~~~~W~~~~--~---~~----------------------~--~-~~ 57 (371)
+++.+...+.. +.+.+|++++|.|.+... .+.+.+.|+|.. . .+ . . ..
T Consensus 5 ~~~~~~~~~~~-~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~ 83 (256)
T 3juy_B 5 HHQVQLVQSGA-EVKKPGASVKVSCQASGYRFSHFTVHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSAN 83 (256)
T ss_dssp --CCEEEECCC-EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTT
T ss_pred cceEEEEecCC-ceecCCCeEEEEEEeecccccCceEEEEEECCCCCcEEEEEEEcCCCcEeecccCcceEEEEEecCCC
Confidence 34555666666 999999999999976542 356789999731 1 00 0 0 03
Q ss_pred eeEEEEccCCcCCCeEEEEEEEcC------------CCCeEEEEEEEEecc--------------eeeEecCC-ceeeec
Q psy14542 58 DEVLVLDRVQREDAGMYQCHVSAD------------DDSAQMSAQVILGGE--------------LVEIASSN-QVVVDV 110 (371)
Q Consensus 58 ~~~l~i~~~~~~d~G~Y~C~~~~~------------~~~~~~~~~l~v~~~--------------~~~~~~~~-~~~~~~ 110 (371)
..+|.|.+++.+|+|.|.|.+.+. .........|.|... ++.+...+ ...+.+
T Consensus 84 ~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 163 (256)
T 3juy_B 84 TAYMELRSLRSADTAVYYCARVGEWGWDDSPYDNYYMDVWGKGTTVIVSSGGGGSGGGGSGGGGSEIVLTQAPGTLSLSP 163 (256)
T ss_dssp EEEEEECSCCGGGCEEEEEEECCCCCTTCCTTTTCSCCEECCCEEEEECSCC----------CCCCCCEEEECSEEEECT
T ss_pred EEEEEECCCCcccCEEEEEeEEeccccccccccccceeEECCceEEeecCCcccccccccCCCcceeEEEecCCeEEEeC
Confidence 457999999999999999999886 122233456777642 22333333 344589
Q ss_pred CCcEEEEEEecCCCCCceEEEeeC--CEEeeeCCeeEEEEccc--CcCCCeeEEEEEeCCceeEeccceEEEEEeecCCc
Q psy14542 111 GHRIELHCRVSPKRLSSAKAWLKD--GLVLRRNSDEVLVLDRV--QREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDR 186 (371)
Q Consensus 111 g~~v~l~C~~~~~~~~~~v~W~~~--~~~~~~~~~~~~~~~~~--~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~ 186 (371)
|++++|.|.+.+.+..+.+.|++. +..+. . +..... .....+.|...... ....|.|.+++.+|
T Consensus 164 G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~----~-~~~~~~~~~~~~~~r~~~~~~~------~~~~L~I~~v~~~D- 231 (256)
T 3juy_B 164 GERATFSCRSSHSIRSRRVAWYQHKPGQAPR----L-VIHGVSNRASGISDRFSGSGSG------TDFTLTITRVEPED- 231 (256)
T ss_dssp TSCEEEEEEESSCCTTCCEEEEEECTTSCCE----E-EEETTTEECTTCCTTEEEEEET------TEEEEEESSCCGGG-
T ss_pred CCCEEEEEEECCCcCCeeEEEEEECCCCCcE----E-EEEecCccCCccCCcEEEEccC------CEEEEEECCCCHhH-
Confidence 999999999988654479999983 22111 0 100000 00011112111110 12469999999999
Q ss_pred cceeEEEeecc
Q psy14542 187 YRSYQCRGVNK 197 (371)
Q Consensus 187 ~g~y~C~~~~~ 197 (371)
+|.|.|.+.+.
T Consensus 232 sG~Y~C~~~~~ 242 (256)
T 3juy_B 232 FALYYCQVYGA 242 (256)
T ss_dssp CSEEEEEECCS
T ss_pred CEEEEEEEeeC
Confidence 99999999875
No 265
>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...
Probab=99.77 E-value=6.2e-18 Score=134.63 Aligned_cols=182 Identities=14% Similarity=0.203 Sum_probs=113.0
Q ss_pred ceeeecCCcEEEEEEecCCC-CCceEEEeeCC--EEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEec-----cceE
Q psy14542 105 QVVVDVGHRIELHCRVSPKR-LSSAKAWLKDG--LVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLS-----SGEL 176 (371)
Q Consensus 105 ~~~~~~g~~v~l~C~~~~~~-~~~~v~W~~~~--~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~-----~~~l 176 (371)
...+.+|++++|.|.+.+.+ ..+.+.|+|++ .... ..+.... . ....+ .....+++.+.. +..|
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~----~~~~~~~-~--~~~~~-~~~~~~r~~~~~~~~~~~~~L 80 (210)
T 3d9a_H 9 PSLVKPSQTLSLTCSVTGDSITSDYWSWIRKFPGNRLE----YMGYVSY-S--GSTYY-NPSLKSRISITRDTSKNQYYL 80 (210)
T ss_dssp CSEECTTSCEEEEEEEESSCGGGSCEEEEEEETTTEEE----EEEEECT-T--SCEEE-CGGGTTTEEEEEEGGGTEEEE
T ss_pred CEEecCCCcEEEEEEEecccCCCCcEEEEEeCCCCCcE----EEEEEcC-C--CCeEE-CcccCceEEEEecCCCCEEEE
Confidence 34558999999999998764 23789999852 2111 0011100 0 00000 000012333331 2489
Q ss_pred EEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecC-CCC-ce
Q psy14542 177 IIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGN-PLP-TI 254 (371)
Q Consensus 177 ~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~v 254 (371)
.|.+++.+| +|.|.|.+.+. . ...... .+.|.... ..+|.+...+.... +..|+.+.|.|.+.+. |.+ .+
T Consensus 81 ~I~~v~~~D-~G~Y~C~~~~~-~-~~~~~~---~l~V~~~~-~~~P~v~~~~~~~~-~~~g~~v~L~C~~~g~~P~p~~v 152 (210)
T 3d9a_H 81 DLNSVTTED-TATYYCANWDG-D-YWGQGT---LVTVSAAK-TTPPSVYPLAPGSA-AQTNSMVTLGCLVKGYFPEPVTV 152 (210)
T ss_dssp EECSCCGGG-CEEEEEEETTS-S-CBCCCE---EEEECCCC-CBCCEEEEECCTTS-CCCSSEEEEEEEEEEEBSSCCEE
T ss_pred EECCCCccc-CEEEEEEEecC-c-ccccce---EEEeccCC-CCCCEEEEecCCcc-cccCCcEEEEEEEeeEecCCcEE
Confidence 999999999 99999999986 2 111122 55555311 13455544333333 6789999999999986 878 99
Q ss_pred EEEeCCcccccC--Cce-----EEecceEEEeccCCCCCeEEEEEEEcCCCCceeE
Q psy14542 255 KWYKQDSPVEES--DRI-----QRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQ 303 (371)
Q Consensus 255 ~W~~~~~~~~~~--~~~-----~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~ 303 (371)
.|++++..+... ... ....+.|.|..+..+| |.|+|.|.|..|.....
T Consensus 153 ~W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~ 207 (210)
T 3d9a_H 153 TWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVD 207 (210)
T ss_dssp EEGGGTBCTTEEECCCEEETTEEEEEEEEEEEGGGTTT-SCCEEEEEEGGGTEEEE
T ss_pred EEeeCCcccceEEcCCccCCCcEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCcccc
Confidence 999998754211 111 1223568999988877 99999999999876544
No 266
>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L
Probab=99.77 E-value=3.1e-17 Score=136.33 Aligned_cols=189 Identities=16% Similarity=0.218 Sum_probs=112.4
Q ss_pred eeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcc-cCcCCCeeEEEEEeCCceeEec---cceEEEEEee
Q psy14542 107 VVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDR-VQREDAGMYQCHIEDGKYHMLS---SGELIIHQVD 182 (371)
Q Consensus 107 ~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~-~~~~~~g~y~~~~~~~~~~~~~---~~~l~i~~~~ 182 (371)
.+.+|++++|.|.+.+.+. +.+.|++++... .....+.... ...... +++.... ...|.|.+++
T Consensus 23 ~v~~G~~v~L~C~~~~~p~-~~i~W~r~~~~~--~~~~~~~~~~~~~~~~~---------~r~~~~~~~~~~~L~I~~v~ 90 (276)
T 3auv_A 23 SASVGDRVTITCRASQDVS-TAVAWYQQKPGK--APKLLIYSASFLYSGVP---------SRFSGSGSGTDFTLTISSLQ 90 (276)
T ss_dssp ECCTTCCEEEEEEESSCCT-TCEEEEEECTTS--CCEEEEETTTEECTTCC---------TTEEEEEETTEEEEEESSCC
T ss_pred EEcCCCCEEEEeEcCCCCC-CcEEEEEECCCC--CCEEEEEEcCccCCCCC---------CCEEEeccCCeEEEEEccCC
Confidence 4589999999999988876 899999854200 0000000000 000011 2333221 2479999999
Q ss_pred cCCccceeEEEeeccccce-eeeeeccceeeeecchh--------ccccce-eeeeeeeeeeecCCeEEEEEEeecCC--
Q psy14542 183 ESDRYRSYQCRGVNKLTGA-SLLSVNRGRLSLTENKR--------LLSAAK-MFEKHRILNVKKDESVILPCSAQGNP-- 250 (371)
Q Consensus 183 ~~d~~g~y~C~~~~~~~~~-~~~~~~~~~l~v~~~~~--------~~~p~~-~~~~~~~~~~~~g~~~~l~C~~~~~p-- 250 (371)
.+| +|.|.|.+.+. .+. ..... .|.|..... ..+|.+ ...+.... +..|++++|.|.+.+.+
T Consensus 91 ~~D-sG~Y~C~~~n~-~~~~~~~~~---~l~V~~~~~~~~~~~~~~~~p~~~~~~p~~~~-v~~G~~v~L~C~~~g~~~~ 164 (276)
T 3auv_A 91 PED-FATYYCQQHYT-TPPTFGCGT---KVEIKGGGGGSIEGRSGGGGSEVQLVESGGGL-VQPGGSLRLSCAASGFTIS 164 (276)
T ss_dssp GGG-CEEEEEEECSS-SSCCCCCCE---EEEC-----------------CCEEEEECCEE-ECTTCCEEEEEEEESSCGG
T ss_pred hhh-CEEEEEEEecC-CcccccCCE---EEEEecCCCccccccccccCcceEEECCCceE-ecCCCeEEEEEEecCccCC
Confidence 999 99999999986 332 22223 566653211 011222 23334444 89999999999999876
Q ss_pred CCceEEEeCC--ccc-----------------ccCCceEEec------ceEEEeccCCCCCeEEEEEEEcCC---CC--c
Q psy14542 251 LPTIKWYKQD--SPV-----------------EESDRIQRIG------SSLSISHVEESDSGVWNCVANNSE---GQ--D 300 (371)
Q Consensus 251 ~~~v~W~~~~--~~~-----------------~~~~~~~~~~------~~l~i~~~~~~d~G~Y~C~a~n~~---g~--~ 300 (371)
.+.+.|++++ ..+ ....++.... .+|.|.++..+|+|.|+|.|.|.. +. .
T Consensus 165 ~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~~~~~~~~f 244 (276)
T 3auv_A 165 DYWIHWVRQAPGKCLEWVAGITPAGGYTYYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARFVFFLPYAMDYW 244 (276)
T ss_dssp GSEEEEEEECTTCCEEEEEEECGGGCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEECSSTTCSCCCB
T ss_pred CCEEEEEEcCCCCCcEEEEEEeccCCccccccccCCcEEEEecCCCcEEEEEECCCChhHCEEEEEEEEcCcCCcCceEE
Confidence 4889999964 211 0123444321 279999999999999999999983 22 1
Q ss_pred eeEEEEEEecCcc
Q psy14542 301 KMQLFIQYAHGKY 313 (371)
Q Consensus 301 ~~~~~l~v~~~p~ 313 (371)
.....|.|...+.
T Consensus 245 g~gt~l~V~~~~~ 257 (276)
T 3auv_A 245 GQGTLVTVSSASA 257 (276)
T ss_dssp CCCEEEEEC----
T ss_pred CCCEEEEEccccc
Confidence 2335566654443
No 267
>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A
Probab=99.77 E-value=5.9e-18 Score=135.21 Aligned_cols=149 Identities=18% Similarity=0.253 Sum_probs=105.1
Q ss_pred CCCcEEEeccCcEEEEEEecCC------CCCCeeEEEeCCEE------Eee----------------------CCeeEEE
Q psy14542 17 PSGQVVVDVGHRIELHCRVSPK------RLSSAKAWLKDGLV------LRR----------------------NSDEVLV 62 (371)
Q Consensus 17 p~~~~~~~~G~~v~l~C~~~~~------~~~~~~~W~~~~~~------~~~----------------------~~~~~l~ 62 (371)
|.. +.+.+|++++|.|.+... .+.+.+.|+|++.. +.. ..+.+|.
T Consensus 7 p~~-v~v~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~ 85 (214)
T 2zg1_A 7 QKS-VTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCSLS 85 (214)
T ss_dssp CSE-EEEETTCCEEECCEEECCCCCCSCCCCEEEEEEETTCCGGGCCBSEESCTTSCBCTTTTTTEEECSCGGGTBCCEE
T ss_pred CcE-EEEecCccEEEeeeeecCCcccCCCCceEEEEEecCCCCcccceEecCCcccccCccccCceEEeccCCCCeEEEE
Confidence 444 889999999999976533 25678999997642 100 0245799
Q ss_pred EccCCcCCCeEEEEEEEcCCCCe----EEEEEEEEecc--eeeEecCCceeeecCCcEEEEEEecCC----CCCceEEEe
Q psy14542 63 LDRVQREDAGMYQCHVSADDDSA----QMSAQVILGGE--LVEIASSNQVVVDVGHRIELHCRVSPK----RLSSAKAWL 132 (371)
Q Consensus 63 i~~~~~~d~G~Y~C~~~~~~~~~----~~~~~l~v~~~--~~~~~~~~~~~~~~g~~v~l~C~~~~~----~~~~~v~W~ 132 (371)
|.+++.+|+|.|.|.+.+..+.. ...+.|.|... .|.+.... .+.+|+.++|.|.+.+. |. +.+.|+
T Consensus 86 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~~--~~~~G~~v~L~C~~~~~~~~~p~-p~v~W~ 162 (214)
T 2zg1_A 86 IGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHFLE--PLESGRPTRLSCSLPGSCEAGPP-LTFSWT 162 (214)
T ss_dssp ECSCCGGGCEEEEEEEEETTTEEEECCSSCEEEEEECCCCCCEEC--C--CCCTTCCEEEEEECTTCCSCSSC-CEEEEE
T ss_pred EccCCHhhCceEEEEEEcCCCceeeecCCceEEEEecCCCCCceecCc--cccCCCeEEEEEEeccCCCCCCC-ceEEEe
Confidence 99999999999999999865322 13566777632 34443322 25789999999999774 44 899999
Q ss_pred eCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeecc
Q psy14542 133 KDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNK 197 (371)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~ 197 (371)
+++...... .. ...+.|.|..+..+| .|.|+|.|.|.
T Consensus 163 ~~~~~~~~~-------------------------~~--~~~~~L~i~~~~~~~-~g~Y~C~a~n~ 199 (214)
T 2zg1_A 163 GNALSPLDP-------------------------ET--TRSSELTLTPRPEDH-GTNLTCQMKRQ 199 (214)
T ss_dssp SSTTSSSCS-------------------------SC--CCSSEEEECCCTTCC-SCEEEEEEECC
T ss_pred CCCCccCCC-------------------------Cc--eeEEEEEEecccHHc-CcEEEEEEEeC
Confidence 988532111 00 122678999998888 99999999997
No 268
>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Probab=99.77 E-value=1.8e-18 Score=140.27 Aligned_cols=183 Identities=14% Similarity=0.161 Sum_probs=114.0
Q ss_pred ceeeecCCcEEEEEEecCCCCCc-eEEEeeCCEEeeeCCeeEEEEcccC---cCCCeeEEEEEeCCceeEeccceEEEEE
Q psy14542 105 QVVVDVGHRIELHCRVSPKRLSS-AKAWLKDGLVLRRNSDEVLVLDRVQ---REDAGMYQCHIEDGKYHMLSSGELIIHQ 180 (371)
Q Consensus 105 ~~~~~~g~~v~l~C~~~~~~~~~-~v~W~~~~~~~~~~~~~~~~~~~~~---~~~~g~y~~~~~~~~~~~~~~~~l~i~~ 180 (371)
...+.+|++++|.|.+.+.+... .+.|++++... .....+.... ....+.|..... ..+..|.|.+
T Consensus 28 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~----~~~~~~~~~~~~~~~~~~r~~~~~~------~~~~~L~I~~ 97 (234)
T 2j6e_L 28 SASGTPGQRVTISCSGSSSNIGSNYVYWYQQLPGT----APKLLIYRNNQRPSGVPDRFSGSKS------GTSASLAISG 97 (234)
T ss_dssp CCCBCTTCEEEEEEECCTTTTTTSCCEEEEECSSS----CCEEEEBTTTBCCSSSCTTEEEEEE------TTEEEEEEES
T ss_pred cEEeeCCCcEEEEEEecCCCCCCCeEEEEEecCCC----CcEEEEECccccCCCccccEEEEec------CCeEEEEECC
Confidence 33458999999999998764423 79999863200 0001111100 001122211110 1224799999
Q ss_pred eecCCccceeEEEeeccccc---eeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecCCC--CceE
Q psy14542 181 VDESDRYRSYQCRGVNKLTG---ASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPL--PTIK 255 (371)
Q Consensus 181 ~~~~d~~g~y~C~~~~~~~~---~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~--~~v~ 255 (371)
++.+| +|.|+|.+.+. .+ ...... .+.|..... .+|.+...+.... ...|+.++|.|.+.+.++ +.+.
T Consensus 98 v~~~D-~G~Y~C~~~~~-~~~~~~~~~~~---~l~V~~~~~-~~p~v~~~~~~~~-~~~g~~v~L~C~~~g~~p~~~~v~ 170 (234)
T 2j6e_L 98 LRSED-EADYYCATWDD-SLSAVIFGGGT---KLTVLGQPK-AAPSVTLFPPSSE-ELQANKATLVCLISDFFPGAVTVA 170 (234)
T ss_dssp CCSTT-CSEEEEEEEET-TTTEEEECCCB---CCCBCCCCC-CCCCCCEECCCHH-HHTTSCCCEEECCCBCSSCCCEEE
T ss_pred CCHHH-CEEEEEEEEcC-CcceeEecCCE---EEEEecCCC-CCCcccccCCChh-HhcCCceEEEEEEEEEcCCceEEE
Confidence 99999 99999999987 44 121222 555542111 3455554333323 446889999999998543 3899
Q ss_pred EEeCCcccccCCce---E-------EecceEEEeccCCCCCeEEEEEEEcCCCCceeEE
Q psy14542 256 WYKQDSPVEESDRI---Q-------RIGSSLSISHVEESDSGVWNCVANNSEGQDKMQL 304 (371)
Q Consensus 256 W~~~~~~~~~~~~~---~-------~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~ 304 (371)
|+++|..+..+... . ...+.|.|..+..+|+|.|+|.|.|..+....++
T Consensus 171 W~k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~ 229 (234)
T 2j6e_L 171 WKADGAPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTV 229 (234)
T ss_dssp EEETTEECCSSEEECCCCCCTTSCCBCCEEECCCGGGTTTSCCEEEEEEBTTBCCCEEE
T ss_pred EEECCEECCCCccccCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEeCCCceEEec
Confidence 99999887544211 0 1224688999999999999999999988755544
No 269
>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1
Probab=99.77 E-value=2.6e-17 Score=133.90 Aligned_cols=177 Identities=19% Similarity=0.355 Sum_probs=111.7
Q ss_pred ceEEEeCCCcEEEeccCcEEEEEEecCCCC----CCeeEEEeCC--E---EEee------------------CCeeEEEE
Q psy14542 11 LSIEMSPSGQVVVDVGHRIELHCRVSPKRL----SSAKAWLKDG--L---VLRR------------------NSDEVLVL 63 (371)
Q Consensus 11 ~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~----~~~~~W~~~~--~---~~~~------------------~~~~~l~i 63 (371)
+.+...|.. +.+.+|++++|.|.+. +.+ .+.+.|+|++ . .+.. ....+|.|
T Consensus 2 ~~v~~~p~~-~~v~~G~~v~L~C~~~-~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I 79 (240)
T 1moe_A 2 IVLTQSPAS-LAVSLGQRATMSCRAG-ESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLII 79 (240)
T ss_dssp CCEEEECSE-EEECTTSCEEEEEEES-SCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEE
T ss_pred CceEeeCCe-EEecCCCCEEEEEeCC-CccccCCCceEEEEEECCCCCceEEEEEecccCcCCCccEEEEecCCeEEEEE
Confidence 345666766 8899999999999654 444 6789999942 1 1110 03448999
Q ss_pred ccCCcCCCeEEEEEEEcCCCC-eEEEEEEEEecce-----e-eEecCCceeeecCCcEEEEEEecCCCC-CceEEEeeCC
Q psy14542 64 DRVQREDAGMYQCHVSADDDS-AQMSAQVILGGEL-----V-EIASSNQVVVDVGHRIELHCRVSPKRL-SSAKAWLKDG 135 (371)
Q Consensus 64 ~~~~~~d~G~Y~C~~~~~~~~-~~~~~~l~v~~~~-----~-~~~~~~~~~~~~g~~v~l~C~~~~~~~-~~~v~W~~~~ 135 (371)
.+++.+|+|.|+|.+.+..+. ......|.|...+ + .+.......+.+|++++|.|.+.+.+. .+.+.|+++.
T Consensus 80 ~~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~ 159 (240)
T 1moe_A 80 DPVEADDVATYYCQQTNEDPYTFGGGTKLEIKGGGSGGGGEVQLQQSGAELVEPGASVKLSCTASGFNIKDTYMHWVKQR 159 (240)
T ss_dssp SSCCGGGCEEEEEEECSSSSCCBCCCEEEEECCCSCCCCCCCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEEC
T ss_pred cCCChhhCEEEEEEEccCCceeecCCEEEEEecCCCCCCceEEEeCCCceEEeCCCcEEEEEEEcCccCCCCEEEEEEEC
Confidence 999999999999999987554 3344567776321 1 223333445589999999999998764 2699999952
Q ss_pred --EEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEec-----cceEEEEEeecCCccceeEEEeecc
Q psy14542 136 --LVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLS-----SGELIIHQVDESDRYRSYQCRGVNK 197 (371)
Q Consensus 136 --~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~-----~~~l~i~~~~~~d~~g~y~C~~~~~ 197 (371)
..+. ....+... +..........+++.+.. ...|.|.+++.+| +|.|+|.+...
T Consensus 160 ~g~~~~----~~~~~~~~---~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D-~G~Y~C~a~~~ 220 (240)
T 1moe_A 160 PEQGLE----WIGRIDPA---NGNSKYVPKFQGKATITADTSSNTAYLQLTSLTSED-TAVYYCAPFGY 220 (240)
T ss_dssp TTSCCE----EEEEEETT---TTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGG-CEEEEEEECST
T ss_pred CCCCcE----EEEEEccc---CCccccCccccccEEEEEcccCCEEEEEECcCCHHH-CEEEEEEEEec
Confidence 2111 01111000 000000000012333221 2579999999999 99999999853
No 270
>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L
Probab=99.76 E-value=8.4e-18 Score=137.84 Aligned_cols=177 Identities=14% Similarity=0.189 Sum_probs=112.1
Q ss_pred ceeeecCCcEEEEEEecCCCC----CceEEEeeCCEEeeeCCeeEEEEcc--cCcCCCeeEEEEEeCCceeEec---cce
Q psy14542 105 QVVVDVGHRIELHCRVSPKRL----SSAKAWLKDGLVLRRNSDEVLVLDR--VQREDAGMYQCHIEDGKYHMLS---SGE 175 (371)
Q Consensus 105 ~~~~~~g~~v~l~C~~~~~~~----~~~v~W~~~~~~~~~~~~~~~~~~~--~~~~~~g~y~~~~~~~~~~~~~---~~~ 175 (371)
...+.+|++++|.|.+.+.+. .+.+.|+|++... ... .+.... ...... +++.... +..
T Consensus 43 ~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~--~~~-~~~~~~~~~~~~~~---------~r~~~~~~~~~~~ 110 (252)
T 3bkj_L 43 SLPVNLGEQASISCRSSQSIVHSNGHTYLEWYLQRPGQ--SPK-LLIYQVSTRFSGVP---------DRFSGSGSGTDFT 110 (252)
T ss_dssp EEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTS--CCE-EEEETTTEECTTCC---------TTEEEEEETTEEE
T ss_pred eEEEeCCCcEEEEEEcCCCccccCCCCcEEEEEECCCC--CcE-EEEEcCCcccCCcC---------CceEEEccCCEEE
Confidence 334589999999999988761 2799999854200 000 011100 000011 2332221 247
Q ss_pred EEEEEeecCCccceeEEEeeccccce-eeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeec-CCCC-
Q psy14542 176 LIIHQVDESDRYRSYQCRGVNKLTGA-SLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQG-NPLP- 252 (371)
Q Consensus 176 l~i~~~~~~d~~g~y~C~~~~~~~~~-~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~- 252 (371)
|.|.+++.+| +|.|.|.+.+. .+. ..... .+.|... ..+|.+...+.... +..|+.++|.|.+.+ .|.+
T Consensus 111 L~I~~v~~~D-~G~Y~C~~~~~-~~~~~~~~~---~l~V~~~--~~~P~v~~~~~~~~-~~~g~~v~L~C~~~g~~p~~~ 182 (252)
T 3bkj_L 111 LRISRVEAED-LGVYYCFQASL-VPLTFGAGT---KLELKRA--DAAPTVSIFPPSSE-QLTSGGASVVCFLNNFYPKDI 182 (252)
T ss_dssp EEESSCCGGG-CEEEEEEECSB-SSCEECCCE---EEEECCC--CBCCEEEEECCCHH-HHHHTEEEEEEEEEEEBSSCC
T ss_pred EEECCCCccc-CEEEEEEEEcC-CccEECCCE---EEEEeCC--CcCcEEEEeCCChh-hcCCCcEEEEEEEeeEeCCCc
Confidence 9999999999 99999999887 332 11222 4555421 13455554433333 457899999999988 4543
Q ss_pred ceEEEeCCcccccC-Cc---e-------EEecceEEEeccCCCCCeEEEEEEEcCCCCce
Q psy14542 253 TIKWYKQDSPVEES-DR---I-------QRIGSSLSISHVEESDSGVWNCVANNSEGQDK 301 (371)
Q Consensus 253 ~v~W~~~~~~~~~~-~~---~-------~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~ 301 (371)
++.|+++|..+... .. . ....+.|.|..+..+|+|.|+|.|.|......
T Consensus 183 ~v~W~k~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~p 242 (252)
T 3bkj_L 183 NVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSP 242 (252)
T ss_dssp EEEEEETTEEECSSEEEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCSSC
T ss_pred EEEEEECCeecCCCeeeecCcccCCCCCEEEEEEEEEcchhccCCCeEEEEEEeCCCCCC
Confidence 79999999876544 10 0 01123589999999999999999999876643
No 271
>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H
Probab=99.76 E-value=4.9e-17 Score=133.43 Aligned_cols=167 Identities=20% Similarity=0.277 Sum_probs=108.9
Q ss_pred CCCcEEEeccCcEEEEEEecCCCC--CCeeEEEeC--CEEE---ee-------------------------CCeeEEEEc
Q psy14542 17 PSGQVVVDVGHRIELHCRVSPKRL--SSAKAWLKD--GLVL---RR-------------------------NSDEVLVLD 64 (371)
Q Consensus 17 p~~~~~~~~G~~v~l~C~~~~~~~--~~~~~W~~~--~~~~---~~-------------------------~~~~~l~i~ 64 (371)
|.. +.+.+|++++|.|.+. +.+ .+.+.|+|+ +..+ .. ....+|.|.
T Consensus 7 p~~-~~v~~G~~v~L~C~~~-g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~ 84 (256)
T 1nqb_A 7 SGA-ELVKPGASVKLSCKAS-GYTFTSYWMHWVKQRPGRGLEWIGRIDPNSGGTKYNEKFKSKATLTVDKPSSTAYMQLS 84 (256)
T ss_dssp CCC-EEECTTCCEEEEEEEC-SSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred CCC-eeecCCCcEEEEEEec-cccCCCceEEEEEECCCCCcEEEEEEecCCCceeeCcccCCeEEEEEecCCCEEEEEEC
Confidence 444 7899999999999654 433 578999983 2111 00 024689999
Q ss_pred cCCcCCCeEEEEEEEcCCCC-----eEEEEEEEEecceeeEecCCc-eeeecCCcEEEEEEecCCCCC----ceEEEee-
Q psy14542 65 RVQREDAGMYQCHVSADDDS-----AQMSAQVILGGELVEIASSNQ-VVVDVGHRIELHCRVSPKRLS----SAKAWLK- 133 (371)
Q Consensus 65 ~~~~~d~G~Y~C~~~~~~~~-----~~~~~~l~v~~~~~~~~~~~~-~~~~~g~~v~l~C~~~~~~~~----~~v~W~~- 133 (371)
+++.+|+|.|.|.+.+..+. ....+.|.|. .++.+...+. ..+.+|++++|.|.+.+.+.+ +.+.|+|
T Consensus 85 ~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~-~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~ 163 (256)
T 1nqb_A 85 SLTSEDSAVYYCARYDYYGSSYFDYWGQGTTVTVS-SDIELTQTPLSLPVSLGDQASISCRSSQSIVHSNGNTYLEWYLQ 163 (256)
T ss_dssp SCCGGGCEEEEEEECCTTSSSSCSEECCCEEEEEC-CCCCEEEECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEE
T ss_pred cCChhhCEEEEEEEeeccCccceeEEcCceeeeec-ccccEEecCcEEEEecCCcEEEEeEecCcccccccceEEEEEEE
Confidence 99999999999999987552 1234677777 4444544444 345899999999999988763 3999999
Q ss_pred -CCEEeeeCCeeEEEEcc-cCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeecc
Q psy14542 134 -DGLVLRRNSDEVLVLDR-VQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNK 197 (371)
Q Consensus 134 -~~~~~~~~~~~~~~~~~-~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~ 197 (371)
++..+.. .+.... ......+.|.... ......|.|.+++.+| +|.|+|.+.+.
T Consensus 164 ~~g~~~~~----~~~~~~~~~~~~~~r~~~~~------~~~~~~L~I~~v~~~D-sG~Y~C~a~~~ 218 (256)
T 1nqb_A 164 KPGQSPKL----LIYKVSNRFSGVPDRFSGSG------SGTDFTLKISRVEAED-LGVYYCFQGSH 218 (256)
T ss_dssp CTTSCEEE----EEETTTEECTTCCTTEEEEE------ETTEEEEEESSCCGGG-CEEEEEEECSS
T ss_pred CCCCCcEE----EEEEeCCCCCccCCcEEEEc------cCCEEEEEECCCChHH-CEEEEEEEccC
Confidence 4543211 000000 0000011111110 0122579999999999 99999999875
No 272
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A
Probab=99.76 E-value=2.6e-17 Score=127.06 Aligned_cols=144 Identities=14% Similarity=0.168 Sum_probs=102.4
Q ss_pred EEEeccCcEEEEEEecC-CCCCCeeEEEe--CCEEEe----------eC------CeeEEEEccCCcCCCeEEEEEEEcC
Q psy14542 21 VVVDVGHRIELHCRVSP-KRLSSAKAWLK--DGLVLR----------RN------SDEVLVLDRVQREDAGMYQCHVSAD 81 (371)
Q Consensus 21 ~~~~~G~~v~l~C~~~~-~~~~~~~~W~~--~~~~~~----------~~------~~~~l~i~~~~~~d~G~Y~C~~~~~ 81 (371)
+.+.+|++++|.|.... +.+.+.|.|++ ++..+. .. .+++|.|.+++.+|+|.|+|.+.+.
T Consensus 9 v~g~~G~sv~L~~~~~~~~~~~~~i~W~k~~~~~~i~~~~~~~~~~~~~~R~~~~~ngsL~I~~v~~~DsG~Y~c~~~n~ 88 (182)
T 1hnf_A 9 TWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKTDDQDIYKVSIYDT 88 (182)
T ss_dssp EEEETTSCEEECCTTCCCCSSEEEEEEEEGGGCCEEEEECGGGCEEESCTTEEECTTSCEEECSCCGGGCEEEEEEEEET
T ss_pred EEEecCCCEEEeCCcccccCcCCEEEEEECCCCcEEEEEeCccCCCCCCCeEEECCCCCEEECCCChhhCEEEEEEEEeC
Confidence 77899999999994322 34567899999 887662 11 5568999999999999999999988
Q ss_pred CCCeE--EEEEEEEecceeeEecCCceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeE
Q psy14542 82 DDSAQ--MSAQVILGGELVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMY 159 (371)
Q Consensus 82 ~~~~~--~~~~l~v~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y 159 (371)
.+... ..+.|.|.+.. ..|... ..+..+.|.|.+.+.+. +.|.|++++..+...
T Consensus 89 ~g~~~~~~~~~L~V~~~~----~~P~i~-~~~~~v~L~C~~~~~p~-~~~~W~~~g~~l~~~------------------ 144 (182)
T 1hnf_A 89 KGKNVLEKIFDLKIQERV----SKPKIS-WTCINTTLTCEVMNGTD-PELNLYQDGKHLKLS------------------ 144 (182)
T ss_dssp TSCEEEEEEEEEEEECCC----CCCEEE-EETTTTEEEEECSSCSS-CEEEEEESSCEEEEE------------------
T ss_pred CCceeEEEEEEEEEcCcC----CCCEEE-EccCcEEEEeEccCCCC-CEEEEEECCEECCCC------------------
Confidence 77653 56777777321 111111 23447999999998776 899999999877211
Q ss_pred EEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeee
Q psy14542 160 QCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLL 204 (371)
Q Consensus 160 ~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~ 204 (371)
. ..+.+. ....| .|.|+|.|.|. .+....
T Consensus 145 -----~--------~~i~~~-~~~~d-~G~Y~C~a~N~-~~~~~s 173 (182)
T 1hnf_A 145 -----Q--------RVITHK-WTTSL-SAKFKCTAGNK-VSKESS 173 (182)
T ss_dssp -----S--------SCEEEE-CCSCE-EEEEEEEEECS-SCEEEE
T ss_pred -----C--------cEEEEe-cccCC-CcEEEEEEEeC-CCCcEE
Confidence 0 223322 24677 99999999998 554443
No 273
>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A
Probab=99.76 E-value=1.4e-17 Score=135.32 Aligned_cols=178 Identities=20% Similarity=0.289 Sum_probs=109.1
Q ss_pred eeeecCCcEEEEEEecCCCCCceEEEeeC--CEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEe----ccceEEEE
Q psy14542 106 VVVDVGHRIELHCRVSPKRLSSAKAWLKD--GLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHML----SSGELIIH 179 (371)
Q Consensus 106 ~~~~~g~~v~l~C~~~~~~~~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~----~~~~l~i~ 179 (371)
..+.+|++++|.|. .+.+. +.+.|+++ +..+. ..+..........+ ...+++.+. ....|.|.
T Consensus 10 ~~v~~G~~v~L~C~-~~~~~-~~i~W~k~~~~~~~~----~~~~~~~~~~~~~~-----~~~~r~~~~~~~~~~~~L~I~ 78 (238)
T 2p1y_A 10 KVAVTGGKVTLSCN-QTNNH-NNMYWYRQDTGHGLR----LIHYSYGAGSTEKG-----DIPDGYKASRPSQENFSLILE 78 (238)
T ss_dssp EEEETTCCEEEEEE-ECSCC-SEEEEEEEETTTEEE----EEEEESSTTCCEEC-----SSCTTCEEECCSSSBCEEEES
T ss_pred eEEeCCCEEEEEee-cCCCC-ccEEEEEECCCCCcE----EEEEEecCcceeCC-----CccceEEEEccCCceEEEEEe
Confidence 34589999999999 56565 89999985 22111 11111110000000 001233332 13579999
Q ss_pred EeecCCccceeEEEeecccccee--eeeeccceeeeecchhcc-------ccceeeeeeeeeeeecCCeEEEEEEeecCC
Q psy14542 180 QVDESDRYRSYQCRGVNKLTGAS--LLSVNRGRLSLTENKRLL-------SAAKMFEKHRILNVKKDESVILPCSAQGNP 250 (371)
Q Consensus 180 ~~~~~d~~g~y~C~~~~~~~~~~--~~~~~~~~l~v~~~~~~~-------~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p 250 (371)
+++.+| +|.|+|.+.+. .+.. ........+.|....... .+.+...+.... +.+|+.++|.|.+.+.|
T Consensus 79 ~v~~~D-sG~Y~C~~~~~-~g~~~~~~~~~~~~l~V~~~~~~~~p~~~~~~~~v~~~p~~~~-v~~G~~v~L~C~~~~~p 155 (238)
T 2p1y_A 79 LATPSQ-TSVYFCASGDL-GQTNERLFFGHGTKLSVLGSADDAKKDAAKKDGQVRQSPQSLT-VWEGETAILNCSYENSA 155 (238)
T ss_dssp SCCGGG-CEEEEEEEEC-------CEEECCCEEEEEECCCHHHHHHHHHHHTCCEEECSEEE-EETTSCEEEEEECCCTT
T ss_pred cCCccc-CeeEEEEEEeC-CCccccceeCCCeEEEEeccCCCCcCCcccceeeEEccCceEE-EeCCCeEEEEEEEecCC
Confidence 999999 99999999986 3311 010011255665321100 114444455555 89999999999999999
Q ss_pred CCceEEEeCCc--cc------------ccCCceEEe------cceEEEeccCCCCCeEEEEEEEcCC
Q psy14542 251 LPTIKWYKQDS--PV------------EESDRIQRI------GSSLSISHVEESDSGVWNCVANNSE 297 (371)
Q Consensus 251 ~~~v~W~~~~~--~~------------~~~~~~~~~------~~~l~i~~~~~~d~G~Y~C~a~n~~ 297 (371)
.+.+.|++++. .+ ....++... ..+|.|.++..+|+|.|+|.|.|..
T Consensus 156 ~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~ 222 (238)
T 2p1y_A 156 FDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSATYFCAAIDTN 222 (238)
T ss_dssp CCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEETTCCGGGCEEEEEEEEETT
T ss_pred CCcEEEEEECCCCCCEEEEEEccCCCcccCCceEEEecCCCCeEEEEEcCCCHHHCEEEEEEEeeCC
Confidence 99999999642 11 112344432 2479999999999999999999974
No 274
>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H
Probab=99.76 E-value=5.3e-17 Score=130.39 Aligned_cols=192 Identities=14% Similarity=0.187 Sum_probs=114.3
Q ss_pred CceeeecCCcEEEEEEecCCCC-CceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEec-----cceEE
Q psy14542 104 NQVVVDVGHRIELHCRVSPKRL-SSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLS-----SGELI 177 (371)
Q Consensus 104 ~~~~~~~g~~v~l~C~~~~~~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~-----~~~l~ 177 (371)
+...+.+|++++|.|.+.+.+. ...+.|+|..... .....+...... ....+ .....+++.+.. +..|.
T Consensus 8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~--~~~~~~~~~~~~--~~~~~-~~~~~~R~~~~~~~~~~~~sL~ 82 (223)
T 1dee_B 8 GGGVVQPGKSLRLSCAASGFTFSGYGMHWVRQAPGK--GLEWVALISYDE--SNKYY-ADSVKGRFTISRDNSKNTLYLQ 82 (223)
T ss_dssp CCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTS--CEEEEEEECTTS--CCEEE-CTTTBTTEEEEEETTTTEEEEE
T ss_pred CCEEEcCCCcEEEEEEecCcccCCceEEEEEECCCC--CcEEEEEEecCC--Ccccc-CcccCCeEEEEecCCCCEEEEE
Confidence 3445689999999999987642 3689999853100 001111111100 00000 000012443332 25799
Q ss_pred EEEeecCCccceeEEEeeccccc---eeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecC-CCC-
Q psy14542 178 IHQVDESDRYRSYQCRGVNKLTG---ASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGN-PLP- 252 (371)
Q Consensus 178 i~~~~~~d~~g~y~C~~~~~~~~---~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~- 252 (371)
|.+++.+| +|.|.|.+.+. .+ ..........|.|..... .+|.+........ +..|+.++|.|.+.+. |.+
T Consensus 83 I~~v~~~D-~G~Y~C~~~~~-~~~~~~~~~~~~~~~L~V~~~~~-~~P~i~~~~~~~~-~~~g~~v~L~C~~~g~~P~p~ 158 (223)
T 1dee_B 83 MNSLRAED-TAVYYCAKVKF-YDPTAPNDYWGQGTLVTVSSGSA-SAPTLFPLVSCEN-SNPSSTVAVGCLAQDFLPDSI 158 (223)
T ss_dssp ECSCCGGG-CEEEEEEEESS-SSTTCCEEEECCCEEEEECSSCC-BCCEEEEEECTTC-CCSSSEEEEEEEEEEEBSSCC
T ss_pred ECCCCHHH-CEEEEEEEecc-ccCcccceeecCcEEEEEccCCC-CCCEEEEecCCcc-cCCCCcEEEEEEEEEEeCCCe
Confidence 99999999 99999999876 32 110100112566653111 3444443222223 6789999999999886 776
Q ss_pred ceEEEe-CCcccccC--------CceEEecceEEEeccCC--CCCeEEEEEEEcCCCCceeEE
Q psy14542 253 TIKWYK-QDSPVEES--------DRIQRIGSSLSISHVEE--SDSGVWNCVANNSEGQDKMQL 304 (371)
Q Consensus 253 ~v~W~~-~~~~~~~~--------~~~~~~~~~l~i~~~~~--~d~G~Y~C~a~n~~g~~~~~~ 304 (371)
.+.|++ +|..+... .......+.|.|..... +|.|.|+|.|.|..+.....+
T Consensus 159 ~v~W~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~y~C~v~n~~~~~~~~~ 221 (223)
T 1dee_B 159 TFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVAQGTNEHVVCKVQHPNGNKEKDV 221 (223)
T ss_dssp EEEEEETTSCBCSCEEECCCEEETTEEEEEEEEEEECTTTTSTTCCEEEEEEECTTCCEEEEE
T ss_pred EEEeEccCCCccceeEECCccccCCeEEEEEEEEEcHHHhccCCCCEEEEEEEeCCCCCcccc
Confidence 899999 88876531 01111234688877776 789999999999998865543
No 275
>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B
Probab=99.76 E-value=1.8e-17 Score=126.94 Aligned_cols=141 Identities=12% Similarity=0.096 Sum_probs=99.9
Q ss_pred EEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEee-------------------CCeeEEEEccCCcCCCeEEEEEEEcC
Q psy14542 21 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRR-------------------NSDEVLVLDRVQREDAGMYQCHVSAD 81 (371)
Q Consensus 21 ~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~-------------------~~~~~l~i~~~~~~d~G~Y~C~~~~~ 81 (371)
+.+.+|++|+|.|.. . .|.+.+.|++++..+.. ..+++|.|.+++.+|+|.|+|.+.+.
T Consensus 5 v~~~~G~~VtL~c~~-~-~~~~~i~W~~~~~~i~~~~~~~~~~~~~~~~R~~~~~~~~sL~I~~v~~~DsG~Y~C~~~n~ 82 (171)
T 1ccz_A 5 IYGVVYGNVTFHVPS-N-VPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNI 82 (171)
T ss_dssp EEEETTCCEEECCCC-S-SCCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECTTC
T ss_pred EEEEcCCCEEEcCCC-C-CCcceEEEEeCCcEEEEEcCCCcccccccCCcEEEeCCCCeEEECCCChhhCceEEEEEeCC
Confidence 678999999999965 3 37889999998764321 04478999999999999999999887
Q ss_pred CCCeEEEEEEEEecceeeEecCCceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEE
Q psy14542 82 DDSAQMSAQVILGGELVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQC 161 (371)
Q Consensus 82 ~~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~ 161 (371)
.+ ...+.|.|...++ .|...... ....|.|.+.+.+. +.+.|++++..+.....
T Consensus 83 ~~--~~~~~L~V~~~~~----~p~i~~~~-~~~~L~C~~~~~p~-p~i~W~~~~~~l~~~~~------------------ 136 (171)
T 1ccz_A 83 TD--TMKFFLYVLEMVS----KPMIYWEC-SNATLTCEVLEGTD-VELKLYQGKEHLRSLRQ------------------ 136 (171)
T ss_dssp CS--CEEEEEEEECCCC----CCEEEEET-TTTEEEEECSSCSS-CEEEEEETTEEEEEESS------------------
T ss_pred CC--cEEEEEEEECcCC----CCEEEEec-CCcEEEEEeCCCCC-cEEEEEECCEECcCCcc------------------
Confidence 66 6677788873221 11111111 11389999998776 89999999987764311
Q ss_pred EEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeee
Q psy14542 162 HIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLS 205 (371)
Q Consensus 162 ~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~ 205 (371)
..+.+. ..+| .|.|+|.|.|. .+.....
T Consensus 137 ------------~~l~~~--~~~~-~g~Y~C~a~N~-~~~~~~~ 164 (171)
T 1ccz_A 137 ------------KTMSYQ--WTNL-RAPFKCKAVNR-VSQESEM 164 (171)
T ss_dssp ------------SEEEEE--CSCC-SSCEEEEEEET-TEEEEEE
T ss_pred ------------eEEEEe--ccCC-CceEEEEEEcc-cCcccce
Confidence 123222 3567 89999999998 5554433
No 276
>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Probab=99.76 E-value=1e-18 Score=141.65 Aligned_cols=173 Identities=17% Similarity=0.249 Sum_probs=112.2
Q ss_pred cceEEEeCCCcEEEeccCcEEEEEEecCCCCCC-eeEEEeCC--EEE---e------------------eCCeeEEEEcc
Q psy14542 10 SLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSS-AKAWLKDG--LVL---R------------------RNSDEVLVLDR 65 (371)
Q Consensus 10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~-~~~W~~~~--~~~---~------------------~~~~~~l~i~~ 65 (371)
.+.+.. |.. +.+.+|++++|.|.+....+.+ .+.|+|++ ..+ . .....+|.|.+
T Consensus 20 ~~~v~~-p~~-~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~ 97 (234)
T 2j6e_L 20 QSVLTQ-PPS-ASGTPGQRVTISCSGSSSNIGSNYVYWYQQLPGTAPKLLIYRNNQRPSGVPDRFSGSKSGTSASLAISG 97 (234)
T ss_dssp CCCCBC-CSC-CCBCTTCEEEEEEECCTTTTTTSCCEEEEECSSSCCEEEEBTTTBCCSSSCTTEEEEEETTEEEEEEES
T ss_pred ccEEeC-CCc-EEeeCCCcEEEEEEecCCCCCCCeEEEEEecCCCCcEEEEECccccCCCccccEEEEecCCeEEEEECC
Confidence 344444 665 7899999999999665444434 69999852 111 0 01345899999
Q ss_pred CCcCCCeEEEEEEEcCCCC---eEEEEEEEEec---ceeeEecCC-ceeeecCCcEEEEEEecCCCCC-ceEEEeeCCEE
Q psy14542 66 VQREDAGMYQCHVSADDDS---AQMSAQVILGG---ELVEIASSN-QVVVDVGHRIELHCRVSPKRLS-SAKAWLKDGLV 137 (371)
Q Consensus 66 ~~~~d~G~Y~C~~~~~~~~---~~~~~~l~v~~---~~~~~~~~~-~~~~~~g~~v~l~C~~~~~~~~-~~v~W~~~~~~ 137 (371)
++.+|+|.|+|.+.+..+. ....+.|.|.. .+|.+...+ ......|+.++|.|.+.+.+++ +.++|++++..
T Consensus 98 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~ 177 (234)
T 2j6e_L 98 LRSEDEADYYCATWDDSLSAVIFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFFPGAVTVAWKADGAP 177 (234)
T ss_dssp CCSTTCSEEEEEEEETTTTEEEECCCBCCCBCCCCCCCCCCCEECCCHHHHTTSCCCEEECCCBCSSCCCEEEEEETTEE
T ss_pred CCHHHCEEEEEEEEcCCcceeEecCCEEEEEecCCCCCCcccccCCChhHhcCCceEEEEEEEEEcCCceEEEEEECCEE
Confidence 9999999999999987662 12234555531 233333222 2122468899999999886542 59999999998
Q ss_pred eeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccce
Q psy14542 138 LRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGA 201 (371)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~ 201 (371)
+..... .........|.| . ..+.|.|.++..+| .|.|+|.|.|. ...
T Consensus 178 l~~~~~----~~~~~~~~~~~~---------~--~~s~L~i~~~~~~d-~G~Y~C~a~n~-~~~ 224 (234)
T 2j6e_L 178 VKAGVE----TTKPSKQSNNKY---------A--ASSYLSLTPEQWKS-HRSYSCQVTHE-GST 224 (234)
T ss_dssp CCSSEE----ECCCCCCTTSCC---------B--CCEEECCCGGGTTT-SCCEEEEEEBT-TBC
T ss_pred CCCCcc----ccCceECCCCCE---------E--EEEEEEECHHHcCC-CCeEEEEEEeC-CCc
Confidence 754311 111111122211 1 12578899999999 99999999998 444
No 277
>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*
Probab=99.76 E-value=5.9e-17 Score=132.66 Aligned_cols=173 Identities=18% Similarity=0.257 Sum_probs=106.0
Q ss_pred eeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEccc--CcCCCeeEEEEEeCCceeEeccceEEEEEeecC
Q psy14542 107 VVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRV--QREDAGMYQCHIEDGKYHMLSSGELIIHQVDES 184 (371)
Q Consensus 107 ~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~--~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~ 184 (371)
.+.+|+.++|.|.+.+.+. +.+.|++..... ....+..... .....+.|...... .+..|.|.+++.+
T Consensus 15 ~v~~G~~v~L~C~~~~~~~-~~i~W~k~~~~~---~~~~l~~~~~~~~~~~~~r~~~~~~~------~~~~L~I~~v~~~ 84 (250)
T 3esu_F 15 SASLGDRVTISCRASQDIR-NYLNWYQQKPDG---TVKLLIYYTSRLQSGVPSRFSGSGSG------TDYSLTISNLEQE 84 (250)
T ss_dssp EECTTCCEEEEEEESSCCT-TCEEEEEECTTS---CEEEEEETTTEECTTCCTTEEEEEET------TEEEEEESSCCGG
T ss_pred EeeCCCcEEEEEEecccCC-ceEEEEEECCCC---CCEEEEEEeCCCCCCCCCCEEEeCCC------CEEEEEEccCChh
Confidence 3589999999999998887 799999853100 0000111000 01111222111111 1247999999999
Q ss_pred CccceeEEEeeccccce-eeeeeccceeeeecchh--------------ccccceeeeeeeeeeeecCCeEEEEEEeecC
Q psy14542 185 DRYRSYQCRGVNKLTGA-SLLSVNRGRLSLTENKR--------------LLSAAKMFEKHRILNVKKDESVILPCSAQGN 249 (371)
Q Consensus 185 d~~g~y~C~~~~~~~~~-~~~~~~~~~l~v~~~~~--------------~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~ 249 (371)
| +|.|.|.+.+. .+. ..... .+.|..... ..++.....+.... +.+|+.++|.|.+.+.
T Consensus 85 D-~G~Y~C~~~n~-~~~~~~~~~---~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~G~~v~L~C~~~~~ 158 (250)
T 3esu_F 85 D-IGTYFCQQGNT-LPWTFGGGT---KLEIRRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPEL-VKPGASVKISCKDSGY 158 (250)
T ss_dssp G-CEEEEEEECSS-SSCEECCCE---EEEEC------------------------CEECCCEE-ECTTCCEEEEEECCST
T ss_pred h-CEEEEEEEeeC-CCceECCCE---EEEEECCCCcccccccccccccCcccceEEecCCceE-EcCCceEEEEEEecCC
Confidence 9 99999999886 332 22222 556653200 01222333344444 8999999999999887
Q ss_pred C--CCceEEEeC--Cccccc-----------------CCceEEec------ceEEEeccCCCCCeEEEEEEEc
Q psy14542 250 P--LPTIKWYKQ--DSPVEE-----------------SDRIQRIG------SSLSISHVEESDSGVWNCVANN 295 (371)
Q Consensus 250 p--~~~v~W~~~--~~~~~~-----------------~~~~~~~~------~~l~i~~~~~~d~G~Y~C~a~n 295 (371)
+ .+.+.|+++ +..+.. ..++.... .+|.|.++..+|+|.|.|.|.+
T Consensus 159 ~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~ 231 (250)
T 3esu_F 159 AFSSSWMNWVKQRPGQGPEWIGRIYPGDGDTNYNGKFKGKATLTADKSSSTAYMQLSSLTSVDSAVYFCARSG 231 (250)
T ss_dssp TGGGSEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred cccCCEEEEEEECCCCCcEEEEEEeccCCccccCccccceEEEEecCCCCeEEEEECCCCcccCEEEEEEEec
Confidence 6 678999997 443311 13343221 2699999999999999999997
No 278
>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}
Probab=99.76 E-value=9.2e-18 Score=129.77 Aligned_cols=166 Identities=14% Similarity=0.163 Sum_probs=107.4
Q ss_pred eeeecCCcEEEEEEecCCCCCceEEEeeC-CEEeeeCC-eeEEEEcccCcCCCeeEEEEEeCCceeE-eccceEEEEEee
Q psy14542 106 VVVDVGHRIELHCRVSPKRLSSAKAWLKD-GLVLRRNS-DEVLVLDRVQREDAGMYQCHIEDGKYHM-LSSGELIIHQVD 182 (371)
Q Consensus 106 ~~~~~g~~v~l~C~~~~~~~~~~v~W~~~-~~~~~~~~-~~~~~~~~~~~~~~g~y~~~~~~~~~~~-~~~~~l~i~~~~ 182 (371)
..+.+|++++|.|.+......+.+.|++. +..+.... ....... .... .+++.+ ..++.|.|.+++
T Consensus 9 v~v~~G~~vtL~c~~~~~~~~~~i~W~k~~~~~i~~~~~~~~~~~~--~~~~---------~~R~~l~~~~~sL~I~~v~ 77 (180)
T 2dru_A 9 VNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVF--ESVF---------KDRVDLDKTNGALRIYNVS 77 (180)
T ss_dssp EEEETTSCEEECCCSSCCCSCSEEEEESSSSCEEEEECSSSCEEEC--SSTT---------TTTEEECTTTCCEEECSCC
T ss_pred EEEEeCCCEEEeCCCCCCCceeEEEEEecCCeEEEEEECCCCeeEc--chhc---------CCeEEEeCCCccEEEcCCC
Confidence 34489999999999854322379999994 33221100 0000000 0000 135555 456789999999
Q ss_pred cCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEeCCcc
Q psy14542 183 ESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSP 262 (371)
Q Consensus 183 ~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~ 262 (371)
.+| +|.|+|.+.+. . ...... .|.|.++ ...|.+. ..+..+.|.|.+...|.|.+.|++++..
T Consensus 78 ~~D-~G~Y~C~v~~~-~-~~~~~~---~L~V~~~--~~~P~i~---------~~~~~v~L~C~~~~gp~p~i~W~~~~~~ 140 (180)
T 2dru_A 78 KED-RGDYYMRMLHE-T-EDQWKI---TMEVYEM--VSKPMIY---------WECSNATLTCEVLEGTDVELKLYQGKEH 140 (180)
T ss_dssp GGG-CEEEEEEEESS-S-EEEEEE---EEEEECC--CCCCEEE---------EEGGGTEEEEECSSCTTCEEEEEETTEE
T ss_pred HHH-CeEEEEEEEcC-C-eEEEEE---EEEEECC--CCCCEEE---------ecCCCEEEEEEeCCCCCCEEEEEECCeE
Confidence 999 99999999876 3 334444 6666632 1223322 2345699999993338999999999987
Q ss_pred cccCCceEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEE
Q psy14542 263 VEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFI 306 (371)
Q Consensus 263 ~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 306 (371)
+. ...+.+|.+.. .+|+|.|+|.|.|..+.......+
T Consensus 141 l~-----~~~~~~l~~~~--~~d~g~Y~C~a~N~~~~~~~~~~i 177 (180)
T 2dru_A 141 LR-----SLRQKTMSYQW--TNLRAPFKCKAVNRVSQESEMEVV 177 (180)
T ss_dssp EE-----EESSSEEEEEC--SCCSSCEEEEEEETTEEEEEEECC
T ss_pred Cc-----CCCCCEEEEEE--hhcCccEEEEEecCcCccccceeE
Confidence 75 12345666643 789999999999999887665543
No 279
>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A
Probab=99.76 E-value=7.9e-18 Score=155.05 Aligned_cols=165 Identities=19% Similarity=0.335 Sum_probs=119.8
Q ss_pred EEEeccCcEEEEEEecCCCCCCeeEEEeCCEEE--------------eeC----CeeEEEEccCCcCCCeEEEEEEEcCC
Q psy14542 21 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVL--------------RRN----SDEVLVLDRVQREDAGMYQCHVSADD 82 (371)
Q Consensus 21 ~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~--------------~~~----~~~~l~i~~~~~~d~G~Y~C~~~~~~ 82 (371)
..+.+|++++|.|....+.|.+.+.|+|++..+ ... .+++|.|.+++.+|+|.|+|.+.+..
T Consensus 376 ~~~~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~i~~v~~~D~G~Y~C~~~n~~ 455 (581)
T 3o3u_N 376 ITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEAWKVLSPQGGGPWDSVARVLPNGSLFLPAVGIQDEGIFRCQAMNRN 455 (581)
T ss_dssp EEEETTSCEEECCTTCCSSSSCEEEEEEEETTSSSCEECCSCCSSGGGGTSEECTTSCEEESSCCGGGCEEEEEEEECTT
T ss_pred cceecCCcEEEeeeecCCCCCceEEEEEcCCeeEEEEecccCCCCCcCCcEEEcCCceEEEeccccccCeEEEEEEEcCC
Confidence 678999999999965467788899999975411 000 44589999999999999999999988
Q ss_pred CCe-EEEEEEEEecc--eeeEecCCceeeecCCc-EEEEEEecCC-CCCceEEEeeCCEEeeeCCeeEEEEcccCcC-CC
Q psy14542 83 DSA-QMSAQVILGGE--LVEIASSNQVVVDVGHR-IELHCRVSPK-RLSSAKAWLKDGLVLRRNSDEVLVLDRVQRE-DA 156 (371)
Q Consensus 83 ~~~-~~~~~l~v~~~--~~~~~~~~~~~~~~g~~-v~l~C~~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~-~~ 156 (371)
+.. ...+.|.|... .|.+...... +..|+. +.|.|.+.+. |. +.++|++++..+................ +.
T Consensus 456 ~~~~~~~~~l~V~~~~~~p~i~~~~~~-~~~~~~~~~l~C~~~~~~P~-~~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~ 533 (581)
T 3o3u_N 456 GKETKSNYRVRVYQIPGKPEIVDSASE-LTAGVPNKVGTCVSEGSYPA-GTLSWHLDGKPLVPNEKGVSVKEQTRRHPET 533 (581)
T ss_dssp SCEEEEEEEEEEEBCCCCCEEESCCSE-ECTTSCEEEEEEEEEEEBSC-CEEEEEETTEECCTTSTTEEEEEEEEECTTT
T ss_pred CceeEEEEEEEEEcCCCCCEEEcCCcc-cccCCceeEEEEECCCCCCC-CeEEEEECCEECCCCCCeEEEEeeeEEcCCC
Confidence 877 67788888732 3334433333 444544 5679999884 65 8999999999987654433333333322 67
Q ss_pred eeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccc
Q psy14542 157 GMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKL 198 (371)
Q Consensus 157 g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~ 198 (371)
|.|++. +.|.|..++..|+.|.|+|.+.|..
T Consensus 534 g~y~~~-----------s~L~i~~~~~~d~~~~y~C~~~n~~ 564 (581)
T 3o3u_N 534 GLFTLQ-----------SELMVTPARGGDPRPTFSCSFSPGL 564 (581)
T ss_dssp CCEEEE-----------EEEEECCCTTSCSCCCEEEEEECSS
T ss_pred ceEEEE-----------EEEEEEeccccCCCceEEEEEeccC
Confidence 777652 6799999885554899999999983
No 280
>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1
Probab=99.76 E-value=8.3e-17 Score=134.12 Aligned_cols=199 Identities=17% Similarity=0.215 Sum_probs=117.5
Q ss_pred CCceeeecCCcEEEEEEecCCC-CCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEec-----cceE
Q psy14542 103 SNQVVVDVGHRIELHCRVSPKR-LSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLS-----SGEL 176 (371)
Q Consensus 103 ~~~~~~~~g~~v~l~C~~~~~~-~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~-----~~~l 176 (371)
+....+.+|++++|.|.+.+.+ ..+.+.|++++... ............ . .........+++.+.. ...|
T Consensus 33 p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~--~~~~l~~~~~~~--~-~~~~~~~~~~R~~~~~~~~~~~~sL 107 (282)
T 1qok_A 33 SGAELVRSGTSVKLSCTASGFNIKDSYMHWLRQGPEQ--GLEWIGWIDPEN--G-DTEYAPKFQGKATFTTDTSSNTAYL 107 (282)
T ss_dssp CCCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTC--CEEEEEEEETTT--T-EEEECGGGBTTEEEEEETTTTEEEE
T ss_pred CCCEEEeCCCeEEEEEeccCCCCCCceEEEEEeCCCC--CcEEEEEEecCC--C-ccccCchhcCcEEEEEecCCCeEEE
Confidence 3344558999999999998765 23789999954100 000001110000 0 0000000012333322 2579
Q ss_pred EEEEeecCCccceeEEEeeccccce--eeeeeccceeeeecchh----------ccccceeeeeeeeeeeecCCeEEEEE
Q psy14542 177 IIHQVDESDRYRSYQCRGVNKLTGA--SLLSVNRGRLSLTENKR----------LLSAAKMFEKHRILNVKKDESVILPC 244 (371)
Q Consensus 177 ~i~~~~~~d~~g~y~C~~~~~~~~~--~~~~~~~~~l~v~~~~~----------~~~p~~~~~~~~~~~~~~g~~~~l~C 244 (371)
.|.+++.+| +|.|.|.+.+. .+. .........|.|..... ..++.+...+.... +.+|++++|.|
T Consensus 108 ~I~~v~~~D-sG~Y~C~~~n~-~g~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-v~~G~~v~L~C 184 (282)
T 1qok_A 108 QLSSLTSED-TAVYYCNEGTP-TGPYYFDYWGQGTTVTVSSGGGGSGGGGSGGGGSENVLTQSPAIMS-ASPGEKVTITC 184 (282)
T ss_dssp EECSCCGGG-CEEEEEEEECS-SSSCCCEEECCCEEEEEEC---------------CCCEEEECSEEE-ECTTCCEEEEE
T ss_pred EECcCChhh-CEEEEEEeccC-CCccceeeeCCCEEEEEecCCcccCCccCCCCccceEEecCCCEEE-EcCCCcEEEEE
Confidence 999999999 99999999987 431 11100112566663211 01233444444555 89999999999
Q ss_pred EeecCCCCceEEEe--CCcccc------------cCCceEE----ecceEEEeccCCCCCeEEEEEEEcCCCC-ceeEEE
Q psy14542 245 SAQGNPLPTIKWYK--QDSPVE------------ESDRIQR----IGSSLSISHVEESDSGVWNCVANNSEGQ-DKMQLF 305 (371)
Q Consensus 245 ~~~~~p~~~v~W~~--~~~~~~------------~~~~~~~----~~~~l~i~~~~~~d~G~Y~C~a~n~~g~-~~~~~~ 305 (371)
.+.+.+ +.+.|++ ++..+. ...++.. ...+|.|.++..+|+|.|+|.|.|..+. ......
T Consensus 185 ~~~~~~-~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt~ 263 (282)
T 1qok_A 185 SASSSV-SYMHWFQQKPGTSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISRMEAEDAATYYCQQRSSYPLTFGAGTK 263 (282)
T ss_dssp EESSCC-SCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEE
T ss_pred EecCCC-ceEEEEEECCCCCcEEEEEEecCCCCcccCCeEEecCCCEEEEEEccCChhHCEEEEEEEeeCCCceEeCCEE
Confidence 999988 8999999 555441 1234432 1247999999999999999999986432 223355
Q ss_pred EEEec
Q psy14542 306 IQYAH 310 (371)
Q Consensus 306 l~v~~ 310 (371)
|.|..
T Consensus 264 l~V~~ 268 (282)
T 1qok_A 264 LELKR 268 (282)
T ss_dssp EEEC-
T ss_pred EEEec
Confidence 66654
No 281
>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2
Probab=99.76 E-value=1.4e-18 Score=138.71 Aligned_cols=165 Identities=16% Similarity=0.258 Sum_probs=110.5
Q ss_pred CCCcEEEeccCcEEEEEEecCCCCCCeeEEEeC--CEEEe---------------------eCCeeEEEEccCCcCCCeE
Q psy14542 17 PSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKD--GLVLR---------------------RNSDEVLVLDRVQREDAGM 73 (371)
Q Consensus 17 p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~--~~~~~---------------------~~~~~~l~i~~~~~~d~G~ 73 (371)
|.. +.+.+|++++|.|. ..+.+.+.+.|+|+ +..+. .....+|.|.+++.+|+|.
T Consensus 6 p~~-~~v~~G~~v~L~C~-~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~ 83 (212)
T 1nfd_E 6 PSS-ASVTVGETVKITCS-GDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDEAA 83 (212)
T ss_dssp CSE-EEEETTSCCCEEEE-ETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCSE
T ss_pred CCe-EEEeCCCcEEEEEe-cCCCCCCeEEEEEECCCCCcEEEEEeccccCCCccccEEEEeeCCEEEEEECcCCcccCEE
Confidence 555 78999999999996 45556677999984 22221 0144589999999999999
Q ss_pred EEEEEEcCCCCe---EEEEEEEEec---ceeeEecCCc-eeeecCCcEEEEEEecCCCC-CceEEEeeCCEEeeeCCeeE
Q psy14542 74 YQCHVSADDDSA---QMSAQVILGG---ELVEIASSNQ-VVVDVGHRIELHCRVSPKRL-SSAKAWLKDGLVLRRNSDEV 145 (371)
Q Consensus 74 Y~C~~~~~~~~~---~~~~~l~v~~---~~~~~~~~~~-~~~~~g~~v~l~C~~~~~~~-~~~v~W~~~~~~~~~~~~~~ 145 (371)
|+|.+.+..+.. .....|.|.. .+|.+...+. ....+|+.++|.|.+.+.++ .+.++|++++..+.......
T Consensus 84 Y~C~~~n~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~ 163 (212)
T 1nfd_E 84 YYCLSSYGDNNDLVFGSGTQLTVLRGPKSSPKVTVFPPSPEELRTNKATLVCLVNDFYPGSATVTWKANGATINDGVKTT 163 (212)
T ss_dssp EEEEEEETTTTEEEECCCEEEEEECCCCBCCEEECCCCCHHHHHTTEECCCEEEEEEBSSCCEEEEEETTEEECSSCBCC
T ss_pred EEEEEEcccCcccccCCceEEEEccCCCCCCEEEeeCCchHhccCCceEEEEEEEeeECCccEEEEEECCeEcCCCeecC
Confidence 999999632211 1224455531 3455544332 22357999999999988743 37999999999876542100
Q ss_pred EEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccce
Q psy14542 146 LVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGA 201 (371)
Q Consensus 146 ~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~ 201 (371)
.......| | . ..+.|.|.++..+| .|.|+|.|.|. .+.
T Consensus 164 ----~~~~~~~~-~---------~--~~s~L~i~~~~~~d-~G~Y~C~a~n~-~~~ 201 (212)
T 1nfd_E 164 ----KPSKQGQN-Y---------M--TSSYLSLTADQWKS-HNRVSCQVTHE-GET 201 (212)
T ss_dssp ----CCBCSSSC-E---------E--EEEBCCEEHHHHHT-CSCEEEEEECT-TTT
T ss_pred ----CceecCCC-c---------e--EEEEEEEchhhcCC-CCeEEEEEEeC-Cce
Confidence 00111111 2 1 12679999999999 99999999998 443
No 282
>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}
Probab=99.76 E-value=3.5e-18 Score=136.78 Aligned_cols=166 Identities=13% Similarity=0.204 Sum_probs=107.9
Q ss_pred eecCCcEEEEEEecCCC---CCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecC
Q psy14542 108 VDVGHRIELHCRVSPKR---LSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDES 184 (371)
Q Consensus 108 ~~~g~~v~l~C~~~~~~---~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~ 184 (371)
+.+|++++|.|.+.+.+ ..+.++|+|++..+....... . .....| ++.. .+.|.|.+++.+
T Consensus 23 v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~--~---~~~~~~---------~~~~--~~~L~I~~~~~~ 86 (218)
T 2rgs_A 23 LMISLTPKVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQT--H---REDYNS---------TIRV--VSTLPIQHQDWM 86 (218)
T ss_dssp HCTTSCCEEEEEEEEECTTSCCEEEEEEETTEEECCCEEEE--E---EETTTT---------EEEE--EEEEECCHHHHH
T ss_pred hccCCCeeEEEEEcCCccCCCceEEEEEECCccccCccccc--c---cccCCC---------eEEE--EEEEEEcHHHcC
Confidence 57899999999998763 237999999997765321110 0 001112 2221 257999999999
Q ss_pred CccceeEEEeecccccee--eeeecccee--eeecchhccccceeeeeeeeeeeecCCeEEEEEEeec-CCCC-ceEEEe
Q psy14542 185 DRYRSYQCRGVNKLTGAS--LLSVNRGRL--SLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQG-NPLP-TIKWYK 258 (371)
Q Consensus 185 d~~g~y~C~~~~~~~~~~--~~~~~~~~l--~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~v~W~~ 258 (371)
| .|.|+|.+.+. .+.. ...+ .+ .+. .+|.+...+.... ...|+.+.|.|.+.| +|.+ .++|++
T Consensus 87 D-~g~Y~C~~~~~-~~~~~~~~~v---~~~~~~~-----~~P~v~~~~~~~~-~~~g~~~~L~C~~~g~~P~~~~v~W~k 155 (218)
T 2rgs_A 87 S-GKEFKCKVNNK-DLPSPIERTI---SKIKGLV-----RAPQVYILPPPAE-QLSRKDVSLTCLVVGFNPGDISVEWTS 155 (218)
T ss_dssp T-TCCEEEEEEET-TCSSCEEEEE---CCCCCCC-----BCCEEEEECCCGG-GTTSSEEEEEEEEEEEBSSCCEEEEEE
T ss_pred C-CCeEEEEEECC-cCCCcceEEE---eecCCCC-----CCCEEEEECCChH-HhcCCceEEEEEEEeeeCCCcEEEEEE
Confidence 9 99999999987 4432 1111 11 222 5666655444333 335999999999998 6765 899999
Q ss_pred CCcccccCCc--eE-Eecc------eEEEeccCCCCCeEEEEEEEcCCCCc
Q psy14542 259 QDSPVEESDR--IQ-RIGS------SLSISHVEESDSGVWNCVANNSEGQD 300 (371)
Q Consensus 259 ~~~~~~~~~~--~~-~~~~------~l~i~~~~~~d~G~Y~C~a~n~~g~~ 300 (371)
+|..+..... .. ..++ .|.|.....+|.|.|+|.|.|.....
T Consensus 156 ~g~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~d~g~YtC~a~n~~l~~ 206 (218)
T 2rgs_A 156 NGHTEENYKDTAPVLDSDGSYFIYSKLNMKTSKWEKTDSFSCNVRHEGLKN 206 (218)
T ss_dssp TTEEECCEEECCCEECTTSCEEEEEEEEEEHHHHHHCSCEEEEEECTTSGG
T ss_pred CCEeccCceecccEECCCCCEEEEEEEEECHHHcCCCCeEEEEEEcCCCCC
Confidence 9987643221 11 1222 35555555567999999999987653
No 283
>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B
Probab=99.76 E-value=5.5e-18 Score=129.86 Aligned_cols=161 Identities=16% Similarity=0.163 Sum_probs=107.4
Q ss_pred eecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEe-ccceEEEEEeecCCc
Q psy14542 108 VDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHML-SSGELIIHQVDESDR 186 (371)
Q Consensus 108 ~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~-~~~~l~i~~~~~~d~ 186 (371)
..+|++++|.|.+.. +. +.+.|++++..+........... +.| .++..+. .+++|.|.+++..|
T Consensus 7 ~~~G~~VtL~c~~~~-~~-~~i~W~~~~~~i~~~~~~~~~~~-------~~~-----~~R~~~~~~~~sL~I~~v~~~D- 71 (171)
T 1ccz_A 7 GVVYGNVTFHVPSNV-PL-KEVLWKKQKDKVAELENSEFRAF-------SSF-----KNRVYLDTVSGSLTIYNLTSSD- 71 (171)
T ss_dssp EETTCCEEECCCCSS-CC-SCEEEEETTEEEEEEETTEEEEC-------GGG-----TTSEEECTTTCCEEECSCCGGG-
T ss_pred EEcCCCEEEcCCCCC-Cc-ceEEEEeCCcEEEEEcCCCcccc-------ccc-----CCcEEEeCCCCeEEECCCChhh-
Confidence 478999999999854 54 89999998875432110000000 000 2233332 45789999999999
Q ss_pred cceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccC
Q psy14542 187 YRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEES 266 (371)
Q Consensus 187 ~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~ 266 (371)
+|.|.|.+.+. .+ ...+ .|.|..+. ..|.+.... . ...|.|.+.+.|.|++.|++++..+...
T Consensus 72 sG~Y~C~~~n~-~~--~~~~---~L~V~~~~--~~p~i~~~~--------~-~~~L~C~~~~~p~p~i~W~~~~~~l~~~ 134 (171)
T 1ccz_A 72 EDEYEMESPNI-TD--TMKF---FLYVLEMV--SKPMIYWEC--------S-NATLTCEVLEGTDVELKLYQGKEHLRSL 134 (171)
T ss_dssp CEEEEEECTTC-CS--CEEE---EEEEECCC--CCCEEEEET--------T-TTEEEEECSSCSSCEEEEEETTEEEEEE
T ss_pred CceEEEEEeCC-CC--cEEE---EEEEECcC--CCCEEEEec--------C-CcEEEEEeCCCCCcEEEEEECCEECcCC
Confidence 99999999987 55 3444 66666321 223332111 1 1379999999899999999999877643
Q ss_pred CceEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEE
Q psy14542 267 DRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQ 307 (371)
Q Consensus 267 ~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~ 307 (371)
. ...|.+. ...|+|.|+|.|.|..+....++.|.
T Consensus 135 ~-----~~~l~~~--~~~~~g~Y~C~a~N~~~~~~~~~~l~ 168 (171)
T 1ccz_A 135 R-----QKTMSYQ--WTNLRAPFKCKAVNRVSQESEMEVVN 168 (171)
T ss_dssp S-----SSEEEEE--CSCCSSCEEEEEEETTEEEEEEECCC
T ss_pred c-----ceEEEEe--ccCCCceEEEEEEcccCcccceeEEe
Confidence 2 2334443 37789999999999999887766553
No 284
>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H
Probab=99.76 E-value=1.2e-17 Score=133.80 Aligned_cols=164 Identities=13% Similarity=0.252 Sum_probs=106.1
Q ss_pred CCCcEEEeccCcEEEEEEecCCC-CCCeeEEEeC--CEEEe------------------e----------CCeeEEEEcc
Q psy14542 17 PSGQVVVDVGHRIELHCRVSPKR-LSSAKAWLKD--GLVLR------------------R----------NSDEVLVLDR 65 (371)
Q Consensus 17 p~~~~~~~~G~~v~l~C~~~~~~-~~~~~~W~~~--~~~~~------------------~----------~~~~~l~i~~ 65 (371)
|.. +.+.+|++++|.|.+.... +.+.+.|+|+ +..+. . ....+|.|.+
T Consensus 7 p~~-~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~ 85 (219)
T 1c1e_H 7 SGP-ELKKPGETVKISCKASGYMFTNYGMNWVKQAPGKALKLMGWINPYTGESTFADDFKGRFAFFLETSATTAYLQINN 85 (219)
T ss_dssp CCC-EEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECSSSCCEEECGGGCSSEEEEEEGGGTEEEEEECS
T ss_pred CCC-eEecCCCcEEEEEEEeCcccccceEEEEEeCCCCCcEEEEEEecCCCceEeCcccCCcEEEEEecCCCEEEEEECC
Confidence 444 7899999999999665332 3678999986 32211 0 0246899999
Q ss_pred CCcCCCeEEEEEEEcCCCCe----EEEEEEEEecc---eeeEec-CCceeeecCCcEEEEEEecC-CCCCceEEEeeCCE
Q psy14542 66 VQREDAGMYQCHVSADDDSA----QMSAQVILGGE---LVEIAS-SNQVVVDVGHRIELHCRVSP-KRLSSAKAWLKDGL 136 (371)
Q Consensus 66 ~~~~d~G~Y~C~~~~~~~~~----~~~~~l~v~~~---~~~~~~-~~~~~~~~g~~v~l~C~~~~-~~~~~~v~W~~~~~ 136 (371)
++.+|+|.|+|.+.+..+.. ...+.|.|... +|.+.. .+...+.+|+.++|.|.+.+ .|.+..+.|++++.
T Consensus 86 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~ 165 (219)
T 1c1e_H 86 LKNEDMATYFCARGTTIVRAMDYWGQGTSLTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSL 165 (219)
T ss_dssp CCGGGCEEEEEEEEETTTTEEEEECCCEEEEECCCCCBCCEEEEECCCSSSCCSSEEEEEEEEEEEBSSCCEEEEGGGTB
T ss_pred CCcccCEEEEEEEeccCcccceeecCceEEEEecCCCCCCeEEEecCccccccCCeEEEEEEcccccCCCeEEEEEeCCc
Confidence 99999999999999875321 13456676632 233332 22333468999999999998 66623999999987
Q ss_pred EeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeecccccee
Q psy14542 137 VLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGAS 202 (371)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~ 202 (371)
.+..... .... ..| .+.. .+.|.| .....| .|.|+|.|.|. .+..
T Consensus 166 ~~~~~~~-----~~~~--~~~---------~~~~--~s~L~i-~~~~~d-~g~Y~C~a~n~-~~~~ 210 (219)
T 1c1e_H 166 SSGVHTF-----PAVL--QSD---------LYTL--SSSVTV-PSSPRP-SETVTCNVAHP-ASST 210 (219)
T ss_dssp CTTEEEC-----CCEE--SSS---------CEEE--EEEEEE-ESSSTT-TSCCEEEEEEG-GGTE
T ss_pred ccceEec-----CCcc--cCC---------eEEE--EEEEEE-ecccCC-CCEEEEEEEeC-CCCc
Confidence 5321100 0000 012 2211 256888 555557 79999999998 5543
No 285
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative splicing, cell adhesion, cell membrane, glycoprotein, HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3uro_R 3epc_R* 3epd_R* 3epf_R*
Probab=99.75 E-value=4.2e-19 Score=142.63 Aligned_cols=159 Identities=16% Similarity=0.191 Sum_probs=109.2
Q ss_pred EEEeccCcEEEEEEecCCCCCC----eeEEEeCCEEE---------------------e------eCCeeEEEEccCCcC
Q psy14542 21 VVVDVGHRIELHCRVSPKRLSS----AKAWLKDGLVL---------------------R------RNSDEVLVLDRVQRE 69 (371)
Q Consensus 21 ~~~~~G~~v~l~C~~~~~~~~~----~~~W~~~~~~~---------------------~------~~~~~~l~i~~~~~~ 69 (371)
+.+.+|++++|.|.+..+.+.+ .+.|+|++... . ...+.+|.|.+++.+
T Consensus 9 v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~I~~v~~~ 88 (221)
T 3eow_R 9 VPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRDASLRMFGLRVE 88 (221)
T ss_dssp CCCCCSSCCEEECCCCCCSSSCCCEEEEEECBSSSCSSCCCEEESSSEEECSCSSCEEESSCSSCCCCCCEEECCCSSCC
T ss_pred EEEEeCCCEEEEeeeccCCCCCccceEEEEEeCCCCceEEEEECCCCCCcCCCCcEEEecccCCCCCCCceEEEccCChH
Confidence 6788999999999664444433 39999985311 0 003568999999999
Q ss_pred CCeEEEEEEEcCC-CCeEEEEEEEEecceeeEecCCceeeecCCcE-EEEEEec-CCCCCceEEEeeCCEEeeeCCeeEE
Q psy14542 70 DAGMYQCHVSADD-DSAQMSAQVILGGELVEIASSNQVVVDVGHRI-ELHCRVS-PKRLSSAKAWLKDGLVLRRNSDEVL 146 (371)
Q Consensus 70 d~G~Y~C~~~~~~-~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~v-~l~C~~~-~~~~~~~v~W~~~~~~~~~~~~~~~ 146 (371)
|+|.|+|.+.+.. +.....+.|.|. .+|.+...+.....+|+.+ .|.|.+. +.|. +.++|++++........
T Consensus 89 D~G~Y~C~~~~~~~~~~~~~~~L~V~-~~P~~~~~~~~~~~~g~~~~~l~C~~~~g~P~-p~v~W~k~~~~~~~~~~--- 163 (221)
T 3eow_R 89 DEGSYTCLFVTFPQGSRSVDIWLRVL-AKPQNTAEVQKVQLTGEPVPMARCVSTGGRPP-AQITWHSDLGGMPQTSQ--- 163 (221)
T ss_dssp CCSCBEEEEEESSSCSCEEECCCCCC-CCCEEEEEEECCCCCSSSCCEEEEEEESCSSC-CCEEEECSSSCCCCCEE---
T ss_pred HCeEEEEEEEeCCCCceEEEEEEEEE-ECCCceeecCCcccCCceEEEEEEECCCccCC-CeeEEEeCCCCCCccce---
Confidence 9999999999866 667788888888 4555543322222678888 4999987 5566 79999986443221100
Q ss_pred EEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccce
Q psy14542 147 VLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGA 201 (371)
Q Consensus 147 ~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~ 201 (371)
...... +.+.. .+.|.|.++..+| .|.|+|.+.|. .+.
T Consensus 164 ----~~~~~~---------~~~~~--~s~L~i~~~~~~d-~g~ytC~a~n~-~~~ 201 (221)
T 3eow_R 164 ----VPGFLS---------GTVTV--TSLWILVPSSQVD-GKQVTCKVEHE-SFE 201 (221)
T ss_dssp ----ECCCCB---------TTBCC--EEEEECCCCSCCC-CCCEEEEECCS-CSS
T ss_pred ----eecCCC---------CcEEE--EEEEEEeCCHHHC-CCeEEEEEECC-CCC
Confidence 000111 12221 2579999999999 99999999998 443
No 286
>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}
Probab=99.75 E-value=1.1e-17 Score=137.41 Aligned_cols=180 Identities=19% Similarity=0.244 Sum_probs=110.5
Q ss_pred eeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEe-----ccceEEEEE
Q psy14542 106 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHML-----SSGELIIHQ 180 (371)
Q Consensus 106 ~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~-----~~~~l~i~~ 180 (371)
..+.+|++++|.|.+.+.+. +.+.|++.... ............. . .....+++.+. ....|.|.+
T Consensus 13 ~~v~~G~~v~L~C~~~~~~~-~~v~W~r~~~~--~~~~~~~~~~~~~--~-----~~~~~~r~~~~~~~~~~~~sL~I~~ 82 (256)
T 3tf7_C 13 VTVSEGASLQLRCKYSYSAT-PYLFWYVQYPR--QGPQMLLKYYSGD--P-----VVQGVNGFEAEFSKSDSSFHLRKAS 82 (256)
T ss_dssp EEEETTSCEEECCEEECSSC-CEEEEEEECTT--SCCEEEEEECSSC--S-----EEECSTTCEEEEETTTTEEEEEESS
T ss_pred EEecCCCeEEEEEEeCCCCC-ceEEEEEECCC--CCeEEEEEEccCC--c-----ccccCCCeEEEEcCCCCEEEEEECC
Confidence 34589999999999988766 89999983210 0001111110000 0 00012233331 235799999
Q ss_pred eecCCccceeEEEeeccccc-eeeeeeccceeeeecc---------------hhccccceeeeeeeeeeeecCCeEEEEE
Q psy14542 181 VDESDRYRSYQCRGVNKLTG-ASLLSVNRGRLSLTEN---------------KRLLSAAKMFEKHRILNVKKDESVILPC 244 (371)
Q Consensus 181 ~~~~d~~g~y~C~~~~~~~~-~~~~~~~~~~l~v~~~---------------~~~~~p~~~~~~~~~~~~~~g~~~~l~C 244 (371)
++.+| +|.|.|.+.+. .+ ..........|.|... ....+|.+...+.... +.+|+.++|.|
T Consensus 83 v~~~D-sG~Y~C~~~~~-~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~-v~~G~~v~L~C 159 (256)
T 3tf7_C 83 VHRSD-SAVYFCAVSAK-GTGSKLSFGKGAKLTVSPGGGGSGGGGSGGGGSGGGGSEAAVTQSPRNKV-TVTGENVTLSC 159 (256)
T ss_dssp CCGGG-CSEEEEEEECT-TCTTCEEECCCEEEEEEC---------------------CCEEESCSEEE-EETTCCEEECE
T ss_pred CCccc-CEEEEEEEecC-CCccceEECCCeEEEEeCCCCCcCCCCcCcccCCCCcCccEEEecCCEEE-EeCCCcEEEEE
Confidence 99999 99999999886 32 1111111125666531 0123555666666655 88999999999
Q ss_pred EeecCCCCceEEEeCCc--ccc---------------cCCceEE-----ecceEEEeccCCCCCeEEEEEEEcCCCC
Q psy14542 245 SAQGNPLPTIKWYKQDS--PVE---------------ESDRIQR-----IGSSLSISHVEESDSGVWNCVANNSEGQ 299 (371)
Q Consensus 245 ~~~~~p~~~v~W~~~~~--~~~---------------~~~~~~~-----~~~~l~i~~~~~~d~G~Y~C~a~n~~g~ 299 (371)
.+.+. .+.+.|++... .+. ...++.. ...+|.|.++..+|+|.|+|.|.|..|.
T Consensus 160 ~~~~~-~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~ 235 (256)
T 3tf7_C 160 RQTNS-HNYMYWYRQDTGHELRLIYYSYGAGNLQIGDVPDGYKATRTTQEDFFLTLESASPSQTSLYFCASSDAPGQ 235 (256)
T ss_dssp EECSC-CSEEEEEEECTTSCEEEEEEEESTTCCEECSCCTTCEEECCSSSBCEEEESSCCGGGCEEEEEEEEEETTE
T ss_pred EcCCC-ceEEEEEEECCCCCeEEEEEEcCCCceecCccCCceEEEeCCCCeEEEEECCCCHHHCEEEEEEecCCCCc
Confidence 99876 67899998432 110 0122221 2247999999999999999999998764
No 287
>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D
Probab=99.75 E-value=5e-17 Score=133.54 Aligned_cols=163 Identities=19% Similarity=0.340 Sum_probs=105.0
Q ss_pred EEEeccCcEEEEEEecCCCC--CCeeEEEeC--CE---EEe-------------------------eCCeeEEEEccCCc
Q psy14542 21 VVVDVGHRIELHCRVSPKRL--SSAKAWLKD--GL---VLR-------------------------RNSDEVLVLDRVQR 68 (371)
Q Consensus 21 ~~~~~G~~v~l~C~~~~~~~--~~~~~W~~~--~~---~~~-------------------------~~~~~~l~i~~~~~ 68 (371)
..+.+|++++|.|.+. +.+ .+.+.|+|. +. .+. .....+|.|.+++.
T Consensus 12 ~~v~~G~~v~L~C~~~-~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~ 90 (256)
T 3umt_A 12 ELVKPGASVKISCKTS-GYTFTEYTMHWVKQSHGKSLEWIGGINPNNGGTSYNQKFKGKAILTVDKSSSTAYLELRSLTS 90 (256)
T ss_dssp EEECTTCCEEEEEEEE-SSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred eEEcCCCCEEEEEEEe-cccccccEEEEEEECCCCCcEEEEEEeccCCcccccccccceEEEEEecCCCEEEEEECCCCc
Confidence 6799999999999754 333 578999973 11 110 00345699999999
Q ss_pred CCCeEEEEEEEcCC----CCeEEEEEEEEecc---------------eeeEecCCc-eeeecCCcEEEEEEecCCCCCce
Q psy14542 69 EDAGMYQCHVSADD----DSAQMSAQVILGGE---------------LVEIASSNQ-VVVDVGHRIELHCRVSPKRLSSA 128 (371)
Q Consensus 69 ~d~G~Y~C~~~~~~----~~~~~~~~l~v~~~---------------~~~~~~~~~-~~~~~g~~v~l~C~~~~~~~~~~ 128 (371)
+|+|.|.|.+.+.. +.......|.|... ++.+...+. ..+.+|++++|.|.+.+.+. +.
T Consensus 91 ~DsG~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~-~~ 169 (256)
T 3umt_A 91 EDSAVYYCARDDRYPAWFAYWGQGTTVTVSSGGGGSGGGGSGGGGSTDIQLTQSPSSLSASLGERVSITCRASQDIG-SN 169 (256)
T ss_dssp GGCEEEEEEECCSTTCCSCEECCCEEEEECC---------------CCCCEEEECSEEEECTTCCEEEEEEESSCCT-TC
T ss_pred ccCEEEEEEEccCCCccccEECCCEEEEEcCCCccccCcccCCCCccccEEEcCCCeEEEECCCCEEEEEEEecCCC-cE
Confidence 99999999998762 22233466777632 444555444 44589999999999998777 69
Q ss_pred EEEeeCC--EEeeeCCeeEEEEccc--CcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeecc
Q psy14542 129 KAWLKDG--LVLRRNSDEVLVLDRV--QREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNK 197 (371)
Q Consensus 129 v~W~~~~--~~~~~~~~~~~~~~~~--~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~ 197 (371)
+.|+|.. ..+. . +..... .....+.|..... .....|.|.+++.+| +|.|.|.+.+.
T Consensus 170 v~W~k~~~~~~~~----~-~~~~~~~~~~~~~~r~~~~~~------~~~~~L~I~~v~~~D-~G~Y~C~~~~~ 230 (256)
T 3umt_A 170 LNWLQQKPDGTIK----R-LIYATSSLDSGVPKRFSGSRS------GSDYSLTISSLESED-FVDYYCLQYAS 230 (256)
T ss_dssp EEEEEECTTCCEE----E-EEETTTEECTTSCTTEEEEEE------TTEEEEEECSCCGGG-CSEEEEEECSS
T ss_pred EEEEEECCCCCcE----E-EEEeccccCCccCCCEEEecC------CCEEEEEECCCChhH-CEEEEEEEeeC
Confidence 9999842 1111 0 000000 0001111211110 112469999999999 99999999885
No 288
>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A
Probab=99.75 E-value=4.6e-17 Score=133.84 Aligned_cols=175 Identities=20% Similarity=0.298 Sum_probs=108.3
Q ss_pred eEEEeCCCcEEEeccCcEEEEEEecCC-CCCCeeEEEeCC----EEEe-------------------------eCCeeEE
Q psy14542 12 SIEMSPSGQVVVDVGHRIELHCRVSPK-RLSSAKAWLKDG----LVLR-------------------------RNSDEVL 61 (371)
Q Consensus 12 ~~~~~p~~~~~~~~G~~v~l~C~~~~~-~~~~~~~W~~~~----~~~~-------------------------~~~~~~l 61 (371)
.+.+..+.+..+.+|++++|.|.+... .+.+.+.|+|.. .... .....+|
T Consensus 9 ~v~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L 88 (257)
T 3gkz_A 9 EVQLQESGPSLVKPSQTLSLTCSVTGDSVTSGYWSWIRQFPGNKLDYMGYISYRGSTYYNPSLKSRISITRDTSKNQVYL 88 (257)
T ss_dssp CEEEEEECCSEECTTCCEEEEEEEEESCCSSCEEEEEEECTTSCEEEEEEEETTCCEEECTTTTTTEEEEEEGGGTEEEE
T ss_pred cEEEECCCCeEEcCCCcEEEEEEEEcccccceEEEEEEECCCCCcEEEEEEecCCcEEecccccccEEEEEecCCceEEE
Confidence 333333333679999999999976542 356789999821 1111 0034579
Q ss_pred EEccCCcCCCeEEEEEEEcCCCC----eEEEEEEEEecc-------------eeeEecCCc-eeeecCCcEEEEEEecCC
Q psy14542 62 VLDRVQREDAGMYQCHVSADDDS----AQMSAQVILGGE-------------LVEIASSNQ-VVVDVGHRIELHCRVSPK 123 (371)
Q Consensus 62 ~i~~~~~~d~G~Y~C~~~~~~~~----~~~~~~l~v~~~-------------~~~~~~~~~-~~~~~g~~v~l~C~~~~~ 123 (371)
.|.+++.+|+|.|.|.+.+..+. ......|.|... ++.+...+. ..+.+|++++|.|.+.+.
T Consensus 89 ~I~~v~~~DsG~Y~C~~~n~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~ 168 (257)
T 3gkz_A 89 QLKSVSSEDTATYYCSYFDSDDYAMEYWGQGTSVTVSGGGGSGGGGSGGGGSQIVLTQSPAIMSASPGEKVTLTCSASSS 168 (257)
T ss_dssp EECSCCGGGCEEEEEEEECTTCTTCEEECCCEEEEEC---------CTTCCCCCCEECSCSEEEECTTCCEEEEEEESSC
T ss_pred EECCCChhhCEEEEEEEecCCCcceeEEcCCEEEeecCchhhcccccCCCccceEEEcCCceEEEeCCCcEEEEEEEccC
Confidence 99999999999999999986221 123456777633 244555554 445899999999999987
Q ss_pred CCCceEEEeeCC--EEeeeCCeeEEEEcc-cCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeecc
Q psy14542 124 RLSSAKAWLKDG--LVLRRNSDEVLVLDR-VQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNK 197 (371)
Q Consensus 124 ~~~~~v~W~~~~--~~~~~~~~~~~~~~~-~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~ 197 (371)
+.+..+.|++.. ..+. ..+.... ......+.|..... .....|.|.+++.+| +|.|.|.+.+.
T Consensus 169 ~~~~~v~W~k~~~~~~~~----~~~~~~~~~~~~~~~r~~~~~~------~~~~~L~I~~v~~~D-~G~Y~C~~~~~ 234 (257)
T 3gkz_A 169 VSSSHLYWYQQKPGSSPK----LWIYSTSNLASGVPARFSGSGS------GTSYSLTISSMEAED-AASYFCHQWSS 234 (257)
T ss_dssp CCGGGEEEEEECTTSCCE----EEEETTTEECTTCCTTEEEEEE------TTEEEEEESSCCGGG-CEEEEEEECSS
T ss_pred ccceEEEEEEECCCCCcE----EEEEEccccCCCcCCCEEEecC------CCEEEEEECCCChHH-CEEEEEEEccC
Confidence 763389999842 2111 0000000 00000111211100 012469999999999 99999999875
No 289
>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}
Probab=99.75 E-value=7.7e-17 Score=132.44 Aligned_cols=172 Identities=20% Similarity=0.339 Sum_probs=107.4
Q ss_pred CCCcEEEeccCcEEEEEEecCCC-CCCeeEEEeCC-----EEEee------------------CCeeEEEEccCCcCCCe
Q psy14542 17 PSGQVVVDVGHRIELHCRVSPKR-LSSAKAWLKDG-----LVLRR------------------NSDEVLVLDRVQREDAG 72 (371)
Q Consensus 17 p~~~~~~~~G~~v~l~C~~~~~~-~~~~~~W~~~~-----~~~~~------------------~~~~~l~i~~~~~~d~G 72 (371)
|.. +.+.+|++++|.|.+.... +.+.+.|+|++ ..+.. ....+|.|.+++.+|+|
T Consensus 9 p~~-~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG 87 (256)
T 3ux9_B 9 PPS-VSGAPGQRVTISCSGSSSNIGSNYVSWYQQLPGTAPKLLIYDNNQRPSGVPDRFSGSKSGTSASLAITGLQSEDEA 87 (256)
T ss_dssp CSE-EEECTTCCEEEEEECCTTTTTTSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGCE
T ss_pred CCc-EEEcCCCcEEEEEecCCCCCCCceEEEEEECCCCCCEEEEEecCCCCCCcCCcEEEEccCCEEEEEECCCChhhCE
Confidence 444 7899999999999665432 67789999831 11110 03458999999999999
Q ss_pred EEEEEEEcCCCCe---EEEEEEEEecce--------------------eeEecCCceeeecCCcEEEEEEecCCCC-Cce
Q psy14542 73 MYQCHVSADDDSA---QMSAQVILGGEL--------------------VEIASSNQVVVDVGHRIELHCRVSPKRL-SSA 128 (371)
Q Consensus 73 ~Y~C~~~~~~~~~---~~~~~l~v~~~~--------------------~~~~~~~~~~~~~g~~v~l~C~~~~~~~-~~~ 128 (371)
.|.|.+.+..+.. .....|.|...+ +.+...+...+.+|++++|.|.+.+.+. .+.
T Consensus 88 ~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~ 167 (256)
T 3ux9_B 88 DYYCQVRDNNENEWVFGGGTKLTVLGSGGSTITSYNVYYTKLSSSGSEVQLVESGGGLVQPGGSLRLSCAASGFTFSSYA 167 (256)
T ss_dssp EEEEEEEETTTTEEEECCCEEEEEC----------------------CCEEEEECCEEECTTCCEEEEEEEESSCGGGSE
T ss_pred EEEEEEEECCCCceEECCCEEEEEECCCCCcCccceeEEeecCCCccceeEEcCCCeEEcCCCeEEEEEEEeCCcccccE
Confidence 9999999865432 233566666322 1344444455689999999999987652 379
Q ss_pred EEEeeCC--EEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEec-----cceEEEEEeecCCccceeEEEeecc
Q psy14542 129 KAWLKDG--LVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLS-----SGELIIHQVDESDRYRSYQCRGVNK 197 (371)
Q Consensus 129 v~W~~~~--~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~-----~~~l~i~~~~~~d~~g~y~C~~~~~ 197 (371)
+.|+++. ..+. ....+.... ...+......+++.+.. ...|.|.+++.+| +|.|+|.+.+.
T Consensus 168 v~W~r~~~~~~~~----~~~~~~~~~---~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D-sG~Y~C~~~~~ 235 (256)
T 3ux9_B 168 MSWVRQAPGKGLE----WVSAISGSG---GSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAED-TAVYYCARYID 235 (256)
T ss_dssp EEEEEECTTCCEE----EEEEECSSS---SCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGG-CEEEEEEEEET
T ss_pred EEEEEECCCCCcE----EEEEEccCC---CceecCccccceEEEEecCCCCEEEEEECCCChhh-CEEEEEEEEcC
Confidence 9999862 2211 111111100 00000000012333221 2359999999999 99999999986
No 290
>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1
Probab=99.75 E-value=9.6e-17 Score=131.90 Aligned_cols=165 Identities=19% Similarity=0.302 Sum_probs=105.4
Q ss_pred EEEeccCcEEEEEEecCCC-CCCeeEEEeC--C---EEEe--------------e----------CCeeEEEEccCCcCC
Q psy14542 21 VVVDVGHRIELHCRVSPKR-LSSAKAWLKD--G---LVLR--------------R----------NSDEVLVLDRVQRED 70 (371)
Q Consensus 21 ~~~~~G~~v~l~C~~~~~~-~~~~~~W~~~--~---~~~~--------------~----------~~~~~l~i~~~~~~d 70 (371)
..+.+|++++|.|.+.... +.+.+.|+|+ + ..+. . ....+|.|.+++.+|
T Consensus 10 ~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D 89 (257)
T 1f3r_B 10 GLVRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSLQTDD 89 (257)
T ss_dssp SEECTTSEEEEEEEEESSCTTTSCCEEEEEETTSCCEEEEEECSSSCEEECSSSSTTEEEEEETTTTEEEEEEESCCTTC
T ss_pred ccccCCceEEEEEEEecccCCCccEEEEEeCCCCCcEEEEEEecCCceeeCcccCCcEEEEEECCCCEEEEEECCCCccc
Confidence 5799999999999765332 3678999984 2 1110 0 134589999999999
Q ss_pred CeEEEEEEEcCCC------Ce---EEEEEEEEecce--------------eeEecCCce-eeecCCcEEEEEEecCCCCC
Q psy14542 71 AGMYQCHVSADDD------SA---QMSAQVILGGEL--------------VEIASSNQV-VVDVGHRIELHCRVSPKRLS 126 (371)
Q Consensus 71 ~G~Y~C~~~~~~~------~~---~~~~~l~v~~~~--------------~~~~~~~~~-~~~~g~~v~l~C~~~~~~~~ 126 (371)
+|.|.|.+.+..| .. .....|.|...+ +.+...+.. .+.+|++++|.|.+.+.+.
T Consensus 90 sG~Y~C~a~n~~g~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~- 168 (257)
T 1f3r_B 90 TGTYYCTRDLYGGYPLGFWYFDFWGPGTMVTVSSGGGGSGGGGSGGGGSDIKLTQSPSLLSASVGDRVTLSCKGSQNIN- 168 (257)
T ss_dssp CEEEEEEEESSSSCCSSCCCEEEECCCEEEEECSSCCSSCCSSSCCCCCEECSCEETSEECCCTTCCEEEEEECSSCCB-
T ss_pred CEEEEEEEcccccCccccccccccCCceEEEEEeCCccccccccCCCccceEEEccCCEEEEcCCCCEEEEEEECCcCC-
Confidence 9999999998743 11 123567776321 223333333 3489999999999998877
Q ss_pred ceEEEee--CCEEeeeCCeeEEEEcc-cCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeecc
Q psy14542 127 SAKAWLK--DGLVLRRNSDEVLVLDR-VQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNK 197 (371)
Q Consensus 127 ~~v~W~~--~~~~~~~~~~~~~~~~~-~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~ 197 (371)
+.+.|++ ++..+.. .+.... ......+.|.... ......|.|.+++.+| +|.|.|.+.|.
T Consensus 169 ~~v~W~k~~~g~~~~~----~~~~~~~~~~~~~~r~~~~~------~~~~~~L~I~~v~~~D-~G~Y~C~a~n~ 231 (257)
T 1f3r_B 169 NYLAWYQQKLGEAPKL----LIYNTNSLQTGIPSRFSGSG------SGTDYTLTISSLQPED-VATYFCYQYNN 231 (257)
T ss_dssp TCEEEEEECTTSCCEE----EEETTTEECTTCCTTEEEEE------EBTEEEEEECSCCGGG-CSEEEEEEESS
T ss_pred CcEEEEEECCCCCcEE----EEEEccCCCCCcCCCEEEec------CCCEEEEEECCCChhh-CEEEEEEEeCC
Confidence 7999999 4442211 000000 0000011111110 0112479999999999 99999999987
No 291
>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E
Probab=99.75 E-value=1.5e-17 Score=135.85 Aligned_cols=182 Identities=13% Similarity=0.200 Sum_probs=110.8
Q ss_pred eeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEc--ccCcCCCeeEEEEEeCCceeEe----ccceEEEE
Q psy14542 106 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLD--RVQREDAGMYQCHIEDGKYHML----SSGELIIH 179 (371)
Q Consensus 106 ~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~--~~~~~~~g~y~~~~~~~~~~~~----~~~~l~i~ 179 (371)
..+.+|+.++|.|.+.+.+. +.+.|+|.... ......+... +-.....+.| .+++.+. .+..|.|.
T Consensus 11 ~~v~~G~~v~L~C~~~~~~~-~~v~W~r~~~~--~~~~~~~~~~~~~~~~~~~~~~-----~~r~~~~~~~~~~~~L~I~ 82 (246)
T 4dzb_B 11 VISKSGTSVKIECRSLDFQA-TTMFWYRQFPK--QSLMLMATSNEGSKATYEQGVE-----KDKFLINHASLTLSTLTVT 82 (246)
T ss_dssp EEEETTSCEEEEEEESSSCC-CSEEEEEECTT--SCCEEEEEECTTSCCEECTTCC-----GGGEEEEEEETTEEEEEEC
T ss_pred EEEeCCCcEEEEeEecCCCc-eEEEEEEECCC--CCcEEEEEEccCCCceecCccc-----CCcEEEEecCCCEEEEEEC
Confidence 34589999999999988776 89999983210 0001111111 0000000000 1233322 13579999
Q ss_pred EeecCCccceeEEEeeccccc----eeeeeeccceeeeecch-hccccceeee-eeeeeeeecCCeEEEEEEeecCCCC-
Q psy14542 180 QVDESDRYRSYQCRGVNKLTG----ASLLSVNRGRLSLTENK-RLLSAAKMFE-KHRILNVKKDESVILPCSAQGNPLP- 252 (371)
Q Consensus 180 ~~~~~d~~g~y~C~~~~~~~~----~~~~~~~~~~l~v~~~~-~~~~p~~~~~-~~~~~~~~~g~~~~l~C~~~~~p~~- 252 (371)
+++.+| +|.|.|.+.+. .+ ...... .+.|.... ...+|.+... +.... +..|+.++|.|.+.|.+++
T Consensus 83 ~v~~~D-~G~Y~C~~~~~-~~~~~~~~~~~~---~l~V~~~~~~~~~P~i~~~~~~~~~-~~~g~~v~L~C~~~g~~p~~ 156 (246)
T 4dzb_B 83 SAHPED-SSFYICSARTS-GDFGEQFFGPGT---RLTVLEDLKNVFPPEVAVFEPSEAE-ISHTQKATLVCLATGFYPDH 156 (246)
T ss_dssp SCCGGG-CEEEEEEECCS-SGGGCCEECCCE---EEEEESCGGGCBCCEEEEECCCHHH-HHHHSEEEEEEEEEEEBSSC
T ss_pred CCCHHH-CEEEEEEEecC-CCCcceEEcCCE---EEEEecCCCcccCCceEeecCCchh-ccCCCcEEEEEEEccCcCCc
Confidence 999999 99999999865 22 111222 55555311 1134444332 22223 5669999999999986654
Q ss_pred -ceEEEeCCcccccCCceE---------------EecceEEEeccCCCC-CeEEEEEEEcCCCCce
Q psy14542 253 -TIKWYKQDSPVEESDRIQ---------------RIGSSLSISHVEESD-SGVWNCVANNSEGQDK 301 (371)
Q Consensus 253 -~v~W~~~~~~~~~~~~~~---------------~~~~~l~i~~~~~~d-~G~Y~C~a~n~~g~~~ 301 (371)
.+.|+++|..+....+.. ...+.|.|.....+| +|.|+|+|.|......
T Consensus 157 ~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~g~YtC~v~~~~~~~~ 222 (246)
T 4dzb_B 157 VELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLSEN 222 (246)
T ss_dssp EEEEEEETTEEECTTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBCTT
T ss_pred eEEEEEECCEECCCCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCeEEEEEEecCCCCc
Confidence 899999998776532211 112348888888888 9999999999876654
No 292
>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A
Probab=99.75 E-value=8.6e-17 Score=132.22 Aligned_cols=199 Identities=16% Similarity=0.170 Sum_probs=115.8
Q ss_pred CceeeecCCcEEEEEEecCCC-CCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEec-----cceEE
Q psy14542 104 NQVVVDVGHRIELHCRVSPKR-LSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLS-----SGELI 177 (371)
Q Consensus 104 ~~~~~~~g~~v~l~C~~~~~~-~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~-----~~~l~ 177 (371)
+...+.+|++++|.|.+.+.+ ....+.|++.... ......+.+... ....+ .....+++.+.. ...|.
T Consensus 16 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~--~~~~~~~~~~~~---~~~~~-~~~~~~r~~~~~~~~~~~~~L~ 89 (257)
T 3gkz_A 16 GPSLVKPSQTLSLTCSVTGDSVTSGYWSWIRQFPG--NKLDYMGYISYR---GSTYY-NPSLKSRISITRDTSKNQVYLQ 89 (257)
T ss_dssp CCSEECTTCCEEEEEEEEESCCSSCEEEEEEECTT--SCEEEEEEEETT---CCEEE-CTTTTTTEEEEEEGGGTEEEEE
T ss_pred CCeEEcCCCcEEEEEEEEcccccceEEEEEEECCC--CCcEEEEEEecC---CcEEe-cccccccEEEEEecCCceEEEE
Confidence 344568999999999998743 2379999984210 000011111100 00000 000012333332 23699
Q ss_pred EEEeecCCccceeEEEeeccc---cceeeeeeccceeeeecchh---------ccccceeeeeeeeeeeecCCeEEEEEE
Q psy14542 178 IHQVDESDRYRSYQCRGVNKL---TGASLLSVNRGRLSLTENKR---------LLSAAKMFEKHRILNVKKDESVILPCS 245 (371)
Q Consensus 178 i~~~~~~d~~g~y~C~~~~~~---~~~~~~~~~~~~l~v~~~~~---------~~~p~~~~~~~~~~~~~~g~~~~l~C~ 245 (371)
|.+++.+| +|.|.|.+.+.. ........ .|.|..... ..++.+...+.... +.+|++++|.|.
T Consensus 90 I~~v~~~D-sG~Y~C~~~n~~~~~~~~~~~~~---~l~V~~~~~~~~~~~~~~~~~~~~~~~p~~~~-v~~G~~v~L~C~ 164 (257)
T 3gkz_A 90 LKSVSSED-TATYYCSYFDSDDYAMEYWGQGT---SVTVSGGGGSGGGGSGGGGSQIVLTQSPAIMS-ASPGEKVTLTCS 164 (257)
T ss_dssp ECSCCGGG-CEEEEEEEECTTCTTCEEECCCE---EEEEC---------CTTCCCCCCEECSCSEEE-ECTTCCEEEEEE
T ss_pred ECCCChhh-CEEEEEEEecCCCcceeEEcCCE---EEeecCchhhcccccCCCccceEEEcCCceEE-EeCCCcEEEEEE
Confidence 99999999 999999998851 11111222 566653210 11344555555555 899999999999
Q ss_pred eecCCCC-ceEEEeC--Cccccc------------CCceEEe----cceEEEeccCCCCCeEEEEEEEcCCCCc-eeEEE
Q psy14542 246 AQGNPLP-TIKWYKQ--DSPVEE------------SDRIQRI----GSSLSISHVEESDSGVWNCVANNSEGQD-KMQLF 305 (371)
Q Consensus 246 ~~~~p~~-~v~W~~~--~~~~~~------------~~~~~~~----~~~l~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~ 305 (371)
+.+.+.+ .+.|++. +..+.. ..++... ..+|.|.++..+|+|.|.|.|.+..... ..-..
T Consensus 165 ~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~fg~gt~ 244 (257)
T 3gkz_A 165 ASSSVSSSHLYWYQQKPGSSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISSMEAEDAASYFCHQWSSFPFTFGSGTK 244 (257)
T ss_dssp ESSCCCGGGEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEE
T ss_pred EccCccceEEEEEEECCCCCcEEEEEEccccCCCcCCCEEEecCCCEEEEEECCCChHHCEEEEEEEccCCceEEcCCEE
Confidence 9988877 8999984 322210 1333321 2359999999999999999998855432 22244
Q ss_pred EEEecCcc
Q psy14542 306 IQYAHGKY 313 (371)
Q Consensus 306 l~v~~~p~ 313 (371)
|.|...+.
T Consensus 245 l~v~~~~~ 252 (257)
T 3gkz_A 245 LEIKRAPH 252 (257)
T ss_dssp EEECCC--
T ss_pred EEEEeCCC
Confidence 66655444
No 293
>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*
Probab=99.75 E-value=3.2e-17 Score=133.49 Aligned_cols=176 Identities=18% Similarity=0.296 Sum_probs=110.9
Q ss_pred ceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCC-----EEEe------------------eCCeeEEEEccCC
Q psy14542 11 LSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDG-----LVLR------------------RNSDEVLVLDRVQ 67 (371)
Q Consensus 11 ~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~-----~~~~------------------~~~~~~l~i~~~~ 67 (371)
+.+...|.. +.+.+|++++|.|.+ .+.+.+.+.|+|++ ..+. .....+|.|.+++
T Consensus 2 ~~v~~~p~~-~~v~~G~~v~L~C~~-~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~ 79 (242)
T 2znx_A 2 IVLTQSPAT-LSVTPGNSVSLSCRA-SQSIGNNLHXYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVE 79 (242)
T ss_dssp CCEEEECSE-EEECTTCCEEEEEEE-SSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCC
T ss_pred CcEEEcCCe-EEEcCCCcEEEEEEe-CCCCCceEEEEEeCCCCCceEEEEeccccCCCCCCCEEEecCCCEEEEEECCCC
Confidence 346666777 899999999999965 45567889999842 1111 0135689999999
Q ss_pred cCCCeEEEEEEEcCCCCe-EEEEEEEEecce-------------eeEecCCceeeecCCcEEEEEEecCCCC-CceEEEe
Q psy14542 68 REDAGMYQCHVSADDDSA-QMSAQVILGGEL-------------VEIASSNQVVVDVGHRIELHCRVSPKRL-SSAKAWL 132 (371)
Q Consensus 68 ~~d~G~Y~C~~~~~~~~~-~~~~~l~v~~~~-------------~~~~~~~~~~~~~g~~v~l~C~~~~~~~-~~~v~W~ 132 (371)
.+|+|.|.|.+.+..+.. .....|.|...+ ..+...+...+.+|++++|.|.+.+.+. .+.+.|+
T Consensus 80 ~~D~G~Y~C~~~n~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~ 159 (242)
T 2znx_A 80 TEDFGMYFCQQSNSXPYTFGGGTKLEITGGGGSGGGGSGGGGSDIQLQESGPSLVKPSQTLSLTCSVTGDSITSDYXSXI 159 (242)
T ss_dssp GGGCEEEEEEECSSSSCEECCCEEEEEC---------------CCEEEEECCSEECTTSCEEEEEEEESSCGGGSCEEEE
T ss_pred hHHCEEEEEeEecCCceEECCCEEEEEcCCCCCCcccccccccceeeecCCcceecCCCeEEEEEEEEccccCCcceeeE
Confidence 999999999999865432 233566666322 1233333345689999999999987652 3789999
Q ss_pred eCC--EEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEe-----ccceEEEEEeecCCccceeEEEeecc
Q psy14542 133 KDG--LVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHML-----SSGELIIHQVDESDRYRSYQCRGVNK 197 (371)
Q Consensus 133 ~~~--~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~-----~~~~l~i~~~~~~d~~g~y~C~~~~~ 197 (371)
+++ ..+. ..+.+.... ..+......+++.+. ....|.|.+++.+| +|.|+|.+.+.
T Consensus 160 k~~~~~~~~----~l~~~~~~g----~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D-~G~Y~C~a~~~ 222 (242)
T 2znx_A 160 RKFPGNRLE----YMGYVSYSG----STYYNPSLKSRISITRDTSKNQYYLDLNSVTTED-TATYYCANXDG 222 (242)
T ss_dssp EECTTSCEE----EEEEECTTS----CEEECGGGTTCEEEEEETTTTEEEEEECSCCGGG-CEEEEEEETTS
T ss_pred eeCCCCCcE----EEEEEecCC----ccccCccccCcEEEEecCCCCEEEEEECCCCcCc-CEEEEEeccCC
Confidence 853 2111 011110000 000000001223222 12479999999999 99999999874
No 294
>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A
Probab=99.75 E-value=9.9e-17 Score=131.06 Aligned_cols=171 Identities=19% Similarity=0.352 Sum_probs=111.0
Q ss_pred ceEEEeCCCcEEEeccCcEEEEEEecCCCC-----CCeeEEEeCC--E--E-Eee------------------CCeeEEE
Q psy14542 11 LSIEMSPSGQVVVDVGHRIELHCRVSPKRL-----SSAKAWLKDG--L--V-LRR------------------NSDEVLV 62 (371)
Q Consensus 11 ~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~-----~~~~~W~~~~--~--~-~~~------------------~~~~~l~ 62 (371)
+.+...|.. +.+.+|++++|.|.+. +.+ .+.+.|+|++ . . +.. ....+|.
T Consensus 2 ~~v~~~p~~-~~v~~G~~v~L~C~~~-~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~ 79 (247)
T 1svz_A 2 ILMTQTPLY-LPVSLGDQASISCRSS-QTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLK 79 (247)
T ss_dssp CCEEEECSE-EEECTTCCEEEEEEES-SCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEE
T ss_pred CcEEecCCe-EEecCCCCEEEEEeCC-CcccccCCCceEEEEEECCCCCceEEEEEecccCCCCCCcEEeccCCCEEEEE
Confidence 446666766 8999999999999654 444 5789999832 1 1 110 1345899
Q ss_pred EccCCcCCCeEEEEEEEcCCCCe-EEEEEEEEecce-------------eeEecCCceeeecCCcEEEEEEecCCCC-Cc
Q psy14542 63 LDRVQREDAGMYQCHVSADDDSA-QMSAQVILGGEL-------------VEIASSNQVVVDVGHRIELHCRVSPKRL-SS 127 (371)
Q Consensus 63 i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~v~~~~-------------~~~~~~~~~~~~~g~~v~l~C~~~~~~~-~~ 127 (371)
|.+++.+|+|.|.|.+.+..+.. .....|.|...+ ..+...+...+.+|++++|.|.+.+.+. .+
T Consensus 80 I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~ 159 (247)
T 1svz_A 80 ISRVEAEDLGIYYCFQGSHFPPTFGGGTKLEIKGGGGSGGGGSGGGGSEVQLQQSGPELKKPGETVKISCKATNYAFTDY 159 (247)
T ss_dssp ESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC---------------CCEEEECCCEEECTTCCEEEEEEEESSCGGGS
T ss_pred ECCCCHHHCEEEEEEEccCCccEECCCEEEEEECCccccccccccccCceEEeCCCceeecCCCcEEEEEEEcCcccCCc
Confidence 99999999999999998865432 223566666321 1333444455689999999999988752 37
Q ss_pred eEEEeeCC--EEeeeCCeeEEEEcccC------cCCCeeEEEEEeCCceeEec-----cceEEEEEeecCCccceeEEEe
Q psy14542 128 AKAWLKDG--LVLRRNSDEVLVLDRVQ------REDAGMYQCHIEDGKYHMLS-----SGELIIHQVDESDRYRSYQCRG 194 (371)
Q Consensus 128 ~v~W~~~~--~~~~~~~~~~~~~~~~~------~~~~g~y~~~~~~~~~~~~~-----~~~l~i~~~~~~d~~g~y~C~~ 194 (371)
.+.|++++ ..+. ....+.... ....+ ++.+.. ...|.|.+++.+| +|.|.|.+
T Consensus 160 ~v~W~k~~~~~~~~----~~~~~~~~~~~~~~~~~~~~---------r~~~~~~~~~~~~~L~I~~v~~~D-sG~Y~C~a 225 (247)
T 1svz_A 160 SMHWVKQAPGGDLK----YVGWINTETDEPTFADDFKG---------RFAFSLDTSTSTAFLQINNLKNED-TATYFCVR 225 (247)
T ss_dssp CEEEEEECTTCCEE----EEEEECTTTCCEEECGGGSS---------SEEEEEEGGGTEEEEEECSCCGGG-CEEEEEEE
T ss_pred EEEEEEeCCCCCcE----EEEEEEcCCCccccCccccC---------cEEEEEecCCCEEEEEECCCChhH-CEEEEEEE
Confidence 89999963 1110 111111000 00112 222221 2589999999999 99999999
Q ss_pred ecc
Q psy14542 195 VNK 197 (371)
Q Consensus 195 ~~~ 197 (371)
.+.
T Consensus 226 ~n~ 228 (247)
T 1svz_A 226 DRH 228 (247)
T ss_dssp EEG
T ss_pred ecc
Confidence 985
No 295
>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}
Probab=99.75 E-value=1.1e-16 Score=131.54 Aligned_cols=178 Identities=13% Similarity=0.222 Sum_probs=111.4
Q ss_pred ceeeecCCcEEEEEEecCCC-CCceEEEeeCCEEeeeCCeeEEEEc------ccCcCCCeeEEEEEeCCceeEec-----
Q psy14542 105 QVVVDVGHRIELHCRVSPKR-LSSAKAWLKDGLVLRRNSDEVLVLD------RVQREDAGMYQCHIEDGKYHMLS----- 172 (371)
Q Consensus 105 ~~~~~~g~~v~l~C~~~~~~-~~~~v~W~~~~~~~~~~~~~~~~~~------~~~~~~~g~y~~~~~~~~~~~~~----- 172 (371)
...+.+|++++|.|.+.+.. +.+.+.|++.... ......+... ....... +++.+..
T Consensus 15 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~--~~~~~~~~~~~~~~~~~~~~~~~---------~R~~~~~~~~~~ 83 (256)
T 3juy_B 15 AEVKKPGASVKVSCQASGYRFSHFTVHWVRQAPG--QRFEWMGWINPYNGNKEFSAKFQ---------DRVTFTADTSAN 83 (256)
T ss_dssp CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTT--SCCEEEEEEETTTTEEEECTTTT---------TTEEEEEETTTT
T ss_pred CceecCCCeEEEEEEeecccccCceEEEEEECCC--CCcEEEEEEEcCCCcEeecccCc---------ceEEEEEecCCC
Confidence 34458999999999998742 2378999974210 0001111111 0011111 2333331
Q ss_pred cceEEEEEeecCCccceeEEEeecc-----------ccceeeeeeccceeeeecchhc----------cccceeeeeeee
Q psy14542 173 SGELIIHQVDESDRYRSYQCRGVNK-----------LTGASLLSVNRGRLSLTENKRL----------LSAAKMFEKHRI 231 (371)
Q Consensus 173 ~~~l~i~~~~~~d~~g~y~C~~~~~-----------~~~~~~~~~~~~~l~v~~~~~~----------~~p~~~~~~~~~ 231 (371)
...|.|.+++.+| +|.|.|.+.+. ......... .|.|...... .++.+...+...
T Consensus 84 ~~~L~I~~v~~~D-sG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~---~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (256)
T 3juy_B 84 TAYMELRSLRSAD-TAVYYCARVGEWGWDDSPYDNYYMDVWGKGT---TVIVSSGGGGSGGGGSGGGGSEIVLTQAPGTL 159 (256)
T ss_dssp EEEEEECSCCGGG-CEEEEEEECCCCCTTCCTTTTCSCCEECCCE---EEEECSCC----------CCCCCCEEEECSEE
T ss_pred EEEEEECCCCccc-CEEEEEeEEeccccccccccccceeEECCce---EEeecCCcccccccccCCCcceeEEEecCCeE
Confidence 2469999999999 99999999875 112222223 5666642211 134555556666
Q ss_pred eeeecCCeEEEEEEeecCCC-CceEEEeC--Ccccc------------cCCceEE--e--cceEEEeccCCCCCeEEEEE
Q psy14542 232 LNVKKDESVILPCSAQGNPL-PTIKWYKQ--DSPVE------------ESDRIQR--I--GSSLSISHVEESDSGVWNCV 292 (371)
Q Consensus 232 ~~~~~g~~~~l~C~~~~~p~-~~v~W~~~--~~~~~------------~~~~~~~--~--~~~l~i~~~~~~d~G~Y~C~ 292 (371)
. +.+|++++|.|.+.+.+. +.+.|++. +..+. ...++.. . ..+|.|.++..+|+|.|.|.
T Consensus 160 ~-v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~ 238 (256)
T 3juy_B 160 S-LSPGERATFSCRSSHSIRSRRVAWYQHKPGQAPRLVIHGVSNRASGISDRFSGSGSGTDFTLTITRVEPEDFALYYCQ 238 (256)
T ss_dssp E-ECTTSCEEEEEEESSCCTTCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEE
T ss_pred E-EeCCCCEEEEEEECCCcCCeeEEEEEECCCCCcEEEEEecCccCCccCCcEEEEccCCEEEEEECCCCHhHCEEEEEE
Confidence 6 899999999999998776 89999983 33222 1233332 1 23599999999999999999
Q ss_pred EEcCCC
Q psy14542 293 ANNSEG 298 (371)
Q Consensus 293 a~n~~g 298 (371)
|.|..+
T Consensus 239 ~~~~~~ 244 (256)
T 3juy_B 239 VYGASS 244 (256)
T ss_dssp ECCSSC
T ss_pred EeeCCC
Confidence 998654
No 296
>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E
Probab=99.75 E-value=1.6e-17 Score=135.67 Aligned_cols=173 Identities=13% Similarity=0.202 Sum_probs=111.7
Q ss_pred eEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEe----------------CCEEEee-------------CCeeEEE
Q psy14542 12 SIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLK----------------DGLVLRR-------------NSDEVLV 62 (371)
Q Consensus 12 ~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~----------------~~~~~~~-------------~~~~~l~ 62 (371)
.+...|.. +.+.+|++++|.|.+. +.+.+.+.|+| ++..... ....+|.
T Consensus 3 ~v~~~p~~-~~v~~G~~v~L~C~~~-~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~ 80 (246)
T 4dzb_B 3 VVSQHPSW-VISKSGTSVKIECRSL-DFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLT 80 (246)
T ss_dssp CEEEECSE-EEEETTSCEEEEEEES-SSCCCSEEEEEECTTSCCEEEEEECTTSCCEECTTCCGGGEEEEEEETTEEEEE
T ss_pred ccEECCcE-EEEeCCCcEEEEeEec-CCCceEEEEEEECCCCCcEEEEEEccCCCceecCcccCCcEEEEecCCCEEEEE
Confidence 45666666 8899999999999654 55788899999 3222211 1355899
Q ss_pred EccCCcCCCeEEEEEEEcCCC----CeEEEEEEEEec-----ceeeEec-CCc-eeeecCCcEEEEEEecCCCCC-ceEE
Q psy14542 63 LDRVQREDAGMYQCHVSADDD----SAQMSAQVILGG-----ELVEIAS-SNQ-VVVDVGHRIELHCRVSPKRLS-SAKA 130 (371)
Q Consensus 63 i~~~~~~d~G~Y~C~~~~~~~----~~~~~~~l~v~~-----~~~~~~~-~~~-~~~~~g~~v~l~C~~~~~~~~-~~v~ 130 (371)
|.+++.+|+|.|.|.+.+..+ .......|.|.. .+|.+.. .+. ..+.+|+.++|.|.+.+.+++ ..+.
T Consensus 81 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~i~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~ 160 (246)
T 4dzb_B 81 VTSAHPEDSSFYICSARTSGDFGEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELS 160 (246)
T ss_dssp ECSCCGGGCEEEEEEECCSSGGGCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEE
T ss_pred ECCCCHHHCEEEEEEEecCCCCcceEEcCCEEEEEecCCCcccCCceEeecCCchhccCCCcEEEEEEEccCcCCceEEE
Confidence 999999999999999986532 112334566652 2333322 222 123569999999999886552 3899
Q ss_pred EeeCCEEeeeCCeeEE-EEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeecc
Q psy14542 131 WLKDGLVLRRNSDEVL-VLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNK 197 (371)
Q Consensus 131 W~~~~~~~~~~~~~~~-~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~ 197 (371)
|+++|..+........ ........+.|.|. +. +.|.|.....+|..|.|+|.+.+.
T Consensus 161 W~k~g~~l~~~~~~~~~~~~~~~~~~~g~~~---------~~--s~l~i~~~~~~d~~g~YtC~v~~~ 217 (246)
T 4dzb_B 161 WWVNGKEVHSGVCTDPQPLKEQPALNDSRYA---------LS--SRLRVSATFWQNPRNHFRCQVQFY 217 (246)
T ss_dssp EEETTEEECTTEEECSSCEESSTTSTTCCEE---------EE--EEEEEEHHHHTCTTCEEEEEEEEC
T ss_pred EEECCEECCCCcccccccccccccCCCCCEE---------EE--EEEEECHHHhccCCCeEEEEEEec
Confidence 9999988865421100 00011111233332 21 457788776665479999999987
No 297
>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*
Probab=99.75 E-value=6.6e-17 Score=129.56 Aligned_cols=185 Identities=14% Similarity=0.167 Sum_probs=113.5
Q ss_pred CceeeecCCcEEEEEEecCCCC-CceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEec-----cceEE
Q psy14542 104 NQVVVDVGHRIELHCRVSPKRL-SSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLS-----SGELI 177 (371)
Q Consensus 104 ~~~~~~~g~~v~l~C~~~~~~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~-----~~~l~ 177 (371)
+...+.+|++++|.|.+.+.+. ...+.|+|..... .....+...... ....+ .....+++.+.. +..|.
T Consensus 8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~--~~~~l~~~~~~~--~~~~~-~~~~~~R~~~~~~~~~~~~~L~ 82 (220)
T 2fbj_H 8 GGGLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGK--GLEWIGEIHPDS--GTINY-TPSLKDKFIISRDNAKNSLYLQ 82 (220)
T ss_dssp CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTS--CEEEEEEECTTS--SCEEE-CTTTTTTEEEEECSSSCEEEEE
T ss_pred CCeEecCCCcEEEEEEecCccCCCceEEEEEECCCC--CeEEEEEEccCC--Cceec-CCccCCcEEEEeeCCCCEEEEE
Confidence 3445589999999999987641 3789999853100 000111111000 00000 000012333332 25799
Q ss_pred EEEeecCCccceeEEEeeccccce---eeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecC-CC--
Q psy14542 178 IHQVDESDRYRSYQCRGVNKLTGA---SLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGN-PL-- 251 (371)
Q Consensus 178 i~~~~~~d~~g~y~C~~~~~~~~~---~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-- 251 (371)
|.+++.+| +|.|.|.+.+. .+. ..... .|.|..... .+|.+...+ ... +..|+.++|.|.+.+. |.
T Consensus 83 I~~v~~~D-sG~Y~C~~~~~-~~~~~~~~~~~---~L~V~~~~~-~~P~v~~~~-~~~-~~~g~~v~L~C~~~g~~P~~~ 154 (220)
T 2fbj_H 83 MSKVRSED-TALYYCARLHY-YGYNAYWGQGT---LVTVSAESA-RNPTIYPLT-LPP-ALSSDPVIIGCLIHDYFPSGT 154 (220)
T ss_dssp ECSCCGGG-CEEEEEEEEET-TTEEEEECCCE---EEEECSSCC-BCCEEEEEC-CCS-SSCCSSEEEEEEEEEEBSCCC
T ss_pred ECCCChhh-CEEEEEEEecc-ccccceecCCE---EEEecCCCC-CCCEEEEee-ccc-ccCCCcEEEEEEEEeEECCCc
Confidence 99999999 99999999886 332 11222 666663211 345554443 333 6789999999999886 76
Q ss_pred CceEEEeCCccccc--CCce------EEecceEEEeccCCCCCeEEEEEEEcCCCCce
Q psy14542 252 PTIKWYKQDSPVEE--SDRI------QRIGSSLSISHVEESDSGVWNCVANNSEGQDK 301 (371)
Q Consensus 252 ~~v~W~~~~~~~~~--~~~~------~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~ 301 (371)
+.+.|++++..+.. .... ....+.|.|.....+|.|.|+|.|.|..|...
T Consensus 155 ~~v~W~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~ytC~v~n~~~~~~ 212 (220)
T 2fbj_H 155 MNVTWGKSGKDITTVNFPPALASGGRYTMSNQLTLPAVECPEGESVKCSVQHDSNPVQ 212 (220)
T ss_dssp EEEEESCCCSSCEEEECCCEECSSSCEEEEEEEEECGGGSCTTCEEEEEEEETTSCCE
T ss_pred EEEEEecCCEecceEecCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEcCCCceE
Confidence 68999999876521 1111 11123588988888999999999999988754
No 298
>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}
Probab=99.75 E-value=8.7e-17 Score=132.06 Aligned_cols=178 Identities=19% Similarity=0.244 Sum_probs=112.2
Q ss_pred ceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCC-----EEEe---------------------eCCeeEEEEc
Q psy14542 11 LSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDG-----LVLR---------------------RNSDEVLVLD 64 (371)
Q Consensus 11 ~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~-----~~~~---------------------~~~~~~l~i~ 64 (371)
..|...|.. +.+.+|++++|.|.+. +.+.+.+.|+|.. ..+. .....+|.|.
T Consensus 4 ~~v~q~p~~-~~v~~G~~v~L~C~~~-~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~ 81 (256)
T 3tf7_C 4 QSVTQPDAR-VTVSEGASLQLRCKYS-YSATPYLFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEAEFSKSDSSFHLRKA 81 (256)
T ss_dssp CEEECSCSE-EEEETTSCEEECCEEE-CSSCCEEEEEEECTTSCCEEEEEECSSCSEEECSTTCEEEEETTTTEEEEEES
T ss_pred cEEEecCce-EEecCCCeEEEEEEeC-CCCCceEEEEEECCCCCeEEEEEEccCCcccccCCCeEEEEcCCCCEEEEEEC
Confidence 345555666 8999999999999654 4478899999821 1111 0145689999
Q ss_pred cCCcCCCeEEEEEEEcCCCCe----EEEEEEEEec-------------------ceeeEecCCceee-ecCCcEEEEEEe
Q psy14542 65 RVQREDAGMYQCHVSADDDSA----QMSAQVILGG-------------------ELVEIASSNQVVV-DVGHRIELHCRV 120 (371)
Q Consensus 65 ~~~~~d~G~Y~C~~~~~~~~~----~~~~~l~v~~-------------------~~~~~~~~~~~~~-~~g~~v~l~C~~ 120 (371)
+++.+|+|.|.|.+.+..+.. .....|.|.. .++.+...+.... .+|++++|.|.+
T Consensus 82 ~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~ 161 (256)
T 3tf7_C 82 SVHRSDSAVYFCAVSAKGTGSKLSFGKGAKLTVSPGGGGSGGGGSGGGGSGGGGSEAAVTQSPRNKVTVTGENVTLSCRQ 161 (256)
T ss_dssp SCCGGGCSEEEEEEECTTCTTCEEECCCEEEEEEC---------------------CCEEESCSEEEEETTCCEEECEEE
T ss_pred CCCcccCEEEEEEEecCCCccceEECCCeEEEEeCCCCCcCCCCcCcccCCCCcCccEEEecCCEEEEeCCCcEEEEEEc
Confidence 999999999999999865422 1235666663 2344555554443 799999999999
Q ss_pred cCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEe----ccceEEEEEeecCCccceeEEEeec
Q psy14542 121 SPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHML----SSGELIIHQVDESDRYRSYQCRGVN 196 (371)
Q Consensus 121 ~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~----~~~~l~i~~~~~~d~~g~y~C~~~~ 196 (371)
.+. . +.+.|++....... .......... ........+++... ....|.|.+++.+| +|.|+|.+.+
T Consensus 162 ~~~-~-~~v~W~k~~~~~~~--~~~~~~~~~~-----~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~D-sG~Y~C~a~n 231 (256)
T 3tf7_C 162 TNS-H-NYMYWYRQDTGHEL--RLIYYSYGAG-----NLQIGDVPDGYKATRTTQEDFFLTLESASPSQ-TSLYFCASSD 231 (256)
T ss_dssp CSC-C-SEEEEEEECTTSCE--EEEEEEESTT-----CCEECSCCTTCEEECCSSSBCEEEESSCCGGG-CEEEEEEEEE
T ss_pred CCC-c-eEEEEEEECCCCCe--EEEEEEcCCC-----ceecCccCCceEEEeCCCCeEEEEECCCCHHH-CEEEEEEecC
Confidence 876 3 69999984211000 0011110000 00000001222222 23579999999999 9999999988
Q ss_pred cccce
Q psy14542 197 KLTGA 201 (371)
Q Consensus 197 ~~~~~ 201 (371)
. .|.
T Consensus 232 ~-~g~ 235 (256)
T 3tf7_C 232 A-PGQ 235 (256)
T ss_dssp E-TTE
T ss_pred C-CCc
Confidence 7 443
No 299
>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O
Probab=99.74 E-value=6.1e-18 Score=118.32 Aligned_cols=92 Identities=20% Similarity=0.309 Sum_probs=80.0
Q ss_pred cccceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccCCceEE--e--cceEEEeccCCCCCeEEEEEEEc
Q psy14542 220 LSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQR--I--GSSLSISHVEESDSGVWNCVANN 295 (371)
Q Consensus 220 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~--~--~~~l~i~~~~~~d~G~Y~C~a~n 295 (371)
.+|.|...+.... +.+|+.+.|.|.+.|.|.|.+.|+++|..+..+.++.. . ..+|.|.++..+|+|.|+|.|.|
T Consensus 12 ~pP~f~~~p~~~~-v~~G~~~~l~C~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N 90 (107)
T 3knb_B 12 SPPCFLRFPRPVR-VVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAGVYVCRARN 90 (107)
T ss_dssp EEEEEEECCCCEE-EETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEECCEETTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred CCCEEEeCCCcEE-EeCCCcEEEEEEEEEecCCEEEEEECcccccceeeEEEeecCceEEEEEecCChhhCEEEEEEEEE
Confidence 5677777777777 99999999999999999999999999999988877663 2 23799999999999999999999
Q ss_pred CCCCceeEEEEEEecCc
Q psy14542 296 SEGQDKMQLFIQYAHGK 312 (371)
Q Consensus 296 ~~g~~~~~~~l~v~~~p 312 (371)
..|....++.|.|.++|
T Consensus 91 ~~G~~~~~~~l~V~~pP 107 (107)
T 3knb_B 91 AAGEAYAAAAVTVLEPP 107 (107)
T ss_dssp TTEEEEEEEEEEEEC--
T ss_pred CCCEEEEEEEEEEEcCC
Confidence 99999999999998876
No 300
>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}
Probab=99.74 E-value=6.3e-17 Score=125.07 Aligned_cols=143 Identities=15% Similarity=0.162 Sum_probs=99.6
Q ss_pred cEEEeccCcEEEEEEecCCCCCCeeEEEeC-CEEEe------------e---------CCeeEEEEccCCcCCCeEEEEE
Q psy14542 20 QVVVDVGHRIELHCRVSPKRLSSAKAWLKD-GLVLR------------R---------NSDEVLVLDRVQREDAGMYQCH 77 (371)
Q Consensus 20 ~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~-~~~~~------------~---------~~~~~l~i~~~~~~d~G~Y~C~ 77 (371)
++.+.+|++++|.|......+.+.+.|+|+ +..+. . ..+++|.|.+++.+|+|.|+|.
T Consensus 8 ~v~v~~G~~vtL~c~~~~~~~~~~i~W~k~~~~~i~~~~~~~~~~~~~~~~~~R~~l~~~~~sL~I~~v~~~D~G~Y~C~ 87 (180)
T 2dru_A 8 NVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGALRIYNVSKEDRGDYYMR 87 (180)
T ss_dssp EEEEETTSCEEECCCSSCCCSCSEEEEESSSSCEEEEECSSSCEEECSSTTTTTEEECTTTCCEEECSCCGGGCEEEEEE
T ss_pred eEEEEeCCCEEEeCCCCCCCceeEEEEEecCCeEEEEEECCCCeeEcchhcCCeEEEeCCCccEEEcCCCHHHCeEEEEE
Confidence 378999999999996543344678999994 32221 0 1456799999999999999999
Q ss_pred EEcCCCCeEEEEEEEEecceeeEecCCceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCe
Q psy14542 78 VSADDDSAQMSAQVILGGELVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAG 157 (371)
Q Consensus 78 ~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g 157 (371)
+.+.. .....+.|.|...++ .|... ..++.++|.|.+...+. +.+.|++++..+....
T Consensus 88 v~~~~-~~~~~~~L~V~~~~~----~P~i~-~~~~~v~L~C~~~~gp~-p~i~W~~~~~~l~~~~--------------- 145 (180)
T 2dru_A 88 MLHET-EDQWKITMEVYEMVS----KPMIY-WECSNATLTCEVLEGTD-VELKLYQGKEHLRSLR--------------- 145 (180)
T ss_dssp EESSS-EEEEEEEEEEECCCC----CCEEE-EEGGGTEEEEECSSCTT-CEEEEEETTEEEEEES---------------
T ss_pred EEcCC-eEEEEEEEEEECCCC----CCEEE-ecCCCEEEEEEeCCCCC-CEEEEEECCeECcCCC---------------
Confidence 98765 556778888873211 11111 34567999999944465 8999999998765210
Q ss_pred eEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceee
Q psy14542 158 MYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASL 203 (371)
Q Consensus 158 ~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~ 203 (371)
+..|.+.. .+| .|.|+|.|.|. .+...
T Consensus 146 ---------------~~~l~~~~--~~d-~g~Y~C~a~N~-~~~~~ 172 (180)
T 2dru_A 146 ---------------QKTMSYQW--TNL-RAPFKCKAVNR-VSQES 172 (180)
T ss_dssp ---------------SSEEEEEC--SCC-SSCEEEEEEET-TEEEE
T ss_pred ---------------CCEEEEEE--hhc-CccEEEEEecC-cCccc
Confidence 13444422 677 99999999998 55443
No 301
>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}
Probab=99.74 E-value=1.9e-17 Score=137.02 Aligned_cols=174 Identities=17% Similarity=0.244 Sum_probs=110.0
Q ss_pred cceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeC--C------------------------EEEee--CCeeEE
Q psy14542 10 SLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKD--G------------------------LVLRR--NSDEVL 61 (371)
Q Consensus 10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~--~------------------------~~~~~--~~~~~l 61 (371)
.+.+...|.. +.+.+|++++|.|.+. .+...+.|+|. + ..+.. ....+|
T Consensus 26 ~~~v~~~p~~-v~v~~G~~v~L~C~~~--~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL 102 (268)
T 3pl6_D 26 GAGVSQTPSN-KVTEKGKYVELRCDPI--SGHTALYWYRQSLGQGPEFLIYFQGTGAADDSGLPNDRFFAVRPEGSVSTL 102 (268)
T ss_dssp -SSCBCCCSE-EEEETTCCEEEEEBCB--TTCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEE
T ss_pred CceeEeCCCE-EEecCCCCEEEEEEeC--CCCceEEEEEECCCCCcEEEEEECCCCccccCCCccCcEEEEecCCCEEEE
Confidence 3445555655 8899999999999654 46778999981 1 11111 136789
Q ss_pred EEccCCcCCCeEEEEEEEcCC--CCeEEEEEEEEec-----ceeeEec-CCc-eeeecCCcEEEEEEecCCCCCc-eEEE
Q psy14542 62 VLDRVQREDAGMYQCHVSADD--DSAQMSAQVILGG-----ELVEIAS-SNQ-VVVDVGHRIELHCRVSPKRLSS-AKAW 131 (371)
Q Consensus 62 ~i~~~~~~d~G~Y~C~~~~~~--~~~~~~~~l~v~~-----~~~~~~~-~~~-~~~~~g~~v~l~C~~~~~~~~~-~v~W 131 (371)
.|.+++.+|+|.|.|.+.+.. ........|.|.. .+|.+.. .+. ..+..|+.++|.|.+.+.++++ .++|
T Consensus 103 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W 182 (268)
T 3pl6_D 103 KIQRTERGDSAVYLCATSALGDTQYFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSW 182 (268)
T ss_dssp EECSCCGGGCEEEEEEEESSSSSCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEE
T ss_pred EECCCCcccCEEEEEEEecCCCceeeCCcEEEEEecCcccccCCceEEeCCCcccccCCCceEEEEEECcccCCCeEEEE
Confidence 999999999999999999742 2223344566653 1333322 222 2235699999999998865523 8999
Q ss_pred eeCCEEeeeCCeeE-EEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeecc
Q psy14542 132 LKDGLVLRRNSDEV-LVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNK 197 (371)
Q Consensus 132 ~~~~~~~~~~~~~~-~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~ 197 (371)
+++|..+....... ...........|.|. +. +.|.|.....+|+.|.|+|.+.+.
T Consensus 183 ~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~---------~~--s~l~i~~~~~~d~~g~YtC~v~~~ 238 (268)
T 3pl6_D 183 WVNGKEVHSGVCTDPQPLKEQPALNDSRYS---------LS--SRLRVSATFWQNPRNHFRCQVQFY 238 (268)
T ss_dssp EESSSEECTTEEECSSCEESSTTCTTCCEE---------EE--EEEEEEHHHHSCTTCEEEEEEEEC
T ss_pred EECCEECCCCeEeccccccccccCCCCcEE---------EE--EEEEEcHHHhccCCCEEEEEEEcC
Confidence 99998876532110 001111222334332 21 457777766554389999999987
No 302
>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1
Probab=99.74 E-value=5.3e-17 Score=132.08 Aligned_cols=171 Identities=19% Similarity=0.305 Sum_probs=108.6
Q ss_pred eeeecCCcEEEEEEecCCC---CCceEEEeeCC--EEeeeCCeeEEEEcc--cCcCCCeeEEEEEeCCceeEec---cce
Q psy14542 106 VVVDVGHRIELHCRVSPKR---LSSAKAWLKDG--LVLRRNSDEVLVLDR--VQREDAGMYQCHIEDGKYHMLS---SGE 175 (371)
Q Consensus 106 ~~~~~g~~v~l~C~~~~~~---~~~~v~W~~~~--~~~~~~~~~~~~~~~--~~~~~~g~y~~~~~~~~~~~~~---~~~ 175 (371)
..+.+|+.++|.|.+.+.+ ..+.+.|+++. ..+. .+.... ......+ ++.+.. ...
T Consensus 11 ~~v~~G~~v~L~C~~~~~~~~~~~~~i~W~k~~~~~~~~-----~~~~~~~~~~~~~~~---------r~~~~~~~~~~~ 76 (240)
T 1moe_A 11 LAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPK-----LLIYRASNLESGIPV---------RFSGTGSRTDFT 76 (240)
T ss_dssp EEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCE-----EEEETTTEECTTCCT---------TEEEEEETTEEE
T ss_pred EEecCCCCEEEEEeCCCccccCCCceEEEEEECCCCCce-----EEEEEecccCcCCCc---------cEEEEecCCeEE
Confidence 3458999999999999887 23899999852 1110 000000 0001112 222221 247
Q ss_pred EEEEEeecCCccceeEEEeeccccce-eeeeeccceeeeecchhccccc-eeeeeeeeeeeecCCeEEEEEEeecCCC--
Q psy14542 176 LIIHQVDESDRYRSYQCRGVNKLTGA-SLLSVNRGRLSLTENKRLLSAA-KMFEKHRILNVKKDESVILPCSAQGNPL-- 251 (371)
Q Consensus 176 l~i~~~~~~d~~g~y~C~~~~~~~~~-~~~~~~~~~l~v~~~~~~~~p~-~~~~~~~~~~~~~g~~~~l~C~~~~~p~-- 251 (371)
|.|.+++.+| +|.|+|.+.+. .+. ..... .|.|.......+|. +...+.... +..|+.++|.|.+.+.|.
T Consensus 77 L~I~~v~~~D-~G~Y~C~~~n~-~~~~~~~~~---~l~V~~~~~~~~~~~~~~~~~~~~-v~~G~~v~L~C~~~g~p~~~ 150 (240)
T 1moe_A 77 LIIDPVEADD-VATYYCQQTNE-DPYTFGGGT---KLEIKGGGSGGGGEVQLQQSGAEL-VEPGASVKLSCTASGFNIKD 150 (240)
T ss_dssp EEESSCCGGG-CEEEEEEECSS-SSCCBCCCE---EEEECCCSCCCCCCCEEEECCCEE-ECTTCCEEEEEEEESSCGGG
T ss_pred EEEcCCChhh-CEEEEEEEccC-CceeecCCE---EEEEecCCCCCCceEEEeCCCceE-EeCCCcEEEEEEEcCccCCC
Confidence 9999999999 99999999987 432 22233 66666332111222 333344444 899999999999998874
Q ss_pred CceEEEeCC--cccc-----------------cCCceEEe------cceEEEeccCCCCCeEEEEEEEcC
Q psy14542 252 PTIKWYKQD--SPVE-----------------ESDRIQRI------GSSLSISHVEESDSGVWNCVANNS 296 (371)
Q Consensus 252 ~~v~W~~~~--~~~~-----------------~~~~~~~~------~~~l~i~~~~~~d~G~Y~C~a~n~ 296 (371)
+.+.|+++. ..+. ...++... ..+|.|.++..+|+|.|+|.|.+.
T Consensus 151 ~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~ 220 (240)
T 1moe_A 151 TYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLTSEDTAVYYCAPFGY 220 (240)
T ss_dssp SCEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECST
T ss_pred CEEEEEEECCCCCcEEEEEEcccCCccccCccccccEEEEEcccCCEEEEEECcCCHHHCEEEEEEEEec
Confidence 589999962 2221 12344422 147999999999999999999853
No 303
>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*
Probab=99.74 E-value=4.8e-17 Score=130.88 Aligned_cols=180 Identities=14% Similarity=0.185 Sum_probs=110.9
Q ss_pred CceeeecCCcEEEEEEecCCC-CCceEEEeeCC--EEeeeCCeeEEEEccc------CcCCCeeEEEEEeCCceeEec--
Q psy14542 104 NQVVVDVGHRIELHCRVSPKR-LSSAKAWLKDG--LVLRRNSDEVLVLDRV------QREDAGMYQCHIEDGKYHMLS-- 172 (371)
Q Consensus 104 ~~~~~~~g~~v~l~C~~~~~~-~~~~v~W~~~~--~~~~~~~~~~~~~~~~------~~~~~g~y~~~~~~~~~~~~~-- 172 (371)
+...+.+|++++|.|.+.+.+ ....+.|++.. ..+. ..+..... .... .+++.+..
T Consensus 8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~----~~~~~~~~~~~~~~~~~~---------~~R~~~~~~~ 74 (225)
T 1op3_H 8 GGGLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLE----WVASISTSSTYRDYADAV---------KGRFTVSRDD 74 (225)
T ss_dssp CCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEE----EEEEECGGGCCEEECTTT---------TTTEEEEEET
T ss_pred CCeEecCCCCEEEEEEecCcccCCceEEEEEeCCCCCcE----EEEEEccCCCccccCccc---------CCceEEEecC
Confidence 344568999999999998765 12789999853 2111 11111100 0011 12333332
Q ss_pred ---cceEEEEEeecCCccceeEEEeeccccc-----eeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEE
Q psy14542 173 ---SGELIIHQVDESDRYRSYQCRGVNKLTG-----ASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPC 244 (371)
Q Consensus 173 ---~~~l~i~~~~~~d~~g~y~C~~~~~~~~-----~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C 244 (371)
+..|.|.+++.+| +|.|.|.+.+. .+ ..........|.|..... .+|.+........ +..|+.++|.|
T Consensus 75 ~~~~~sL~I~~v~~~D-~G~Y~C~~~~~-~~~~~~~~~~~~~~~~~L~V~~~~~-~~P~v~~~~~~~~-~~~g~~v~L~C 150 (225)
T 1op3_H 75 LEDFVYLQMHKMRVED-TAIYYCARKGS-DRLSDNDPFDAWGPGTVVTVSPAST-KGPSVFPLAPSSK-STSGGTAALGC 150 (225)
T ss_dssp TTTEEEEEECSCCGGG-CEEEEEEEECC-SSCCSSCCEEEECCCEEEEEESCSC-BCCEEEEECCCTT-CCCCCEEEEEE
T ss_pred CCCEEEEEECCCChhh-CEEEEEEEecC-CCccccccceeecCCEEEecccCCC-cCCeEEEeccccc-ccCCCcEEEEE
Confidence 3589999999999 99999999987 32 110100112666663211 2344433222223 56899999999
Q ss_pred EeecC-CCC-ceEEEeCCcccccC--Cce------EEecceEEEeccCCCCCeEEEEEEEcCCCCce
Q psy14542 245 SAQGN-PLP-TIKWYKQDSPVEES--DRI------QRIGSSLSISHVEESDSGVWNCVANNSEGQDK 301 (371)
Q Consensus 245 ~~~~~-p~~-~v~W~~~~~~~~~~--~~~------~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~ 301 (371)
.+.+. |.+ .+.|++++..+... ... ....+.|.|..+..+| |.|+|.|.|..+...
T Consensus 151 ~~~g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~ 216 (225)
T 1op3_H 151 LVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTK 216 (225)
T ss_dssp EEEEEBSSCCEEECCTTSCCTTCEECCCEECTTSCEEEEEEEEEEGGGTTC-CCCCEEEEEGGGTEE
T ss_pred EEEeEECCCeEEEEecCCCcCCeEecCceeCCCCCEEEEEEEEEechhcCC-CcEEEEEEcCCCCcc
Confidence 99885 766 89999998753211 111 1123468999998888 999999999776543
No 304
>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D*
Probab=99.74 E-value=3.9e-18 Score=138.16 Aligned_cols=170 Identities=12% Similarity=0.163 Sum_probs=109.5
Q ss_pred cceEEEeCCCcEE-EeccCcEEEEEEecCCC--CCC-eeEEEeCCEEEeeC--------------CeeEEEEccCCcCCC
Q psy14542 10 SLSIEMSPSGQVV-VDVGHRIELHCRVSPKR--LSS-AKAWLKDGLVLRRN--------------SDEVLVLDRVQREDA 71 (371)
Q Consensus 10 ~~~~~~~p~~~~~-~~~G~~v~l~C~~~~~~--~~~-~~~W~~~~~~~~~~--------------~~~~l~i~~~~~~d~ 71 (371)
+|.+.+.|..... +.+|++++|.|.+.... |.+ .+.|+|++..+... ....|.|.+++.+|+
T Consensus 15 ~P~v~~~pp~~~~~v~~G~~v~L~C~~~g~~~~P~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~ 94 (239)
T 1i1c_A 15 VSSVFIFPPKTKDVLGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDWLNG 94 (239)
T ss_dssp --CEEEECCCHHHHTTSSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEECCCEECTTSCEEEEEEEECCHHHHHTT
T ss_pred CCEEEEECCChHHhcccCCcEEEEEEEecCccCCCCCEEEEEECCccccCcccccceEcCCCcEEEEEEEEEEhhHccCC
Confidence 5667777776233 78999999999766432 655 89999988665421 234799999999999
Q ss_pred eEEEEEEEcCCCCeEE--EEEE--EEecceeeEecCCcee-eecCCcEEEEEEecCCCC-CceEEEeeCCEEeeeCCeeE
Q psy14542 72 GMYQCHVSADDDSAQM--SAQV--ILGGELVEIASSNQVV-VDVGHRIELHCRVSPKRL-SSAKAWLKDGLVLRRNSDEV 145 (371)
Q Consensus 72 G~Y~C~~~~~~~~~~~--~~~l--~v~~~~~~~~~~~~~~-~~~g~~v~l~C~~~~~~~-~~~v~W~~~~~~~~~~~~~~ 145 (371)
|.|+|.+.+..+.... .+.+ .+. .+|.+...+... ...|+.++|.|.+.+.++ +..++|+++|..+.....
T Consensus 95 g~Y~C~~~~~~~~~~~~~~v~~~~~~~-~~P~v~v~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~-- 171 (239)
T 1i1c_A 95 KTFKCKVNSGAFPAPIEKSISKPEGTP-RGPQVYTMAPPKEEMTQSQVSITCMVKGFYPPDIYTEWKMNGQPQENYKN-- 171 (239)
T ss_dssp CCEEEEEECSSSSSCEEEEECCCSSCC-BCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEE--
T ss_pred CeEEEEEecccCCCCcEEEEecCCCCC-cCCEEEEECCChHHhcCCcEEEEEEEeeeECCCeEEEEEECCEECCCcee--
Confidence 9999999988775432 2222 222 344443322221 135789999999988543 368999999987743211
Q ss_pred EEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeecc
Q psy14542 146 LVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNK 197 (371)
Q Consensus 146 ~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~ 197 (371)
.......+|.| .+. +.|.|......| .|.|+|.+.|.
T Consensus 172 ---~~~~~~~dgt~---------~~~--s~l~v~~~~~~~-~g~YtC~v~n~ 208 (239)
T 1i1c_A 172 ---TPPTMDTDGSY---------FLY--SKLNVKKETWQQ-GNTFTCSVLHE 208 (239)
T ss_dssp ---CCCEECTTSCE---------EEE--EEEEEEHHHHHT-TCCEEEEEECT
T ss_pred ---cCceECCCCCE---------EEE--EEEEEChhhcCC-CCEEEEEEECC
Confidence 01111222322 221 456666655567 89999999987
No 305
>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}
Probab=99.74 E-value=8.2e-17 Score=132.50 Aligned_cols=174 Identities=17% Similarity=0.254 Sum_probs=102.7
Q ss_pred cceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEe---CCE--EEe--e-----------------------CCee
Q psy14542 10 SLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLK---DGL--VLR--R-----------------------NSDE 59 (371)
Q Consensus 10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~---~~~--~~~--~-----------------------~~~~ 59 (371)
++.|...|.. +.+.+|++++|.|.+ .+.+.+.+.|+| ++. .+. . ....
T Consensus 2 s~~v~~~p~~-~~v~~G~~v~L~C~~-~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 79 (259)
T 3omz_A 2 SSNLEGRTKS-VIRQTGSSAEITCDL-AEGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDTYGSTRKNL 79 (259)
T ss_dssp ---------C-EEEETTCCEEEECCC------CEEEEEEECTTSCCEEEEEEETTTCCEEECTTCCBTTEEEECC--CCC
T ss_pred ccccccCCce-eEecCCCcEEEEEEE-ccCCCcEEEEEEECCCCCcEEEEEEecCcCccccCCCCCcceeEeecCCCCeE
Confidence 3556677777 899999999999954 455677899998 211 110 0 0345
Q ss_pred EEEEccCCcCCCeEEEEEEEcCCCC---eEEEEEEEEecc----------------eeeEecCCc-eeeecCCcEEEEEE
Q psy14542 60 VLVLDRVQREDAGMYQCHVSADDDS---AQMSAQVILGGE----------------LVEIASSNQ-VVVDVGHRIELHCR 119 (371)
Q Consensus 60 ~l~i~~~~~~d~G~Y~C~~~~~~~~---~~~~~~l~v~~~----------------~~~~~~~~~-~~~~~g~~v~l~C~ 119 (371)
+|.|.+++.+|+|.|.|.+.+..+. ......|.|... .+.+...+. ..+.+|++++|.|.
T Consensus 80 ~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~ 159 (259)
T 3omz_A 80 RMILRNLIENDSGVYYCATWDQNYYKKLFGSGTSLVVTDKQGSADDAKKDAAKKDGAQKVTQAQSSVSMPVRKAVTLNCL 159 (259)
T ss_dssp EEEESSCCGGGCEEEEEEEECTTSSCEEECCCEEEEEEC------------------CEEECCCCCEEEETTCCEEECCE
T ss_pred EEEECCCCcccCEEEEEEEeeCCccccEECCCCEEEEecCCCCccccccccccccCCeeeEEeCCEEEEcCCCCEEEEEE
Confidence 7999999999999999999986552 223456666632 234444444 44589999999999
Q ss_pred ecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEe-----ccceEEEEEeecCCccceeEEEe
Q psy14542 120 VSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHML-----SSGELIIHQVDESDRYRSYQCRG 194 (371)
Q Consensus 120 ~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~-----~~~~l~i~~~~~~d~~g~y~C~~ 194 (371)
+.+..+.+.+.|++.+... ........... ...+ ..+++.+. ....|.|.+++.+| +|.|.|.+
T Consensus 160 ~~~~~~~~~v~W~k~~~~~--~~~~~~~~~~~--~~~~------~~~r~~~~~~~~~~~~~L~I~~v~~~D-sG~Y~C~~ 228 (259)
T 3omz_A 160 YETSWWSYYIFWYKRLPSK--EMIFLIRQGSD--EQNA------KSGRYSVNFKKAAKSVALTISALQLED-SAKYFCAL 228 (259)
T ss_dssp EECCCSSCEEEEEEECTTC--CEEEEEEEETT--SCCC------EETTEEECCBGGGTBCCEEESSCCGGG-CSEEEEEE
T ss_pred CCCccCCceEEEeeeCCCC--CcEEEEEECCc--CCcc------cCCeEEEEEcCcCCEEEEEECCCChhH-CEEEEEEE
Confidence 8775333899999843100 00111111110 0000 01233332 12469999999999 99999999
Q ss_pred ec
Q psy14542 195 VN 196 (371)
Q Consensus 195 ~~ 196 (371)
..
T Consensus 229 ~~ 230 (259)
T 3omz_A 229 GE 230 (259)
T ss_dssp ES
T ss_pred eC
Confidence 74
No 306
>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A
Probab=99.74 E-value=1.7e-17 Score=131.74 Aligned_cols=167 Identities=13% Similarity=0.167 Sum_probs=108.2
Q ss_pred eecCCcEEEEEEecCCC---CCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecC
Q psy14542 108 VDVGHRIELHCRVSPKR---LSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDES 184 (371)
Q Consensus 108 ~~~g~~v~l~C~~~~~~---~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~ 184 (371)
+.+|++++|.|.+.+.+ ....+.|++++..+...... .. .....| ++. ..+.|.|.+++.+
T Consensus 15 v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~---~~--~~~~~~---------~~~--~~~~L~I~~~~~~ 78 (207)
T 2vol_A 15 LTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTK---PR--EEQFNS---------TFR--SVSELPIMHQDWL 78 (207)
T ss_dssp HSTTSCCEEEEEEEEECTTCCCCEEEEEETTEEECCCEEE---CC--CEETTT---------EEE--EEEEEECCHHHHH
T ss_pred hccCCceEEEEEEeCcccCCCceEEEEEECCccccccccC---CC--cCcCCC---------cEE--EEEEEEEehhHcC
Confidence 47899999999998774 33599999999765432100 00 000112 222 1257999999999
Q ss_pred CccceeEEEeeccccceeeeeecccee--eeecchhccccceeeeeeeeeeeecCCeEEEEEEeecC-CC-CceEEEeCC
Q psy14542 185 DRYRSYQCRGVNKLTGASLLSVNRGRL--SLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGN-PL-PTIKWYKQD 260 (371)
Q Consensus 185 d~~g~y~C~~~~~~~~~~~~~~~~~~l--~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-~~v~W~~~~ 260 (371)
| +|.|+|.+.+. .+...... ...+ .+. .+|.+...+.... ...|+.+.|.|.+.|. |+ +.+.|+++|
T Consensus 79 D-~G~Y~C~a~~~-~~~~~~~~-~v~~~~~~~-----~~P~v~~~~~~~~-~~~g~~~~L~C~~~g~~P~~~~v~W~k~g 149 (207)
T 2vol_A 79 N-GKEFKCRVNSA-AFPAPIEK-TISKTKGRP-----KAPQVYTLPPPKE-QMAKDKVSLTCMITDFFPEDITVEWESNG 149 (207)
T ss_dssp T-TCCEEEEEECT-TCSSCEEE-EECCCCCCC-----BCCEEEEECCCTG-GGSSSEEEEEEEEEEEBSSCCEEEEEETT
T ss_pred C-CCEEEEEEEcc-CCCCceEE-EeccCCCCC-----cCCeEEEeCCCHH-HhcCCceEEEEEEeeEECCCCEEEEEECC
Confidence 9 99999999987 44321111 0022 223 5666655444333 3458999999999984 55 489999999
Q ss_pred cccccCCc--eE-Eecc------eEEEeccCCCCCeEEEEEEEcCCCC
Q psy14542 261 SPVEESDR--IQ-RIGS------SLSISHVEESDSGVWNCVANNSEGQ 299 (371)
Q Consensus 261 ~~~~~~~~--~~-~~~~------~l~i~~~~~~d~G~Y~C~a~n~~g~ 299 (371)
..+..... .. ..++ .|.|.....+|.|.|+|.|.|....
T Consensus 150 ~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~ytC~a~n~~l~ 197 (207)
T 2vol_A 150 QPAENYKNTQPIMDTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHEGLH 197 (207)
T ss_dssp EECSCEEECCCEECTTSCEEEEEEEEEEHHHHSSCCEEEEEEECTTSG
T ss_pred EeccCcccCCceECCCCCEEEEEEEEECHHHcCCCCEEEEEEECCCCC
Confidence 87754321 11 1122 3566666667899999999998754
No 307
>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H
Probab=99.74 E-value=2.6e-16 Score=127.13 Aligned_cols=194 Identities=13% Similarity=0.140 Sum_probs=111.7
Q ss_pred CceeeecCCcEEEEEEecCCC-CCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEec-----cceEE
Q psy14542 104 NQVVVDVGHRIELHCRVSPKR-LSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLS-----SGELI 177 (371)
Q Consensus 104 ~~~~~~~g~~v~l~C~~~~~~-~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~-----~~~l~ 177 (371)
+...+.+|++++|.|.+.+.+ ....+.|++.... ......+...... ...+ .....+++.+.. +..|.
T Consensus 8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~--~~~~~l~~~~~~~---~~~~-~~~~~~R~~~~~~~~~~~~~L~ 81 (232)
T 1dn0_B 8 GAGLLKPSETLSLTCAVYGGSFSDYYWSWIRQPPG--KGLEWIGEINHSG---STNY-NPSLKSRVTISVDTSKNQFSLK 81 (232)
T ss_dssp CCCEECTTSCEEEEEEEESSCCSSCCEEEEEECTT--SCCEEEEEECTTC---CEEE-CTTTTTTEEEEEETTTTEEEEE
T ss_pred CCEEEeCCCcEEEEEEEccccCCCceEEEEEeCCC--CCeEEEEEEecCC---ceee-CCccCCeEEEEEeCCCCEEEEE
Confidence 344558999999999998754 2378999985310 0001111111100 0000 000012333331 24799
Q ss_pred EEEeecCCccceeEEEeecccc-ce----eeeeeccceeeeecchhccccceeeeeeeeeeeecC-CeEEEEEEeecC-C
Q psy14542 178 IHQVDESDRYRSYQCRGVNKLT-GA----SLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKD-ESVILPCSAQGN-P 250 (371)
Q Consensus 178 i~~~~~~d~~g~y~C~~~~~~~-~~----~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g-~~~~l~C~~~~~-p 250 (371)
|.+++.+| +|.|.|.+.+... +. ..... .|.|..... .+|.+........ +..| +.++|.|.+.+. |
T Consensus 82 I~~v~~~D-~G~Y~C~~~~~~~~~~~~~~~~~~~---~L~V~~~~~-~~P~v~~~~p~~~-~~~g~~~v~L~C~~~g~~P 155 (232)
T 1dn0_B 82 LSSVTAAD-TAVYYCARPPHDTSGHYWNYWGQGT---LVTVSSGSA-SAPTLFPLVSCEN-SPSDTSSVAVGCLAQDFLP 155 (232)
T ss_dssp ECSCCGGG-CEEEEEEECSSTTSCSCCSEECCCE---EEEECSSCC-BCCEEEEEECC-------CCSEEEEEEEEEEBS
T ss_pred ECCCCccc-CEEEEEEEecCCcCCchhhhcccce---EEEEccCCC-CCCceEEeccccc-cCCCCCcEEEEEEEEEEeC
Confidence 99999999 9999999984201 11 11222 666663211 3344443222222 5578 999999999875 7
Q ss_pred CC-ceEEEe-CCcccccC--------CceEEecceEEEeccCC--CCCeEEEEEEEcCCCCceeEEEEEEe
Q psy14542 251 LP-TIKWYK-QDSPVEES--------DRIQRIGSSLSISHVEE--SDSGVWNCVANNSEGQDKMQLFIQYA 309 (371)
Q Consensus 251 ~~-~v~W~~-~~~~~~~~--------~~~~~~~~~l~i~~~~~--~d~G~Y~C~a~n~~g~~~~~~~l~v~ 309 (371)
.+ .+.|++ +|..+... .......+.|.|..... +|.|.|+|.|.|..+.......+.|.
T Consensus 156 ~p~~v~W~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~ytC~v~n~~~~~~~~~~i~~~ 226 (232)
T 1dn0_B 156 DSITFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVMAGTDEHVVCKVQHPNGNKEKNVPLPVI 226 (232)
T ss_dssp SCCEEEEEETTSCEECCEEECCCEEETTEEEEEEEEEECTTCC---CCCEEEEEEECTTCCEEEEEECCC-
T ss_pred CCeEEEEEcCCCCceeeEEECCccccCCcEEEEEEEEEcHHHhcccCCCeEEEEEEeCCCCcceeEecCCC
Confidence 76 899999 88766430 01112234688888876 78999999999999987666655544
No 308
>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*
Probab=99.74 E-value=1.9e-16 Score=128.82 Aligned_cols=173 Identities=18% Similarity=0.209 Sum_probs=106.6
Q ss_pred eeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcc-cCcCCCeeEEEEEeCCceeEe---ccceEEEEEe
Q psy14542 106 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDR-VQREDAGMYQCHIEDGKYHML---SSGELIIHQV 181 (371)
Q Consensus 106 ~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~-~~~~~~g~y~~~~~~~~~~~~---~~~~l~i~~~ 181 (371)
..+.+|++++|.|.+.+.+. +.+.|+++.... .....+.... ......+ ++.+. ....|.|.++
T Consensus 11 ~~v~~G~~v~L~C~~~~~~~-~~v~W~k~~~~~--~~~~~~~~~~~~~~~~~~---------r~~~~~~~~~~~L~I~~v 78 (242)
T 2znx_A 11 LSVTPGNSVSLSCRASQSIG-NNLHXYQQKSHE--SPRLLIKYASQSISGIPS---------RFSGSGSGTDFTLSINSV 78 (242)
T ss_dssp EEECTTCCEEEEEEESSCCT-TCEEEEEECTTS--CCEEEEETTTEECTTSCT---------TEEEEEETTEEEEEESSC
T ss_pred EEEcCCCcEEEEEEeCCCCC-ceEEEEEeCCCC--CceEEEEeccccCCCCCC---------CEEEecCCCEEEEEECCC
Confidence 34589999999999988776 899999853100 0000000000 0000112 33222 1247999999
Q ss_pred ecCCccceeEEEeeccccce-eeeeeccceeeeecchh--------ccccceeeeeeeeeeeecCCeEEEEEEeecCC--
Q psy14542 182 DESDRYRSYQCRGVNKLTGA-SLLSVNRGRLSLTENKR--------LLSAAKMFEKHRILNVKKDESVILPCSAQGNP-- 250 (371)
Q Consensus 182 ~~~d~~g~y~C~~~~~~~~~-~~~~~~~~~l~v~~~~~--------~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p-- 250 (371)
+.+| +|.|.|.+.+. .+. ..... .|.|..... ..++.....+.... +.+|++++|.|.+.+.+
T Consensus 79 ~~~D-~G~Y~C~~~n~-~~~~~~~~~---~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~G~~v~L~C~~~g~~~~ 152 (242)
T 2znx_A 79 ETED-FGMYFCQQSNS-XPYTFGGGT---KLEITGGGGSGGGGSGGGGSDIQLQESGPSL-VKPSQTLSLTCSVTGDSIT 152 (242)
T ss_dssp CGGG-CEEEEEEECSS-SSCEECCCE---EEEEC---------------CCEEEEECCSE-ECTTSCEEEEEEEESSCGG
T ss_pred ChHH-CEEEEEeEecC-CceEECCCE---EEEEcCCCCCCcccccccccceeeecCCcce-ecCCCeEEEEEEEEccccC
Confidence 9999 99999999987 332 11222 566663211 00111222333344 89999999999999876
Q ss_pred CCceEEEeCC--cccc----------------cCCceEEe------cceEEEeccCCCCCeEEEEEEEcC
Q psy14542 251 LPTIKWYKQD--SPVE----------------ESDRIQRI------GSSLSISHVEESDSGVWNCVANNS 296 (371)
Q Consensus 251 ~~~v~W~~~~--~~~~----------------~~~~~~~~------~~~l~i~~~~~~d~G~Y~C~a~n~ 296 (371)
.+.+.|++++ ..+. ...++... ..+|.|.++..+|+|.|+|.|.|.
T Consensus 153 ~~~v~W~k~~~~~~~~~l~~~~~~g~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~ 222 (242)
T 2znx_A 153 SDYXSXIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVTTEDTATYYCANXDG 222 (242)
T ss_dssp GSCEEEEEECTTSCEEEEEEECTTSCEEECGGGTTCEEEEEETTTTEEEEEECSCCGGGCEEEEEEETTS
T ss_pred CcceeeEeeCCCCCcEEEEEEecCCccccCccccCcEEEEecCCCCEEEEEECCCCcCcCEEEEEeccCC
Confidence 4789999853 3221 12344422 137999999999999999999984
No 309
>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...
Probab=99.74 E-value=7.9e-18 Score=133.62 Aligned_cols=169 Identities=13% Similarity=0.179 Sum_probs=102.9
Q ss_pred ceEEEeCCCcEE-EeccCcEEEEEEecCCCC---CCeeEEEeCCEEEeeC--------CeeEEE------EccCCcCCCe
Q psy14542 11 LSIEMSPSGQVV-VDVGHRIELHCRVSPKRL---SSAKAWLKDGLVLRRN--------SDEVLV------LDRVQREDAG 72 (371)
Q Consensus 11 ~~~~~~p~~~~~-~~~G~~v~l~C~~~~~~~---~~~~~W~~~~~~~~~~--------~~~~l~------i~~~~~~d~G 72 (371)
|.+.+.|+.... +.+|+.++|.|.+....| ...+.|+|++..+... .++.|. |.....+|+|
T Consensus 2 P~v~~~pps~~~~~~~G~~v~L~C~~~g~~p~~~~~~v~W~k~~~~~~~~~~~~~~~~~~g~~~~~~~l~i~~~d~~d~g 81 (207)
T 1l6x_A 2 PSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGK 81 (207)
T ss_dssp CEEEEECCCHHHHHCTTSCCEEEEEEEEECSSSCCCEEEEEETTEEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTC
T ss_pred CeEEEeCcChHHheecCCceEEEEEEecccCCCCCeEEEEEECCccccCcccCCceeccCCcEEEEEEEEEEHHHccCCc
Confidence 567777776223 379999999997664333 4589999999876432 122333 3333344599
Q ss_pred EEEEEEEcCCCCeEEEEEE----EEecceeeEecCCce-eeecCCcEEEEEEecCCCC-CceEEEeeCCEEeeeCCeeEE
Q psy14542 73 MYQCHVSADDDSAQMSAQV----ILGGELVEIASSNQV-VVDVGHRIELHCRVSPKRL-SSAKAWLKDGLVLRRNSDEVL 146 (371)
Q Consensus 73 ~Y~C~~~~~~~~~~~~~~l----~v~~~~~~~~~~~~~-~~~~g~~v~l~C~~~~~~~-~~~v~W~~~~~~~~~~~~~~~ 146 (371)
.|+|.+.+..+.......+ .+. .+|.+...+.. ....|..++|.|.+.+.++ ++.++|+++|..+.....
T Consensus 82 ~Y~C~a~n~~~~~~~~~~v~~~~~~~-~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~--- 157 (207)
T 1l6x_A 82 EYKCKVSNKALPAPIEKTISKAKGQP-REPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKT--- 157 (207)
T ss_dssp CEEEEEECTTSSSCEEEEECCCCSCC-BCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEE---
T ss_pred eEEEEEEcCcCCcceEEEeccCCCCC-cCCEEEEECCChHHhcCCcEEEEEEEeCeECCCeEEEEEECCeeccCccc---
Confidence 9999999887654333233 222 33443322221 1134667999999988543 359999999987753211
Q ss_pred EEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeecc
Q psy14542 147 VLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNK 197 (371)
Q Consensus 147 ~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~ 197 (371)
........|.| .+. +.|.|......| .|.|+|.+.|.
T Consensus 158 --~~~~~~~~gt~---------~~~--s~l~i~~~~~~~-~g~YtC~a~n~ 194 (207)
T 1l6x_A 158 --TPPVLDSDGSF---------FLY--SKLTVDKSRWQQ-GNVFSCSVMHE 194 (207)
T ss_dssp --CCCEECTTSCE---------EEE--EEEEEEHHHHHT-TCCEEEEEECT
T ss_pred --cCceECCCCCE---------EEE--EEEEECHHHcCC-CCEEEEEEEcC
Confidence 01111222322 221 456666666677 99999999997
No 310
>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine; HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*
Probab=99.74 E-value=1.3e-17 Score=134.77 Aligned_cols=202 Identities=15% Similarity=0.214 Sum_probs=107.8
Q ss_pred eEEEEEEEcCCCCeEEEEEEEEecceeeEecCCc-ee-eecCCcEEEEEEecCCC---CCceEEEeeCCEEeeeCCeeEE
Q psy14542 72 GMYQCHVSADDDSAQMSAQVILGGELVEIASSNQ-VV-VDVGHRIELHCRVSPKR---LSSAKAWLKDGLVLRRNSDEVL 146 (371)
Q Consensus 72 G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~-~~-~~~g~~v~l~C~~~~~~---~~~~v~W~~~~~~~~~~~~~~~ 146 (371)
|.|.|.+.+..+. ......+. .+......+. .. +..|+.++|.|.+.+.. .+..++|+++|..+......
T Consensus 1 ~~~~~~~~~~~~~--c~~~~~~~-~P~v~i~~ps~~~~l~~g~~~~L~C~v~g~~p~P~~i~v~W~k~g~~l~~~~~~-- 75 (240)
T 4acp_A 1 GTKSCDKTHTCPP--CPAPELLG-GPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTK-- 75 (240)
T ss_dssp -------------------------CEEEEECCCHHHHHSSSSCCEEEEEEESCCC--CCCEEEEEETTEEECCCEEC--
T ss_pred CceeeeeeecCCC--CCccccCC-CCEEEEECcChHHhcccCCCcEEEEEEeccccCCCccEEEEEECCcccCCceec--
Confidence 7899998876543 11111111 2222222222 22 34699999999999875 24689999999987543110
Q ss_pred EEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceee
Q psy14542 147 VLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMF 226 (371)
Q Consensus 147 ~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~ 226 (371)
.......| .+... +.|.|.....+| .|.|+|.+.+. .+...... .+.... ....+|.+..
T Consensus 76 ---~~~~~~~g---------~~~~~--s~L~i~~~~~~d-~~~YtC~v~h~-~~~~~~~~---~i~~~~-~~~~~P~V~v 135 (240)
T 4acp_A 76 ---PREEQYNS---------TYRVV--SVLTVLHQDWLN-GKEYKCKVSNK-ALPAPIEK---TISKAK-GQPREPQVYT 135 (240)
T ss_dssp ---CCEEC------------CEEEE--EEEECCHHHHHH-TCCEEEEEECC-----CEEE---EECCCC-SCCBCCEEEE
T ss_pred ---cceECCCC---------eEEEE--EEEEEechhccC-CCEEEEEEEcC-CCCccccc---cccccC-CCCCCCEEEE
Confidence 00011122 33322 567787777778 89999999987 44221221 221100 0115666666
Q ss_pred eeeeeeeeecCCeEEEEEEeec-CCCC-ceEEEeCCcccccCCc--e-------EEecceEEEeccCCCCCeEEEEEEEc
Q psy14542 227 EKHRILNVKKDESVILPCSAQG-NPLP-TIKWYKQDSPVEESDR--I-------QRIGSSLSISHVEESDSGVWNCVANN 295 (371)
Q Consensus 227 ~~~~~~~~~~g~~~~l~C~~~~-~p~~-~v~W~~~~~~~~~~~~--~-------~~~~~~l~i~~~~~~d~G~Y~C~a~n 295 (371)
.+.... ...|+.+.|.|.+.+ +|.+ .+.|+++|..+..... . ....+.|.|......|.|.|+|+|.+
T Consensus 136 ~~~~~~-~~~g~~~~L~C~~~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~~~~ytC~V~h 214 (240)
T 4acp_A 136 LPPSRD-ELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKATPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMH 214 (240)
T ss_dssp ECCCGG-GGGSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEEC
T ss_pred ECCChH-HhcCCceEEEEEEeEEeCCCcEEEEEECCEECCCcCccCceECCCCCEEEEEEEEEChHHhCCCCEEEEEEEE
Confidence 554433 345899999999998 5553 7999999987643211 1 11223567776666789999999998
Q ss_pred CCCC
Q psy14542 296 SEGQ 299 (371)
Q Consensus 296 ~~g~ 299 (371)
..-.
T Consensus 215 ~~l~ 218 (240)
T 4acp_A 215 EALH 218 (240)
T ss_dssp TTSG
T ss_pred CCCC
Confidence 7643
No 311
>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}
Probab=99.74 E-value=1.9e-16 Score=130.09 Aligned_cols=180 Identities=17% Similarity=0.237 Sum_probs=106.5
Q ss_pred CceeeecCCcEEEEEEecCC--CCCceEEEeeCCEEeeeCCeeEEEEcccC---cCCCeeEEEEEeCCceeEeccceEEE
Q psy14542 104 NQVVVDVGHRIELHCRVSPK--RLSSAKAWLKDGLVLRRNSDEVLVLDRVQ---REDAGMYQCHIEDGKYHMLSSGELII 178 (371)
Q Consensus 104 ~~~~~~~g~~v~l~C~~~~~--~~~~~v~W~~~~~~~~~~~~~~~~~~~~~---~~~~g~y~~~~~~~~~~~~~~~~l~i 178 (371)
+...+.+|++++|.|.+.+. +. +.+.|+|.... ....+.+.... ....+.|...... ....|.|
T Consensus 10 ~~~~v~~G~~v~L~C~~~~~~~~~-~~v~W~r~~~~----~~~~~~~~~~~~~~~~~~~r~~~~~~~------~~~~L~I 78 (256)
T 3ux9_B 10 PSVSGAPGQRVTISCSGSSSNIGS-NYVSWYQQLPG----TAPKLLIYDNNQRPSGVPDRFSGSKSG------TSASLAI 78 (256)
T ss_dssp SEEEECTTCCEEEEEECCTTTTTT-SCCEEEEECTT----SCCEEEEBTTTBCCTTCCTTEEEEEET------TEEEEEE
T ss_pred CcEEEcCCCcEEEEEecCCCCCCC-ceEEEEEECCC----CCCEEEEEecCCCCCCcCCcEEEEccC------CEEEEEE
Confidence 34455899999999999876 44 78999984310 00011111100 0111222211110 1247999
Q ss_pred EEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccc---------------cceeeeeeeeeeeecCCeEEEE
Q psy14542 179 HQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLS---------------AAKMFEKHRILNVKKDESVILP 243 (371)
Q Consensus 179 ~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~---------------p~~~~~~~~~~~~~~g~~~~l~ 243 (371)
.+++.+| +|.|.|.+.+. .+..........|.|.......+ +.....+.... +.+|++++|.
T Consensus 79 ~~v~~~D-sG~Y~C~~~~~-~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~G~~v~L~ 155 (256)
T 3ux9_B 79 TGLQSED-EADYYCQVRDN-NENEWVFGGGTKLTVLGSGGSTITSYNVYYTKLSSSGSEVQLVESGGGL-VQPGGSLRLS 155 (256)
T ss_dssp CSCCGGG-CEEEEEEEEET-TTTEEEECCCEEEEEC----------------------CCEEEEECCEE-ECTTCCEEEE
T ss_pred CCCChhh-CEEEEEEEEEC-CCCceEECCCEEEEEECCCCCcCccceeEEeecCCCccceeEEcCCCeE-EcCCCeEEEE
Confidence 9999999 99999999885 32111111122566663221000 11122233334 8899999999
Q ss_pred EEeecCC--CCceEEEeCC--cccc-----------------cCCceEEe------cceEEEeccCCCCCeEEEEEEEcC
Q psy14542 244 CSAQGNP--LPTIKWYKQD--SPVE-----------------ESDRIQRI------GSSLSISHVEESDSGVWNCVANNS 296 (371)
Q Consensus 244 C~~~~~p--~~~v~W~~~~--~~~~-----------------~~~~~~~~------~~~l~i~~~~~~d~G~Y~C~a~n~ 296 (371)
|.+.+.+ .+.+.|+++. ..+. ...++... ..+|.|.++..+|+|.|+|.|.|.
T Consensus 156 C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~ 235 (256)
T 3ux9_B 156 CAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARYID 235 (256)
T ss_dssp EEEESSCGGGSEEEEEEECTTCCEEEEEEECSSSSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEET
T ss_pred EEEeCCcccccEEEEEEECCCCCcEEEEEEccCCCceecCccccceEEEEecCCCCEEEEEECCCChhhCEEEEEEEEcC
Confidence 9999876 6789999863 2220 11233321 125999999999999999999996
Q ss_pred C
Q psy14542 297 E 297 (371)
Q Consensus 297 ~ 297 (371)
.
T Consensus 236 ~ 236 (256)
T 3ux9_B 236 F 236 (256)
T ss_dssp T
T ss_pred C
Confidence 4
No 312
>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A
Probab=99.73 E-value=3.6e-17 Score=133.09 Aligned_cols=170 Identities=13% Similarity=0.186 Sum_probs=108.8
Q ss_pred ceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEe--------------CCEEEee-------------CCeeEEEE
Q psy14542 11 LSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLK--------------DGLVLRR-------------NSDEVLVL 63 (371)
Q Consensus 11 ~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~--------------~~~~~~~-------------~~~~~l~i 63 (371)
+.+...|.. +.+.+|++++|.|.+. + +.+.+.|+| ++..... ....+|.|
T Consensus 3 ~~v~~~p~~-v~v~~G~~v~L~C~~~-~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I 79 (240)
T 3q5y_A 3 SGVVQSPRH-IIKEKGGRSVLTCIPI-S-GHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNM 79 (240)
T ss_dssp CCCEEECSE-EEEETTCCEEEEEECC-T-TCCEEEEEEECTTSCCEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEE
T ss_pred cccccCcce-eeecCCCcEEEEEEeC-C-CCceEEEEEECCCCCCEEEEEEcCCccccCcccCCeEEEEeCCCCEEEEEE
Confidence 345566666 8899999999999654 3 667899998 2221111 14568999
Q ss_pred ccCCcCCCeEEEEEEEcCCC---CeEEEEEEEEec-----ceeeEec-CCc-eeeecCCcEEEEEEecCC-CCCceEEEe
Q psy14542 64 DRVQREDAGMYQCHVSADDD---SAQMSAQVILGG-----ELVEIAS-SNQ-VVVDVGHRIELHCRVSPK-RLSSAKAWL 132 (371)
Q Consensus 64 ~~~~~~d~G~Y~C~~~~~~~---~~~~~~~l~v~~-----~~~~~~~-~~~-~~~~~g~~v~l~C~~~~~-~~~~~v~W~ 132 (371)
.+++.+|+|.|.|.+.+..+ .......|.|.. .+|.+.. .+. ..+..|+.++|.|.+.+. |.+..+.|+
T Consensus 80 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~ 159 (240)
T 3q5y_A 80 SALELEDSAMYFCASSLRWGDEQYFGPGTRLTVLEDLRNVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWW 159 (240)
T ss_dssp CSCCGGGCEEEEEEEESSTTBCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEE
T ss_pred CcCChhHCEEEEEEEccCCCcceEEcCCEEEEEeccccCCCCCeeEEeCCchhhcccCCceEEEEEEeeEECCCeEEEEE
Confidence 99999999999999973211 122334566552 2333332 222 123568999999999884 443489999
Q ss_pred eCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeecc
Q psy14542 133 KDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNK 197 (371)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~ 197 (371)
++|..+....... ........| .+.+. +.|.|.....+|+.|.|+|.+.+.
T Consensus 160 ~~g~~l~~~~~~~---~~~~~~~~g---------~~~~~--s~L~i~~~~~~d~~g~YtC~v~~~ 210 (240)
T 3q5y_A 160 VNGKEVHSGVSTD---PQAYKESNY---------SYSLS--SRLRVSATFWHNPRNHFRCQVQFH 210 (240)
T ss_dssp ETTEEECTTEEEC---SSCEEEETT---------EEEEE--EEEEEEHHHHSCTTCEEEEEEEEC
T ss_pred ECCEECcCcEecC---CceeeCCCC---------CEEEE--EEEEECHHHhccCCCEEEEEEEcC
Confidence 9999876532110 000111122 22222 568899888887455999999987
No 313
>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D
Probab=99.73 E-value=8.1e-17 Score=131.40 Aligned_cols=173 Identities=16% Similarity=0.197 Sum_probs=110.1
Q ss_pred ceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEe--------------CCEEEee--------------CCeeEEE
Q psy14542 11 LSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLK--------------DGLVLRR--------------NSDEVLV 62 (371)
Q Consensus 11 ~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~--------------~~~~~~~--------------~~~~~l~ 62 (371)
+.+...|.. +.+.+|++++|.| . .+.+...+.|+| ++..... ....+|.
T Consensus 3 ~~v~~~p~~-v~v~~G~~v~L~C-~-~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~ 79 (245)
T 4ei6_B 3 PKVLQIPSH-QIIDMGQMVTLNC-D-PVSNHLYFYWYKQILGQQMEFLVNFYNGKVMEKSKLFKDQFSVERPDGSYFTLK 79 (245)
T ss_dssp CCCEEECSE-EEEETTCCEEEEE-E-CCTTCCEEEEEEEETTTEEEEEEEEETTEEEEECTTCCTTEEEECCTTSCEEEE
T ss_pred cceEeCCce-EEecCCCCEEEEE-E-cCCCCCEEEEEEECCCCCcEEEEEECCCceeccCCCccCCEEEEeccCceEEEE
Confidence 445666666 8899999999999 3 345678899998 2221111 0355899
Q ss_pred EccCCcCCCeEEEEEEEcCC----CCeEEEEEEEEec-----ceeeEec-CCc-eeeecCCcEEEEEEecCCCC-CceEE
Q psy14542 63 LDRVQREDAGMYQCHVSADD----DSAQMSAQVILGG-----ELVEIAS-SNQ-VVVDVGHRIELHCRVSPKRL-SSAKA 130 (371)
Q Consensus 63 i~~~~~~d~G~Y~C~~~~~~----~~~~~~~~l~v~~-----~~~~~~~-~~~-~~~~~g~~v~l~C~~~~~~~-~~~v~ 130 (371)
|.+++.+|+|.|.|.+.+.. ........|.|.. .+|.+.. .+. ..+.+|+.++|.|.+.+.++ +..+.
T Consensus 80 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~ 159 (245)
T 4ei6_B 80 IQPTALEDSAVYFCASSFWGAYAEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELS 159 (245)
T ss_dssp ECSCCGGGCEEEEEEEECSSTTCCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEE
T ss_pred ECCCCHhHCEEEEEEEccCCCcceEEEcCCcEEEEecccCCCCCceEEEeCCCcccccCCCceEEEEEEeeEeCCCeEEE
Confidence 99999999999999998532 1122334566652 2333322 222 22356999999999988544 24899
Q ss_pred EeeCCEEeeeCCeeEE-EEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeecc
Q psy14542 131 WLKDGLVLRRNSDEVL-VLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNK 197 (371)
Q Consensus 131 W~~~~~~~~~~~~~~~-~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~ 197 (371)
|+++|..+........ ..........|.|. .. +.|.|.....+|+.|.|+|.+.+.
T Consensus 160 W~~~g~~l~~~~~~~~~~~~~~~~~~~g~~~---------~~--s~L~i~~~~~~d~~g~ytC~v~~~ 216 (245)
T 4ei6_B 160 WWVNGKEVHSGVCTDPQPLKEQPALNDSRYA---------LS--SRLRVSATFWQNPRNHFRCQVQFY 216 (245)
T ss_dssp EEETTEEECTTEEECSSCEESSTTSTTCCEE---------EE--EEEEEEHHHHSCTTCEEEEEEEEC
T ss_pred EEECCEECCCCcccccccccccccCCCCCEE---------EE--EEEEEcHHHhccCCCeEEEEEEEC
Confidence 9999998865421100 00011111233332 21 567888777665478999999987
No 314
>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1
Probab=99.73 E-value=2.6e-16 Score=131.11 Aligned_cols=170 Identities=17% Similarity=0.292 Sum_probs=108.0
Q ss_pred EEeCCCcEEEeccCcEEEEEEecCCC-CCCeeEEEeCC--E--E-Ee---------------eC----------CeeEEE
Q psy14542 14 EMSPSGQVVVDVGHRIELHCRVSPKR-LSSAKAWLKDG--L--V-LR---------------RN----------SDEVLV 62 (371)
Q Consensus 14 ~~~p~~~~~~~~G~~v~l~C~~~~~~-~~~~~~W~~~~--~--~-~~---------------~~----------~~~~l~ 62 (371)
...|.. ..+.+|++++|.|.+.... +.+.+.|+|++ . . +. .. ...+|.
T Consensus 30 ~~~p~~-~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~ 108 (282)
T 1qok_A 30 LQQSGA-ELVRSGTSVKLSCTASGFNIKDSYMHWLRQGPEQGLEWIGWIDPENGDTEYAPKFQGKATFTTDTSSNTAYLQ 108 (282)
T ss_dssp EEECCC-EEEETTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEE
T ss_pred EECCCC-EEEeCCCeEEEEEeccCCCCCCceEEEEEeCCCCCcEEEEEEecCCCccccCchhcCcEEEEEecCCCeEEEE
Confidence 445666 8999999999999754322 35789999943 1 1 10 00 246899
Q ss_pred EccCCcCCCeEEEEEEEcCCC---Ce--EEEEEEEEecc--------------eeeEecCCc-eeeecCCcEEEEEEecC
Q psy14542 63 LDRVQREDAGMYQCHVSADDD---SA--QMSAQVILGGE--------------LVEIASSNQ-VVVDVGHRIELHCRVSP 122 (371)
Q Consensus 63 i~~~~~~d~G~Y~C~~~~~~~---~~--~~~~~l~v~~~--------------~~~~~~~~~-~~~~~g~~v~l~C~~~~ 122 (371)
|.+++.+|+|.|.|.+.+..+ .. ...+.|.|... ++.+...+. ..+.+|++++|.|.+.+
T Consensus 109 I~~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~ 188 (282)
T 1qok_A 109 LSSLTSEDTAVYYCNEGTPTGPYYFDYWGQGTTVTVSSGGGGSGGGGSGGGGSENVLTQSPAIMSASPGEKVTITCSASS 188 (282)
T ss_dssp ECSCCGGGCEEEEEEEECSSSSCCCEEECCCEEEEEEC---------------CCCEEEECSEEEECTTCCEEEEEEESS
T ss_pred ECcCChhhCEEEEEEeccCCCccceeeeCCCEEEEEecCCcccCCccCCCCccceEEecCCCEEEEcCCCcEEEEEEecC
Confidence 999999999999999998765 11 12346677632 123333333 34589999999999988
Q ss_pred CCCCceEEEee--CCEEeeeCCeeEEEEcc-cCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeecc
Q psy14542 123 KRLSSAKAWLK--DGLVLRRNSDEVLVLDR-VQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNK 197 (371)
Q Consensus 123 ~~~~~~v~W~~--~~~~~~~~~~~~~~~~~-~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~ 197 (371)
.+ +.+.|+| ++..+.. ...... ......+.|..... .....|+|.+++.+| +|.|+|.+.+.
T Consensus 189 ~~--~~v~W~k~~~g~~~~~----~~~~~~~~~~~~~~r~~~~~~------~~~~~L~I~~v~~~D-sG~Y~C~a~~~ 253 (282)
T 1qok_A 189 SV--SYMHWFQQKPGTSPKL----WIYSTSNLASGVPARFSGSGS------GTSYSLTISRMEAED-AATYYCQQRSS 253 (282)
T ss_dssp CC--SCCEEEEECTTSCCEE----EEETTTEECTTCCTTEEEEEE------TTEEEEEESSCCGGG-CEEEEEEECSS
T ss_pred CC--ceEEEEEECCCCCcEE----EEEEecCCCCcccCCeEEecC------CCEEEEEEccCChhH-CEEEEEEEeeC
Confidence 77 5899999 4443211 000000 00001111211100 122579999999999 99999999875
No 315
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}
Probab=99.72 E-value=2.2e-16 Score=126.10 Aligned_cols=185 Identities=15% Similarity=0.226 Sum_probs=123.3
Q ss_pred ceeeEecCCceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccce
Q psy14542 96 ELVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGE 175 (371)
Q Consensus 96 ~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~ 175 (371)
.+|.+.......+.+|+.+.|.|.+.+.|. +.+.|++++..+.......+.+.. . .....
T Consensus 18 ~~P~~~~p~~~~~~~G~~v~l~C~~~g~p~-p~i~W~~~g~~l~~~~~~~~~~~~-------------~------~~~~~ 77 (215)
T 3mtr_A 18 YAPKLQGPVAVYTWEGNQVNITCEVFAYPS-ATISWFRDGQLLPSSNYSNIKIYN-------------T------PSASY 77 (215)
T ss_dssp EEEEEECCSEEEECTTCCEEEEEEEEEESC-CEEEEEETTEESSCSSSCSEEEEE-------------E------TTEEE
T ss_pred cCCcccCCceEEEECCCCEEEEEEEeecCC-CEEEEEECCeECCCCCCccEEEec-------------C------CCeeE
Confidence 456665444444589999999999999888 899999999987655311111100 0 01368
Q ss_pred EEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeec----CCC
Q psy14542 176 LIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQG----NPL 251 (371)
Q Consensus 176 l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~----~p~ 251 (371)
|.|.++...| .|.|+|.+.|. .|...... .+.|.. +|........ ...+..+.|.|.... .|.
T Consensus 78 L~i~~~~~~d-~G~Y~C~a~n~-~g~~~~~~---~l~v~~-----~P~~p~~~~~---~~~~~~~~l~w~~p~~~~~~pi 144 (215)
T 3mtr_A 78 LEVTPDSEND-FGNYNCTAVNR-IGQESLEF---ILVQAD-----TPSSPSIDQV---EPYSSTAQVQFDEPEATGGVPI 144 (215)
T ss_dssp EEECCCSGGG-CEEEEEEEECS-SCEEEEEE---EEEECC-----CCCCCEEEEE---EEETTEEEEEEECCSCCCSSCE
T ss_pred EEEecCChhh-CeEEEEEEEEC-CCceEEEE---EEEECC-----CCCCCcceEE---EEecceEEEEEecCCccCCCce
Confidence 9999999999 99999999999 77766666 777763 3322211111 234677888887422 233
Q ss_pred C--ceEEEeCCcccccCCceE----EecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEecCcc
Q psy14542 252 P--TIKWYKQDSPVEESDRIQ----RIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKY 313 (371)
Q Consensus 252 ~--~v~W~~~~~~~~~~~~~~----~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~ 313 (371)
. .+.|.+++...-...... .....|.|.++...+.|.|+|.|.|..|....+..+.+.-+|.
T Consensus 145 ~~y~v~~~~~~~~~w~~~~~~~~~~~~~~~l~i~~L~~~~~y~~~~~A~N~~G~s~~S~~~~v~T~p~ 212 (215)
T 3mtr_A 145 LKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQPV 212 (215)
T ss_dssp EEEEEEEEETTCCCCEEEEEEHHHHHHHTEEEEECCCTTCEEEEEEEEEESSCBCCCCCCEEEECCC-
T ss_pred EEEEEEEEECCCCcccccccccccccccccEEECCCCCCCEEEEEEEEEeCCcccCcccceeeEeccc
Confidence 2 378888775422211111 1126799999999999999999999999876666666655443
No 316
>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}
Probab=99.72 E-value=2.6e-18 Score=139.18 Aligned_cols=176 Identities=12% Similarity=0.178 Sum_probs=92.0
Q ss_pred ceeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEe---ccceEEEEEe
Q psy14542 105 QVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHML---SSGELIIHQV 181 (371)
Q Consensus 105 ~~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~---~~~~l~i~~~ 181 (371)
...+.+|++++|.|.+.+.+. +.+.|++++... .....+........+ + .+++... .+..|.|.++
T Consensus 32 ~~~v~~G~~v~L~C~~~~~~~-~~v~W~~~~~~~----~~~~~~~~~~~~~~~-~-----~~r~~~~~~~~~~~L~I~~v 100 (233)
T 3bqu_C 32 SLSMSIGEKVTIRCITSTDID-DDMNWYQQKPGE----PPRLLISDGNTLRPG-V-----PSRFSSSGYGTDFVFTIENM 100 (233)
T ss_dssp BC-------CCEEEEEEEEES-SCEEEEEECTTS----CCEEEECTTSCBCTT-S-----CTTCCCCEEEEEEEEC----
T ss_pred eEEEecCCCEEEEEecCCcCC-CeEEEEEECCCC----CcEEEEEcCCccCCC-C-----CccEEeeccCCEEEEEECCC
Confidence 334589999999999988765 689999853200 000111100000000 0 1122211 2247999999
Q ss_pred ecCCccceeEEEeecccccee-eeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecC-CCC-ceEEEe
Q psy14542 182 DESDRYRSYQCRGVNKLTGAS-LLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGN-PLP-TIKWYK 258 (371)
Q Consensus 182 ~~~d~~g~y~C~~~~~~~~~~-~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~v~W~~ 258 (371)
+.+| +|.|.|.+.+. .+.. .... .+.|... ..+|.+...+.... +..|+.++|.|.+.|. |.+ .+.|++
T Consensus 101 ~~~D-~G~Y~C~~~~~-~~~~~~~~~---~l~V~~~--~~~p~v~~~~~~~~-~~~g~~v~L~C~~~g~~p~~~~v~W~k 172 (233)
T 3bqu_C 101 LSED-VADYYCLQSDN-LPYTFGGGT---NLEIKRA--DAAPTVSIFPPSSE-QLTSGGASVVCFLNNFYPKDINVKWKI 172 (233)
T ss_dssp -CCC-CSEEEEEECSS-SSCCBCCCC---BC---CC--CBCCEEEEECCCHH-HHHTTEEEEEEEEEEEBSSCEEEEEEE
T ss_pred CHHH-CEEEEEEEecC-CceeecCCE---EEEEeCC--CCCCEEEEeCCCHH-hhcCCceEEEEEEccccCCceEEEEEE
Confidence 9999 99999999886 3321 1122 4555421 13555555433333 4579999999999985 443 799999
Q ss_pred CCcccccC-Cce----------EEecceEEEeccCCCCCeEEEEEEEcCCCC
Q psy14542 259 QDSPVEES-DRI----------QRIGSSLSISHVEESDSGVWNCVANNSEGQ 299 (371)
Q Consensus 259 ~~~~~~~~-~~~----------~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~ 299 (371)
+|..+..+ ... ....+.|.|..+..+|+|.|+|.|.|....
T Consensus 173 ~g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~ 224 (233)
T 3bqu_C 173 DGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTST 224 (233)
T ss_dssp C-----CCEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCCEEEEEEEC---
T ss_pred CCeeCCCCceEecCCccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence 99876554 110 112246889999999999999999997654
No 317
>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C
Probab=99.72 E-value=3.4e-16 Score=129.02 Aligned_cols=181 Identities=18% Similarity=0.345 Sum_probs=113.5
Q ss_pred cccceEEEeCCCcEEEeccCcEEEEEEecCCCC------CCeeEEEeC--CE---EEe------------------eCCe
Q psy14542 8 KSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRL------SSAKAWLKD--GL---VLR------------------RNSD 58 (371)
Q Consensus 8 ~~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~------~~~~~W~~~--~~---~~~------------------~~~~ 58 (371)
..++.+...|.. +.+.+|++++|.|.+. +.+ .+.+.|+|+ +. .+. ....
T Consensus 3 ~~~~~v~q~p~~-v~v~~G~~v~L~C~~~-~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~ 80 (264)
T 2gjj_A 3 EADIVLTQTPSS-LPVSVGEKVTMTCKSS-QTLLYSNNQKNYLAWYQQKPGQSPKLLISWAFTRKSGVPDRFTGSGSGTD 80 (264)
T ss_dssp CCCCCEEEECSE-EEEETTCCEEEEEEES-SCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTE
T ss_pred ccccceEecCCe-EEecCCCcEEEEeEcC-CcccccccCCceEEEEEECCCCCcEEEEEecccCCCCCCccEEEecCCCE
Confidence 345677777877 8999999999999654 444 567999984 21 111 0134
Q ss_pred eEEEEccCCcCCCeEEEEEEEcCCCCe-EEEEEEEEecce-------------------eeEecCCceeeecCCcEEEEE
Q psy14542 59 EVLVLDRVQREDAGMYQCHVSADDDSA-QMSAQVILGGEL-------------------VEIASSNQVVVDVGHRIELHC 118 (371)
Q Consensus 59 ~~l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~v~~~~-------------------~~~~~~~~~~~~~g~~v~l~C 118 (371)
.+|.|.+++.+|+|.|.|.+.+..+.. .....|.|...+ ..+...+...+.+|++++|.|
T Consensus 81 ~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C 160 (264)
T 2gjj_A 81 FTLTIGSVKAEDLAVYYCQQYSNYPWTFGGGTRLEIKRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPEVVKTGASVKISC 160 (264)
T ss_dssp EEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEECC-------------------CCEEEECCCEEECTTCCEEEEE
T ss_pred EEEEECCCCHHHCEEEEEEEecCCccEecCCEEEEEEcCCcccccccccccccccccCcEEEeCCCCEEEcCCCcEEEEE
Confidence 689999999999999999998765422 223466666321 123333444568999999999
Q ss_pred EecCCCC-CceEEEeeCCEEeeeCCeeEEEEcccC------cCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeE
Q psy14542 119 RVSPKRL-SSAKAWLKDGLVLRRNSDEVLVLDRVQ------REDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQ 191 (371)
Q Consensus 119 ~~~~~~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~------~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~ 191 (371)
.+.+.+. .+.+.|+++... ......+.+.... ....+.+....... .....|.|.+++.+| +|.|.
T Consensus 161 ~~~~~~~~~~~v~W~r~~~g--~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~----~~~~~L~I~~v~~~D-sG~Y~ 233 (264)
T 2gjj_A 161 KASGYSFTGYFINWVKKNSG--KSPEWIGHISSSYATSTYNQKFKNKAAFTVDTS----SSTAFMQLNSLTSED-SADYY 233 (264)
T ss_dssp EEESSCGGGSEEEEEEECTT--SCCEEEEEEETTTCCEEECGGGTTTEEEEEETT----TTEEEEEECSCCGGG-CEEEE
T ss_pred EEeCCccCCeEEEEEEECCC--CCcEEEEEEeccCcccccCcccCCceEEEEcCC----CCEEEEEECcCCccc-CEEEE
Confidence 9987753 368999986310 0001111110000 00011111111000 013579999999999 99999
Q ss_pred EEeecc
Q psy14542 192 CRGVNK 197 (371)
Q Consensus 192 C~~~~~ 197 (371)
|.+.+.
T Consensus 234 C~a~n~ 239 (264)
T 2gjj_A 234 CVRSGN 239 (264)
T ss_dssp EEEECS
T ss_pred EEEecC
Confidence 999985
No 318
>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}
Probab=99.72 E-value=6e-18 Score=137.06 Aligned_cols=171 Identities=16% Similarity=0.235 Sum_probs=95.7
Q ss_pred cceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCC--EE---Eee----------C--------CeeEEEEccC
Q psy14542 10 SLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDG--LV---LRR----------N--------SDEVLVLDRV 66 (371)
Q Consensus 10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~--~~---~~~----------~--------~~~~l~i~~~ 66 (371)
++.+...|.. +.+.+|++++|.|.+. +.+.+.+.|+|++ .. +.. . ...+|.|.++
T Consensus 23 ~~~v~~~p~~-~~v~~G~~v~L~C~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v 100 (233)
T 3bqu_C 23 ETTVTQSPAS-LSMSIGEKVTIRCITS-TDIDDDMNWYQQKPGEPPRLLISDGNTLRPGVPSRFSSSGYGTDFVFTIENM 100 (233)
T ss_dssp CCCEEEECSB-C-------CCEEEEEE-EEESSCEEEEEECTTSCCEEEECTTSCBCTTSCTTCCCCEEEEEEEEC----
T ss_pred ceeEEEcCCe-EEEecCCCEEEEEecC-CcCCCeEEEEEECCCCCcEEEEEcCCccCCCCCccEEeeccCCEEEEEECCC
Confidence 4566666776 8899999999999654 4455679999842 11 110 0 2337999999
Q ss_pred CcCCCeEEEEEEEcCCCCe-EEEEEEEEec--ceeeEecCC-ceeeecCCcEEEEEEecCCCCC-ceEEEeeCCEEeeeC
Q psy14542 67 QREDAGMYQCHVSADDDSA-QMSAQVILGG--ELVEIASSN-QVVVDVGHRIELHCRVSPKRLS-SAKAWLKDGLVLRRN 141 (371)
Q Consensus 67 ~~~d~G~Y~C~~~~~~~~~-~~~~~l~v~~--~~~~~~~~~-~~~~~~g~~v~l~C~~~~~~~~-~~v~W~~~~~~~~~~ 141 (371)
+.+|+|.|.|.+.+..+.. .....|.|.. .+|.+...+ ......|+.++|.|.+.+.+++ ..+.|+++|..+...
T Consensus 101 ~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~ 180 (233)
T 3bqu_C 101 LSEDVADYYCLQSDNLPYTFGGGTNLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNG 180 (233)
T ss_dssp -CCCCSEEEEEECSSSSCCBCCCCBC---CCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCEEEEEEEC-----CC
T ss_pred CHHHCEEEEEEEecCCceeecCCEEEEEeCCCCCCEEEEeCCCHHhhcCCceEEEEEEccccCCceEEEEEECCeeCCCC
Confidence 9999999999998765432 2223455542 245444322 2222469999999999885442 489999999876543
Q ss_pred CeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeecc
Q psy14542 142 SDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNK 197 (371)
Q Consensus 142 ~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~ 197 (371)
.. ..........|.| .. .+.|.|.....+| .|.|+|.+.|.
T Consensus 181 ~~---~~~~~~~~~~~~~---------~~--~s~L~i~~~~~~d-~g~Y~C~a~n~ 221 (233)
T 3bqu_C 181 VL---NSWTDQDSKDSTY---------SM--SSTLTLTKDEYER-HNSYTCEATHK 221 (233)
T ss_dssp EE---EEECCCCTTTCCE---------EE--EEEEEEEHHHHHT-CCCEEEEEEEC
T ss_pred ce---EecCCccCCCCCE---------EE--EEEEEECHHHhCC-CCCEEEEEEeC
Confidence 11 0111111222322 11 2578899999999 99999999987
No 319
>3nfj_J T cell receptor beta chain; immunoglobulin family, immune system; 2.68A {Homo sapiens} PDB: 3hg1_E
Probab=99.72 E-value=1e-16 Score=130.83 Aligned_cols=173 Identities=16% Similarity=0.210 Sum_probs=109.7
Q ss_pred eEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeC--CEE---E-------------------e--eCCeeEEEEcc
Q psy14542 12 SIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKD--GLV---L-------------------R--RNSDEVLVLDR 65 (371)
Q Consensus 12 ~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~--~~~---~-------------------~--~~~~~~l~i~~ 65 (371)
++...|.. +.+.+|++++|.|.+. +.+.+.+.|+|. +.. + . .....+|.|.+
T Consensus 3 ~v~~~p~~-v~v~~G~~v~L~C~~~-~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~ 80 (245)
T 3nfj_J 3 TIHQWPAT-LVQPVGSPLSLECTVE-GTSNPNLYWYRQAAGRGLQLLFYSVGIGQISSEVPQNLSASRPQDRQFILSSKK 80 (245)
T ss_dssp EEEEECSE-EEEETTCCEEEEEEEE-SCSSCEEEEEEESTTSCEEEEEEESSTTCCBCSSCCSSEEEEEETTEEEEEESS
T ss_pred eeeCCCce-EEecCCCCEEEEEEec-CCCCceEEEEEECCCCCcEEEEEECCCcccCCccCCcEEEEecCCCEEEEEECC
Confidence 45556666 8899999999999664 557789999992 110 0 0 01456899999
Q ss_pred CCcCCCeEEEEEEEcCCC-----Ce-EEEEEEEEec-----ceeeEecC-Cce-eeecCCcEEEEEEecCC-CCCceEEE
Q psy14542 66 VQREDAGMYQCHVSADDD-----SA-QMSAQVILGG-----ELVEIASS-NQV-VVDVGHRIELHCRVSPK-RLSSAKAW 131 (371)
Q Consensus 66 ~~~~d~G~Y~C~~~~~~~-----~~-~~~~~l~v~~-----~~~~~~~~-~~~-~~~~g~~v~l~C~~~~~-~~~~~v~W 131 (371)
++.+|+|.|.|.+.+..+ .. .....|.|.. .+|.+... +.. .+..|+.++|.|.+.+. +++..+.|
T Consensus 81 v~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W 160 (245)
T 3nfj_J 81 LLLSDSGFYLCAWSVSVGAGVPTIYFGEGSWLTVVEDLNKVFPPEVAVFEPSEAEISHTQKATLVCLATGFFPDHVELSW 160 (245)
T ss_dssp CCGGGCEEEEEEEECCTTTSSCCCEECCCEEEEEESCGGGCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEEEE
T ss_pred CChhhCEEEEEEEeeccCCCceeEEECCCeEEEEEcccCCCCCCceEeecCCcccccCCCceEEEEEEccCcCCCEEEEE
Confidence 999999999999998321 11 2334566652 13333321 111 12459999999999885 43358999
Q ss_pred eeCCEEeeeCCeeEE-EEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeecc
Q psy14542 132 LKDGLVLRRNSDEVL-VLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNK 197 (371)
Q Consensus 132 ~~~~~~~~~~~~~~~-~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~ 197 (371)
+++|..+........ ..........|.|. . .+.|.|......|..|.|+|.+.+.
T Consensus 161 ~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~---------~--~s~L~i~~~~~~d~g~~YtC~v~~~ 216 (245)
T 3nfj_J 161 WVNGKEVHSGVCTDPQPLKEQPALNDSRYA---------L--SSRLRVSATFWQNPRNHFRCQVQFY 216 (245)
T ss_dssp EETTEEECTTEEECSSCEESSSSSTTCCEE---------E--EEEEEEEHHHHTCTTCEEEEEEEEC
T ss_pred EECCEECCCCcccccccccccccCCCCCEE---------E--EEEEEECHHHhccCCCeEEEEEEEC
Confidence 999998865421100 00011111233332 2 2568888887776355999999987
No 320
>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B
Probab=99.72 E-value=4.7e-16 Score=124.77 Aligned_cols=185 Identities=15% Similarity=0.195 Sum_probs=110.0
Q ss_pred ceeeecCCcEEEEEEecCCC-CCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEecc-----ceEEE
Q psy14542 105 QVVVDVGHRIELHCRVSPKR-LSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSS-----GELII 178 (371)
Q Consensus 105 ~~~~~~g~~v~l~C~~~~~~-~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~-----~~l~i 178 (371)
...+.+|++++|.|.+.+.+ ....+.|++.... ......+.+... .++...+......+++.+..+ ..|.|
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I 85 (221)
T 3m8o_H 9 GGLVQPGGSLKLSCAASGFTLSGSNVHWVRQASG--KGLEWVGRIKRN-AESDATAYAASMRGRLTISRDDSKNTAFLQM 85 (221)
T ss_dssp CEEECTTCCEEEEEEEESSCGGGSEEEEEEECTT--SCEEEEEEECCG-GGTTCEEECGGGTTSEEEEEEGGGTEEEEEE
T ss_pred CEEEcCCCCEEEEEEcccccccccEEEEEEECCC--CCcEEEEEEccc-ccCcccccCccccccEEEEecCCCCEEEEEE
Confidence 34568999999999998643 2378999984310 000111111110 000000000001234433322 36999
Q ss_pred EEeecCCccceeEEEeecccc-ceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeec-CCC--Cce
Q psy14542 179 HQVDESDRYRSYQCRGVNKLT-GASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQG-NPL--PTI 254 (371)
Q Consensus 179 ~~~~~~d~~g~y~C~~~~~~~-~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~--~~v 254 (371)
.+++.+| +|.|.|.+.+... ....... .+.|.... ..+|.+....... ...|+.++|.|.+.+ .|. +.+
T Consensus 86 ~~v~~~D-sG~Y~C~~~~~~~~~~~~~~~---~l~V~~~~-~~~p~v~~~~~~~--~~~g~~v~L~C~~~~~~P~~~~~v 158 (221)
T 3m8o_H 86 NSLKSDD-TAMYYCVIRGDVYNRQWGQGT---LVTVSSAS-PTSPKVFPLSLCS--TQPDGNVVIACLVQGFFPQEPLSV 158 (221)
T ss_dssp CSCCGGG-CEEEEEEEESCTTCCCBBCCE---EEEECSCC-CBCCEEEEEECCS--CCCTTEEEEEEEEEEEBSSCSEEE
T ss_pred CCCCHHH-CEEEEEEEECCChhheECCCE---EEEEecCC-CCCCeEEEecCcc--cccCCCEEEEEEEEeeECCCCEEE
Confidence 9999999 9999999987611 1222222 55554211 1344443222111 267999999999998 665 489
Q ss_pred EEEeCCcccc----------cCCceEEecceEEEeccCCCCCeEEEEEEEcCCCCc
Q psy14542 255 KWYKQDSPVE----------ESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQD 300 (371)
Q Consensus 255 ~W~~~~~~~~----------~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~ 300 (371)
.|+++|..+. .++++. ..+.|.|.....+|+|.|+|.|.|..+..
T Consensus 159 ~W~~~g~~~~~~~~~~~~~~~~~~~~-~~s~L~i~~~~~~d~g~ytC~v~~~~~~~ 213 (221)
T 3m8o_H 159 TWSESGQGVTARNFPPSQDASGDLYT-TSSQLTLPATQCLAGKSVTCHVKHYTNPS 213 (221)
T ss_dssp EESCCSTTCEEEECCCEECSSSSCEE-EEEEEEEEGGGSCTTCEEEEEEEETTSCC
T ss_pred EEEECCEECceEEcCceeeCCCCcEE-EEEEEEECHHHcCCCCeEEEEEEECCCCc
Confidence 9999998762 222222 23469999999999999999999987654
No 321
>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...
Probab=99.72 E-value=2.3e-16 Score=126.65 Aligned_cols=161 Identities=15% Similarity=0.222 Sum_probs=104.1
Q ss_pred EEEeccCcEEEEEEecCCC-CCCeeEEEeCC--E---EEe-----------------eC----------CeeEEEEccCC
Q psy14542 21 VVVDVGHRIELHCRVSPKR-LSSAKAWLKDG--L---VLR-----------------RN----------SDEVLVLDRVQ 67 (371)
Q Consensus 21 ~~~~~G~~v~l~C~~~~~~-~~~~~~W~~~~--~---~~~-----------------~~----------~~~~l~i~~~~ 67 (371)
+.+.+|++++|.|.+.... +.+.+.|+|++ . .+. .. ...+|.|.+++
T Consensus 10 ~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~ 89 (222)
T 1q9r_B 10 GLVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQMNTLR 89 (222)
T ss_dssp CEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEECSCC
T ss_pred eeEcCCCEEEEEEEecCccCCCCcEEEEEECCCCCcEEEEEEccCCcccccccCcccCCceEEEEECCCCeEEEEECcCC
Confidence 6899999999999765321 25789999842 1 110 00 24589999999
Q ss_pred cCCCeEEEEEEEcCCC-----CeEEEEEEEEec---ceeeEec-CCceeeecCCcEEEEEEecCC-CCCceEEEeeCCEE
Q psy14542 68 REDAGMYQCHVSADDD-----SAQMSAQVILGG---ELVEIAS-SNQVVVDVGHRIELHCRVSPK-RLSSAKAWLKDGLV 137 (371)
Q Consensus 68 ~~d~G~Y~C~~~~~~~-----~~~~~~~l~v~~---~~~~~~~-~~~~~~~~g~~v~l~C~~~~~-~~~~~v~W~~~~~~ 137 (371)
.+|+|.|.|.+.+..+ .......|.|.. .+|.+.. .+...+.+|+.++|.|.+.+. |.+..+.|++++..
T Consensus 90 ~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~ 169 (222)
T 1q9r_B 90 AEDSATYYCARDHDGYYERFSYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLS 169 (222)
T ss_dssp GGGCEEEEEEECCCSSCCSCCCBCCCEEEEECSSCCBCCEEEEECCCSCCCCSSEEEEEEEEEEEBSSCCEEEEGGGTBC
T ss_pred cccCeEEEEEEeccCCcccceEeCCceEEEeccCCCCCCeEEEccccccccCCCcEEEEEEEccEECCCCEEEEecCCeE
Confidence 9999999999998653 122335666653 2333332 222234689999999999886 65239999999875
Q ss_pred eeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeecccccee
Q psy14542 138 LRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGAS 202 (371)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~ 202 (371)
+.... .... ..++.+.. .+.|.|.++...| |.|+|.+.|. .+..
T Consensus 170 ~~~~~-~~~~---------------~~~~~~~~--~s~L~i~~~~~~d--g~y~C~a~n~-~~~~ 213 (222)
T 1q9r_B 170 SGVHT-FPAV---------------LQSDLYTL--SSSVTVPSSTWPS--ETVTCNVAHP-ASST 213 (222)
T ss_dssp TTEEE-EEEE---------------EETTEEEE--EEEEEEETTTTTT--SCCEEEEEEG-GGTE
T ss_pred cceEe-cccc---------------ccCCcEEE--EEEEEECchhcCC--CeEEEEEEcc-CCCC
Confidence 43210 0000 01222222 2578888777655 9999999998 5543
No 322
>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}
Probab=99.71 E-value=2.4e-16 Score=130.39 Aligned_cols=183 Identities=20% Similarity=0.317 Sum_probs=109.8
Q ss_pred cccceEEEeCCCcEEEeccCcEEEEEEecCCCC----CCeeEEEeCC--E---EEe------------------eCCeeE
Q psy14542 8 KSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRL----SSAKAWLKDG--L---VLR------------------RNSDEV 60 (371)
Q Consensus 8 ~~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~----~~~~~W~~~~--~---~~~------------------~~~~~~ 60 (371)
...+.+...|.. +.+.+|++++|.|.+....+ .+.+.|+|++ . .+. .....+
T Consensus 13 ~~~~~v~~~p~~-~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~ 91 (268)
T 1x9q_A 13 ASDVVMTQTPLS-LPVSLGDQASISCRSSQSLVHSNGNTYLRWYLQKPGQSPKVLIYKVSNRVSGVPDRFSGSGSGTDFT 91 (268)
T ss_dssp -CCCCEEEECSE-ECCCTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEE
T ss_pred cccceEEeeCCe-EEecCCCCEEEEeEecCCcccccCCceEEEEEECCCCCCEEEEEecCCCCCCCcccEEEEcCCCEEE
Confidence 456778887877 88999999999996544332 4789999842 1 111 013468
Q ss_pred EEEccCCcCCCeEEEEEEEcCCCCe-EEEEEEEEecce--------e---------------eEecCCceeeecCCcEEE
Q psy14542 61 LVLDRVQREDAGMYQCHVSADDDSA-QMSAQVILGGEL--------V---------------EIASSNQVVVDVGHRIEL 116 (371)
Q Consensus 61 l~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~v~~~~--------~---------------~~~~~~~~~~~~g~~v~l 116 (371)
|.|.+++.+|+|.|.|.+.+..+.. .....|.|...+ | .+.......+.+|++++|
T Consensus 92 L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~p~~pp~~~~~~~~~~~~~~v~~~~~~~~~v~~G~~v~L 171 (268)
T 1x9q_A 92 LKINRVEAEDLGVYFCSQSTHVPWTFGGGTKLEIKSSADDAKKDAAKKDDAKKDDAKKDGGVKLDETGGGLVQPGGAMKL 171 (268)
T ss_dssp EEESSCCGGGCEEEEEEECSSSSCEECCCEEEC------------------------CGGGCEEEEECCEEECTTCCEEE
T ss_pred EEECCCChhHCEEEEEEEecCCCceEcCCEEEEEccCccCCCccccccccccccccccccceEEECCCceEecCCCcEEE
Confidence 9999999999999999998764422 123445554211 1 122222345589999999
Q ss_pred EEEecCCCC-CceEEEeeCC--EEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEec-----cceEEEEEeecCCccc
Q psy14542 117 HCRVSPKRL-SSAKAWLKDG--LVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLS-----SGELIIHQVDESDRYR 188 (371)
Q Consensus 117 ~C~~~~~~~-~~~v~W~~~~--~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~-----~~~l~i~~~~~~d~~g 188 (371)
.|.+.+.+. .+.+.|++.. ..+. ....+....... ..+......+++.+.. ...|.|.+++.+| +|
T Consensus 172 ~C~~~~~~~~~~~v~W~k~~~~~~~~----~l~~~~~~~~~~-~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D-sG 245 (268)
T 1x9q_A 172 SCVTSGFTFGHYWMNWVRQSPEKGLE----WVAQFRNKPYNY-ETYYSDSVKGRFTISRDDSKSSVYLQMNNLRVED-TG 245 (268)
T ss_dssp EEEEESSCGGGCEEEEEEEETTTEEE----EEEEECCGGGTT-CEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGG-CE
T ss_pred EEEecCccccccEEEEEEeCCCCCcE----EEEEEccccccc-ccccCCccCCeEEEEEeCCCCEEEEEECCCCHHH-CE
Confidence 999987653 3789999842 2111 111111100000 0000000012333321 2579999999999 99
Q ss_pred eeEEEeecc
Q psy14542 189 SYQCRGVNK 197 (371)
Q Consensus 189 ~y~C~~~~~ 197 (371)
.|+|.+.+.
T Consensus 246 ~Y~C~a~~~ 254 (268)
T 1x9q_A 246 IYYCTGASY 254 (268)
T ss_dssp EEEEEEEET
T ss_pred EEEEEEccC
Confidence 999999864
No 323
>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...
Probab=99.71 E-value=2.2e-16 Score=127.32 Aligned_cols=184 Identities=15% Similarity=0.183 Sum_probs=111.5
Q ss_pred ceeeecCCcEEEEEEecCCCC-C--ceEEEeeCC--EEeeeCCeeEEEEccc-----CcCCCeeEEEEEeCCceeEec--
Q psy14542 105 QVVVDVGHRIELHCRVSPKRL-S--SAKAWLKDG--LVLRRNSDEVLVLDRV-----QREDAGMYQCHIEDGKYHMLS-- 172 (371)
Q Consensus 105 ~~~~~~g~~v~l~C~~~~~~~-~--~~v~W~~~~--~~~~~~~~~~~~~~~~-----~~~~~g~y~~~~~~~~~~~~~-- 172 (371)
...+.+|++++|.|.+.+.+. . ..+.|+|.. ..+ ...+..... .....+ ++.+..
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~g~~~----~~l~~~~~~~~~~~~~~~~~---------R~~~~~~~ 75 (228)
T 3bae_H 9 PGLLKPSQTLSLTCSFSGFSIRTSKVGVSWIRQPSGKGL----EWLAHIYWDDDKRYNPSLES---------RLTISKDT 75 (228)
T ss_dssp CSEECTTCCEEEEEEEESSCHHHHCCEEEEEEEETTCCC----EEEEEECTTSCEEECTTTGG---------GEEEEEET
T ss_pred ceeecCCCeEEEEEEEeCcccCCCceeEEEEEECCCCCe----EEEEEEecCCceeeCcccCC---------cEEEEEcC
Confidence 345589999999999987652 2 689999842 211 111111100 001112 333321
Q ss_pred ---cceEEEEEeecCCccceeEEEeeccccc------eeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEE
Q psy14542 173 ---SGELIIHQVDESDRYRSYQCRGVNKLTG------ASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILP 243 (371)
Q Consensus 173 ---~~~l~i~~~~~~d~~g~y~C~~~~~~~~------~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~ 243 (371)
+..|.|.+++.+| +|.|.|.+.+. .+ ..........|.|.... ..+|.+........ +..|+.++|.
T Consensus 76 ~~~~~~L~I~~v~~~D-~G~Y~C~~~~~-~g~~~~~~~~~~~~~~~~L~V~~~~-~~~P~i~~~~~~~~-~~~g~~~~l~ 151 (228)
T 3bae_H 76 SRDMVFMKITSVDTAD-TATYYCARRGF-YGRKYEVNHFDYWGQGTTLTVSSAK-TTAPSVYPLAPVCG-DTTGSSVTLG 151 (228)
T ss_dssp TTTEEEEEECSCCGGG-CEEEEEEEEEE-STTCTTSEEEEEECCCEEEEECSCC-CBCCEEEEECC------CCSEEEEE
T ss_pred CCCeEEEEEcCCCccc-CEEEEEEEecC-CCccccccceeeeCCcEEEEecCCC-CCCCEEEEeccccc-ccCCCCEEEE
Confidence 2589999999999 99999999886 43 11010011266666311 13455544332333 6789999999
Q ss_pred EEeecC-CCC-ceEEEeCCcccccC--C-----ceEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEE
Q psy14542 244 CSAQGN-PLP-TIKWYKQDSPVEES--D-----RIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFI 306 (371)
Q Consensus 244 C~~~~~-p~~-~v~W~~~~~~~~~~--~-----~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l 306 (371)
|.+.+. |.+ .+.|++++..+... . ......+.|.|..+..+| |.|+|.|.|..+.......+
T Consensus 152 C~~~g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~d~-g~YtC~~~n~~~~~~~~~~~ 222 (228)
T 3bae_H 152 CLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-ESITCNVAHPASSTKVDKKI 222 (228)
T ss_dssp EEEEEEBSSCCEEEEGGGTCCTTEEEEEEEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEEEEEC
T ss_pred EEEccEeCCCEEEEEeeCCcccCceEcCceeCCCcEEEEEEEEEEhhhcCC-CcEEEEEEECCCCCCEEEEc
Confidence 999885 777 99999988754211 0 011123468898888866 99999999999876554433
No 324
>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}
Probab=99.71 E-value=1.3e-16 Score=132.09 Aligned_cols=180 Identities=16% Similarity=0.223 Sum_probs=108.4
Q ss_pred eeeecCCcEEEEEEecCCCCCceEEEeeC--CEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEec----cceEEEE
Q psy14542 106 VVVDVGHRIELHCRVSPKRLSSAKAWLKD--GLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLS----SGELIIH 179 (371)
Q Consensus 106 ~~~~~g~~v~l~C~~~~~~~~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~----~~~l~i~ 179 (371)
..+.+|++++|.|.+.. +. ..+.|+|. +.... ......+......+.+ .++++.+.. +..|.|.
T Consensus 36 v~v~~G~~v~L~C~~~~-~~-~~v~W~r~~~~~~~~----~~~~~~~~~~~~~~~~----~~~R~~~~~~~~~~~sL~I~ 105 (268)
T 3pl6_D 36 KVTEKGKYVELRCDPIS-GH-TALYWYRQSLGQGPE----FLIYFQGTGAADDSGL----PNDRFFAVRPEGSVSTLKIQ 105 (268)
T ss_dssp EEEETTCCEEEEEBCBT-TC-CEEEEEEECTTSCCE----EEEEEETTEEEECTTC----CSTTEEEECTTSSSEEEEEC
T ss_pred EEecCCCCEEEEEEeCC-CC-ceEEEEEECCCCCcE----EEEEECCCCccccCCC----ccCcEEEEecCCCEEEEEEC
Confidence 34589999999999873 44 79999983 21111 0111100000000000 013444332 4679999
Q ss_pred EeecCCccceeEEEeeccc-cceeeeeeccceeeeecch-hccccceeee-eeeeeeeecCCeEEEEEEeecCCC-C-ce
Q psy14542 180 QVDESDRYRSYQCRGVNKL-TGASLLSVNRGRLSLTENK-RLLSAAKMFE-KHRILNVKKDESVILPCSAQGNPL-P-TI 254 (371)
Q Consensus 180 ~~~~~d~~g~y~C~~~~~~-~~~~~~~~~~~~l~v~~~~-~~~~p~~~~~-~~~~~~~~~g~~~~l~C~~~~~p~-~-~v 254 (371)
+++.+| +|.|.|.+.+.. ........ .+.|.... ...+|.+... +.... +..|+.++|.|.+.+.++ + .+
T Consensus 106 ~v~~~D-~G~Y~C~~~~~~~~~~~~~~~---~l~V~~~~~~~~~P~v~~~~~~~~~-~~~g~~v~L~C~~~g~~p~~~~v 180 (268)
T 3pl6_D 106 RTERGD-SAVYLCATSALGDTQYFGPGT---RLTVLEDLKNVFPPEVAVFEPSEAE-ISHTQKATLVCLATGFYPDHVEL 180 (268)
T ss_dssp SCCGGG-CEEEEEEEESSSSSCEECCCE---EEEEESCGGGCBCCEEEEECCCHHH-HHHHSEEEEEEEEEEEBSSCEEE
T ss_pred CCCccc-CEEEEEEEecCCCceeeCCcE---EEEEecCcccccCCceEEeCCCccc-ccCCCceEEEEEECcccCCCeEE
Confidence 999999 999999998731 22222222 55565311 1124544432 22222 566999999999998555 4 89
Q ss_pred EEEeCCcccccCCce---------------EEecceEEEeccCCCC-CeEEEEEEEcCCCCc
Q psy14542 255 KWYKQDSPVEESDRI---------------QRIGSSLSISHVEESD-SGVWNCVANNSEGQD 300 (371)
Q Consensus 255 ~W~~~~~~~~~~~~~---------------~~~~~~l~i~~~~~~d-~G~Y~C~a~n~~g~~ 300 (371)
.|+++|..+....+. ....+.|.|.....+| +|.|+|.|.|.....
T Consensus 181 ~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~~g~YtC~v~~~~l~~ 242 (268)
T 3pl6_D 181 SWWVNGKEVHSGVCTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLSE 242 (268)
T ss_dssp EEEESSSEECTTEEECSSCEESSTTCTTCCEEEEEEEEEEHHHHSCTTCEEEEEEEECCBCT
T ss_pred EEEECCEECCCCeEeccccccccccCCCCcEEEEEEEEEcHHHhccCCCEEEEEEEcCCCCC
Confidence 999999877543211 1122457888887777 999999999986654
No 325
>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...
Probab=99.71 E-value=3.4e-17 Score=129.92 Aligned_cols=168 Identities=14% Similarity=0.227 Sum_probs=100.5
Q ss_pred ecCCcEEEEEEecCCCC---CceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCC
Q psy14542 109 DVGHRIELHCRVSPKRL---SSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESD 185 (371)
Q Consensus 109 ~~g~~v~l~C~~~~~~~---~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d 185 (371)
.+|++++|.|.+.+.++ ...+.|+|++..+...... .......| .+.+. ..|.|......|
T Consensus 16 ~~G~~v~L~C~~~g~~p~~~~~~v~W~k~~~~~~~~~~~-----~~~~~~~g---------~~~~~--~~l~i~~~d~~d 79 (207)
T 1l6x_A 16 MISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTK-----PREEQYNS---------TYRVV--SVLTVLHQDWLN 79 (207)
T ss_dssp CTTSCCEEEEEEEEECSSSCCCEEEEEETTEEECCCEEC-----CCEECTTS---------CEEEE--EEEECCHHHHHT
T ss_pred ecCCceEEEEEEecccCCCCCeEEEEEECCccccCcccC-----CceeccCC---------cEEEE--EEEEEEHHHccC
Confidence 68999999999987652 3699999999876533110 00001112 22111 234455555667
Q ss_pred ccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecC-CC-CceEEEeCCccc
Q psy14542 186 RYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGN-PL-PTIKWYKQDSPV 263 (371)
Q Consensus 186 ~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-~~v~W~~~~~~~ 263 (371)
.|.|+|.+.+. .+...... .+.+. .....+|.+........ ...|+.+.|.|.+.|. |+ +.+.|+++|..+
T Consensus 80 -~g~Y~C~a~n~-~~~~~~~~---~v~~~-~~~~~~P~v~~~~~~~~-~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~ 152 (207)
T 1l6x_A 80 -GKEYKCKVSNK-ALPAPIEK---TISKA-KGQPREPQVYTLPPSRD-ELTKNQVSLTCLVKGFYPSDIAVEWESNGQPE 152 (207)
T ss_dssp -TCCEEEEEECT-TSSSCEEE---EECCC-CSCCBCCEEEEECCCGG-GGGSSEEEEEEEEEEEBSSCCEEEEEETTEEE
T ss_pred -CceEEEEEEcC-cCCcceEE---EeccC-CCCCcCCEEEEECCChH-HhcCCcEEEEEEEeCeECCCeEEEEEECCeec
Confidence 89999999987 44321121 22110 00114566554433322 2346679999999984 54 489999999876
Q ss_pred ccCCc--eE-Eecc------eEEEeccCCCCCeEEEEEEEcCCCC
Q psy14542 264 EESDR--IQ-RIGS------SLSISHVEESDSGVWNCVANNSEGQ 299 (371)
Q Consensus 264 ~~~~~--~~-~~~~------~l~i~~~~~~d~G~Y~C~a~n~~g~ 299 (371)
..... .. ..++ .|.|.....+|.|.|+|.|.|....
T Consensus 153 ~~~~~~~~~~~~~gt~~~~s~l~i~~~~~~~~g~YtC~a~n~~l~ 197 (207)
T 1l6x_A 153 NNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALH 197 (207)
T ss_dssp CCEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTSG
T ss_pred cCccccCceECCCCCEEEEEEEEECHHHcCCCCEEEEEEEcCCcC
Confidence 53211 11 1222 3555555567899999999998654
No 326
>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4
Probab=99.71 E-value=5.6e-17 Score=133.96 Aligned_cols=203 Identities=11% Similarity=0.070 Sum_probs=99.8
Q ss_pred eeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCC
Q psy14542 106 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESD 185 (371)
Q Consensus 106 ~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d 185 (371)
..+.+|+++.|.|.+....+ ..+.|.-.-...... +.| . ....+.+.+++.
T Consensus 9 ~~V~~G~sv~l~Cs~~c~~p-~~~~~~t~l~~~~~~-------------~~g---------~----~~~~~~l~~v~~-- 59 (291)
T 1mq8_A 9 VILPRGGSVLVTCSTSCDQP-KLLGIETPLPKKELL-------------LPG---------N----NRKVYELSNVQE-- 59 (291)
T ss_dssp EEECTTCEEEEEEEECCSSC-SEEEEECSSCCCCCC-------------CSC---------S----SEEEEEEESCCS--
T ss_pred cEEcCCCeEEEEEeCCCCCC-ccceEEecCCCcccc-------------cCC---------C----ceEEEEEEeccc--
Confidence 34589999999999975433 458885311000000 000 0 002467777763
Q ss_pred ccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecC-CCC--ceEEEeCCcc
Q psy14542 186 RYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGN-PLP--TIKWYKQDSP 262 (371)
Q Consensus 186 ~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~--~v~W~~~~~~ 262 (371)
.|.|.|.+... .......+ .+.|...+ ..+.+... ... +.+|+.++|+|.+.+. |.. +|+|++++..
T Consensus 60 -~~~y~C~~~~~-~~~~~~~v---~l~V~~~P--~~v~I~~~--~~~-~~~G~~~~LtC~v~g~~P~~~l~itW~kg~~~ 129 (291)
T 1mq8_A 60 -DSQPMCYSNCP-DGQSTAKT---FLTVYWTP--ERVELAPL--PSW-QPVGKNLTLRCQVEGGAPRANLTVVLLRGEKE 129 (291)
T ss_dssp -CCCCEEEEECS-SCEEEEEC---EEEECBCC--SCCCBCCC--CSB-CCSSCCCEEEEEECCCBSTTTEEEEEESSSSE
T ss_pred -CCeEEEEEEcC-CccEEEEE---EEEEecCC--CCCEEecC--Ccc-ccCCCCEEEEEEecCccCCCCcEEEEEECCEE
Confidence 34699999755 33444444 66666321 22223222 223 8899999999999874 444 4899999987
Q ss_pred cccCCceE-EecceEEEeccCCCCCeEEEEEEEcCCCC--------ceeEEEEEEecCcccccccceEEEEeeeeccccc
Q psy14542 263 VEESDRIQ-RIGSSLSISHVEESDSGVWNCVANNSEGQ--------DKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRL 333 (371)
Q Consensus 263 ~~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~--------~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~~~ 333 (371)
+....... ....+|.+...+.+|.+.|+|+|.|..+. .+....|.|.++|... ..+..|.
T Consensus 130 l~~~~~~~~~~~~~l~~~~~~~D~g~~~~C~A~~~l~~~g~~l~~~~s~~~~L~V~~~P~~~--------~~~~~p~--- 198 (291)
T 1mq8_A 130 LKREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATP--------PQLVSPR--- 198 (291)
T ss_dssp EEEEECCBTTEEEEEECCCSSSCSSCEEEEEEEEECGGGTSCEEEECCCCEECBC-------------------------
T ss_pred eecccCCCCCceEEEEeeeeeccCCceEEEEEEecCCccCCccccccccceEEEEEecCCCC--------ceecCCc---
Confidence 75432110 11245777777777888999999997653 2455677787776510 0011110
Q ss_pred cccccccccceeeeeecCCeEEEeeeeecCCCC---ccccC
Q psy14542 334 LSAAKMFEKHRILNVKKDESVILPCSAQGNPLP---TIKYR 371 (371)
Q Consensus 334 ~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p---~i~W~ 371 (371)
.+.+|+.++|.|.++|+||+ .|.|+
T Consensus 199 -------------~l~eG~~v~l~C~~~g~~P~~~~~v~w~ 226 (291)
T 1mq8_A 199 -------------VLEVDTQGTVVCSLDGLFPVSEAQVHLA 226 (291)
T ss_dssp -----------------------------------------
T ss_pred -------------CccCCCeEEEEEEcCCCCCCcccEEEEE
Confidence 46699999999999998665 58885
No 327
>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus}
Probab=99.71 E-value=2.2e-16 Score=129.70 Aligned_cols=189 Identities=15% Similarity=0.190 Sum_probs=111.5
Q ss_pred CceeeecCCcEEEEEEecCCCC-CceEEEeeCC--EEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEec-----cce
Q psy14542 104 NQVVVDVGHRIELHCRVSPKRL-SSAKAWLKDG--LVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLS-----SGE 175 (371)
Q Consensus 104 ~~~~~~~g~~v~l~C~~~~~~~-~~~v~W~~~~--~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~-----~~~ 175 (371)
....+.+|++++|.|.+.+.+. ...+.|+|.. ..+. ..+.+.... ....| .....+++.+.. +..
T Consensus 14 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~----~l~~~~~~~--~~~~~-~~~~~~R~~~~~~~~~~~~s 86 (261)
T 2xqy_G 14 GAELVKPGASVKMSCKASGYSFTSYWMNWVKQRPGRGLE----WIGRIDPSD--NETHY-NQDFKDKVTLTVDKSSSTVY 86 (261)
T ss_dssp SEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEE----EEEEECTTT--CCEEE-CGGGTTTEEEEEEGGGTEEE
T ss_pred CCEEEcCCCCEEEEEEeCCcccCCceEEEEEeCCCCCcE----EEEEEecCC--Cceee-CCccCCcEEEEecCCCCEEE
Confidence 3444589999999999987651 3789999863 2111 111111000 00000 000022343332 357
Q ss_pred EEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecC-CCC-c
Q psy14542 176 LIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGN-PLP-T 253 (371)
Q Consensus 176 l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~ 253 (371)
|.|.+++.+| +|.|.|.+.+. .+..........|.|..... .+|.+........ +..|+.++|.|.+.+. |.+ .
T Consensus 87 L~I~~v~~~D-sG~Y~C~~~~~-~~~~~~~~~~~~L~V~~~~~-~~P~v~~~~p~~~-v~~g~~v~L~C~~~g~~P~~i~ 162 (261)
T 2xqy_G 87 IQLSSLTSED-SAVYYCGRLGY-VYGFDYWGQGTTLTVSSAKT-TAPSVYPLAPVCG-DTTGSSVTLGCLVKGYFPEPVT 162 (261)
T ss_dssp EEECSCCGGG-CEEEEEEEECT-TSSEEEECCCEEEEECSSCC-BCCEEEEECCCCC---CCSEEEEEEEEEEEBSSCCE
T ss_pred EEEcCCCccc-CeEEEEEEecC-CCcceEECCCEEEEEccCCC-CCCeEEEeCCCcc-ccCCCcEEEEEEEEeEeCCCCE
Confidence 9999999999 99999999985 32111100112666663211 3444443332223 6789999999999874 766 8
Q ss_pred eEEEeCCcccccC--Cc-----eEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEE
Q psy14542 254 IKWYKQDSPVEES--DR-----IQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQL 304 (371)
Q Consensus 254 v~W~~~~~~~~~~--~~-----~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~ 304 (371)
+.|++++..+... .. .....+.|.|..+..+| |.|+|.|.|.........
T Consensus 163 v~W~k~g~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~YtC~v~n~~~~~~~~~ 219 (261)
T 2xqy_G 163 LTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVDK 219 (261)
T ss_dssp EEEGGGTCCTTEEECCCEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEEEE
T ss_pred EEEecCCCcCceEecCceecCCcEEEEEEEEEeccccCC-CEEEEEEEECCCCccEEE
Confidence 9999998765311 11 11223578999888888 999999999776644333
No 328
>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*
Probab=99.71 E-value=6.7e-16 Score=120.46 Aligned_cols=153 Identities=14% Similarity=0.154 Sum_probs=106.6
Q ss_pred eeecCCcEEEEEEecCCCCCc--eEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecC
Q psy14542 107 VVDVGHRIELHCRVSPKRLSS--AKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDES 184 (371)
Q Consensus 107 ~~~~g~~v~l~C~~~~~~~~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~ 184 (371)
.+..|++++|.|.+ +.+. + .|.|++.+..+ . + .........|.|.+++.+
T Consensus 18 ~v~~G~sv~L~C~a-~~p~-P~~~i~W~~~~~~l--~-~-----------------------~~~~~~~~~L~I~~v~~~ 69 (210)
T 1gsm_A 18 AVALGASRQLTCRL-ACAD-RGASVQWRGLDTSL--G-A-----------------------VQSDTGRSVLTVRNASLS 69 (210)
T ss_dssp EEETTCCEEEEEEE-CCSS-TTCEEEEESSTTTT--C-C-----------------------EEEESSEEEEEECSCCGG
T ss_pred EEeCCCCEEEEEEC-CCCC-CCcceEEeeccccc--C-c-----------------------EEecCCccEEEECccCcc
Confidence 55899999999999 7766 5 99999854322 0 0 000111257999999999
Q ss_pred CccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecC-CC----CceEEEeC
Q psy14542 185 DRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGN-PL----PTIKWYKQ 259 (371)
Q Consensus 185 d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~----~~v~W~~~ 259 (371)
| .|.|.|.+.+. .+...... .|.|. .+|........ . +..|+.+ |.|.+.+. |. +++.|+++
T Consensus 70 d-~G~Y~C~a~n~-~~~~~~~~---~ltV~-----~~P~~~~i~~~-~-~~~g~~~-l~C~a~g~~P~~~~~lti~Wlk~ 136 (210)
T 1gsm_A 70 A-AGTRVCVGSCG-GRTFQHTV---QLLVY-----AFPNQLTVSPA-A-LVPGDPE-VACTAHKVTPVDPNALSFSLLVG 136 (210)
T ss_dssp G-CEEEEEEEEET-TEEEEEEE---EEEEE-----BCCSEEEEESS-S-BCTTCCE-EEEEEEEEBCCCTTTEEEEEEET
T ss_pred c-CceEEEEEEeC-CCceEEEE---EEEEE-----ecCCCcEEccc-e-EEeCCce-EEEEeCCCCCCCCCCcEEEEEEC
Confidence 9 99999999998 66666666 88888 56654432222 3 6778888 99999874 64 47999999
Q ss_pred CcccccCCc----eE--------------EecceEEEeccCCCCCeEEEEEEEcCCCCc
Q psy14542 260 DSPVEESDR----IQ--------------RIGSSLSISHVEESDSGVWNCVANNSEGQD 300 (371)
Q Consensus 260 ~~~~~~~~~----~~--------------~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~ 300 (371)
+..+..... .. .-.++|.+.....+|.++|+|+|.+..-..
T Consensus 137 ~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~vts~~~~~~~~~D~~~~~tC~a~~~L~~~ 195 (210)
T 1gsm_A 137 GQELEGAQALGPEVQEEEEEPQGDEDVLFRVTERWRLPPLGTPVPPALYCQATMRLPGL 195 (210)
T ss_dssp TEECTTCEECCCEEEECTTCCSSCCCCCEEEEEEEECCCCCSSCCSEEEEEEEEEETTE
T ss_pred CEEcccccccccceecccccccCCcceEEEEEEEEeecCCcccCCceEEEEEEeeCCCC
Confidence 998854321 10 011234444677777899999999876443
No 329
>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A
Probab=99.71 E-value=7.3e-16 Score=125.89 Aligned_cols=171 Identities=18% Similarity=0.257 Sum_probs=106.1
Q ss_pred eeeecCCcEEEEEEecCCCC----CceEEEeeCC--EEeeeCCeeEEEEcc--cCcCCCeeEEEEEeCCceeEe---ccc
Q psy14542 106 VVVDVGHRIELHCRVSPKRL----SSAKAWLKDG--LVLRRNSDEVLVLDR--VQREDAGMYQCHIEDGKYHML---SSG 174 (371)
Q Consensus 106 ~~~~~g~~v~l~C~~~~~~~----~~~v~W~~~~--~~~~~~~~~~~~~~~--~~~~~~g~y~~~~~~~~~~~~---~~~ 174 (371)
..+.+|++++|.|.+.+.+. .+.+.|++.. ..+. .+.... ......+ ++.+. ...
T Consensus 11 ~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~~~-----~~~~~~~~~~~~~~~---------r~~~~~~~~~~ 76 (247)
T 1svz_A 11 LPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQ-----LLIYKVSNRFSGVPD---------RFSGSGSGTDF 76 (247)
T ss_dssp EEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEE-----EEEETTTEECTTCCT---------TEEEEEETTEE
T ss_pred EEecCCCCEEEEEeCCCcccccCCCceEEEEEECCCCCce-----EEEEEecccCCCCCC---------cEEeccCCCEE
Confidence 34589999999999988762 3799999843 1111 000000 0000112 22222 124
Q ss_pred eEEEEEeecCCccceeEEEeeccccce-eeeeeccceeeeecchhc--------cccceeeeeeeeeeeecCCeEEEEEE
Q psy14542 175 ELIIHQVDESDRYRSYQCRGVNKLTGA-SLLSVNRGRLSLTENKRL--------LSAAKMFEKHRILNVKKDESVILPCS 245 (371)
Q Consensus 175 ~l~i~~~~~~d~~g~y~C~~~~~~~~~-~~~~~~~~~l~v~~~~~~--------~~p~~~~~~~~~~~~~~g~~~~l~C~ 245 (371)
.|.|.+++.+| +|.|.|.+.+. .+. ..... .|.|...... .++.....+.... +..|++++|.|.
T Consensus 77 ~L~I~~v~~~D-~G~Y~C~~~n~-~~~~~~~~~---~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~G~~v~L~C~ 150 (247)
T 1svz_A 77 TLKISRVEAED-LGIYYCFQGSH-FPPTFGGGT---KLEIKGGGGSGGGGSGGGGSEVQLQQSGPEL-KKPGETVKISCK 150 (247)
T ss_dssp EEEESSCCGGG-CEEEEEEECSS-SSCEECCCE---EEEEC---------------CCEEEECCCEE-ECTTCCEEEEEE
T ss_pred EEEECCCCHHH-CEEEEEEEccC-CccEECCCE---EEEEECCccccccccccccCceEEeCCCcee-ecCCCcEEEEEE
Confidence 79999999999 99999999887 332 22223 5666632110 0122222333344 899999999999
Q ss_pred eecCC--CCceEEEeCC--cccc-----------------cCCceEEe------cceEEEeccCCCCCeEEEEEEEcC
Q psy14542 246 AQGNP--LPTIKWYKQD--SPVE-----------------ESDRIQRI------GSSLSISHVEESDSGVWNCVANNS 296 (371)
Q Consensus 246 ~~~~p--~~~v~W~~~~--~~~~-----------------~~~~~~~~------~~~l~i~~~~~~d~G~Y~C~a~n~ 296 (371)
+.+.+ .+.+.|++++ ..+. ...++... ..+|.|.++..+|+|.|.|.|.|.
T Consensus 151 ~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~ 228 (247)
T 1svz_A 151 ATNYAFTDYSMHWVKQAPGGDLKYVGWINTETDEPTFADDFKGRFAFSLDTSTSTAFLQINNLKNEDTATYFCVRDRH 228 (247)
T ss_dssp EESSCGGGSCEEEEEECTTCCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEEG
T ss_pred EcCcccCCcEEEEEEeCCCCCcEEEEEEEcCCCccccCccccCcEEEEEecCCCEEEEEECCCChhHCEEEEEEEecc
Confidence 99875 4689999964 2110 12344422 147999999999999999999985
No 330
>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}
Probab=99.71 E-value=1.9e-16 Score=131.74 Aligned_cols=173 Identities=14% Similarity=0.202 Sum_probs=108.1
Q ss_pred eEEEeCCCcEEEeccCcEEEEEEecCC-CCCCeeEEEeCC--EE-------------------------Ee---eCCeeE
Q psy14542 12 SIEMSPSGQVVVDVGHRIELHCRVSPK-RLSSAKAWLKDG--LV-------------------------LR---RNSDEV 60 (371)
Q Consensus 12 ~~~~~p~~~~~~~~G~~v~l~C~~~~~-~~~~~~~W~~~~--~~-------------------------~~---~~~~~~ 60 (371)
.+.. |.. +.+.+|++++|.|.+... .+...+.|+|.. .. +. .....+
T Consensus 3 ~v~q-p~~-~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~s 80 (280)
T 3fku_X 3 QLVQ-SGA-EVKKPGSSVKVSCTSSEVTFSSFAISWVRQAPGQGLEWLGGISPMFGTPNYAQKFQGRVTITADQSTRTAY 80 (280)
T ss_dssp CEEC-CCC-CEECTTCCEEEEEEECCSCCTTSCEEECCBCSSSCCCCCEEECTTTCCEEECGGGTTTCEEEEETTTTEEE
T ss_pred eEEc-CCC-EEECCCCcEEEEEEeeccCCCCeEEEEEEeCCCCCCEEEEEEeccCCccccCcccCCcEEEEEeCCCCEEE
Confidence 4444 555 889999999999976542 255789999731 00 00 003358
Q ss_pred EEEccCCcCCCeEEEEEEEcCC--------CC-eEEEEEEEEec--------------ceeeEecCCceeeecCCcEEEE
Q psy14542 61 LVLDRVQREDAGMYQCHVSADD--------DS-AQMSAQVILGG--------------ELVEIASSNQVVVDVGHRIELH 117 (371)
Q Consensus 61 l~i~~~~~~d~G~Y~C~~~~~~--------~~-~~~~~~l~v~~--------------~~~~~~~~~~~~~~~g~~v~l~ 117 (371)
|.|.+++.+|+|.|.|.+.+.. .. ......|.|.. .++.+...+...+.+|++++|.
T Consensus 81 L~I~~v~~~DsG~Y~C~~~~~~~~~g~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~v~~~p~~~v~~G~~v~L~ 160 (280)
T 3fku_X 81 MDLRSLRSEDTAVYYCARSPSYICSGGTCVFDHWGQGTLVTVSSGGGGSGGGGSGGGGIQPGLTQPPSVSKGLRQTATLT 160 (280)
T ss_dssp EEECSCCSTTCEECCEEECSSSSSSSTTCCCCEECCCCEEEECC--------------CCCSBBCCSEEEECTTCCEEEE
T ss_pred EEECCCChhhCEEEEEEEecCCccccccccccEECCCEEEEEcCCCCccCCCCCCceEeeeEEEeCCcEEEecCCCEEEE
Confidence 9999999999999999998761 11 12345666663 1444555555555899999999
Q ss_pred EEecC-CCCCceEEEeeCC--EEeeeCCeeEEEEcc-cCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEE
Q psy14542 118 CRVSP-KRLSSAKAWLKDG--LVLRRNSDEVLVLDR-VQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCR 193 (371)
Q Consensus 118 C~~~~-~~~~~~v~W~~~~--~~~~~~~~~~~~~~~-~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~ 193 (371)
|.+.+ .+....+.|++.. ..+..- +.... ......+.|...... ....|.|.+++.+| +|.|.|.
T Consensus 161 C~~~~~~~~~~~v~W~r~~~~~~~~~l----~~~~~~~~~~~~~r~~~~~~~------~~~~L~I~~v~~~D-sG~Y~C~ 229 (280)
T 3fku_X 161 CTGNSNNVGNQGAAWLQQHQGHPPKLL----SYRNNDRPSGISERFSASRSG------NTASLTITGLQPED-EADYYCS 229 (280)
T ss_dssp EECCCCCCCTTCCEEEEECSSSCCEES----CCTTCCCCSSSCTTEEEEEET------TEEEEEECSCCGGG-CSEEEEE
T ss_pred EEecCCCCCCceEEEEEECCCCCCEEE----EEeccccCCCCCCCEEEEccC------CEEEEEECCCCHHH-CEEEEEE
Confidence 99987 3323789999832 211100 00000 000011212111111 12469999999999 9999999
Q ss_pred eecc
Q psy14542 194 GVNK 197 (371)
Q Consensus 194 ~~~~ 197 (371)
+.+.
T Consensus 230 ~~~~ 233 (280)
T 3fku_X 230 TWDS 233 (280)
T ss_dssp EEET
T ss_pred EecC
Confidence 9886
No 331
>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...
Probab=99.71 E-value=1.5e-16 Score=126.52 Aligned_cols=163 Identities=15% Similarity=0.251 Sum_probs=104.1
Q ss_pred CCCcEEEeccCcEEEEEEecCCC-CCCeeEEEeC--CEEEe-----------------eC----------CeeEEEEccC
Q psy14542 17 PSGQVVVDVGHRIELHCRVSPKR-LSSAKAWLKD--GLVLR-----------------RN----------SDEVLVLDRV 66 (371)
Q Consensus 17 p~~~~~~~~G~~v~l~C~~~~~~-~~~~~~W~~~--~~~~~-----------------~~----------~~~~l~i~~~ 66 (371)
|.. +.+.+|++++|.|.+.... +.+.+.|+|+ +.... .. ...+|.|.++
T Consensus 7 p~~-~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v 85 (210)
T 3d9a_H 7 SGP-SLVKPSQTLSLTCSVTGDSITSDYWSWIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSV 85 (210)
T ss_dssp ESC-SEECTTSCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCEEECGGGTTTEEEEEEGGGTEEEEEECSC
T ss_pred CCC-EEecCCCcEEEEEEEecccCCCCcEEEEEeCCCCCcEEEEEEcCCCCeEECcccCceEEEEecCCCCEEEEEECCC
Confidence 444 6899999999999765432 2478999984 21110 00 2358999999
Q ss_pred CcCCCeEEEEEEEcCCCCeEEEEEEEEec---ceeeEec-CCceeeecCCcEEEEEEecCC-CCCceEEEeeCCEEeeeC
Q psy14542 67 QREDAGMYQCHVSADDDSAQMSAQVILGG---ELVEIAS-SNQVVVDVGHRIELHCRVSPK-RLSSAKAWLKDGLVLRRN 141 (371)
Q Consensus 67 ~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~---~~~~~~~-~~~~~~~~g~~v~l~C~~~~~-~~~~~v~W~~~~~~~~~~ 141 (371)
+.+|+|.|.|.+.+.. .......|.|.. .+|.+.. .+...+..|+.++|.|.+.+. |.+..+.|++++..+...
T Consensus 86 ~~~D~G~Y~C~~~~~~-~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~ 164 (210)
T 3d9a_H 86 TTEDTATYYCANWDGD-YWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVH 164 (210)
T ss_dssp CGGGCEEEEEEETTSS-CBCCCEEEEECCCCCBCCEEEEECCTTSCCCSSEEEEEEEEEEEBSSCCEEEEGGGTBCTTEE
T ss_pred CcccCEEEEEEEecCc-ccccceEEEeccCCCCCCEEEEecCCcccccCCcEEEEEEEeeEecCCcEEEEeeCCcccceE
Confidence 9999999999998753 222234566652 2333332 222334689999999999887 552399999988753211
Q ss_pred CeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeecccccee
Q psy14542 142 SDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGAS 202 (371)
Q Consensus 142 ~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~ 202 (371)
..... . .+ |.| .. .+.|.|.++.. | .|.|+|.+.|. .+..
T Consensus 165 ~~~~~-----~-~~-~~~---------~~--~s~L~i~~~~~-~-~g~Y~C~a~n~-~~~~ 204 (210)
T 3d9a_H 165 TFPAV-----L-QS-DLY---------TL--SSSVTVPSSTW-P-SETVTCNVAHP-ASST 204 (210)
T ss_dssp ECCCE-----E-ET-TEE---------EE--EEEEEEEGGGT-T-TSCCEEEEEEG-GGTE
T ss_pred EcCCc-----c-CC-CcE---------EE--EEEEEEcHHHc-C-CCcEEEEEEeC-CCCc
Confidence 00000 0 01 222 11 25788888776 5 49999999998 5543
No 332
>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}
Probab=99.71 E-value=1.7e-16 Score=131.42 Aligned_cols=174 Identities=14% Similarity=0.193 Sum_probs=110.3
Q ss_pred cceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeC--C------------EEE------------e--eCCeeEE
Q psy14542 10 SLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKD--G------------LVL------------R--RNSDEVL 61 (371)
Q Consensus 10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~--~------------~~~------------~--~~~~~~l 61 (371)
.+.+...|.. +.+.+|++++|.|.+. . +...+.|+|. + ... . .....+|
T Consensus 27 ~~~v~~~p~~-v~v~~G~~v~L~C~~~-~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL 103 (270)
T 3qib_D 27 GMKVIQTPRY-LVKGQGQKAKMRCIPE-K-GHPVVFWYQQNKNNEFKFLINFQNQEVLQQIDMTEKRFSAECPSNSPCSL 103 (270)
T ss_dssp -CCCEEECSE-EEEETTSCEEEEEECC-T-TCCEEEEEEECTTCCEEEEEEEETTEEEEECHHHHHHEEEECCTTSCEEE
T ss_pred ceeEEeCCCe-EEEcCCCCEEEEEEec-C-CCceEEEEEECCCCCcEEEEEECCCCceecCCccCCcEEEEeCCCcEEEE
Confidence 4667777776 8999999999999653 3 5678999981 1 110 0 0136789
Q ss_pred EEccCCcCCCeEEEEEEEcCCCC----eEEEEEEEEec-----ceeeEecC-Cc-eeeecCCcEEEEEEecC-CCCCceE
Q psy14542 62 VLDRVQREDAGMYQCHVSADDDS----AQMSAQVILGG-----ELVEIASS-NQ-VVVDVGHRIELHCRVSP-KRLSSAK 129 (371)
Q Consensus 62 ~i~~~~~~d~G~Y~C~~~~~~~~----~~~~~~l~v~~-----~~~~~~~~-~~-~~~~~g~~v~l~C~~~~-~~~~~~v 129 (371)
.|.+++.+|+|.|.|.+.+.... ......|.|.. .+|.+... +. ..+..|+.++|.|.+.+ .|.+..+
T Consensus 104 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v 183 (270)
T 3qib_D 104 EIQSSEAGDSALYLCASSLNWSQDTQYFGPGTRLLVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVEL 183 (270)
T ss_dssp EESSCCGGGCEEEEEEEESCTTCCCCEECCCEEEEEESCSTTCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEE
T ss_pred EECCCCHhHCeEEEEEEecCCCccceEECCcEEEEEccccccccCCceEEECCCccccccCCceEEEEEecceeCCCeEE
Confidence 99999999999999999864321 12334566652 13333221 11 12245999999999988 4443489
Q ss_pred EEeeCCEEeeeCCeeE-EEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeecc
Q psy14542 130 AWLKDGLVLRRNSDEV-LVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNK 197 (371)
Q Consensus 130 ~W~~~~~~~~~~~~~~-~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~ 197 (371)
.|+++|..+....... ...........|.|. +. +.|.|.....+|+.|.|+|.+.+.
T Consensus 184 ~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~---------~~--s~L~i~~~~~~d~~g~YtC~v~~~ 241 (270)
T 3qib_D 184 SWWVNGKEVHSGVCTDPQPLKEQPALNDSRYA---------LS--SRLRVSATFWQNPRNHFRCQVQFY 241 (270)
T ss_dssp EEEETTEEECTTEEECSSCEESCTTSSSCCEE---------EE--EEEEEEHHHHHSTTCEEEEEEEEC
T ss_pred EEEECCEECCCCcccccccccccccCCCCCEE---------EE--EEEEEcHHHhccCCCeEEEEEEec
Confidence 9999999886532110 000111222334332 21 467777776554489999999987
No 333
>3nl4_H Antigen binding fragment,immunoglobulin IGG - HEA; FAB, rabbit, conformation-specific, amyloid, immune system; 1.54A {Oryctolagus cuniculus} PDB: 4hbc_H
Probab=99.71 E-value=1.2e-16 Score=127.68 Aligned_cols=191 Identities=13% Similarity=0.162 Sum_probs=106.8
Q ss_pred CceeeecCCcEEEEEEecCCC-CCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEec---cceEEEE
Q psy14542 104 NQVVVDVGHRIELHCRVSPKR-LSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLS---SGELIIH 179 (371)
Q Consensus 104 ~~~~~~~g~~v~l~C~~~~~~-~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~---~~~l~i~ 179 (371)
....+.+|++++|.|.+.+.+ ....+.|++.... ......+.+.... ..+......+++.+.. +..|.|.
T Consensus 7 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~--~~~~~~~~~~~~~----~~~~~~~~~~r~~~~~~~~~~~L~I~ 80 (215)
T 3nl4_H 7 GGRLVTPGTPLTLACTVSGFSLNTYSMFWVRQAPG--KGLQWIGIISNFG----VIYYATWAKGRFTISKTSTTVDLKIT 80 (215)
T ss_dssp CCCEECTTCCEEEEEEEESSCTTTCCEEEEEECTT--SCEEEEEEECTTC----CEEECGGGTTTEEEEECSSEEEEEES
T ss_pred CCEEEcCCCcEEEEEEecCcccCCCeEEEEEECCC--CCeEEEEEEecCC----ccccCCcccCCEEEEeeCCEEEEEEC
Confidence 344558999999999997632 2378999984310 0001111111100 0000000012333322 2469999
Q ss_pred EeecCCccceeEEEeeccccce----eeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecCCC--Cc
Q psy14542 180 QVDESDRYRSYQCRGVNKLTGA----SLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPL--PT 253 (371)
Q Consensus 180 ~~~~~d~~g~y~C~~~~~~~~~----~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~--~~ 253 (371)
+++.+| +|.|.|.+.+. .+. ..... .+.|.... ..+|.+........ +..|+.++|.|.+.+.++ ..
T Consensus 81 ~v~~~D-~G~Y~C~~~~~-~~~~~~~~~~~~---~l~V~~~~-~~~P~i~~~~~~~~-~~~g~~v~l~C~~~~~~p~~~~ 153 (215)
T 3nl4_H 81 SPTTED-TATYFCVRKYG-SEWGGDLWGPGT---LVTVSSGQ-PKAPSVFPLAPCCG-DTPSSTVTLGCLVKGYLPEPVT 153 (215)
T ss_dssp SCCGGG-CEEEEEEEECS-SSSCEEEECCCE---EEEECSSC-CBCCEEEEECCCTT-CCC--CEEEEEEEEEEBSSCCE
T ss_pred CCCccc-CEEEEEEEecC-CCccceEEcCCE---EEEEeCCC-cCCCEEEEecCCcc-ccCCCcEEEEEEEeeeeCCCeE
Confidence 999999 99999999876 331 12222 55554211 13455543333333 678999999999988544 35
Q ss_pred eEEEeCCcccccCC--ceEEecceEEE---eccCCCCCeEEEEEEEcCCCCceeEEEEEE
Q psy14542 254 IKWYKQDSPVEESD--RIQRIGSSLSI---SHVEESDSGVWNCVANNSEGQDKMQLFIQY 308 (371)
Q Consensus 254 v~W~~~~~~~~~~~--~~~~~~~~l~i---~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 308 (371)
+.|++++..+.... .....++.+.+ ..+...| |.|+|.|.|..+.......|.+
T Consensus 154 v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~l~v~~~d-g~ytC~v~~~~~~~~~~~~l~~ 212 (215)
T 3nl4_H 154 VTWNSGTLTNGVRTFPSVRQSSGLYSLSSVVSVTSSS-QPVTCNVAHPATNTKVDKTVAP 212 (215)
T ss_dssp EEEGGGTBCTTEEECCCEECTTSCEEEEEEEEECC----CCEEEEEEGGGTEEEEEECCS
T ss_pred EEEeeCCEECCeEecCceECCCCCEEEEEEEEEeccC-CEEEEEEEeCCCCcceEEecCC
Confidence 78999887543221 11122344444 4466677 9999999999988766655543
No 334
>3nfj_J T cell receptor beta chain; immunoglobulin family, immune system; 2.68A {Homo sapiens} PDB: 3hg1_E
Probab=99.71 E-value=2e-16 Score=129.12 Aligned_cols=183 Identities=15% Similarity=0.142 Sum_probs=110.0
Q ss_pred eeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEec----cceEEEEEe
Q psy14542 106 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLS----SGELIIHQV 181 (371)
Q Consensus 106 ~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~----~~~l~i~~~ 181 (371)
..+.+|+.++|.|.+.+.+. +.+.|+|.... ......+......... . ...+++.+.. +..|.|.++
T Consensus 11 v~v~~G~~v~L~C~~~~~~~-~~v~W~k~~~~--~~~~~~~~~~~~~~~~-~-----~~~~R~~~~~~~~~~~sL~I~~v 81 (245)
T 3nfj_J 11 LVQPVGSPLSLECTVEGTSN-PNLYWYRQAAG--RGLQLLFYSVGIGQIS-S-----EVPQNLSASRPQDRQFILSSKKL 81 (245)
T ss_dssp EEEETTCCEEEEEEEESCSS-CEEEEEEESTT--SCEEEEEEESSTTCCB-C-----SSCCSSEEEEEETTEEEEEESSC
T ss_pred EEecCCCCEEEEEEecCCCC-ceEEEEEECCC--CCcEEEEEECCCcccC-C-----ccCCcEEEEecCCCEEEEEECCC
Confidence 34589999999999988766 89999983210 0001111111100000 0 0012333322 357999999
Q ss_pred ecCCccceeEEEeecc-----ccceeeeeeccceeeeecch-hccccceeeeeeeeeeeecCCeEEEEEEeecC-CCC-c
Q psy14542 182 DESDRYRSYQCRGVNK-----LTGASLLSVNRGRLSLTENK-RLLSAAKMFEKHRILNVKKDESVILPCSAQGN-PLP-T 253 (371)
Q Consensus 182 ~~~d~~g~y~C~~~~~-----~~~~~~~~~~~~~l~v~~~~-~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~~-~ 253 (371)
+.+| +|.|.|.+.+. ......... .+.|.... ...+|.+.........+..|+.+.|.|.+.+. |++ .
T Consensus 82 ~~~D-~G~Y~C~~~~~~g~~~~~~~~~~~~---~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~ 157 (245)
T 3nfj_J 82 LLSD-SGFYLCAWSVSVGAGVPTIYFGEGS---WLTVVEDLNKVFPPEVAVFEPSEAEISHTQKATLVCLATGFFPDHVE 157 (245)
T ss_dssp CGGG-CEEEEEEEECCTTTSSCCCEECCCE---EEEEESCGGGCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEE
T ss_pred Chhh-CEEEEEEEeeccCCCceeEEECCCe---EEEEEcccCCCCCCceEeecCCcccccCCCceEEEEEEccCcCCCEE
Confidence 9999 99999999982 011222222 55555310 11345544332222114569999999999984 444 6
Q ss_pred eEEEeCCcccccCCce---------------EEecceEEEeccCCCC-CeEEEEEEEcCCCCce
Q psy14542 254 IKWYKQDSPVEESDRI---------------QRIGSSLSISHVEESD-SGVWNCVANNSEGQDK 301 (371)
Q Consensus 254 v~W~~~~~~~~~~~~~---------------~~~~~~l~i~~~~~~d-~G~Y~C~a~n~~g~~~ 301 (371)
+.|+++|..+...... ....+.|.|.....+| .|.|+|.|.|......
T Consensus 158 v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~~YtC~v~~~~~~~~ 221 (245)
T 3nfj_J 158 LSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLSEN 221 (245)
T ss_dssp EEEEETTEEECTTEEECSSCEESSSSSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBCSS
T ss_pred EEEEECCEECCCCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCeEEEEEEECCCCCc
Confidence 8999999877543211 1122468888888888 7799999999876544
No 335
>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus}
Probab=99.71 E-value=1.2e-17 Score=134.87 Aligned_cols=176 Identities=12% Similarity=0.178 Sum_probs=112.0
Q ss_pred cceEEEeCCCcEEEeccCcEEEEEEecCCCCC--CeeEEEeCCEEE-eeC-------------CeeEEEEccCCcCCCeE
Q psy14542 10 SLSIEMSPSGQVVVDVGHRIELHCRVSPKRLS--SAKAWLKDGLVL-RRN-------------SDEVLVLDRVQREDAGM 73 (371)
Q Consensus 10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~--~~~~W~~~~~~~-~~~-------------~~~~l~i~~~~~~d~G~ 73 (371)
+|.+.+.+.....+.+|+.++|.|.+....|. ..+.|+++|..+ ... ....|.|.+++.+|+|.
T Consensus 12 ~P~v~~~~p~~~~v~~G~~v~L~C~~~g~~P~~p~~v~W~~~g~~~~~~~~~~~~~~~~g~~~~~s~L~I~~~~~~D~g~ 91 (231)
T 2w59_A 12 PIQLYAIPPSPGELYISLDAKLRCLVVNLPSDSSLSVTWTREKSGNLRPDPMVLQEHFNGTYSASSAVPVSTQDWLSGER 91 (231)
T ss_dssp CCEEEEECCCHHHHHTSCCCEEEEEEEEESCCTTCEEEEECSSSSCCCCCCCEEEECTTSCEEEEEEEECCHHHHHTTCC
T ss_pred CCEEEEeCcChhhcccCCceEEEEEEeCccCCCCeEEEEEcCCeeccccccccceECCCCcEEEEEEEEecchhccCCCE
Confidence 45666544443667899999999976554563 489999988765 211 12469999999999999
Q ss_pred EEEEEEcCCCCeEEEEEEEEe---cceeeEec-CCceeeecCCcEEEEEEecCCCC-CceEEEeeCCEEeeeCCeeE--E
Q psy14542 74 YQCHVSADDDSAQMSAQVILG---GELVEIAS-SNQVVVDVGHRIELHCRVSPKRL-SSAKAWLKDGLVLRRNSDEV--L 146 (371)
Q Consensus 74 Y~C~~~~~~~~~~~~~~l~v~---~~~~~~~~-~~~~~~~~g~~v~l~C~~~~~~~-~~~v~W~~~~~~~~~~~~~~--~ 146 (371)
|+|.+.+..+.......|.+. ..+|.+.. .+......|..++|.|.+.+.++ .+.++|+++|..+....... .
T Consensus 92 Y~C~~~~~~~~~~~~~~v~~~~~~~~~P~v~v~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~ 171 (231)
T 2w59_A 92 FTCTVQHEELPLPLSKSVYRNTGPTTPPLIYPFAPHPEELSLSRVTLSCLVRGFRPRDIEIRWLRDHRAVPATEFVTTAV 171 (231)
T ss_dssp EEEEEECTTCSSCEEEEECCCCSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEECCGGGCEECCC
T ss_pred EEEEEEcCCCCCceEEEEecCCCCCcCCEEEEeCCCHHHhccCceEEEEEEEeccCCCcEEEEEECCEECCCcccccCcc
Confidence 999999876554333333221 12333322 11111123567999999988643 37999999999886543110 0
Q ss_pred EEcccCcC---CC-eeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeecc
Q psy14542 147 VLDRVQRE---DA-GMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNK 197 (371)
Q Consensus 147 ~~~~~~~~---~~-g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~ 197 (371)
........ .. |.| ... +.|.|......| .|.|+|.|.|.
T Consensus 172 ~~~~~~~~~~~~d~gt~---------~~~--s~L~i~~~~~~~-~g~YtC~v~n~ 214 (231)
T 2w59_A 172 LPEERTANGAGGDGDTF---------FVY--SKMSVETAKWNG-GTVFACMAVHE 214 (231)
T ss_dssp EECCTTSCC---CCCCE---------EEE--EEEEEEHHHHHT-TCCEEEEEECT
T ss_pred ccCcccccccCCCCCeE---------EEE--EEEEEeHHHcCC-CCcEEEEEEcC
Confidence 00000000 11 322 222 578888888888 99999999987
No 336
>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B
Probab=99.71 E-value=3.1e-16 Score=125.84 Aligned_cols=159 Identities=16% Similarity=0.226 Sum_probs=104.1
Q ss_pred EEEeccCcEEEEEEecCC-CCCCeeEEEeC--CE--E-Ee--------------e-------------CCeeEEEEccCC
Q psy14542 21 VVVDVGHRIELHCRVSPK-RLSSAKAWLKD--GL--V-LR--------------R-------------NSDEVLVLDRVQ 67 (371)
Q Consensus 21 ~~~~~G~~v~l~C~~~~~-~~~~~~~W~~~--~~--~-~~--------------~-------------~~~~~l~i~~~~ 67 (371)
+.+.+|++++|.|.+... .+...+.|+|. +. . +. . ....+|.|.+++
T Consensus 10 ~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~ 89 (221)
T 3m8o_H 10 GLVQPGGSLKLSCAASGFTLSGSNVHWVRQASGKGLEWVGRIKRNAESDATAYAASMRGRLTISRDDSKNTAFLQMNSLK 89 (221)
T ss_dssp EEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECCGGGTTCEEECGGGTTSEEEEEEGGGTEEEEEECSCC
T ss_pred EEEcCCCCEEEEEEcccccccccEEEEEEECCCCCcEEEEEEcccccCcccccCccccccEEEEecCCCCEEEEEECCCC
Confidence 789999999999976532 23578999972 11 1 10 0 034479999999
Q ss_pred cCCCeEEEEEEEcCC--CCeEEEEEEEEec---ceeeEe-cCCceeeecCCcEEEEEEecC-CCC-CceEEEeeCCEEee
Q psy14542 68 REDAGMYQCHVSADD--DSAQMSAQVILGG---ELVEIA-SSNQVVVDVGHRIELHCRVSP-KRL-SSAKAWLKDGLVLR 139 (371)
Q Consensus 68 ~~d~G~Y~C~~~~~~--~~~~~~~~l~v~~---~~~~~~-~~~~~~~~~g~~v~l~C~~~~-~~~-~~~v~W~~~~~~~~ 139 (371)
.+|+|.|.|.+.+.. ........|.|.. .+|.+. ..+... .+|+.++|.|.+.+ .|. ++.+.|++++..+.
T Consensus 90 ~~DsG~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~-~~g~~v~L~C~~~~~~P~~~~~v~W~~~g~~~~ 168 (221)
T 3m8o_H 90 SDDTAMYYCVIRGDVYNRQWGQGTLVTVSSASPTSPKVFPLSLCST-QPDGNVVIACLVQGFFPQEPLSVTWSESGQGVT 168 (221)
T ss_dssp GGGCEEEEEEEESCTTCCCBBCCEEEEECSCCCBCCEEEEEECCSC-CCTTEEEEEEEEEEEBSSCSEEEEESCCSTTCE
T ss_pred HHHCEEEEEEEECCChhheECCCEEEEEecCCCCCCeEEEecCccc-ccCCCEEEEEEEEeeECCCCEEEEEEECCEECc
Confidence 999999999998763 1223334566641 233333 222222 68999999999988 443 36999999887653
Q ss_pred eCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeecc
Q psy14542 140 RNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNK 197 (371)
Q Consensus 140 ~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~ 197 (371)
.... ........| .+... +.|.|.....+| .|.|+|.+.+.
T Consensus 169 ~~~~-----~~~~~~~~~---------~~~~~--s~L~i~~~~~~d-~g~ytC~v~~~ 209 (221)
T 3m8o_H 169 ARNF-----PPSQDASGD---------LYTTS--SQLTLPATQCLA-GKSVTCHVKHY 209 (221)
T ss_dssp EEEC-----CCEECSSSS---------CEEEE--EEEEEEGGGSCT-TCEEEEEEEET
T ss_pred eEEc-----CceeeCCCC---------cEEEE--EEEEECHHHcCC-CCeEEEEEEEC
Confidence 2110 000001223 33322 578899999989 99999999987
No 337
>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*
Probab=99.70 E-value=2.7e-16 Score=126.02 Aligned_cols=162 Identities=15% Similarity=0.212 Sum_probs=106.7
Q ss_pred EEEeccCcEEEEEEecCCC-CCCeeEEEeCC--E---EEe---------------eC----------CeeEEEEccCCcC
Q psy14542 21 VVVDVGHRIELHCRVSPKR-LSSAKAWLKDG--L---VLR---------------RN----------SDEVLVLDRVQRE 69 (371)
Q Consensus 21 ~~~~~G~~v~l~C~~~~~~-~~~~~~W~~~~--~---~~~---------------~~----------~~~~l~i~~~~~~ 69 (371)
+.+.+|++++|.|.+.... ....+.|+|.. . .+. .. ...+|.|.+++.+
T Consensus 10 ~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~ 89 (220)
T 2fbj_H 10 GLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKVRSE 89 (220)
T ss_dssp EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSCCGG
T ss_pred eEecCCCcEEEEEEecCccCCCceEEEEEECCCCCeEEEEEEccCCCceecCCccCCcEEEEeeCCCCEEEEEECCCChh
Confidence 7899999999999765322 25679999842 1 111 00 2458999999999
Q ss_pred CCeEEEEEEEcCCCC---eEEEEEEEEec---ceeeEecCCceeeecCCcEEEEEEecCCCC--CceEEEeeCCEEeeeC
Q psy14542 70 DAGMYQCHVSADDDS---AQMSAQVILGG---ELVEIASSNQVVVDVGHRIELHCRVSPKRL--SSAKAWLKDGLVLRRN 141 (371)
Q Consensus 70 d~G~Y~C~~~~~~~~---~~~~~~l~v~~---~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~--~~~v~W~~~~~~~~~~ 141 (371)
|+|.|.|.+.+..+. ......|.|.. .+|.+...+...+..|+.++|.|.+.+..+ ++.+.|++++..+...
T Consensus 90 DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~g~~v~L~C~~~g~~P~~~~~v~W~~~~~~~~~~ 169 (220)
T 2fbj_H 90 DTALYYCARLHYYGYNAYWGQGTLVTVSAESARNPTIYPLTLPPALSSDPVIIGCLIHDYFPSGTMNVTWGKSGKDITTV 169 (220)
T ss_dssp GCEEEEEEEEETTTEEEEECCCEEEEECSSCCBCCEEEEECCCSSSCCSSEEEEEEEEEEBSCCCEEEEESCCCSSCEEE
T ss_pred hCEEEEEEEeccccccceecCCEEEEecCCCCCCCEEEEeecccccCCCcEEEEEEEEeEECCCcEEEEEecCCEecceE
Confidence 999999999876432 11235677763 234443333223468999999999987633 3799999988754210
Q ss_pred CeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccce
Q psy14542 142 SDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGA 201 (371)
Q Consensus 142 ~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~ 201 (371)
. ........| .+... +.|.|......| .|.|+|.+.|. .+.
T Consensus 170 ~------~~~~~~~~g---------~~~~~--s~L~i~~~~~~d-~g~ytC~v~n~-~~~ 210 (220)
T 2fbj_H 170 N------FPPALASGG---------RYTMS--NQLTLPAVECPE-GESVKCSVQHD-SNP 210 (220)
T ss_dssp E------CCCEECSSS---------CEEEE--EEEEECGGGSCT-TCEEEEEEEET-TSC
T ss_pred e------cCceECCCC---------CEEEE--EEEEECHHHcCC-CCeEEEEEEcC-CCc
Confidence 0 000001222 33322 568888888888 99999999998 544
No 338
>3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H
Probab=99.70 E-value=1.8e-16 Score=129.94 Aligned_cols=193 Identities=16% Similarity=0.181 Sum_probs=114.1
Q ss_pred CceeeecCCcEEEEEEecCCC-CCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEec-----cceEE
Q psy14542 104 NQVVVDVGHRIELHCRVSPKR-LSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLS-----SGELI 177 (371)
Q Consensus 104 ~~~~~~~g~~v~l~C~~~~~~-~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~-----~~~l~ 177 (371)
....+.+|++++|.|.+.+.. ....+.|+|..... .......+.... .. .+......+++.+.. +..|.
T Consensus 8 ~~v~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~--~~~~~~~~~~~~--~~-~~~~~~~~~R~~~~~~~~~~~~sL~ 82 (253)
T 3liz_H 8 GGGLVQPGGSLKLSCAASGFTFSSFAMSWGRQTPDK--RLELVATINSNG--AS-TYYPDTVKGRFTISRDNAKNTLFLQ 82 (253)
T ss_dssp CCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTS--CEEEEEEECTTS--SC-EECCTTTTTTCEEEEEGGGTEEEEE
T ss_pred CCEEECCCCcEEEEEEeeCccccCceEEEEEECCCC--CcEEEEEEecCC--Cc-cccCcccCCcEEEEEeCCCCEEEEE
Confidence 344558999999999997632 22689999843100 001111111000 00 000000022444332 24599
Q ss_pred EEEeecCCccceeEEEeeccc---cceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeec-CCCC-
Q psy14542 178 IHQVDESDRYRSYQCRGVNKL---TGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQG-NPLP- 252 (371)
Q Consensus 178 i~~~~~~d~~g~y~C~~~~~~---~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~- 252 (371)
|.+++.+| +|.|.|.+.+.. ........ .+.|... ...+|.+........ +..|+.+.|.|.+.+ .|.+
T Consensus 83 I~~v~~~D-sG~Y~C~~~~~~~~~~~~~~~~~---~l~V~~~-~~~~P~i~~~~~~~~-~~~g~~v~L~C~~~g~~P~~~ 156 (253)
T 3liz_H 83 MSSLKSED-TAMYYCTRDPAGRAWFAYWGQGT---LVTVSAA-KTTPPSVYPLAPGSA-AQTNSMVTLGCLVKGYFPEPV 156 (253)
T ss_dssp ECSCCGGG-CEEEEEEECCBTTTBCCEECCCE---EEEECSS-CCBCCEEEEECC-------CCEEEEEEEEEEEBSSCC
T ss_pred ECCCChhh-CEEEEEEEecCCcceeeEECCCE---EEEEecc-CCCCCeEEEecCCcc-cCCCCcEEEEEEEeeEeCCCe
Confidence 99999999 999999998751 11112222 5555421 114555553333333 667999999999998 6766
Q ss_pred ceEEEeCCcccc--------cCCceEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEe
Q psy14542 253 TIKWYKQDSPVE--------ESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYA 309 (371)
Q Consensus 253 ~v~W~~~~~~~~--------~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 309 (371)
.+.|++++..+. ..+.+ ...+.|.|.....+| |.|+|.|.|..+.......|.+.
T Consensus 157 ~v~W~~~~~~~~~~~~~~~~~~g~~-~~~s~L~i~~~~~~d-g~ytC~v~~~~~~~~~~~~~~~~ 219 (253)
T 3liz_H 157 TVTWNSGSLSSGVHTFPAVLQSDLY-TLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDKKIVPR 219 (253)
T ss_dssp EEEEGGGTBCTTEEECCCEEETTEE-EEEEEEEEETTSTTT-SCCEEEEEEGGGTEEEEEECCCC
T ss_pred EEEEEeCCeecceEeCCccccCCeE-EEEEEEEEcHHHCCC-ceEEEEEEECCCCcceEEEecCc
Confidence 899999887331 11112 223679999999999 99999999999987777776655
No 339
>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C
Probab=99.70 E-value=4.2e-16 Score=128.43 Aligned_cols=172 Identities=18% Similarity=0.275 Sum_probs=106.2
Q ss_pred eeeecCCcEEEEEEecCCCC-----CceEEEeeCC--EEeeeCCeeEEEEcc-cCcCCCeeEEEEEeCCceeEe---ccc
Q psy14542 106 VVVDVGHRIELHCRVSPKRL-----SSAKAWLKDG--LVLRRNSDEVLVLDR-VQREDAGMYQCHIEDGKYHML---SSG 174 (371)
Q Consensus 106 ~~~~~g~~v~l~C~~~~~~~-----~~~v~W~~~~--~~~~~~~~~~~~~~~-~~~~~~g~y~~~~~~~~~~~~---~~~ 174 (371)
..+.+|++++|.|.+.+.+. .+.+.|++.. ..+. ..+.... ......+ ++.+. ...
T Consensus 15 v~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~----~l~~~~~~~~~~~~~---------R~~~~~~~~~~ 81 (264)
T 2gjj_A 15 LPVSVGEKVTMTCKSSQTLLYSNNQKNYLAWYQQKPGQSPK----LLISWAFTRKSGVPD---------RFTGSGSGTDF 81 (264)
T ss_dssp EEEETTCCEEEEEEESSCCEETTTTEECEEEEEECTTSCCE----EEEETTTEECTTSCT---------TEEEEEETTEE
T ss_pred EEecCCCcEEEEeEcCCcccccccCCceEEEEEECCCCCcE----EEEEecccCCCCCCc---------cEEEecCCCEE
Confidence 34589999999999988761 3789999852 2110 0000000 0000112 33222 125
Q ss_pred eEEEEEeecCCccceeEEEeeccccce-eeeeeccceeeeecchh-------------ccccceee-eeeeeeeeecCCe
Q psy14542 175 ELIIHQVDESDRYRSYQCRGVNKLTGA-SLLSVNRGRLSLTENKR-------------LLSAAKMF-EKHRILNVKKDES 239 (371)
Q Consensus 175 ~l~i~~~~~~d~~g~y~C~~~~~~~~~-~~~~~~~~~l~v~~~~~-------------~~~p~~~~-~~~~~~~~~~g~~ 239 (371)
.|.|.+++.+| +|.|.|.+.+. .+. ..... .|.|...+. ...|.+.. .+.... +..|++
T Consensus 82 ~L~I~~v~~~D-sG~Y~C~~~~~-~~~~~~~~~---~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~G~~ 155 (264)
T 2gjj_A 82 TLTIGSVKAED-LAVYYCQQYSN-YPWTFGGGT---RLEIKRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPEV-VKTGAS 155 (264)
T ss_dssp EEEESSCCGGG-CEEEEEEECSS-SSCEECCCE---EEEEECC-------------------CCEEEECCCEE-ECTTCC
T ss_pred EEEECCCCHHH-CEEEEEEEecC-CccEecCCE---EEEEEcCCcccccccccccccccccCcEEEeCCCCEE-EcCCCc
Confidence 79999999999 99999999886 331 22222 566663210 00122222 222234 899999
Q ss_pred EEEEEEeecCCC--CceEEEeCC--cccc-----------------cCCceEEe------cceEEEeccCCCCCeEEEEE
Q psy14542 240 VILPCSAQGNPL--PTIKWYKQD--SPVE-----------------ESDRIQRI------GSSLSISHVEESDSGVWNCV 292 (371)
Q Consensus 240 ~~l~C~~~~~p~--~~v~W~~~~--~~~~-----------------~~~~~~~~------~~~l~i~~~~~~d~G~Y~C~ 292 (371)
++|.|.+.+.+. +.+.|+++. ..+. ...++... ..+|.|.++..+|+|.|.|.
T Consensus 156 v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~ 235 (264)
T 2gjj_A 156 VKISCKASGYSFTGYFINWVKKNSGKSPEWIGHISSSYATSTYNQKFKNKAAFTVDTSSSTAFMQLNSLTSEDSADYYCV 235 (264)
T ss_dssp EEEEEEEESSCGGGSEEEEEEECTTSCCEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEE
T ss_pred EEEEEEEeCCccCCeEEEEEEECCCCCcEEEEEEeccCcccccCcccCCceEEEEcCCCCEEEEEECcCCcccCEEEEEE
Confidence 999999998764 789999863 2211 02333321 24799999999999999999
Q ss_pred EEcC
Q psy14542 293 ANNS 296 (371)
Q Consensus 293 a~n~ 296 (371)
+.|.
T Consensus 236 a~n~ 239 (264)
T 2gjj_A 236 RSGN 239 (264)
T ss_dssp EECS
T ss_pred EecC
Confidence 9985
No 340
>3nl4_H Antigen binding fragment,immunoglobulin IGG - HEA; FAB, rabbit, conformation-specific, amyloid, immune system; 1.54A {Oryctolagus cuniculus} PDB: 4hbc_H
Probab=99.70 E-value=5.3e-16 Score=123.88 Aligned_cols=121 Identities=16% Similarity=0.194 Sum_probs=80.4
Q ss_pred CCCcEEEeccCcEEEEEEecC-CCCCCeeEEEeCC-----EEEe----------------------eCCeeEEEEccCCc
Q psy14542 17 PSGQVVVDVGHRIELHCRVSP-KRLSSAKAWLKDG-----LVLR----------------------RNSDEVLVLDRVQR 68 (371)
Q Consensus 17 p~~~~~~~~G~~v~l~C~~~~-~~~~~~~~W~~~~-----~~~~----------------------~~~~~~l~i~~~~~ 68 (371)
|.. +.+.+|++++|.|.+.. ..+...+.|+|.. ..+. .....+|.|.+++.
T Consensus 6 p~~-~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~ 84 (215)
T 3nl4_H 6 SGG-RLVTPGTPLTLACTVSGFSLNTYSMFWVRQAPGKGLQWIGIISNFGVIYYATWAKGRFTISKTSTTVDLKITSPTT 84 (215)
T ss_dssp ECC-CEECTTCCEEEEEEEESSCTTTCCEEEEEECTTSCEEEEEEECTTCCEEECGGGTTTEEEEECSSEEEEEESSCCG
T ss_pred CCC-EEEcCCCcEEEEEEecCcccCCCeEEEEEECCCCCeEEEEEEecCCccccCCcccCCEEEEeeCCEEEEEECCCCc
Confidence 444 78999999999997653 2345779999731 1110 01445799999999
Q ss_pred CCCeEEEEEEEcCCCC----eEEEEEEEEec---ceeeEe-cCCceeeecCCcEEEEEEecCCCC-CceEEEeeCCEEe
Q psy14542 69 EDAGMYQCHVSADDDS----AQMSAQVILGG---ELVEIA-SSNQVVVDVGHRIELHCRVSPKRL-SSAKAWLKDGLVL 138 (371)
Q Consensus 69 ~d~G~Y~C~~~~~~~~----~~~~~~l~v~~---~~~~~~-~~~~~~~~~g~~v~l~C~~~~~~~-~~~v~W~~~~~~~ 138 (371)
+|+|.|.|.+.+..+. ......|.|.. .+|.+. ..+...+..|+.++|.|.+.+.++ +..+.|++++..+
T Consensus 85 ~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~l~C~~~~~~p~~~~v~W~~~g~~~ 163 (215)
T 3nl4_H 85 EDTATYFCVRKYGSEWGGDLWGPGTLVTVSSGQPKAPSVFPLAPCCGDTPSSTVTLGCLVKGYLPEPVTVTWNSGTLTN 163 (215)
T ss_dssp GGCEEEEEEEECSSSSCEEEECCCEEEEECSSCCBCCEEEEECCCTTCCC--CEEEEEEEEEEBSSCCEEEEGGGTBCT
T ss_pred ccCEEEEEEEecCCCccceEEcCCEEEEEeCCCcCCCEEEEecCCccccCCCcEEEEEEEeeeeCCCeEEEEeeCCEEC
Confidence 9999999999886542 22334566652 233333 333334467999999999987543 3678899988643
No 341
>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}
Probab=99.70 E-value=5.7e-16 Score=129.61 Aligned_cols=203 Identities=16% Similarity=0.244 Sum_probs=115.6
Q ss_pred CceeeecCCcEEEEEEecCCCC-CceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEec-----cceEE
Q psy14542 104 NQVVVDVGHRIELHCRVSPKRL-SSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLS-----SGELI 177 (371)
Q Consensus 104 ~~~~~~~g~~v~l~C~~~~~~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~-----~~~l~ 177 (371)
+...+.+|++++|.|.+.+.+. ...+.|++.... ......+...... ....+. ....+++.+.. ...|.
T Consensus 30 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~--~~~~~l~~~~~~~--~~~~~~-~~~~~R~~~~~~~~~~~~sL~ 104 (291)
T 2gki_A 30 GPELVKPGASVKMSCKASGYTFTSYVMHWVKQKPG--QGLEWIGYINPYN--DGTKYN-EKFKGKATLTSDKSSSTAYME 104 (291)
T ss_dssp CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTT--SCCEEEEEEETTT--TEEEEC-GGGBTTBCEEEEGGGTEEEEE
T ss_pred CcEEecCCCCEEEEEeccCCcccccEEEEEEECCC--CCcEEEEEEecCC--CccccC-cccCCCEEEEEeCCCCEEEEE
Confidence 3445589999999999987652 378999985310 0001111111000 000000 00012333321 25799
Q ss_pred EEEeecCCccceeEEEeeccccceee-eeeccceeeeecc-----------hhccccceeeeeeeeeeeecCCeEEEEEE
Q psy14542 178 IHQVDESDRYRSYQCRGVNKLTGASL-LSVNRGRLSLTEN-----------KRLLSAAKMFEKHRILNVKKDESVILPCS 245 (371)
Q Consensus 178 i~~~~~~d~~g~y~C~~~~~~~~~~~-~~~~~~~l~v~~~-----------~~~~~p~~~~~~~~~~~~~~g~~~~l~C~ 245 (371)
|.+++.+| +|.|.|.+.+...+... .......|.|... ....++.+...+.... +.+|++++|.|.
T Consensus 105 I~~v~~~D-sG~Y~C~~~~~~~g~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~-v~~G~~v~L~C~ 182 (291)
T 2gki_A 105 LSSLTSED-SAVYYCARGAYKRGYAMDYWGQGTSVTVSSRGGGGSGGGGSGGGGSDLVMSQSPSSLA-VSAGEKVTMSCK 182 (291)
T ss_dssp ECSCCGGG-CEEEEEEEECGGGTTCEEEECCCEEEEECC----------------CCCEECSCSEEE-EETTSCEEEEEE
T ss_pred ECcCCHHH-CEEEEEEEeccccccccceeCCCcEEEEecCCccccccccCCCCCccceEEcCCCEEE-EcCCCcEEEEEE
Confidence 99999999 99999999987212111 1001125666531 0001233333344445 899999999999
Q ss_pred eecCCCC------ceEEEeCC--cccc------------cCCceEE--e--cceEEEeccCCCCCeEEEEEEEcCCCCc-
Q psy14542 246 AQGNPLP------TIKWYKQD--SPVE------------ESDRIQR--I--GSSLSISHVEESDSGVWNCVANNSEGQD- 300 (371)
Q Consensus 246 ~~~~p~~------~v~W~~~~--~~~~------------~~~~~~~--~--~~~l~i~~~~~~d~G~Y~C~a~n~~g~~- 300 (371)
+.+.+.+ .+.|+++. ..+. ...++.. . ..+|.|.++..+|+|.|+|.|.|.....
T Consensus 183 ~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~f 262 (291)
T 2gki_A 183 SSQSLFNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTISSVQAEDLAVYYCKQSYYHMYTF 262 (291)
T ss_dssp ESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEEEETTEEEE
T ss_pred cCCccccccccceeEEEEEECCCCCcEEEEEEcccCCCCcCCCEEEEecCCEEEEEECCCCHHHCEEEEEEEccCCceEE
Confidence 9888765 89999963 2211 0234432 1 2379999999999999999999854321
Q ss_pred eeEEEEEEecCcc
Q psy14542 301 KMQLFIQYAHGKY 313 (371)
Q Consensus 301 ~~~~~l~v~~~p~ 313 (371)
..-..|.|...+.
T Consensus 263 g~gt~l~v~~~~~ 275 (291)
T 2gki_A 263 GSGTKLEIKHHHH 275 (291)
T ss_dssp CCCEEEEEECC--
T ss_pred cCCEEEEEEeeEc
Confidence 1223455655555
No 342
>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D*
Probab=99.70 E-value=8.4e-17 Score=130.31 Aligned_cols=168 Identities=12% Similarity=0.170 Sum_probs=106.5
Q ss_pred eecCCcEEEEEEecCC---CCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecC
Q psy14542 108 VDVGHRIELHCRVSPK---RLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDES 184 (371)
Q Consensus 108 ~~~g~~v~l~C~~~~~---~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~ 184 (371)
+.+|+.++|.|.+.+. |.+..++|++++..+...... .......| ++. ..+.|.|.+++.+
T Consensus 29 v~~G~~v~L~C~~~g~~~~P~~~~v~W~k~~~~~~~~~~~-----~~~~~~~~---------~~~--~~s~L~I~~~~~~ 92 (239)
T 1i1c_A 29 LGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTH-----APEKQSNS---------TLR--SVSELPIVERDWL 92 (239)
T ss_dssp TTSSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEEC-----CCEECTTS---------CEE--EEEEEECCHHHHH
T ss_pred cccCCcEEEEEEEecCccCCCCCEEEEEECCccccCcccc-----cceEcCCC---------cEE--EEEEEEEEhhHcc
Confidence 4689999999999876 543489999988665432110 00001112 222 2257999999999
Q ss_pred CccceeEEEeeccccceeeeeecccee--eeecchhccccceeeeeeeeeeeecCCeEEEEEEeec-CCC-CceEEEeCC
Q psy14542 185 DRYRSYQCRGVNKLTGASLLSVNRGRL--SLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQG-NPL-PTIKWYKQD 260 (371)
Q Consensus 185 d~~g~y~C~~~~~~~~~~~~~~~~~~l--~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~-~~v~W~~~~ 260 (371)
| .|.|+|.+.+. .+...... ...+ .+. .+|.+...+.... ...|+.+.|.|.+.| +|. ..+.|+++|
T Consensus 93 D-~g~Y~C~~~~~-~~~~~~~~-~v~~~~~~~-----~~P~v~v~~~~~~-~~~g~~~~L~C~~~g~~P~~~~v~W~k~g 163 (239)
T 1i1c_A 93 N-GKTFKCKVNSG-AFPAPIEK-SISKPEGTP-----RGPQVYTMAPPKE-EMTQSQVSITCMVKGFYPPDIYTEWKMNG 163 (239)
T ss_dssp T-TCCEEEEEECS-SSSSCEEE-EECCCSSCC-----BCCEEEEECCCGG-GGGSSEEEEEEEEEEEBSSCCEEEEEETT
T ss_pred C-CCeEEEEEecc-cCCCCcEE-EEecCCCCC-----cCCEEEEECCChH-HhcCCcEEEEEEEeeeECCCeEEEEEECC
Confidence 9 99999999987 44321111 0011 222 5666655444332 345789999999998 454 479999999
Q ss_pred cccccCCc--eE-Eecc------eEEEeccCCCCCeEEEEEEEcCCCCc
Q psy14542 261 SPVEESDR--IQ-RIGS------SLSISHVEESDSGVWNCVANNSEGQD 300 (371)
Q Consensus 261 ~~~~~~~~--~~-~~~~------~l~i~~~~~~d~G~Y~C~a~n~~g~~ 300 (371)
..+..... .. ..++ .|.|.....+|.|.|+|.|.|.....
T Consensus 164 ~~l~~~~~~~~~~~~dgt~~~~s~l~v~~~~~~~~g~YtC~v~n~~l~~ 212 (239)
T 1i1c_A 164 QPQENYKNTPPTMDTDGSYFLYSKLNVKKETWQQGNTFTCSVLHEGLEN 212 (239)
T ss_dssp EECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTSGG
T ss_pred EECCCceecCceECCCCCEEEEEEEEEChhhcCCCCEEEEEEECCCCCC
Confidence 87754321 11 1222 34555555567999999999987654
No 343
>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H
Probab=99.70 E-value=6e-16 Score=124.22 Aligned_cols=163 Identities=15% Similarity=0.224 Sum_probs=105.4
Q ss_pred EEEeccCcEEEEEEecCCC-CCCeeEEEeCC-----EEEe---------------eC----------CeeEEEEccCCcC
Q psy14542 21 VVVDVGHRIELHCRVSPKR-LSSAKAWLKDG-----LVLR---------------RN----------SDEVLVLDRVQRE 69 (371)
Q Consensus 21 ~~~~~G~~v~l~C~~~~~~-~~~~~~W~~~~-----~~~~---------------~~----------~~~~l~i~~~~~~ 69 (371)
+.+.+|++++|.|.+.... ....+.|+|.. ..+. .. ...+|.|.+++.+
T Consensus 10 ~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~ 89 (223)
T 1dee_B 10 GVVQPGKSLRLSCAASGFTFSGYGMHWVRQAPGKGLEWVALISYDESNKYYADSVKGRFTISRDNSKNTLYLQMNSLRAE 89 (223)
T ss_dssp CEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSCCEEECTTTBTTEEEEEETTTTEEEEEECSCCGG
T ss_pred EEEcCCCcEEEEEEecCcccCCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCeEEEEecCCCCEEEEEECCCCHH
Confidence 7899999999999765332 24679999842 1110 00 2468999999999
Q ss_pred CCeEEEEEEEcCCC---C---eEEEEEEEEec---ceeeEec-CCceeeecCCcEEEEEEecCC-CCCceEEEee-CCEE
Q psy14542 70 DAGMYQCHVSADDD---S---AQMSAQVILGG---ELVEIAS-SNQVVVDVGHRIELHCRVSPK-RLSSAKAWLK-DGLV 137 (371)
Q Consensus 70 d~G~Y~C~~~~~~~---~---~~~~~~l~v~~---~~~~~~~-~~~~~~~~g~~v~l~C~~~~~-~~~~~v~W~~-~~~~ 137 (371)
|+|.|.|.+.+..+ . ....+.|.|.. .+|.+.. .+...+..|+.++|.|.+.+. |.+..+.|++ ++..
T Consensus 90 D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~g~~ 169 (223)
T 1dee_B 90 DTAVYYCAKVKFYDPTAPNDYWGQGTLVTVSSGSASAPTLFPLVSCENSNPSSTVAVGCLAQDFLPDSITFSWKYKNNSD 169 (223)
T ss_dssp GCEEEEEEEESSSSTTCCEEEECCCEEEEECSSCCBCCEEEEEECTTCCCSSSEEEEEEEEEEEBSSCCEEEEEETTSCB
T ss_pred HCEEEEEEEeccccCcccceeecCcEEEEEccCCCCCCEEEEecCCcccCCCCcEEEEEEEEEEeCCCeEEEeEccCCCc
Confidence 99999999987642 1 11234677763 2333332 222234689999999999887 5434999999 8876
Q ss_pred eeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeec--CCccceeEEEeecccccee
Q psy14542 138 LRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDE--SDRYRSYQCRGVNKLTGAS 202 (371)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~--~d~~g~y~C~~~~~~~~~~ 202 (371)
+... ...... ...| .+.. .+.|.|..... +| .|.|+|.+.|. .+..
T Consensus 170 l~~~----~~~~~~--~~~~---------~~~~--~s~L~i~~~~~~~~d-~g~y~C~v~n~-~~~~ 217 (223)
T 1dee_B 170 ISST----RGFPSV--LRGG---------KYAA--TSQVLLPSKDVAQGT-NEHVVCKVQHP-NGNK 217 (223)
T ss_dssp CSCE----EECCCE--EETT---------EEEE--EEEEEEECTTTTSTT-CCEEEEEEECT-TCCE
T ss_pred ccee----EECCcc--ccCC---------eEEE--EEEEEEcHHHhccCC-CCEEEEEEEeC-CCCC
Confidence 6430 000000 0113 3322 25688877765 67 89999999998 5443
No 344
>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A
Probab=99.70 E-value=5.6e-16 Score=126.00 Aligned_cols=181 Identities=14% Similarity=0.202 Sum_probs=107.9
Q ss_pred eeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEec----cceEEEEEe
Q psy14542 106 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLS----SGELIIHQV 181 (371)
Q Consensus 106 ~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~----~~~l~i~~~ 181 (371)
..+.+|+.++|.|.+.+ +. ..+.|+|.... ......+...+ ..........+++.+.. +..|.|.++
T Consensus 12 v~v~~G~~v~L~C~~~~-~~-~~v~W~k~~~~--~~~~~~~~~~~-----~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v 82 (240)
T 3q5y_A 12 IIKEKGGRSVLTCIPIS-GH-SNVVWYQQTLG--KELKFLIQHYE-----KVERDKGFLPSRFSVQQFDDYHSEMNMSAL 82 (240)
T ss_dssp EEEETTCCEEEEEECCT-TC-CEEEEEEECTT--SCCEEEEEEET-----TEEEEECSCCTTEEEEECTTSCEEEEECSC
T ss_pred eeecCCCcEEEEEEeCC-CC-ceEEEEEECCC--CCCEEEEEEcC-----CccccCcccCCeEEEEeCCCCEEEEEECcC
Confidence 34589999999999876 44 69999983210 00011111110 00000000112333332 357999999
Q ss_pred ecCCccceeEEEeecc--ccceeeeeeccceeeeecc-hhccccceeeee-eeeeeeecCCeEEEEEEeec-CCCC-ceE
Q psy14542 182 DESDRYRSYQCRGVNK--LTGASLLSVNRGRLSLTEN-KRLLSAAKMFEK-HRILNVKKDESVILPCSAQG-NPLP-TIK 255 (371)
Q Consensus 182 ~~~d~~g~y~C~~~~~--~~~~~~~~~~~~~l~v~~~-~~~~~p~~~~~~-~~~~~~~~g~~~~l~C~~~~-~p~~-~v~ 255 (371)
+.+| +|.|.|.+.+. ......... .+.|... ....+|.+.... .... +..|+.+.|.|.+.+ .|.+ .+.
T Consensus 83 ~~~D-~G~Y~C~~~~~~~~~~~~~~~~---~l~V~~~~~~~~~p~~~~~~~~~~~-~~~g~~v~L~C~~~g~~P~~~~v~ 157 (240)
T 3q5y_A 83 ELED-SAMYFCASSLRWGDEQYFGPGT---RLTVLEDLRNVTPPKVSLFEPSKAE-IANKQKATLVCLARGFFPDHVELS 157 (240)
T ss_dssp CGGG-CEEEEEEEESSTTBCCEECCCE---EEEEESCGGGCBCCEEEEECCCHHH-HHHHSEEEEEEEEEEEBSSCEEEE
T ss_pred ChhH-CEEEEEEEccCCCcceEEcCCE---EEEEeccccCCCCCeeEEeCCchhh-cccCCceEEEEEEeeEECCCeEEE
Confidence 9999 99999999732 111222222 5555521 111344444322 2223 567899999999988 5656 799
Q ss_pred EEeCCcccccCCce-----EEec------ceEEEeccCCCC-CeEEEEEEEcCCCCc
Q psy14542 256 WYKQDSPVEESDRI-----QRIG------SSLSISHVEESD-SGVWNCVANNSEGQD 300 (371)
Q Consensus 256 W~~~~~~~~~~~~~-----~~~~------~~l~i~~~~~~d-~G~Y~C~a~n~~g~~ 300 (371)
|+++|..+....+. ...+ +.|.|.....+| +|.|+|.|.|.....
T Consensus 158 W~~~g~~l~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~YtC~v~~~~~~~ 214 (240)
T 3q5y_A 158 WWVNGKEVHSGVSTDPQAYKESNYSYSLSSRLRVSATFWHNPRNHFRCQVQFHGLSE 214 (240)
T ss_dssp EEETTEEECTTEEECSSCEEEETTEEEEEEEEEEEHHHHSCTTCEEEEEEEECCBCT
T ss_pred EEECCEECcCcEecCCceeeCCCCCEEEEEEEEECHHHhccCCCEEEEEEEcCCCCC
Confidence 99999887654221 1112 348888888888 779999999876654
No 345
>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*
Probab=99.69 E-value=7.4e-16 Score=123.50 Aligned_cols=165 Identities=16% Similarity=0.250 Sum_probs=105.3
Q ss_pred CCCcEEEeccCcEEEEEEecCCC-CCCeeEEEeCC--E---EEe-----------------eC----------CeeEEEE
Q psy14542 17 PSGQVVVDVGHRIELHCRVSPKR-LSSAKAWLKDG--L---VLR-----------------RN----------SDEVLVL 63 (371)
Q Consensus 17 p~~~~~~~~G~~v~l~C~~~~~~-~~~~~~W~~~~--~---~~~-----------------~~----------~~~~l~i 63 (371)
|.. +.+.+|++++|.|.+.... ..+.+.|+|++ . .+. .. ...+|.|
T Consensus 7 p~~-~~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I 85 (220)
T 1pz5_B 7 SGG-GLVQPGGSMKLSCVASGFTFSNYWMEWVRQSPEKGLEWVAEIRLKSNNYATHYAESVKGRFTISRDDSKSSVYLQM 85 (220)
T ss_dssp ECC-EEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEECCGGGTTCEEECGGGTTTEEEEEEGGGTEEEEEE
T ss_pred cCC-EEEcCCCeEEEEEEEcCCccCCccEEEEEeCCCCCcEEEEEEEcCCCccccccCcccCCcEEEEEeCCCCeEEEEE
Confidence 444 7899999999999765321 25789999842 1 110 00 2348999
Q ss_pred ccCCcCCCeEEEEEEEcCCCCe-E--EEEEEEEec---ceeeEec-CCceeeecCCcEEEEEEecCC-CCCceEEEeeCC
Q psy14542 64 DRVQREDAGMYQCHVSADDDSA-Q--MSAQVILGG---ELVEIAS-SNQVVVDVGHRIELHCRVSPK-RLSSAKAWLKDG 135 (371)
Q Consensus 64 ~~~~~~d~G~Y~C~~~~~~~~~-~--~~~~l~v~~---~~~~~~~-~~~~~~~~g~~v~l~C~~~~~-~~~~~v~W~~~~ 135 (371)
.+++.+|+|.|.|.+.+..+.. . ....|.|.. .+|.+.. .+...+.+|+.++|.|.+.+. |.+..+.|++++
T Consensus 86 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~ 165 (220)
T 1pz5_B 86 NNLRAEDTGIYYCTRGGAVGAMDYWGQGTSVTVSSATTTAPSVYPLVPGCSDTSGSSVTLGCLVKGYFPEPVTVKWNYGA 165 (220)
T ss_dssp CSCCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEECCCSCCSCSSSEEEEEEEEEEBSSCCEEEEGGGT
T ss_pred ccCCHHHCEEEEEEEecCCcccceECCCEEEEEccCCCCCCeEEEcccccccCCCCcEEEEEEEEEEeCCCeEEEEecCC
Confidence 9999999999999999865322 1 335666652 2333332 222334689999999999987 652399999987
Q ss_pred EEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceee
Q psy14542 136 LVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASL 203 (371)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~ 203 (371)
...... ...... .. |.| .. .+.|.|.+... | .|.|+|.|.|. .+...
T Consensus 166 ~~~~~~-----~~~~~~-~~-~~~---------~~--~s~L~i~~~~~-~-~g~Y~C~a~n~-~~~~~ 212 (220)
T 1pz5_B 166 LSSGVR-----TVSSVL-QS-GFY---------SL--SSLVTVPSSTW-P-SQTVICNVAHP-ASKVD 212 (220)
T ss_dssp CCTTEE-----ECCCEE-ET-TEE---------EE--EEEEEECGGGT-T-TSCCEEEEEEG-GGTEE
T ss_pred cccceE-----EcCCcc-cC-CeE---------EE--EEEEEEcchhc-C-CceEEEEEEEC-CccEe
Confidence 631000 000000 01 222 21 26788887776 6 59999999998 55433
No 346
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}
Probab=99.69 E-value=7.4e-16 Score=123.03 Aligned_cols=174 Identities=14% Similarity=0.185 Sum_probs=120.0
Q ss_pred cceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC-----------CeeEEEEccCCcCCCeEEEEEE
Q psy14542 10 SLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN-----------SDEVLVLDRVQREDAGMYQCHV 78 (371)
Q Consensus 10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~-----------~~~~l~i~~~~~~d~G~Y~C~~ 78 (371)
+|.+ ..|.. +.+.+|+.+.|.|. ..+.|.+.+.|+|+|..+... ....|.|.+++.+|+|.|+|.+
T Consensus 19 ~P~~-~~p~~-~~~~~G~~v~l~C~-~~g~p~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a 95 (215)
T 3mtr_A 19 APKL-QGPVA-VYTWEGNQVNITCE-VFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTA 95 (215)
T ss_dssp EEEE-ECCSE-EEECTTCCEEEEEE-EEEESCCEEEEEETTEESSCSSSCSEEEEEETTEEEEEECCCSGGGCEEEEEEE
T ss_pred CCcc-cCCce-EEEECCCCEEEEEE-EeecCCCEEEEEECCeECCCCCCccEEEecCCCeeEEEEecCChhhCeEEEEEE
Confidence 4556 56666 89999999999995 456778899999999887654 3578999999999999999999
Q ss_pred EcCCCCeEEEEEEEEecceeeEecCCceeeecCCcEEEEEEecCC---CCCc--eEEEeeCCEEeeeCCeeEEEEcccCc
Q psy14542 79 SADDDSAQMSAQVILGGELVEIASSNQVVVDVGHRIELHCRVSPK---RLSS--AKAWLKDGLVLRRNSDEVLVLDRVQR 153 (371)
Q Consensus 79 ~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~---~~~~--~v~W~~~~~~~~~~~~~~~~~~~~~~ 153 (371)
.|..|.....+.|.|.. +|........ ...+..+.|.|..... .+.. .+.|.+++...-.. ... .
T Consensus 96 ~n~~g~~~~~~~l~v~~-~P~~p~~~~~-~~~~~~~~l~w~~p~~~~~~pi~~y~v~~~~~~~~~w~~----~~~-~--- 165 (215)
T 3mtr_A 96 VNRIGQESLEFILVQAD-TPSSPSIDQV-EPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHS----KWY-D--- 165 (215)
T ss_dssp ECSSCEEEEEEEEEECC-CCCCCEEEEE-EEETTEEEEEEECCSCCCSSCEEEEEEEEEETTCCCCEE----EEE-E---
T ss_pred EECCCceEEEEEEEECC-CCCCCcceEE-EEecceEEEEEecCCccCCCceEEEEEEEEECCCCcccc----ccc-c---
Confidence 99999888888888873 3322111111 1457788999985332 1212 47777765421100 000 0
Q ss_pred CCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeee
Q psy14542 154 EDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLT 214 (371)
Q Consensus 154 ~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~ 214 (371)
.........+.|.++...+ .|.|+|.|.|. .|....+. .+.+.
T Consensus 166 -------------~~~~~~~~~l~i~~L~~~~-~y~~~~~A~N~-~G~s~~S~---~~~v~ 208 (215)
T 3mtr_A 166 -------------AKEASMEGIVTIVGLKPET-TYAVRLAALNG-KGLGEISA---ASEFK 208 (215)
T ss_dssp -------------HHHHHHHTEEEEECCCTTC-EEEEEEEEEES-SCBCCCCC---CEEEE
T ss_pred -------------cccccccccEEECCCCCCC-EEEEEEEEEeC-CcccCccc---ceeeE
Confidence 0000011579999999999 99999999999 77666555 55554
No 347
>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Probab=99.69 E-value=7.5e-17 Score=111.38 Aligned_cols=90 Identities=18% Similarity=0.344 Sum_probs=76.3
Q ss_pred cccceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccCC--ceEEe----cceEEEeccCCCCCeEEEEEE
Q psy14542 220 LSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESD--RIQRI----GSSLSISHVEESDSGVWNCVA 293 (371)
Q Consensus 220 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~--~~~~~----~~~l~i~~~~~~d~G~Y~C~a 293 (371)
.||.+...+.... +.+|+.+.|.|.+.|.|.|.+.|+++|..+.... ++... ..+|.|.++..+|+|.|+|.|
T Consensus 4 ~PP~i~~~p~~~~-v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a 82 (100)
T 3knb_A 4 IPPKIEALPSDIS-IDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTLSL 82 (100)
T ss_dssp EEEEECCCCSEEE-EETTSEEEEEEEEEEESCCEEEEEETTEECCTTGGGTEEEEECSSEEEEEESSCCGGGCEEEEEEE
T ss_pred CCCEEEeCCCcEE-EeCCCeEEEEEEEEEecCCEEEEEECceEeeeeccceeeeecccceEEEEEcCCCccCCEEEEEEE
Confidence 5677777777776 9999999999999999999999999999886553 34321 247999999999999999999
Q ss_pred EcCCCCceeEEEEEEec
Q psy14542 294 NNSEGQDKMQLFIQYAH 310 (371)
Q Consensus 294 ~n~~g~~~~~~~l~v~~ 310 (371)
.|..|..+.++.|.|..
T Consensus 83 ~N~~G~~~~~~~l~V~~ 99 (100)
T 3knb_A 83 GNEFGSDSATVNIHIRS 99 (100)
T ss_dssp EETTEEEEEEEEEEEEC
T ss_pred EECCCEEEEEEEEEEEE
Confidence 99999999999998863
No 348
>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}
Probab=99.69 E-value=5e-16 Score=127.77 Aligned_cols=180 Identities=19% Similarity=0.263 Sum_probs=103.2
Q ss_pred eeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCcee----EeccceEEEEEe
Q psy14542 106 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYH----MLSSGELIIHQV 181 (371)
Q Consensus 106 ~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~----~~~~~~l~i~~~ 181 (371)
..+.+|++++|.|.+.+.+. +.+.|++.... ........... ......+.....+.+.. ......|.|.++
T Consensus 12 ~~v~~G~~v~L~C~~~~~~~-~~v~W~r~~~~--~~~~~~~~~~~--~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v 86 (259)
T 3omz_A 12 VIRQTGSSAEITCDLAEGST-GYIHWYLHQEG--KAPQRLLYYDS--YTSSVVLESGISPGKYDTYGSTRKNLRMILRNL 86 (259)
T ss_dssp EEEETTCCEEEECCC------CEEEEEEECTT--SCCEEEEEEET--TTCCEEECTTCCBTTEEEECC--CCCEEEESSC
T ss_pred eEecCCCcEEEEEEEccCCC-cEEEEEEECCC--CCcEEEEEEec--CcCccccCCCCCcceeEeecCCCCeEEEEECCC
Confidence 44589999999999988776 89999983210 00000111110 00000000000000111 112357999999
Q ss_pred ecCCccceeEEEeeccccc---eeeeeeccceeeeecchhcc------------ccceeeeeeeeeeeecCCeEEEEEEe
Q psy14542 182 DESDRYRSYQCRGVNKLTG---ASLLSVNRGRLSLTENKRLL------------SAAKMFEKHRILNVKKDESVILPCSA 246 (371)
Q Consensus 182 ~~~d~~g~y~C~~~~~~~~---~~~~~~~~~~l~v~~~~~~~------------~p~~~~~~~~~~~~~~g~~~~l~C~~ 246 (371)
+.+| +|.|.|.+.+. .+ ...... .|.|....... .+.+...+.... +.+|++++|.|.+
T Consensus 87 ~~~D-sG~Y~C~~~~~-~~~~~~~~~~~---~l~V~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~-v~~G~~v~L~C~~ 160 (259)
T 3omz_A 87 IEND-SGVYYCATWDQ-NYYKKLFGSGT---SLVVTDKQGSADDAKKDAAKKDGAQKVTQAQSSVS-MPVRKAVTLNCLY 160 (259)
T ss_dssp CGGG-CEEEEEEEECT-TSSCEEECCCE---EEEEEC------------------CEEECCCCCEE-EETTCCEEECCEE
T ss_pred Cccc-CEEEEEEEeeC-CccccEECCCC---EEEEecCCCCccccccccccccCCeeeEEeCCEEE-EcCCCCEEEEEEC
Confidence 9999 99999999986 43 222222 56666421111 234455555555 8999999999998
Q ss_pred ecC-CCCceEEEeCCc--ccc------------cCCceEEe------cceEEEeccCCCCCeEEEEEEEcC
Q psy14542 247 QGN-PLPTIKWYKQDS--PVE------------ESDRIQRI------GSSLSISHVEESDSGVWNCVANNS 296 (371)
Q Consensus 247 ~~~-p~~~v~W~~~~~--~~~------------~~~~~~~~------~~~l~i~~~~~~d~G~Y~C~a~n~ 296 (371)
.+. +.+.+.|++.+. .+. ...++... ...|.|.++..+|+|.|.|.+.+.
T Consensus 161 ~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~ 231 (259)
T 3omz_A 161 ETSWWSYYIFWYKRLPSKEMIFLIRQGSDEQNAKSGRYSVNFKKAAKSVALTISALQLEDSAKYFCALGES 231 (259)
T ss_dssp ECCCSSCEEEEEEECTTCCEEEEEEEETTSCCCEETTEEECCBGGGTBCCEEESSCCGGGCSEEEEEEESC
T ss_pred CCccCCceEEEeeeCCCCCcEEEEEECCcCCcccCCeEEEEEcCcCCEEEEEECCCChhHCEEEEEEEeCc
Confidence 874 778999998542 110 11333322 246999999999999999999854
No 349
>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D
Probab=99.69 E-value=7.9e-16 Score=125.52 Aligned_cols=180 Identities=14% Similarity=0.186 Sum_probs=106.7
Q ss_pred eeeecCCcEEEEEEecCCCCCceEEEeeC--CEEeeeCCeeEEEEcccCcCCCeeEEEEEe-CCceeEec----cceEEE
Q psy14542 106 VVVDVGHRIELHCRVSPKRLSSAKAWLKD--GLVLRRNSDEVLVLDRVQREDAGMYQCHIE-DGKYHMLS----SGELII 178 (371)
Q Consensus 106 ~~~~~g~~v~l~C~~~~~~~~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~-~~~~~~~~----~~~l~i 178 (371)
..+.+|++++|.| ..+.+. ..+.|+|. +.... ..+...+ ...+..... ++++.+.. +..|.|
T Consensus 12 v~v~~G~~v~L~C-~~~~~~-~~v~W~r~~~~~~~~----~~~~~~~-----~~~~~~~~~~~~r~~~~~~~~~~~sL~I 80 (245)
T 4ei6_B 12 QIIDMGQMVTLNC-DPVSNH-LYFYWYKQILGQQME----FLVNFYN-----GKVMEKSKLFKDQFSVERPDGSYFTLKI 80 (245)
T ss_dssp EEEETTCCEEEEE-ECCTTC-CEEEEEEEETTTEEE----EEEEEET-----TEEEEECTTCCTTEEEECCTTSCEEEEE
T ss_pred EEecCCCCEEEEE-EcCCCC-CEEEEEEECCCCCcE----EEEEECC-----CceeccCCCccCCEEEEeccCceEEEEE
Confidence 3458999999999 555555 79999982 11111 0000000 000000000 02333332 247999
Q ss_pred EEeecCCccceeEEEeeccc---cceeeeeeccceeeeecch-hccccceeee-eeeeeeeecCCeEEEEEEeec-CCCC
Q psy14542 179 HQVDESDRYRSYQCRGVNKL---TGASLLSVNRGRLSLTENK-RLLSAAKMFE-KHRILNVKKDESVILPCSAQG-NPLP 252 (371)
Q Consensus 179 ~~~~~~d~~g~y~C~~~~~~---~~~~~~~~~~~~l~v~~~~-~~~~p~~~~~-~~~~~~~~~g~~~~l~C~~~~-~p~~ 252 (371)
.+++.+| +|.|.|.+.+.. ........ .+.|.... ...+|.+... +.... +..|+.++|.|.+.+ .|.+
T Consensus 81 ~~v~~~D-~G~Y~C~~~~~~~~~~~~~~~~~---~l~V~~~~~~~~~p~~~~~~~~~~~-~~~g~~v~l~C~~~g~~p~~ 155 (245)
T 4ei6_B 81 QPTALED-SAVYFCASSFWGAYAEQFFGPGT---RLTVLEDLKNVFPPEVAVFEPSEAE-ISHTQKATLVCLATGFYPDH 155 (245)
T ss_dssp CSCCGGG-CEEEEEEEECSSTTCCCEECCCE---EEEEESCGGGCBCCEEEEECCCHHH-HHHHSEEEEEEEEEEEBSSC
T ss_pred CCCCHhH-CEEEEEEEccCCCcceEEEcCCc---EEEEecccCCCCCceEEEeCCCccc-ccCCCceEEEEEEeeEeCCC
Confidence 9999999 999999998531 11222222 55555311 1124444332 22223 566999999999988 4545
Q ss_pred -ceEEEeCCcccccCCce---------------EEecceEEEeccCCCC-CeEEEEEEEcCCCCce
Q psy14542 253 -TIKWYKQDSPVEESDRI---------------QRIGSSLSISHVEESD-SGVWNCVANNSEGQDK 301 (371)
Q Consensus 253 -~v~W~~~~~~~~~~~~~---------------~~~~~~l~i~~~~~~d-~G~Y~C~a~n~~g~~~ 301 (371)
.+.|+++|..+....+. ....+.|.|.....+| +|.|+|.|.|......
T Consensus 156 ~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~ytC~v~~~~l~~~ 221 (245)
T 4ei6_B 156 VELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLSEN 221 (245)
T ss_dssp EEEEEEETTEEECTTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHHSCTTCEEEEEEEECCBCTT
T ss_pred eEEEEEECCEECCCCcccccccccccccCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEECCCCCc
Confidence 89999999877653221 1112348888888888 9999999998765543
No 350
>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}
Probab=99.68 E-value=1.5e-15 Score=126.21 Aligned_cols=192 Identities=13% Similarity=0.159 Sum_probs=112.8
Q ss_pred CceeeecCCcEEEEEEecCCC-CCceEEEeeCCEEeeeCCeeEEEEc-c-----cCcCCCeeEEEEEeCCceeEecc---
Q psy14542 104 NQVVVDVGHRIELHCRVSPKR-LSSAKAWLKDGLVLRRNSDEVLVLD-R-----VQREDAGMYQCHIEDGKYHMLSS--- 173 (371)
Q Consensus 104 ~~~~~~~g~~v~l~C~~~~~~-~~~~v~W~~~~~~~~~~~~~~~~~~-~-----~~~~~~g~y~~~~~~~~~~~~~~--- 173 (371)
....+.+|++++|.|.+.+.. ....+.|++..... .....+... . ..... .+++.+..+
T Consensus 8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~--~~~~~~~~~~~~~~~~~~~~~---------~~R~~~~~~~~~ 76 (280)
T 3fku_X 8 GAEVKKPGSSVKVSCTSSEVTFSSFAISWVRQAPGQ--GLEWLGGISPMFGTPNYAQKF---------QGRVTITADQST 76 (280)
T ss_dssp CCCEECTTCCEEEEEEECCSCCTTSCEEECCBCSSS--CCCCCEEECTTTCCEEECGGG---------TTTCEEEEETTT
T ss_pred CCEEECCCCcEEEEEEeeccCCCCeEEEEEEeCCCC--CCEEEEEEeccCCccccCccc---------CCcEEEEEeCCC
Confidence 344558999999999997742 23789999843110 001111111 0 00001 123333322
Q ss_pred --ceEEEEEeecCCccceeEEEeeccc--------cceeeeeeccceeeeec-ch---------hccccceeeeeeeeee
Q psy14542 174 --GELIIHQVDESDRYRSYQCRGVNKL--------TGASLLSVNRGRLSLTE-NK---------RLLSAAKMFEKHRILN 233 (371)
Q Consensus 174 --~~l~i~~~~~~d~~g~y~C~~~~~~--------~~~~~~~~~~~~l~v~~-~~---------~~~~p~~~~~~~~~~~ 233 (371)
..|.|.+++.+| +|.|.|.+.+.. ........ .|.|.. .. ...++.+...+. ..
T Consensus 77 ~~~sL~I~~v~~~D-sG~Y~C~~~~~~~~~g~~~~~~~~~~~~---~L~V~~~~~~~~~~~~~~~~~~~~v~~~p~-~~- 150 (280)
T 3fku_X 77 RTAYMDLRSLRSED-TAVYYCARSPSYICSGGTCVFDHWGQGT---LVTVSSGGGGSGGGGSGGGGIQPGLTQPPS-VS- 150 (280)
T ss_dssp TEEEEEECSCCSTT-CEECCEEECSSSSSSSTTCCCCEECCCC---EEEECC--------------CCCSBBCCSE-EE-
T ss_pred CEEEEEECCCChhh-CEEEEEEEecCCccccccccccEECCCE---EEEEcCCCCccCCCCCCceEeeeEEEeCCc-EE-
Confidence 479999999999 999999998751 11122222 566653 00 002444444444 45
Q ss_pred eecCCeEEEEEEeec-CC-CCceEEEeC--Ccccc------------cCCceEEe----cceEEEeccCCCCCeEEEEEE
Q psy14542 234 VKKDESVILPCSAQG-NP-LPTIKWYKQ--DSPVE------------ESDRIQRI----GSSLSISHVEESDSGVWNCVA 293 (371)
Q Consensus 234 ~~~g~~~~l~C~~~~-~p-~~~v~W~~~--~~~~~------------~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~a 293 (371)
+.+|++++|.|.+.+ .+ .+.+.|++. +..+. ...++... ...|.|.++..+|+|.|.|.+
T Consensus 151 v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~ 230 (280)
T 3fku_X 151 KGLRQTATLTCTGNSNNVGNQGAAWLQQHQGHPPKLLSYRNNDRPSGISERFSASRSGNTASLTITGLQPEDEADYYCST 230 (280)
T ss_dssp ECTTCCEEEEEECCCCCCCTTCCEEEEECSSSCCEESCCTTCCCCSSSCTTEEEEEETTEEEEEECSCCGGGCSEEEEEE
T ss_pred EecCCCEEEEEEecCCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCCEEEEccCCEEEEEECCCCHHHCEEEEEEE
Confidence 999999999999987 43 378999973 22221 12333321 125999999999999999999
Q ss_pred EcCCCC---ceeEEEEEEecCc
Q psy14542 294 NNSEGQ---DKMQLFIQYAHGK 312 (371)
Q Consensus 294 ~n~~g~---~~~~~~l~v~~~p 312 (371)
.|..+. ......|.|...+
T Consensus 231 ~~~~~~~~~~g~~t~l~V~~~~ 252 (280)
T 3fku_X 231 WDSSLSAVVFGGGTKLTVLGQP 252 (280)
T ss_dssp EETTTTEEEEBCCCEEEEC---
T ss_pred ecCCCCceEECCCEEEEECCCC
Confidence 987632 1223456665433
No 351
>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}
Probab=99.68 E-value=1.1e-15 Score=126.47 Aligned_cols=173 Identities=16% Similarity=0.262 Sum_probs=103.7
Q ss_pred eeeecCCcEEEEEEecCCCC----CceEEEeeCCEEeeeCCeeEEEEcc--cCcCCCeeEEEEEeCCceeEe---ccceE
Q psy14542 106 VVVDVGHRIELHCRVSPKRL----SSAKAWLKDGLVLRRNSDEVLVLDR--VQREDAGMYQCHIEDGKYHML---SSGEL 176 (371)
Q Consensus 106 ~~~~~g~~v~l~C~~~~~~~----~~~v~W~~~~~~~~~~~~~~~~~~~--~~~~~~g~y~~~~~~~~~~~~---~~~~l 176 (371)
..+.+|++++|.|.+.+.+. ...+.|++..... .... +.... ......+ ++.+. ....|
T Consensus 25 ~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~--~~~~-l~~~~~~~~~~~~~---------r~~~~~~~~~~~L 92 (268)
T 1x9q_A 25 LPVSLGDQASISCRSSQSLVHSNGNTYLRWYLQKPGQ--SPKV-LIYKVSNRVSGVPD---------RFSGSGSGTDFTL 92 (268)
T ss_dssp ECCCTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTS--CCEE-EEETTTEECTTSCT---------TEEEEEETTEEEE
T ss_pred EEecCCCCEEEEeEecCCcccccCCceEEEEEECCCC--CCEE-EEEecCCCCCCCcc---------cEEEEcCCCEEEE
Confidence 34489999999999987762 3789999853100 0000 11000 0000112 33222 12479
Q ss_pred EEEEeecCCccceeEEEeeccccce-eeeeeccceeeeecchhcc----cc--------------ceeeeeeeeeeeecC
Q psy14542 177 IIHQVDESDRYRSYQCRGVNKLTGA-SLLSVNRGRLSLTENKRLL----SA--------------AKMFEKHRILNVKKD 237 (371)
Q Consensus 177 ~i~~~~~~d~~g~y~C~~~~~~~~~-~~~~~~~~~l~v~~~~~~~----~p--------------~~~~~~~~~~~~~~g 237 (371)
.|.+++.+| +|.|.|.+.+. .+. ..... .|.|....... +| .....+.... +.+|
T Consensus 93 ~I~~v~~~D-sG~Y~C~~~~~-~~~~~~~~~---~L~V~~~~~~~~p~~pp~~~~~~~~~~~~~~v~~~~~~~~~-v~~G 166 (268)
T 1x9q_A 93 KINRVEAED-LGVYFCSQSTH-VPWTFGGGT---KLEIKSSADDAKKDAAKKDDAKKDDAKKDGGVKLDETGGGL-VQPG 166 (268)
T ss_dssp EESSCCGGG-CEEEEEEECSS-SSCEECCCE---EEC------------------------CGGGCEEEEECCEE-ECTT
T ss_pred EECCCChhH-CEEEEEEEecC-CCceEcCCE---EEEEccCccCCCccccccccccccccccccceEEECCCceE-ecCC
Confidence 999999999 99999999886 332 22222 55555322101 11 1122233444 8999
Q ss_pred CeEEEEEEeecCCC--CceEEEeCC--ccc-------------------ccCCceEEe------cceEEEeccCCCCCeE
Q psy14542 238 ESVILPCSAQGNPL--PTIKWYKQD--SPV-------------------EESDRIQRI------GSSLSISHVEESDSGV 288 (371)
Q Consensus 238 ~~~~l~C~~~~~p~--~~v~W~~~~--~~~-------------------~~~~~~~~~------~~~l~i~~~~~~d~G~ 288 (371)
+.++|.|.+.+.+. +.+.|+++. ..+ ....++... ..+|.|.++..+|+|.
T Consensus 167 ~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~ 246 (268)
T 1x9q_A 167 GAMKLSCVTSGFTFGHYWMNWVRQSPEKGLEWVAQFRNKPYNYETYYSDSVKGRFTISRDDSKSSVYLQMNNLRVEDTGI 246 (268)
T ss_dssp CCEEEEEEEESSCGGGCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGGCEE
T ss_pred CcEEEEEEecCccccccEEEEEEeCCCCCcEEEEEEcccccccccccCCccCCeEEEEEeCCCCEEEEEECCCCHHHCEE
Confidence 99999999998764 789999853 221 112344422 2479999999999999
Q ss_pred EEEEEEcC
Q psy14542 289 WNCVANNS 296 (371)
Q Consensus 289 Y~C~a~n~ 296 (371)
|.|.+.+.
T Consensus 247 Y~C~a~~~ 254 (268)
T 1x9q_A 247 YYCTGASY 254 (268)
T ss_dssp EEEEEEET
T ss_pred EEEEEccC
Confidence 99999874
No 352
>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens}
Probab=99.68 E-value=4.2e-16 Score=129.64 Aligned_cols=175 Identities=13% Similarity=0.202 Sum_probs=111.5
Q ss_pred cceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCC--E---EEe---------------e---------CCeeE
Q psy14542 10 SLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDG--L---VLR---------------R---------NSDEV 60 (371)
Q Consensus 10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~--~---~~~---------------~---------~~~~~ 60 (371)
.+.+...|.. +.+.+|++++|.|.+ .+.+.+.+.|+|++ . .+. . ....+
T Consensus 24 ~~~v~~~p~~-v~v~~G~~v~L~C~~-~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~s 101 (279)
T 2wbj_D 24 GAVVSQHPSW-VISKSGTSVKIECRS-LDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLST 101 (279)
T ss_dssp CCCEEEECSE-EEEETTSCEEEEEEE-SSSCEEEEEEEEECSSSCCEEEEEEESSSCCCCCSSSCSSSEEEEECSSSEEE
T ss_pred cceEEeCCCe-EEecCCCeEEEEEEe-CCCCCCeEEEEEeCCCCCeEEEEEEecCCcceecCCccCCcEEEEeCCCCEEE
Confidence 4667777777 899999999999966 45567889999853 1 110 0 03458
Q ss_pred EEEccCCcCCCeEEEEEEEcCCC----Ce--EEEEEEEEec-----ceeeEecCC-c-eeeecCCcEEEEEEecCCCC-C
Q psy14542 61 LVLDRVQREDAGMYQCHVSADDD----SA--QMSAQVILGG-----ELVEIASSN-Q-VVVDVGHRIELHCRVSPKRL-S 126 (371)
Q Consensus 61 l~i~~~~~~d~G~Y~C~~~~~~~----~~--~~~~~l~v~~-----~~~~~~~~~-~-~~~~~g~~v~l~C~~~~~~~-~ 126 (371)
|.|.+++.+|+|.|.|.+.+..+ .. .....|.|.. .+|.+.... . ..+..|+.++|.|.+.+.++ .
T Consensus 102 L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P~~ 181 (279)
T 2wbj_D 102 LTVTSAHPEDSSFYICSARDLTSGANNEQFFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDH 181 (279)
T ss_dssp EEESSCCGGGCEEEEEEEEETTCBTSCCEEECCCEEEEEESCGGGCBCCEEEEEECCHHHHHHHSCCEEEEEEEEEBSSC
T ss_pred EEEccCCccCCEEEEEEEcccccCCccceeeCCCEEEEEecCCCCCCCCEEEEECCCcccccCCCceEEEEEEeeEcCCC
Confidence 99999999999999999998421 11 1234566653 234333221 1 12246899999999988644 3
Q ss_pred ceEEEeeCCEEeeeCCeeE-EEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeecc
Q psy14542 127 SAKAWLKDGLVLRRNSDEV-LVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNK 197 (371)
Q Consensus 127 ~~v~W~~~~~~~~~~~~~~-~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~ 197 (371)
+.++|++++..+....... ...........|.|. .. +.|.|......|+.|.|+|.+.|.
T Consensus 182 ~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~---------~~--s~L~i~~~~~~d~~~~YtC~v~n~ 242 (279)
T 2wbj_D 182 VELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYS---------LS--SRLRVSATFWQNPRNHFRCQVQFY 242 (279)
T ss_dssp EEEEEEETTEECCTTEEECSSCEESSTTSTTCCEE---------EE--EEEECCSTTTTCTTCEEEEEEEEC
T ss_pred cEEEEEECCEECCCCcccccccccccccCCCCcEE---------EE--EEEEEChHHhccCCCEEEEEEEeC
Confidence 6999999998876432100 000001112333332 21 467777766654267899999987
No 353
>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}
Probab=99.68 E-value=3.2e-15 Score=125.03 Aligned_cols=169 Identities=17% Similarity=0.299 Sum_probs=106.5
Q ss_pred eCCCcEEEeccCcEEEEEEecCCCC--CCeeEEEeCC-----EEEe---------------eC----------CeeEEEE
Q psy14542 16 SPSGQVVVDVGHRIELHCRVSPKRL--SSAKAWLKDG-----LVLR---------------RN----------SDEVLVL 63 (371)
Q Consensus 16 ~p~~~~~~~~G~~v~l~C~~~~~~~--~~~~~W~~~~-----~~~~---------------~~----------~~~~l~i 63 (371)
.|.. +.+.+|++++|.|.+. +.+ .+.+.|+|+. ..+. .. ...+|.|
T Consensus 28 ~p~~-~~v~~G~~v~L~C~~~-~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I 105 (291)
T 2gki_A 28 QSGP-ELVKPGASVKMSCKAS-GYTFTSYVMHWVKQKPGQGLEWIGYINPYNDGTKYNEKFKGKATLTSDKSSSTAYMEL 105 (291)
T ss_dssp ECCC-EEECTTCCEEEEEEEE-SSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGBTTBCEEEEGGGTEEEEEE
T ss_pred cCCc-EEecCCCCEEEEEecc-CCcccccEEEEEEECCCCCcEEEEEEecCCCccccCcccCCCEEEEEeCCCCEEEEEE
Confidence 4555 8999999999999754 333 4679999842 1110 00 2468999
Q ss_pred ccCCcCCCeEEEEEEEcCC-CCeE----EEEEEEEecc---------------eeeEecCCc-eeeecCCcEEEEEEecC
Q psy14542 64 DRVQREDAGMYQCHVSADD-DSAQ----MSAQVILGGE---------------LVEIASSNQ-VVVDVGHRIELHCRVSP 122 (371)
Q Consensus 64 ~~~~~~d~G~Y~C~~~~~~-~~~~----~~~~l~v~~~---------------~~~~~~~~~-~~~~~g~~v~l~C~~~~ 122 (371)
.+++.+|+|.|.|.+.+.. +... ....|.|... ++.+...+. ..+.+|++++|.|.+.+
T Consensus 106 ~~v~~~DsG~Y~C~~~~~~~g~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~ 185 (291)
T 2gki_A 106 SSLTSEDSAVYYCARGAYKRGYAMDYWGQGTSVTVSSRGGGGSGGGGSGGGGSDLVMSQSPSSLAVSAGEKVTMSCKSSQ 185 (291)
T ss_dssp CSCCGGGCEEEEEEEECGGGTTCEEEECCCEEEEECC----------------CCCEECSCSEEEEETTSCEEEEEEESS
T ss_pred CcCCHHHCEEEEEEEeccccccccceeCCCcEEEEecCCccccccccCCCCCccceEEcCCCEEEEcCCCcEEEEEEcCC
Confidence 9999999999999999764 2111 2346777631 233444443 34589999999999988
Q ss_pred CCCC-----ceEEEeeCC--EEeeeCCeeEEEEccc-CcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEe
Q psy14542 123 KRLS-----SAKAWLKDG--LVLRRNSDEVLVLDRV-QREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRG 194 (371)
Q Consensus 123 ~~~~-----~~v~W~~~~--~~~~~~~~~~~~~~~~-~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~ 194 (371)
.+.+ +.+.|+|+. ..+. ........ .....+.|..... .....|.|.+++.+| +|.|+|.+
T Consensus 186 ~~~~~~~~~~~v~W~k~~~g~~~~----~l~~~~~~~~~~~~~r~~~~~~------~~~~~L~I~~v~~~D-sG~Y~C~a 254 (291)
T 2gki_A 186 SLFNSRTRKNYLAWYQQKPGQSPK----LLIYWASTRESGVPDRFTGSGS------GTDFTLTISSVQAED-LAVYYCKQ 254 (291)
T ss_dssp CCEETTTTEECEEEEEECTTSCCE----EEEETTTEECTTCCTTEEEEEE------TTEEEEEESSCCGGG-CEEEEEEE
T ss_pred ccccccccceeEEEEEECCCCCcE----EEEEEcccCCCCcCCCEEEEec------CCEEEEEECCCCHHH-CEEEEEEE
Confidence 7762 289999963 2110 00000000 0000111211100 112479999999999 99999999
Q ss_pred ecc
Q psy14542 195 VNK 197 (371)
Q Consensus 195 ~~~ 197 (371)
.+.
T Consensus 255 ~~~ 257 (291)
T 2gki_A 255 SYY 257 (291)
T ss_dssp EET
T ss_pred ccC
Confidence 875
No 354
>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus}
Probab=99.67 E-value=1.5e-16 Score=128.31 Aligned_cols=168 Identities=17% Similarity=0.180 Sum_probs=106.8
Q ss_pred eecCCcEEEEEEecCC-CC-CceEEEeeCCEEe-eeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecC
Q psy14542 108 VDVGHRIELHCRVSPK-RL-SSAKAWLKDGLVL-RRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDES 184 (371)
Q Consensus 108 ~~~g~~v~l~C~~~~~-~~-~~~v~W~~~~~~~-~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~ 184 (371)
+..|+.++|.|.+.+. |. +..++|+++|..+ ..... ... ....| .+. ..+.|.|.++..+
T Consensus 25 v~~G~~v~L~C~~~g~~P~~p~~v~W~~~g~~~~~~~~~-~~~-----~~~~g---------~~~--~~s~L~I~~~~~~ 87 (231)
T 2w59_A 25 LYISLDAKLRCLVVNLPSDSSLSVTWTREKSGNLRPDPM-VLQ-----EHFNG---------TYS--ASSAVPVSTQDWL 87 (231)
T ss_dssp HHTSCCCEEEEEEEEESCCTTCEEEEECSSSSCCCCCCC-EEE-----ECTTS---------CEE--EEEEEECCHHHHH
T ss_pred cccCCceEEEEEEeCccCCCCeEEEEEcCCeeccccccc-cce-----ECCCC---------cEE--EEEEEEecchhcc
Confidence 3689999999999885 42 2599999988766 22111 000 11222 222 2367999999999
Q ss_pred CccceeEEEeeccccceeeeeeccceeeeecch-hccccceeeeeeeeeeeecCCeEEEEEEeecC-C-CCceEEEeCCc
Q psy14542 185 DRYRSYQCRGVNKLTGASLLSVNRGRLSLTENK-RLLSAAKMFEKHRILNVKKDESVILPCSAQGN-P-LPTIKWYKQDS 261 (371)
Q Consensus 185 d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~-~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-p-~~~v~W~~~~~ 261 (371)
| .|.|+|.+.+. .+... . .+.|.... ...+|.+........ ...++.++|.|.+.|. | .+.|.|+++|.
T Consensus 88 D-~g~Y~C~~~~~-~~~~~--~---~~~v~~~~~~~~~P~v~v~~~~~~-~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~ 159 (231)
T 2w59_A 88 S-GERFTCTVQHE-ELPLP--L---SKSVYRNTGPTTPPLIYPFAPHPE-ELSLSRVTLSCLVRGFRPRDIEIRWLRDHR 159 (231)
T ss_dssp T-TCCEEEEEECT-TCSSC--E---EEEECCCCSCCBCCEEEEECCCGG-GGGSSEEEEEEEEEEEBSSCCEEEEEETTE
T ss_pred C-CCEEEEEEEcC-CCCCc--e---EEEEecCCCCCcCCEEEEeCCCHH-HhccCceEEEEEEEeccCCCcEEEEEECCE
Confidence 9 99999999987 43221 1 33332110 113454443322212 2235679999999985 4 36899999998
Q ss_pred ccccCCce----EE---------ec-------ceEEEeccCCCCCeEEEEEEEcCCCCc
Q psy14542 262 PVEESDRI----QR---------IG-------SSLSISHVEESDSGVWNCVANNSEGQD 300 (371)
Q Consensus 262 ~~~~~~~~----~~---------~~-------~~l~i~~~~~~d~G~Y~C~a~n~~g~~ 300 (371)
.+...... .. .+ +.|.|.....+|.|.|+|+|.|.....
T Consensus 160 ~l~~~~~~~~~~~~~~~~~~~~~~d~gt~~~~s~L~i~~~~~~~~g~YtC~v~n~~l~~ 218 (231)
T 2w59_A 160 AVPATEFVTTAVLPEERTANGAGGDGDTFFVYSKMSVETAKWNGGTVFACMAVHEALPM 218 (231)
T ss_dssp ECCGGGCEECCCEECCTTSCC---CCCCEEEEEEEEEEHHHHHTTCCEEEEEECTTSTT
T ss_pred ECCCcccccCccccCcccccccCCCCCeEEEEEEEEEeHHHcCCCCcEEEEEEcCCCCC
Confidence 87654311 11 12 357788888889999999999987653
No 355
>3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E
Probab=99.67 E-value=5e-16 Score=127.03 Aligned_cols=191 Identities=14% Similarity=0.180 Sum_probs=97.5
Q ss_pred CceeeecCCcEEEEEEecCCC-CCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEec-----cceEE
Q psy14542 104 NQVVVDVGHRIELHCRVSPKR-LSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLS-----SGELI 177 (371)
Q Consensus 104 ~~~~~~~g~~v~l~C~~~~~~-~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~-----~~~l~ 177 (371)
+...+.+|++++|.|.+.+.+ ....+.|++.... ......+.+.... ....| .....+++.+.. +..|.
T Consensus 8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g--~~~~~l~~~~~~~--~~~~~-~~~~~~R~~~~~~~~~~~~sL~ 82 (257)
T 3bn9_D 8 GGGLVKPGGSLRLSCAASGFTFSSYAMSWVRQAPG--KGLEWVSAISGSG--GSTYY-ADSVKGRFTISRDNSKNTLYLQ 82 (257)
T ss_dssp CCEEECTTCEEEEEEEEESSCGGGCCEEEEEECTT--SCEEEEEEECSSS--CCEEE-CGGGTTTEEEEEETTTTEEEEE
T ss_pred CCEEEcCCCcEEEEEEeccccCCCceEEEEEECCC--CCeEEEEEEecCC--Cceec-CcccCCceEEEecCCCCEEEEE
Confidence 344568999999999998764 1378999985310 0001111111000 00000 000022333332 25799
Q ss_pred EEEeecCCccceeEEEeeccccc----------eeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEee
Q psy14542 178 IHQVDESDRYRSYQCRGVNKLTG----------ASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQ 247 (371)
Q Consensus 178 i~~~~~~d~~g~y~C~~~~~~~~----------~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~ 247 (371)
|.+++.+| +|.|.|.+.+. .+ ..........|.|.... ..+|.+........ +..|+.++|.|.+.
T Consensus 83 I~~v~~~D-sG~Y~C~~~~~-~g~~~~~~~~~~~~~~~~~~t~L~V~~~~-~~~P~v~~~~p~~~-~~~g~~v~L~C~~~ 158 (257)
T 3bn9_D 83 MSSLRAED-TAVYYCARPYL-TYPQRRGPQNVSPFDNWGQGTMVTVSSAS-TKGPSVFPLAPSSK-STSGGTAALGCLVK 158 (257)
T ss_dssp EESCCGGG-CEEEEEEEECC-SSTTSCCCCTTCCEEEECCCEEEEECSSC-CBCCEECCCCC------------CCCEEE
T ss_pred ECCCChhh-CEEEEEEEecC-CCcccccccccceeeeeCCcEEEEecCCC-CcCCcEEEecCccc-ccCCCcEEEEEEEe
Confidence 99999999 99999999886 32 10011111256665311 13455443322223 66799999999999
Q ss_pred cC-CCC-ceEEEeCCcccccC--Cce------EEecceEEEeccCCCCCeEEEEEEEcCCCCceeEE
Q psy14542 248 GN-PLP-TIKWYKQDSPVEES--DRI------QRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQL 304 (371)
Q Consensus 248 ~~-p~~-~v~W~~~~~~~~~~--~~~------~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~ 304 (371)
+. |.+ .+.|++++..+... ... ....+.|.|..+..+| |.|+|.|.|.........
T Consensus 159 g~~P~pi~v~W~k~g~~~~~~~~~~~~~~~g~y~~~s~L~I~~~~~~~-g~YtC~v~n~~~~~~~~~ 224 (257)
T 3bn9_D 159 DYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDK 224 (257)
T ss_dssp EEBSSCCEEEETTTTCCSSCEECCCEECTTSCEEEEEECCCC--------CEEEEEEEGGGTEEEEE
T ss_pred eEECCCcEEEEeeCCCcCCcEecCCeEcCCCCEEEEEEEEEcccccCC-CeEEEEEEecCCCcCEEE
Confidence 85 776 89999998764211 111 1122457777777778 999999999766544333
No 356
>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens}
Probab=99.67 E-value=2.4e-15 Score=123.22 Aligned_cols=184 Identities=15% Similarity=0.250 Sum_probs=107.8
Q ss_pred eeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCC-ceeEeccce--EEEEEee
Q psy14542 106 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDG-KYHMLSSGE--LIIHQVD 182 (371)
Q Consensus 106 ~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~-~~~~~~~~~--l~i~~~~ 182 (371)
..+.+|++++|.|.+.+.+. ..+.|+|... .......+..... .........+ ++.+..+.. |.|.+++
T Consensus 11 v~v~~G~~v~L~C~~~~~~~-~~v~W~r~~~--~~~~~~~~~~~~~-----~~~~~~~~~~~R~~~~~~~~~~L~I~~v~ 82 (253)
T 3to4_D 11 RLVPRGQAVNLRCILKNSQY-PWMSWYQQDL--QKQLQWLFTLRSP-----GDKEVKSLPGADYLATRVTDTELRLQVAN 82 (253)
T ss_dssp EEEESSCCEEEEEECSCTTC-CCEEEEEEET--TCCEEEEEEECST-----TCEEEEEETTEEEEEECCSSSCCEEEEES
T ss_pred EEEeCCCcEEEEEEeCCCCc-ceEEEEEECC--CCCcEEEEEECCC-----cceecCCccCCcEEEEeCCCCeEEEccCC
Confidence 34589999999999887766 8999998221 0000111111110 1111111122 444433222 9999999
Q ss_pred cCCccceeEEEeeccccc---eeeeeeccceeeeecch-hccccceeeeeeeeeeeecCCeEEEEEEeec-CCCC-ceEE
Q psy14542 183 ESDRYRSYQCRGVNKLTG---ASLLSVNRGRLSLTENK-RLLSAAKMFEKHRILNVKKDESVILPCSAQG-NPLP-TIKW 256 (371)
Q Consensus 183 ~~d~~g~y~C~~~~~~~~---~~~~~~~~~~l~v~~~~-~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~~-~v~W 256 (371)
.+| +|.|.|.+.+. .+ ..........+.|.... ...+|.+.........+..|+.++|.|.+.+ .|.+ .+.|
T Consensus 83 ~~D-sG~Y~C~~~~~-~~~~~~~~~~~~~t~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~i~v~W 160 (253)
T 3to4_D 83 MSQ-GRTLYCTSSAD-HWTNTGQLYFGEGSKLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSW 160 (253)
T ss_dssp CSS-CEEEEEEEECS-CCSTTCCEEECCCEEEEEESCSTTCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEEEE
T ss_pred hhh-CeEEEEEEecC-CCCcccceEECCCEEEEEecCCCCCCCCeEEEeCCChhhcccCCceEEEEEEceEECCcEEEEE
Confidence 999 99999999865 22 11111111145554211 1134544433222111345789999999998 6666 8999
Q ss_pred EeCCcccccCCce---------------EEecceEEEeccCCCC-CeEEEEEEEcCCCC
Q psy14542 257 YKQDSPVEESDRI---------------QRIGSSLSISHVEESD-SGVWNCVANNSEGQ 299 (371)
Q Consensus 257 ~~~~~~~~~~~~~---------------~~~~~~l~i~~~~~~d-~G~Y~C~a~n~~g~ 299 (371)
+++|..+...... ....+.|.|.....+| .|.|+|.|.|....
T Consensus 161 ~k~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~~~ytC~v~h~~l~ 219 (253)
T 3to4_D 161 WVNGKEVHSGVSTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLS 219 (253)
T ss_dssp EETTEEECTTEEECSSCEESSTTCTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBC
T ss_pred EECCEECCCceecccccccccccCCCCCEEEEEEEEECHHHhccCCCEEEEEEEeCCCC
Confidence 9999877543211 1122467888887777 78999999987544
No 357
>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Probab=99.67 E-value=1.3e-15 Score=123.82 Aligned_cols=191 Identities=17% Similarity=0.210 Sum_probs=110.4
Q ss_pred eeeecCCcEEEEEEecCC--CCCceEEEeeCC--EEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEe-----ccceE
Q psy14542 106 VVVDVGHRIELHCRVSPK--RLSSAKAWLKDG--LVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHML-----SSGEL 176 (371)
Q Consensus 106 ~~~~~g~~v~l~C~~~~~--~~~~~v~W~~~~--~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~-----~~~~l 176 (371)
..+.+|++++|.|.+.+. +. ..+.|+|.. ..+ ...+...... ...|.....++++.+. .+..|
T Consensus 11 v~~~~G~~v~L~C~~~~~~~~~-~~v~W~r~~~~~~~----~~~~~~~~~~---~~~~~~~~~~~R~~~~~~~~~~~~~L 82 (242)
T 1hxm_B 11 STKTLSKTARLECVVSGITISA-TSVYWYRERPGEVI----QFLVSISYDG---TVRKESGIPSGKFEVDRIPETSTSTL 82 (242)
T ss_dssp EEEETTCCEEEEEEEESSCTTT-SCEEEEEECTTSCC----EEEEEECSSS---CEEECTTCCTTSEEEEEETTTTEEEE
T ss_pred EEecCCCcEEEEEEeCCccccC-ceEEEEEeCCCCCc----EEEEEEecCC---ceecCCcccCCeEEEEecCCCcEEEE
Confidence 345899999999999875 33 789999843 111 1111111100 0000000012343333 23579
Q ss_pred EEEEeecCCccceeEEEeeccccce---eeeeeccceeeeecchhc--cccceeee-eeeeeeeecCCeEEEEEEeecC-
Q psy14542 177 IIHQVDESDRYRSYQCRGVNKLTGA---SLLSVNRGRLSLTENKRL--LSAAKMFE-KHRILNVKKDESVILPCSAQGN- 249 (371)
Q Consensus 177 ~i~~~~~~d~~g~y~C~~~~~~~~~---~~~~~~~~~l~v~~~~~~--~~p~~~~~-~~~~~~~~~g~~~~l~C~~~~~- 249 (371)
.|.+++.+| +|.|.|.+.+...+. .........|.|...... .+|..... +.... +..|+.++|.|.+.+.
T Consensus 83 ~I~~v~~~D-~G~Y~C~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~p~~~v~~p~~~~-~~~g~~v~L~C~~~g~~ 160 (242)
T 1hxm_B 83 TIHNVEKQD-IATYYCALWEAQQELGKKIKVFGPGTKLIITDKQLDADVSPKPTIFLPSIAE-TKLQKAGTYLCLLEKFF 160 (242)
T ss_dssp EECSCCGGG-CEEEEEEEEEECSSTTCEEEEECCCEEEEEESSCCCSCCSCBCCCCCCCGGG-GGSSSCEEEEEEEEEES
T ss_pred EECCCCccc-CEEEEEeeecCCccccccceeEcCcEEEEEcccccCCCcCCCceEECCChhh-cccCCCceEEEEEeeEE
Confidence 999999999 999999998761111 111111226666632110 02222221 22223 5679999999999885
Q ss_pred CC-CceEEEeCCc-ccccCC--ceE------EecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEE
Q psy14542 250 PL-PTIKWYKQDS-PVEESD--RIQ------RIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQY 308 (371)
Q Consensus 250 p~-~~v~W~~~~~-~~~~~~--~~~------~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 308 (371)
|. +.+.|++++. .+.... ... ...+.|.|..... | |.|+|.|.|..+.......+.+
T Consensus 161 P~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~-g~y~C~v~n~~~~~~~~~~~~~ 227 (242)
T 1hxm_B 161 PDVIKIHWEEKKSNTILGSQEGNTMKTNDTYMKFSWLTVPEKSL-D-KEHRCIVRHENNKNGVDQEIIF 227 (242)
T ss_dssp SCCEEEEEEESSSCCCCCCEECCCEECSSSEEEEEEEEECTGGG-G-SCEEEEEEETTSGGGSCEEEEE
T ss_pred CCCeEEEEEcCCCEeecCccccceecCCCcEEEEEEEEEccccC-C-CEEEEEEEeCCCCCCceeEeec
Confidence 64 6899999987 553221 111 1224688877665 4 9999999999988765555555
No 358
>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H
Probab=99.67 E-value=4.6e-15 Score=119.75 Aligned_cols=167 Identities=13% Similarity=0.193 Sum_probs=102.5
Q ss_pred EEEeccCcEEEEEEecCCC-CCCeeEEEeCC-----EEEe--------------eC----------CeeEEEEccCCcCC
Q psy14542 21 VVVDVGHRIELHCRVSPKR-LSSAKAWLKDG-----LVLR--------------RN----------SDEVLVLDRVQRED 70 (371)
Q Consensus 21 ~~~~~G~~v~l~C~~~~~~-~~~~~~W~~~~-----~~~~--------------~~----------~~~~l~i~~~~~~d 70 (371)
+.+.+|++++|.|.+.... ....+.|||.. ..+. .. ...+|.|.+++.+|
T Consensus 10 ~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D 89 (232)
T 1dn0_B 10 GLLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTAAD 89 (232)
T ss_dssp CEECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred EEEeCCCcEEEEEEEccccCCCceEEEEEeCCCCCeEEEEEEecCCceeeCCccCCeEEEEEeCCCCEEEEEECCCCccc
Confidence 6899999999999765432 25679999832 1110 00 24589999999999
Q ss_pred CeEEEEEEEcCCC--C----eEEEEEEEEec---ceeeEec-CCceeeecC-CcEEEEEEecCC-CCCceEEEee-CCEE
Q psy14542 71 AGMYQCHVSADDD--S----AQMSAQVILGG---ELVEIAS-SNQVVVDVG-HRIELHCRVSPK-RLSSAKAWLK-DGLV 137 (371)
Q Consensus 71 ~G~Y~C~~~~~~~--~----~~~~~~l~v~~---~~~~~~~-~~~~~~~~g-~~v~l~C~~~~~-~~~~~v~W~~-~~~~ 137 (371)
+|.|.|.+.+..+ . ......|.|.. .+|.+.. .+...+..| +.++|.|.+.+. |.+..+.|++ +|..
T Consensus 90 ~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p~~~~~~g~~~v~L~C~~~g~~P~p~~v~W~~~~g~~ 169 (232)
T 1dn0_B 90 TAVYYCARPPHDTSGHYWNYWGQGTLVTVSSGSASAPTLFPLVSCENSPSDTSSVAVGCLAQDFLPDSITFSWKYKNNSD 169 (232)
T ss_dssp CEEEEEEECSSTTSCSCCSEECCCEEEEECSSCCBCCEEEEEECC------CCSEEEEEEEEEEBSSCCEEEEEETTSCE
T ss_pred CEEEEEEEecCCcCCchhhhcccceEEEEccCCCCCCceEEeccccccCCCCCcEEEEEEEEEEeCCCeEEEEEcCCCCc
Confidence 9999999984211 1 11235777763 2233332 223333578 999999999886 5434999999 8877
Q ss_pred eeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeec--CCccceeEEEeeccccceeeeee
Q psy14542 138 LRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDE--SDRYRSYQCRGVNKLTGASLLSV 206 (371)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~--~d~~g~y~C~~~~~~~~~~~~~~ 206 (371)
+... . ...... +.|. +.. .+.|.|..... +| .|.|+|.+.|. .+......
T Consensus 170 l~~~-~---~~~~~~--~~~~---------~~~--~s~L~i~~~~~~~~d-~g~ytC~v~n~-~~~~~~~~ 221 (232)
T 1dn0_B 170 ISST-R---GFPSVL--RGGK---------YAA--TSQVLLPSKDVMAGT-DEHVVCKVQHP-NGNKEKNV 221 (232)
T ss_dssp ECCE-E---ECCCEE--ETTE---------EEE--EEEEEECTTCC---C-CCEEEEEEECT-TCCEEEEE
T ss_pred eeeE-E---ECCccc--cCCc---------EEE--EEEEEEcHHHhcccC-CCeEEEEEEeC-CCCcceeE
Confidence 6431 0 000000 1132 222 25788887776 77 99999999998 55544433
No 359
>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...
Probab=99.66 E-value=1.4e-15 Score=122.34 Aligned_cols=170 Identities=15% Similarity=0.221 Sum_probs=102.1
Q ss_pred EEEeccCcEEEEEEecCCC-CCCeeEEEeCC--EE---E---e------------eC----------CeeEEEEccCCcC
Q psy14542 21 VVVDVGHRIELHCRVSPKR-LSSAKAWLKDG--LV---L---R------------RN----------SDEVLVLDRVQRE 69 (371)
Q Consensus 21 ~~~~~G~~v~l~C~~~~~~-~~~~~~W~~~~--~~---~---~------------~~----------~~~~l~i~~~~~~ 69 (371)
..+.+|++++|.|.+.... ....+.|+|++ .. + . .. ...+|.|.+++.+
T Consensus 10 ~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~ 89 (227)
T 1mju_H 10 ELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLSSLTSD 89 (227)
T ss_dssp EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred eEEcCCCCEEEEEEecCCccccceEEEEEeCCCCCcEEEEEEeccCCceeeCCccCCcEEEEEeCCCCeEEEEECCCCcc
Confidence 7899999999999665321 15779999842 11 1 0 00 3468999999999
Q ss_pred CCeEEEEEEEcCCCCe-EEEEEEEEec---ceeeEec-CCceeeecCCcEEEEEEecCC-CCCceEEEeeCCEEeeeCCe
Q psy14542 70 DAGMYQCHVSADDDSA-QMSAQVILGG---ELVEIAS-SNQVVVDVGHRIELHCRVSPK-RLSSAKAWLKDGLVLRRNSD 143 (371)
Q Consensus 70 d~G~Y~C~~~~~~~~~-~~~~~l~v~~---~~~~~~~-~~~~~~~~g~~v~l~C~~~~~-~~~~~v~W~~~~~~~~~~~~ 143 (371)
|+|.|.|.+.+..... .....|.|.. .+|.+.. .+...+..|+.++|.|.+.+. |.+..+.|++++..+.....
T Consensus 90 D~G~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~~~~~~ 169 (227)
T 1mju_H 90 DSAVYYCANKLGWFPYWGQGTLVTVSAAKTTAPSVYPLAPVCGDTSGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTF 169 (227)
T ss_dssp GCEEEEEEEEETTEEEECCCEEEEECSSCCBCCEEEEECCCC------CEEEEEEEEEEBSSCCEEEEGGGTBCTTEEEC
T ss_pred cCEEEEEEECCCCceEEcCcEEEEEcCCCCCCCEEEEecCCccccCCCcEEEEEEeecEeCCCeEEEEecCCCcCCcEEC
Confidence 9999999998753211 1234677763 2233332 233334679999999999876 54349999998875321100
Q ss_pred eEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeee
Q psy14542 144 EVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLT 214 (371)
Q Consensus 144 ~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~ 214 (371)
.... .. |.| .. .+.|.|..+.. | .|.|+|.+.|. .+...... .+.+.
T Consensus 170 -----~~~~-~~-g~~---------~~--~s~L~i~~~~~-~-~g~Y~C~a~n~-~~~~~~~~---~~~~~ 216 (227)
T 1mju_H 170 -----PAVL-QS-DLY---------TL--SSSVTVTSSTW-P-SQSITCNVAHP-ASSTKVDK---KIEPR 216 (227)
T ss_dssp -----CCEE-ET-TEE---------EE--EEEEEECTTTT-T-TSCCEEEEEEG-GGTEEEEE---ECCCC
T ss_pred -----Ccee-cC-CeE---------EE--EEEEEEchhhc-C-CCeEEEEEEEC-CCCcceEE---EeCCC
Confidence 0000 01 222 11 25688877766 4 49999999997 44443333 44444
No 360
>1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*
Probab=99.66 E-value=2.3e-15 Score=120.13 Aligned_cols=181 Identities=11% Similarity=0.132 Sum_probs=107.5
Q ss_pred ceeeecCCcEEEEEEecCCC-CCceEEEeeCCEEeeeCCeeEEEEcc-----cCcCCCeeEEEEEeCCceeEec-----c
Q psy14542 105 QVVVDVGHRIELHCRVSPKR-LSSAKAWLKDGLVLRRNSDEVLVLDR-----VQREDAGMYQCHIEDGKYHMLS-----S 173 (371)
Q Consensus 105 ~~~~~~g~~v~l~C~~~~~~-~~~~v~W~~~~~~~~~~~~~~~~~~~-----~~~~~~g~y~~~~~~~~~~~~~-----~ 173 (371)
...+.+|++++|.|.+.+.+ ....+.|++..... .....+.... ......+ ++.+.. +
T Consensus 9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~--~~~~l~~~~~~~~~~~~~~~~~---------R~~~~~~~~~~~ 77 (215)
T 1c5d_H 9 PGLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGK--GLEWIAAISSGGSPYYNSALKS---------RLSINRDTSKSQ 77 (215)
T ss_dssp CCEECTTCCEEEEEEECSSCTTSCCEEEEEECTTS--CCEEEEEECTTCCEECCTTTGG---------GEEEEEETTTTE
T ss_pred CeeecCCCcEEEEEEECCCcCCCCeEEEEEECCCC--CcEEEEEEcCCCCcEECCcccC---------cEEEEeeCCCce
Confidence 34558999999999998764 23789999853100 0011111111 0001112 333321 2
Q ss_pred ceEEEEEeecCCccceeEEEeeccccce---eeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecC-
Q psy14542 174 GELIIHQVDESDRYRSYQCRGVNKLTGA---SLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGN- 249 (371)
Q Consensus 174 ~~l~i~~~~~~d~~g~y~C~~~~~~~~~---~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~- 249 (371)
..|.|.+++.+| +|.|.|.+.+. .+. ..... .|.|.... ..+|.+........ +..|+.++|.|.+.+.
T Consensus 78 ~~L~I~~v~~~D-~G~Y~C~~~~~-~~~~~~~~~~~---~L~V~~~~-~~~P~i~~~~~~~~-~~~g~~v~L~C~~~g~~ 150 (215)
T 1c5d_H 78 VFLKMNSLQTED-TAIYFCTREDG-WNYFDYWGPGT---MVTVSSAQ-TTAPSVYPLAPGCG-DTTSSTVTLGCLVKGYF 150 (215)
T ss_dssp EEEEESSCCGGG-CEEEEEEECCS-SSCSCCBCCCE---EEEECSSC-CBCCCEEEECCCSS-CCCCSSEEEEEEEEEEB
T ss_pred EEEEECCCCccc-CEEEEEEEecC-CcccceEcCCE---EEEecCCC-CCCCeEEeccCChh-hccCCcEEEEEEEeeeE
Confidence 479999999999 99999999886 321 11122 56665321 13455544332333 6789999999999986
Q ss_pred CCC-ceEEEeCCcccccC-CceEEecceEE----EeccCCCCCeEEEEEEEcCCCCceeEE
Q psy14542 250 PLP-TIKWYKQDSPVEES-DRIQRIGSSLS----ISHVEESDSGVWNCVANNSEGQDKMQL 304 (371)
Q Consensus 250 p~~-~v~W~~~~~~~~~~-~~~~~~~~~l~----i~~~~~~d~G~Y~C~a~n~~g~~~~~~ 304 (371)
|.+ .+.|++++..+... ......++.+. +.....+| |.|+|.|.|..+......
T Consensus 151 P~p~~v~W~~~g~~~~~~~~~~~~~~g~~~~~s~L~~~~~~~-g~ytC~v~n~~~~~~~~~ 210 (215)
T 1c5d_H 151 PEPVTVTWNSGALSSDVHTFPAVLQSGLYTLTSSVTSSTWPS-QTVTCNVAHPASSTKVDK 210 (215)
T ss_dssp SSCCEEEEGGGTTCCSCCBCCCEEETTEEEEEEEEEESSTTT-SCCEEEEEEGGGTEEEEE
T ss_pred cCCcEEEEccCCccCceEecCcccCCCCEEEEEEEecccCCC-CeEEEEEEeCCCCccEEE
Confidence 777 99999998754321 11111112211 22344456 999999999998765443
No 361
>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*
Probab=99.66 E-value=1.7e-15 Score=121.82 Aligned_cols=161 Identities=18% Similarity=0.262 Sum_probs=103.0
Q ss_pred CCCcEEEeccCcEEEEEEecCCC-CCCeeEEEeCC--EE---Ee---------------eC----------CeeEEEEcc
Q psy14542 17 PSGQVVVDVGHRIELHCRVSPKR-LSSAKAWLKDG--LV---LR---------------RN----------SDEVLVLDR 65 (371)
Q Consensus 17 p~~~~~~~~G~~v~l~C~~~~~~-~~~~~~W~~~~--~~---~~---------------~~----------~~~~l~i~~ 65 (371)
|.. +.+.+|++++|.|.+.... ..+.+.|+|+. .. +. .. ...+|.|.+
T Consensus 7 p~~-~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~ 85 (225)
T 1op3_H 7 SGG-GLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHK 85 (225)
T ss_dssp ECC-EEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECS
T ss_pred CCC-eEecCCCCEEEEEEecCcccCCceEEEEEeCCCCCcEEEEEEccCCCccccCcccCCceEEEecCCCCEEEEEECC
Confidence 344 7899999999999665321 25779999842 11 10 00 246899999
Q ss_pred CCcCCCeEEEEEEEcCCC-----C---eEEEEEEEEec---ceeeEe-cCCceeeecCCcEEEEEEecCC-CCCceEEEe
Q psy14542 66 VQREDAGMYQCHVSADDD-----S---AQMSAQVILGG---ELVEIA-SSNQVVVDVGHRIELHCRVSPK-RLSSAKAWL 132 (371)
Q Consensus 66 ~~~~d~G~Y~C~~~~~~~-----~---~~~~~~l~v~~---~~~~~~-~~~~~~~~~g~~v~l~C~~~~~-~~~~~v~W~ 132 (371)
++.+|+|.|.|.+.+..+ . ....+.|.|.. .+|.+. ..+...+..|+.++|.|.+.+. |.+..+.|+
T Consensus 86 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~ 165 (225)
T 1op3_H 86 MRVEDTAIYYCARKGSDRLSDNDPFDAWGPGTVVTVSPASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWN 165 (225)
T ss_dssp CCGGGCEEEEEEEECCSSCCSSCCEEEECCCEEEEEESCSCBCCEEEEECCCTTCCCCCEEEEEEEEEEEBSSCCEEECC
T ss_pred CChhhCEEEEEEEecCCCccccccceeecCCEEEecccCCCcCCeEEEecccccccCCCcEEEEEEEEeEECCCeEEEEe
Confidence 999999999999998653 2 11235677763 123332 2222234689999999999876 542499999
Q ss_pred eCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeecc
Q psy14542 133 KDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNK 197 (371)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~ 197 (371)
+++..+... .. .... ...| .+.. .+.|.|.++..+| |.|+|.|.|.
T Consensus 166 ~~~~~~~~~-~~----~~~~-~~~g---------~~~~--~s~L~i~~~~~~~--g~Y~C~a~n~ 211 (225)
T 1op3_H 166 SGALTSGVH-TF----PAVL-QSSG---------LYSL--SSVVTVPSSSLGT--QTYICNVNHK 211 (225)
T ss_dssp TTSCCTTCE-EC----CCEE-CTTS---------CEEE--EEEEEEEGGGTTC--CCCCEEEEEG
T ss_pred cCCCcCCeE-ec----Ccee-CCCC---------CEEE--EEEEEEechhcCC--CcEEEEEEcC
Confidence 988642110 00 0000 1222 2222 2568888776554 9999999997
No 362
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=99.66 E-value=8.5e-16 Score=109.27 Aligned_cols=93 Identities=20% Similarity=0.245 Sum_probs=81.1
Q ss_pred cccceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccCCceEEe----cceEEEeccCCCCCeEEEEEEEc
Q psy14542 220 LSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI----GSSLSISHVEESDSGVWNCVANN 295 (371)
Q Consensus 220 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~a~n 295 (371)
.+|.+...+.... +..|+.+.|.|.+.|.|.+.+.|++++..+....++... ...|.|.++..+|+|.|+|.|.|
T Consensus 6 ~pp~i~~~~~~~~-v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N 84 (114)
T 2cqv_A 6 SGPQIIQFPEDQK-VRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVEN 84 (114)
T ss_dssp CCCEESCCCCSEE-EETTCCEEEEEEEESSSSCEEEEEESSSBCCCSSSEEEEECSSEEEEEETTCCTTTCEEEEEEEEC
T ss_pred CCCEEEeCCCCeE-EeCCCeEEEEEEEEcCCCCEEEEEECCEECcCCCCEEEEEcCCEEEEEECCCChhcCEEEEEEEEE
Confidence 4566666666666 999999999999999999999999999998877777644 46799999999999999999999
Q ss_pred CCCCceeEEEEEEecCcc
Q psy14542 296 SEGQDKMQLFIQYAHGKY 313 (371)
Q Consensus 296 ~~g~~~~~~~l~v~~~p~ 313 (371)
..|.....+.|.|.++|.
T Consensus 85 ~~g~~~~~~~l~V~~~p~ 102 (114)
T 2cqv_A 85 KLGSRQAQVNLTVVDKPD 102 (114)
T ss_dssp SSCEEECCEEEEEECSCS
T ss_pred CCCcEEEEEEEEEECCCC
Confidence 999999999999988766
No 363
>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E 2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D* 3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E 3kxf_E 2cde_B ...
Probab=99.66 E-value=9.3e-16 Score=125.57 Aligned_cols=173 Identities=13% Similarity=0.175 Sum_probs=107.2
Q ss_pred ceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCC--E--E-Ee-------------eC---------CeeEEEE
Q psy14542 11 LSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDG--L--V-LR-------------RN---------SDEVLVL 63 (371)
Q Consensus 11 ~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~--~--~-~~-------------~~---------~~~~l~i 63 (371)
..+...|.. +.+.+|++++|.|... .+...+.|+|+. . . +. .. ...+|.|
T Consensus 4 ~~v~q~p~~-v~v~~G~~v~L~C~~~--~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I 80 (252)
T 1oga_E 4 GGITQSPKY-LFRKEGQNVTLSCEQN--LNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTV 80 (252)
T ss_dssp -CEECSCSE-EEEETTCCEEECCEEC--SCCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEE
T ss_pred ccceEcCCe-EEEcCCCcEEEEEEeC--CCCCEEEEEEECCCCCeEEEEEEccCccccCCccCCcEEEEecCCCEEEEEE
Confidence 345555665 8899999999999763 346789999842 1 1 10 00 2458999
Q ss_pred ccCCcCCCeEEEEEEEcCCC---CeEEEEEEEEec-----ceeeEecC-Cc-eeeecCCcEEEEEEecCC-CCCceEEEe
Q psy14542 64 DRVQREDAGMYQCHVSADDD---SAQMSAQVILGG-----ELVEIASS-NQ-VVVDVGHRIELHCRVSPK-RLSSAKAWL 132 (371)
Q Consensus 64 ~~~~~~d~G~Y~C~~~~~~~---~~~~~~~l~v~~-----~~~~~~~~-~~-~~~~~g~~v~l~C~~~~~-~~~~~v~W~ 132 (371)
.+++.+|+|.|.|.+.+... .......|.|.. .+|.+... +. ..+..|+.++|.|.+.+. |.++.+.|+
T Consensus 81 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~ 160 (252)
T 1oga_E 81 TSAQKNPTAFYLCASSSRSSYEQYFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWW 160 (252)
T ss_dssp CSCCSCCCEEEEEEEESSTTSCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEE
T ss_pred CcCChhhCEEEEEEEecCCccceeECCCEEEEEecccCCCCCCeEEEECCChhhhccCCceEEEEEEeeEcCCCcEEEEE
Confidence 99999999999999987521 111223466652 23444332 21 122468999999999886 443599999
Q ss_pred eCCEEeeeCCeeE-EEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeecc
Q psy14542 133 KDGLVLRRNSDEV-LVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNK 197 (371)
Q Consensus 133 ~~~~~~~~~~~~~-~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~ 197 (371)
+++..+....... ...........|.| .+. +.|.|......|+.|.|+|.+.|.
T Consensus 161 ~~g~~l~~~~~~~~~~~~~~~~~~~gt~---------~~~--s~L~i~~~~~~d~~~~ytC~v~~~ 215 (252)
T 1oga_E 161 VNGKEVHSGVSTDPQPLKEQPALNDSRY---------SLS--SRLRVSATFWQNPRNHFRCQVQFY 215 (252)
T ss_dssp ETTEEECSSEEECSSCEESCTTSTTCCE---------EEE--EEEEEEHHHHTCTTCEEEEEEEEC
T ss_pred ECCEECCCCcccccccccccccCCCCCE---------EEE--EEEEECHHHhccCCCEEEEEEEcC
Confidence 9998876432100 00000111233333 222 567787766543278899999987
No 364
>3tv3_H PGT128 heavy chain, IG gamma-1 chain C region; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_H* 3twc_H* 3tje_H* 3thm_H* 4fqq_H 2xzc_H* 2xza_H* 3b2u_H* 3b2v_H* 3mly_H 3mlz_H 4fq2_H 2ykl_H* 3tnm_H 4fqc_H* 4fq1_H* 2yk1_H* 3mlx_H 2jix_D 2vxq_H ...
Probab=99.66 E-value=1e-15 Score=124.26 Aligned_cols=198 Identities=14% Similarity=0.167 Sum_probs=112.0
Q ss_pred CceeeecCCcEEEEEEecCCCC---CceEEEeeCCEEeeeCCeeEEEEcc--cCcCCCeeEEEEEeCCceeEec-----c
Q psy14542 104 NQVVVDVGHRIELHCRVSPKRL---SSAKAWLKDGLVLRRNSDEVLVLDR--VQREDAGMYQCHIEDGKYHMLS-----S 173 (371)
Q Consensus 104 ~~~~~~~g~~v~l~C~~~~~~~---~~~v~W~~~~~~~~~~~~~~~~~~~--~~~~~~g~y~~~~~~~~~~~~~-----~ 173 (371)
+...+.+|++++|.|.+.+.+. ...+.|++.... ......+.+.. ....+...+......+++.+.. +
T Consensus 8 ~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~rq~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~ 85 (239)
T 3tv3_H 8 GPTLVEASETLSLTCAVSGDSTAACNSFWGWVRQPPG--KGLEWVGSLSHCASYWNRGWTYHNPSLKSRLTLALDTPKNL 85 (239)
T ss_dssp SCSEECTTSCEEEEEEEESSCTTSSSCEEEEEEECTT--SCCEEEEEEECCCCTTSSCEEEECTTTGGGEEEEEEGGGTE
T ss_pred CCEEEcCCCCEEEEEEEcCCcccccceEEEEEEECCC--CCcEEEEEEecccccccCCceecCccccCCEEEEEECCCCE
Confidence 3445689999999999976542 258999984310 00111111110 0000000000000012333332 2
Q ss_pred ceEEEEEeecCCccceeEEEeeccccc---------e-eeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEE
Q psy14542 174 GELIIHQVDESDRYRSYQCRGVNKLTG---------A-SLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILP 243 (371)
Q Consensus 174 ~~l~i~~~~~~d~~g~y~C~~~~~~~~---------~-~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~ 243 (371)
..|.|.+++.+| +|.|.|.+.+. .+ . .........+.|... ...+|.+........ +..|+.+.|.
T Consensus 86 ~~L~I~~v~~~D-sG~Y~C~~~~~-~~~~~~~w~~~~~~~~~~~~t~l~V~~~-~~~~P~v~~~~~~~~-~~~g~~v~l~ 161 (239)
T 3tv3_H 86 VFLKLNSVTAAD-TATYYCARFGG-EVLRYTDWPKPAWVDLWGRGTLVTVSSA-STKGPSVFPLAPSSK-STSGGTAALG 161 (239)
T ss_dssp EEEEECSCCGGG-CEEEEEEEEEE-ECSSCSSSCEEEEEEEECCCEEEEECCC-CCBCCEEEEECCCCC-C--TTEEEEE
T ss_pred EEEEECCCChhh-CEEEEEEEecC-ccccccccccccceeeeCCCcEEeeccC-CCcCCEEEEECCChh-hccCCcEEEE
Confidence 469999999999 99999999865 21 0 011111114555421 114455554333333 5679999999
Q ss_pred EEeec-CCCC-ceEEEeCCcccccC--------CceEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEE
Q psy14542 244 CSAQG-NPLP-TIKWYKQDSPVEES--------DRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQY 308 (371)
Q Consensus 244 C~~~~-~p~~-~v~W~~~~~~~~~~--------~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 308 (371)
|.+.+ .|.+ .+.|++++..+... .......+.|.|.....+| |.|+|.|.|..+.......|.+
T Consensus 162 C~~~~~~p~~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~l~~ 235 (239)
T 3tv3_H 162 CLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEP 235 (239)
T ss_dssp EEEEEEBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGTEEEEEECCC
T ss_pred EEEeeEeCCCeEEEEEECCccCceEecCceECCCCCEEEEEEEEEchhhcCC-CEEEEEEEECCCCceEEEEecc
Confidence 99987 4544 48999988643211 1111223468899888888 9999999999887666655544
No 365
>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens}
Probab=99.65 E-value=1.5e-15 Score=124.42 Aligned_cols=170 Identities=15% Similarity=0.170 Sum_probs=103.5
Q ss_pred EEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeC--CE---EEee---------------C-------CeeEEEEccC
Q psy14542 14 EMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKD--GL---VLRR---------------N-------SDEVLVLDRV 66 (371)
Q Consensus 14 ~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~--~~---~~~~---------------~-------~~~~l~i~~~ 66 (371)
...|.. +.+.+|++++|.|.. .+.+...+.|+|. +. .+.. . ... |.|.++
T Consensus 5 ~q~p~~-v~v~~G~~v~L~C~~-~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~-L~I~~v 81 (253)
T 3to4_D 5 EQNPRW-RLVPRGQAVNLRCIL-KNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTE-LRLQVA 81 (253)
T ss_dssp EEECSE-EEEESSCCEEEEEEC-SCTTCCCEEEEEEETTCCEEEEEEECSTTCEEEEEETTEEEEEECCSSSC-CEEEEE
T ss_pred EeCCCe-EEEeCCCcEEEEEEe-CCCCcceEEEEEECCCCCcEEEEEECCCcceecCCccCCcEEEEeCCCCe-EEEccC
Confidence 344555 889999999999964 4566788999981 11 0000 0 111 999999
Q ss_pred CcCCCeEEEEEEEcCCC---Ce---EEEEEEEEec-----ceeeEecCCc--eeeecCCcEEEEEEecCC-CCCceEEEe
Q psy14542 67 QREDAGMYQCHVSADDD---SA---QMSAQVILGG-----ELVEIASSNQ--VVVDVGHRIELHCRVSPK-RLSSAKAWL 132 (371)
Q Consensus 67 ~~~d~G~Y~C~~~~~~~---~~---~~~~~l~v~~-----~~~~~~~~~~--~~~~~g~~v~l~C~~~~~-~~~~~v~W~ 132 (371)
+.+|+|.|.|.+.+..+ .. .....|.|.. .+|.+..... ..+..|+.++|.|.+.+. |.+..++|+
T Consensus 82 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~i~v~W~ 161 (253)
T 3to4_D 82 NMSQGRTLYCTSSADHWTNTGQLYFGEGSKLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWW 161 (253)
T ss_dssp SCSSCEEEEEEEECSCCSTTCCEEECCCEEEEEESCSTTCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEEEEE
T ss_pred ChhhCeEEEEEEecCCCCcccceEECCCEEEEEecCCCCCCCCeEEEeCCChhhcccCCceEEEEEEceEECCcEEEEEE
Confidence 99999999999986543 11 1224555542 2333322111 111356899999999884 443489999
Q ss_pred eCCEEeeeCCeeEE-EEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeecc
Q psy14542 133 KDGLVLRRNSDEVL-VLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNK 197 (371)
Q Consensus 133 ~~~~~~~~~~~~~~-~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~ 197 (371)
++|..+........ ..........|.| ... +.|.|.....+|..|.|+|.+.+.
T Consensus 162 k~g~~l~~~~~~~~~~~~~~~~~~~g~~---------~~~--s~l~i~~~~~~d~~~~ytC~v~h~ 216 (253)
T 3to4_D 162 VNGKEVHSGVSTDPQPLKEQPALNDSRY---------ALS--SRLRVSATFWQNPRNHFRCQVQFY 216 (253)
T ss_dssp ETTEEECTTEEECSSCEESSTTCTTCCE---------EEE--EEEEEEHHHHTCTTCEEEEEEEEC
T ss_pred ECCEECCCceecccccccccccCCCCCE---------EEE--EEEEECHHHhccCCCEEEEEEEeC
Confidence 99998765321100 0000111123333 222 567787776666356999999987
No 366
>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...
Probab=99.65 E-value=2.5e-15 Score=121.04 Aligned_cols=163 Identities=13% Similarity=0.210 Sum_probs=102.8
Q ss_pred CCCcEEEeccCcEEEEEEecCCCCC----CeeEEEeC--CEE---Eee--------------C----------CeeEEEE
Q psy14542 17 PSGQVVVDVGHRIELHCRVSPKRLS----SAKAWLKD--GLV---LRR--------------N----------SDEVLVL 63 (371)
Q Consensus 17 p~~~~~~~~G~~v~l~C~~~~~~~~----~~~~W~~~--~~~---~~~--------------~----------~~~~l~i 63 (371)
|.. +.+.+|++++|.|.+.. .+. +.+.|+|+ +.. +.. . ...+|.|
T Consensus 7 p~~-~~v~~G~~v~L~C~~~~-~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I 84 (228)
T 3bae_H 7 SGP-GLLKPSQTLSLTCSFSG-FSIRTSKVGVSWIRQPSGKGLEWLAHIYWDDDKRYNPSLESRLTISKDTSRDMVFMKI 84 (228)
T ss_dssp ECC-SEECTTCCEEEEEEEES-SCHHHHCCEEEEEEEETTCCCEEEEEECTTSCEEECTTTGGGEEEEEETTTTEEEEEE
T ss_pred CCc-eeecCCCeEEEEEEEeC-cccCCCceeEEEEEECCCCCeEEEEEEecCCceeeCcccCCcEEEEEcCCCCeEEEEE
Confidence 444 68999999999996653 332 78999983 211 100 0 2478999
Q ss_pred ccCCcCCCeEEEEEEEcCCC------C--e-EEEEEEEEec---ceeeEec-CCceeeecCCcEEEEEEecCC-CCCceE
Q psy14542 64 DRVQREDAGMYQCHVSADDD------S--A-QMSAQVILGG---ELVEIAS-SNQVVVDVGHRIELHCRVSPK-RLSSAK 129 (371)
Q Consensus 64 ~~~~~~d~G~Y~C~~~~~~~------~--~-~~~~~l~v~~---~~~~~~~-~~~~~~~~g~~v~l~C~~~~~-~~~~~v 129 (371)
.+++.+|+|.|.|.+.+..+ . . ...+.|.|.. .+|.+.. .+...+.+|+.++|.|.+.+. |.+..+
T Consensus 85 ~~v~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~~~l~C~~~g~~P~p~~v 164 (228)
T 3bae_H 85 TSVDTADTATYYCARRGFYGRKYEVNHFDYWGQGTTLTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTL 164 (228)
T ss_dssp CSCCGGGCEEEEEEEEEESTTCTTSEEEEEECCCEEEEECSCCCBCCEEEEECC-----CCSEEEEEEEEEEEBSSCCEE
T ss_pred cCCCcccCEEEEEEEecCCCccccccceeeeCCcEEEEecCCCCCCCEEEEecccccccCCCCEEEEEEEccEeCCCEEE
Confidence 99999999999999987653 1 1 1235677763 2333332 333334689999999999886 552499
Q ss_pred EEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeecccccee
Q psy14542 130 AWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGAS 202 (371)
Q Consensus 130 ~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~ 202 (371)
.|++++..+..... .... .. |.| .. .+.|.|..+.. | .|.|+|.+.|. .+..
T Consensus 165 ~W~~~~~~~~~~~~-~~~~-----~~-~~~---------~~--~s~L~i~~~~~-d-~g~YtC~~~n~-~~~~ 216 (228)
T 3bae_H 165 TWNSGSLSSGVHTF-PAVL-----QS-DLY---------TL--SSSVTVTSSTW-P-SESITCNVAHP-ASST 216 (228)
T ss_dssp EEGGGTCCTTEEEE-EEEE-----ET-TEE---------EE--EEEEEEETTTT-T-TSCCEEEEEEG-GGTE
T ss_pred EEeeCCcccCceEc-Ccee-----CC-CcE---------EE--EEEEEEEhhhc-C-CCcEEEEEEEC-CCCC
Confidence 99998764311100 0000 01 222 21 25788887776 6 59999999998 5543
No 367
>2aty_A Complement receptor chimeric conjugate CR2-IG; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}
Probab=99.65 E-value=1.6e-15 Score=131.53 Aligned_cols=169 Identities=11% Similarity=0.162 Sum_probs=111.4
Q ss_pred ceEEEeCCCcEE-EeccCcEEEEEEecCCC--C-CCeeEEEeCCEEEeeC--------------CeeEEEEccCCcCCCe
Q psy14542 11 LSIEMSPSGQVV-VDVGHRIELHCRVSPKR--L-SSAKAWLKDGLVLRRN--------------SDEVLVLDRVQREDAG 72 (371)
Q Consensus 11 ~~~~~~p~~~~~-~~~G~~v~l~C~~~~~~--~-~~~~~W~~~~~~~~~~--------------~~~~l~i~~~~~~d~G 72 (371)
+.+.+.+..... +..|++++|.|.+.... | ...|.|+|++..+... ....|.|.+++.+|+|
T Consensus 167 p~v~~~~p~~~~~~~~g~~v~L~C~~~g~~P~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~g 246 (376)
T 2aty_A 167 SSVFIFPPKPKDVLTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTQPREEQFNSTFRSVSELPIMHQDWLNGK 246 (376)
T ss_pred cEEEEeCcCHHHceeeCCeeEEEEEEeccccCCCccEEEEEECCccccCcccCCCCcccCCcEEEEEEEEechHhccCCC
Confidence 555555544234 78999999999765442 3 2469999988655321 2347999999999999
Q ss_pred EEEEEEEcCCCCeEEEEEE----EEecceeeEecCCcee-eecCCcEEEEEEecCCCC-CceEEEeeCCEEeeeCCeeEE
Q psy14542 73 MYQCHVSADDDSAQMSAQV----ILGGELVEIASSNQVV-VDVGHRIELHCRVSPKRL-SSAKAWLKDGLVLRRNSDEVL 146 (371)
Q Consensus 73 ~Y~C~~~~~~~~~~~~~~l----~v~~~~~~~~~~~~~~-~~~g~~v~l~C~~~~~~~-~~~v~W~~~~~~~~~~~~~~~ 146 (371)
.|+|.+.+..+.......+ .+. .+|.+...+... ...|+.++|.|.+.+..+ .+.|+|++++..+.....
T Consensus 247 ~Y~C~~~~~~~~~~~~~~v~~~~~~~-~~P~v~v~~~~~~~~~g~~~~L~C~~~g~~P~~i~v~W~k~g~~~~~~~~--- 322 (376)
T 2aty_A 247 EFKCRVNSAAFPAPIEKTISKTKGRP-KAPQLYTIPPPKEQMAKDKVSLTCMITDFFPEDITVEWQWNGQPAENYKN--- 322 (376)
T ss_pred EEEEEEecCCCCCceEEEEcCCCCCC-cCCeEEeeCCCHHHhcCCceEEEEEEEEeECCCcEEEEEECCEECCCeEe---
Confidence 9999999876643332233 233 345544433332 246889999999998633 479999999987643211
Q ss_pred EEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeecc
Q psy14542 147 VLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNK 197 (371)
Q Consensus 147 ~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~ 197 (371)
.......+|.| .+. +.|.|.....+| .|.|+|.|.+.
T Consensus 323 --~~~~~~~dgty---------~~~--s~L~i~~~~~~~-~~~YtC~v~h~ 359 (376)
T 2aty_A 323 --TQPIMNTNESY---------FVY--SKLNVQKSNWEA-GNTFTCSVLHE 359 (376)
T ss_pred --CCceECCCCCE---------EEE--EEEEEcHHHhCC-CCcEEEEEEeC
Confidence 11111233333 222 567788777788 99999999987
No 368
>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine; HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*
Probab=99.65 E-value=4e-16 Score=125.98 Aligned_cols=171 Identities=14% Similarity=0.175 Sum_probs=107.8
Q ss_pred ccceEEEeCCCcEE-EeccCcEEEEEEecCCC--C-CCeeEEEeCCEEEeeC--------------CeeEEEEccCCcCC
Q psy14542 9 SSLSIEMSPSGQVV-VDVGHRIELHCRVSPKR--L-SSAKAWLKDGLVLRRN--------------SDEVLVLDRVQRED 70 (371)
Q Consensus 9 ~~~~~~~~p~~~~~-~~~G~~v~l~C~~~~~~--~-~~~~~W~~~~~~~~~~--------------~~~~l~i~~~~~~d 70 (371)
.+|.+.+.+..... +..|+.++|.|.+.... | ...+.|+|||..+... ....|.|.....+|
T Consensus 21 ~~P~v~i~~ps~~~~l~~g~~~~L~C~v~g~~p~P~~i~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d 100 (240)
T 4acp_A 21 GGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLN 100 (240)
T ss_dssp --CEEEEECCCHHHHHSSSSCCEEEEEEESCCC--CCCEEEEEETTEEECCCEECCCEEC---CEEEEEEEECCHHHHHH
T ss_pred CCCEEEEECcChHHhcccCCCcEEEEEEeccccCCCccEEEEEECCcccCCceeccceECCCCeEEEEEEEEEechhccC
Confidence 35777777776444 55799999999776655 4 4579999999987422 12467788777778
Q ss_pred CeEEEEEEEcCCCCe--EEEEEE--EEecceeeEecCCcee-eecCCcEEEEEEecCC-CCCceEEEeeCCEEeeeCCee
Q psy14542 71 AGMYQCHVSADDDSA--QMSAQV--ILGGELVEIASSNQVV-VDVGHRIELHCRVSPK-RLSSAKAWLKDGLVLRRNSDE 144 (371)
Q Consensus 71 ~G~Y~C~~~~~~~~~--~~~~~l--~v~~~~~~~~~~~~~~-~~~g~~v~l~C~~~~~-~~~~~v~W~~~~~~~~~~~~~ 144 (371)
.|.|+|.+.+..+.. ...+.+ .+. .+|.+...+... ...|+.++|.|.+.++ |....++|+++|..+....
T Consensus 101 ~~~YtC~v~h~~~~~~~~~~i~~~~~~~-~~P~V~v~~~~~~~~~g~~~~L~C~~~gf~P~~i~v~W~k~g~~~~~~~-- 177 (240)
T 4acp_A 101 GKEYKCKVSNKALPAPIEKTISKAKGQP-REPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYK-- 177 (240)
T ss_dssp TCCEEEEEECC----CEEEEECCCCSCC-BCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEE--
T ss_pred CCEEEEEEEcCCCCccccccccccCCCC-CCCEEEEECCChHHhcCCceEEEEEEeEEeCCCcEEEEEECCEECCCcC--
Confidence 999999999876643 233332 122 334443332221 2358999999999885 4435899999998754211
Q ss_pred EEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeecc
Q psy14542 145 VLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNK 197 (371)
Q Consensus 145 ~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~ 197 (371)
........+|.| .+. +.|.+......+ .|.|+|.+.+.
T Consensus 178 ---~~~~~~~~dgt~---------~~~--s~L~v~~~~~~~-~~~ytC~V~h~ 215 (240)
T 4acp_A 178 ---ATPPVLDSDGSF---------FLY--SKLTVDKSRWQQ-GNVFSCSVMHE 215 (240)
T ss_dssp ---ECCCEECTTSCE---------EEE--EEEEEEHHHHHT-TCCEEEEEECT
T ss_pred ---ccCceECCCCCE---------EEE--EEEEEChHHhCC-CCEEEEEEEEC
Confidence 111111223333 222 567777666667 89999999987
No 369
>3qhz_H Human monoclonal antibody DEL2D1, FAB heavy chain; immunoglobulin, immune recognition, influenza A hemagglutini system; 1.55A {Homo sapiens} PDB: 3lzf_H* 3qrg_H* 3mod_H 3mob_H 3moa_H 3lev_H* 3idg_B 3d0l_B 3d0v_B 3idi_B 3idj_B 3idm_B* 3idn_B* 1tjg_H* 1tjh_H* 1tji_H* 2pr4_H 3drq_B 2p8m_B 2p8p_B ...
Probab=99.65 E-value=3.2e-15 Score=120.80 Aligned_cols=187 Identities=10% Similarity=0.139 Sum_probs=108.0
Q ss_pred CceeeecCCcEEEEEEecCCC---CCceEEEeeCCEEeeeCCeeEEEEccc--------CcCCCeeEEEEEeCCceeEec
Q psy14542 104 NQVVVDVGHRIELHCRVSPKR---LSSAKAWLKDGLVLRRNSDEVLVLDRV--------QREDAGMYQCHIEDGKYHMLS 172 (371)
Q Consensus 104 ~~~~~~~g~~v~l~C~~~~~~---~~~~v~W~~~~~~~~~~~~~~~~~~~~--------~~~~~g~y~~~~~~~~~~~~~ 172 (371)
+...+.+|++++|.|.+.+.. ....+.|++.... ......+.+... .....+ ++.+..
T Consensus 8 ~~~~v~~G~~v~L~C~~~~~~~~~~~i~v~W~r~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~---------R~~~~~ 76 (232)
T 3qhz_H 8 GPALVKPTQTLTLTCSFSGFSLSTSGMSVSWIRQPPG--KALEWLALIDWDDDTYYITYSSSLKT---------RLTISK 76 (232)
T ss_dssp CCSEECTTSCEEEEEEEESCGGGCTTCEEEEEEECTT--SCCEEEEEEESSSSCEEECCCTTTTT---------TEEEEE
T ss_pred CCEEECCCCcEEEEEEEeCcccccceeEeEEEEECCC--CCcEEEEEEECCCCccccccCccccC---------ceEEEe
Confidence 344568999999999997532 1134499984310 011111111100 011122 333332
Q ss_pred -----cceEEEEEeecCCccceeEEEeecccc--------ceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCe
Q psy14542 173 -----SGELIIHQVDESDRYRSYQCRGVNKLT--------GASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDES 239 (371)
Q Consensus 173 -----~~~l~i~~~~~~d~~g~y~C~~~~~~~--------~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~ 239 (371)
+..|.|.+++.+| +|.|.|.+.+. . ....... .+.|... ...+|.+........ +..|+.
T Consensus 77 ~~~~~~~sL~I~~v~~~D-sG~Y~C~~~~~-~~~~~~~~~~~~~~~~---~l~V~~~-~~~~P~v~~~~~~~~-~~~g~~ 149 (232)
T 3qhz_H 77 DTSKSQVVLTMTNMDPVD-TATYYCARTLR-VSGDYVRDFDLWGRGT---LVTVSSA-STKGPSVFPLAPSSK-STSGGT 149 (232)
T ss_dssp ETTTTEEEEEECSCCGGG-CEEEEEEEECC-C---CCCCCCEECCCE---EEEECSS-CCBCCEEEEECC--------CE
T ss_pred ccCCCEEEEEECcCChhh-CEEEEEEEeec-cCccccccceeeCCCe---EEEEecC-CCCCCEEEEeccccc-ccCCCc
Confidence 2469999999999 99999999865 2 1111112 4555421 114455553333333 667999
Q ss_pred EEEEEEeecCCC--CceEEEeCCcccccC--------CceEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEe
Q psy14542 240 VILPCSAQGNPL--PTIKWYKQDSPVEES--------DRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYA 309 (371)
Q Consensus 240 ~~l~C~~~~~p~--~~v~W~~~~~~~~~~--------~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 309 (371)
++|.|.+.+.++ ..+.|++++..+... .......+.|.|......| |.|+|.|.|..+.......|.+.
T Consensus 150 v~L~C~~~~~~P~~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~ytC~v~~~~~~~~~~~~l~~~ 228 (232)
T 3qhz_H 150 AALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEPK 228 (232)
T ss_dssp EEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGGGT-CCCEEEEEEGGGTEEEEEECCCC
T ss_pred EEEEEEEeeEeCCCeEEEEEECCEecceeeccceeCCCCCEEEEEEEEEchhhcCC-CEEEEEEEeCCCCccEEEEeCCC
Confidence 999999987443 358899988643211 1111223468899988889 99999999998887776666554
No 370
>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ...
Probab=99.65 E-value=6.1e-16 Score=125.52 Aligned_cols=168 Identities=11% Similarity=0.211 Sum_probs=104.7
Q ss_pred EEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCC--E---EEe-------------e---------CCeeEEEEcc
Q psy14542 13 IEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDG--L---VLR-------------R---------NSDEVLVLDR 65 (371)
Q Consensus 13 ~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~--~---~~~-------------~---------~~~~~l~i~~ 65 (371)
+...|.. +.+.+|++++|.|.+. .+.+.+.|+|++ . .+. . ....+|.|.+
T Consensus 2 v~q~p~~-v~v~~G~~v~L~C~~~--~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~ 78 (238)
T 1bec_A 2 VTQSPRN-KVAVTGGKVTLSCQQT--NNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQEQFSLILEL 78 (238)
T ss_dssp EEEECSE-EEEETTCCEEEEEEES--SCCSEEEEEEECTTSCEEEEEEEEETTEEEECSCCTTCEEECCSSSEEEEEESS
T ss_pred cccCCCe-eEEeCCCcEEEEEEeC--CCCceEEEEEECCCCCEEEEEEEeCCCcccCCCccceEEEEecCCCEEEEEEec
Confidence 3445555 8899999999999763 356789999842 1 110 0 1346899999
Q ss_pred CCcCCCeEEEEEEEcCCC----Ce-EEEEEEEEec-----ceeeEecC-Cc-eeeecCCcEEEEEEecCC-CCCceEEEe
Q psy14542 66 VQREDAGMYQCHVSADDD----SA-QMSAQVILGG-----ELVEIASS-NQ-VVVDVGHRIELHCRVSPK-RLSSAKAWL 132 (371)
Q Consensus 66 ~~~~d~G~Y~C~~~~~~~----~~-~~~~~l~v~~-----~~~~~~~~-~~-~~~~~g~~v~l~C~~~~~-~~~~~v~W~ 132 (371)
++.+|+|.|.|.+.+..+ .. .....|.|.. .+|.+... +. ..+..|+.++|.|.+.+. |.+..+.|+
T Consensus 79 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~ 158 (238)
T 1bec_A 79 ATPSQTSVYFCASGGGRGSYAEQFFGPGTRLTVLEDLRQVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWW 158 (238)
T ss_dssp CCGGGCEEEEEEEESCTTCGGGCEECCCEEEEEESCGGGCBCCEEEEECCCSTTCSSSCSCSEEEEEEEEBSCCEEEEEE
T ss_pred CCcccCEEEEEEEecCCCCccccccCCCEEEEEeccCCCCCCCceEEECCChHHcccCCceEEEEEEeeEeCCCcEEEEE
Confidence 999999999999997632 11 1224566653 23444332 22 223579999999999886 443599999
Q ss_pred eCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeecc
Q psy14542 133 KDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNK 197 (371)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~ 197 (371)
+++..+....... ....... ++.+.+. +.|.|......|+.|.|+|.+.|.
T Consensus 159 ~~g~~~~~~~~~~---~~~~~~~---------~g~~~~~--s~L~i~~~~~~d~~~~ytC~v~~~ 209 (238)
T 1bec_A 159 VNGKEVHSGVSTD---PQAYKES---------NYSYCLS--SRLRVSATFWHNPRNHFRCQVQFH 209 (238)
T ss_dssp ETTEEECTTEEEC---SSCEEEE---------TTEEEEE--EEECCCHHHHTCTTCEEEEEEEEC
T ss_pred ECCEECCCceecc---cceEeCC---------CCCEEEE--EEEEEcHHHhccCCCeEEEEEEcC
Confidence 9998876432100 0000011 1222221 345555555444267899999987
No 371
>3n9g_H FAB fragment of MAB CR4354, heavy chain; human neutralizing antibody, immun anti-WEST NIle virus; 1.43A {Homo sapiens} PDB: 3iyw_H 3qeh_A 3sqo_H 4hk0_A 4hk3_J 4hkx_A* 3u0t_D 3c08_H 3lmj_H 3lqa_H* 3c09_H* 4dn3_H 3pp4_H 3pp3_H 4hkb_J 2jb5_H* 2jb6_B* 2eh7_H 2eh8_H 3jwd_H* ...
Probab=99.65 E-value=8.1e-15 Score=118.19 Aligned_cols=196 Identities=10% Similarity=0.137 Sum_probs=113.6
Q ss_pred CceeeecCCcEEEEEEecCCC-CCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEecc-----ceEE
Q psy14542 104 NQVVVDVGHRIELHCRVSPKR-LSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSS-----GELI 177 (371)
Q Consensus 104 ~~~~~~~g~~v~l~C~~~~~~-~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~-----~~l~ 177 (371)
+...+.+|++++|.|.+.+.. ....+.|++.... ......+.+.... ...+......+++.+..+ ..|.
T Consensus 8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~rq~~~--~~~~~~~~~~~~~---~~~~~~~~~~~R~~~~~~~~~~~~sL~ 82 (230)
T 3n9g_H 8 GAEVRKPGASTKVSCKASGYTFTHYYMHWVRQAPG--QGLEWMGIINPSG---GSTTYAQKLQGRVTMTRDTSTSTVYME 82 (230)
T ss_dssp CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTT--SCEEEEEEECTTT---CCEEECGGGTTTEEEEEETTTTEEEEE
T ss_pred CCEEEcCCCCEEEEEEeecceecCcEEEEEEECCC--CCcEEEEEEecCC---CceecCcccCCcEEEEecCCCCEEEEE
Confidence 344568999999999997532 2268999973210 0001111111100 000000000224433322 3599
Q ss_pred EEEeecCCccceeEEEeecccc----ceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecC-C-C
Q psy14542 178 IHQVDESDRYRSYQCRGVNKLT----GASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGN-P-L 251 (371)
Q Consensus 178 i~~~~~~d~~g~y~C~~~~~~~----~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-p-~ 251 (371)
|.+++.+| +|.|.|.+.+... +..........+.|..... .+|.+........ +..|+.+.|.|.+.+. | .
T Consensus 83 I~~v~~~D-sG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~-~~P~v~~~~~~~~-~~~g~~v~L~C~~~~~~P~~ 159 (230)
T 3n9g_H 83 LSSLRSED-TAVYYCARDWGSNYVWGSYPKYWGQGTLVTVSSAST-KGPSVFPLAPSSK-STSGGTAALGCLVKDYFPEP 159 (230)
T ss_dssp ECSCCGGG-CEEEEEEEECCCSSSTTCCEEEECCCEEEEECSSCC-BCCEEEEECCCCC-CCTTCEEEEEEEEEEEBSSC
T ss_pred ECCCChhh-CEEEEEEEccCCCCcccccccccCCCEEEEEEecCC-CCCEEEecCCCcc-ccCCCCEEEEEEEEeEECCC
Confidence 99999999 9999999987510 1111111112555542211 3455543333333 6689999999999874 4 3
Q ss_pred CceEEEeCCcccccCC----------ceEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEec
Q psy14542 252 PTIKWYKQDSPVEESD----------RIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAH 310 (371)
Q Consensus 252 ~~v~W~~~~~~~~~~~----------~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~ 310 (371)
+.+.| ++..+.... ......+.|.|.....+| |.|+|.|.|..+.......|.|.+
T Consensus 160 ~~v~W--~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~~~v~~ 225 (230)
T 3n9g_H 160 VTVSW--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEPKS 225 (230)
T ss_dssp CEEEE--GGGTBCTTEEECCCEECTTSCEEEEEEEEEESTTBTT-BCCEEEEEEGGGTEEEEEECCCCT
T ss_pred EEEEE--CCcccCCCeEeCCceECCCCCEEEEEEEEECHHHcCC-CeEEEEEEECCCCcceEEEccCCC
Confidence 56999 655443211 111122478999999999 999999999988877777766654
No 372
>3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H
Probab=99.65 E-value=3.9e-15 Score=121.90 Aligned_cols=165 Identities=14% Similarity=0.196 Sum_probs=101.1
Q ss_pred EEEeccCcEEEEEEecC-CCCCCeeEEEeCC-----EEEee-------------------------CCeeEEEEccCCcC
Q psy14542 21 VVVDVGHRIELHCRVSP-KRLSSAKAWLKDG-----LVLRR-------------------------NSDEVLVLDRVQRE 69 (371)
Q Consensus 21 ~~~~~G~~v~l~C~~~~-~~~~~~~~W~~~~-----~~~~~-------------------------~~~~~l~i~~~~~~ 69 (371)
+.+.+|++++|.|.+.. ..+...+.|+|.. ..+.. ....+|.|.+++.+
T Consensus 10 v~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~ 89 (253)
T 3liz_H 10 GLVQPGGSLKLSCAASGFTFSSFAMSWGRQTPDKRLELVATINSNGASTYYPDTVKGRFTISRDNAKNTLFLQMSSLKSE 89 (253)
T ss_dssp CEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEECCTTTTTTCEEEEEGGGTEEEEEECSCCGG
T ss_pred EEECCCCcEEEEEEeeCccccCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEEeCCCCEEEEEECCCChh
Confidence 78999999999997653 2235679999831 11100 03456999999999
Q ss_pred CCeEEEEEEEcCC----CCeEEEEEEEEe---cceeeEe-cCCceeeecCCcEEEEEEecC-CCCCceEEEeeCCEEeee
Q psy14542 70 DAGMYQCHVSADD----DSAQMSAQVILG---GELVEIA-SSNQVVVDVGHRIELHCRVSP-KRLSSAKAWLKDGLVLRR 140 (371)
Q Consensus 70 d~G~Y~C~~~~~~----~~~~~~~~l~v~---~~~~~~~-~~~~~~~~~g~~v~l~C~~~~-~~~~~~v~W~~~~~~~~~ 140 (371)
|+|.|.|.+.+.. ........|.|. ..+|.+. ..+...+..|+.++|.|.+.+ .|.+..+.|++++..+..
T Consensus 90 DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~~~~~~~ 169 (253)
T 3liz_H 90 DTAMYYCTRDPAGRAWFAYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGV 169 (253)
T ss_dssp GCEEEEEEECCBTTTBCCEECCCEEEEECSSCCBCCEEEEECC------CCEEEEEEEEEEEBSSCCEEEEGGGTBCTTE
T ss_pred hCEEEEEEEecCCcceeeEECCCEEEEEeccCCCCCeEEEecCCcccCCCCcEEEEEEEeeEeCCCeEEEEEeCCeecce
Confidence 9999999998752 111233456664 1334443 233333467999999999988 454348999998863311
Q ss_pred CCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeee
Q psy14542 141 NSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSV 206 (371)
Q Consensus 141 ~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~ 206 (371)
... ... ..+ | .+... +.|.|.....+| |.|+|.+.|. .+......
T Consensus 170 ~~~-----~~~-~~~-g---------~~~~~--s~L~i~~~~~~d--g~ytC~v~~~-~~~~~~~~ 214 (253)
T 3liz_H 170 HTF-----PAV-LQS-D---------LYTLS--SSVTVPSSTWPS--ETVTCNVAHP-ASSTKVDK 214 (253)
T ss_dssp EEC-----CCE-EET-T---------EEEEE--EEEEEETTSTTT--SCCEEEEEEG-GGTEEEEE
T ss_pred EeC-----Ccc-ccC-C---------eEEEE--EEEEEcHHHCCC--ceEEEEEEEC-CCCcceEE
Confidence 100 000 001 2 22222 578888776654 8999999998 55444433
No 373
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}
Probab=99.64 E-value=1.6e-14 Score=136.39 Aligned_cols=239 Identities=11% Similarity=0.110 Sum_probs=152.1
Q ss_pred cCcEEEEEEecCCCCCCeeEEEeCCEEEeeCCeeEEEEccCCcCC-CeEEEEEEEcCCCCeEEE-EEEEEe--cceeeEe
Q psy14542 26 GHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQRED-AGMYQCHVSADDDSAQMS-AQVILG--GELVEIA 101 (371)
Q Consensus 26 G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~l~i~~~~~~d-~G~Y~C~~~~~~~~~~~~-~~l~v~--~~~~~~~ 101 (371)
+..+.|.| ...+.|.+.+.|.++|..+..-....+.|..+...+ .+.|.|.+.+..|..... +.+.+. ..+|.+.
T Consensus 91 ~g~l~v~c-~~~g~P~p~i~W~k~g~~~~~~~~~~~~i~~~~~~~~~l~~~~va~~~~G~~~~~~v~~~~~~~~~~p~~~ 169 (731)
T 2v5y_A 91 PGLLNVYV-KVNNGPLGNPIWNISGDPTRTWNRAELAISTFWPNFYQVIFEVITSGHQGYLAIDEVKVLGHPCTRTPHFL 169 (731)
T ss_dssp SEEEEEEE-EETTCCCCSEEEEECCCCCSSCEEEEEEECCCTTSCEEEEEEEEECSSCCEEEECCBEEESSCCSSSCEEC
T ss_pred cceEEEEE-ecCCCCccceeEEEeCCcCCceeEEEEEEeecCCCceEEEEEEEecCCceEEEEeeEEeeecccccccccc
Confidence 45899999 456778899999999877653344567777653333 489999776666643211 222211 1455666
Q ss_pred cCCceeeecCCcEEEEEEecCCCCCceEE-Ee--eCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEE
Q psy14542 102 SSNQVVVDVGHRIELHCRVSPKRLSSAKA-WL--KDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELII 178 (371)
Q Consensus 102 ~~~~~~~~~g~~v~l~C~~~~~~~~~~v~-W~--~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i 178 (371)
......+..|++++|.|.+.+.|. +.+. |+ +++..+...... .+. ... ..+.|.|
T Consensus 170 ~~~~~~v~~G~~v~l~C~~~g~P~-p~i~~W~~~~~g~~l~~~~~~--~~~---------------~~~----~~~~l~I 227 (731)
T 2v5y_A 170 RIQNVEVNAGQFATFQCSAIGRTV-AGDRLWLQGIDVRDAPLKEIK--VTS---------------SRR----FIASFNV 227 (731)
T ss_dssp CCCCEEEETTSCEEEEEEEESCCC-TTCEEEEEESSSCCEEEEEEE--ECC---------------SSE----EEEEEEE
T ss_pred cccceEEeCCCcEEEEEEeCCCCC-CceeEEEecCCCccccccceE--Eec---------------ccc----ceEEEEE
Confidence 555555689999999999999888 6776 87 677655432100 000 001 1268999
Q ss_pred EEeecCCccceeEEEeeccccce-eeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeec---CCC-C-
Q psy14542 179 HQVDESDRYRSYQCRGVNKLTGA-SLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQG---NPL-P- 252 (371)
Q Consensus 179 ~~~~~~d~~g~y~C~~~~~~~~~-~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~---~p~-~- 252 (371)
.++...| .|.|+|.|.|. .|. ..... .+.|. .+|.....+... ......+.|.|.... ..+ .
T Consensus 228 ~~~~~~d-~g~Y~c~A~n~-~G~~~s~~~---~l~V~-----~~P~~~~~p~~~--~~~~~~v~l~w~~~~~~g~~~i~~ 295 (731)
T 2v5y_A 228 VNTTKRD-AGKYRCMIRTE-GGVGISNYA---ELVVK-----EPPVPIAPPQLA--SVGATYLWIQLNANSINGDGPIVA 295 (731)
T ss_dssp CSCCTTT-CEEEEEEEEET-TEEEECCCE---EEEEE-----CCCCBSSCCEEE--EECSSCEEEECCCSSBSSCSCCCE
T ss_pred ccccccc-CeEEEEEEECC-CCCcceeeE---EEEEe-----cCCCCCCCccee--ccCCceEEEEeCCcccCCCCccEE
Confidence 9999999 99999999999 665 44444 67776 334332222222 224567888887532 222 2
Q ss_pred -ceEEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEE--cCCCCce
Q psy14542 253 -TIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVAN--NSEGQDK 301 (371)
Q Consensus 253 -~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~--n~~g~~~ 301 (371)
.+.|...+.... .........+.|.++...+...|+|.|. |..|...
T Consensus 296 Y~v~~~~~~~~~~--~~~~~~~~~~~i~~L~p~t~Y~~~V~A~~~N~~G~s~ 345 (731)
T 2v5y_A 296 REVEYCTASGSWN--DRQPVDSTSYKIGHLDPDTEYEISVLLTRPGEGGTGS 345 (731)
T ss_dssp EEEEEEESSSSCE--EEEECCSSEEEECSCCTTCEEEEEEEEECSSTTCSCC
T ss_pred EEEEEEECCCCce--EEeccCcceEEEeCCCCCCEEEEEEEEEecCCCcccc
Confidence 466765433211 0111234678999999988889999999 9998764
No 374
>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens}
Probab=99.64 E-value=1.6e-15 Score=126.13 Aligned_cols=183 Identities=14% Similarity=0.215 Sum_probs=109.0
Q ss_pred eeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEccc--CcCCCeeEEEEEeCCceeEe----ccceEEEE
Q psy14542 106 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRV--QREDAGMYQCHIEDGKYHML----SSGELIIH 179 (371)
Q Consensus 106 ~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~--~~~~~g~y~~~~~~~~~~~~----~~~~l~i~ 179 (371)
..+.+|++++|.|.+.+.+. +.+.|++++... ........... .....+.| .+++.+. .+..|.|.
T Consensus 34 v~v~~G~~v~L~C~~~~~~~-~~v~W~r~~~~~--~~~~~~~~~~~~~~~~~~~~~-----~~R~~~~~~~~~~~sL~I~ 105 (279)
T 2wbj_D 34 VISKSGTSVKIECRSLDFQA-TTMFWYRQFPKQ--SLMLMATSNEGSKATYEQGVE-----KDKFLINHASLTLSTLTVT 105 (279)
T ss_dssp EEEETTSCEEEEEEESSSCE-EEEEEEEECSSS--CCEEEEEEESSSCCCCCSSSC-----SSSEEEEECSSSEEEEEES
T ss_pred EEecCCCeEEEEEEeCCCCC-CeEEEEEeCCCC--CeEEEEEEecCCcceecCCcc-----CCcEEEEeCCCCEEEEEEc
Confidence 44589999999999987665 899999864210 00111111110 00000000 1233332 23579999
Q ss_pred EeecCCccceeEEEeecccc---c--eeeeeeccceeeeecch-hccccceeeeee-eeeeeecCCeEEEEEEeecC-CC
Q psy14542 180 QVDESDRYRSYQCRGVNKLT---G--ASLLSVNRGRLSLTENK-RLLSAAKMFEKH-RILNVKKDESVILPCSAQGN-PL 251 (371)
Q Consensus 180 ~~~~~d~~g~y~C~~~~~~~---~--~~~~~~~~~~l~v~~~~-~~~~p~~~~~~~-~~~~~~~g~~~~l~C~~~~~-p~ 251 (371)
+++.+| +|.|.|.+.+... . ...... .+.|.... ...+|.+..... ... +..|+.+.|.|.+.+. |.
T Consensus 106 ~v~~~D-~G~Y~C~~~~~~~~~~~~~~~~~~~---~l~V~~~~~~~~~P~v~~~~~~~~~-~~~g~~v~L~C~~~g~~P~ 180 (279)
T 2wbj_D 106 SAHPED-SSFYICSARDLTSGANNEQFFGPGT---RLTVTEDLKNVFPPEVAVFEPSEAE-ISHTQKATLVCLATGFYPD 180 (279)
T ss_dssp SCCGGG-CEEEEEEEEETTCBTSCCEEECCCE---EEEEESCGGGCBCCEEEEEECCHHH-HHHHSCCEEEEEEEEEBSS
T ss_pred cCCccC-CEEEEEEEcccccCCccceeeCCCE---EEEEecCCCCCCCCEEEEECCCccc-ccCCCceEEEEEEeeEcCC
Confidence 999999 9999999998310 1 111122 56665321 113455544322 222 4578999999999986 53
Q ss_pred -CceEEEeCCcccccCCce---------------EEecceEEEeccCCCC-CeEEEEEEEcCCCCce
Q psy14542 252 -PTIKWYKQDSPVEESDRI---------------QRIGSSLSISHVEESD-SGVWNCVANNSEGQDK 301 (371)
Q Consensus 252 -~~v~W~~~~~~~~~~~~~---------------~~~~~~l~i~~~~~~d-~G~Y~C~a~n~~g~~~ 301 (371)
+.+.|++++..+..+... ....+.|.|......| .|.|+|+|.|......
T Consensus 181 ~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~~~~YtC~v~n~~~~~~ 247 (279)
T 2wbj_D 181 HVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLSEN 247 (279)
T ss_dssp CEEEEEEETTEECCTTEEECSSCEESSTTSTTCCEEEEEEEECCSTTTTCTTCEEEEEEEECCBCTT
T ss_pred CcEEEEEECCEECCCCcccccccccccccCCCCcEEEEEEEEEChHHhccCCCEEEEEEEeCCCCCC
Confidence 689999999877543211 0112347777776654 7789999999876554
No 375
>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O
Probab=99.64 E-value=1.3e-15 Score=106.37 Aligned_cols=84 Identities=27% Similarity=0.348 Sum_probs=74.1
Q ss_pred ccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC---------CeeEEEEccCCcCCCeEEEEEEE
Q psy14542 9 SSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN---------SDEVLVLDRVQREDAGMYQCHVS 79 (371)
Q Consensus 9 ~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~---------~~~~l~i~~~~~~d~G~Y~C~~~ 79 (371)
.+|.|...|.. +.+.+|+.+.|.|.+ .+.|.+.+.|+|||..+... ...+|.|.+++.+|+|.|+|.|.
T Consensus 12 ~pP~f~~~p~~-~~v~~G~~~~l~C~~-~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~ 89 (107)
T 3knb_B 12 SPPCFLRFPRP-VRVVSGAEAELKCVV-LGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAGVYVCRAR 89 (107)
T ss_dssp EEEEEEECCCC-EEEETTSCEEEEEEE-EEESCCEEEEEETTEECCCCSSEECCEETTEEEEEESSCCGGGCEEEEEEEE
T ss_pred CCCEEEeCCCc-EEEeCCCcEEEEEEE-EEecCCEEEEEECcccccceeeEEEeecCceEEEEEecCChhhCEEEEEEEE
Confidence 46788888887 999999999999954 57888999999999988655 45689999999999999999999
Q ss_pred cCCCCeEEEEEEEEe
Q psy14542 80 ADDDSAQMSAQVILG 94 (371)
Q Consensus 80 ~~~~~~~~~~~l~v~ 94 (371)
|..|.....+.|.|.
T Consensus 90 N~~G~~~~~~~l~V~ 104 (107)
T 3knb_B 90 NAAGEAYAAAAVTVL 104 (107)
T ss_dssp ETTEEEEEEEEEEEE
T ss_pred ECCCEEEEEEEEEEE
Confidence 999988888999887
No 376
>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus receptor, cell adhesion, integrin ligand, glycopr LFA-1 ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A 1d3e_I 1d3i_I 3tcx_A
Probab=99.64 E-value=2e-14 Score=109.69 Aligned_cols=157 Identities=17% Similarity=0.206 Sum_probs=108.0
Q ss_pred EEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEe--CCEEE-eeC-CeeEEEEccCCcCCCeEEEEEEEcCCCCeEEE
Q psy14542 13 IEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLK--DGLVL-RRN-SDEVLVLDRVQREDAGMYQCHVSADDDSAQMS 88 (371)
Q Consensus 13 ~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~--~~~~~-~~~-~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~ 88 (371)
+.+.|+. ..|.+|+++.|.|.+....| ..+.|.- ++..+ ... ....|.|.+++. | |.|.|.+..........
T Consensus 2 v~v~P~~-~~V~~G~Sv~l~Cs~~c~~p-~~~~~~t~l~~~~~~~~~~~~~~l~l~~vs~-~-g~y~C~~~c~~~~~~~~ 77 (185)
T 1iam_A 2 TSVSPSK-VILPRGGSVLVTCSTSCDQP-KLLGIETPLPKKELLLPGNNRKVYELSNVQE-D-SQPMCYSNCPDGQSTAK 77 (185)
T ss_dssp EEEESSE-EEEETTEEEEEEEEECSSSC-SEEEEECSSCEEEECSSSSSEEEEEEEEECS-C-BCCEEEEECSSCEEEEE
T ss_pred eEEECCC-cEEeCCCCEEEEEEccCCCC-ccceEEeeCCCccEeccCCceeEEEEEecCc-C-CEEEEEEECCCCceEEE
Confidence 6678887 88999999999997653332 2477753 22333 222 446799999983 4 99999998776667888
Q ss_pred EEEEEecceeeEecCCce-eeecCCcEEEEEEecCCCCCc--eEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeC
Q psy14542 89 AQVILGGELVEIASSNQV-VVDVGHRIELHCRVSPKRLSS--AKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIED 165 (371)
Q Consensus 89 ~~l~v~~~~~~~~~~~~~-~~~~g~~v~l~C~~~~~~~~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~ 165 (371)
+.|.|+..|..+...+.. .+.+|+.++|.|.+.+..+.. .|+|++++..+..... . ...+
T Consensus 78 ~~l~V~~~P~~v~i~~~~~~~~~G~~~tL~C~v~g~~P~~~l~i~w~kg~~~l~~~~~--------~-~~~~-------- 140 (185)
T 1iam_A 78 TFLTVYWTPERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPA--------V-GEPA-------- 140 (185)
T ss_dssp CEEEEEBCCSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEEC--------C-TTTE--------
T ss_pred EEEEEeCCCCCCEEccCCccccCCCcEEEEEEcCCccCCCCcEEEEEeCCEEcccccC--------C-Cccc--------
Confidence 999998555555555443 468999999999998865533 5899999998865310 0 0000
Q ss_pred CceeEeccceEEEEEeecCCccceeEEEeeccc
Q psy14542 166 GKYHMLSSGELIIHQVDESDRYRSYQCRGVNKL 198 (371)
Q Consensus 166 ~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~ 198 (371)
+..|++. +.++|+...|+|.|.+..
T Consensus 141 -------~~tl~~~-~~reD~g~~~sC~A~~~l 165 (185)
T 1iam_A 141 -------EVTTTVL-VRRDHHGAQFSCRTELDL 165 (185)
T ss_dssp -------EEEEEEE-CCSSCSSCEEEEEEEEEC
T ss_pred -------cEEEEEe-ceeccCCCeEEEEEEecC
Confidence 1245555 444553679999999873
No 377
>3u2s_H PG9 heavy chain; greek KEY, immunoglobulin, immune recognition, immune system; HET: PCA TYS BU3 NAG BMA MAN; 1.80A {Homo sapiens} PDB: 3u4e_H* 3u36_H 3mug_B* 3lrs_H* 3mme_H* 2qsc_H*
Probab=99.63 E-value=7.7e-15 Score=119.51 Aligned_cols=196 Identities=12% Similarity=0.138 Sum_probs=109.0
Q ss_pred CceeeecCCcEEEEEEecCCC-CCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEec-----cceEE
Q psy14542 104 NQVVVDVGHRIELHCRVSPKR-LSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLS-----SGELI 177 (371)
Q Consensus 104 ~~~~~~~g~~v~l~C~~~~~~-~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~-----~~~l~ 177 (371)
....+.+|++++|.|.+.+.. ....+.|++.... ........+..... ..+......+++.+.. +..|.
T Consensus 7 ~~v~v~~G~~v~L~C~~s~~~~~~~~v~W~rq~~~--~~~~~l~~~~~~~~---~~~~~~~~~~R~~~~~~~~~~~~sL~ 81 (248)
T 3u2s_H 7 GGGVVQPGSSLRLSCAASGFDFSRQGMHWVRQAPG--QGLEWVAFIKYDGS---EKYHADSVWGRLSISRDNSKDTLYLQ 81 (248)
T ss_dssp CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTT--SCEEEEEEECTTSS---CEEECTTTTTTEEEEEEGGGTEEEEE
T ss_pred CCEEEeCCCCEEEEEEeccccCCccEEEEEEECCC--CCcEEEEEEecCCC---ceecCcccCCcEEEEecCCCCEEEEE
Confidence 344558999999999997532 2268999984310 00011111111000 0000000012333322 24699
Q ss_pred EEEeecCCccceeEEEeeccccc--------------e-----eeeeeccceeeeecchhccccceeeeeeeeeeeecCC
Q psy14542 178 IHQVDESDRYRSYQCRGVNKLTG--------------A-----SLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDE 238 (371)
Q Consensus 178 i~~~~~~d~~g~y~C~~~~~~~~--------------~-----~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~ 238 (371)
|.+++.+| +|.|.|.+.+. .+ . .........+.|.... ..+|.+........ +..|+
T Consensus 82 I~~v~~~D-sG~Y~C~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~V~~~~-~~~P~v~~~~~~~~-~~~g~ 157 (248)
T 3u2s_H 82 MNSLRVED-TATYFCVREAG-GPDYRNGYNYYDFYDGYYNYHYMDVWGKGTTVTVSSAS-TKGPSVFPLAPSSK-STSGG 157 (248)
T ss_dssp ECSCCGGG-CEEEEEEEEEE-ECEEETTEEEECGGGCCEEEEEEEEECCCEEEEECSCC-CBCCEEEEECCC-------C
T ss_pred ECCCCHHH-CEEEEEEEeCC-CCccccccccccccccccccccceeeCCCEEEEEcccC-CCCCEEEEeCCCcc-ccCCC
Confidence 99999999 99999999863 10 0 1111112255554221 13455543333333 56799
Q ss_pred eEEEEEEeec-CC-CCceEEEeCCcccccC--------CceEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEE
Q psy14542 239 SVILPCSAQG-NP-LPTIKWYKQDSPVEES--------DRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQY 308 (371)
Q Consensus 239 ~~~l~C~~~~-~p-~~~v~W~~~~~~~~~~--------~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 308 (371)
.++|.|.+.+ .| .+.+.|++++..+... +......+.|.|.....+| |.|+|.|.|..+.......|.+
T Consensus 158 ~~~L~C~~~~~~P~~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~l~~ 236 (248)
T 3u2s_H 158 TAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEP 236 (248)
T ss_dssp EEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGBTT-BCCEEEEEEGGGTEEEEEECCC
T ss_pred cEEEEEEEeeEECCCeEEEEeECCccCceeecCceECCCCCEEEEEEEEEChhhcCC-CeEEEEEEECCCCcceEEEEcc
Confidence 9999999987 45 3569999988643211 1111223468888888888 9999999999887766665554
Q ss_pred e
Q psy14542 309 A 309 (371)
Q Consensus 309 ~ 309 (371)
.
T Consensus 237 ~ 237 (248)
T 3u2s_H 237 K 237 (248)
T ss_dssp -
T ss_pred C
Confidence 4
No 378
>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Probab=99.62 E-value=4.1e-15 Score=120.93 Aligned_cols=168 Identities=11% Similarity=0.168 Sum_probs=104.3
Q ss_pred EEEeCCCcEEEeccCcEEEEEEecCC-CCCCeeEEEeCC-----EEEe---------------eC----------CeeEE
Q psy14542 13 IEMSPSGQVVVDVGHRIELHCRVSPK-RLSSAKAWLKDG-----LVLR---------------RN----------SDEVL 61 (371)
Q Consensus 13 ~~~~p~~~~~~~~G~~v~l~C~~~~~-~~~~~~~W~~~~-----~~~~---------------~~----------~~~~l 61 (371)
+...|.. +.+.+|++++|.|.+... .+...+.|+|.. ..+. .. ...+|
T Consensus 4 v~q~p~~-v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L 82 (242)
T 1hxm_B 4 LEQPQIS-STKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTL 82 (242)
T ss_dssp EECCCSE-EEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEE
T ss_pred cCcCCce-EEecCCCcEEEEEEeCCccccCceEEEEEeCCCCCcEEEEEEecCCceecCCcccCCeEEEEecCCCcEEEE
Confidence 4455555 889999999999976543 256789999832 1111 00 25689
Q ss_pred EEccCCcCCCeEEEEEEEcCCC-C------eEEEEEEEEecc------eeeEecC-C-ceeeecCCcEEEEEEecCC-CC
Q psy14542 62 VLDRVQREDAGMYQCHVSADDD-S------AQMSAQVILGGE------LVEIASS-N-QVVVDVGHRIELHCRVSPK-RL 125 (371)
Q Consensus 62 ~i~~~~~~d~G~Y~C~~~~~~~-~------~~~~~~l~v~~~------~~~~~~~-~-~~~~~~g~~v~l~C~~~~~-~~ 125 (371)
.|.+++.+|+|.|.|.+.+... . ......|.|... +|.+... + ...+..|+.++|.|.+.+. |.
T Consensus 83 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~p~~~v~~p~~~~~~~g~~v~L~C~~~g~~P~ 162 (242)
T 1hxm_B 83 TIHNVEKQDIATYYCALWEAQQELGKKIKVFGPGTKLIITDKQLDADVSPKPTIFLPSIAETKLQKAGTYLCLLEKFFPD 162 (242)
T ss_dssp EECSCCGGGCEEEEEEEEEECSSTTCEEEEECCCEEEEEESSCCCSCCSCBCCCCCCCGGGGGSSSCEEEEEEEEEESSC
T ss_pred EECCCCcccCEEEEEeeecCCccccccceeEcCcEEEEEcccccCCCcCCCceEECCChhhcccCCCceEEEEEeeEECC
Confidence 9999999999999999987531 1 112356777631 1222211 1 1223569999999999876 43
Q ss_pred CceEEEeeCCE-EeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeecccccee
Q psy14542 126 SSAKAWLKDGL-VLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGAS 202 (371)
Q Consensus 126 ~~~v~W~~~~~-~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~ 202 (371)
++.+.|++++. .+...... ... .. ++.+... +.|.|..... .|.|+|.+.|. .+..
T Consensus 163 ~~~v~W~~~~~~~l~~~~~~-----~~~-~~---------~~~~~~~--s~L~i~~~~~---~g~y~C~v~n~-~~~~ 219 (242)
T 1hxm_B 163 VIKIHWEEKKSNTILGSQEG-----NTM-KT---------NDTYMKF--SWLTVPEKSL---DKEHRCIVRHE-NNKN 219 (242)
T ss_dssp CEEEEEEESSSCCCCCCEEC-----CCE-EC---------SSSEEEE--EEEEECTGGG---GSCEEEEEEET-TSGG
T ss_pred CeEEEEEcCCCEeecCcccc-----cee-cC---------CCcEEEE--EEEEEccccC---CCEEEEEEEeC-CCCC
Confidence 37999999886 44322100 000 01 2233222 4677765542 38999999998 4433
No 379
>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A
Probab=99.62 E-value=1.9e-15 Score=139.15 Aligned_cols=172 Identities=15% Similarity=0.297 Sum_probs=112.7
Q ss_pred eeeecCCcEEEEEEe-cCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecC
Q psy14542 106 VVVDVGHRIELHCRV-SPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDES 184 (371)
Q Consensus 106 ~~~~~g~~v~l~C~~-~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~ 184 (371)
..+.+|++++|.|.+ .+.+. +.++|++++..+.... . ........| .++..+..+++|.|.+++.+
T Consensus 376 ~~~~~G~~v~L~C~~~~~~~~-~~v~W~k~~~~~~~~~-----~--~~~~~~~~~-----~~r~~~~~~~~L~i~~v~~~ 442 (581)
T 3o3u_N 376 ITARIGEPLVLKCKGAPKKPP-QRLEWKLNTGRTEAWK-----V--LSPQGGGPW-----DSVARVLPNGSLFLPAVGIQ 442 (581)
T ss_dssp EEEETTSCEEECCTTCCSSSS-CEEEEEEEETTSSSCE-----E--CCSCCSSGG-----GGTSEECTTSCEEESSCCGG
T ss_pred cceecCCcEEEeeeecCCCCC-ceEEEEEcCCeeEEEE-----e--cccCCCCCc-----CCcEEEcCCceEEEeccccc
Confidence 344899999999999 56565 8999999765221110 0 000000000 23455556678999999999
Q ss_pred CccceeEEEeecccccee-eeeeccceeeeecchhccccceeeeeeeeeeeecCCe-EEEEEEeec-CCCCceEEEeCCc
Q psy14542 185 DRYRSYQCRGVNKLTGAS-LLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDES-VILPCSAQG-NPLPTIKWYKQDS 261 (371)
Q Consensus 185 d~~g~y~C~~~~~~~~~~-~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~-~~l~C~~~~-~p~~~v~W~~~~~ 261 (371)
| +|.|+|.+.+. .+.. .... .|.|...+ ..|.+..... . +..++. +.|.|.+.+ +|.++++|+++|.
T Consensus 443 D-~G~Y~C~~~n~-~~~~~~~~~---~l~V~~~~--~~p~i~~~~~--~-~~~~~~~~~l~C~~~~~~P~~~i~W~~~g~ 512 (581)
T 3o3u_N 443 D-EGIFRCQAMNR-NGKETKSNY---RVRVYQIP--GKPEIVDSAS--E-LTAGVPNKVGTCVSEGSYPAGTLSWHLDGK 512 (581)
T ss_dssp G-CEEEEEEEECT-TSCEEEEEE---EEEEEBCC--CCCEEESCCS--E-ECTTSCEEEEEEEEEEEBSCCEEEEEETTE
T ss_pred c-CeEEEEEEEcC-CCceeEEEE---EEEEEcCC--CCCEEEcCCc--c-cccCCceeEEEEECCCCCCCCeEEEEECCE
Confidence 9 99999999998 5544 4455 77776321 2333332222 2 444544 567999988 6999999999998
Q ss_pred ccccCC-ceE--------------EecceEEEeccC-CCCCeEEEEEEEcCCCCc
Q psy14542 262 PVEESD-RIQ--------------RIGSSLSISHVE-ESDSGVWNCVANNSEGQD 300 (371)
Q Consensus 262 ~~~~~~-~~~--------------~~~~~l~i~~~~-~~d~G~Y~C~a~n~~g~~ 300 (371)
.+.... ++. ...++|.|..+. .++.|.|+|+|+|..+..
T Consensus 513 ~l~~~~~~~~~~~~~~~~~~~g~y~~~s~L~i~~~~~~d~~~~y~C~~~n~~~~~ 567 (581)
T 3o3u_N 513 PLVPNEKGVSVKEQTRRHPETGLFTLQSELMVTPARGGDPRPTFSCSFSPGLPRH 567 (581)
T ss_dssp ECCTTSTTEEEEEEEEECTTTCCEEEEEEEEECCCTTSCSCCCEEEEEECSSCSS
T ss_pred ECCCCCCeEEEEeeeEEcCCCceEEEEEEEEEEeccccCCCceEEEEEeccCCCC
Confidence 876432 211 112468999888 555889999999987543
No 380
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=3.3e-15 Score=103.53 Aligned_cols=92 Identities=24% Similarity=0.450 Sum_probs=77.7
Q ss_pred cccceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEeCCccccc-CCceE-EecceEEEeccCCCCCeEEEEEEEcCC
Q psy14542 220 LSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEE-SDRIQ-RIGSSLSISHVEESDSGVWNCVANNSE 297 (371)
Q Consensus 220 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~-~~~~~-~~~~~l~i~~~~~~d~G~Y~C~a~n~~ 297 (371)
.+|.+...+.... +..|+.+.|.|.+.|.|.+.+.|++++..+.. ..++. ..++.|.|.++..+|+|.|+|.|.|..
T Consensus 7 ~~P~i~~~p~~~~-v~~G~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~ 85 (100)
T 2edj_A 7 GPPIILQGPANQT-LAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQGTLQIKNLRISDTGTYTCVATSSS 85 (100)
T ss_dssp SSCEEEECCCCEE-EESSSEEEECCEEECSSCCEEEEEESSSEESSSCSSCEECTTCCEEEESCCTTTCCEEEEEEECSS
T ss_pred CCCEEEeCcCCEE-EcCCCcEEEEEEEEEcCCCEEEEEECCEECCCCCCCEEEcCCCEEEEccCCcccCEEEEEEEEcCC
Confidence 5667766666666 89999999999999999999999999988763 33333 345689999999999999999999999
Q ss_pred CCceeEEEEEEecCc
Q psy14542 298 GQDKMQLFIQYAHGK 312 (371)
Q Consensus 298 g~~~~~~~l~v~~~p 312 (371)
|.....+.|.|.++|
T Consensus 86 g~~~~~~~l~V~~~~ 100 (100)
T 2edj_A 86 GETSWSAVLDVTESG 100 (100)
T ss_dssp CCCBCCEEEEEESCC
T ss_pred CCEEEEEEEEEecCC
Confidence 999999999998764
No 381
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0
Probab=99.62 E-value=1.5e-15 Score=106.96 Aligned_cols=93 Identities=25% Similarity=0.430 Sum_probs=70.3
Q ss_pred cccceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccCCceEE--ecceEEEeccCCCCCeEEEEEEEcCC
Q psy14542 220 LSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQR--IGSSLSISHVEESDSGVWNCVANNSE 297 (371)
Q Consensus 220 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~--~~~~l~i~~~~~~d~G~Y~C~a~n~~ 297 (371)
.+|.+...+.... +..|+.+.|.|.+.|.|.+.+.|++++..+....++.. .++.|.|.++..+|+|.|+|.|.|..
T Consensus 9 ~~P~~~~~~~~~~-v~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~ 87 (108)
T 3kvq_A 9 VAPTITGNLENQT-TSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQACSVL 87 (108)
T ss_dssp --CCCBSCCCCEE-EETTCCEEEECBCC----CCEEEEESSSBCCCBTTEEEETTTTEEEECSCCGGGCEEEEEEEC---
T ss_pred CCCceecCCCCeE-EeCCCeEEEEEECcCcCCCeEEEEECCeEcccCCCeEEeCCCcEEEEeecCcccCEEEEEEEEeCC
Confidence 6777777776666 99999999999999999999999999998877665553 34689999999999999999999999
Q ss_pred CCceeEEEEEEecCcc
Q psy14542 298 GQDKMQLFIQYAHGKY 313 (371)
Q Consensus 298 g~~~~~~~l~v~~~p~ 313 (371)
|.....+.|.|..+|.
T Consensus 88 g~~~~~~~l~V~~~~~ 103 (108)
T 3kvq_A 88 GCAKVEAFFIIEGAQE 103 (108)
T ss_dssp -CEEEEEEEEEEC---
T ss_pred CceEEEEEEEEeCCCc
Confidence 9999999999988776
No 382
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4
Probab=99.62 E-value=2.2e-15 Score=104.23 Aligned_cols=90 Identities=23% Similarity=0.288 Sum_probs=76.7
Q ss_pred cccceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccCCceEE---ec--ceEEEeccCCCCCeEEEEEEE
Q psy14542 220 LSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQR---IG--SSLSISHVEESDSGVWNCVAN 294 (371)
Q Consensus 220 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~---~~--~~l~i~~~~~~d~G~Y~C~a~ 294 (371)
.+|.+...+.... +..|+.+.|.|.+.|.|.+.+.|++++..+....++.. .+ ..|.|.++..+|+|.|+|.|.
T Consensus 4 ~~P~~~~~~~~~~-v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~ 82 (99)
T 1g1c_A 4 EAPKIFERIQSQT-VGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAI 82 (99)
T ss_dssp EEEEEEECCCCEE-EETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEE
T ss_pred CCCceEecCcceE-EcCCCcEEEEEEEEEeCCCEEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCCcCCCEEEEEEEE
Confidence 4566666666666 99999999999999999999999999998887766542 22 379999999999999999999
Q ss_pred cCCCCceeEEEEEEec
Q psy14542 295 NSEGQDKMQLFIQYAH 310 (371)
Q Consensus 295 n~~g~~~~~~~l~v~~ 310 (371)
|..|.....+.|.|..
T Consensus 83 N~~g~~~~~~~l~V~~ 98 (99)
T 1g1c_A 83 NIAGETSSHAFLLVQA 98 (99)
T ss_dssp ETTEEEEEEEEEEEEC
T ss_pred ECCCcEEEEEEEEEec
Confidence 9999999999888864
No 383
>3iu4_H CHP3 FAB heavy chain; antibody, ganglioside, idiotype, immune system; 1.75A {Mus musculus} PDB: 1ibg_H* 3iy6_B
Probab=99.62 E-value=6.3e-15 Score=121.10 Aligned_cols=193 Identities=9% Similarity=0.110 Sum_probs=106.1
Q ss_pred CceeeecCCcEEEEEEecCCC-CCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEec-----cceEE
Q psy14542 104 NQVVVDVGHRIELHCRVSPKR-LSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLS-----SGELI 177 (371)
Q Consensus 104 ~~~~~~~g~~v~l~C~~~~~~-~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~-----~~~l~ 177 (371)
+...+.+|++++|.|.+.+.. ....+.|++.... ......+.+.... ..+......+++.+.. +..|.
T Consensus 8 ~~v~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~--~~~~~l~~~~~~~----~~~~~~~~~~R~~~~~~~~~~~~sL~ 81 (263)
T 3iu4_H 8 GPGLVAPSQSLSITCTVSGFSLSRYSVHWVRQPPG--KGLEWLGMIWGGG----STDYNSALKSRLSISKDNSKSQVFLK 81 (263)
T ss_dssp CCSEECTTSCEEEEEEEESSCGGGSCEEEEEECTT--SCCEEEEEECTTS----CEEECGGGTTCEEEEEEGGGTEEEEE
T ss_pred CCEEEcCCCCEEEEEEeccccCCceEEEEEEECCC--CCcEEEEEEeCCC----cEeeCcccCCCEEEEecCCCCEEEEE
Confidence 344568999999999997543 2268999974310 0111112221100 0000000022333322 23599
Q ss_pred EEEeecCCccceeEEEeecccc----ceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecC-CC-
Q psy14542 178 IHQVDESDRYRSYQCRGVNKLT----GASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGN-PL- 251 (371)
Q Consensus 178 i~~~~~~d~~g~y~C~~~~~~~----~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~- 251 (371)
|.+++.+| +|.|.|.+.+... +..........+.|..... .+|.+........ +..|+.++|.|.+.+. |.
T Consensus 82 I~~v~~~D-sG~Y~C~~~~~~~~~~~~~~~~~~~~t~l~V~~~~~-~~P~v~~~~~~~~-~~~g~~~~L~C~~~~~~P~~ 158 (263)
T 3iu4_H 82 MNSLQTDD-TAMYYCARSGVREGRAQAWFAYWGQGTLVTVSAAST-KGPSVFPLAPSSK-GSTSGTAALGCLVKDYFPEP 158 (263)
T ss_dssp ECSCCGGG-CEEEEEEEEECC---CEEEEEEECCCEEEEECSSCC-BCCEEEEECCCCC-C----EEEEEEEEEEEBSSC
T ss_pred ECCCCHHH-CEEEEEEEEeCCCCccccccceeCCceEEEEecccC-CCCEEEEccCccc-cccCCcEEEEEEEEeEeCCc
Confidence 99999999 9999999986510 1011111112555542211 4455543333333 5689999999999874 43
Q ss_pred CceEEEeCCcccccC----------CceEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEE
Q psy14542 252 PTIKWYKQDSPVEES----------DRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQY 308 (371)
Q Consensus 252 ~~v~W~~~~~~~~~~----------~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 308 (371)
+.++| ++..+... +......+.|.|.....+| |.|+|.|.|..+.......|.+
T Consensus 159 ~~v~W--~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~~~~ 222 (263)
T 3iu4_H 159 VTVSW--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEP 222 (263)
T ss_dssp CEEEE--GGGTBCTTEEECCCEECTTSCEEEEEEEEEETTHHHH-CCCEEEEEEGGGTEEEEEECCC
T ss_pred eEEEE--CCcccCCceeecCceECCCCCEEEEEEEEECHhHcCC-CEEEEEEEECCCCcceeEEEcC
Confidence 67999 54433221 1111122468888888888 9999999999887655555543
No 384
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}
Probab=99.62 E-value=2.9e-15 Score=102.58 Aligned_cols=87 Identities=21% Similarity=0.424 Sum_probs=76.6
Q ss_pred cccceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCCC
Q psy14542 220 LSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQ 299 (371)
Q Consensus 220 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~ 299 (371)
.+|.+...+.... +..|+.+.|.|.+.+.| +.+.|++++..+....++...++.|.|.++..+|+|.|+|.|.|..|.
T Consensus 8 ~pp~~~~~~~~~~-v~~G~~v~l~C~~~g~p-p~i~W~k~g~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~ 85 (95)
T 2ckn_A 8 QPWGVPVEVESLL-VHPGDLLQLRCRLRDDV-QSINWLRDGVQLVESNRTRITGEEVEVRDSIPADSGLYACVTSSPSGS 85 (95)
T ss_dssp CSCCBTTBBCCEE-ECTTSCEEEECCEESSC-CEEEEEBTTBCCCCCSSEEECSSEEEESSCCGGGSEEEEEEEEETTEE
T ss_pred CCCEEEcCcceEE-EcCCCeEEEEEECCCCC-CceEEEECCEecCCCCCEEEeCCEEEECCCChHHCEEEEEEeccCCCc
Confidence 4556666666666 99999999999999987 799999999999888888877889999999999999999999999999
Q ss_pred ceeEEEEEE
Q psy14542 300 DKMQLFIQY 308 (371)
Q Consensus 300 ~~~~~~l~v 308 (371)
....+.|.|
T Consensus 86 ~~~~~~l~V 94 (95)
T 2ckn_A 86 DTTYFSVNV 94 (95)
T ss_dssp EEEEEEEEE
T ss_pred EEEEEEEEE
Confidence 888888876
No 385
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}
Probab=99.61 E-value=2.9e-15 Score=104.44 Aligned_cols=92 Identities=20% Similarity=0.321 Sum_probs=78.5
Q ss_pred cccceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccCCceEEec----ceEEEeccCCCCCeEEEEEEEc
Q psy14542 220 LSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIG----SSLSISHVEESDSGVWNCVANN 295 (371)
Q Consensus 220 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~----~~l~i~~~~~~d~G~Y~C~a~n 295 (371)
.+|.+...+.... +..|+.+.|.|.+.|.|.|.+.|++++..+....++.... ..|.|.++..+|+|.|+|.|.|
T Consensus 7 ~~P~~~~~~~~~~-v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N 85 (103)
T 3qp3_A 7 HAPRITLRMRSHR-VPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVLTLEILDCHTDDSGTYRAVCTN 85 (103)
T ss_dssp EEEEEEECCCCEE-EETTCCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEETTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred CCCEEEeCCcceE-EeCCCeEEEEEEEEecCCCEEEEEECCEECCCCCCEEEEECCCEEEEEEcCCCcccCEEEEEEEEe
Confidence 5667766666666 9999999999999999999999999999988777665322 3699999999999999999999
Q ss_pred CCCCceeEEEEEEecCc
Q psy14542 296 SEGQDKMQLFIQYAHGK 312 (371)
Q Consensus 296 ~~g~~~~~~~l~v~~~p 312 (371)
..|.....+.|.|...+
T Consensus 86 ~~G~~~~~~~l~V~~~~ 102 (103)
T 3qp3_A 86 YKGEASDYATLDVTGGD 102 (103)
T ss_dssp TTEEEEEEEEEEEECC-
T ss_pred CCCcEEEEEEEEEECCC
Confidence 99999999999887653
No 386
>1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*
Probab=99.61 E-value=4e-14 Score=112.85 Aligned_cols=120 Identities=16% Similarity=0.245 Sum_probs=81.7
Q ss_pred CCCcEEEeccCcEEEEEEecCCC-CCCeeEEEeCC--EE---Ee--------------eC----------CeeEEEEccC
Q psy14542 17 PSGQVVVDVGHRIELHCRVSPKR-LSSAKAWLKDG--LV---LR--------------RN----------SDEVLVLDRV 66 (371)
Q Consensus 17 p~~~~~~~~G~~v~l~C~~~~~~-~~~~~~W~~~~--~~---~~--------------~~----------~~~~l~i~~~ 66 (371)
|.. +.+.+|++++|.|.+.... +...+.|+|+. .. +. .. ...+|.|.++
T Consensus 7 p~~-~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v 85 (215)
T 1c5d_H 7 SGP-GLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSL 85 (215)
T ss_dssp ECC-CEECTTCCEEEEEEECSSCTTSCCEEEEEECTTSCCEEEEEECTTCCEECCTTTGGGEEEEEETTTTEEEEEESSC
T ss_pred CCC-eeecCCCcEEEEEEECCCcCCCCeEEEEEECCCCCcEEEEEEcCCCCcEECCcccCcEEEEeeCCCceEEEEECCC
Confidence 444 6899999999999765432 35779999842 11 10 00 2458999999
Q ss_pred CcCCCeEEEEEEEcCCCC---eEEEEEEEEec---ceeeEec-CCceeeecCCcEEEEEEecCC-CCCceEEEeeCCEE
Q psy14542 67 QREDAGMYQCHVSADDDS---AQMSAQVILGG---ELVEIAS-SNQVVVDVGHRIELHCRVSPK-RLSSAKAWLKDGLV 137 (371)
Q Consensus 67 ~~~d~G~Y~C~~~~~~~~---~~~~~~l~v~~---~~~~~~~-~~~~~~~~g~~v~l~C~~~~~-~~~~~v~W~~~~~~ 137 (371)
+.+|+|.|.|.+.+..+. ......|.|.. .+|.+.. .+...+..|+.++|.|.+.+. |.+..+.|++++..
T Consensus 86 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~ 164 (215)
T 1c5d_H 86 QTEDTAIYFCTREDGWNYFDYWGPGTMVTVSSAQTTAPSVYPLAPGCGDTTSSTVTLGCLVKGYFPEPVTVTWNSGALS 164 (215)
T ss_dssp CGGGCEEEEEEECCSSSCSCCBCCCEEEEECSSCCBCCCEEEECCCSSCCCCSSEEEEEEEEEEBSSCCEEEEGGGTTC
T ss_pred CcccCEEEEEEEecCCcccceEcCCEEEEecCCCCCCCeEEeccCChhhccCCcEEEEEEEeeeEcCCcEEEEccCCcc
Confidence 999999999999876421 12335677763 2233332 223334689999999999887 55249999998764
No 387
>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Probab=99.61 E-value=2e-15 Score=104.15 Aligned_cols=83 Identities=19% Similarity=0.385 Sum_probs=72.0
Q ss_pred cceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC-----------CeeEEEEccCCcCCCeEEEEEE
Q psy14542 10 SLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN-----------SDEVLVLDRVQREDAGMYQCHV 78 (371)
Q Consensus 10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~-----------~~~~l~i~~~~~~d~G~Y~C~~ 78 (371)
+|+|...|.. +.+.+|+.+.|.|.+ .+.|.+.+.|+|+|..+... ...+|.|.+++.+|+|.|+|.|
T Consensus 5 PP~i~~~p~~-~~v~~G~~~~l~C~~-~g~P~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a 82 (100)
T 3knb_A 5 PPKIEALPSD-ISIDEGKVLTVACAF-TGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTLSL 82 (100)
T ss_dssp EEEECCCCSE-EEEETTSEEEEEEEE-EEESCCEEEEEETTEECCTTGGGTEEEEECSSEEEEEESSCCGGGCEEEEEEE
T ss_pred CCEEEeCCCc-EEEeCCCeEEEEEEE-EEecCCEEEEEECceEeeeeccceeeeecccceEEEEEcCCCccCCEEEEEEE
Confidence 5677777777 899999999999954 57889999999999987643 3468999999999999999999
Q ss_pred EcCCCCeEEEEEEEEe
Q psy14542 79 SADDDSAQMSAQVILG 94 (371)
Q Consensus 79 ~~~~~~~~~~~~l~v~ 94 (371)
.|..|.....+.|.|.
T Consensus 83 ~N~~G~~~~~~~l~V~ 98 (100)
T 3knb_A 83 GNEFGSDSATVNIHIR 98 (100)
T ss_dssp EETTEEEEEEEEEEEE
T ss_pred EECCCEEEEEEEEEEE
Confidence 9999988888888886
No 388
>3tv3_H PGT128 heavy chain, IG gamma-1 chain C region; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_H* 3twc_H* 3tje_H* 3thm_H* 4fqq_H 2xzc_H* 2xza_H* 3b2u_H* 3b2v_H* 3mly_H 3mlz_H 4fq2_H 2ykl_H* 3tnm_H 4fqc_H* 4fq1_H* 2yk1_H* 3mlx_H 2jix_D 2vxq_H ...
Probab=99.61 E-value=1.8e-14 Score=116.83 Aligned_cols=164 Identities=16% Similarity=0.231 Sum_probs=99.1
Q ss_pred EEEeccCcEEEEEEecCCCC---CCeeEEEeC--C---EEE---e------e---------------------CCeeEEE
Q psy14542 21 VVVDVGHRIELHCRVSPKRL---SSAKAWLKD--G---LVL---R------R---------------------NSDEVLV 62 (371)
Q Consensus 21 ~~~~~G~~v~l~C~~~~~~~---~~~~~W~~~--~---~~~---~------~---------------------~~~~~l~ 62 (371)
+.+.+|++++|.|.+..... ...+.|||. + ..+ . . ....+|.
T Consensus 10 ~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~ 89 (239)
T 3tv3_H 10 TLVEASETLSLTCAVSGDSTAACNSFWGWVRQPPGKGLEWVGSLSHCASYWNRGWTYHNPSLKSRLTLALDTPKNLVFLK 89 (239)
T ss_dssp SEECTTSCEEEEEEEESSCTTSSSCEEEEEEECTTSCCEEEEEEECCCCTTSSCEEEECTTTGGGEEEEEEGGGTEEEEE
T ss_pred EEEcCCCCEEEEEEEcCCcccccceEEEEEEECCCCCcEEEEEEecccccccCCceecCccccCCEEEEEECCCCEEEEE
Confidence 68999999999997654321 347999982 1 111 1 0 0345699
Q ss_pred EccCCcCCCeEEEEEEEcCCC-----------C--eEEEEEEEEe---cceeeEe-cCCceeeecCCcEEEEEEecCC-C
Q psy14542 63 LDRVQREDAGMYQCHVSADDD-----------S--AQMSAQVILG---GELVEIA-SSNQVVVDVGHRIELHCRVSPK-R 124 (371)
Q Consensus 63 i~~~~~~d~G~Y~C~~~~~~~-----------~--~~~~~~l~v~---~~~~~~~-~~~~~~~~~g~~v~l~C~~~~~-~ 124 (371)
|.+++.+|+|.|.|.+.+..+ . ......|.|. ...|.+. ..+...+..|+.++|.|.+.+. |
T Consensus 90 I~~v~~~DsG~Y~C~~~~~~~~~~~~w~~~~~~~~~~~~t~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~~~~p 169 (239)
T 3tv3_H 90 LNSVTAADTATYYCARFGGEVLRYTDWPKPAWVDLWGRGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFP 169 (239)
T ss_dssp ECSCCGGGCEEEEEEEEEEECSSCSSSCEEEEEEEECCCEEEEECCCCCBCCEEEEECCCCCC--TTEEEEEEEEEEEBS
T ss_pred ECCCChhhCEEEEEEEecCccccccccccccceeeeCCCcEEeeccCCCcCCEEEEECCChhhccCCcEEEEEEEeeEeC
Confidence 999999999999999976421 0 1112355554 1334443 2333334679999999999874 4
Q ss_pred CCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeee
Q psy14542 125 LSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLL 204 (371)
Q Consensus 125 ~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~ 204 (371)
.+..+.|++++..+..... .......| .+... +.|.|......| |.|+|.+.+. .+....
T Consensus 170 ~~~~v~W~~~g~~~~~~~~------~~~~~~~g---------~~~~~--s~L~i~~~~~~~--~~ytC~v~h~-~~~~~~ 229 (239)
T 3tv3_H 170 EPVTVSWNSGALTSGVHTF------PAVLQSSG---------LYSLS--SVVTVPSSSLGT--QTYICNVNHK-PSNTKV 229 (239)
T ss_dssp SCCEEEEGGGTBCTTEEEC------CCEECTTS---------CEEEE--EEEEEEGGGTTT--CCCEEEEEEG-GGTEEE
T ss_pred CCeEEEEEECCccCceEec------CceECCCC---------CEEEE--EEEEEchhhcCC--CEEEEEEEEC-CCCceE
Confidence 4457899998863321100 00011223 33222 567777765543 8999999998 544333
No 389
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A
Probab=99.60 E-value=2.1e-15 Score=102.97 Aligned_cols=88 Identities=18% Similarity=0.249 Sum_probs=71.3
Q ss_pred ccceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEeCC--cccccCCceEEe--cceEEEeccCCCCCeEEEEEEEcC
Q psy14542 221 SAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQD--SPVEESDRIQRI--GSSLSISHVEESDSGVWNCVANNS 296 (371)
Q Consensus 221 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~--~~~~~~~~~~~~--~~~l~i~~~~~~d~G~Y~C~a~n~ 296 (371)
+|.+...+.... +..|+.+.|.|.+.|.|.|.+.|++++ ..+......... .+.|.|.++..+|+|.|+|.|.|.
T Consensus 2 ~P~i~~~~~~~~-v~~G~~~~l~C~~~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~ 80 (93)
T 1wit_A 2 KPKILTASRKIK-IKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKNE 80 (93)
T ss_dssp CCEECCCCCEEE-ECTTBCCEEEEEEECCSSCEEEEECSTTTCBCSTTSEEEEETTEEEEECTTBCGGGCEEEEEEEEET
T ss_pred CCeEEcCCCceE-EeCCCEEEEEEEEEEcCCCEEEEEECCCCcccCCcEEEEecCCEEEEEECCCChhcCEEEEEEEEcC
Confidence 344544445555 999999999999999999999999999 777655433322 257999999999999999999999
Q ss_pred CCCceeEEEEEEe
Q psy14542 297 EGQDKMQLFIQYA 309 (371)
Q Consensus 297 ~g~~~~~~~l~v~ 309 (371)
.|....++.|.|.
T Consensus 81 ~G~~~~~~~l~V~ 93 (93)
T 1wit_A 81 LGEDEAIFEVIVQ 93 (93)
T ss_dssp TEEEEEEEEEEEC
T ss_pred CCeEEEEEEEEEC
Confidence 9998888888773
No 390
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex, alternative splicing, ATP-binding, calcium, calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Probab=99.60 E-value=4.8e-15 Score=104.10 Aligned_cols=92 Identities=20% Similarity=0.325 Sum_probs=77.9
Q ss_pred cccceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccCCceEE-ecc---eEEEeccCCCCCeEEEEEEEc
Q psy14542 220 LSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQR-IGS---SLSISHVEESDSGVWNCVANN 295 (371)
Q Consensus 220 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~-~~~---~l~i~~~~~~d~G~Y~C~a~n 295 (371)
.+|.+...+.... +..|+.+.|.|.+.+.|.+.+.|++++..+....++.. .++ .|.|.++..+|+|.|+|.|.|
T Consensus 12 ~~P~~~~~~~~~~-v~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n 90 (107)
T 3irg_B 12 SPPCFLRFPRPVR-VVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAGVYVCRARN 90 (107)
T ss_dssp EEEEEEECCCCEE-EETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEECCEETTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred CCCeeEcCCccEE-EeCCCeEEEEEEEeecCCCEEEEEECCeECCCCCcEEEEeCCCEEEEEEccCCHHhCEEEEEEEEc
Confidence 5677776666666 99999999999999999999999999998887766652 223 799999999999999999999
Q ss_pred CCCCceeEEEEEEecCc
Q psy14542 296 SEGQDKMQLFIQYAHGK 312 (371)
Q Consensus 296 ~~g~~~~~~~l~v~~~p 312 (371)
..|.....+.|.|.++|
T Consensus 91 ~~g~~~~~~~l~V~~~P 107 (107)
T 3irg_B 91 AAGEAYAAAAVTVLEPP 107 (107)
T ss_dssp TTEEEEEEEEEEEEC--
T ss_pred CCCcEEEEEEEEEEcCC
Confidence 99999999999998765
No 391
>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus}
Probab=99.60 E-value=1.1e-14 Score=119.51 Aligned_cols=160 Identities=16% Similarity=0.242 Sum_probs=101.6
Q ss_pred CCCcEEEeccCcEEEEEEecCCC-CCCeeEEEeCC--E---EEe---------------eC----------CeeEEEEcc
Q psy14542 17 PSGQVVVDVGHRIELHCRVSPKR-LSSAKAWLKDG--L---VLR---------------RN----------SDEVLVLDR 65 (371)
Q Consensus 17 p~~~~~~~~G~~v~l~C~~~~~~-~~~~~~W~~~~--~---~~~---------------~~----------~~~~l~i~~ 65 (371)
|.. +.+.+|++++|.|.+.... ....+.|+|+. . .+. .. ...+|.|.+
T Consensus 13 p~~-~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~ 91 (261)
T 2xqy_G 13 PGA-ELVKPGASVKMSCKASGYSFTSYWMNWVKQRPGRGLEWIGRIDPSDNETHYNQDFKDKVTLTVDKSSSTVYIQLSS 91 (261)
T ss_dssp CSE-EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECS
T ss_pred CCC-EEEcCCCCEEEEEEeCCcccCCceEEEEEeCCCCCcEEEEEEecCCCceeeCCccCCcEEEEecCCCCEEEEEEcC
Confidence 444 7899999999999665322 15779999852 1 110 00 246899999
Q ss_pred CCcCCCeEEEEEEEcCCCCe---EEEEEEEEec---ceeeEec-CCceeeecCCcEEEEEEecCC-CCCceEEEeeCCEE
Q psy14542 66 VQREDAGMYQCHVSADDDSA---QMSAQVILGG---ELVEIAS-SNQVVVDVGHRIELHCRVSPK-RLSSAKAWLKDGLV 137 (371)
Q Consensus 66 ~~~~d~G~Y~C~~~~~~~~~---~~~~~l~v~~---~~~~~~~-~~~~~~~~g~~v~l~C~~~~~-~~~~~v~W~~~~~~ 137 (371)
++.+|+|.|.|.+.+..+.. .....|.|.. .+|.+.. .+...+..|+.++|.|.+.+. |.+..+.|++++..
T Consensus 92 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p~~~v~~g~~v~L~C~~~g~~P~~i~v~W~k~g~~ 171 (261)
T 2xqy_G 92 LTSEDSAVYYCGRLGYVYGFDYWGQGTTLTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLS 171 (261)
T ss_dssp CCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEECCCCC--CCSEEEEEEEEEEEBSSCCEEEEGGGTCC
T ss_pred CCcccCeEEEEEEecCCCcceEECCCEEEEEccCCCCCCeEEEeCCCccccCCCcEEEEEEEEeEeCCCCEEEEecCCCc
Confidence 99999999999999754211 1235677763 2233332 333334679999999999875 54349999998865
Q ss_pred eeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeecc
Q psy14542 138 LRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNK 197 (371)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~ 197 (371)
+...... ... .. |.| .. .+.|.|..... | .|.|+|.+.|.
T Consensus 172 ~~~~~~~-----~~~-~~-g~~---------~~--~s~L~i~~~~~-~-~g~YtC~v~n~ 211 (261)
T 2xqy_G 172 SGVHTFP-----AVL-QS-DLY---------TL--SSSVTVTSSTW-P-SQSITCNVAHP 211 (261)
T ss_dssp TTEEECC-----CEE-ET-TEE---------EE--EEEEEEETTTT-T-TSCCEEEEEEG
T ss_pred CceEecC-----cee-cC-CcE---------EE--EEEEEEecccc-C-CCEEEEEEEEC
Confidence 4211000 000 01 222 21 25788877666 5 49999999987
No 392
>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E 2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D* 3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E 3kxf_E 2cde_B ...
Probab=99.59 E-value=6.9e-15 Score=120.37 Aligned_cols=182 Identities=15% Similarity=0.195 Sum_probs=107.0
Q ss_pred eeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEe----ccceEEEEEe
Q psy14542 106 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHML----SSGELIIHQV 181 (371)
Q Consensus 106 ~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~----~~~~l~i~~~ 181 (371)
..+.+|++++|.|.+.. +. ..+.|++..... ............. +......+++.+. .+..|.|.++
T Consensus 13 v~v~~G~~v~L~C~~~~-~~-~~v~W~r~~~~~--~~~~l~~~~~~~~-----~~~~~~~~R~~~~~~~~~~~~L~I~~v 83 (252)
T 1oga_E 13 LFRKEGQNVTLSCEQNL-NH-DAMYWYRQDPGQ--GLRLIYYSQIVND-----FQKGDIAEGYSVSREKKESFPLTVTSA 83 (252)
T ss_dssp EEEETTCCEEECCEECS-CC-SEEEEEEECTTC--CEEEEEEESSTTC-----CEECSSCTTEEECCSSTTBCCEEECSC
T ss_pred EEEcCCCcEEEEEEeCC-CC-CEEEEEEECCCC--CeEEEEEEccCcc-----ccCCccCCcEEEEecCCCEEEEEECcC
Confidence 34589999999999854 34 799999853100 0001111111000 0000012233333 2358999999
Q ss_pred ecCCccceeEEEeeccc--cceeeeeeccceeeeecch-hccccceeee-eeeeeeeecCCeEEEEEEeecC-CC-CceE
Q psy14542 182 DESDRYRSYQCRGVNKL--TGASLLSVNRGRLSLTENK-RLLSAAKMFE-KHRILNVKKDESVILPCSAQGN-PL-PTIK 255 (371)
Q Consensus 182 ~~~d~~g~y~C~~~~~~--~~~~~~~~~~~~l~v~~~~-~~~~p~~~~~-~~~~~~~~~g~~~~l~C~~~~~-p~-~~v~ 255 (371)
+.+| +|.|.|.+.+.. ........ .+.|.... ...+|.+... +.... +..|+.+.|.|.+.+. |. +.+.
T Consensus 84 ~~~D-~G~Y~C~~~~~~~~~~~~~~~~---~l~V~~~~~~~~~P~v~~~~~~~~~-~~~g~~~~L~C~~~g~~P~~~~v~ 158 (252)
T 1oga_E 84 QKNP-TAFYLCASSSRSSYEQYFGPGT---RLTVTEDLKNVFPPEVAVFEPSEAE-ISHTQKATLVCLATGFYPDHVELS 158 (252)
T ss_dssp CSCC-CEEEEEEEESSTTSCCEECCCE---EEEEESCGGGCBCCEEEEECCCHHH-HHHHSEEEEEEEEEEEBSSCEEEE
T ss_pred Chhh-CEEEEEEEecCCccceeECCCE---EEEEecccCCCCCCeEEEECCChhh-hccCCceEEEEEEeeEcCCCcEEE
Confidence 9999 999999998751 01111122 45555321 1135555443 22222 4578999999999985 65 4899
Q ss_pred EEeCCcccccCCceE---------------EecceEEEeccCCC-CCeEEEEEEEcCCCCce
Q psy14542 256 WYKQDSPVEESDRIQ---------------RIGSSLSISHVEES-DSGVWNCVANNSEGQDK 301 (371)
Q Consensus 256 W~~~~~~~~~~~~~~---------------~~~~~l~i~~~~~~-d~G~Y~C~a~n~~g~~~ 301 (371)
|+++|..+..+.... ...+.|.|...... |.|.|+|.|.|......
T Consensus 159 W~~~g~~l~~~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~~~~ytC~v~~~~l~~~ 220 (252)
T 1oga_E 159 WWVNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLSEN 220 (252)
T ss_dssp EEETTEEECSSEEECSSCEESCTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBCTT
T ss_pred EEECCEECCCCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCEEEEEEEcCCCCCC
Confidence 999998765432110 11134777766654 67899999999876544
No 393
>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2
Probab=99.59 E-value=4.7e-14 Score=111.58 Aligned_cols=122 Identities=17% Similarity=0.255 Sum_probs=79.1
Q ss_pred EEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCC-----EEE--------eeC-----------CeeEEEEccCCc
Q psy14542 13 IEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDG-----LVL--------RRN-----------SDEVLVLDRVQR 68 (371)
Q Consensus 13 ~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~-----~~~--------~~~-----------~~~~l~i~~~~~ 68 (371)
+...|.. +.+.+|++++|.|...... ..+.|+|.. ..+ ... ...+|.|.+++.
T Consensus 4 v~q~p~~-v~v~~G~~v~L~C~~~~~~--~~v~W~r~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~~L~I~~v~~ 80 (207)
T 1ypz_E 4 VEQSPSA-LSLHEGTDSALRCNFTTTM--RSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSKERRYSTLHIRDAQL 80 (207)
T ss_dssp EEESCSE-EEEETTCCEEEEEEESSCC--SEEEEEEECTTSCCEEEEEESSEEEEETTEEEEECTTTCSEEEEEECSCCG
T ss_pred cEECCCe-EEEccCCcEEEEEEEeCCC--eEEEEEEeCCCCCeEEEEEEccCCccCCCEEEEeccCCCCEEEEEECCCCH
Confidence 4444555 8899999999999765432 479999832 121 111 346899999999
Q ss_pred CCCeEEEEEEEcCCC---------Ce--EEEEEEEEecceeeEecCCceeeecCCcEEEEEEecCCCC-CceEEEeeCCE
Q psy14542 69 EDAGMYQCHVSADDD---------SA--QMSAQVILGGELVEIASSNQVVVDVGHRIELHCRVSPKRL-SSAKAWLKDGL 136 (371)
Q Consensus 69 ~d~G~Y~C~~~~~~~---------~~--~~~~~l~v~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~-~~~v~W~~~~~ 136 (371)
+|+|.|.|.+.+..+ .. .....|.|.. .......|...+..+ .+.|.|.+.+..+ ++.++|+++ .
T Consensus 81 ~D~G~Y~C~~~~~~~~~p~~~~~~~~~~~~~t~L~V~~-~~~~~~~P~v~~~~~-~~~l~C~~~g~~P~~~~v~W~~~-~ 157 (207)
T 1ypz_E 81 EDSGTYFCAADTWHISEGYELGTDKLVFGQGTQVTVEP-KSQPPAKPSVFIMKN-GTNVACLVKDFYPKEVTISLRSS-K 157 (207)
T ss_dssp GGCEEEEEEEECBCCCTTCCCCCCCCEECCCEEEEEEC-CCCCCCCCEEEEEEE-TTEEEEEEEEESSSCCEEEEECS-S
T ss_pred HHCEEEEEEEecCCcccccccccceeeecCccEEEEcc-CCCCCCCCeEEEeCC-CCeEEEEEeeEeCCCeEEEEecC-C
Confidence 999999999987632 11 1235677762 111122233333222 3799999987644 379999998 6
Q ss_pred Eeee
Q psy14542 137 VLRR 140 (371)
Q Consensus 137 ~~~~ 140 (371)
.+..
T Consensus 158 ~l~~ 161 (207)
T 1ypz_E 158 KIVE 161 (207)
T ss_dssp EEEE
T ss_pred cccC
Confidence 6543
No 394
>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ...
Probab=99.59 E-value=7.8e-15 Score=118.99 Aligned_cols=180 Identities=14% Similarity=0.174 Sum_probs=104.8
Q ss_pred eeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEe----ccceEEEEEe
Q psy14542 106 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHML----SSGELIIHQV 181 (371)
Q Consensus 106 ~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~----~~~~l~i~~~ 181 (371)
..+.+|+.++|.|.+.. +. ..+.|+|.+... .....+...... ..+ .....+++.+. .+..|.|.++
T Consensus 9 v~v~~G~~v~L~C~~~~-~~-~~v~W~r~~~~~--~~~~l~~~~~~~----~~~-~~~~~~R~~~~~~~~~~~~L~I~~v 79 (238)
T 1bec_A 9 KVAVTGGKVTLSCQQTN-NH-NNMYWYRQDTGH--GLRLIHYSYGAG----STE-KGDIPDGYKASRPSQEQFSLILELA 79 (238)
T ss_dssp EEEETTCCEEEEEEESS-CC-SEEEEEEECTTS--CEEEEEEEEETT----EEE-ECSCCTTCEEECCSSSEEEEEESSC
T ss_pred eEEeCCCcEEEEEEeCC-CC-ceEEEEEECCCC--CEEEEEEEeCCC----ccc-CCCccceEEEEecCCCEEEEEEecC
Confidence 34589999999999854 34 799999854100 000111111100 000 00002344432 2357999999
Q ss_pred ecCCccceeEEEeeccccc-----eeeeeeccceeeeecch-hccccceeeee-eeeeeeecCCeEEEEEEeecC-CCC-
Q psy14542 182 DESDRYRSYQCRGVNKLTG-----ASLLSVNRGRLSLTENK-RLLSAAKMFEK-HRILNVKKDESVILPCSAQGN-PLP- 252 (371)
Q Consensus 182 ~~~d~~g~y~C~~~~~~~~-----~~~~~~~~~~l~v~~~~-~~~~p~~~~~~-~~~~~~~~g~~~~l~C~~~~~-p~~- 252 (371)
+.+| +|.|.|.+.+. .+ ...... .|.|.... ...+|.+.... .... +..|+.+.|.|.+.|. |.+
T Consensus 80 ~~~D-~G~Y~C~~~~~-~~~~~~~~~~~~~---~l~V~~~~~~~~~P~v~~~~~~~~~-~~~g~~~~L~C~~~g~~P~~~ 153 (238)
T 1bec_A 80 TPSQ-TSVYFCASGGG-RGSYAEQFFGPGT---RLTVLEDLRQVTPPKVSLFEPSKAE-IANKQKATLVCLARGFFPDHV 153 (238)
T ss_dssp CGGG-CEEEEEEEESC-TTCGGGCEECCCE---EEEEESCGGGCBCCEEEEECCCSTT-CSSSCSCSEEEEEEEEBSCCE
T ss_pred Cccc-CEEEEEEEecC-CCCccccccCCCE---EEEEeccCCCCCCCceEEECCChHH-cccCCceEEEEEEeeEeCCCc
Confidence 9999 99999999876 21 111122 56665321 11345554432 2223 5679999999999985 655
Q ss_pred ceEEEeCCcccccCCce-----EEecce------EEEeccCCCC-CeEEEEEEEcCCCCc
Q psy14542 253 TIKWYKQDSPVEESDRI-----QRIGSS------LSISHVEESD-SGVWNCVANNSEGQD 300 (371)
Q Consensus 253 ~v~W~~~~~~~~~~~~~-----~~~~~~------l~i~~~~~~d-~G~Y~C~a~n~~g~~ 300 (371)
.+.|+++|..+..+.+. ...++. |.|......| .|.|+|.|.|.....
T Consensus 154 ~v~W~~~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~~~ytC~v~~~~l~~ 213 (238)
T 1bec_A 154 ELSWWVNGKEVHSGVSTDPQAYKESNYSYCLSSRLRVSATFWHNPRNHFRCQVQFHGLSE 213 (238)
T ss_dssp EEEEEETTEEECTTEEECSSCEEEETTEEEEEEEECCCHHHHTCTTCEEEEEEEECCCCT
T ss_pred EEEEEECCEECCCceecccceEeCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEcCCCCC
Confidence 89999999877654221 122333 3343333334 678999999975443
No 395
>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49}
Probab=99.59 E-value=2.5e-13 Score=106.95 Aligned_cols=155 Identities=15% Similarity=0.227 Sum_probs=107.5
Q ss_pred eeecCCcEEEEEEecCCCC---CceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeec
Q psy14542 107 VVDVGHRIELHCRVSPKRL---SSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDE 183 (371)
Q Consensus 107 ~~~~g~~v~l~C~~~~~~~---~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~ 183 (371)
.+..|+.++|.|.+.+..+ +..|+|+|++..+.... ..|.+..+..
T Consensus 13 ~i~~GdsVTLTatVaGGkP~pspyTYqWyKDG~~IsGaT-------------------------------~tLti~s~t~ 61 (304)
T 3shs_A 13 CFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENNT-------------------------------ATLTVADATS 61 (304)
T ss_dssp SBCTTCCEEEEEEEEESSSCCCCEEEEEEETTEECSCCS-------------------------------SEEEESSCCG
T ss_pred cccCCCCEEEEEEecCCCCCCCCceEEEEECCccccCCc-------------------------------ceEEeeeccc
Confidence 3479999999999976533 36899999998765431 4677888888
Q ss_pred CCccceeEEEeeccccceeeeeeccceeeeecchhccccceee-eeeeeeeeecCCeEEEEEEe--ec-CC-----CCce
Q psy14542 184 SDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMF-EKHRILNVKKDESVILPCSA--QG-NP-----LPTI 254 (371)
Q Consensus 184 ~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~-~~~~~~~~~~g~~~~l~C~~--~~-~p-----~~~v 254 (371)
.| +|.|+|.+.+. .+....+. .+.|... ..+.+.. .+.... +..+..+.|.+.+ .| .+ ..++
T Consensus 62 sd-SG~YqCvVTDa-~Gcs~tSs---~VtVT~~---a~l~i~it~P~s~~-vssg~sVtL~aTVt~SGGtppA~~~~yTY 132 (304)
T 3shs_A 62 EN-AGSYKVTVQDT-DTMTSVES---EVFLMEE---AELIVNITEPQHFY-VSSQTDVELHATVKFSGGKTPADNYELHY 132 (304)
T ss_dssp GG-CEEEEEEEEET-TTCCEEEC---CCEEECB---CCEEEEESSCSEEE-ECSSCCEEEEEEEEETTSCCSSTTCCCEE
T ss_pred cC-CeEEEEEEEEC-CCCeeeee---eEEEecc---CceeEEecCCCcee-ccCCCeEEEEEEEeccCCCCcccCCCcee
Confidence 99 99999999987 66544443 4455432 1122222 233333 5567888998887 43 44 4689
Q ss_pred EEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCCCc--eeEEEEEE
Q psy14542 255 KWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQD--KMQLFIQY 308 (371)
Q Consensus 255 ~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~--~~~~~l~v 308 (371)
+|++++..+... ..|.+......++|.|+|.+.|..+.. +.++.+.+
T Consensus 133 QWyKngt~IsgA-------q~lT~sS~TateaG~YtV~VTn~~~~c~~s~~~~i~~ 181 (304)
T 3shs_A 133 SWSKGEDVIDTT-------QDITIQEFTADKNGVYTVKVWGESEDSAASASTKIML 181 (304)
T ss_dssp EEEETTEEEESS-------SEEEECSCCGGGCEEEEEEEESSSGGGCEEEEEEEEE
T ss_pred EEeeCCeEccCc-------cccceeeEEecCCeEEEEEEEcCCCCcccccceEEEE
Confidence 999999866432 357777888899999999999997753 34444444
No 396
>3qhz_H Human monoclonal antibody DEL2D1, FAB heavy chain; immunoglobulin, immune recognition, influenza A hemagglutini system; 1.55A {Homo sapiens} PDB: 3lzf_H* 3qrg_H* 3mod_H 3mob_H 3moa_H 3lev_H* 3idg_B 3d0l_B 3d0v_B 3idi_B 3idj_B 3idm_B* 3idn_B* 1tjg_H* 1tjh_H* 1tji_H* 2pr4_H 3drq_B 2p8m_B 2p8p_B ...
Probab=99.59 E-value=2.2e-14 Score=115.88 Aligned_cols=166 Identities=15% Similarity=0.205 Sum_probs=96.9
Q ss_pred EEEeccCcEEEEEEecCC-CCCCee--EEEeCC-----EEEe------e---------------------CCeeEEEEcc
Q psy14542 21 VVVDVGHRIELHCRVSPK-RLSSAK--AWLKDG-----LVLR------R---------------------NSDEVLVLDR 65 (371)
Q Consensus 21 ~~~~~G~~v~l~C~~~~~-~~~~~~--~W~~~~-----~~~~------~---------------------~~~~~l~i~~ 65 (371)
+.+.+|++++|.|..... .....+ .|+|.. ..+. . ....+|.|.+
T Consensus 10 ~~v~~G~~v~L~C~~~~~~~~~~~i~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~ 89 (232)
T 3qhz_H 10 ALVKPTQTLTLTCSFSGFSLSTSGMSVSWIRQPPGKALEWLALIDWDDDTYYITYSSSLKTRLTISKDTSKSQVVLTMTN 89 (232)
T ss_dssp SEECTTSCEEEEEEEESCGGGCTTCEEEEEEECTTSCCEEEEEEESSSSCEEECCCTTTTTTEEEEEETTTTEEEEEECS
T ss_pred EEECCCCcEEEEEEEeCcccccceeEeEEEEECCCCCcEEEEEEECCCCccccccCccccCceEEEeccCCCEEEEEECc
Confidence 679999999999976532 122334 999721 1110 0 0345799999
Q ss_pred CCcCCCeEEEEEEEcCCC--------CeEEEEEEEEec---ceeeEe-cCCceeeecCCcEEEEEEecCCCC-CceEEEe
Q psy14542 66 VQREDAGMYQCHVSADDD--------SAQMSAQVILGG---ELVEIA-SSNQVVVDVGHRIELHCRVSPKRL-SSAKAWL 132 (371)
Q Consensus 66 ~~~~d~G~Y~C~~~~~~~--------~~~~~~~l~v~~---~~~~~~-~~~~~~~~~g~~v~l~C~~~~~~~-~~~v~W~ 132 (371)
++.+|+|.|.|.+.+..+ .......|.|.. .+|.+. ..+...+..|+.++|.|.+.+.++ +..+.|+
T Consensus 90 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~~~~P~~~~v~W~ 169 (232)
T 3qhz_H 90 MDPVDTATYYCARTLRVSGDYVRDFDLWGRGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWN 169 (232)
T ss_dssp CCGGGCEEEEEEEECCC---CCCCCCEECCCEEEEECSSCCBCCEEEEECC-------CEEEEEEEEEEEBSSCCEEEEG
T ss_pred CChhhCEEEEEEEeeccCccccccceeeCCCeEEEEecCCCCCCEEEEecccccccCCCcEEEEEEEeeEeCCCeEEEEE
Confidence 999999999999986521 112234566641 334444 334444467999999999987543 4678899
Q ss_pred eCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeee
Q psy14542 133 KDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSV 206 (371)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~ 206 (371)
+++..+..... .......| .+... +.|.|......| |.|+|.+.+. .+......
T Consensus 170 ~~g~~~~~~~~------~~~~~~~g---------~~~~~--s~L~i~~~~~~~--g~ytC~v~~~-~~~~~~~~ 223 (232)
T 3qhz_H 170 SGALTSGVHTF------PAVLQSSG---------LYSLS--SVVTVPSSSLGT--QTYICNVNHK-PSNTKVDK 223 (232)
T ss_dssp GGTBCTTEEEC------CCEECTTS---------CEEEE--EEEEEEGGGGGT--CCCEEEEEEG-GGTEEEEE
T ss_pred ECCEecceeec------cceeCCCC---------CEEEE--EEEEEchhhcCC--CEEEEEEEeC-CCCccEEE
Confidence 98853321100 00011122 22222 567777765544 8999999998 54444433
No 397
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}
Probab=99.59 E-value=4.7e-15 Score=102.74 Aligned_cols=92 Identities=20% Similarity=0.345 Sum_probs=75.8
Q ss_pred cccceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccCCceE---Eec--ceEEEeccCCCCCeEEEEEEE
Q psy14542 220 LSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQ---RIG--SSLSISHVEESDSGVWNCVAN 294 (371)
Q Consensus 220 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~---~~~--~~l~i~~~~~~d~G~Y~C~a~ 294 (371)
.+|.+...+.... +..|+.+.|.|.+.|.|.+.+.|++++..+....+.. ..+ ..|.|.++..+|+|.|+|.|.
T Consensus 4 ~~P~~~~~p~~~~-~~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~ 82 (100)
T 2kdg_A 4 GPPRFIQVPENMS-IDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRASDAGAYACVAK 82 (100)
T ss_dssp EEEECCCCCCCEE-EETTCCEEEEEECEEESCCEEEEEETTEEECCCSSSCEEEETTTEEEEEESSCCGGGCEEEEEEEE
T ss_pred CCCeEEeCCCCEE-ecCCCEEEEEEEEEeeCCCEEEEEECCEECcCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEE
Confidence 4566666666666 8999999999999999999999999998877664322 222 279999999999999999999
Q ss_pred cCCCCceeEEEEEEecCc
Q psy14542 295 NSEGQDKMQLFIQYAHGK 312 (371)
Q Consensus 295 n~~g~~~~~~~l~v~~~p 312 (371)
|..|....++.|.|..++
T Consensus 83 n~~g~~~~~~~l~V~~~e 100 (100)
T 2kdg_A 83 NRAGEATFTVQLDVLAKE 100 (100)
T ss_dssp ETTEEEEEEEEEEEECCC
T ss_pred cCCCeEEEEEEEEEEecC
Confidence 999999999999887653
No 398
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}
Probab=99.59 E-value=8.7e-15 Score=104.17 Aligned_cols=93 Identities=22% Similarity=0.340 Sum_probs=79.5
Q ss_pred cccceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEeCCccccc-CCceEEe--c-c--eEEEeccCCCCCeEEEEEE
Q psy14542 220 LSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEE-SDRIQRI--G-S--SLSISHVEESDSGVWNCVA 293 (371)
Q Consensus 220 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~-~~~~~~~--~-~--~l~i~~~~~~d~G~Y~C~a 293 (371)
.+|.+...+.... +..|+.+.|.|.+.|.|.+.+.|++++..+.. ..++... + + +|.|.++..+|+|.|+|.|
T Consensus 14 ~~p~f~~~p~~~~-v~~G~~v~L~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a 92 (116)
T 2kkq_A 14 RAPMFIYKPQSKK-VLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSA 92 (116)
T ss_dssp BCCCBSSCCCCEE-EETTEEEEEEEEBCCBSCCEEEEEETTEECCCCBTTEEEEECTTCEEEEEEEEECGGGCEEEEEEE
T ss_pred CCCeEEeCCCcEE-EeCCCcEEEEEEEeccCCCEEEEEECCEECcCCCCeEEEEeCCCCeEEEEECCCCcccCEEEEEEE
Confidence 5677777777776 99999999999999999999999999988774 3455422 2 2 7999999999999999999
Q ss_pred EcCCCCceeEEEEEEecCcc
Q psy14542 294 NNSEGQDKMQLFIQYAHGKY 313 (371)
Q Consensus 294 ~n~~g~~~~~~~l~v~~~p~ 313 (371)
.|..|.....+.|.|..+|.
T Consensus 93 ~N~~G~~~~~~~l~V~~~p~ 112 (116)
T 2kkq_A 93 VNEAGVTTCNTRLDVTARPN 112 (116)
T ss_dssp EETTEEEEEEEEEEEECCSC
T ss_pred EcCCCeEEEEEEEEEeCCCC
Confidence 99999999999999998776
No 399
>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody, immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2qej_A*
Probab=99.59 E-value=3e-16 Score=125.08 Aligned_cols=171 Identities=12% Similarity=0.142 Sum_probs=106.2
Q ss_pred cceEEEeCCCcEEEeccCcEEEEEEecCCCC--CCeeEEEeCCEEEee--------C------CeeEEEEccCCcCCCeE
Q psy14542 10 SLSIEMSPSGQVVVDVGHRIELHCRVSPKRL--SSAKAWLKDGLVLRR--------N------SDEVLVLDRVQREDAGM 73 (371)
Q Consensus 10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~--~~~~~W~~~~~~~~~--------~------~~~~l~i~~~~~~d~G~ 73 (371)
+|.+.+.++....+.+|+.++|.|.+....+ ...+.| +++ .+.. . ....|.|.+++.+|+|.
T Consensus 3 ~p~v~~~~P~~~~v~~G~~v~L~C~~~g~~p~~~~~v~W-~~~-~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~D~g~ 80 (214)
T 1ow0_A 3 HPRLSLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTW-TPS-SGKSAVQGPPERDLCGCYSVSSVLPGCAEPWNHGKT 80 (214)
T ss_dssp CCCCEEECCCHHHHHHCSSCCCEEEETTCCSCCCCCCCB-SSC-SSCCCEECCCCCCSTTCCCEEEECTTTHHHHHHTCE
T ss_pred CCEEEEECcChHHhccCCCcEEEEEEeeeECCCCeEEEE-cCC-CCCCcccCCceECCCCcEEEEEEEEEeHHHcCCCCe
Confidence 4556555333367899999999997655444 268999 532 2110 0 23478889999999999
Q ss_pred EEEEEEcCCCCeEEEEEEEE--ecceeeEecCCc--eeeecCCcEEEEEEecCCCC-CceEEEeeCCEEeeeCCeeEEEE
Q psy14542 74 YQCHVSADDDSAQMSAQVIL--GGELVEIASSNQ--VVVDVGHRIELHCRVSPKRL-SSAKAWLKDGLVLRRNSDEVLVL 148 (371)
Q Consensus 74 Y~C~~~~~~~~~~~~~~l~v--~~~~~~~~~~~~--~~~~~g~~v~l~C~~~~~~~-~~~v~W~~~~~~~~~~~~~~~~~ 148 (371)
|+|.+.+..+.......+.+ ...+|.+...+. ..+..|+.++|.|.+.+.++ ++.++|+++|..+.......
T Consensus 81 Y~C~~~~~~~~~~~~~~i~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~--- 157 (214)
T 1ow0_A 81 FTCTAAYPESKTPLTATLSKSGNTFRPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLT--- 157 (214)
T ss_dssp EEEEECCSSCSSCEEEEEECCSSCCCCEEEEECCCTTTTTSSSEEEEEEEEEEESSSCCEEEEEETTEECCGGGSEE---
T ss_pred EEEEEecCCCCCceeEeeccCCCCCCCEEEecCCCHHHhccCCceEEEEEEeeeECCCcEEEEEECCEECCCCceee---
Confidence 99999987664433333321 113444432221 22357889999999988543 36999999998876542100
Q ss_pred cccCcC---CCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeecc
Q psy14542 149 DRVQRE---DAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNK 197 (371)
Q Consensus 149 ~~~~~~---~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~ 197 (371)
...... ..|.| .+. +.|.+......+ .|.|+|.+.|.
T Consensus 158 ~~~~~~~~~~dgt~---------~~~--s~l~v~~~~~~~-~~~ytC~v~n~ 197 (214)
T 1ow0_A 158 WASRQEPSQGTTTF---------AVT--SILRVAAEDWKK-GDTFSCMVGHE 197 (214)
T ss_dssp CCCEECSCSSSCCE---------EEE--EEEEEEHHHHHH-TCCEEEEEECT
T ss_pred cCCcccccCCCCcE---------EEE--EEEEECHHHccC-CCEEEEEEECC
Confidence 001111 23333 222 456666555556 89999999987
No 400
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=6e-15 Score=101.98 Aligned_cols=89 Identities=21% Similarity=0.411 Sum_probs=74.7
Q ss_pred cccceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccCCceEE-ecceEEEeccCCCCCeEEEEEEEcCCC
Q psy14542 220 LSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQR-IGSSLSISHVEESDSGVWNCVANNSEG 298 (371)
Q Consensus 220 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~-~~~~l~i~~~~~~d~G~Y~C~a~n~~g 298 (371)
.+|.+...+.... +..|+.+.|.|.+.|.|.|.+.|++++..+........ ....|.|.++..+|+|.|+|.|.|..|
T Consensus 10 ~~P~~~~~~~~~~-v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g 88 (99)
T 2yr3_A 10 VAPSFSSVLKDCA-VIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTCEAGVAELHIQDALPEDHGTYTCLAENALG 88 (99)
T ss_dssp EEEEEEECCCCEE-ECTTCCEEEECEEEEESCCCCEEEESSSBCSSCCCEEETTEEEEEECSCCTTCCBCEEEEEECSSC
T ss_pred cCCceeecCCCCE-EeCCCeEEEEEEEeeeCCCeEEEEECCEECcccceEeeCCeEEEEECCCChhhCEEEEEEEEECCC
Confidence 5677776666666 99999999999999999999999999998876544332 235799999999999999999999999
Q ss_pred CceeEEEEEEe
Q psy14542 299 QDKMQLFIQYA 309 (371)
Q Consensus 299 ~~~~~~~l~v~ 309 (371)
....++.|.|+
T Consensus 89 ~~~~~~~l~V~ 99 (99)
T 2yr3_A 89 QVSCSAWVTVH 99 (99)
T ss_dssp EEEEECCEEEC
T ss_pred eEEEEEEEEEC
Confidence 98888877763
No 401
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=7.6e-15 Score=105.03 Aligned_cols=93 Identities=25% Similarity=0.397 Sum_probs=79.5
Q ss_pred cccceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEeCCccccc-CCceE-EecceEEEeccCCCCCeEEEEEEEcCC
Q psy14542 220 LSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEE-SDRIQ-RIGSSLSISHVEESDSGVWNCVANNSE 297 (371)
Q Consensus 220 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~-~~~~~-~~~~~l~i~~~~~~d~G~Y~C~a~n~~ 297 (371)
.+|.+...+.... +..|+.+.|.|.+.|.|.+.+.|++++..+.. ..++. ..+++|.|.++..+|+|.|+|.|.|..
T Consensus 7 ~pP~i~~~p~~~~-v~~G~~v~l~C~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~ 85 (118)
T 2eo9_A 7 GPPVIRQGPVNQT-VAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGVLQIRYAKLGDTGRYTCIASTPS 85 (118)
T ss_dssp CSCCCSBCCCCEE-EETTCEEEEECBCCCSSCCEEEEEESSSBCCTTSTTEEEEETTEEEEESCCGGGCCCEEEEEECSS
T ss_pred CCCEEEcCCCCEE-EcCCCeEEEEEEEEecCCCEEEEEECCEECcCCCCeEEEccCCEEEEccCCcCCCEEEEEEEEcCC
Confidence 5667766666666 99999999999999999999999999988864 34443 456789999999999999999999999
Q ss_pred CCceeEEEEEEecCcc
Q psy14542 298 GQDKMQLFIQYAHGKY 313 (371)
Q Consensus 298 g~~~~~~~l~v~~~p~ 313 (371)
|.....+.|.|..++.
T Consensus 86 g~~~~~~~l~V~~~~~ 101 (118)
T 2eo9_A 86 GEATWSAYIEVQEFGV 101 (118)
T ss_dssp CEEEEECCEEEECCSC
T ss_pred CcEEEEEEEEEEeCCC
Confidence 9998889999987765
No 402
>1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2
Probab=99.58 E-value=5.1e-14 Score=113.44 Aligned_cols=182 Identities=12% Similarity=0.130 Sum_probs=104.3
Q ss_pred eeeecCCcEEEEEEecCC--CCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEec-----cceEEE
Q psy14542 106 VVVDVGHRIELHCRVSPK--RLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLS-----SGELII 178 (371)
Q Consensus 106 ~~~~~g~~v~l~C~~~~~--~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~-----~~~l~i 178 (371)
..+.+|++++|.|.+.+. +. ..+.|++.... ......+....... .+.....++++.+.. +..|.|
T Consensus 11 v~~~~G~~v~L~C~~~~~~~~~-~~v~W~r~~~~--~~~~~l~~~~~~~~----~~~~~~~~~R~~~~~~~~~~~~~L~I 83 (230)
T 1ypz_F 11 ISRPRDETAQISCKVFIESFRS-VTIHWYRQKPN--QGLEFLLYVLATPT----HIFLDKEYKKMEASKNPSASTSILTI 83 (230)
T ss_dssp EEEETTSCEEEEEEECCGGGGG-CCEEEEEECTT--TCCEEEEEECSSCC----CEEEESSSSEEEEEECCTTTEEEEEE
T ss_pred EEEeCCCcEEEEEEeeccccCc-cEEEEEEECCC--CCCEEEEEEecCCe----eecCcccCCeEEEEEcCCCCEEEEEE
Confidence 345899999999999764 33 68999984310 00011111111000 000000123444332 247999
Q ss_pred EEeecCCccceeEEEeecc---ccceeeeeeccceeeeecchh----ccccceeee-eeeeeeeecCCeEEEEEEeecC-
Q psy14542 179 HQVDESDRYRSYQCRGVNK---LTGASLLSVNRGRLSLTENKR----LLSAAKMFE-KHRILNVKKDESVILPCSAQGN- 249 (371)
Q Consensus 179 ~~~~~~d~~g~y~C~~~~~---~~~~~~~~~~~~~l~v~~~~~----~~~p~~~~~-~~~~~~~~~g~~~~l~C~~~~~- 249 (371)
.+++.+| +|.|.|.+.+. ......... .|.|..... ..+|..... +.... +..|+.++|.|.+.+.
T Consensus 84 ~~v~~~D-~G~Y~C~~~~~~~~~~~~~~~~~---~L~V~~~~~~l~~~~~p~~~v~~p~~~~-v~~g~~~~L~C~~~g~~ 158 (230)
T 1ypz_F 84 YSLEEED-EAIYYCSYGEGSSGFHKVFAEGT---KLIVIPSDKRLDADISPKPTIFLPSVAE-TNLHKTGTYLCLLEAFF 158 (230)
T ss_dssp CSCCGGG-CSEEEEEECCTTTCCCCEECSCE---EEEEECCCTTCCSCCSCCCCEECCCHHH-HHHHSCEEEEEEEEEES
T ss_pred CcCChhh-CEEEEEEEECCCCCcccccCCCE---EEEEecccccCcccCCCCceEECCCchh-hccCCcceEEEEEeeec
Confidence 9999999 99999999873 010111122 566652110 012222221 22222 5578999999999875
Q ss_pred CC-CceEEEe-CCcccccCC--ceE------EecceEEEeccCCCCCeEEEEEEEcCCCCce
Q psy14542 250 PL-PTIKWYK-QDSPVEESD--RIQ------RIGSSLSISHVEESDSGVWNCVANNSEGQDK 301 (371)
Q Consensus 250 p~-~~v~W~~-~~~~~~~~~--~~~------~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~ 301 (371)
|. +.+.|++ +|..+.... ... ...+.|.|..... + |.|+|.|.|..+...
T Consensus 159 P~~~~v~W~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~-~~ytC~v~~~~~~~~ 218 (230)
T 1ypz_F 159 PDVIRVYWKEKDGNTILDSQEGDTLKTNDTYMKFSWLTVPERAM-G-KEHRCIVKHENNKGG 218 (230)
T ss_dssp SCCCEEEEECTTSSCBCCCEECCCEEETTEEEEEEEEEECGGGT-T-SCEEEEEECSSCTTT
T ss_pred CCCeEEEEEccCCeEccccccceeecCCCCEEEEEEEEEEhhhC-C-CEEEEEEEECCCCCc
Confidence 75 5899999 777654321 111 1224688887775 4 999999999887643
No 403
>3sob_H Antibody heavy chain, low-density lipoprotein receptor-related protein; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_B 3uls_H 3ulu_D* 3ulv_D*
Probab=99.58 E-value=3.8e-14 Score=116.18 Aligned_cols=193 Identities=11% Similarity=0.157 Sum_probs=108.1
Q ss_pred ceeeecCCcEEEEEEecCCC-CCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEec-----cceEEE
Q psy14542 105 QVVVDVGHRIELHCRVSPKR-LSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLS-----SGELII 178 (371)
Q Consensus 105 ~~~~~~g~~v~l~C~~~~~~-~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~-----~~~l~i 178 (371)
...+.+|++++|.|.+.+.. ....+.|++.... ......+...... ...+......+++.+.. +..|.|
T Consensus 32 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~--~~~~~~~~~~~~~---~~~~~~~~~~~R~~~~~~~~~~~~sL~I 106 (256)
T 3sob_H 32 GGLVQPGGSLRLSCAASGFTFTNSYIHWVRQAPG--KGLEWVGWITPYG---GYTNYADSVKGRFTISADTSKNTAYLQM 106 (256)
T ss_dssp CCEECTTCCEEEEEEEESSCGGGSCEEEEEECTT--CCCEEEEEEETTT---TEEEECTTTTTTEEEEEEGGGTEEEEEE
T ss_pred cEEEcCCCCEEEEEEeeccccCCCEEEEEEECCC--CCcEEEEEEecCC---CceecCCCCCCcEEEEEeCCCCEEEEEE
Confidence 34468999999999997532 2268999974210 0011111111100 00000000012333332 235999
Q ss_pred EEeecCCccceeEEEeeccccc--------eeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeec-C
Q psy14542 179 HQVDESDRYRSYQCRGVNKLTG--------ASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQG-N 249 (371)
Q Consensus 179 ~~~~~~d~~g~y~C~~~~~~~~--------~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~-~ 249 (371)
.+++.+| +|.|.|.+.+. .+ ..........+.|.... ..+|.+........ +..|+.++|.|.+.+ .
T Consensus 107 ~~v~~~D-sG~Y~C~~~~~-~~~~~~~~~~~~~~~~~~~~l~V~~~~-~~~P~i~~~~~~~~-~~~g~~v~L~C~~~~~~ 182 (256)
T 3sob_H 107 NSLRAED-TAVYYCARGSG-HVNAVKNYGYVMDYWGQGTLVTVSSAS-TKGPSVFPLAPSSK-STSGGTAALGCLVKDYF 182 (256)
T ss_dssp CSCCGGG-CEEEEEEEESS-CTTCSSCCTTSEEEECCCEEEEECSSC-CBCCEEEEECCC------TTEEEEEEEEEEEB
T ss_pred CCCCccc-CEEEEEEEecC-CCccccccccceeEECCCEEEEEecCC-CCCCEEEEECCCcc-cccCCcEEEEEEEEEEE
Confidence 9999999 99999999864 20 00111111155554321 14455543333333 678999999999987 4
Q ss_pred C-CCceEEEeCCcccccC----------CceEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEe
Q psy14542 250 P-LPTIKWYKQDSPVEES----------DRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYA 309 (371)
Q Consensus 250 p-~~~v~W~~~~~~~~~~----------~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 309 (371)
| .+.+.| ++..+... +......+.|.|.....+| |.|+|.+.|..+.......|.+.
T Consensus 183 p~~~~v~W--~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-~~ytC~v~~~~~~~~~~~~~~~~ 250 (256)
T 3sob_H 183 PEPVTVSW--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEPK 250 (256)
T ss_dssp SSCCEEEE--GGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGTEEEEEECCCC
T ss_pred CCCeEEEE--CCcccCCCeEeCCceeCCCCCEEEEEEEEECHHHcCC-ceEEEEEEeCCCCcceEEEeccc
Confidence 5 356999 55544321 0111122468899999999 99999999998887666666554
No 404
>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X
Probab=99.58 E-value=6.6e-15 Score=102.29 Aligned_cols=80 Identities=21% Similarity=0.410 Sum_probs=68.8
Q ss_pred eecCCeEEEEEEeecCCCCceEEEeCCcccccCCceE---------EecceEEEeccCCCCCeEEEEEEEcCCCCceeEE
Q psy14542 234 VKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQ---------RIGSSLSISHVEESDSGVWNCVANNSEGQDKMQL 304 (371)
Q Consensus 234 ~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~---------~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~ 304 (371)
...+..+.|.|.+.|.|.|.++|+++|..+..+.+.. ...+.|.|.++..+|+|.|+|.|.|..|....++
T Consensus 13 ~~~~~~~~~~c~v~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~ 92 (103)
T 1wwb_X 13 PTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQI 92 (103)
T ss_dssp CCCCCEEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCEEEEEE
T ss_pred ceECcEEEEEEEEEEeCCCEEEEEECCEECCCCCcEeEEEEecCCcEEEEEEEECCCCcccCEEEEEEEEeCCCcEeEEE
Confidence 3457889999999999999999999999888775531 1223599999999999999999999999999999
Q ss_pred EEEEecCcc
Q psy14542 305 FIQYAHGKY 313 (371)
Q Consensus 305 ~l~v~~~p~ 313 (371)
.|.|..+|.
T Consensus 93 ~l~V~~~P~ 101 (103)
T 1wwb_X 93 SAHFMGWPG 101 (103)
T ss_dssp EECCSCCCC
T ss_pred EEEECCCCC
Confidence 999988775
No 405
>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain, integrin, allosteric mobility, cell adhesi immune system; HET: NAG; 2.10A {Homo sapiens}
Probab=99.58 E-value=6.1e-14 Score=107.77 Aligned_cols=166 Identities=15% Similarity=0.115 Sum_probs=110.4
Q ss_pred cceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEe--CCEEEeeC-CeeEEEEccCCcCCCeEEEEEEEcCCCCeE
Q psy14542 10 SLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLK--DGLVLRRN-SDEVLVLDRVQREDAGMYQCHVSADDDSAQ 86 (371)
Q Consensus 10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~--~~~~~~~~-~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~ 86 (371)
++.+.+.|+. ..|.+|+++.|.|.+.-..+ ..+.|.- ++.....+ ....+.|.+++ +|.+.|.|.+........
T Consensus 2 ~f~v~v~P~~-~~V~~G~Sv~l~Cs~~c~~p-~~~~~~t~l~~~~~~~g~~~~~~~ls~vs-~d~~~~~C~~~c~~~~~~ 78 (196)
T 3bn3_B 2 PFWADLQPRV-AFVERGGSLWLNCSTNCPRP-ERGGLETSLRRNGTQRGLRWLARQLVDIR-EPETQPVCFFRCARRTLQ 78 (196)
T ss_dssp CSCEEEESSE-EEEETTEEEEEEEEECCSSC-SEEEEECSSEEEEEEEETTEEEEEEEEEC-SSEECCEEEEEETTEEEE
T ss_pred CcEEEEcCCC-cEEcCCCeEEEEEeCCCCCC-CccEEEEccCCeeEccccCceEEEEEEEc-cCCCceEEEEECCCCceE
Confidence 5678899988 88999999999997653332 2577743 22233322 34458999998 888889999988666678
Q ss_pred EEEEEEEecceeeEecCCc-eeeecCCcEEEEEEecCCCCCc--eEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEE
Q psy14542 87 MSAQVILGGELVEIASSNQ-VVVDVGHRIELHCRVSPKRLSS--AKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHI 163 (371)
Q Consensus 87 ~~~~l~v~~~~~~~~~~~~-~~~~~g~~v~l~C~~~~~~~~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~ 163 (371)
+.+.|.|+..|..+...+. ..+.+|+.++|.|.+.+..+.. .++|++++..+..... . ++.
T Consensus 79 ~~v~l~Vy~~P~~v~i~~~~~~~~~G~~~tL~C~v~~~~P~~~L~i~wlkg~~~l~~~~~-----~----~~~------- 142 (196)
T 3bn3_B 79 ARGLIRTFQRPDRVELMPLPPWQPVGENFTLSCRVPGAGPRASLTLTLLRGAQELIRRSF-----A----GEP------- 142 (196)
T ss_dssp EECEEEEEBCCCCCEECCCCSSEETTSEEEEEEEETTCBCGGGEEEEEEETTEEEEEEEC-----T----TSC-------
T ss_pred EEEEEEEecCCCcCEEccCCccccCCCcEEEEEEeCCccCCCCcEEEEEeCCEEeecccc-----c----ccc-------
Confidence 8899999854444444333 2368999999999998875533 4899999998864320 0 000
Q ss_pred eCCceeEeccceEEEEEeecCCccceeEEEeeccc
Q psy14542 164 EDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKL 198 (371)
Q Consensus 164 ~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~ 198 (371)
..... ....+.+.... +|+...|+|.|.+..
T Consensus 143 -~~~~~--~t~~~~~~~~r-~D~g~~~sC~A~l~l 173 (196)
T 3bn3_B 143 -PRARG--AVLTATVLARR-EDHGANFSCRAELDL 173 (196)
T ss_dssp -TTCCC--EEEEEEEECCG-GGTTCEEEEEEEEEC
T ss_pred -ccccc--eeEEEEEeeee-ccCCCeEEEEEEccC
Confidence 00000 11345555444 553779999999873
No 406
>3mlr_H Human monoclonal anti-HIV-1 GP120 V3 antibody 255 heavy chain; human monoclonal antibody, FAB, third variable antibody-antigen interaction; 1.80A {Homo sapiens} PDB: 3mls_H 3mlt_H 3mlu_H 3mlv_H
Probab=99.58 E-value=7.4e-14 Score=112.16 Aligned_cols=191 Identities=13% Similarity=0.164 Sum_probs=108.5
Q ss_pred CCceeeecCCcEEEEEEecCCC-CCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEec-----cceE
Q psy14542 103 SNQVVVDVGHRIELHCRVSPKR-LSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLS-----SGEL 176 (371)
Q Consensus 103 ~~~~~~~~g~~v~l~C~~~~~~-~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~-----~~~l 176 (371)
.+...+.+|++++|.|.+.+.. ....+.|++.... ......+.+.... ...+......+++.+.. +..|
T Consensus 7 ~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~rq~~~--~~~~~~~~~~~~~---~~~~~~~~~~~R~~~~~~~~~~~~sL 81 (226)
T 3mlr_H 7 SGGEVKQPGQSLKISCKSSGYNFLDSWIGWVRQIPG--KGLEWIGIIYPDD---SDAHYSPSFEGQVTMSVDKSISTAYL 81 (226)
T ss_dssp CCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTT--SCCEEEEEEETTT---TEEEECTTTBTTBEEEEEGGGTEEEE
T ss_pred CCCEEEecCCCEEEEEEecCccccCCEEEEEEECCC--CCcEEEEEEecCC---CccccCcccCCcEEEEecCCCCEEEE
Confidence 3344568999999999997532 2268999984310 0111111111100 00000000012343332 2459
Q ss_pred EEEEeecCCccceeEEEeeccccc-----e-eeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeec-C
Q psy14542 177 IIHQVDESDRYRSYQCRGVNKLTG-----A-SLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQG-N 249 (371)
Q Consensus 177 ~i~~~~~~d~~g~y~C~~~~~~~~-----~-~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~-~ 249 (371)
.|.+++.+| +|.|.|.+.+. .+ . ....-....+.|.... ..+|.+........ +..|+.+.|.|.+.+ .
T Consensus 82 ~I~~v~~~D-sG~Y~C~~~~~-~~~~~~~~~~~~~~~~t~l~V~~~~-~~~P~i~~~~~~~~-~~~g~~~~l~C~~~~~~ 157 (226)
T 3mlr_H 82 QWTTLQASD-TGKYFCTRLYL-FEGAQSSNAFDLWGQGTMILVSSGT-TKGPSVFPLAPSSK-STSGGTAALGCLVKDYF 157 (226)
T ss_dssp EESSCCGGG-CEEEEEEEEEE-EESSSEEEEEEEECCCEEEEECCCC-CBCCEEEEEEEEEC-STTSSEEEEEEEEEEEB
T ss_pred EECCCCccc-CEEEEEeEccC-CCcccccchhhhhCCccEEeeccCC-CCCCcEEEecCccc-ccCCCCEEEEEEEEEEE
Confidence 999999999 99999999765 21 0 1111111245554321 14555554333333 668999999999987 4
Q ss_pred C-CCceEEEeCCcccccC----------CceEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEE
Q psy14542 250 P-LPTIKWYKQDSPVEES----------DRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLF 305 (371)
Q Consensus 250 p-~~~v~W~~~~~~~~~~----------~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~ 305 (371)
| .+.+.| ++..+..+ +......+.|.|.....+| |.|+|.|.|..+.......
T Consensus 158 p~~~~v~W--~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~ 221 (226)
T 3mlr_H 158 PEPVTVSW--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKK 221 (226)
T ss_dssp SSCCEEEE--GGGTCCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGTEEEEEE
T ss_pred CCCeEEEE--CCccccCCeEeCCcEECCCCCEEEEEEEEECHhHcCC-CeEEEEEEECCCCcCeEEE
Confidence 4 357999 44433211 0111122468899998889 9999999998887554443
No 407
>2aty_A Complement receptor chimeric conjugate CR2-IG; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}
Probab=99.58 E-value=1.4e-14 Score=125.49 Aligned_cols=169 Identities=15% Similarity=0.204 Sum_probs=108.3
Q ss_pred eecCCcEEEEEEecCC---CCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecC
Q psy14542 108 VDVGHRIELHCRVSPK---RLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDES 184 (371)
Q Consensus 108 ~~~g~~v~l~C~~~~~---~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~ 184 (371)
+..|+.++|.|.+.+. +....|+|++++..+...... ...... ++.+. ..+.|.|..++.+
T Consensus 180 ~~~g~~v~L~C~~~g~~P~p~~~~v~W~k~~~~~~~~~~~-----~~~~~~---------~~~~~--~~s~L~I~~~~~~ 243 (376)
T 2aty_A 180 LTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTQ-----PREEQF---------NSTFR--SVSELPIMHQDWL 243 (376)
T ss_pred eeeCCeeEEEEEEeccccCCCccEEEEEECCccccCcccC-----CCCccc---------CCcEE--EEEEEEechHhcc
Confidence 4689999999999887 333589999998654322100 000011 11222 2257999999999
Q ss_pred CccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecC-C-CCceEEEeCCcc
Q psy14542 185 DRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGN-P-LPTIKWYKQDSP 262 (371)
Q Consensus 185 d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-p-~~~v~W~~~~~~ 262 (371)
| .|.|+|.+.+. .+...... .+.+.. ....+|.+...+.... ...|+.++|.|.+.|+ | .+.|+|+++|..
T Consensus 244 D-~g~Y~C~~~~~-~~~~~~~~---~v~~~~-~~~~~P~v~v~~~~~~-~~~g~~~~L~C~~~g~~P~~i~v~W~k~g~~ 316 (376)
T 2aty_A 244 N-GKEFKCRVNSA-AFPAPIEK---TISKTK-GRPKAPQLYTIPPPKE-QMAKDKVSLTCMITDFFPEDITVEWQWNGQP 316 (376)
T ss_pred C-CCEEEEEEecC-CCCCceEE---EEcCCC-CCCcCCeEEeeCCCHH-HhcCCceEEEEEEEEeECCCcEEEEEECCEE
Confidence 9 99999999987 33222211 221100 0115677766655544 4568899999999985 3 458999999987
Q ss_pred cccCCceE---------EecceEEEeccCCCCCeEEEEEEEcCCCC
Q psy14542 263 VEESDRIQ---------RIGSSLSISHVEESDSGVWNCVANNSEGQ 299 (371)
Q Consensus 263 ~~~~~~~~---------~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~ 299 (371)
+....... ...+.|.|.....+|.|.|+|+|.|....
T Consensus 317 ~~~~~~~~~~~~~dgty~~~s~L~i~~~~~~~~~~YtC~v~h~~l~ 362 (376)
T 2aty_A 317 AENYKNTQPIMNTNESYFVYSKLNVQKSNWEAGNTFTCSVLHEGLH 362 (376)
T ss_pred CCCeEeCCceECCCCCEEEEEEEEEcHHHhCCCCcEEEEEEeCCCC
Confidence 64321111 11235777777778899999999987654
No 408
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}
Probab=99.58 E-value=1.6e-14 Score=99.83 Aligned_cols=90 Identities=21% Similarity=0.327 Sum_probs=76.3
Q ss_pred cccceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccCCceEEec----ceEEEeccCCCCCeEEEEEEEc
Q psy14542 220 LSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIG----SSLSISHVEESDSGVWNCVANN 295 (371)
Q Consensus 220 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~----~~l~i~~~~~~d~G~Y~C~a~n 295 (371)
.+|.+...+.... +..|+.+.|.|.+.+.|.+.+.|++++..+....++.... ..|.|.++..+|+|.|+|.|.|
T Consensus 5 ~~P~i~~~~~~~~-v~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n 83 (99)
T 3puc_A 5 SKPVIVTGLQDTT-VSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTVKN 83 (99)
T ss_dssp EEEEEEECCCCEE-EESSSCEEEEEEEEEESCCEEEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred CCCEEEecCccEE-EeCCCcEEEEEEEEecCCCEEEEEECCEECcCCCCEEEEEeCCEEEEEECCCCcccCEEEEEEEEe
Confidence 4566666666666 9999999999999999999999999999888777765332 2799999999999999999999
Q ss_pred CCCCceeEEEEEEec
Q psy14542 296 SEGQDKMQLFIQYAH 310 (371)
Q Consensus 296 ~~g~~~~~~~l~v~~ 310 (371)
..|.....+.|.|..
T Consensus 84 ~~g~~~~~~~l~V~~ 98 (99)
T 3puc_A 84 SAGSVSSSCKLTIKA 98 (99)
T ss_dssp TTEEEEEEEEEEEEC
T ss_pred CCCcEeEEEEEEEEe
Confidence 999998888888753
No 409
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=8.8e-15 Score=103.26 Aligned_cols=93 Identities=19% Similarity=0.272 Sum_probs=77.8
Q ss_pred cccceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEeCCccccc-CCceEEe---cc--eEEEeccCCCCCeEEEEEE
Q psy14542 220 LSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEE-SDRIQRI---GS--SLSISHVEESDSGVWNCVA 293 (371)
Q Consensus 220 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~-~~~~~~~---~~--~l~i~~~~~~d~G~Y~C~a 293 (371)
.+|.+...+.... +..|+.+.|.|.+.+.|.+.+.|++++..+.. ..++... ++ .|.|.++..+|+|.|+|.|
T Consensus 7 ~~P~~~~~~~~~~-v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a 85 (110)
T 2dm2_A 7 GAPFFEMKLKHYK-IFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMA 85 (110)
T ss_dssp CCCCBSSCCCCEE-EETTCCEEEEEEBCCSSCCEEEEECSSCBCCTTCSSEEEEECTTCEEEEEESSCCTTTCSCCEEEE
T ss_pred CCCEEEecCcCeE-EeCCCeEEEEEEEEecCCCEEEEEECCEECCCCCCeEEEEECCCcEEEEEECCCChhhCEEEEEEE
Confidence 4566666666666 99999999999999999999999999998875 3444432 22 6999999999999999999
Q ss_pred EcCCCCceeEEEEEEecCcc
Q psy14542 294 NNSEGQDKMQLFIQYAHGKY 313 (371)
Q Consensus 294 ~n~~g~~~~~~~l~v~~~p~ 313 (371)
.|..|.....+.|.|..+|.
T Consensus 86 ~N~~g~~~~~~~l~V~~~~~ 105 (110)
T 2dm2_A 86 ANPQGRISCTGRLMVQAVNS 105 (110)
T ss_dssp ECTTCCEEECCCEEEECCSC
T ss_pred EECCCeEEEEEEEEEECCCC
Confidence 99999999989999987766
No 410
>3u2s_H PG9 heavy chain; greek KEY, immunoglobulin, immune recognition, immune system; HET: PCA TYS BU3 NAG BMA MAN; 1.80A {Homo sapiens} PDB: 3u4e_H* 3u36_H 3mug_B* 3lrs_H* 3mme_H* 2qsc_H*
Probab=99.58 E-value=6.1e-14 Score=114.20 Aligned_cols=167 Identities=16% Similarity=0.238 Sum_probs=98.6
Q ss_pred eCCCcEEEeccCcEEEEEEecC-CCCCCeeEEEeC--CE---EEee-------------------------CCeeEEEEc
Q psy14542 16 SPSGQVVVDVGHRIELHCRVSP-KRLSSAKAWLKD--GL---VLRR-------------------------NSDEVLVLD 64 (371)
Q Consensus 16 ~p~~~~~~~~G~~v~l~C~~~~-~~~~~~~~W~~~--~~---~~~~-------------------------~~~~~l~i~ 64 (371)
.|.. +.+.+|++++|.|.... ..+...+.|+|. +. .+.. ....+|.|.
T Consensus 5 ~~~~-v~v~~G~~v~L~C~~s~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~ 83 (248)
T 3u2s_H 5 ESGG-GVVQPGSSLRLSCAASGFDFSRQGMHWVRQAPGQGLEWVAFIKYDGSEKYHADSVWGRLSISRDNSKDTLYLQMN 83 (248)
T ss_dssp EECC-EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEEGGGTEEEEEEC
T ss_pred cCCC-EEEeCCCCEEEEEEeccccCCccEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEEC
Confidence 3444 78999999999997653 233467999972 11 1100 034579999
Q ss_pred cCCcCCCeEEEEEEEcCCC----------------------CeEEEEEEEEec---ceeeEe-cCCceeeecCCcEEEEE
Q psy14542 65 RVQREDAGMYQCHVSADDD----------------------SAQMSAQVILGG---ELVEIA-SSNQVVVDVGHRIELHC 118 (371)
Q Consensus 65 ~~~~~d~G~Y~C~~~~~~~----------------------~~~~~~~l~v~~---~~~~~~-~~~~~~~~~g~~v~l~C 118 (371)
+++.+|+|.|.|.+.+..+ .......|.|.. ..|.+. ..+...+..|+.++|.|
T Consensus 84 ~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~P~v~~~~~~~~~~~g~~~~L~C 163 (248)
T 3u2s_H 84 SLRVEDTATYFCVREAGGPDYRNGYNYYDFYDGYYNYHYMDVWGKGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGC 163 (248)
T ss_dssp SCCGGGCEEEEEEEEEEECEEETTEEEECGGGCCEEEEEEEEECCCEEEEECSCCCBCCEEEEECCC------CEEEEEE
T ss_pred CCCHHHCEEEEEEEeCCCCccccccccccccccccccccceeeCCCEEEEEcccCCCCCEEEEeCCCccccCCCcEEEEE
Confidence 9999999999999986310 011224555542 233333 23333346799999999
Q ss_pred EecCC-CCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeecc
Q psy14542 119 RVSPK-RLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNK 197 (371)
Q Consensus 119 ~~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~ 197 (371)
.+.+. |.+..+.|++++..+..... .......| .+... +.|.|.....+| |.|+|.+.+.
T Consensus 164 ~~~~~~P~~~~v~W~~~g~~~~~~~~------~~~~~~~g---------~~~~~--s~L~i~~~~~~~--~~ytC~v~h~ 224 (248)
T 3u2s_H 164 LVKDYFPEPVTVSWNSGALTSGVHTF------PAVLQSSG---------LYSLS--SVVTVPSSSLGT--QTYICNVNHK 224 (248)
T ss_dssp EEEEEBSSCCEEEEGGGTBCTTEEEC------CCEECTTS---------CEEEE--EEEEEEGGGBTT--BCCEEEEEEG
T ss_pred EEeeEECCCeEEEEeECCccCceeec------CceECCCC---------CEEEE--EEEEEChhhcCC--CeEEEEEEEC
Confidence 99874 43478999998853221100 00011222 33322 567777665443 8999999998
Q ss_pred ccceee
Q psy14542 198 LTGASL 203 (371)
Q Consensus 198 ~~~~~~ 203 (371)
.+...
T Consensus 225 -~~~~~ 229 (248)
T 3u2s_H 225 -PSNTK 229 (248)
T ss_dssp -GGTEE
T ss_pred -CCCcc
Confidence 44433
No 411
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=1.4e-14 Score=103.53 Aligned_cols=91 Identities=19% Similarity=0.318 Sum_probs=74.1
Q ss_pred cccceeee---eeeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccCCceEE--e--cceEEEeccCCCCCeEEEEE
Q psy14542 220 LSAAKMFE---KHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQR--I--GSSLSISHVEESDSGVWNCV 292 (371)
Q Consensus 220 ~~p~~~~~---~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~--~--~~~l~i~~~~~~d~G~Y~C~ 292 (371)
.+|.+... ..... +..|+.+.|.|.+.|.|.|.+.|++++..+.. .++.. . ...|.|.++..+|+|.|+|.
T Consensus 20 ~~P~i~~~~~~~~~~~-v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~-~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~ 97 (118)
T 2e7c_A 20 EPPKIRLPRHLRQTYI-RKVGEQLNLVVPFQGKPRPQVVWTKGGAPLDT-SRVHVRTSDFDTVFFVRQAARSDSGEYELS 97 (118)
T ss_dssp EEEEECCCTTTSSCEE-EESSSCEEEEEEEEEESCCEEEEEETTEECCC-SSCEEEECSSEEEEEESSCCTTTCEEEEEE
T ss_pred cCCeEecCcccCCCEE-EECCCEEEEEEEEccCCCCEEEEEECCEECCC-CcEEEEECCCeEEEEECCCChhcCEEEEEE
Confidence 45665432 23344 88999999999999999999999999998863 33332 2 24599999999999999999
Q ss_pred EEcCCCCceeEEEEEEecCc
Q psy14542 293 ANNSEGQDKMQLFIQYAHGK 312 (371)
Q Consensus 293 a~n~~g~~~~~~~l~v~~~p 312 (371)
|.|..|.....+.|.|.++|
T Consensus 98 a~N~~G~~~~~~~l~V~~~P 117 (118)
T 2e7c_A 98 VQIENMKDTATIRIRVVEKA 117 (118)
T ss_dssp EECSSCEECCEEEEEEECCC
T ss_pred EEeCCCeEEEEEEEEEEcCC
Confidence 99999999999999998776
No 412
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Probab=99.57 E-value=1.3e-14 Score=109.02 Aligned_cols=93 Identities=26% Similarity=0.358 Sum_probs=80.4
Q ss_pred cccceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccCCceEEe-----cceEEEeccCCCCCeEEEEEEE
Q psy14542 220 LSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI-----GSSLSISHVEESDSGVWNCVAN 294 (371)
Q Consensus 220 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~-----~~~l~i~~~~~~d~G~Y~C~a~ 294 (371)
.+|.+...+.... +..|+.+.|.|.+.|.|.+.+.|++++..+....++... ...|.|.++..+|+|.|+|.|.
T Consensus 40 ~~P~~~~~~~~~~-v~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~ 118 (154)
T 1fhg_A 40 VKPYFTKTILDME-VVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAV 118 (154)
T ss_dssp EEEEEEECCCCEE-EETTSCEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEECTTCEEEEEESSCCGGGCEEEEEEEE
T ss_pred CCCeEEccCCcEE-EeCCCeEEEEEEEEEecCCEEEEEECCEECCCCCcEEEEECCCCeEEEEECCCChhcCEEEEEEEE
Confidence 5677777666666 999999999999999999999999999998877776643 2489999999999999999999
Q ss_pred cCCCCceeEEEEEEecCcc
Q psy14542 295 NSEGQDKMQLFIQYAHGKY 313 (371)
Q Consensus 295 n~~g~~~~~~~l~v~~~p~ 313 (371)
|..|.....+.|.|..+|.
T Consensus 119 N~~G~~~~~~~l~V~~~p~ 137 (154)
T 1fhg_A 119 NSLGEATCTAELLVETMGK 137 (154)
T ss_dssp ETTEEEEEEEEEEEECC--
T ss_pred ECCCeEEEEEEEEEeCcCc
Confidence 9999999999999998888
No 413
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=1.1e-14 Score=100.45 Aligned_cols=89 Identities=19% Similarity=0.255 Sum_probs=74.8
Q ss_pred cccceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccCCceEEe-c---ceEEEeccCCCCCeEEEEEEEc
Q psy14542 220 LSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI-G---SSLSISHVEESDSGVWNCVANN 295 (371)
Q Consensus 220 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~-~---~~l~i~~~~~~d~G~Y~C~a~n 295 (371)
.+|.+...+.... +..|+.+.|.|.+ .|.+.+.|+++|..+..+.++... + ..|.|.++..+|+|.|+|.|.|
T Consensus 6 ~p~~~~~~~~~~~-v~~G~~v~l~C~v--~p~p~v~W~k~g~~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a~N 82 (100)
T 2yuz_A 6 SGLKILTPLTDQT-VNLGKEICLKCEI--SENIPGKWTKNGLPVQESDRLKVVQKGRIHKLVIANALTEDEGDYVFAPDA 82 (100)
T ss_dssp CCCCCSBCCCCEE-EETTSCCCEEEEC--SSCCCEEEEETTEECCCCSSEEEEECSSEEEEEESSCCGGGCSEEEEEESS
T ss_pred CCCEEeccCCceE-EcCCCCEEEEEEe--CCCCeEEEEECCEECCCCCcEEEEEeCCEEEEEECCCChhhCEEEEEEEcC
Confidence 3556666666666 9999999999999 788999999999999888776632 2 3799999999999999999999
Q ss_pred CCCCceeEEEEEEecCcc
Q psy14542 296 SEGQDKMQLFIQYAHGKY 313 (371)
Q Consensus 296 ~~g~~~~~~~l~v~~~p~ 313 (371)
. ....++.|.|.++|.
T Consensus 83 ~--~~~~~a~L~V~~~P~ 98 (100)
T 2yuz_A 83 Y--NVTLPAKVHVISGPS 98 (100)
T ss_dssp S--CCCEEEEEEEECCSC
T ss_pred C--CeeEEEEEEEeCCCC
Confidence 8 567788899988876
No 414
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}
Probab=99.57 E-value=1.9e-14 Score=99.48 Aligned_cols=90 Identities=22% Similarity=0.391 Sum_probs=74.3
Q ss_pred cccceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccCCceE-E-ecc---eEEEeccCCCCCeEEEEEEE
Q psy14542 220 LSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQ-R-IGS---SLSISHVEESDSGVWNCVAN 294 (371)
Q Consensus 220 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~-~-~~~---~l~i~~~~~~d~G~Y~C~a~ 294 (371)
.+|.+...+.... +..|+.+.|.|.+.|.|.+.+.|++++..+....+.. . .++ +|.|.++..+|+|.|+|.|.
T Consensus 4 ~~P~~~~~~~~~~-v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~ 82 (99)
T 1u2h_A 4 APPTFKVSLMDQS-VREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGFYTCKAV 82 (99)
T ss_dssp EEEEEEECCCCEE-EETTCCEEEEEEEEEESCCEEEEEETTEECCCBTTEEEEECGGGEEEEEESSCCGGGCEEEEEEEE
T ss_pred CCCEEEEcCCceE-ecCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCCEEEEECCCCEEEEEEccCCcCCCEEEEEEEE
Confidence 4566666666666 9999999999999999999999999999887654332 1 122 69999999999999999999
Q ss_pred cCCCCceeEEEEEEec
Q psy14542 295 NSEGQDKMQLFIQYAH 310 (371)
Q Consensus 295 n~~g~~~~~~~l~v~~ 310 (371)
|..|.....+.|.|.+
T Consensus 83 N~~g~~~~~~~l~V~~ 98 (99)
T 1u2h_A 83 NEYGARQCEARLEVRG 98 (99)
T ss_dssp ETTEEEEEEEEEEEEC
T ss_pred ECCCceeEEEEEEEEC
Confidence 9999999898888864
No 415
>3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E
Probab=99.57 E-value=1.6e-14 Score=118.04 Aligned_cols=158 Identities=17% Similarity=0.255 Sum_probs=89.3
Q ss_pred EEEeccCcEEEEEEecCCC-CCCeeEEEeCC--E--E-Ee---------------eC----------CeeEEEEccCCcC
Q psy14542 21 VVVDVGHRIELHCRVSPKR-LSSAKAWLKDG--L--V-LR---------------RN----------SDEVLVLDRVQRE 69 (371)
Q Consensus 21 ~~~~~G~~v~l~C~~~~~~-~~~~~~W~~~~--~--~-~~---------------~~----------~~~~l~i~~~~~~ 69 (371)
+.+.+|++++|.|.+.... ....+.|+|.. . . +. .. ...+|.|.+++.+
T Consensus 10 ~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~ 89 (257)
T 3bn9_D 10 GLVKPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMSSLRAE 89 (257)
T ss_dssp EEECTTCEEEEEEEEESSCGGGCCEEEEEECTTSCEEEEEEECSSSCCEEECGGGTTTEEEEEETTTTEEEEEEESCCGG
T ss_pred EEEcCCCcEEEEEEeccccCCCceEEEEEECCCCCeEEEEEEecCCCceecCcccCCceEEEecCCCCEEEEEECCCChh
Confidence 6899999999999765332 15679999842 1 1 10 00 2468999999999
Q ss_pred CCeEEEEEEEcCCCC---------e----EEEEEEEEec---ceeeEec-CCceeeecCCcEEEEEEecCC-CCCceEEE
Q psy14542 70 DAGMYQCHVSADDDS---------A----QMSAQVILGG---ELVEIAS-SNQVVVDVGHRIELHCRVSPK-RLSSAKAW 131 (371)
Q Consensus 70 d~G~Y~C~~~~~~~~---------~----~~~~~l~v~~---~~~~~~~-~~~~~~~~g~~v~l~C~~~~~-~~~~~v~W 131 (371)
|+|.|.|.+.+..+. . .....|.|.. .+|.+.. .+...+..|+.++|.|.+.+. |.+..+.|
T Consensus 90 DsG~Y~C~~~~~~g~~~~~~~~~~~~~~~~~~t~L~V~~~~~~~P~v~~~~p~~~~~~g~~v~L~C~~~g~~P~pi~v~W 169 (257)
T 3bn9_D 90 DTAVYYCARPYLTYPQRRGPQNVSPFDNWGQGTMVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSW 169 (257)
T ss_dssp GCEEEEEEEECCSSTTSCCCCTTCCEEEECCCEEEEECSSCCBCCEECCCCC-----------CCCEEEEEBSSCCEEEE
T ss_pred hCEEEEEEEecCCCcccccccccceeeeeCCcEEEEecCCCCcCCcEEEecCcccccCCCcEEEEEEEeeEECCCcEEEE
Confidence 999999999976541 1 1235777763 2344433 233334689999999999886 55349999
Q ss_pred eeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeecc
Q psy14542 132 LKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNK 197 (371)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~ 197 (371)
++++..+... .. ... ....| .+.. .+.|.|.+...+| |.|+|.+.|.
T Consensus 170 ~k~g~~~~~~-~~----~~~-~~~~g---------~y~~--~s~L~I~~~~~~~--g~YtC~v~n~ 216 (257)
T 3bn9_D 170 NSGALTSGVH-TF----PAV-LQSSG---------LYSL--SSVVTVPSSSLGT--QTYICNVNHK 216 (257)
T ss_dssp TTTTCCSSCE-EC----CCE-ECTTS---------CEEE--EEECCCC---------CEEEEEEEG
T ss_pred eeCCCcCCcE-ec----CCe-EcCCC---------CEEE--EEEEEEcccccCC--CeEEEEEEec
Confidence 9988753211 00 000 01222 2222 1567777766543 9999999997
No 416
>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X
Probab=99.57 E-value=1.2e-14 Score=103.09 Aligned_cols=79 Identities=19% Similarity=0.389 Sum_probs=69.3
Q ss_pred ecCCeEEEEEEeecCCCCceEEEeCCcccccCCceEE-----------ecceEEEeccCCCCCeEEEEEEEcCCCCceeE
Q psy14542 235 KKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQR-----------IGSSLSISHVEESDSGVWNCVANNSEGQDKMQ 303 (371)
Q Consensus 235 ~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~-----------~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~ 303 (371)
..+..+.|.|.+.|+|.|.|+|++||..+....+... ..+.|.|.++...|+|.|+|.|.|..|....+
T Consensus 13 ~~~~~~~l~c~v~G~P~P~I~W~knG~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~t 92 (126)
T 1he7_A 13 VEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASAS 92 (126)
T ss_dssp CCCCEEEEEEEECCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTEEEEEE
T ss_pred ccCccEEEEEEEeeeCCCeEEEEECCEECCCCCceeEEEeeccccccccceEEEECcCCCCCCEEEEEEEEECCCeEEEE
Confidence 4567899999999999999999999999987765431 13579999999999999999999999999999
Q ss_pred EEEEEecCcc
Q psy14542 304 LFIQYAHGKY 313 (371)
Q Consensus 304 ~~l~v~~~p~ 313 (371)
+.|.|...|.
T Consensus 93 ~~l~v~~~P~ 102 (126)
T 1he7_A 93 IMAAFMDNPF 102 (126)
T ss_dssp EEECCCSCTT
T ss_pred EEEEEEcCCC
Confidence 9999988777
No 417
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A
Probab=99.56 E-value=7.5e-15 Score=102.64 Aligned_cols=89 Identities=29% Similarity=0.534 Sum_probs=76.7
Q ss_pred cccceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccCCceEEe----cceEEEeccCCCCCeEEEEEEEc
Q psy14542 220 LSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI----GSSLSISHVEESDSGVWNCVANN 295 (371)
Q Consensus 220 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~a~n 295 (371)
.+|.+...+.... +..|+.+.|.|.+.|.|.+.+.|++++..+....++... ++.|.|.++..+|+|.|+|.|.|
T Consensus 13 ~~~~i~~~p~~~~-v~~G~~v~L~C~~~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N 91 (106)
T 1nct_A 13 LAARILTKPRSMT-VYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVEN 91 (106)
T ss_dssp CCCEEEECCCCEE-ESSSSCEECCEEEECSSCCBCCBCSSSSCCTTCSSEEEEECSSEEEEEECCCCSSCCSEEEECCBC
T ss_pred CCCEEEECCCCEE-EeCCCcEEEEEEEEEcCCCEEEEEECCEECCCCCCEEEEECCCEEEEEECcCCchhCEEEEEEEEe
Confidence 4556666666666 999999999999999999999999999988877776643 36899999999999999999999
Q ss_pred CCCCceeEEEEEEe
Q psy14542 296 SEGQDKMQLFIQYA 309 (371)
Q Consensus 296 ~~g~~~~~~~l~v~ 309 (371)
..|....++.|.|.
T Consensus 92 ~~G~~~~~~~l~V~ 105 (106)
T 1nct_A 92 SEGKQEAEFTLTIQ 105 (106)
T ss_dssp SSCBCCEEEEEEEC
T ss_pred CCCeEEEEEEEEEE
Confidence 99999999888875
No 418
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.56 E-value=1.2e-14 Score=125.37 Aligned_cols=99 Identities=14% Similarity=0.213 Sum_probs=68.0
Q ss_pred eecCCeEEEEEEeecCCCCceEEEeCCcccccC----CceEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEe
Q psy14542 234 VKKDESVILPCSAQGNPLPTIKWYKQDSPVEES----DRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYA 309 (371)
Q Consensus 234 ~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~----~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 309 (371)
+.+|+.+.|.|.+.| |.|.+.|++++..+... .++...+++|.|.++..+|+|.|+|.|.|..|..+..+.|.|.
T Consensus 258 v~~G~~~~l~C~~~g-p~p~i~W~~~~~~~~~~~~~~~r~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~ 336 (361)
T 2xot_A 258 AHLGDTLTIRCDTKQ-QGMTKVWVSPSNEQVLSQGSNGSVSVRNGDLFFKKVQVEDGGVYTCYAMGETFNETLSVELKVY 336 (361)
T ss_dssp EETTCCEEECCCCSS-TTCEEEEECTTSCBCCSCCSSSSEEEETTEEEESSCCTTSCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred ecCCCeEEEEeEeeC-CCCeEEEEeCCCeeEeecccCCceEeecCeEEEeecCcccCEEEEEEEecCCCccEEEEEEEEE
Confidence 899999999999998 99999999987754332 2555577899999999999999999999999999999988886
Q ss_pred cCcccccccceEEEEeeeeccccccccccccccceeeeeecCCeEEEeeeeecCCCCccc
Q psy14542 310 HGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIK 369 (371)
Q Consensus 310 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~ 369 (371)
..+. +|+.++|.|.+.|.|+|+|+
T Consensus 337 ~~~~------------------------------------~g~~~~l~C~~~g~P~P~i~ 360 (361)
T 2xot_A 337 NFTL------------------------------------HGHHDTLNAAADPWSHPQFE 360 (361)
T ss_dssp SSCC------------------------------------C-------------------
T ss_pred eeec------------------------------------cCCceEEEEEeCCCCCCccc
Confidence 5433 68899999999999999874
No 419
>3n9g_H FAB fragment of MAB CR4354, heavy chain; human neutralizing antibody, immun anti-WEST NIle virus; 1.43A {Homo sapiens} PDB: 3iyw_H 3qeh_A 3sqo_H 4hk0_A 4hk3_J 4hkx_A* 3u0t_D 3c08_H 3lmj_H 3lqa_H* 3c09_H* 4dn3_H 3pp4_H 3pp3_H 4hkb_J 2jb5_H* 2jb6_B* 2eh7_H 2eh8_H 3jwd_H* ...
Probab=99.55 E-value=1.3e-13 Score=111.01 Aligned_cols=171 Identities=15% Similarity=0.213 Sum_probs=102.7
Q ss_pred EEEeccCcEEEEEEecC-CCCCCeeEEEeC--C---EEEee-------------------------CCeeEEEEccCCcC
Q psy14542 21 VVVDVGHRIELHCRVSP-KRLSSAKAWLKD--G---LVLRR-------------------------NSDEVLVLDRVQRE 69 (371)
Q Consensus 21 ~~~~~G~~v~l~C~~~~-~~~~~~~~W~~~--~---~~~~~-------------------------~~~~~l~i~~~~~~ 69 (371)
+.+.+|++++|.|.+.. ......+.|||. + ..+.. ....+|.|.+++.+
T Consensus 10 ~~v~~G~~v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~ 89 (230)
T 3n9g_H 10 EVRKPGASTKVSCKASGYTFTHYYMHWVRQAPGQGLEWMGIINPSGGSTTYAQKLQGRVTMTRDTSTSTVYMELSSLRSE 89 (230)
T ss_dssp EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred EEEcCCCCEEEEEEeecceecCcEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEECCCChh
Confidence 78999999999997653 223467999972 1 11100 03456999999999
Q ss_pred CCeEEEEEEEcCC-----CCe---EEEEEEEEec---ceeeEe-cCCceeeecCCcEEEEEEecCCCC-CceEEEeeCCE
Q psy14542 70 DAGMYQCHVSADD-----DSA---QMSAQVILGG---ELVEIA-SSNQVVVDVGHRIELHCRVSPKRL-SSAKAWLKDGL 136 (371)
Q Consensus 70 d~G~Y~C~~~~~~-----~~~---~~~~~l~v~~---~~~~~~-~~~~~~~~~g~~v~l~C~~~~~~~-~~~v~W~~~~~ 136 (371)
|+|.|.|.+.+.. +.. .....|.|.. .+|.+. ..+...+..|+.++|.|.+.+.++ +..+.| ++.
T Consensus 90 DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~~~~P~~~~v~W--~~~ 167 (230)
T 3n9g_H 90 DTAVYYCARDWGSNYVWGSYPKYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSW--NSG 167 (230)
T ss_dssp GCEEEEEEEECCCSSSTTCCEEEECCCEEEEECSSCCBCCEEEEECCCCCCCTTCEEEEEEEEEEEBSSCCEEEE--GGG
T ss_pred hCEEEEEEEccCCCCcccccccccCCCEEEEEEecCCCCCEEEecCCCccccCCCCEEEEEEEEeEECCCEEEEE--CCc
Confidence 9999999998753 111 1234566641 233333 233333468999999999987533 468999 444
Q ss_pred EeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeee
Q psy14542 137 VLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLT 214 (371)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~ 214 (371)
.+..... .........| .+... +.|.|.....+| |.|+|.+.+. .+...... .+.+.
T Consensus 168 ~~~~~~~----~~~~~~~~~g---------~~~~~--s~L~i~~~~~~~--~~ytC~v~h~-~~~~~~~~---~~~v~ 224 (230)
T 3n9g_H 168 ALTSGVH----TFPAVLQSSG---------LYSLS--SVVTVPSSSLGT--QTYICNVNHK-PSNTKVDK---RVEPK 224 (230)
T ss_dssp TBCTTEE----ECCCEECTTS---------CEEEE--EEEEEESTTBTT--BCCEEEEEEG-GGTEEEEE---ECCCC
T ss_pred ccCCCeE----eCCceECCCC---------CEEEE--EEEEECHHHcCC--CeEEEEEEEC-CCCcceEE---EccCC
Confidence 3321100 0000011223 23222 567777776544 8999999998 54444443 44444
No 420
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing, ATP-binding, calcium, calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Probab=99.55 E-value=3.1e-14 Score=98.56 Aligned_cols=89 Identities=18% Similarity=0.357 Sum_probs=73.3
Q ss_pred cccceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEeCCccccc--CCceEEec----ceEEEeccCCCCCeEEEEEE
Q psy14542 220 LSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEE--SDRIQRIG----SSLSISHVEESDSGVWNCVA 293 (371)
Q Consensus 220 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~--~~~~~~~~----~~l~i~~~~~~d~G~Y~C~a 293 (371)
.+|.+...+.... +..|+.+.|.|.+.+.|.+.+.|++++..+.. ..++.... .+|.|.++..+|+|.|+|.|
T Consensus 4 ~pP~i~~~~~~~~-~~~G~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a 82 (100)
T 3irg_A 4 IPPKIEALPSDIS-IDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTLSL 82 (100)
T ss_dssp EEEEECCCCSEEE-EETTSEEEEEEEEEEESCCEEEEEETTEECCTTGGGTEEEEECSSEEEEEESSCCGGGCEEEEEEE
T ss_pred CCCeeecCCCcEE-EcCCCcEEEEEEEEEcCCCceEEEECCEEeecCCCCEEEEEecCCEEEEEEeecCcccCEEEEEEE
Confidence 3555555555555 89999999999999999999999999988763 34544322 57999999999999999999
Q ss_pred EcCCCCceeEEEEEEe
Q psy14542 294 NNSEGQDKMQLFIQYA 309 (371)
Q Consensus 294 ~n~~g~~~~~~~l~v~ 309 (371)
.|..|.....+.|.|.
T Consensus 83 ~n~~g~~~~~~~l~V~ 98 (100)
T 3irg_A 83 GNEFGSDSATVNIHIR 98 (100)
T ss_dssp EETTEEEEEEEEEEEE
T ss_pred EeCCCcEEEEEEEEEE
Confidence 9999999888888875
No 421
>1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2
Probab=99.54 E-value=2.9e-14 Score=114.89 Aligned_cols=164 Identities=13% Similarity=0.176 Sum_probs=100.6
Q ss_pred EEEeCCCcEEEeccCcEEEEEEecCC-CCCCeeEEEeCC-----EEEe--------------eC----------CeeEEE
Q psy14542 13 IEMSPSGQVVVDVGHRIELHCRVSPK-RLSSAKAWLKDG-----LVLR--------------RN----------SDEVLV 62 (371)
Q Consensus 13 ~~~~p~~~~~~~~G~~v~l~C~~~~~-~~~~~~~W~~~~-----~~~~--------------~~----------~~~~l~ 62 (371)
+...|.. +.+.+|++++|.|.+... .+...+.|+|.. ..+. .. ...+|.
T Consensus 4 v~q~p~~-v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~ 82 (230)
T 1ypz_F 4 LEQPEIS-ISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILT 82 (230)
T ss_dssp EECSCSE-EEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEE
T ss_pred ccccCCE-EEEeCCCcEEEEEEeeccccCccEEEEEEECCCCCCEEEEEEecCCeeecCcccCCeEEEEEcCCCCEEEEE
Confidence 3444555 889999999999976543 145679999832 1110 01 335899
Q ss_pred EccCCcCCCeEEEEEEEcC--CCC-e-EEEEEEEEec----------ceeeEecCCceeeecCCcEEEEEEecCC-CCCc
Q psy14542 63 LDRVQREDAGMYQCHVSAD--DDS-A-QMSAQVILGG----------ELVEIASSNQVVVDVGHRIELHCRVSPK-RLSS 127 (371)
Q Consensus 63 i~~~~~~d~G~Y~C~~~~~--~~~-~-~~~~~l~v~~----------~~~~~~~~~~~~~~~g~~v~l~C~~~~~-~~~~ 127 (371)
|.+++.+|+|.|.|.+.+. ... . .....|.|.. ..+.+.......+..|+.++|.|.+.+. |.++
T Consensus 83 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~l~~~~~p~~~v~~p~~~~v~~g~~~~L~C~~~g~~P~~~ 162 (230)
T 1ypz_F 83 IYSLEEEDEAIYYCSYGEGSSGFHKVFAEGTKLIVIPSDKRLDADISPKPTIFLPSVAETNLHKTGTYLCLLEAFFPDVI 162 (230)
T ss_dssp ECSCCGGGCSEEEEEECCTTTCCCCEECSCEEEEEECCCTTCCSCCSCCCCEECCCHHHHHHHSCEEEEEEEEEESSCCC
T ss_pred ECcCChhhCEEEEEEEECCCCCcccccCCCEEEEEecccccCcccCCCCceEECCCchhhccCCcceEEEEEeeecCCCe
Confidence 9999999999999999874 111 1 1234666641 1112222111122468999999999876 5446
Q ss_pred eEEEee-CCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeecc
Q psy14542 128 AKAWLK-DGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNK 197 (371)
Q Consensus 128 ~v~W~~-~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~ 197 (371)
.+.|++ ++..+....... .. .. ++.+... +.|.|..... .|.|+|.+.+.
T Consensus 163 ~v~W~~~~g~~l~~~~~~~-----~~-~~---------~~~~~~~--s~L~i~~~~~---~~~ytC~v~~~ 213 (230)
T 1ypz_F 163 RVYWKEKDGNTILDSQEGD-----TL-KT---------NDTYMKF--SWLTVPERAM---GKEHRCIVKHE 213 (230)
T ss_dssp EEEEECTTSSCBCCCEECC-----CE-EE---------TTEEEEE--EEEEECGGGT---TSCEEEEEECS
T ss_pred EEEEEccCCeEccccccce-----ee-cC---------CCCEEEE--EEEEEEhhhC---CCEEEEEEEEC
Confidence 999999 776554321100 00 11 2233222 5677766653 38999999987
No 422
>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=2.8e-14 Score=98.48 Aligned_cols=79 Identities=20% Similarity=0.464 Sum_probs=72.1
Q ss_pred eecCCeEEEEEEeecCCCCceEEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEecCcc
Q psy14542 234 VKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKY 313 (371)
Q Consensus 234 ~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~ 313 (371)
+..|+.+.|.|.+.+.| +.+.|++++..+....++...++.|.|.++..+|+|.|+|.|.|..|.....+.|.|...+.
T Consensus 15 v~~G~~v~L~C~~~g~p-p~i~W~k~g~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~ 93 (99)
T 2cr3_A 15 VHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTRITGEEVEVQDSVPADSGLYACVTSSPSGSDTTYFSVNVSDALP 93 (99)
T ss_dssp BCTTSCEEEECCCCSSC-CEEEEEESSSBCCCCSSEEECSSEEEETTCCTTTCEEEEEEEEETTEEEEEEEEECBCSCCS
T ss_pred EeCCCcEEEEEEecCCC-CeEEEEECCEECCCCCcEEEECCEEEEccCCHHHCEEEEEEEEeCCceEEEEEEEEEecCCC
Confidence 88999999999999877 79999999999887777777788999999999999999999999999998889998887765
No 423
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=9.7e-15 Score=103.08 Aligned_cols=93 Identities=23% Similarity=0.411 Sum_probs=78.7
Q ss_pred cccceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccCCceEE---e--cceEEEeccCCCCCeEEEEEEE
Q psy14542 220 LSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQR---I--GSSLSISHVEESDSGVWNCVAN 294 (371)
Q Consensus 220 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~---~--~~~l~i~~~~~~d~G~Y~C~a~ 294 (371)
.+|.+...+.... +..|+.+.|.|.+.+.|.+.+.|++++..+....+... . ..+|.|.++..+|+|.|+|.|.
T Consensus 8 ~~P~i~~~~~~~~-v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~ 86 (110)
T 2dm3_A 8 FRPHFLQAPGDLT-VQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRDAGIYTCIAT 86 (110)
T ss_dssp CCCEEEECCCEEE-EESSSCBCCEEEEECSSCCEEECBBSSSBCCCCSSEEEEECTTSCEEEEESSCCGGGCSBBCEEEE
T ss_pred CCCcEEeCCCcEE-EeCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCceEEEEecCCeEEEEEeeCCcccCEEEEEEEE
Confidence 4666766666666 99999999999999999999999999998876654331 1 2379999999999999999999
Q ss_pred cCCCCceeEEEEEEecCcc
Q psy14542 295 NSEGQDKMQLFIQYAHGKY 313 (371)
Q Consensus 295 n~~g~~~~~~~l~v~~~p~ 313 (371)
|..|.....+.|.|..+|.
T Consensus 87 n~~g~~~~~~~l~V~~~p~ 105 (110)
T 2dm3_A 87 NRAGQNSFSLELVVAAKES 105 (110)
T ss_dssp CSSCEEEECCEEEEECCCC
T ss_pred CCCCEEEEEEEEEEeCCCC
Confidence 9999999999999988776
No 424
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}
Probab=99.54 E-value=7e-14 Score=96.12 Aligned_cols=78 Identities=17% Similarity=0.281 Sum_probs=69.3
Q ss_pred eecCCeEEEEEEeecC-CCCceEEEeCCcccccCCceEE--ecc--eEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEE
Q psy14542 234 VKKDESVILPCSAQGN-PLPTIKWYKQDSPVEESDRIQR--IGS--SLSISHVEESDSGVWNCVANNSEGQDKMQLFIQY 308 (371)
Q Consensus 234 ~~~g~~~~l~C~~~~~-p~~~v~W~~~~~~~~~~~~~~~--~~~--~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 308 (371)
+..|+.+.|.|.+.+. |.+.+.|++++..+....++.. .++ .|.|.++..+|+|.|+|.|.|..|.....+.|.|
T Consensus 13 v~~G~~v~l~C~~~g~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V 92 (97)
T 2bk8_A 13 GEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKDITKLDDGTYRCKVVNDYGEDSSYAELFV 92 (97)
T ss_dssp ECTTCCEEEEEEEESCCTTCEEEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred EcCCCcEEEEEEEeccCCCCEEEEEECCEECcCCCCEEEEEcCCeEEEEEecCChhhCeEEEEEEECCCCeEeEEEEEEE
Confidence 8999999999999997 8899999999998887777653 334 8999999999999999999999999999999888
Q ss_pred ecC
Q psy14542 309 AHG 311 (371)
Q Consensus 309 ~~~ 311 (371)
.+.
T Consensus 93 ~~~ 95 (97)
T 2bk8_A 93 KGV 95 (97)
T ss_dssp TTT
T ss_pred Eec
Confidence 653
No 425
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}
Probab=99.53 E-value=1.5e-13 Score=129.88 Aligned_cols=165 Identities=13% Similarity=0.146 Sum_probs=107.5
Q ss_pred CCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCcccee
Q psy14542 111 GHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSY 190 (371)
Q Consensus 111 g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y 190 (371)
+..+.|.|.+.+.|. +.+.|.++|..+...... .+.|..+...+..+.|
T Consensus 91 ~g~l~v~c~~~g~P~-p~i~W~k~g~~~~~~~~~------------------------------~~~i~~~~~~~~~l~~ 139 (731)
T 2v5y_A 91 PGLLNVYVKVNNGPL-GNPIWNISGDPTRTWNRA------------------------------ELAISTFWPNFYQVIF 139 (731)
T ss_dssp SEEEEEEEEETTCCC-CSEEEEECCCCCSSCEEE------------------------------EEEECCCTTSCEEEEE
T ss_pred cceEEEEEecCCCCc-cceeEEEeCCcCCceeEE------------------------------EEEEeecCCCceEEEE
Confidence 358899999999887 899999999765432221 1222221111112445
Q ss_pred EEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecCCCCceE-EE--eCCcccccCC
Q psy14542 191 QCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIK-WY--KQDSPVEESD 267 (371)
Q Consensus 191 ~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~-W~--~~~~~~~~~~ 267 (371)
.|.+.+. .|..... .+.+.......+|.+. .+.... +..|+.+.|.|.+.|.|.|.+. |+ ++|..+....
T Consensus 140 ~~va~~~-~G~~~~~----~v~~~~~~~~~~p~~~-~~~~~~-v~~G~~v~l~C~~~g~P~p~i~~W~~~~~g~~l~~~~ 212 (731)
T 2v5y_A 140 EVITSGH-QGYLAID----EVKVLGHPCTRTPHFL-RIQNVE-VNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKE 212 (731)
T ss_dssp EEEECSS-CCEEEEC----CBEEESSCCSSSCEEC-CCCCEE-EETTSCEEEEEEEESCCCTTCEEEEEESSSCCEEEEE
T ss_pred EEEecCC-ceEEEEe----eEEeeecccccccccc-cccceE-EeCCCcEEEEEEeCCCCCCceeEEEecCCCccccccc
Confidence 5544433 3322211 1222211111455555 344455 9999999999999999999987 88 6777665432
Q ss_pred ceE----EecceEEEeccCCCCCeEEEEEEEcCCCC-ceeEEEEEEecCcc
Q psy14542 268 RIQ----RIGSSLSISHVEESDSGVWNCVANNSEGQ-DKMQLFIQYAHGKY 313 (371)
Q Consensus 268 ~~~----~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~-~~~~~~l~v~~~p~ 313 (371)
... ...+.|.|.++...|.|.|+|.|.|..|. .+..+.|.|..+|.
T Consensus 213 ~~~~~~~~~~~~l~I~~~~~~d~g~Y~c~A~n~~G~~~s~~~~l~V~~~P~ 263 (731)
T 2v5y_A 213 IKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKEPPV 263 (731)
T ss_dssp EEECCSSEEEEEEEECSCCTTTCEEEEEEEEETTEEEECCCEEEEEECCCC
T ss_pred eEEeccccceEEEEEcccccccCeEEEEEEECCCCCcceeeEEEEEecCCC
Confidence 211 12368999999999999999999999998 67778888887776
No 426
>3iu4_H CHP3 FAB heavy chain; antibody, ganglioside, idiotype, immune system; 1.75A {Mus musculus} PDB: 1ibg_H* 3iy6_B
Probab=99.52 E-value=6.3e-14 Score=115.12 Aligned_cols=161 Identities=16% Similarity=0.201 Sum_probs=93.4
Q ss_pred EEEeccCcEEEEEEecCC-CCCCeeEEEeCC-----EEEee------------------------CCeeEEEEccCCcCC
Q psy14542 21 VVVDVGHRIELHCRVSPK-RLSSAKAWLKDG-----LVLRR------------------------NSDEVLVLDRVQRED 70 (371)
Q Consensus 21 ~~~~~G~~v~l~C~~~~~-~~~~~~~W~~~~-----~~~~~------------------------~~~~~l~i~~~~~~d 70 (371)
+.+.+|++++|.|.+... .....+.|||.. ..+.. ....+|.|.+++.+|
T Consensus 10 v~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~D 89 (263)
T 3iu4_H 10 GLVAPSQSLSITCTVSGFSLSRYSVHWVRQPPGKGLEWLGMIWGGGSTDYNSALKSRLSISKDNSKSQVFLKMNSLQTDD 89 (263)
T ss_dssp SEECTTSCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTSCEEECGGGTTCEEEEEEGGGTEEEEEECSCCGGG
T ss_pred EEEcCCCCEEEEEEeccccCCceEEEEEEECCCCCcEEEEEEeCCCcEeeCcccCCCEEEEecCCCCEEEEEECCCCHHH
Confidence 689999999999976532 224679999721 11100 044569999999999
Q ss_pred CeEEEEEEEcCCC------C--eEEEEEEEEec---ceeeEe-cCCceeeecCCcEEEEEEecCCCC-CceEEEeeCCEE
Q psy14542 71 AGMYQCHVSADDD------S--AQMSAQVILGG---ELVEIA-SSNQVVVDVGHRIELHCRVSPKRL-SSAKAWLKDGLV 137 (371)
Q Consensus 71 ~G~Y~C~~~~~~~------~--~~~~~~l~v~~---~~~~~~-~~~~~~~~~g~~v~l~C~~~~~~~-~~~v~W~~~~~~ 137 (371)
+|.|.|.+.+..+ . ......|.|.. .+|.+. ..+...+..|+.++|.|.+.+..+ ++.++| ++..
T Consensus 90 sG~Y~C~~~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~~~~P~~~~v~W--~~~~ 167 (263)
T 3iu4_H 90 TAMYYCARSGVREGRAQAWFAYWGQGTLVTVSAASTKGPSVFPLAPSSKGSTSGTAALGCLVKDYFPEPVTVSW--NSGA 167 (263)
T ss_dssp CEEEEEEEEECC---CEEEEEEECCCEEEEECSSCCBCCEEEEECCCCCC----EEEEEEEEEEEBSSCCEEEE--GGGT
T ss_pred CEEEEEEEEeCCCCccccccceeCCceEEEEecccCCCCEEEEccCccccccCCcEEEEEEEEeEeCCceEEEE--CCcc
Confidence 9999999986531 0 01224566642 233333 233333458999999999987543 378999 3332
Q ss_pred eeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccce
Q psy14542 138 LRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGA 201 (371)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~ 201 (371)
+.... ..........| .+... +.|.|.....+| |.|+|.+.+. .+.
T Consensus 168 ~~~~~----~~~~~~~~~~g---------~~~~~--s~L~i~~~~~~~--~~ytC~v~h~-~~~ 213 (263)
T 3iu4_H 168 LTSGV----HTFPAVLQSSG---------LYSLS--SVVTVPSSSLGT--QTYICNVNHK-PSN 213 (263)
T ss_dssp BCTTE----EECCCEECTTS---------CEEEE--EEEEEETTHHHH--CCCEEEEEEG-GGT
T ss_pred cCCce----eecCceECCCC---------CEEEE--EEEEECHhHcCC--CEEEEEEEEC-CCC
Confidence 22110 00001111223 33222 567777665433 8999999998 443
No 427
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0
Probab=99.52 E-value=2.1e-14 Score=100.98 Aligned_cols=92 Identities=25% Similarity=0.465 Sum_probs=65.3
Q ss_pred eeeEEecccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC-------CeeEEEEccCCcCCCeEE
Q psy14542 2 QLFIQVKSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN-------SDEVLVLDRVQREDAGMY 74 (371)
Q Consensus 2 ~~~~~v~~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~-------~~~~l~i~~~~~~d~G~Y 74 (371)
+|.|.+..+|.+...|.. ..+.+|+.+.|.|. ..+.|.+.+.|++++..+... ...+|.|.+++.+|+|.|
T Consensus 2 ~~~v~~~~~P~~~~~~~~-~~v~~G~~v~l~C~-~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y 79 (108)
T 3kvq_A 2 QLTVLERVAPTITGNLEN-QTTSIGESIEVSCT-ASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLY 79 (108)
T ss_dssp ---------CCCBSCCCC-EEEETTCCEEEECB-CC----CCEEEEESSSBCCCBTTEEEETTTTEEEECSCCGGGCEEE
T ss_pred ceeECccCCCceecCCCC-eEEeCCCeEEEEEE-CcCcCCCeEEEEECCeEcccCCCeEEeCCCcEEEEeecCcccCEEE
Confidence 356677778888888887 89999999999995 457788899999988766533 457899999999999999
Q ss_pred EEEEEcCCCCeEEEEEEEEec
Q psy14542 75 QCHVSADDDSAQMSAQVILGG 95 (371)
Q Consensus 75 ~C~~~~~~~~~~~~~~l~v~~ 95 (371)
+|.+.|..|.....+.|.|..
T Consensus 80 ~C~a~n~~g~~~~~~~l~V~~ 100 (108)
T 3kvq_A 80 TCQACSVLGCAKVEAFFIIEG 100 (108)
T ss_dssp EEEEC----CEEEEEEEEEEC
T ss_pred EEEEEeCCCceEEEEEEEEeC
Confidence 999999999998899998883
No 428
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A
Probab=99.52 E-value=1.1e-13 Score=97.19 Aligned_cols=88 Identities=16% Similarity=0.232 Sum_probs=69.1
Q ss_pred ccceeeeeeeeeeeecCCeEEEEEEeecCCC---CceEEEeCCcccc---cCCceEE----------ecceEEEeccCCC
Q psy14542 221 SAAKMFEKHRILNVKKDESVILPCSAQGNPL---PTIKWYKQDSPVE---ESDRIQR----------IGSSLSISHVEES 284 (371)
Q Consensus 221 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~---~~v~W~~~~~~~~---~~~~~~~----------~~~~l~i~~~~~~ 284 (371)
.|.+...+.... +..|+.++|.|.+.|.|. |.+.|++++.... ...++.. ....|.|.++..+
T Consensus 4 ~p~f~~~p~~~~-v~~G~~v~L~C~~~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~ 82 (108)
T 3cx2_A 4 IGLFVMRPQDGE-VTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPA 82 (108)
T ss_dssp CCSCSBCCCCEE-EETTCCEEEEEEEECC-CCSCCEEEEEETTTEEGGGGCBTTEEEEEEEETTTTEEEEEEEECSCCGG
T ss_pred ccEEEeCCCcEE-EeCCCCEEEEEEECCCccCCCcEEEEccCCcccccccCCceEEEeeEEecccccceEEEEEecCCCc
Confidence 455666666666 999999999999999988 9999999773211 1123321 2457999999999
Q ss_pred CCeEEEEEEEcCCCCceeEEEEEEe
Q psy14542 285 DSGVWNCVANNSEGQDKMQLFIQYA 309 (371)
Q Consensus 285 d~G~Y~C~a~n~~g~~~~~~~l~v~ 309 (371)
|+|.|+|.|.|..|....++.|.|.
T Consensus 83 D~G~Y~C~a~N~~G~~~~~~~L~V~ 107 (108)
T 3cx2_A 83 FTGSYRCEVSTKDKFDCSNFNLTVH 107 (108)
T ss_dssp GCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred cCEEEEEEEecCCCceEEEEEEEEe
Confidence 9999999999999999999999885
No 429
>4hwu_A Fibroblast growth factor receptor 2; FGFR2, KGFR, CD332, IG-C2 type 1 domain, IG superfamily, IMM system, structural genomics, PSI-biology; 2.90A {Mus musculus}
Probab=99.52 E-value=7.5e-14 Score=95.53 Aligned_cols=78 Identities=23% Similarity=0.411 Sum_probs=70.4
Q ss_pred eecCCeEEEEEEeecCCCCceEEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEecCcc
Q psy14542 234 VKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKY 313 (371)
Q Consensus 234 ~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~ 313 (371)
+..|+.+.|.|.+.+ .|.+.|+++|..+....++...++.|.|.++..+|+|.|+|.|.|..|.....+.|.|.+++.
T Consensus 13 v~~G~~~~l~C~~~~--~p~v~W~k~g~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~ 90 (95)
T 4hwu_A 13 VAPGESLELQCMLKD--AAVISWTKDGVHLGPNNRTVLIGEYLQIKGATPRDSGLYACTAARTVDSETWIFMVNVTDAAE 90 (95)
T ss_dssp ECTTSCEEEECCCCT--TCEEEEEETTEEECCCSSEEEETTEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEECCC--
T ss_pred ECCCCEEEEEEEeCC--CCEEEEEECCEECCCCceEEEeCCEEEECcCCcccCEEEEEEEccCCCcEEEEEEEEEeCCcc
Confidence 889999999999886 579999999999988888888888999999999999999999999999999999999987765
No 430
>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody, immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2qej_A*
Probab=99.52 E-value=1.5e-15 Score=120.97 Aligned_cols=167 Identities=14% Similarity=0.221 Sum_probs=100.7
Q ss_pred eecCCcEEEEEEecCCCC--CceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCC
Q psy14542 108 VDVGHRIELHCRVSPKRL--SSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESD 185 (371)
Q Consensus 108 ~~~g~~v~l~C~~~~~~~--~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d 185 (371)
+.+|+.++|.|.+.+.++ ++.+.| + +....... .........| ++. ....|.|.++..+|
T Consensus 16 v~~G~~v~L~C~~~g~~p~~~~~v~W-~-~~~~~~~~-----~~~~~~~~~g---------~~~--~~~~L~I~~~~~~D 77 (214)
T 1ow0_A 16 LLLGSEANLTCTLTGLRDASGVTFTW-T-PSSGKSAV-----QGPPERDLCG---------CYS--VSSVLPGCAEPWNH 77 (214)
T ss_dssp HHHCSSCCCEEEETTCCSCCCCCCCB-S-SCSSCCCE-----ECCCCCCSTT---------CCC--EEEECTTTHHHHHH
T ss_pred hccCCCcEEEEEEeeeECCCCeEEEE-c-CCCCCCcc-----cCCceECCCC---------cEE--EEEEEEEeHHHcCC
Confidence 478999999999988754 268999 3 33222110 0000001122 221 22568888888999
Q ss_pred ccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecC-CC-CceEEEeCCccc
Q psy14542 186 RYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGN-PL-PTIKWYKQDSPV 263 (371)
Q Consensus 186 ~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-~~v~W~~~~~~~ 263 (371)
.|.|.|.+.+. .+...... .+.+ .....+|.+.........+..|+.+.|.|.+.|. |. +.|.|+++|..+
T Consensus 78 -~g~Y~C~~~~~-~~~~~~~~---~i~~--~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l 150 (214)
T 1ow0_A 78 -GKTFTCTAAYP-ESKTPLTA---TLSK--SGNTFRPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQEL 150 (214)
T ss_dssp -TCEEEEEECCS-SCSSCEEE---EEEC--CSSCCCCEEEEECCCTTTTTSSSEEEEEEEEEEESSSCCEEEEEETTEEC
T ss_pred -CCeEEEEEecC-CCCCceeE---eecc--CCCCCCCEEEecCCCHHHhccCCceEEEEEEeeeECCCcEEEEEECCEEC
Confidence 99999999987 43222111 2221 0011556655433221115678999999999984 54 489999999887
Q ss_pred ccCCc----eE-E---ecce------EEEeccCCCCCeEEEEEEEcCCCC
Q psy14542 264 EESDR----IQ-R---IGSS------LSISHVEESDSGVWNCVANNSEGQ 299 (371)
Q Consensus 264 ~~~~~----~~-~---~~~~------l~i~~~~~~d~G~Y~C~a~n~~g~ 299 (371)
..... .. . .+++ |.+.....+|.|.|+|+|.|....
T Consensus 151 ~~~~~~~~~~~~~~~~~dgt~~~~s~l~v~~~~~~~~~~ytC~v~n~~l~ 200 (214)
T 1ow0_A 151 PREKYLTWASRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCMVGHEALP 200 (214)
T ss_dssp CGGGSEECCCEECSCSSSCCEEEEEEEEEEHHHHHHTCCEEEEEECTTCT
T ss_pred CCCceeecCCcccccCCCCcEEEEEEEEECHHHccCCCEEEEEEECCCCC
Confidence 65421 11 1 2333 344444445689999999997754
No 431
>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}
Probab=99.52 E-value=5.5e-14 Score=93.12 Aligned_cols=73 Identities=21% Similarity=0.370 Sum_probs=61.8
Q ss_pred eecCCeEEEEEEeecCCCCceEEEeCCcccccCCceEEe----cceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEe
Q psy14542 234 VKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI----GSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYA 309 (371)
Q Consensus 234 ~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 309 (371)
+.+|+.+.|.|.+.+ |.|.+.|++||..+..+.++... ..+|.|.++..+|+|.|+|.| |....++.|.|.
T Consensus 8 ~~~G~~v~l~C~vs~-p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a----~n~~~~a~l~V~ 82 (84)
T 2lu7_A 8 STPGGDLELVVHLSG-PGGPVRWYKDGERLASQGRVQLEQAGARQVLRVQGARSGDAGEYLCDA----PQDSRIFLVSVE 82 (84)
T ss_dssp ECTTSCEEEECCCSC-CSTTCEEEETTEECCCCSSEEEEECSSCEEEEESSCSSTTCEEEEEEC----TTTCEEEEEEEC
T ss_pred EecCCCEEEEEEECC-CCcEEEEEECCEEccccccEEEeecCCeEEEEecCCCCcccEEEEEEE----CCEEEEEEEEEE
Confidence 889999999999865 88999999999999888877632 236999999999999999998 446677888887
Q ss_pred cC
Q psy14542 310 HG 311 (371)
Q Consensus 310 ~~ 311 (371)
+|
T Consensus 83 eP 84 (84)
T 2lu7_A 83 EP 84 (84)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 432
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=99.51 E-value=7e-14 Score=99.22 Aligned_cols=88 Identities=16% Similarity=0.227 Sum_probs=69.0
Q ss_pred cceeeeeeeeeeeecCCeEEEEEEeecC---CCCceEEEeCCccc-c--cCCceEE----------ecceEEEeccCCCC
Q psy14542 222 AAKMFEKHRILNVKKDESVILPCSAQGN---PLPTIKWYKQDSPV-E--ESDRIQR----------IGSSLSISHVEESD 285 (371)
Q Consensus 222 p~~~~~~~~~~~~~~g~~~~l~C~~~~~---p~~~v~W~~~~~~~-~--~~~~~~~----------~~~~l~i~~~~~~d 285 (371)
+.|...+.... +.+|++++|.|.+.+. |.|.|.|+|+.... . .+.++.. ....|.|.++..+|
T Consensus 8 ~~F~~~P~~v~-V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D 86 (126)
T 2dav_A 8 ILFIEKPQGGT-VKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNF 86 (126)
T ss_dssp CSCCSCCCCCE-EETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTS
T ss_pred cEEEEcCCCeE-EeCCCCEEEEEEEeccCCCCCCcEEEeeCcCcccCCCCCceEEEccccccccccceEEEEEccCCccc
Confidence 44555565666 9999999999999874 88999999974211 1 1222321 24679999999999
Q ss_pred CeEEEEEEEcCCCCceeEEEEEEec
Q psy14542 286 SGVWNCVANNSEGQDKMQLFIQYAH 310 (371)
Q Consensus 286 ~G~Y~C~a~n~~g~~~~~~~l~v~~ 310 (371)
+|.|+|+|.|..|....++.|.|..
T Consensus 87 aG~Y~Cevsn~~g~~~~~~~L~V~~ 111 (126)
T 2dav_A 87 AGNYRCEVTYKDKFDSCSFDLEVHE 111 (126)
T ss_dssp CEEEEEEEECSSCEEEECCEEEEEC
T ss_pred CEEEEEEEEeCCCcEEEEEEEEEEe
Confidence 9999999999999999999999998
No 433
>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4
Probab=99.51 E-value=7e-14 Score=99.92 Aligned_cols=90 Identities=17% Similarity=0.295 Sum_probs=73.2
Q ss_pred cccceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccCCceEE--------ecceEEEeccCCCCCeEEEE
Q psy14542 220 LSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQR--------IGSSLSISHVEESDSGVWNC 291 (371)
Q Consensus 220 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~--------~~~~l~i~~~~~~d~G~Y~C 291 (371)
.+|.+..... ........|.|.+.|.|.|.+.|+++|..+..+.+... ..+.|.|.++..+|+|.|+|
T Consensus 7 ~pP~i~~~~~----~~~~~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C 82 (118)
T 1wwc_A 7 YPPRVVSLEE----PELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTL 82 (118)
T ss_dssp CCCCCCCCCC----CCCCCEEEEEEEEECSSCCEEEEEETTEECCCSSSEEEEEEECSSEEEEEEEEESCCGGGCEEEEE
T ss_pred cCCceeccCC----CeeccceEEEEEeeeeCCCeEEEEECCEECCCCCceeEEEeccCccccEEEEECCCChhcCEEEEE
Confidence 5666554422 22236678999999999999999999998887765442 35689999999999999999
Q ss_pred EEEcCCCCceeEEEEEEecCcc
Q psy14542 292 VANNSEGQDKMQLFIQYAHGKY 313 (371)
Q Consensus 292 ~a~n~~g~~~~~~~l~v~~~p~ 313 (371)
.|.|..|....++.|.|...|.
T Consensus 83 ~a~N~~G~~~~~~~l~v~~~P~ 104 (118)
T 1wwc_A 83 IAKNPLGTANQTINGHFLKEPF 104 (118)
T ss_dssp EEEETTEEEEEEEEECCSCCCC
T ss_pred EEECCCCeEeeEEEEEEccCCC
Confidence 9999999999999999888776
No 434
>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A
Probab=99.51 E-value=1.6e-13 Score=93.04 Aligned_cols=85 Identities=15% Similarity=0.096 Sum_probs=68.1
Q ss_pred cccceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccCCceEEe--c--ceEEEeccCCCCCeEEEEEEEc
Q psy14542 220 LSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI--G--SSLSISHVEESDSGVWNCVANN 295 (371)
Q Consensus 220 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~--~--~~l~i~~~~~~d~G~Y~C~a~n 295 (371)
.+|.+...+.+.. +.+|+.+.|.|.+.+ +.+.+.|+++|..+..+.++... + .+|.|.++..+|+|.|+|.|.|
T Consensus 4 ~~~~~~~~~~~~~-v~~G~~v~l~C~v~~-~~~~v~W~k~g~~i~~~~~~~i~~~g~~~~L~I~~v~~~D~G~Y~C~a~n 81 (93)
T 1waa_A 4 ALIEVEKPLYGVE-VFVGETAHFEIELSE-PDVHGQWKLKGQPLAASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAAN 81 (93)
T ss_dssp CCCCEEECCCCEE-EETTSCEEEEEEESS-SSCCCEEEETTEECCCBTTEEEEEETTEEEEEECSCCGGGCEEEEEEETT
T ss_pred CCcEeeccCcceE-EeCCCCEEEEEEECC-CCCeEEEEECCEECcCCCCEEEEEECCEEEEEECCCChhhCEEEEEEECC
Confidence 4566666666666 999999999999976 55789999999999888777632 2 3799999999999999999987
Q ss_pred CCCCceeEEEEEEec
Q psy14542 296 SEGQDKMQLFIQYAH 310 (371)
Q Consensus 296 ~~g~~~~~~~l~v~~ 310 (371)
. ..++.|.|.+
T Consensus 82 ~----~~sa~L~V~~ 92 (93)
T 1waa_A 82 T----KSAANLKVKE 92 (93)
T ss_dssp E----EEEEEEEEEC
T ss_pred C----cEEEEEEEEc
Confidence 4 4566677654
No 435
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4
Probab=99.50 E-value=1.3e-13 Score=95.17 Aligned_cols=84 Identities=18% Similarity=0.215 Sum_probs=71.5
Q ss_pred ccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC----------CeeEEEEccCCcCCCeEEEEEE
Q psy14542 9 SSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN----------SDEVLVLDRVQREDAGMYQCHV 78 (371)
Q Consensus 9 ~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~----------~~~~l~i~~~~~~d~G~Y~C~~ 78 (371)
.+|.+...|.. ..+.+|+.+.|.|.+ .+.|.+.+.|++++..+... ...+|.|.+++.+|+|.|+|.+
T Consensus 4 ~~P~~~~~~~~-~~v~~G~~v~l~C~~-~g~p~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a 81 (99)
T 1g1c_A 4 EAPKIFERIQS-QTVGQGSDAHFRVRV-VGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKA 81 (99)
T ss_dssp EEEEEEECCCC-EEEETTSCEEEEEEE-EEESCCEEEEEETTEECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEE
T ss_pred CCCceEecCcc-eEEcCCCcEEEEEEE-EEeCCCEEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCCcCCCEEEEEEE
Confidence 35777777877 899999999999965 46788999999999877643 3447999999999999999999
Q ss_pred EcCCCCeEEEEEEEEe
Q psy14542 79 SADDDSAQMSAQVILG 94 (371)
Q Consensus 79 ~~~~~~~~~~~~l~v~ 94 (371)
.|..|.....+.|.|.
T Consensus 82 ~N~~g~~~~~~~l~V~ 97 (99)
T 1g1c_A 82 INIAGETSSHAFLLVQ 97 (99)
T ss_dssp EETTEEEEEEEEEEEE
T ss_pred EECCCcEEEEEEEEEe
Confidence 9999888888888876
No 436
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}
Probab=99.50 E-value=1.1e-13 Score=95.79 Aligned_cols=84 Identities=18% Similarity=0.335 Sum_probs=71.5
Q ss_pred ccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC----------CeeEEEEccCCcCCCeEEEEEE
Q psy14542 9 SSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN----------SDEVLVLDRVQREDAGMYQCHV 78 (371)
Q Consensus 9 ~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~----------~~~~l~i~~~~~~d~G~Y~C~~ 78 (371)
.+|.+...|.. ..+.+|++++|.|.+ .+.|.+.+.|++++..+... ...+|.|.+++.+|+|.|+|.+
T Consensus 4 ~~P~~~~~p~~-~~~~~G~~~~l~C~~-~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a 81 (100)
T 2kdg_A 4 GPPRFIQVPEN-MSIDEGRFCRMDFKV-SGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRASDAGAYACVA 81 (100)
T ss_dssp EEEECCCCCCC-EEEETTCCEEEEEEC-EEESCCEEEEEETTEEECCCSSSCEEEETTTEEEEEESSCCGGGCEEEEEEE
T ss_pred CCCeEEeCCCC-EEecCCCEEEEEEEE-EeeCCCEEEEEECCEECcCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEE
Confidence 35677777777 899999999999954 56788899999999887654 2248999999999999999999
Q ss_pred EcCCCCeEEEEEEEEe
Q psy14542 79 SADDDSAQMSAQVILG 94 (371)
Q Consensus 79 ~~~~~~~~~~~~l~v~ 94 (371)
.|..|.....+.|.|.
T Consensus 82 ~n~~g~~~~~~~l~V~ 97 (100)
T 2kdg_A 82 KNRAGEATFTVQLDVL 97 (100)
T ss_dssp EETTEEEEEEEEEEEE
T ss_pred EcCCCeEEEEEEEEEE
Confidence 9999988888888887
No 437
>3sob_H Antibody heavy chain, low-density lipoprotein receptor-related protein; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_B 3uls_H 3ulu_D* 3ulv_D*
Probab=99.50 E-value=1e-12 Score=107.59 Aligned_cols=166 Identities=15% Similarity=0.223 Sum_probs=96.7
Q ss_pred EEEeccCcEEEEEEecCC-CCCCeeEEEeC--C---EEEee-------------------------CCeeEEEEccCCcC
Q psy14542 21 VVVDVGHRIELHCRVSPK-RLSSAKAWLKD--G---LVLRR-------------------------NSDEVLVLDRVQRE 69 (371)
Q Consensus 21 ~~~~~G~~v~l~C~~~~~-~~~~~~~W~~~--~---~~~~~-------------------------~~~~~l~i~~~~~~ 69 (371)
+.+.+|++++|.|..... .....+.|+|. + ..+.. ....+|.|.+++.+
T Consensus 33 ~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~ 112 (256)
T 3sob_H 33 GLVQPGGSLRLSCAASGFTFTNSYIHWVRQAPGKGLEWVGWITPYGGYTNYADSVKGRFTISADTSKNTAYLQMNSLRAE 112 (256)
T ss_dssp CEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCCEEEEEEETTTTEEEECTTTTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred EEEcCCCCEEEEEEeeccccCCCEEEEEEECCCCCcEEEEEEecCCCceecCCCCCCcEEEEEeCCCCEEEEEECCCCcc
Confidence 689999999999976532 23467999972 1 11100 04456999999999
Q ss_pred CCeEEEEEEEcCCC-------C----eEEEEEEEEec---ceeeEe-cCCceeeecCCcEEEEEEecCC-CCCceEEEee
Q psy14542 70 DAGMYQCHVSADDD-------S----AQMSAQVILGG---ELVEIA-SSNQVVVDVGHRIELHCRVSPK-RLSSAKAWLK 133 (371)
Q Consensus 70 d~G~Y~C~~~~~~~-------~----~~~~~~l~v~~---~~~~~~-~~~~~~~~~g~~v~l~C~~~~~-~~~~~v~W~~ 133 (371)
|+|.|.|.+.+..+ . ......|.|.. .+|.+. ..+...+.+|+.++|.|.+.+. |.+..+.|
T Consensus 113 DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~~~~p~~~~v~W-- 190 (256)
T 3sob_H 113 DTAVYYCARGSGHVNAVKNYGYVMDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSW-- 190 (256)
T ss_dssp GCEEEEEEEESSCTTCSSCCTTSEEEECCCEEEEECSSCCBCCEEEEECCC-----TTEEEEEEEEEEEBSSCCEEEE--
T ss_pred cCEEEEEEEecCCCccccccccceeEECCCEEEEEecCCCCCCEEEEECCCcccccCCcEEEEEEEEEEECCCeEEEE--
Confidence 99999999986431 0 11224566642 233333 2333344689999999999874 43478999
Q ss_pred CCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeeccccceeeeee
Q psy14542 134 DGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSV 206 (371)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~ 206 (371)
++..+..... .........| .+... +.|.|.....+| |.|+|.+.+. .+......
T Consensus 191 ~~~~~~~~~~----~~~~~~~~~g---------~~~~~--s~L~i~~~~~~d--~~ytC~v~~~-~~~~~~~~ 245 (256)
T 3sob_H 191 NSGALTSGVH----TFPAVLQSSG---------LYSLS--SVVTVPSSSLGT--QTYICNVNHK-PSNTKVDK 245 (256)
T ss_dssp GGGTBCTTEE----ECCCEECTTS---------CEEEE--EEEEEEGGGTTT--CCCEEEEEEG-GGTEEEEE
T ss_pred CCcccCCCeE----eCCceeCCCC---------CEEEE--EEEEECHHHcCC--ceEEEEEEeC-CCCcceEE
Confidence 4433321100 0000111223 33322 567777765544 8999999998 54443333
No 438
>3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens}
Probab=99.50 E-value=3.4e-13 Score=114.61 Aligned_cols=173 Identities=18% Similarity=0.221 Sum_probs=108.4
Q ss_pred cceEEEeCCCcEEEeccCcEEEEEEecCCC-------------CCCeeEEEeC--CE---EEe-----------------
Q psy14542 10 SLSIEMSPSGQVVVDVGHRIELHCRVSPKR-------------LSSAKAWLKD--GL---VLR----------------- 54 (371)
Q Consensus 10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~-------------~~~~~~W~~~--~~---~~~----------------- 54 (371)
.+.+...+.. +.+.+|++++|.|...... ....+.||+. |+ .+.
T Consensus 158 ~f~V~tq~~s-v~a~~Ge~vtL~C~~S~~~~~~~a~~~~~~~~~~~~V~Wyrq~pg~~~~vliY~~g~~~q~~~~~~g~~ 236 (401)
T 3f8u_B 158 VLTVLTHTPA-PRVRLGQDALLDLSFAYMPPTSEAASSLAPGPPPFGLEWRRQHLGKGHLLLAATPGLNGQMPAAQEGAV 236 (401)
T ss_dssp EEEEEESCSS-CEEETTSCEEECCEEEECCCTTC------CCSCCCEEEEEEEETTEEEEEEEECTTSCCCCCCCCTTCE
T ss_pred EEEEeCCCCc-EEEeCCCCEEEEEeCCCCcccccccccccccCCceEEEEEEecCCCCcEEEEEeCCCccccccccCCeE
Confidence 3445455555 8999999999999765332 1356999861 21 000
Q ss_pred -------------eCCeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEEEEEEecceeeEecCCcee--eecCC-cEEEEE
Q psy14542 55 -------------RNSDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGELVEIASSNQVV--VDVGH-RIELHC 118 (371)
Q Consensus 55 -------------~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~--~~~g~-~v~l~C 118 (371)
...+.+|.|.+++.+|+|.|.|.+.+..+.....+.|.|. .+|.+...+... ...|+ .++|.|
T Consensus 237 ~f~~~~~~~~~g~~~g~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~v~L~V~-~pP~V~v~p~~~~~~~~G~~~vtL~C 315 (401)
T 3f8u_B 237 AFAAWDDDEPWGPWTGNGTFWLPRVQPFQEGTYLATIHLPYLQGQVTLELAVY-KPPKVSLMPATLARAAPGEAPPELLC 315 (401)
T ss_dssp EEEEESCCCSSCCEEEEEEEEETTCCGGGCEEEEEEEEETTEEEEEEEEEEEE-BCCEEEEESSSCCCCCTTCCCCCEEE
T ss_pred EEEeecccccccccCCcEEEEECcCCHhhCceEEEEEEecccceeEEEEEeec-cCCeEeeccCcceeecCCCccEEEEE
Confidence 0034689999999999999999999877766778888888 566655443332 24676 799999
Q ss_pred EecCCCCC--ceEEEe-eCCE---EeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEE
Q psy14542 119 RVSPKRLS--SAKAWL-KDGL---VLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQC 192 (371)
Q Consensus 119 ~~~~~~~~--~~v~W~-~~~~---~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C 192 (371)
.+.+..+. +.++|+ +++. .+..... . .........+|.| .+. +.|.+...+.+++.+.|+|
T Consensus 316 ~a~GfyP~~~~~VtW~~rdg~~g~~~~~~~~-~-~~s~~~~~~DGTy---------svs--S~L~V~~~~~e~~g~~YTC 382 (401)
T 3f8u_B 316 LVSHFYPSGGLEVEWELRGGPGGRSQKAEGQ-R-WLSALRHHSDGSV---------SLS--GHLQPPPVTTEQHGARYAC 382 (401)
T ss_dssp EEEEEBSSTTCEEEEEEESSSSCSCEECCSE-E-EECCCEECTTSCE---------EEE--EEEECCCCCGGGTTCEEEE
T ss_pred EecCCcCCCCcEEEEEecCCCCCceeccccc-c-cccccccCCCceE---------EEE--EEEEEccCccccCCCEEEE
Confidence 99887553 689995 7652 1111110 0 0111122223333 222 4566665543341569999
Q ss_pred Eeecc
Q psy14542 193 RGVNK 197 (371)
Q Consensus 193 ~~~~~ 197 (371)
.+.+.
T Consensus 383 ~V~H~ 387 (401)
T 3f8u_B 383 RIHHP 387 (401)
T ss_dssp EEECT
T ss_pred EEEcC
Confidence 99987
No 439
>3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens}
Probab=99.50 E-value=6.8e-12 Score=106.68 Aligned_cols=181 Identities=11% Similarity=0.106 Sum_probs=103.7
Q ss_pred cCCceeeecCCcEEEEEEecCCC-------------CCceEEEeeC--CEEeeeCCeeEEEEcccCc-----CCCeeEEE
Q psy14542 102 SSNQVVVDVGHRIELHCRVSPKR-------------LSSAKAWLKD--GLVLRRNSDEVLVLDRVQR-----EDAGMYQC 161 (371)
Q Consensus 102 ~~~~~~~~~g~~v~l~C~~~~~~-------------~~~~v~W~~~--~~~~~~~~~~~~~~~~~~~-----~~~g~y~~ 161 (371)
..+...+..|++++|.|.....+ ....+.|++. +.. ...+...+-.. ...|....
T Consensus 164 q~~sv~a~~Ge~vtL~C~~S~~~~~~~a~~~~~~~~~~~~V~Wyrq~pg~~-----~~vliY~~g~~~q~~~~~~g~~~f 238 (401)
T 3f8u_B 164 HTPAPRVRLGQDALLDLSFAYMPPTSEAASSLAPGPPPFGLEWRRQHLGKG-----HLLLAATPGLNGQMPAAQEGAVAF 238 (401)
T ss_dssp SCSSCEEETTSCEEECCEEEECCCTTC------CCSCCCEEEEEEEETTEE-----EEEEEECTTSCCCCCCCCTTCEEE
T ss_pred CCCcEEEeCCCCEEEEEeCCCCcccccccccccccCCceEEEEEEecCCCC-----cEEEEEeCCCccccccccCCeEEE
Confidence 34455568999999999986332 1257999973 211 11222211110 01121111
Q ss_pred EEeCCc---eeEeccceEEEEEeecCCccceeEEEeeccccceeeeeeccceeeeecchhccccceeeeeeeeeeeecCC
Q psy14542 162 HIEDGK---YHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDE 238 (371)
Q Consensus 162 ~~~~~~---~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~g~ 238 (371)
...+.. .....+..|.|.+++.+| .|.|.|.+.+. .+...... .+.|. .+|.+...+.....+..|+
T Consensus 239 ~~~~~~~~~g~~~g~~sL~I~~v~~~D-~G~Y~C~v~~~-~~~~~~~v---~L~V~-----~pP~V~v~p~~~~~~~~G~ 308 (401)
T 3f8u_B 239 AAWDDDEPWGPWTGNGTFWLPRVQPFQ-EGTYLATIHLP-YLQGQVTL---ELAVY-----KPPKVSLMPATLARAAPGE 308 (401)
T ss_dssp EEESCCCSSCCEEEEEEEEETTCCGGG-CEEEEEEEEET-TEEEEEEE---EEEEE-----BCCEEEEESSSCCCCCTTC
T ss_pred EeecccccccccCCcEEEEECcCCHhh-CceEEEEEEec-ccceeEEE---EEeec-----cCCeEeeccCcceeecCCC
Confidence 110000 022345789999999999 99999999887 55555455 67777 5676665543322134576
Q ss_pred -eEEEEEEeec-CCC--CceEEE-eCCc---ccccC------CceEEecc------eEEEeccCC-CCCeEEEEEEEcCC
Q psy14542 239 -SVILPCSAQG-NPL--PTIKWY-KQDS---PVEES------DRIQRIGS------SLSISHVEE-SDSGVWNCVANNSE 297 (371)
Q Consensus 239 -~~~l~C~~~~-~p~--~~v~W~-~~~~---~~~~~------~~~~~~~~------~l~i~~~~~-~d~G~Y~C~a~n~~ 297 (371)
.++|.|.+.+ +|. +.++|. +++. .+... ......++ .|.+..... ++.+.|+|.+.|..
T Consensus 309 ~~vtL~C~a~GfyP~~~~~VtW~~rdg~~g~~~~~~~~~~~s~~~~~~DGTysvsS~L~V~~~~~e~~g~~YTC~V~H~s 388 (401)
T 3f8u_B 309 APPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSALRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPS 388 (401)
T ss_dssp CCCCEEEEEEEEBSSTTCEEEEEEESSSSCSCEECCSEEEECCCEECTTSCEEEEEEEECCCCCGGGTTCEEEEEEECTT
T ss_pred ccEEEEEEecCCcCCCCcEEEEEecCCCCCceecccccccccccccCCCceEEEEEEEEEccCccccCCCEEEEEEEcCC
Confidence 7999999988 465 689995 7752 11111 11111222 344444432 34569999999876
No 440
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}
Probab=99.50 E-value=8.1e-14 Score=96.99 Aligned_cols=86 Identities=15% Similarity=0.239 Sum_probs=73.4
Q ss_pred ecccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC---------CeeEEEEccCCcCCCeEEEEE
Q psy14542 7 VKSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN---------SDEVLVLDRVQREDAGMYQCH 77 (371)
Q Consensus 7 v~~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~---------~~~~l~i~~~~~~d~G~Y~C~ 77 (371)
+..+|.+...+.. ..+.+|+.+.|.|.+ .+.|.+.+.|+|++..+... ...+|.|.+++.+|+|.|+|.
T Consensus 5 ~~~~P~~~~~~~~-~~v~~G~~v~l~C~~-~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~ 82 (103)
T 3qp3_A 5 LDHAPRITLRMRS-HRVPCGQNTRFILNV-QSKPTAEVKWYHNGVELQESSKIHYTNTSGVLTLEILDCHTDDSGTYRAV 82 (103)
T ss_dssp TCEEEEEEECCCC-EEEETTCCEEEEEEE-EEESCCEEEEEETTEECCCCSSEEEEEETTEEEEEECSCCGGGCEEEEEE
T ss_pred CCCCCEEEeCCcc-eEEeCCCeEEEEEEE-EecCCCEEEEEECCEECCCCCCEEEEECCCEEEEEEcCCCcccCEEEEEE
Confidence 3456788888877 899999999999954 56788899999999887654 345799999999999999999
Q ss_pred EEcCCCCeEEEEEEEEe
Q psy14542 78 VSADDDSAQMSAQVILG 94 (371)
Q Consensus 78 ~~~~~~~~~~~~~l~v~ 94 (371)
+.|..|.....+.|.|.
T Consensus 83 a~N~~G~~~~~~~l~V~ 99 (103)
T 3qp3_A 83 CTNYKGEASDYATLDVT 99 (103)
T ss_dssp EEETTEEEEEEEEEEEE
T ss_pred EEeCCCcEEEEEEEEEE
Confidence 99999988888888887
No 441
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=99.50 E-value=7.5e-14 Score=99.11 Aligned_cols=85 Identities=20% Similarity=0.245 Sum_probs=71.7
Q ss_pred ccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC---------CeeEEEEccCCcCCCeEEEEEEE
Q psy14542 9 SSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN---------SDEVLVLDRVQREDAGMYQCHVS 79 (371)
Q Consensus 9 ~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~---------~~~~l~i~~~~~~d~G~Y~C~~~ 79 (371)
.+|.+...|.. ..+.+|+.++|.|.+ .+.|.+.+.|+|++..+... ....|.|.+++.+|+|.|+|.+.
T Consensus 6 ~pp~i~~~~~~-~~v~~G~~v~l~C~~-~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~ 83 (114)
T 2cqv_A 6 SGPQIIQFPED-QKVRAGESVELFGKV-TGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVE 83 (114)
T ss_dssp CCCEESCCCCS-EEEETTCCEEEEEEE-ESSSSCEEEEEESSSBCCCSSSEEEEECSSEEEEEETTCCTTTCEEEEEEEE
T ss_pred CCCEEEeCCCC-eEEeCCCeEEEEEEE-EcCCCCEEEEEECCEECcCCCCEEEEEcCCEEEEEECCCChhcCEEEEEEEE
Confidence 35677777777 899999999999955 46788999999998766533 36789999999999999999999
Q ss_pred cCCCCeEEEEEEEEec
Q psy14542 80 ADDDSAQMSAQVILGG 95 (371)
Q Consensus 80 ~~~~~~~~~~~l~v~~ 95 (371)
|..|.....+.|.|.+
T Consensus 84 N~~g~~~~~~~l~V~~ 99 (114)
T 2cqv_A 84 NKLGSRQAQVNLTVVD 99 (114)
T ss_dssp CSSCEEECCEEEEEEC
T ss_pred ECCCcEEEEEEEEEEC
Confidence 9999888888888873
No 442
>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1
Probab=99.49 E-value=5.5e-15 Score=106.42 Aligned_cols=97 Identities=23% Similarity=0.302 Sum_probs=80.6
Q ss_pred eeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecCCCCc-eEEEeCCccccc--CCceEEe--------cceEEE
Q psy14542 210 RLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPT-IKWYKQDSPVEE--SDRIQRI--------GSSLSI 278 (371)
Q Consensus 210 ~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~-v~W~~~~~~~~~--~~~~~~~--------~~~l~i 278 (371)
.|.|. .+|.+.. +.... +..|+.+.|.|.+.|.|.|. +.|++++..+.. ..++... .+.|.|
T Consensus 8 ~l~V~-----~~P~i~~-~~~~~-~~~G~~v~l~C~~~g~P~p~~i~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I 80 (122)
T 2cry_A 8 TLTVN-----GPPIISS-TQTQH-ALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTI 80 (122)
T ss_dssp CCCCC-----SSCCEEE-ECCCC-CCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEEEETTEEEEEEEC
T ss_pred EEEEe-----cCCCccC-CCeEE-EecCCCEEEEEEEeecCCCcEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEE
Confidence 66777 7788777 65555 99999999999999999997 999999988775 3444431 237999
Q ss_pred eccCCCCC-eEEEEEEEcCCCCceeEEEEEEecCcc
Q psy14542 279 SHVEESDS-GVWNCVANNSEGQDKMQLFIQYAHGKY 313 (371)
Q Consensus 279 ~~~~~~d~-G~Y~C~a~n~~g~~~~~~~l~v~~~p~ 313 (371)
.++..+|. |.|+|.|.|..|.....+.|.|..++.
T Consensus 81 ~~v~~~D~~G~Y~C~a~N~~G~~~~~~~l~V~~~~~ 116 (122)
T 2cry_A 81 SNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSEM 116 (122)
T ss_dssp TTCCHHHHHSCEEEEEECSSCEEEEEECCCCSCSSC
T ss_pred cCCChhhCCceEEEEEECCCCeEEEEEEEEECCCCC
Confidence 99999998 999999999999999999998887655
No 443
>3mlr_H Human monoclonal anti-HIV-1 GP120 V3 antibody 255 heavy chain; human monoclonal antibody, FAB, third variable antibody-antigen interaction; 1.80A {Homo sapiens} PDB: 3mls_H 3mlt_H 3mlu_H 3mlv_H
Probab=99.49 E-value=6.3e-13 Score=106.72 Aligned_cols=158 Identities=16% Similarity=0.215 Sum_probs=94.7
Q ss_pred EEEeccCcEEEEEEecCC-CCCCeeEEEeCC-----EEEe-----------e-C-------------CeeEEEEccCCcC
Q psy14542 21 VVVDVGHRIELHCRVSPK-RLSSAKAWLKDG-----LVLR-----------R-N-------------SDEVLVLDRVQRE 69 (371)
Q Consensus 21 ~~~~~G~~v~l~C~~~~~-~~~~~~~W~~~~-----~~~~-----------~-~-------------~~~~l~i~~~~~~ 69 (371)
+.+.+|++++|.|..... .+...+.|||.. ..+. . . ...+|.|.+++.+
T Consensus 10 ~~v~~G~~v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~ 89 (226)
T 3mlr_H 10 EVKQPGQSLKISCKSSGYNFLDSWIGWVRQIPGKGLEWIGIIYPDDSDAHYSPSFEGQVTMSVDKSISTAYLQWTTLQAS 89 (226)
T ss_dssp EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTBTTBEEEEEGGGTEEEEEESSCCGG
T ss_pred EEEecCCCEEEEEEecCccccCCEEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEecCCCCEEEEEECCCCcc
Confidence 789999999999976532 234679999821 1110 0 0 4456999999999
Q ss_pred CCeEEEEEEEcCCC-------Ce--EEEEEEEEec---ceeeEec-CCceeeecCCcEEEEEEecCCCC-CceEEEeeCC
Q psy14542 70 DAGMYQCHVSADDD-------SA--QMSAQVILGG---ELVEIAS-SNQVVVDVGHRIELHCRVSPKRL-SSAKAWLKDG 135 (371)
Q Consensus 70 d~G~Y~C~~~~~~~-------~~--~~~~~l~v~~---~~~~~~~-~~~~~~~~g~~v~l~C~~~~~~~-~~~v~W~~~~ 135 (371)
|+|.|.|.+.+..+ .. .....|.|.. .+|.+.. .+...+..|+.+.|.|.+.+..+ ++.+.| ++
T Consensus 90 DsG~Y~C~~~~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~P~i~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~v~W--~~ 167 (226)
T 3mlr_H 90 DTGKYFCTRLYLFEGAQSSNAFDLWGQGTMILVSSGTTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSW--NS 167 (226)
T ss_dssp GCEEEEEEEEEEEESSSEEEEEEEECCCEEEEECCCCCBCCEEEEEEEEECSTTSSEEEEEEEEEEEBSSCCEEEE--GG
T ss_pred cCEEEEEeEccCCCcccccchhhhhCCccEEeeccCCCCCCcEEEecCcccccCCCCEEEEEEEEEEECCCeEEEE--CC
Confidence 99999999976421 00 1123555542 2333332 22222358999999999987533 478999 33
Q ss_pred EEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeecc
Q psy14542 136 LVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNK 197 (371)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~ 197 (371)
..+.... .........+| .+... +.|.|.....+| |.|+|.+.+.
T Consensus 168 ~~~~~~~----~~~~~~~~~~g---------~~~~~--s~L~i~~~~~~~--~~ytC~v~h~ 212 (226)
T 3mlr_H 168 GALTSGV----HTFPAVLQSSG---------LYSLS--SVVTVPSSSLGT--QTYICNVNHK 212 (226)
T ss_dssp GTCCTTE----EECCCEECTTS---------CEEEE--EEEEEEGGGTTT--CCCEEEEEEG
T ss_pred ccccCCe----EeCCcEECCCC---------CEEEE--EEEEECHhHcCC--CeEEEEEEEC
Confidence 2221110 00000011223 33332 567887776544 8999999988
No 444
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}
Probab=99.49 E-value=1.7e-13 Score=94.60 Aligned_cols=84 Identities=20% Similarity=0.320 Sum_probs=71.1
Q ss_pred ccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC----------CeeEEEEccCCcCCCeEEEEEE
Q psy14542 9 SSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN----------SDEVLVLDRVQREDAGMYQCHV 78 (371)
Q Consensus 9 ~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~----------~~~~l~i~~~~~~d~G~Y~C~~ 78 (371)
.+|.+...|.. ..+.+|+.+.|.|.+ .+.|.+.+.|++++..+... ...+|.|.+++.+|+|.|+|.+
T Consensus 4 ~~P~~~~~~~~-~~v~~G~~v~l~C~~-~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a 81 (99)
T 1u2h_A 4 APPTFKVSLMD-QSVREGQDVIMSIRV-QGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGFYTCKA 81 (99)
T ss_dssp EEEEEEECCCC-EEEETTCCEEEEEEE-EEESCCEEEEEETTEECCCBTTEEEEECGGGEEEEEESSCCGGGCEEEEEEE
T ss_pred CCCEEEEcCCc-eEecCCCEEEEEEEE-EEcCCCEEEEEECCEECCCCCCEEEEECCCCEEEEEEccCCcCCCEEEEEEE
Confidence 36778888887 899999999999955 56778899999999877543 2237999999999999999999
Q ss_pred EcCCCCeEEEEEEEEe
Q psy14542 79 SADDDSAQMSAQVILG 94 (371)
Q Consensus 79 ~~~~~~~~~~~~l~v~ 94 (371)
.|..|.....+.|.|.
T Consensus 82 ~N~~g~~~~~~~l~V~ 97 (99)
T 1u2h_A 82 VNEYGARQCEARLEVR 97 (99)
T ss_dssp EETTEEEEEEEEEEEE
T ss_pred EECCCceeEEEEEEEE
Confidence 9999888888888876
No 445
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=1.1e-13 Score=95.65 Aligned_cols=85 Identities=19% Similarity=0.363 Sum_probs=73.0
Q ss_pred cccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC-------CeeEEEEccCCcCCCeEEEEEEEc
Q psy14542 8 KSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN-------SDEVLVLDRVQREDAGMYQCHVSA 80 (371)
Q Consensus 8 ~~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~-------~~~~l~i~~~~~~d~G~Y~C~~~~ 80 (371)
..+|.+...|.. ..+.+|+.+.|.|.+ .+.|.+.+.|++++..+... .+.+|.|.+++.+|+|.|+|.+.|
T Consensus 6 ~~~P~i~~~p~~-~~v~~G~~~~l~C~~-~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n 83 (100)
T 2edj_A 6 SGPPIILQGPAN-QTLAVDGTALLKCKA-TGDPLPVISWLKEGFTFPGRDPRATIQEQGTLQIKNLRISDTGTYTCVATS 83 (100)
T ss_dssp CSSCEEEECCCC-EEEESSSEEEECCEE-ECSSCCEEEEEESSSEESSSCSSCEECTTCCEEEESCCTTTCCEEEEEEEC
T ss_pred CCCCEEEeCcCC-EEEcCCCcEEEEEEE-EEcCCCEEEEEECCEECCCCCCCEEEcCCCEEEEccCCcccCEEEEEEEEc
Confidence 346788888887 899999999999955 47788899999999887632 456899999999999999999999
Q ss_pred CCCCeEEEEEEEEe
Q psy14542 81 DDDSAQMSAQVILG 94 (371)
Q Consensus 81 ~~~~~~~~~~l~v~ 94 (371)
..|.....+.|.|.
T Consensus 84 ~~g~~~~~~~l~V~ 97 (100)
T 2edj_A 84 SSGETSWSAVLDVT 97 (100)
T ss_dssp SSCCCBCCEEEEEE
T ss_pred CCCCEEEEEEEEEe
Confidence 99988888888887
No 446
>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2
Probab=99.49 E-value=6.5e-13 Score=105.01 Aligned_cols=168 Identities=15% Similarity=0.237 Sum_probs=98.0
Q ss_pred eeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEecc------ceEEEE
Q psy14542 106 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSS------GELIIH 179 (371)
Q Consensus 106 ~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~------~~l~i~ 179 (371)
..+.+|++++|.|.+.+.. ..+.|+|.... ......+.. +. + ....+++.+..+ ..|.|.
T Consensus 11 v~v~~G~~v~L~C~~~~~~--~~v~W~r~~~~--~~~~~~~~~-~~-----~----~~~~~R~~~~~~~~~~~~~~L~I~ 76 (207)
T 1ypz_E 11 LSLHEGTDSALRCNFTTTM--RSVQWFRQNSR--GSLISLFYL-AS-----G----TKENGRLKSAFDSKERRYSTLHIR 76 (207)
T ss_dssp EEEETTCCEEEEEEESSCC--SEEEEEEECTT--SCCEEEEEE-SS-----E----EEEETTEEEEECTTTCSEEEEEEC
T ss_pred EEEccCCcEEEEEEEeCCC--eEEEEEEeCCC--CCeEEEEEE-cc-----C----CccCCCEEEEeccCCCCEEEEEEC
Confidence 3458999999999998654 37999985310 000111111 00 0 001234444322 579999
Q ss_pred EeecCCccceeEEEeeccccc--------eeeeeeccceeeeecch-hccccceeeeeeeeeeeecCCeEEEEEEeecC-
Q psy14542 180 QVDESDRYRSYQCRGVNKLTG--------ASLLSVNRGRLSLTENK-RLLSAAKMFEKHRILNVKKDESVILPCSAQGN- 249 (371)
Q Consensus 180 ~~~~~d~~g~y~C~~~~~~~~--------~~~~~~~~~~l~v~~~~-~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~- 249 (371)
+++.+| +|.|.|.+.+. .+ ..........|.|.... ...+|.+. +..+ .+.|.|.+.+.
T Consensus 77 ~v~~~D-~G~Y~C~~~~~-~~~~p~~~~~~~~~~~~~t~L~V~~~~~~~~~P~v~--------~~~~-~~~l~C~~~g~~ 145 (207)
T 1ypz_E 77 DAQLED-SGTYFCAADTW-HISEGYELGTDKLVFGQGTQVTVEPKSQPPAKPSVF--------IMKN-GTNVACLVKDFY 145 (207)
T ss_dssp SCCGGG-CEEEEEEEECB-CCCTTCCCCCCCCEECCCEEEEEECCCCCCCCCEEE--------EEEE-TTEEEEEEEEES
T ss_pred CCCHHH-CEEEEEEEecC-CcccccccccceeeecCccEEEEccCCCCCCCCeEE--------EeCC-CCeEEEEEeeEe
Confidence 999999 99999999876 21 00000011266666321 01123222 1112 26899999874
Q ss_pred CC-CceEEEeCCcccccCCc-eE-EecceEEEeccCC-CCCeEEEEEEEcCCCC
Q psy14542 250 PL-PTIKWYKQDSPVEESDR-IQ-RIGSSLSISHVEE-SDSGVWNCVANNSEGQ 299 (371)
Q Consensus 250 p~-~~v~W~~~~~~~~~~~~-~~-~~~~~l~i~~~~~-~d~G~Y~C~a~n~~g~ 299 (371)
|. +.+.|+++ ..+..... .. ..++.+.+..... +|.|.|+|.|.|..+.
T Consensus 146 P~~~~v~W~~~-~~l~~~~~~~~~~~~g~y~~~~~~~~~~~~~ytC~v~~~~~~ 198 (207)
T 1ypz_E 146 PKEVTISLRSS-KKIVEFDPAIVISPSGKYSAVKLGQYGDSNSVTCSVQHNSET 198 (207)
T ss_dssp SSCCEEEEECS-SEEEECCCEEEECTTSSEEEEECEEESSTTTCEEEEEETTEE
T ss_pred CCCeEEEEecC-CcccCCccceEEcCCCcEEEEEeecccCCCcEEEEEEECCcc
Confidence 54 78999999 66543322 11 2345666655544 6789999999998764
No 447
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=1.2e-13 Score=95.18 Aligned_cols=80 Identities=26% Similarity=0.386 Sum_probs=66.3
Q ss_pred ccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC---------CeeEEEEccCCcCCCeEEEEEEE
Q psy14542 9 SSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN---------SDEVLVLDRVQREDAGMYQCHVS 79 (371)
Q Consensus 9 ~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~---------~~~~l~i~~~~~~d~G~Y~C~~~ 79 (371)
.++.+...+.. ..+.+|+.+.|.|.+ .|.+.+.|+|+|..+... ....|.|.+++.+|+|.|+|.+.
T Consensus 6 ~p~~~~~~~~~-~~v~~G~~v~l~C~v---~p~p~v~W~k~g~~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a~ 81 (100)
T 2yuz_A 6 SGLKILTPLTD-QTVNLGKEICLKCEI---SENIPGKWTKNGLPVQESDRLKVVQKGRIHKLVIANALTEDEGDYVFAPD 81 (100)
T ss_dssp CCCCCSBCCCC-EEEETTSCCCEEEEC---SSCCCEEEEETTEECCCCSSEEEEECSSEEEEEESSCCGGGCSEEEEEES
T ss_pred CCCEEeccCCc-eEEcCCCCEEEEEEe---CCCCeEEEEECCEECCCCCcEEEEEeCCEEEEEECCCChhhCEEEEEEEc
Confidence 35667777777 899999999999966 677889999999887654 33589999999999999999999
Q ss_pred cCCCCeEEEEEEEEe
Q psy14542 80 ADDDSAQMSAQVILG 94 (371)
Q Consensus 80 ~~~~~~~~~~~l~v~ 94 (371)
|. .....+.|.|.
T Consensus 82 N~--~~~~~a~L~V~ 94 (100)
T 2yuz_A 82 AY--NVTLPAKVHVI 94 (100)
T ss_dssp SS--CCCEEEEEEEE
T ss_pred CC--CeeEEEEEEEe
Confidence 87 45667777777
No 448
>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens}
Probab=99.49 E-value=1.8e-13 Score=92.72 Aligned_cols=82 Identities=18% Similarity=0.403 Sum_probs=66.3
Q ss_pred ceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCCCce-
Q psy14542 223 AKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDK- 301 (371)
Q Consensus 223 ~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~- 301 (371)
.+...+.... +..|+.+.|.|.+.|.|.+.+.|++++..+.... .+.|.|.++..+|+|.|+|.|.|..|...
T Consensus 5 ~i~~~p~~~~-v~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~-----~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s 78 (91)
T 3bfo_A 5 QICVEPTSQK-LMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHET-----KKLYMVPYVDLEHQGTYWCHVYNDRDSQDS 78 (91)
T ss_dssp EEEECCCCEE-ECTTSCEEEECEEECSSCCEEEEEETTEECTTCC-----SSEEEESSCCGGGCEEEEEEEECSSCEEEC
T ss_pred EEEECCCccE-ecCCCcEEEEEEeccCCCCEEEEEcCCeeCCcCC-----CCeEEECCCCHHhCEEEEEEEEcCCCCEEe
Confidence 3334444445 8999999999999999999999999998876553 46899999999999999999999999743
Q ss_pred eEEEEEEec
Q psy14542 302 MQLFIQYAH 310 (371)
Q Consensus 302 ~~~~l~v~~ 310 (371)
..+.|.|.+
T Consensus 79 ~~~~l~V~~ 87 (91)
T 3bfo_A 79 KKVEIIIDE 87 (91)
T ss_dssp CCEEEEEC-
T ss_pred eeEEEEEeh
Confidence 556776654
No 449
>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens}
Probab=99.49 E-value=1.6e-13 Score=93.09 Aligned_cols=84 Identities=26% Similarity=0.469 Sum_probs=71.0
Q ss_pred ccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeCCeeEEEEccCCcCCCeEEEEEEEcCCCCeE-E
Q psy14542 9 SSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHVSADDDSAQ-M 87 (371)
Q Consensus 9 ~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~-~ 87 (371)
.++.+...|.. ..+.+|+++.|.|. ..+.|.+.+.|+|++..+.......|.|.+++.+|+|.|+|.+.|..|... .
T Consensus 2 ~~~~i~~~p~~-~~v~~G~~~~l~C~-~~g~p~p~i~W~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~ 79 (91)
T 3bfo_A 2 SKLQICVEPTS-QKLMPGSTLVLQCV-AVGSPIPHYQWFKNELPLTHETKKLYMVPYVDLEHQGTYWCHVYNDRDSQDSK 79 (91)
T ss_dssp CCCEEEECCCC-EEECTTSCEEEECE-EECSSCCEEEEEETTEECTTCCSSEEEESSCCGGGCEEEEEEEECSSCEEECC
T ss_pred CceEEEECCCc-cEecCCCcEEEEEE-eccCCCCEEEEEcCCeeCCcCCCCeEEECCCCHHhCEEEEEEEEcCCCCEEee
Confidence 35778888888 88999999999995 456788899999999988766677999999999999999999999887543 4
Q ss_pred EEEEEEe
Q psy14542 88 SAQVILG 94 (371)
Q Consensus 88 ~~~l~v~ 94 (371)
.+.|.|.
T Consensus 80 ~~~l~V~ 86 (91)
T 3bfo_A 80 KVEIIID 86 (91)
T ss_dssp CEEEEEC
T ss_pred eEEEEEe
Confidence 5677665
No 450
>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=6.1e-14 Score=98.40 Aligned_cols=90 Identities=18% Similarity=0.278 Sum_probs=69.7
Q ss_pred ccceeeeeeeeeeeecCCeEEEEEEeecC---CCCceEEEeCCc-cccc--CCceEE----------ecceEEEeccCCC
Q psy14542 221 SAAKMFEKHRILNVKKDESVILPCSAQGN---PLPTIKWYKQDS-PVEE--SDRIQR----------IGSSLSISHVEES 284 (371)
Q Consensus 221 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~---p~~~v~W~~~~~-~~~~--~~~~~~----------~~~~l~i~~~~~~ 284 (371)
.+.+...+.... +.+|++++|.|.+.+. |.|.|.|+|+.. .+.. +.++.. ....|.|.++..+
T Consensus 12 ~~~f~~~P~~v~-V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~ 90 (118)
T 2edn_A 12 TGVFLKKPDSVS-VETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASNVYTVELHIGKVVLG 90 (118)
T ss_dssp SSSCSBCCCCCE-EETTSCEECCEEEETTTSSSCCCCEEEETTTCCCCCSTTSSCEEEEEECSSSCEEEEEEEESSCCTT
T ss_pred cceEEECCCCeE-EeCCCCEEEEEEEeccCCCCCCcEEEeeCCEeccCCCCccEEEeccccccccccceEEEEEeeCChh
Confidence 344555566666 9999999999999875 789999999742 1111 122221 2467999999999
Q ss_pred CCeEEEEEEEcCCCCceeEEEEEEecC
Q psy14542 285 DSGVWNCVANNSEGQDKMQLFIQYAHG 311 (371)
Q Consensus 285 d~G~Y~C~a~n~~g~~~~~~~l~v~~~ 311 (371)
|+|.|+|+|.|..|..+..+.|.|..+
T Consensus 91 D~G~Y~Cevsn~~g~~s~~~~L~V~~~ 117 (118)
T 2edn_A 91 DRGYYRLEVKAKDTCDSCGFNIDVEAP 117 (118)
T ss_dssp TCSCEEEEEECSSCEEEEEECCEEECC
T ss_pred hCEEEEEEEEEcCCcEEEEEEEEEEcC
Confidence 999999999999999999999999874
No 451
>1hxm_A Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2
Probab=99.48 E-value=1.9e-12 Score=103.70 Aligned_cols=158 Identities=17% Similarity=0.229 Sum_probs=94.0
Q ss_pred EEEeCCCcEEEeccCcEEEEEEecCCC-CCCeeEEEeC--C---EEEee----------C----------CeeEEEEccC
Q psy14542 13 IEMSPSGQVVVDVGHRIELHCRVSPKR-LSSAKAWLKD--G---LVLRR----------N----------SDEVLVLDRV 66 (371)
Q Consensus 13 ~~~~p~~~~~~~~G~~v~l~C~~~~~~-~~~~~~W~~~--~---~~~~~----------~----------~~~~l~i~~~ 66 (371)
+...|.. +.+.+|++++|.|.+.... ....+.|+|. + ..+.. . ...+|.|.++
T Consensus 4 v~q~p~~-v~v~~G~~vtL~C~~s~~~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v 82 (229)
T 1hxm_A 4 LVPEHQT-VPVSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAP 82 (229)
T ss_dssp EEESCSE-EEEETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSC
T ss_pred cEeCCCE-EEEcCCCCEEEEeEecCCccCcceEEEEEECCCCCcEEEEEcCCccCCCcCCeEEEEEcCCCCEEEEEECcC
Confidence 3444555 8899999999999765221 2457999983 1 22210 0 3458999999
Q ss_pred CcCCCeEEEEEEEcCC------CC--eEEEEEEEEecceeeEecCCceeeecCCcEEEEEEecCCCC-CceEEEeeCCEE
Q psy14542 67 QREDAGMYQCHVSADD------DS--AQMSAQVILGGELVEIASSNQVVVDVGHRIELHCRVSPKRL-SSAKAWLKDGLV 137 (371)
Q Consensus 67 ~~~d~G~Y~C~~~~~~------~~--~~~~~~l~v~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~-~~~v~W~~~~~~ 137 (371)
+.+|+|.|.|.+.+.. +. ......|.|.. .......|...+.. ..+.|.|.+.+..+ +..+.|+++ ..
T Consensus 83 ~~~Dsg~Y~C~~~~~~~~~~~~~~~~~g~gt~L~V~~-~~~~~~~P~v~~~~-~~~~L~C~~~g~~P~~i~v~W~~~-~~ 159 (229)
T 1hxm_A 83 SERDEGSYYCACDTLGMGGEYTDKLIFGKGTRVTVEP-RSQPHTKPSVFVMK-NGTNVACLVKEFYPKDIRINLVSS-KK 159 (229)
T ss_dssp CGGGCEEEEEEEECCCCSSSCCCCCEEBCCEEEEEEC-CSCCCBCCEEEEEE-ETTEEEEEEESCBSSCCEEEEECS-SE
T ss_pred CHhHCeEEEEEEecCCCcccccchhhcCccEEEEEec-cCCCCcCCcEEEcC-CCCeEEEEEEEEeCCCEEEEEecC-CE
Confidence 9999999999998753 11 11224666662 11111223333322 23589999988744 359999998 66
Q ss_pred eeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCCccceeEEEeecc
Q psy14542 138 LRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNK 197 (371)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d~~g~y~C~~~~~ 197 (371)
+...... ... ...| .+.+. ......+ .|.|+|.+.+.
T Consensus 160 ~~~~~~~-~~~-----~~dg---------~y~~~-------~~~~~~~-~~~ytC~V~h~ 196 (229)
T 1hxm_A 160 ITEFDPA-IVI-----SPSG---------KYNAV-------KLGKYED-SNSVTCSVQHD 196 (229)
T ss_dssp EEECCCE-EEE-----CTTS---------SEEEE-------EEEEETT-TTTCEEEEEET
T ss_pred EecCccc-eEE-----CCCC---------cEEEE-------ECcccCC-CCcEEEEEEeC
Confidence 5533211 110 1222 22221 1123366 89999999987
No 452
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A
Probab=99.48 E-value=5.3e-14 Score=95.87 Aligned_cols=82 Identities=16% Similarity=0.240 Sum_probs=67.4
Q ss_pred cceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCC--EEEeeC-------CeeEEEEccCCcCCCeEEEEEEEc
Q psy14542 10 SLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDG--LVLRRN-------SDEVLVLDRVQREDAGMYQCHVSA 80 (371)
Q Consensus 10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~--~~~~~~-------~~~~l~i~~~~~~d~G~Y~C~~~~ 80 (371)
+|.+...+.. ..+.+|+.+.|.|. ..+.|.+.+.|++++ ..+... ....|.|.+++.+|+|.|+|.+.|
T Consensus 2 ~P~i~~~~~~-~~v~~G~~~~l~C~-~~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N 79 (93)
T 1wit_A 2 KPKILTASRK-IKIKAGFTHNLEVD-FIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKN 79 (93)
T ss_dssp CCEECCCCCE-EEECTTBCCEEEEE-EECCSSCEEEEECSTTTCBCSTTSEEEEETTEEEEECTTBCGGGCEEEEEEEEE
T ss_pred CCeEEcCCCc-eEEeCCCEEEEEEE-EEEcCCCEEEEEECCCCcccCCcEEEEecCCEEEEEECCCChhcCEEEEEEEEc
Confidence 4566555555 89999999999995 557889999999998 554322 557899999999999999999999
Q ss_pred CCCCeEEEEEEEE
Q psy14542 81 DDDSAQMSAQVIL 93 (371)
Q Consensus 81 ~~~~~~~~~~l~v 93 (371)
..|.....+.|.|
T Consensus 80 ~~G~~~~~~~l~V 92 (93)
T 1wit_A 80 ELGEDEAIFEVIV 92 (93)
T ss_dssp TTEEEEEEEEEEE
T ss_pred CCCeEEEEEEEEE
Confidence 9998888888776
No 453
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=5.8e-14 Score=96.94 Aligned_cols=85 Identities=21% Similarity=0.283 Sum_probs=71.4
Q ss_pred ecccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC------CeeEEEEccCCcCCCeEEEEEEEc
Q psy14542 7 VKSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN------SDEVLVLDRVQREDAGMYQCHVSA 80 (371)
Q Consensus 7 v~~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~------~~~~l~i~~~~~~d~G~Y~C~~~~ 80 (371)
+..+|.+...|.. ..+.+|+++.|.|.+ .+.|.+.+.|++++..+... ....|.|.+++.+|+|.|+|.+.|
T Consensus 8 ~~~~P~~~~~~~~-~~v~~G~~v~l~C~~-~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N 85 (99)
T 2yr3_A 8 MEVAPSFSSVLKD-CAVIEGQDFVLQCSV-RGTPVPRITWLLNGQPIQYARSTCEAGVAELHIQDALPEDHGTYTCLAEN 85 (99)
T ss_dssp CCEEEEEEECCCC-EEECTTCCEEEECEE-EEESCCCCEEEESSSBCSSCCCEEETTEEEEEECSCCTTCCBCEEEEEEC
T ss_pred cccCCceeecCCC-CEEeCCCeEEEEEEE-eeeCCCeEEEEECCEECcccceEeeCCeEEEEECCCChhhCEEEEEEEEE
Confidence 3456788888887 899999999999965 56788899999998766543 457899999999999999999999
Q ss_pred CCCCeEEEEEEEE
Q psy14542 81 DDDSAQMSAQVIL 93 (371)
Q Consensus 81 ~~~~~~~~~~l~v 93 (371)
..|.....+.|.|
T Consensus 86 ~~g~~~~~~~l~V 98 (99)
T 2yr3_A 86 ALGQVSCSAWVTV 98 (99)
T ss_dssp SSCEEEEECCEEE
T ss_pred CCCeEEEEEEEEE
Confidence 9988877777766
No 454
>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus receptor, cell adhesion, integrin ligand, glycopr LFA-1 ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A 1d3e_I 1d3i_I 3tcx_A
Probab=99.48 E-value=3e-12 Score=97.59 Aligned_cols=154 Identities=10% Similarity=0.138 Sum_probs=98.5
Q ss_pred eeeecCCcEEEEEEecCCCCCceEEEeeC-CEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecC
Q psy14542 106 VVVDVGHRIELHCRVSPKRLSSAKAWLKD-GLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDES 184 (371)
Q Consensus 106 ~~~~~g~~v~l~C~~~~~~~~~~v~W~~~-~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~ 184 (371)
..+.+|+++.|.|.+....+ ..+.|.-. ++..... ++. ....|.|.+++
T Consensus 9 ~~V~~G~Sv~l~Cs~~c~~p-~~~~~~t~l~~~~~~~-----------------------~~~----~~~~l~l~~vs-- 58 (185)
T 1iam_A 9 VILPRGGSVLVTCSTSCDQP-KLLGIETPLPKKELLL-----------------------PGN----NRKVYELSNVQ-- 58 (185)
T ss_dssp EEEETTEEEEEEEEECSSSC-SEEEEECSSCEEEECS-----------------------SSS----SEEEEEEEEEC--
T ss_pred cEEeCCCCEEEEEEccCCCC-ccceEEeeCCCccEec-----------------------cCC----ceeEEEEEecC--
Confidence 34589999999999975443 45777531 1111100 000 01468899997
Q ss_pred CccceeEEEeeccccceeeeeeccceeeeecchhccccce-eeeeeeeeeeecCCeEEEEEEeec-CCCC--ceEEEeCC
Q psy14542 185 DRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAK-MFEKHRILNVKKDESVILPCSAQG-NPLP--TIKWYKQD 260 (371)
Q Consensus 185 d~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~-~~~~~~~~~~~~g~~~~l~C~~~~-~p~~--~v~W~~~~ 260 (371)
+ .|.|.|.+... ........ .+.|. .+|.. .+.+.... +.+|+.++|.|.+.| .|.. .|+|++++
T Consensus 59 ~-~g~y~C~~~c~-~~~~~~~~---~l~V~-----~~P~~v~i~~~~~~-~~~G~~~tL~C~v~g~~P~~~l~i~w~kg~ 127 (185)
T 1iam_A 59 E-DSQPMCYSNCP-DGQSTAKT---FLTVY-----WTPERVELAPLPSW-QPVGKQLTLRCQVEGGAPRAQLTVVLLRGE 127 (185)
T ss_dssp S-CBCCEEEEECS-SCEEEEEC---EEEEE-----BCCSEEEECCCCSE-ECTTSEEEEEEEEECCBCGGGEEEEEEETT
T ss_pred c-CCEEEEEEECC-CCceEEEE---EEEEe-----CCCCCCEEccCCcc-ccCCCcEEEEEEcCCccCCCCcEEEEEeCC
Confidence 3 58999998765 44444444 77777 34433 23333333 899999999999998 4554 48999999
Q ss_pred cccccCCceE-EecceEEEeccCCCCCeEEEEEEEcCCCCc
Q psy14542 261 SPVEESDRIQ-RIGSSLSISHVEESDSGVWNCVANNSEGQD 300 (371)
Q Consensus 261 ~~~~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~ 300 (371)
..+....... ..+.+|.+.....+|...|+|+|.|..+..
T Consensus 128 ~~l~~~~~~~~~~~~tl~~~~~reD~g~~~sC~A~~~l~~~ 168 (185)
T 1iam_A 128 KELKREPAVGEPAEVTTTVLVRRDHHGAQFSCRTELDLRPQ 168 (185)
T ss_dssp EEEEEEECCTTTEEEEEEEECCSSCSSCEEEEEEEEECGGG
T ss_pred EEcccccCCCccccEEEEEeceeccCCCeEEEEEEecCccc
Confidence 8775422100 112357777666767779999999988743
No 455
>1gxe_A Myosin binding protein C, cardiac-type; cytoskeleton, muscle, IGI, thick filament, immunoglobulin domain; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=99.48 E-value=8.9e-14 Score=101.60 Aligned_cols=80 Identities=25% Similarity=0.471 Sum_probs=66.0
Q ss_pred eeeeeeecCCeEEEEEEeecCCCCceEEEeCC----------------------------ccc-ccCCceEE--ec--ce
Q psy14542 229 HRILNVKKDESVILPCSAQGNPLPTIKWYKQD----------------------------SPV-EESDRIQR--IG--SS 275 (371)
Q Consensus 229 ~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~----------------------------~~~-~~~~~~~~--~~--~~ 275 (371)
.... +..|+.+.|.|.+.|.|.|.++|++++ ..+ ....++.. .+ ..
T Consensus 26 ~~~~-v~~G~~v~L~C~~~G~P~P~i~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~r~~i~~~~~~s~ 104 (139)
T 1gxe_A 26 DTIV-VVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEGRVRVETTKDRSI 104 (139)
T ss_dssp CEEE-ESSSSCCCCEEECCSBSCCEEEEEEECCCSCSSCCCCCCCCCCCCCCSSCCCCSCCCCCSCSSSCEEEEETTEEE
T ss_pred CCEE-EeCCCeEEEEEEEEEcCCCeEEEEECCcccccccccccccccccccccccccccceeecCCCCeEEEEeCCCEEE
Confidence 3444 999999999999999999999999998 444 23344432 22 36
Q ss_pred EEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEe
Q psy14542 276 LSISHVEESDSGVWNCVANNSEGQDKMQLFIQYA 309 (371)
Q Consensus 276 l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 309 (371)
|.|.++..+|+|.|+|.|.|..|....++.|.|.
T Consensus 105 L~I~~v~~~DsG~Y~C~A~N~~G~~~~~~~L~V~ 138 (139)
T 1gxe_A 105 FTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVI 138 (139)
T ss_dssp EECSCCCTTTCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred EEECCCCcccCEEEEEEEEeCCceEEEEEEEEEE
Confidence 9999999999999999999999999999988875
No 456
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}
Probab=99.47 E-value=2.8e-13 Score=93.50 Aligned_cols=85 Identities=18% Similarity=0.324 Sum_probs=71.9
Q ss_pred cccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC---------CeeEEEEccCCcCCCeEEEEEE
Q psy14542 8 KSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN---------SDEVLVLDRVQREDAGMYQCHV 78 (371)
Q Consensus 8 ~~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~---------~~~~l~i~~~~~~d~G~Y~C~~ 78 (371)
..+|.+...|.. ..+.+|+.+.|.|.+ .+.|.+.+.|++++..+... ...+|.|.+++.+|+|.|+|.+
T Consensus 4 ~~~P~i~~~~~~-~~v~~G~~~~l~C~~-~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a 81 (99)
T 3puc_A 4 SSKPVIVTGLQD-TTVSSDSVAKFAVKA-TGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTV 81 (99)
T ss_dssp CEEEEEEECCCC-EEEESSSCEEEEEEE-EEESCCEEEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEE
T ss_pred CCCCEEEecCcc-EEEeCCCcEEEEEEE-EecCCCEEEEEECCEECcCCCCEEEEEeCCEEEEEECCCCcccCEEEEEEE
Confidence 456778888877 899999999999955 56778899999999887654 3347999999999999999999
Q ss_pred EcCCCCeEEEEEEEEe
Q psy14542 79 SADDDSAQMSAQVILG 94 (371)
Q Consensus 79 ~~~~~~~~~~~~l~v~ 94 (371)
.|..|.....+.|.|.
T Consensus 82 ~n~~g~~~~~~~l~V~ 97 (99)
T 3puc_A 82 KNSAGSVSSSCKLTIK 97 (99)
T ss_dssp EETTEEEEEEEEEEEE
T ss_pred EeCCCcEeEEEEEEEE
Confidence 9998888888888775
No 457
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex, alternative splicing, ATP-binding, calcium, calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Probab=99.47 E-value=2.7e-13 Score=95.06 Aligned_cols=85 Identities=27% Similarity=0.339 Sum_probs=72.7
Q ss_pred cccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC---------CeeEEEEccCCcCCCeEEEEEE
Q psy14542 8 KSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN---------SDEVLVLDRVQREDAGMYQCHV 78 (371)
Q Consensus 8 ~~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~---------~~~~l~i~~~~~~d~G~Y~C~~ 78 (371)
..+|.+...|.. ..+.+|+.+.|.|.+ .+.|.+.+.|++++..+... ...+|.|.+++.+|+|.|+|.+
T Consensus 11 ~~~P~~~~~~~~-~~v~~G~~v~l~C~~-~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a 88 (107)
T 3irg_B 11 GSPPCFLRFPRP-VRVVSGAEAELKCVV-LGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAGVYVCRA 88 (107)
T ss_dssp CEEEEEEECCCC-EEEETTSCEEEEEEE-EEESCCEEEEEETTEECCCCSSEECCEETTEEEEEESSCCGGGCEEEEEEE
T ss_pred CCCCeeEcCCcc-EEEeCCCeEEEEEEE-eecCCCEEEEEECCeECCCCCcEEEEeCCCEEEEEEccCCHHhCEEEEEEE
Confidence 457888888877 999999999999955 66778899999999887654 2338999999999999999999
Q ss_pred EcCCCCeEEEEEEEEe
Q psy14542 79 SADDDSAQMSAQVILG 94 (371)
Q Consensus 79 ~~~~~~~~~~~~l~v~ 94 (371)
.|..|.....+.|.|.
T Consensus 89 ~n~~g~~~~~~~l~V~ 104 (107)
T 3irg_B 89 RNAAGEAYAAAAVTVL 104 (107)
T ss_dssp EETTEEEEEEEEEEEE
T ss_pred EcCCCcEEEEEEEEEE
Confidence 9998888888888887
No 458
>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A
Probab=99.47 E-value=1.2e-13 Score=95.56 Aligned_cols=75 Identities=31% Similarity=0.568 Sum_probs=65.0
Q ss_pred eecCCeEEEEEEeecCCCCceEEEeCCcccccCCce---E--EecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEE
Q psy14542 234 VKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRI---Q--RIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQY 308 (371)
Q Consensus 234 ~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~---~--~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 308 (371)
+..|+.+.|.|.+.|.|.+.+.|++++..+....+. . ..++.|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus 20 v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V 99 (100)
T 3caf_A 20 VPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 99 (100)
T ss_dssp ECTTCCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred ecCCCEEEEEEEccccCCCEEEEEECCEEcccccccccEEEecCeEEEEEccCCcCCCEEEEEEEEeCCCEEEEEEEEEE
Confidence 889999999999999999999999999887665432 2 23358999999999999999999999999888888876
No 459
>3u1s_H FAB PGT145 heavy chain; IGG, broadly neutralizing antibody, HIV-1 GP120, immune SYST; HET: TYS; 2.30A {Homo sapiens}
Probab=99.47 E-value=1.2e-12 Score=107.78 Aligned_cols=194 Identities=10% Similarity=0.138 Sum_probs=108.4
Q ss_pred CceeeecCCcEEEEEEecCC-CCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEec-----cceEE
Q psy14542 104 NQVVVDVGHRIELHCRVSPK-RLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLS-----SGELI 177 (371)
Q Consensus 104 ~~~~~~~g~~v~l~C~~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~-----~~~l~ 177 (371)
+...+.+|++++|.|.+.+. .....+.|++.... ......+.+.... ...+......+++.+.. +..|.
T Consensus 31 ~~~~~~~G~~v~L~C~~s~~~~~~~~v~W~rq~~~--~~~~~l~~~~~~~---~~~~~~~~~~~R~~~~~~~~~~~~sL~ 105 (267)
T 3u1s_H 31 GAEVKKPGSSVKVSCKASGNSFSNHDVHWVRQATG--QGLEWMGWMSHEG---DKTGLAQKFQGRVTITRDSGASTVYME 105 (267)
T ss_dssp CCEEECTTCCEEEEEEEGGGGGGTSEEEEEEECTT--SCCEEEEEECTTS---SCEEECGGGTTTEEEEECGGGCCEEEE
T ss_pred CCEEEeCCCcEEEEEEeeCCccCCCEEEEEEECCC--CCcEEEEEEeCCC---CceecCcccCCcEEEEEcCCCCEEEEE
Confidence 34445899999999999652 12268999984210 0111111221100 00000000123444332 24599
Q ss_pred EEEeecCCccceeEEEeeccc-----cc------------e-ee---eeeccceeeeecchhccccceeeeeeeeeeeec
Q psy14542 178 IHQVDESDRYRSYQCRGVNKL-----TG------------A-SL---LSVNRGRLSLTENKRLLSAAKMFEKHRILNVKK 236 (371)
Q Consensus 178 i~~~~~~d~~g~y~C~~~~~~-----~~------------~-~~---~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~~~~ 236 (371)
|.+++.+| +|.|.|.+.+.- .+ . .. .......+.|.... ..+|.+........ ...
T Consensus 106 I~~v~~~D-sG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~l~V~~~~-~~~P~v~~~~~~~~-~~~ 182 (267)
T 3u1s_H 106 LRGLTADD-TAIYYCLTGSKHRLRDYFLYNEYGPNYEEWGDYLATLDVWGHGTAVTVSSAS-TKGPSVFPLAPSSK-STS 182 (267)
T ss_dssp ECSCCGGG-CEEEEEEEEEEEEEEEEEECCTTSSCEEEEEEEEEEEEEECCCEEEEECCCC-CBCCEEEEECCCGG-GEE
T ss_pred ECCCChhh-CEEEEEEECcCCcccccccccccccccccccccccccceecCCeEEEecCCC-CCCCEEEEecCCcc-cCC
Confidence 99999999 999999986210 00 0 10 01112245554221 13455543232223 467
Q ss_pred CCeEEEEEEeec-CC-CCceEEEeCCcccccC----------CceEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEE
Q psy14542 237 DESVILPCSAQG-NP-LPTIKWYKQDSPVEES----------DRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQL 304 (371)
Q Consensus 237 g~~~~l~C~~~~-~p-~~~v~W~~~~~~~~~~----------~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~ 304 (371)
|+.++|.|.+.+ +| .+.+.| ++..+..+ +......+.|.|.....+| |.|+|.+.|..+......
T Consensus 183 g~~~~l~C~~~~~~p~~~~v~W--~~~~~~~~~~~~~~~~~~~g~y~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~ 259 (267)
T 3u1s_H 183 GGTAALGCLVKDYFPEPVTVSW--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDK 259 (267)
T ss_dssp TTEEEEEEEEEEEBSSCCEEEE--GGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGGGT-CCCEEEEEEGGGTEEEEE
T ss_pred CCcEEEEEEEeEEECCCeEEEE--CCcccCCCEEeCCceECCCCCEEEEEEEEECchhcCC-CEEEEEEEECCCCcceEE
Confidence 899999999987 45 467999 65544321 1111122468898888888 999999999887765555
Q ss_pred EEEE
Q psy14542 305 FIQY 308 (371)
Q Consensus 305 ~l~v 308 (371)
.+.+
T Consensus 260 ~~~~ 263 (267)
T 3u1s_H 260 KVEP 263 (267)
T ss_dssp ECCC
T ss_pred Eccc
Confidence 5443
No 460
>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4
Probab=99.47 E-value=6.6e-13 Score=91.37 Aligned_cols=75 Identities=24% Similarity=0.398 Sum_probs=64.2
Q ss_pred eecCCeEEEEEEee-cCCCCceEEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEEe
Q psy14542 234 VKKDESVILPCSAQ-GNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYA 309 (371)
Q Consensus 234 ~~~g~~~~l~C~~~-~~p~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~ 309 (371)
+..|+.+.|.|.+. +.|.+.+.|++++...... +....++.|.|.++..+|+|.|+|.|.|..|.....+.|.|.
T Consensus 22 v~~G~~v~l~C~~~~~~p~~~v~W~k~~~~~~~~-~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~ 97 (98)
T 1gl4_B 22 VRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPS-RAMDFNGILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHVQ 97 (98)
T ss_dssp ECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCCT-TEEEETTEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred EecCCCEEEEEeCCCCCCCcEEEEEeCCCCCCCc-eeecCCCEEEEeCCChhhCEEEEEEecCCCCccccEEEEEEe
Confidence 89999999999998 6899999999986544333 334557799999999999999999999999999888888875
No 461
>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens}
Probab=99.47 E-value=7.9e-13 Score=93.61 Aligned_cols=93 Identities=15% Similarity=0.304 Sum_probs=75.7
Q ss_pred eeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccCCceEEe-cc---eEEEeccCCCC
Q psy14542 210 RLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI-GS---SLSISHVEESD 285 (371)
Q Consensus 210 ~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~-~~---~l~i~~~~~~d 285 (371)
.|.|.. .+|.+...+.... +..|+.+.|.|.+.+. |.+.|++++..+..+.++... ++ .|.|.++..+|
T Consensus 12 ~l~V~~----~pp~~~~~~~~~~-v~~G~~v~l~C~~~~~--p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D 84 (113)
T 2edh_A 12 MLTVRA----LPIKFTEGLRNEE-ATEGATAVLRCELSKM--APVEWWKGHETLRDGDRHSLRQDGARCELQIRGLVAED 84 (113)
T ss_dssp CCCCCC----SCCCEEECCCCCE-ECTTSCEEEEEEESSC--CCCEEEESSSBCCCSSSEEEEEETTEEEEEECSCCSTT
T ss_pred EEEEEc----CCCcccccCCceE-EeCCCeEEEEEEECCC--CcEEEEECCEECCCCCcEEEEECCCEEEEEECCCChhh
Confidence 666663 3356666666666 9999999999999765 789999999999887777632 33 79999999999
Q ss_pred CeEEEEEEEcCCCCceeEEEEEEecCcc
Q psy14542 286 SGVWNCVANNSEGQDKMQLFIQYAHGKY 313 (371)
Q Consensus 286 ~G~Y~C~a~n~~g~~~~~~~l~v~~~p~ 313 (371)
+|.|+|.| |.....+.|.|..+|.
T Consensus 85 ~G~Y~C~a----~~~~~~~~l~V~~~p~ 108 (113)
T 2edh_A 85 AGEYLCMC----GKERTSAMLTVRAMPS 108 (113)
T ss_dssp CEEEEEEE----TTEEEEEEEEECCCCC
T ss_pred CEEEEEEe----CCCCEEEEEEEeCCCC
Confidence 99999999 7788889999988776
No 462
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=99.46 E-value=2.3e-13 Score=96.58 Aligned_cols=85 Identities=20% Similarity=0.271 Sum_probs=68.7
Q ss_pred cceEEEeCCCcEEEeccCcEEEEEEecC--CCCCCeeEEEeCC---------EEEee--C-------CeeEEEEccCCcC
Q psy14542 10 SLSIEMSPSGQVVVDVGHRIELHCRVSP--KRLSSAKAWLKDG---------LVLRR--N-------SDEVLVLDRVQRE 69 (371)
Q Consensus 10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~--~~~~~~~~W~~~~---------~~~~~--~-------~~~~l~i~~~~~~ 69 (371)
.+.+...|.. +.+.+|++++|.|.+.. +.|.+.|.|||+. ..+.. . ...+|.|.+++.+
T Consensus 7 ~~~F~~~P~~-v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~ 85 (126)
T 2dav_A 7 GILFIEKPQG-GTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDN 85 (126)
T ss_dssp SCSCCSCCCC-CEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTT
T ss_pred ccEEEEcCCC-eEEeCCCCEEEEEEEeccCCCCCCcEEEeeCcCcccCCCCCceEEEccccccccccceEEEEEccCCcc
Confidence 3556777877 89999999999997653 2588999999973 21111 0 2588999999999
Q ss_pred CCeEEEEEEEcCCCCeEEEEEEEEec
Q psy14542 70 DAGMYQCHVSADDDSAQMSAQVILGG 95 (371)
Q Consensus 70 d~G~Y~C~~~~~~~~~~~~~~l~v~~ 95 (371)
|+|.|+|++.|..+..+..+.|+|..
T Consensus 86 DaG~Y~Cevsn~~g~~~~~~~L~V~~ 111 (126)
T 2dav_A 86 FAGNYRCEVTYKDKFDSCSFDLEVHE 111 (126)
T ss_dssp SCEEEEEEEECSSCEEEECCEEEEEC
T ss_pred cCEEEEEEEEeCCCcEEEEEEEEEEe
Confidence 99999999999998888999999884
No 463
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}
Probab=99.45 E-value=3e-13 Score=96.16 Aligned_cols=85 Identities=16% Similarity=0.300 Sum_probs=72.2
Q ss_pred cccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC-----------CeeEEEEccCCcCCCeEEEE
Q psy14542 8 KSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN-----------SDEVLVLDRVQREDAGMYQC 76 (371)
Q Consensus 8 ~~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~-----------~~~~l~i~~~~~~d~G~Y~C 76 (371)
..+|.+...|.. ..+.+|++++|.|. ..+.|.+.+.|++++..+... ...+|.|.+++.+|+|.|+|
T Consensus 13 ~~~p~f~~~p~~-~~v~~G~~v~L~C~-~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C 90 (116)
T 2kkq_A 13 KRAPMFIYKPQS-KKVLEGDSVKLECQ-ISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKDVNKKDAGWYTV 90 (116)
T ss_dssp CBCCCBSSCCCC-EEEETTEEEEEEEE-BCCBSCCEEEEEETTEECCCCBTTEEEEECTTCEEEEEEEEECGGGCEEEEE
T ss_pred CCCCeEEeCCCc-EEEeCCCcEEEEEE-EeccCCCEEEEEECCEECcCCCCeEEEEeCCCCeEEEEECCCCcccCEEEEE
Confidence 346777778888 89999999999995 457788899999999887642 22389999999999999999
Q ss_pred EEEcCCCCeEEEEEEEEe
Q psy14542 77 HVSADDDSAQMSAQVILG 94 (371)
Q Consensus 77 ~~~~~~~~~~~~~~l~v~ 94 (371)
.+.|..|.....+.|.|.
T Consensus 91 ~a~N~~G~~~~~~~l~V~ 108 (116)
T 2kkq_A 91 SAVNEAGVTTCNTRLDVT 108 (116)
T ss_dssp EEEETTEEEEEEEEEEEE
T ss_pred EEEcCCCeEEEEEEEEEe
Confidence 999999888888888887
No 464
>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X
Probab=99.45 E-value=4.1e-13 Score=96.56 Aligned_cols=80 Identities=23% Similarity=0.399 Sum_probs=66.1
Q ss_pred eecCCeEEEEEEeecC--CCCceEEEeCCccccc-----CCc-e------EEecceEEEeccCCCCCeEEEEEEEcCCCC
Q psy14542 234 VKKDESVILPCSAQGN--PLPTIKWYKQDSPVEE-----SDR-I------QRIGSSLSISHVEESDSGVWNCVANNSEGQ 299 (371)
Q Consensus 234 ~~~g~~~~l~C~~~~~--p~~~v~W~~~~~~~~~-----~~~-~------~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~ 299 (371)
+..|+.+.|.|.+.|. |.+.+.|++++..+.. ..+ . ....+.|.|.++..+|+|.|+|.|.|..|.
T Consensus 20 v~~G~~v~L~C~~~g~p~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~ 99 (122)
T 3s35_X 20 LSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMT 99 (122)
T ss_dssp EEETCCEEEEEEEEECTTCCCEEEEECSCTTCCHHHHBCCSCCEEEETTEEEEEEEEEESSCCGGGCEEEEEEEECSSCE
T ss_pred EecCCeEEEEEEEEcCCCCcEEEEEECCCcccCCceeeeeccccccCCceeeEEEEEEECCCCcccCEEEEEEEccCCCc
Confidence 8899999999999984 4568999999885431 111 1 123457999999999999999999999999
Q ss_pred ceeEEEEEEecCcc
Q psy14542 300 DKMQLFIQYAHGKY 313 (371)
Q Consensus 300 ~~~~~~l~v~~~p~ 313 (371)
....+.|.|.++|.
T Consensus 100 ~~~~~~l~V~~~p~ 113 (122)
T 3s35_X 100 KKNSTFVRVHEKPF 113 (122)
T ss_dssp EEEEEEEEEEEEEC
T ss_pred eEEEEEEEEeccCe
Confidence 99999999999888
No 465
>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus}
Probab=99.45 E-value=5.6e-13 Score=93.56 Aligned_cols=91 Identities=19% Similarity=0.285 Sum_probs=70.8
Q ss_pred cccceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEeCCc-ccc-------cCCceEE-----ecceEEEeccCCCCC
Q psy14542 220 LSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDS-PVE-------ESDRIQR-----IGSSLSISHVEESDS 286 (371)
Q Consensus 220 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~-~~~-------~~~~~~~-----~~~~l~i~~~~~~d~ 286 (371)
..|.+...+.... +..|+.+.|.|.+.+.|.+.+.|++++. .+. ...++.. ....|.|.++..+|+
T Consensus 5 ~~p~~~~~~~~~~-v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~D~ 83 (108)
T 3m45_A 5 GSQGQFPLTQNVT-VVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISVSDVSLSDE 83 (108)
T ss_dssp ---CCCEECCCEE-EETTSCEEEEEEESSCSSCCEEEECTTCCEEEETTEECSCCTTEEEEEESSSEEEEEECSCCGGGC
T ss_pred cCCCccccCCeeE-EEeCCcEEEEeEEcCCCccEEEEEcCCCceEEEcCCcccccCcEEEeecCCCcEEEEECCCChhHC
Confidence 3455555566666 9999999999999999999999998775 211 2234443 345799999999999
Q ss_pred eEEEEEEEcCCCCceeEEEEEEecCc
Q psy14542 287 GVWNCVANNSEGQDKMQLFIQYAHGK 312 (371)
Q Consensus 287 G~Y~C~a~n~~g~~~~~~~l~v~~~p 312 (371)
|.|+|.|.| .|.....+.|.|..+|
T Consensus 84 G~Y~C~~~n-~~~~~~~~~L~V~~~P 108 (108)
T 3m45_A 84 GQYTCSLFT-MPVKTSKAYLTVLGVP 108 (108)
T ss_dssp EEEEEEECS-SSCEEEEEEEEEECCC
T ss_pred eEEEEEEEc-CCCcEEEEEEEEEcCC
Confidence 999999999 8888899999998765
No 466
>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.45 E-value=3.8e-13 Score=93.52 Aligned_cols=88 Identities=19% Similarity=0.289 Sum_probs=72.4
Q ss_pred cccceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccCCceEEe--c--ceEEEeccCCCCCeEEEEEEEc
Q psy14542 220 LSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI--G--SSLSISHVEESDSGVWNCVANN 295 (371)
Q Consensus 220 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~--~--~~l~i~~~~~~d~G~Y~C~a~n 295 (371)
.+|.+...+.... +..|+.+.|.|.+.+ |.+.+.|++++..+....++... + ..|.|.++..+|+|.|+|.|.|
T Consensus 7 ~pp~~~~~~~~~~-v~~G~~v~l~C~~~~-~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n 84 (103)
T 2edf_A 7 GPAAIIKPLEDQW-VAPGEDVELRCELSR-AGTPVHWLKDRKAIRKSQKYDVVCEGTMAMLVIRGASLKDAGEYTCEVEA 84 (103)
T ss_dssp CCCCEEECCCCEE-ECTTSCEEECCEESS-SSCCCCEEESSCBCCCSSSEEEEEETTEEEEEESSCCTTTCSEEEEECSS
T ss_pred CCcEEEecCCccE-EcCCCCEEEEEEEeC-CCCcEEEEECCEEccCCCCEEEEECCCEEEEEECCCCcccCEEEEEEEcc
Confidence 4566666666666 999999999999987 78899999999998877776632 2 2699999999999999999998
Q ss_pred CCCCceeEEEEEEecCcc
Q psy14542 296 SEGQDKMQLFIQYAHGKY 313 (371)
Q Consensus 296 ~~g~~~~~~~l~v~~~p~ 313 (371)
...++.|.|..+|.
T Consensus 85 ----~~~~~~l~V~~~p~ 98 (103)
T 2edf_A 85 ----SKSTASLHVEEKAS 98 (103)
T ss_dssp ----CEEEEEEEECCCSS
T ss_pred ----CCcEEEEEEeCCCC
Confidence 47778888887776
No 467
>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=99.45 E-value=5.3e-13 Score=92.77 Aligned_cols=85 Identities=13% Similarity=0.145 Sum_probs=68.4
Q ss_pred ceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccCC--ceEEec----ceEEEeccCCCCCeEEEEEEEcC
Q psy14542 223 AKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESD--RIQRIG----SSLSISHVEESDSGVWNCVANNS 296 (371)
Q Consensus 223 ~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~--~~~~~~----~~l~i~~~~~~d~G~Y~C~a~n~ 296 (371)
.+...+.... +..|+.+.|.|.+.+ |.+.+.|++++..+.... ++.... ..|.|.++..+|+|.|+|.|.|
T Consensus 9 ~~~~~~~~~~-v~~G~~v~l~C~~~~-~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n- 85 (103)
T 1x44_A 9 MVTKQLEDTT-AYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTG- 85 (103)
T ss_dssp CCSBCCCCEE-EETTEEEEEEEECSS-SSCCCEEEETTEECCCSTTCSEEEEEETTEEEEEEEEECTTTCSEEEEEETT-
T ss_pred eeeccCCCEE-EECCCCEEEEEEecC-CCCeEEEEECCEECCCCCceEEEEEEcCCEEEEEECCCCcccCEEEEEEECC-
Confidence 3555555555 899999999999977 778999999999888776 444322 5799999999999999999987
Q ss_pred CCCceeEEEEEEecCcc
Q psy14542 297 EGQDKMQLFIQYAHGKY 313 (371)
Q Consensus 297 ~g~~~~~~~l~v~~~p~ 313 (371)
...++.|.|..+|.
T Consensus 86 ---~~~~~~l~V~~~p~ 99 (103)
T 1x44_A 86 ---GQSSAKLSVDLKSG 99 (103)
T ss_dssp ---EEEEEEEEEECCCS
T ss_pred ---CcEEEEEEEeCCCC
Confidence 56777888887665
No 468
>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4
Probab=99.45 E-value=2.7e-13 Score=93.34 Aligned_cols=87 Identities=18% Similarity=0.231 Sum_probs=68.9
Q ss_pred cccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC----CeeEEEEccCCcCCCeEEEEEEEcCCC
Q psy14542 8 KSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN----SDEVLVLDRVQREDAGMYQCHVSADDD 83 (371)
Q Consensus 8 ~~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~----~~~~l~i~~~~~~d~G~Y~C~~~~~~~ 83 (371)
..++.+.+.+.....+.+|++++|.|.+..+.|.+.+.|+|++...... ...+|.|.+++.+|+|.|+|.+.|..|
T Consensus 7 ~~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g 86 (98)
T 1gl4_B 7 SKPIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFNGILTIRNVQPSDAGTYVCTGSNMFA 86 (98)
T ss_dssp --CEEEEECSCCEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCCTTEEEETTEEEECSCCGGGCEEEEEEEECSSC
T ss_pred CCCcEEEEeCCCCeEEecCCCEEEEEeCCCCCCCcEEEEEeCCCCCCCceeecCCCEEEEeCCChhhCEEEEEEecCCCC
Confidence 4466777777665799999999999976656788999999964322211 456899999999999999999999988
Q ss_pred CeEEEEEEEEe
Q psy14542 84 SAQMSAQVILG 94 (371)
Q Consensus 84 ~~~~~~~l~v~ 94 (371)
.....+.|.|.
T Consensus 87 ~~~~~~~l~V~ 97 (98)
T 1gl4_B 87 MDQGTATLHVQ 97 (98)
T ss_dssp EEEEEEEEEEC
T ss_pred ccccEEEEEEe
Confidence 88888888775
No 469
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}
Probab=99.44 E-value=1.8e-13 Score=93.55 Aligned_cols=82 Identities=22% Similarity=0.462 Sum_probs=67.7
Q ss_pred ccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC-----CeeEEEEccCCcCCCeEEEEEEEcCCC
Q psy14542 9 SSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN-----SDEVLVLDRVQREDAGMYQCHVSADDD 83 (371)
Q Consensus 9 ~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~-----~~~~l~i~~~~~~d~G~Y~C~~~~~~~ 83 (371)
.++.+...|.. ..+.+|+.+.|.|.+. +.| +.+.|+|++..+... ....|.|.+++.+|+|.|+|.+.|..|
T Consensus 8 ~pp~~~~~~~~-~~v~~G~~v~l~C~~~-g~p-p~i~W~k~g~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g 84 (95)
T 2ckn_A 8 QPWGVPVEVES-LLVHPGDLLQLRCRLR-DDV-QSINWLRDGVQLVESNRTRITGEEVEVRDSIPADSGLYACVTSSPSG 84 (95)
T ss_dssp CSCCBTTBBCC-EEECTTSCEEEECCEE-SSC-CEEEEEBTTBCCCCCSSEEECSSEEEESSCCGGGSEEEEEEEEETTE
T ss_pred CCCEEEcCcce-EEEcCCCeEEEEEECC-CCC-CceEEEECCEecCCCCCEEEeCCEEEECCCChHHCEEEEEEeccCCC
Confidence 45667677777 8999999999999654 456 699999998876543 456899999999999999999999888
Q ss_pred CeEEEEEEEE
Q psy14542 84 SAQMSAQVIL 93 (371)
Q Consensus 84 ~~~~~~~l~v 93 (371)
.....+.|.|
T Consensus 85 ~~~~~~~l~V 94 (95)
T 2ckn_A 85 SDTTYFSVNV 94 (95)
T ss_dssp EEEEEEEEEE
T ss_pred cEEEEEEEEE
Confidence 8777777776
No 470
>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=3.3e-13 Score=95.85 Aligned_cols=95 Identities=12% Similarity=0.187 Sum_probs=76.3
Q ss_pred eeeeecchhccccceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccCCceEEe-----cceEEEeccCCC
Q psy14542 210 RLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI-----GSSLSISHVEES 284 (371)
Q Consensus 210 ~l~v~~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~-----~~~l~i~~~~~~ 284 (371)
.|.|.. .++.+...+.... +.+|+.+.|.|.+.+.|.|.+.|++++..+..+.++... ...|.|.++..+
T Consensus 6 ~l~V~~----~p~~~~~~~~~~~-v~~G~~v~l~C~~~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~ 80 (115)
T 2cr6_A 6 SGLVQG----RRVHIIEDLEDVD-VQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQPGGYHVLTLRQLALK 80 (115)
T ss_dssp CCCCCS----SCCEEEECCCEEE-EETTSCEECCCEEESTTCCSCEEEESSCEECCSSSCCBCCBTTTBCCBEECSCCTT
T ss_pred EEEEcC----CCCeEeccCccEE-EeCCCcEEEEEEEcCCCCCccEEEECCEECCCCCcEEEEEcCCCEEEEEEcCCChh
Confidence 566662 2335555566666 999999999999999999999999999988877665432 237999999999
Q ss_pred CCeEEEEEEEcCCCCceeEEEEEEecCcc
Q psy14542 285 DSGVWNCVANNSEGQDKMQLFIQYAHGKY 313 (371)
Q Consensus 285 d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~ 313 (371)
|+|.|+|.+ |.....+.|.|..+|.
T Consensus 81 D~G~Y~C~~----g~~~~~~~L~V~~~p~ 105 (115)
T 2cr6_A 81 DSGTIYFEA----GDQRASAALRVTEKPS 105 (115)
T ss_dssp TCEEEEEEE----TTEECCEEEEEECCSS
T ss_pred hCEEEEEEE----CCeeEEEEEEEECCCc
Confidence 999999994 6777778999998887
No 471
>1zxq_A ICAM-2, intercellular adhesion molecule-2; immunoglobulin fold, cell adhesion, glycoprotein, transmembr; HET: NAG; 2.20A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4
Probab=99.44 E-value=1.7e-11 Score=93.28 Aligned_cols=127 Identities=13% Similarity=0.275 Sum_probs=91.8
Q ss_pred cceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEe--CCEEEeeC-CeeEEEEccCCcCCCeEEEEEEEcCCCCeE
Q psy14542 10 SLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLK--DGLVLRRN-SDEVLVLDRVQREDAGMYQCHVSADDDSAQ 86 (371)
Q Consensus 10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~--~~~~~~~~-~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~ 86 (371)
.+.+.+.|+. ..|..|+++.|.|...-.. ...+.|-- ++..+..+ ....|.|.+++ |+|.|.|.+.....+..
T Consensus 2 ~f~v~v~P~~-~~V~~G~S~~l~Cs~~c~~-p~~~glet~l~~~~~~~g~~w~~l~l~~vs--~~g~~~C~~~c~~~~~~ 77 (192)
T 1zxq_A 2 VFEVHVRPKK-LAVEPKGSLEVNCSTTCNQ-PEVGGLETSLNKILLDEQAQWKHYLVSNIS--HDTVLQCHFTCSGKQES 77 (192)
T ss_dssp CCCEEEESSE-EEECTTEEEEEEEEESCSS-CSEEEEECSSEEEEEEEETTEEEEEEEEEC--SCEEEEEEEEETTEEEE
T ss_pred CcEEEEeCCC-cEEeCCCcEEEEEECCCCC-ccccccccccCceEEcCCCCeEEEEEeccc--cCCeeEEEEECCCcceE
Confidence 4678889997 8899999999999764222 22355643 22223322 44679999998 78999999998766777
Q ss_pred EEEEEEEecceeeEecCC-ceeeecCCcEEEEEEecCCCCC--ceEEEeeCCEEeee
Q psy14542 87 MSAQVILGGELVEIASSN-QVVVDVGHRIELHCRVSPKRLS--SAKAWLKDGLVLRR 140 (371)
Q Consensus 87 ~~~~l~v~~~~~~~~~~~-~~~~~~g~~v~l~C~~~~~~~~--~~v~W~~~~~~~~~ 140 (371)
+.+.|+|+..|..+...+ ...+.+|+.++|.|.+.+..+. ..+.|++++..+..
T Consensus 78 ~~~~itVy~~P~~v~i~~~p~~~~~G~~~tL~C~v~~v~P~~~L~v~llrG~~~l~~ 134 (192)
T 1zxq_A 78 MNSNVSVYQPPRQVILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHY 134 (192)
T ss_dssp EEEEEEECBCCCCCEEEEESSEECTTSEEEEEEEECSCBCGGGEEEEEEETTEEEEE
T ss_pred EEEEEEEEeCCCCceEccCCccccCCCcEEEEEEeCCeECCCCcEEEEEcCCEEeee
Confidence 899999995444444443 2456899999999999875432 35899999988754
No 472
>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A
Probab=99.44 E-value=1.5e-12 Score=89.88 Aligned_cols=89 Identities=21% Similarity=0.246 Sum_probs=71.9
Q ss_pred cccceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccCCceEEe--c--ceEEEeccCCCCCeEEEEEEEc
Q psy14542 220 LSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI--G--SSLSISHVEESDSGVWNCVANN 295 (371)
Q Consensus 220 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~--~--~~l~i~~~~~~d~G~Y~C~a~n 295 (371)
.+|.+...+.....+..|+.+.|.|.+. .|.+.+.|++++..+..+.++... + ..|.|.++..+|+|.|+|.|
T Consensus 6 ~~p~~~~~~~~~~~v~~G~~v~l~C~~~-~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a-- 82 (100)
T 2yuv_A 6 SGAAFAKILDPAYQVDKGGRVRFVVELA-DPKLEVKWYKNGQEIRPSTKYIFEHKGCQRILFINNCQMTDDSEYYVTA-- 82 (100)
T ss_dssp SSCCEEECCCSCEEECTTEEEEEEEEES-CTTSCEEEEESSCBCCCBTTEEEEEETTEEEEEEEEECTTTCCEEEEEE--
T ss_pred CCCeEEecCCCccEEcCCCcEEEEEEec-CCCceEEEEECCEECCCCCCEEEEecCCEEEEEEcCCCcCcCEEEEEEE--
Confidence 3556665555422288999999999998 788999999999998877776532 2 26999999999999999999
Q ss_pred CCCCceeEEEEEEecCcc
Q psy14542 296 SEGQDKMQLFIQYAHGKY 313 (371)
Q Consensus 296 ~~g~~~~~~~l~v~~~p~ 313 (371)
|....++.|.|.++|.
T Consensus 83 --g~~~~~~~l~V~~~P~ 98 (100)
T 2yuv_A 83 --GDEKCSTELFVRSGPS 98 (100)
T ss_dssp --TTEEEEEEEEECCSCC
T ss_pred --CCceEEEEEEEecCCC
Confidence 7788889999988775
No 473
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Probab=99.43 E-value=5.4e-13 Score=100.13 Aligned_cols=92 Identities=15% Similarity=0.259 Sum_probs=74.9
Q ss_pred ecccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC----------CeeEEEEccCCcCCCeEEEE
Q psy14542 7 VKSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN----------SDEVLVLDRVQREDAGMYQC 76 (371)
Q Consensus 7 v~~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~----------~~~~l~i~~~~~~d~G~Y~C 76 (371)
+..+|.+...|.. ..+.+|+.++|.|.+ .+.|.+.+.|+|++..+... ....|.|.+++.+|+|.|+|
T Consensus 38 v~~~P~~~~~~~~-~~v~~G~~v~L~C~~-~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C 115 (154)
T 1fhg_A 38 PHVKPYFTKTILD-MEVVEGSAARFDCKV-EGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTC 115 (154)
T ss_dssp CCEEEEEEECCCC-EEEETTSCEEEEEEE-EEESCCEEEEEETTEECCCSSSEEEEECTTCEEEEEESSCCGGGCEEEEE
T ss_pred CCCCCeEEccCCc-EEEeCCCeEEEEEEE-EEecCCEEEEEECCEECCCCCcEEEEECCCCeEEEEECCCChhcCEEEEE
Confidence 3457788888887 999999999999954 56788899999999877654 24589999999999999999
Q ss_pred EEEcCCCCeEEEEEEEEecceeeEe
Q psy14542 77 HVSADDDSAQMSAQVILGGELVEIA 101 (371)
Q Consensus 77 ~~~~~~~~~~~~~~l~v~~~~~~~~ 101 (371)
.+.|..|.....+.|.|. .++.+.
T Consensus 116 ~a~N~~G~~~~~~~l~V~-~~p~~~ 139 (154)
T 1fhg_A 116 KAVNSLGEATCTAELLVE-TMGKEG 139 (154)
T ss_dssp EEEETTEEEEEEEEEEEE-CC----
T ss_pred EEEECCCeEEEEEEEEEe-CcCcCC
Confidence 999999988888899988 444443
No 474
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=1.6e-13 Score=97.98 Aligned_cols=85 Identities=24% Similarity=0.364 Sum_probs=71.9
Q ss_pred ccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC-------CeeEEEEccCCcCCCeEEEEEEEcC
Q psy14542 9 SSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN-------SDEVLVLDRVQREDAGMYQCHVSAD 81 (371)
Q Consensus 9 ~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~-------~~~~l~i~~~~~~d~G~Y~C~~~~~ 81 (371)
.+|.+...|.. ..+.+|+.++|.|. ..+.|.+.+.|+|++..+... .+++|.|.+++.+|+|.|+|.+.|.
T Consensus 7 ~pP~i~~~p~~-~~v~~G~~v~l~C~-~~g~p~p~i~W~k~g~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~ 84 (118)
T 2eo9_A 7 GPPVIRQGPVN-QTVAVDGTFVLSCV-ATGSPVPTILWRKDGVLVSTQDSRIKQLENGVLQIRYAKLGDTGRYTCIASTP 84 (118)
T ss_dssp CSCCCSBCCCC-EEEETTCEEEEECB-CCCSSCCEEEEEESSSBCCTTSTTEEEEETTEEEEESCCGGGCCCEEEEEECS
T ss_pred CCCEEEcCCCC-EEEcCCCeEEEEEE-EEecCCCEEEEEECCEECcCCCCeEEEccCCEEEEccCCcCCCEEEEEEEEcC
Confidence 46777777877 89999999999995 467788999999998776532 4558999999999999999999999
Q ss_pred CCCeEEEEEEEEec
Q psy14542 82 DDSAQMSAQVILGG 95 (371)
Q Consensus 82 ~~~~~~~~~l~v~~ 95 (371)
.|.....+.|.|.+
T Consensus 85 ~g~~~~~~~l~V~~ 98 (118)
T 2eo9_A 85 SGEATWSAYIEVQE 98 (118)
T ss_dssp SCEEEEECCEEEEC
T ss_pred CCcEEEEEEEEEEe
Confidence 99888888888873
No 475
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}
Probab=99.43 E-value=1.9e-12 Score=88.88 Aligned_cols=80 Identities=18% Similarity=0.310 Sum_probs=66.3
Q ss_pred EEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC---------CeeEEEEccCCcCCCeEEEEEEEcCCCC
Q psy14542 14 EMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN---------SDEVLVLDRVQREDAGMYQCHVSADDDS 84 (371)
Q Consensus 14 ~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~---------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~ 84 (371)
...|.. ..+.+|+++.|.|.+....|.+.+.|++++..+... ....|.|.+++.+|+|.|+|.+.|..|.
T Consensus 5 ~~~~~~-~~v~~G~~v~l~C~~~g~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~ 83 (97)
T 2bk8_A 5 SGQIMH-AVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKDITKLDDGTYRCKVVNDYGE 83 (97)
T ss_dssp ECCCCC-EEECTTCCEEEEEEEESCCTTCEEEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCE
T ss_pred eccCcC-EEEcCCCcEEEEEEEeccCCCCEEEEEECCEECcCCCCEEEEEcCCeEEEEEecCChhhCeEEEEEEECCCCe
Confidence 334445 899999999999965543478899999999877544 3348999999999999999999999998
Q ss_pred eEEEEEEEEe
Q psy14542 85 AQMSAQVILG 94 (371)
Q Consensus 85 ~~~~~~l~v~ 94 (371)
....+.|.|.
T Consensus 84 ~~~~~~l~V~ 93 (97)
T 2bk8_A 84 DSSYAELFVK 93 (97)
T ss_dssp EEEEEEEEET
T ss_pred EeEEEEEEEE
Confidence 8888888886
No 476
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A
Probab=99.43 E-value=6.7e-13 Score=93.06 Aligned_cols=84 Identities=23% Similarity=0.226 Sum_probs=67.5
Q ss_pred ccceEEEeCCCcEEEeccCcEEEEEEecCCCCC---CeeEEEeCCEEEeeC------------------CeeEEEEccCC
Q psy14542 9 SSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLS---SAKAWLKDGLVLRRN------------------SDEVLVLDRVQ 67 (371)
Q Consensus 9 ~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~---~~~~W~~~~~~~~~~------------------~~~~l~i~~~~ 67 (371)
+.|.+...|.. +.+.+|++++|.|.+. +.|. +.+.|+|++...... ...+|.|.+++
T Consensus 3 p~p~f~~~p~~-~~v~~G~~v~L~C~~~-g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~ 80 (108)
T 3cx2_A 3 PIGLFVMRPQD-GEVTVGGSITFSARVA-GASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQ 80 (108)
T ss_dssp CCCSCSBCCCC-EEEETTCCEEEEEEEE-CC-CCSCCEEEEEETTTEEGGGGCBTTEEEEEEEETTTTEEEEEEEECSCC
T ss_pred CccEEEeCCCc-EEEeCCCCEEEEEEEC-CCccCCCcEEEEccCCcccccccCCceEEEeeEEecccccceEEEEEecCC
Confidence 45667777877 8999999999999654 5666 899999976221100 25689999999
Q ss_pred cCCCeEEEEEEEcCCCCeEEEEEEEEe
Q psy14542 68 REDAGMYQCHVSADDDSAQMSAQVILG 94 (371)
Q Consensus 68 ~~d~G~Y~C~~~~~~~~~~~~~~l~v~ 94 (371)
.+|+|.|+|.+.|..|.....+.|.|.
T Consensus 81 ~~D~G~Y~C~a~N~~G~~~~~~~L~V~ 107 (108)
T 3cx2_A 81 PAFTGSYRCEVSTKDKFDCSNFNLTVH 107 (108)
T ss_dssp GGGCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred CccCEEEEEEEecCCCceEEEEEEEEe
Confidence 999999999999999999999998885
No 477
>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A
Probab=99.43 E-value=1.8e-12 Score=87.76 Aligned_cols=79 Identities=19% Similarity=0.266 Sum_probs=63.5
Q ss_pred ccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC---------CeeEEEEccCCcCCCeEEEEEEE
Q psy14542 9 SSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN---------SDEVLVLDRVQREDAGMYQCHVS 79 (371)
Q Consensus 9 ~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~---------~~~~l~i~~~~~~d~G~Y~C~~~ 79 (371)
.++.+...+.. ..+.+|+.++|.|.+. + +.+.+.|+|||..+... ...+|.|.+++.+|+|.|+|.+.
T Consensus 4 ~~~~~~~~~~~-~~v~~G~~v~l~C~v~-~-~~~~v~W~k~g~~i~~~~~~~i~~~g~~~~L~I~~v~~~D~G~Y~C~a~ 80 (93)
T 1waa_A 4 ALIEVEKPLYG-VEVFVGETAHFEIELS-E-PDVHGQWKLKGQPLAASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAA 80 (93)
T ss_dssp CCCCEEECCCC-EEEETTSCEEEEEEES-S-SSCCCEEEETTEECCCBTTEEEEEETTEEEEEECSCCGGGCEEEEEEET
T ss_pred CCcEeeccCcc-eEEeCCCCEEEEEEEC-C-CCCeEEEEECCEECcCCCCEEEEEECCEEEEEECCCChhhCEEEEEEEC
Confidence 46777777777 9999999999999765 3 34779999999988654 34589999999999999999997
Q ss_pred cCCCCeEEEEEEEEe
Q psy14542 80 ADDDSAQMSAQVILG 94 (371)
Q Consensus 80 ~~~~~~~~~~~l~v~ 94 (371)
|. ..+..|.|.
T Consensus 81 n~----~~sa~L~V~ 91 (93)
T 1waa_A 81 NT----KSAANLKVK 91 (93)
T ss_dssp TE----EEEEEEEEE
T ss_pred CC----cEEEEEEEE
Confidence 63 456667665
No 478
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=7.6e-13 Score=94.47 Aligned_cols=85 Identities=18% Similarity=0.304 Sum_probs=69.6
Q ss_pred ccceEEEe--CCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC--------CeeEEEEccCCcCCCeEEEEEE
Q psy14542 9 SSLSIEMS--PSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN--------SDEVLVLDRVQREDAGMYQCHV 78 (371)
Q Consensus 9 ~~~~~~~~--p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~--------~~~~l~i~~~~~~d~G~Y~C~~ 78 (371)
.+|.+.+. +.....+.+|+.+.|.|. ..+.|.+.+.|+|++..+... ....|.|.+++.+|+|.|+|.+
T Consensus 20 ~~P~i~~~~~~~~~~~v~~G~~~~l~C~-~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a 98 (118)
T 2e7c_A 20 EPPKIRLPRHLRQTYIRKVGEQLNLVVP-FQGKPRPQVVWTKGGAPLDTSRVHVRTSDFDTVFFVRQAARSDSGEYELSV 98 (118)
T ss_dssp EEEEECCCTTTSSCEEEESSSCEEEEEE-EEEESCCEEEEEETTEECCCSSCEEEECSSEEEEEESSCCTTTCEEEEEEE
T ss_pred cCCeEecCcccCCCEEEECCCEEEEEEE-EccCCCCEEEEEECCEECCCCcEEEEECCCeEEEEECCCChhcCEEEEEEE
Confidence 35666543 233488999999999995 457788999999999887632 3566999999999999999999
Q ss_pred EcCCCCeEEEEEEEEe
Q psy14542 79 SADDDSAQMSAQVILG 94 (371)
Q Consensus 79 ~~~~~~~~~~~~l~v~ 94 (371)
.|..|.....+.|.|.
T Consensus 99 ~N~~G~~~~~~~l~V~ 114 (118)
T 2e7c_A 99 QIENMKDTATIRIRVV 114 (118)
T ss_dssp ECSSCEECCEEEEEEE
T ss_pred EeCCCeEEEEEEEEEE
Confidence 9999988888888887
No 479
>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}
Probab=99.42 E-value=1e-12 Score=86.95 Aligned_cols=68 Identities=25% Similarity=0.361 Sum_probs=56.6
Q ss_pred EEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC---------CeeEEEEccCCcCCCeEEEEEEEcCCCCeEEEEEE
Q psy14542 21 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN---------SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQV 91 (371)
Q Consensus 21 ~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~---------~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l 91 (371)
+.+.+|+++.|.|.+ .+ |.+.+.|+|||..+... ...+|.|.+++.+|+|.|+|.|.+ ....+.|
T Consensus 6 v~~~~G~~v~l~C~v-s~-p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n----~~~~a~l 79 (84)
T 2lu7_A 6 VRSTPGGDLELVVHL-SG-PGGPVRWYKDGERLASQGRVQLEQAGARQVLRVQGARSGDAGEYLCDAPQ----DSRIFLV 79 (84)
T ss_dssp EEECTTSCEEEECCC-SC-CSTTCEEEETTEECCCCSSEEEEECSSCEEEEESSCSSTTCEEEEEECTT----TCEEEEE
T ss_pred EEEecCCCEEEEEEE-CC-CCcEEEEEECCEEccccccEEEeecCCeEEEEecCCCCcccEEEEEEECC----EEEEEEE
Confidence 789999999999965 44 77889999999988765 446899999999999999999843 4566777
Q ss_pred EEe
Q psy14542 92 ILG 94 (371)
Q Consensus 92 ~v~ 94 (371)
.|.
T Consensus 80 ~V~ 82 (84)
T 2lu7_A 80 SVE 82 (84)
T ss_dssp EEC
T ss_pred EEE
Confidence 776
No 480
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=3.9e-13 Score=94.68 Aligned_cols=85 Identities=16% Similarity=0.258 Sum_probs=71.4
Q ss_pred cccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC-----------CeeEEEEccCCcCCCeEEEE
Q psy14542 8 KSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN-----------SDEVLVLDRVQREDAGMYQC 76 (371)
Q Consensus 8 ~~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~-----------~~~~l~i~~~~~~d~G~Y~C 76 (371)
..+|.+...|.. ..+.+|+.+.|.|.+ .+.|.+.+.|+|++..+... ....|.|.+++.+|+|.|+|
T Consensus 6 ~~~P~~~~~~~~-~~v~~G~~v~l~C~~-~g~p~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C 83 (110)
T 2dm2_A 6 SGAPFFEMKLKH-YKIFEGMPVTFTCRV-AGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTI 83 (110)
T ss_dssp SCCCCBSSCCCC-EEEETTCCEEEEEEB-CCSSCCEEEEECSSCBCCTTCSSEEEEECTTCEEEEEESSCCTTTCSCCEE
T ss_pred CCCCEEEecCcC-eEEeCCCeEEEEEEE-EecCCCEEEEEECCEECCCCCCeEEEEECCCcEEEEEECCCChhhCEEEEE
Confidence 346777777777 899999999999954 57788899999988776542 22379999999999999999
Q ss_pred EEEcCCCCeEEEEEEEEe
Q psy14542 77 HVSADDDSAQMSAQVILG 94 (371)
Q Consensus 77 ~~~~~~~~~~~~~~l~v~ 94 (371)
.+.|..|.....+.|.|.
T Consensus 84 ~a~N~~g~~~~~~~l~V~ 101 (110)
T 2dm2_A 84 MAANPQGRISCTGRLMVQ 101 (110)
T ss_dssp EEECTTCCEEECCCEEEE
T ss_pred EEEECCCeEEEEEEEEEE
Confidence 999999998888888887
No 481
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing, ATP-binding, calcium, calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Probab=99.42 E-value=6.2e-13 Score=91.89 Aligned_cols=83 Identities=19% Similarity=0.385 Sum_probs=69.8
Q ss_pred cceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC-----------CeeEEEEccCCcCCCeEEEEEE
Q psy14542 10 SLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN-----------SDEVLVLDRVQREDAGMYQCHV 78 (371)
Q Consensus 10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~-----------~~~~l~i~~~~~~d~G~Y~C~~ 78 (371)
+|.+...|.. ..+.+|+.+.|.|.+ .+.|.+.+.|++++..+... ...+|.|.+++.+|+|.|+|.+
T Consensus 5 pP~i~~~~~~-~~~~~G~~~~l~C~~-~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a 82 (100)
T 3irg_A 5 PPKIEALPSD-ISIDEGKVLTVACAF-TGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTLSL 82 (100)
T ss_dssp EEEECCCCSE-EEEETTSEEEEEEEE-EEESCCEEEEEETTEECCTTGGGTEEEEECSSEEEEEESSCCGGGCEEEEEEE
T ss_pred CCeeecCCCc-EEEcCCCcEEEEEEE-EEcCCCceEEEECCEEeecCCCCEEEEEecCCEEEEEEeecCcccCEEEEEEE
Confidence 5667666766 899999999999954 56778899999999887532 2378999999999999999999
Q ss_pred EcCCCCeEEEEEEEEe
Q psy14542 79 SADDDSAQMSAQVILG 94 (371)
Q Consensus 79 ~~~~~~~~~~~~l~v~ 94 (371)
.|..|.....+.|.|.
T Consensus 83 ~n~~g~~~~~~~l~V~ 98 (100)
T 3irg_A 83 GNEFGSDSATVNIHIR 98 (100)
T ss_dssp EETTEEEEEEEEEEEE
T ss_pred EeCCCcEEEEEEEEEE
Confidence 9998888888888775
No 482
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A
Probab=99.41 E-value=1.6e-13 Score=95.84 Aligned_cols=84 Identities=19% Similarity=0.345 Sum_probs=71.4
Q ss_pred ccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC---------CeeEEEEccCCcCCCeEEEEEEE
Q psy14542 9 SSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN---------SDEVLVLDRVQREDAGMYQCHVS 79 (371)
Q Consensus 9 ~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~---------~~~~l~i~~~~~~d~G~Y~C~~~ 79 (371)
..+.+...|.. ..+.+|+++.|.|.+ .+.|.+.+.|++++..+... ...+|.|.+++.+|+|.|+|.+.
T Consensus 13 ~~~~i~~~p~~-~~v~~G~~v~L~C~~-~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~ 90 (106)
T 1nct_A 13 LAARILTKPRS-MTVYEGESARFSCDT-DGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVE 90 (106)
T ss_dssp CCCEEEECCCC-EEESSSSCEECCEEE-ECSSCCBCCBCSSSSCCTTCSSEEEEECSSEEEEEECCCCSSCCSEEEECCB
T ss_pred CCCEEEECCCC-EEEeCCCcEEEEEEE-EEcCCCEEEEEECCEECCCCCCEEEEECCCEEEEEECcCCchhCEEEEEEEE
Confidence 35778888888 999999999999955 56788899999988665433 35789999999999999999999
Q ss_pred cCCCCeEEEEEEEEe
Q psy14542 80 ADDDSAQMSAQVILG 94 (371)
Q Consensus 80 ~~~~~~~~~~~l~v~ 94 (371)
|..|.....+.|.|.
T Consensus 91 N~~G~~~~~~~l~V~ 105 (106)
T 1nct_A 91 NSEGKQEAEFTLTIQ 105 (106)
T ss_dssp CSSCBCCEEEEEEEC
T ss_pred eCCCeEEEEEEEEEE
Confidence 999988888888875
No 483
>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}
Probab=99.41 E-value=9.8e-13 Score=88.51 Aligned_cols=70 Identities=29% Similarity=0.532 Sum_probs=57.1
Q ss_pred eecCCeEEEEEEeecCCCCceEEEeCCcccccCCceEE--ec--ceEEEeccCCCCCeEEEEEEEcCCCCceeEEEEEE
Q psy14542 234 VKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQR--IG--SSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQY 308 (371)
Q Consensus 234 ~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~--~~--~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v 308 (371)
+..|+.+.|.|.+.+ |.+.+.|++||..+..+.++.. .+ .+|.|.++..+|+|.|+|.|.| ...++.|.|
T Consensus 18 ~~~g~~v~l~C~v~~-p~~~v~W~k~g~~i~~~~~~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a~n----~~~~~~ltV 91 (91)
T 2lvc_A 18 AITSECVMLACEVDR-EDAPVRWYKDGQEVEESDFVVLENEGPHRRLVLPATQPSDGGEFQCVAGD----ECAYFTVTI 91 (91)
T ss_dssp CCTTCCEEEEEECSC-TTSCCEEEETTSCCCCCSSCEEEEETTEEEEEESSCCGGGCSEEEEECSS----CEEEEEEEC
T ss_pred EECCCcEEEEEEECC-CCcEEEEEECCEEeeeeeeeeEEecCCeEEEEeCCCChhhcEEEEEEEcc----eEEEEEEEC
Confidence 568999999999865 8889999999999988877663 22 3699999999999999999855 455555543
No 484
>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=4.1e-13 Score=92.00 Aligned_cols=85 Identities=22% Similarity=0.393 Sum_probs=67.6
Q ss_pred cccceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccCCceEEecceEEEeccCCCCCeEEEEEEEcCCCC
Q psy14542 220 LSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQ 299 (371)
Q Consensus 220 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~ 299 (371)
.+|.+...+.... +..|+.+.|.|.+.+.|.+.+.|++++..+.... +..|.|.++..+|+|.|+|.|.|..+.
T Consensus 9 ~~~~i~~~p~~~~-v~~G~~v~l~C~~~g~p~~~v~W~k~~~~~~~~~-----~~~L~i~~v~~~d~G~Y~C~a~n~~~~ 82 (96)
T 2ens_A 9 EEVQLVVEPEGGA-VAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPP-----SPVLILPEIGPQDQGTYSCVATHSSHG 82 (96)
T ss_dssp CSCCCEEESTTSE-ECTTCEEEEECCCSSCSSCCCCCEESSSBCSSCC-----CSEEEEESCCTTTCEEEECEECCSSCC
T ss_pred CCCEEEECCCCCE-EcCCCeEEEEEEEccCCCCEEEEEECCEECcCCC-----CCEEEECCCCcccCEEEEEEEEeCCCC
Confidence 3455555555555 8999999999999999999999999998876543 568999999999999999999997655
Q ss_pred c--eeEEEEEEec
Q psy14542 300 D--KMQLFIQYAH 310 (371)
Q Consensus 300 ~--~~~~~l~v~~ 310 (371)
. +..+.|.|.+
T Consensus 83 ~~~s~~~~v~V~~ 95 (96)
T 2ens_A 83 PQESRAVSISIIE 95 (96)
T ss_dssp CEECCCEEEEECC
T ss_pred cEEEEEEEEEEeC
Confidence 3 4455565543
No 485
>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.41 E-value=7e-13 Score=92.12 Aligned_cols=88 Identities=16% Similarity=0.116 Sum_probs=71.0
Q ss_pred ccceeeeeeeeeeeecCCeEEEEEEeecCCC-CceEEEeCCcccccCCceEEe--c--ceEEEeccCCCCCeEEEEEEEc
Q psy14542 221 SAAKMFEKHRILNVKKDESVILPCSAQGNPL-PTIKWYKQDSPVEESDRIQRI--G--SSLSISHVEESDSGVWNCVANN 295 (371)
Q Consensus 221 ~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~-~~v~W~~~~~~~~~~~~~~~~--~--~~l~i~~~~~~d~G~Y~C~a~n 295 (371)
++.+...+.... +.+|+.+.|.|.+.+.|. +.+.|+++|..+..+.++... + .+|.|.++..+|+|.|+|.|.
T Consensus 8 p~~~~~~~~~~~-v~~G~~v~l~C~v~~~~~~~~v~W~k~g~~i~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~- 85 (104)
T 2eny_A 8 HVGITKRLKTME-VLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRKYILVVREAAPSDAGEVVFSVR- 85 (104)
T ss_dssp CCCCSBCCCCEE-EESSCCEEEEEECSSCCCSSCBCCBSSSSBCSBCSSCEEEEETTEEEEEECSCCTTTCSCEEEEET-
T ss_pred CCEEEecCCCcE-EcCCCcEEEEEEEcCCCCCceeEEEECCEECCCCCCEEEEEcCCEEEEEECCCCHHHCEEEEEEEC-
Confidence 445555555666 999999999999998775 479999999999887776632 2 379999999999999999984
Q ss_pred CCCCceeEEEEEEecCcc
Q psy14542 296 SEGQDKMQLFIQYAHGKY 313 (371)
Q Consensus 296 ~~g~~~~~~~l~v~~~p~ 313 (371)
....++.|.|.++|.
T Consensus 86 ---~~~~~a~L~V~~~p~ 100 (104)
T 2eny_A 86 ---GLTSKASLIVRERSG 100 (104)
T ss_dssp ---TEEEEECEEEECCCS
T ss_pred ---CeeEEEEEEEeCCCc
Confidence 456788899988776
No 486
>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain, integrin, allosteric mobility, cell adhesi immune system; HET: NAG; 2.10A {Homo sapiens}
Probab=99.41 E-value=8.7e-12 Score=95.82 Aligned_cols=154 Identities=10% Similarity=0.040 Sum_probs=97.6
Q ss_pred eeeecCCcEEEEEEecCCCCCceEEEeeCCEEeeeCCeeEEEEcccCcCCCeeEEEEEeCCceeEeccceEEEEEeecCC
Q psy14542 106 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESD 185 (371)
Q Consensus 106 ~~~~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~l~i~~~~~~d 185 (371)
..+.+|+++.|.|.+....+ ..+.|.-.-...... .+. ....+.|.+++ +|
T Consensus 12 ~~V~~G~Sv~l~Cs~~c~~p-~~~~~~t~l~~~~~~-----------------------~g~----~~~~~~ls~vs-~d 62 (196)
T 3bn3_B 12 AFVERGGSLWLNCSTNCPRP-ERGGLETSLRRNGTQ-----------------------RGL----RWLARQLVDIR-EP 62 (196)
T ss_dssp EEEETTEEEEEEEEECCSSC-SEEEEECSSEEEEEE-----------------------EET----TEEEEEEEEEC-SS
T ss_pred cEEcCCCeEEEEEeCCCCCC-CccEEEEccCCeeEc-----------------------ccc----CceEEEEEEEc-cC
Confidence 34589999999999965333 467775321110000 000 01347899998 77
Q ss_pred ccceeEEEeeccccceeeeeeccceeeeecchhcccccee-eeeeeeeeeecCCeEEEEEEeec-CCCCc--eEEEeCCc
Q psy14542 186 RYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKM-FEKHRILNVKKDESVILPCSAQG-NPLPT--IKWYKQDS 261 (371)
Q Consensus 186 ~~g~y~C~~~~~~~~~~~~~~~~~~l~v~~~~~~~~p~~~-~~~~~~~~~~~g~~~~l~C~~~~-~p~~~--v~W~~~~~ 261 (371)
.+.|.|.+... .......+ .|.|. .+|... +.+.... +.+|+.++|+|.+.+ .|..+ |+|++++.
T Consensus 63 -~~~~~C~~~c~-~~~~~~~v---~l~Vy-----~~P~~v~i~~~~~~-~~~G~~~tL~C~v~~~~P~~~L~i~wlkg~~ 131 (196)
T 3bn3_B 63 -ETQPVCFFRCA-RRTLQARG---LIRTF-----QRPDRVELMPLPPW-QPVGENFTLSCRVPGAGPRASLTLTLLRGAQ 131 (196)
T ss_dssp -EECCEEEEEET-TEEEEEEC---EEEEE-----BCCCCCEECCCCSS-EETTSEEEEEEEETTCBCGGGEEEEEEETTE
T ss_pred -CCceEEEEECC-CCceEEEE---EEEEe-----cCCCcCEEccCCcc-ccCCCcEEEEEEeCCccCCCCcEEEEEeCCE
Confidence 78899998765 44444444 77777 333332 2222223 889999999999987 45544 79999998
Q ss_pred ccccCCce------EEecceEEEeccCCCCCeEEEEEEEcCCCC
Q psy14542 262 PVEESDRI------QRIGSSLSISHVEESDSGVWNCVANNSEGQ 299 (371)
Q Consensus 262 ~~~~~~~~------~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~ 299 (371)
.+...... ......+.+.....+|...|+|+|.|..+.
T Consensus 132 ~l~~~~~~~~~~~~~~~t~~~~~~~~r~D~g~~~sC~A~l~l~~ 175 (196)
T 3bn3_B 132 ELIRRSFAGEPPRARGAVLTATVLARREDHGANFSCRAELDLRP 175 (196)
T ss_dssp EEEEEECTTSCTTCCCEEEEEEEECCGGGTTCEEEEEEEEECGG
T ss_pred EeeccccccccccccceeEEEEEeeeeccCCCeEEEEEEccCCc
Confidence 76432200 001145677766676777999999998774
No 487
>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.40 E-value=7.9e-13 Score=92.07 Aligned_cols=87 Identities=21% Similarity=0.401 Sum_probs=68.7
Q ss_pred ccceeeeeee---eeeeecCCeEEEEEEeecCCCCceEEEeCCcccccCCceEEe--c--ceEEEeccCCCCCeEEEEEE
Q psy14542 221 SAAKMFEKHR---ILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI--G--SSLSISHVEESDSGVWNCVA 293 (371)
Q Consensus 221 ~p~~~~~~~~---~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~--~--~~l~i~~~~~~d~G~Y~C~a 293 (371)
+|.+...+.. .. +..|+.+.|.|.+.+.|.+ +.|++++..+....++... + ..|.|.++..+|+|.|+|.|
T Consensus 7 ~P~~~~~p~~~~~~~-v~~G~~v~l~C~~~~~p~~-v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a 84 (104)
T 2e6p_A 7 GPVHILSPQDKVSLT-FTTSERVVLTCELSRVDFP-ATWYKDGQKVEESELLVVKMDGRKHRLILPEAKVQDSGEFECRT 84 (104)
T ss_dssp SSCCCCBCCSCEEEE-EESSSCEECCEECSSTTCC-CEEEETTEECCCBTTBEEEEETTEEEEEESSCCTTTCEEEEEEC
T ss_pred CCCEEECCCCCccEE-EeCCCcEEEEEEecCCCCc-cEEeeCCEECCCCCCEEEEeCCCEEEEEECCCChhhCEEEEEEE
Confidence 4444444444 44 8999999999999999988 9999999988877666532 2 36999999999999999999
Q ss_pred EcCCCCceeEEEEEEecCcc
Q psy14542 294 NNSEGQDKMQLFIQYAHGKY 313 (371)
Q Consensus 294 ~n~~g~~~~~~~l~v~~~p~ 313 (371)
.|..+ .+.|.|.++|.
T Consensus 85 ~n~~~----~~~l~V~~~P~ 100 (104)
T 2e6p_A 85 EGVSA----FFGVTVQDPSG 100 (104)
T ss_dssp SSCCC----CEEEEEECCCC
T ss_pred CCceE----EEEEEEcCCCC
Confidence 98743 56777777665
No 488
>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=3.3e-13 Score=94.65 Aligned_cols=84 Identities=19% Similarity=0.273 Sum_probs=67.4
Q ss_pred cceEEEeCCCcEEEeccCcEEEEEEecCC--CCCCeeEEEeCCE-----------EEeeC-------CeeEEEEccCCcC
Q psy14542 10 SLSIEMSPSGQVVVDVGHRIELHCRVSPK--RLSSAKAWLKDGL-----------VLRRN-------SDEVLVLDRVQRE 69 (371)
Q Consensus 10 ~~~~~~~p~~~~~~~~G~~v~l~C~~~~~--~~~~~~~W~~~~~-----------~~~~~-------~~~~l~i~~~~~~ 69 (371)
.+.+...|.. +.+.+|++++|.|.+... .|.+.|.|||+.. .+... ...+|.|.+++.+
T Consensus 12 ~~~f~~~P~~-v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~ 90 (118)
T 2edn_A 12 TGVFLKKPDS-VSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASNVYTVELHIGKVVLG 90 (118)
T ss_dssp SSSCSBCCCC-CEEETTSCEECCEEEETTTSSSCCCCEEEETTTCCCCCSTTSSCEEEEEECSSSCEEEEEEEESSCCTT
T ss_pred cceEEECCCC-eEEeCCCCEEEEEEEeccCCCCCCcEEEeeCCEeccCCCCccEEEeccccccccccceEEEEEeeCChh
Confidence 3445666766 899999999999977543 4789999999741 11110 2588999999999
Q ss_pred CCeEEEEEEEcCCCCeEEEEEEEEe
Q psy14542 70 DAGMYQCHVSADDDSAQMSAQVILG 94 (371)
Q Consensus 70 d~G~Y~C~~~~~~~~~~~~~~l~v~ 94 (371)
|+|.|+|.+.+..+..+..+.|.|.
T Consensus 91 D~G~Y~Cevsn~~g~~s~~~~L~V~ 115 (118)
T 2edn_A 91 DRGYYRLEVKAKDTCDSCGFNIDVE 115 (118)
T ss_dssp TCSCEEEEEECSSCEEEEEECCEEE
T ss_pred hCEEEEEEEEEcCCcEEEEEEEEEE
Confidence 9999999999999998999999987
No 489
>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=2.8e-13 Score=92.86 Aligned_cols=84 Identities=24% Similarity=0.499 Sum_probs=69.1
Q ss_pred ccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeCCeeEEEEccCCcCCCeEEEEEEEcCCCCe--E
Q psy14542 9 SSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHVSADDDSA--Q 86 (371)
Q Consensus 9 ~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~--~ 86 (371)
.++.+...|.. ..+.+|+.++|.|. ..+.|.+.+.|+|++..+.......|.|.+++.+|+|.|+|.+.|..+.. .
T Consensus 9 ~~~~i~~~p~~-~~v~~G~~v~l~C~-~~g~p~~~v~W~k~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~s 86 (96)
T 2ens_A 9 EEVQLVVEPEG-GAVAPGGTVTLTCE-VPAQPSPQIHWMKDGVPLPLPPSPVLILPEIGPQDQGTYSCVATHSSHGPQES 86 (96)
T ss_dssp CSCCCEEESTT-SEECTTCEEEEECC-CSSCSSCCCCCEESSSBCSSCCCSEEEEESCCTTTCEEEECEECCSSCCCEEC
T ss_pred CCCEEEECCCC-CEEcCCCeEEEEEE-EccCCCCEEEEEECCEECcCCCCCEEEECCCCcccCEEEEEEEEeCCCCcEEE
Confidence 46788888887 78999999999995 45677889999999988876677899999999999999999999965543 3
Q ss_pred EEEEEEEe
Q psy14542 87 MSAQVILG 94 (371)
Q Consensus 87 ~~~~l~v~ 94 (371)
..+.|.|.
T Consensus 87 ~~~~v~V~ 94 (96)
T 2ens_A 87 RAVSISII 94 (96)
T ss_dssp CCEEEEEC
T ss_pred EEEEEEEe
Confidence 44556554
No 490
>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X
Probab=99.39 E-value=7.5e-13 Score=95.15 Aligned_cols=92 Identities=23% Similarity=0.334 Sum_probs=69.8
Q ss_pred eEEEeCCCcEEEeccCcEEEEEEecC-CCCCCeeEEEeCCEEEee-----------------CCeeEEEEccCCcCCCeE
Q psy14542 12 SIEMSPSGQVVVDVGHRIELHCRVSP-KRLSSAKAWLKDGLVLRR-----------------NSDEVLVLDRVQREDAGM 73 (371)
Q Consensus 12 ~~~~~p~~~~~~~~G~~v~l~C~~~~-~~~~~~~~W~~~~~~~~~-----------------~~~~~l~i~~~~~~d~G~ 73 (371)
.+.+.|...+.+.+|++++|.|.+.. ..+.+.+.|++++..+.. ....+|.|.+++.+|+|.
T Consensus 9 ~v~i~p~~~v~v~~G~~v~L~C~~~g~p~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~ 88 (122)
T 3s35_X 9 DVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGL 88 (122)
T ss_dssp EEEEESCSCEEEEETCCEEEEEEEEECTTCCCEEEEECSCTTCCHHHHBCCSCCEEEETTEEEEEEEEEESSCCGGGCEE
T ss_pred EEEEcCCCCEEEecCCeEEEEEEEEcCCCCcEEEEEECCCcccCCceeeeeccccccCCceeeEEEEEEECCCCcccCEE
Confidence 46777777568999999999996543 245578999998763211 034579999999999999
Q ss_pred EEEEEEcCCCCeEEEEEEEEecceeeEecCC
Q psy14542 74 YQCHVSADDDSAQMSAQVILGGELVEIASSN 104 (371)
Q Consensus 74 Y~C~~~~~~~~~~~~~~l~v~~~~~~~~~~~ 104 (371)
|+|.+.|..|.....+.|.|. .+|.+...+
T Consensus 89 Y~C~a~n~~g~~~~~~~l~V~-~~p~i~~~p 118 (122)
T 3s35_X 89 YTCAASSGLMTKKNSTFVRVH-EKPFVAFGS 118 (122)
T ss_dssp EEEEEECSSCEEEEEEEEEEE-EEECC----
T ss_pred EEEEEccCCCceEEEEEEEEe-ccCeEEeec
Confidence 999999999988899999998 666655443
No 491
>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=4e-13 Score=93.01 Aligned_cols=87 Identities=15% Similarity=0.184 Sum_probs=67.5
Q ss_pred cccceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccCC----ceEE--ec--ceEEEeccCCCCCeEEEE
Q psy14542 220 LSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESD----RIQR--IG--SSLSISHVEESDSGVWNC 291 (371)
Q Consensus 220 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~----~~~~--~~--~~l~i~~~~~~d~G~Y~C 291 (371)
.+|.+...+.... +..|+.+.|.|.+.+.| +.+.|++++..+.... ++.. .+ ..|.|.++..+|+|.|+|
T Consensus 7 ~p~~~~~~~~~~~-v~~G~~v~l~C~~~~~~-~~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C 84 (101)
T 2edk_A 7 GPVLIVTPLEDQQ-VFVGDRVEMAVEVSEEG-AQVMWMKNGVELTREDSFKARYRFKKDGKRHILIFSDVVQEDRGRYQV 84 (101)
T ss_dssp CCCCEEECCCCEE-EESSCCCBCCEEESCSS-CCCEEEESSCBCCCSCCSSCCCEEEECSSEEEEECSSCCGGGCSBEEE
T ss_pred CCCEEEecCCceE-EcCCCCEEEEEEEeCCC-CEEEEEECCEECCCCCCcceeEEEEECCCEEEEEECCCChhhCEEEEE
Confidence 3455665555666 99999999999999888 9999999999887765 3342 22 369999999999999999
Q ss_pred EEEcCCCCceeEEEEEEecCc
Q psy14542 292 VANNSEGQDKMQLFIQYAHGK 312 (371)
Q Consensus 292 ~a~n~~g~~~~~~~l~v~~~p 312 (371)
.|.| ...++.|.|.++|
T Consensus 85 ~a~n----~~~~~~l~V~~~P 101 (101)
T 2edk_A 85 ITNG----GQCEAELIVEEKQ 101 (101)
T ss_dssp ECSS----CEECCBEEEECCC
T ss_pred EEcC----CcEEEEEEEeCCC
Confidence 9987 3445567776654
No 492
>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens}
Probab=99.39 E-value=3.2e-12 Score=87.28 Aligned_cols=82 Identities=16% Similarity=0.328 Sum_probs=66.0
Q ss_pred cceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccCCceEEe--c--ceEEEeccCCCCCeEEEEEEEcCC
Q psy14542 222 AAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI--G--SSLSISHVEESDSGVWNCVANNSE 297 (371)
Q Consensus 222 p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~--~--~~l~i~~~~~~d~G~Y~C~a~n~~ 297 (371)
+.+...+.... +..|+.+.|.|.+ +.|.+.+.|++++..+..+.++... + ..|.|.++..+|+|.|+|.|
T Consensus 9 ~~~~~~~~~~~-v~~G~~v~l~C~~-~~p~~~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a---- 82 (95)
T 2k1m_A 9 SAFSKKPRSVE-VAAGSPAVFEAET-ERAGVKVRWQRGGSDISASNKYGLATEGTRHTLTVREVGPADQGSYAVIA---- 82 (95)
T ss_dssp CCCSBCCCCEE-EETTSCEEEEEEC-SSSSCCCEEECSSSEECSSTTCEEEEETTEEEEEESSCCTTCCSEEEEEE----
T ss_pred CeeEeCCCcEE-EeCCCcEEEEEEe-CCCCCeEEEEECCEECCCCCcEEEEEcCCEEEEEEcCCCcccCEEEEEEE----
Confidence 44444455555 9999999999999 7888999999999988877666532 2 36999999999999999999
Q ss_pred CCceeEEEEEEe
Q psy14542 298 GQDKMQLFIQYA 309 (371)
Q Consensus 298 g~~~~~~~l~v~ 309 (371)
|....++.|.|.
T Consensus 83 g~~~~~~~l~V~ 94 (95)
T 2k1m_A 83 GSSKVKFDLKVI 94 (95)
T ss_dssp TTEEEEEEEEEE
T ss_pred CCceEEEEEEEe
Confidence 666777777775
No 493
>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A
Probab=99.39 E-value=1.5e-12 Score=90.44 Aligned_cols=88 Identities=15% Similarity=0.226 Sum_probs=71.7
Q ss_pred cccceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccCCceEEe-cc---eEEEeccCCCCCeEEEEEEEc
Q psy14542 220 LSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI-GS---SLSISHVEESDSGVWNCVANN 295 (371)
Q Consensus 220 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~-~~---~l~i~~~~~~d~G~Y~C~a~n 295 (371)
.+|.+...+.... +..|+.+.|.|.+.+.|.+ +.|++++..+..+.++... ++ .|.|.++..+|+|.|+|.
T Consensus 7 ~pp~~~~~~~~~~-v~~G~~v~l~C~~~~~p~~-v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~--- 81 (103)
T 2e7b_A 7 GPVRFQEALKDLE-VLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQEGAMLELVVRNLRPQDSGRYSCS--- 81 (103)
T ss_dssp CCCCCTBCCCCEE-EESSSCEEEEEECSSCCCS-CEEEESSSBCCCSSSEEEEECSSEEEEEECSCCTTTCCCEEEE---
T ss_pred CCCEEEecCccEE-EECCCcEEEEEEEeCCCCC-eEEEECCEECCCCCcEEEEEcCCEEEEEEccCCcccCEEEEEE---
Confidence 4556655556666 9999999999999999888 9999999998877766632 23 599999999999999998
Q ss_pred CCCCceeEEEEEEecCcc
Q psy14542 296 SEGQDKMQLFIQYAHGKY 313 (371)
Q Consensus 296 ~~g~~~~~~~l~v~~~p~ 313 (371)
.|.....+.|.|..+|.
T Consensus 82 -~g~~~~~~~l~V~~~p~ 98 (103)
T 2e7b_A 82 -FGDQTTSATLTVTALPS 98 (103)
T ss_dssp -CSSCBCCBCEEEECCCC
T ss_pred -ECCcEEEEEEEEEeccc
Confidence 56677778888888776
No 494
>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.39 E-value=9e-13 Score=92.10 Aligned_cols=86 Identities=22% Similarity=0.361 Sum_probs=68.3
Q ss_pred cccceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccCCceEEe--c--ceEEEeccCCCCCeEEEEEEEc
Q psy14542 220 LSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI--G--SSLSISHVEESDSGVWNCVANN 295 (371)
Q Consensus 220 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~--~--~~l~i~~~~~~d~G~Y~C~a~n 295 (371)
.+|.+...+.... +..|+.+.|.|.+.+.|.+ +.|++++..+....++... + ..|.|.++..+|+|.|+|.|.|
T Consensus 7 ~~p~~~~~~~~~~-v~~G~~v~l~C~~~~~~~~-v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n 84 (106)
T 2dlt_A 7 GQLEVLQDIADLT-VKAAEQAVFKCEVSDEKVT-GKWYKNGVEVRPSKRITISHVGRFHKLVIDDVRPEDEGDYTFVPDG 84 (106)
T ss_dssp CCCCEEECCCCEE-EESSCCEECCCEESCSSCE-EEEEESSCBCCCCSSCEEEEETTEEEEEESSCCTTTCSCEEEEEET
T ss_pred CCCEEecCCCCeE-EeCCCeEEEEEEEcCCCcc-eEEEcCCEECcCCCCEEEEEeCCEEEEEECCCCcCCCEEEEEEEcc
Confidence 4566666666666 9999999999999988877 9999999998877776632 2 3799999999999999999999
Q ss_pred CCCCceeEEEEEEe
Q psy14542 296 SEGQDKMQLFIQYA 309 (371)
Q Consensus 296 ~~g~~~~~~~l~v~ 309 (371)
. .....+.|.|.
T Consensus 85 ~--~~~~~~~l~V~ 96 (106)
T 2dlt_A 85 Y--ALSLSAKLNFL 96 (106)
T ss_dssp S--CCCCCBCEEEE
T ss_pred C--CceEEEEEEEE
Confidence 8 33344445554
No 495
>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A
Probab=99.38 E-value=7.4e-13 Score=91.51 Aligned_cols=83 Identities=17% Similarity=0.310 Sum_probs=66.3
Q ss_pred cceEEEeC---CCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC----------CeeEEEEccCCcCCCeEEEE
Q psy14542 10 SLSIEMSP---SGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN----------SDEVLVLDRVQREDAGMYQC 76 (371)
Q Consensus 10 ~~~~~~~p---~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~----------~~~~l~i~~~~~~d~G~Y~C 76 (371)
+|.+...| ...+.+.+|+++.|.|.+ .+.|.+.+.|++++..+... ...+|.|.+++.+|+|.|+|
T Consensus 4 ~P~~~~~~~~~~~~~~v~~G~~v~l~C~~-~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C 82 (100)
T 3caf_A 4 APYWTNTEKMEKRLHAVPAANTVKFRCPA-GGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTC 82 (100)
T ss_dssp EEEESCTTTTSCCEEEECTTCCEEEECCE-EEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEE
T ss_pred CCEeEcCccccccEEEecCCCEEEEEEEc-cccCCCEEEEEECCEEcccccccccEEEecCeEEEEEccCCcCCCEEEEE
Confidence 34454444 223778999999999954 56788899999999887653 23489999999999999999
Q ss_pred EEEcCCCCeEEEEEEEE
Q psy14542 77 HVSADDDSAQMSAQVIL 93 (371)
Q Consensus 77 ~~~~~~~~~~~~~~l~v 93 (371)
.+.|..|.....+.|.|
T Consensus 83 ~a~N~~g~~~~~~~l~V 99 (100)
T 3caf_A 83 VVENEYGSINHTYHLDV 99 (100)
T ss_dssp EEEETTEEEEEEEEEEE
T ss_pred EEEeCCCEEEEEEEEEE
Confidence 99999888887777776
No 496
>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.38 E-value=4.6e-12 Score=87.97 Aligned_cols=88 Identities=20% Similarity=0.315 Sum_probs=72.5
Q ss_pred cccceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccCCceEEe-cc---eEEEeccCCCCCeEEEEEEEc
Q psy14542 220 LSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI-GS---SLSISHVEESDSGVWNCVANN 295 (371)
Q Consensus 220 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~-~~---~l~i~~~~~~d~G~Y~C~a~n 295 (371)
.+|.+...+.... +..|+.+.|.|.+ +.|.+.+.|++++..+..+.++... ++ .|.|.++..+|+|.|+|.
T Consensus 7 ~pp~~~~~~~~~~-v~~G~~v~l~C~~-~~p~~~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~--- 81 (103)
T 2dku_A 7 GANCFTEELTNLQ-VEEKGTAVFTCKT-EHPAATVTWRKGLLELRASGKHQPSQEGLTLRLTISALEKADSDTYTCD--- 81 (103)
T ss_dssp CCCCCSSCCCCEE-EETTSEEEEEEEC-SSCCSCCEEEESSCBCCSSSSEEEEEETTEEEEEEESCCTTTCSEEEEE---
T ss_pred CCCEeEecCCcEE-EeCCCcEEEEEEe-CCCCCeEEEEeCCEECCCCCeEEEEeCCCEEEEEECCCCcccCEEEEEE---
Confidence 3556666666666 9999999999994 7888999999999999887777643 33 799999999999999998
Q ss_pred CCCCceeEEEEEEecCcc
Q psy14542 296 SEGQDKMQLFIQYAHGKY 313 (371)
Q Consensus 296 ~~g~~~~~~~l~v~~~p~ 313 (371)
.|.....+.|.|..+|.
T Consensus 82 -~g~~~~~~~l~V~~~p~ 98 (103)
T 2dku_A 82 -IGQAQSRAQLLVQGRRS 98 (103)
T ss_dssp -CSSCBCCEEEEEECSCC
T ss_pred -eCCceEEEEEEEeCccC
Confidence 67777788898887766
No 497
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=2.6e-13 Score=95.68 Aligned_cols=84 Identities=20% Similarity=0.434 Sum_probs=71.1
Q ss_pred ccceEEEeCCCcEEEeccCcEEEEEEecCCCCCCeeEEEeCCEEEeeC----------CeeEEEEccCCcCCCeEEEEEE
Q psy14542 9 SSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN----------SDEVLVLDRVQREDAGMYQCHV 78 (371)
Q Consensus 9 ~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~~~~~~~~W~~~~~~~~~~----------~~~~l~i~~~~~~d~G~Y~C~~ 78 (371)
.+|.+...|.. ..+.+|+.++|.|.+ .+.|.+.+.|++++..+... ...+|.|.+++.+|+|.|+|.+
T Consensus 8 ~~P~i~~~~~~-~~v~~G~~v~l~C~~-~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a 85 (110)
T 2dm3_A 8 FRPHFLQAPGD-LTVQEGKLCRMDCKV-SGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRDAGIYTCIA 85 (110)
T ss_dssp CCCEEEECCCE-EEEESSSCBCCEEEE-ECSSCCEEECBBSSSBCCCCSSEEEEECTTSCEEEEESSCCGGGCSBBCEEE
T ss_pred CCCcEEeCCCc-EEEeCCCEEEEEEEE-EEcCCCEEEEEECCEECCCCCceEEEEecCCeEEEEEeeCCcccCEEEEEEE
Confidence 36778887877 899999999999965 46788899999988766543 2358999999999999999999
Q ss_pred EcCCCCeEEEEEEEEe
Q psy14542 79 SADDDSAQMSAQVILG 94 (371)
Q Consensus 79 ~~~~~~~~~~~~l~v~ 94 (371)
.|..|.....+.|.|.
T Consensus 86 ~n~~g~~~~~~~l~V~ 101 (110)
T 2dm3_A 86 TNRAGQNSFSLELVVA 101 (110)
T ss_dssp ECSSCEEEECCEEEEE
T ss_pred ECCCCEEEEEEEEEEe
Confidence 9999888888888887
No 498
>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus}
Probab=99.38 E-value=2.1e-12 Score=91.25 Aligned_cols=88 Identities=20% Similarity=0.325 Sum_probs=68.8
Q ss_pred EEecccceEEEeCCCcEEEeccCcEEEEEEecCC-CCCCeeEEEeCCEEEeeC----------C-------eeEEEEccC
Q psy14542 5 IQVKSSLSIEMSPSGQVVVDVGHRIELHCRVSPK-RLSSAKAWLKDGLVLRRN----------S-------DEVLVLDRV 66 (371)
Q Consensus 5 ~~v~~~~~~~~~p~~~~~~~~G~~v~l~C~~~~~-~~~~~~~W~~~~~~~~~~----------~-------~~~l~i~~~ 66 (371)
....++|.+...|.. ..+.+|++++|.|.+... .+.+.+.|+|++..+... . ..+|.|.++
T Consensus 5 c~~~~~P~i~~~p~~-~~v~~G~~v~L~C~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v 83 (112)
T 3so5_A 5 CDDFPXPQITVQPET-QSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGELMEYTTILRLRNV 83 (112)
T ss_dssp ---CCSCEEEECCCC-EEECTTCCEEEEEEEEESCCCCCEEEEEETTEECTTCEEEEEEETTGGGSSCEEEEEEEEECSC
T ss_pred cCCCCCCeEEeCCCC-cEEECCCCEEEEEEEecCCCCCEEEEEccCCcccccccccceeeeeccCCCccccceEEEEecc
Confidence 344678889998888 899999999999976533 456789999999876542 1 478999999
Q ss_pred CcCCCeEEEEEEEcCCCC-eEEEEEEEE
Q psy14542 67 QREDAGMYQCHVSADDDS-AQMSAQVIL 93 (371)
Q Consensus 67 ~~~d~G~Y~C~~~~~~~~-~~~~~~l~v 93 (371)
+.+|+|.|+|.+.|..|. .+..+.|.|
T Consensus 84 ~~~D~G~Y~C~a~n~~g~~~s~~~~l~V 111 (112)
T 3so5_A 84 EFTSEGXYQCVISNHFGSSYSVXAXLTI 111 (112)
T ss_dssp CGGGCEEEEEEEEETTEEEECCCEEEEE
T ss_pred ccccCCeEEEEEEeCCCcEEEeEEEEEe
Confidence 999999999999998776 345566655
No 499
>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.37 E-value=1.1e-11 Score=86.39 Aligned_cols=88 Identities=11% Similarity=0.112 Sum_probs=71.6
Q ss_pred cccceeeeeeeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccccCC----------ceEEec----ceEEEeccCCCC
Q psy14542 220 LSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESD----------RIQRIG----SSLSISHVEESD 285 (371)
Q Consensus 220 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~----------~~~~~~----~~l~i~~~~~~d 285 (371)
.+|.+...+.+.. +.+|+.+.|.|.+.+ .+.+.|++||..+..+. ++.... .+|.|.++..+|
T Consensus 7 p~~~~~~~l~d~~-v~eG~~a~f~C~vs~--~p~v~W~knG~~l~~~~~~~~~~~~~~r~~i~~~g~~~~L~I~~v~~~D 83 (112)
T 2e6q_A 7 GTARLVAGLEDVQ-VYDGEDAVFSLDLST--IIQGTWFLNGEELKSNEPEGQVEPGALRYRIEQKGLQHRLILHAVKHQD 83 (112)
T ss_dssp SCCCEEECCCCEE-EETTCEEEEEEEESS--CCCCEEEESSCBCCSSCCCTTSCTTSCEEEECCBTTEEEEEEESCCSTT
T ss_pred CCcEEecCCCCeE-EcCCCcEEEEEEECC--CCeEEEEECCEECccCcccccccccccEEEEEeCCcEEEEEECCCCHHH
Confidence 3466776777777 999999999999987 77899999999998887 766432 279999999999
Q ss_pred CeEEEEEEEcCCCCceeEEEEEEecCcc
Q psy14542 286 SGVWNCVANNSEGQDKMQLFIQYAHGKY 313 (371)
Q Consensus 286 ~G~Y~C~a~n~~g~~~~~~~l~v~~~p~ 313 (371)
+|.|+|...+ ....++.|.|..+|.
T Consensus 84 ~G~Y~~~~~~---~~~ssA~L~V~~~p~ 108 (112)
T 2e6q_A 84 SGALVGFSCP---GVQDSAALTIQESSG 108 (112)
T ss_dssp CSEEEEEEET---TEEEEEEEEEECSSC
T ss_pred CccEEEEEEC---CeeEEEEEEEeCCCc
Confidence 9999875443 445688999998876
No 500
>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens}
Probab=99.37 E-value=4e-12 Score=91.49 Aligned_cols=83 Identities=14% Similarity=0.305 Sum_probs=66.6
Q ss_pred eeeeeeecCCeEEEEEEeecCCCCceEEEeCCcccc--------cCCceEEe-----cceEEEeccCCCCCeEEEEEEEc
Q psy14542 229 HRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVE--------ESDRIQRI-----GSSLSISHVEESDSGVWNCVANN 295 (371)
Q Consensus 229 ~~~~~~~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~--------~~~~~~~~-----~~~l~i~~~~~~d~G~Y~C~a~n 295 (371)
.... +.+|++++|.|.+.+.|.+.+.|++++..+. ...++... ..+|.|.+++.+|+|.|+|.+.|
T Consensus 9 ~~~~-v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n 87 (124)
T 3rbg_A 9 ETIT-VEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQLSITVPNVTLQDEGVYKCLHYS 87 (124)
T ss_dssp EEEE-EETTSCEEEEEECCCCTTCEEEEECTTSCEEEETTEECSCSSCCEEEEEETTEEEEEESSCCGGGCEEEEEEEES
T ss_pred ccEE-EcCCCCEEEEeEEeccCCCEEEEECCCCeEEEEeccccccCCcEEEEeCCCCEEEEEECCCChHHCEEEEEEEEc
Confidence 3344 8999999999999999999999998665421 33444432 35899999999999999999999
Q ss_pred CCCCceeEEEEEEecCcc
Q psy14542 296 SEGQDKMQLFIQYAHGKY 313 (371)
Q Consensus 296 ~~g~~~~~~~l~v~~~p~ 313 (371)
. |.....+.|.|..+|.
T Consensus 88 ~-g~~~~~~~l~V~~~P~ 104 (124)
T 3rbg_A 88 D-SVSTKEVKVIVLATMK 104 (124)
T ss_dssp S-SEEEEEEEEEEECC--
T ss_pred C-CCCcEEEEEEEEeCCC
Confidence 9 9899999999998887
Done!