RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14542
(371 letters)
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion,
membrane, development protein; HET: NAG; 1.95A
{Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Length = 388
Score = 170 bits (433), Expect = 9e-50
Identities = 81/384 (21%), Positives = 126/384 (32%), Gaps = 74/384 (19%)
Query: 12 SIEMSPSGQVVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRNSDEVLVL----- 63
P+ ++ E+ C+ S P + W++ + + +
Sbjct: 5 VFLKEPTNRIDFSNSTGAEIECKASGNPMPEII----WIRSDGTAVGDVPGLRQISSDGK 60
Query: 64 ---------DRVQREDAGMYQCHVSADDDSAQM-SAQVILGGELVEIASSNQVVVDVGHR 113
D Q A +Y C S V A N+ V G+
Sbjct: 61 LVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNS 120
Query: 114 IELHCRV--SPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHML 171
+ C + +W D E DGKY +L
Sbjct: 121 AVIKCLIPSFVADFVEVVSWHTDEEENYFPGAE-------------------YDGKYLVL 161
Query: 172 SSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRI 231
SGEL I +V D Y+SYQCR ++LTG + LS +GRL +TE + +
Sbjct: 162 PSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKP 221
Query: 232 LNVKKDESVILPCSAQGNPLPTIKWYKQDS------PVEESDRIQRIGSSLSISHVEESD 285
L + ++ L C AQG P P+ +WYK V +DR++++ +L I D
Sbjct: 222 LELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVED 281
Query: 286 SGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRI 345
SG + CV NNS G + L + +
Sbjct: 282 SGKYLCVVNNSVGGES---------------VETVLTVT----------APLSAKIDPPT 316
Query: 346 LNVKKDESVILPCSAQGNPLPTIK 369
V + C GNP+ T+
Sbjct: 317 QTVDFGRPAVFTCQYTGNPIKTVS 340
Score = 116 bits (293), Expect = 9e-30
Identities = 56/313 (17%), Positives = 81/313 (25%), Gaps = 69/313 (22%)
Query: 21 VVVDVGHRIELHCRV--SPKRLSSAKAWLKDGLVLRRNSDE-----------VLVLDRVQ 67
V G+ + C + +W D E L + V
Sbjct: 113 EHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVG 172
Query: 68 REDA-GMYQCHV----------SADDDSAQMSAQVILGGELVEIASSNQVVVDVGHRIEL 116
ED YQC SA ++ + + + V H I L
Sbjct: 173 PEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISL 232
Query: 117 HCRVS--PK-RLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSS 173
C P W K R VL S
Sbjct: 233 LCPAQGFPAPSFR----WYKFIEGTTRKQAVVL-------------------NDRVKQVS 269
Query: 174 GELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILN 233
G LII D + Y C N + G S L++T
Sbjct: 270 GTLIIKDAVVEDSGK-YLCVVNNSVGGES----VETVLTVTA------PLSAKIDPPTQT 318
Query: 234 VKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVA 293
V + C GNP+ T+ W K + S+ L I V++ D G++ C
Sbjct: 319 VDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSES------VLRIESVKKEDKGMYQCFV 372
Query: 294 NNSEG--QDKMQL 304
N + +L
Sbjct: 373 RNDRESAEASAEL 385
Score = 68.8 bits (168), Expect = 4e-13
Identities = 34/93 (36%), Positives = 53/93 (56%), Gaps = 9/93 (9%)
Query: 5 IQVKSSLSIEMSPSGQVVVDVGHRIELHCRVS---PKRLSSAKAWLKDGLVLRRNSDEVL 61
+ V + LS ++ P Q V D G C+ + K +S W+KDG + +S+ VL
Sbjct: 302 LTVTAPLSAKIDPPTQTV-DFGRPAVFTCQYTGNPIKTVS----WMKDGKAIG-HSESVL 355
Query: 62 VLDRVQREDAGMYQCHVSADDDSAQMSAQVILG 94
++ V++ED GMYQC V D +SA+ SA++ LG
Sbjct: 356 RIESVKKEDKGMYQCFVRNDRESAEASAELKLG 388
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30,
N-terminal eight IG domains...; immunoglobulin domain;
HET: NAG NDG; 4.19A {Drosophila melanogaster}
Length = 816
Score = 173 bits (441), Expect = 2e-48
Identities = 78/386 (20%), Positives = 124/386 (32%), Gaps = 77/386 (19%)
Query: 12 SIEMSPSGQVVVDVGHRIELHCRV--SPK-RLSSAKAWLKDGLVLRRNSD---------- 58
P+ ++ E+ C+ +P + W++ +
Sbjct: 40 VFLKEPTNRIDFSNSTGAEIECKASGNPMPEII----WIRSDGTAVGDVPGLRQISSDGK 95
Query: 59 ----EVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGELVEIASSNQ-VVVDVGHR 113
D Q A +Y C S + + V G+
Sbjct: 96 LVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNS 155
Query: 114 IELHCRVSPKRLSSAKA---WLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHM 170
+ C + P ++ W D E DGKY +
Sbjct: 156 AVIKCLI-PSFVADFVEVVSWHTDEEENYFPGAE-------------------YDGKYLV 195
Query: 171 LSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMF-EKH 229
L SGEL I +V D Y+SYQCR ++LTG + LS +GRL +TE + K
Sbjct: 196 LPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKVVSLAKF 255
Query: 230 RILNVKKDESVILPCSAQGNPLPTIKWYK------QDSPVEESDRIQRIGSSLSISHVEE 283
+ ++ L C AQG P+P +WYK + V +DR++++ +L I
Sbjct: 256 DMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVV 315
Query: 284 SDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKH 343
DSG + CV NNS G + L + +
Sbjct: 316 EDSGKYLCVVNNSVGGES---------------VETVLTVT----------APLSAKIDP 350
Query: 344 RILNVKKDESVILPCSAQGNPLPTIK 369
V + C GNP+ T+
Sbjct: 351 PTQTVDFGRPAVFTCQYTGNPIKTVS 376
Score = 159 bits (403), Expect = 3e-43
Identities = 82/371 (22%), Positives = 141/371 (38%), Gaps = 68/371 (18%)
Query: 5 IQVKSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLD 64
+ V + LS ++ P Q V D G C+ + + + W+KDG + +S+ VL ++
Sbjct: 338 LTVTAPLSAKIDPPTQTV-DFGRPAVFTCQYTGNPIKTVS-WMKDGKAIG-HSESVLRIE 394
Query: 65 RVQREDAGMYQCHVSADDDSAQMSAQVILGGEL----VEIASSNQVVVDVGHRIELHCRV 120
V++ED GMYQC V D +SA+ SA++ LGG + A + + G + L C
Sbjct: 395 SVKKEDKGMYQCFVRNDRESAEASAELKLGGRFDPPVIRQAFQEETME-PGPSVFLKCVA 453
Query: 121 --SPK-RLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELI 177
+P +S W DG + N+D V V L
Sbjct: 454 GGNPTPEIS----WELDGKKIA-NNDRYQVGQYVTVNGDV---------------VSYLN 493
Query: 178 IHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKD 237
I V +D Y+C +K+ A + +L++ + +
Sbjct: 494 ITSVHANDGGL-YKCIAKSKVGVAE----HSAKLNVYG-------LPYIRQMEKKAIVAG 541
Query: 238 ESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGS-SLSISHVE-ESDSGVWNCVANN 295
E++I+ C G P+ +I W + + + + + + + +L I +VE SD + CVA N
Sbjct: 542 ETLIVTCPVAGYPIDSIVWERDNRALPINRKQKVFPNGTLIIENVERNSDQATYTCVAKN 601
Query: 296 SEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKDESVI 355
EG S E+ + + + + +
Sbjct: 602 QEGYSARG--------------SLEVQVMVLPRIIPFAFEE---------GPAQVGQYLT 638
Query: 356 LPCSAQGNPLP 366
L CS G LP
Sbjct: 639 LHCSVPGGDLP 649
Score = 157 bits (399), Expect = 9e-43
Identities = 66/377 (17%), Positives = 122/377 (32%), Gaps = 87/377 (23%)
Query: 13 IEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDE-----------VL 61
+ ++ + L C + + W K R L
Sbjct: 250 VSLAKFDMKTYSGSSTMALLCPAQGYPVPVFR-WYKFIEGTTRKQAVVLNDRVKQVSGTL 308
Query: 62 VLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGELVEIASSNQVVVDVGHRIELHCRVS 121
++ ED+G Y C V+ + + + L VD G C+ +
Sbjct: 309 IIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYT 368
Query: 122 PKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQV 181
+ + W+KDG + +S+ VL ++ V++ED GMYQC + + + +S EL +
Sbjct: 369 GNPIKTVS-WMKDGKAIG-HSESVLRIESVKKEDKGMYQCFVRNDRESAEASAELKL--- 423
Query: 182 DESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVI 241
+ + + ++ SV
Sbjct: 424 -----------------------------------GGRFDPPVIRQAFQEETMEPGPSVF 448
Query: 242 LPCSAQGNPLPTIKWYKQDSPVEESDRIQ---------RIGSSLSISHVEESDSGVWNCV 292
L C A GNP P I W + +DR Q + S L+I+ V +D G++ C+
Sbjct: 449 LKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCI 508
Query: 293 ANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKDE 352
A + G + S +L ++ + + E
Sbjct: 509 AKSKVGVAE---------------HSAKLNVY-----------GLPYIRQMEKKAIVAGE 542
Query: 353 SVILPCSAQGNPLPTIK 369
++I+ C G P+ +I
Sbjct: 543 TLIVTCPVAGYPIDSIV 559
Score = 137 bits (347), Expect = 8e-36
Identities = 69/386 (17%), Positives = 119/386 (30%), Gaps = 97/386 (25%)
Query: 12 SIEMSPSGQVVVDVGHRIELHCRV--SPK-RLSSAKAWLKDGLVLRRNS----------- 57
I + + + G + L C +P +S W DG + N
Sbjct: 431 VIRQAFQEETME-PGPSVFLKCVAGGNPTPEIS----WELDGKKIANNDRYQVGQYVTVN 485
Query: 58 ---DEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGELVE----IASSNQVVVDV 110
L + V D G+Y+C + A+ SA++ V I + +
Sbjct: 486 GDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLN-----VYGLPYIRQMEKKAIVA 540
Query: 111 GHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHM 170
G + + C V+ + S W +D L N K +
Sbjct: 541 GETLIVTCPVAGYPIDSIV-WERDNRALPINR------------------------KQKV 575
Query: 171 LSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEK-H 229
+G LII V+ + +Y C N+ ++ RG L + ++ ++
Sbjct: 576 FPNGTLIIENVERNSDQATYTCVAKNQEGYSA-----RGSLEVQ----VMVLPRIIPFAF 626
Query: 230 RILNVKKDESVILPCSAQGNPLP-TIKWYKQDSPVEESDRIQRI-----GSSLSISHVEE 283
+ + + L CS G LP I W + E I GS L+I VE
Sbjct: 627 EEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEA 686
Query: 284 SDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKH 343
S +G + C A N G + + L ++ + +
Sbjct: 687 SHAGNFTCHARNLAGHQQ---------------FTTPLNVY----------VPPRWILEP 721
Query: 344 RILNVKKDESVILPCSAQGNPLPTIK 369
+ + C A G P P +
Sbjct: 722 TDKAFAQGSDAKVECKADGFPKPQVT 747
Score = 136 bits (345), Expect = 1e-35
Identities = 61/333 (18%), Positives = 112/333 (33%), Gaps = 61/333 (18%)
Query: 5 IQVKSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNS------D 58
+ V I + G + + C V+ + S W +D L N +
Sbjct: 522 LNVYGLPYIRQMEK--KAIVAGETLIVTCPVAGYPIDSIV-WERDNRALPINRKQKVFPN 578
Query: 59 EVLVLDRVQR-EDAGMYQCHVS-ADDDSAQMSAQVILGGELVEIASSNQ-VVVDVGHRIE 115
L+++ V+R D Y C + SA+ S +V + I + + VG +
Sbjct: 579 GTLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLT 638
Query: 116 LHCRVS----PKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHML 171
LHC V P + W DG + ED G+ +
Sbjct: 639 LHCSVPGGDLPLNID----WTLDGQAIS--------------EDLGITTSRVGR------ 674
Query: 172 SSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRI 231
L I V+ S + C N G + L++ + +
Sbjct: 675 RGSVLTIEAVEASHAGN-FTCHARNLA-GHQQFTT---PLNVYV------PPRWILEPTD 723
Query: 232 LNVKKDESVILPCSAQGNPLPTIKWYK-------QDSPVEESDRIQRIGSSLSISHVEES 284
+ + C A G P P + W K + +++SD I+ +L + +++++
Sbjct: 724 KAFAQGSDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVEEGTLHVDNIQKT 783
Query: 285 DSGVWNCVANNSEGQDK---MQLFIQYAHGKYH 314
+ G + C A N G + + +Q H +H
Sbjct: 784 NEGYYLCEAINGIGSGLSAVIMISVQAHHHHHH 816
Score = 133 bits (336), Expect = 2e-34
Identities = 67/392 (17%), Positives = 109/392 (27%), Gaps = 87/392 (22%)
Query: 4 FIQVKSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKA---WLKDGLVLRRNSDEV 60
++ + E + + V G+ + C + P ++ W D E
Sbjct: 132 HVRAVVAQYYEADVN-KEHVIRGNSAVIKCLI-PSFVADFVEVVSWHTDEEENYFPGAEY 189
Query: 61 -----------LVLDRVQREDA-GMYQCHVS---ADDDSAQMSAQVILGGE--------L 97
L + V ED YQC + + ++ E +
Sbjct: 190 DGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKV 249
Query: 98 VEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAG 157
V +A + + L C + + W K R VL
Sbjct: 250 VSLAKFDMKTYSGSSTMALLCPAQGYPVPVFR-WYKFIEGTTRKQAVVL----------- 297
Query: 158 MYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENK 217
SG LII D + Y C N + G S L++T
Sbjct: 298 --------NDRVKQVSGTLIIKDAVVEDSGK-YLCVVNNSVGGES----VETVLTVTA-- 342
Query: 218 RLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLS 277
V + C GNP+ T+ W K + S+ L
Sbjct: 343 ----PLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSES------VLR 392
Query: 278 ISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAA 337
I V++ D G++ C N + +S EL +
Sbjct: 393 IESVKKEDKGMYQCFVRNDRESAE---------------ASAELKL-------GGRFDPP 430
Query: 338 KMFEKHRILNVKKDESVILPCSAQGNPLPTIK 369
+ + + ++ SV L C A GNP P I
Sbjct: 431 VIRQAFQEETMEPGPSVFLKCVAGGNPTPEIS 462
Score = 110 bits (275), Expect = 2e-26
Identities = 41/332 (12%), Positives = 88/332 (26%), Gaps = 74/332 (22%)
Query: 61 LVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGEL---VEIASSNQVVVDVGHRIELH 117
+ + + + ++ S ++A + +N++ E+
Sbjct: 1 MNMPNERLKWLMLFAAVALIACGSQTLAANPPDADQKGPVFLKEPTNRIDFSNSTGAEIE 60
Query: 118 CRV--SPK-RLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSG 174
C+ +P + W++ D V D G + S G
Sbjct: 61 CKASGNPMPEII----WIRS--------DGTAVGD--------------VPGLRQISSDG 94
Query: 175 ELIIHQVDESDRYR-----SYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKH 229
+L+ D + Y C N+ G + + A+ +E
Sbjct: 95 KLVFPPFRAEDYRQEVHAQVYACLARNQF----------GSIISRDVHVRAVVAQYYEAD 144
Query: 230 -RILNVKKDESVILPC---SAQGNPLPTIKWYKQDSPV-----EESDRI-QRIGSSLSIS 279
+V + S ++ C S + + + W+ + E + L I
Sbjct: 145 VNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIR 204
Query: 280 HVEESDS-GVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAK 338
V D + C + + V +
Sbjct: 205 EVGPEDGYKSYQCRTKHRLTGET---------------RLSATKGRLVITEPISSAVPKV 249
Query: 339 MF-EKHRILNVKKDESVILPCSAQGNPLPTIK 369
+ K + ++ L C AQG P+P +
Sbjct: 250 VSLAKFDMKTYSGSSTMALLCPAQGYPVPVFR 281
Score = 81.9 bits (202), Expect = 5e-17
Identities = 35/189 (18%), Positives = 59/189 (31%), Gaps = 37/189 (19%)
Query: 2 QLFIQVKSSLSIEMSPSGQVVVDVGHRIELHCRVS----PKRLSSAKAWLKDGLVLRRN- 56
L +QV I + VG + LHC V P + W DG + +
Sbjct: 610 SLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNID----WTLDGQAISEDL 665
Query: 57 ---------SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGELVEIASSNQVV 107
VL ++ V+ AG + CH Q + + + I
Sbjct: 666 GITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVYVPPRWILEPTDKA 725
Query: 108 VDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRN------------SDEVLVLDRVQ 152
G ++ C+ PK +++ W K + L +D +Q
Sbjct: 726 FAQGSDAKVECKADGFPKPQVT----WKKAVGDTPGEYKDLKKSDNIRVEEGTLHVDNIQ 781
Query: 153 REDAGMYQC 161
+ + G Y C
Sbjct: 782 KTNEGYYLC 790
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A
{Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
b.1.1.4
Length = 395
Score = 167 bits (423), Expect = 3e-48
Identities = 66/377 (17%), Positives = 115/377 (30%), Gaps = 63/377 (16%)
Query: 13 IEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEV--------LVLD 64
++ P+ +V+ + L C + +W KDG LV
Sbjct: 9 LKDQPA-EVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLVFL 67
Query: 65 RVQREDAGMYQCHVSADDDSAQ-MSAQVILGGELVEIASSNQVVVDVGHRIELHCRVSPK 123
R Q D G YQC A + A +++ G +L C +
Sbjct: 68 RPQASDEGHYQCFAETPAGVASSRVISFRKTYLIASPAKTHEKTPIEGRPFQLDCVLPNA 127
Query: 124 RLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDE 183
W K N+D D + G L V +
Sbjct: 128 YPKPLITWKKRLSGADPNADVT-----------------DFDRRITAGPDGNLYFTIVTK 170
Query: 184 SDR--YRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKH-RILNVKKDESV 240
D Y C N ++ V +T++ + + + + K +
Sbjct: 171 EDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVT 230
Query: 241 ILPCSAQGNPLPTIKWYKQDSPVEES--DRIQRI----GSSLSISHVEESDSGVWNCVAN 294
++ C NP+ ++K V + DRI R G L D GV+ C +
Sbjct: 231 MIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVD 290
Query: 295 NSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKH--RILNVKKDE 352
N G+ + S +L + +A +E+ +++ VK+ +
Sbjct: 291 NGVGKPQKH--------------SLKLTVV-----------SAPKYEQKPEKVIVVKQGQ 325
Query: 353 SVILPCSAQGNPLPTIK 369
V +PC G P P +
Sbjct: 326 DVTIPCKVTGLPAPNVV 342
Score = 122 bits (308), Expect = 8e-32
Identities = 52/328 (15%), Positives = 97/328 (29%), Gaps = 68/328 (20%)
Query: 5 IQVKSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEV---- 60
+ ++ + G +L C + W K N+D
Sbjct: 95 FRKTYLIASPAKTH-EKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDR 153
Query: 61 ---------LVLDRVQREDA---GMYQCHVS-----ADDDSAQMSAQVILGGEL------ 97
L V +ED Y C + + + +
Sbjct: 154 RITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEP 213
Query: 98 VEIASSNQVVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRNSDEVLVLDRVQRE 154
V S ++ G ++C P + + K+G + N ++ +
Sbjct: 214 VPQYVSKDMMAKAGDVTMIYCMYGSNPMGYPN----YFKNGKDVNGNPEDRI-------- 261
Query: 155 DAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLT 214
+++ S L+ D Y C N + S+ +L++
Sbjct: 262 -----------TRHNRTSGKRLLFKTTLPEDE-GVYTCEVDNGVGKPQKHSL---KLTVV 306
Query: 215 ENKRLLSAAKMFEKH--RILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI 272
+A +E+ +++ VK+ + V +PC G P P + W P+ R
Sbjct: 307 -------SAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPL-SGGRATVT 358
Query: 273 GSSLSISHVEESDSGVWNCVANNSEGQD 300
S L I V+ D G + C A N G
Sbjct: 359 DSGLVIKGVKNGDKGYYGCRATNEHGDK 386
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor
protein tyrosine phosphatase; HET: NAG; 2.00A {Mus
musculus} PDB: 3jxa_A*
Length = 384
Score = 163 bits (415), Expect = 4e-47
Identities = 75/381 (19%), Positives = 137/381 (35%), Gaps = 82/381 (21%)
Query: 12 SIEMSPSGQVVVDV--GHRIELHCRV--SPK-RLSSAKAWLKDGLVLRRNSDEVLVL--- 63
PS + +++L C V +PK + W +G + D +
Sbjct: 7 VFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIR----WKLNGTDVDIGMDFRYSVVDG 62
Query: 64 -----DRVQREDAGMYQCHVS-----ADDDSAQMSAQVILGGELVEIASSNQVVVDVGHR 113
+ + +DAG YQC + A++ + E + + + V V G
Sbjct: 63 SLLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYL---ENFKTRTRSTVSVRRGQG 119
Query: 114 IELHCRVSPKRLSSAKA---WLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHM 170
+ L C P S + W+ + ++ + ++
Sbjct: 120 MVLLCGPPP---HSGELSYAWIFNEYPSYQD-----------------------NRRFVS 153
Query: 171 LSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKH- 229
+G L I +V++SD +Y C N +T +L + + K+ +
Sbjct: 154 QETGNLYIAKVEKSDV-GNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFP 212
Query: 230 RILNVKKDESVILPCSAQGNPLPTIKWYKQD-SPVEESDRIQRIGSSLSISHVEESDSGV 288
+ +K +V L C A GNP+PTI W + D P+ R + L I + ++ D+G
Sbjct: 213 ETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNGILEIPNFQQEDAGS 272
Query: 289 WNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNV 348
+ CVA NS G++ + G+L + + + ++V
Sbjct: 273 YECVAENSRGKNV---------------AKGQLTFY----------AQPNWVQIINDIHV 307
Query: 349 KKDESVILPCSAQGNPLPTIK 369
+ESV C A G P PT +
Sbjct: 308 AMEESVFWECKANGRPKPTYR 328
Score = 134 bits (338), Expect = 5e-36
Identities = 69/335 (20%), Positives = 121/335 (36%), Gaps = 80/335 (23%)
Query: 5 IQVKSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKA---WLKDGLVLRRNSDEV- 60
+Q + + V V G + L C P S + W+ + +++
Sbjct: 96 LQFAYLENFKTRTRSTVSVRRGQGMVLLCGPPP---HSGELSYAWIFNEYPSYQDNRRFV 152
Query: 61 ------LVLDRVQREDAGMYQCHVS---ADDDSAQMSAQVILGGEL--------VEIASS 103
L + +V++ D G Y C V+ + +IL + +E+
Sbjct: 153 SQETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFP 212
Query: 104 NQVVVDVGHRIELHCRVS--PK-RLSSAKAWLK-DGLVL-----RRNSDEVLVLDRVQRE 154
V + G ++L C P + W + DG + R S+ +L + Q+E
Sbjct: 213 ETVPAEKGTTVKLECFALGNPVPTIL----WRRADGKPIARKARRHKSNGILEIPNFQQE 268
Query: 155 DAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLT 214
DAG Y+C E+ + ++ G+L +
Sbjct: 269 DAGSYECVAENSRGKNVAKGQLTFY----------------------------------- 293
Query: 215 ENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGS 274
+ + ++V +ESV C A G P PT +W K P+ DRIQ
Sbjct: 294 ------AQPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIEQG 347
Query: 275 SLSISHVEESDSGVWNCVANNSEG--QDKMQLFIQ 307
+L+I+ V SD+G++ CVA N G +L +
Sbjct: 348 TLNITIVNLSDAGMYQCVAENKHGVIFSSAELSVI 382
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus
gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB:
2om5_A
Length = 382
Score = 159 bits (404), Expect = 1e-45
Identities = 68/375 (18%), Positives = 120/375 (32%), Gaps = 72/375 (19%)
Query: 13 IEMSPSGQVVV--DVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDE--------VLV 62
E P+ + ++ L CR ++ + W +G L+ D +++
Sbjct: 7 FEEQPAHTLFPEGSAEEKVTLTCRARANPPATYR-WKMNGTELKMGPDSRYRLVAGDLVI 65
Query: 63 LDRVQREDAGMYQCHVS-----ADDDSAQMSAQVILGGELVEIASSNQVVVDVGHRIELH 117
+ V+ +DAG YQC + A + + + + V + G +
Sbjct: 66 SNPVKAKDAGSYQCVATNARGTVVSREASLRFGFL---QEFSAEERDPVKITEGWGVMFT 122
Query: 118 CRVSPKRLSSAK-AWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGEL 176
C P + WL + +D ++ ++G L
Sbjct: 123 CSP-PPHYPALSYRWLLNEFPNFIPAD---------------------GRRFVSQTTGNL 160
Query: 177 IIHQVDESDRYRSYQCRGVNKLTGA-SLLSVNRGRLSLTENKRLLSAAKMFEKHRI-LNV 234
I + + SD +Y C + + + +LSL A + K
Sbjct: 161 YIAKTEASDL-GNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYA 219
Query: 235 KKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVAN 294
+ V L C A GNP+P IKW K D + + L I +V+ D G + C A
Sbjct: 220 LTGQMVTLECFAFGNPVPQIKWRKLDGSQ--TSKWLSSEPLLHIQNVDFEDEGTYECEAE 277
Query: 295 NSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKDESV 354
N +G+D G +IIH + + +
Sbjct: 278 NIKGRDT---------------YQGRIIIH----------AQPDWLDVITDTEADIGSDL 312
Query: 355 ILPCSAQGNPLPTIK 369
C A G P P ++
Sbjct: 313 RWSCVASGKPRPAVR 327
Score = 136 bits (345), Expect = 4e-37
Identities = 52/333 (15%), Positives = 92/333 (27%), Gaps = 76/333 (22%)
Query: 5 IQVKSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAK-AWLKDGLVLRRNSDE---- 59
++ V + G + C P + WL + +D
Sbjct: 95 LRFGFLQEFSAEERDPVKITEGWGVMFTCSP-PPHYPALSYRWLLNEFPNFIPADGRRFV 153
Query: 60 -----VLVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGELV------------EIAS 102
L + + + D G Y C ++ D S + +
Sbjct: 154 SQTTGNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKF 213
Query: 103 SNQVVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVL---RRNSDEVLVLDRVQREDA 156
G + L C P ++ W K +S+ +L + V ED
Sbjct: 214 PADTYALTGQMVTLECFAFGNPVPQIK----WRKLDGSQTSKWLSSEPLLHIQNVDFEDE 269
Query: 157 GMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTEN 216
G Y+C E + +Q + +
Sbjct: 270 GTYECEAE-------NIKGRDTYQGR---------------------III---------- 291
Query: 217 KRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSL 276
+ + + C A G P P ++W + P+ +RI+ G L
Sbjct: 292 ---HAQPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGGEL 348
Query: 277 SISHVEESDSGVWNCVANNSEGQD--KMQLFIQ 307
S + DSG++ CVA N G +L +Q
Sbjct: 349 RFSKLVLEDSGMYQCVAENKHGTVYASAELTVQ 381
Score = 72.6 bits (178), Expect = 2e-14
Identities = 28/139 (20%), Positives = 52/139 (37%), Gaps = 27/139 (19%)
Query: 237 DESVILPCSAQGNPLPTIKWYKQDSPVE--ESDRIQRIGSSLSISH-VEESDSGVWNCVA 293
+E V L C A+ NP T +W + ++ R + + L IS+ V+ D+G + CVA
Sbjct: 22 EEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDLVISNPVKAKDAGSYQCVA 81
Query: 294 NNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKDES 353
N+ G + L + E + E+ + + +
Sbjct: 82 TNARGTVVSR--------------EASLRFGFLQEFSA---------EERDPVKITEGWG 118
Query: 354 VILPCSA-QGNPLPTIKYR 371
V+ CS P + ++
Sbjct: 119 VMFTCSPPPHYPALSYRWL 137
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin
superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus
norvegicus}
Length = 403
Score = 158 bits (402), Expect = 4e-45
Identities = 78/386 (20%), Positives = 134/386 (34%), Gaps = 71/386 (18%)
Query: 2 QLFIQVKSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEV- 60
+ SL PS V G + L+C R W KDGL+L D+
Sbjct: 13 HHHHGGRRSLHFVSEPS-DAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILALGMDDRK 71
Query: 61 ------------LVLDRVQREDAGMYQCHVSADDDSAQMS--AQVILGGELVEIASSNQV 106
++ R + D G+YQC S D + +S A+V++ G L ++ + +
Sbjct: 72 QQLPNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGPLRFLSQTESI 131
Query: 107 VVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDG 166
+G + L C V + + W K+ L D
Sbjct: 132 TAFMGDTVLLKCEVIGDPMPTIH-WQKNQQDLNPIPG---------------------DS 169
Query: 167 KYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMF 226
+ +L SG L I ++ D Y+C N AS + N + + + L
Sbjct: 170 RVVVLPSGALQISRLQPGDS-GVYRCSARNP---ASTRTGNEAEVRILSDPGLHRQLYFL 225
Query: 227 EKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI--GSSLSISHVEES 284
++ + + + +L C G P P+ W + + ++ + + GS+L IS+V +
Sbjct: 226 QRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGSNLLISNVTDD 285
Query: 285 DSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKH- 343
DSG + CV +S EL + F H
Sbjct: 286 DSGTYTCVVTYKNENIS---------------ASAELTVL-----------VPPWFLNHP 319
Query: 344 RILNVKKDESVILPCSAQGNPLPTIK 369
L + + C+ G P+PT+
Sbjct: 320 SNLYAYESMDIEFECAVSGKPVPTVN 345
Score = 137 bits (347), Expect = 3e-37
Identities = 66/327 (20%), Positives = 111/327 (33%), Gaps = 64/327 (19%)
Query: 3 LFIQVKSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDE--- 59
+ + + + +G + L C V + + W K+ L +
Sbjct: 116 VMVAGPLRFLSQTES---ITAFMGDTVLLKCEVIGDPMPTIH-WQKNQQDLNPIPGDSRV 171
Query: 60 ------VLVLDRVQREDAGMYQCHVS---ADDDSAQMSAQVI----LGGELVEIASSNQV 106
L + R+Q D+G+Y+C + + +++ L +L + + V
Sbjct: 172 VVLPSGALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNV 231
Query: 107 VVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHI 163
+ G L C VS P + WL+ V++ +
Sbjct: 232 IAIEGKDAVLECCVSGYPPPSFT----WLRGEEVIQ-----------------------L 264
Query: 164 EDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAA 223
KY +L L+I V + D +Y C K S L++ L
Sbjct: 265 RSKKYSLLGGSNLLISNVTDDDS-GTYTCVVTYKNENIS----ASAELTV------LVPP 313
Query: 224 KMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI-GSSLSISHVE 282
L + + C+ G P+PT+ W K V SD Q + GS+L I V
Sbjct: 314 WFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIVGGSNLRILGVV 373
Query: 283 ESDSGVWNCVANNSEGQD--KMQLFIQ 307
+SD G + CVA N G QL +
Sbjct: 374 KSDEGFYQCVAENEAGNAQSSAQLIVP 400
Score = 110 bits (277), Expect = 2e-27
Identities = 54/296 (18%), Positives = 97/296 (32%), Gaps = 60/296 (20%)
Query: 84 SAQMSAQVILGGELVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSD 143
S+ L ++ + V G + L+C R W KDGL+L D
Sbjct: 9 SSHHHHHHGGRRSLHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILALGMD 68
Query: 144 EVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRS----YQCRGVNKLT 199
+ + L +G L+I + S ++ YQC
Sbjct: 69 D----------------------RKQQLPNGSLLIQNILHSRHHKPDEGLYQC------- 99
Query: 200 GASLLSVNRGRLSLTENKRLLSAAK-MFEKH-RILNVKKDESVILPCSAQGNPLPTIKWY 257
S+ ++ +++ A F + ++V+L C G+P+PTI W
Sbjct: 100 ---EASLGDSGSIISRTAKVMVAGPLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQ 156
Query: 258 KQDSPVEESDRIQRI----GSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKY 313
K + R+ +L IS ++ DSGV+ C A N
Sbjct: 157 KNQQDLNPIPGDSRVVVLPSGALQISRLQPGDSGVYRCSARNPASTRTG----------- 205
Query: 314 HMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIK 369
+ E+ I +++L + + + + +L C G P P+
Sbjct: 206 ---NEAEVRILSDPGLHRQLYFLQRPSN----VIAIEGKDAVLECCVSGYPPPSFT 254
Score = 74.9 bits (184), Expect = 4e-15
Identities = 28/149 (18%), Positives = 56/149 (37%), Gaps = 36/149 (24%)
Query: 234 VKKDESVILPCSAQGN-PLPTIKWYKQDSPVEESDRIQRI---GSSLSISHVEES----- 284
+ +V+L CSA+ + +P IKW K + ++ SL I ++ S
Sbjct: 33 TMRGGNVLLNCSAESDRGVPVIKWKKDGLILALGMDDRKQQLPNGSLLIQNILHSRHHKP 92
Query: 285 DSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAK-MFEKH 343
D G++ C A+ + + + +++ A F
Sbjct: 93 DEGLYQCEASLGDSGSII-------------------------SRTAKVMVAGPLRFLSQ 127
Query: 344 -RILNVKKDESVILPCSAQGNPLPTIKYR 371
+ ++V+L C G+P+PTI ++
Sbjct: 128 TESITAFMGDTVLLKCEVIGDPMPTIHWQ 156
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL
structural protein; 3.30A {Oryctolagus cuniculus}
Length = 570
Score = 161 bits (408), Expect = 9e-45
Identities = 72/381 (18%), Positives = 126/381 (33%), Gaps = 86/381 (22%)
Query: 12 SIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKA---WLKDGLVLRRNSDE--------- 59
V +G I L C+V + + W K+ LR
Sbjct: 7 YFIEPLE-HVEAAIGEPITLQCKVD----GTPEIRIAWYKEHTKLRSAPAYKMQFKNNVA 61
Query: 60 VLVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGELV--EIASSNQ-VVVDVGHRIEL 116
LV+++V D G Y C + SA +++ + A + V +G +
Sbjct: 62 SLVINKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFARKLKDVHETLGFPVAF 121
Query: 117 HCRVS---PKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSS 173
CR++ P ++S W KDG +L+ +++ +
Sbjct: 122 ECRINGSEPLQVS----WYKDGELLKDDANLQTSFI---------------------HNV 156
Query: 174 GELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILN 233
L I Q D+S Y C N L AS +L+L+E++ K ++
Sbjct: 157 ATLQILQTDQSHV-GQYNCSASNPLGTASS----SAKLTLSEHE---VPPFFDLKPVSVD 208
Query: 234 VKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI----GSSLSISHVEESDSGVW 289
+ ES C G I W K + + + ++L++ V + D+G +
Sbjct: 209 LALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQY 268
Query: 290 NCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEK-HRILNV 348
C A+N G+D S +L + + +K V
Sbjct: 269 TCYASNVAGKDS---------------CSAQLGVQ----------EPPRFIKKLEPSRIV 303
Query: 349 KKDESVILPCSAQGNPLPTIK 369
K+DE C G+P +
Sbjct: 304 KQDEHTRYECKIGGSPEIKVL 324
Score = 155 bits (393), Expect = 1e-42
Identities = 58/375 (15%), Positives = 114/375 (30%), Gaps = 80/375 (21%)
Query: 12 SIEMSPSGQVVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRNS---------DE 59
++ P + +G C V+ +++ W KD +R
Sbjct: 199 FFDLKPVSVDLA-LGESGTFKCHVTGTAPIKIT----WAKDNREIRPGGNYKMTLVENTA 253
Query: 60 VLVLDRVQREDAGMYQCHVSADDDSAQMSAQV-ILGGELVEIASSNQVVVDVGHRIELHC 118
L + +V + DAG Y C+ S SAQ+ + +V C
Sbjct: 254 TLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYEC 313
Query: 119 RVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELII 178
++ W KD ++ + + + S L +
Sbjct: 314 KIGGSPEIKVL-WYKDETEIQES-------SKFRMSFVE--------------SVAVLEM 351
Query: 179 HQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDE 238
+ + D Y C N G S + + ++ +K + K
Sbjct: 352 YNLSVEDSGD-YTCEAHNAA----------GSASSSTSLKVKEPPVFRKKPHPVETLKGA 400
Query: 239 SVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI----GSSLSISHVEESDSGVWNCVAN 294
V L C QG P + W+K + + + + +S+ I +V+ +D G + C A+
Sbjct: 401 DVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKAS 460
Query: 295 NSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKDESV 354
N G D G + + + + +K ++ E V
Sbjct: 461 NDVGSDT---------------CVGSITLK----------APPRFVKKLSDISTVVGEEV 495
Query: 355 ILPCSAQGNPLPTIK 369
L + +G ++
Sbjct: 496 QLQATIEGAEPISVA 510
Score = 151 bits (383), Expect = 3e-41
Identities = 70/383 (18%), Positives = 126/383 (32%), Gaps = 110/383 (28%)
Query: 21 VVVDVGHRIELHCRVS---PKRLSSAKAWLKDGLVLRRNSDE---------VLVLDRVQR 68
V +G + CR++ P ++S W KDG +L+ +++ L + + +
Sbjct: 111 VHETLGFPVAFECRINGSEPLQVS----WYKDGELLKDDANLQTSFIHNVATLQILQTDQ 166
Query: 69 EDAGMYQCHVSADDDSAQMSAQVILGGELV----EIASSNQVVVDVGHRIELHCRVS--P 122
G Y C S +A SA++ L V ++ + + +G C V+
Sbjct: 167 SHVGQYNCSASNPLGTASSSAKLTLSEHEVPPFFDLKPVSVDLA-LGESGTFKCHVTGTA 225
Query: 123 K-RLSSAKAWLKDGLVLRRNS---------DEVLVLDRVQREDAGMYQCHIEDGKYHMLS 172
+++ W KD +R L + +V + DAG Y C+ +
Sbjct: 226 PIKIT----WAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSC 281
Query: 173 SGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEK-HRI 231
S +L + + +K
Sbjct: 282 SAQLGVQ-----------------------------------------EPPRFIKKLEPS 300
Query: 232 LNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI----GSSLSISHVEESDSG 287
VK+DE C G+P + WYK ++ ++ES + + + L + ++ DSG
Sbjct: 301 RIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSG 360
Query: 288 VWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKH-RIL 346
+ C A+N+ G SS L + +F K +
Sbjct: 361 DYTCEAHNAAGSAS---------------SSTSLKVK-----------EPPVFRKKPHPV 394
Query: 347 NVKKDESVILPCSAQGNPLPTIK 369
K V L C QG P +
Sbjct: 395 ETLKGADVHLECELQGTPPFQVS 417
Score = 135 bits (341), Expect = 2e-35
Identities = 61/325 (18%), Positives = 106/325 (32%), Gaps = 62/325 (19%)
Query: 5 IQVKSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN-------- 56
+ V+ +V C++ W KD ++ +
Sbjct: 285 LGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVL-WYKDETEIQESSKFRMSFV 343
Query: 57 -SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGELVEIASSNQVVVDVGHRIE 115
S VL + + ED+G Y C SA S + + V + V G +
Sbjct: 344 ESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVH 403
Query: 116 LHCRVS--PK-RLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLS 172
L C + P ++S W KD LR KY ++S
Sbjct: 404 LECELQGTPPFQVS----WHKDKRELR------------------------SGKKYKIMS 435
Query: 173 SGE---LIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKH 229
+ I VD +D YQC+ N + G+ + ++L + +K
Sbjct: 436 ENFLTSIHILNVDSADI-GEYQCKASNDV-GSDTCVGS---ITLKA------PPRFVKKL 484
Query: 230 RILNVKKDESVILPCSAQGNPLPTIKWYKQDSPV-EESDRIQRI----GSSLSISHVEES 284
++ E V L + +G ++ W+K + ESD I ++L S E +
Sbjct: 485 SDISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIWISYSENIATLQFSRAEPA 544
Query: 285 DSGVWNCVANNSEGQD--KMQLFIQ 307
++G + C N G L +
Sbjct: 545 NAGKYTCQIKNEAGTQECFATLSVL 569
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo
sapiens} PDB: 3p40_A*
Length = 404
Score = 152 bits (385), Expect = 1e-42
Identities = 66/390 (16%), Positives = 112/390 (28%), Gaps = 80/390 (20%)
Query: 5 IQVKSSLSIEMSPSGQVVVDVGHRIELHCRV--SPK-RLSSAKAWLKDGLVLRRNSDE-- 59
++ +I + +VD I + C +P W ++ D
Sbjct: 11 NELTQPPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFH----WTRNSRFFNIAKDPRV 66
Query: 60 -----------VLVLDRVQREDAGMYQCHVSADDDSA-QMSAQVILGG-ELVEIASSNQV 106
E G YQC +A ++ + L + + V
Sbjct: 67 SMRRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDPV 126
Query: 107 VVDVGHRIELHCRVSPKRLSSAKA---WLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHI 163
VV G + L C P W+ +
Sbjct: 127 VVQEGAPLTLQCNPPP---GLPSPVIFWMSSSMEPI-----------------------T 160
Query: 164 EDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAA 223
+D + +G+L V D Y C T LT
Sbjct: 161 QDKRVSQGHNGDLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTP 220
Query: 224 K---MFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESD-RIQRIGSSLSIS 279
V + ++L C A G P P I WYK+ + + + +L I+
Sbjct: 221 SFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKAKFENFNKALRIT 280
Query: 280 HVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKM 339
+V E DSG + C+A+N G + + + + +A
Sbjct: 281 NVSEEDSGEYFCLASNKMGSIR---------------HTISVRVK----------AAPYW 315
Query: 340 FEKHRILNVKKDESVILPCSAQGNPLPTIK 369
++ + L + E L C A GNP PT++
Sbjct: 316 LDEPKNLILAPGEDGRLVCRANGNPKPTVQ 345
Score = 122 bits (308), Expect = 9e-32
Identities = 56/341 (16%), Positives = 100/341 (29%), Gaps = 86/341 (25%)
Query: 5 IQVKSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKA---WLKDGLVLRRNSDEV- 60
+QV S VVV G + L C P W+ + V
Sbjct: 110 LQVSKSPLWPKENLDPVVVQEGAPLTLQCNPPP---GLPSPVIFWMSSSMEPITQDKRVS 166
Query: 61 ------LVLDRVQREDA-GMYQCHVS-----ADDDSAQMSAQVILGGELVEIA------- 101
L V +D Y C+ + +V+ + E
Sbjct: 167 QGHNGDLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQ 226
Query: 102 -SSNQVVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVL------RRNSDEVLVLDRV 151
+++ +V G + L C S P ++ W K G L N ++ L + V
Sbjct: 227 GTASSQMVLRGMDLLLECIASGVPTPDIA----WYKKGGDLPSDKAKFENFNKALRITNV 282
Query: 152 QREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRL 211
ED+G Y C + + + + +
Sbjct: 283 SEEDSGEYFCLASNKMGSIRHTISVRVK-------------------------------- 310
Query: 212 SLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESD---R 268
+A ++ + L + E L C A GNP PT++W P++ +
Sbjct: 311 ---------AAPYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPN 361
Query: 269 IQRIGSSLSISHVEESDSGVWNCVANNSEGQD--KMQLFIQ 307
+ G ++ + S V+ C +N G + +
Sbjct: 362 REVAGDTIIFRDTQISSRAVYQCNTSNEHGYLLANAFVSVL 402
>2y25_A Myomesin; structural protein, sarcomere, M-BAND,
immunoglobulin-like D; 3.50A {Homo sapiens}
Length = 317
Score = 148 bits (374), Expect = 6e-42
Identities = 49/327 (14%), Positives = 106/327 (32%), Gaps = 52/327 (15%)
Query: 5 IQVKSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLR-------RNS 57
I + S +V + L C+V+ + + W KD + ++
Sbjct: 2 IDPFTGPHFVEYLSWEVTG--ECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDG 59
Query: 58 DEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGELVEIASSNQVVVDVGHRIELH 117
L++ ++DAG+Y+ + D + +++ + + + +++
Sbjct: 60 ICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALSATDLKIQ 119
Query: 118 CRVSPKRLSSAKA---------WLKDGLVLRRNSD---------EVLVLDRVQREDAGMY 159
+L S W +G +R + L ++ D G Y
Sbjct: 120 STAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKY 179
Query: 160 QCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRL 219
+ DGK + +L DE+ RL
Sbjct: 180 VMELFDGKTGHQKTVDLSGQAYDEA--------------------YAEFQRLKQAAIAEK 219
Query: 220 LSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI-----GS 274
A + ++ +++ +++ L C+ G+P P + W K + + D +
Sbjct: 220 NRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTA 279
Query: 275 SLSISHVEESDSGVWNCVANNSEGQDK 301
+I+ V +DSG + V N G +
Sbjct: 280 YFTINGVSTADSGKYGLVVKNKYGSET 306
Score = 111 bits (280), Expect = 2e-28
Identities = 35/276 (12%), Positives = 86/276 (31%), Gaps = 46/276 (16%)
Query: 105 QVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLR-------RNSDEVLVLDRVQREDAG 157
V + L C+V+ + + W KD + ++ L++ ++DAG
Sbjct: 15 SWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAG 74
Query: 158 MYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENK 217
+Y+ ++D + S +L+ E
Sbjct: 75 IYEVILKDDRGKDKSRLKLVDEAFKE-------------------------------LMM 103
Query: 218 RLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGS--- 274
+ + + + + + W S + SDR++ +
Sbjct: 104 EVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQ 163
Query: 275 -SLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRL 333
L I+ +D G + + + + + + L + EKN+
Sbjct: 164 IWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNR-- 221
Query: 334 LSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIK 369
A + ++ +++ +++ L C+ G+P P +
Sbjct: 222 --ARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVS 255
Score = 83.8 bits (207), Expect = 2e-18
Identities = 19/147 (12%), Positives = 45/147 (30%), Gaps = 18/147 (12%)
Query: 226 FEKHRILNVKKDESVILPCSAQG-NPLPTIKWYKQDSPVEESDRIQRI--GSSLSISHVE 282
F ++ V + +V+L C I WYK + + ++ +L I+
Sbjct: 10 FVEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFS 69
Query: 283 ESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEK 342
+ D+G++ + + G+DK S +L+ E + +
Sbjct: 70 KKDAGIYEVILKDDRGKDK---------------SRLKLVDEAFKELMMEVCKKIALSAT 114
Query: 343 HRILNVKKDESVILPCSAQGNPLPTIK 369
+ + + +
Sbjct: 115 DLKIQSTAEGIQLYSFVTYYVEDLKVN 141
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain,
vegfr-2, growth factor receptor, VEGF LI
hormone-signaling protein complex, angiogenesis; 3.20A
{Homo sapiens} PDB: 3v6b_R
Length = 772
Score = 154 bits (390), Expect = 1e-41
Identities = 65/380 (17%), Positives = 121/380 (31%), Gaps = 58/380 (15%)
Query: 4 FIQVKSSLSIEMSPSGQ----VVVDVGHRIELHCRVSPKRLSS-------AKAWLKDGLV 52
++Q S I + + + + C S L+ K ++ DG
Sbjct: 117 YVQDYRSPFIASVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNR 176
Query: 53 LRRNSDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGEL----VEIASSNQVVV 108
+ +S + + AGM C +D+S Q +++ V ++ S+ + +
Sbjct: 177 ISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIEL 236
Query: 109 DVGHRIELHCRVSPKRLSSAK-AWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGK 167
VG ++ L+C + W + L + G
Sbjct: 237 SVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDL-------------KTQSGS 283
Query: 168 YHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFE 227
L I V SD+ Y C + L N + + E + +
Sbjct: 284 EMKKFLSTLTIDGVTRSDQ-GLYTCAASSGLMTKK----NSTFVRVHEKPFVAFGSG--- 335
Query: 228 KHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSG 287
++ E V +P G P P IKWYK P+E + I + G L+I V E D+G
Sbjct: 336 MESLVEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTI-KAGHVLTIMEVSERDTG 394
Query: 288 VWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILN 347
+ + N ++K S + + V + + + +
Sbjct: 395 NYTVILTNPISKEK---------------QSHVVSL-VVYVPPQ----IGEKSLISPVDS 434
Query: 348 VKKDESVILPCSAQGNPLPT 367
+ + L C+ P P
Sbjct: 435 YQYGTTQTLTCTVYAIPPPH 454
Score = 139 bits (351), Expect = 2e-36
Identities = 54/391 (13%), Positives = 115/391 (29%), Gaps = 93/391 (23%)
Query: 12 SIEMSPSGQVVVDVGHRIELHCRVSPK---RLSSAKAWLKDGLVLRRNSDE----VLVLD 64
+ + + + +++ CR + ++ + + + SD L +
Sbjct: 33 RLSIQKD-ILTIKANTTLQITCRGQRDLDWLWPNNQSGSEQRVEVTECSDGLFCKTLTIP 91
Query: 65 RVQREDAGMYQCHVSADDDSAQMSAQVILGGELVEIASSNQ-----VVVDVGHRIELHCR 119
+V D G Y+C D ++ + V + S+Q + + + + C
Sbjct: 92 KVIGNDTGAYKCFYRETDLASVIYVYVQDYRSPFIASVSDQHGVVYITENKNKTVVIPCL 151
Query: 120 VSPKRLSS-------AKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLS 172
S L+ K ++ DG + +S + + AGM C + S
Sbjct: 152 GSISNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQS 211
Query: 173 SGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRIL 232
+++ + +
Sbjct: 212 IMYIVVVVGYR-------------------------------------IYDVVLSPSHGI 234
Query: 233 NVKKDESVILPCSAQGNPLPTIKWYK--------------QDSPVEESDRIQRIGSSLSI 278
+ E ++L C+A+ I + +D + +++ S+L+I
Sbjct: 235 ELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTI 294
Query: 279 SHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAK 338
V SD G++ C A++ K F+ +V EK +
Sbjct: 295 DGVTRSDQGLYTCAASSGLMTKKNSTFV------------------RVHEKPFVAFGS-- 334
Query: 339 MFEKHRILNVKKDESVILPCSAQGNPLPTIK 369
++ E V +P G P P IK
Sbjct: 335 --GMESLVEATVGERVRIPAKYLGYPPPEIK 363
Score = 130 bits (327), Expect = 3e-33
Identities = 60/421 (14%), Positives = 106/421 (25%), Gaps = 93/421 (22%)
Query: 1 MQLFIQVKSSLSIEMSPSGQVVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRNS 57
+ + K ++ V VG R+ + + P + W K+G+ L N
Sbjct: 320 TFVRVHEKPFVAFGSGMESLVEATVGERVRIPAKYLGYPPPEIK----WYKNGIPLESNH 375
Query: 58 ----DEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGE-----LVEIASSNQVVV 108
VL + V D G Y ++ + S V L + S
Sbjct: 376 TIKAGHVLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSY 435
Query: 109 DVGHRIELHCRVS----PKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIE 164
G L C V P + W N V
Sbjct: 436 QYGTTQTLTCTVYAIPPPHHIH----WYWQLEEECANEPSQAVSVTNPYPCEEWRSVEDF 491
Query: 165 DGKYHMLSSGE------------LIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLS 212
G + + + + Y+C VNK+ G +
Sbjct: 492 QGGNKIEVNKNQFALIEGKNKTVSTLVIQAANVSAL-YKCEAVNKV-GRGERVI---SFH 546
Query: 213 LTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQ-- 270
+T + + ESV L C+A + + WYK +
Sbjct: 547 VTRGPE-------ITLQPDMQPTEQESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELP 599
Query: 271 ----------------------RIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQY 308
+ + + D G + C+A + + + +
Sbjct: 600 TPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKR------- 652
Query: 309 AHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTI 368
+ ++ A + ES+ + C+A GNP P I
Sbjct: 653 --------HCVVRQLTVLERV------APTITGNLENQTTSIGESIEVSCTASGNPPPQI 698
Query: 369 K 369
Sbjct: 699 M 699
Score = 126 bits (316), Expect = 8e-32
Identities = 53/352 (15%), Positives = 94/352 (26%), Gaps = 58/352 (16%)
Query: 2 QLFIQVKSSLSIEMSPSGQVVVDVGHRIELHCRVS------------------------- 36
L + V + + S G L C V
Sbjct: 414 SLVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQA 473
Query: 37 -------PKRLSSAKAWLKDGLVLRRNSDE----------VLVLDRVQREDAGMYQCHVS 79
P + + G + N ++ V L + +Y+C
Sbjct: 474 VSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAV 533
Query: 80 --ADDDSAQMSAQVILGGELVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLV 137
+S V EI + + L C + W K G
Sbjct: 534 NKVGRGERVISFHVT---RGPEITLQPDMQPTEQESVSLWCTAD-RSTFENLTWYKLGPQ 589
Query: 138 LRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNK 197
L + D +++ + + + D+ Y C ++
Sbjct: 590 PLPIHVGELPTPVCKNLDT-LWKLNATMFSNSTNDILIMELKNASLQDQ-GDYVCLAQDR 647
Query: 198 LTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWY 257
T + A + ES+ + C+A GNP P I W+
Sbjct: 648 KTKKRH------CVVRQLTVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWF 701
Query: 258 KQDSPVEESDRIQRI--GSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQ 307
K + + E I +L+I V + D G++ C A + G K++ F
Sbjct: 702 KDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFI 753
Score = 102 bits (255), Expect = 6e-24
Identities = 39/304 (12%), Positives = 95/304 (31%), Gaps = 58/304 (19%)
Query: 70 DAGMYQCHVSADDDSAQMSAQVILGGELVEIASS-NQVVVDVGHRIELHCRVSPKRLSSA 128
++ C + S + +L ++ + + + +++ CR
Sbjct: 8 AVALWLCVETRAASVGLPSVSL----DLPRLSIQKDILTIKANTTLQITCRGQRD----- 58
Query: 129 KAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYR 188
L +++ RV+ + DG + L I +V +D
Sbjct: 59 -------LDWLWPNNQSGSEQRVEVTE-------CSDGLF----CKTLTIPKVIGNDT-G 99
Query: 189 SYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQG 248
+Y+C + + + + + S + + K+++V++PC
Sbjct: 100 AYKCFYRETDLASVIYV----YVQDYRSPFIASVSD-QHGVVYITENKNKTVVIPCLGSI 154
Query: 249 NPLPTI--KWYKQDSPVEESDRIQRIGSS-LSISHVEESDSGVWNCVANNSEGQDKMQLF 305
+ L Y + V + +RI +I S +G+ C A ++ +
Sbjct: 155 SNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQ---- 210
Query: 306 IQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPL 365
S +++ +LS + + + E ++L C+A+
Sbjct: 211 -----------SIMYIVVVVGYRIYDVVLSPSH------GIELSVGEKLVLNCTARTELN 253
Query: 366 PTIK 369
I
Sbjct: 254 VGID 257
Score = 76.3 bits (187), Expect = 3e-15
Identities = 25/187 (13%), Positives = 58/187 (31%), Gaps = 40/187 (21%)
Query: 190 YQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGN 249
+ C L SV+ L ++ + IL +K + ++ + C G
Sbjct: 12 WLCVETRAA-SVGLPSVS------------LDLPRLSIQKDILTIKANTTLQITCR--GQ 56
Query: 250 PLPTIKWYKQDSPVEESDRIQRIG-----SSLSISHVEESDSGVWNCVANNSEGQDKMQL 304
W S E+ + +L+I V +D+G + C ++ + +
Sbjct: 57 RDLDWLWPNNQSGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAYKCFYRETDLASVIYV 116
Query: 305 FIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNP 364
+ V + +++ + K+++V++PC +
Sbjct: 117 Y--------------------VQDYRSPFIASVSDQHGVVYITENKNKTVVIPCLGSISN 156
Query: 365 LPTIKYR 371
L
Sbjct: 157 LNVSLCA 163
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker,
immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Length = 642
Score = 151 bits (382), Expect = 6e-41
Identities = 63/383 (16%), Positives = 104/383 (27%), Gaps = 93/383 (24%)
Query: 5 IQVKSSLSIEMSPSGQVVVDVGHRIELHCRVS---PKRLSSAKAWLKDGLVLRRNSDEVL 61
+ V G + L C + P + S W +G + + L
Sbjct: 197 LNVLYGPDAPTISPLNTSYRSGENLNLSCHAASNPPAQYS----WFVNGTFQQSTQE--L 250
Query: 62 VLDRVQREDAGMYQCHVSADDDSAQMSA----QVILGGELVEIASSNQVVVDVGHRIELH 117
+ + ++G Y C D + V I S+N V+ + L
Sbjct: 251 FIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFITSNNSNPVEDEDAVALT 310
Query: 118 CRVS--PKRLSSAKAWLKDGLVLR-------RNSDEVLVLDRVQREDAGMYQCHIEDGKY 168
C W + L N + L L V R D G Y+C I++
Sbjct: 311 CEPEIQNTTYL----WWVNNQSLPVSPRLQLSNDNRTLTLLSVTRNDVGPYECGIQNE-- 364
Query: 169 HMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEK 228
VD SD +L+V G
Sbjct: 365 ----------LSVDHSD---------------PVILNVLYG------------PDDPTIS 387
Query: 229 HRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGV 288
+ ++ L C A NP W + + L IS++ E +SG+
Sbjct: 388 PSYTYYRPGVNLSLSCHAASNPPAQYSWLIDGNIQQH-------TQELFISNITEKNSGL 440
Query: 289 WNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNV 348
+ C ANNS + I E K +S+ V
Sbjct: 441 YTCQANNSASGH---------------SRTTVKTITVSAELPKPSISSNN------SKPV 479
Query: 349 KKDESVILPCSAQGNPLPTIKYR 371
+ ++V C + + +
Sbjct: 480 EDKDAVAFTCEPEAQNTTYLWWV 502
Score = 145 bits (366), Expect = 1e-38
Identities = 58/377 (15%), Positives = 110/377 (29%), Gaps = 97/377 (25%)
Query: 13 IEMSPSGQVVVDVGHRIELHCRVS--PKRLSSAKAWLKDGLVLR-------RNSDEVLVL 63
++ + V+ + L C W + L N + L L
Sbjct: 291 PFITSNNSNPVEDEDAVALTCEPEIQNTTYL----WWVNNQSLPVSPRLQLSNDNRTLTL 346
Query: 64 DRVQREDAGMYQCHVS---ADDDSAQMSAQVILGGELVEIASSNQVVVDVGHRIELHCRV 120
V R D G Y+C + + D S + V+ G + I+ S G + L C
Sbjct: 347 LSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTYY-RPGVNLSLSCHA 405
Query: 121 SPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQ 180
+ + WL DG + + L + + +++G+Y C
Sbjct: 406 ASNPPAQYS-WLIDGNIQQHTQ--ELFISNITEKNSGLYTCQAN---------------- 446
Query: 181 VDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILN----VKK 236
N S T K + +A++ + N V+
Sbjct: 447 ---------------NSA----------SGHSRTTVKTITVSAELPKPSISSNNSKPVED 481
Query: 237 DESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI--GSSLSISHVEESDSGVWNCVAN 294
++V C + T W+ + S R+Q +L++ +V +D+ + C
Sbjct: 482 KDAVAFTCEPEAQN-TTYLWWVNGQSLPVSPRLQLSNGNRTLTLFNVTRNDARAYVCGIQ 540
Query: 295 NSEGQDK---MQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKD 351
NS ++ + L + Y +
Sbjct: 541 NSVSANRSDPVTLDVLYG--------------------------PDTPIISPPDSSYLSG 574
Query: 352 ESVILPCSAQGNPLPTI 368
++ L C + NP P
Sbjct: 575 ANLNLSCHSASNPSPQY 591
Score = 133 bits (335), Expect = 2e-34
Identities = 53/301 (17%), Positives = 90/301 (29%), Gaps = 67/301 (22%)
Query: 13 IEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAG 72
+SPS G + L C + + WL DG + + L + + +++G
Sbjct: 384 PTISPS-YTYYRPGVNLSLSCHAASNPPAQYS-WLIDGNIQQHTQ--ELFISNITEKNSG 439
Query: 73 MYQCHV--SADDDSAQMSAQVILGGEL--VEIASSNQVVVDVGHRIELHCRV--SPKRLS 126
+Y C SA S + + EL I+S+N V+ + C
Sbjct: 440 LYTCQANNSASGHSRTTVKTITVSAELPKPSISSNNSKPVEDKDAVAFTCEPEAQNT--- 496
Query: 127 SAKAWLKDGLVLRRNS-------DEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIH 179
W +G L + + L L V R DA Y C I++
Sbjct: 497 -TYLWWVNGQSLPVSPRLQLSNGNRTLTLFNVTRNDARAYVCGIQNS------------V 543
Query: 180 QVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDES 239
+ SD L V G + +
Sbjct: 544 SANRSDPVT---------------LDVLYG------------PDTPIISPPDSSYLSGAN 576
Query: 240 VILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQ 299
+ L C + NP P W P + + L I+ + +++G + C +N
Sbjct: 577 LNLSCHSASNPSPQYSWRINGIPQQHT-------QVLFIAKITPNNNGTYACFVSNLATG 629
Query: 300 D 300
Sbjct: 630 R 630
Score = 132 bits (332), Expect = 5e-34
Identities = 62/389 (15%), Positives = 117/389 (30%), Gaps = 94/389 (24%)
Query: 11 LSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN-------------- 56
L+IE +P V G + L P+ L W K V
Sbjct: 2 LTIESTP---FNVAEGKEVLLLVHNLPQHLFGYS-WYKGERVDGNRQIIGYVIGTQQATP 57
Query: 57 -----------SDEVLVLDRVQREDAGMYQCHVSADDD-SAQMSAQVILGGEL--VEIAS 102
+ L++ + + D G Y HV D + + + Q + EL I+S
Sbjct: 58 GPAYSGREIIYPNASLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISS 117
Query: 103 SNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCH 162
+N V+ + C + + W + L + L
Sbjct: 118 NNSKPVEDKDAVAFTCEPETQDATYL--WWVNNQSLPVSPRLQLSNG------------- 162
Query: 163 IEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSA 222
+ L + V +D SY+C N ++ SV L++
Sbjct: 163 ----------NRTLTLFNVTRNDTA-SYKCETQNPVSARRSDSV---ILNVLY-----GP 203
Query: 223 AKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVE 282
+ + E++ L C A NP W+ + + + L I ++
Sbjct: 204 DAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWFVNGTFQQST-------QELFIPNIT 256
Query: 283 ESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEK 342
++SG + C A+NS+ + I E K +++
Sbjct: 257 VNNSGSYTCQAHNSDTGLN---------------RTTVTTITVYAEPPKPFITSNNSNP- 300
Query: 343 HRILNVKKDESVILPCSAQGNPLPTIKYR 371
V+ +++V L C + + +
Sbjct: 301 -----VEDEDAVALTCEPEIQNTTYLWWV 324
Score = 58.0 bits (140), Expect = 2e-09
Identities = 15/92 (16%), Positives = 28/92 (30%), Gaps = 9/92 (9%)
Query: 5 IQVKSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKA---WLKDGLVLRRNSDEVL 61
+ V + G + L C + S+ W +G+ + VL
Sbjct: 553 LDVLYGPDTPIISPPDSSYLSGANLNLSCHSA----SNPSPQYSWRINGIPQQHTQ--VL 606
Query: 62 VLDRVQREDAGMYQCHVSADDDSAQMSAQVIL 93
+ ++ + G Y C VS S +
Sbjct: 607 FIAKITPNNNGTYACFVSNLATGRNNSIVKSI 638
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane,
transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo
sapiens}
Length = 291
Score = 139 bits (353), Expect = 5e-39
Identities = 61/313 (19%), Positives = 114/313 (36%), Gaps = 60/313 (19%)
Query: 9 SSLSIEMSPSGQVVVDVGHRIELHCRVS--PKRLSSAKAWLKDG---------LVLRRNS 57
+ L + +S S +V + VG C P+ + + G +V +
Sbjct: 3 ALLQVTISLS-KVELSVGESKFFTCTAIGEPESIDW---YNPQGEKIISTQRVVVQKEGV 58
Query: 58 DEVLVLDRVQREDAGMYQCHVSADDDSAQM-SAQVILGGELVEIASSNQVVVDVGHRIEL 116
L + EDAG+Y+C + Q + + + +L + G E+
Sbjct: 59 RSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEV 118
Query: 117 HCRVS--PK-RLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSS 173
CRVS P +S WL + SD ++ ML++
Sbjct: 119 VCRVSSSPAPAVS----WLYHNEEVTTISD----------------------NRFAMLAN 152
Query: 174 GELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMF---EKHR 230
L I +++SD Y+C G + G +++ +K
Sbjct: 153 NNLQILNINKSDEGI-YRCEGRVEARGEIDFRDII---------VIVNVPPAISMPQKSF 202
Query: 231 ILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI--GSSLSISHVEESDSGV 288
++ E + C A G+P P I W++ +EE+++ + L++ ++ SD G
Sbjct: 203 NATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGP 262
Query: 289 WNCVANNSEGQDK 301
+ C A N G+D+
Sbjct: 263 YVCRATNKAGEDE 275
Score = 107 bits (268), Expect = 6e-27
Identities = 44/279 (15%), Positives = 81/279 (29%), Gaps = 80/279 (28%)
Query: 106 VVVDVGHRIELHCRVS--PKRLSSAKAWLKDG---------LVLRRNSDEVLVLDRVQRE 154
V + VG C P+ + + G +V + L + E
Sbjct: 14 VELSVGESKFFTCTAIGEPESIDW---YNPQGEKIISTQRVVVQKEGVRSRLTIYNANIE 70
Query: 155 DAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLT 214
DAG+Y+C D + G+ + L +
Sbjct: 71 DAGIYRCQATD------AKGQ------TQEATVV---------------LEIY------- 96
Query: 215 ENKRLLSAAKMFEKH-RILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEE--SDRIQR 271
F + K+ E + C +P P + W + V +R
Sbjct: 97 -------QKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAM 149
Query: 272 IGS-SLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKN 330
+ + +L I ++ +SD G++ C A G+ + ++I V
Sbjct: 150 LANNNLQILNINKSDEGIYRCEGRVE------------ARGE--IDFRDIIVIVNVPPAI 195
Query: 331 KRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIK 369
+K ++ E + C A G+P P I
Sbjct: 196 SMP-------QKSFNATAERGEEMTFSCRASGSPEPAIS 227
Score = 33.6 bits (77), Expect = 0.089
Identities = 7/24 (29%), Positives = 9/24 (37%)
Query: 348 VKKDESVILPCSAQGNPLPTIKYR 371
+ ES C+A G P Y
Sbjct: 16 LSVGESKFFTCTAIGEPESIDWYN 39
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein;
1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Length = 284
Score = 137 bits (346), Expect = 4e-38
Identities = 55/318 (17%), Positives = 108/318 (33%), Gaps = 63/318 (19%)
Query: 12 SIEMSPSGQVVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRNSDE--------- 59
++ P V + +G C V+ +++ W KD +R +
Sbjct: 7 FFDLKPV-SVDLALGESGTFKCHVTGTAPIKIT----WAKDNREIRPGGNYKMTLVENTA 61
Query: 60 VLVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGELVEIAS-SNQVVVDVGHRIELHC 118
L + +V + DAG Y C+ S SAQ+ + I +V C
Sbjct: 62 TLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYEC 121
Query: 119 RVS--PK-RLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGE 175
++ P+ ++ W KD ++ +S ++ +
Sbjct: 122 KIGGSPEIKVL----WYKDETEIQESSK---------------FRMSFVES------VAV 156
Query: 176 LIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVK 235
L ++ + D Y C N G++ S + L + +K +
Sbjct: 157 LEMYNLSVEDSGD-YTCEAHNAA-GSASSSTS-----LK----VKEPPVFRKKPHPVETL 205
Query: 236 KDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI----GSSLSISHVEESDSGVWNC 291
K V L C QG P + W+K + + + + +S+ I +V+ +D G + C
Sbjct: 206 KGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQC 265
Query: 292 VANNSEGQD--KMQLFIQ 307
A+N G + ++
Sbjct: 266 KASNDVGSYTCVGSITLK 283
Score = 116 bits (293), Expect = 2e-30
Identities = 51/281 (18%), Positives = 89/281 (31%), Gaps = 87/281 (30%)
Query: 106 VVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRNSDE---------VLVLDRVQR 153
V + +G C V+ +++ W KD +R + L + +V +
Sbjct: 15 VDLALGESGTFKCHVTGTAPIKIT----WAKDNREIRPGGNYKMTLVENTATLTVLKVTK 70
Query: 154 EDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSL 213
DAG Y C+ + +G+ S + L V
Sbjct: 71 GDAGQYTCYASN------VAGK------------DSCSAQ----------LGVQ------ 96
Query: 214 TENKRLLSAAKMFEKHRIL-NVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI 272
+ +K VK+DE C G+P + WYK ++ ++ES + +
Sbjct: 97 -------EPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMS 149
Query: 273 ----GSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDE 328
+ L + ++ DSG + C A+N+ G SS L +
Sbjct: 150 FVESVAVLEMYNLSVEDSGDYTCEAHNAAGSAS---------------SSTSLKVK---- 190
Query: 329 KNKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIK 369
+K + K V L C QG P +
Sbjct: 191 ------EPPVFRKKPHPVETLKGADVHLECELQGTPPFQVS 225
Score = 83.6 bits (207), Expect = 2e-18
Identities = 36/187 (19%), Positives = 59/187 (31%), Gaps = 42/187 (22%)
Query: 4 FIQVKSSLSIEMSPSGQVVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRNSDE- 59
+ V+ +V C++ P+ ++ W KD ++ +S
Sbjct: 92 QLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVL----WYKDETEIQESSKFR 147
Query: 60 --------VLVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGELVEIA-----SSNQV 106
VL + + ED+G Y C SA S + V+ + V
Sbjct: 148 MSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLK-----VKEPPVFRKKPHPV 202
Query: 107 VVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRNSD---------EVLVLDRVQRE 154
G + L C + P ++S W KD LR + + V
Sbjct: 203 ETLKGADVHLECELQGTPPFQVS----WHKDKRELRSGKKYKIMSENFLTSIHILNVDSA 258
Query: 155 DAGMYQC 161
D G YQC
Sbjct: 259 DIGEYQC 265
Score = 33.9 bits (78), Expect = 0.063
Identities = 6/31 (19%), Positives = 10/31 (32%), Gaps = 1/31 (3%)
Query: 340 FEKH-RILNVKKDESVILPCSAQGNPLPTIK 369
F+ +++ ES C G I
Sbjct: 8 FDLKPVSVDLALGESGTFKCHVTGTAPIKIT 38
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM;
2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
PDB: 1ie5_A
Length = 291
Score = 135 bits (342), Expect = 2e-37
Identities = 60/315 (19%), Positives = 111/315 (35%), Gaps = 62/315 (19%)
Query: 11 LSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDE----------- 59
L +++ PS Q + VG C+V+ +W + +
Sbjct: 3 LQVDIVPS-QGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDS 61
Query: 60 -VLVLDRVQREDAGMYQCHVSADDDSAQM-SAQVILGGELVEIASSNQVVVDVGHRIELH 117
L + +DAG+Y+C V+A+D + + V + +L+ + G +
Sbjct: 62 STLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIV 121
Query: 118 CRVS---PKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSG 174
C V P + W G + D ++ +LS+
Sbjct: 122 CDVVSSLPPTII----WKHKGRDVILKKD----------------------VRFIVLSNN 155
Query: 175 ELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRIL-- 232
L I + ++D +Y+C G G +N + + N + + +
Sbjct: 156 YLQIRGIKKTDE-GTYRCEGRILARGE----INFKDIQVIVN-----VPPTVQARQSIVN 205
Query: 233 -NVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI------GSSLSISHVEESD 285
+SV L C A G P PT+ W K P+E + S L+I +V+++D
Sbjct: 206 ATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKND 265
Query: 286 SGVWNCVANNSEGQD 300
+ C+A N G+
Sbjct: 266 EAEYVCIAENKAGEQ 280
Score = 103 bits (258), Expect = 2e-25
Identities = 46/281 (16%), Positives = 92/281 (32%), Gaps = 65/281 (23%)
Query: 98 VEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLK-DGLVLRRNSDEVLVLDRVQREDA 156
V+I S + VG C+V+ +W +G L N + V+
Sbjct: 5 VDIVPSQGEIS-VGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVV-------- 55
Query: 157 GMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTEN 216
++ S L I+ + D Y+C + S +++
Sbjct: 56 -----------WNDDDSSTLTIYNANIDDAGI-YKCVVTAEDGTQS-----EATVNVKIF 98
Query: 217 KRLLSAAKMFEKH-RILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI--- 272
++L MF+ K+ E ++ C + PTI W + V ++ I
Sbjct: 99 QKL-----MFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLS 153
Query: 273 GSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKR 332
+ L I ++++D G + C + ++ K+ +
Sbjct: 154 NNYLQIRGIKKTDEGTYRCEGRILARGE-------------------------INFKDIQ 188
Query: 333 L-LSAAKMFEKHRIL---NVKKDESVILPCSAQGNPLPTIK 369
+ ++ + + + +SV L C A G P PT+
Sbjct: 189 VIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMS 229
Score = 47.6 bits (113), Expect = 3e-06
Identities = 17/104 (16%), Positives = 31/104 (29%), Gaps = 17/104 (16%)
Query: 2 QLFIQVKSSLSIEMSPSGQVVVDVGHRIELHCRV--SPKRLSSAKAWLKDGLVLRRNSDE 59
Q+ + V ++ S +G + L C P+ +W KDG + ++
Sbjct: 188 QVIVNVPPTVQARQSIVNATAN-LGQSVTLVCDADGFPE---PTMSWTKDGEPIENEEED 243
Query: 60 -----------VLVLDRVQREDAGMYQCHVSADDDSAQMSAQVI 92
L + V + D Y C S +
Sbjct: 244 DEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLK 287
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor
tyrosine kinase, growth factor cytoki dimerization,
transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Length = 524
Score = 140 bits (353), Expect = 2e-37
Identities = 48/374 (12%), Positives = 106/374 (28%), Gaps = 73/374 (19%)
Query: 6 QVKSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDE-VLVLD 64
S SI S ++V VG I L C + W + L + + + +
Sbjct: 32 GEPSPPSIHPGKS-DLIVRVGDEIRLLCTDPG-FVK----WTFEILDETNENKQNEWITE 85
Query: 65 RVQREDAGMYQCHVSADDDSAQMSAQVILGGELVEIASSNQVVVDVGHRIELHCRVSPKR 124
+ + + G Y C S V + + + + C ++
Sbjct: 86 KAEATNTGKYTCTNK---HGLSNSIYVFVRDPAKLFLVDRSLYGKEDNDTLVRCPLTDPE 142
Query: 125 LSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDES 184
+++ + + D ++ ++I V +
Sbjct: 143 VTN---------YSLKGCQGKPLPK---------------DLRFIPDPKAGIMIKSVKRA 178
Query: 185 DRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPC 244
C + SV + L + + +++ E + C
Sbjct: 179 YHRLCLHCSVDQEGK-----SVLSEKFILKVRPAFKAVPVVSVSKASYLLREGEEFTVTC 233
Query: 245 SAQGNPLPT-IKWYKQDSPVEESDRIQ---------RIGSSLSISHVEESDSGVWNCVAN 294
+ + W +++S + ++ ++L+IS +DSGV+ C AN
Sbjct: 234 TIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYAN 293
Query: 295 NSEGQDKMQLFIQ-YAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKDES 353
N+ G + ++ G ++ + + V E+
Sbjct: 294 NTFGSANVTTTLEVVDKGFINIFP-----------------------MINTTVFVNDGEN 330
Query: 354 VILPCSAQGNPLPT 367
V L + P P
Sbjct: 331 VDLIVEYEAFPKPE 344
Score = 132 bits (332), Expect = 2e-34
Identities = 52/394 (13%), Positives = 113/394 (28%), Gaps = 90/394 (22%)
Query: 3 LFIQVKSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN------ 56
+F++ + L + + + + C ++ +++ G L ++
Sbjct: 109 VFVRDPAKLFLVDRS---LYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLPKDLRFIPD 165
Query: 57 SDEVLVLDRVQR-EDAGMYQCHVSADDDSAQMSAQVILGGELVE------IASSNQVVVD 109
+++ V+R C V + S S + IL S ++
Sbjct: 166 PKAGIMIKSVKRAYHRLCLHCSVDQEGKSVL-SEKFILKVRPAFKAVPVVSVSKASYLLR 224
Query: 110 VGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYH 169
G + C + S W ++ + G ++
Sbjct: 225 EGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNS----------------WHHGDFN 268
Query: 170 MLSSGELIIHQVDESDRYRSYQCRGVNKLTGAS---LLSVN-RGRLSLTENKRLLSAAKM 225
L I +D + C N A+ L V +G +++
Sbjct: 269 YERQATLTISSARVNDS-GVFMCYANNTFGSANVTTTLEVVDKGFINIFP---------- 317
Query: 226 FEKHRILNVKKDESVILPCSAQGNPLPT-IKWYKQDSPVEESDRIQ---------RIGSS 275
+ + V E+V L + P P +W + + R S
Sbjct: 318 -MINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSE 376
Query: 276 LSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLS 335
L ++ ++ ++ G + + +NS+ + + ++
Sbjct: 377 LHLTRLKGTEGGTYTFLVSNSDVNAA---------------IAFNVYVN----------- 410
Query: 336 AAKMFEKHRILNVKKDESVILPCSAQGNPLPTIK 369
K IL + + +L C A G P PTI
Sbjct: 411 -----TKPEILTYDRLVNGMLQCVAAGFPEPTID 439
Score = 126 bits (318), Expect = 1e-32
Identities = 44/337 (13%), Positives = 91/337 (27%), Gaps = 82/337 (24%)
Query: 15 MSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNS--------------DEV 60
++ G + C + S W ++ +
Sbjct: 215 SVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQAT 274
Query: 61 LVLDRVQREDAGMYQCHVS--ADDDSAQMSAQVILGGELVEIASSNQVV-VDVGHRIELH 117
L + + D+G++ C+ + + + +V+ G + N V V+ G ++L
Sbjct: 275 LTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFINIFPMINTTVFVNDGENVDLI 334
Query: 118 CRVS----PKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSS 173
P+ W+ ++ + + ++
Sbjct: 335 VEYEAFPKPEHQQ----WIYMNRTFTDKWEDYP----------------KSENESNIRYV 374
Query: 174 GELIIHQVDESDRYRSYQCRGVNKLTGASL---LSVNRGRLSLTENKRLLSAAKMFEKHR 230
EL + ++ ++ Y N A++ + VN K
Sbjct: 375 SELHLTRLKGTEGGT-YTFLVSNSDVNAAIAFNVYVN-------------------TKPE 414
Query: 231 ILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDR----------------IQRIGS 274
IL + + +L C A G P PTI WY + ++
Sbjct: 415 ILTYDRLVNGMLQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVV 474
Query: 275 SLSISHVEESDSGVWNCVANNSEGQD--KMQLFIQYA 309
SI +G C A N G+ +
Sbjct: 475 QSSIDSSAFKHNGTVECKAYNDVGKTSAYFNFAFKGN 511
Score = 91.3 bits (226), Expect = 2e-20
Identities = 37/307 (12%), Positives = 80/307 (26%), Gaps = 77/307 (25%)
Query: 69 EDAGMYQCHV----SADDDSAQMSAQVILGGELVEIASSNQVVVDVGHRIELHCRVSPKR 124
A + C + S+Q S + ++V VG I L C
Sbjct: 5 RGAWDFLCVLLLLLRVQTGSSQPSVSPGEPSPPSIHPGKSDLIVRVGDEIRLLCTDPG-F 63
Query: 125 LSSAKAWLKDGLVLRRNSDE-VLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDE 183
+ W + L + + + ++ + + G Y C +
Sbjct: 64 VK----WTFEILDETNENKQNEWITEKAEATNTGKYTCTNK------------------- 100
Query: 184 SDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILP 243
+ L+ + + V AK+F R L K+D ++
Sbjct: 101 ------------HGLSNSIYVFVR-------------DPAKLFLVDRSLYGKEDNDTLVR 135
Query: 244 CSAQGNPLPTIKWYKQDS-PVEESDRI-QRIGSSLSISHVEES-DSGVWNCVANNSEGQD 300
C + P+ + R + + I V+ + +C +
Sbjct: 136 CPLTDPEVTNYSLKGCQGKPLPKDLRFIPDPKAGIMIKSVKRAYHRLCLHCSVDQEGKSV 195
Query: 301 KMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKDESVILPCSA 360
S + I+ V K + + +++ E + C+
Sbjct: 196 L----------------SEKFILK-VRPAFKAVPVVSVSKAS---YLLREGEEFTVTCTI 235
Query: 361 QGNPLPT 367
+
Sbjct: 236 KDVSSSV 242
Score = 67.0 bits (163), Expect = 2e-12
Identities = 25/182 (13%), Positives = 53/182 (29%), Gaps = 42/182 (23%)
Query: 190 YQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGN 249
+ C LL V G + + S + L V+ + + L C+ G
Sbjct: 10 FLC------VLLLLLRVQTGSSQPSVSPGEPSPPSIHPGKSDLIVRVGDEIRLLCTDPG- 62
Query: 250 PLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYA 309
+KW + ++ + E +++G + C + + +F++
Sbjct: 63 ---FVKWTFEILDETNENK----QNEWITEKAEATNTGKYTCTNKHGLSN-SIYVFVR-- 112
Query: 310 HGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIK 369
AK+F R L K+D ++ C +
Sbjct: 113 -------------------------DPAKLFLVDRSLYGKEDNDTLVRCPLTDPEVTNYS 147
Query: 370 YR 371
+
Sbjct: 148 LK 149
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, hematopoietic cytokine-receptor
complex, cell surface, EXTR complex; 7.80A {Homo
sapiens}
Length = 527
Score = 139 bits (351), Expect = 4e-37
Identities = 41/376 (10%), Positives = 98/376 (26%), Gaps = 75/376 (19%)
Query: 2 QLFIQVKSSLSIEMSPSGQVVVDVGHRIELHCRV--SPKRLSSAKAWLKDG---LVLRRN 56
+ ++++L + + ++ L C P+ + W+ +
Sbjct: 132 LFTVSIRNTLLYTLRRPYFRKM--ENQDALVCISESVPEPIVE---WVLCDSQGESCKEE 186
Query: 57 SDEVLVLDR--VQREDAGMYQCHVSADDDSAQMSAQVILGGELVEIASSNQVVVDVGHRI 114
S V+ + + +C + I + + Q+ + VG +
Sbjct: 187 SPAVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTIDLNQTPQTTLP-QLFLKVGEPL 245
Query: 115 ELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSG 174
+ C+ W + L + ++ M+
Sbjct: 246 WIRCKAVHVNHGFGLTWELENKALEEGNY---------------FEMSTYSTNRTMIRIL 290
Query: 175 ELIIHQVDESDRYRSYQCRGVNKLTGASLLSVN-RGRLSLTENKRLLSAAKMFEKHRILN 233
+ V +D Y C + ++L+++ +G ++ T +
Sbjct: 291 FAFVSSVARNDT-GYYTCSSSKHPSQSALVTIVEKGFINATNSSEDYE------------ 337
Query: 234 VKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVA 293
+ + E + P W + G S+S + G + A
Sbjct: 338 IDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNGYSISKFCNHKHQPGEYIFHA 397
Query: 294 NNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKDES 353
N + Q L I K ++ + + +
Sbjct: 398 ENDDAQFT---------------KMFTLNIR----------------RKPQV--LAEASA 424
Query: 354 VILPCSAQGNPLPTIK 369
C + G PLP+
Sbjct: 425 SQASCFSDGYPLPSWT 440
Score = 121 bits (305), Expect = 1e-30
Identities = 49/390 (12%), Positives = 104/390 (26%), Gaps = 91/390 (23%)
Query: 1 MQLFIQVKSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLR------ 54
+ ++ +SS ++ + V VDV I L V S W+ L
Sbjct: 40 LGCALRPQSSGTV--YEAAAVEVDVSASITLQVLVDAPGNISCL-WVFKHSSLNCQPHFD 96
Query: 55 --RNSDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGELVEIASSNQVVVDVGH 112
+V+ ++ AG Y + ++ + + V + L+ + +
Sbjct: 97 LQNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTLRRPYFRK-MEN 155
Query: 113 RIELHCRV--SPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHM 170
+ L C P+ + W+ +E +
Sbjct: 156 QDALVCISESVPEPIVE---WVLCDSQGESCKEE----------------------SPAV 190
Query: 171 LSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHR 230
+ E ++H++ +D +C N+ T +
Sbjct: 191 VKKEEKVLHELFGTD----IRCCARNE-----------LGRECTRLFTIDLNQTPQTTLP 235
Query: 231 ILNVKKDESVILPCSAQG-NPLPTIKWYKQDSPVEESDRIQRI----------GSSLSIS 279
L +K E + + C A N + W ++ +EE + + +S
Sbjct: 236 QLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVS 295
Query: 280 HVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKM 339
V +D+G + C ++ S + I EK
Sbjct: 296 SVARNDTGYYTCSSSKHPS------------------QSALVTIV---EK-----GFINA 329
Query: 340 FEKHRILNVKKDESVILPCSAQGNPLPTIK 369
+ + E + P
Sbjct: 330 TNSSEDYEIDQYEEFCFSVRFKAYPQIRCT 359
Score = 113 bits (283), Expect = 8e-28
Identities = 41/341 (12%), Positives = 75/341 (21%), Gaps = 95/341 (27%)
Query: 5 IQVKSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDE----- 59
I + + + Q+ + VG + + C+ W + L +
Sbjct: 224 IDLNQTPQTTLP---QLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTY 280
Query: 60 ----------VLVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGELVEIASSNQVVVD 109
+ V R D G Y C S S ++ G + SS +D
Sbjct: 281 STNRTMIRILFAFVSSVARNDTGYYTCSSS-KHPSQSALVTIVEKGFINATNSSEDYEID 339
Query: 110 VGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNS-----DEVLVLDRVQREDAGMYQCHIE 164
R W + + G
Sbjct: 340 QYEEFCFSVRFKAYPQIRCT-WTFSRKSFPCEQKGLDNGYSISKFCNHKHQPG------- 391
Query: 165 DGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASL---LSVNRGRLSLTENKRLLS 221
Y N + L++
Sbjct: 392 ------------------------EYIFHAENDDAQFTKMFTLNIR-------------- 413
Query: 222 AAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSP---------------VEES 266
K ++ + + + C + G PLP+ W K
Sbjct: 414 -----RKPQV--LAEASASQASCFSDGYPLPSWTWKKCSDKSPNCTEEITEGVWNRKANR 466
Query: 267 DRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQ 307
+ SS +++ E + C A NS G + +
Sbjct: 467 KVFGQWVSSSTLNMSEAIKGFLVKCCAYNSLGTSCETILLN 507
Score = 91.7 bits (227), Expect = 2e-20
Identities = 41/314 (13%), Positives = 74/314 (23%), Gaps = 84/314 (26%)
Query: 66 VQREDAGMYQCHVSADDDSAQMSAQVILGGELVEIASSNQ-VVVDVGHRIELHCRVSPKR 124
+ Y + +D L + V VDV I L V
Sbjct: 22 SSVGKSSSYPMVSESPEDLG-----CALRPQSSGTVYEAAAVEVDVSASITLQVLVDAPG 76
Query: 125 LSSAKAWLKDGLVLR--------RNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGEL 176
S W+ L +V+ ++ AG Y I+
Sbjct: 77 NISCL-WVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQ------------ 123
Query: 177 IIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKK 236
++ T ++ +++ ++ R K
Sbjct: 124 -------------------SEATNYTI------LFTVSIR-----NTLLYTLRRPYFRKM 153
Query: 237 DESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNS 296
+ L C ++ P P ++W DS E + E C A N
Sbjct: 154 ENQDALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVLHELFGTDIRCCARNE 213
Query: 297 EGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKDESVIL 356
G++ +LF + +K E + +
Sbjct: 214 LGRECTRLFTIDLNQTPQTTLPQLF--------------------------LKVGEPLWI 247
Query: 357 PCSAQG-NPLPTIK 369
C A N +
Sbjct: 248 RCKAVHVNHGFGLT 261
Score = 90.9 bits (225), Expect = 3e-20
Identities = 25/226 (11%), Positives = 56/226 (24%), Gaps = 58/226 (25%)
Query: 151 VQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRS--YQCRGVNKLTGASLLSVNR 208
+D + +C LI H+ ++S +S Y + L
Sbjct: 2 TGNQDLPVIKC-------------VLINHKNNDSSVGKSSSYPMVSESPEDLGCALRPQ- 47
Query: 209 GRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDR 268
++ + + V S+ L + W + S +
Sbjct: 48 -------------SSGTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPH 94
Query: 269 IQRIG---SSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQ 325
S+ I + E+ +G + + + I
Sbjct: 95 FDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNYT---------------ILFTVSIR- 138
Query: 326 VDEKNKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKYR 371
++ R K + L C ++ P P +++
Sbjct: 139 ----------NTLLYTLRRPYFRKMENQDALVCISESVPEPIVEWV 174
Score = 67.4 bits (164), Expect = 2e-12
Identities = 17/183 (9%), Positives = 40/183 (21%), Gaps = 34/183 (18%)
Query: 4 FIQVKSSLSIEMSPSGQVV-VDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNS----- 57
+ + I + S + +D R W
Sbjct: 318 LVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCT-WTFSRKSFPCEQKGLDN 376
Query: 58 DEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGELVEIASSNQVVVDVGHRIELH 117
+ + G Y H DD + + V+ +
Sbjct: 377 GYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLN-----IRRKP---QVLAEASASQAS 428
Query: 118 CRVS------------PKRLSSAKAWLKDGLVLRRNSDEV-------LVLDRVQREDAGM 158
C + + + +G+ R+ + +V L+ + +
Sbjct: 429 CFSDGYPLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNMSEAIKGFL 488
Query: 159 YQC 161
+C
Sbjct: 489 VKC 491
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth
factor-receptor complex, receptor tyrosine kinase, CY
4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus
musculus}
Length = 289
Score = 131 bits (332), Expect = 5e-36
Identities = 48/302 (15%), Positives = 95/302 (31%), Gaps = 47/302 (15%)
Query: 12 SIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDE----VLVLDRVQ 67
IE S ++VV+ G + L C + + W E L
Sbjct: 6 VIEPSGP-ELVVEPGETVTLRCVSN-----GSVEWDGPISPYWTLDPESPGSTLTTRNAT 59
Query: 68 REDAGMYQCHVSADDDSAQMSAQV-ILGGELVEIASSNQVVVDVGHRIELHCRVSPKRLS 126
++ G Y+C D + + + + + +V V G L C ++ L
Sbjct: 60 FKNTGTYRCTELEDPMAGSTTIHLYVKDPAHSWNLLAQEVTVVEGQEAVLPCLITDPALK 119
Query: 127 SAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDR 186
+ + +++G + Y II + D
Sbjct: 120 DSVSLMREGGRQ-----------------------VLRKTVYFFSPWRGFIIRKAKVLDS 156
Query: 187 YRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSA 246
+Y C+ + + L N+ ++ + L + E+ + CSA
Sbjct: 157 -NTYVCKTMVNGRE-----STSTGIWLKVNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSA 210
Query: 247 QGNPLPTIKWYKQDSPVEE-------SDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQ 299
+ K+ E D + +LS++ V+ D+G+++CVA+N G
Sbjct: 211 TNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGT 270
Query: 300 DK 301
Sbjct: 271 RT 272
Score = 93.9 bits (233), Expect = 5e-22
Identities = 29/275 (10%), Positives = 67/275 (24%), Gaps = 74/275 (26%)
Query: 102 SSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDE----VLVLDRVQREDAG 157
S ++VV+ G + L C + + W E L ++ G
Sbjct: 10 SGPELVVEPGETVTLRCVSN-----GSVEWDGPISPYWTLDPESPGSTLTTRNATFKNTG 64
Query: 158 MYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENK 217
Y+C + ++ L +
Sbjct: 65 TYRCTELEDPMAGSTTIHLYVKD------------------------------------- 87
Query: 218 RLLSAAKMF-EKHRILNVKKDESVILPCSAQG-NPLPTIKWYKQDSPVEESDRIQRI--G 273
A + + + V + + +LPC ++ ++ +
Sbjct: 88 ----PAHSWNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFFSPW 143
Query: 274 SSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRL 333
I + DS + C + + S + + N+
Sbjct: 144 RGFIIRKAKVLDSNTYVCKTMVNGREST----------------STGIWLKV----NRVH 183
Query: 334 LSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTI 368
++ + L + E+ + CSA +
Sbjct: 184 PEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFN 218
Score = 81.9 bits (202), Expect = 7e-18
Identities = 27/200 (13%), Positives = 61/200 (30%), Gaps = 25/200 (12%)
Query: 4 FIQVKSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVL-------RRN 56
+ VK + +V V G L C ++ L + + +++G +
Sbjct: 82 HLYVKDPAHSWNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFFS 141
Query: 57 SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGELVE------IASSNQVVVDV 110
++ + + D+ Y C + S + L V +++V
Sbjct: 142 PWRGFIIRKAKVLDSNTYVCKTM-VNGRESTSTGIWLKVNRVHPEPPQIKLEPSKLVRIR 200
Query: 111 GHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDE-----------VLVLDRVQREDAGMY 159
G ++ C + + + L + L L+ V +DAG+Y
Sbjct: 201 GEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIY 260
Query: 160 QCHIEDGKYHMLSSGELIIH 179
C + ++ +
Sbjct: 261 SCVASNDVGTRTATMNFQVV 280
Score = 68.8 bits (168), Expect = 2e-13
Identities = 21/138 (15%), Positives = 45/138 (32%), Gaps = 32/138 (23%)
Query: 234 VKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVA 293
V+ E+V L C + G +++W SP D + GS+L+ + ++G + C
Sbjct: 16 VEPGETVTLRCVSNG----SVEWDGPISPYWTLD-PESPGSTLTTRNATFKNTGTYRCTE 70
Query: 294 NNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMF-EKHRILNVKKDE 352
++ L + A + + + V + +
Sbjct: 71 LEDPMAGS---------------TTIHLYVKD----------PAHSWNLLAQEVTVVEGQ 105
Query: 353 SVILPCSAQG-NPLPTIK 369
+LPC ++
Sbjct: 106 EAVLPCLITDPALKDSVS 123
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion
comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Length = 201
Score = 126 bits (317), Expect = 7e-35
Identities = 48/208 (23%), Positives = 85/208 (40%), Gaps = 29/208 (13%)
Query: 105 QVVVDVGHRIELHCRVS---PKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQC 161
+V V G + L C P LS WL + + D+
Sbjct: 17 EVRVKEGKGMVLLCDPPYHFPDDLS--YRWLLNEFPVFITMDK----------------- 57
Query: 162 HIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLS 221
++ ++G L I V+ SD+ +Y C + S+ S + + E
Sbjct: 58 ----RRFVSQTNGNLYIANVEASDK-GNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPY 112
Query: 222 AAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHV 281
A + + + + ++V L C A GNP+P I+W K P+ + I G+ L I ++
Sbjct: 113 PADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEISTSGAVLKIFNI 172
Query: 282 EESDSGVWNCVANNSEGQDK--MQLFIQ 307
+ D G++ C A N G+DK ++++Q
Sbjct: 173 QLEDEGIYECEAENIRGKDKHQARIYVQ 200
Score = 88.0 bits (218), Expect = 9e-21
Identities = 38/190 (20%), Positives = 58/190 (30%), Gaps = 36/190 (18%)
Query: 20 QVVVDVGHRIELHCRVS---PKRLSSAKAWLKDGLVLRRNSDE---------VLVLDRVQ 67
+V V G + L C P LS WL + + D+ L + V+
Sbjct: 17 EVRVKEGKGMVLLCDPPYHFPDDLS--YRWLLNEFPVFITMDKRRFVSQTNGNLYIANVE 74
Query: 68 REDAGMYQCHVS-----ADDDSAQMSAQVILGGELVEIA-----SSNQVVVDVGHRIELH 117
D G Y C VS S + I V +G + L
Sbjct: 75 ASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLE 134
Query: 118 CRVS--PK-RLSSAKAWLKDGLVLRRN-----SDEVLVLDRVQREDAGMYQCHIEDGKYH 169
C P + W K + S VL + +Q ED G+Y+C E+ +
Sbjct: 135 CFALGNPVPDIR----WRKVLEPMPSTAEISTSGAVLKIFNIQLEDEGIYECEAENIRGK 190
Query: 170 MLSSGELIIH 179
+ +
Sbjct: 191 DKHQARIYVQ 200
Score = 84.9 bits (210), Expect = 1e-19
Identities = 27/144 (18%), Positives = 55/144 (38%), Gaps = 21/144 (14%)
Query: 232 LNVKKDESVILPCSAQGNPLP--TIKWYKQDSPVEESDRIQRI----GSSLSISHVEESD 285
+ VK+ + ++L C + + +W + PV + +R +L I++VE SD
Sbjct: 18 VRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNLYIANVEASD 77
Query: 286 SGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRI 345
G ++C ++ + I + A + + +
Sbjct: 78 KGNYSCFVSSPSITKS---------------VFSKFIPLIPIPERTTKPYPADIVVQFKD 122
Query: 346 LNVKKDESVILPCSAQGNPLPTIK 369
+ ++V L C A GNP+P I+
Sbjct: 123 VYALMGQNVTLECFALGNPVPDIR 146
Score = 56.0 bits (135), Expect = 2e-09
Identities = 17/89 (19%), Positives = 30/89 (33%), Gaps = 13/89 (14%)
Query: 12 SIEMSPSGQVVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRN-----SDEVLVL 63
I + + +G + L C P + W K + S VL +
Sbjct: 115 DIVVQFKDVYAL-MGQNVTLECFALGNPVPDIR----WRKVLEPMPSTAEISTSGAVLKI 169
Query: 64 DRVQREDAGMYQCHVSADDDSAQMSAQVI 92
+Q ED G+Y+C + A++
Sbjct: 170 FNIQLEDEGIYECEAENIRGKDKHQARIY 198
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-
like; 2.50A {Homo sapiens}
Length = 312
Score = 126 bits (317), Expect = 1e-33
Identities = 50/324 (15%), Positives = 101/324 (31%), Gaps = 68/324 (20%)
Query: 17 PSGQVVVDVGHRIELHCRVS-PKRLSSAKAWLKDGLVLRRNSD---------EVLVLDRV 66
V D + C PK S W KD + + + +
Sbjct: 9 VVVNVDDDGVISLNFECDKMTPK--SEFS-WSKDYVSTEDSPRLEVESKGNKTKMTFKDL 65
Query: 67 QREDAGMYQCHVSADDDSAQ------------MSAQVILGGELVEIASSNQVVVDVGHRI 114
+D G+Y C V+ D A ++ V + S V + ++
Sbjct: 66 GMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQV 125
Query: 115 ELHCRVSPKRLSSAKA---WLKDGLVLRRNSD-----------EVLVLDRVQREDAGMYQ 160
+ S A ++ + + + ++++Q ED G Y
Sbjct: 126 RFWMQAE---KLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYT 182
Query: 161 CHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLL 220
++DGK S+ L+ + + +Q + + G
Sbjct: 183 FQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPH------------------ 224
Query: 221 SAAKMFEKHRILNVKKDESVILPCSAQGNPLPT-IKWYKQDSPVEESDRIQRIG--SSLS 277
F ++ V + +V+L C T I WYK + + ++ +L
Sbjct: 225 -----FVEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLL 279
Query: 278 ISHVEESDSGVWNCVANNSEGQDK 301
I+ + D+G++ + + G+DK
Sbjct: 280 ITEFSKKDAGIYEVILKDDRGKDK 303
Score = 104 bits (261), Expect = 9e-26
Identities = 31/276 (11%), Positives = 74/276 (26%), Gaps = 48/276 (17%)
Query: 105 QVVVDVGHRIELHCRVS-PKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHI 163
V D + C PK S W KD +
Sbjct: 12 NVDDDGVISLNFECDKMTPK--SEFS-WSKDYVSTE------------------------ 44
Query: 164 EDGKYHMLSSG---ELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLL 220
+ + + S G ++ + D Y C + AS ++ L
Sbjct: 45 DSPRLEVESKGNKTKMTFKDLGMDDL-GIYSCDVTDTDGIASSYLIDEEELKRLLALSHE 103
Query: 221 SAAKMFEKHRILNVK---KDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGS--- 274
L V+ K + + + + + + + + E + +
Sbjct: 104 HKFPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNT 163
Query: 275 ---SLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNK 331
+ + +++ D G + + + + + + K +L ++ +
Sbjct: 164 GIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFK-------KLQKEAEFQRQE 216
Query: 332 RLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPT 367
+ F ++ V + +V+L C T
Sbjct: 217 WIRKQGPHFVEYLSWEVTGECNVLLKCKVANIKKET 252
Score = 67.3 bits (164), Expect = 9e-13
Identities = 17/141 (12%), Positives = 42/141 (29%), Gaps = 19/141 (13%)
Query: 234 VKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDR--IQRIG--SSLSISHVEESDSGVW 289
S+ C P W K E+S R ++ G + ++ + D G++
Sbjct: 15 DDGVISLNFECDK-MTPKSEFSWSKDYVSTEDSPRLEVESKGNKTKMTFKDLGMDDLGIY 73
Query: 290 NCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVK 349
+C +++G +++ EL + + + +
Sbjct: 74 SCDVTDTDGIASS-----------YLIDEEELKRLLALSHEHKF--PTVPVKSELAVEIL 120
Query: 350 KDESVILPCSAQ-GNPLPTIK 369
+ V A+ + +
Sbjct: 121 EKGQVRFWMQAEKLSGNAKVN 141
Score = 51.5 bits (123), Expect = 1e-07
Identities = 13/80 (16%), Positives = 32/80 (40%), Gaps = 7/80 (8%)
Query: 20 QVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLR-------RNSDEVLVLDRVQREDAG 72
V + L C+V+ + + W KD + ++ L++ ++DAG
Sbjct: 230 SWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAG 289
Query: 73 MYQCHVSADDDSAQMSAQVI 92
+Y+ + D + +++
Sbjct: 290 IYEVILKDDRGKDKSRLKLV 309
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG
B3P; 2.60A {Homo sapiens}
Length = 304
Score = 125 bits (315), Expect = 2e-33
Identities = 57/319 (17%), Positives = 107/319 (33%), Gaps = 63/319 (19%)
Query: 7 VKSSLSIEMSPSGQVVVDVGHRIELHCRVS--PK-RLSSAKAWLKDG----------LVL 53
+ P Q+ V G C+ + PK R++ W K G +
Sbjct: 3 GEEPPRFIKEPKDQIGV-SGGVASFVCQATGDPKPRVT----WNKKGKKVNSQRFETIEF 57
Query: 54 RRNSDEVLVLDRVQR-EDAGMYQCHVSADDDSAQMSAQVILGGELVEIASSNQ------- 105
++ VL + ++ D +Y+C + A++ + E +
Sbjct: 58 DESAGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQL 117
Query: 106 VVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCH 162
VV+ + C S P ++ W KD L + ++
Sbjct: 118 KVVERTRTATMLCAASGNPDPEIT----WFKDFLPVDPSAS------------------- 154
Query: 163 IEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSA 222
+G+ L SG L I +E+D+ + Y+C N N L +
Sbjct: 155 --NGRIKQLRSGALQIESSEETDQGK-YECVATNSAGVRYSSPAN---LYVRVQNVAPRF 208
Query: 223 AKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVE 282
+ + H + +V + C A G+P+P +KW + + D + + +
Sbjct: 209 SILPMSHE---IMPGGNVNITCVAVGSPMPYVKWMQGAEDLTPEDDMPV--GRNVLELTD 263
Query: 283 ESDSGVWNCVANNSEGQDK 301
DS + CVA +S G +
Sbjct: 264 VKDSANYTCVAMSSLGVIE 282
Score = 115 bits (289), Expect = 9e-30
Identities = 55/272 (20%), Positives = 93/272 (34%), Gaps = 57/272 (20%)
Query: 106 VVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCH 162
+ G C+ + PK R++ W K G + E + D
Sbjct: 16 QIGVSGGVASFVCQATGDPKPRVT----WNKKGKKVNSQRFETIEFDE------------ 59
Query: 163 IEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSA 222
+ L I + Y+C N + + +L++ +L S
Sbjct: 60 --------SAGAVLRIQPLRTPRDENVYECVAQNSVGEIT----VHAKLTVLREDQLPSG 107
Query: 223 AKMFEKH-RILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI----GSSLS 277
+ ++ V++ + + C+A GNP P I W+K PV+ S RI +L
Sbjct: 108 FPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQ 167
Query: 278 ISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAA 337
I EE+D G + CVA NS G S L + + A
Sbjct: 168 IESSEETDQGKYECVATNSAGVRYS--------------SPANLYVRVQNV-------AP 206
Query: 338 KMFEKHRILNVKKDESVILPCSAQGNPLPTIK 369
+ + +V + C A G+P+P +K
Sbjct: 207 RFSILPMSHEIMPGGNVNITCVAVGSPMPYVK 238
Score = 54.1 bits (130), Expect = 2e-08
Identities = 17/98 (17%), Positives = 36/98 (36%), Gaps = 12/98 (12%)
Query: 2 QLFIQVKSSL-SIEMSPSGQVVVDVGHRIELHCRV--SPK-RLSSAKAWLKDGLVLRRNS 57
L+++V++ + P ++ G + + C SP + W++ L
Sbjct: 196 NLYVRVQNVAPRFSILPMSHEIM-PGGNVNITCVAVGSPMPYVK----WMQGAEDLTPED 250
Query: 58 DEV---LVLDRVQREDAGMYQCHVSADDDSAQMSAQVI 92
D VL+ +D+ Y C + + AQ+
Sbjct: 251 DMPVGRNVLELTDVKDSANYTCVAMSSLGVIEAVAQIT 288
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix
bundle cytokine, receptor tyrosine kinase glycosylation;
HET: NAG BMA; 3.00A {Homo sapiens}
Length = 292
Score = 123 bits (311), Expect = 5e-33
Identities = 47/305 (15%), Positives = 100/305 (32%), Gaps = 41/305 (13%)
Query: 12 SIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDA 71
IE S ++VV G + L C + + + S +L + ++
Sbjct: 6 VIEPSVP-ELVVKPGATVTLRCVGN-GSVEWDGPPSPHWTLYSDGSSSILSTNNATFQNT 63
Query: 72 GMYQCHVSADDDSAQMSAQV-ILGGELVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKA 130
G Y+C D + + + + +VVV L C ++ L + +
Sbjct: 64 GTYRCTEPGDPLGGSAAIHLYVKDPARPWNVLAQEVVVFEDQDALLPCLLTDPVLEAGVS 123
Query: 131 WLK-DGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRS 189
++ G L R+ Y IH+ +
Sbjct: 124 LVRVRGRPLMRH------------------------TNYSFSPWHGFTIHRAKFIQS-QD 158
Query: 190 YQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGN 249
YQC + G ++S+ + L K + + L + E+ + CSA
Sbjct: 159 YQCSALMG--GRKVMSI---SIRLKVQKVIPGPPALTLVPAELVRIRGEAAQIVCSASSV 213
Query: 250 PLPTIKWYKQDSPVEESDRIQRI-------GSSLSISHVEESDSGVWNCVANNSEGQDKM 302
+ + + ++ + +L++ V+ +G ++CVA+N +G+
Sbjct: 214 DVNFDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHST 273
Query: 303 QLFIQ 307
+F +
Sbjct: 274 SMFFR 278
Score = 86.2 bits (213), Expect = 2e-19
Identities = 29/271 (10%), Positives = 66/271 (24%), Gaps = 66/271 (24%)
Query: 102 SSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQC 161
S ++VV G + L C + + + S +L + ++ G Y+C
Sbjct: 10 SVPELVVKPGATVTLRCVGN-GSVEWDGPPSPHWTLYSDGSSSILSTNNATFQNTGTYRC 68
Query: 162 HIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLS 221
++ L +
Sbjct: 69 TEPGDPLGGSAAIHLYVK-----------------------------------------D 87
Query: 222 AAKMF-EKHRILNVKKDESVILPCSAQG-NPLPTIKWYKQDS-PVEESDRIQ-RIGSSLS 277
A+ + + + V +D+ +LPC + + P+ +
Sbjct: 88 PARPWNVLAQEVVVFEDQDALLPCLLTDPVLEAGVSLVRVRGRPLMRHTNYSFSPWHGFT 147
Query: 278 ISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAA 337
I + S + C A + + S + + +
Sbjct: 148 IHRAKFIQSQDYQCSALMGGRK----------------VMSISIRLKVQK----VIPGPP 187
Query: 338 KMFEKHRILNVKKDESVILPCSAQGNPLPTI 368
+ L + E+ + CSA +
Sbjct: 188 ALTLVPAELVRIRGEAAQIVCSASSVDVNFD 218
Score = 78.1 bits (192), Expect = 1e-16
Identities = 32/184 (17%), Positives = 59/184 (32%), Gaps = 27/184 (14%)
Query: 3 LFIQVKSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLK-DGLVLRRN----- 56
L+++ + ++ VVV L C ++ L + + ++ G L R+
Sbjct: 83 LYVKDPARPWNVLAQE--VVVFEDQDALLPCLLTDPVLEAGVSLVRVRGRPLMRHTNYSF 140
Query: 57 -SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGELVEIA------SSNQVVVD 109
+ R + + YQC MS + L + V ++V
Sbjct: 141 SPWHGFTIHRAKFIQSQDYQCSALM-GGRKVMSISIRLKVQKVIPGPPALTLVPAELVRI 199
Query: 110 VGHRIELHCRVSPKRLSSAKAWLKDGLVL-----------RRNSDEVLVLDRVQREDAGM 158
G ++ C S ++ + L R L LD+V + AG
Sbjct: 200 RGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGN 259
Query: 159 YQCH 162
Y C
Sbjct: 260 YSCV 263
Score = 66.5 bits (162), Expect = 1e-12
Identities = 22/142 (15%), Positives = 42/142 (29%), Gaps = 32/142 (22%)
Query: 232 LNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNC 291
L VK +V L C G +++W SP S LS ++ ++G + C
Sbjct: 14 LVVKPGATVTLRCVGNG----SVEWDGPPSPHWTLYSDGS-SSILSTNNATFQNTGTYRC 68
Query: 292 VANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMF-EKHRILNVKK 350
++ L + A+ + + + V +
Sbjct: 69 TEPGDPLGGS---------------AAIHLYVK----------DPARPWNVLAQEVVVFE 103
Query: 351 DESVILPCSAQG-NPLPTIKYR 371
D+ +LPC +
Sbjct: 104 DQDALLPCLLTDPVLEAGVSLV 125
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta
trefoil, IG domain, growth factor/growth factor receptor
complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 334
Score = 123 bits (311), Expect = 1e-32
Identities = 54/281 (19%), Positives = 79/281 (28%), Gaps = 46/281 (16%)
Query: 99 EIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN-----SDEVLVLDRVQR 153
E Q+V G +EL C W+KDG L + + L +
Sbjct: 11 EPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLVGPQRLQVLNASH 70
Query: 154 EDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSL 213
ED+G Y C + L V +D S + + +
Sbjct: 71 EDSGAYSCRQRL------TQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTR 124
Query: 214 TENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI- 272
E ++L V +V C A GNP P+I W K RI I
Sbjct: 125 PERMDK----------KLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIK 174
Query: 273 ----GSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDE 328
SL + V SD G + CV N G + + L + +
Sbjct: 175 LRHQQWSLVMESVVPSDRGNYTCVVENKFGSIR---------------QTYTLDVLERSP 219
Query: 329 KNKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIK 369
L + V C + P I+
Sbjct: 220 HRPILQA-----GLPANQTAVLGSDVEFHCKVYSDAQPHIQ 255
Score = 110 bits (276), Expect = 1e-27
Identities = 59/348 (16%), Positives = 98/348 (28%), Gaps = 100/348 (28%)
Query: 13 IEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN-----SDEVLVLDRVQ 67
E Q+V G +EL C W+KDG L + + L +
Sbjct: 10 PEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLVGPQRLQVLNAS 69
Query: 68 REDAGMYQCHVSADDDSAQMSAQVILGGELVEIASSNQ---------------------- 105
ED+G Y C + + +
Sbjct: 70 HEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMD 129
Query: 106 ---VVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLR----------RNSDEVLVLD 149
+ V + + C + P +S WLK+G R R+ LV++
Sbjct: 130 KKLLAVPAANTVRFRCPAAGNPTPSIS----WLKNGREFRGEHRIGGIKLRHQQWSLVME 185
Query: 150 RVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRG 209
V D G Y C +E+ G + ++Y L V
Sbjct: 186 SVVPSDRGNYTCVVEN------KFGSI----------RQTYT------------LDV--- 214
Query: 210 RLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDS-------- 261
L + ++ +L A + V C + P I+W K
Sbjct: 215 -LERSPHRPILQAGLPANQT----AVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGP 269
Query: 262 ---------PVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQD 300
++ + LS+ +V D+G + C+A NS G
Sbjct: 270 DGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFS 317
Score = 46.9 bits (111), Expect = 5e-06
Identities = 24/97 (24%), Positives = 31/97 (31%), Gaps = 29/97 (29%)
Query: 21 VVVDVGHRIELHCRVSPKRLSSAKA---WLKDGLVL----------------------RR 55
+G +E HC+V S A+ WLK V
Sbjct: 232 QTAVLGSDVEFHCKVY----SDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTD 287
Query: 56 NSDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVI 92
EVL L V EDAG Y C + SA ++
Sbjct: 288 KELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLV 324
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system;
HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Length = 262
Score = 118 bits (298), Expect = 2e-31
Identities = 48/293 (16%), Positives = 93/293 (31%), Gaps = 46/293 (15%)
Query: 13 IEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAG 72
I + P V + LHC V SS+ W +G + ++ + D+G
Sbjct: 4 ITLQPPWVSVF-QEETVTLHCEVLHLPGSSSTQWFLNGTATQTSTPS-YRITSASVNDSG 61
Query: 73 MYQCHVSADDDSAQMSAQVILGGELVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWL 132
Y+C S + ++ G L++++S V G + L C +L +
Sbjct: 62 EYRCQRGLSGRSDPIQLEIHRGWLLLQVSSR---VFTEGEPLALRCHAWKDKLVYNVLYY 118
Query: 133 KDGLVLR-RNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQ 191
++G + + + L + + G +Y
Sbjct: 119 RNGKAFKFFHWNSNLTILKTNISHNG-------------------------------TYH 147
Query: 192 CRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPL 251
C G+ K S ++ + L A + + + V L C +
Sbjct: 148 CSGMGKHRYTS--------AGISVTVKELFPAPVLNASVTSPLLEGNLVTLSCETKLLLQ 199
Query: 252 -PTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQ 303
P ++ Y ++ R + S I DSG++ C A +G +
Sbjct: 200 RPGLQLYFSFYMGSKTLRGRNTSSEYQILTARREDSGLYWCEAATEDGNVLKR 252
Score = 85.0 bits (210), Expect = 4e-19
Identities = 37/270 (13%), Positives = 72/270 (26%), Gaps = 77/270 (28%)
Query: 100 IASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMY 159
V V + LHC V SS+ W +G + ++ + D+G Y
Sbjct: 5 TLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTSTPS-YRITSASVNDSGEY 63
Query: 160 QCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRL 219
+C SD L ++RG L L + R+
Sbjct: 64 RCQRGLS---------------GRSD---------------PIQLEIHRGWLLLQVSSRV 93
Query: 220 LSAAKMFEKHRILNVKKDESVILPCSAQGN-PLPTIKWYKQDSPVEESDRIQRIGSSLSI 278
+ E + L C A + + + +Y+ + S+L+I
Sbjct: 94 --------------FTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFFHW----NSNLTI 135
Query: 279 SHVEESDSGVWNCVANNSEGQ--DKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSA 336
S +G ++C + + ++ + +S + +
Sbjct: 136 LKTNISHNGTYHCSGMGKHRYTSAGISVTVKELFPAPVLNASVTSPLLE----------- 184
Query: 337 AKMFEKHRILNVKKDESVILPCSAQGNPLP 366
V L C +
Sbjct: 185 --------------GNLVTLSCETKLLLQR 200
Score = 84.6 bits (209), Expect = 6e-19
Identities = 34/179 (18%), Positives = 63/179 (35%), Gaps = 12/179 (6%)
Query: 10 SLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLR-RNSDEVLVLDRVQR 68
L +++S V G + L C +L + ++G + + + L + +
Sbjct: 84 WLLLQVSSR---VFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFFHWNSNLTILKTNI 140
Query: 69 EDAGMYQCHV--SADDDSAQMSAQVILGGELVEIASSNQVVVDVGHRIELHCRVSPKRLS 126
G Y C SA +S V + +S + G+ + L C
Sbjct: 141 SHNGTYHCSGMGKHRYTSAGISVTVKELFPAPVLNASVTSPLLEGNLVTLSCETKLLLQR 200
Query: 127 SA----KAWLKDGLVLR-RNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLS-SGELIIH 179
++ LR RN+ + +RED+G+Y C ++L S EL +
Sbjct: 201 PGLQLYFSFYMGSKTLRGRNTSSEYQILTARREDSGLYWCEAATEDGNVLKRSPELELQ 259
Score = 61.9 bits (150), Expect = 4e-11
Identities = 26/141 (18%), Positives = 47/141 (33%), Gaps = 36/141 (25%)
Query: 233 NVKKDESVILPCSAQGNPLP-TIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNC 291
+V ++E+V L C P + +W+ + + S S I+ +DSG + C
Sbjct: 12 SVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTST------PSYRITSASVNDSGEYRC 65
Query: 292 VANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKD 351
S D +QL I ++ QV + +
Sbjct: 66 QRGLSGRSDPIQLEIHRGW-----------LLLQVSSR-----------------VFTEG 97
Query: 352 ESVILPCSAQGN-PLPTIKYR 371
E + L C A + + + Y
Sbjct: 98 EPLALRCHAWKDKLVYNVLYY 118
Score = 46.4 bits (110), Expect = 4e-06
Identities = 16/81 (19%), Positives = 30/81 (37%), Gaps = 6/81 (7%)
Query: 5 IQVKSSLSI-EMSPSGQVVVDVGHRIELHCRVSPKRLSSA----KAWLKDGLVLR-RNSD 58
+ VK ++ S + G+ + L C ++ LR RN+
Sbjct: 163 VTVKELFPAPVLNASVTSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGRNTS 222
Query: 59 EVLVLDRVQREDAGMYQCHVS 79
+ +RED+G+Y C +
Sbjct: 223 SEYQILTARREDSGLYWCEAA 243
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, CY receptor complex, extracellular
complex; HET: NAG; 4.30A {Homo sapiens}
Length = 423
Score = 119 bits (299), Expect = 2e-30
Identities = 49/376 (13%), Positives = 99/376 (26%), Gaps = 91/376 (24%)
Query: 16 SPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDE--------VLVLDRVQ 67
+ V VDV I L V S W+ L +V+ ++
Sbjct: 53 YEAAAVEVDVSASITLQVLVDAPGNISCL-WVFKHSSLNCQPHFDLQNRGVVSMVILKMT 111
Query: 68 REDAGMYQCHVSADDDSAQMSAQVILGGELVEIASSNQVVVDVGHRIELHCRVS--PK-R 124
AG Y + ++ + + V + L+ + ++ L C P+
Sbjct: 112 ETQAGEYLLFIQSEATNYTILFTVSIRNTLL-YTLRRPYFRKMENQDALVCISESVPEPI 170
Query: 125 LSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDES 184
+ W+ +E ++ E ++H++ +
Sbjct: 171 VE----WVLCDSQGESCKEE----------------------SPAVVKKEEKVLHELFGT 204
Query: 185 DRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPC 244
D +C N+L GR T + L +K E + + C
Sbjct: 205 D----IRCCARNEL----------GR-ECTRLFTIDLNQTPQTTLPQLFLKVGEPLWIRC 249
Query: 245 SA-QGNPLPTIKWYKQDSPVEESDRIQRIG----------SSLSISHVEESDSGVWNCVA 293
A N + W ++ +EE + + +S V +D+G + C +
Sbjct: 250 KAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSS 309
Query: 294 NNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKDES 353
+ S + I + N + + E
Sbjct: 310 SKHPS------------------QSALVTIVEKGFINAT--------NSSEDYEIDQYEE 343
Query: 354 VILPCSAQGNPLPTIK 369
+ P
Sbjct: 344 FCFSVRFKAYPQIRCT 359
Score = 115 bits (290), Expect = 4e-29
Identities = 37/327 (11%), Positives = 90/327 (27%), Gaps = 49/327 (14%)
Query: 2 QLFIQVKSSLSIEMSPSGQVVVDVGHRIELHCRVS--PK-RLSSAKAWLKDG---LVLRR 55
+ ++++L + + ++ L C P+ + W+ +
Sbjct: 132 LFTVSIRNTLLYTLRRPYFRKM--ENQDALVCISESVPEPIVE----WVLCDSQGESCKE 185
Query: 56 NSDEVLVLD--RVQREDAGMYQCHVSADDDSAQMSAQVILGGELVEIASSNQVVVDVGHR 113
S V+ + + +C + I + + + Q+ + VG
Sbjct: 186 ESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTIDLNQTPQT-TLPQLFLKVGEP 244
Query: 114 IELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSS 173
+ + C+ W + L + ++ M+
Sbjct: 245 LWIRCKAVHVNHGFGLTWELENKALEEGNY---------------FEMSTYSTNRTMIRI 289
Query: 174 GELIIHQVDESDRYRSYQCRGVNKLTGASLLSV-NRGRLSLTENKRLLSAAKMFEKHRIL 232
+ V +D Y C + ++L+++ +G ++ T +
Sbjct: 290 LFAFVSSVARNDT-GYYTCSSSKHPSQSALVTIVEKGFINATNSSEDYE----------- 337
Query: 233 NVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCV 292
+ + E + P W + G S+S + G +
Sbjct: 338 -IDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNGYSISKFCNHKHQPGEYIFH 396
Query: 293 ANNSEGQD--KMQLFIQYA---HGKYH 314
A N + Q L I+ H +H
Sbjct: 397 AENDDAQFTKMFTLNIRSGTKHHHHHH 423
Score = 95.9 bits (238), Expect = 5e-22
Identities = 25/226 (11%), Positives = 58/226 (25%), Gaps = 58/226 (25%)
Query: 151 VQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRS--YQCRGVNKLTGASLLSVNR 208
+D + +C LI H+ ++S +S Y + L
Sbjct: 2 TGNQDLPVIKC-------------VLINHKNNDSSVGKSSSYPMVSESPEDLGCALRPQ- 47
Query: 209 GRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDR 268
++ + + V S+ L + W + S +
Sbjct: 48 -------------SSGTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPH 94
Query: 269 IQ---RIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQ 325
R S+ I + E+ +G + + + +
Sbjct: 95 FDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVS------------------ 136
Query: 326 VDEKNKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKYR 371
+ ++ R K + L C ++ P P +++
Sbjct: 137 --------IRNTLLYTLRRPYFRKMENQDALVCISESVPEPIVEWV 174
Score = 91.7 bits (227), Expect = 1e-20
Identities = 42/306 (13%), Positives = 74/306 (24%), Gaps = 68/306 (22%)
Query: 66 VQREDAGMYQCHVSADDDSAQMSAQVILGGELVEIASSNQ-VVVDVGHRIELHCRVSPKR 124
+ Y + +D L + V VDV I L V
Sbjct: 22 SSVGKSSSYPMVSESPEDLG-----CALRPQSSGTVYEAAAVEVDVSASITLQVLVDAPG 76
Query: 125 LSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDES 184
S W+ L ++I ++ E+
Sbjct: 77 NISCL-WVFKHSSLNCQ----------------------PHFDLQNRGVVSMVILKMTET 113
Query: 185 DRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPC 244
Y ++ T ++ +++ LL + R K + L C
Sbjct: 114 QA-GEYLLFIQSEATNYTI------LFTVSIRNTLL-----YTLRRPYFRKMENQDALVC 161
Query: 245 SAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQL 304
++ P P ++W DS E + E C A N G++ +L
Sbjct: 162 ISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRL 221
Query: 305 FIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKDESVILPCSA-QGN 363
F + L +K E + + C A N
Sbjct: 222 FT--------------------------IDLNQTPQTTLPQLFLKVGEPLWIRCKAVHVN 255
Query: 364 PLPTIK 369
+
Sbjct: 256 HGFGLT 261
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor
tyrosine kinase, class III, recep ligand complex,
cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A
{Mus musculus}
Length = 290
Score = 112 bits (282), Expect = 6e-29
Identities = 40/307 (13%), Positives = 89/307 (28%), Gaps = 52/307 (16%)
Query: 20 QVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDE--VLVLDRVQREDAGMYQCH 77
+++V+ G + L C W ++ + ++ + G Y C
Sbjct: 21 ELIVEAGDTLSLTCIDPDF-----VRWTFKTYFNEMVENKKNEWIQEKAEATRTGTYTCS 75
Query: 78 VSADDDSAQMSAQVILGGELVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLV 137
S + S V + + + C ++ ++S DG
Sbjct: 76 NS---NGLTSSIYVFVRDPAKLFLVGLPLFGKEDSDALVRCPLTDPQVSQYSLIECDGKS 132
Query: 138 LRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNK 197
L D + + I V + +C
Sbjct: 133 LP------------------------TDLTFVPNPKAGITIKNVKRAYHRLCVRCAAQRD 168
Query: 198 LTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLP-TIKW 256
T ++ + +L + + + + +KK ++ + C+ + W
Sbjct: 169 GT-----WLHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMW 223
Query: 257 YKQDSPVEESDRIQR-----------IGSSLSISHVEESDSGVWNCVANNSEGQDKMQLF 305
K + + +++ +L+IS DSGV+ C ANN+ G +
Sbjct: 224 LKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTT 283
Query: 306 IQ-YAHG 311
++ G
Sbjct: 284 LKVVEKG 290
Score = 82.1 bits (202), Expect = 6e-18
Identities = 27/270 (10%), Positives = 61/270 (22%), Gaps = 74/270 (27%)
Query: 102 SSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDE--VLVLDRVQREDAGMY 159
+ ++++V+ G + L C W ++ + ++ + G Y
Sbjct: 18 AQSELIVEAGDTLSLTCIDPDF-----VRWTFKTYFNEMVENKKNEWIQEKAEATRTGTY 72
Query: 160 QCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRL 219
C N LT + + V
Sbjct: 73 TCSNS-------------------------------NGLTSSIYVFVR------------ 89
Query: 220 LSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI---GSSL 276
AK+F L K+D ++ C + + D +D
Sbjct: 90 -DPAKLFLVGLPLFGKEDSDALVRCPLTDPQVSQYSLIECDGKSLPTDLTFVPNPKAGIT 148
Query: 277 SISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSA 336
+ C A S + + + +
Sbjct: 149 IKNVKRAYHRLCVRCAAQRDGTWLH----------------SDKFTLKVREAIK----AI 188
Query: 337 AKMFEKHRILNVKKDESVILPCSAQGNPLP 366
+ +KK ++ + C+ +
Sbjct: 189 PVVSVPETSHLLKKGDTFTVVCTIKDVSTS 218
Score = 71.3 bits (174), Expect = 4e-14
Identities = 24/205 (11%), Positives = 62/205 (30%), Gaps = 31/205 (15%)
Query: 3 LFIQVKSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEV-- 60
+F++ + L + P + + C ++ ++S DG L + V
Sbjct: 86 VFVRDPAKLFLVGLP---LFGKEDSDALVRCPLTDPQVSQYSLIECDGKSLPTDLTFVPN 142
Query: 61 -----LVLDRVQREDAGMYQCHVSADD---DSAQMSAQVILGGELVEI--ASSNQVVVDV 110
+ + + +C D S + + +V + + + ++
Sbjct: 143 PKAGITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKK 202
Query: 111 GHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDE----------------VLVLDRVQRE 154
G + C + S WLK + + L + + +
Sbjct: 203 GDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVD 262
Query: 155 DAGMYQCHIEDGKYHMLSSGELIIH 179
D+G++ C+ + + L +
Sbjct: 263 DSGVFMCYANNTFGSANVTTTLKVV 287
Score = 63.6 bits (154), Expect = 1e-11
Identities = 19/140 (13%), Positives = 39/140 (27%), Gaps = 35/140 (25%)
Query: 232 LNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNC 291
L V+ +++ L C ++W + E + + E + +G + C
Sbjct: 22 LIVEAGDTLSLTCIDPD----FVRWTFKTYFNEMVENK---KNEWIQEKAEATRTGTYTC 74
Query: 292 VANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKD 351
+N SS + + AK+F L K+D
Sbjct: 75 SNSNGLT------------------SSIYVFVR----------DPAKLFLVGLPLFGKED 106
Query: 352 ESVILPCSAQGNPLPTIKYR 371
++ C +
Sbjct: 107 SDALVRCPLTDPQVSQYSLI 126
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer,
immunoglobul domain, muscle protein, thick filament,
contractIle protein; 2.24A {Homo sapiens}
Length = 212
Score = 110 bits (276), Expect = 9e-29
Identities = 35/227 (15%), Positives = 75/227 (33%), Gaps = 34/227 (14%)
Query: 95 GELVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDG---------LVLRRNSDEV 145
G + +++++ + I+L+ V+ W +G
Sbjct: 1 GSSIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIW 60
Query: 146 LVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLS 205
L ++ D G Y + DGK + +L DE+
Sbjct: 61 LQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAY-------------------- 100
Query: 206 VNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEE 265
RL A + ++ +++ +++ L C+ G+P P + W K + + +
Sbjct: 101 AEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQ 160
Query: 266 SDRIQRI-----GSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQ 307
+D + +I+ V +DSG + V N G + +
Sbjct: 161 TDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVS 207
Score = 88.8 bits (220), Expect = 7e-21
Identities = 21/138 (15%), Positives = 49/138 (35%), Gaps = 11/138 (7%)
Query: 238 ESVILPCS-AQGNPLPTIKWYKQDSPVEESDRIQRI----GSSLSISHVEESDSGVWNCV 292
E + L + W S + SDR++ L I+ +D G +
Sbjct: 18 EGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVME 77
Query: 293 ANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKH-RILNVKKD 351
+ + + + + L + EKN+ A++ ++ +++
Sbjct: 78 LFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNR-----ARVLGGLPDVVTIQEG 132
Query: 352 ESVILPCSAQGNPLPTIK 369
+++ L C+ G+P P +
Sbjct: 133 KALNLTCNVWGDPPPEVS 150
Score = 67.6 bits (165), Expect = 2e-13
Identities = 26/198 (13%), Positives = 48/198 (24%), Gaps = 56/198 (28%)
Query: 19 GQVVVDVGHRIELHCRVSPKRLSSAKA---------WLKDG---------LVLRRNSDEV 60
G + +++ +L S W +G
Sbjct: 1 GSSIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIW 60
Query: 61 LVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGELVEIASSNQ--------------- 105
L ++ D G Y + Q + + A +
Sbjct: 61 LQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVL 120
Query: 106 ------VVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRNSDE----------VL 146
V + G + L C V P +S WLK+ L +
Sbjct: 121 GGLPDVVTIQEGKALNLTCNVWGDPPPEVS----WLKNEKALAQTDHCNLKFEAGRTAYF 176
Query: 147 VLDRVQREDAGMYQCHIE 164
++ V D+G Y ++
Sbjct: 177 TINGVSTADSGKYGLVVK 194
Score = 45.6 bits (108), Expect = 7e-06
Identities = 18/85 (21%), Positives = 26/85 (30%), Gaps = 17/85 (20%)
Query: 21 VVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRNSDE----------VLVLDRVQ 67
V + G + L C V P +S WLK+ L + ++ V
Sbjct: 127 VTIQEGKALNLTCNVWGDPPPEVS----WLKNEKALAQTDHCNLKFEAGRTAYFTINGVS 182
Query: 68 REDAGMYQCHVSADDDSAQMSAQVI 92
D+G Y V S V
Sbjct: 183 TADSGKYGLVVKNKYGSETSDFTVS 207
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein
complex, growth factor-receptor complex, TRA hormone
complex; HET: NDG NAG; 2.30A {Homo sapiens}
Length = 289
Score = 112 bits (280), Expect = 1e-28
Identities = 53/334 (15%), Positives = 93/334 (27%), Gaps = 77/334 (23%)
Query: 13 IEMSPSG-QVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDE--------VLVL 63
+ ++P G ++V++V L C S + W + + + VL L
Sbjct: 1 LVVTPPGPELVLNVSSTFVLTCSGSAP-VV----WERMSQEPPQEMAKAQDGTFSSVLTL 55
Query: 64 DRVQREDAGMYQCHVS-----ADDDSAQMSAQVILGGELVEIASSNQVVVDV--GHRIEL 116
+ D G Y C + D+ ++ V + ++ + + I +
Sbjct: 56 TNLTGLDTGEYFCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITI 115
Query: 117 HCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGEL 176
CRV+ +L + + + Y C G + S
Sbjct: 116 PCRVTDPQLVV--TLHEKKGDVALPVPYDHQRGFSGIFEDRSYICKTTIGDREVDSDAYY 173
Query: 177 IIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKK 236
+ S +N A V +G
Sbjct: 174 VYRLQVSS----------INVSVNAVQTVVRQG--------------------------- 196
Query: 237 DESVILPCSAQGNPLPTIKWYKQDSPVE---------ESDRIQRIGSSLSISHVEESDSG 287
E++ L C GN + +W D I S L I E DSG
Sbjct: 197 -ENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSG 255
Query: 288 VWNCVANNSEG--QDKMQLFIQ-----YAHGKYH 314
+ C S QD+ + I + H +H
Sbjct: 256 TYTCNVTESVNDHQDEKAINITVVESGHHHHHHH 289
Score = 80.1 bits (197), Expect = 3e-17
Identities = 28/276 (10%), Positives = 69/276 (25%), Gaps = 75/276 (27%)
Query: 102 SSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDE--------VLVLDRVQR 153
++V++V L C S + W + + + VL L +
Sbjct: 6 PGPELVLNVSSTFVLTCSGSAP-VV----WERMSQEPPQEMAKAQDGTFSSVLTLTNLTG 60
Query: 154 EDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSL 213
D G Y C D + + + V +
Sbjct: 61 LDTGEYFCTHNDSRGLETDERKRLYIFVPDPTV--------------------------- 93
Query: 214 TENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIG 273
+ + + + + +PC P + +++ V +
Sbjct: 94 -------GFLPNDAEELFIFLTEITEITIPCRVTD-PQLVVTLHEKKGDVA-----LPVP 140
Query: 274 SSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRL 333
+ + C + + + S ++++
Sbjct: 141 YDHQRGFSGIFEDRSYICKTTIGDRE----------------VDSDAYYVYRLQV----- 179
Query: 334 LSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIK 369
S+ + V++ E++ L C GN + +
Sbjct: 180 -SSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFE 214
Score = 62.8 bits (152), Expect = 3e-11
Identities = 28/179 (15%), Positives = 51/179 (28%), Gaps = 23/179 (12%)
Query: 3 LFIQVKSSLSIEMSPSGQVV-VDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVL 61
+F+ + + + + I + CRV+ +L + +
Sbjct: 86 IFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVTDPQLVVT--LHEKKGDVALPVPYDH 143
Query: 62 VLDRVQREDAGMYQCHVSADD---DSAQMSAQVILGGELVEIASSNQVVVDVGHRIELHC 118
+ Y C + D DS + + ++ Q VV G I L C
Sbjct: 144 QRGFSGIFEDRSYICKTTIGDREVDSDAYYVYRLQVSSINVSVNAVQTVVRQGENITLMC 203
Query: 119 RVS---------------PKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCH 162
V RL + S +L + + ED+G Y C+
Sbjct: 204 IVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRS--ILHIPSAELEDSGTYTCN 260
Score = 46.2 bits (109), Expect = 8e-06
Identities = 21/108 (19%), Positives = 38/108 (35%), Gaps = 18/108 (16%)
Query: 1 MQLFIQVKSSLSIEMSPSGQVVVDVGHRIELHCRVS---------------PKRLSSAKA 45
++ SS+++ ++ Q VV G I L C V RL
Sbjct: 172 YYVYRLQVSSINVSVNAV-QTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVT 230
Query: 46 WLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVIL 93
+ S +L + + ED+G Y C+V+ + Q + +
Sbjct: 231 DFLLDMPYHIRS--ILHIPSAELEDSGTYTCNVTESVNDHQDEKAINI 276
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane,
glycoprotein, signal, complex (immunoglobulin/receptor);
2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB:
1ira_Y* 4dep_B* 1g0y_R
Length = 315
Score = 112 bits (281), Expect = 1e-28
Identities = 49/322 (15%), Positives = 83/322 (25%), Gaps = 60/322 (18%)
Query: 14 EMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDE---------VLVLD 64
E +V C ++P W KD ++++ L
Sbjct: 8 EREEKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFV 67
Query: 65 RVQREDAGMYQCHVSADDDSAQMSAQV-ILGGELVEIASSNQV---VVDVGHRIELHCRV 120
+ ED+G Y C V ++ + E ++ + + V L C
Sbjct: 68 PAKVEDSGHYYCVVRNSSYCLRIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPY 127
Query: 121 SPKRLSSAK-----AWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGE 175
+ W KD L D +
Sbjct: 128 MEFFKNENNELPKLQWYKDCKPLL------------------------LDNIHFSGVKDR 163
Query: 176 LIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVK 235
LI+ V E R Y C G E + + + + V
Sbjct: 164 LIVMNVAEKHRGN-YTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEVD 222
Query: 236 KDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQR----------------IGSSLSIS 279
+ L C+ G W S ++E D + + + L+IS
Sbjct: 223 LGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNIS 282
Query: 280 HVEESD-SGVWNCVANNSEGQD 300
+E + C A N+ G D
Sbjct: 283 EIESRFYKHPFTCFAKNTHGID 304
Score = 102 bits (254), Expect = 9e-25
Identities = 39/288 (13%), Positives = 79/288 (27%), Gaps = 68/288 (23%)
Query: 98 VEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDE---------VLVL 148
E +V C ++P W KD ++++ L
Sbjct: 7 KEREEKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWF 66
Query: 149 DRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNR 208
+ ED+G Y C + + Y + + + + Y +
Sbjct: 67 VPAKVEDSGHYYCVVRNSSYCLRIKISAKFVENEPNLCYNAQA----------------- 109
Query: 209 GRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCS------AQGNPLPTIKWYKQDSP 262
+ L V L C + N LP ++WYK P
Sbjct: 110 ------------------IFKQKLPVAG--DGGLVCPYMEFFKNENNELPKLQWYKDCKP 149
Query: 263 VEESDRIQRI-GSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGEL 321
+ + L + +V E G + C A+ + + Y + E
Sbjct: 150 LLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQ-----------YPITRVIEF 198
Query: 322 IIHQVDEKNKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIK 369
I + ++ + ++ + + + V + L C+ G
Sbjct: 199 ITLEENKPTRPVI----VSPANETMEVDLGSQIQLICNVTGQLSDIAY 242
Score = 40.9 bits (95), Expect = 5e-04
Identities = 16/107 (14%), Positives = 30/107 (28%), Gaps = 31/107 (28%)
Query: 13 IEMSPSGQVVVDVGHRIELHCRVS----PKRLSSAKAWLKDGLVLRRN------------ 56
I + + VD+G +I+L C V+ W +G V+ +
Sbjct: 211 IVSPANETMEVDLGSQIQLICNVTGQLSDIAY-----WKWNGSVIDEDDPVLGEDYYSVE 265
Query: 57 ---------SDEVLVLDRVQRED-AGMYQCHVSADDDSAQMSAQVIL 93
VL + ++ + C Q+I
Sbjct: 266 NPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIY 312
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain,
cytokine decoy RE virus/viral protein, type-1
interferon, soluble A/B-IFNR; HET: EPE; 2.10A
{Ectromelia virus}
Length = 329
Score = 112 bits (281), Expect = 1e-28
Identities = 54/326 (16%), Positives = 91/326 (27%), Gaps = 56/326 (17%)
Query: 12 SIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKA--------WLKDGLVL----RRNSDE 59
S + + +G C L S + W K G RR +
Sbjct: 30 SCMFGGTMNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRRVKNG 89
Query: 60 VLVLDRVQREDAG-MYQCHVS-ADDDSAQMSAQVILGGELVEIASSNQVVVDVGHRIELH 117
L + D+ Y C V+ + D Q + + I + ++ + I+L+
Sbjct: 90 DLWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRKPPSCIPETYELGTHDKYGIDLY 149
Query: 118 CRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELI 177
C + + + W K+ L DG + S LI
Sbjct: 150 CGILYAKHYNNITWYKNNQELI------------------------IDGTKYSQSGQNLI 185
Query: 178 IHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKD 237
IH + D Y C V LT K+ +I NV
Sbjct: 186 IHNPELEDS-GRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDPKI-NVTIG 243
Query: 238 ESVILPCSAQGNPLP----TIKWYKQDSPVEESD---------RIQRIGSSLSISHVEES 284
E + C+A L I W + D ++L +V E
Sbjct: 244 EPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEE 303
Query: 285 DSG-VWNCVANNSEGQDKM--QLFIQ 307
G + C +N + + ++
Sbjct: 304 YIGNTYTCRGHNYYFDKTLTTTVVLE 329
Score = 94.9 bits (235), Expect = 3e-22
Identities = 40/263 (15%), Positives = 73/263 (27%), Gaps = 45/263 (17%)
Query: 106 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIED 165
+ +G C L S + KD +V + + ++
Sbjct: 39 DMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRRVKN---------- 88
Query: 166 GKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKM 225
G+L I +D +R Y C K V +
Sbjct: 89 --------GDLWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRS---------HIRKPPSC 131
Query: 226 FEKHRILNVKKDESVILPCS-AQGNPLPTIKWYKQDSPVEESD-RIQRIGSSLSISHVEE 283
+ L + L C I WYK + + + + G +L I + E
Sbjct: 132 IPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKYSQSGQNLIIHNPEL 191
Query: 284 SDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKH 343
DSG ++C + + + + L + + +L+ K+
Sbjct: 192 EDSGRYDCYVHYDDVR---------IKNDIVVSRCKILTVIPSQDHRFKLILDPKI---- 238
Query: 344 RILNVKKDESVILPCSAQGNPLP 366
NV E + C+A L
Sbjct: 239 ---NVTIGEPANITCTAVSTSLL 258
Score = 77.9 bits (191), Expect = 2e-16
Identities = 34/216 (15%), Positives = 64/216 (29%), Gaps = 35/216 (16%)
Query: 1 MQLFIQVKSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEV 60
+ ++ S ++ + I+L+C + + + W K+ L + +
Sbjct: 119 GIVRSHIRKPPSCIPETY-ELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKY 177
Query: 61 ------LVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGEL---------VEIASSNQ 105
L++ + ED+G Y C+V DD + V L ++ +
Sbjct: 178 SQSGQNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDPK 237
Query: 106 VVVDVGHRIELHCRVS--PKRLSSAK-AWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCH 162
+ V +G + C + W + D G+Y
Sbjct: 238 INVTIGEPANITCTAVSTSLLVDDVLIDWENPS-------------GWIIGLDFGVYSIL 284
Query: 163 IEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKL 198
G L V E +Y CRG N
Sbjct: 285 TSSGGIT---EATLYFENVTEEYIGNTYTCRGHNYY 317
Score = 56.0 bits (134), Expect = 6e-09
Identities = 20/166 (12%), Positives = 35/166 (21%), Gaps = 36/166 (21%)
Query: 215 ENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPL---------PTIKWYKQDSPVEE 265
++ + L+ + MF E C + L + W K
Sbjct: 22 KDSKWLNPSCMFGGTMNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRP 81
Query: 266 SDRIQRIGSSLSISHVEESDSG-VWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIH 324
+R + L I++ +DS + C G I
Sbjct: 82 LNRRVK-NGDLWIANYTSNDSHRRYLCTVTTKNGDCVQ--------------GIVRSHIR 126
Query: 325 QVDEKNKRLLSAAKMFEKHRILNVKKDESVILPCS-AQGNPLPTIK 369
+ L + L C I
Sbjct: 127 ----------KPPSCIPETYELGTHDKYGIDLYCGILYAKHYNNIT 162
Score = 27.5 bits (60), Expect = 8.0
Identities = 8/45 (17%), Positives = 16/45 (35%)
Query: 326 VDEKNKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKY 370
+ K+ + L+ + MF E C + L + +Y
Sbjct: 19 LPAKDSKWLNPSCMFGGTMNDMAALGEPFSAKCPPIEDSLLSHRY 63
>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus,
picornavirus, virus/receptor complex; 15.00A {Homo
sapiens} SCOP: i.6.1.1 PDB: 1dgi_R
Length = 302
Score = 110 bits (275), Expect = 6e-28
Identities = 51/322 (15%), Positives = 92/322 (28%), Gaps = 63/322 (19%)
Query: 20 QVVVDVGHRIELHCRVSPKRLSSAK----AWLKDG-----------------------LV 52
QV +G + L C + + W + G V
Sbjct: 9 QVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFV 68
Query: 53 LRRNSDEV----LVLDRVQREDAGMYQCHVSADDD-SAQMSAQVILGGELVEIASSNQVV 107
R E+ L + ++ ED G Y C S + + + + A +V
Sbjct: 69 AARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQ 128
Query: 108 VDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGK 167
+ C + R + W D + S L
Sbjct: 129 LTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGT---------------- 172
Query: 168 YHMLSSGELIIHQVDESDRYRSYQCRGVNK-LTGASLLSVNRGRLSLTENKRLLSAAKMF 226
+ + I+ + D ++ C+ ++ LL+V L++
Sbjct: 173 --VTVTSLWILVPSSQVDG-KNVTCKVEHESFEKPQLLTV---NLTV-----YYPPEVSI 221
Query: 227 EKHRILNVKKDESVILPCSAQGNPLPT-IKWYKQDSPVEESDRIQRIGSSLSISHVEESD 285
+ L C A+ NP PT W P+ Q G+ L I V++
Sbjct: 222 SGYDNNWYLGQNEATLTCDARSNPEPTGYNWSTTMGPLPPFAVAQ--GAQLLIRPVDKPI 279
Query: 286 SGVWNCVANNSEGQDKMQLFIQ 307
+ C N+ G + +L +Q
Sbjct: 280 NTTLICNVTNALGARQAELTVQ 301
Score = 90.2 bits (223), Expect = 1e-20
Identities = 36/279 (12%), Positives = 72/279 (25%), Gaps = 55/279 (19%)
Query: 105 QVVVDVGHRIELHCRVSPKRLSSAK----AWLKDGLVLRRNSDEVLVLDRVQREDAGMYQ 160
QV +G + L C + + W + G +
Sbjct: 9 QVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFV 68
Query: 161 CHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLL 220
+ + L + + D +Y C V G+ + L +L
Sbjct: 69 AARLGAELR---NASLRMFGLRVEDE-GNYTCLFVTFPQGSR-----SVDIWLR----VL 115
Query: 221 SAAKMFEKHRILNVKKDESVILPC-SAQGNPLPTIKWYKQDSPVEESDRIQR-------I 272
+ + + + + + + + C S G P I W+ + + ++ +
Sbjct: 116 AKPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTV 175
Query: 273 GSSLSISHVEESDSGVWNCVANNSEGQD----KMQLFIQYAHGKYHMLSSGELIIHQVDE 328
S + + D C + + + L + Y E+ I D
Sbjct: 176 TSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYP---------PEVSISGYDN 226
Query: 329 KNKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPT 367
L C A+ NP PT
Sbjct: 227 -----------------NWYLGQNEATLTCDARSNPEPT 248
Score = 72.8 bits (178), Expect = 1e-14
Identities = 21/164 (12%), Positives = 38/164 (23%), Gaps = 18/164 (10%)
Query: 17 PSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDE------------VLVLD 64
+V + C + R + W D + S + +L
Sbjct: 123 EVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWILV 182
Query: 65 RVQREDAGMYQCHVSADDDSAQMSAQVIL---GGELVEIASSNQVVVDVGHRIELHCRVS 121
+ D C V + V L V I+ + + L C
Sbjct: 183 PSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNEATLTCDAR 242
Query: 122 PKRLSSAKAWLKDGLVLRRN---SDEVLVLDRVQREDAGMYQCH 162
+ W L L++ V + C+
Sbjct: 243 SNPEPTGYNWSTTMGPLPPFAVAQGAQLLIRPVDKPINTTLICN 286
Score = 55.5 bits (133), Expect = 8e-09
Identities = 12/91 (13%), Positives = 23/91 (25%), Gaps = 3/91 (3%)
Query: 5 IQVKSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN---SDEVL 61
+ V + +S + L C + W L L
Sbjct: 211 LTVYYPPEVSISGYDNNWYLGQNEATLTCDARSNPEPTGYNWSTTMGPLPPFAVAQGAQL 270
Query: 62 VLDRVQREDAGMYQCHVSADDDSAQMSAQVI 92
++ V + C+V+ + Q V
Sbjct: 271 LIRPVDKPINTTLICNVTNALGARQAELTVQ 301
Score = 50.5 bits (120), Expect = 3e-07
Identities = 21/166 (12%), Positives = 42/166 (25%), Gaps = 52/166 (31%)
Query: 232 LNVKKDESVILPCSAQGNPLPT-----IKWYKQDSP-------------VEESDRIQRIG 273
+ +SV LPC Q + + W + ES R++ +
Sbjct: 10 VPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVA 69
Query: 274 S---------SLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIH 324
+ SL + + D G + C+ + L +
Sbjct: 70 ARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSV--------------DIWLRVL 115
Query: 325 QVDEKNKRLLSAAKMFEKHRILNVKKDESVILPC-SAQGNPLPTIK 369
+ + + + + + C S G P I
Sbjct: 116 AKPQNTAEVQK----------VQLTGEPVPMARCVSTGGRPPAQIT 151
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, membrane, glycoprote adhesion,
transmembrane; HET: NAG; 2.00A {Homo sapiens}
Length = 189
Score = 106 bits (266), Expect = 1e-27
Identities = 41/203 (20%), Positives = 76/203 (37%), Gaps = 42/203 (20%)
Query: 106 VVVDVGHRIELHCRVS--PKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHI 163
G E+ CRVS P S WL + SD
Sbjct: 12 QEFKQGEDAEVVCRVSSSPAPAVS---WLYHNEEVTTISD-------------------- 48
Query: 164 EDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAA 223
++ ML++ L I +++SD Y+C G + G +++
Sbjct: 49 --NRFAMLANNNLQILNINKSDEGI-YRCEGRVEARGEIDFRDII---------VIVNVP 96
Query: 224 KMFEKHRIL---NVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDR--IQRIGSSLSI 278
+ ++ E + C A G+P P I W++ +EE+++ ++ + L++
Sbjct: 97 PAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTV 156
Query: 279 SHVEESDSGVWNCVANNSEGQDK 301
++ SD G + C A N G+D+
Sbjct: 157 RNIINSDGGPYVCRATNKAGEDE 179
Score = 85.6 bits (212), Expect = 5e-20
Identities = 26/140 (18%), Positives = 49/140 (35%), Gaps = 24/140 (17%)
Query: 233 NVKKDESVILPCSAQGNPLPTIKWYKQDSPVEE--SDRIQRI-GSSLSISHVEESDSGVW 289
K+ E + C +P P + W + V +R + ++L I ++ +SD G++
Sbjct: 13 EFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIY 72
Query: 290 NCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVK 349
C + + ++I V A M +K +
Sbjct: 73 RCEGRVEARGE--------------IDFRDIIVIVNVPP-------AISMPQKSFNATAE 111
Query: 350 KDESVILPCSAQGNPLPTIK 369
+ E + C A G+P P I
Sbjct: 112 RGEEMTFSCRASGSPEPAIS 131
Score = 81.4 bits (201), Expect = 2e-18
Identities = 41/178 (23%), Positives = 63/178 (35%), Gaps = 32/178 (17%)
Query: 9 SSLSIEMSPSGQVVVDVGHRIELHCRVS--PKRLSSAKAWLKDGLVLRRNSDE------- 59
S L+ S Q G E+ CRVS P S WL + SD
Sbjct: 1 SMLTFREVVSPQEFK-QGEDAEVVCRVSSSPAPAVS---WLYHNEEVTTISDNRFAMLAN 56
Query: 60 -VLVLDRVQREDAGMYQC--HVSADDDSAQMSAQVILGG--ELVEIASSNQVVVDVGHRI 114
L + + + D G+Y+C V A + VI+ + S + G +
Sbjct: 57 NNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEM 116
Query: 115 ELHCRV--SPK-RLSSAKAWLKDGLVLRRN-------SDEVLVLDRVQREDAGMYQCH 162
CR SP+ +S W ++G ++ N S+ L + + D G Y C
Sbjct: 117 TFSCRASGSPEPAIS----WFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCR 170
Score = 51.7 bits (124), Expect = 5e-08
Identities = 18/101 (17%), Positives = 36/101 (35%), Gaps = 15/101 (14%)
Query: 2 QLFIQVKSSLSIEMSPSGQVVVDVGHRIELHCRV--SPK-RLSSAKAWLKDGLVLRRN-- 56
+ + V ++S+ G + CR SP+ +S W ++G ++ N
Sbjct: 90 IVIVNVPPAISMPQKSFNATAE-RGEEMTFSCRASGSPEPAIS----WFRNGKLIEENEK 144
Query: 57 -----SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVI 92
S+ L + + D G Y C + + A +
Sbjct: 145 YILKGSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQ 185
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex,
beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo
sapiens}
Length = 339
Score = 107 bits (269), Expect = 1e-26
Identities = 52/350 (14%), Positives = 108/350 (30%), Gaps = 67/350 (19%)
Query: 7 VKSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKA------WLKDGLVLRRNSDE- 59
+S + + G + L C P L ++ + W K+ +E
Sbjct: 15 ARSCRFRGRHYKREFRL-EGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEE 73
Query: 60 --------VLVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGELVEIAS--SNQVVVD 109
L L +ED+G Y C +MS ++ + S ++
Sbjct: 74 TRMWAQDGALWLLPALQEDSGTYVCTTRNASYCDKMSIELRVFENTDAFLPFISYPQILT 133
Query: 110 VGHRIELHCRVSPKRLSSAKA----WLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIED 165
+ L C + W KD L+L +++++ L +
Sbjct: 134 LSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRG--------------- 178
Query: 166 GKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKM 225
+ L++H V D Y+C ++ R + K+ + +
Sbjct: 179 -------TTHLLVHDVALEDAGY-YRCVLTFAH-EGQQYNITRSIELRIKKKKEETIPVI 229
Query: 226 FEKHRILNVKKDESVILPCSA---QGNPLPTIKWYKQD-SPVEESDRIQRI--------- 272
+ ++ + +PC G PL T+ W+ + + +E + R+
Sbjct: 230 ISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYS 289
Query: 273 -------GSSLSISHVEESDSGVW-NCVANNSEGQDKMQLFIQYAHGKYH 314
L V D + CV +N+ ++ ++ H +H
Sbjct: 290 ENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQTLRTTVKEHHHHHH 339
Score = 96.3 bits (239), Expect = 1e-22
Identities = 45/290 (15%), Positives = 86/290 (29%), Gaps = 72/290 (24%)
Query: 103 SNQVVVDVGHRIELHCRVSPKRLSSAKA------WLKDGLVLRRNSDE---------VLV 147
+ + G + L C P L ++ + W K+ +E L
Sbjct: 26 KREFRL-EGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMWAQDGALW 84
Query: 148 LDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVN 207
L +ED+G Y C + Y S EL + + ++ + + T L
Sbjct: 85 LLPALQEDSGTYVCTTRNASYCDKMSIELRVFENTDAFLPFISYPQILTLSTSGVL---- 140
Query: 208 RGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESD 267
L + I+WYK +++ +
Sbjct: 141 ------------------------------VCPDLSEFTRDKTDVKIQWYKDSLLLDKDN 170
Query: 268 RIQRI---GSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIH 324
+ L + V D+G + CV + +Y++ S EL I
Sbjct: 171 EKFLSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQ-----------QYNITRSIELRI- 218
Query: 325 QVDEKNKRLLSAAKMFEKHRILNVKKDESVILPCSA---QGNPLPTIKYR 371
K K+ + + + ++ + +PC G PL T+ +
Sbjct: 219 ----KKKKEETIPVIISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWW 264
Score = 71.6 bits (175), Expect = 4e-14
Identities = 36/222 (16%), Positives = 78/222 (35%), Gaps = 34/222 (15%)
Query: 1 MQLFIQVKSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKA----WLKDGLVLRRN 56
++L + + + Q++ + L C + W KD L+L ++
Sbjct: 111 IELRVFENTDAFLPFISYPQILT-LSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKD 169
Query: 57 S--------DEVLVLDRVQREDAGMYQCHVSADDDSAQMSA----QVILGGELVE----- 99
+ L++ V EDAG Y+C ++ + Q + ++ + + E
Sbjct: 170 NEKFLSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVI 229
Query: 100 IASSNQVVVDVGHRIELHCRVSPKRLS---SAKAWLKDGLVLRRNSDEVLVLDRVQREDA 156
I+ + +G R+ + C+V + + W + + R
Sbjct: 230 ISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGG-------RVTE 282
Query: 157 GMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKL 198
G Q + E+ + ++ LI V D + ++C N L
Sbjct: 283 GPRQEYSENNENYIEVP--LIFDPVTREDLHMDFKCVVHNTL 322
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Length = 305
Score = 107 bits (268), Expect = 1e-26
Identities = 40/209 (19%), Positives = 70/209 (33%), Gaps = 35/209 (16%)
Query: 106 VVVDVGHRIELHCRVS--PKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHI 163
+ V L C+V+ PK + W + G + + + + +
Sbjct: 14 LNVRYQSNATLVCKVTGHPKPIVK---WYRQGKEIIADGLKYRIQEFKGG---------- 60
Query: 164 EDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAA 223
+LII V + D YQ R N+ S L + ++
Sbjct: 61 ---------YHQLIIASVTDDDATV-YQVRATNQGGSVS----GTASLEVEVPAKI-HLP 105
Query: 224 KMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI-----GSSLSI 278
K E ++ + E V + G P P I W K ++ + Q I S +
Sbjct: 106 KTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFP 165
Query: 279 SHVEESDSGVWNCVANNSEGQDKMQLFIQ 307
+ VE D+G + A N G D+ + +
Sbjct: 166 NGVERKDAGFYVVCAKNRFGIDQKTVELD 194
Score = 93.7 bits (233), Expect = 7e-22
Identities = 31/144 (21%), Positives = 49/144 (34%), Gaps = 26/144 (18%)
Query: 232 LNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI------GSSLSISHVEESD 285
LNV+ + L C G+P P +KWY+Q + RI L I+ V + D
Sbjct: 14 LNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDD 73
Query: 286 SGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRI 345
+ V+ A N G + L + + + K E
Sbjct: 74 ATVYQVRATNQGGSVS---------------GTASLEV-----EVPAKIHLPKTLEGMGA 113
Query: 346 LNVKKDESVILPCSAQGNPLPTIK 369
++ + E V + G P P I
Sbjct: 114 VHALRGEVVSIKIPFSGKPDPVIT 137
Score = 74.4 bits (183), Expect = 3e-15
Identities = 31/186 (16%), Positives = 58/186 (31%), Gaps = 43/186 (23%)
Query: 12 SIEMSPSGQVVVDVGHRIELHCRVS--PKRLSSAKAWLKDGLVLRRNSDEV--------- 60
+ V L C+V+ PK + W + G + + +
Sbjct: 6 HFKEELRNLNVR-YQSNATLVCKVTGHPKPIVK---WYRQGKEIIADGLKYRIQEFKGGY 61
Query: 61 --LVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGELVEIA----------SSNQVVV 108
L++ V +DA +YQ + S +A + VE+ V
Sbjct: 62 HQLIIASVTDDDATVYQVRATNQGGSVSGTASLE-----VEVPAKIHLPKTLEGMGAVHA 116
Query: 109 DVGHRIELHCRVSPKRLSSAKAWLKDGLVLR----------RNSDEVLVLDRVQREDAGM 158
G + + S K W K ++ R+ ++ + V+R+DAG
Sbjct: 117 LRGEVVSIKIPFSGKPDPVIT-WQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGF 175
Query: 159 YQCHIE 164
Y +
Sbjct: 176 YVVCAK 181
Score = 53.6 bits (129), Expect = 3e-08
Identities = 16/103 (15%), Positives = 35/103 (33%), Gaps = 15/103 (14%)
Query: 4 FIQVKSSLSIEMSPSGQ----VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLR----- 54
++V+ I + + + V G + + S K W K ++
Sbjct: 93 SLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVIT-WQKGQDLIDNNGHY 151
Query: 55 -----RNSDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVI 92
R+ ++ + V+R+DAG Y Q + ++
Sbjct: 152 QVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELD 194
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural
plasticity, cell-surface dimerizatio adhesion; HET: NAG
FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4
PDB: 1p53_A*
Length = 265
Score = 105 bits (262), Expect = 2e-26
Identities = 43/304 (14%), Positives = 84/304 (27%), Gaps = 70/304 (23%)
Query: 22 VVDVGHRIELHCRVS---------------PKRLSSAKAWLKDGLVLRRNSDEVLVLDRV 66
V++V + + C + +RL+ + D S + V
Sbjct: 14 VLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSF-----SAKASVSVTA 68
Query: 67 QREDAGMYQCHVSADDDSAQMSAQVILGGELVEIASSNQVVVDVGHRIELHCRVSPKRLS 126
+ E C V + S + V + + V G + + C P+
Sbjct: 69 EDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEVSEGTEVTVKCEAHPRA-- 126
Query: 127 SAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDR 186
+G+ + +L + ED G
Sbjct: 127 ---KVTLNGVPAQPLGPRAQLLLKATPEDNG----------------------------- 154
Query: 187 YRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSA 246
RS+ C ++ G + L + RL + ++ C A
Sbjct: 155 -RSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDER----DCPGNWTWPENSQQTPMCQA 209
Query: 247 QGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQD--KMQL 304
GNPLP +K K + V G + C A +++G+ ++ +
Sbjct: 210 WGNPLPELKCLKDGTFPLPIGESVT---------VTRDLEGTYLCRARSTQGEVTREVTV 260
Query: 305 FIQY 308
+
Sbjct: 261 NVLS 264
Score = 69.3 bits (169), Expect = 1e-13
Identities = 27/165 (16%), Positives = 50/165 (30%), Gaps = 18/165 (10%)
Query: 5 IQVKSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLD 64
+ + S + + + V G + + C P+ +G+ + +L
Sbjct: 93 VTIYSFPAPNVILTKPEVS-EGTEVTVKCEAHPRA-----KVTLNGVPAQPLGPRAQLLL 146
Query: 65 RVQREDAGM-YQCHVSADDDSAQMSA------QVILGGELVEIASSNQVVVDVGHRIELH 117
+ ED G + C + + + +V+ G L E +
Sbjct: 147 KATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPM 206
Query: 118 CRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCH 162
C+ L K LKDG + V R+ G Y C
Sbjct: 207 CQAWGNPLPELK-CLKDG----TFPLPIGESVTVTRDLEGTYLCR 246
Score = 61.6 bits (149), Expect = 6e-11
Identities = 33/280 (11%), Positives = 60/280 (21%), Gaps = 88/280 (31%)
Query: 107 VVDVGHRIELHCRVS---------------PKRLSSAKAWLKDGLVLRRNSDEVLVLDRV 151
V++V + + C + +RL+ + D S + V
Sbjct: 14 VLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSF-----SAKASVSVTA 68
Query: 152 QREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRL 211
+ E C + G
Sbjct: 69 EDEGTQRLTCAVILGN-----------------------------------------QSQ 87
Query: 212 SLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQR 271
+ + S V + V + C A T+
Sbjct: 88 ETLQTVTIYSFPAPNVILTKPEVSEGTEVTVKCEAHPRAKVTLNGVPAQPLGP------- 140
Query: 272 IGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNK 331
+ L + E + ++C A QL + + +L L
Sbjct: 141 -RAQLLLKATPEDNGRSFSCSATLEVAG---QLIHKNQTRELRVLYGPRLDERDCPGN-- 194
Query: 332 RLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKYR 371
++ C A GNPLP +K
Sbjct: 195 --------------WTWPENSQQTPMCQAWGNPLPELKCL 220
Score = 47.4 bits (112), Expect = 2e-06
Identities = 16/91 (17%), Positives = 23/91 (25%), Gaps = 6/91 (6%)
Query: 2 QLFIQVKSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVL 61
+L + L P + C+ L K LKDG +
Sbjct: 177 ELRVLYGPRLDERDCPGNWTWP-ENSQQTPMCQAWGNPLPELK-CLKDG----TFPLPIG 230
Query: 62 VLDRVQREDAGMYQCHVSADDDSAQMSAQVI 92
V R+ G Y C + V
Sbjct: 231 ESVTVTRDLEGTYLCRARSTQGEVTREVTVN 261
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1,
isoform 2; hydrolase, immunoglobulin domain, nucleus,
protease; 2.80A {Homo sapiens}
Length = 218
Score = 101 bits (254), Expect = 1e-25
Identities = 33/198 (16%), Positives = 63/198 (31%), Gaps = 41/198 (20%)
Query: 106 VVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCH 162
V G ++L CR + P + W K + + L+ + V +DAG Y C
Sbjct: 28 KAVLAGQFVKLCCRATGHPFVQYQ----WFKMNKEIPNGNTSELIFNAVHVKDAGFYVCR 83
Query: 163 IEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSA 222
+ + + L V S + +S
Sbjct: 84 VNN------NFTFEFSQWSQ---------------------LDVCDIPESFQRSVDGVSE 116
Query: 223 AK-MFEKH-RILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISH 280
+K + +++L C A G+P+P +W+K + P+ + + +
Sbjct: 117 SKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETK-----KLYMVPY 171
Query: 281 VEESDSGVWNCVANNSEG 298
V+ G + C N
Sbjct: 172 VDLEHQGTYWCHVYNDRD 189
Score = 99.6 bits (248), Expect = 8e-25
Identities = 36/180 (20%), Positives = 61/180 (33%), Gaps = 31/180 (17%)
Query: 7 VKSSLSIEMSPSGQVVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRNSDEVLVL 63
V I ++P + V+ G ++L CR + P + W K + + L+
Sbjct: 15 VPRGSKITVNPESKAVL-AGQFVKLCCRATGHPFVQYQ----WFKMNKEIPNGNTSELIF 69
Query: 64 DRVQREDAGMYQC----------------HVSADDDSAQMSAQVILGGELVEIASSNQVV 107
+ V +DAG Y C V +S Q S + +L
Sbjct: 70 NAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQK 129
Query: 108 VDVGHRIELHCRVS---PKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIE 164
+ G + L C W K+ L L + ++ ++ V E G Y CH+
Sbjct: 130 LMPGSTLVLQCVAVGSPIPHYQ----WFKNELPLTHETKKLYMVPYVDLEHQGTYWCHVY 185
Score = 95.3 bits (237), Expect = 3e-23
Identities = 27/141 (19%), Positives = 51/141 (36%), Gaps = 20/141 (14%)
Query: 232 LNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNC 291
V + V L C A G+P +W+K + + + S L + V D+G + C
Sbjct: 28 KAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGN-----TSELIFNAVHVKDAGFYVC 82
Query: 292 VANNSEGQDKM---QLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNV 348
NN+ + QL + + G S ++ + +
Sbjct: 83 RVNNNFTFEFSQWSQLDVCDIPESFQRSVDGV------------SESKLQICVEPTSQKL 130
Query: 349 KKDESVILPCSAQGNPLPTIK 369
+++L C A G+P+P +
Sbjct: 131 MPGSTLVLQCVAVGSPIPHYQ 151
Score = 60.7 bits (147), Expect = 6e-11
Identities = 26/105 (24%), Positives = 41/105 (39%), Gaps = 9/105 (8%)
Query: 8 KSSLSIEMSPSGQVVVDVGHRIELHCRVS---PKRLSSAKAWLKDGLVLRRNSDEVLVLD 64
+S L I + P+ Q ++ G + L C W K+ L L + ++ ++
Sbjct: 116 ESKLQICVEPTSQKLM-PGSTLVLQCVAVGSPIPHYQ----WFKNELPLTHETKKLYMVP 170
Query: 65 RVQREDAGMYQCHVSADDDSAQMSAQVILGGELVEIAS-SNQVVV 108
V E G Y CHV D DS I+ EL + N+
Sbjct: 171 YVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELNNLGHPDNKEQT 215
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane,
phosphorylation, immunoglobulin domain, membrane,
glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB: 2xy1_A*
Length = 192
Score = 101 bits (252), Expect = 1e-25
Identities = 28/140 (20%), Positives = 53/140 (37%), Gaps = 28/140 (20%)
Query: 232 LNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI--GSSLSISHVEESDSGVW 289
++ E + C A G+P P I W++ +EE+++ + L++ ++ SD G +
Sbjct: 14 ATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPY 73
Query: 290 NCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVK 349
C A N G+D+ L + + +
Sbjct: 74 VCRATNKAGEDE---------------KQAFLQVF-----------VQPHIIQLKNETTY 107
Query: 350 KDESVILPCSAQGNPLPTIK 369
++ V L C A+G P+P I
Sbjct: 108 ENGQVTLVCDAEGEPIPEIT 127
Score = 93.7 bits (233), Expect = 6e-23
Identities = 40/225 (17%), Positives = 70/225 (31%), Gaps = 69/225 (30%)
Query: 106 VVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRN-------SDEVLVLDRVQRED 155
+ G + CR S P+ +S W ++G ++ N S+ L + + D
Sbjct: 14 ATAERGEEMTFSCRASGSPEPAIS----WFRNGKLIEENEKYILKGSNTELTVRNIINSD 69
Query: 156 AGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTE 215
G Y C + L +
Sbjct: 70 GGPYVCRATNKAGEDEKQAFLQVF------------------------------------ 93
Query: 216 NKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIG-- 273
+ + ++ V L C A+G P+P I W + ++ + +
Sbjct: 94 ------VQPHIIQLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGR 147
Query: 274 ---------SSLSISHVEESDSGVWNCVANNSEGQDK--MQLFIQ 307
SSL I V+ SDSG ++C A + G + M L I+
Sbjct: 148 IEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIE 192
Score = 79.5 bits (196), Expect = 1e-17
Identities = 33/183 (18%), Positives = 64/183 (34%), Gaps = 43/183 (23%)
Query: 10 SLSIEMSPSGQVVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRN-------SDE 59
++S+ + G + CR S P+ +S W ++G ++ N S+
Sbjct: 4 AISMPQKSF-NATAERGEEMTFSCRASGSPEPAIS----WFRNGKLIEENEKYILKGSNT 58
Query: 60 VLVLDRVQREDAGMYQCHVS--ADDDSAQMSAQVILGGELVEIASSNQVVVDVGHRIELH 117
L + + D G Y C + A +D Q QV + +++ N+ ++ L
Sbjct: 59 ELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQPHIIQ--LKNETTY-ENGQVTLV 115
Query: 118 CRVS--PK-RLSSAKAWLKDG----------------LVLRRNSDEVLVLDRVQREDAGM 158
C P ++ W + V ++ L + V+ D+G
Sbjct: 116 CDAEGEPIPEIT----WKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGR 171
Query: 159 YQC 161
Y C
Sbjct: 172 YDC 174
Score = 42.1 bits (99), Expect = 7e-05
Identities = 18/110 (16%), Positives = 33/110 (30%), Gaps = 25/110 (22%)
Query: 2 QLFIQVKSSLSIEMSPSGQVVVDVGHRIELHCRVS--PK-RLSSAKAWLKDG-------- 50
Q F+QV I + ++ L C P ++ W +
Sbjct: 87 QAFLQVFVQPHIIQLKNETTYE--NGQVTLVCDAEGEPIPEIT----WKRAVDGFTFTEG 140
Query: 51 --------LVLRRNSDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVI 92
V ++ L + V+ D+G Y C ++ Q S +
Sbjct: 141 DKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLD 190
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila
melanogaster} PDB: 3pxj_A
Length = 212
Score = 101 bits (254), Expect = 1e-25
Identities = 42/202 (20%), Positives = 69/202 (34%), Gaps = 37/202 (18%)
Query: 106 VVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCH 162
V VG +C P + W K+G + VL
Sbjct: 16 QGVRVGGVASFYCAARGDPPPSIV----WRKNGKKVSGTQSRYTVL-------------- 57
Query: 163 IEDGKYHMLSSGELIIHQVDESDRYR---SYQCRGVNKLTGASLLSVNRGRLSLTENKRL 219
G + I +++ R Y+C N + A L++ E +
Sbjct: 58 --------EQPGGISILRIEPVRAGRDDAPYECVAENGVGDAVSADA---TLTIYEGDKT 106
Query: 220 LSAAKMFEKH-RILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGS-SLS 277
+ + + ++ +V++ C A GNP P I W K + V+ S+ + L
Sbjct: 107 PAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDGFLQ 166
Query: 278 ISHVEESDSGVWNCVANNSEGQ 299
I + E D G + CVA NS G
Sbjct: 167 IENSREEDQGKYECVAENSMGT 188
Score = 85.6 bits (212), Expect = 1e-19
Identities = 30/143 (20%), Positives = 49/143 (34%), Gaps = 24/143 (16%)
Query: 234 VKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI---GSSLSISHVEE----SDS 286
V+ C+A+G+P P+I W K V + + +SI +E D
Sbjct: 18 VRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDD 77
Query: 287 GVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRIL 346
+ CVA N G L + E +K + +
Sbjct: 78 APYECVAENGVGDAVSA--------------DATL---TIYEGDKTPAGFPVITQGPGTR 120
Query: 347 NVKKDESVILPCSAQGNPLPTIK 369
++ +V++ C A GNP P I
Sbjct: 121 VIEVGHTVLMTCKAIGNPTPNIY 143
Score = 72.9 bits (179), Expect = 3e-15
Identities = 32/174 (18%), Positives = 55/174 (31%), Gaps = 40/174 (22%)
Query: 21 VVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRNSDEVLVL------------DR 65
V VG +C P + W K+G + VL
Sbjct: 16 QGVRVGGVASFYCAARGDPPPSIV----WRKNGKKVSGTQSRYTVLEQPGGISILRIEPV 71
Query: 66 VQREDAGMYQCHVS---ADDDSAQMSAQVILGGELVEIASS-----NQVVVDVGHRIELH 117
D Y+C D SA + + G + V++VGH + +
Sbjct: 72 RAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMT 131
Query: 118 CRVS--PK-RLSSAKAWLKDGLVLRRNS------DEVLVLDRVQREDAGMYQCH 162
C+ P + W+K+ + ++ D L ++ + ED G Y+C
Sbjct: 132 CKAIGNPTPNIY----WIKNQTKVDMSNPRYSLKDGFLQIENSREEDQGKYECV 181
Score = 49.8 bits (119), Expect = 2e-07
Identities = 17/77 (22%), Positives = 32/77 (41%), Gaps = 14/77 (18%)
Query: 12 SIEMSPSGQVVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRNS------DEVLV 62
I P +V+ VGH + + C+ P + W+K+ + ++ D L
Sbjct: 112 VITQGPGTRVIE-VGHTVLMTCKAIGNPTPNIY----WIKNQTKVDMSNPRYSLKDGFLQ 166
Query: 63 LDRVQREDAGMYQCHVS 79
++ + ED G Y+C
Sbjct: 167 IENSREEDQGKYECVAE 183
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling
protein,transferase; 2.21A {Rattus norvegicus}
Length = 192
Score = 100 bits (251), Expect = 2e-25
Identities = 46/200 (23%), Positives = 78/200 (39%), Gaps = 42/200 (21%)
Query: 106 VVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCH 162
V V C V P+ +S W ++ ++++
Sbjct: 17 VDALVEEVATFMCAVESYPQPEIS----WTRNKILIKLF--------------------- 51
Query: 163 IEDGKYHMLSSG-ELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLS 221
D +Y + +G L I V++SD Y C N + G + ++
Sbjct: 52 --DTRYSIRENGQLLTILSVEDSDD-GIYCCTANNGV---------GGAVESCGALQVKM 99
Query: 222 AAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQ-RIGSSLSISH 280
K+ + + + +LPC+ GNP P++ W K DS + E+ RI SL I +
Sbjct: 100 KPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLESGSLRIHN 159
Query: 281 VEESDSGVWNCVANNSEGQD 300
V++ D+G + CVA NS G
Sbjct: 160 VQKEDAGQYRCVAKNSLGTA 179
Score = 90.9 bits (226), Expect = 7e-22
Identities = 30/141 (21%), Positives = 53/141 (37%), Gaps = 27/141 (19%)
Query: 232 LNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESD-RIQRI--GSSLSISHVEESDSGV 288
++ +E C+ + P P I W + ++ D R G L+I VE+SD G+
Sbjct: 17 VDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQLLTILSVEDSDDGI 76
Query: 289 WNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNV 348
+ C ANN G + S + + K+ + +
Sbjct: 77 YCCTANNGVGGA---------------VESCGALQ---------VKMKPKITRPPINVKI 112
Query: 349 KKDESVILPCSAQGNPLPTIK 369
+ +LPC+ GNP P++
Sbjct: 113 IEGLKAVLPCTTMGNPKPSVS 133
Score = 80.2 bits (198), Expect = 5e-18
Identities = 37/184 (20%), Positives = 66/184 (35%), Gaps = 44/184 (23%)
Query: 6 QVKSSLSIEMSPSGQVVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVL--------R 54
++ + I V V C V P+ +S W ++ +++
Sbjct: 3 KLPKAPVITTPLE-TVDALVEEVATFMCAVESYPQPEIS----WTRNKILIKLFDTRYSI 57
Query: 55 RNSDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVIL-GGELVEIASS-------NQV 106
R + ++L + V+ D G+Y C +A + +++ V
Sbjct: 58 RENGQLLTILSVEDSDDGIYCC-------TANNGVGGAVESCGALQVKMKPKITRPPINV 110
Query: 107 VVDVGHRIELHCRV--SPK-RLSSAKAWLKDGLVLRRN------SDEVLVLDRVQREDAG 157
+ G + L C +PK +S W+K LR N L + VQ+EDAG
Sbjct: 111 KIIEGLKAVLPCTTMGNPKPSVS----WIKGDSALRENSRIAVLESGSLRIHNVQKEDAG 166
Query: 158 MYQC 161
Y+C
Sbjct: 167 QYRC 170
Score = 51.7 bits (124), Expect = 4e-08
Identities = 26/84 (30%), Positives = 35/84 (41%), Gaps = 14/84 (16%)
Query: 5 IQVKSSLSIEMSPSGQVVVDVGHRIELHCRV--SPK-RLSSAKAWLKDGLVLRRN----- 56
+QVK I P V + G + L C +PK +S W+K LR N
Sbjct: 95 LQVKMKPKITRPPI-NVKIIEGLKAVLPCTTMGNPKPSVS----WIKGDSALRENSRIAV 149
Query: 57 -SDEVLVLDRVQREDAGMYQCHVS 79
L + VQ+EDAG Y+C
Sbjct: 150 LESGSLRIHNVQKEDAGQYRCVAK 173
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region
plasiticity, cell adhesion; HET: PG6; 2.50A {Homo
sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A
Length = 331
Score = 102 bits (255), Expect = 6e-25
Identities = 46/349 (13%), Positives = 92/349 (26%), Gaps = 81/349 (23%)
Query: 6 QVKSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAK---AWLKDGLVLRRN------ 56
Q+ S + + + +G + LHC + S W K ++N
Sbjct: 9 QMGRDPSQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNP 68
Query: 57 ---------------------SDEVLVLDRVQREDAGMYQCHVSADDDSAQM-SAQVILG 94
+D + L R++ ED G+Y C + + + +
Sbjct: 69 SMGVSVLAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVM 128
Query: 95 GELVEIASSNQVVVDV-----GHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLD 149
+ Q V+ + C + + S +W
Sbjct: 129 AKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQ------- 181
Query: 150 RVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASL---LSV 206
I + + + E+ + +S C + L+V
Sbjct: 182 ------------EIRNPNGTVTVISRYRLVPSREAHQ-QSLACIVNYHMDRFKESLTLNV 228
Query: 207 N---RGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPT-IKWYKQDSP 262
+ + + V L C A NP T W +
Sbjct: 229 QYEPEVTIEGFDGNW---------------YLQRMDVKLTCKADANPPATEYHWTTLNGS 273
Query: 263 VEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEG--QDKMQLFIQYA 309
+ + Q + + S +G + C A N G ++++ I A
Sbjct: 274 LPKGVEAQN-RTLFFKGPINYSLAGTYICEATNPIGTRSGQVEVNITEA 321
Score = 87.9 bits (217), Expect = 1e-19
Identities = 46/283 (16%), Positives = 89/283 (31%), Gaps = 48/283 (16%)
Query: 98 VEIASSNQVVVDVGHRIELHCRVSPKRLSSAK---AWLKDGLVLRRNSDEVLVLDRVQRE 154
+ ++ + +G + LHC + S W K ++N + +
Sbjct: 16 QVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNV--AIYNPSMGVS 73
Query: 155 DAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLT 214
Y+ +E + + G + + +++ D Y C TG +L+LT
Sbjct: 74 VLAPYRERVEFLRPS-FTDGTIRLSRLELEDE-GVYICEFATFPTGN-----RESQLNLT 126
Query: 215 ENKRLLSAAKMFEK-HRILNVKKDESVILPC-SAQGNPLPTIKWYKQDSPVEESDRIQR- 271
+ + + + R + D+ ++ C SA G P + W + E I+
Sbjct: 127 VMAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNP 186
Query: 272 -----IGSSLSISHVEESDSGVWNCVANNSEG--QDKMQLFIQYAHGKYHMLSSGELIIH 324
+ S + E+ C+ N ++ + L +QY E+ I
Sbjct: 187 NGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQYE---------PEVTIE 237
Query: 325 QVDEKNKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPT 367
D + V L C A NP T
Sbjct: 238 GFDGNW-----------------YLQRMDVKLTCKADANPPAT 263
Score = 47.1 bits (111), Expect = 5e-06
Identities = 21/164 (12%), Positives = 47/164 (28%), Gaps = 46/164 (28%)
Query: 232 LNVKKDESVILPCSAQGNP----LPTIKWYKQDSPVEE-----------------SDRIQ 270
+ V+L CS + + W K + ++ +R++
Sbjct: 24 MYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVE 83
Query: 271 RIGS-----SLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQ 325
+ ++ +S +E D GV+ C ++ + + + Q
Sbjct: 84 FLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRE----SQLNLTVMAKPTNWIEGTQ 139
Query: 326 VDEKNKRLLSAAKMFEKHRILNVKKDESVILPC-SAQGNPLPTI 368
R + D+ ++ C SA G P +
Sbjct: 140 A---------------VLRAKKGQDDKVLVATCTSANGKPPSVV 168
Score = 45.9 bits (108), Expect = 1e-05
Identities = 9/79 (11%), Positives = 23/79 (29%), Gaps = 4/79 (5%)
Query: 5 IQVKSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN----SDEV 60
+ V+ + + ++L C+ ++ W L + + +
Sbjct: 226 LNVQYEPEVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKGVEAQNRTL 285
Query: 61 LVLDRVQREDAGMYQCHVS 79
+ AG Y C +
Sbjct: 286 FFKGPINYSLAGTYICEAT 304
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody,
immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S
3cm9_S 3chn_J 3cm9_J
Length = 585
Score = 104 bits (259), Expect = 1e-24
Identities = 47/403 (11%), Positives = 108/403 (26%), Gaps = 78/403 (19%)
Query: 8 KSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSS--AKAWLKDGLVLR----------- 54
KS + P +V G+ + + C P ++ K W + G
Sbjct: 1 KSPIF---GPE-EVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYV 56
Query: 55 --------------RNSDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGELVEI 100
N V+ + ++ ++D+G Y+C + + + + +
Sbjct: 57 SSKYAGRANLTNFPENGTFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVSQGPGLL 116
Query: 101 ASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQ 160
+ VD+G + ++C + K+ K V+ +
Sbjct: 117 NDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQI---GLYPVLVIDSSGYVNPN----- 168
Query: 161 CHIEDGKYHMLSSGE------LIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLT 214
G+ + G ++I+Q+ SD Y C+ + + + L
Sbjct: 169 ---YTGRIRLDIQGTGQLLFSVVINQLRLSDA-GQYLCQAGDDSNSNK-KNADLQVLKPE 223
Query: 215 ENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEE-------SD 267
H L + C + +
Sbjct: 224 PELVYEDLRGSVTFHCALGPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNP 283
Query: 268 RIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVD 327
+ + S+ I+ + + D+G + C A++ + +
Sbjct: 284 QDKDGSFSVVITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNEE------------ 331
Query: 328 EKNKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKY 370
+ + ++ SV + C +IKY
Sbjct: 332 ---------STIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKY 365
Score = 89.7 bits (221), Expect = 1e-19
Identities = 40/313 (12%), Positives = 88/313 (28%), Gaps = 45/313 (14%)
Query: 20 QVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVL-----------RRNSDEVLVLDRVQR 68
+ +V + + CR S ++ +V+ +++
Sbjct: 240 ALGPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRK 299
Query: 69 EDAGMYQCHVSADDDSAQMSAQVILGGELVEIASSNQ----VVVDVGHRIELHCRVSPKR 124
EDAG Y C +D + S + E ++ + V G + + C + K
Sbjct: 300 EDAGRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVLCPYNRKE 359
Query: 125 LSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDES 184
S K W ++ + + Y+ + + + +I++Q+
Sbjct: 360 SKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQ---YEGRLSLLEEPGNGTFTVILNQLTSR 416
Query: 185 DRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPC 244
D Y C + T +++ + + E++ +PC
Sbjct: 417 DA-GFYWC-------LTN----GDTLWRTTVEIKIIEGEPNLKVPGNVTAVLGETLKVPC 464
Query: 245 S----AQGNPLPTIKWYKQDSPVEESDRIQRIGS-----------SLSISHVEESDSGVW 289
KW S + SL+++ V +D G +
Sbjct: 465 HFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWY 524
Query: 290 NCVANNSEGQDKM 302
C +
Sbjct: 525 WCGVKQGHFYGET 537
Score = 82.0 bits (201), Expect = 3e-17
Identities = 41/342 (11%), Positives = 91/342 (26%), Gaps = 70/342 (20%)
Query: 55 RNSDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGELVEIASSNQVVVDVGHRI 114
+V+++++ DAG Y C D +S + +A V V D+ +
Sbjct: 181 GQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNAD-----LQVLKPEPELVYEDLRGSV 235
Query: 115 ELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSG 174
HC + P+ + AK + + +V+V +R A + + S
Sbjct: 236 TFHCALGPEVANVAKFLCR---QSSGENCDVVVNTLGKRAPAFEGRILLNP--QDKDGSF 290
Query: 175 ELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNV 234
++I + + D R Y C + G + + + ++
Sbjct: 291 SVVITGLRKEDAGR-YLCGAHSDGQLQ------EGSPIQAWQLFVNEESTIPRSPTVVKG 343
Query: 235 KKDESVILPCSAQGNPLPTIKWYKQDSPVEES-----------------------DRIQR 271
SV + C +IK++ + +
Sbjct: 344 VAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGN 403
Query: 272 IGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNK 331
++ ++ + D+G + C+ N
Sbjct: 404 GTFTVILNQLTSRDAGFYWCLTNGDTLWRTTVEIKII----------------------- 440
Query: 332 RLLSAAKMFEKHRILNVKKDESVILPCS----AQGNPLPTIK 369
+ + E++ +PC K
Sbjct: 441 ---EGEPNLKVPGNVTAVLGETLKVPCHFPCKFSSYEKYWCK 479
Score = 40.0 bits (92), Expect = 0.001
Identities = 23/140 (16%), Positives = 39/140 (27%), Gaps = 22/140 (15%)
Query: 15 MSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLK----------------DGLVLRRNSD 58
+ G V +G +++ C K S K W K + + +
Sbjct: 446 LKVPGNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDEN 505
Query: 59 E---VLVLDRVQREDAGMYQCHV-SADDDSAQMSAQVILGGELVEIASSNQVVVDVGHRI 114
L L+ V R D G Y C V + V + + A S V +
Sbjct: 506 SRLVSLTLNLVTRADEGWYWCGVKQGHFYGETAAVYVAVEER--KAAGSRDVSLAKADAA 563
Query: 115 ELHCRVSPKRLSSAKAWLKD 134
+ ++D
Sbjct: 564 PDEKVLDSGFREIENKAIQD 583
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A
2f8v_A
Length = 194
Score = 97.5 bits (243), Expect = 3e-24
Identities = 46/212 (21%), Positives = 79/212 (37%), Gaps = 42/212 (19%)
Query: 106 VVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCH 162
VVV G +S P +S W +DG V+ ++ Q
Sbjct: 15 VVVLEGSTATFEAHISGFPVPEVS----WFRDGQVISTSTLP-------------GVQIS 57
Query: 163 IEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSA 222
DG+ +L I V +++ R Y + N G + + L + +A
Sbjct: 58 FSDGRA------KLTIPAVTKANSGR-YSLKATNGS-GQATSTA---ELLVKAE----TA 102
Query: 223 AKMFEKH-RILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQ----RIGSSLS 277
F + + + V++ V L G P P +K+Y+ + ++ S Q SL
Sbjct: 103 PPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLL 162
Query: 278 ISHVEESDSGVWNCVANNSEGQD--KMQLFIQ 307
I+ DSG ++ A NS G+ +L +Q
Sbjct: 163 IAEAYPEDSGTYSVNATNSVGRATSTAELLVQ 194
Score = 92.9 bits (231), Expect = 1e-22
Identities = 27/145 (18%), Positives = 52/145 (35%), Gaps = 30/145 (20%)
Query: 232 LNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI------GSSLSISHVEESD 285
+ V + + G P+P + W++ + S + L+I V +++
Sbjct: 15 VVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKAN 74
Query: 286 SGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKH-R 344
SG ++ A N GQ S+ EL++ +A F + +
Sbjct: 75 SGRYSLKATNGSGQAT---------------STAELLVKAE--------TAPPNFVQRLQ 111
Query: 345 ILNVKKDESVILPCSAQGNPLPTIK 369
+ V++ V L G P P +K
Sbjct: 112 SMTVRQGSQVRLQVRVTGIPTPVVK 136
Score = 81.7 bits (202), Expect = 2e-18
Identities = 36/191 (18%), Positives = 70/191 (36%), Gaps = 43/191 (22%)
Query: 21 VVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRNSDE-----------VLVLDRV 66
VVV G +S P +S W +DG V+ ++ L + V
Sbjct: 15 VVVLEGSTATFEAHISGFPVPEVS----WFRDGQVISTSTLPGVQISFSDGRAKLTIPAV 70
Query: 67 QREDAGMYQCHVSADDDSAQMSAQVILGGELV--EIAS--SNQVVVDVGHRIELHCRVS- 121
+ ++G Y + A +A++++ E + V G ++ L RV+
Sbjct: 71 TKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQ-GSQVRLQVRVTG 129
Query: 122 -PK-RLSSAKAWLKDGLVLRRNSD---------EVLVLDRVQREDAGMYQCHI--EDGKY 168
P + + +DG ++ + D L++ ED+G Y + G+
Sbjct: 130 IPTPVVK----FYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNSVGR- 184
Query: 169 HMLSSGELIIH 179
S+ EL++
Sbjct: 185 -ATSTAELLVQ 194
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB:
2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Length = 212
Score = 97.6 bits (243), Expect = 4e-24
Identities = 49/206 (23%), Positives = 77/206 (37%), Gaps = 39/206 (18%)
Query: 106 VVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCH 162
G C+ + P+ ++ W K G + EV+ D
Sbjct: 16 QTGVSGGVASFICQATGDPRPKIV----WNKKGKKVSNQRFEVIEFD------------- 58
Query: 163 IEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSA 222
DG +L I D Y+C N + G +S RL++ ++
Sbjct: 59 --DGSGSVL----RIQPLRTPRDE-AIYECVASNNV-GEISVST---RLTVLREDQIPRG 107
Query: 223 AKMFEKH-RILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI-------GS 274
+ ++ V++ + + C+A GNP P I W+K PV+ S+ RI
Sbjct: 108 FPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIG 167
Query: 275 SLSISHVEESDSGVWNCVANNSEGQD 300
+L I EESD G + CVA NS G
Sbjct: 168 ALQIEQSEESDQGKYECVATNSAGTR 193
Score = 89.9 bits (223), Expect = 3e-21
Identities = 30/144 (20%), Positives = 49/144 (34%), Gaps = 24/144 (16%)
Query: 232 LNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI-----GSSLSISHVE-ESD 285
C A G+P P I W K+ V GS L I + D
Sbjct: 16 QTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRD 75
Query: 286 SGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRI 345
++ CVA+N+ G+ S L V +++ + ++
Sbjct: 76 EAIYECVASNNVGEIS---------------VSTRL---TVLREDQIPRGFPTIDMGPQL 117
Query: 346 LNVKKDESVILPCSAQGNPLPTIK 369
V++ + + C+A GNP P I
Sbjct: 118 KVVERTRTATMLCAASGNPDPEIT 141
Score = 70.6 bits (173), Expect = 2e-14
Identities = 31/186 (16%), Positives = 61/186 (32%), Gaps = 45/186 (24%)
Query: 12 SIEMSPSGQVVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRNSDEVLVLD---- 64
+P G C+ + P+ ++ W K G + EV+ D
Sbjct: 8 RFTRTPV-DQTGVSGGVASFICQATGDPRPKIV----WNKKGKKVSNQRFEVIEFDDGSG 62
Query: 65 ---RVQR----EDAGMYQCHV--SADDDSAQMSAQVILGGELVEIASS-----NQVVVDV 110
R+Q D +Y+C + + S V+ ++ + VV+
Sbjct: 63 SVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVER 122
Query: 111 GHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRNSDE------------VLVLDRVQRED 155
+ C S P ++ W KD L + +++ L +++ + D
Sbjct: 123 TRTATMLCAASGNPDPEIT----WFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESD 178
Query: 156 AGMYQC 161
G Y+C
Sbjct: 179 QGKYEC 184
Score = 45.6 bits (108), Expect = 7e-06
Identities = 17/83 (20%), Positives = 33/83 (39%), Gaps = 20/83 (24%)
Query: 12 SIEMSPSGQVVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRNSDE--------- 59
+I+M P VV+ + C S P ++ W KD L + +++
Sbjct: 110 TIDMGPQ-LKVVERTRTATMLCAASGNPDPEIT----WFKDFLPVDTSNNNGRIKQLRSE 164
Query: 60 ---VLVLDRVQREDAGMYQCHVS 79
L +++ + D G Y+C +
Sbjct: 165 SIGALQIEQSEESDQGKYECVAT 187
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein,
serine/threonine-protein KI LIMB-girdle muscular
dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB:
2j8o_A 2ill_A
Length = 197
Score = 96.7 bits (241), Expect = 6e-24
Identities = 44/214 (20%), Positives = 75/214 (35%), Gaps = 43/214 (20%)
Query: 106 VVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCH 162
+ V L C+V+ PK + W + G + + + R+Q G +Q
Sbjct: 14 LNVRYQSNATLVCKVTGHPKPIVK----WYRQGKEIIADGLKY----RIQEFKGGYHQ-- 63
Query: 163 IEDGKYHMLSSGELIIHQVDESDRYRS--YQCRGVNKLTGASLLSVNRGRLSLTENKRLL 220
LII V + D + YQ R N+ S L + ++
Sbjct: 64 -------------LIIASVTDDD---ATVYQVRATNQGGSVS----GTASLEVEVPAKI- 102
Query: 221 SAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQ-----RIGSS 275
K E ++ + E V + G P P I W K ++ + Q S
Sbjct: 103 HLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSL 162
Query: 276 LSISHVEESDSGVWNCVANNSEGQDK--MQLFIQ 307
+ + VE D+G + A N G D+ ++L +
Sbjct: 163 VFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVA 196
Score = 95.6 bits (238), Expect = 1e-23
Identities = 32/146 (21%), Positives = 50/146 (34%), Gaps = 26/146 (17%)
Query: 230 RILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI------GSSLSISHVEE 283
R LNV+ + L C G+P P +KWY+Q + RI L I+ V +
Sbjct: 12 RNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTD 71
Query: 284 SDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKH 343
D+ V+ A N G + L + + + K E
Sbjct: 72 DDATVYQVRATNQGGSVS---------------GTASLEVEVPAK-----IHLPKTLEGM 111
Query: 344 RILNVKKDESVILPCSAQGNPLPTIK 369
++ + E V + G P P I
Sbjct: 112 GAVHALRGEVVSIKIPFSGKPDPVIT 137
Score = 77.8 bits (192), Expect = 5e-17
Identities = 31/181 (17%), Positives = 60/181 (33%), Gaps = 50/181 (27%)
Query: 21 VVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRNSDE-----------VLVLDRV 66
+ V L C+V+ PK + W + G + + + L++ V
Sbjct: 14 LNVRYQSNATLVCKVTGHPKPIVK----WYRQGKEIIADGLKYRIQEFKGGYHQLIIASV 69
Query: 67 QREDAGMYQCHVSADDDSAQMSAQVILGGELVEIASSNQ----------VVVDVGHRIEL 116
+DA +YQ + S +A + VE+ + V G + +
Sbjct: 70 TDDDATVYQVRATNQGGSVSGTASLE-----VEVPAKIHLPKTLEGMGAVHALRGEVVSI 124
Query: 117 HCRVS--PK-RLSSAKAWLKDGLVLRRNSD----------EVLVLDRVQREDAGMYQCHI 163
S P ++ W K ++ N ++ + V+R+DAG Y
Sbjct: 125 KIPFSGKPDPVIT----WQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCA 180
Query: 164 E 164
+
Sbjct: 181 K 181
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain,
immunoglobulin superfamily, transmembrane,
phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A
{Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Length = 389
Score = 100 bits (250), Expect = 8e-24
Identities = 35/214 (16%), Positives = 65/214 (30%), Gaps = 39/214 (18%)
Query: 104 NQVVVDVGHRIELHCRVS--PKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQC 161
N+ ++ L C P + W + + + R++ +
Sbjct: 9 NETTY-ENGQVTLVCDAEGEPIPEIT---WKRAVDGFTFTEGDKSLDGRIEVK------- 57
Query: 162 HIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLS 221
S L I V SD R Y C +++ G L +
Sbjct: 58 -------GQHGSSSLHIKDVKLSDSGR-YDCEAASRIGGHQ----KSMYLDIEY------ 99
Query: 222 AAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESD--RIQRIG----SS 275
A K I + + + C + NP +I W + + + ++
Sbjct: 100 APKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMI 159
Query: 276 LSISHVEESDSGVWNCVANNSEGQD--KMQLFIQ 307
L I+ ++D G +NC A N G + L +
Sbjct: 160 LEIAPTSDNDFGRYNCTATNHIGTRFQEYILALA 193
Score = 89.5 bits (222), Expect = 4e-20
Identities = 34/147 (23%), Positives = 51/147 (34%), Gaps = 36/147 (24%)
Query: 234 VKKDESVILPCSAQGNPLPTIKWYK-------QDSPVEESDRIQRIG----SSLSISHVE 282
++ V L C A+G P+P I W + + RI+ G SSL I V+
Sbjct: 12 TYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVK 71
Query: 283 ESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEK 342
SDSG ++C A + G + S L I A K
Sbjct: 72 LSDSGRYDCEAASRIGGHQ---------------KSMYLDIE----------YAPKFISN 106
Query: 343 HRILNVKKDESVILPCSAQGNPLPTIK 369
I + + + C + NP +I
Sbjct: 107 QTIYYSWEGNPINISCDVKSNPPASIH 133
Score = 74.1 bits (182), Expect = 9e-15
Identities = 29/178 (16%), Positives = 49/178 (27%), Gaps = 43/178 (24%)
Query: 21 VVVDVGHRIELHCRVS--PKRLSSAKAWLKDGLVLRRNSDEV----------------LV 62
++ L C P + W + + L
Sbjct: 10 ETTYENGQVTLVCDAEGEPIPEIT---WKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLH 66
Query: 63 LDRVQREDAGMYQCHVSADDDSAQMSAQVILGGELVEIA-----SSNQVVVDVGHRIELH 117
+ V+ D+G Y C ++ Q S + +E A + G+ I +
Sbjct: 67 IKDVKLSDSGRYDCEAASRIGGHQKSMYLD-----IEYAPKFISNQTIYYSWEGNPINIS 121
Query: 118 CRVSPKRLSSAKAWLKDGLVLRRNSDE-----------VLVLDRVQREDAGMYQCHIE 164
C V +S W +D LVL + +L + D G Y C
Sbjct: 122 CDVKSNPPASIH-WRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTAT 178
Score = 55.6 bits (134), Expect = 8e-09
Identities = 15/100 (15%), Positives = 32/100 (32%), Gaps = 13/100 (13%)
Query: 4 FIQVKSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDE---- 59
++ ++ + + + G+ I + C V +S W +D LVL +
Sbjct: 94 YLDIEYAPKFISNQTIYYSW-EGNPINISCDVKSNPPASIH-WRRDKLVLPAKNTTNLKT 151
Query: 60 -------VLVLDRVQREDAGMYQCHVSADDDSAQMSAQVI 92
+L + D G Y C + + +
Sbjct: 152 YSTGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILA 191
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI
cardiomyopathy, disease mutation, disulfide bond,
immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Length = 197
Score = 95.9 bits (239), Expect = 1e-23
Identities = 36/218 (16%), Positives = 69/218 (31%), Gaps = 55/218 (25%)
Query: 106 VVVDVGHRIELHCRVS----PKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQC 161
V +G +L C++ P W + G L
Sbjct: 17 VTTKLGEAAQLSCQIVGRPLPDI-----KWYRFGKELI---------------------- 49
Query: 162 HIEDGKYHMLSSGE---LIIHQVDESDRYRS--YQCRGVNKLTGASLLSVNRGRLSLTEN 216
+ KY M S G L + ++ D Y C N++ +L L
Sbjct: 50 --QSRKYKMSSDGRTHTLTVMTEEQED---EGVYTCIATNEVGEVET----SSKLLLQAT 100
Query: 217 KRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI---- 272
+ + EK ++ L G P+P + W+ ++ S+ I
Sbjct: 101 PQFHPGYPLKEK---YYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSENITIENTEH 157
Query: 273 GSSLSISHVE-ESDSGVWNCVANNSEGQD--KMQLFIQ 307
+ L + +V+ ++ +G + +N G + + IQ
Sbjct: 158 YTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEIQ 195
Score = 95.1 bits (237), Expect = 2e-23
Identities = 28/142 (19%), Positives = 54/142 (38%), Gaps = 26/142 (18%)
Query: 232 LNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI----GSSLSISHVEESDSG 287
+ K E+ L C G PLP IKWY+ + +S + + +L++ E+ D G
Sbjct: 17 VTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEG 76
Query: 288 VWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILN 347
V+ C+A N G+ + +S +L++ + + +
Sbjct: 77 VYTCIATNEVGEVE---------------TSSKLLLQATPQFHPG-------YPLKEKYY 114
Query: 348 VKKDESVILPCSAQGNPLPTIK 369
++ L G P+P +
Sbjct: 115 GAVGSTLRLHVMYIGRPVPAMT 136
Score = 74.7 bits (184), Expect = 5e-16
Identities = 31/173 (17%), Positives = 61/173 (35%), Gaps = 38/173 (21%)
Query: 21 VVVDVGHRIELHCRVS----PKRLSSAKAWLKDGLVLRRNSD---------EVLVLDRVQ 67
V +G +L C++ P W + G L ++ L + +
Sbjct: 17 VTTKLGEAAQLSCQIVGRPLPDI-----KWYRFGKELIQSRKYKMSSDGRTHTLTVMTEE 71
Query: 68 REDAGMYQCHVSADDDSAQMSAQVILGGE---LVEIASSNQVVVDVGHRIELHCRVS--P 122
+ED G+Y C + + + S++++L + VG + LH P
Sbjct: 72 QEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRP 131
Query: 123 K-RLSSAKAWLKDGLVLRRNSD---------EVLVLDRVQRE-DAGMYQCHIE 164
++ W +L+ + + LV+ VQR+ AG Y+ +
Sbjct: 132 VPAMT----WFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLS 180
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, IG, membrane, homphilic,
glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB:
2xy2_A* 2vaj_A
Length = 189
Score = 95.6 bits (238), Expect = 1e-23
Identities = 26/143 (18%), Positives = 50/143 (34%), Gaps = 30/143 (20%)
Query: 232 LNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI----GSSLSISHVEESDSG 287
+ + ES C+A G P + Q + + R+ S L+I + D+G
Sbjct: 12 VELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAG 71
Query: 288 VWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKH-RIL 346
++ C A +++GQ + ++ L I+Q F +
Sbjct: 72 IYRCQATDAKGQTQE--------------ATVVLEIYQ-----------KLTFREVVSPQ 106
Query: 347 NVKKDESVILPCSAQGNPLPTIK 369
K+ E + C +P P +
Sbjct: 107 EFKQGEDAEVVCRVSSSPAPAVS 129
Score = 92.5 bits (230), Expect = 2e-22
Identities = 30/198 (15%), Positives = 56/198 (28%), Gaps = 39/198 (19%)
Query: 106 VVVDVGHRIELHCRVS--PKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHI 163
V + VG C P+ + + G + RV + G
Sbjct: 12 VELSVGESKFFTCTAIGEPESIDW---YNPQGEKIIST-------QRVVVQKEG------ 55
Query: 164 EDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAA 223
L I+ + D Y+C+ + T +
Sbjct: 56 --------VRSRLTIYNANIEDA-GIYRCQATDAKGQTQ---------EATVVLEIYQKL 97
Query: 224 KMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPV--EESDRIQRIGS-SLSISH 280
E K+ E + C +P P + W + V +R + + +L I +
Sbjct: 98 TFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILN 157
Query: 281 VEESDSGVWNCVANNSEG 298
+ +SD G++ C
Sbjct: 158 INKSDEGIYRCEGRVEAR 175
Score = 79.1 bits (195), Expect = 1e-17
Identities = 36/179 (20%), Positives = 63/179 (35%), Gaps = 31/179 (17%)
Query: 9 SSLSIEMSPSGQVVVDVGHRIELHCRVS--PKRLSSAKAWLKDG---------LVLRRNS 57
+ L + +S S +V + VG C P+ + + G +V +
Sbjct: 1 ALLQVTISLS-KVELSVGESKFFTCTAIGEPESIDW---YNPQGEKIISTQRVVVQKEGV 56
Query: 58 DEVLVLDRVQREDAGMYQCHVSADDDSAQM-SAQVILGGELVEIASSNQVVVDVGHRIEL 116
L + EDAG+Y+C + Q + + + +L + G E+
Sbjct: 57 RSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEV 116
Query: 117 HCRVS--PK-RLSSAKAWLKDGLVLRRNSDE--------VLVLDRVQREDAGMYQCHIE 164
CRVS P +S WL + SD L + + + D G+Y+C
Sbjct: 117 VCRVSSSPAPAVS----WLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGR 171
Score = 53.6 bits (129), Expect = 1e-08
Identities = 25/117 (21%), Positives = 41/117 (35%), Gaps = 29/117 (24%)
Query: 5 IQVKSSLSIEMSPSGQVVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRNSDE-- 59
+++ L+ S G E+ CRVS P +S WL + SD
Sbjct: 91 LEIYQKLTFREVVS-PQEFKQGEDAEVVCRVSSSPAPAVS----WLYHNEEVTTISDNRF 145
Query: 60 ------VLVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGELVEIASSNQVVVDV 110
L + + + D G+Y+C +V GE+ V+V+V
Sbjct: 146 AMLANNNLQILNINKSDEGIYRCE-----------GRVEARGEI--DFRDIIVIVNV 189
Score = 34.8 bits (80), Expect = 0.026
Identities = 7/26 (26%), Positives = 10/26 (38%)
Query: 346 LNVKKDESVILPCSAQGNPLPTIKYR 371
+ + ES C+A G P Y
Sbjct: 12 VELSVGESKFFTCTAIGEPESIDWYN 37
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation,
phosphorylation, disease MU neuronal development,
immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens}
PDB: 2v9q_A
Length = 212
Score = 95.6 bits (238), Expect = 2e-23
Identities = 45/206 (21%), Positives = 78/206 (37%), Gaps = 42/206 (20%)
Query: 106 VVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCH 162
++V G L+C+ P + W K G + + D+
Sbjct: 19 LIVSKGEPATLNCKAEGRPTPTIE----WYKGGERVETDKDDP----------------- 57
Query: 163 IEDGKYHMLSSGELIIHQVDESDRYRS----YQCRGVNKLTGASLLSVNRGRLSLTENKR 218
+L SG L ++ + R Y C N L G ++ S +
Sbjct: 58 --RSHRMLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYL-GEAV--------SHDASLE 106
Query: 219 LLSAAKMFEKH-RILNVKKDESVILPCSA-QGNPLPTIKWYKQDSPVEESDRIQRI-GSS 275
+ F ++ + V E ++ C +G+P PTI W K SP+++ D I G
Sbjct: 107 VAILRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIRGGK 166
Query: 276 LSISHVEESDSGVWNCVANNSEGQDK 301
L I++ +SD+G + CV N G+ +
Sbjct: 167 LMITYTRKSDAGKYVCVGTNMVGERE 192
Score = 75.2 bits (185), Expect = 4e-16
Identities = 37/148 (25%), Positives = 51/148 (34%), Gaps = 37/148 (25%)
Query: 234 VKKDESVILPCSAQGNPLPTIKWYK------QDSPVEESDRIQRIGSSLSISHV-----E 282
V K E L C A+G P PTI+WYK D S R+ SL +
Sbjct: 21 VSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKS 80
Query: 283 ESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEK 342
D GV+ CVA N G+ L + F +
Sbjct: 81 RPDEGVYVCVARNYLGEAVSH--------------DASLEVA----------ILRDDFRQ 116
Query: 343 H-RILNVKKDESVILPCSA-QGNPLPTI 368
+ + V E ++ C +G+P PTI
Sbjct: 117 NPSDVMVAVGEPAVMECQPPRGHPEPTI 144
Score = 71.4 bits (175), Expect = 1e-14
Identities = 37/174 (21%), Positives = 63/174 (36%), Gaps = 41/174 (23%)
Query: 21 VVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRNSDEV----------------L 61
++V G L+C+ P + W K G + + D+ +
Sbjct: 19 LIVSKGEPATLNCKAEGRPTPTIE----WYKGGERVETDKDDPRSHRMLLPSGSLFFLRI 74
Query: 62 VLDRVQREDAGMYQCHVS---ADDDSAQMSAQVILGGELVEIASSNQVVVDVGHRIELHC 118
V R R D G+Y C + S S +V + + S+ +V VG + C
Sbjct: 75 VHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVA-VGEPAVMEC 133
Query: 119 RV---SPK-RLSSAKAWLKDGLVLRRNSDEV------LVLDRVQREDAGMYQCH 162
+ P+ +S W KDG L + + L++ ++ DAG Y C
Sbjct: 134 QPPRGHPEPTIS----WKKDGSPLDDKDERITIRGGKLMITYTRKSDAGKYVCV 183
Score = 50.6 bits (121), Expect = 1e-07
Identities = 19/78 (24%), Positives = 32/78 (41%), Gaps = 15/78 (19%)
Query: 12 SIEMSPSGQVVVDVGHRIELHCRV---SPK-RLSSAKAWLKDGLVLRRNSDEV------L 61
+PS +V VG + C+ P+ +S W KDG L + + L
Sbjct: 113 DFRQNPSDVMVA-VGEPAVMECQPPRGHPEPTIS----WKKDGSPLDDKDERITIRGGKL 167
Query: 62 VLDRVQREDAGMYQCHVS 79
++ ++ DAG Y C +
Sbjct: 168 MITYTRKSDAGKYVCVGT 185
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell
adhesion, transmembrane, disulfide bond, alternative
splicing; HET: NAG; 1.95A {Rattus norvegicus}
Length = 190
Score = 94.5 bits (235), Expect = 4e-23
Identities = 38/220 (17%), Positives = 77/220 (35%), Gaps = 61/220 (27%)
Query: 106 VVVDVGHRIELHCRVS--PKRLSSAKAWLKDGLVL----RRNSDEVLVLDRVQREDAGMY 159
++ D + L C ++ L + W K+G+ L + S+ +++ + ED+G Y
Sbjct: 13 IIRDSLLPVTLQCNLTSSSHTLMYSY-WTKNGVELTATRKNASNMEYRINKPRAEDSGEY 71
Query: 160 QCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRL 219
C + ++ ++ +
Sbjct: 72 HCV--------------------------------YHFVSAPK------ANATIE----V 89
Query: 220 LSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEE-----SDRIQRI-- 272
+A + R N + + ++ C + G P P W K+++ V E S R I
Sbjct: 90 KAAPDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINK 149
Query: 273 --GSSLSISHVE-ESDSGVWNCVANNSEGQD--KMQLFIQ 307
+ L+I +++ D G + C A NS G L ++
Sbjct: 150 ENYTELNIVNLQITEDPGEYECNATNSIGSASVSTVLRVR 189
Score = 85.3 bits (211), Expect = 8e-20
Identities = 18/142 (12%), Positives = 40/142 (28%), Gaps = 29/142 (20%)
Query: 230 RILNVKKDESVILPCSAQGNPLP--TIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSG 287
++ V L C+ + W K + + + I+ DSG
Sbjct: 11 EVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNAS-NMEYRINKPRAEDSG 69
Query: 288 VWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILN 347
++CV + ++ + + +A + R N
Sbjct: 70 EYHCVYHFVSAPK----------------ANATIEVK----------AAPDITGHKRSEN 103
Query: 348 VKKDESVILPCSAQGNPLPTIK 369
+ + ++ C + G P P
Sbjct: 104 KNEGQDAMMYCKSVGYPHPEWM 125
Score = 76.8 bits (189), Expect = 8e-17
Identities = 30/175 (17%), Positives = 62/175 (35%), Gaps = 33/175 (18%)
Query: 12 SIEMSPSGQVVVDVGHRIELHCRVS--PKRLSSAKAWLKDGLVL----RRNSDEVLVLDR 65
I S ++ D + L C ++ L + W K+G+ L + S+ +++
Sbjct: 5 RIVTSEE-VIIRDSLLPVTLQCNLTSSSHTLMYSY-WTKNGVELTATRKNASNMEYRINK 62
Query: 66 VQREDAGMYQCHVSADDDSAQMSAQVILGGELVEIASSNQVVVDVGHRIELHCRVS---- 121
+ ED+G Y C V + + +A + + + G ++C+
Sbjct: 63 PRAEDSGEYHC-VYHFVSAPKANATIEVKAAPDITGHKRSENKNEGQDAMMYCKSVGYPH 121
Query: 122 PKRLSSAKAWLKDG---------------LVLRRNSDEVLVLDRVQREDAGMYQC 161
P W K ++ + N E+ +++ ED G Y+C
Sbjct: 122 P-----EWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYEC 171
Score = 36.8 bits (85), Expect = 0.005
Identities = 19/106 (17%), Positives = 38/106 (35%), Gaps = 25/106 (23%)
Query: 5 IQVKSSLSIEMSPSGQVVVDVGHRIELHCRVS----PKRLSSAKAWLKDG---------- 50
I+VK++ I + G ++C+ P W K
Sbjct: 87 IEVKAAPDITGHKRSENKN-EGQDAMMYCKSVGYPHP-----EWMWRKKENGVFEEISNS 140
Query: 51 -----LVLRRNSDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQV 91
++ + N E+ +++ ED G Y+C+ + SA +S +
Sbjct: 141 SGRFFIINKENYTELNIVNLQITEDPGEYECNATNSIGSASVSTVL 186
Score = 32.9 bits (75), Expect = 0.100
Identities = 3/28 (10%), Positives = 8/28 (28%)
Query: 344 RILNVKKDESVILPCSAQGNPLPTIKYR 371
++ V L C+ + +
Sbjct: 11 EVIIRDSLLPVTLQCNLTSSSHTLMYSY 38
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif,
immunoglobulin-like domain, growth facto factor
receptor, extracellular; 2.10A {Homo sapiens} PDB:
1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E
1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Length = 231
Score = 93.4 bits (232), Expect = 2e-22
Identities = 30/146 (20%), Positives = 46/146 (31%), Gaps = 27/146 (18%)
Query: 230 RILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI-----GSSLSISHVEES 284
R+ V +V C A GNP+PT++W K ++ RI SL + V S
Sbjct: 27 RLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPS 86
Query: 285 DSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKH- 343
D G + CV N G + L + + R +
Sbjct: 87 DKGNYTCVVENEYGSIN---------------HTYHLDVVE------RSRHRPILQAGLP 125
Query: 344 RILNVKKDESVILPCSAQGNPLPTIK 369
+ V C + P I+
Sbjct: 126 ANASTVVGGDVEFVCKVYSDAQPHIQ 151
Score = 81.9 bits (202), Expect = 3e-18
Identities = 42/250 (16%), Positives = 69/250 (27%), Gaps = 71/250 (28%)
Query: 79 SADDDSAQMSAQVILGGELVEIASSNQVVVDVGHRIELHCRVS--PK-RLSSAKAWLKDG 135
++S A E +E V + ++ C P + WLK+G
Sbjct: 5 FVSENSNNKRAPYWTNTEKME---KRLHAVPAANTVKFRCPAGGNPMPTMR----WLKNG 57
Query: 136 LVLR----------RNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESD 185
+ RN L+++ V D G Y C +E+ + + L +
Sbjct: 58 KEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV-VERSRH 116
Query: 186 RYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCS 245
R N S G V C
Sbjct: 117 RPILQAGLPAN-------ASTVVG----------------------------GDVEFVCK 141
Query: 246 AQGNPLPTIKWYKQDS--------------PVEESDRIQRIG-SSLSISHVEESDSGVWN 290
+ P I+W K V + I L++ +V E+D+G +
Sbjct: 142 VYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYI 201
Query: 291 CVANNSEGQD 300
C +N GQ
Sbjct: 202 CKVSNYIGQA 211
Score = 79.2 bits (195), Expect = 3e-17
Identities = 40/191 (20%), Positives = 59/191 (30%), Gaps = 52/191 (27%)
Query: 14 EMSPSGQVVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLR----------RNSDEV 60
+M V + ++ C P + WLK+G + RN
Sbjct: 23 KMEKRLHAV-PAANTVKFRCPAGGNPMPTMR----WLKNGKEFKQEHRIGGYKVRNQHWS 77
Query: 61 LVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGE------LVEIASSNQVVVDVGHRI 114
L+++ V D G Y C V + S + + + L +N V VG +
Sbjct: 78 LIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTV-VGGDV 136
Query: 115 ELHCRVSPKRLSSAKA---WLKDGLVLRRNS--------------------DEVLVLDRV 151
E C+V S A+ W+K EVL L V
Sbjct: 137 EFVCKVY----SDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNV 192
Query: 152 QREDAGMYQCH 162
DAG Y C
Sbjct: 193 TEADAGEYICK 203
Score = 45.7 bits (108), Expect = 7e-06
Identities = 24/95 (25%), Positives = 29/95 (30%), Gaps = 27/95 (28%)
Query: 21 VVVDVGHRIELHCRVSPKRLSSAKA---WLKDGLVLRRNS-------------------- 57
VG +E C+V S A+ W+K
Sbjct: 128 ASTVVGGDVEFVCKVY----SDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSN 183
Query: 58 DEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVI 92
EVL L V DAG Y C VS A SA +
Sbjct: 184 AEVLALFNVTEADAGEYICKVSNYIGQANQSAWLT 218
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human
coxsackievirus A21, cryo-electron
microscopy,virus-receptor complex, icosahedral virus;
HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3
b.1.1.4 b.1.1.4 b.1.1.4
Length = 450
Score = 96.9 bits (240), Expect = 3e-22
Identities = 44/309 (14%), Positives = 85/309 (27%), Gaps = 70/309 (22%)
Query: 17 PSGQVVVDVGHRIELHCRVSPKRLSSAKA--WLKDGLVLRR------NSDEVLVLDRVQR 68
V++V + + C + S L +S V
Sbjct: 194 LVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTA 253
Query: 69 EDAGMYQ--CHVSADDDSAQMSAQVILGGELVEIASSNQVVVDVGHRIELHCRVSPK--- 123
ED G + C V + S + V + + V G + + C P+
Sbjct: 254 EDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEVSEGTEVTVKCEAHPRAKV 313
Query: 124 RLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDE 183
L+ + + R L+L ++
Sbjct: 314 TLN----GVPAQPLGPRAQ---LLLKATPEDNGR-------------------------- 340
Query: 184 SDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILN--VKKDESVI 241
S+ C ++ G + L R+L ++ E+ N ++
Sbjct: 341 -----SFSCSATLEVAGQLIHKNQTREL------RVLYGPRLDERDCPGNWTWPENSQQT 389
Query: 242 LPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQD- 300
C A GNPLP +K K + V G + C A +++G+
Sbjct: 390 PMCQAWGNPLPELKCLKDGTFPLPIGESVT---------VTRDLEGTYLCRARSTQGEVT 440
Query: 301 -KMQLFIQY 308
++ + +
Sbjct: 441 REVTVNVLS 449
Score = 94.2 bits (233), Expect = 2e-21
Identities = 52/371 (14%), Positives = 99/371 (26%), Gaps = 70/371 (18%)
Query: 13 IEMSPSGQVVVDVGHRIELHCRVS---PKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQRE 69
+SPS +V++ G + + C S P L K L+L N+ +V L VQ
Sbjct: 2 TSVSPS-KVILPRGGSVLVTCSTSCDQPMLLGIETPLPKKELLLPGNNRKVYELSNVQ-- 58
Query: 70 DAGMYQCHVSADDDSAQMSAQVILGG--ELVEIASSNQVVVDVGHRIELHCRVS---PKR 124
+ C+ + D + + + E VE+ + VG + L C+V P+
Sbjct: 59 EDSQPMCYSNCPDGQSTAKTFLTVYWTPERVEL-APLPSWQPVGKNLTLRCQVEGGAPRA 117
Query: 125 LSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDES 184
+ L+ L+R + + +
Sbjct: 118 NLTVV-LLRGEKELKREPAV------------------------GEPAEVTTTVLVRRDH 152
Query: 185 DRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPC 244
++ CR L L + + + + + A + ++ D + C
Sbjct: 153 HG-ANFSCRTELDLRPQGL-ELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVC 210
Query: 245 SAQGN---PLPTIKWYKQDSPVE-ESDRIQRIGSSLSISHVEESDSGVWN--CVANNSEG 298
S G + D + S+ + V D G C
Sbjct: 211 SLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQ 270
Query: 299 QDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKDESVILPC 358
+ + + S V + V + C
Sbjct: 271 SQETLQTV-------------------------TIYSFPAPNVILTKPEVSEGTEVTVKC 305
Query: 359 SAQGNPLPTIK 369
A T+
Sbjct: 306 EAHPRAKVTLN 316
Score = 85.3 bits (210), Expect = 2e-18
Identities = 52/380 (13%), Positives = 101/380 (26%), Gaps = 86/380 (22%)
Query: 12 SIEMSPSGQVVVDVGHRIELHCRVS---PKRLSSAKAWLKDGLVLRRNSD-----EVLVL 63
+E++P VG + L C+V P+ + L+ L+R EV
Sbjct: 88 RVELAPLPSWQ-PVGKNLTLRCQVEGGAPRANLTVV-LLRGEKELKREPAVGEPAEVTTT 145
Query: 64 DRVQRED-AGMYQCHVSADDDSA-----QMSAQVILGGELVEIASSNQVV----VDVGHR 113
V+R+ + C D + ++ V A+ Q+V ++V +
Sbjct: 146 VLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQ 205
Query: 114 IELHCRVSPKRLSSAKA--WLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHML 171
+ C + S L +
Sbjct: 206 GTVVCSLDGLFPVSEAQVHLALGDQRLNPTVT-----------------------YGNDS 242
Query: 172 SSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRI 231
S + + E + + C + + + + S
Sbjct: 243 FSAKASVSVTAEDEGTQRLTCA----------VILGNQSQETLQTVTIYSFPAPNVILTK 292
Query: 232 LNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNC 291
V + V + C A T+ + L + E + ++C
Sbjct: 293 PEVSEGTEVTVKCEAHPRAKVTLNGVPAQPLGP--------RAQLLLKATPEDNGRSFSC 344
Query: 292 VANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILN--VK 349
A +IH+ + R+L ++ E+ N
Sbjct: 345 SATLEVAGQ---------------------LIHKNQTRELRVLYGPRLDERDCPGNWTWP 383
Query: 350 KDESVILPCSAQGNPLPTIK 369
++ C A GNPLP +K
Sbjct: 384 ENSQQTPMCQAWGNPLPELK 403
Score = 68.0 bits (165), Expect = 1e-12
Identities = 25/173 (14%), Positives = 49/173 (28%), Gaps = 28/173 (16%)
Query: 2 QLFIQVKSSLSIEMSPSGQVVVDVGHRIELHCRVSPK---RLSSAKAWLKDGLVLRRNSD 58
+ + S + + + + V G + + C P+ L+ + + R
Sbjct: 275 LQTVTIYSFPAPNVILT-KPEVSEGTEVTVKCEAHPRAKVTLN----GVPAQPLGPRAQ- 328
Query: 59 EVLVLDRVQREDAGMYQCHVS------ADDDSAQMSAQVILGGELVEIASSNQVVVDVGH 112
L+L ++ + C + + +V+ G L E
Sbjct: 329 --LLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENS 386
Query: 113 RIELHCRVS---PKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCH 162
+ C+ L LKDG + V R+ G Y C
Sbjct: 387 QQTPMCQAWGNPLPELK----CLKDG----TFPLPIGESVTVTRDLEGTYLCR 431
Score = 58.7 bits (141), Expect = 1e-09
Identities = 32/282 (11%), Positives = 70/282 (24%), Gaps = 67/282 (23%)
Query: 98 VEIASSNQVVVDVGHRIELHCRVS---PKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQRE 154
+ S ++V++ G + + C S P L K L+L N+ +V L VQ
Sbjct: 2 TSV-SPSKVILPRGGSVLVTCSTSCDQPMLLGIETPLPKKELLLPGNNRKVYELSNVQ-- 58
Query: 155 DAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLT 214
+ C+ + L ++ E
Sbjct: 59 EDSQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLP----------------------- 95
Query: 215 ENKRLLSAAKMFEKHRILNVKKDESVILPCSAQG-NPLP--TIKWYKQDSPVE-ESDRIQ 270
+++ L C +G P T+ + + ++ E +
Sbjct: 96 -----------------SWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGE 138
Query: 271 RIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKN 330
+ ++ + ++C G ++ Q
Sbjct: 139 PAEVTTTVLVRRDHHGANFSCRTELDLR----------PQGLELFENTSAPYQLQTFVLP 188
Query: 331 KRLLSAAKMFEKHRILNVKKDESVILPCSAQG-NPLPTIKYR 371
++ D + CS G P+ +
Sbjct: 189 ATPPQLVSPR------VLEVDTQGTVVCSLDGLFPVSEAQVH 224
Score = 43.7 bits (102), Expect = 6e-05
Identities = 14/83 (16%), Positives = 19/83 (22%), Gaps = 11/83 (13%)
Query: 13 IEMSPSGQVVVDVGHRIELHCRVS---PKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQRE 69
E G + C+ L LKDG + V R+
Sbjct: 372 DERDCPGNWTWPENSQQTPMCQAWGNPLPELK----CLKDG----TFPLPIGESVTVTRD 423
Query: 70 DAGMYQCHVSADDDSAQMSAQVI 92
G Y C + V
Sbjct: 424 LEGTYLCRARSTQGEVTREVTVN 446
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular
adhesion, ligand-independent DIME mutational analysis,
transferase; HET: EPE; 1.96A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.4
Length = 182
Score = 91.0 bits (226), Expect = 6e-22
Identities = 35/146 (23%), Positives = 51/146 (34%), Gaps = 33/146 (22%)
Query: 232 LNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI------GSSLSISHVEESD 285
L V + + V L CS +G P I+W K + V+ D++ LS+ VE SD
Sbjct: 12 LTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSD 71
Query: 286 SGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKH-R 344
+G + C + + Q L + V F +
Sbjct: 72 AGRYWCQVEDGGETEISQ--------------PVWLTVEGVPF-----------FTVEPK 106
Query: 345 ILNVKKDESVILPCSAQGNPLP-TIK 369
L V + L C A G P P TI
Sbjct: 107 DLAVPPNAPFQLSCEAVGPPEPVTIV 132
Score = 89.1 bits (221), Expect = 3e-21
Identities = 36/176 (20%), Positives = 61/176 (34%), Gaps = 36/176 (20%)
Query: 9 SSLSIEMSPSGQVVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRNSDE------ 59
+ L + +P ++ V G ++L+C V + + W+KDG V++
Sbjct: 1 AGLKLMGAPV-KLTVSQGQPVKLNCSVEGMEEPDIQ----WVKDGAVVQNLDQLYIPVSE 55
Query: 60 -----VLVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGELVEIASS-----NQVVVD 109
L L V+R DAG Y C V ++ S V L VE + V
Sbjct: 56 QHWIGFLSLKSVERSDAGRYWCQVEDGGETEI-SQPVWL---TVEGVPFFTVEPKDLAVP 111
Query: 110 VGHRIELHCRVS----PKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQC 161
+L C P + W + + + VL+ + M+ C
Sbjct: 112 PNAPFQLSCEAVGPPEPVTIV----WWRGTTKIGGPAPSPSVLNVTGVTQSTMFSC 163
Score = 84.8 bits (210), Expect = 9e-20
Identities = 43/210 (20%), Positives = 70/210 (33%), Gaps = 64/210 (30%)
Query: 106 VVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRNSDE-----------VLVLDRV 151
+ V G ++L+C V + + W+KDG V++ L L V
Sbjct: 12 LTVSQGQPVKLNCSVEGMEEPDIQ----WVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSV 67
Query: 152 QREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRL 211
+R DAG Y C +EDG I V L+V
Sbjct: 68 ERSDAGRYWCQVEDG------GETEISQPVW---------------------LTVE---- 96
Query: 212 SLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLP-TIKWYKQDSPVEESDRIQ 270
+ + L V + L C A G P P TI W++ + +
Sbjct: 97 ---------GVPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAP-- 145
Query: 271 RIGSSLSISHVEESDSGVWNCVANNSEGQD 300
S ++ + S +++C A+N +G
Sbjct: 146 ---SPSVLNVTGVTQSTMFSCEAHNLKGLA 172
Score = 54.8 bits (132), Expect = 4e-09
Identities = 11/79 (13%), Positives = 23/79 (29%), Gaps = 9/79 (11%)
Query: 5 IQVKSSLSIEMSPSGQVVVDVGHRIELHCRVS----PKRLSSAKAWLKDGLVLRRNSDEV 60
+ V+ + P + V +L C P + W + + +
Sbjct: 93 LTVEGVPFFTVEPK-DLAVPPNAPFQLSCEAVGPPEPVTIV----WWRGTTKIGGPAPSP 147
Query: 61 LVLDRVQREDAGMYQCHVS 79
VL+ + M+ C
Sbjct: 148 SVLNVTGVTQSTMFSCEAH 166
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor,
CD32, immunoglobulin superfamily, low responder
polymorphism, cell membrane; HET: NAG; 1.50A {Homo
sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C*
2fcb_A
Length = 170
Score = 89.9 bits (223), Expect = 1e-21
Identities = 22/150 (14%), Positives = 51/150 (34%), Gaps = 6/150 (4%)
Query: 13 IEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAG 72
+++ P V+ + L C+ + S + W +G ++ ++ + D+G
Sbjct: 7 LKLEPPWINVL-QEDSVTLTCQGARSPESDSIQWFHNGNLIPTHTQP-SYRFKANNNDSG 64
Query: 73 MYQCHVSADDDSAQMSAQVILGGELVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWL 132
Y C S + V+ + + + G I L C + +
Sbjct: 65 EYTCQTGQTSLSDPVHLTVL---FEWLVLQTPHLEFQEGETIMLRCHSWKDKPLVKVTFF 121
Query: 133 KDGLVLR-RNSDEVLVLDRVQREDAGMYQC 161
++G + + D + + +G Y C
Sbjct: 122 QNGKSQKFSHLDPTFSIPQANHSHSGDYHC 151
Score = 76.0 bits (187), Expect = 1e-16
Identities = 29/203 (14%), Positives = 59/203 (29%), Gaps = 50/203 (24%)
Query: 98 VEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAG 157
V + V + L C+ + S + W +G ++ ++ + D+G
Sbjct: 6 VLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHTQP-SYRFKANNNDSG 64
Query: 158 MYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENK 217
Y C Q ++ L+V L L
Sbjct: 65 EYTC------------------QTGQTSLSDPVH------------LTVLFEWLVLQTPH 94
Query: 218 RLLSAAKMFEKHRILNVKKDESVILPCSAQGN-PLPTIKWYKQDSPVEESDRIQRIGSSL 276
++ E+++L C + + PL + +++ + S +
Sbjct: 95 L--------------EFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKFSHL----DPTF 136
Query: 277 SISHVEESDSGVWNCVANNSEGQ 299
SI S SG ++C N
Sbjct: 137 SIPQANHSHSGDYHCTGNIGYTL 159
Score = 59.1 bits (143), Expect = 9e-11
Identities = 21/140 (15%), Positives = 47/140 (33%), Gaps = 36/140 (25%)
Query: 233 NVKKDESVILPCSAQGNPLP-TIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNC 291
NV +++SV L C +P +I+W+ + + + +DSG + C
Sbjct: 15 NVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHTQ------PSYRFKANNNDSGEYTC 68
Query: 292 VANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKD 351
+ D + L + + L++ ++
Sbjct: 69 QTGQTSLSDPVHLTVLFEW----------LVLQTPHL------------------EFQEG 100
Query: 352 ESVILPCSAQGNPLPTIKYR 371
E+++L C + + P +K
Sbjct: 101 ETIMLRCHSWKDK-PLVKVT 119
Score = 52.9 bits (127), Expect = 1e-08
Identities = 15/107 (14%), Positives = 31/107 (28%), Gaps = 19/107 (17%)
Query: 5 IQVKSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLR-RNSDEVLVL 63
+ V + +P + G I L C + + ++G + + D +
Sbjct: 81 LTVLFEWLVLQTPHLEFQE--GETIMLRCHSWKDKPLVKVTFFQNGKSQKFSHLDPTFSI 138
Query: 64 DRVQREDAGMYQCHVSADDDSAQMSAQVILGGELVEIASSNQVVVDV 110
+ +G Y C + + SS V + V
Sbjct: 139 PQANHSHSGDYHC-----------TGNIGYTLF-----SSKPVTITV 169
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein
complex, receptor tyrosine kinas binding, immunoglobulin
domain, kinase, membrane, nucleotid binding; HET: NAG;
2.10A {Homo sapiens}
Length = 241
Score = 91.5 bits (227), Expect = 1e-21
Identities = 31/145 (21%), Positives = 44/145 (30%), Gaps = 25/145 (17%)
Query: 230 RILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI-----GSSLSISHVEES 284
++L V +V C A GNP P+I W K RI I SL + V S
Sbjct: 23 KLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPS 82
Query: 285 DSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHR 344
D G + CV N G + + L + + L +
Sbjct: 83 DRGNYTCVVENKFGSIR---------------QTYTLDVLERSPHRPILQA-----GLPA 122
Query: 345 ILNVKKDESVILPCSAQGNPLPTIK 369
V C + P I+
Sbjct: 123 NQTAVLGSDVEFHCKVYSDAQPHIQ 147
Score = 80.8 bits (199), Expect = 8e-18
Identities = 38/181 (20%), Positives = 59/181 (32%), Gaps = 44/181 (24%)
Query: 21 VVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLR----------RNSDEVLVLDRVQ 67
+ V + + C + P +S WLK+G R R+ LV++ V
Sbjct: 25 LAVPAANTVRFRCPAAGNPTPSIS----WLKNGREFRGEHRIGGIKLRHQQWSLVMESVV 80
Query: 68 REDAGMYQCHVSADDDSAQMSAQVILGGE------LVEIASSNQVVVDVGHRIELHCRVS 121
D G Y C V S + + + + L +NQ V +G +E HC+V
Sbjct: 81 PSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAV-LGSDVEFHCKVY 139
Query: 122 --PK------------------RLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQC 161
+ + LK + +D L L V D G Y C
Sbjct: 140 SDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLC 199
Query: 162 H 162
Sbjct: 200 R 200
Score = 80.0 bits (197), Expect = 1e-17
Identities = 40/235 (17%), Positives = 65/235 (27%), Gaps = 71/235 (30%)
Query: 106 VVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLR----------RNSDEVLVLDRVQ 152
+ V + + C + P +S WLK+G R R+ LV++ V
Sbjct: 25 LAVPAANTVRFRCPAAGNPTPSIS----WLKNGREFRGEHRIGGIKLRHQQWSLVMESVV 80
Query: 153 REDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLS 212
D G Y C +E+ + + L V E +R G+ + G
Sbjct: 81 PSDRGNYTCVVENKFGSIRQTYTL---DVLERSPHRPILQAGLPANQ-----TAVLG--- 129
Query: 213 LTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSP---------- 262
V C + P I+W K
Sbjct: 130 -------------------------SDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGT 164
Query: 263 -----VEESDRIQRIG-SSLSISHVEESDSGVWNCVANNSEGQD--KMQLFIQYA 309
++ L +++V E D G + C A N G L +
Sbjct: 165 PYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHGP 219
Score = 44.5 bits (105), Expect = 2e-05
Identities = 18/121 (14%), Positives = 36/121 (29%), Gaps = 24/121 (19%)
Query: 21 VVVDVGHRIELHCRVS--PK------------------RLSSAKAWLKDGLVLRRNSDEV 60
+G +E HC+V + + LK + +D
Sbjct: 124 QTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVR 183
Query: 61 LVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGELVEIASSNQVVVDVGHRIELHCRV 120
L L V D G Y C + A+ + + + ++ + +V+ +H
Sbjct: 184 LRLANVSERDGGEYLCRATNFIGVAEKAFWLS----VHGPRAAEEELVEADEAGSVHHHH 239
Query: 121 S 121
Sbjct: 240 H 240
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta
sandwich, immunoglobulin-like, immune system receptor;
1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A
1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Length = 175
Score = 89.5 bits (222), Expect = 2e-21
Identities = 27/167 (16%), Positives = 61/167 (36%), Gaps = 8/167 (4%)
Query: 8 KSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQ 67
K+ + + P V+ + L C+ + ++ W + ++ + +D
Sbjct: 7 KAVVFL--EPQWYSVL-EKDSVTLKCQGAYSPEDNSTQWFHNESLISSQASS-YFIDAAT 62
Query: 68 REDAGMYQCHVSADDDSAQMSAQVILGGELVEIASSNQVVVDVGHRIELHCRVSPKRLSS 127
D+G Y+C + S + +V +G L++ V I L C
Sbjct: 63 VNDSGEYRCQTNLSTLSDPVQLEVHIGWLLLQAPRW---VFKEEDPIHLRCHSWKNTALH 119
Query: 128 AKAWLKDGLVLR-RNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSS 173
+L++G + + + + + +D+G Y C G ++ S
Sbjct: 120 KVTYLQNGKDRKYFHHNSDFHIPKATLKDSGSYFCRGLVGSKNVSSE 166
Score = 75.3 bits (185), Expect = 2e-16
Identities = 29/212 (13%), Positives = 58/212 (27%), Gaps = 53/212 (25%)
Query: 102 SSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQC 161
V + L C+ + ++ W + ++ + +D D+G Y+C
Sbjct: 13 EPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQASS-YFIDAATVNDSGEYRC 71
Query: 162 HIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLS 221
SD + L V+ G L L + +
Sbjct: 72 QTNLSTL---------------SDPVQ---------------LEVHIGWLLLQAPRWV-- 99
Query: 222 AAKMFEKHRILNVKKDESVILPCSAQGN-PLPTIKWYKQDSPVEESDRIQRIGSSLSISH 280
K+++ + L C + N L + + + + S I
Sbjct: 100 ------------FKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYFHH----NSDFHIPK 143
Query: 281 VEESDSGVWNCVANNSEGQ---DKMQLFIQYA 309
DSG + C + + + I A
Sbjct: 144 ATLKDSGSYFCRGLVGSKNVSSETVNITITQA 175
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit;
immunoglobulin fold, glycoprotein, IGE-binding Pro
immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP:
b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A*
1j88_A* 1j89_A* 1j87_A*
Length = 176
Score = 89.6 bits (222), Expect = 2e-21
Identities = 31/163 (19%), Positives = 62/163 (38%), Gaps = 6/163 (3%)
Query: 12 SIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDA 71
+ ++P + G + L C + S+ W +G + + L + + ED+
Sbjct: 6 KVSLNPPWNRIF-KGENVTLTCNGNNFFEVSSTKWFHNGSLSEETNSS-LNIVNAKFEDS 63
Query: 72 GMYQCHVSADDDSAQMSAQVILGGELVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAW 131
G Y+C ++S + +V L++ ++ VV G + L C +
Sbjct: 64 GEYKCQHQQVNESEPVYLEVFSDWLLLQASAE---VVMEGQPLFLRCHGWRNWDVYKVIY 120
Query: 132 LKDGLVLR-RNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSS 173
KDG L+ + + + ED+G Y C + + S
Sbjct: 121 YKDGEALKYWYENHNISITNATVEDSGTYYCTGKVWQLDYESE 163
Score = 71.9 bits (176), Expect = 3e-15
Identities = 31/214 (14%), Positives = 65/214 (30%), Gaps = 53/214 (24%)
Query: 100 IASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMY 159
+ + G + L C + S+ W +G + + L + + ED+G Y
Sbjct: 8 SLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEETNSS-LNIVNAKFEDSGEY 66
Query: 160 QCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRL 219
+C + +ES+ L V L L +
Sbjct: 67 KCQHQQV---------------NESEPVY---------------LEVFSDWLLLQASAE- 95
Query: 220 LSAAKMFEKHRILNVKKDESVILPCSAQGN-PLPTIKWYKQDSPVEESDRIQRIGSSLSI 278
V + + + L C N + + +YK ++ ++SI
Sbjct: 96 -------------VVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWYE----NHNISI 138
Query: 279 SHVEESDSGVWNCVANNSEGQ---DKMQLFIQYA 309
++ DSG + C + + + + + A
Sbjct: 139 TNATVEDSGTYYCTGKVWQLDYESEPLNITVIKA 172
Score = 59.1 bits (143), Expect = 1e-10
Identities = 26/140 (18%), Positives = 45/140 (32%), Gaps = 36/140 (25%)
Query: 233 NVKKDESVILPCSAQGNPLP-TIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNC 291
+ K E+V L C+ + KW+ S EE++ SSL+I + + DSG + C
Sbjct: 15 RIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEETN------SSLNIVNAKFEDSGEYKC 68
Query: 292 VANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKD 351
+ + L + L++ E V +
Sbjct: 69 QHQQVNESEPVYLEVFSD----------WLLLQASAE------------------VVMEG 100
Query: 352 ESVILPCSAQGNPLPTIKYR 371
+ + L C N K
Sbjct: 101 QPLFLRCHGWRNW-DVYKVI 119
>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage
capsid decorative protein, interaction with bacteria;
1.95A {Enterobacteria phage RB49}
Length = 304
Score = 92.2 bits (228), Expect = 2e-21
Identities = 51/316 (16%), Positives = 93/316 (29%), Gaps = 62/316 (19%)
Query: 12 SIEMSPSGQVVVDVGHRIELHCRVS---PKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQR 68
++ + + + + G L V+ P + W KD N+ L +
Sbjct: 4 TVSIQSNKRCFL-AGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHE-NNTATLTVADATS 61
Query: 69 EDAGMYQCHVSADDDSAQMSAQVILGGEL---VEIASSNQVVVDVGHRIELHCRVS---- 121
E+AG Y+ V D + ++V L E V I V +ELH V
Sbjct: 62 ENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQTDVELHATVKFSGG 121
Query: 122 ---PKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELII 178
+W K V+ ++ + + + + G+Y + +S I
Sbjct: 122 KTPADNYELHYSWSKGEDVI--DTTQDITIQEFTADKNGVYTVKVWGESEDSAASASTKI 179
Query: 179 HQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDE 238
+ V++ S +SL
Sbjct: 180 MLATMN----------VDQDVVESKTVALGNEISLNYVV--------------------- 208
Query: 239 SVILPCSAQGNPLPTIK--WYKQ-DSPVEESDRIQRIGSS-----------LSISHVEES 284
S + + G P TIK WY Q + + + +G + L
Sbjct: 209 SEDIVGDSSGMPNLTIKYNWYLQREGQLSPTLIGSEVGEALEGFSITPDGHLFKESATYD 268
Query: 285 DSGVWNCVANNSEGQD 300
D+ + CVA + +
Sbjct: 269 DTAKFWCVAKLYQQIE 284
Score = 65.2 bits (158), Expect = 4e-12
Identities = 37/284 (13%), Positives = 74/284 (26%), Gaps = 73/284 (25%)
Query: 98 VEIASSNQVVVDVGHRIELHCRVS---PKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQRE 154
V I S+ + + G L V+ P + W KD N+ L + E
Sbjct: 5 VSIQSNKRCFL-AGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHE-NNTATLTVADATSE 62
Query: 155 DAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLT 214
+AG Y+ ++D E+ + + + ++ +
Sbjct: 63 NAGSYKVTVQDTDTMTSVESEVFL----------------MEEAELIVNITEPQHFY--- 103
Query: 215 ENKRLLSAAKMFEKHRILNVKKDESVILPCSAQ---GNPLP-----TIKWYKQDSPVEES 266
V V L + + G W K + ++ +
Sbjct: 104 -------------------VSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVIDTT 144
Query: 267 DRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQV 326
++I +GV+ +S I
Sbjct: 145 -------QDITIQEFTADKNGVYTVKVWGESEDSA---------------ASASTKIMLA 182
Query: 327 DEKNKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKY 370
+ + +K +++ S + + G P TIKY
Sbjct: 183 TMNVDQDVVESKTVALGNEISLNYVVSEDIVGDSSGMPNLTIKY 226
Score = 31.0 bits (69), Expect = 0.56
Identities = 18/123 (14%), Positives = 41/123 (33%), Gaps = 35/123 (28%)
Query: 7 VKSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKA-----------WLKDGLV--- 52
+ ++++++ V +G+ I L+ VS + + ++G +
Sbjct: 180 MLATMNVDQDVVESKTVALGNEISLNYVVSEDIVGDSSGMPNLTIKYNWYLQREGQLSPT 239
Query: 53 ------------LRRNSDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGELVEI 100
D L + +D + C A++ Q+ E VE+
Sbjct: 240 LIGSEVGEALEGFSITPDGHLFKESATYDDTAKFWC-------VAKLYQQIED--ETVEV 290
Query: 101 ASS 103
A+S
Sbjct: 291 AAS 293
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold,
glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4
b.1.1.4 PDB: 2ncm_A 3ncm_A
Length = 191
Score = 88.7 bits (220), Expect = 5e-21
Identities = 37/208 (17%), Positives = 70/208 (33%), Gaps = 36/208 (17%)
Query: 98 VEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLK-DGLVLRRNSDEVLVLDRVQREDA 156
V+I S + VG C+V+ +W +G L N + V+
Sbjct: 5 VDIVPSQGEIS-VGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVV-------- 55
Query: 157 GMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTEN 216
++ S L I+ + D Y+C + S +VN +
Sbjct: 56 -----------WNDDDSSTLTIYNANIDDAGI-YKCVVTAEDGTQSEATVN-----VK-- 96
Query: 217 KRLLSAAKMFEKH-RILNVKKDESVILPCSAQGNPLPTIKWYKQDSPV--EESDRIQRIG 273
+ MF+ K+ E ++ C + PTI W + V ++ R +
Sbjct: 97 ---IFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLS 153
Query: 274 S-SLSISHVEESDSGVWNCVANNSEGQD 300
+ L I ++++D G + C +
Sbjct: 154 NNYLQIRGIKKTDEGTYRCEGRILARGE 181
Score = 83.3 bits (206), Expect = 4e-19
Identities = 25/145 (17%), Positives = 47/145 (32%), Gaps = 34/145 (23%)
Query: 234 VKKDESVILPCSAQGNPL-PTIKWYKQDS-PVEESD-RIQRI-----GSSLSISHVEESD 285
+ ES C G+ I W+ + + + RI + S+L+I + D
Sbjct: 14 ISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDD 73
Query: 286 SGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKH-R 344
+G++ CV +G ++ + I MF+
Sbjct: 74 AGIYKCVVTAEDGTQSE--------------ATVNVKIF-----------QKLMFKNAPT 108
Query: 345 ILNVKKDESVILPCSAQGNPLPTIK 369
K+ E ++ C + PTI
Sbjct: 109 PQEFKEGEDAVIVCDVVSSLPPTII 133
Score = 79.1 bits (195), Expect = 1e-17
Identities = 33/175 (18%), Positives = 67/175 (38%), Gaps = 29/175 (16%)
Query: 11 LSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDG------------LVLRRNSD 58
L +++ PS Q + VG C+V+ +W +V +
Sbjct: 3 LQVDIVPS-QGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDS 61
Query: 59 EVLVLDRVQREDAGMYQCHVS-ADDDSAQMSAQVILGGELVEIASSNQVVVDVGHRIELH 117
L + +DAG+Y+C V+ D ++ + V + +L+ + G +
Sbjct: 62 STLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIV 121
Query: 118 CRV--SPK-RLSSAKAWLKDG--LVLRRN------SDEVLVLDRVQREDAGMYQC 161
C V S + W G ++L+++ S+ L + +++ D G Y+C
Sbjct: 122 CDVVSSLPPTII----WKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRC 172
Score = 52.1 bits (125), Expect = 3e-08
Identities = 20/101 (19%), Positives = 41/101 (40%), Gaps = 18/101 (17%)
Query: 5 IQVKSSLSIEMSPSGQVVVDVGHRIELHCRV--SPK-RLSSAKAWLKDG--LVLRRN--- 56
+++ L + +P+ Q G + C V S + W G ++L+++
Sbjct: 95 VKIFQKLMFKNAPTPQEFK-EGEDAVIVCDVVSSLPPTII----WKHKGRDVILKKDVRF 149
Query: 57 ---SDEVLVLDRVQREDAGMYQC--HVSADDDSAQMSAQVI 92
S+ L + +++ D G Y+C + A + QVI
Sbjct: 150 IVLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVI 190
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A
{Homo sapiens}
Length = 207
Score = 88.1 bits (218), Expect = 1e-20
Identities = 30/213 (14%), Positives = 73/213 (34%), Gaps = 37/213 (17%)
Query: 106 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEV-----------LVLDRVQRE 154
V + ++ + ++ ++ + + + ++++Q E
Sbjct: 12 VEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDE 71
Query: 155 DAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLT 214
D G Y ++DGK S+ L+ + + +Q + +
Sbjct: 72 DEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRK---------------- 115
Query: 215 ENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPT-IKWYKQDSPVEESDRIQRIG 273
F ++ V + +V+L C T I WYK + + ++
Sbjct: 116 -------QGPHFVEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKD 168
Query: 274 --SSLSISHVEESDSGVWNCVANNSEGQDKMQL 304
+L I+ + D+G++ + + G+DK +L
Sbjct: 169 GICTLLITEFSKKDAGIYEVILKDDRGKDKSRL 201
Score = 78.4 bits (193), Expect = 3e-17
Identities = 11/140 (7%), Positives = 43/140 (30%), Gaps = 13/140 (9%)
Query: 234 VKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGS------SLSISHVEESDSG 287
++K + + + + + + + + E + + + + +++ D G
Sbjct: 15 LEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEG 74
Query: 288 VWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILN 347
+ + + + + +L ++ + + F ++
Sbjct: 75 TYTFQLQDGKATNHSTV-------VLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWE 127
Query: 348 VKKDESVILPCSAQGNPLPT 367
V + +V+L C T
Sbjct: 128 VTGECNVLLKCKVANIKKET 147
Score = 63.0 bits (153), Expect = 8e-12
Identities = 21/194 (10%), Positives = 62/194 (31%), Gaps = 36/194 (18%)
Query: 21 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEV-----------LVLDRVQRE 69
V + ++ + ++ ++ + + + ++++Q E
Sbjct: 12 VEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDE 71
Query: 70 DAGMYQCHVSADDDSAQMSAQVI------------------LGGELVEIASSNQVVVDVG 111
D G Y + + + ++ + + V
Sbjct: 72 DEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGE 131
Query: 112 HRIELHCRVSPKRLSSAKAWLKDGLVLR-------RNSDEVLVLDRVQREDAGMYQCHIE 164
+ L C+V+ + + W KD + ++ L++ ++DAG+Y+ ++
Sbjct: 132 CNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILK 191
Query: 165 DGKYHMLSSGELII 178
D + S +L+
Sbjct: 192 DDRGKDKSRLKLVD 205
Score = 49.2 bits (117), Expect = 4e-07
Identities = 13/80 (16%), Positives = 32/80 (40%), Gaps = 7/80 (8%)
Query: 20 QVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLR-------RNSDEVLVLDRVQREDAG 72
V + L C+V+ + + W KD + ++ L++ ++DAG
Sbjct: 125 SWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAG 184
Query: 73 MYQCHVSADDDSAQMSAQVI 92
+Y+ + D + +++
Sbjct: 185 IYEVILKDDRGKDKSRLKLV 204
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling
protein/receptor, growth regulation/complex, vitamin
K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Length = 195
Score = 86.1 bits (213), Expect = 5e-20
Identities = 34/200 (17%), Positives = 63/200 (31%), Gaps = 36/200 (18%)
Query: 106 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIED 165
+ G L C++ + WL+DG +L + ED
Sbjct: 12 ITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVP------------LGED 59
Query: 166 GKYHMLSSGELIIHQVDESDRYRSYQCRGVNKL----TGASLLSVNRGRLSLTENKRLLS 221
+ + +L I + SD + YQC + + +
Sbjct: 60 EQDDWIVVSQLRITSLQLSDTGQ-YQCLVFLGHQTFVSQPGYVGLE-------------- 104
Query: 222 AAKMFEKH-RILNVKKDESVILPCSAQGNPLPT-IKWYKQDSPVEESDRIQRIGSSLSIS 279
F + V + L C AQG P P + W + P+ + SL +
Sbjct: 105 GLPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGHGP-QRSLHVP 163
Query: 280 HVEESDSGVWNCVANNSEGQ 299
+ + ++C A+N++G
Sbjct: 164 GLN--KTSSFSCEAHNAKGV 181
Score = 76.1 bits (187), Expect = 1e-16
Identities = 30/169 (17%), Positives = 44/169 (26%), Gaps = 29/169 (17%)
Query: 21 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDE------------------VLV 62
+ G L C++ + WL+DG +L L
Sbjct: 12 ITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLR 71
Query: 63 LDRVQREDAGMYQCHVSADDDSAQ-MSAQVILGGELVEIASSNQVVVDVGHRIELHCRVS 121
+ +Q D G YQC V + V L G + V L C+
Sbjct: 72 ITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPEDRTVAANTPFNLSCQAQ 131
Query: 122 ----PKRLSSAKAWLKDGLVLRRNSDEV--LVLDRVQREDAGMYQCHIE 164
P L WL+D + L L + C
Sbjct: 132 GPPEPVDLL----WLQDAVPLATAPGHGPQRSLHVPGLNKTSSFSCEAH 176
Score = 74.6 bits (183), Expect = 7e-16
Identities = 28/150 (18%), Positives = 44/150 (29%), Gaps = 42/150 (28%)
Query: 234 VKKDESVILPCSAQ--GNPLPTIKWYKQDSPVEESDRIQRI-------------GSSLSI 278
+ + L C Q G P P + W + +E +D Q S L I
Sbjct: 14 GARGLTGTLRCQLQVQGEP-PEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRI 72
Query: 279 SHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAK 338
+ ++ SD+G + C+ Q G + +
Sbjct: 73 TSLQLSDTGQYQCLVFLGHQTFVSQ--------------PGYVGLE-----------GLP 107
Query: 339 MFEKH-RILNVKKDESVILPCSAQGNPLPT 367
F + V + L C AQG P P
Sbjct: 108 YFLEEPEDRTVAANTPFNLSCQAQGPPEPV 137
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in
U twenty twenty, neurogenesis, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 83.7 bits (207), Expect = 5e-20
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 234 VKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI--GSSLSISHVEESDSGVWNC 291
V D + +L C A G+P+PTI W K V D + L I + + D+G + C
Sbjct: 20 VAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGVLQIRYAKLGDTGRYTC 79
Query: 292 VANNSEGQD 300
+A+ G+
Sbjct: 80 IASTPSGEA 88
Score = 57.1 bits (138), Expect = 2e-10
Identities = 20/90 (22%), Positives = 29/90 (32%), Gaps = 15/90 (16%)
Query: 12 SIEMSPSGQVVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRNSDEVLVLD---- 64
I P V V L C + P + W KDG+++ + L+
Sbjct: 10 VIRQGPV-NQTVAVDGTFVLSCVATGSPVPTIL----WRKDGVLVSTQDSRIKQLENGVL 64
Query: 65 ---RVQREDAGMYQCHVSADDDSAQMSAQV 91
+ D G Y C S A SA +
Sbjct: 65 QIRYAKLGDTGRYTCIASTPSGEATWSAYI 94
Score = 51.3 bits (123), Expect = 1e-08
Identities = 14/67 (20%), Positives = 22/67 (32%), Gaps = 14/67 (20%)
Query: 106 VVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRNSDEVLVLD-------RVQRED 155
V V L C + P + W KDG+++ + L+ + D
Sbjct: 18 QTVAVDGTFVLSCVATGSPVPTIL----WRKDGVLVSTQDSRIKQLENGVLQIRYAKLGD 73
Query: 156 AGMYQCH 162
G Y C
Sbjct: 74 TGRYTCI 80
Score = 36.7 bits (85), Expect = 0.002
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 348 VKKDESVILPCSAQGNPLPTIK 369
V D + +L C A G+P+PTI
Sbjct: 20 VAVDGTFVLSCVATGSPVPTIL 41
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion;
2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 184
Score = 85.5 bits (211), Expect = 5e-20
Identities = 37/220 (16%), Positives = 74/220 (33%), Gaps = 63/220 (28%)
Query: 107 VVDVGHRIELHCRV--SPKRLSSAKAWLKDGLVLR--RNSDEVLVLDRVQREDAGMYQCH 162
V D+G +I L C + S ++ + WLK G+VL+ + + G Y C
Sbjct: 9 VEDLGSKILLTCSLNDSATEVTGHR-WLKGGVVLKEDALPGQKTEFKVDSDDQWGEYSC- 66
Query: 163 IEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSA 222
+ + G + + ++
Sbjct: 67 ------------------------------VFLPEPMGTANIQLH-------------GP 83
Query: 223 AKMFEKHRILNVKKDESVILPCSAQGNPLPT-IKWYKQDSPVEE------SDRIQRIG-- 273
++ ++ + E+ +L C ++ P T WYK ++ R
Sbjct: 84 PRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQ 143
Query: 274 --SSLSISHVE-ESDSGVWNCVANNSEGQDK--MQLFIQY 308
S L I ++ E+D G + C +S+G D+ + L ++
Sbjct: 144 GRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRVRS 183
Score = 74.7 bits (183), Expect = 5e-16
Identities = 34/168 (20%), Positives = 59/168 (35%), Gaps = 27/168 (16%)
Query: 18 SGQV---VVDVGHRIELHCRV--SPKRLSSAKAWLKDGLVLR--RNSDEVLVLDRVQRED 70
+G V V D+G +I L C + S ++ + WLK G+VL+ + +
Sbjct: 2 AGTVFTTVEDLGSKILLTCSLNDSATEVTGHR-WLKGGVVLKEDALPGQKTEFKVDSDDQ 60
Query: 71 AGMYQCHVSADDDSAQMSAQVILGGELVEIASSNQVVVDVGHRIELHCRVS----PKRLS 126
G Y C +A + L G A + ++ G L C+ +
Sbjct: 61 WGEYSCVFL---PEPMGTANIQLHGPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWA 117
Query: 127 SAKAWLKDGLVLRRNSDE-----------VLVLDRVQRE-DAGMYQCH 162
K + L S+ L ++ + E D G Y+C+
Sbjct: 118 WYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCN 165
Score = 65.8 bits (160), Expect = 6e-13
Identities = 16/136 (11%), Positives = 37/136 (27%), Gaps = 33/136 (24%)
Query: 234 VKKDESVILPCSAQGNPLPTI--KWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNC 291
++L CS + +W K ++E G + G ++C
Sbjct: 10 EDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALP---GQKTEFKVDSDDQWGEYSC 66
Query: 292 VANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKD 351
V + + +H ++ ++ +
Sbjct: 67 VFLPEPMG------------------TANIQLH----------GPPRVKAVKSSEHINEG 98
Query: 352 ESVILPCSAQGNPLPT 367
E+ +L C ++ P T
Sbjct: 99 ETAMLVCKSESVPPVT 114
Score = 36.5 bits (84), Expect = 0.005
Identities = 17/107 (15%), Positives = 34/107 (31%), Gaps = 17/107 (15%)
Query: 1 MQLFIQVKSSLSIEMSPSGQVVVDVGHRIELHCRVS----PKRLSSAKAWLKDGLVLRRN 56
IQ+ ++ S + + G L C+ + K + L
Sbjct: 74 GTANIQLHGPPRVKAVKSSEHIN-EGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNG 132
Query: 57 SDE-----------VLVLDRVQRE-DAGMYQCHVSADDDSAQMSAQV 91
S+ L ++ + E D G Y+C+ ++ S Q +
Sbjct: 133 SESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITL 179
Score = 28.1 bits (62), Expect = 3.5
Identities = 4/24 (16%), Positives = 8/24 (33%)
Query: 348 VKKDESVILPCSAQGNPLPTIKYR 371
++L CS + +R
Sbjct: 10 EDLGSKILLTCSLNDSATEVTGHR 33
>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding,
disease MU ectodermal dysplasia, glycoprotein,
heparin-binding, immuno domain, kinase; 1.96A {Homo
sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A
Length = 100
Score = 82.9 bits (205), Expect = 6e-20
Identities = 24/75 (32%), Positives = 33/75 (44%), Gaps = 5/75 (6%)
Query: 230 RILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI-----GSSLSISHVEES 284
R+ V +V C A GNP+PT++W K ++ RI SL + V S
Sbjct: 16 RLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPS 75
Query: 285 DSGVWNCVANNSEGQ 299
D G + CV N G
Sbjct: 76 DKGNYTCVVENEYGS 90
Score = 46.7 bits (111), Expect = 4e-07
Identities = 15/90 (16%), Positives = 31/90 (34%), Gaps = 12/90 (13%)
Query: 13 IEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDE----------VLV 62
+M V + ++ C + + + WLK+G ++ L+
Sbjct: 11 EKMEKRLHAVP-AANTVKFRCPAGGNPMPTMR-WLKNGKEFKQEHRIGGYKVRNQHWSLI 68
Query: 63 LDRVQREDAGMYQCHVSADDDSAQMSAQVI 92
++ V D G Y C V + S + +
Sbjct: 69 MESVVPSDKGNYTCVVENEYGSINHTYHLD 98
Score = 44.7 bits (106), Expect = 3e-06
Identities = 12/66 (18%), Positives = 24/66 (36%), Gaps = 11/66 (16%)
Query: 106 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDE----------VLVLDRVQRED 155
V + ++ C + + + WLK+G ++ L+++ V D
Sbjct: 18 HAVPAANTVKFRCPAGGNPMPTMR-WLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSD 76
Query: 156 AGMYQC 161
G Y C
Sbjct: 77 KGNYTC 82
Score = 35.1 bits (81), Expect = 0.006
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 344 RILNVKKDESVILPCSAQGNPLPTIK 369
R+ V +V C A GNP+PT++
Sbjct: 16 RLHAVPAANTVKFRCPAGGNPMPTMR 41
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody,
immune system; HET: NAG BMA MAN FUC; 2.20A {Homo
sapiens} PDB: 3sgk_C*
Length = 204
Score = 86.1 bits (213), Expect = 6e-20
Identities = 27/167 (16%), Positives = 61/167 (36%), Gaps = 8/167 (4%)
Query: 8 KSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQ 67
K+ + + P V++ + L C+ + + W + ++ + +D
Sbjct: 7 KAVVFL--EPQWYRVLE-KDSVTLKCQGAYSPEDQSTQWFHNESLISSQASS-YFIDAAT 62
Query: 68 REDAGMYQCHVSADDDSAQMSAQVILGGELVEIASSNQVVVDVGHRIELHCRVSPKRLSS 127
+D+G Y+C S + +V +G L++ V I L C
Sbjct: 63 VDDSGEYRCQTQLSTLSDPVQLEVHIGWLLLQAPRW---VFKEEDPIHLRCHSWKNTALH 119
Query: 128 AKAWLKDGLVLR-RNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSS 173
+L++G + + + + + +D+G Y C G ++ S
Sbjct: 120 KVTYLQNGKGRKYFHHNSDFYIPKATLKDSGSYFCRGLVGSKNVSSE 166
Score = 69.1 bits (169), Expect = 5e-14
Identities = 29/215 (13%), Positives = 58/215 (26%), Gaps = 53/215 (24%)
Query: 100 IASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMY 159
V + L C+ + + W + ++ + +D +D+G Y
Sbjct: 11 FLEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQASS-YFIDAATVDDSGEY 69
Query: 160 QCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRL 219
+C + SD + L V+ G L L +
Sbjct: 70 RCQTQLSTL---------------SDPVQ---------------LEVHIGWLLLQAPRW- 98
Query: 220 LSAAKMFEKHRILNVKKDESVILPCSAQGN-PLPTIKWYKQDSPVEESDRIQRIGSSLSI 278
K+++ + L C + N L + + + + S I
Sbjct: 99 -------------VFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKYFHH----NSDFYI 141
Query: 279 SHVEESDSGVWNCVANNSEGQ---DKMQLFIQYAH 310
DSG + C + +Q+ I
Sbjct: 142 PKATLKDSGSYFCRGLVGSKNVSSETVQITITQGL 176
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2,
angiogenesis, ATP-binding, developmental protein,
differentiation, glycoprotein; 2.70A {Homo sapiens}
Length = 108
Score = 83.2 bits (206), Expect = 6e-20
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 4/80 (5%)
Query: 234 VKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI--GSSLSISHVEESDSGVWNC 291
ES+ + C+A GNP P I W+K + + E I +L+I V + D G++ C
Sbjct: 22 TSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTC 81
Query: 292 VANNSEGQD--KMQLFIQYA 309
A + G + I+ A
Sbjct: 82 QACSVLGCAKVEAFFIIEGA 101
Score = 50.4 bits (121), Expect = 3e-08
Identities = 25/101 (24%), Positives = 44/101 (43%), Gaps = 15/101 (14%)
Query: 2 QLFIQVKSSLSIEMSPSGQVVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLR---- 54
QL + + + +I + Q +G IE+ C S P ++ W KD L
Sbjct: 2 QLTVLERVAPTITGNLENQTTS-IGESIEVSCTASGNPPPQIM----WFKDNETLVEDSG 56
Query: 55 ---RNSDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVI 92
++ + L + RV++ED G+Y C + A++ A I
Sbjct: 57 IVLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFI 97
Score = 46.9 bits (112), Expect = 5e-07
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 14/66 (21%)
Query: 106 VVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLR-------RNSDEVLVLDRVQRED 155
+G IE+ C S P ++ W KD L ++ + L + RV++ED
Sbjct: 20 QTTSIGESIEVSCTASGNPPPQIM----WFKDNETLVEDSGIVLKDGNRNLTIRRVRKED 75
Query: 156 AGMYQC 161
G+Y C
Sbjct: 76 EGLYTC 81
Score = 33.1 bits (76), Expect = 0.029
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 348 VKKDESVILPCSAQGNPLPTIK 369
ES+ + C+A GNP P I
Sbjct: 22 TSIGESIEVSCTASGNPPPQIM 43
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral
protein-immune system compl; HET: NAG SUC; 1.99A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B*
2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C*
3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A
3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Length = 184
Score = 85.0 bits (210), Expect = 7e-20
Identities = 36/203 (17%), Positives = 66/203 (32%), Gaps = 34/203 (16%)
Query: 106 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIED 165
V+ G +EL C S K+ W N ++L D
Sbjct: 5 VLGKKGDTVELTCTASQKKSIQF-HWKNS------NQIKILGNQGSFLTKGPSKLNDRAD 57
Query: 166 GKYHMLSSG--ELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAA 223
+ + G LII + D +Y C ++ V LT N
Sbjct: 58 SRRSLWDQGNFPLIIKNLKIEDS-DTYICEVEDQKE-----EVQLLVFGLTANSDT---- 107
Query: 224 KMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEE 283
++ + +S+ L + P+++ + G +LS+S +E
Sbjct: 108 ---------HLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQG------GKTLSVSQLEL 152
Query: 284 SDSGVWNCVANNSEGQDKMQLFI 306
DSG W C ++ + + ++ I
Sbjct: 153 QDSGTWTCTVLQNQKKVEFKIDI 175
Score = 66.9 bits (163), Expect = 3e-13
Identities = 17/155 (10%), Positives = 41/155 (26%), Gaps = 54/155 (34%)
Query: 238 ESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI---------------------GSSL 276
++V L C+A W + ++ + L
Sbjct: 11 DTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPL 70
Query: 277 SISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSA 336
I +++ DS + C + + + ++ +F S L+
Sbjct: 71 IIKNLKIEDSDTYICEVEDQKEEVQLLVF------GLTANSDTHLLQ------------- 111
Query: 337 AKMFEKHRILNVKKDESVILPCSAQGNPLPTIKYR 371
+S+ L + P+++ R
Sbjct: 112 --------------GQSLTLTLESPPGSSPSVQCR 132
Score = 66.5 bits (162), Expect = 3e-13
Identities = 25/184 (13%), Positives = 61/184 (33%), Gaps = 35/184 (19%)
Query: 21 VVVDVGHRIELHCRVSP--------KRLSSAKAWLKDGLVLRRNSDEV------------ 60
V+ G +EL C S K + K G L + ++
Sbjct: 5 VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWD 64
Query: 61 -----LVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGELVEIASSNQVVVDVGHRIE 115
L++ ++ ED+ Y C +D ++ V + +++ + G +
Sbjct: 65 QGNFPLIIKNLKIEDSDTYIC--EVEDQKEEVQLLVF------GLTANSDTHLLQGQSLT 116
Query: 116 LHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGE 175
L P S + + L + +++ +D+G + C + + + +
Sbjct: 117 LTLESPPGSSPSVQ-CRSPRGKNI-QGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKID 174
Query: 176 LIIH 179
+++
Sbjct: 175 IVVL 178
Score = 51.5 bits (123), Expect = 5e-08
Identities = 9/82 (10%), Positives = 26/82 (31%), Gaps = 4/82 (4%)
Query: 11 LSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQRED 70
+ + + G + L P S + + L + +++ +D
Sbjct: 99 FGLTANSD--THLLQGQSLTLTLESPPGSSPSVQ-CRSPRGKNI-QGGKTLSVSQLELQD 154
Query: 71 AGMYQCHVSADDDSAQMSAQVI 92
+G + C V + + ++
Sbjct: 155 SGTWTCTVLQNQKKVEFKIDIV 176
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor,
tight junction formation, immunoglobulin superfamily,
immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1
b.1.1.4 PDB: 3eoy_G
Length = 209
Score = 85.8 bits (212), Expect = 9e-20
Identities = 43/214 (20%), Positives = 71/214 (33%), Gaps = 49/214 (22%)
Query: 10 SLSIEMSPSGQVVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRN---------- 56
S+++ S +V + + ++L C S R+ W D R
Sbjct: 4 SVTVHSSEP-EVRIPENNPVKLSCAYSGFSSPRVE----WKFDQGDTTRLVCYNNKITAS 58
Query: 57 -------SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGELVEIA-----SSN 104
+ V RED G Y C VS + ++ +V L +V + +
Sbjct: 59 YEDRVTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKL---IVLVPPSKPTVNI 115
Query: 105 QVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNS----------------DEVLVL 148
+G+R L C S W KDG+V+ N LV
Sbjct: 116 PSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVF 175
Query: 149 DRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVD 182
D + D G Y C +G ++S + + V+
Sbjct: 176 DPLSASDTGEYSCEARNGYGTPMTSNAVRMEAVE 209
Score = 85.8 bits (212), Expect = 9e-20
Identities = 21/151 (13%), Positives = 46/151 (30%), Gaps = 36/151 (23%)
Query: 232 LNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEE------------SDRIQRIGSSLSIS 279
+ + ++ V L C+ G P ++W DR+ + + ++
Sbjct: 14 VRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFK 73
Query: 280 HVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKM 339
V D+G + C+ + G ++ ++ LI+
Sbjct: 74 SVTREDTGTYTCMVSEEGGNSYGEVKVK-------------LIVL----------VPPSK 110
Query: 340 FEKHRILNVKKDESVILPCSAQ-GNPLPTIK 369
+ + +L CS Q G+P
Sbjct: 111 PTVNIPSSATIGNRAVLTCSEQDGSPPSEYT 141
Score = 84.6 bits (209), Expect = 2e-19
Identities = 33/230 (14%), Positives = 63/230 (27%), Gaps = 43/230 (18%)
Query: 95 GELVEIASSNQVVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRNSDEVLVLDRV 151
G + +S +V + + ++L C S R+ W D
Sbjct: 3 GSVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVE----WKFDQ-------------GDT 45
Query: 152 QREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRL 211
R + + V D +Y C + + ++
Sbjct: 46 TRLVCYNNKITASYEDRVTFLPTGITFKSVTREDT-GTYTCMVSEEGGNS----YGEVKV 100
Query: 212 SLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQ-GNPLPTIKWYKQDSPVEESDRIQ 270
L L + + +L CS Q G+P W+K + + +
Sbjct: 101 KLIV----LVPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKST 156
Query: 271 RI-----------GSSLSISHVEESDSGVWNCVANNSEGQD--KMQLFIQ 307
R L + SD+G ++C A N G + ++
Sbjct: 157 RAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRME 206
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold,
transmembrane, MHC lipoprotein, polymorphism; 3.90A
{Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3
PDB: 1wip_A 1wiq_A 3t0e_E
Length = 363
Score = 86.8 bits (214), Expect = 3e-19
Identities = 36/203 (17%), Positives = 65/203 (32%), Gaps = 34/203 (16%)
Query: 106 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIED 165
V+ G +EL C S K+ W N ++L D
Sbjct: 4 VLGKKGDTVELTCTASQKKSIQF-HWKNS------NQIKILGNQGSFLTKGPSKLNDRAD 56
Query: 166 GKYHMLSSG--ELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAA 223
+ + G LII + D +Y C ++ LL S T
Sbjct: 57 SRRSLWDQGNFPLIIKNLKIEDS-DTYICEVEDQKEEVQLLVFGLTANSDTH-------- 107
Query: 224 KMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEE 283
+ + +S+ L + P+++ + G +LS+S +E
Sbjct: 108 ----------LLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQG------GKTLSVSQLEL 151
Query: 284 SDSGVWNCVANNSEGQDKMQLFI 306
DSG W C ++ + + ++ I
Sbjct: 152 QDSGTWTCTVLQNQKKVEFKIDI 174
Score = 86.0 bits (212), Expect = 7e-19
Identities = 46/384 (11%), Positives = 112/384 (29%), Gaps = 78/384 (20%)
Query: 21 VVVDVGHRIELHCRVSP--------KRLSSAKAWLKDGLVLRRNSDEV------------ 60
V+ G +EL C S K + K G L + ++
Sbjct: 4 VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWD 63
Query: 61 -----LVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGELVEIASSNQVVVDVGHRIE 115
L++ ++ ED+ Y C V + Q+ + +++ + G +
Sbjct: 64 QGNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLV--------FGLTANSDTHLLQGQSLT 115
Query: 116 LHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGE 175
L P S + + L + +++ +D+G + C + + + +
Sbjct: 116 LTLESPPGSSPSVQ-CRSPR-GKNIQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKID 173
Query: 176 LIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVK 235
+++ ++ +S++ G + K
Sbjct: 174 IVVLAFQKA----------------SSIVYKKEG-----------EQVEFSFPLAFTVEK 206
Query: 236 KDESVILPCSAQGNPLP----TIKWYKQDSPVEESDRIQRIGSS--------LSISHVEE 283
S L A+ T ++ V+ + ++ L + +
Sbjct: 207 LTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQY 266
Query: 284 SDSGVWNCVANNSEGQD--KMQLFIQYAHGKYHMLS--SGELIIHQVDEKNKRLLSAAKM 339
+ SG G+ ++ L + A L+ ++ K AK+
Sbjct: 267 AGSGNLTLALEAKTGKLHQEVNLVVMRATQLQKNLTCEVWGPTSPKLMLSLKLENKEAKV 326
Query: 340 FEKHRILNVKKDESVILPCSAQGN 363
++ + + V E+ + C +
Sbjct: 327 SKREKAVWVLNPEAGMWQCLLSDS 350
Score = 84.1 bits (207), Expect = 3e-18
Identities = 33/291 (11%), Positives = 75/291 (25%), Gaps = 39/291 (13%)
Query: 11 LSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQRED 70
+ + ++ G + L P S + + L + +++ +D
Sbjct: 98 FGLTANSDTHLLQ--GQSLTLTLESPPGSSPSVQ-CRSPR-GKNIQGGKTLSVSQLELQD 153
Query: 71 AGMYQCHVSADDDSAQMSAQVILGGELVEIASSNQVV-VDVGHRIELHCRVSPKRLSSAK 129
+G + C V + + +++ + + V L V S
Sbjct: 154 SGTWTCTVLQNQKKVEFKIDIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGSGEL 213
Query: 130 AWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVD--ESDRY 187
W + +S + D +E + + L + Q +
Sbjct: 214 WWQAER---ASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSG 270
Query: 188 RSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQ 247
K G VN + T L C
Sbjct: 271 N-LTLALEAKT-GKLHQEVNLVVMRAT----------------------QLQKNLTCEVW 306
Query: 248 GNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEG 298
G P + + ++ ++ V ++G+W C+ ++S
Sbjct: 307 GPTSPKLMLSL-----KLENKEAKVSKREKAVWVLNPEAGMWQCLLSDSGQ 352
Score = 64.8 bits (157), Expect = 8e-12
Identities = 15/155 (9%), Positives = 43/155 (27%), Gaps = 54/155 (34%)
Query: 238 ESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI---------------------GSSL 276
++V L C+A W + ++ + L
Sbjct: 10 DTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPL 69
Query: 277 SISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSA 336
I +++ DS + C + + + +L++ + +
Sbjct: 70 IIKNLKIEDSDTYICEVEDQKEEV-------------------QLLVFGLTANSD----- 105
Query: 337 AKMFEKHRILNVKKDESVILPCSAQGNPLPTIKYR 371
++ + +S+ L + P+++ R
Sbjct: 106 ---------THLLQGQSLTLTLESPPGSSPSVQCR 131
Score = 54.4 bits (130), Expect = 2e-08
Identities = 28/187 (14%), Positives = 51/187 (27%), Gaps = 33/187 (17%)
Query: 5 IQVKSSLSIEMS-PSGQVVVDVGHRIELHCRVSPKRLSSAKA---WLKDGLVLRRNSDEV 60
+ K +E S P V + EL + S + + ++R + +
Sbjct: 186 VYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDP 245
Query: 61 -------------LVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGELVEIASSNQVV 107
L Q +G + A + V+
Sbjct: 246 KLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQEVNL-------------VVM 292
Query: 108 VDVGHRIELHCRVSPKRLSSAK-AWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDG 166
+ L C V + + + + E V V +AGM+QC + D
Sbjct: 293 RATQLQKNLTCEVWGPTSPKLMLSLKLENKEAKVSKREKAV--WVLNPEAGMWQCLLSDS 350
Query: 167 KYHMLSS 173
+L S
Sbjct: 351 GQVLLES 357
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil,
immunoglobulin, immune system, extracellular; HET: NAG;
3.10A {Homo sapiens} PDB: 3o4o_B*
Length = 349
Score = 86.5 bits (213), Expect = 4e-19
Identities = 35/341 (10%), Positives = 77/341 (22%), Gaps = 93/341 (27%)
Query: 20 QVVVDVGHRIELHCRVSPKRLSSAK----------AWLKDGLVLRR-------------- 55
Q+ V + C + L W
Sbjct: 16 QIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRIS 75
Query: 56 NSDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVI----LGGELVEIASSNQVVVDVG 111
+VL D G Y C + ++++ + + +
Sbjct: 76 KEKDVLWFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEY 135
Query: 112 HRIELHCRVSPKRLSSAKA----WLKDGLVLRRN-----SDEVLVLDRVQREDAGMYQCH 162
+ C S+ W ++ L + G Y C
Sbjct: 136 GIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNFNNVIPEGMNLSFLIALISNNGNYTCV 195
Query: 163 I---EDGK-YHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKR 218
+ E+G+ +H+ + + + ++
Sbjct: 196 VTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIH--------------------------- 228
Query: 219 LLSAAKMFEKHRILNVKKDESVILPCSA----QGNPLPTIKWYKQDSPVEESDRIQRI-- 272
H + + E +++PC+ + + W ++ I
Sbjct: 229 ------SPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINE 282
Query: 273 ------------GSSLSISHVEESDSGV-WNCVANNSEGQD 300
LSI V D + C A +++G+
Sbjct: 283 SISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAKGEV 323
Score = 83.0 bits (204), Expect = 6e-18
Identities = 28/207 (13%), Positives = 65/207 (31%), Gaps = 25/207 (12%)
Query: 170 MLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKH 229
L +D +Y C N T S ++ L + + ++ H
Sbjct: 75 SKEKDVLWFRPTLLNDT-GNYTCMLRNT-TYCSKVAFP---LEVVQKDSCFNSPMKLPVH 129
Query: 230 RILNVKKDESVILP---CSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDS 286
++ + + P + PTI WY ++ + + G +LS S++
Sbjct: 130 KLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNFNNVIPEGMNLSFLIALISNN 189
Query: 287 GVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRIL 346
G + CV E +H+ + + + + + + H +
Sbjct: 190 GNYTCVVTYPENGR-----------TFHLTRTLTVKVVGSPKNAVPPVIHSP--NDHVVY 236
Query: 347 NVKKDESVILPCSA----QGNPLPTIK 369
+ E +++PC+ + +
Sbjct: 237 EKEPGEELLIPCTVYFSFLMDSRNEVW 263
Score = 68.7 bits (167), Expect = 4e-13
Identities = 29/218 (13%), Positives = 56/218 (25%), Gaps = 35/218 (16%)
Query: 5 IQVKSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKA----WLKDGLVLRRN---- 56
+Q S + M + + C S+ W ++
Sbjct: 114 VQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNFNNVI 173
Query: 57 -SDEVLVLDRVQREDAGMYQCHVSADDDSAQ----MSAQVILGGE--------LVEIASS 103
L + G Y C V+ ++ + V + G +
Sbjct: 174 PEGMNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDH 233
Query: 104 NQVVVDVGHRIELHCRVSPKRLSSAKA---WLKDGLVLRRNSDEVLVLDRVQREDAGMYQ 160
+ G + + C V L ++ W DG + +V + + +
Sbjct: 234 VVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTE--- 290
Query: 161 CHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKL 198
+ L I +V D RSY C +
Sbjct: 291 --------DETRTQILSIKKVTSEDLKRSYVCHARSAK 320
Score = 68.7 bits (167), Expect = 4e-13
Identities = 24/159 (15%), Positives = 45/159 (28%), Gaps = 42/159 (26%)
Query: 234 VKKDESVILPC-----------SAQGNPLPTIKWYKQDSPVE---------ESDRIQRIG 273
V +DE + C S + T+ WY + +RI +
Sbjct: 19 VFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEK 78
Query: 274 SSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRL 333
L +D+G + C+ N+ K+ L + Q D
Sbjct: 79 DVLWFRPTLLNDTGNYTCMLRNTTYCSKVAF---------------PLEVVQKDS----C 119
Query: 334 LSAAKMFEKHRILNVKKDESVILP---CSAQGNPLPTIK 369
++ H++ + + P + PTI
Sbjct: 120 FNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTIT 158
Score = 40.6 bits (94), Expect = 6e-04
Identities = 20/103 (19%), Positives = 34/103 (33%), Gaps = 25/103 (24%)
Query: 16 SPSGQVVVDV--GHRIELHCRVSPKRLSSAKA---WLKDGLVLRRNSDE----------- 59
SP+ VV + G + + C V L ++ W DG + +
Sbjct: 229 SPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSR 288
Query: 60 --------VLVLDRVQRED-AGMYQCHVSADDDSAQMSAQVIL 93
+L + +V ED Y CH + +A+V
Sbjct: 289 TEDETRTQILSIKKVTSEDLKRSYVCHARSAKGEVAKAAKVKQ 331
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle
isozymes; IG fold, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: b.1.1.4
Length = 114
Score = 80.8 bits (200), Expect = 4e-19
Identities = 20/91 (21%), Positives = 36/91 (39%), Gaps = 4/91 (4%)
Query: 221 SAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI----GSSL 276
S ++ + V+ ESV L G T W K ++ES+ ++ GS L
Sbjct: 6 SGPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKL 65
Query: 277 SISHVEESDSGVWNCVANNSEGQDKMQLFIQ 307
+I + G + + N G + Q+ +
Sbjct: 66 TILAARQEHCGCYTLLVENKLGSRQAQVNLT 96
Score = 49.2 bits (118), Expect = 9e-08
Identities = 16/84 (19%), Positives = 28/84 (33%), Gaps = 16/84 (19%)
Query: 21 VVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLR-------RNSDEV--LVLDRVQR 68
V G +EL +V+ + W+K ++ NS+ L + ++
Sbjct: 17 QKVRAGESVELFGKVTGTQPITCT----WMKFRKQIQESEHMKVENSENGSKLTILAARQ 72
Query: 69 EDAGMYQCHVSADDDSAQMSAQVI 92
E G Y V S Q +
Sbjct: 73 EHCGCYTLLVENKLGSRQAQVNLT 96
Score = 45.0 bits (107), Expect = 2e-06
Identities = 14/71 (19%), Positives = 26/71 (36%), Gaps = 16/71 (22%)
Query: 106 VVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLR-------RNSDEV--LVLDRVQR 153
V G +EL +V+ + W+K ++ NS+ L + ++
Sbjct: 17 QKVRAGESVELFGKVTGTQPITCT----WMKFRKQIQESEHMKVENSENGSKLTILAARQ 72
Query: 154 EDAGMYQCHIE 164
E G Y +E
Sbjct: 73 EHCGCYTLLVE 83
Score = 31.9 bits (73), Expect = 0.084
Identities = 8/35 (22%), Positives = 12/35 (34%)
Query: 335 SAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIK 369
S ++ + V+ ESV L G T
Sbjct: 6 SGPQIIQFPEDQKVRAGESVELFGKVTGTQPITCT 40
>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 80.1 bits (198), Expect = 5e-19
Identities = 16/69 (23%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 232 LNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNC 291
V + + L C + + +I W + + ES+R + G + + +DSG++ C
Sbjct: 13 FLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTRITGEEVEVQDSVPADSGLYAC 71
Query: 292 VANNSEGQD 300
V ++ G D
Sbjct: 72 VTSSPSGSD 80
Score = 60.9 bits (148), Expect = 5e-12
Identities = 22/91 (24%), Positives = 38/91 (41%), Gaps = 12/91 (13%)
Query: 9 SSLSIEMSPSGQVVVDVGHRIELHCRVS--PKRLSSAKAWLKDGLVLR-----RNSDEVL 61
SS S + +V G ++L CR+ + ++ WL+DG+ L R + E +
Sbjct: 2 SSGSSGVEVE-SFLVHPGDLLQLRCRLRDDVQSIN----WLRDGVQLAESNRTRITGEEV 56
Query: 62 VLDRVQREDAGMYQCHVSADDDSAQMSAQVI 92
+ D+G+Y C S+ S V
Sbjct: 57 EVQDSVPADSGLYACVTSSPSGSDTTYFSVN 87
Score = 52.8 bits (127), Expect = 4e-09
Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 11/63 (17%)
Query: 106 VVVDVGHRIELHCRVS--PKRLSSAKAWLKDGLVLR-----RNSDEVLVLDRVQREDAGM 158
+V G ++L CR+ + ++ WL+DG+ L R + E + + D+G+
Sbjct: 13 FLVHPGDLLQLRCRLRDDVQSIN----WLRDGVQLAESNRTRITGEEVEVQDSVPADSGL 68
Query: 159 YQC 161
Y C
Sbjct: 69 YAC 71
Score = 27.4 bits (61), Expect = 3.2
Identities = 4/23 (17%), Positives = 9/23 (39%), Gaps = 1/23 (4%)
Query: 346 LNVKKDESVILPCSAQGNPLPTI 368
V + + L C + + +I
Sbjct: 13 FLVHPGDLLQLRCRLRDDV-QSI 34
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin,
beta-sandwich, mceacam1A - immunoglobulin FO spike NTD -
galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus
musculus} PDB: 1l6z_A*
Length = 208
Score = 83.6 bits (206), Expect = 6e-19
Identities = 35/206 (16%), Positives = 69/206 (33%), Gaps = 21/206 (10%)
Query: 108 VDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGK 167
V + + L P L + AW K V + Y G+
Sbjct: 11 VAEDNNVLLLVHNLPLALGAF-AWYKGNTTAIDKEIARFVPNSNMNFTGQAYS-----GR 64
Query: 168 YHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFE 227
+ S+G L+ + D Y ++ + +V + F
Sbjct: 65 EIIYSNGSLLFQMITMKDM-GVYTLDMTDENYRRTQATV--------RFHVHQPVTQPFL 115
Query: 228 KHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI--GSSLSISHVEESD 285
+ VK+ +SV L C + + I+W ++ ++R+ S L I ++ D
Sbjct: 116 QVTNTTVKELDSVTLTCLS-NDIGANIQWLFNSQSLQLTERMTLSQNNSILRIDPIKRED 174
Query: 286 SGVWNCVANNSEGQ---DKMQLFIQY 308
+G + C +N + ++L I +
Sbjct: 175 AGEYQCEISNPVSVRRSNSIKLDIIF 200
Score = 68.2 bits (166), Expect = 1e-13
Identities = 35/189 (18%), Positives = 60/189 (31%), Gaps = 42/189 (22%)
Query: 11 LSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN-------------- 56
++IE P V + + L P L + AW K
Sbjct: 2 VTIEAVPP---QVAEDNNVLLLVHNLPLALGAF-AWYKGNTTAIDKEIARFVPNSNMNFT 57
Query: 57 -----------SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGELVEIA---S 102
S+ L+ + +D G+Y ++ D++ + A V
Sbjct: 58 GQAYSGREIIYSNGSLLFQMITMKDMGVYTLDMT-DENYRRTQATVRFHVHQPVTQPFLQ 116
Query: 103 SNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNS-------DEVLVLDRVQRED 155
V + L C + + WL + L+ + +L +D ++RED
Sbjct: 117 VTNTTVKELDSVTLTCLSNDIGAN--IQWLFNSQSLQLTERMTLSQNNSILRIDPIKRED 174
Query: 156 AGMYQCHIE 164
AG YQC I
Sbjct: 175 AGEYQCEIS 183
Score = 53.1 bits (127), Expect = 2e-08
Identities = 24/158 (15%), Positives = 42/158 (26%), Gaps = 44/158 (27%)
Query: 233 NVKKDESVILPCSAQGNPLPTIKWYKQDSPVEE-------------------SDR-IQRI 272
V +D +V+L L WYK ++ + S R I
Sbjct: 10 QVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYS 69
Query: 273 GSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKR 332
SL + D GV+ + + + + N
Sbjct: 70 NGSLLFQMITMKDMGVYTLDMTDENY--------RRTQATVRFHVHQPVTQPFLQVTNT- 120
Query: 333 LLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKY 370
VK+ +SV L C + + I++
Sbjct: 121 --------------TVKELDSVTLTCLS-NDIGANIQW 143
Score = 46.2 bits (109), Expect = 4e-06
Identities = 21/96 (21%), Positives = 37/96 (38%), Gaps = 10/96 (10%)
Query: 5 IQVKSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNS------- 57
V ++ V + L C + + WL + L+
Sbjct: 104 FHVHQPVTQPFLQVTNTTVKELDSVTLTCLSNDIGAN--IQWLFNSQSLQLTERMTLSQN 161
Query: 58 DEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVIL 93
+ +L +D ++REDAG YQC +S + S + S + L
Sbjct: 162 NSILRIDPIKREDAGEYQCEIS-NPVSVRRSNSIKL 196
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET,
muscle protein; NMR {Caenorhabditis elegans} SCOP:
b.1.1.4 PDB: 1wiu_A
Length = 93
Score = 79.7 bits (197), Expect = 6e-19
Identities = 18/90 (20%), Positives = 32/90 (35%), Gaps = 4/90 (4%)
Query: 222 AAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI----GSSLS 277
K+ R + +K + L G P PT W DS + + +S+
Sbjct: 2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIF 61
Query: 278 ISHVEESDSGVWNCVANNSEGQDKMQLFIQ 307
+ +DSG + N G+D+ +
Sbjct: 62 FPSAKRADSGNYKLKVKNELGEDEAIFEVI 91
Score = 44.6 bits (106), Expect = 2e-06
Identities = 12/90 (13%), Positives = 26/90 (28%), Gaps = 16/90 (17%)
Query: 15 MSPSGQVVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRNSDE---------VLV 62
++ S ++ + G L P + W + +
Sbjct: 6 LTASRKIKIKAGFTHNLEVDFIGAPDPTAT----WTVGDSGAALAPELLVDAKSSTTSIF 61
Query: 63 LDRVQREDAGMYQCHVSADDDSAQMSAQVI 92
+R D+G Y+ V + + +VI
Sbjct: 62 FPSAKRADSGNYKLKVKNELGEDEAIFEVI 91
Score = 40.0 bits (94), Expect = 8e-05
Identities = 8/71 (11%), Positives = 18/71 (25%), Gaps = 16/71 (22%)
Query: 106 VVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRNSDE---------VLVLDRVQR 153
+ + G L P + W + + +R
Sbjct: 12 IKIKAGFTHNLEVDFIGAPDPTAT----WTVGDSGAALAPELLVDAKSSTTSIFFPSAKR 67
Query: 154 EDAGMYQCHIE 164
D+G Y+ ++
Sbjct: 68 ADSGNYKLKVK 78
Score = 31.5 bits (72), Expect = 0.096
Identities = 8/34 (23%), Positives = 12/34 (35%)
Query: 336 AAKMFEKHRILNVKKDESVILPCSAQGNPLPTIK 369
K+ R + +K + L G P PT
Sbjct: 2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTAT 35
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain,
immunoglobulin fold, alternative splicing, signal,
muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB:
1ncu_A 1tnm_A 1tnn_A
Length = 106
Score = 80.1 bits (198), Expect = 6e-19
Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 6/80 (7%)
Query: 234 VKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI----GSSLSISHVEESDSGVW 289
V + ES C G P+PT+ W ++ + S R Q S+ IS V+ SD G +
Sbjct: 26 VYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNY 85
Query: 290 NCVANNSEGQD--KMQLFIQ 307
+ V NSEG+ + L IQ
Sbjct: 86 SVVVENSEGKQEAEFTLTIQ 105
Score = 46.6 bits (111), Expect = 7e-07
Identities = 15/84 (17%), Positives = 25/84 (29%), Gaps = 16/84 (19%)
Query: 21 VVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRNSDE---------VLVLDRVQR 68
+ V G C P ++ WL+ G VL ++ + VQ
Sbjct: 24 MTVYEGESARFSCDTDGEPVPTVT----WLRKGQVLSTSARHQVTTTKYKSTFEISSVQA 79
Query: 69 EDAGMYQCHVSADDDSAQMSAQVI 92
D G Y V + + +
Sbjct: 80 SDEGNYSVVVENSEGKQEAEFTLT 103
Score = 43.9 bits (104), Expect = 6e-06
Identities = 17/87 (19%), Positives = 29/87 (33%), Gaps = 16/87 (18%)
Query: 106 VVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRNSDE---------VLVLDRVQR 153
+ V G C P ++ WL+ G VL ++ + VQ
Sbjct: 24 MTVYEGESARFSCDTDGEPVPTVT----WLRKGQVLSTSARHQVTTTKYKSTFEISSVQA 79
Query: 154 EDAGMYQCHIEDGKYHMLSSGELIIHQ 180
D G Y +E+ + + L I +
Sbjct: 80 SDEGNYSVVVENSEGKQEAEFTLTIQK 106
Score = 35.4 bits (82), Expect = 0.005
Identities = 13/47 (27%), Positives = 22/47 (46%)
Query: 323 IHQVDEKNKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIK 369
+H + + AA++ K R + V + ES C G P+PT+
Sbjct: 1 MHHHHHHSSKTTLAARILTKPRSMTVYEGESARFSCDTDGEPVPTVT 47
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 100
Score = 80.1 bits (198), Expect = 6e-19
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 232 LNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI--GSSLSISHVEESDSGVW 289
+ D + +L C A G+PLP I W K+ D I +L I ++ SD+G +
Sbjct: 18 QTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQGTLQIKNLRISDTGTY 77
Query: 290 NCVANNSEGQD 300
CVA +S G+
Sbjct: 78 TCVATSSSGET 88
Score = 52.4 bits (126), Expect = 4e-09
Identities = 17/91 (18%), Positives = 30/91 (32%), Gaps = 15/91 (16%)
Query: 12 SIEMSPSGQVVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRNSDEVLVLD---- 64
I P+ + V L C+ + P +S WLK+G + +
Sbjct: 10 IILQGPA-NQTLAVDGTALLKCKATGDPLPVIS----WLKEGFTFPGRDPRATIQEQGTL 64
Query: 65 ---RVQREDAGMYQCHVSADDDSAQMSAQVI 92
++ D G Y C ++ SA +
Sbjct: 65 QIKNLRISDTGTYTCVATSSSGETSWSAVLD 95
Score = 48.2 bits (115), Expect = 1e-07
Identities = 13/66 (19%), Positives = 22/66 (33%), Gaps = 14/66 (21%)
Query: 106 VVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRNSDEVLVLD-------RVQRED 155
+ V L C+ + P +S WLK+G + + ++ D
Sbjct: 18 QTLAVDGTALLKCKATGDPLPVIS----WLKEGFTFPGRDPRATIQEQGTLQIKNLRISD 73
Query: 156 AGMYQC 161
G Y C
Sbjct: 74 TGTYTC 79
Score = 35.8 bits (83), Expect = 0.003
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 346 LNVKKDESVILPCSAQGNPLPTIK 369
+ D + +L C A G+PLP I
Sbjct: 18 QTLAVDGTALLKCKATGDPLPVIS 41
>1f97_A Junction adhesion molecule; immunoglobulin superfamily,
beta-sandwich fold, cell adhesion; 2.50A {Mus musculus}
SCOP: b.1.1.1 b.1.1.4
Length = 212
Score = 83.1 bits (205), Expect = 9e-19
Identities = 26/159 (16%), Positives = 50/159 (31%), Gaps = 36/159 (22%)
Query: 224 KMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQD------------SPVEESDRIQR 271
++ + V ++ES+ L C+ G P ++W +DR+
Sbjct: 3 SVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTF 62
Query: 272 IGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNK 331
S ++ S V D+G + C+ + GQ+ ++ I L +
Sbjct: 63 SSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIH-------------LTVL------- 102
Query: 332 RLLSAAKMFEKHRILNVKKDESVILPCSAQ-GNPLPTIK 369
+V +L CS G+P
Sbjct: 103 ---VPPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYS 138
Score = 81.2 bits (200), Expect = 4e-18
Identities = 39/219 (17%), Positives = 53/219 (24%), Gaps = 43/219 (19%)
Query: 98 VEIASSNQVVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRNSDEVLVLDRVQRE 154
V A S+ V I+L C S R+ W
Sbjct: 4 VYTAQSDVQVP-ENESIKLTCTYSGFSSPRVE----WKFVQ-------------GSTTAL 45
Query: 155 DAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLT 214
Q SS + V D Y C + + LT
Sbjct: 46 VCYNSQITAPYADRVTFSSSGITFSSVTRKDN-GEYTCMVSEEGGQN----YGEVSIHLT 100
Query: 215 ENKRLLSAAKMFEKHRILNVKKDESVILPCSAQ-GNPLPTIKWYKQDSPVEESDR----- 268
+L +V +L CS G+P W+K + +D
Sbjct: 101 ----VLVPPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRA 156
Query: 269 -------IQRIGSSLSISHVEESDSGVWNCVANNSEGQD 300
I L V DSG + C A N G
Sbjct: 157 FMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTA 195
Score = 78.9 bits (194), Expect = 2e-17
Identities = 39/192 (20%), Positives = 56/192 (29%), Gaps = 50/192 (26%)
Query: 12 SIEMSPSGQVVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRN------------ 56
S+ + S V V I+L C S R+ W
Sbjct: 3 SVYTAQS-DVQVPENESIKLTCTYSGFSSPRVE----WKFVQGSTTALVCYNSQITAPYA 57
Query: 57 -----SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGELVEIA-----SSNQV 106
S + V R+D G Y C VS + + L V + S
Sbjct: 58 DRVTFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHL---TVLVPPSKPTISVPS 114
Query: 107 VVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDE-----------------VLVLD 149
V +G+R L C S +W KDG+ + + L+ D
Sbjct: 115 SVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFD 174
Query: 150 RVQREDAGMYQC 161
V D+G Y C
Sbjct: 175 PVTAFDSGEYYC 186
Score = 47.7 bits (113), Expect = 2e-06
Identities = 21/108 (19%), Positives = 33/108 (30%), Gaps = 18/108 (16%)
Query: 1 MQLFIQVKSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDE- 59
+ + + V S V +G+R L C S +W KDG+ + +
Sbjct: 95 VSIHLTVLVPPSKPTISV-PSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKK 153
Query: 60 ----------------VLVLDRVQREDAGMYQCHVSADDDSAQMSAQV 91
L+ D V D+G Y C +A S
Sbjct: 154 TRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAA 201
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase,
heparin-binding, nucleotide-binding, immunoglobulin
domain, alternatice splicing; NMR {Mus musculus}
Length = 95
Score = 79.5 bits (196), Expect = 1e-18
Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 232 LNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNC 291
L V + + L C + + +I W + + ES+R + G + + +DSG++ C
Sbjct: 19 LLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLVESNRTRITGEEVEVRDSIPADSGLYAC 77
Query: 292 VANNSEGQD 300
V ++ G D
Sbjct: 78 VTSSPSGSD 86
Score = 60.2 bits (146), Expect = 8e-12
Identities = 18/93 (19%), Positives = 38/93 (40%), Gaps = 12/93 (12%)
Query: 6 QVKSSLSIEMSPSGQVVVDVGHRIELHCRVS--PKRLSSAKAWLKDGLVLRRN-----SD 58
+ + + ++V G ++L CR+ + ++ WL+DG+ L + +
Sbjct: 5 EQAQPWGVPVEVE-SLLVHPGDLLQLRCRLRDDVQSIN----WLRDGVQLVESNRTRITG 59
Query: 59 EVLVLDRVQREDAGMYQCHVSADDDSAQMSAQV 91
E + + D+G+Y C S+ S V
Sbjct: 60 EEVEVRDSIPADSGLYACVTSSPSGSDTTYFSV 92
Score = 52.9 bits (127), Expect = 3e-09
Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 11/63 (17%)
Query: 106 VVVDVGHRIELHCRVS--PKRLSSAKAWLKDGLVLRRN-----SDEVLVLDRVQREDAGM 158
++V G ++L CR+ + ++ WL+DG+ L + + E + + D+G+
Sbjct: 19 LLVHPGDLLQLRCRLRDDVQSIN----WLRDGVQLVESNRTRITGEEVEVRDSIPADSGL 74
Query: 159 YQC 161
Y C
Sbjct: 75 YAC 77
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex,
alternative splicing, ATP-binding, calcium,
calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens}
PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Length = 107
Score = 79.7 bits (197), Expect = 1e-18
Identities = 18/82 (21%), Positives = 32/82 (39%), Gaps = 6/82 (7%)
Query: 232 LNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI----GSSLSISHVEESDSG 287
+ V L C G P P + W K + S+R+ L ++ +D+G
Sbjct: 23 VRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAG 82
Query: 288 VWNCVANNSEGQD--KMQLFIQ 307
V+ C A N+ G+ + +
Sbjct: 83 VYVCRARNAAGEAYAAAAVTVL 104
Score = 47.0 bits (112), Expect = 4e-07
Identities = 22/84 (26%), Positives = 27/84 (32%), Gaps = 16/84 (19%)
Query: 21 VVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRNSDE---------VLVLDRVQR 68
V V G EL C V P + W K G L + L+L
Sbjct: 23 VRVVSGAEAELKCVVLGEPPPVVV----WEKGGQQLAASERLSFPADGAEHGLLLTAALP 78
Query: 69 EDAGMYQCHVSADDDSAQMSAQVI 92
DAG+Y C A +A V
Sbjct: 79 TDAGVYVCRARNAAGEAYAAAAVT 102
Score = 44.3 bits (105), Expect = 4e-06
Identities = 19/68 (27%), Positives = 23/68 (33%), Gaps = 16/68 (23%)
Query: 106 VVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRNSDE---------VLVLDRVQR 153
V V G EL C V P + W K G L + L+L
Sbjct: 23 VRVVSGAEAELKCVVLGEPPPVVV----WEKGGQQLAASERLSFPADGAEHGLLLTAALP 78
Query: 154 EDAGMYQC 161
DAG+Y C
Sbjct: 79 TDAGVYVC 86
Score = 32.4 bits (74), Expect = 0.054
Identities = 6/24 (25%), Positives = 8/24 (33%)
Query: 346 LNVKKDESVILPCSAQGNPLPTIK 369
+ V L C G P P +
Sbjct: 23 VRVVSGAEAELKCVVLGEPPPVVV 46
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein,
cell membrane, cytoplasm, cytoskeleton, disease
mutation, immunoglobulin domain; NMR {Homo sapiens}
Length = 100
Score = 79.3 bits (196), Expect = 1e-18
Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 5/73 (6%)
Query: 232 LNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI-----GSSLSISHVEESDS 286
+++ + + G P P + WY V+ D + I SL V SD+
Sbjct: 15 MSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRASDA 74
Query: 287 GVWNCVANNSEGQ 299
G + CVA N G+
Sbjct: 75 GAYACVAKNRAGE 87
Score = 42.3 bits (100), Expect = 2e-05
Identities = 17/85 (20%), Positives = 31/85 (36%), Gaps = 17/85 (20%)
Query: 21 VVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRNSDE----------VLVLDRVQ 67
+ +D G + +VS P +S W +G ++ + L+ + V+
Sbjct: 15 MSIDEGRFCRMDFKVSGLPAPDVS----WYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVR 70
Query: 68 REDAGMYQCHVSADDDSAQMSAQVI 92
DAG Y C A + Q+
Sbjct: 71 ASDAGAYACVAKNRAGEATFTVQLD 95
Score = 41.9 bits (99), Expect = 2e-05
Identities = 15/69 (21%), Positives = 27/69 (39%), Gaps = 17/69 (24%)
Query: 106 VVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRNSDE----------VLVLDRVQ 152
+ +D G + +VS P +S W +G ++ + L+ + V+
Sbjct: 15 MSIDEGRFCRMDFKVSGLPAPDVS----WYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVR 70
Query: 153 REDAGMYQC 161
DAG Y C
Sbjct: 71 ASDAGAYAC 79
Score = 30.4 bits (69), Expect = 0.22
Identities = 3/24 (12%), Positives = 9/24 (37%)
Query: 346 LNVKKDESVILPCSAQGNPLPTIK 369
+++ + + G P P +
Sbjct: 15 MSIDEGRFCRMDFKVSGLPAPDVS 38
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin,
actin-associated scaffold, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 110
Score = 79.7 bits (197), Expect = 1e-18
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 5/73 (6%)
Query: 232 LNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI-----GSSLSISHVEESDS 286
L V++ + + C G P P + W PV + + SL I V D+
Sbjct: 19 LTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRDA 78
Query: 287 GVWNCVANNSEGQ 299
G++ C+A N GQ
Sbjct: 79 GIYTCIATNRAGQ 91
Score = 45.4 bits (108), Expect = 2e-06
Identities = 21/85 (24%), Positives = 34/85 (40%), Gaps = 17/85 (20%)
Query: 21 VVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRNSDE----------VLVLDRVQ 67
+ V G + C+VS P LS W DG +R +S L+++ V
Sbjct: 19 LTVQEGKLCRMDCKVSGLPTPDLS----WQLDGKPVRPDSAHKMLVRENGVHSLIIEPVT 74
Query: 68 REDAGMYQCHVSADDDSAQMSAQVI 92
DAG+Y C + S +++
Sbjct: 75 SRDAGIYTCIATNRAGQNSFSLELV 99
Score = 44.3 bits (105), Expect = 4e-06
Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 17/69 (24%)
Query: 106 VVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRNSDE----------VLVLDRVQ 152
+ V G + C+VS P LS W DG +R +S L+++ V
Sbjct: 19 LTVQEGKLCRMDCKVSGLPTPDLS----WQLDGKPVRPDSAHKMLVRENGVHSLIIEPVT 74
Query: 153 REDAGMYQC 161
DAG+Y C
Sbjct: 75 SRDAGIYTC 83
Score = 30.0 bits (68), Expect = 0.42
Identities = 6/24 (25%), Positives = 11/24 (45%)
Query: 346 LNVKKDESVILPCSAQGNPLPTIK 369
L V++ + + C G P P +
Sbjct: 19 LTVQEGKLCRMDCKVSGLPTPDLS 42
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 99
Score = 78.9 bits (195), Expect = 2e-18
Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
Query: 234 VKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIG-SSLSISHVEESDSGVWNCV 292
V + + +L CS +G P+P I W P++ + G + L I D G + C+
Sbjct: 23 VIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTCEAGVAELHIQDALPEDHGTYTCL 82
Query: 293 ANNSEGQD--KMQLFIQ 307
A N+ GQ + +
Sbjct: 83 AENALGQVSCSAWVTVH 99
Score = 49.2 bits (118), Expect = 6e-08
Identities = 23/97 (23%), Positives = 32/97 (32%), Gaps = 18/97 (18%)
Query: 10 SLSIEMSPS-----GQVVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRNSDEV- 60
S +E++PS V G L C V P R++ WL +G ++
Sbjct: 5 SSGMEVAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRIT----WLLNGQPIQYARSTCE 60
Query: 61 -----LVLDRVQREDAGMYQCHVSADDDSAQMSAQVI 92
L + ED G Y C SA V
Sbjct: 61 AGVAELHIQDALPEDHGTYTCLAENALGQVSCSAWVT 97
Score = 45.0 bits (107), Expect = 2e-06
Identities = 19/83 (22%), Positives = 29/83 (34%), Gaps = 13/83 (15%)
Query: 106 VVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRNSDEV------LVLDRVQREDA 156
V G L C V P R++ WL +G ++ L + ED
Sbjct: 21 CAVIEGQDFVLQCSVRGTPVPRIT----WLLNGQPIQYARSTCEAGVAELHIQDALPEDH 76
Query: 157 GMYQCHIEDGKYHMLSSGELIIH 179
G Y C E+ + S + +H
Sbjct: 77 GTYTCLAENALGQVSCSAWVTVH 99
Score = 31.1 bits (71), Expect = 0.12
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 348 VKKDESVILPCSAQGNPLPTIK 369
V + + +L CS +G P+P I
Sbjct: 23 VIEGQDFVLQCSVRGTPVPRIT 44
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell
adhesion, immunoglobulin domain; 3.2A {Drosophila
melanogaster} PDB: 2vra_A*
Length = 217
Score = 81.4 bits (201), Expect = 3e-18
Identities = 43/212 (20%), Positives = 74/212 (34%), Gaps = 51/212 (24%)
Query: 106 VVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCH 162
+VV L+C+V P+ + W KDG + N
Sbjct: 19 LVVKKNEPATLNCKVEGKPEPTIE----WFKDGEPVSTNEK------------------- 55
Query: 163 IEDGKYHMLSSGELIIHQVDESDRYR---SYQCRGVNKLTGASLLSVNRGRLSLTENKRL 219
G L ++ + + + Y C N++ G ++ S + ++
Sbjct: 56 --KSHRVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRV-GQAV--------SRHASLQI 104
Query: 220 LSAAKMFEKH-RILNVKKDESVILPCS-AQGNPLPTIKWYKQDSPVEESDRIQRIGS--- 274
F + V K E+ +L C +G P PT+ W K P+++ + S
Sbjct: 105 AVLRDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRV 164
Query: 275 ------SLSISHVEESDSGVWNCVANNSEGQD 300
+L IS+VE D G + C+A N G
Sbjct: 165 RIVDGGNLLISNVEPIDEGNYKCIAQNLVGTR 196
Score = 79.9 bits (197), Expect = 1e-17
Identities = 36/148 (24%), Positives = 55/148 (37%), Gaps = 34/148 (22%)
Query: 232 LNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQR--------IGSSLSISHVEE 283
L VKK+E L C +G P PTI+W+K PV +++ + ++ +E
Sbjct: 19 LVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKE 78
Query: 284 SDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKH 343
D G + CVA N GQ H ++ F
Sbjct: 79 QDGGEYWCVAKNRVGQ------AVSRHASL------------------QIAVLRDDFRVE 114
Query: 344 -RILNVKKDESVILPCS-AQGNPLPTIK 369
+ V K E+ +L C +G P PT+
Sbjct: 115 PKDTRVAKGETALLECGPPKGIPEPTLI 142
Score = 67.2 bits (164), Expect = 4e-13
Identities = 37/201 (18%), Positives = 62/201 (30%), Gaps = 49/201 (24%)
Query: 21 VVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRNSDEV-------------LVLD 64
+VV L+C+V P+ + W KDG + N + +
Sbjct: 19 LVVKKNEPATLNCKVEGKPEPTIE----WFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQ 74
Query: 65 RVQREDAGMYQCHVS---ADDDSAQMSAQVILGGELVEIASSNQVVVDVGHRIELHCRV- 120
+ +D G Y C S S Q+ + + + + V G L C
Sbjct: 75 GKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVA-KGETALLECGPP 133
Query: 121 --SPK-RLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELI 177
P+ L W+KDG+ L + ++ G L+
Sbjct: 134 KGIPEPTLI----WIKDGVPLDDLKAMSFG----------------ASSRVRIVDGGNLL 173
Query: 178 IHQVDESDRYRSYQCRGVNKL 198
I V+ D Y+C N +
Sbjct: 174 ISNVEPIDEGN-YKCIAQNLV 193
Score = 44.1 bits (104), Expect = 2e-05
Identities = 18/86 (20%), Positives = 26/86 (30%), Gaps = 23/86 (26%)
Query: 12 SIEMSPSGQVVVDVGHRIELHCRV---SPK-RLSSAKAWLKDGLVLRRN----------- 56
+ P V G L C P+ L W+KDG+ L
Sbjct: 110 DFRVEPKDTRVA-KGETALLECGPPKGIPEPTLI----WIKDGVPLDDLKAMSFGASSRV 164
Query: 57 ---SDEVLVLDRVQREDAGMYQCHVS 79
L++ V+ D G Y+C
Sbjct: 165 RIVDGGNLLISNVEPIDEGNYKCIAQ 190
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell
adhesion molecule, immunoglobuline superfamily,
alternative splicing, cell adhesion; 2.19A {Mus
musculus} PDB: 3mj7_B* 2npl_X
Length = 214
Score = 80.9 bits (199), Expect = 5e-18
Identities = 30/211 (14%), Positives = 61/211 (28%), Gaps = 20/211 (9%)
Query: 100 IASSNQVVVDVGHRIELHCRVSPKRLSSAK---AWLKDGLVLRRNSDEVLVLD--RVQRE 154
++ G L C+ + WL + +++ ++
Sbjct: 4 TTPEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDN 63
Query: 155 DAGMYQCHIEDGKYHMLSS-GELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSL 213
+ + + S + + + SD +YQC+ V K G V + L
Sbjct: 64 YYPDLKGRVHFTSNDVKSGDASINVTNLQLSDI-GTYQCK-VKKAPG-----VANKKFLL 116
Query: 214 TENKRLLSAAKMFEKHRILNVKKDESVILPCSA-QGNPLPTIKWYKQDSPVEESDRIQRI 272
T +L + + L C +G+ +W K
Sbjct: 117 T----VLVKPSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAE 172
Query: 273 --GSSLSISHVEESDSGVWNCVANNSEGQDK 301
+S+ + SG ++C N G D+
Sbjct: 173 MTSPVISVKNASSEYSGTYSCTVQNRVGSDQ 203
Score = 77.0 bits (189), Expect = 1e-16
Identities = 29/197 (14%), Positives = 55/197 (27%), Gaps = 44/197 (22%)
Query: 11 LSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAK---AWLKDGL--------VLRRNSDE 59
LSI +P ++ G L C+ + WL ++ + D+
Sbjct: 1 LSIT-TPEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDK 59
Query: 60 V-------------------------LVLDRVQREDAGMYQCHVSADDDSAQMSAQVILG 94
+ + + +Q D G YQC V A + +
Sbjct: 60 IYDNYYPDLKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVL 119
Query: 95 GELVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNS-------DEVLV 147
+ ++G+ +L C L W K + V+
Sbjct: 120 VKPSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSPVIS 179
Query: 148 LDRVQREDAGMYQCHIE 164
+ E +G Y C ++
Sbjct: 180 VKNASSEYSGTYSCTVQ 196
Score = 48.9 bits (116), Expect = 6e-07
Identities = 16/94 (17%), Positives = 27/94 (28%), Gaps = 8/94 (8%)
Query: 5 IQVKSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNS------- 57
+ V S ++G+ +L C L W K +
Sbjct: 116 LTVLVKPSGTRCFV-DGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMT 174
Query: 58 DEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQV 91
V+ + E +G Y C V S Q ++
Sbjct: 175 SPVISVKNASSEYSGTYSCTVQNRVGSDQCMLRL 208
Score = 29.3 bits (65), Expect = 1.6
Identities = 6/26 (23%), Positives = 9/26 (34%)
Query: 346 LNVKKDESVILPCSAQGNPLPTIKYR 371
+ K E+ LPC +P
Sbjct: 10 IEKAKGETAYLPCKFTLSPEDQGPLD 35
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin
superfamily, integrin-binding, cell adhesion protein;
1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A
1vsc_A
Length = 202
Score = 80.6 bits (198), Expect = 5e-18
Identities = 33/209 (15%), Positives = 59/209 (28%), Gaps = 33/209 (15%)
Query: 11 LSIEMSPSGQVVVDVGHRIELHCRVS--PKRLSSAKAWLKD------GLVLRRNSDEVLV 62
IE +P + + +G + L C + S W G V + L
Sbjct: 1 FKIETTPESRYLAQIGDSVSLTCSTTGCESPFFS---WRTQIDSPLNGKVTNEGTTSTLT 57
Query: 63 LDRVQREDAGMYQCHVSADDDSAQMSAQVILGGELVEIASSNQVVVDVGHRIELHCRVS- 121
++ V + Y C + + + QV + + ++ G I + C V+
Sbjct: 58 MNPVSFGNEHSYLCTATCESRKLEKGIQVEIYSFPKDPEIHLSGPLEAGKPITVKCSVAD 117
Query: 122 --PKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIH 179
P LK +++ D K S E+
Sbjct: 118 VYPFDRLEID-LLKGDHLMKSQEFL-----------------EDADRKSLETKSLEVTFT 159
Query: 180 QVDESDRYRSYQCRGVNKLTGASLLSVNR 208
V E D + CR + + R
Sbjct: 160 PVIE-DIGKVLVCRAKLHIDEMDSVPTVR 187
Score = 69.4 bits (169), Expect = 4e-14
Identities = 25/142 (17%), Positives = 44/142 (30%), Gaps = 31/142 (21%)
Query: 234 VKKDESVILPCSAQGNPLPTIKWYKQ-DSPVEESDRIQRIGSSLSISHVEESDSGVWNCV 292
+ +SV L CS G P W Q DSP+ + S+L+++ V + + C
Sbjct: 13 AQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFGNEHSYLCT 72
Query: 293 ANNSEGQD--KMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKK 350
A + +Q+ I + SG L
Sbjct: 73 ATCESRKLEKGIQVEIYSFPKDPEIHLSGPLEA--------------------------- 105
Query: 351 DESVILPCSAQG-NPLPTIKYR 371
+ + + CS P ++
Sbjct: 106 GKPITVKCSVADVYPFDRLEID 127
Score = 62.1 bits (150), Expect = 1e-11
Identities = 27/240 (11%), Positives = 59/240 (24%), Gaps = 72/240 (30%)
Query: 98 VEIASSNQVVVDVGHRIELHCRVS--PKRLSSAKAWLKD------GLVLRRNSDEVLVLD 149
+E ++ + +G + L C + S W G V + L ++
Sbjct: 3 IETTPESRYLAQIGDSVSLTCSTTGCESPFFS---WRTQIDSPLNGKVTNEGTTSTLTMN 59
Query: 150 RVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRG 209
V + Y C + ++ I+ +
Sbjct: 60 PVSFGNEHSYLCTATCESRKLEKGIQVEIYSFPKDP------------------------ 95
Query: 210 RLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGN---PLPTIKWYKQDSPVEES 266
E H ++ + + + CS I K D ++
Sbjct: 96 -----------------EIHLSGPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQ 138
Query: 267 DRIQRI--------GSSLSISHVEESDSGVWNCVANNSEG---------QDKMQLFIQYA 309
+ ++ ++ + V E V C A Q +L + +
Sbjct: 139 EFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMDSVPTVRQAVKELQVYIS 198
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural
genomics, IG-fold I-SET, RGD motif, homophilic adhesion,
arterial smooth muscle cells; 0.96A {Homo sapiens}
Length = 99
Score = 77.3 bits (191), Expect = 6e-18
Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 7/81 (8%)
Query: 234 VKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGS-----SLSISHVEESDSGV 288
V++ + VI+ QG P P + W + PV R + L I E D+G
Sbjct: 17 VREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGF 76
Query: 289 WNCVANNSEGQD--KMQLFIQ 307
+ C A N G + +L ++
Sbjct: 77 YTCKAVNEYGARQCEARLEVR 97
Score = 45.7 bits (109), Expect = 1e-06
Identities = 19/90 (21%), Positives = 33/90 (36%), Gaps = 19/90 (21%)
Query: 21 VVVDVGHRIELHCRVS----PKRLSSAKAWLKDGLVLRRNSDEV----------LVLDRV 66
V G + + RV P +WL++ +R + L +
Sbjct: 15 QSVREGQDVIMSIRVQGEPKPVV-----SWLRNRQPVRPDQRRFAEEAEGGLCRLRILAA 69
Query: 67 QREDAGMYQCHVSADDDSAQMSAQVILGGE 96
+R DAG Y C + + Q A++ + GE
Sbjct: 70 ERGDAGFYTCKAVNEYGARQCEARLEVRGE 99
Score = 43.4 bits (103), Expect = 6e-06
Identities = 15/70 (21%), Positives = 24/70 (34%), Gaps = 19/70 (27%)
Query: 106 VVVDVGHRIELHCRVS----PKRLSSAKAWLKDGLVLRRNSDEV----------LVLDRV 151
V G + + RV P +WL++ +R + L +
Sbjct: 15 QSVREGQDVIMSIRVQGEPKPVV-----SWLRNRQPVRPDQRRFAEEAEGGLCRLRILAA 69
Query: 152 QREDAGMYQC 161
+R DAG Y C
Sbjct: 70 ERGDAGFYTC 79
Score = 29.9 bits (68), Expect = 0.36
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 348 VKKDESVILPCSAQGNPLPTIK 369
V++ + VI+ QG P P +
Sbjct: 17 VREGQDVIMSIRVQGEPKPVVS 38
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin
domain, fibronectin type III repeat, CE adhesion; 1.80A
{Homo sapiens}
Length = 215
Score = 80.3 bits (198), Expect = 9e-18
Identities = 19/89 (21%), Positives = 35/89 (39%), Gaps = 8/89 (8%)
Query: 226 FEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI-------GSSLSI 278
+ + + V + C P TI W++ + S+ I S L +
Sbjct: 22 LQGPVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNY-SNIKIYNTPSASYLEV 80
Query: 279 SHVEESDSGVWNCVANNSEGQDKMQLFIQ 307
+ E+D G +NC A N GQ+ ++ +
Sbjct: 81 TPDSENDFGNYNCTAVNRIGQESLEFILV 109
Score = 50.6 bits (121), Expect = 2e-07
Identities = 13/83 (15%), Positives = 27/83 (32%), Gaps = 12/83 (14%)
Query: 21 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDE-----------VLVLDRVQRE 69
V G+++ + C V ++ W +DG +L ++ L +
Sbjct: 28 VYTWEGNQVNITCEVFAYPSATIS-WFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSEN 86
Query: 70 DAGMYQCHVSADDDSAQMSAQVI 92
D G Y C + ++
Sbjct: 87 DFGNYNCTAVNRIGQESLEFILV 109
Score = 42.9 bits (101), Expect = 5e-05
Identities = 13/77 (16%), Positives = 26/77 (33%), Gaps = 12/77 (15%)
Query: 99 EIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDE-----------VLV 147
++ V G+++ + C V ++ W +DG +L ++ L
Sbjct: 21 KLQGPVAVYTWEGNQVNITCEVFAYPSATIS-WFRDGQLLPSSNYSNIKIYNTPSASYLE 79
Query: 148 LDRVQREDAGMYQCHIE 164
+ D G Y C
Sbjct: 80 VTPDSENDFGNYNCTAV 96
Score = 35.2 bits (81), Expect = 0.021
Identities = 5/30 (16%), Positives = 9/30 (30%)
Query: 340 FEKHRILNVKKDESVILPCSAQGNPLPTIK 369
+ + + V + C P TI
Sbjct: 22 LQGPVAVYTWEGNQVNITCEVFAYPSATIS 51
>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor
tyrosine kinase, 3D-domain swapping, transferase; 1.90A
{Homo sapiens} SCOP: b.1.1.4
Length = 118
Score = 77.5 bits (191), Expect = 9e-18
Identities = 17/89 (19%), Positives = 34/89 (38%), Gaps = 11/89 (12%)
Query: 230 RILNVKKDESVI---LPCSAQGNPLPTIKWYKQDSPVEESDRIQ--------RIGSSLSI 278
R++++++ E + + +GNP PT+ W P+ ES I L
Sbjct: 10 RVVSLEEPELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLF 69
Query: 279 SHVEESDSGVWNCVANNSEGQDKMQLFIQ 307
+ ++G + +A N G +
Sbjct: 70 NKPTHYNNGNYTLIAKNPLGTANQTINGH 98
Score = 39.0 bits (91), Expect = 3e-04
Identities = 11/86 (12%), Positives = 23/86 (26%), Gaps = 22/86 (25%)
Query: 25 VGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRNSD-------------EVLVLDRVQR 68
+ + V P L WL +G LR + L+ ++
Sbjct: 19 LRLEHCIEFVVRGNPPPTLH----WLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTH 74
Query: 69 EDAGMYQCHVS--ADDDSAQMSAQVI 92
+ G Y + ++ +
Sbjct: 75 YNNGNYTLIAKNPLGTANQTINGHFL 100
Score = 38.6 bits (90), Expect = 5e-04
Identities = 15/79 (18%), Positives = 25/79 (31%), Gaps = 22/79 (27%)
Query: 99 EIASSNQVVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRNSD------------ 143
+ S + + + H IE V P L WL +G LR +
Sbjct: 10 RVVSLEEPELRLEHCIE--FVVRGNPPPTLH----WLHNGQPLRESKIIHVEYYQEGEIS 63
Query: 144 -EVLVLDRVQREDAGMYQC 161
L+ ++ + G Y
Sbjct: 64 EGCLLFNKPTHYNNGNYTL 82
Score = 31.3 bits (71), Expect = 0.18
Identities = 7/29 (24%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
Query: 344 RILNVKKDESVI---LPCSAQGNPLPTIK 369
R++++++ E + + +GNP PT+
Sbjct: 10 RVVSLEEPELRLEHCIEFVVRGNPPPTLH 38
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain, membrane,
transmembrane, receptor; 1.60A {Mus musculus} PDB:
3bp5_B 3rnq_B 3bov_A 3rnk_B
Length = 202
Score = 79.7 bits (196), Expect = 1e-17
Identities = 36/222 (16%), Positives = 61/222 (27%), Gaps = 63/222 (28%)
Query: 100 IASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEV-------------- 145
A VDVG + L C + + + ++ L N +
Sbjct: 6 TAPKEVYTVDVGSSVSLECDFDRRECTELE-GIRASLQKVENDTSLQSERATLLEEQLPL 64
Query: 146 ----LVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGA 201
+ VQ D+G Y+C + G + +
Sbjct: 65 GKALFHIPSVQVRDSGQYRCLVICGAAWDYKYLTVKVKA--------------------- 103
Query: 202 SLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDS 261
+ M RIL V V L C A+G PL + W
Sbjct: 104 ---------------------SYMRIDTRILEVPGTGEVQLTCQARGYPLAEVSWQNVSV 142
Query: 262 PVEESDRIQRIG--SSLSISHVEESDSGVWNCVANNSEGQDK 301
P S G S+ ++ S ++C+ N+ ++
Sbjct: 143 PANTSHIRTPEGLYQVTSVLRLKPQPSRNFSCMFWNAHMKEL 184
Score = 69.7 bits (170), Expect = 4e-14
Identities = 27/176 (15%), Positives = 53/176 (30%), Gaps = 34/176 (19%)
Query: 17 PSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEV---------------- 60
P VDVG + L C + + + ++ L N +
Sbjct: 8 PKEVYTVDVGSSVSLECDFDRRECTELE-GIRASLQKVENDTSLQSERATLLEEQLPLGK 66
Query: 61 --LVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGELVEIASSNQVVVDVGHRIELHC 118
+ VQ D+G Y+C V V + + I + V ++L C
Sbjct: 67 ALFHIPSVQVRDSGQYRCLVICGAAWDYKYLTVKVKASYMRIDTRILEVP-GTGEVQLTC 125
Query: 119 RVS--PK-RLSSAKAWLKDGLVL----RRNSDEVLVLD---RVQREDAGMYQCHIE 164
+ P +S W + R + + + R++ + + + C
Sbjct: 126 QARGYPLAEVS----WQNVSVPANTSHIRTPEGLYQVTSVLRLKPQPSRNFSCMFW 177
Score = 67.8 bits (165), Expect = 2e-13
Identities = 26/147 (17%), Positives = 43/147 (29%), Gaps = 39/147 (26%)
Query: 238 ESVILPCSAQGNPLPTIKWYKQDSPVEE-------------SDRIQRIGSSLSISHVEES 284
SV L C ++ + E +++ + I V+
Sbjct: 18 SSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPSVQVR 77
Query: 285 DSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHR 344
DSG + C+ D L ++ A+ M R
Sbjct: 78 DSGQYRCLVICGAAWDYKYLTVKV--------------------------KASYMRIDTR 111
Query: 345 ILNVKKDESVILPCSAQGNPLPTIKYR 371
IL V V L C A+G PL + ++
Sbjct: 112 ILEVPGTGEVQLTCQARGYPLAEVSWQ 138
Score = 26.9 bits (59), Expect = 8.1
Identities = 14/99 (14%), Positives = 31/99 (31%), Gaps = 14/99 (14%)
Query: 5 IQVKSSLSIEMSPSGQVVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVL----RRNS 57
+ VK S + + V ++L C+ P +S W + R
Sbjct: 97 LTVKVKASYMRIDTRILEVPGTGEVQLTCQARGYPLAEVS----WQNVSVPANTSHIRTP 152
Query: 58 DEVLVLD---RVQREDAGMYQCHVSADDDSAQMSAQVIL 93
+ + + R++ + + + C SA +
Sbjct: 153 EGLYQVTSVLRLKPQPSRNFSCMFWNAHMKELTSAIIDP 191
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3;
immunoglobulin, VCBP, V-type, V SET, immune system;
1.85A {Branchiostoma floridae}
Length = 250
Score = 80.3 bits (197), Expect = 2e-17
Identities = 36/235 (15%), Positives = 67/235 (28%), Gaps = 43/235 (18%)
Query: 103 SNQVVVDVGHRIELHCRVSPKRLSSAK--AWLKDGLVLRR-----------NSDEVLVLD 149
+V V G +EL C + +WLK R V
Sbjct: 9 HTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVES 68
Query: 150 RVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRG 209
+E G + L++ L + V D R Y C+ V + + + ++
Sbjct: 69 DSYKESFGDFLGRASVAN---LAAPTLRLTHVHPQDGGR-YWCQ-VAQWSIRTEFGLDAK 123
Query: 210 RLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESD-- 267
+ L S ++ V + + + C + WY + E +
Sbjct: 124 SVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETG 183
Query: 268 ----------------------RIQRIGS-SLSISHVEESDSGVWNCVANNSEGQ 299
R G+ +L I + +D+G C +G+
Sbjct: 184 TYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGE 238
Score = 66.5 bits (161), Expect = 1e-12
Identities = 35/237 (14%), Positives = 64/237 (27%), Gaps = 52/237 (21%)
Query: 9 SSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAK--AWLKDGLVLR------------ 54
S +++ + +V V G +EL C + +WLK R
Sbjct: 1 SIMTVR-TTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQ 59
Query: 55 --------------------------RNSDEVLVLDRVQREDAGMYQCHVSADDDS---- 84
+ L L V +D G Y C V+
Sbjct: 60 GEGLGFVESDSYKESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFG 119
Query: 85 -AQMSAQVILGGEL----VEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLR 139
S + + G V ++++ V VD G+ I + C + ++ W
Sbjct: 120 LDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVT-WYTGPTFFE 178
Query: 140 RNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVN 196
+ + + G+ + L+I +D R C
Sbjct: 179 NYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGR-VWCELAT 234
Score = 63.8 bits (154), Expect = 7e-12
Identities = 25/174 (14%), Positives = 43/174 (24%), Gaps = 52/174 (29%)
Query: 232 LNVKKDESVILPCS---AQGNPLPTIKWYKQDSPVEESDRIQRI---------------- 272
+ V +V LPCS A P I W K SP + +
Sbjct: 12 VEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSY 71
Query: 273 -----------------GSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHM 315
+L ++HV D G + C + +
Sbjct: 72 KESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFG----------LD 121
Query: 316 LSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIK 369
S L + N +S ++ V + + + C +
Sbjct: 122 AKSVVLKVTGHTPSNNVHVS------TAEVVQVDEGNDITMTCPCTDCANANVT 169
Score = 42.2 bits (98), Expect = 1e-04
Identities = 15/120 (12%), Positives = 28/120 (23%), Gaps = 31/120 (25%)
Query: 3 LFIQVKSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEV-- 60
S ++ +S + V VD G+ I + C + ++ W
Sbjct: 128 KVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVT-WYTGPTFFENYETGTYQ 186
Query: 61 ----------------------------LVLDRVQREDAGMYQCHVSADDDSAQMSAQVI 92
LV+ + DAG C ++
Sbjct: 187 PLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRSST 246
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo
sapiens}
Length = 99
Score = 75.8 bits (187), Expect = 2e-17
Identities = 22/82 (26%), Positives = 31/82 (37%), Gaps = 6/82 (7%)
Query: 232 LNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI----GSSLSISHVEESDSG 287
V D A G P PT W K + + + + G L I + SDSG
Sbjct: 16 TTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEIHKTDTSDSG 75
Query: 288 VWNCVANNSEGQD--KMQLFIQ 307
++ C NS G +L I+
Sbjct: 76 LYTCTVKNSAGSVSSSCKLTIK 97
Score = 45.0 bits (107), Expect = 2e-06
Identities = 14/84 (16%), Positives = 26/84 (30%), Gaps = 16/84 (19%)
Query: 21 VVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRNSDE---------VLVLDRVQR 68
V + + + P+ W KDG + + L + +
Sbjct: 16 TTVSSDSVAKFAVKATGEPRPTAI----WTKDGKAITQGGKYKLSEDKGGFFLEIHKTDT 71
Query: 69 EDAGMYQCHVSADDDSAQMSAQVI 92
D+G+Y C V S S ++
Sbjct: 72 SDSGLYTCTVKNSAGSVSSSCKLT 95
Score = 44.6 bits (106), Expect = 3e-06
Identities = 11/68 (16%), Positives = 21/68 (30%), Gaps = 16/68 (23%)
Query: 106 VVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRNSDE---------VLVLDRVQR 153
V + + + P+ W KDG + + L + +
Sbjct: 16 TTVSSDSVAKFAVKATGEPRPTAI----WTKDGKAITQGGKYKLSEDKGGFFLEIHKTDT 71
Query: 154 EDAGMYQC 161
D+G+Y C
Sbjct: 72 SDSGLYTC 79
Score = 31.5 bits (72), Expect = 0.088
Identities = 7/24 (29%), Positives = 7/24 (29%)
Query: 346 LNVKKDESVILPCSAQGNPLPTIK 369
V D A G P PT
Sbjct: 16 TTVSSDSVAKFAVKATGEPRPTAI 39
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing,
ATP-binding, calcium, calmodulin-binding,
cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A
2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Length = 100
Score = 75.4 bits (186), Expect = 3e-17
Identities = 15/82 (18%), Positives = 35/82 (42%), Gaps = 8/82 (9%)
Query: 234 VKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQ-RI-----GSSLSISHVEESDSG 287
+ + + + + C+ G P P + W + ++ + I ++L I V++ D G
Sbjct: 17 IDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGG 76
Query: 288 VWNCVANNSEGQD--KMQLFIQ 307
++ N G D + + I+
Sbjct: 77 LYTLSLGNEFGSDSATVNIHIR 98
Score = 44.6 bits (106), Expect = 3e-06
Identities = 15/87 (17%), Positives = 32/87 (36%), Gaps = 20/87 (22%)
Query: 21 VVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRNSDE-----------VLVLDRV 66
+ +D G + + C + P ++ W G + L++ V
Sbjct: 15 ISIDEGKVLTVACAFTGEPTPEVT----WSCGGRKIHSQEQGRFHIENTDDLTTLIIMDV 70
Query: 67 QREDAGMYQCHV--SADDDSAQMSAQV 91
Q++D G+Y + DSA ++ +
Sbjct: 71 QKQDGGLYTLSLGNEFGSDSATVNIHI 97
Score = 42.3 bits (100), Expect = 2e-05
Identities = 12/70 (17%), Positives = 25/70 (35%), Gaps = 18/70 (25%)
Query: 106 VVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRNSDE-----------VLVLDRV 151
+ +D G + + C + P ++ W G + L++ V
Sbjct: 15 ISIDEGKVLTVACAFTGEPTPEVT----WSCGGRKIHSQEQGRFHIENTDDLTTLIIMDV 70
Query: 152 QREDAGMYQC 161
Q++D G+Y
Sbjct: 71 QKQDGGLYTL 80
Score = 31.9 bits (73), Expect = 0.080
Identities = 4/22 (18%), Positives = 11/22 (50%)
Query: 348 VKKDESVILPCSAQGNPLPTIK 369
+ + + + + C+ G P P +
Sbjct: 17 IDEGKVLTVACAFTGEPTPEVT 38
>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK
receptor, receptor tyrosine kinase, 3D-domain swapping,
transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB:
1hcf_X
Length = 103
Score = 75.2 bits (185), Expect = 4e-17
Identities = 17/87 (19%), Positives = 36/87 (41%), Gaps = 9/87 (10%)
Query: 230 RILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQR---------IGSSLSISH 280
+ + D +P + +GNP P ++W+ + + ES I L + +
Sbjct: 9 FLESPTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDN 68
Query: 281 VEESDSGVWNCVANNSEGQDKMQLFIQ 307
++G + +A N G+D+ Q+
Sbjct: 69 PTHMNNGDYTLIAKNEYGKDEKQISAH 95
Score = 39.7 bits (93), Expect = 1e-04
Identities = 17/89 (19%), Positives = 24/89 (26%), Gaps = 23/89 (25%)
Query: 23 VDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRNSDE--------------VLVLDR 65
H + V PK L W +G +L + L LD
Sbjct: 13 PTSDHHWCIPFTVKGNPKPALQ----WFYNGAILNESKYICTKIHVTNHTEYHGCLQLDN 68
Query: 66 VQREDAGMYQCHVS--ADDDSAQMSAQVI 92
+ G Y D Q+SA +
Sbjct: 69 PTHMNNGDYTLIAKNEYGKDEKQISAHFM 97
Score = 37.4 bits (87), Expect = 9e-04
Identities = 13/74 (17%), Positives = 19/74 (25%), Gaps = 21/74 (28%)
Query: 108 VDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRNSDE--------------VLVLDR 150
H + V PK L W +G +L + L LD
Sbjct: 13 PTSDHHWCIPFTVKGNPKPALQ----WFYNGAILNESKYICTKIHVTNHTEYHGCLQLDN 68
Query: 151 VQREDAGMYQCHIE 164
+ G Y +
Sbjct: 69 PTHMNNGDYTLIAK 82
Score = 32.8 bits (75), Expect = 0.039
Identities = 6/26 (23%), Positives = 13/26 (50%)
Query: 344 RILNVKKDESVILPCSAQGNPLPTIK 369
+ + D +P + +GNP P ++
Sbjct: 9 FLESPTSDHHWCIPFTVKGNPKPALQ 34
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C,
C-protein, skeletal muscle fast-isoform, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 75.1 bits (185), Expect = 6e-17
Identities = 18/79 (22%), Positives = 29/79 (36%), Gaps = 3/79 (3%)
Query: 232 LNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESD---RIQRIGSSLSISHVEESDSGV 288
K E + L QG P P + W K +P++ S R + + SDSG
Sbjct: 34 YIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLDTSRVHVRTSDFDTVFFVRQAARSDSGE 93
Query: 289 WNCVANNSEGQDKMQLFIQ 307
+ +D + I+
Sbjct: 94 YELSVQIENMKDTATIRIR 112
Score = 50.5 bits (121), Expect = 4e-08
Identities = 21/101 (20%), Positives = 37/101 (36%), Gaps = 17/101 (16%)
Query: 5 IQVKSSLSIEMSPSGQVVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLR------R 55
I + + + VG ++ L P+ ++ W K G L R
Sbjct: 18 IAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVV----WTKGGAPLDTSRVHVR 73
Query: 56 NSDE--VLVLDRVQREDAGMYQCHVS--ADDDSAQMSAQVI 92
SD V + + R D+G Y+ V D+A + +V+
Sbjct: 74 TSDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRVV 114
Score = 48.2 bits (115), Expect = 2e-07
Identities = 16/72 (22%), Positives = 28/72 (38%), Gaps = 15/72 (20%)
Query: 104 NQVVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLR------RNSDE--VLVLDRVQ 152
+ VG ++ L P+ ++ W K G L R SD V + +
Sbjct: 32 QTYIRKVGEQLNLVVPFQGKPRPQVV----WTKGGAPLDTSRVHVRTSDFDTVFFVRQAA 87
Query: 153 REDAGMYQCHIE 164
R D+G Y+ ++
Sbjct: 88 RSDSGEYELSVQ 99
Score = 33.9 bits (78), Expect = 0.022
Identities = 7/24 (29%), Positives = 9/24 (37%)
Query: 346 LNVKKDESVILPCSAQGNPLPTIK 369
K E + L QG P P +
Sbjct: 34 YIRKVGEQLNLVVPFQGKPRPQVV 57
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo
sapiens}
Length = 103
Score = 74.6 bits (184), Expect = 7e-17
Identities = 21/95 (22%), Positives = 34/95 (35%), Gaps = 7/95 (7%)
Query: 220 LSAAKMFEKH-RILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGS---- 274
L A R V ++ + Q P +KWY ++ES +I +
Sbjct: 5 LDHAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVL 64
Query: 275 SLSISHVEESDSGVWNCVANNSEGQD--KMQLFIQ 307
+L I DSG + V N +G+ L +
Sbjct: 65 TLEILDCHTDDSGTYRAVCTNYKGEASDYATLDVT 99
Score = 42.7 bits (101), Expect = 1e-05
Identities = 14/84 (16%), Positives = 25/84 (29%), Gaps = 16/84 (19%)
Query: 21 VVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRNSD---------EVLVLDRVQR 68
V G V P + W +G+ L+ +S L +
Sbjct: 18 HRVPCGQNTRFILNVQSKPTAEVK----WYHNGVELQESSKIHYTNTSGVLTLEILDCHT 73
Query: 69 EDAGMYQCHVSADDDSAQMSAQVI 92
+D+G Y+ + A A +
Sbjct: 74 DDSGTYRAVCTNYKGEASDYATLD 97
Score = 41.5 bits (98), Expect = 4e-05
Identities = 12/68 (17%), Positives = 21/68 (30%), Gaps = 16/68 (23%)
Query: 106 VVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRNSD---------EVLVLDRVQR 153
V G V P + W +G+ L+ +S L +
Sbjct: 18 HRVPCGQNTRFILNVQSKPTAEVK----WYHNGVELQESSKIHYTNTSGVLTLEILDCHT 73
Query: 154 EDAGMYQC 161
+D+G Y+
Sbjct: 74 DDSGTYRA 81
Score = 30.7 bits (70), Expect = 0.20
Identities = 7/37 (18%), Positives = 11/37 (29%), Gaps = 1/37 (2%)
Query: 334 LSAAKMFEKH-RILNVKKDESVILPCSAQGNPLPTIK 369
L A R V ++ + Q P +K
Sbjct: 5 LDHAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVK 41
>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin
domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr
virus}
Length = 201
Score = 77.0 bits (189), Expect = 8e-17
Identities = 20/196 (10%), Positives = 45/196 (22%), Gaps = 57/196 (29%)
Query: 113 RIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLS 172
R+ + + LV+ G Y C ++ G+ +
Sbjct: 42 RMHHDVIFIEWPFRGFFDIHRSA------NTFFLVVTAANISHDGNYLCRMKLGETEVTK 95
Query: 173 SGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKH-RI 231
L + H
Sbjct: 96 QEHLSVV------------------------------------------KPLTLSVHSER 113
Query: 232 LNVKKDESVILPCSAQGNPLPTIKWYKQD----SPVEESDRIQRIGS-SLSIS---HVEE 283
+ + C+ P P ++W + +P + + + SLS++ + +
Sbjct: 114 SQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPK 173
Query: 284 SDSGVWNCVANNSEGQ 299
CV N + +
Sbjct: 174 PWHLPVTCVGKNDKEE 189
Score = 73.1 bits (179), Expect = 2e-15
Identities = 20/155 (12%), Positives = 42/155 (27%), Gaps = 19/155 (12%)
Query: 19 GQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHV 78
G+ V +G R+ + + LV+ G Y C +
Sbjct: 34 GEEQVLIG-RMHHDVIFIEWPFRGFFDIHRSA------NTFFLVVTAANISHDGNYLCRM 86
Query: 79 SADDDSAQMSAQVILGGELVEIASSNQVVVDVGHRIELHCRVS-----------PKRLSS 127
+ + + L S + + + C V+ P+ +
Sbjct: 87 KLGETEVTKQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEP 146
Query: 128 AKAWLKDGLVLRRN-SDEVLVLDRVQREDAGMYQC 161
A G++ ++ S V V + + C
Sbjct: 147 APTAANGGVMKEKDGSLSVAVDLSLPKPWHLPVTC 181
Score = 58.9 bits (142), Expect = 2e-10
Identities = 19/156 (12%), Positives = 33/156 (21%), Gaps = 51/156 (32%)
Query: 238 ESVILPCSAQ---GNPLPTIKWYK-------------------QDSPVEESDRIQRIGS- 274
E V L + P + W+K + P I R +
Sbjct: 7 ERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANT 66
Query: 275 -SLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRL 333
L ++ S G + C E + L +
Sbjct: 67 FFLVVTAANISHDGNYLCRMKLGET---------------EVTKQEHLSVV--------- 102
Query: 334 LSAAKMFEKH-RILNVKKDESVILPCSAQGNPLPTI 368
H + + C+ P P +
Sbjct: 103 --KPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHV 136
Score = 41.9 bits (98), Expect = 1e-04
Identities = 14/97 (14%), Positives = 30/97 (30%), Gaps = 13/97 (13%)
Query: 2 QLFIQVKSSLSIEMSPSGQVVVDVGHRIELHCRVS-----------PKRLSSAKAWLKDG 50
Q + V L++ + + + C V+ P+ + A G
Sbjct: 96 QEHLSVVKPLTLSVHSERSQFP-DFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGG 154
Query: 51 LVLRRN-SDEVLVLDRVQREDAGMYQCHVSADDDSAQ 86
++ ++ S V V + + C D + A
Sbjct: 155 VMKEKDGSLSVAVDLSLPKPWHLPVTCVGKNDKEEAH 191
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain,
beta-sandwhich, I-SET, structural protein; 2.10A {Homo
sapiens} SCOP: b.1.1.4
Length = 99
Score = 73.8 bits (182), Expect = 1e-16
Identities = 20/82 (24%), Positives = 26/82 (31%), Gaps = 6/82 (7%)
Query: 225 MFEKH-RILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI-----GSSLSI 278
+ + V + G P P +WYK +E SDRI L I
Sbjct: 7 KIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVI 66
Query: 279 SHVEESDSGVWNCVANNSEGQD 300
V DS A N G+
Sbjct: 67 RDVTGEDSASIMVKAINIAGET 88
Score = 41.9 bits (99), Expect = 2e-05
Identities = 14/69 (20%), Positives = 20/69 (28%), Gaps = 17/69 (24%)
Query: 21 VVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRNSDE----------VLVLDRVQ 67
V G RV P W K+G+ + R+ LV+ V
Sbjct: 15 QTVGQGSDAHFRVRVVGKPDPECE----WYKNGVKIERSDRIYWYWPEDNVCELVIRDVT 70
Query: 68 REDAGMYQC 76
ED+
Sbjct: 71 GEDSASIMV 79
Score = 41.9 bits (99), Expect = 2e-05
Identities = 14/69 (20%), Positives = 20/69 (28%), Gaps = 17/69 (24%)
Query: 106 VVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRNSDE----------VLVLDRVQ 152
V G RV P W K+G+ + R+ LV+ V
Sbjct: 15 QTVGQGSDAHFRVRVVGKPDPECE----WYKNGVKIERSDRIYWYWPEDNVCELVIRDVT 70
Query: 153 REDAGMYQC 161
ED+
Sbjct: 71 GEDSASIMV 79
Score = 28.8 bits (65), Expect = 0.94
Identities = 4/32 (12%), Positives = 8/32 (25%), Gaps = 1/32 (3%)
Query: 339 MFEKH-RILNVKKDESVILPCSAQGNPLPTIK 369
+ + V + G P P +
Sbjct: 7 KIFERIQSQTVGQGSDAHFRVRVVGKPDPECE 38
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed
death-1 ligand 1, complex, costimulatory, immune system;
2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Length = 222
Score = 77.0 bits (189), Expect = 1e-16
Identities = 31/225 (13%), Positives = 71/225 (31%), Gaps = 36/225 (16%)
Query: 100 IASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMY 159
+ VV+ G + + C+ + L +V D+ ++ ED +
Sbjct: 5 TVPKDLYVVEYGSNMTIECKFPV----EKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQ 60
Query: 160 QCHIEDG-----KYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLT 214
L + L I V D Y+C S + R+++
Sbjct: 61 HSSYRQRARLLKDQLSLGNAALQITDVKLQDA-GVYRCM-------ISYGGADYKRITVK 112
Query: 215 ENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQD----------SPVE 264
+ + + ++ L C A+G P + W D + +
Sbjct: 113 ----VNAPYNKINQRILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSK 168
Query: 265 ESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDK--MQLFIQ 307
+++ + S+L I+ + + ++ C + ++ +L I
Sbjct: 169 REEKLFNVTSTLRIN---TTTNEIFYCTFRRLDPEENHTAELVIP 210
Score = 63.1 bits (153), Expect = 9e-12
Identities = 34/208 (16%), Positives = 61/208 (29%), Gaps = 49/208 (23%)
Query: 17 PSGQVVVDVGHRIELHCRVSPKRLSSAK----AWLKDG--LVLRRNSDEV---------- 60
P VV+ G + + C+ ++ W + ++ + +E
Sbjct: 7 PKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQ 66
Query: 61 ---------------LVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGELVEIASSNQ 105
L + V+ +DAG+Y+C +S + V + +I
Sbjct: 67 RARLLKDQLSLGNAALQITDVKLQDAGVYRCMISYGGADYK-RITVKVNAPYNKINQRIL 125
Query: 106 VVVDVGHRIELHCRVS--PKRLSSAKAWLK-DGLVLRRNSDEVLVLD-----------RV 151
VV V EL C+ PK W D VL + R+
Sbjct: 126 VVDPVTSEHELTCQAEGYPKAEVI---WTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRI 182
Query: 152 QREDAGMYQCHIEDGKYHMLSSGELIIH 179
++ C + EL+I
Sbjct: 183 NTTTNEIFYCTFRRLDPEENHTAELVIP 210
Score = 47.3 bits (112), Expect = 2e-06
Identities = 17/166 (10%), Positives = 46/166 (27%), Gaps = 55/166 (33%)
Query: 234 VKKDESVILPCSAQGNPLP-----TIKWYKQDSPVE----------------------ES 266
V+ ++ + C + W +D +
Sbjct: 13 VEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLK 72
Query: 267 DRIQRIGSSLSISHVEESDSGVWNCVANNSEGQ-DKMQLFIQYAHGKYHMLSSGELIIHQ 325
D++ ++L I+ V+ D+GV+ C+ + ++ +
Sbjct: 73 DQLSLGNAALQITDVKLQDAGVYRCMISYGGADYKRITV--------------------- 111
Query: 326 VDEKNKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKYR 371
++ + + ++ L C A+G P + +
Sbjct: 112 ------KVNAPYNKINQRILVVDPVTSEHELTCQAEGYPKAEVIWT 151
>2ens_A Advanced glycosylation END product-specific receptor;
beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 96
Score = 73.6 bits (181), Expect = 1e-16
Identities = 17/68 (25%), Positives = 25/68 (36%), Gaps = 5/68 (7%)
Query: 234 VKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVA 293
V +V L C P P I W K P+ L + + D G ++CVA
Sbjct: 22 VAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPP-----SPVLILPEIGPQDQGTYSCVA 76
Query: 294 NNSEGQDK 301
+S +
Sbjct: 77 THSSHGPQ 84
Score = 63.2 bits (154), Expect = 7e-13
Identities = 22/85 (25%), Positives = 34/85 (40%), Gaps = 8/85 (9%)
Query: 12 SIEMSPSGQVVVDVGHRIELHCRVS---PKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQR 68
+ + P G V G + L C V ++ W+KDG+ L VL+L +
Sbjct: 12 QLVVEPEGGAVA-PGGTVTLTCEVPAQPSPQIH----WMKDGVPLPLPPSPVLILPEIGP 66
Query: 69 EDAGMYQCHVSADDDSAQMSAQVIL 93
+D G Y C + Q S V +
Sbjct: 67 QDQGTYSCVATHSSHGPQESRAVSI 91
Score = 56.3 bits (136), Expect = 2e-10
Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 7/59 (11%)
Query: 106 VVVDVGHRIELHCRVS---PKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQC 161
V G + L C V ++ W+KDG+ L VL+L + +D G Y C
Sbjct: 20 GAVAPGGTVTLTCEVPAQPSPQIH----WMKDGVPLPLPPSPVLILPEIGPQDQGTYSC 74
Score = 33.5 bits (77), Expect = 0.017
Identities = 7/22 (31%), Positives = 8/22 (36%)
Query: 348 VKKDESVILPCSAQGNPLPTIK 369
V +V L C P P I
Sbjct: 22 VAPGGTVTLTCEVPAQPSPQIH 43
>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon,
OKT3 FAB, signaling protein/antibiotic complex; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*
Length = 204
Score = 76.5 bits (187), Expect = 1e-16
Identities = 41/218 (18%), Positives = 72/218 (33%), Gaps = 31/218 (14%)
Query: 90 QVILGGELVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDE--VLV 147
Q I G LV++ + + L C K ++ W KDG ++ +++
Sbjct: 2 QSIKGNHLVKVYDYQE-----DGSVLLTCDAEAKNIT----WFKDGKMIGFLTEDKKKWN 52
Query: 148 LDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVN 207
L ++ GMYQC K L + D++ + + + N
Sbjct: 53 LGSNAKDPRGMYQCKGSQNKSKPLQV-YYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGN 111
Query: 208 RGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESD 267
+T+ +S + +VIL C P I W D + +
Sbjct: 112 EEMGGITQTPYKVSIS-------------GTTVILTCPQ--YPGSEILWQHNDKNIGGDE 156
Query: 268 RIQRI---GSSLSISHV-EESDSGVWNCVANNSEGQDK 301
+ I LS+ E SG + C S+ +D
Sbjct: 157 DDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDA 194
Score = 62.2 bits (150), Expect = 2e-11
Identities = 31/193 (16%), Positives = 54/193 (27%), Gaps = 50/193 (25%)
Query: 18 SGQVVVDV-----GHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDE--VLVLDRVQRED 70
G +V V + L C K ++ W KDG ++ +++ L ++
Sbjct: 5 KGNHLVKVYDYQEDGSVLLTCDAEAKNIT----WFKDGKMIGFLTEDKKKWNLGSNAKDP 60
Query: 71 AGMYQC---------------------------HVSADDDSAQMSAQVILGGELVEIASS 103
GMYQC E+ I +
Sbjct: 61 RGMYQCKGSQNKSKPLQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNEEMGGITQT 120
Query: 104 NQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSD---------EVLVLDRVQRE 154
V G + L C P S W + + + D + + + + E
Sbjct: 121 PYKVSISGTTVILTCPQYPG---SEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELE 177
Query: 155 DAGMYQCHIEDGK 167
+G Y C+ K
Sbjct: 178 QSGYYVCYPRGSK 190
Score = 59.1 bits (142), Expect = 2e-10
Identities = 21/154 (13%), Positives = 47/154 (30%), Gaps = 19/154 (12%)
Query: 224 KMFEKHRILNVKKDE---SVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISH 280
+ + + ++ V + SV+L C I W+K + ++ ++
Sbjct: 2 QSIKGNHLVKVYDYQEDGSVLLTC---DAEAKNITWFKDGKMIGFLTEDKKK---WNLGS 55
Query: 281 VEESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMF 340
+ G++ C + ++ + L + Y G + + + +
Sbjct: 56 NAKDPRGMYQCKGSQNKSKP---LQVYYRMGSADDAKKDAAKKDDAKKDDAKKDGSDGNE 112
Query: 341 EKHRILNVKKD-----ESVILPCSAQGNPLPTIK 369
E I +VIL C P I
Sbjct: 113 EMGGITQTPYKVSISGTTVILTCPQ--YPGSEIL 144
Score = 41.4 bits (96), Expect = 2e-04
Identities = 12/83 (14%), Positives = 26/83 (31%), Gaps = 12/83 (14%)
Query: 6 QVKSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSD------- 58
+ ++ + V G + L C P S W + + + D
Sbjct: 108 SDGNEEMGGITQTPYKVSISGTTVILTCPQYPG---SEILWQHNDKNIGGDEDDKNIGSD 164
Query: 59 --EVLVLDRVQREDAGMYQCHVS 79
+ + + + E +G Y C+
Sbjct: 165 EDHLSLKEFSELEQSGYYVCYPR 187
>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core
protein; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4
Length = 98
Score = 73.3 bits (180), Expect = 2e-16
Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Query: 230 RILNVKKDESVILPCSAQ-GNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGV 288
R +V+ V C+A+ +P T+ W + + S + G L+I +V+ SD+G
Sbjct: 18 RSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFNGI-LTIRNVQPSDAGT 76
Query: 289 WNCVANNSEGQDKMQLFIQ 307
+ C +N D+ +
Sbjct: 77 YVCTGSNMFAMDQGTATLH 95
Score = 51.3 bits (123), Expect = 1e-08
Identities = 18/88 (20%), Positives = 28/88 (31%), Gaps = 12/88 (13%)
Query: 13 IEMSPSGQVVVDVGHRIELHCRV---SPK-RLSSAKAWLKDGLVL----RRNSDEVLVLD 64
+ + V G + C SP L W + + + +L +
Sbjct: 12 VTVEEQRSQSVRPGADVTFICTAKSKSPAYTLV----WTRLHNGKLPSRAMDFNGILTIR 67
Query: 65 RVQREDAGMYQCHVSADDDSAQMSAQVI 92
VQ DAG Y C S Q +A +
Sbjct: 68 NVQPSDAGTYVCTGSNMFAMDQGTATLH 95
Score = 47.1 bits (112), Expect = 4e-07
Identities = 16/73 (21%), Positives = 24/73 (32%), Gaps = 12/73 (16%)
Query: 97 LVEIASSNQVVVDVGHRIELHCRV---SPK-RLSSAKAWLKDGLVL----RRNSDEVLVL 148
+V + V G + C SP L W + + + +L +
Sbjct: 11 MVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLV----WTRLHNGKLPSRAMDFNGILTI 66
Query: 149 DRVQREDAGMYQC 161
VQ DAG Y C
Sbjct: 67 RNVQPSDAGTYVC 79
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling
protein complex, angiogenesis, glycoprotein, HOST-virus
interaction, membrane; HET: NAG BMA; 2.70A {Homo
sapiens} PDB: 2x1x_R*
Length = 213
Score = 76.4 bits (187), Expect = 2e-16
Identities = 31/224 (13%), Positives = 64/224 (28%), Gaps = 58/224 (25%)
Query: 105 QVVVDVGHRIELHCRVSP-------KRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAG 157
+ + + + C S K ++ DG + +S + + AG
Sbjct: 18 YITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAG 77
Query: 158 MYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENK 217
M C + S +++ L+ + + ++ G
Sbjct: 78 MVFCEAKINDESYQSIMYIVVVVGYRIYDV---------VLSPSHGIELSVG-------- 120
Query: 218 RLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLP--TIKWYKQDSPVEESDRIQR---- 271
E ++L C+A+ W S + + R
Sbjct: 121 --------------------EKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKT 160
Query: 272 --------IGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQ 307
S+L+I V SD G++ C A++ K F++
Sbjct: 161 QSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVR 204
Score = 72.1 bits (176), Expect = 6e-15
Identities = 31/189 (16%), Positives = 61/189 (32%), Gaps = 29/189 (15%)
Query: 20 QVVVDVGHRIELHCRVSP-------KRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAG 72
+ + + + C S K ++ DG + +S + + AG
Sbjct: 18 YITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAG 77
Query: 73 MYQCHVSADDDSAQMSAQVILGGEL----VEIASSNQVVVDVGHRIELHCRVSPKRLSSA 128
M C +D+S Q +++ V ++ S+ + + VG ++ L+C +
Sbjct: 78 MVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGI 137
Query: 129 K-AWLKDGLVLRRNSDE-----------------VLVLDRVQREDAGMYQCHIEDGKYHM 170
W + L +D V R D G+Y C G
Sbjct: 138 DFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTK 197
Query: 171 LSSGELIIH 179
+S + +H
Sbjct: 198 KNSTFVRVH 206
Score = 55.6 bits (133), Expect = 3e-09
Identities = 19/144 (13%), Positives = 44/144 (30%), Gaps = 26/144 (18%)
Query: 232 LNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI----GSSLSISHVEESDSG 287
+ K+++V++PC + + RI +I S +G
Sbjct: 19 ITENKNKTVVIPCLGS-ISNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAG 77
Query: 288 VWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILN 347
+ C A ++ + S I+ V + + + +
Sbjct: 78 MVFCEAKINDESYQ----------------SIMYIVVVVGYRIYDV-----VLSPSHGIE 116
Query: 348 VKKDESVILPCSAQGNPLPTIKYR 371
+ E ++L C+A+ I +
Sbjct: 117 LSVGEKLVLNCTARTELNVGIDFN 140
Score = 50.6 bits (120), Expect = 2e-07
Identities = 19/108 (17%), Positives = 35/108 (32%), Gaps = 18/108 (16%)
Query: 3 LFIQVKSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAK-AWLKDGLVLRRNSDE-- 59
+ + + +SPS + + VG ++ L+C + W +
Sbjct: 97 VVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNR 156
Query: 60 ---------------VLVLDRVQREDAGMYQCHVSADDDSAQMSAQVI 92
L +D V R D G+Y C S+ + + S V
Sbjct: 157 DLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVR 204
>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1
(isoform 2); hydrolase, immunoglobulin domain, nucleus,
protease; 1.15A {Homo sapiens}
Length = 91
Score = 72.4 bits (178), Expect = 3e-16
Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 5/67 (7%)
Query: 233 NVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCV 292
+ +++L C A G+P+P +W+K + P+ + + +V+ G + C
Sbjct: 14 KLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETK-----KLYMVPYVDLEHQGTYWCH 68
Query: 293 ANNSEGQ 299
N
Sbjct: 69 VYNDRDS 75
Score = 65.4 bits (160), Expect = 9e-14
Identities = 23/87 (26%), Positives = 34/87 (39%), Gaps = 8/87 (9%)
Query: 9 SSLSIEMSPSGQVVVDVGHRIELHCRVS---PKRLSSAKAWLKDGLVLRRNSDEVLVLDR 65
S L I + P+ Q ++ G + L C W K+ L L + ++ ++
Sbjct: 2 SKLQICVEPTSQKLM-PGSTLVLQCVAVGSPIPHYQ----WFKNELPLTHETKKLYMVPY 56
Query: 66 VQREDAGMYQCHVSADDDSAQMSAQVI 92
V E G Y CHV D DS I
Sbjct: 57 VDLEHQGTYWCHVYNDRDSQDSKKVEI 83
Score = 57.3 bits (139), Expect = 7e-11
Identities = 13/62 (20%), Positives = 22/62 (35%), Gaps = 7/62 (11%)
Query: 106 VVVDVGHRIELHCRVS---PKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCH 162
+ G + L C W K+ L L + ++ ++ V E G Y CH
Sbjct: 13 QKLMPGSTLVLQCVAVGSPIPHYQ----WFKNELPLTHETKKLYMVPYVDLEHQGTYWCH 68
Query: 163 IE 164
+
Sbjct: 69 VY 70
Score = 33.5 bits (77), Expect = 0.017
Identities = 6/23 (26%), Positives = 13/23 (56%)
Query: 347 NVKKDESVILPCSAQGNPLPTIK 369
+ +++L C A G+P+P +
Sbjct: 14 KLMPGSTLVLQCVAVGSPIPHYQ 36
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein;
2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Length = 154
Score = 73.3 bits (180), Expect = 7e-16
Identities = 27/114 (23%), Positives = 46/114 (40%), Gaps = 20/114 (17%)
Query: 234 VKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI-----GSSLSISHVEESDSGV 288
V + + C +G P P + W+K D+PV+ES Q SL+IS V D
Sbjct: 53 VVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAK 112
Query: 289 WNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEK 342
+ C A NS G+ + EL++ + ++ + + E+
Sbjct: 113 YTCKAVNSLGEAT---------------CTAELLVETMGKEGEGEGEGEEDEEE 151
Score = 41.0 bits (96), Expect = 1e-04
Identities = 15/86 (17%), Positives = 27/86 (31%), Gaps = 19/86 (22%)
Query: 21 VVVDVGHRIELHCRVS----PKRLSSAKAWLKDGLVLRRNSDE----------VLVLDRV 66
+ V G C+V P+ W KD ++ + L + V
Sbjct: 51 MEVVEGSAARFDCKVEGYPDPE-----VMWFKDDNPVKESRHFQIDYDEEGNCSLTISEV 105
Query: 67 QREDAGMYQCHVSADDDSAQMSAQVI 92
+D Y C A +A+++
Sbjct: 106 CGDDDAKYTCKAVNSLGEATCTAELL 131
Score = 40.2 bits (94), Expect = 2e-04
Identities = 18/115 (15%), Positives = 31/115 (26%), Gaps = 27/115 (23%)
Query: 68 REDAGMYQCHVSADDDSAQMSAQVILGGELVEIAS-------SNQVVVDVGHRIELHCRV 120
R+ +G + A + E + VV+ G C+V
Sbjct: 7 RKASGSSPTSPINANKVENEDAFLEEVAEEKPHVKPYFTKTILDMEVVE-GSAARFDCKV 65
Query: 121 S----PKRLSSAKAWLKDGLVLRRNSDE----------VLVLDRVQREDAGMYQC 161
P+ W KD ++ + L + V +D Y C
Sbjct: 66 EGYPDPE-----VMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTC 115
Score = 29.1 bits (65), Expect = 1.5
Identities = 5/22 (22%), Positives = 9/22 (40%)
Query: 348 VKKDESVILPCSAQGNPLPTIK 369
V + + C +G P P +
Sbjct: 53 VVEGSAARFDCKVEGYPDPEVM 74
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 77.1 bits (189), Expect = 7e-16
Identities = 35/210 (16%), Positives = 68/210 (32%), Gaps = 49/210 (23%)
Query: 102 SSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQC 161
VDVG + L C+V + L A W+ L + L
Sbjct: 164 QVPNASVDVGDDVLLRCQVEGRGLEQAG-WILTELEQSATVMKSGGLP------------ 210
Query: 162 HIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLS 221
S G + + + +R ++ C N + G + +SV ++++
Sbjct: 211 ----------SLGLTLANVTSDLNR-KNVTCWAENDV-GRAEVSVQ---VNVSF------ 249
Query: 222 AAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRI-----------Q 270
++ + +P S G P P+++W S + E+ I
Sbjct: 250 ----PASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANET 305
Query: 271 RIGSSLSISHVEESDSGVWNCVANNSEGQD 300
L ++ ++G + +A N GQ
Sbjct: 306 VRHGCLRLNQPTHVNNGNYTLLAANPFGQA 335
Score = 65.1 bits (158), Expect = 6e-12
Identities = 18/149 (12%), Positives = 40/149 (26%), Gaps = 32/149 (21%)
Query: 224 KMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQD---SPVEESDRIQRIGSSLSISH 280
+ + +V + V+L C +G L W + S +
Sbjct: 160 TLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLANV 219
Query: 281 VEESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMF 340
+ + C A N G+ ++ + + V
Sbjct: 220 TSDLNRKNVTCWAENDVGRAEVSVQV------------------NVSFPA---------- 251
Query: 341 EKHRILNVKKDESVILPCSAQGNPLPTIK 369
++ + +P S G P P+++
Sbjct: 252 -SVQLHTAVEMHHWCIPFSVDGQPAPSLR 279
Score = 59.0 bits (142), Expect = 7e-10
Identities = 28/174 (16%), Positives = 44/174 (25%), Gaps = 34/174 (19%)
Query: 15 MSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEV--------LVLDRV 66
VDVG + L C+V + L A W+ L + + +
Sbjct: 162 KVQVPNASVDVGDDVLLRCQVEGRGLEQAG-WILTELEQSATVMKSGGLPSLGLTLANVT 220
Query: 67 QREDAGMYQCHVS--ADDDSAQMSAQVILGGELVEIASSNQVVVDVGHRIELHCRVSPKR 124
+ C + V AS H + V +
Sbjct: 221 SDLNRKNVTCWAENDVGRAEVSVQVNVS------FPASVQLHTAVEMHHWCIPFSVDGQP 274
Query: 125 LSSAKAWLKDGLVLRRNS----------------DEVLVLDRVQREDAGMYQCH 162
S + WL +G VL S L L++ + G Y
Sbjct: 275 APSLR-WLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLL 327
Score = 33.2 bits (75), Expect = 0.12
Identities = 16/84 (19%), Positives = 26/84 (30%), Gaps = 19/84 (22%)
Query: 27 HRIELHCRVSPKRLSSAKAWLKDGLVLRRNS----------------DEVLVLDRVQRED 70
H + V + S + WL +G VL S L L++ +
Sbjct: 262 HHWCIPFSVDGQPAPSLR-WLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVN 320
Query: 71 AGMYQCHVS--ADDDSAQMSAQVI 92
G Y + SA + A +
Sbjct: 321 NGNYTLLAANPFGQASASIMAAFM 344
Score = 32.4 bits (73), Expect = 0.22
Identities = 12/96 (12%), Positives = 27/96 (28%), Gaps = 5/96 (5%)
Query: 274 SSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRL 333
LS+ + S + +C Q + + + + H +
Sbjct: 101 QGLSLQELVLSGNP-LHCSCALRWLQRWEEEGLGGVPEQKLQCHGQGPLAHMPNAS---- 155
Query: 334 LSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIK 369
+ + +V + V+L C +G L
Sbjct: 156 CGVPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAG 191
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 110
Score = 71.6 bits (176), Expect = 8e-16
Identities = 21/86 (24%), Positives = 31/86 (36%), Gaps = 7/86 (8%)
Query: 221 SAAKMFEKH-RILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGS----- 274
S A FE + + + V C GNP P I W+K + I
Sbjct: 6 SGAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGT 65
Query: 275 -SLSISHVEESDSGVWNCVANNSEGQ 299
SL + D G + +A N +G+
Sbjct: 66 CSLHTTASTLDDDGNYTIMAANPQGR 91
Score = 46.6 bits (111), Expect = 7e-07
Identities = 16/86 (18%), Positives = 28/86 (32%), Gaps = 18/86 (20%)
Query: 21 VVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRNSDEV-----------LVLDRV 66
+ G + CRV+ PK ++ W KDG + SD L
Sbjct: 18 YKIFEGMPVTFTCRVAGNPKPKIY----WFKDGKQISPKSDHYTIQRDLDGTCSLHTTAS 73
Query: 67 QREDAGMYQCHVSADDDSAQMSAQVI 92
+D G Y + + +++
Sbjct: 74 TLDDDGNYTIMAANPQGRISCTGRLM 99
Score = 45.0 bits (107), Expect = 3e-06
Identities = 19/93 (20%), Positives = 33/93 (35%), Gaps = 18/93 (19%)
Query: 106 VVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRNSDEV-----------LVLDRV 151
+ G + CRV+ PK ++ W KDG + SD L
Sbjct: 18 YKIFEGMPVTFTCRVAGNPKPKIY----WFKDGKQISPKSDHYTIQRDLDGTCSLHTTAS 73
Query: 152 QREDAGMYQCHIEDGKYHMLSSGELIIHQVDES 184
+D G Y + + + +G L++ V+
Sbjct: 74 TLDDDGNYTIMAANPQGRISCTGRLMVQAVNSG 106
Score = 29.6 bits (67), Expect = 0.59
Identities = 11/36 (30%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
Query: 335 SAAKMFEKH-RILNVKKDESVILPCSAQGNPLPTIK 369
S A FE + + + V C GNP P I
Sbjct: 6 SGAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIY 41
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane,
cytoplasm, cytoskeleton, disease mutation,
immunoglobulin domain; NMR {Homo sapiens}
Length = 116
Score = 71.3 bits (175), Expect = 1e-15
Identities = 17/75 (22%), Positives = 29/75 (38%), Gaps = 6/75 (8%)
Query: 232 LNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI------GSSLSISHVEESD 285
V + +SV L C P P + W + + V+ + + +L I V + D
Sbjct: 25 KKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKDVNKKD 84
Query: 286 SGVWNCVANNSEGQD 300
+G + A N G
Sbjct: 85 AGWYTVSAVNEAGVT 99
Score = 47.0 bits (112), Expect = 6e-07
Identities = 16/86 (18%), Positives = 36/86 (41%), Gaps = 18/86 (20%)
Query: 21 VVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRNSDEV-----------LVLDRV 66
V G ++L C++S P +L W ++ +++ N+D + L++ V
Sbjct: 25 KKVLEGDSVKLECQISAIPPPKLF----WKRNNEMVQFNTDRISLYQDNTGRVTLLIKDV 80
Query: 67 QREDAGMYQCHVSADDDSAQMSAQVI 92
++DAG Y + + ++
Sbjct: 81 NKKDAGWYTVSAVNEAGVTTCNTRLD 106
Score = 45.5 bits (108), Expect = 2e-06
Identities = 16/73 (21%), Positives = 36/73 (49%), Gaps = 19/73 (26%)
Query: 103 SNQVVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRNSDEV-----------LVL 148
++ V++ G ++L C++S P +L W ++ +++ N+D + L++
Sbjct: 23 QSKKVLE-GDSVKLECQISAIPPPKLF----WKRNNEMVQFNTDRISLYQDNTGRVTLLI 77
Query: 149 DRVQREDAGMYQC 161
V ++DAG Y
Sbjct: 78 KDVNKKDAGWYTV 90
Score = 30.8 bits (70), Expect = 0.21
Identities = 7/24 (29%), Positives = 10/24 (41%)
Query: 346 LNVKKDESVILPCSAQGNPLPTIK 369
V + +SV L C P P +
Sbjct: 25 KKVLEGDSVKLECQISAIPPPKLF 48
>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet,
STRU genomics, berkeley structural genomics center,
BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A
Length = 137
Score = 70.8 bits (173), Expect = 4e-15
Identities = 21/97 (21%), Positives = 36/97 (37%), Gaps = 17/97 (17%)
Query: 221 SAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIG------- 273
A + SV L C A G+P+P I+W+ + + G
Sbjct: 20 HMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVH 79
Query: 274 ----------SSLSISHVEESDSGVWNCVANNSEGQD 300
S++SI + E D+G + C A+N ++
Sbjct: 80 IHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRN 116
Score = 43.9 bits (103), Expect = 9e-06
Identities = 21/93 (22%), Positives = 30/93 (32%), Gaps = 21/93 (22%)
Query: 21 VVVDVGHRIELHCRVS--PK----------RLSSAKAWLKDGLVLRRNSDE--------- 59
VG +ELHC P + + L DG L R
Sbjct: 31 QQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAAS 90
Query: 60 VLVLDRVQREDAGMYQCHVSADDDSAQMSAQVI 92
+ +D + ED G Y+C S D D ++
Sbjct: 91 TISIDTLVEEDTGTYECRASNDPDRNHLTRAPR 123
Score = 41.2 bits (96), Expect = 7e-05
Identities = 18/78 (23%), Positives = 25/78 (32%), Gaps = 21/78 (26%)
Query: 106 VVVDVGHRIELHCRVS--PK----------RLSSAKAWLKDGLVLRRNSDE--------- 144
VG +ELHC P + + L DG L R
Sbjct: 31 QQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAAS 90
Query: 145 VLVLDRVQREDAGMYQCH 162
+ +D + ED G Y+C
Sbjct: 91 TISIDTLVEEDTGTYECR 108
Score = 36.5 bits (84), Expect = 0.004
Identities = 10/35 (28%), Positives = 14/35 (40%)
Query: 335 SAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIK 369
A + SV L C A G+P+P I+
Sbjct: 20 HMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQ 54
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A*
1qa9_A
Length = 182
Score = 71.5 bits (175), Expect = 5e-15
Identities = 30/203 (14%), Positives = 58/203 (28%), Gaps = 34/203 (16%)
Query: 99 EIASSNQVVVDVGHRIELHCRVSPKRLSSAK-AWLKDGLVLRRNSDEVLVLDRVQREDAG 157
EI ++ + +G I L W K + ++ +
Sbjct: 2 EITNALETWGALGQDINLDIPSFQMSDDIDDIKWEKTS-----DKKKIAQFRK------- 49
Query: 158 MYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENK 217
+ E Y + +G L I + D+ Y+ + +V L +
Sbjct: 50 EKETFKEKDTYKLFKNGTLKIKHLKTDDQ-DIYKVSIYDTKGK----NVLEKIFDLKIQE 104
Query: 218 RLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLS 277
R+ K +I + L C P + Y+ ++ S R +
Sbjct: 105 RV-------SKPKI--SWTCINTTLTCEVMNGTDPELNLYQDGKHLKLSQR-------VI 148
Query: 278 ISHVEESDSGVWNCVANNSEGQD 300
S S + C A N ++
Sbjct: 149 THKWTTSLSAKFKCTAGNKVSKE 171
Score = 59.5 bits (144), Expect = 8e-11
Identities = 18/170 (10%), Positives = 44/170 (25%), Gaps = 25/170 (14%)
Query: 14 EMSPSGQVVVDVGHRIELHCRVSP------------KRLSSAKAWLKDGLVLRRNSDEV- 60
E++ + + +G I L A + + D
Sbjct: 2 EITNALETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYK 61
Query: 61 ------LVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGELVEIASSNQVVVDVGHRI 114
L + ++ +D +Y+ + + L ++ S +
Sbjct: 62 LFKNGTLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDL---KIQERVSKPKISWTCINT 118
Query: 115 ELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIE 164
L C V +DG L + ++ + + ++C
Sbjct: 119 TLTCEVMNGTDPELN-LYQDGKHL--KLSQRVITHKWTTSLSAKFKCTAG 165
Score = 56.0 bits (135), Expect = 1e-09
Identities = 19/147 (12%), Positives = 42/147 (28%), Gaps = 43/147 (29%)
Query: 238 ESVIL--PCSAQGNPLPTIKWYKQD------------SPVEESDRIQRIGS-SLSISHVE 282
+ + L P + + IKW K +E D + + +L I H++
Sbjct: 15 QDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLK 74
Query: 283 ESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEK 342
D ++ +++G++ ++ L + K
Sbjct: 75 TDDQDIYKVSIYDTKGKNVLEKIFD--------------------------LKIQERVSK 108
Query: 343 HRILNVKKDESVILPCSAQGNPLPTIK 369
+I + L C P +
Sbjct: 109 PKI--SWTCINTTLTCEVMNGTDPELN 133
>1he7_A High affinity nerve growth factor receptor; transferase,
TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP:
b.1.1.4 PDB: 1wwa_X 1www_X
Length = 126
Score = 69.6 bits (170), Expect = 8e-15
Identities = 15/82 (18%), Positives = 30/82 (36%), Gaps = 11/82 (13%)
Query: 230 RILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQR-----------IGSSLSI 278
++ + +P S G P P+++W S + E+ I L +
Sbjct: 8 QLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRL 67
Query: 279 SHVEESDSGVWNCVANNSEGQD 300
+ ++G + +A N GQ
Sbjct: 68 NQPTHVNNGNYTLLAANPFGQA 89
Score = 35.3 bits (81), Expect = 0.007
Identities = 13/65 (20%), Positives = 20/65 (30%), Gaps = 18/65 (27%)
Query: 46 WLKDGLVLRRNSDE----------------VLVLDRVQREDAGMYQCHVS--ADDDSAQM 87
WL +G VL S L L++ + G Y + SA +
Sbjct: 34 WLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASI 93
Query: 88 SAQVI 92
A +
Sbjct: 94 MAAFM 98
Score = 34.1 bits (78), Expect = 0.022
Identities = 10/47 (21%), Positives = 14/47 (29%), Gaps = 16/47 (34%)
Query: 131 WLKDGLVLRRNSDE----------------VLVLDRVQREDAGMYQC 161
WL +G VL S L L++ + G Y
Sbjct: 34 WLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTL 80
Score = 28.8 bits (64), Expect = 1.4
Identities = 5/26 (19%), Positives = 12/26 (46%)
Query: 344 RILNVKKDESVILPCSAQGNPLPTIK 369
++ + +P S G P P+++
Sbjct: 8 QLHTAVEMHHWCIPFSVDGQPAPSLR 33
>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like
protein 3, nephrin- like 2, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 68.4 bits (167), Expect = 2e-14
Identities = 22/97 (22%), Positives = 41/97 (42%), Gaps = 14/97 (14%)
Query: 225 MFEKHRILNVKKDESVILPCSAQGNPLP-TIKWYKQDSP----------VEESDRIQRIG 273
+ + + E + C + P P I W +++ VE + +
Sbjct: 16 IISSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVI 75
Query: 274 SSLSISHVEESD-SGVWNCVANNSEGQD--KMQLFIQ 307
S+L+IS++ +D ++NC A NS G D ++L Q
Sbjct: 76 STLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQ 112
Score = 46.4 bits (110), Expect = 1e-06
Identities = 17/103 (16%), Positives = 29/103 (28%), Gaps = 23/103 (22%)
Query: 100 IASSNQVVVDVGHRIELHCRVS----PKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQRED 155
I+S+ G + ++ C + P R++ W VL + R
Sbjct: 17 ISSTQTQHALHGEKGQIKCFIRSTPPPDRIA----WSWKENVLESGTS-----GRYT--- 64
Query: 156 AGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKL 198
+E L I + +D Y C N
Sbjct: 65 -------VETISTEEGVISTLTISNIVRADFQTIYNCTAWNSF 100
Score = 30.6 bits (69), Expect = 0.27
Identities = 4/28 (14%), Positives = 9/28 (32%)
Query: 339 MFEKHRILNVKKDESVILPCSAQGNPLP 366
+ + + E + C + P P
Sbjct: 16 IISSTQTQHALHGEKGQIKCFIRSTPPP 43
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND,
structural protein, muscle, antibo; 1.69A {Homo sapiens}
Length = 97
Score = 67.7 bits (166), Expect = 2e-14
Identities = 16/81 (19%), Positives = 33/81 (40%), Gaps = 7/81 (8%)
Query: 234 VKKDESVILPCSAQGNPLPT-IKWYKQDSPVEESDRIQRI----GSSLSISHVEESDSGV 288
++ V C + T + WY +E S++ + + L + + + D G
Sbjct: 13 GEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKDITKLDDGT 72
Query: 289 WNCVANNSEGQD--KMQLFIQ 307
+ C N G+D +LF++
Sbjct: 73 YRCKVVNDYGEDSSYAELFVK 93
Score = 45.8 bits (109), Expect = 9e-07
Identities = 14/81 (17%), Positives = 28/81 (34%), Gaps = 9/81 (11%)
Query: 21 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSD---------EVLVLDRVQREDA 71
V + G ++ C++ S+ W L + +L + + + D
Sbjct: 11 AVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKDITKLDD 70
Query: 72 GMYQCHVSADDDSAQMSAQVI 92
G Y+C V D A++
Sbjct: 71 GTYRCKVVNDYGEDSSYAELF 91
Score = 43.8 bits (104), Expect = 5e-06
Identities = 16/87 (18%), Positives = 31/87 (35%), Gaps = 9/87 (10%)
Query: 106 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSD---------EVLVLDRVQREDA 156
V + G ++ C++ S+ W L + +L + + + D
Sbjct: 11 AVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKDITKLDD 70
Query: 157 GMYQCHIEDGKYHMLSSGELIIHQVDE 183
G Y+C + + S EL + V E
Sbjct: 71 GTYRCKVVNDYGEDSSYAELFVKGVRE 97
>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG
superfamily, rossmann fold, metal mediated protein
interf immune system; HET: NAG; 3.30A {Homo sapiens}
SCOP: b.1.1.3 b.1.1.4
Length = 291
Score = 71.0 bits (173), Expect = 4e-14
Identities = 51/299 (17%), Positives = 85/299 (28%), Gaps = 45/299 (15%)
Query: 13 IEMSPSGQVVVDVGHRIELHCRVS---PKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQRE 69
+SPS +V++ G + + C S PK L K L+L N+ +V L VQ
Sbjct: 2 TSVSPS-KVILPRGGSVLVTCSTSCDQPKLLGIETPLPKKELLLPGNNRKVYELSNVQ-- 58
Query: 70 DAGMYQCHVSADDDSAQMSAQVILGG--ELVEIASSNQVVVDVGHRIELHCRVS----PK 123
+ C+ + D + + + E VE+A VG + L C+V
Sbjct: 59 EDSQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQ-PVGKNLTLRCQVEGGAPRA 117
Query: 124 RLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDE 183
L+ L+ L+R + V
Sbjct: 118 NLTVV--LLRGEKELKREP-------------------------AVGEPAEVTTTVLVRR 150
Query: 184 SDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILP 243
++ CR L L +L A + ++ D +
Sbjct: 151 DHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRV-LEVDTQGTVV 209
Query: 244 CSAQGN-PLPTIKWYKQDSPVEESDRIQRIGSSLS---ISHVEESDSGVWNCVANNSEG 298
CS G P+ + + + + S S V D G G
Sbjct: 210 CSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILG 268
Score = 43.7 bits (102), Expect = 5e-05
Identities = 37/274 (13%), Positives = 80/274 (29%), Gaps = 66/274 (24%)
Query: 98 VEIASSNQVVVDVGHRIELHCRVS---PKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQRE 154
+ S ++V++ G + + C S PK L K L+L N+ +V L VQ
Sbjct: 2 TSV-SPSKVILPRGGSVLVTCSTSCDQPKLLGIETPLPKKELLLPGNNRKVYELSNVQ-- 58
Query: 155 DAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLT 214
+ C+ + L ++ E R+ L
Sbjct: 59 EDSQPMCYSNCPDGQSTAKTFLTVYWTPE--------------------------RVELA 92
Query: 215 ENKRLLSAAKMFEKHRILNVKKDESVILPCSAQG-NPLP--TIKWYKQDSPVE-ESDRIQ 270
+++ L C +G P T+ + + ++ E +
Sbjct: 93 PLPSWQPV--------------GKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGE 138
Query: 271 RIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKN 330
+ ++ + ++C ++LF + + +L +
Sbjct: 139 PAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELF-------ENTSAPYQLQTFVLPATP 191
Query: 331 KRLLSAAKMFEKHRILNVKKDESVILPCSAQGNP 364
+L+S ++ D + CS G
Sbjct: 192 PQLVSPR---------VLEVDTQGTVVCSLDGLF 216
>2v9t_A Roundabout homolog 1; structural protein-receptor complex,
developmental protein, domain, roundabout, chemotaxis,
LRR domain; 1.70A {Homo sapiens}
Length = 117
Score = 66.4 bits (162), Expect = 9e-14
Identities = 27/79 (34%), Positives = 32/79 (40%), Gaps = 11/79 (13%)
Query: 234 VKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQR------IGSSLSISHVE----- 282
V K E L C A+G P PTI+WYK VE R SL +
Sbjct: 21 VSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKS 80
Query: 283 ESDSGVWNCVANNSEGQDK 301
D GV+ CVA N G+
Sbjct: 81 RPDEGVYVCVARNYLGEAV 99
Score = 37.1 bits (86), Expect = 0.002
Identities = 16/75 (21%), Positives = 26/75 (34%), Gaps = 23/75 (30%)
Query: 21 VVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRNSDEV----------------L 61
++V G L+C+ P + W K G + + D+ +
Sbjct: 19 LIVSKGEPATLNCKAEGRPTPTIE----WYKGGERVETDKDDPRSHRMLLPSGSLFFLRI 74
Query: 62 VLDRVQREDAGMYQC 76
V R R D G+Y C
Sbjct: 75 VHGRKSRPDEGVYVC 89
Score = 37.1 bits (86), Expect = 0.002
Identities = 16/75 (21%), Positives = 26/75 (34%), Gaps = 23/75 (30%)
Query: 106 VVVDVGHRIELHCRVS--PK-RLSSAKAWLKDGLVLRRNSDEV----------------L 146
++V G L+C+ P + W K G + + D+ +
Sbjct: 19 LIVSKGEPATLNCKAEGRPTPTIE----WYKGGERVETDKDDPRSHRMLLPSGSLFFLRI 74
Query: 147 VLDRVQREDAGMYQC 161
V R R D G+Y C
Sbjct: 75 VHGRKSRPDEGVYVC 89
Score = 33.2 bits (76), Expect = 0.030
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 348 VKKDESVILPCSAQGNPLPTIK 369
V K E L C A+G P PTI+
Sbjct: 21 VSKGEPATLNCKAEGRPTPTIE 42
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain,
cell adhesion, cell junction, glycoprotein,
immunoglobulin domain, membrane; HET: NAG FUC; 2.19A
{Mus musculus} PDB: 3mj7_A* 3mj9_A*
Length = 268
Score = 69.1 bits (168), Expect = 1e-13
Identities = 39/241 (16%), Positives = 70/241 (29%), Gaps = 48/241 (19%)
Query: 100 IASSNQVVVDVGHRIELHCRVSPKRLSS--AKAWLKDGLVLRRNSDEVLVLDRVQREDAG 157
SS Q+ V VG + + C V WL S+ VL G
Sbjct: 9 TVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDK-DDASEYVLFYYSNLSVPTG 67
Query: 158 MYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENK 217
+Q + G L++ V ++D Y C + + +
Sbjct: 68 RFQNRSHLVGDTFHNDGSLLLQDVQKADE-GIYTCEIRL----------KNESMVMKKPV 116
Query: 218 RLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLP---TIKWYKQDSP------------ 262
L + R L V+ ++ + CS Q + W
Sbjct: 117 ELWVLPEE---PRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDS 173
Query: 263 ----------------VEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFI 306
V+ + I R S+ + V+ESD G++ C + + + + +
Sbjct: 174 NMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVL 233
Query: 307 Q 307
Sbjct: 234 H 234
Score = 60.7 bits (146), Expect = 1e-10
Identities = 37/223 (16%), Positives = 70/223 (31%), Gaps = 40/223 (17%)
Query: 10 SLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSS--AKAWLKDG--------LVLRRNSDE 59
L S Q+ V VG + + C V WL ++ ++
Sbjct: 4 GLPGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLS 63
Query: 60 V---------------------LVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGELV 98
V L+L VQ+ D G+Y C + ++S M V L V
Sbjct: 64 VPTGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVEL---WV 120
Query: 99 EIASSNQVVVDVGHRIELHCRV--SPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQRED- 155
+ V VG ++ C + + ++ + W+ + ++
Sbjct: 121 LPEEPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKF 180
Query: 156 --AGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVN 196
G ++ ++ + G + + V ESD+ Y C
Sbjct: 181 QSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQ-GIYTCSIYV 222
Score = 57.6 bits (138), Expect = 1e-09
Identities = 22/178 (12%), Positives = 47/178 (26%), Gaps = 55/178 (30%)
Query: 218 RLLSAAKMFEKHRILNVKKDESVILPC---SAQGNPLPTIKWYKQDSPV----------- 263
R + L V ESV++ C + + + W
Sbjct: 1 RSQGLPGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYS 60
Query: 264 -------EESDRIQRIGS------SLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAH 310
+R +G SL + V+++D G++ C
Sbjct: 61 NLSVPTGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESM---------- 110
Query: 311 GKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTI 368
+ + + + E+ + L V+ ++ + CS Q +
Sbjct: 111 -----VMKKPVELWVLPEEPRD-------------LRVRVGDTTQMRCSIQSTEEKRV 150
Score = 39.1 bits (90), Expect = 0.001
Identities = 7/35 (20%), Positives = 16/35 (45%)
Query: 57 SDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQV 91
+D + L V+ D G+Y C + ++ + +
Sbjct: 199 NDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVL 233
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus}
SCOP: b.1.1.1 b.1.1.3
Length = 176
Score = 66.5 bits (162), Expect = 3e-13
Identities = 26/200 (13%), Positives = 58/200 (29%), Gaps = 36/200 (18%)
Query: 102 SSNQVVVDVGHRIELHCRVSPKRLSSAK-AWLKDGLVLRRNSDEVLVLDRVQREDAGMYQ 160
S V +GH I L+ + W + ++ + +
Sbjct: 2 DSGTVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRK--------------MK 47
Query: 161 CHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLL 220
++ G + +L++G+L I + D +Y + G L + L
Sbjct: 48 PFLKSGAFEILANGDLKIKNLTRDDS-GTYNVTVYST----------NGTRILNKALDLR 96
Query: 221 SAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISH 280
+ + + L C +K Y+ + + ++S+
Sbjct: 97 ILEMVSKPMIYWEC---SNATLTCEVLEGTDVELKLYQGKEHLRSLRQ-------KTMSY 146
Query: 281 VEESDSGVWNCVANNSEGQD 300
+ + C A N Q+
Sbjct: 147 QWTNLRAPFKCKAVNRVSQE 166
Score = 53.4 bits (128), Expect = 9e-09
Identities = 25/167 (14%), Positives = 50/167 (29%), Gaps = 29/167 (17%)
Query: 18 SGQVVVDVGHRIELHCRVSPKRLSSAK-AWLKDG---LVLRRNSDEV------------- 60
SG V +GH I L+ + W + +R
Sbjct: 3 SGTVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGD 62
Query: 61 LVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGELVEIASSNQVVVDVGHRIELHCRV 120
L + + R+D+G Y V + + + ++ + L ++E+ S + + L C V
Sbjct: 63 LKIKNLTRDDSGTYNVTVYSTNGTRILNKALDL--RILEMVSKPMIYWE-CSNATLTCEV 119
Query: 121 ---SPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIE 164
+ L + L S + ++C
Sbjct: 120 LEGTDVELK----LYQGKEHL--RSLRQKTMSYQWTNLRAPFKCKAV 160
Score = 49.2 bits (117), Expect = 3e-07
Identities = 19/156 (12%), Positives = 41/156 (26%), Gaps = 41/156 (26%)
Query: 227 EKHRILNVKKDESVILPCSAQ--GNPLPTIKWYKQDSPVEE----------SDRIQRIGS 274
+ + L + + ++W + + V E S + + +
Sbjct: 1 RDSGTVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILAN 60
Query: 275 -SLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRL 333
L I ++ DSG +N ++ G + +
Sbjct: 61 GDLKIKNLTRDDSGTYNVTVYSTNGTRILNKALD-------------------------- 94
Query: 334 LSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIK 369
L +M K I + + L C +K
Sbjct: 95 LRILEMVSKPMI--YWECSNATLTCEVLEGTDVELK 128
>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 103
Score = 63.5 bits (155), Expect = 5e-13
Identities = 15/71 (21%), Positives = 24/71 (33%), Gaps = 5/71 (7%)
Query: 232 LNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI----GSSLSISHVEESDSG 287
V E V L C P + W K + +S + + + L I D+G
Sbjct: 18 QWVAPGEDVELRCELSRAGTP-VHWLKDRKAIRKSQKYDVVCEGTMAMLVIRGASLKDAG 76
Query: 288 VWNCVANNSEG 298
+ C S+
Sbjct: 77 EYTCEVEASKS 87
Score = 49.2 bits (118), Expect = 7e-08
Identities = 21/82 (25%), Positives = 33/82 (40%), Gaps = 15/82 (18%)
Query: 21 VVVDVGHRIELHCRVS--PKRLSSAKAWLKDGLVLRRNSD---------EVLVLDRVQRE 69
V G +EL C +S + WLKD +R++ +LV+ +
Sbjct: 18 QWVAPGEDVELRCELSRAGTPVH----WLKDRKAIRKSQKYDVVCEGTMAMLVIRGASLK 73
Query: 70 DAGMYQCHVSADDDSAQMSAQV 91
DAG Y C V A +A + +
Sbjct: 74 DAGEYTCEVEASKSTASLHVEE 95
Score = 48.1 bits (115), Expect = 2e-07
Identities = 22/84 (26%), Positives = 34/84 (40%), Gaps = 19/84 (22%)
Query: 106 VVVDVGHRIELHCRVS--PKRLSSAKAWLKDGLVLRRNSD---------EVLVLDRVQRE 154
V G +EL C +S + WLKD +R++ +LV+ +
Sbjct: 18 QWVAPGEDVELRCELSRAGTPVH----WLKDRKAIRKSQKYDVVCEGTMAMLVIRGASLK 73
Query: 155 DAGMYQCHIEDGKYHMLSSGELII 178
DAG Y C +E K S+ L +
Sbjct: 74 DAGEYTCEVEASK----STASLHV 93
>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498;
beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 102
Score = 62.4 bits (152), Expect = 2e-12
Identities = 11/71 (15%), Positives = 26/71 (36%), Gaps = 5/71 (7%)
Query: 232 LNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI----GSSLSISHVEESDSG 287
+ + S L C + WYK + S +++ L + ++++G
Sbjct: 21 VQAEAGASATLSCEV-AQAQTEVTWYKDGKKLSSSSKVRVEAVGCTRRLVVQQAGQAEAG 79
Query: 288 VWNCVANNSEG 298
++C A +
Sbjct: 80 EYSCEAGGQQL 90
Score = 45.9 bits (109), Expect = 9e-07
Identities = 21/88 (23%), Positives = 34/88 (38%), Gaps = 21/88 (23%)
Query: 21 VVVDVGHRIELHCRVSPKRLSSAKA---WLKDGLVLRRNSD---------EVLVLDRVQR 68
V + G L C V+ A+ W KDG L +S LV+ + +
Sbjct: 21 VQAEAGASATLSCEVA-----QAQTEVTWYKDGKKLSSSSKVRVEAVGCTRRLVVQQAGQ 75
Query: 69 EDAGMYQCHVSADDDSAQMSAQVILGGE 96
+AG Y C Q+S ++ + G+
Sbjct: 76 AEAGEYSCEA----GGQQLSFRLQVAGQ 99
Score = 45.5 bits (108), Expect = 1e-06
Identities = 20/85 (23%), Positives = 30/85 (35%), Gaps = 21/85 (24%)
Query: 106 VVVDVGHRIELHCRVSPKRLSSAKA---WLKDGLVLRRNSD---------EVLVLDRVQR 153
V + G L C V+ A+ W KDG L +S LV+ + +
Sbjct: 21 VQAEAGASATLSCEVA-----QAQTEVTWYKDGKKLSSSSKVRVEAVGCTRRLVVQQAGQ 75
Query: 154 EDAGMYQCHIEDGKYHMLSSGELII 178
+AG Y C + S L +
Sbjct: 76 AEAGEYSCEAGGQQ----LSFRLQV 96
>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 62.4 bits (152), Expect = 2e-12
Identities = 15/81 (18%), Positives = 23/81 (28%), Gaps = 7/81 (8%)
Query: 232 LNVKKDESVILPCS-AQGNPLPTIKWYKQDSPVEESDRIQRIG----SSLSISHVEESDS 286
+ V + ES C + + W V S R Q L + SD+
Sbjct: 18 MEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRKYILVVREAAPSDA 77
Query: 287 GVWNCVANNSEGQDKMQLFIQ 307
G K L ++
Sbjct: 78 GEVVFSVRGLTS--KASLIVR 96
Score = 49.3 bits (118), Expect = 6e-08
Identities = 16/83 (19%), Positives = 25/83 (30%), Gaps = 13/83 (15%)
Query: 106 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSD---------EVLVLDRVQREDA 156
+ V G C +S + S W G + +S +LV+ DA
Sbjct: 18 MEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRKYILVVREAAPSDA 77
Query: 157 GMYQCHIEDGKYHMLSSGELIIH 179
G + S LI+
Sbjct: 78 GEVVFSVRGLT----SKASLIVR 96
Score = 48.2 bits (115), Expect = 1e-07
Identities = 15/75 (20%), Positives = 22/75 (29%), Gaps = 9/75 (12%)
Query: 21 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSD---------EVLVLDRVQREDA 71
+ V G C +S + S W G + +S +LV+ DA
Sbjct: 18 MEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRKYILVVREAAPSDA 77
Query: 72 GMYQCHVSADDDSAQ 86
G V A
Sbjct: 78 GEVVFSVRGLTSKAS 92
>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 106
Score = 61.6 bits (150), Expect = 3e-12
Identities = 20/72 (27%), Positives = 23/72 (31%), Gaps = 5/72 (6%)
Query: 232 LNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIG----SSLSISHVEESDSG 287
L VK E + C T KWYK V S RI L I V D G
Sbjct: 18 LTVKAAEQAVFKCEVSDEK-VTGKWYKNGVEVRPSKRITISHVGRFHKLVIDDVRPEDEG 76
Query: 288 VWNCVANNSEGQ 299
+ V +
Sbjct: 77 DYTFVPDGYALS 88
Score = 47.8 bits (114), Expect = 2e-07
Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 15/81 (18%)
Query: 21 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEV----------LVLDRVQRED 70
+ V + C VS ++++ W K+G+ +R S + LV+D V+ ED
Sbjct: 18 LTVKAAEQAVFKCEVSDEKVTGK--WYKNGVEVR-PSKRITISHVGRFHKLVIDDVRPED 74
Query: 71 AGMYQCHVSADDDSAQMSAQV 91
G Y D + +SA++
Sbjct: 75 EGDYTF--VPDGYALSLSAKL 93
Score = 44.7 bits (106), Expect = 3e-06
Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 13/72 (18%)
Query: 106 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEV----------LVLDRVQRED 155
+ V + C VS ++++ W K+G+ +R S + LV+D V+ ED
Sbjct: 18 LTVKAAEQAVFKCEVSDEKVTGK--WYKNGVEVR-PSKRITISHVGRFHKLVIDDVRPED 74
Query: 156 AGMYQCHIEDGK 167
G Y +
Sbjct: 75 EGDYTFVPDGYA 86
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain,
SLOW-type myosin-binding protein C, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 100
Score = 61.2 bits (149), Expect = 3e-12
Identities = 17/80 (21%), Positives = 30/80 (37%), Gaps = 6/80 (7%)
Query: 232 LNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI----GSSLSISHVEESDSG 287
V + + L C N KW K PV+ESDR++ + L I++ D G
Sbjct: 17 QTVNLGKEICLKCEISENI--PGKWTKNGLPVQESDRLKVVQKGRIHKLVIANALTEDEG 74
Query: 288 VWNCVANNSEGQDKMQLFIQ 307
+ + ++ +
Sbjct: 75 DYVFAPDAYNVTLPAKVHVI 94
Score = 51.2 bits (123), Expect = 1e-08
Identities = 20/82 (24%), Positives = 32/82 (39%), Gaps = 14/82 (17%)
Query: 21 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSD---------EVLVLDRVQREDA 71
V++G I L C +S K W K+GL ++ + LV+ ED
Sbjct: 17 QTVNLGKEICLKCEISEN--IPGK-WTKNGLPVQESDRLKVVQKGRIHKLVIANALTEDE 73
Query: 72 GMYQCHVSADDDSAQMSAQVIL 93
G Y A + + A+V +
Sbjct: 74 GDYVFAPDAYNVTL--PAKVHV 93
Score = 48.1 bits (115), Expect = 2e-07
Identities = 17/71 (23%), Positives = 26/71 (36%), Gaps = 12/71 (16%)
Query: 106 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSD---------EVLVLDRVQREDA 156
V++G I L C +S K W K+GL ++ + LV+ ED
Sbjct: 17 QTVNLGKEICLKCEISEN--IPGK-WTKNGLPVQESDRLKVVQKGRIHKLVIANALTEDE 73
Query: 157 GMYQCHIEDGK 167
G Y +
Sbjct: 74 GDYVFAPDAYN 84
>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 115
Score = 61.3 bits (149), Expect = 5e-12
Identities = 11/71 (15%), Positives = 27/71 (38%), Gaps = 5/71 (7%)
Query: 232 LNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQ---RIGS--SLSISHVEESDS 286
++V++ S C + W+ +P+ ++ + + G L++ + DS
Sbjct: 23 VDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQPGGYHVLTLRQLALKDS 82
Query: 287 GVWNCVANNSE 297
G A +
Sbjct: 83 GTIYFEAGDQR 93
Score = 46.6 bits (111), Expect = 8e-07
Identities = 19/84 (22%), Positives = 27/84 (32%), Gaps = 15/84 (17%)
Query: 106 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSD----------EVLVLDRVQRED 155
V V G CR+SP W D L N VL L ++ +D
Sbjct: 23 VDVQEGSSATFRCRISPANYEPVH-WFLDKTPLHANELNEIDAQPGGYHVLTLRQLALKD 81
Query: 156 AGMYQCHIEDGKYHMLSSGELIIH 179
+G D + +S L +
Sbjct: 82 SGTIYFEAGDQR----ASAALRVT 101
Score = 46.2 bits (110), Expect = 8e-07
Identities = 18/76 (23%), Positives = 23/76 (30%), Gaps = 11/76 (14%)
Query: 21 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSD----------EVLVLDRVQRED 70
V V G CR+SP W D L N VL L ++ +D
Sbjct: 23 VDVQEGSSATFRCRISPANYEPVH-WFLDKTPLHANELNEIDAQPGGYHVLTLRQLALKD 81
Query: 71 AGMYQCHVSADDDSAQ 86
+G SA
Sbjct: 82 SGTIYFEAGDQRASAA 97
>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 113
Score = 60.9 bits (148), Expect = 7e-12
Identities = 16/80 (20%), Positives = 29/80 (36%), Gaps = 7/80 (8%)
Query: 232 LNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIG----SSLSISHVEESDSG 287
+ + E V+L C P ++W K V ES + L + V+ DSG
Sbjct: 23 VAAVRLERVVLTCEL-CRPWAEVRWTKDGEEVVESPALLLQKEDTVRRLVLPAVQLEDSG 81
Query: 288 VWNCVANNSEGQDKMQLFIQ 307
+ C ++ + +
Sbjct: 82 EYLCEIDDESA--SFTVTVT 99
Score = 47.1 bits (112), Expect = 4e-07
Identities = 25/97 (25%), Positives = 32/97 (32%), Gaps = 21/97 (21%)
Query: 21 VVVDVGHRIELHCRVSPKRLSSAKA---WLKDGLVLRRNSD---------EVLVLDRVQR 68
V R+ L C + A W KDG + + LVL VQ
Sbjct: 23 VAAVRLERVVLTCELC-----RPWAEVRWTKDGEEVVESPALLLQKEDTVRRLVLPAVQL 77
Query: 69 EDAGMYQCHVSADDDSAQMSAQVILGGELVEIASSNQ 105
ED+G Y C + D S V + V I S
Sbjct: 78 EDSGEYLCEI----DDESASFTVTVTEPPVRIIYSGP 110
Score = 45.1 bits (107), Expect = 2e-06
Identities = 22/86 (25%), Positives = 31/86 (36%), Gaps = 21/86 (24%)
Query: 106 VVVDVGHRIELHCRVSPKRLSSAKA---WLKDGLVLRRNSD---------EVLVLDRVQR 153
V R+ L C + A W KDG + + LVL VQ
Sbjct: 23 VAAVRLERVVLTCELC-----RPWAEVRWTKDGEEVVESPALLLQKEDTVRRLVLPAVQL 77
Query: 154 EDAGMYQCHIEDGKYHMLSSGELIIH 179
ED+G Y C I+D +S + +
Sbjct: 78 EDSGEYLCEIDDES----ASFTVTVT 99
>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding
protein C, immunoglobulin domain, structural genomics,
NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A
Length = 100
Score = 59.7 bits (145), Expect = 1e-11
Identities = 16/83 (19%), Positives = 28/83 (33%), Gaps = 7/83 (8%)
Query: 221 SAAKMFEKH--RILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI----GS 274
S+ F K V K V +P +KWYK + S +
Sbjct: 5 SSGAAFAKILDPAYQVDKGGRVRFVVEL-ADPKLEVKWYKNGQEIRPSTKYIFEHKGCQR 63
Query: 275 SLSISHVEESDSGVWNCVANNSE 297
L I++ + +D + A + +
Sbjct: 64 ILFINNCQMTDDSEYYVTAGDEK 86
Score = 46.2 bits (110), Expect = 7e-07
Identities = 14/79 (17%), Positives = 26/79 (32%), Gaps = 17/79 (21%)
Query: 20 QVVVDVGHRIELHCRVSPKRLSSAKA---WLKDGLVLRRNSD---------EVLVLDRVQ 67
VD G R+ ++ K W K+G +R ++ +L ++ Q
Sbjct: 17 AYQVDKGGRVRFVVELA-----DPKLEVKWYKNGQEIRPSTKYIFEHKGCQRILFINNCQ 71
Query: 68 REDAGMYQCHVSADDDSAQ 86
D Y + S +
Sbjct: 72 MTDDSEYYVTAGDEKCSTE 90
Score = 45.8 bits (109), Expect = 8e-07
Identities = 18/87 (20%), Positives = 29/87 (33%), Gaps = 21/87 (24%)
Query: 104 NQVVVDVGHRIELHCRVSPKRLSSAKA---WLKDGLVLRRNSD---------EVLVLDRV 151
VD G R+ ++ K W K+G +R ++ +L ++
Sbjct: 16 PAYQVDKGGRVRFVVELA-----DPKLEVKWYKNGQEIRPSTKYIFEHKGCQRILFINNC 70
Query: 152 QREDAGMYQCHIEDGKYHMLSSGELII 178
Q D Y D K S EL +
Sbjct: 71 QMTDDSEYYVTAGDEK----CSTELFV 93
>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac
muscle, hypertrophic cardiomyopathy, actin-binding, cell
adhesion, disease mutation; NMR {Homo sapiens}
Length = 95
Score = 59.7 bits (145), Expect = 1e-11
Identities = 13/79 (16%), Positives = 30/79 (37%), Gaps = 6/79 (7%)
Query: 225 MFEKH-RILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQ----RIGSSLSIS 279
F K R + V + + ++W + S + S++ +L++
Sbjct: 10 AFSKKPRSVEVAAGSPAVFEAETER-AGVKVRWQRGGSDISASNKYGLATEGTRHTLTVR 68
Query: 280 HVEESDSGVWNCVANNSEG 298
V +D G + +A +S+
Sbjct: 69 EVGPADQGSYAVIAGSSKV 87
Score = 44.6 bits (106), Expect = 2e-06
Identities = 14/82 (17%), Positives = 21/82 (25%), Gaps = 15/82 (18%)
Query: 21 VVVDVGHRIELHCRVSPKRLSSAK-AWLKDGLVLRRNSD---------EVLVLDRVQRED 70
V V G K W + G + ++ L + V D
Sbjct: 18 VEVAAGSPAVFEAETERA---GVKVRWQRGGSDISASNKYGLATEGTRHTLTVREVGPAD 74
Query: 71 AGMYQCHVSADDDSAQMSAQVI 92
G Y A + +VI
Sbjct: 75 QGSYAV--IAGSSKVKFDLKVI 94
Score = 43.1 bits (102), Expect = 8e-06
Identities = 13/83 (15%), Positives = 20/83 (24%), Gaps = 17/83 (20%)
Query: 106 VVVDVGHRIELHCRVSPKRLSSAK-AWLKDGLVLRRNSD---------EVLVLDRVQRED 155
V V G K W + G + ++ L + V D
Sbjct: 18 VEVAAGSPAVFEAETERA---GVKVRWQRGGSDISASNKYGLATEGTRHTLTVREVGPAD 74
Query: 156 AGMYQCHIEDGKYHMLSSGELII 178
G Y K +L +
Sbjct: 75 QGSYAVIAGSSK----VKFDLKV 93
>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3;
structural genomics, joint center for struct genomics,
JCSG; HET: MLY MSE; 1.70A {Mus musculus}
Length = 112
Score = 60.1 bits (145), Expect = 1e-11
Identities = 14/87 (16%), Positives = 29/87 (33%), Gaps = 14/87 (16%)
Query: 233 NVKKDESVILPCSAQGNPLP--TIKWYKQDSPVEESD------------RIQRIGSSLSI 278
+ V CSA + T W + +++++ + + L +
Sbjct: 21 SAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGELMEYTTILRL 80
Query: 279 SHVEESDSGVWNCVANNSEGQDKMQLF 305
+VE + G + CV +N G
Sbjct: 81 RNVEFTSEGXYQCVISNHFGSSYSVXA 107
Score = 41.2 bits (96), Expect = 6e-05
Identities = 20/101 (19%), Positives = 30/101 (29%), Gaps = 22/101 (21%)
Query: 12 SIEMSPSGQVVVDVGHRIELHCRVS--PKRLSSAKAWLKDGLVLRRNSDE---------- 59
I + P Q + G + C + + W D L+ E
Sbjct: 12 QITVQPETQSAIX-GSDVSFTCSAASSSDSPMTFA-WXXDNEALQDAEMENYAHLRAQGG 69
Query: 60 -------VLVLDRVQREDAGMYQCHVSADDDSAQMSAQVIL 93
+L L V+ G YQC +S S+ S L
Sbjct: 70 ELMEYTTILRLRNVEFTSEGXYQCVISNHFGSS-YSVXAXL 109
Score = 37.7 bits (87), Expect = 9e-04
Identities = 14/80 (17%), Positives = 21/80 (26%), Gaps = 20/80 (25%)
Query: 106 VVVDVGHRIELHCRVS--PKRLSSAKAWLKDGLVLRRNSDE-----------------VL 146
G + C + + W D L+ E +L
Sbjct: 20 QSAIXGSDVSFTCSAASSSDSPMTFA-WXXDNEALQDAEMENYAHLRAQGGELMEYTTIL 78
Query: 147 VLDRVQREDAGMYQCHIEDG 166
L V+ G YQC I +
Sbjct: 79 RLRNVEFTSEGXYQCVISNH 98
Score = 29.3 bits (65), Expect = 0.67
Identities = 4/25 (16%), Positives = 8/25 (32%)
Query: 347 NVKKDESVILPCSAQGNPLPTIKYR 371
+ V CSA + + +
Sbjct: 21 SAIXGSDVSFTCSAASSSDSPMTFA 45
>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF
receptor, cancer, immune system-transfer complex; HET:
NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X
Length = 122
Score = 60.1 bits (145), Expect = 2e-11
Identities = 17/90 (18%), Positives = 37/90 (41%), Gaps = 14/90 (15%)
Query: 232 LNVKKDESVILPCSAQGNPLPTIKWY--------------KQDSPVEESDRIQRIGSSLS 277
+ + E ++L C+A+ I + +D + +++ S+L+
Sbjct: 18 IELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLT 77
Query: 278 ISHVEESDSGVWNCVANNSEGQDKMQLFIQ 307
I V SD G++ C A++ K F++
Sbjct: 78 IDGVTRSDQGLYTCAASSGLMTKKNSTFVR 107
Score = 52.4 bits (125), Expect = 8e-09
Identities = 19/100 (19%), Positives = 33/100 (33%), Gaps = 18/100 (18%)
Query: 11 LSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAK-AWLKDGLVLRRNS------------ 57
+ +SPS + + VG ++ L+C + W +
Sbjct: 8 YDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGS 67
Query: 58 -----DEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVI 92
L +D V R D G+Y C S+ + + S V
Sbjct: 68 EMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVR 107
Score = 45.9 bits (108), Expect = 2e-06
Identities = 18/100 (18%), Positives = 33/100 (33%), Gaps = 18/100 (18%)
Query: 98 VEIASSNQVVVDVGHRIELHCRVSPKRLSSAK-AWLKDGLVLRRNS-------------- 142
V ++ S+ + + VG ++ L+C + W +
Sbjct: 10 VVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEM 69
Query: 143 ---DEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIH 179
L +D V R D G+Y C G +S + +H
Sbjct: 70 KKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVH 109
Score = 27.8 bits (61), Expect = 3.1
Identities = 5/26 (19%), Positives = 12/26 (46%)
Query: 346 LNVKKDESVILPCSAQGNPLPTIKYR 371
+ + E ++L C+A+ I +
Sbjct: 18 IELSVGEKLVLNCTARTELNVGIDFN 43
>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2edl_A
2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A
Length = 108
Score = 59.3 bits (144), Expect = 2e-11
Identities = 10/71 (14%), Positives = 24/71 (33%), Gaps = 6/71 (8%)
Query: 232 LNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGS----SLSISHVEESDSG 287
+ + L C + + ++W K + + R L I + +D+G
Sbjct: 18 KEASEGATATLQCEL--SKVAPVEWKKGPETLRDGGRYSLKQDGTRCELQIHDLSVADAG 75
Query: 288 VWNCVANNSEG 298
++C+
Sbjct: 76 EYSCMCGQERT 86
Score = 50.1 bits (120), Expect = 4e-08
Identities = 17/76 (22%), Positives = 21/76 (27%), Gaps = 14/76 (18%)
Query: 21 VVVDVGHRIELHCRVSPKRLSSAK-AWLKDGLVLRRNSD---------EVLVLDRVQRED 70
G L C +S A W K LR L + + D
Sbjct: 18 KEASEGATATLQCELSKV----APVEWKKGPETLRDGGRYSLKQDGTRCELQIHDLSVAD 73
Query: 71 AGMYQCHVSADDDSAQ 86
AG Y C + SA
Sbjct: 74 AGEYSCMCGQERTSAT 89
Score = 49.3 bits (118), Expect = 7e-08
Identities = 17/84 (20%), Positives = 23/84 (27%), Gaps = 18/84 (21%)
Query: 106 VVVDVGHRIELHCRVSPKRLSSAK-AWLKDGLVLRRNSD---------EVLVLDRVQRED 155
G L C +S A W K LR L + + D
Sbjct: 18 KEASEGATATLQCELSKV----APVEWKKGPETLRDGGRYSLKQDGTRCELQIHDLSVAD 73
Query: 156 AGMYQCHIEDGKYHMLSSGELIIH 179
AG Y C + +S L +
Sbjct: 74 AGEYSCMCGQER----TSATLTVR 93
>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 103
Score = 58.9 bits (143), Expect = 2e-11
Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 8/92 (8%)
Query: 221 SAAKMFEKH-RILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI----GSS 275
S A F + L V++ + + C +P T+ W K + S + Q
Sbjct: 6 SGANCFTEELTNLQVEEKGTAVFTCKT-EHPAATVTWRKGLLELRASGKHQPSQEGLTLR 64
Query: 276 LSISHVEESDSGVWNCVANNSEGQDKMQLFIQ 307
L+IS +E++DS + C ++ + QL +Q
Sbjct: 65 LTISALEKADSDTYTCDIGQAQS--RAQLLVQ 94
Score = 44.2 bits (105), Expect = 4e-06
Identities = 15/86 (17%), Positives = 28/86 (32%), Gaps = 21/86 (24%)
Query: 106 VVVDVGHRIELHCRVSPKRLSSAKA---WLKDGLVLRRNSD---------EVLVLDRVQR 153
+ V+ C+ A W K L LR + L + +++
Sbjct: 18 LQVEEKGTAVFTCKTE-----HPAATVTWRKGLLELRASGKHQPSQEGLTLRLTISALEK 72
Query: 154 EDAGMYQCHIEDGKYHMLSSGELIIH 179
D+ Y C I + S +L++
Sbjct: 73 ADSDTYTCDIGQAQ----SRAQLLVQ 94
Score = 44.2 bits (105), Expect = 4e-06
Identities = 18/94 (19%), Positives = 32/94 (34%), Gaps = 21/94 (22%)
Query: 21 VVVDVGHRIELHCRVSPKRLSSAKA---WLKDGLVLRRNSD---------EVLVLDRVQR 68
+ V+ C+ A W K L LR + L + +++
Sbjct: 18 LQVEEKGTAVFTCKTE-----HPAATVTWRKGLLELRASGKHQPSQEGLTLRLTISALEK 72
Query: 69 EDAGMYQCHVSADDDSAQMSAQVILGGELVEIAS 102
D+ Y C + AQ AQ+++ G +S
Sbjct: 73 ADSDTYTCDIG----QAQSRAQLLVQGRRSGPSS 102
>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} PDB: 2yz8_A
Length = 103
Score = 58.9 bits (143), Expect = 3e-11
Identities = 13/70 (18%), Positives = 26/70 (37%), Gaps = 5/70 (7%)
Query: 232 LNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI----GSSLSISHVEESDSG 287
L V + + L C P +KW ++ + D+ L + ++ DSG
Sbjct: 18 LEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQEGAMLELVVRNLRPQDSG 76
Query: 288 VWNCVANNSE 297
++C +
Sbjct: 77 RYSCSFGDQT 86
Score = 45.4 bits (108), Expect = 1e-06
Identities = 18/85 (21%), Positives = 28/85 (32%), Gaps = 19/85 (22%)
Query: 106 VVVDVGHRIELHCRVS--PKRLSSAKAWLKDGLVLRRNSD---------EVLVLDRVQRE 154
+ V G L C +S + W VLR LV+ ++ +
Sbjct: 18 LEVLEGGAATLRCVLSSVAAPVK----WCYGNNVLRPGDKYSLRQEGAMLELVVRNLRPQ 73
Query: 155 DAGMYQCHIEDGKYHMLSSGELIIH 179
D+G Y C D +S L +
Sbjct: 74 DSGRYSCSFGDQT----TSATLTVT 94
Score = 45.4 bits (108), Expect = 2e-06
Identities = 19/83 (22%), Positives = 29/83 (34%), Gaps = 19/83 (22%)
Query: 21 VVVDVGHRIELHCRVS--PKRLSSAKAWLKDGLVLRRNSD---------EVLVLDRVQRE 69
+ V G L C +S + W VLR LV+ ++ +
Sbjct: 18 LEVLEGGAATLRCVLSSVAAPVK----WCYGNNVLRPGDKYSLRQEGAMLELVVRNLRPQ 73
Query: 70 DAGMYQCHVSADDDSAQMSAQVI 92
D+G Y C S D + SA +
Sbjct: 74 DSGRYSC--SFGDQTT--SATLT 92
>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2;
IG domain, structural protein; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 104
Score = 58.2 bits (141), Expect = 5e-11
Identities = 14/70 (20%), Positives = 24/70 (34%), Gaps = 6/70 (8%)
Query: 234 VKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGS-----SLSISHVEESDSGV 288
V K + L + +KW K ++ S S +L+IS +D
Sbjct: 28 VSKGHKIRLTVEL-ADHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAA 86
Query: 289 WNCVANNSEG 298
+ CV +
Sbjct: 87 YQCVVGGEKC 96
Score = 47.4 bits (113), Expect = 3e-07
Identities = 19/95 (20%), Positives = 34/95 (35%), Gaps = 18/95 (18%)
Query: 5 IQVKSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKA---WLKDGLVLRRNSDEV- 60
+ K S + + V GH+I L ++ A WLK+G ++ + +
Sbjct: 10 MDEKKSTAFQKKLEPAYQVSKGHKIRLTVELA-----DHDAEVKWLKNGQEIQMSGSKYI 64
Query: 61 ---------LVLDRVQREDAGMYQCHVSADDDSAQ 86
L + + D YQC V + S +
Sbjct: 65 FESIGAKRTLTISQCSLADDAAYQCVVGGEKCSTE 99
Score = 45.4 bits (108), Expect = 1e-06
Identities = 19/88 (21%), Positives = 31/88 (35%), Gaps = 22/88 (25%)
Query: 104 NQVVVDVGHRIELHCRVSPKRLSSAKA---WLKDGLVLRRNSDEV----------LVLDR 150
V GH+I L ++ A WLK+G ++ + + L + +
Sbjct: 24 PAYQVSKGHKIRLTVELA-----DHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQ 78
Query: 151 VQREDAGMYQCHIEDGKYHMLSSGELII 178
D YQC + K S EL +
Sbjct: 79 CSLADDAAYQCVVGGEK----CSTELFV 102
>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 104
Score = 57.8 bits (140), Expect = 6e-11
Identities = 16/69 (23%), Positives = 22/69 (31%), Gaps = 5/69 (7%)
Query: 234 VKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIG----SSLSISHVEESDSGVW 289
E V+L C WYK VEES+ + L + + DSG +
Sbjct: 22 FTTSERVVLTCEL-SRVDFPATWYKDGQKVEESELLVVKMDGRKHRLILPEAKVQDSGEF 80
Query: 290 NCVANNSEG 298
C
Sbjct: 81 ECRTEGVSA 89
Score = 48.9 bits (117), Expect = 9e-08
Identities = 14/83 (16%), Positives = 27/83 (32%), Gaps = 17/83 (20%)
Query: 21 VVVDVGHRIELHCRVSPKRLSSAKA---WLKDGLVLRRNSD---------EVLVLDRVQR 68
+ R+ L C +S W KDG + + L+L +
Sbjct: 20 LTFTTSERVVLTCELS-----RVDFPATWYKDGQKVEESELLVVKMDGRKHRLILPEAKV 74
Query: 69 EDAGMYQCHVSADDDSAQMSAQV 91
+D+G ++C ++ Q
Sbjct: 75 QDSGEFECRTEGVSAFFGVTVQD 97
Score = 46.6 bits (111), Expect = 6e-07
Identities = 14/86 (16%), Positives = 28/86 (32%), Gaps = 21/86 (24%)
Query: 106 VVVDVGHRIELHCRVSPKRLSSAKA---WLKDGLVLRRNSD---------EVLVLDRVQR 153
+ R+ L C +S W KDG + + L+L +
Sbjct: 20 LTFTTSERVVLTCELS-----RVDFPATWYKDGQKVEESELLVVKMDGRKHRLILPEAKV 74
Query: 154 EDAGMYQCHIEDGKYHMLSSGELIIH 179
+D+G ++C E + + +
Sbjct: 75 QDSGEFECRTEGVS----AFFGVTVQ 96
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 62.4 bits (152), Expect = 7e-11
Identities = 23/113 (20%), Positives = 40/113 (35%), Gaps = 6/113 (5%)
Query: 192 CRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPL 251
C + G L A K + + V + +V C A G+P
Sbjct: 357 CATPEFVQGKEFKDFPDVLL--PNYFTCRRARIRDRKAQQVFVDEGHTVQFVCRADGDPP 414
Query: 252 PTIKWYKQDSPVEESDRIQRI----GSSLSISHVEESDSGVWNCVANNSEGQD 300
P I W + + R+ +L + + + D+G + C+A N+ G D
Sbjct: 415 PAILWLSPRKHLVSAKSNGRLTVFPDGTLEVRYAQVQDNGTYLCIAANAGGND 467
Score = 42.0 bits (99), Expect = 2e-04
Identities = 18/76 (23%), Positives = 28/76 (36%), Gaps = 10/76 (13%)
Query: 13 IEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKD-GLVLRRNSDE--------VLVL 63
I + QV VD GH ++ CR + WL ++ S+ L +
Sbjct: 387 IRDRKAQQVFVDEGHTVQFVCRADGDPPPAIL-WLSPRKHLVSAKSNGRLTVFPDGTLEV 445
Query: 64 DRVQREDAGMYQCHVS 79
Q +D G Y C +
Sbjct: 446 RYAQVQDNGTYLCIAA 461
Score = 38.2 bits (89), Expect = 0.004
Identities = 17/69 (24%), Positives = 26/69 (37%), Gaps = 10/69 (14%)
Query: 102 SSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKD-GLVLRRNSDE--------VLVLDRVQ 152
+ QV VD GH ++ CR + WL ++ S+ L + Q
Sbjct: 391 KAQQVFVDEGHTVQFVCRADGDPPPAIL-WLSPRKHLVSAKSNGRLTVFPDGTLEVRYAQ 449
Query: 153 REDAGMYQC 161
+D G Y C
Sbjct: 450 VQDNGTYLC 458
Score = 27.8 bits (62), Expect = 6.2
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 346 LNVKKDESVILPCSAQGNPLPTIK 369
+ V + +V C A G+P P I
Sbjct: 395 VFVDEGHTVQFVCRADGDPPPAIL 418
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 126
Score = 58.5 bits (141), Expect = 7e-11
Identities = 19/97 (19%), Positives = 34/97 (35%), Gaps = 17/97 (17%)
Query: 221 SAAKMF-EKHRILNVKKDESVILPCSAQGNPL---PTIKWYKQDSPVEESDRIQRI---- 272
S+ +F EK + VK E + + L PTIKW+K S + +
Sbjct: 5 SSGILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKE 64
Query: 273 ---------GSSLSISHVEESDSGVWNCVANNSEGQD 300
+ I +++ +G + C + D
Sbjct: 65 TFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFD 101
Score = 37.7 bits (87), Expect = 0.001
Identities = 17/113 (15%), Positives = 30/113 (26%), Gaps = 25/113 (22%)
Query: 21 VVVDVGHRIELHCRVS--PKRLSSAKAWLKDGLVLRRNSDE------------------V 60
V VG I +V W K + +
Sbjct: 17 GTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFE 76
Query: 61 LVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGELVEIASSNQVVVDVGHR 113
+ + + + AG Y+C V+ D S + V ++ +D G
Sbjct: 77 MQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLE-----VHESTGTTPNIDSGPS 124
Score = 34.6 bits (79), Expect = 0.015
Identities = 15/102 (14%), Positives = 28/102 (27%), Gaps = 24/102 (23%)
Query: 106 VVVDVGHRIELHCRVS--PKRLSSAKAWLKDGLVLRRNSDE------------------V 145
V VG I +V W K + +
Sbjct: 17 GTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFE 76
Query: 146 LVLDRVQREDAGMYQCHIE--DGKYHMLSSGELIIHQVDESD 185
+ + + + AG Y+C + D S +L +H+ +
Sbjct: 77 MQIIKAKDNFAGNYRCEVTYKDKFDS--CSFDLEVHESTGTT 116
Score = 27.3 bits (60), Expect = 4.1
Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 4/39 (10%)
Query: 335 SAAKMF-EKHRILNVKKDESVILPCSAQGNPL---PTIK 369
S+ +F EK + VK E + + L PTIK
Sbjct: 5 SSGILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIK 43
>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet,
C2-SET immunoglobulin superfamily, H-bonded G strand
PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4
b.1.1.4 PDB: 1xmw_A
Length = 186
Score = 59.9 bits (144), Expect = 8e-11
Identities = 34/191 (17%), Positives = 60/191 (31%), Gaps = 28/191 (14%)
Query: 111 GHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQR-EDAGMYQCHIEDGKYH 169
G +EL C + W K+G L + D+ LVL ED+G Y C+
Sbjct: 14 GTSVELTCPLDSD---ENLKWEKNGQELPQKHDKHLVLQDFSEVEDSGYYVCYTPAS--- 67
Query: 170 MLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKH 229
+ Y V A + + + K+ S +
Sbjct: 68 --------------NKNTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNL 113
Query: 230 RILNVKK-DESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGV 288
++ + D SV+L C IKW K S + + + + ++ + + G
Sbjct: 114 VQVDGSRGDGSVLLTCGLTDKT---IKWLKDGSIISPLNATKN---TWNLGNNAKDPRGT 167
Query: 289 WNCVANNSEGQ 299
+ C
Sbjct: 168 YQCQGAKETSN 178
Score = 59.5 bits (143), Expect = 9e-11
Identities = 35/170 (20%), Positives = 57/170 (33%), Gaps = 35/170 (20%)
Query: 26 GHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQR-EDAGMYQC-------- 76
G +EL C + W K+G L + D+ LVL ED+G Y C
Sbjct: 14 GTSVELTCPLDSD---ENLKWEKNGQELPQKHDKHLVLQDFSEVEDSGYYVCYTPASNKN 70
Query: 77 -------HVSADDDSAQMSAQVILGGELVEIASSNQV----------VVDVGHRIELHCR 119
V + DD+ + +A+ + +Q + L C
Sbjct: 71 TYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLTCG 130
Query: 120 VSPKRLSSAKAWLKDGLVLRRNSD--EVLVLDRVQREDAGMYQCHIEDGK 167
++ K + WLKDG ++ + L ++ G YQC
Sbjct: 131 LTDKTIK----WLKDGSIISPLNATKNTWNLGNNAKDPRGTYQCQGAKET 176
Score = 52.2 bits (124), Expect = 3e-08
Identities = 23/128 (17%), Positives = 40/128 (31%), Gaps = 6/128 (4%)
Query: 238 ESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSE 297
SV L C + +KW K + + + S E DSG + C S
Sbjct: 15 TSVELTCPLDSDE--NLKWEKNGQELPQKHDKHLVLQDFS----EVEDSGYYVCYTPASN 68
Query: 298 GQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKDESVILP 357
+ L + + + + D+ K K ++ + D SV+L
Sbjct: 69 KNTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLT 128
Query: 358 CSAQGNPL 365
C +
Sbjct: 129 CGLTDKTI 136
Score = 37.9 bits (87), Expect = 0.002
Identities = 13/65 (20%), Positives = 25/65 (38%), Gaps = 6/65 (9%)
Query: 22 VVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSD--EVLVLDRVQREDAGMYQCHVS 79
+ L C ++ K + WLKDG ++ + L ++ G YQC +
Sbjct: 118 GSRGDGSVLLTCGLTDKTIK----WLKDGSIISPLNATKNTWNLGNNAKDPRGTYQCQGA 173
Query: 80 ADDDS 84
+ +
Sbjct: 174 KETSN 178
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune
system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A
4f8q_A
Length = 226
Score = 59.3 bits (143), Expect = 2e-10
Identities = 42/228 (18%), Positives = 72/228 (31%), Gaps = 41/228 (17%)
Query: 100 IASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLR--RNSDEVLVLDRVQREDAG 157
+ S ++ VG +L C + P + + + L+ +S +V ++
Sbjct: 8 LGPSGPILAMVGEDADLPCHLFPTMSA-------ETMELKWVSSSLRQVVNVYADGKEVE 60
Query: 158 MYQCHIEDGKYHMLSSGE------LIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRL 211
Q G+ +L G L IH V SD Y C G
Sbjct: 61 DRQSAPYRGRTSILRDGITAGKAALRIHNVTASDS-GKYLCY------------FQDGDF 107
Query: 212 SLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGN-PLPTIKWYK---------QDS 261
L AA + H + KD + L C + G P P I+W +
Sbjct: 108 YEKALVELKVAALGSDLHVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIPTVEAP 167
Query: 262 PVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYA 309
V + + + +S+ + S +C +S + I A
Sbjct: 168 VVADGVGLYAVAASVI---MRGSSGEGVSCTIRSSLLGLEKTASISIA 212
Score = 47.0 bits (111), Expect = 2e-06
Identities = 29/191 (15%), Positives = 50/191 (26%), Gaps = 44/191 (23%)
Query: 16 SPSGQVVVDVGHRIELHCRVSP-------------KRLSSAKAWLKDGLVLRRNSDEV-- 60
PSG ++ VG +L C + P L DG +
Sbjct: 9 GPSGPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYR 68
Query: 61 ----------------LVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGELVEIASSN 104
L + V D+G Y C+ D + ++ + ++
Sbjct: 69 GRTSILRDGITAGKAALRIHNVTASDSGKYLCYFQDGDFYEKALVELKVAALGSDLHVDV 128
Query: 105 QVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLD-----------RVQR 153
+ D G I L CR + W + + +V D ++
Sbjct: 129 KGYKDGG--IHLECRSTGWYPQPQIQWSNNKGENIPTVEAPVVADGVGLYAVAASVIMRG 186
Query: 154 EDAGMYQCHIE 164
C I
Sbjct: 187 SSGEGVSCTIR 197
Score = 38.1 bits (88), Expect = 0.002
Identities = 28/168 (16%), Positives = 44/168 (26%), Gaps = 55/168 (32%)
Query: 232 LNVKKDESVILPCSAQGNP---LPTIKWYKQDSP-----------------VEESDRIQR 271
+ E LPC +KW R
Sbjct: 14 ILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSI 73
Query: 272 IGS-------SLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIH 324
+ +L I +V SDSG + C + + +K +
Sbjct: 74 LRDGITAGKAALRIHNVTASDSGKYLCYFQDGDFYEKALV-------------------- 113
Query: 325 QVDEKNKRLLSAAKMFEKHRILNVKKDESVILPCSAQGN-PLPTIKYR 371
L AA + H + KD + L C + G P P I++
Sbjct: 114 -------ELKVAALGSDLHVDVKGYKDGGIHLECRSTGWYPQPQIQWS 154
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states,
actin-binding, cardiomyopathy, cell adhesion, disease
mutation, immunoglobulin domain; 1.30A {Homo sapiens}
PDB: 2v6h_A 2avg_A
Length = 108
Score = 56.5 bits (136), Expect = 2e-10
Identities = 15/90 (16%), Positives = 28/90 (31%), Gaps = 16/90 (17%)
Query: 227 EKHRILNVKKDESVILPCSAQGNPL---PTIKWYKQDSPVEESDRIQRI----------- 272
+ + V S+ G L P +KW+K S Q +
Sbjct: 9 MRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASK 68
Query: 273 --GSSLSISHVEESDSGVWNCVANNSEGQD 300
L I+ + + +G + C + + D
Sbjct: 69 VYLFELHITDAQPAFTGSYRCEVSTKDKFD 98
Score = 39.2 bits (91), Expect = 2e-04
Identities = 19/91 (20%), Positives = 25/91 (27%), Gaps = 20/91 (21%)
Query: 21 VVVDVGHRIELHCRV--SPKRLSSAKAWLKDG-----------LVLRRNSDEV------- 60
V VG I RV + W K L L + D
Sbjct: 14 GEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFE 73
Query: 61 LVLDRVQREDAGMYQCHVSADDDSAQMSAQV 91
L + Q G Y+C VS D + +
Sbjct: 74 LHITDAQPAFTGSYRCEVSTKDKFDCSNFNL 104
Score = 35.0 bits (80), Expect = 0.007
Identities = 20/97 (20%), Positives = 29/97 (29%), Gaps = 24/97 (24%)
Query: 106 VVVDVGHRIELHCRV--SPKRLSSAKAWLKDG-----------LVLRRNSDEV------- 145
V VG I RV + W K L L + D
Sbjct: 14 GEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFE 73
Query: 146 LVLDRVQREDAGMYQCHI--EDGKYHMLSSGELIIHQ 180
L + Q G Y+C + +D S+ L +H+
Sbjct: 74 LHITDAQPAFTGSYRCEVSTKDKFDC--SNFNLTVHE 108
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33;
2.40A {Caenorhabditis elegans} PDB: 1koa_A
Length = 573
Score = 61.0 bits (148), Expect = 2e-10
Identities = 22/116 (18%), Positives = 44/116 (37%), Gaps = 7/116 (6%)
Query: 192 CRGVNKLTGASLLSVNRGR---LSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQG 248
+ +++ S L +R + + R + + K V + +S C
Sbjct: 449 LPPLGRISNYSSLRKHRPQEYSIRDAFWDRSEAQPRFIVKPYGTEVGEGQSANFYCRVIA 508
Query: 249 NPLPTIKWYKQDSPVEESDRIQ----RIGSSLSISHVEESDSGVWNCVANNSEGQD 300
+ P + W+K D +++S + L+I+ V+ D G + A NS G
Sbjct: 509 SSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSYGTK 564
Score = 33.7 bits (77), Expect = 0.11
Identities = 16/79 (20%), Positives = 26/79 (32%), Gaps = 10/79 (12%)
Query: 23 VDVGHRIELHCRVSPKRLSSAKAWLKDGLVLR-------RNSDEV--LVLDRVQREDAGM 73
V G +CRV W KD L+ R + L ++RV+ +D G
Sbjct: 494 VGEGQSANFYCRVIASS-PPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGE 552
Query: 74 YQCHVSADDDSAQMSAQVI 92
Y + + +
Sbjct: 553 YTVRAKNSYGTKEEIVFLN 571
Score = 30.6 bits (69), Expect = 1.0
Identities = 17/80 (21%), Positives = 27/80 (33%), Gaps = 10/80 (12%)
Query: 108 VDVGHRIELHCRVSPKRLSSAKAWLKDGLVLR-------RNSDEV--LVLDRVQREDAGM 158
V G +CRV W KD L+ R + L ++RV+ +D G
Sbjct: 494 VGEGQSANFYCRVIASS-PPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGE 552
Query: 159 YQCHIEDGKYHMLSSGELII 178
Y ++ L +
Sbjct: 553 YTVRAKNSYGTKEEIVFLNV 572
>2edh_A Obscurin; structural genomics, NPPSFA, national project on P
structural and functional analyses, riken structural
genomics/proteomics initiative; NMR {Homo sapiens}
Length = 113
Score = 56.6 bits (137), Expect = 2e-10
Identities = 11/70 (15%), Positives = 23/70 (32%), Gaps = 6/70 (8%)
Query: 232 LNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGS----SLSISHVEESDSG 287
+ + +L C ++W+K + + DR L I + D+G
Sbjct: 29 EEATEGATAVLRCELSKMA--PVEWWKGHETLRDGDRHSLRQDGARCELQIRGLVAEDAG 86
Query: 288 VWNCVANNSE 297
+ C+
Sbjct: 87 EYLCMCGKER 96
Score = 48.1 bits (115), Expect = 2e-07
Identities = 18/76 (23%), Positives = 22/76 (28%), Gaps = 14/76 (18%)
Query: 21 VVVDVGHRIELHCRVSPKRLSSAK-AWLKDGLVLRRNSD---------EVLVLDRVQRED 70
G L C +S A W K LR L + + ED
Sbjct: 29 EEATEGATAVLRCELSKM----APVEWWKGHETLRDGDRHSLRQDGARCELQIRGLVAED 84
Query: 71 AGMYQCHVSADDDSAQ 86
AG Y C + SA
Sbjct: 85 AGEYLCMCGKERTSAM 100
Score = 47.7 bits (114), Expect = 3e-07
Identities = 18/84 (21%), Positives = 24/84 (28%), Gaps = 18/84 (21%)
Query: 106 VVVDVGHRIELHCRVSPKRLSSAK-AWLKDGLVLRRNSD---------EVLVLDRVQRED 155
G L C +S A W K LR L + + ED
Sbjct: 29 EEATEGATAVLRCELSKM----APVEWWKGHETLRDGDRHSLRQDGARCELQIRGLVAED 84
Query: 156 AGMYQCHIEDGKYHMLSSGELIIH 179
AG Y C + +S L +
Sbjct: 85 AGEYLCMCGKER----TSAMLTVR 104
>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C,
C-protein, skeletal muscle fast- isoform, MYBPCF,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 101
Score = 55.8 bits (135), Expect = 3e-10
Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 9/74 (12%)
Query: 232 LNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESD------RIQRIG--SSLSISHVEE 283
V + V + + W K + D R ++ G L S V +
Sbjct: 18 QQVFVGDRVEMAVEV-SEEGAQVMWMKNGVELTREDSFKARYRFKKDGKRHILIFSDVVQ 76
Query: 284 SDSGVWNCVANNSE 297
D G + + N +
Sbjct: 77 EDRGRYQVITNGGQ 90
Score = 50.4 bits (121), Expect = 2e-08
Identities = 23/86 (26%), Positives = 34/86 (39%), Gaps = 19/86 (22%)
Query: 106 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDE-------------VLVLDRVQ 152
V VG R+E+ VS + W+K+G+ L R +L+ V
Sbjct: 18 QQVFVGDRVEMAVEVSEEGAQVM--WMKNGVELTREDSFKARYRFKKDGKRHILIFSDVV 75
Query: 153 REDAGMYQCHIEDGKYHMLSSGELII 178
+ED G YQ G+ ELI+
Sbjct: 76 QEDRGRYQVITNGGQ----CEAELIV 97
Score = 49.3 bits (118), Expect = 5e-08
Identities = 20/79 (25%), Positives = 31/79 (39%), Gaps = 15/79 (18%)
Query: 21 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDE-------------VLVLDRVQ 67
V VG R+E+ VS + W+K+G+ L R +L+ V
Sbjct: 18 QQVFVGDRVEMAVEVSEEGAQVM--WMKNGVELTREDSFKARYRFKKDGKRHILIFSDVV 75
Query: 68 REDAGMYQCHVSADDDSAQ 86
+ED G YQ + A+
Sbjct: 76 QEDRGRYQVITNGGQCEAE 94
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 61.0 bits (147), Expect = 3e-10
Identities = 57/406 (14%), Positives = 121/406 (29%), Gaps = 112/406 (27%)
Query: 5 IQVKSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLD 64
+++ L ++ P+ D I R+ S +A L+ L + + +LVL
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNI-------KLRIHSIQAELRRLLKSKPYENCLLVLL 251
Query: 65 RVQREDAGMYQCHVSADDDSAQMSAQVILGGELVEIASSNQVVVD-VGHRIELHCRVSPK 123
VQ +A + S + IL + + + V D + H +
Sbjct: 252 NVQNAK------AWNAFNLSCK-----IL------LTTRFKQVTDFLSAATTTHISLDH- 293
Query: 124 RLSSAKAWLKDGLVLRRNSDEVL--VLD-RVQ--REDAGMYQCHIEDGKYHMLSSGELII 178
L +L LD R Q + + ++ E I
Sbjct: 294 --------HSMTLT-PDEVKSLLLKYLDCRPQDLPREV----LTTNPRRLSII--AESIR 338
Query: 179 HQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDE 238
+ D ++ C +KLT S+N L E +++ +F +
Sbjct: 339 DGLATWDNWKHVNC---DKLTTIIESSLN--VLEPAEYRKMFDRLSVFPP----SAHIPT 389
Query: 239 SVILPCSAQGNPLPTIKWYKQDSPVEESDRI------------QRIGSSLSI-------- 278
++ ++ W+ D + + Q S++SI
Sbjct: 390 ILL-----------SLIWF--DVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELK 436
Query: 279 SHVEESDS---------GVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEK 329
+E + + ++ + + Y+H +H+ + ++
Sbjct: 437 VKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYF-YSHIGHHLKNIEH--PERMTLF 493
Query: 330 NKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTI----KYR 371
L F + +I + +A G+ L T+ Y+
Sbjct: 494 RMVFLDFR--FLEQKIRHDS------TAWNASGSILNTLQQLKFYK 531
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 58.7 bits (142), Expect = 7e-10
Identities = 9/80 (11%), Positives = 25/80 (31%), Gaps = 3/80 (3%)
Query: 232 LNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIG---SSLSISHVEESDSGV 288
+++ + C + + + + V + L V+ D GV
Sbjct: 256 WEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSVRNGDLFFKKVQVEDGGV 315
Query: 289 WNCVANNSEGQDKMQLFIQY 308
+ C A + + + ++
Sbjct: 316 YTCYAMGETFNETLSVELKV 335
Score = 40.2 bits (94), Expect = 6e-04
Identities = 14/84 (16%), Positives = 27/84 (32%), Gaps = 7/84 (8%)
Query: 3 LFIQVKSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEV-- 60
I + +G + + C + ++ + VL + S+
Sbjct: 238 HNIFSLDFFNCSEYKESAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVS 297
Query: 61 -----LVLDRVQREDAGMYQCHVS 79
L +VQ ED G+Y C+
Sbjct: 298 VRNGDLFFKKVQVEDGGVYTCYAM 321
Score = 39.1 bits (91), Expect = 0.002
Identities = 13/65 (20%), Positives = 25/65 (38%), Gaps = 7/65 (10%)
Query: 104 NQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEV-------LVLDRVQREDA 156
+ +G + + C + ++ + VL + S+ L +VQ ED
Sbjct: 254 SAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSVRNGDLFFKKVQVEDG 313
Query: 157 GMYQC 161
G+Y C
Sbjct: 314 GVYTC 318
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase,
glycoprotein, receptor protei tyrosine phosphatase, cell
adhesion; HET: NAG; 3.10A {Homo sapiens}
Length = 731
Score = 59.4 bits (143), Expect = 8e-10
Identities = 19/134 (14%), Positives = 43/134 (32%), Gaps = 14/134 (10%)
Query: 174 GELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILN 233
EL I + Y+ + G + + + F + + +
Sbjct: 123 AELAISTFWPNF-YQVIFEVITSGHQGYLAID------EVKVLGHPCTRTPHFLRIQNVE 175
Query: 234 VKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDR-------IQRIGSSLSISHVEESDS 286
V + CSA G + + + Q V ++ +R +S ++ + + D+
Sbjct: 176 VNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDA 235
Query: 287 GVWNCVANNSEGQD 300
G + C+ G
Sbjct: 236 GKYRCMIRTEGGVG 249
Score = 48.2 bits (114), Expect = 3e-06
Identities = 20/149 (13%), Positives = 38/149 (25%), Gaps = 16/149 (10%)
Query: 31 LHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHVSADD--DSAQMS 88
++ +V+ L + W G R + L + + +++ A
Sbjct: 96 VYVKVNNGPLGNPI-WNISGDPTRTWNRAELAISTFWPNFYQVIFEVITSGHQGYLAIDE 154
Query: 89 AQVILGG--ELVEIASSNQVVVDVGHRIELHCRVS--PKRLSSAKAWLKDGLVLRRNSDE 144
+V+ V V+ G C D +
Sbjct: 155 VKVLGHPCTRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIK 214
Query: 145 V---------LVLDRVQREDAGMYQCHIE 164
V + + DAG Y+C I
Sbjct: 215 VTSSRRFIASFNVVNTTKRDAGKYRCMIR 243
Score = 44.8 bits (105), Expect = 4e-05
Identities = 16/128 (12%), Positives = 29/128 (22%), Gaps = 26/128 (20%)
Query: 244 CSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQ 303
PL W P +R + L+IS + V V +
Sbjct: 98 VKVNNGPLGNPIWNISGDPTRTWNR-----AELAISTFWPNFYQVIFEVITSGHQGYLAI 152
Query: 304 LFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKDESVILPCSAQGN 363
++ F + + + V + CSA G
Sbjct: 153 DEVKVLGHPCTRTP---------------------HFLRIQNVEVNAGQFATFQCSAIGR 191
Query: 364 PLPTIKYR 371
+ +
Sbjct: 192 TVAGDRLW 199
Score = 35.5 bits (81), Expect = 0.028
Identities = 15/105 (14%), Positives = 26/105 (24%), Gaps = 12/105 (11%)
Query: 20 QVVVDVGHRIELHCRVS--PKRLSSAKAWLKDGLVLRRNSDEV---------LVLDRVQR 68
V V+ G C D +V + +
Sbjct: 173 NVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTK 232
Query: 69 EDAGMYQCHVSADDDSAQMSAQVILGGELVEIASSNQVVVDVGHR 113
DAG Y+C + + S L + + + + VG
Sbjct: 233 RDAGKYRCMIRTEGGVGI-SNYAELVVKEPPVPIAPPQLASVGAT 276
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative
splicing, cell adhesion, cell membrane, glycoprotein,
HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3uro_R
3epc_R* 3epd_R* 3epf_R*
Length = 221
Score = 57.4 bits (138), Expect = 9e-10
Identities = 30/230 (13%), Positives = 67/230 (29%), Gaps = 31/230 (13%)
Query: 98 VEIASSNQVVVDVGHRIELHCRVSPKRLSSAKA----WLKDGLVLRRNSDEVLVLDRVQR 153
V + + QV +G + L C + + W + G + +
Sbjct: 1 VVVQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHG----ESGSMAVFHQTQGP 56
Query: 154 EDAGMYQCHIE-DGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLS 212
+ + L L + + D SY C V G+ +
Sbjct: 57 SYSESKRLEFVAARLGAELRDASLRMFGLRVEDE-GSYTCLFVTFPQGSR-----SVDIW 110
Query: 213 LTENKRLLSAAKMFEKHRILNVKKDESVILPC-SAQGNPLPTIKWYKQDSPVEESDRIQR 271
L +L+ + + + + + + + C S G P I W+ + ++ ++
Sbjct: 111 LR----VLAKPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPQTSQVPG 166
Query: 272 -------IGSSLSISHVEESDSGVWNCVANNSEGQDK----MQLFIQYAH 310
+ S + + D C + + + L + Y H
Sbjct: 167 FLSGTVTVTSLWILVPSSQVDGKQVTCKVEHESFEKPQLLTVSLTVYYPH 216
Score = 47.8 bits (113), Expect = 1e-06
Identities = 26/217 (11%), Positives = 52/217 (23%), Gaps = 59/217 (27%)
Query: 13 IEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKA----WLKDG-----LVLRRNSDEV--- 60
+ + QV +G + L C + + W + G V +
Sbjct: 1 VVVQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSE 60
Query: 61 -------------------LVLDRVQREDAGMYQCHVSADDD-SAQMSAQVILGGELVEI 100
L + ++ ED G Y C S + + + +
Sbjct: 61 SKRLEFVAARLGAELRDASLRMFGLRVEDEGSYTCLFVTFPQGSRSVDIWLRVLAKPQNT 120
Query: 101 ASSNQVVVDVGHRIELHCRVS---PK-RLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDA 156
A +V + C + P +++ W D + + S
Sbjct: 121 AEVQKVQLTGEPVPMARCVSTGGRPPAQIT----WHSDLGGMPQTSQVPGF--------- 167
Query: 157 GMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCR 193
G + S I + C+
Sbjct: 168 -------LSGTVTVTSL---WILVPSSQVDGKQVTCK 194
>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton,
immunoglobulin domain, muscle protein, phosphorylation,
repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A
1tiu_A 2rq8_A
Length = 93
Score = 53.8 bits (130), Expect = 1e-09
Identities = 11/68 (16%), Positives = 23/68 (33%), Gaps = 5/68 (7%)
Query: 234 VKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIG----SSLSISHVEESDSGVW 289
V E+ P +W + P+ S + I L + + + +G
Sbjct: 17 VFVGETAHFEIEL-SEPDVHGQWKLKGQPLAASPDCEIIEDGKKHILILHNCQLGMTGEV 75
Query: 290 NCVANNSE 297
+ A N++
Sbjct: 76 SFQAANTK 83
Score = 47.3 bits (113), Expect = 3e-07
Identities = 16/85 (18%), Positives = 26/85 (30%), Gaps = 15/85 (17%)
Query: 106 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSD---------EVLVLDRVQREDA 156
V V VG +S + W G L + D +L+L Q
Sbjct: 15 VEVFVGETAHFEIELSEPDVHGQ--WKLKGQPLAASPDCEIIEDGKKHILILHNCQLGMT 72
Query: 157 GMYQCHIEDGKYHMLSSGELIIHQV 181
G + K S+ L + ++
Sbjct: 73 GEVSFQAANTK----SAANLKVKEL 93
Score = 46.5 bits (111), Expect = 5e-07
Identities = 14/75 (18%), Positives = 21/75 (28%), Gaps = 11/75 (14%)
Query: 21 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSD---------EVLVLDRVQREDA 71
V V VG +S + W G L + D +L+L Q
Sbjct: 15 VEVFVGETAHFEIELSEPDVHGQ--WKLKGQPLAASPDCEIIEDGKKHILILHNCQLGMT 72
Query: 72 GMYQCHVSADDDSAQ 86
G + +A
Sbjct: 73 GEVSFQAANTKSAAN 87
>1gxe_A Myosin binding protein C, cardiac-type; cytoskeleton, muscle, IGI,
thick filament, immunoglobulin domain; NMR {Homo
sapiens} SCOP: b.1.1.4
Length = 139
Score = 55.1 bits (132), Expect = 1e-09
Identities = 19/111 (17%), Positives = 36/111 (32%), Gaps = 33/111 (29%)
Query: 230 RILNVKKDESVILPCSAQGNPLPTIKWYKQDSP--------------------------- 262
+ V + L G+P PT+ W K +
Sbjct: 26 DTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKK 85
Query: 263 --VEESDRIQ----RIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQ 307
E R++ + S ++ E+ D GV+ N G+D++ L ++
Sbjct: 86 LLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVK 136
Score = 33.6 bits (76), Expect = 0.038
Identities = 19/121 (15%), Positives = 37/121 (30%), Gaps = 39/121 (32%)
Query: 11 LSIEMSPSGQVVVDVGHRIELHCRVS---------------------------PKRLSSA 43
L +VV G+++ L +S P+ +
Sbjct: 18 LDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDS 77
Query: 44 KAWLKDGLVLRRNSDEV----------LVLDRVQREDAGMYQCHVS--ADDDSAQMSAQV 91
W+ D +L V ++ ++ED G+Y V +D ++ +V
Sbjct: 78 DEWVFDKKLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKV 137
Query: 92 I 92
I
Sbjct: 138 I 138
Score = 30.1 bits (67), Expect = 0.49
Identities = 14/105 (13%), Positives = 29/105 (27%), Gaps = 18/105 (17%)
Query: 106 VVVDVGHRIELHCRVS----PKRLSSAKAWLKDG-----LVLRRNSDEVLVLDRVQREDA 156
+VV G+++ L +S P W K R D
Sbjct: 28 IVVVAGNKLRLDVPISGDPAPT-----VIWQKAITQGNKAPARPAPDAPEDTGDSDEWVF 82
Query: 157 GMYQCHIEDGKYHMLSSGE---LIIHQVDESDRYRSYQCRGVNKL 198
+G+ + ++ + + ++ D Y N +
Sbjct: 83 DKKLLCETEGRVRVETTKDRSIFTVEGAEKEDE-GVYTVTVKNPV 126
Score = 29.7 bits (66), Expect = 0.87
Identities = 6/26 (23%), Positives = 10/26 (38%)
Query: 344 RILNVKKDESVILPCSAQGNPLPTIK 369
+ V + L G+P PT+
Sbjct: 26 DTIVVVAGNKLRLDVPISGDPAPTVI 51
>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain,
integrin, allosteric mobility, cell adhesi immune
system; HET: NAG; 2.10A {Homo sapiens}
Length = 196
Score = 55.8 bits (134), Expect = 2e-09
Identities = 33/198 (16%), Positives = 58/198 (29%), Gaps = 29/198 (14%)
Query: 13 IEMSPSGQVVVDVGHRIELHCRVS---PKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQRE 69
++ P V+ G + L+C + P+R + ++G ++D RE
Sbjct: 5 ADLQPR-VAFVERGGSLWLNCSTNCPRPERGGLETSLRRNGTQRGLRWLARQLVDI--RE 61
Query: 70 DAGMYQCHVSADDDSAQMSAQVILGG--ELVEIASSNQVVVDVGHRIELHCRVS----PK 123
C + Q + + VE+ VG L CRV
Sbjct: 62 PETQPVCFFRCARRTLQARGLIRTFQRPDRVELMPLPPWQP-VGENFTLSCRVPGAGPRA 120
Query: 124 RLSSAKAWLKDGLVLRR----------NSDEVLVLDRVQREDAGM-YQCHIEDGKYHMLS 172
L+ L+ L R + +RED G + C E +
Sbjct: 121 SLTL--TLLRGAQELIRRSFAGEPPRARGAVLTATVLARREDHGANFSCRAE---LDLRP 175
Query: 173 SGELIIHQVDESDRYRSY 190
G + R++
Sbjct: 176 HGLGLFENSSAPRELRTF 193
Score = 31.6 bits (71), Expect = 0.24
Identities = 8/73 (10%), Positives = 21/73 (28%), Gaps = 3/73 (4%)
Query: 234 VKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVA 293
V++ S+ L CS ++ + + + E ++ C
Sbjct: 14 VERGGSLWLNCSTNCPRPERGGLETSLRRNGTQRGLRW--LARQLVDIREPETQPV-CFF 70
Query: 294 NNSEGQDKMQLFI 306
+ + + I
Sbjct: 71 RCARRTLQARGLI 83
>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system;
3.00A {Homo sapiens}
Length = 193
Score = 54.6 bits (131), Expect = 5e-09
Identities = 27/168 (16%), Positives = 54/168 (32%), Gaps = 27/168 (16%)
Query: 20 QVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVL----------------------RRNS 57
V +G + L + WL + L R N
Sbjct: 7 MVNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNF 66
Query: 58 DE--VLVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGEL--VEIASSNQVVVDVGHR 113
+ L L ++ ED G Y+ +S + S + + +L +++ + +Q+ ++
Sbjct: 67 TQSYSLQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHSQLFQNMTCE 126
Query: 114 IELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQC 161
+ L C V + + W G L + + V + Y C
Sbjct: 127 LHLTCSVEDADDNVSFRWEALGNTLSSQPN-LTVSWDPRISSEQDYTC 173
Score = 54.6 bits (131), Expect = 5e-09
Identities = 28/193 (14%), Positives = 60/193 (31%), Gaps = 24/193 (12%)
Query: 105 QVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIE 164
V +G + L + WL + + ++ + +
Sbjct: 7 MVNGILGESVTLPLEFPAGEKVNFITWLFN------ETSLAFIVPHETKSPEIHVTNPKQ 60
Query: 165 DGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAK 224
+ + S L + + D SY+ + ++ T A L S L N ++ +
Sbjct: 61 GKRLNFTQSYSLQLSNLKMEDT-GSYRAQ-ISTKTSAKLSSYTLRILRQLRNIQVTN--- 115
Query: 225 MFEKHRILNVKKDESVILPCSAQ-GNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVE- 282
H L + L CS + + + +W + + +L++S
Sbjct: 116 ----HSQLFQNMTCELHLTCSVEDADDNVSFRWEALGNTLSSQ-------PNLTVSWDPR 164
Query: 283 ESDSGVWNCVANN 295
S + C+A N
Sbjct: 165 ISSEQDYTCIAEN 177
Score = 36.5 bits (84), Expect = 0.006
Identities = 15/83 (18%), Positives = 29/83 (34%), Gaps = 20/83 (24%)
Query: 238 ESVILPCSAQ-GNPLPTIKWYKQDSPV------------------EESDRIQRIGS-SLS 277
ESV LP G + I W ++ + ++ R+ S SL
Sbjct: 14 ESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYSLQ 73
Query: 278 ISHVEESDSGVWNCVANNSEGQD 300
+S+++ D+G + +
Sbjct: 74 LSNLKMEDTGSYRAQISTKTSAK 96
Score = 35.3 bits (81), Expect = 0.015
Identities = 15/83 (18%), Positives = 31/83 (37%), Gaps = 3/83 (3%)
Query: 12 SIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDA 71
+I+++ Q+ ++ + L C V + + W G L + + V +
Sbjct: 110 NIQVTNHSQLFQNMTCELHLTCSVEDADDNVSFRWEALGNTLSSQPN-LTVSWDPRISSE 168
Query: 72 GMYQCHVS--ADDDSAQMSAQVI 92
Y C + S +SAQ +
Sbjct: 169 QDYTCIAENAVSNLSFSVSAQKL 191
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily.,
cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Length = 231
Score = 54.4 bits (130), Expect = 9e-09
Identities = 39/232 (16%), Positives = 67/232 (28%), Gaps = 39/232 (16%)
Query: 106 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIED 165
V V G + L C + W R+ + + H
Sbjct: 10 VEVMRGKSVILDCTPTGTHDHYMLEWFLTD----RSGARPRLASAEMQGSELQVTMHDTR 65
Query: 166 GK---YHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSA 222
G+ Y + S G L++ + D R Y C G L + +
Sbjct: 66 GRSPPYQLDSQGRLVLAEAQVGD-ERDYVCVVRAGAAG-----TAEATARLNVFAKPEAT 119
Query: 223 AKMFEKHRILNVKKDESVILPC-SAQGNPLPTIKWYKQDSPVEESDRIQRIG-------- 273
K + ++ I C S GNP P I WY+ +E + G
Sbjct: 120 EVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVR 179
Query: 274 ---------SSLSISHVEESDSGVWNCVANNSEGQDK--------MQLFIQY 308
S+L + ++ ++C A+ S + + L + Y
Sbjct: 180 EASGLLSLTSTLYLRLRKDDRDASFHCAAHYSLPEGRHGRLDSPTFHLTLHY 231
Score = 51.7 bits (123), Expect = 8e-08
Identities = 32/207 (15%), Positives = 56/207 (27%), Gaps = 43/207 (20%)
Query: 21 VVVDVGHRIELHCRVSPKRLSSAKAWLKDG-----------------------------L 51
V V G + L C + W
Sbjct: 10 VEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSP 69
Query: 52 VLRRNSDEVLVLDRVQREDAGMYQCHVSADDD-SAQMSAQVILGGE----LVEIASSNQV 106
+ +S LVL Q D Y C V A +A+ +A++ + + V
Sbjct: 70 PYQLDSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTLS 129
Query: 107 VVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDG 166
V++ + C + W ++G L + R G
Sbjct: 130 VMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVRE------ASG 183
Query: 167 KYHMLSSGELIIHQVDESDRYRSYQCR 193
+ S+ L ++ + DR S+ C
Sbjct: 184 LLSLTSTLYL---RLRKDDRDASFHCA 207
>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion
protein, immunoglobulin fold, I-SET fold, cell adhesion
glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
PDB: 1bqs_A*
Length = 210
Score = 54.1 bits (129), Expect = 1e-08
Identities = 24/137 (17%), Positives = 42/137 (30%), Gaps = 14/137 (10%)
Query: 16 SPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDE----VLVLDRVQREDA 71
P V V +G +L CR++ ++ W L + VL + A
Sbjct: 12 PPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLGAVQSDTGRSVLTVRNASLSAA 71
Query: 72 GMYQCHVSADDDSAQMSAQ--VILGGELVEIASSNQVVVDVGHRIELHCRVS----PKRL 125
G C S + Q + Q V + ++ + V E+ C
Sbjct: 72 GTRVCVGSCGGRTFQHTVQLLVYAFPNQLTVSPAAL----VPGDPEVACTAHKVTPVDPN 127
Query: 126 SSAKAWLKDGLVLRRNS 142
+ + + L G L
Sbjct: 128 ALSFSLLVGGQELEGAQ 144
Score = 49.9 bits (118), Expect = 3e-07
Identities = 12/79 (15%), Positives = 30/79 (37%), Gaps = 2/79 (2%)
Query: 230 RILNVKKDESVILPCSAQG-NPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGV 288
++ V S L C + +++W D+ + + + S L++ + S +G
Sbjct: 15 PVVAVALGASRQLTCRLACADRGASVQWRGLDTSLG-AVQSDTGRSVLTVRNASLSAAGT 73
Query: 289 WNCVANNSEGQDKMQLFIQ 307
CV + + + +
Sbjct: 74 RVCVGSCGGRTFQHTVQLL 92
Score = 43.0 bits (100), Expect = 6e-05
Identities = 15/84 (17%), Positives = 28/84 (33%), Gaps = 4/84 (4%)
Query: 102 SSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDE----VLVLDRVQREDAG 157
V V +G +L CR++ ++ W L + VL + AG
Sbjct: 13 PEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLGAVQSDTGRSVLTVRNASLSAAG 72
Query: 158 MYQCHIEDGKYHMLSSGELIIHQV 181
C G + +L+++
Sbjct: 73 TRVCVGSCGGRTFQHTVQLLVYAF 96
>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW-
type/skeletal muscle SLOW-isoform, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Length = 103
Score = 51.2 bits (123), Expect = 1e-08
Identities = 11/73 (15%), Positives = 22/73 (30%), Gaps = 7/73 (9%)
Query: 232 LNVKKDESVILPCSAQGNPLPTIKWYKQDSPV--EESDRIQRIG----SSLSISHVEESD 285
E V L C +KW+K + R + L I ++D
Sbjct: 17 TTAYCGERVELECEV-SEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKAD 75
Query: 286 SGVWNCVANNSEG 298
+ ++ + +
Sbjct: 76 AAEYSVMTTGGQS 88
Score = 50.0 bits (120), Expect = 3e-08
Identities = 18/83 (21%), Positives = 30/83 (36%), Gaps = 15/83 (18%)
Query: 21 VVVDVGHRIELHCRVSPKRLSSAK-AWLKDGLVLRRNSDE-----------VLVLDRVQR 68
G R+EL C VS A W K+G + +L+++ +
Sbjct: 17 TTAYCGERVELECEVSED---DANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATK 73
Query: 69 EDAGMYQCHVSADDDSAQMSAQV 91
DA Y + SA++S +
Sbjct: 74 ADAAEYSVMTTGGQSSAKLSVDL 96
Score = 49.6 bits (119), Expect = 5e-08
Identities = 19/86 (22%), Positives = 30/86 (34%), Gaps = 19/86 (22%)
Query: 106 VVVDVGHRIELHCRVSPKRLSSAK-AWLKDGLVLRRNSDE-----------VLVLDRVQR 153
G R+EL C VS A W K+G + +L+++ +
Sbjct: 17 TTAYCGERVELECEVSED---DANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATK 73
Query: 154 EDAGMYQCHIEDGKYHMLSSGELIIH 179
DA Y G+ SS +L +
Sbjct: 74 ADAAEYSVMTTGGQ----SSAKLSVD 95
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 53.6 bits (129), Expect = 4e-08
Identities = 18/82 (21%), Positives = 35/82 (42%), Gaps = 6/82 (7%)
Query: 232 LNVKKDESVILPCSAQGNPLPTIKWYKQD----SPVEESDRIQRIGS-SLSISHVEESDS 286
LNV + + L C A L ++ W + + RI + +L+ ++V D+
Sbjct: 351 LNVTEGMAAELKCRA-STSLTSVSWITPNGTVMTHGAYKVRIAVLSDGTLNFTNVTVQDT 409
Query: 287 GVWNCVANNSEGQDKMQLFIQY 308
G++ C+ +NS G +
Sbjct: 410 GMYTCMVSNSVGNTTASATLNV 431
Score = 40.9 bits (96), Expect = 5e-04
Identities = 23/89 (25%), Positives = 35/89 (39%), Gaps = 16/89 (17%)
Query: 17 PSGQVVVDVGHRIELHCRVS-PKRLSSAKAWLK-DGLVLRRNS---------DEVLVLDR 65
P + V G EL CR S ++ +W+ +G V+ + D L
Sbjct: 347 PPADLNVTEGMAAELKCRASTSL---TSVSWITPNGTVMTHGAYKVRIAVLSDGTLNFTN 403
Query: 66 VQREDAGMYQCHVS--ADDDSAQMSAQVI 92
V +D GMY C VS + +A + V
Sbjct: 404 VTVQDTGMYTCMVSNSVGNTTASATLNVT 432
Score = 38.6 bits (90), Expect = 0.002
Identities = 18/73 (24%), Positives = 28/73 (38%), Gaps = 14/73 (19%)
Query: 100 IASSNQVVVDVGHRIELHCRVS-PKRLSSAKAWLK-DGLVLRRNS---------DEVLVL 148
+ + V G EL CR S ++ +W+ +G V+ + D L
Sbjct: 345 VEPPADLNVTEGMAAELKCRASTSL---TSVSWITPNGTVMTHGAYKVRIAVLSDGTLNF 401
Query: 149 DRVQREDAGMYQC 161
V +D GMY C
Sbjct: 402 TNVTVQDTGMYTC 414
>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A
{Homo sapiens}
Length = 184
Score = 51.4 bits (123), Expect = 6e-08
Identities = 30/175 (17%), Positives = 54/175 (30%), Gaps = 18/175 (10%)
Query: 8 KSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQ 67
K SL S +V + + L C+ P K ++ L + ++
Sbjct: 8 KPSLQALPSS----LVPLEKPVTLRCQGPPG--VDLYRLEKLSSSRYQDQAV-LFIPAMK 60
Query: 68 REDAGMYQCHVSADDDSAQMSA----QVILGGELVEIASSNQVVVDVGHRIELHCRVSPK 123
R AG Y+C + S +++ V G + L C +
Sbjct: 61 RSLAGRYRCSYQNGSLWSLPSDQLELVATGVFAKPSLSAQPGPAVSSGGDVTLQC--QTR 118
Query: 124 RLSSAKAWLKDG-LVLRRNSDEV----LVLDRVQREDAGMYQCHIEDGKYHMLSS 173
A K+G +N + + V +G Y+C+ + L S
Sbjct: 119 YGFDQFALYKEGDPAPYKNPERWYRASFPIITVTAAHSGTYRCYSFSSRDPYLWS 173
Score = 39.0 bits (91), Expect = 8e-04
Identities = 32/190 (16%), Positives = 56/190 (29%), Gaps = 41/190 (21%)
Query: 107 VVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDG 166
+V + + L C+ P K ++ L + ++R AG Y+C ++G
Sbjct: 18 LVPLEKPVTLRCQGPPG--VDLYRLEKLSSSRYQDQAV-LFIPAMKRSLAGRYRCSYQNG 74
Query: 167 KYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMF 226
L S +L + + LS G
Sbjct: 75 SLWSLPSDQLELV---------------ATGVFAKPSLSAQPGP---------------- 103
Query: 227 EKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDS 286
V V L C + YK+ P + + +S I V + S
Sbjct: 104 ------AVSSGGDVTLQCQTR-YGFDQFALYKEGDPAPYKNPERWYRASFPIITVTAAHS 156
Query: 287 GVWNCVANNS 296
G + C + +S
Sbjct: 157 GTYRCYSFSS 166
Score = 30.9 bits (70), Expect = 0.42
Identities = 13/67 (19%), Positives = 21/67 (31%), Gaps = 11/67 (16%)
Query: 234 VKKDESVILPCSAQGNPLPTIK--WYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNC 291
V ++ V L C P K S + + L I ++ S +G + C
Sbjct: 19 VPLEKPVTLRCQG---PPGVDLYRLEKLSSSRYQDQ------AVLFIPAMKRSLAGRYRC 69
Query: 292 VANNSEG 298
N
Sbjct: 70 SYQNGSL 76
>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein,
immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG;
2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB:
1p9m_C 2arw_A
Length = 325
Score = 52.6 bits (125), Expect = 6e-08
Identities = 16/81 (19%), Positives = 27/81 (33%), Gaps = 3/81 (3%)
Query: 230 RILNVKKDESVILPCSAQ-GNPLPTIKWYKQDSPV-EESDRIQRIGSSLSISHVEESDSG 287
+L +SV L C T+ W + R +G L + V+ DSG
Sbjct: 14 GVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRRLLLRSVQLHDSG 73
Query: 288 VWNCVANNSEGQDKMQLFIQY 308
++C + L +
Sbjct: 74 NYSCYRAGRP-AGTVHLLVDV 93
Score = 47.9 bits (113), Expect = 2e-06
Identities = 18/117 (15%), Positives = 35/117 (29%), Gaps = 12/117 (10%)
Query: 17 PSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEV------LVLDRVQRED 70
G + G + L C ++ W+ + L+L VQ D
Sbjct: 12 ARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRRLLLRSVQLHD 71
Query: 71 AGMYQCHVSADDDSAQMSAQVILGGELVEIASSNQVVVDVGHRIELHCRVSPKRLSS 127
+G Y C+ + + + V + E ++ + C P+ S
Sbjct: 72 SGNYSCYRA-GRPAGTVHLLVDVPPEEPQL-----SCFRKSPLSNVVCEWGPRSTPS 122
Score = 46.4 bits (109), Expect = 6e-06
Identities = 16/95 (16%), Positives = 30/95 (31%), Gaps = 10/95 (10%)
Query: 98 VEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEV------LVLDRV 151
E+A + G + L C ++ W+ + L+L V
Sbjct: 9 QEVARGVLTSL-PGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRRLLLRSV 67
Query: 152 QREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDR 186
Q D+G Y C+ + L++ E +
Sbjct: 68 QLHDSGNYSCYRAG---RPAGTVHLLVDVPPEEPQ 99
>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold,
natural killer cell receptor, immune SY; HET: NAG; 1.80A
{Homo sapiens} PDB: 1im9_D
Length = 316
Score = 52.2 bits (125), Expect = 9e-08
Identities = 52/308 (16%), Positives = 83/308 (26%), Gaps = 62/308 (20%)
Query: 8 KSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLR-----RNSDEVLV 62
K LS S VV G + L C + + K+ + R E
Sbjct: 24 KPFLSAWPSA----VVPRGGHVTLRCHYRHR--FNNFMLYKEDRIHIPIFHGRIFQESFN 77
Query: 63 LDRVQREDAGMYQCHVSADDDSA---QMSAQVILGGELVEIASSNQV-------VVDVGH 112
+ V AG Y C S S V++ +V +V G
Sbjct: 78 MSPVTTAHAGNYTCRGSHPHSPTGWSAPSNPVVI---MVTGNHRKPSLLAHPGPLVKSGE 134
Query: 113 RIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLS 172
R+ L C + L + V + G +S
Sbjct: 135 RVILQCWSDIM---------FEHFFLHKEGISKDPSRLVGQIHDG-------------VS 172
Query: 173 SGELIIHQVDESDRYRSYQCRGVNKLT--GASLLSVNRGRLSLTENKRL--LSAAKMFEK 228
I + + +Y+C G T S S + + +T LSA
Sbjct: 173 KANFSIGPMMLALA-GTYRCYGSVTHTPYQLSAPS-DPLDIVVTGPYEKPSLSA------ 224
Query: 229 HRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGS---SLSISHVEESD 285
V+ ESV L CS++ + ++ E R + +
Sbjct: 225 QPGPKVQAGESVTLSCSSRSSYD-MYHLSREGGAHERRLPAVRKVNRTFQADFPLGPATH 283
Query: 286 SGVWNCVA 293
G + C
Sbjct: 284 GGTYRCFG 291
Score = 39.5 bits (92), Expect = 0.001
Identities = 38/204 (18%), Positives = 60/204 (29%), Gaps = 51/204 (25%)
Query: 107 VVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLR-----RNSDEVLVLDRVQREDAGMYQC 161
VV G + L C + + K+ + R E + V AG Y C
Sbjct: 34 VVPRGGHVTLRCHYRHR--FNNFMLYKEDRIHIPIFHGRIFQESFNMSPVTTAHAGNYTC 91
Query: 162 HIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKR--L 219
+ + TG S S N + +T N R
Sbjct: 92 -----------------------------RGSHPHSPTGWSAPS-NPVVIMVTGNHRKPS 121
Query: 220 LSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSS---- 275
L A H VK E VIL C + +K+ + S + +I
Sbjct: 122 LLA------HPGPLVKSGERVILQCWSDIMF-EHFFLHKEGISKDPSRLVGQIHDGVSKA 174
Query: 276 -LSISHVEESDSGVWNCVANNSEG 298
SI + + +G + C + +
Sbjct: 175 NFSIGPMMLALAGTYRCYGSVTHT 198
>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A*
1ow0_C*
Length = 218
Score = 51.0 bits (122), Expect = 1e-07
Identities = 32/183 (17%), Positives = 65/183 (35%), Gaps = 22/183 (12%)
Query: 8 KSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN--------SDE 59
+S + SP V+ + +++ C+ + + +K+ +D
Sbjct: 9 MPFISAKSSP----VIPLDGSVKIQCQAIREAYLTQLMIIKNSTYREIGRRLKFWNETDP 64
Query: 60 VLVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGELV----EIASSNQVVVDVGHRIE 115
V+D + AG YQC + S + L + +++ +V+ G I
Sbjct: 65 EFVIDHMDANKAGRYQCQYRIGHYRFRYSDTLELVVTGLYGKPFLSADRGLVLMPGENIS 124
Query: 116 LHCRVSPKRLSSAKAWLKDG---LVLRRNSDE--VLVLDRVQREDAGMYQCHIEDGKYHM 170
L C S + K+G L ++ + L V +G+Y+C+ +
Sbjct: 125 LTCS-SAHIPFDRFSLAKEGELSLPQHQSGEHPANFSLGPVDLNVSGIYRCYGWYNRSPY 183
Query: 171 LSS 173
L S
Sbjct: 184 LWS 186
Score = 41.0 bits (96), Expect = 2e-04
Identities = 33/198 (16%), Positives = 63/198 (31%), Gaps = 45/198 (22%)
Query: 107 VVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRN--------SDEVLVLDRVQREDAGM 158
V+ + +++ C+ + + +K+ +D V+D + AG
Sbjct: 19 VIPLDGSVKIQCQAIREAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGR 78
Query: 159 YQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKR 218
YQC G Y S L + V L G LS +RG +
Sbjct: 79 YQCQYRIGHYRFRYSDTLELV---------------VTGLYGKPFLSADRGLV------- 116
Query: 219 LLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSI 278
+ E++ L CS+ P K+ + ++ S+
Sbjct: 117 ---------------LMPGENISLTCSSAHIPFDRFSLAKEGELSLPQHQSGEHPANFSL 161
Query: 279 SHVEESDSGVWNCVANNS 296
V+ + SG++ C +
Sbjct: 162 GPVDLNVSGIYRCYGWYN 179
Score = 39.9 bits (93), Expect = 6e-04
Identities = 25/139 (17%), Positives = 47/139 (33%), Gaps = 25/139 (17%)
Query: 234 VKKDESVILPC-SAQGNPLPTIKWYKQDSPVEESDRIQRIGSS---LSISHVEESDSGVW 289
+ D SV + C + + L + K + E R++ + I H++ + +G +
Sbjct: 20 IPLDGSVKIQCQAIREAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRY 79
Query: 290 NCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVK 349
C ++ + S L + K LSA R L +
Sbjct: 80 QCQYRIGHY--------RFRY-------SDTLELVVTGLYGKPFLSA------DRGLVLM 118
Query: 350 KDESVILPCSAQGNPLPTI 368
E++ L CS+ P
Sbjct: 119 PGENISLTCSSAHIPFDRF 137
>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural
genomics, PSI-biology, NEW YORK struc genomics research
consortium, nysgrc; 2.30A {Homo sapiens}
Length = 124
Score = 48.8 bits (116), Expect = 2e-07
Identities = 14/84 (16%), Positives = 36/84 (42%), Gaps = 13/84 (15%)
Query: 232 LNVKKDESVILPCSAQGNPLPTIKW--------YKQDSPVEESDRIQRIGS-----SLSI 278
+ V++ +++ L C +++W + + PV ++ + Q + S+++
Sbjct: 11 ITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQLSITV 70
Query: 279 SHVEESDSGVWNCVANNSEGQDKM 302
+V D GV+ C+ + K
Sbjct: 71 PNVTLQDEGVYKCLHYSDSVSTKE 94
Score = 38.4 bits (89), Expect = 7e-04
Identities = 18/79 (22%), Positives = 30/79 (37%), Gaps = 19/79 (24%)
Query: 21 VVVDVGHRIELHCRVSPKRLSSAKAWLK-DGLVLRRNSDEV-----------------LV 62
+ V+ G + L C S ++ SS WL G + N V +
Sbjct: 11 ITVEEGQTLTLKCVTSLRKNSSL-QWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQLSIT 69
Query: 63 LDRVQREDAGMYQCHVSAD 81
+ V +D G+Y+C +D
Sbjct: 70 VPNVTLQDEGVYKCLHYSD 88
Score = 37.3 bits (86), Expect = 0.002
Identities = 17/82 (20%), Positives = 29/82 (35%), Gaps = 19/82 (23%)
Query: 100 IASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLK-DGLVLRRNSDEV------------- 145
+ + V+ G + L C S ++ SS WL G + N V
Sbjct: 5 TNHTETITVEEGQTLTLKCVTSLRKNSSL-QWLTPSGFTIFLNEYPVLKNSKYQLLHHSA 63
Query: 146 ----LVLDRVQREDAGMYQCHI 163
+ + V +D G+Y+C
Sbjct: 64 NQLSITVPNVTLQDEGVYKCLH 85
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 51.7 bits (124), Expect = 2e-07
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 7/76 (9%)
Query: 230 RILNVKKDESVILPCSAQGNPLPTIKWYKQD----SPVEESDRIQRIGS-SLSISHVEES 284
R LN+ + L C P+ ++KW + S RI + +L+ SHV S
Sbjct: 360 RDLNISEGRMAELKCRT--PPMSSVKWLLPNGTVLSHASRHPRISVLNDGTLNFSHVLLS 417
Query: 285 DSGVWNCVANNSEGQD 300
D+GV+ C+ N G
Sbjct: 418 DTGVYTCMVTNVAGNS 433
Score = 44.0 bits (104), Expect = 5e-05
Identities = 20/70 (28%), Positives = 25/70 (35%), Gaps = 13/70 (18%)
Query: 20 QVVVDVGHRIELHCRVSPKRLSSAKAWLKD-GLVLRRNSDEV---------LVLDRVQRE 69
+ + G EL CR P S+ WL G VL S L V
Sbjct: 361 DLNISEGRMAELKCRTPPM---SSVKWLLPNGTVLSHASRHPRISVLNDGTLNFSHVLLS 417
Query: 70 DAGMYQCHVS 79
D G+Y C V+
Sbjct: 418 DTGVYTCMVT 427
Score = 43.2 bits (102), Expect = 8e-05
Identities = 19/72 (26%), Positives = 25/72 (34%), Gaps = 13/72 (18%)
Query: 100 IASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKD-GLVLRRNSDEV---------LVLD 149
+ + + + G EL CR P S+ WL G VL S L
Sbjct: 356 MDAPRDLNISEGRMAELKCRTPPM---SSVKWLLPNGTVLSHASRHPRISVLNDGTLNFS 412
Query: 150 RVQREDAGMYQC 161
V D G+Y C
Sbjct: 413 HVLLSDTGVYTC 424
>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B
Length = 171
Score = 49.2 bits (117), Expect = 2e-07
Identities = 28/198 (14%), Positives = 59/198 (29%), Gaps = 38/198 (19%)
Query: 103 SNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCH 162
S Q+ V + H + ++ ++ D+V L+ + ++
Sbjct: 2 SQQIYGVVYGNVTFHVPSNVP---------LKEVLWKKQKDKVAELENSEFRAFSSFK-- 50
Query: 163 IEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSA 222
+ Y SG L I+ + SD Y+ N + + L + +
Sbjct: 51 --NRVYLDTVSGSLTIYNLTSSDE-DEYEMESPN--------ITDTMKFFLYVLEMV--- 96
Query: 223 AKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVE 282
K I + + L C +K Y+ + ++S+
Sbjct: 97 ----SKPMI--YWECSNATLTCEVLEGTDVELKLYQGKEHLRS-------LRQKTMSYQW 143
Query: 283 ESDSGVWNCVANNSEGQD 300
+ + C A N Q+
Sbjct: 144 TNLRAPFKCKAVNRVSQE 161
Score = 48.0 bits (114), Expect = 6e-07
Identities = 17/85 (20%), Positives = 29/85 (34%), Gaps = 15/85 (17%)
Query: 238 ESVILPCSAQGNPLPTIKWYKQDSPVEE------------SDRIQRIGS--SLSISHVEE 283
+V + PL + W KQ V E +R+ SL+I ++
Sbjct: 11 GNVTFHVPS-NVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTS 69
Query: 284 SDSGVWNCVANNSEGQDKMQLFIQY 308
SD + + N K L++
Sbjct: 70 SDEDEYEMESPNITDTMKFFLYVLE 94
Score = 44.1 bits (104), Expect = 1e-05
Identities = 22/169 (13%), Positives = 41/169 (24%), Gaps = 37/169 (21%)
Query: 18 SGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDG-LVLRRNSDEV---------------- 60
S Q+ V + H + W K V + E
Sbjct: 2 SQQIYGVVYGNVTFHVPSNVP--LKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVS 59
Query: 61 --LVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGELVEIASSNQVVVDVGHRIELHC 118
L + + D Y+ D+ + V+ E+ S + + + L C
Sbjct: 60 GSLTIYNLTSSDEDEYEMESPNITDTMKFFLYVL------EMVSKPMIYWECSN-ATLTC 112
Query: 119 RV---SPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIE 164
V + L + L S + ++C
Sbjct: 113 EVLEGTDVELK----LYQGKEHL--RSLRQKTMSYQWTNLRAPFKCKAV 155
>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily,
immune system; HET: NAG; 3.00A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.3 PDB: 1i8l_A*
Length = 201
Score = 49.6 bits (118), Expect = 2e-07
Identities = 24/205 (11%), Positives = 56/205 (27%), Gaps = 27/205 (13%)
Query: 105 QVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLR-RNSDEVLVLDRVQREDAGMYQCHI 163
V +V L C + L + + VL + Y+
Sbjct: 3 HVTKEVKEVATLSCGHNVSVEE-----LAQTRIYWQKEKKMVLTMMSGDMNIWPEYK--- 54
Query: 164 EDGKYHMLSSGE--LIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLS 221
+ + ++I + SD +Y+C V K + + ++L+
Sbjct: 55 --NRTIFDITNNLSIVILALRPSDE-GTYECV-VLKYEKDAFKREHLAEVTLSVKA---- 106
Query: 222 AAKMFEKHRILNVKKDESVILPCSAQG-NPLPTIKWYKQD---SPVEESDRIQRIGSSLS 277
+ + CS G P P + W + + + + +
Sbjct: 107 -DFPTPSISDFEIPTSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDPETELYA 165
Query: 278 IS---HVEESDSGVWNCVANNSEGQ 299
+S + + + C+ +
Sbjct: 166 VSSKLDFNMTTNHSFMCLIKYGHLR 190
Score = 45.4 bits (107), Expect = 7e-06
Identities = 33/218 (15%), Positives = 60/218 (27%), Gaps = 61/218 (27%)
Query: 20 QVVVDVGHRIELHCRVSPKRLSSAKA---WLKDG---LVLRRNSDEV------------- 60
V +V L C + A+ W K+ L + +
Sbjct: 3 HVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDIT 62
Query: 61 ----LVLDRVQREDAGMYQCHVSADDDS-------AQMSAQVILGGELVEIASSNQVVVD 109
+V+ ++ D G Y+C V + A+++ V I + +
Sbjct: 63 NNLSIVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPSI---SDFEIP 119
Query: 110 VGHRIELHCRVS---PK-RLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIED 165
+ + C S P+ LS WL++G L + V E
Sbjct: 120 TSNIRRIICSTSGGFPEPHLS----WLENGEELNAINTTVSQDP--------------ET 161
Query: 166 GKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASL 203
Y + S L + S+ C +
Sbjct: 162 ELYAVSSK--LDFN----MTTNHSFMCLIKYGHLRVNQ 193
Score = 42.3 bits (99), Expect = 8e-05
Identities = 26/163 (15%), Positives = 43/163 (26%), Gaps = 43/163 (26%)
Query: 231 ILNVKKD--ESVILPC----SAQGNPLPTIKWYKQDSPV------------EESDRIQRI 272
+++V K+ E L C S + I W K+ V E +R
Sbjct: 1 VIHVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFD 60
Query: 273 GS---SLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEK 329
+ S+ I + SD G + CV E + + I
Sbjct: 61 ITNNLSIVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPSI------- 113
Query: 330 NKRLLSAAKMFEKHRILNVKKDESVILPCSAQG-NPLPTIKYR 371
+ + CS G P P + +
Sbjct: 114 --------------SDFEIPTSNIRRIICSTSGGFPEPHLSWL 142
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 51.6 bits (123), Expect = 3e-07
Identities = 57/340 (16%), Positives = 105/340 (30%), Gaps = 128/340 (37%)
Query: 67 QREDAGM----YQCHVSADD--DSAQMSAQVILGGELVEIASSNQVVVDVGHRIELHCRV 120
Q + GM Y+ +A D + A + G +++I +N
Sbjct: 1627 QEQ--GMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINN---------------- 1668
Query: 121 SPKRLSSAKAWL---KDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELI 177
P L + G +R N A +++ I DGK E I
Sbjct: 1669 -PVNL----TIHFGGEKGKRIRENYS------------AMIFE-TIVDGK----LKTEKI 1706
Query: 178 IHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKR----LLSAAKMFE--KHRI 231
+++E SY R +G LS T+ + L+ A FE K +
Sbjct: 1707 FKEINEHST--SYTFRS------------EKGLLSATQFTQPALTLMEKA-AFEDLKSK- 1750
Query: 232 LNVKKDESVI----------LPCSAQGNPLP-TIK-------WYKQDSPVEESDR----- 268
+ ++ L A + ++ + P +E R
Sbjct: 1751 -GLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGM 1809
Query: 269 ----IQRIGSSLSISHVEE------SDSGVWNC-VAN-NSEGQDKMQLFIQYAHGKYHML 316
R+ +S S ++ +G W + N N E Q QY
Sbjct: 1810 IAINPGRVAASFSQEALQYVVERVGKRTG-WLVEIVNYNVENQ-------QYV------- 1854
Query: 317 SSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKDESVIL 356
++G+L +D + + + +I ++ +S+ L
Sbjct: 1855 AAGDL--RALDT----VTNVLNFIKLQKIDIIELQKSLSL 1888
Score = 40.8 bits (95), Expect = 6e-04
Identities = 29/147 (19%), Positives = 49/147 (33%), Gaps = 38/147 (25%)
Query: 10 SLSI--EMSPSGQVVVDV---GHRI-E---LHCRVSPKRLSSAKAW-LKDG--LVLRR-N 56
+ ++ G + D GH + E L A ++ +V R
Sbjct: 1740 EKAAFEDLKSKGLIPADATFAGHSLGEYAALAS--------LADVMSIESLVEVVFYRGM 1791
Query: 57 SDEVLV-LDRVQREDAGMY-----QCHVSADDDSAQMSAQVIL--GGELVEIA---SSNQ 105
+ +V V D + R + GM + S ++ Q + + G LVEI NQ
Sbjct: 1792 TMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQ 1851
Query: 106 VVVDVGHR--IELHCRVSPKRLSSAKA 130
V G ++ V L+ K
Sbjct: 1852 QYVAAGDLRALDTVTNV----LNFIKL 1874
>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding
domain of CD48, immune system; HET: NAG; 2.60A {Rattus
norvegicus}
Length = 180
Score = 48.3 bits (115), Expect = 6e-07
Identities = 26/199 (13%), Positives = 63/199 (31%), Gaps = 40/199 (20%)
Query: 102 SSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDG---LVLRRNSDEVLVLDRVQREDAGM 158
S V G + L P WL ++ + + V + +
Sbjct: 5 SVPNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFE-------SV 57
Query: 159 YQCHIEDGKYHML-SSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENK 217
++ + + ++G L I+ V + DR Y R +++ + ++ ++++ +
Sbjct: 58 FK-----DRVDLDKTNGALRIYNVSKEDR-GDYYMRMLHE-------TEDQWKITMEVYE 104
Query: 218 RLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLS 277
+ K I + + L C +K Y+ + +
Sbjct: 105 MV-------SKPMI--YWECSNATLTCEVLEGTDVELKLYQGKEHLRS-------LRQKT 148
Query: 278 ISHVEESDSGVWNCVANNS 296
+S+ + + C A N
Sbjct: 149 MSYQWTNLRAPFKCKAVNR 167
Score = 41.8 bits (98), Expect = 9e-05
Identities = 24/169 (14%), Positives = 40/169 (23%), Gaps = 37/169 (21%)
Query: 21 VVVDVGHRIELHCRVSPKRLSSAKAWLK--DGLVLRRNSDEV------------------ 60
V G + L P WL + +L +
Sbjct: 9 VNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKTN 68
Query: 61 --LVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGELVEIASSNQVVVDVGHRIELHC 118
L + V +ED G Y + + Q + V S ++ L C
Sbjct: 69 GALRIYNVSKEDRGDYYMRML-HETEDQWKITME-----VYEMVSKPMIYWECSNATLTC 122
Query: 119 RV---SPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIE 164
V + L + LR S + ++C
Sbjct: 123 EVLEGTDVELK----LYQGKEHLR--SLRQKTMSYQWTNLRAPFKCKAV 165
Score = 37.6 bits (87), Expect = 0.003
Identities = 11/88 (12%), Positives = 22/88 (25%), Gaps = 18/88 (20%)
Query: 232 LNVKKDESVILPCSA-QGNPLPTIKWYKQDSPV---------------EESDRIQRIGS- 274
+N +V L + W + DR+ +
Sbjct: 9 VNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKTN 68
Query: 275 -SLSISHVEESDSGVWNCVANNSEGQDK 301
+L I +V + D G + +
Sbjct: 69 GALRIYNVSKEDRGDYYMRMLHETEDQW 96
>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond,
glycoprotein, immunoglobulin membrane, transmembrane;
HET: NAG; 2.21A {Mus musculus}
Length = 108
Score = 46.0 bits (109), Expect = 1e-06
Identities = 16/74 (21%), Positives = 28/74 (37%), Gaps = 13/74 (17%)
Query: 234 VKKDESVILPCSAQGNPLPTIKWYKQDS--------PVEESDRIQRIGS-----SLSISH 280
V + + IL C N +++W +RI+ + + S+S+S
Sbjct: 18 VVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISVSD 77
Query: 281 VEESDSGVWNCVAN 294
V SD G + C
Sbjct: 78 VSLSDEGQYTCSLF 91
Score = 42.9 bits (101), Expect = 1e-05
Identities = 16/91 (17%), Positives = 29/91 (31%), Gaps = 22/91 (24%)
Query: 21 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGL-----------------VLRRNSDEV-LV 62
V V G L CRV +++ W ++R + E+ +
Sbjct: 16 VTVVEGGTAILTCRVDQND-NTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSIS 74
Query: 63 LDRVQREDAGMYQCHVSADDDSAQMSAQVIL 93
+ V D G Y C + +++ L
Sbjct: 75 VSDVSLSDEGQYTCSLFTMP---VKTSKAYL 102
Score = 40.6 bits (95), Expect = 8e-05
Identities = 17/88 (19%), Positives = 29/88 (32%), Gaps = 20/88 (22%)
Query: 94 GGELVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGL----------------- 136
G + + N V V G L CRV +++ W
Sbjct: 5 GSQGQFPLTQN-VTVVEGGTAILTCRVDQND-NTSLQWSNPAQQTLYFDDKKALRDNRIE 62
Query: 137 VLRRNSDEV-LVLDRVQREDAGMYQCHI 163
++R + E+ + + V D G Y C +
Sbjct: 63 LVRASWHELSISVSDVSLSDEGQYTCSL 90
>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor,
two-domain structure, V-SET, C2-SET, IG-like domain,
6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens}
PDB: 2zg3_A* 2zg2_A
Length = 214
Score = 47.5 bits (112), Expect = 2e-06
Identities = 40/227 (17%), Positives = 65/227 (28%), Gaps = 49/227 (21%)
Query: 105 QVVVDVGHRIELHCRVSPKRLSSAKA------WLKDG------LVLRRNSDEVLVLDRVQ 152
V V G + + C S S + W +DG V+ N+ + V Q
Sbjct: 9 SVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQ 68
Query: 153 REDAGMYQCHIEDGKYHMLSSGE-----LIIHQVDESDRYRSYQCRGVNKLTGASLLSVN 207
G++ +L + L I D SY R
Sbjct: 69 -------------GRFRLLGDVQKKNCSLSIGDARMEDT-GSYFFRVERG---------R 105
Query: 208 RGRLSLTENKRLLSAAKMFEKHRIL---NVKKDESVILPCS----AQGNPLPTIKWYKQD 260
+ S +NK L + EK I ++ L CS + P T W
Sbjct: 106 DVKYSYQQNKLNLEVTALIEKPDIHFLEPLESGRPTRLSCSLPGSCEAGPPLTFSWTGNA 165
Query: 261 SPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQ 307
+ + + S L+++ E C Q + +Q
Sbjct: 166 LSPLDPETTR--SSELTLTPRPEDHGTNLTCQMKRQGAQVTTERTVQ 210
Score = 39.0 bits (90), Expect = 0.001
Identities = 27/187 (14%), Positives = 46/187 (24%), Gaps = 44/187 (23%)
Query: 20 QVVVDVGHRIELHCRVSPKRLSSAKA------WLKDG------LVLRRNSDEV------- 60
V V G + + C S S + W +DG V+ N+ +
Sbjct: 9 SVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQ 68
Query: 61 ---------------LVLDRVQREDAGMYQCHVSADDDS----AQMSAQVILGGELVEIA 101
L + + ED G Y V D Q + + + +
Sbjct: 69 GRFRLLGDVQKKNCSLSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPD 128
Query: 102 SSNQVVVDVGHRIELHCRVSPKRLSSAKA---WLKDGLVL---RRNSDEVLVLDRVQRED 155
++ G L C + + W + L L L +
Sbjct: 129 IHFLEPLESGRPTRLSCSLPGSCEAGPPLTFSWTGNALSPLDPETTRSSELTLTPRPEDH 188
Query: 156 AGMYQCH 162
C
Sbjct: 189 GTNLTCQ 195
>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural
cytotoxicity receptor, NK cell receptor, immunoglobulin
fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4
Length = 242
Score = 46.8 bits (111), Expect = 3e-06
Identities = 27/170 (15%), Positives = 51/170 (30%), Gaps = 23/170 (13%)
Query: 8 KSSLSIEMSPSGQVVVDVGHRIELHCRVSPK-------RLSSAKAWLKDGLVLRRNSDEV 60
K + E +V ++ + C+ + S A + R N +
Sbjct: 7 KPFIWAEPHF----MVPKEKQVTICCQGNYGAVEYQLHFEGSLFAVDRPKPPERINKVK- 61
Query: 61 LVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGELV----EIASSNQVVVDVGHRIEL 116
+ + AG Y C + ++ S + L + ++ V G ++
Sbjct: 62 FYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGEKVTF 121
Query: 117 HCRVSPKRLSSAKAWLKDGLVL-----RRNSDEVLVLDRVQREDAGMYQC 161
+CR +S LK+G L V G Y+C
Sbjct: 122 YCR--LDTATSMFLLLKEGRSSHVQRGYGKVQAEFPLGPVTTAHRGTYRC 169
Score = 39.9 bits (93), Expect = 7e-04
Identities = 26/197 (13%), Positives = 50/197 (25%), Gaps = 46/197 (23%)
Query: 107 VVDVGHRIELHCRVSPK-------RLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMY 159
+V ++ + C+ + S A + R N + + + AG Y
Sbjct: 17 MVPKEKQVTICCQGNYGAVEYQLHFEGSLFAVDRPKPPERINKVK-FYIPDMNSRMAGQY 75
Query: 160 QCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRL 219
C G+ S L + V ++ LSV+ G
Sbjct: 76 SCIYRVGELWSEPSNLLDLV---------------VTEMYDTPTLSVHPGP--------- 111
Query: 220 LSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSIS 279
V E V C K+ ++ + +
Sbjct: 112 -------------EVISGEKVTFYCRLDT-ATSMFLLLKEGRSSHVQRGYGKVQAEFPLG 157
Query: 280 HVEESDSGVWNCVANNS 296
V + G + C + +
Sbjct: 158 PVTTAHRGTYRCFGSYN 174
Score = 36.0 bits (83), Expect = 0.011
Identities = 21/142 (14%), Positives = 39/142 (27%), Gaps = 27/142 (19%)
Query: 234 VKKDESVILPCSAQGN-PLPTIKWYKQDSPVEESDRIQRIGSS---LSISHVEESDSGVW 289
V K++ V + C QGN + + + S + I + +G +
Sbjct: 18 VPKEKQVTICC--QGNYGAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQY 75
Query: 290 NCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVK 349
+C+ E + S L + + + LS H V
Sbjct: 76 SCIYRVGELWSE---------------PSNLLDLVVTEMYDTPTLSV------HPGPEVI 114
Query: 350 KDESVILPCSAQGNPLPTIKYR 371
E V C + +
Sbjct: 115 SGEKVTFYCRLDTATSMFLLLK 136
Score = 30.6 bits (69), Expect = 0.61
Identities = 17/77 (22%), Positives = 25/77 (32%), Gaps = 11/77 (14%)
Query: 8 KSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVL-----RRNSDEVLV 62
+LS+ P V G ++ +CR +S LK+G
Sbjct: 102 TPTLSVHPGP----EVISGEKVTFYCR--LDTATSMFLLLKEGRSSHVQRGYGKVQAEFP 155
Query: 63 LDRVQREDAGMYQCHVS 79
L V G Y+C S
Sbjct: 156 LGPVTTAHRGTYRCFGS 172
>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor,
immune system, IG domain, cytotoxicity, C2-type IG-like
domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 188
Score = 45.6 bits (108), Expect = 6e-06
Identities = 29/174 (16%), Positives = 56/174 (32%), Gaps = 31/174 (17%)
Query: 8 KSSLSIEMSPSGQVVVDVGHRIELHCRVSPK-------RLSSAKAWLKDGLVLRRNSDEV 60
K + E +V ++ + C+ + S A + R N +
Sbjct: 4 KPFIWAEPHF----MVPKEKQVTICCQGNYGAVEYQLHFEGSLFAVDRPKPPERINKVK- 58
Query: 61 LVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGELVEIASSNQV--------VVDVGH 112
+ + AG Y C + ++ S + +LV + V G
Sbjct: 59 FYIPDMNSRMAGQYSCIYRVGELWSEPSNLL----DLVVTEMYDTPTLSVHPGPEVISGE 114
Query: 113 RIELHCRVSPKRLSSAKAWLKDG--LVLRRNSDE---VLVLDRVQREDAGMYQC 161
++ +CR+ +S LK+G ++R + L V G Y+C
Sbjct: 115 KVTFYCRLDTA--TSMFLLLKEGRSSHVQRGYGKVQAEFPLGPVTTAHRGTYRC 166
Score = 35.6 bits (82), Expect = 0.014
Identities = 26/197 (13%), Positives = 50/197 (25%), Gaps = 46/197 (23%)
Query: 107 VVDVGHRIELHCRVSPK-------RLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMY 159
+V ++ + C+ + S A + R N + + + AG Y
Sbjct: 14 MVPKEKQVTICCQGNYGAVEYQLHFEGSLFAVDRPKPPERINKVK-FYIPDMNSRMAGQY 72
Query: 160 QCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRL 219
C G+ S L + V ++ LSV+ G
Sbjct: 73 SCIYRVGELWSEPSNLLDLV---------------VTEMYDTPTLSVHPGPE-------- 109
Query: 220 LSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSIS 279
V E V C K+ ++ + +
Sbjct: 110 --------------VISGEKVTFYCRLDTAT-SMFLLLKEGRSSHVQRGYGKVQAEFPLG 154
Query: 280 HVEESDSGVWNCVANNS 296
V + G + C + +
Sbjct: 155 PVTTAHRGTYRCFGSYN 171
Score = 34.4 bits (79), Expect = 0.030
Identities = 12/69 (17%), Positives = 24/69 (34%), Gaps = 6/69 (8%)
Query: 234 VKKDESVILPCSAQGN-PLPTIKWYKQDSPVEESDRIQRIGSS---LSISHVEESDSGVW 289
V K++ V + C QGN + + + S + I + +G +
Sbjct: 15 VPKEKQVTICC--QGNYGAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQY 72
Query: 290 NCVANNSEG 298
+C+ E
Sbjct: 73 SCIYRVGEL 81
Score = 29.8 bits (67), Expect = 0.89
Identities = 18/77 (23%), Positives = 30/77 (38%), Gaps = 11/77 (14%)
Query: 8 KSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDG--LVLRRNSDE---VLV 62
+LS+ P V G ++ +CR+ +S LK+G ++R +
Sbjct: 99 TPTLSVHPGP----EVISGEKVTFYCRLDTA--TSMFLLLKEGRSSHVQRGYGKVQAEFP 152
Query: 63 LDRVQREDAGMYQCHVS 79
L V G Y+C S
Sbjct: 153 LGPVTTAHRGTYRCFGS 169
>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG,
inhibitory receptor, disulfide, immune system; 1.70A
{Homo sapiens}
Length = 196
Score = 45.2 bits (107), Expect = 8e-06
Identities = 27/175 (15%), Positives = 59/175 (33%), Gaps = 28/175 (16%)
Query: 8 KSSLSIEMSPSGQVVVDVGHRIELHCRVSPK-------RLSSAKAWLKDGLVLRRNSDEV 60
K +L E V+ G+ + + C+ + + + S W + + +N
Sbjct: 5 KPTLWAEPGS----VISWGNSVTIWCQGTLEAREYRLDKEESPAPWDRQNPLEPKNKAR- 59
Query: 61 LVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGE----LVEIASSNQVVVDVGHRIEL 116
+ + + AG Y+C+ + +Q S + L +++ +V G + L
Sbjct: 60 FSIPSMTEDYAGRYRCYYRSPVGWSQPSDPLELVMTGAYSKPTLSALPSPLVTSGKSVTL 119
Query: 117 HCRVSPKRLSSAKAWLKDG---LVLRRNSDEV-------LVLDRVQREDAGMYQC 161
C+ + K+ +L S+ + V G Y+C
Sbjct: 120 LCQ--SRSPMDTFLLCKERAAHPLLCLRSEHGAQQHQAEFPMSPVTSVHGGTYRC 172
Score = 36.3 bits (84), Expect = 0.008
Identities = 14/69 (20%), Positives = 25/69 (36%), Gaps = 6/69 (8%)
Query: 234 VKKDESVILPCSAQGNPL-PTIKWYKQDSPVEESDRIQRIGSS---LSISHVEESDSGVW 289
+ SV + C QG + K++SP + + SI + E +G +
Sbjct: 16 ISWGNSVTIWC--QGTLEAREYRLDKEESPAPWDRQNPLEPKNKARFSIPSMTEDYAGRY 73
Query: 290 NCVANNSEG 298
C + G
Sbjct: 74 RCYYRSPVG 82
Score = 30.6 bits (69), Expect = 0.56
Identities = 26/193 (13%), Positives = 53/193 (27%), Gaps = 51/193 (26%)
Query: 107 VVDVGHRIELHCRVSPK-------RLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMY 159
V+ G+ + + C+ + + + S W + + +N + + + AG Y
Sbjct: 15 VISWGNSVTIWCQGTLEAREYRLDKEESPAPWDRQNPLEPKNKAR-FSIPSMTEDYAGRY 73
Query: 160 QCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRL 219
+C+ S L + + LS
Sbjct: 74 RCYYRSPVGWSQPSDPLELV---------------MTGAYSKPTLSALPSP--------- 109
Query: 220 LSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSS---- 275
V +SV L C ++ +P+ T K+ + G+
Sbjct: 110 -------------LVTSGKSVTLLCQSR-SPMDTFLLCKERAAHPLLCLRSEHGAQQHQA 155
Query: 276 -LSISHVEESDSG 287
+S V G
Sbjct: 156 EFPMSPVTSVHGG 168
Score = 29.8 bits (67), Expect = 1.1
Identities = 18/92 (19%), Positives = 29/92 (31%), Gaps = 16/92 (17%)
Query: 8 KSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDG---LVLRRNSDEV---- 60
K +LS SP +V G + L C+ + K+ +L S+
Sbjct: 100 KPTLSALPSP----LVTSGKSVTLLCQ--SRSPMDTFLLCKERAAHPLLCLRSEHGAQQH 153
Query: 61 ---LVLDRVQREDAGMYQCHVSADDDSAQMSA 89
+ V G Y+C S +S
Sbjct: 154 QAEFPMSPVTSVHGGTYRCFSSHGFSHYLLSH 185
>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform
1; immunoglobulin-like fold, immune system; 1.85A {Homo
sapiens}
Length = 196
Score = 44.1 bits (104), Expect = 2e-05
Identities = 25/174 (14%), Positives = 56/174 (32%), Gaps = 25/174 (14%)
Query: 8 KSSLSIEMSPSGQVVVDVGHRIELHCRVSPK-------RLSSAKAWLKDGLVLRRNSDEV 60
K++L E V+ G+ + + C+ + + + S + W + +N
Sbjct: 5 KATLWAEPGS----VISRGNSVTIRCQGTLEAQEYRLVKEGSPEPWDTQNPLEPKNKAR- 59
Query: 61 LVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGEL----VEIASSNQVVVDVGHRIEL 116
+ + AG Y+C+ + ++ S + L +++ VV G + L
Sbjct: 60 FSIPSMTEHHAGRYRCYYYSPAGWSEPSDPLELVVTGFYNKPTLSALPSPVVTSGENVTL 119
Query: 117 HCRVSP--------KRLSSAKAWLKDGLVLRRNSDEV-LVLDRVQREDAGMYQC 161
C + +W D + + + V M +C
Sbjct: 120 QCGSRLRFDRFILTEEGDHKLSWTLDSQLTPSGQFQALFPVGPVTPSHRWMLRC 173
Score = 34.5 bits (79), Expect = 0.030
Identities = 25/141 (17%), Positives = 41/141 (29%), Gaps = 25/141 (17%)
Query: 234 VKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSS---LSISHVEESDSGVWN 290
+ + SV + C + K+ SP + + SI + E +G +
Sbjct: 16 ISRGNSVTIRCQGT-LEAQEYRLVKEGSPEPWDTQNPLEPKNKARFSIPSMTEHHAGRYR 74
Query: 291 CVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKK 350
C + G + S L + NK LSA V
Sbjct: 75 CYYYSPAGWSE---------------PSDPLELVVTGFYNKPTLSA------LPSPVVTS 113
Query: 351 DESVILPCSAQGNPLPTIKYR 371
E+V L C ++ I
Sbjct: 114 GENVTLQCGSRLRFDRFILTE 134
Score = 29.1 bits (65), Expect = 2.0
Identities = 23/203 (11%), Positives = 51/203 (25%), Gaps = 52/203 (25%)
Query: 107 VVDVGHRIELHCRVSPK-------RLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMY 159
V+ G+ + + C+ + + + S + W + +N + + AG Y
Sbjct: 15 VISRGNSVTIRCQGTLEAQEYRLVKEGSPEPWDTQNPLEPKNKAR-FSIPSMTEHHAGRY 73
Query: 160 QCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRL 219
+C+ S L + ++ LS
Sbjct: 74 RCYYYSPAGWSEPSDPLELVVTGFYNK---------------PTLSALPSP--------- 109
Query: 220 LSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSS---- 275
V E+V L C ++ ++ ++ S
Sbjct: 110 -------------VVTSGENVTLQCGSRLRF-DRFILTEEGDHKLSWTLDSQLTPSGQFQ 155
Query: 276 --LSISHVEESDSGVWNCVANNS 296
+ V S + C +
Sbjct: 156 ALFPVGPVTPSHRWMLRCYGSRR 178
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein
binding; HET: NAG NDG; 2.40A {Homo sapiens}
Length = 590
Score = 45.0 bits (105), Expect = 3e-05
Identities = 9/71 (12%), Positives = 26/71 (36%), Gaps = 2/71 (2%)
Query: 224 KMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGS-SLSISHVE 282
+ +++ + L C + + T W +++ + + + + L I ++
Sbjct: 502 PDKAPLQKVSLAPNSRYYLSCPME-SRHATYSWRHKENVEQSCEPGHQSPNCILFIENLT 560
Query: 283 ESDSGVWNCVA 293
G + C A
Sbjct: 561 AQQYGHYFCEA 571
Score = 37.7 bits (86), Expect = 0.005
Identities = 14/83 (16%), Positives = 27/83 (32%), Gaps = 15/83 (18%)
Query: 105 QVVVDVGHRIELHCRVSPKRLSSAKA---WLKDGLVLRRNS------DEVLVLDRVQRED 155
+V + R L C + S A W V + + +L ++ + +
Sbjct: 509 KVSLAPNSRYYLSCP-----MESRHATYSWRHKENVEQSCEPGHQSPNCILFIENLTAQQ 563
Query: 156 AGMYQCH-IEDGKYHMLSSGELI 177
G Y C E + +L+
Sbjct: 564 YGHYFCEAQEGSYFREAQHWQLL 586
Score = 35.8 bits (81), Expect = 0.020
Identities = 12/67 (17%), Positives = 22/67 (32%), Gaps = 14/67 (20%)
Query: 20 QVVVDVGHRIELHCRVSPKRLSSAKA---WLKDGLVLRRNS------DEVLVLDRVQRED 70
+V + R L C + S A W V + + +L ++ + +
Sbjct: 509 KVSLAPNSRYYLSCP-----MESRHATYSWRHKENVEQSCEPGHQSPNCILFIENLTAQQ 563
Query: 71 AGMYQCH 77
G Y C
Sbjct: 564 YGHYFCE 570
>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast
MYBP-C, C-protein, skeletal muscle fast isoform,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 42.1 bits (98), Expect = 3e-05
Identities = 17/90 (18%), Positives = 29/90 (32%), Gaps = 16/90 (17%)
Query: 227 EKHRILNVKKDESVILPCSAQGNPL---PTIKWYK---QDSPVEESDRIQ---------- 270
+K ++V+ + ++ G L PTIKW+K + + R
Sbjct: 17 KKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASN 76
Query: 271 RIGSSLSISHVEESDSGVWNCVANNSEGQD 300
L I V D G + + D
Sbjct: 77 VYTVELHIGKVVLGDRGYYRLEVKAKDTCD 106
Score = 30.2 bits (67), Expect = 0.40
Identities = 19/93 (20%), Positives = 30/93 (32%), Gaps = 22/93 (23%)
Query: 21 VVVDVGHRIELHCRVSPKRLSSAK--AWLKDG-----------LVLRRNSDEV------- 60
V V+ G + +V+ K L W K + + +
Sbjct: 22 VSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASNVYTVE 81
Query: 61 LVLDRVQREDAGMYQCHVSADD--DSAQMSAQV 91
L + +V D G Y+ V A D DS + V
Sbjct: 82 LHIGKVVLGDRGYYRLEVKAKDTCDSCGFNIDV 114
>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion;
2.40A {Homo sapiens}
Length = 145
Score = 42.5 bits (99), Expect = 3e-05
Identities = 17/84 (20%), Positives = 31/84 (36%), Gaps = 13/84 (15%)
Query: 233 NVKKDESVILPCSAQGNPLPTIKWYKQDS--------PVEESDRIQRIGS-----SLSIS 279
V +V+L C + + +++W +RIQ + S S+SIS
Sbjct: 49 TVVAGGTVVLKCQVKDHEDSSLQWSNPAQQTLYFGEKRALRDNRIQLVTSTPHELSISIS 108
Query: 280 HVEESDSGVWNCVANNSEGQDKMQ 303
+V +D G + C +
Sbjct: 109 NVALADEGEYTCSIFTMPVRTAKS 132
Score = 35.2 bits (80), Expect = 0.012
Identities = 14/97 (14%), Positives = 28/97 (28%), Gaps = 22/97 (22%)
Query: 15 MSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGL-----------------VLRRNS 57
+ V G + L C+V S+ W ++
Sbjct: 42 QPWTSDETVVAGGTVVLKCQVKD-HEDSSLQWSNPAQQTLYFGEKRALRDNRIQLVTSTP 100
Query: 58 DEV-LVLDRVQREDAGMYQCHVSADDDSAQMSAQVIL 93
E+ + + V D G Y C + +A+ ++
Sbjct: 101 HELSISISNVALADEGEYTCSIFTM---PVRTAKSLV 134
Score = 33.6 bits (76), Expect = 0.033
Identities = 20/103 (19%), Positives = 31/103 (30%), Gaps = 21/103 (20%)
Query: 79 SADDDSAQMSAQVILGGELVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGL-- 136
DDD M+ + + S VV G + L C+V S+ W
Sbjct: 23 GTDDDDKAMADINLSQDDSQPWTSDETVVA--GGTVVLKCQVKD-HEDSSLQWSNPAQQT 79
Query: 137 ---------------VLRRNSDEV-LVLDRVQREDAGMYQCHI 163
++ E+ + + V D G Y C I
Sbjct: 80 LYFGEKRALRDNRIQLVTSTPHELSISISNVALADEGEYTCSI 122
>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor,
adhesion, structural genomics, NEW YORK STR genomics
research consortium, nysgrc; 1.70A {Homo sapiens} PDB:
3rq3_A 3udw_A* 3ucr_A
Length = 117
Score = 41.8 bits (98), Expect = 4e-05
Identities = 15/84 (17%), Positives = 30/84 (35%), Gaps = 17/84 (20%)
Query: 232 LNVKKDESVILPCSAQGNPLP--TIKWYKQDSPV-------------EESDRIQRIGS-S 275
++ +K S+IL C + W +QD + DR+
Sbjct: 13 ISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAPGPGLG 72
Query: 276 LSISHVEESDSGVWNC-VANNSEG 298
L++ + +D+G + C +G
Sbjct: 73 LTLQSLTVNDTGEYFCIYHTYPDG 96
Score = 35.7 bits (82), Expect = 0.005
Identities = 14/89 (15%), Positives = 25/89 (28%), Gaps = 20/89 (22%)
Query: 11 LSIEMSPSGQVVVDVGHRIELHCRVS-PKRLSSAKAWLKDGLVL---------------- 53
++ + +G + + G I L C +S + W + +L
Sbjct: 3 MTGTIETTGNISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFK 62
Query: 54 ---RRNSDEVLVLDRVQREDAGMYQCHVS 79
L L + D G Y C
Sbjct: 63 DRVAPGPGLGLTLQSLTVNDTGEYFCIYH 91
Score = 34.5 bits (79), Expect = 0.012
Identities = 14/85 (16%), Positives = 23/85 (27%), Gaps = 20/85 (23%)
Query: 99 EIASSNQVVVDVGHRIELHCRVS-PKRLSSAKAWLKDGLVL------------------- 138
I ++ + + G I L C +S + W + +L
Sbjct: 6 TIETTGNISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRV 65
Query: 139 RRNSDEVLVLDRVQREDAGMYQCHI 163
L L + D G Y C
Sbjct: 66 APGPGLGLTLQSLTVNDTGEYFCIY 90
>2eys_A NKT15; natural killer T cell receptor, immune system; 2.21A {Homo
sapiens} PDB: 2eyr_A 2eyt_A 3huj_E* 3tyf_A 3tzv_A*
3sdx_E* 2po6_C* 2cde_A 3to4_C*
Length = 210
Score = 43.1 bits (101), Expect = 4e-05
Identities = 20/94 (21%), Positives = 35/94 (37%), Gaps = 20/94 (21%)
Query: 232 LNVKKDESVILPCSAQGNPLPTIKWYKQD--------------SPVEESDRIQ------R 271
L + + ++ L C+ +P ++WYKQD + + R
Sbjct: 13 LIILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADT 72
Query: 272 IGSSLSISHVEESDSGVWNCVANNSEGQDKMQLF 305
SSL I+ + SDS + CV ++ F
Sbjct: 73 KQSSLHITASQLSDSASYICVVSDRGSTLGRLYF 106
>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon,
CD3-delta, UCHT1-SCFV, immunoglobulin fold,
antibody-antigen complex; 1.90A {Homo sapiens} SCOP:
b.1.1.4
Length = 105
Score = 40.9 bits (95), Expect = 6e-05
Identities = 17/67 (25%), Positives = 25/67 (37%), Gaps = 6/67 (8%)
Query: 239 SVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI---GSSLSISHVEE-SDSGVWNCVAN 294
+VIL C P I W D + + + I LS+ E SG + C
Sbjct: 23 TVILTCPQ--YPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPR 80
Query: 295 NSEGQDK 301
S+ +D
Sbjct: 81 GSKPEDA 87
Score = 29.7 bits (66), Expect = 0.54
Identities = 16/84 (19%), Positives = 26/84 (30%), Gaps = 13/84 (15%)
Query: 94 GGELVEIASSNQVVVDV-GHRIELHCRVSPKRLSSAKAWLKDG--------LVLRRNSDE 144
G E + + V + G + L C P S W + + ++
Sbjct: 3 GNEEMGGITQTPYKVSISGTTVILTCPQYPG---SEILWQHNDKNIGGDEDDKNIGSDED 59
Query: 145 VLVLDRVQR-EDAGMYQCHIEDGK 167
L L E +G Y C+ K
Sbjct: 60 HLSLKEFSELEQSGYYVCYPRGSK 83
Score = 27.4 bits (60), Expect = 2.7
Identities = 12/60 (20%), Positives = 18/60 (30%), Gaps = 12/60 (20%)
Query: 26 GHRIELHCRVSPKRLSSAKAWLKDG--------LVLRRNSDEVLVLDRVQR-EDAGMYQC 76
G + L C P S W + + ++ L L E +G Y C
Sbjct: 21 GTTVILTCPQYPG---SEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVC 77
>3noi_A Natural cytotoxicity triggering receptor 3; immune system, innate
immunity, immunoglobulin-like I2 type natural killer
cell activation; HET: 1PG; 1.84A {Homo sapiens} PDB:
3pv6_B*
Length = 120
Score = 41.1 bits (96), Expect = 7e-05
Identities = 13/81 (16%), Positives = 26/81 (32%), Gaps = 22/81 (27%)
Query: 238 ESVILPC----SAQGNPLPTIKWYKQD------------------SPVEESDRIQRIGSS 275
S LPC S + ++ W++ + +P+ S + +
Sbjct: 23 SSAFLPCSFNASQGRLAIGSVTWFRDEVVPGKEVRNGTPEFRGRLAPLASSRFLHDHQAE 82
Query: 276 LSISHVEESDSGVWNCVANNS 296
L I V D+ ++ C
Sbjct: 83 LHIRDVRGHDASIYVCRVEVL 103
Score = 29.1 bits (65), Expect = 0.93
Identities = 14/97 (14%), Positives = 28/97 (28%), Gaps = 26/97 (26%)
Query: 96 ELVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLK-------DGLVLRRNSDEV--- 145
+ ++ ++ G L C + + A + G +R + E
Sbjct: 7 GALWVSQPPEIRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEVVPGKEVRNGTPEFRGR 66
Query: 146 ----------------LVLDRVQREDAGMYQCHIEDG 166
L + V+ DA +Y C +E
Sbjct: 67 LAPLASSRFLHDHQAELHIRDVRGHDASIYVCRVEVL 103
Score = 28.4 bits (63), Expect = 1.6
Identities = 14/87 (16%), Positives = 24/87 (27%), Gaps = 26/87 (29%)
Query: 20 QVVVDVGHRIELHCRVSPKRLSSAKAWLK-------DGLVLRRNSDEV------------ 60
++ G L C + + A + G +R + E
Sbjct: 16 EIRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEVVPGKEVRNGTPEFRGRLAPLASSRF 75
Query: 61 -------LVLDRVQREDAGMYQCHVSA 80
L + V+ DA +Y C V
Sbjct: 76 LHDHQAELHIRDVRGHDASIYVCRVEV 102
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI
domain, IG-like domain, extracellular receptor,
neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4
b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Length = 663
Score = 43.6 bits (101), Expect = 7e-05
Identities = 18/86 (20%), Positives = 36/86 (41%), Gaps = 4/86 (4%)
Query: 226 FEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDSPVE--ESDRIQRIGSSLSISHVEE 283
+R K + L CS + N L + W Q+ ++ +L I ++ E
Sbjct: 537 KGSYRQHFFKHGGTAELKCSQKSN-LARVFWKFQNGVLKAESPKYGLMGRKNLLIFNLSE 595
Query: 284 SDSGVWNCVA-NNSEGQDKMQLFIQY 308
DSGV+ C++ + + Q+ ++
Sbjct: 596 GDSGVYQCLSEERVKNKTVFQVVAKH 621
Score = 39.4 bits (90), Expect = 0.002
Identities = 24/116 (20%), Positives = 41/116 (35%), Gaps = 15/116 (12%)
Query: 27 HRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDE-------VLVLDRVQREDAGMYQCH-- 77
EL C W VL+ S + L++ + D+G+YQC
Sbjct: 549 GTAELKCSQKSNLARVF--WKFQNGVLKAESPKYGLMGRKNLLIFNLSEGDSGVYQCLSE 606
Query: 78 -VSADDDSAQMSAQVILGGELVE---IASSNQVVVDVGHRIELHCRVSPKRLSSAK 129
+ Q+ A+ +L ++V +A + VV G RI V+ +
Sbjct: 607 ERVKNKTVFQVVAKHVLEVKVVPKPVVAPTLSVVQTEGSRIATKVLVASTKHHHHH 662
Score = 38.2 bits (87), Expect = 0.004
Identities = 15/69 (21%), Positives = 23/69 (33%), Gaps = 10/69 (14%)
Query: 112 HRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDE-------VLVLDRVQREDAGMYQCH-I 163
EL C W VL+ S + L++ + D+G+YQC
Sbjct: 549 GTAELKCSQKSNLARVF--WKFQNGVLKAESPKYGLMGRKNLLIFNLSEGDSGVYQCLSE 606
Query: 164 EDGKYHMLS 172
E K +
Sbjct: 607 ERVKNKTVF 615
>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell,
HLA, major histocompatibility complex class I (MHC class
I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 257
Score = 42.7 bits (100), Expect = 8e-05
Identities = 28/179 (15%), Positives = 51/179 (28%), Gaps = 33/179 (18%)
Query: 8 KSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLV----------LRRNS 57
K SL P +V + L C + ++G S
Sbjct: 7 KPSLLAHPGP----LVKSEETVILQCWSDVR--FQHFLLHREGKFKDTLHLIGEHHDGVS 60
Query: 58 DEVLVLDRVQREDAGMYQCHVSADDDSAQMSA-------QVILGGELVEIASSNQVVVDV 110
+ + ++ AG Y+C+ S Q+SA + E +++ V
Sbjct: 61 KANFSIGPMMQDLAGTYRCYGSVTHSPYQLSAPSDPLDIVITGLYEKPSLSAQPGPTVLA 120
Query: 111 GHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDR--------VQREDAGMYQC 161
G + L C S + ++G R ++ G Y+C
Sbjct: 121 GESVTLSC--SSRSSYDMYHLSREGEAHERRFSAGPKVNGTFQADFPLGPATHGGTYRC 177
Score = 33.0 bits (75), Expect = 0.10
Identities = 26/149 (17%), Positives = 42/149 (28%), Gaps = 23/149 (15%)
Query: 4 FIQVKSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVL 63
+ K SLS + P V G + L C S + ++G R +
Sbjct: 103 GLYEKPSLSAQPGP----TVLAGESVTLSC--SSRSSYDMYHLSREGEAHERRFSAGPKV 156
Query: 64 DR--------VQREDAGMYQCHVSADDDSAQMSAQ------VILGGELVEIASSNQVVVD 109
+ G Y+C S D + S + G S + +
Sbjct: 157 NGTFQADFPLGPATHGGTYRCFGSFRDSPYEWSNSSDPLLVSVTGNPSNSWPSPTEPSSE 216
Query: 110 VGHRIELHCRVSPKRLSSAKA---WLKDG 135
G+ LH K +S + G
Sbjct: 217 TGNPRHLHAAAEQKLISEEDLNLDLVPRG 245
Score = 29.2 bits (65), Expect = 1.8
Identities = 10/77 (12%), Positives = 21/77 (27%), Gaps = 12/77 (15%)
Query: 107 VVDVGHRIELHCRVSPKRLSSAKAWLKDGLV----------LRRNSDEVLVLDRVQREDA 156
+V + L C + ++G S + + ++ A
Sbjct: 17 LVKSEETVILQCWSDVR--FQHFLLHREGKFKDTLHLIGEHHDGVSKANFSIGPMMQDLA 74
Query: 157 GMYQCHIEDGKYHMLSS 173
G Y+C+ S
Sbjct: 75 GTYRCYGSVTHSPYQLS 91
>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell
membrane, disulfide bond, glycoprotein, immunoglobulin
domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC;
3.60A {Homo sapiens}
Length = 589
Score = 43.1 bits (101), Expect = 1e-04
Identities = 11/90 (12%), Positives = 21/90 (23%), Gaps = 13/90 (14%)
Query: 16 SPSGQVVVDVGHRIELHCRVSPKRLSSAKA------WLKDGLVLRR------NSDEVLVL 63
SP VV + C + K + W + + + N V
Sbjct: 9 SPESPVVQ-LHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIINRTASSVT 67
Query: 64 DRVQREDAGMYQCHVSADDDSAQMSAQVIL 93
C++ Q + +
Sbjct: 68 FTDIASLNIQLTCNILTFGQLEQNVYGITI 97
Score = 40.0 bits (93), Expect = 0.001
Identities = 11/84 (13%), Positives = 25/84 (29%), Gaps = 10/84 (11%)
Query: 234 VKKDESVILPCSAQ-------GNPLPTIKWYKQDSPVEESDR--IQRIGSSLSISHVEES 284
V+ + C + I W + + I R SS++ + +
Sbjct: 15 VQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIINRTASSVTFTDIASL 74
Query: 285 DSGVW-NCVANNSEGQDKMQLFIQ 307
+ + N + Q+ + I
Sbjct: 75 NIQLTCNILTFGQLEQNVYGITII 98
Score = 34.2 bits (78), Expect = 0.064
Identities = 9/71 (12%), Positives = 16/71 (22%), Gaps = 12/71 (16%)
Query: 106 VVVDVGHRIELHCRVSPKRLSSAKA------WLKDGLVLRR------NSDEVLVLDRVQR 153
VV + C + K + W + + + N V
Sbjct: 13 PVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIINRTASSVTFTDIA 72
Query: 154 EDAGMYQCHIE 164
C+I
Sbjct: 73 SLNIQLTCNIL 83
>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin
fold, immune surveillance of cell stress PROT A/B,
MIC-A/B binding, epithelium; 3.04A {Homo sapiens}
Length = 259
Score = 41.7 bits (98), Expect = 2e-04
Identities = 31/181 (17%), Positives = 59/181 (32%), Gaps = 42/181 (23%)
Query: 146 LVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLS 205
++L + D+G+Y C D Y+ G V + + K GA ++
Sbjct: 81 MILRNLIENDSGVYYCATWDQNYYKKLFGSGTSLVVTDKQGSADDAKKDAAKKDGAQKVT 140
Query: 206 VNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGN-PLPTIKWYKQ----- 259
+ +S+ ++V L C + + I WYK+
Sbjct: 141 QAQSSVSMPV---------------------RKAVTLNCLYETSWWSYYIFWYKRLPSKE 179
Query: 260 ---------DSPVEESDR--IQRIGS----SLSISHVEESDSGVWNCVANNSEGQDKMQL 304
D +S R + + +L+IS ++ DS + C S + +
Sbjct: 180 MIFLIRQGSDEQNAKSGRYSVNFKKAAKSVALTISALQLEDSAKYFCALGESLTRADKLI 239
Query: 305 F 305
F
Sbjct: 240 F 240
Score = 36.7 bits (85), Expect = 0.007
Identities = 19/152 (12%), Positives = 45/152 (29%), Gaps = 32/152 (21%)
Query: 238 ESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGS----------------------- 274
S + C I WY + R+ S
Sbjct: 18 SSAEITCDLAEGSTGYIHWYLH-QEGKAPQRLLYYDSYTSSVVLESGISPGKYDTYGSTR 76
Query: 275 ---SLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVDEKNK 331
+ + ++ E+DSGV+ C + + G +++ + +
Sbjct: 77 KNLRMILRNLIENDSGVYYCATWDQNYY-----KKLFGSGTSLVVTDKQGSADDAKKDAA 131
Query: 332 RLLSAAKMFEKHRILNVKKDESVILPCSAQGN 363
+ A K+ + +++ ++V L C + +
Sbjct: 132 KKDGAQKVTQAQSSVSMPVRKAVTLNCLYETS 163
>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like
folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4
b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A
2dyp_D 2otp_A 3q2c_A
Length = 198
Score = 41.0 bits (96), Expect = 2e-04
Identities = 29/179 (16%), Positives = 49/179 (27%), Gaps = 34/179 (18%)
Query: 8 KSSLSIEMSPSGQVVVDVGHRIELHCRVSPK-------RLSSAKAWLKDGLVLRRNSDEV 60
K +L E P V+ G + L C+ + R W+ +
Sbjct: 5 KPTLWAE--PGS--VITQGSPVTLRCQGGQETQEYRLYREKKTAPWITRIPQELVKKGQ- 59
Query: 61 LVLDRVQREDAGMYQC-------HVSADDDSAQMSAQVILGGELVEIASSNQVVVDVGHR 113
+ + E G Y+C S D ++ + S VV+ G
Sbjct: 60 FPIPSITWEHTGRYRCYYGSDTAGRSESSDPLELVVTGAYIKPTLSAQPSP--VVNSGGN 117
Query: 114 IELHCRVSPKRLSSAKAWLKDG---LVLRRNSDE--------VLVLDRVQREDAGMYQC 161
+ L C + K+G NS + + V Y+C
Sbjct: 118 VTLQCDS--QVAFDGFILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRC 174
>3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin
domain, microsome, protein disulfide isomerase,
thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo
sapiens}
Length = 401
Score = 41.5 bits (96), Expect = 3e-04
Identities = 26/154 (16%), Positives = 41/154 (26%), Gaps = 15/154 (9%)
Query: 45 AWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGG--ELVEIAS 102
AW D + L RVQ G Y + Q++ ++ + ++ + +
Sbjct: 240 AWDDDEPWGPWTGNGTFWLPRVQPFQEGTYLATIHLPYLQGQVTLELAVYKPPKVSLMPA 299
Query: 103 SNQVVVDVGHRIELHCRVS---PKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMY 159
+ EL C VS P + W G R+
Sbjct: 300 TLARAAPGEAPPELLCLVSHFYPSGGLEVE-WELRGGPGGRSQKAEGQRWLSALRHHS-- 356
Query: 160 QCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCR 193
DG + L V Y CR
Sbjct: 357 -----DGSVSLSGH--LQPPPVTTEQHGARYACR 383
>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells,
immunological receptors, immunoglobulin fold; 1.70A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D
2dli_A 2dl2_A 3h8n_A
Length = 201
Score = 40.7 bits (95), Expect = 3e-04
Identities = 29/177 (16%), Positives = 49/177 (27%), Gaps = 29/177 (16%)
Query: 8 KSSLSIEMSPSGQVVVDVGHRIELHCRVSP--------KRLSSAKAWLKDGLVLRRNSDE 59
K SL P +V + L C + G S
Sbjct: 8 KPSLLAHPGP----LVKSEETVILQCWSDVMFEHFLLHREGMFNDTLRLIGEHHDGVSKA 63
Query: 60 VLVLDRVQREDAGMYQCHVSADDDSAQMSA-------QVILGGELVEIASSNQVVVDVGH 112
+ R+ ++ AG Y+C+ S Q+SA +I E +++ V G
Sbjct: 64 NFSISRMTQDLAGTYRCYGSVTHSPYQVSAPSDPLDIVIIGLYEKPSLSAQPGPTVLAGE 123
Query: 113 RIELHCRVSPKRLSSAKAWLKDG--------LVLRRNSDEVLVLDRVQREDAGMYQC 161
+ L C + ++G + N G Y+C
Sbjct: 124 NVTLSCS--SRSSYDMYHLSREGEAHERRLPAGPKVNGTFQADFPLGPATHGGTYRC 178
Score = 28.7 bits (64), Expect = 2.2
Identities = 11/75 (14%), Positives = 20/75 (26%), Gaps = 8/75 (10%)
Query: 107 VVDVGHRIELHCRVSP--------KRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGM 158
+V + L C + G S + R+ ++ AG
Sbjct: 18 LVKSEETVILQCWSDVMFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGT 77
Query: 159 YQCHIEDGKYHMLSS 173
Y+C+ S
Sbjct: 78 YRCYGSVTHSPYQVS 92
Score = 27.6 bits (61), Expect = 5.3
Identities = 13/70 (18%), Positives = 28/70 (40%), Gaps = 6/70 (8%)
Query: 234 VKKDESVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRI-----GSSLSISHVEESDSGV 288
VK +E+VIL C + +++ + I ++ SIS + + +G
Sbjct: 19 VKSEETVILQCWSD-VMFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGT 77
Query: 289 WNCVANNSEG 298
+ C + +
Sbjct: 78 YRCYGSVTHS 87
>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 112
Score = 39.2 bits (91), Expect = 3e-04
Identities = 22/99 (22%), Positives = 27/99 (27%), Gaps = 16/99 (16%)
Query: 106 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIE- 164
V V G +S W +G L+ N E V R IE
Sbjct: 18 VQVYDGEDAVFSLDLSTI---IQGTWFLNGEELKSNEPEGQVEPGALR-------YRIEQ 67
Query: 165 DGKYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASL 203
G H LI+H V D A+L
Sbjct: 68 KGLQH-----RLILHAVKHQDSGALVGFSCPGVQDSAAL 101
Score = 34.6 bits (79), Expect = 0.010
Identities = 18/90 (20%), Positives = 27/90 (30%), Gaps = 23/90 (25%)
Query: 21 VVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEV-------------------L 61
V V G +S W +G L+ N E L
Sbjct: 18 VQVYDGEDAVFSLDLSTI---IQGTWFLNGEELKSNEPEGQVEPGALRYRIEQKGLQHRL 74
Query: 62 VLDRVQREDAGMYQCHVSAD-DDSAQMSAQ 90
+L V+ +D+G DSA ++ Q
Sbjct: 75 ILHAVKHQDSGALVGFSCPGVQDSAALTIQ 104
>1h5b_A Murine T cell receptor (TCR) valpha domain; immune response,
immunoglobulin fold; 1.85A {Mus musculus} SCOP: b.1.1.1
PDB: 1h5b_C 1h5b_B
Length = 113
Score = 39.2 bits (92), Expect = 3e-04
Identities = 18/92 (19%), Positives = 37/92 (40%), Gaps = 20/92 (21%)
Query: 230 RILNVKKDESVILPCSAQGNPLPTIKWYKQD------------SPVEESDRI-QRIG--- 273
L++ + L C+ + +++W++Q+ S +E+ R+
Sbjct: 9 SALSLHEGTDSALRCNFTTT-MRSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSER 67
Query: 274 ---SSLSISHVEESDSGVWNCVANNSEGQDKM 302
S+L I + DSG + C A S G ++
Sbjct: 68 ARYSTLHIRDAQLEDSGTYFCAAEASSGSWQL 99
>2bnu_A TCR alpha chain, T-cell receptor alpha chain C region; superagonist
peptide T-cell vaccines, transmembrane, immunoglobulin
domain; 1.40A {Homo sapiens} PDB: 2bnq_D 2bnr_D 2f54_D
2pyf_A* 2pye_D* 2f53_D 2p5e_D* 2p5w_D* 3mv7_D 3mv8_D
3mv9_D 3utt_D 2cdg_A
Length = 203
Score = 40.0 bits (93), Expect = 4e-04
Identities = 16/88 (18%), Positives = 33/88 (37%), Gaps = 20/88 (22%)
Query: 238 ESVILPCSAQGNPLPTIKWYKQD---SPV--------EESDRIQRIG---------SSLS 277
E+++L CS + + ++W++QD + R+ S+L
Sbjct: 16 ENLVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSSGRSTLY 75
Query: 278 ISHVEESDSGVWNCVANNSEGQDKMQLF 305
I+ + DS + C + G + F
Sbjct: 76 IAASQPGDSATYLCAVRPTSGGSYIPTF 103
>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system;
1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E
3csp_A 1py9_A
Length = 139
Score = 38.8 bits (90), Expect = 5e-04
Identities = 19/101 (18%), Positives = 26/101 (25%), Gaps = 31/101 (30%)
Query: 100 IASSNQVVVDVGHRIELHCRVSP-------------KRLSSAKAWLKDGLVLRRNSDEV- 145
I + + VG EL CR+SP S ++G
Sbjct: 10 IGPGHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEY 69
Query: 146 -----------------LVLDRVQREDAGMYQCHIEDGKYH 169
L + V+ D G Y C D Y
Sbjct: 70 RGRTELLKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQ 110
Score = 37.6 bits (87), Expect = 0.001
Identities = 17/102 (16%), Positives = 24/102 (23%), Gaps = 31/102 (30%)
Query: 16 SPSGQVVVDVGHRIELHCRVSP-------------KRLSSAKAWLKDGLVLRRNSDEV-- 60
P + VG EL CR+SP S ++G
Sbjct: 11 GPGHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYR 70
Query: 61 ----------------LVLDRVQREDAGMYQCHVSADDDSAQ 86
L + V+ D G Y C +
Sbjct: 71 GRTELLKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEE 112
Score = 32.6 bits (74), Expect = 0.073
Identities = 15/90 (16%), Positives = 26/90 (28%), Gaps = 27/90 (30%)
Query: 238 ESVILPCS---AQGNPLPTIKWYKQDSP-----------------VEESDRIQRIGS--- 274
+ LPC + + WY+ E R + +
Sbjct: 22 DEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIG 81
Query: 275 ----SLSISHVEESDSGVWNCVANNSEGQD 300
+L I +V SD G + C + Q+
Sbjct: 82 EGKVALRIQNVRFSDEGGYTCFFRDHSYQE 111
>3pv7_A B7-H6, IG-like domain-containing protein
DKFZP686O24166/DKFZP686I21167; NK cell receptor,
receptor-ligand complex, immune system; HET: NAG; 2.00A
{Homo sapiens} PDB: 3pv6_A*
Length = 248
Score = 40.0 bits (93), Expect = 5e-04
Identities = 37/224 (16%), Positives = 68/224 (30%), Gaps = 61/224 (27%)
Query: 11 LSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAK----AW-------------------- 46
L +EM G + + + + C + + + W
Sbjct: 3 LKVEMMAGGTQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDH 62
Query: 47 ---LKDGLVLRRNS----DEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVILGGELVE 99
+ G ++ D L L +Q E+AG Y+C V AQ G +E
Sbjct: 63 QEAFRPGAIVSPWRLKSGDASLRLPGIQLEEAGEYRCEVVVTPLKAQ-------GTVQLE 115
Query: 100 IASSNQV------VVDVGHRIELHCRVS---PKRLSSAKAWLKDGLVLRRNSDEVL-VLD 149
+ +S V + + C S P+ ++ W K + V+
Sbjct: 116 VVASPASRLLLDQVGMKENEDKYMCESSGFYPEAINI--TWEKQTQKFPHPIEISEDVIT 173
Query: 150 RVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCR 193
++ DG +++ S +L + D YQC
Sbjct: 174 GPTIKN--------MDGTFNVTSCLKLN---SSQEDPGTVYQCV 206
Score = 29.3 bits (65), Expect = 1.9
Identities = 8/90 (8%), Positives = 24/90 (26%), Gaps = 27/90 (30%)
Query: 238 ESVILPCSAQGNP-----LPTIKWYKQD-----------------SPVEESDRIQRIGS- 274
++V + C+ + I W+ + +
Sbjct: 19 DNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWRLK 78
Query: 275 ----SLSISHVEESDSGVWNCVANNSEGQD 300
SL + ++ ++G + C + +
Sbjct: 79 SGDASLRLPGIQLEEAGEYRCEVVVTPLKA 108
>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell immunoglobulin
mucin, signaling protein; 1.95A {Mus musculus} PDB:
3kaa_A*
Length = 109
Score = 38.0 bits (88), Expect = 6e-04
Identities = 19/80 (23%), Positives = 26/80 (32%), Gaps = 26/80 (32%)
Query: 238 ESVILPCS---AQGNPLPTIKWYKQDSPV-----------------EESDRIQRIGS--- 274
++ LPCS L + W K P ++S R Q G
Sbjct: 10 KNAYLPCSYTLPTSGTLVPMCWGKGFCPWSQCTNELLRTDERNVTYQKSSRYQLKGDLNK 69
Query: 275 ---SLSISHVEESDSGVWNC 291
SL I +V D G + C
Sbjct: 70 GDVSLIIKNVTLDDHGTYCC 89
Score = 34.5 bits (79), Expect = 0.011
Identities = 15/103 (14%), Positives = 28/103 (27%), Gaps = 30/103 (29%)
Query: 21 VVVDVGHRIELHCRVSPKRLSSAKA--WLKDGLVLRRNSDEV------------------ 60
V+VG L C + + W K + ++E+
Sbjct: 4 YKVEVGKNAYLPCSYTLPTSGTLVPMCWGKGFCPWSQCTNELLRTDERNVTYQKSSRYQL 63
Query: 61 ----------LVLDRVQREDAGMYQCHVSADDDSAQMSAQVIL 93
L++ V +D G Y C + ++ L
Sbjct: 64 KGDLNKGDVSLIIKNVTLDDHGTYCCRIQFPGLMNDKKLELKL 106
Score = 34.5 bits (79), Expect = 0.011
Identities = 15/91 (16%), Positives = 27/91 (29%), Gaps = 30/91 (32%)
Query: 104 NQVVVDVGHRIELHCRVSPKRLSSAKA--WLKDGLVLRRNSDEV---------------- 145
+ V+VG L C + + W K + ++E+
Sbjct: 2 DGYKVEVGKNAYLPCSYTLPTSGTLVPMCWGKGFCPWSQCTNELLRTDERNVTYQKSSRY 61
Query: 146 ------------LVLDRVQREDAGMYQCHIE 164
L++ V +D G Y C I+
Sbjct: 62 QLKGDLNKGDVSLIIKNVTLDDHGTYCCRIQ 92
>3gsn_A RA14 TCR alpha chain (TRAV24, TRAJ49); HLA, human cytomegalovirus,
PP65, T cell receptor (TCR), immune response, public
response; 2.80A {Homo sapiens}
Length = 199
Score = 39.5 bits (92), Expect = 6e-04
Identities = 14/79 (17%), Positives = 23/79 (29%), Gaps = 20/79 (25%)
Query: 238 ESVILPCSAQGNPLPTIKWYKQD--------------SPVEESDRIQ------RIGSSLS 277
+S CS + + WY+ + ++ RI S L
Sbjct: 16 DSTNFTCSFPSSNFYALHWYRWETAKSPEALFVMTLNGDEKKKGRISATLNTKEGYSYLY 75
Query: 278 ISHVEESDSGVWNCVANNS 296
I + DS + C N
Sbjct: 76 IKGSQPEDSATYLCARNTG 94
>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology,
IGSF, cell SU receptor signalling, glycosylation,
membrane protein; HET: NAG; 2.90A {Homo sapiens}
Length = 118
Score = 38.3 bits (89), Expect = 7e-04
Identities = 16/89 (17%), Positives = 28/89 (31%), Gaps = 28/89 (31%)
Query: 238 ESVILPCSAQGNPLPT-----IKWYKQDSP-------------VEESDRIQRIGS----- 274
+SV LPC Q + + W + ES R++ + +
Sbjct: 16 DSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAE 75
Query: 275 ----SLSISHVEESDSGVWNC-VANNSEG 298
SL + + D G + C +G
Sbjct: 76 LRNASLRMFGLRVEDEGNYTCLFVTFPQG 104
Score = 31.3 bits (71), Expect = 0.17
Identities = 13/100 (13%), Positives = 25/100 (25%), Gaps = 33/100 (33%)
Query: 11 LSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKA----WLKDGL------------VLR 54
+ ++ V +G + L C + + W + G
Sbjct: 2 VVVQAPTQ--VPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSY 59
Query: 55 RNSDEV---------------LVLDRVQREDAGMYQCHVS 79
S + L + ++ ED G Y C
Sbjct: 60 SESKRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFV 99
Score = 29.4 bits (66), Expect = 0.71
Identities = 15/97 (15%), Positives = 26/97 (26%), Gaps = 31/97 (31%)
Query: 98 VEIASSNQVVVDVGHRIELHCRVSPKRLSSAKA----WLKDGL------------VLRRN 141
V + + QV +G + L C + + W + G
Sbjct: 2 VVVQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSE 61
Query: 142 SDEV---------------LVLDRVQREDAGMYQCHI 163
S + L + ++ ED G Y C
Sbjct: 62 SKRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLF 98
>4ei6_A Valpha1 XV19 type II natural killer T cell recept variable domain,
human constant...; natural killer T cell receptor,
immune system; 1.60A {Mus musculus} PDB: 4ei5_C 4elk_A
4elm_E* 3qeu_A 1ao7_D 3qdj_D 3qdg_D 3qfj_D 1qsf_D
1qse_D* 3d39_D* 3d3v_D* 3h9s_D 3pwp_D 2gj6_D 3utp_D*
3uts_D 1qrn_D 3hg1_D 3rdt_A ...
Length = 208
Score = 39.6 bits (92), Expect = 7e-04
Identities = 18/93 (19%), Positives = 31/93 (33%), Gaps = 19/93 (20%)
Query: 232 LNVKKDESVILPCSAQGNPLPTIKWYKQD---SPV----------EESDRIQ------RI 272
L+V + L C++ WY+Q P ++ R +
Sbjct: 12 LSVPEGGMASLNCTSSDRNFQYFWWYRQHSGEGPKALMSIFSDGDKKEGRFTAHLNKASL 71
Query: 273 GSSLSISHVEESDSGVWNCVANNSEGQDKMQLF 305
SL I + SDS ++ C A+ + F
Sbjct: 72 HVSLHIRDSQPSDSALYFCAASEQNNYAQGLTF 104
>3r08_E T-cell surface glycoprotein CD3 epsilon chain; antibody, T-cell
receptor, signalling, immune SY; 4.10A {Cricetulus
migratorius}
Length = 82
Score = 37.0 bits (85), Expect = 0.001
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
Query: 26 GHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQR-EDAGMYQCHVSADDDS 84
G +EL C + W K+G L + D+ LVL ED+G Y C+ A + +
Sbjct: 14 GTSVELTCPLDSD---ENLKWEKNGQELPQKHDKHLVLQDFSEVEDSGYYVCYTPASNKN 70
Query: 85 AQM 87
+
Sbjct: 71 TYL 73
Score = 33.9 bits (77), Expect = 0.010
Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 6/74 (8%)
Query: 101 ASSNQVVVDV-GHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQR-EDAGM 158
A + + V + G +EL C + W K+G L + D+ LVL ED+G
Sbjct: 3 AENIEYKVSISGTSVELTCPLDSD---ENLKWEKNGQELPQKHDKHLVLQDFSEVEDSGY 59
Query: 159 YQCHIEDG-KYHML 171
Y C+ K L
Sbjct: 60 YVCYTPASNKNTYL 73
Score = 33.5 bits (76), Expect = 0.014
Identities = 15/66 (22%), Positives = 22/66 (33%), Gaps = 6/66 (9%)
Query: 239 SVILPCSAQGNPLPTIKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEG 298
SV L C + +KW K + + + S E DSG + C S
Sbjct: 16 SVELTCPLDSDE--NLKWEKNGQELPQKHDKHLVLQDFS----EVEDSGYYVCYTPASNK 69
Query: 299 QDKMQL 304
+ L
Sbjct: 70 NTYLYL 75
>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel,
immunoglobulin fold, IGV domain, TIM, immune system;
2.50A {Mus musculus}
Length = 116
Score = 37.6 bits (87), Expect = 0.001
Identities = 19/78 (24%), Positives = 28/78 (35%), Gaps = 24/78 (30%)
Query: 238 ESVILPCSAQGNP-LPTIKWYKQDSPV-----------------EESDRIQRIGS----- 274
V LPC+ + T W + P ++S R G
Sbjct: 13 HPVTLPCTYSTYRGITTTCWGRGQCPSSACQNTLIWTNGHRVTYQKSSRYNLKGHISEGD 72
Query: 275 -SLSISHVEESDSGVWNC 291
SL+I + ESDSG++ C
Sbjct: 73 VSLTIENSVESDSGLYCC 90
Score = 35.7 bits (82), Expect = 0.004
Identities = 18/93 (19%), Positives = 30/93 (32%), Gaps = 28/93 (30%)
Query: 100 IASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDG--------LVLRRNSDEV------ 145
+ S +V VGH + L C S R + W + ++ N V
Sbjct: 1 MDSYVEVKGVVGHPVTLPCTYSTYRGITTTCWGRGQCPSSACQNTLIWTNGHRVTYQKSS 60
Query: 146 --------------LVLDRVQREDAGMYQCHIE 164
L ++ D+G+Y C +E
Sbjct: 61 RYNLKGHISEGDVSLTIENSVESDSGLYCCRVE 93
Score = 35.7 bits (82), Expect = 0.005
Identities = 19/107 (17%), Positives = 29/107 (27%), Gaps = 28/107 (26%)
Query: 15 MSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDG--------LVLRRNSDEV------ 60
M +V VGH + L C S R + W + ++ N V
Sbjct: 1 MDSYVEVKGVVGHPVTLPCTYSTYRGITTTCWGRGQCPSSACQNTLIWTNGHRVTYQKSS 60
Query: 61 --------------LVLDRVQREDAGMYQCHVSADDDSAQMSAQVIL 93
L ++ D+G+Y C V L
Sbjct: 61 RYNLKGHISEGDVSLTIENSVESDSGLYCCRVEIPGWFNDQKVTFSL 107
>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal
regulatory protein alpha, immunoglobulin superfamily,
phosphoprotein; HET: NAG; 2.49A {Homo sapiens}
Length = 327
Score = 39.1 bits (91), Expect = 0.001
Identities = 53/324 (16%), Positives = 86/324 (26%), Gaps = 66/324 (20%)
Query: 17 PSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKD---GLVL-------------------- 53
P V V G LHC V+ W + L
Sbjct: 9 PDKSVSVAAGESAILHCTVTSLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSESTK 68
Query: 54 RRNSDEVLVLDRVQREDAGMYQC---HVSADDDSAQMSAQVILGGEL---VEIASSNQVV 107
R N D + + + DAG Y C + D + A L + S
Sbjct: 69 RENMDFSISISNITPADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSGPAAR 128
Query: 108 VDVGHRIELHCRVSPKRLSSAK-AWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHIEDG 166
H + C W K+G L SD +D V E
Sbjct: 129 ATPQHTVSFTCESHGFSPRDITLKWFKNGNEL---SDFQTNVDPVG-----------ESV 174
Query: 167 KYHMLSSGELIIHQVDESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMF 226
Y + S+ ++ + D + C + +++ L T N
Sbjct: 175 SYSIHSTAKV---VLTREDVHSQVICE-------VAHVTLQGDPLRGTANLSETIRVPPT 224
Query: 227 EKHRILNVKKDESVILPCSAQG-NPLP-TIKWYKQD---------SPVEESDRIQRIGSS 275
+ V+ + V + C + P + W + + E D S
Sbjct: 225 LEVTQQPVRAENQVNVTCQVRKFYPQRLQLTWLENGNVSRTETASTVTENKDGTYNWMSW 284
Query: 276 LSISHVEESDSGVWNCVANNSEGQ 299
L ++ D C + +GQ
Sbjct: 285 LLVNVSAHRDDVKLTCQVEH-DGQ 307
Score = 35.7 bits (82), Expect = 0.020
Identities = 22/90 (24%), Positives = 36/90 (40%), Gaps = 19/90 (21%)
Query: 232 LNVKKDESVILPCSAQGN-PLPTIKWYKQDSPVEESDRIQRIG----------------- 273
++V ES IL C+ P+ I+W++ P E Q+ G
Sbjct: 13 VSVAAGESAILHCTVTSLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSESTKRENM 72
Query: 274 -SSLSISHVEESDSGVWNCVANNSEGQDKM 302
S+SIS++ +D+G + CV D
Sbjct: 73 DFSISISNITPADAGTYYCVKFRKGSPDTE 102
>3tjh_C 42F3 alpha; IG MHC, antigen recognition, TCR-PMHC, membrane
receptor, IM system; 2.12A {Mus musculus} PDB: 3tpu_A
3tfk_C 1j8h_D* 1fyt_D* 3rev_A 1mwa_A* 1g6r_A* 1tcr_A*
2ckb_A 1zgl_M 3c5z_A 1i9e_A* 2oi9_B 2e7l_A 2icw_I 3e2h_B
3e3q_D
Length = 226
Score = 38.5 bits (89), Expect = 0.002
Identities = 17/93 (18%), Positives = 27/93 (29%), Gaps = 21/93 (22%)
Query: 232 LNVKKDESVILPCSAQGNPLPTIKWYKQD------------SPVEESDRIQRIG------ 273
+ V + S+ L C + P + WY Q S +
Sbjct: 19 VTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGLQMLLKYYSGDPVVQGVNGFEAEFSKS 78
Query: 274 ---SSLSISHVEESDSGVWNCVANNSEGQDKMQ 303
L + V SDS V+ C + K+
Sbjct: 79 DSSFHLRKASVHWSDSAVYFCAVSAKGTGSKLS 111
>1lp9_E T-cell receptor alpha chain; immunoregulatory complex, class I
MHC:TCR CO-crystal, immune; 2.00A {Mus musculus} SCOP:
b.1.1.1 b.1.1.2 PDB: 2j8u_E 2jcc_E 2uwe_E 1nfd_A*
Length = 194
Score = 38.1 bits (88), Expect = 0.002
Identities = 16/94 (17%), Positives = 28/94 (29%), Gaps = 20/94 (21%)
Query: 232 LNVKKDESVILPCSAQGNPLPTIKWYKQD--------------SPVEESDRIQRIG---- 273
+ + + V+L C+ Q P + WY Q + E
Sbjct: 11 VTLTEGLPVMLNCTYQSTYSPFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLHKSS 70
Query: 274 --SSLSISHVEESDSGVWNCVANNSEGQDKMQLF 305
L S + SDS ++ C + +F
Sbjct: 71 SSFHLQKSSAQLSDSALYYCALFLASSSFSKLVF 104
>3mbe_C I-AG7; T cell receptor, histocompatability antigen, MHC class II, I
immune system; HET: NAG; 2.89A {Mus musculus}
Length = 229
Score = 38.5 bits (89), Expect = 0.002
Identities = 16/89 (17%), Positives = 37/89 (41%), Gaps = 19/89 (21%)
Query: 232 LNVKKDESVILPCSAQGNPLPTIKWYKQD------------SPVEESDRI------QRIG 273
L++ + L C+ + +++W++Q+ +E+ R+ +
Sbjct: 11 LSLYEGADSGLRCNFSTT-MKSVQWFQQNHRGRLITLFYLAQGTKENGRLKSTFNSKERY 69
Query: 274 SSLSISHVEESDSGVWNCVANNSEGQDKM 302
S+L I + DSG + C A + +K+
Sbjct: 70 STLHIKDAQLEDSGTYFCAAEDGGSGNKL 98
>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane,
phosphorylation, immunoglobulin fold, signal; 1.90A
{Rattus norvegicus} SCOP: b.1.1.1
Length = 124
Score = 36.9 bits (85), Expect = 0.002
Identities = 17/94 (18%), Positives = 30/94 (31%), Gaps = 30/94 (31%)
Query: 232 LNVKKDESVILPC----SAQGNPLPTIKWYKQDSPVEES--------------------D 267
+ V L C S + + W Q ++ +
Sbjct: 9 VYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKE 68
Query: 268 RIQRIGS------SLSISHVEESDSGVWNCVANN 295
RIQ +G S+ I +++ SD+G + C N
Sbjct: 69 RIQWVGDPSWKDGSIVIHNLDYSDNGTFTCDVKN 102
Score = 32.6 bits (74), Expect = 0.059
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 61 LVLDRVQREDAGMYQCHVSADDDSAQMSAQVIL 93
+V+ + D G + C V D ++QV L
Sbjct: 83 IVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTL 115
Score = 29.6 bits (66), Expect = 0.82
Identities = 18/100 (18%), Positives = 35/100 (35%), Gaps = 5/100 (5%)
Query: 98 VEIASSNQVVVDVGHRIELHCRVSPKRLSSAKA---WLKDGLVLRRNSDEVLVL-DRVQR 153
+ + + +V VG ++ LHC S W R +
Sbjct: 1 IVVYTDREVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYI 60
Query: 154 EDAGMYQCHIEDGKYHMLSSGELIIHQVDESDRYRSYQCR 193
++ G ++ I+ G ++IH +D SD ++ C
Sbjct: 61 DEVGTFKERIQWVGDPSWKDGSIVIHNLDYSDN-GTFTCD 99
Score = 27.2 bits (60), Expect = 4.2
Identities = 4/19 (21%), Positives = 10/19 (52%)
Query: 146 LVLDRVQREDAGMYQCHIE 164
+V+ + D G + C ++
Sbjct: 83 IVIHNLDYSDNGTFTCDVK 101
>3c6l_A TCR 2W20 alpha chain; TCR-PMHC complex; 3.40A {Mus musculus} SCOP:
b.1.1.1 b.1.1.2
Length = 185
Score = 37.5 bits (87), Expect = 0.002
Identities = 18/79 (22%), Positives = 28/79 (35%), Gaps = 20/79 (25%)
Query: 238 ESVILPCSAQGNPLPTIKWYKQD--------------SPVEESDRIQRIG------SSLS 277
E+ IL CS + + WY Q S +E R SL
Sbjct: 16 ETAILNCSYEDSTFDYFPWYHQFPGESPALLIAIRPVSNKKEDGRFTIFFNKREKKFSLH 75
Query: 278 ISHVEESDSGVWNCVANNS 296
I+ + DS + C A+++
Sbjct: 76 IADSQPGDSATYFCAASDN 94
>2q86_A Valpha14 TCR; INKT cells, TCR, glycolipid recognition, innate
immunity, IM system; HET: NAG BMA MAN FUC; 1.85A {Mus
musculus} PDB: 3quy_C* 3o9w_C* 3qux_C* 3o8x_C* 3quz_C*
3rtq_C* 3rzc_C* 3ta3_C* 3tvm_C* 3qi9_C* 3ard_C* 3are_C*
3arf_C* 3arg_C* 3he6_C* 3he7_C* 3arb_C* 3scm_C* 3sda_C*
3sdc_C* ...
Length = 229
Score = 38.1 bits (88), Expect = 0.002
Identities = 18/85 (21%), Positives = 31/85 (36%), Gaps = 20/85 (23%)
Query: 232 LNVKKDESVILPCSAQGNPLPTIKWYKQD--------------SPVEESDRIQ------R 271
L V++ E+ +L C+ P ++WYKQD + R
Sbjct: 11 LVVRQGENCVLQCNYSVTPDNHLRWYKQDTGKGLVLLTVLVDQKDKTSNGRYSATLDKDA 70
Query: 272 IGSSLSISHVEESDSGVWNCVANNS 296
S+L I+ D+ + CV +
Sbjct: 71 KHSTLHITATLLDDTATYFCVVGDR 95
>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein
receptor, immunoglobulin V domain fold, symmetric dimer;
1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B
2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B
1p6a_B
Length = 126
Score = 36.8 bits (85), Expect = 0.002
Identities = 20/117 (17%), Positives = 33/117 (28%), Gaps = 37/117 (31%)
Query: 6 QVKSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAK---AWLK--------DGLVLR 54
SLSI +P + G L C+ + WL D +++
Sbjct: 1 DFARSLSIT-TPEEMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIIL 59
Query: 55 RNSDEV-------------------------LVLDRVQREDAGMYQCHVSADDDSAQ 86
+ D++ + + +Q D G YQC V A
Sbjct: 60 YSGDKIYDDYYPDLKGRVHFTSNDLKSGDASINVTNLQLSDIGTYQCKVKKAPGVAN 116
Score = 34.1 bits (78), Expect = 0.019
Identities = 15/96 (15%), Positives = 32/96 (33%), Gaps = 32/96 (33%)
Query: 238 ESVILPC----SAQGNPLPTIKWYKQDSPVEESD---------------------RIQRI 272
E+ LPC S + I+W + ++ D R+
Sbjct: 21 ETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFT 80
Query: 273 GS-------SLSISHVEESDSGVWNCVANNSEGQDK 301
+ S+++++++ SD G + C + G
Sbjct: 81 SNDLKSGDASINVTNLQLSDIGTYQCKVKKAPGVAN 116
Score = 33.3 bits (76), Expect = 0.033
Identities = 13/104 (12%), Positives = 27/104 (25%), Gaps = 36/104 (34%)
Query: 100 IASSNQVVVDVGHRIELHCRVSPKRLSSAK---AWLK--------DGLVLRRNSDEV--- 145
+ G L C+ + WL D +++ + D++
Sbjct: 9 TTPEEMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDD 68
Query: 146 ----------------------LVLDRVQREDAGMYQCHIEDGK 167
+ + +Q D G YQC ++
Sbjct: 69 YYPDLKGRVHFTSNDLKSGDASINVTNLQLSDIGTYQCKVKKAP 112
>2or7_A T-cell immunoglobulin and mucin domain- containing protein 2; beta
barrel, immunoglobulin fold, IGV domain, TIM, immune
system; 1.50A {Mus musculus}
Length = 115
Score = 36.5 bits (84), Expect = 0.003
Identities = 15/79 (18%), Positives = 24/79 (30%), Gaps = 25/79 (31%)
Query: 238 ESVILPC--SAQGNPLPTIKWYKQDSPV-----------------EESDRIQRIGS---- 274
V LPC S + + W + + + R Q G+
Sbjct: 13 HPVTLPCIYSTHLGGIVPMCWGLGECRHSYCIRSLIWTNGYTVTHQRNSRYQLKGNISEG 72
Query: 275 --SLSISHVEESDSGVWNC 291
SL+I + D G + C
Sbjct: 73 NVSLTIENTVVGDGGPYCC 91
Score = 33.0 bits (75), Expect = 0.043
Identities = 16/94 (17%), Positives = 23/94 (24%), Gaps = 29/94 (30%)
Query: 100 IASSNQVVVDVGHRIELHCRVSPKRLSSAKA-WLKDGL--------VLRRNSDEV----- 145
+ S V GH + L C S W ++ N V
Sbjct: 1 MESHTAVQGLAGHPVTLPCIYSTHLGGIVPMCWGLGECRHSYCIRSLIWTNGYTVTHQRN 60
Query: 146 ---------------LVLDRVQREDAGMYQCHIE 164
L ++ D G Y C +E
Sbjct: 61 SRYQLKGNISEGNVSLTIENTVVGDGGPYCCVVE 94
Score = 31.5 bits (71), Expect = 0.15
Identities = 16/93 (17%), Positives = 21/93 (22%), Gaps = 29/93 (31%)
Query: 15 MSPSGQVVVDVGHRIELHCRVSPKRLSSAKA-WLKDGL--------VLRRNSDEV----- 60
M V GH + L C S W ++ N V
Sbjct: 1 MESHTAVQGLAGHPVTLPCIYSTHLGGIVPMCWGLGECRHSYCIRSLIWTNGYTVTHQRN 60
Query: 61 ---------------LVLDRVQREDAGMYQCHV 78
L ++ D G Y C V
Sbjct: 61 SRYQLKGNISEGNVSLTIENTVVGDGGPYCCVV 93
>1ncn_A T lymphocyte activation antigen CD86; IG V, beta strands, immune
system; 2.70A {Homo sapiens} SCOP: b.1.1.1 PDB: 1i85_A
Length = 110
Score = 35.6 bits (82), Expect = 0.004
Identities = 14/90 (15%), Positives = 24/90 (26%), Gaps = 27/90 (30%)
Query: 20 QVVVDVGHRIELHCRVSPKRLSSAKA----WLKDG---LVLRRNSDEV------------ 60
++ +L C+ + + S W L E
Sbjct: 3 KIQAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRT 62
Query: 61 --------LVLDRVQREDAGMYQCHVSADD 82
L L +Q +D G+YQC +
Sbjct: 63 SFDSDSWTLRLHNLQIKDKGLYQCIIHHKK 92
Score = 34.8 bits (80), Expect = 0.008
Identities = 20/105 (19%), Positives = 32/105 (30%), Gaps = 31/105 (29%)
Query: 105 QVVVDVGHRIELHCRVSPKRLSSAKA----WLKDG---LVLRRNSDEV------------ 145
++ +L C+ + + S W L E
Sbjct: 3 KIQAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRT 62
Query: 146 --------LVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVD 182
L L +Q +D G+YQC I K G + IHQ++
Sbjct: 63 SFDSDSWTLRLHNLQIKDKGLYQCIIHHKKPT----GMIRIHQMN 103
Score = 29.8 bits (67), Expect = 0.45
Identities = 12/90 (13%), Positives = 34/90 (37%), Gaps = 23/90 (25%)
Query: 238 ESVILPCSAQGNPLP-----TIKWYKQDSPV-----EESDRIQRIGS------------- 274
E+ LPC + + W Q++ V ++ + S
Sbjct: 10 ETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDSW 69
Query: 275 SLSISHVEESDSGVWNCVANNSEGQDKMQL 304
+L + +++ D G++ C+ ++ + +++
Sbjct: 70 TLRLHNLQIKDKGLYQCIIHHKKPTGMIRI 99
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 36.5 bits (83), Expect = 0.004
Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 30/58 (51%)
Query: 227 EKHRILNVKKDESVILPCSAQGNPLPTIKWYKQDS-PVEESDRIQRIGSSLSI-SHVE 282
EK + KK ++ ++K Y DS P +L+I + +E
Sbjct: 18 EKQAL---KKLQA-------------SLKLYADDSAP------------ALAIKATME 47
Score = 31.8 bits (71), Expect = 0.19
Identities = 10/44 (22%), Positives = 15/44 (34%), Gaps = 20/44 (45%)
Query: 328 EKN--KRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIK 369
EK K+L ++ K++ SA P IK
Sbjct: 18 EKQALKKLQASLKLYA---------------DDSA---PALAIK 43
>1fo0_A Protein (BM3.3 T cell receptor alpha-chain); class I MHC, H-2KB,
TCR-PMHC complex, immune system; 2.50A {Mus musculus}
SCOP: b.1.1.1 PDB: 1nam_A*
Length = 116
Score = 35.7 bits (83), Expect = 0.004
Identities = 17/89 (19%), Positives = 31/89 (34%), Gaps = 22/89 (24%)
Query: 232 LNVKKDESVILPCSAQ-GNPLPTIKWYKQ------------DSPVEESDRIQRIG----- 273
++V + +V + C + + + WYKQ DS +E+ +
Sbjct: 10 ISVMEKTTVTMDCVYETQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQK 69
Query: 274 ----SSLSISHVEESDSGVWNCVANNSEG 298
L I+ + DS V+ C G
Sbjct: 70 PKSSIGLIITATQIEDSAVYFCAMRGDYG 98
>1nez_G T-cell surface glycoprotein CD8 alpha chain; immune system; HET:
NAG; 2.10A {Synthetic} SCOP: b.1.1.1 PDB: 1bqh_G*
3b9k_A* 2atp_A* 2arj_R
Length = 128
Score = 36.0 bits (83), Expect = 0.004
Identities = 18/102 (17%), Positives = 36/102 (35%), Gaps = 34/102 (33%)
Query: 13 IEMSPSGQVVVDVGHRIELHCRVS--------------------PKRL-----SSAKAWL 47
+ + P + ++G +++L C V P + S K
Sbjct: 7 LRIFPKK-MDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITW 65
Query: 48 KDGLVLRR--------NSDEVLVLDRVQREDAGMYQCHVSAD 81
+ L + N+ VL L++ +E+ G Y C V ++
Sbjct: 66 DEKLNSSKLFSAMRDTNNKYVLTLNKFSKENEGYYFCSVISN 107
Score = 33.0 bits (75), Expect = 0.044
Identities = 18/102 (17%), Positives = 33/102 (32%), Gaps = 33/102 (32%)
Query: 106 VVVDVGHRIELHCRVS--------------------PKRL-----SSAKAWLKDGLVLRR 140
+ ++G +++L C V P + S K + L +
Sbjct: 14 MDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSK 73
Query: 141 --------NSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSG 174
N+ VL L++ +E+ G Y C + SS
Sbjct: 74 LFSAMRDTNNKYVLTLNKFSKENEGYYFCSVISNSVMYFSSV 115
Score = 32.6 bits (74), Expect = 0.072
Identities = 10/94 (10%), Positives = 25/94 (26%), Gaps = 29/94 (30%)
Query: 232 LNVKKDESVILPCSAQGNPLPTIKWYKQ-------------------DSPVEESDRIQRI 272
++ + + V L C G+ W Q + +
Sbjct: 14 MDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSK 73
Query: 273 GSS----------LSISHVEESDSGVWNCVANNS 296
S L+++ + + G + C ++
Sbjct: 74 LFSAMRDTNNKYVLTLNKFSKENEGYYFCSVISN 107
>1kgc_D T-cell receptor alpha chain; LC13 clone, immune system; 1.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1mi5_D 3kpr_D 3kps_D
3o6f_C 3t0e_C 3pqy_D 2esv_D 3dxa_D 3dx9_A
Length = 206
Score = 36.9 bits (85), Expect = 0.004
Identities = 16/78 (20%), Positives = 26/78 (33%), Gaps = 19/78 (24%)
Query: 238 ESVILPCSAQG-NPLPTIKWYKQD----------------SPVEESDRIQRIG--SSLSI 278
E V LPC+ + I WY+Q + S I S+L +
Sbjct: 15 EPVHLPCNHSTISGTDYIHWYRQLPSQGPEYVIHGLTSNVNNRMASLAIAEDRKSSTLIL 74
Query: 279 SHVEESDSGVWNCVANNS 296
D+ V+ C+ +
Sbjct: 75 HRATLRDAAVYYCILPLA 92
>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation
marker blast-1, BCM1 surface antigen, leukocyte antigen
MEM-102, TCT.1; NMR {Homo sapiens}
Length = 121
Score = 35.7 bits (82), Expect = 0.005
Identities = 13/91 (14%), Positives = 27/91 (29%), Gaps = 17/91 (18%)
Query: 232 LNVKKDESVILPCSAQ-GNPLPTIKWYKQ----------------DSPVEESDRIQRIGS 274
+ V +V L S + W+ +S + R+
Sbjct: 14 MTVVSGSNVTLNISESLPENYKQLTWFYTFDQKIVEWDSRKSKYFESKFKGRVRLDPQSG 73
Query: 275 SLSISHVEESDSGVWNCVANNSEGQDKMQLF 305
+L IS V++ D+ + G ++
Sbjct: 74 ALYISKVQKEDNSTYIMRVLKKTGNEQEWKI 104
Score = 31.4 bits (71), Expect = 0.17
Identities = 18/106 (16%), Positives = 31/106 (29%), Gaps = 22/106 (20%)
Query: 9 SSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLK--DGLVLRRNSDEV------ 60
SS S + V G + L+ S W D ++ +S +
Sbjct: 2 SSGSSGQGHLVHMTVVSGSNVTLNISESLPENYKQLTWFYTFDQKIVEWDSRKSKYFESK 61
Query: 61 -------------LVLDRVQREDAGMYQCHVSADDDSAQMSAQVIL 93
L + +VQ+ED Y V + ++ L
Sbjct: 62 FKGRVRLDPQSGALYISKVQKEDNSTYIMRVL-KKTGNEQEWKIKL 106
Score = 29.5 bits (66), Expect = 0.66
Identities = 13/88 (14%), Positives = 24/88 (27%), Gaps = 21/88 (23%)
Query: 101 ASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLK--DGLVLRRNSDEV------------- 145
+ V G + L+ S W D ++ +S +
Sbjct: 9 GHLVHMTVVSGSNVTLNISESLPENYKQLTWFYTFDQKIVEWDSRKSKYFESKFKGRVRL 68
Query: 146 ------LVLDRVQREDAGMYQCHIEDGK 167
L + +VQ+ED Y +
Sbjct: 69 DPQSGALYISKVQKEDNSTYIMRVLKKT 96
>3bia_X T-cell immunoglobulin and mucin domain- containing protein 4; beta
barrel, immunoglobulin fold, IGV domain, TIM,
glycoprotein; HET: TLA; 2.20A {Mus musculus} PDB:
3bi9_X* 3bib_X*
Length = 116
Score = 35.7 bits (82), Expect = 0.005
Identities = 18/79 (22%), Positives = 28/79 (35%), Gaps = 25/79 (31%)
Query: 238 ESVILPC--SAQGNPLPTIKWYKQDSPV-----------------EESDRIQRIGS---- 274
+ V LPC + ++ W K P +S + +G
Sbjct: 12 QPVTLPCHYLSWSQSRNSMCWGKGSCPNSKCNAELLRTDGTRIISRKSTKYTLLGKVQFG 71
Query: 275 --SLSISHVEESDSGVWNC 291
SL+IS+ DSGV+ C
Sbjct: 72 EVSLTISNTNRGDSGVYCC 90
Score = 34.2 bits (78), Expect = 0.015
Identities = 16/92 (17%), Positives = 27/92 (29%), Gaps = 29/92 (31%)
Query: 102 SSNQVVVDVGHRIELHCRVSPKRLSSAKA-WLKDGLVLRRNSDEV--------------- 145
S + ++ +G + L C S W K + + E+
Sbjct: 2 SEDTIIGFLGQPVTLPCHYLSWSQSRNSMCWGKGSCPNSKCNAELLRTDGTRIISRKSTK 61
Query: 146 -------------LVLDRVQREDAGMYQCHIE 164
L + R D+G+Y C IE
Sbjct: 62 YTLLGKVQFGEVSLTISNTNRGDSGVYCCRIE 93
Score = 31.5 bits (71), Expect = 0.13
Identities = 13/91 (14%), Positives = 24/91 (26%), Gaps = 29/91 (31%)
Query: 17 PSGQVVVDVGHRIELHCRVSPKRLSSAKA-WLKDGLVLRRNSDEV--------------- 60
++ +G + L C S W K + + E+
Sbjct: 2 SEDTIIGFLGQPVTLPCHYLSWSQSRNSMCWGKGSCPNSKCNAELLRTDGTRIISRKSTK 61
Query: 61 -------------LVLDRVQREDAGMYQCHV 78
L + R D+G+Y C +
Sbjct: 62 YTLLGKVQFGEVSLTISNTNRGDSGVYCCRI 92
>1qfo_A Protein (sialoadhesin); immunoglobulin superfamily, carbohydrate
binding, immune system; HET: SIA GAL GLC; 1.85A {Mus
musculus} SCOP: b.1.1.1 PDB: 1od7_A* 1oda_A* 1od9_A*
1qfp_A 2bve_A* 1url_A*
Length = 119
Score = 35.6 bits (82), Expect = 0.005
Identities = 14/95 (14%), Positives = 29/95 (30%), Gaps = 27/95 (28%)
Query: 232 LNVKKDESVILPCS------AQGNPLPTIKWYKQDSPVEE---------------SDRIQ 270
+ +++PC + T WY S + R +
Sbjct: 10 VQGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRFRGRAE 69
Query: 271 RIGS------SLSISHVEESDSGVWNCVANNSEGQ 299
+G+ +L + ++ DSG +N S+
Sbjct: 70 LMGNMDHKVCNLLLKDLKPEDSGTYNFRFEISDSN 104
Score = 32.9 bits (75), Expect = 0.046
Identities = 7/39 (17%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
Query: 146 LVLDRVQREDAGMYQCHIEDGKYHMLSSGE-LIIHQVDE 183
L+L ++ ED+G Y E + + + +
Sbjct: 81 LLLKDLKPEDSGTYNFRFEISDSNRWLDVKGTTVTVTTD 119
Score = 29.0 bits (65), Expect = 0.87
Identities = 7/32 (21%), Positives = 14/32 (43%)
Query: 61 LVLDRVQREDAGMYQCHVSADDDSAQMSAQVI 92
L+L ++ ED+G Y D + + +
Sbjct: 81 LLLKDLKPEDSGTYNFRFEISDSNRWLDVKGT 112
>2nw2_A ELS4 TCR alpha chain; T cell receptor, immune system; 1.40A {Homo
sapiens} PDB: 2nx5_D 4dzb_A
Length = 200
Score = 36.8 bits (85), Expect = 0.006
Identities = 16/80 (20%), Positives = 27/80 (33%), Gaps = 19/80 (23%)
Query: 238 ESVILPCSAQGNPLPTIKWYKQD-------------SPVEESDRIQ------RIGSSLSI 278
V + C+ Q + + WY+Q +EE R + S L +
Sbjct: 15 AIVQINCTYQTSGFNGLFWYQQHAGEAPTFLSYNVLDGLEEKGRFSSFLSRSKGYSYLLL 74
Query: 279 SHVEESDSGVWNCVANNSEG 298
++ DS + C S G
Sbjct: 75 KELQMKDSASYLCAVQASGG 94
>3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB,
immune system/cytokine complex; 1.90A {Homo sapiens}
SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A*
1f42_A* 1f45_A* 3hmx_A* 3qwr_A*
Length = 306
Score = 37.4 bits (85), Expect = 0.006
Identities = 29/199 (14%), Positives = 51/199 (25%), Gaps = 13/199 (6%)
Query: 12 SIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDA 71
+ + G + L C + W D S + L + + DA
Sbjct: 7 DVYVVELDWYPDAPGEMVVLTCDTPEE---DGITWTLDQSSEVLGSGKTLTIQVKEFGDA 63
Query: 72 GMYQCHVSADDDSAQMSAQVILGGELVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAW 131
G Y CH + S + + + ++ L C W
Sbjct: 64 GQYTCHKGGEVLSHSLLLLHKKEDGIWSTDILKD-QKEPKNKTFLRCEAKNYSGRFTCWW 122
Query: 132 LKDG--------LVLRRNSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQVDE 183
L R +SD V A + ++ +Y + + +E
Sbjct: 123 LTTISTDLTFSVKSSRGSSDPQGVTCGAATLSAERVRGDNKEYEYSVECQEDSACPAAEE 182
Query: 184 SDRYRSYQCRGVNKLTGAS 202
S V+KL
Sbjct: 183 SLPIE-VMVDAVHKLKYEQ 200
>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody,
immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL
SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2
b.1.1.2 PDB: 2qej_A*
Length = 214
Score = 36.8 bits (85), Expect = 0.006
Identities = 11/71 (15%), Positives = 16/71 (22%), Gaps = 10/71 (14%)
Query: 238 ESVILPCSAQGNPLP---TIKWYKQDS-------PVEESDRIQRIGSSLSISHVEESDSG 287
L C+ G T W P + + S L +
Sbjct: 20 SEANLTCTLTGLRDASGVTFTWTPSSGKSAVQGPPERDLCGCYSVSSVLPGCAEPWNHGK 79
Query: 288 VWNCVANNSEG 298
+ C A E
Sbjct: 80 TFTCTAAYPES 90
>3rgv_A YAE62 TCR A chain; TCR, MHC, MHC class I, immune system; 2.90A {Mus
musculus} PDB: 3c60_A
Length = 200
Score = 36.5 bits (84), Expect = 0.006
Identities = 16/79 (20%), Positives = 27/79 (34%), Gaps = 20/79 (25%)
Query: 238 ESVILPCSAQGNPLPTIKWYKQD--------------SPVEESDRIQRIGS------SLS 277
+ + + C+ PT+ WY Q + S + L
Sbjct: 16 DFLFINCTYSTTGYPTLFWYVQYSGEGPQLLLQVTTANNKGSSRGFEATYDKGTTSFHLQ 75
Query: 278 ISHVEESDSGVWNCVANNS 296
+ V+E DS V+ C AN+
Sbjct: 76 KTSVQEIDSAVYYCAANSG 94
>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold,
diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A
Length = 238
Score = 36.7 bits (85), Expect = 0.006
Identities = 26/156 (16%), Positives = 45/156 (28%), Gaps = 31/156 (19%)
Query: 230 RILNVKKDESVILPCSAQGNPLPTIKWYKQD--------------SPVEESDRIQRIG-- 273
R V L C+ N + WY+QD E+ D
Sbjct: 8 RNKVAVTGGKVTLSCNQTNN-HNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKAS 66
Query: 274 ------SSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLSSGELIIHQVD 327
SL + S + V+ C + + ++ F D
Sbjct: 67 RPSQENFSLILELATPSQTSVYFCASGDLGQTNERLFFGHGTKLSVLG--------SADD 118
Query: 328 EKNKRLLSAAKMFEKHRILNVKKDESVILPCSAQGN 363
K ++ + + L V + E+ IL CS + +
Sbjct: 119 AKKDAAKKDGQVRQSPQSLTVWEGETAILNCSYENS 154
Score = 35.5 bits (82), Expect = 0.015
Identities = 36/195 (18%), Positives = 58/195 (29%), Gaps = 50/195 (25%)
Query: 126 SSAKAWLKDGLVLRRNSDE--VLVLDRVQREDAGMYQC--HIEDGKYHMLSSGELIIHQV 181
S+ K + DG R S E L+L+ +Y C L G V
Sbjct: 53 STEKGDIPDGYKASRPSQENFSLILELATPSQTSVYFCASGDLGQTNERLFFGHGTKLSV 112
Query: 182 DESDRYRSYQCRGVNKLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVI 241
S + + ++ + L+ V + E+ I
Sbjct: 113 LGSADDAKKDAAKKDG--------------QVRQSPQSLT------------VWEGETAI 146
Query: 242 LPCSAQGNPLPTIKWYKQD--------------SPVEESDR--IQRIGS----SLSISHV 281
L CS + + WY+Q S +E R I SL I+
Sbjct: 147 LNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADS 206
Query: 282 EESDSGVWNCVANNS 296
+ DS + C A ++
Sbjct: 207 QPGDSATYFCAAIDT 221
>2pnd_A V-SET and immunoglobulin domain containing 4; complement receptor,
IG-like domain, immune system; 1.00A {Mus musculus} PDB:
2icc_A 2ice_S* 2icf_S*
Length = 119
Score = 34.9 bits (80), Expect = 0.008
Identities = 10/79 (12%), Positives = 21/79 (26%), Gaps = 25/79 (31%)
Query: 238 ESVILPCS---AQGNPLPTIKWYKQDSPVEESDRIQRIGS-------------------- 274
V + C +G +KW + + ++
Sbjct: 17 GDVKIQCIYDPLRGYRQVLVKWLVRHGSDSVTIFLRDSTGDHIQQAKYRGRLKVSHKVPG 76
Query: 275 --SLSISHVEESDSGVWNC 291
SL I+ ++ D + C
Sbjct: 77 DVSLQINTLQMDDRNHYTC 95
Score = 31.1 bits (70), Expect = 0.20
Identities = 13/91 (14%), Positives = 25/91 (27%), Gaps = 29/91 (31%)
Query: 105 QVVVDVGHRIELHCRVSPKR--LSSAKAWLKDG------LVLRRNSDEV----------- 145
V +++ C P R WL + LR ++ +
Sbjct: 10 SVTGTWKGDVKIQCIYDPLRGYRQVLVKWLVRHGSDSVTIFLRDSTGDHIQQAKYRGRLK 69
Query: 146 ----------LVLDRVQREDAGMYQCHIEDG 166
L ++ +Q +D Y C +
Sbjct: 70 VSHKVPGDVSLQINTLQMDDRNHYTCEVTWQ 100
Score = 30.7 bits (69), Expect = 0.27
Identities = 14/105 (13%), Positives = 28/105 (26%), Gaps = 29/105 (27%)
Query: 15 MSPSGQVVVDVGHRIELHCRVSPKR--LSSAKAWLKDG------LVLRRNSDEV------ 60
+ V +++ C P R WL + LR ++ +
Sbjct: 5 LKTPESVTGTWKGDVKIQCIYDPLRGYRQVLVKWLVRHGSDSVTIFLRDSTGDHIQQAKY 64
Query: 61 ---------------LVLDRVQREDAGMYQCHVSADDDSAQMSAQ 90
L ++ +Q +D Y C V+ +
Sbjct: 65 RGRLKVSHKVPGDVSLQINTLQMDDRNHYTCEVTWQTPDGNQVIR 109
>1sq2_N Novel antigen receptor; immunoglobulin fold, protein-protein
complex, hydrolase/immune system complex; 1.45A
{Ginglymostoma cirratum} SCOP: b.1.1.1 PDB: 1t6v_N
Length = 113
Score = 34.7 bits (80), Expect = 0.010
Identities = 16/76 (21%), Positives = 28/76 (36%), Gaps = 14/76 (18%)
Query: 238 ESVILPCSAQG--NPLPTIKWYKQDSPVEESDRIQRIG------------SSLSISHVEE 283
ES+ + C + L + WY++ S + I + G SL I+ +
Sbjct: 16 ESLTINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRYVETVNSGSKSFSLRINDLTV 75
Query: 284 SDSGVWNCVANNSEGQ 299
D G + C + G
Sbjct: 76 EDGGTYRCGLGVAGGY 91
>1ymm_D T cell receptor alpha chain; protein-protein complex, T cell
repertoire, auto-immunity, I system; HET: NAG; 3.50A
{Homo sapiens} SCOP: b.1.1.1
Length = 207
Score = 36.2 bits (83), Expect = 0.010
Identities = 17/91 (18%), Positives = 40/91 (43%), Gaps = 21/91 (23%)
Query: 232 LNVKKDESVILPCSAQGNPLPTIKWYKQD--------------SPVEESDRIQ------R 271
L++++ E+ + CS + + + ++WY+Q+ + S R++ +
Sbjct: 11 LSIQEGENATMNCSYKTS-INNLQWYRQNSGRGLVHLILIRSNEREKHSGRLRVTLDTSK 69
Query: 272 IGSSLSISHVEESDSGVWNCVANNSEGQDKM 302
SSL I+ +D+ + C + + G K
Sbjct: 70 KSSSLLITASRAADTASYFCATDTTSGTYKY 100
>1xt5_A Variable region-containing chitin-binding protein 3; innate
immunity, VCBP, primordial antigen receptor, florida
lancelet, amphioxus; 1.15A {Branchiostoma floridae}
Length = 135
Score = 35.2 bits (80), Expect = 0.011
Identities = 20/109 (18%), Positives = 29/109 (26%), Gaps = 36/109 (33%)
Query: 232 LNVKKDESVILPCSAQGNP---LPTIKWYKQDSPVEESDRI------------------- 269
+ V +V LPCS Q P I W K SP +
Sbjct: 14 VEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSY 73
Query: 270 --------------QRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQL 304
+L ++HV D G + C + + L
Sbjct: 74 KESFGDFLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGL 122
Score = 33.7 bits (76), Expect = 0.037
Identities = 8/34 (23%), Positives = 13/34 (38%)
Query: 53 LRRNSDEVLVLDRVQREDAGMYQCHVSADDDSAQ 86
+ + L L V +D G Y C V+ +
Sbjct: 86 VANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTE 119
Score = 30.6 bits (68), Expect = 0.37
Identities = 7/32 (21%), Positives = 11/32 (34%)
Query: 138 LRRNSDEVLVLDRVQREDAGMYQCHIEDGKYH 169
+ + L L V +D G Y C +
Sbjct: 86 VANLAAPTLRLTHVHPQDGGRYWCQVAQWSIR 117
>2nms_A CMRF35-like-molecule 1; IG-superfamily, IG-V, NKP44-like, myeloid
IG-like receptor, inhibitory receptor, myelo-monocytic
cells; 2.60A {Homo sapiens}
Length = 124
Score = 34.1 bits (78), Expect = 0.018
Identities = 14/99 (14%), Positives = 29/99 (29%), Gaps = 25/99 (25%)
Query: 105 QVVVDVGHRIELHCRVSPKRLSSAKAWLK-------DGLV---------------LRRNS 142
V + + C + K W + LV ++ N
Sbjct: 11 TVNGLERGSLTVQCVYRSGWETYLKWWCRGAIWRDCKILVKTSGSEQEVKRDRVSIKDNQ 70
Query: 143 DE---VLVLDRVQREDAGMYQCHIEDGKYHMLSSGELII 178
+ ++ + + DA Y C IE + + ++ I
Sbjct: 71 KNRTFTVTMEDLMKTDADTYWCGIEKTGNDLGVTVQVTI 109
Score = 30.7 bits (69), Expect = 0.27
Identities = 11/84 (13%), Positives = 23/84 (27%), Gaps = 25/84 (29%)
Query: 20 QVVVDVGHRIELHCRVSPKRLSSAKAWLK-------DGLV---------------LRRNS 57
V + + C + K W + LV ++ N
Sbjct: 11 TVNGLERGSLTVQCVYRSGWETYLKWWCRGAIWRDCKILVKTSGSEQEVKRDRVSIKDNQ 70
Query: 58 DE---VLVLDRVQREDAGMYQCHV 78
+ ++ + + DA Y C +
Sbjct: 71 KNRTFTVTMEDLMKTDADTYWCGI 94
Score = 28.4 bits (63), Expect = 1.8
Identities = 8/75 (10%), Positives = 23/75 (30%), Gaps = 21/75 (28%)
Query: 238 ESVILPCS-AQGNPLPTIKWYKQDSPVEESDRIQRIGS--------------------SL 276
S+ + C G W + + ++ GS ++
Sbjct: 18 GSLTVQCVYRSGWETYLKWWCRGAIWRDCKILVKTSGSEQEVKRDRVSIKDNQKNRTFTV 77
Query: 277 SISHVEESDSGVWNC 291
++ + ++D+ + C
Sbjct: 78 TMEDLMKTDADTYWC 92
>2ol3_A BM3.3 T-cell receptor alpha-chain; T cell receptor, class I MHC,
H-2KBM8, TCR-PMHC complex, IMM system; HET: NAG; 2.90A
{Mus musculus} SCOP: b.1.1.1
Length = 142
Score = 34.2 bits (79), Expect = 0.019
Identities = 18/95 (18%), Positives = 33/95 (34%), Gaps = 22/95 (23%)
Query: 232 LNVKKDESVILPCSAQ-GNPLPTIKWYKQ------------DSPVEESDRIQRIG----- 273
++V + +V + C + + + WYKQ DS +E+ +
Sbjct: 10 ISVMEKTTVTMDCVYETQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQK 69
Query: 274 ----SSLSISHVEESDSGVWNCVANNSEGQDKMQL 304
L I+ + DS V+ C G +L
Sbjct: 70 PKSSIGLIITATQIEDSAVYFCAMRGDYGGSGNKL 104
>1tvd_A T cell receptor, ES204 V delta; immunoreceptor, TCR, delta chain,
variable domain; 1.90A {Homo sapiens} SCOP: b.1.1.1
Length = 116
Score = 33.8 bits (78), Expect = 0.021
Identities = 17/89 (19%), Positives = 27/89 (30%), Gaps = 24/89 (26%)
Query: 238 ESVILPCSAQGN-PLPTIKWYKQ-----------------DSPVEESDR--IQRIGS--- 274
V+L C+ P + WY+ + R ++ I +
Sbjct: 16 SEVVLLCTYDTVYSNPDLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKHILTQKA 75
Query: 275 -SLSISHVEESDSGVWNCVANNSEGQDKM 302
L IS V DS + C DK+
Sbjct: 76 FHLVISPVRTEDSATYYCAFTLPPPTDKL 104
>2yz1_A Tyrosine-protein phosphatase non-receptor type substrate 1;
beta-sandwich, structural genomics, NPPSFA; 1.40A {Mus
musculus}
Length = 120
Score = 33.4 bits (77), Expect = 0.031
Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 19/74 (25%)
Query: 238 ESVILPCSA-QGNPLPTIKWYKQDSPV---------EESDRIQRI-----GS----SLSI 278
+S +L C+ P+ IKWY+ E R+ + + S+ I
Sbjct: 23 DSTVLNCTLTSLLPVGPIKWYRGVGQSRLLIYSFTGEHFPRVTNVSDATKRNNMDFSIRI 82
Query: 279 SHVEESDSGVWNCV 292
S+V D+G + CV
Sbjct: 83 SNVTPEDAGTYYCV 96
>3dmm_C T-cell surface glycoprotein CD8 alpha chain; T cell CO-receptor
CD8AB MHC complex, immune response, membrane, MHC I,
phosphoprotein, transmembrane; 2.60A {Mus musculus}
Length = 166
Score = 33.8 bits (77), Expect = 0.034
Identities = 11/95 (11%), Positives = 27/95 (28%), Gaps = 31/95 (32%)
Query: 232 LNVKKDESVILPCSAQGNPLPTIKWYKQ------------------------DSPVEESD 267
++ + + V L C G+ W Q D + S
Sbjct: 19 MDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKL-NSS 77
Query: 268 RIQRIGS------SLSISHVEESDSGVWNCVANNS 296
++ L+++ + + G + C ++
Sbjct: 78 KLFSAMRDTNNKYVLTLNKFSKENEGYYFCSVISN 112
Score = 32.7 bits (74), Expect = 0.086
Identities = 18/103 (17%), Positives = 37/103 (35%), Gaps = 34/103 (33%)
Query: 12 SIEMSPSGQVVVDVGHRIELHCRVS--------------------PKRL-----SSAKAW 46
+ + P ++ ++G +++L C V P + S K
Sbjct: 11 ELRIFPK-KMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKIT 69
Query: 47 LKDGLVLRR--------NSDEVLVLDRVQREDAGMYQCHVSAD 81
+ L + N+ VL L++ +E+ G Y C V ++
Sbjct: 70 WDEKLNSSKLFSAMRDTNNKYVLTLNKFSKENEGYYFCSVISN 112
Score = 31.1 bits (70), Expect = 0.28
Identities = 18/102 (17%), Positives = 33/102 (32%), Gaps = 33/102 (32%)
Query: 106 VVVDVGHRIELHCRVS--------------------PKRL-----SSAKAWLKDGLVLRR 140
+ ++G +++L C V P + S K + L +
Sbjct: 19 MDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSK 78
Query: 141 --------NSDEVLVLDRVQREDAGMYQCHIEDGKYHMLSSG 174
N+ VL L++ +E+ G Y C + SS
Sbjct: 79 LFSAMRDTNNKYVLTLNKFSKENEGYYFCSVISNSVMYFSSV 120
>3qjh_A 5C.C7 alpha chain; immunoglobulin domain, T cell receptor, immune
system; 1.90A {Mus musculus} PDB: 3qiu_C* 3qiw_C* 3qjf_A
3qib_C 2ial_A 2iam_C 2ian_D 3rug_E* 3axl_A
Length = 205
Score = 34.3 bits (78), Expect = 0.036
Identities = 16/87 (18%), Positives = 34/87 (39%), Gaps = 19/87 (21%)
Query: 232 LNVKKDESVILPCSAQGNPLPTIKWYKQD------------SPVEESDRIQ------RIG 273
L++ + L C+ + ++W++++ S +E+ R++
Sbjct: 13 LSLHEGTGSALRCNFTTT-MRAVQWFRKNSRGSLINLFYLASGTKENGRLKSAFDSKERY 71
Query: 274 SSLSISHVEESDSGVWNCVANNSEGQD 300
S+L I + DSG + C A S
Sbjct: 72 STLHIRDAQLEDSGTYFCAAEASNTNK 98
>3bik_B Programmed cell death protein 1; CO-stimulation, receptor-ligand
complex, immunoglobulin-like sandwich, T cell, B cell,
programmed death; 2.65A {Mus musculus} SCOP: b.1.1.1
Length = 134
Score = 33.6 bits (77), Expect = 0.037
Identities = 13/94 (13%), Positives = 32/94 (34%), Gaps = 22/94 (23%)
Query: 232 LNVKKDESVILPCSA-QGNPLPTIKWYKQ-----------------DSPVEESDRIQRIG 273
L V + + CS + + W + + +I ++
Sbjct: 19 LTVSEGANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLP 78
Query: 274 S----SLSISHVEESDSGVWNCVANNSEGQDKMQ 303
+ ++I +DSG++ C A + + K++
Sbjct: 79 NRHDFHMNILDTRRNDSGIYLCGAISLHPKAKIE 112
Score = 28.6 bits (64), Expect = 1.7
Identities = 13/90 (14%), Positives = 26/90 (28%), Gaps = 27/90 (30%)
Query: 16 SPSGQVVVDVGHRIELHCRVS------------------PKRLSSAKAWLKDGLVLRRNS 57
P+ + V G C +S ++ ++ L + R
Sbjct: 15 YPA-WLTVSEGANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQ 73
Query: 58 --------DEVLVLDRVQREDAGMYQCHVS 79
D + + +R D+G+Y C
Sbjct: 74 IIQLPNRHDFHMNILDTRRNDSGIYLCGAI 103
>1cid_A T cell surface glycoprotein CD4; 2.80A {Rattus norvegicus} SCOP:
b.1.1.1 b.1.1.3
Length = 177
Score = 34.0 bits (77), Expect = 0.039
Identities = 29/141 (20%), Positives = 53/141 (37%), Gaps = 17/141 (12%)
Query: 35 VSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHVSADDDSAQMSAQVILG 94
+ +++S K+ L L + +V + AG ++ D + +V L
Sbjct: 48 LKNQKVSVQKSTSNPKFQLSETLPLTLQIPQVSLQFAGSGNLTLTLD--RGILYQEVNL- 104
Query: 95 GELVEIASSNQVVVDV--GHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQ 152
VV+ V L C V + LK R S + V+ +VQ
Sbjct: 105 -----------VVMKVTQPDSNTLTCEVMGPTSPKMRLILKQENQEARVSRQEKVI-QVQ 152
Query: 153 REDAGMYQCHIEDGKYHMLSS 173
+AG++QC + +G+ + S
Sbjct: 153 APEAGVWQCLLSEGEEVKMDS 173
Score = 28.2 bits (62), Expect = 2.9
Identities = 21/104 (20%), Positives = 42/104 (40%), Gaps = 14/104 (13%)
Query: 197 KLTGASLLSVNRGRLSLTENKRLLSAAKMFEKHRILNVKKDESVILPCSAQGNPLP---T 253
++ SL G L+LT ++ +L ++ V + +S L C G P
Sbjct: 75 QIPQVSLQFAGSGNLTLTLDRGILYQEVNLV---VMKVTQPDSNTLTCEVMG-PTSPKMR 130
Query: 254 IKWYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSE 297
+ +++ S + + I V+ ++GVW C+ + E
Sbjct: 131 LILKQENQEARVSRQEKVI-------QVQAPEAGVWQCLLSEGE 167
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET:
NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Length = 423
Score = 34.7 bits (79), Expect = 0.045
Identities = 19/64 (29%), Positives = 22/64 (34%), Gaps = 7/64 (10%)
Query: 244 CSAQGNPLPT---IKWYKQDSPVEESDRIQRIGSS----LSISHVEESDSGVWNCVANNS 296
C A G PLPT + K D V +I + DSGVW C N
Sbjct: 348 CKASGWPLPTNEEMTLVKPDGTVLHPKDFNHTDHFSVAIFTIHRILPPDSGVWVCSVNTV 407
Query: 297 EGQD 300
G
Sbjct: 408 AGMV 411
>2ak4_D SB27 T cell receptor alpha chain; bulged epitopes, PMHC/TCR
complex, immune system; 2.50A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.2 PDB: 3kxf_D 3nfj_I 3ffc_D
Length = 211
Score = 33.9 bits (77), Expect = 0.045
Identities = 19/93 (20%), Positives = 35/93 (37%), Gaps = 22/93 (23%)
Query: 232 LNVKKDESVILPCSAQG-NPLPTIKWYKQD------------SPVEESDRIQRIG----- 273
++V + E V L C + + + WYKQ S E+++ R
Sbjct: 13 ISVVEKEDVTLDCVYETRDTTYYLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWNFQK 72
Query: 274 ----SSLSISHVEESDSGVWNCVANNSEGQDKM 302
+ +I+ + DS V+ C + DK+
Sbjct: 73 STSSFNFTITASQVVDSAVYFCALSGFYNTDKL 105
>1oga_D T-cell receptor alpha chain V region, beta-2-microglobulin; immune
system/receptor, immune system/receptor/complex, TCR,
MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.2 PDB: 2xna_A 2xn9_A 2vlm_D 2vlk_D
2vlj_D 2vlr_D 2cdf_A 2wbj_C* 3qdm_D 3qeq_D
Length = 215
Score = 34.2 bits (78), Expect = 0.046
Identities = 16/82 (19%), Positives = 36/82 (43%), Gaps = 21/82 (25%)
Query: 238 ESVILPCSAQGNPLPTIKWYKQD--------------SPVEESDRIQRIG------SSLS 277
E++ + C++ + +++WY+Q+ V++ R+ SSL
Sbjct: 17 ENLTVYCNSS-SVFSSLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQFGDARKDSSLH 75
Query: 278 ISHVEESDSGVWNCVANNSEGQ 299
I+ + D+G++ C S+G
Sbjct: 76 ITAAQPGDTGLYLCAGAGSQGN 97
>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL
BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2
b.1.1.2 PDB: 1i1a_D*
Length = 239
Score = 34.1 bits (78), Expect = 0.050
Identities = 10/54 (18%), Positives = 18/54 (33%), Gaps = 9/54 (16%)
Query: 253 TIKWYKQDS---------PVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSE 297
W+ D P ++S+ R S L I + + + C N+
Sbjct: 52 RFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDWLNGKTFKCKVNSGA 105
>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN;
1.75A {Gallus gallus}
Length = 231
Score = 33.8 bits (77), Expect = 0.058
Identities = 11/96 (11%), Positives = 25/96 (26%), Gaps = 12/96 (12%)
Query: 234 VKKDESVILPCSAQGNPLP---TIKWYKQDS---------PVEESDRIQRIGSSLSISHV 281
+ L C P ++ W ++ S E + S++ +S
Sbjct: 25 LYISLDAKLRCLVVNLPSDSSLSVTWTREKSGNLRPDPMVLQEHFNGTYSASSAVPVSTQ 84
Query: 282 EESDSGVWNCVANNSEGQDKMQLFIQYAHGKYHMLS 317
+ + C + E + + G
Sbjct: 85 DWLSGERFTCTVQHEELPLPLSKSVYRNTGPTTPPL 120
>3r0n_A Poliovirus receptor-related protein 2; IG-domain, cell-adhesion
molecule, virus entry receptor, STR genomics,
PSI-biology; 1.30A {Homo sapiens}
Length = 128
Score = 32.3 bits (73), Expect = 0.078
Identities = 16/101 (15%), Positives = 31/101 (30%), Gaps = 40/101 (39%)
Query: 238 ESVILPC----SAQGNPLPTIKWYKQDSPVEE--------------------SDRIQRIG 273
+V LPC G + + W + D+P S+R+ +
Sbjct: 18 GTVELPCHLLPPVPGLYISLVTWQRPDAPANHQNVAAFHPKMGPSFPSPKPGSERLSFVS 77
Query: 274 S---------------SLSISHVEESDSGVWNC-VANNSEG 298
+ +L++ + D G + C A +G
Sbjct: 78 AKQSTGQDTEAELQDATLALHGLTVEDEGNYTCEFATFPKG 118
Score = 29.2 bits (65), Expect = 1.1
Identities = 12/43 (27%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Query: 38 KRLSSAKAWLKDGLVLRRNSDEV-LVLDRVQREDAGMYQCHVS 79
+RLS A G + L L + ED G Y C +
Sbjct: 71 ERLSFVSAKQSTGQDTEAELQDATLALHGLTVEDEGNYTCEFA 113
Score = 27.6 bits (61), Expect = 3.6
Identities = 12/42 (28%), Positives = 15/42 (35%), Gaps = 1/42 (2%)
Query: 123 KRLSSAKAWLKDGLVLRRNSDEV-LVLDRVQREDAGMYQCHI 163
+RLS A G + L L + ED G Y C
Sbjct: 71 ERLSFVSAKQSTGQDTEAELQDATLALHGLTVEDEGNYTCEF 112
>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC,
antigen recognition, TCR-PMHC, membrane receptor system;
2.75A {Mus musculus}
Length = 256
Score = 33.2 bits (76), Expect = 0.095
Identities = 31/158 (19%), Positives = 48/158 (30%), Gaps = 36/158 (22%)
Query: 234 VKKDESVILPCSAQGNPLPTIKWYKQ---------------DSPVEESDRIQ--RIGSS- 275
V + S+ L C + P + WY Q D V+ + + S
Sbjct: 15 VSEGASLQLRCKYSYSATPYLFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEAEFSKSDS 74
Query: 276 ---LSISHVEESDSGVWNCVANNSEGQDKMQLF-------IQYAHGKYHMLSSGELIIHQ 325
L + V SDS V+ C A +++G F + G SG
Sbjct: 75 SFHLRKASVHRSDSAVYFC-AVSAKGTGSKLSFGKGAKLTVSPGGGGSGGGGSGGGGSGG 133
Query: 326 VDEKNKRLLSAAKMFEKHRILNVKKDESVILPCSAQGN 363
S A + + R E+V L C +
Sbjct: 134 G-------GSEAAVTQSPRNKVTVTGENVTLSCRQTNS 164
>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D,
mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo
sapiens}
Length = 253
Score = 33.3 bits (76), Expect = 0.097
Identities = 13/92 (14%), Positives = 25/92 (27%), Gaps = 21/92 (22%)
Query: 230 RILNVKKDESVILPCSAQGNPLPTIKWYKQ--------------DSPVEESDRIQRIGSS 275
R V + ++V L C + + P + WY+Q E +
Sbjct: 9 RWRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLA 68
Query: 276 -------LSISHVEESDSGVWNCVANNSEGQD 300
L + S C ++ +
Sbjct: 69 TRVTDTELRLQVANMSQGRTLYCTSSADHWTN 100
>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain,
glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens}
PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A
1f6a_B 1g84_A
Length = 323
Score = 32.7 bits (74), Expect = 0.15
Identities = 6/74 (8%), Positives = 20/74 (27%), Gaps = 13/74 (17%)
Query: 238 ESVILPCSAQGNPLP----TIKWYKQD---------SPVEESDRIQRIGSSLSISHVEES 284
+S + C + W + ++ + + S+L + +
Sbjct: 129 KSPTITCLVVDLAPSKGTVQLTWSRASGKPVNHSTRKEEKQRNGTLTVTSTLPVGTRDWI 188
Query: 285 DSGVWNCVANNSEG 298
+ + C +
Sbjct: 189 EGETYQCRVTHPHL 202
>2pkd_A SLAM family member 5; signaling lymphocyte activation molecule,
IGV, immunoglobulin variable, IGC, immunoglobulin
constant, signaling protein; 2.04A {Homo sapiens}
Length = 111
Score = 31.0 bits (70), Expect = 0.18
Identities = 14/92 (15%), Positives = 26/92 (28%), Gaps = 21/92 (22%)
Query: 230 RILNVKKDESVILPCSAQ------------GNPLPTIKWYKQDSPVEES-------DRIQ 270
+N ESV P + Q + + ++ + +RI
Sbjct: 7 FTVNGILGESVTFPVNIQEPRQVKIIAWTSKTSVAYVTPGDSETAPVVTVTHRNYYERIH 66
Query: 271 --RIGSSLSISHVEESDSGVWNCVANNSEGQD 300
+L IS + D+G + N
Sbjct: 67 ALGPNYNLVISDLRMEDAGDYKADINTQADPY 98
>2i24_N NEW antigen receptor PBLA8; immunoglobulin fold, immune system;
1.35A {Ginglymostoma cirratum} PDB: 2i25_N 2i27_N 2i26_N
Length = 121
Score = 31.1 bits (71), Expect = 0.20
Identities = 20/90 (22%), Positives = 35/90 (38%), Gaps = 14/90 (15%)
Query: 223 AKMFEKHRILNVKKDESVILPCSAQG--NPLPTIKWYKQ--DSPVEESDR------IQRI 272
A++ + + + + ES+ + C + L T WY++ S EES
Sbjct: 1 ARVDQTPQRITKETGESLTINCVVRDSRCVLSTGYWYRKPPGSRNEESISDGGRYVETVN 60
Query: 273 GS----SLSISHVEESDSGVWNCVANNSEG 298
SL I+ + DSG + C + G
Sbjct: 61 RGSKSFSLRINDLTVKDSGTYRCKPESRYG 90
>1nko_A Sialic acid binding IG-like lectin 7; immunoglobulin, siglec7,
immune system; 1.45A {Homo sapiens} SCOP: b.1.1.1 PDB:
2g5r_A* 1o7v_A* 2df3_A* 1o7s_A* 2hrl_A*
Length = 132
Score = 31.1 bits (70), Expect = 0.22
Identities = 13/94 (13%), Positives = 27/94 (28%), Gaps = 30/94 (31%)
Query: 232 LNVKKDESVILPCS-------AQGNPLPTIKWYK------QDSPVEESDRIQRIGS---- 274
+ V++ V + CS + W++ +PV ++ +
Sbjct: 16 VTVQEGMCVHVRCSFSYPVDSDTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRD 75
Query: 275 -------------SLSISHVEESDSGVWNCVANN 295
+LSI SD+G +
Sbjct: 76 RFHLLGDPQTKNCTLSIRDARMSDAGRYFFRMEK 109
Score = 30.7 bits (69), Expect = 0.33
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 146 LVLDRVQREDAGMYQCHIEDGKY 168
L + + DAG Y +E G
Sbjct: 90 LSIRDARMSDAGRYFFRMEKGNI 112
Score = 27.6 bits (61), Expect = 3.6
Identities = 5/19 (26%), Positives = 8/19 (42%)
Query: 61 LVLDRVQREDAGMYQCHVS 79
L + + DAG Y +
Sbjct: 90 LSIRDARMSDAGRYFFRME 108
>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine;
HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*
Length = 240
Score = 32.2 bits (73), Expect = 0.22
Identities = 10/67 (14%), Positives = 24/67 (35%), Gaps = 9/67 (13%)
Query: 239 SVILPCSAQGNPLPTIKWYKQDS---------PVEESDRIQRIGSSLSISHVEESDSGVW 289
+ ++ + +P WY E+ + R+ S L++ H + + +
Sbjct: 45 TCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEY 104
Query: 290 NCVANNS 296
C +N
Sbjct: 105 KCKVSNK 111
>2d9c_A Signal-regulatory protein beta-1; beta-sandwich, SIRP-beta-1,
CD172B antigen, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 136
Score = 31.0 bits (71), Expect = 0.22
Identities = 16/74 (21%), Positives = 29/74 (39%), Gaps = 19/74 (25%)
Query: 238 ESVILPCSA-QGNPLPTIKWYKQDSPV---------EESDRIQRI-----GS----SLSI 278
ES L C+ P+ I W++ R+ + + S+SI
Sbjct: 24 ESATLRCAMTSLIPVGPIMWFRGAGAGRELIYNQKEGHFPRVTTVSELTKRNNLDFSISI 83
Query: 279 SHVEESDSGVWNCV 292
S++ +D+G + CV
Sbjct: 84 SNITPADAGTYYCV 97
Score = 31.0 bits (71), Expect = 0.26
Identities = 14/90 (15%), Positives = 24/90 (26%), Gaps = 26/90 (28%)
Query: 13 IEM--SPSGQVVVDVGHRIELHCRVS----------------PKRLSSAKAWLKDGLVLR 54
+++ V V G L C ++ + L + V
Sbjct: 9 LQVIQPEK-SVSVAAGESATLRCAMTSLIPVGPIMWFRGAGAGRELIYNQKEGHFPRVTT 67
Query: 55 R-------NSDEVLVLDRVQREDAGMYQCH 77
N D + + + DAG Y C
Sbjct: 68 VSELTKRNNLDFSISISNITPADAGTYYCV 97
Score = 30.3 bits (69), Expect = 0.39
Identities = 18/91 (19%), Positives = 25/91 (27%), Gaps = 23/91 (25%)
Query: 95 GELVEIASSNQVVVDVGHRIELHCRVS----------------PKRLSSAKAWLKDGLVL 138
GEL I V V G L C ++ + L + V
Sbjct: 7 GELQVIQPEKSVSVAAGESATLRCAMTSLIPVGPIMWFRGAGAGRELIYNQKEGHFPRVT 66
Query: 139 RR-------NSDEVLVLDRVQREDAGMYQCH 162
N D + + + DAG Y C
Sbjct: 67 TVSELTKRNNLDFSISISNITPADAGTYYCV 97
>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin,
glycosylation, immune system; HET: NAG FUC MAN GAL;
2.13A {Mus musculus}
Length = 218
Score = 31.4 bits (71), Expect = 0.30
Identities = 11/54 (20%), Positives = 20/54 (37%), Gaps = 9/54 (16%)
Query: 253 TIKWYKQDS---------PVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSE 297
I W+ + E+ + R+ S+L I H + + C NN +
Sbjct: 46 QISWFVNNVEVHTAQTQTHREDYNSTIRVVSTLPIQHQDWMSGKEFKCKVNNKD 99
>2jju_A Signal regulatory protein beta-1; immunoglobulin domain,
immunoglobulin superfamily, immune system,
transmembrane, paired receptor; 1.19A {Homo sapiens}
PDB: 2jjv_A 2uv3_A* 2jjt_A* 2jjs_A* 2jjw_A
Length = 127
Score = 30.8 bits (70), Expect = 0.30
Identities = 18/74 (24%), Positives = 29/74 (39%), Gaps = 19/74 (25%)
Query: 238 ESVILPCSA-QGNPLPTIKWYKQDSPVEESDRIQRIGS------------------SLSI 278
ES L C+ P+ I W++ E Q+ G S+SI
Sbjct: 19 ESATLRCAMTSLIPVGPIMWFRGAGAGRELIYNQKEGHFPRVTTVSELTKRNNLDFSISI 78
Query: 279 SHVEESDSGVWNCV 292
S++ +D+G + CV
Sbjct: 79 SNITPADAGTYYCV 92
Score = 29.6 bits (67), Expect = 0.65
Identities = 17/96 (17%), Positives = 25/96 (26%), Gaps = 33/96 (34%)
Query: 5 IQVKSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRR--------- 55
IQ + S+S V G L C ++ W + R
Sbjct: 7 IQPEKSVS----------VAAGESATLRCAMTSLIPVGPIMWFRGAGAGRELIYNQKEGH 56
Query: 56 --------------NSDEVLVLDRVQREDAGMYQCH 77
N D + + + DAG Y C
Sbjct: 57 FPRVTTVSELTKRNNLDFSISISNITPADAGTYYCV 92
Score = 28.1 bits (63), Expect = 2.3
Identities = 17/90 (18%), Positives = 23/90 (25%), Gaps = 23/90 (25%)
Query: 96 ELVEIASSNQVVVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRR--------------- 140
EL I V V G L C ++ W + R
Sbjct: 3 ELQVIQPEKSVSVAAGESATLRCAMTSLIPVGPIMWFRGAGAGRELIYNQKEGHFPRVTT 62
Query: 141 --------NSDEVLVLDRVQREDAGMYQCH 162
N D + + + DAG Y C
Sbjct: 63 VSELTKRNNLDFSISISNITPADAGTYYCV 92
>1xiw_B T-cell surface glycoprotein CD3 delta chain; CD3-epsilon,
CD3-delta, UCHT1-SCFV, immunoglobulin fold,
antibody-antigen complex; 1.90A {Homo sapiens} SCOP:
b.1.1.4
Length = 79
Score = 29.5 bits (66), Expect = 0.34
Identities = 11/70 (15%), Positives = 29/70 (41%), Gaps = 7/70 (10%)
Query: 22 VVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQCHVSAD 81
+ ++ R+ ++C S W++ + + L L + + G+Y+C+ +
Sbjct: 5 IEELEDRVFVNCNTSIT-------WVEGTVGTLLSDITRLDLGKRILDPRGIYRCNGTDI 57
Query: 82 DDSAQMSAQV 91
+ + QV
Sbjct: 58 YKDKESTVQV 67
Score = 25.7 bits (56), Expect = 9.5
Identities = 9/55 (16%), Positives = 23/55 (41%), Gaps = 7/55 (12%)
Query: 107 VVDVGHRIELHCRVSPKRLSSAKAWLKDGLVLRRNSDEVLVLDRVQREDAGMYQC 161
+ ++ R+ ++C S W++ + + L L + + G+Y+C
Sbjct: 5 IEELEDRVFVNCNTSIT-------WVEGTVGTLLSDITRLDLGKRILDPRGIYRC 52
>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell
receptor delta, immune system; HET: NAG MAN FUC; 3.40A
{Mus musculus} SCOP: b.1.1.1 b.1.1.2
Length = 207
Score = 31.1 bits (70), Expect = 0.36
Identities = 16/86 (18%), Positives = 34/86 (39%), Gaps = 20/86 (23%)
Query: 232 LNVKKDESVILPCSAQGNPLPTIKWYKQ------------DSPVEESDRIQRI------- 272
L++ + L C+ + +++W++Q S +E+ R++
Sbjct: 11 LSLHEGTDSALRCNFTTT-MRSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSKERR 69
Query: 273 GSSLSISHVEESDSGVWNCVANNSEG 298
S+L I + DSG + C A+
Sbjct: 70 YSTLHIRDAQLEDSGTYFCAADTWHI 95
>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus
musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A
1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B
2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B*
2aq3_A 3mc0_A 3byt_A 3bzd_A ...
Length = 238
Score = 31.1 bits (70), Expect = 0.40
Identities = 20/100 (20%), Positives = 27/100 (27%), Gaps = 23/100 (23%)
Query: 230 RILNVKKDESVILPCSAQGNPLPTIKWYKQD--------------SPVEESDRIQRI-GS 274
R V L C N + WY+QD E+ D S
Sbjct: 7 RNKVAVTGGKVTLSCQQTNNH-NNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKAS 65
Query: 275 -------SLSISHVEESDSGVWNCVANNSEGQDKMQLFIQ 307
SL + S + V+ C + G Q F
Sbjct: 66 RPSQEQFSLILELATPSQTSVYFCASGGGRGSYAEQFFGP 105
>3kgr_A LAIR-1, hlair1, leukocyte-associated immunoglobulin-like
receptor; IG-like domain, cell membrane, glycoprotein;
1.80A {Homo sapiens} PDB: 3rp1_A
Length = 106
Score = 30.1 bits (68), Expect = 0.41
Identities = 18/78 (23%), Positives = 28/78 (35%), Gaps = 13/78 (16%)
Query: 8 KSSLSIEMSPSGQVVVDVGHRIELHCRVSPK----RL----SSAKAWLKDGLVLRRNSDE 59
+ S+S E V+ +G + CR RL S +D + E
Sbjct: 9 RPSISAEPGT----VIPLGSHVTFVCRGPVGVQTFRLERESRSTYNDTEDVSQASPSESE 64
Query: 60 V-LVLDRVQREDAGMYQC 76
+D V +AG Y+C
Sbjct: 65 ARFRIDSVSEGNAGPYRC 82
>3kwl_A Uncharacterized protein; putative oxidoreductase, multidomain,
unknown function; 1.94A {Helicobacter pylori}
Length = 514
Score = 31.5 bits (71), Expect = 0.43
Identities = 16/111 (14%), Positives = 34/111 (30%), Gaps = 16/111 (14%)
Query: 256 WYKQDSPVEESDRIQRIGSSLSISHVEESDSGVWNCVANNSEGQDKMQLFIQYAHGKYH- 314
W + P E ++ I + +SGV N ++ H Y
Sbjct: 168 WLMKRYPTERDRLLEMI---------SQPESGVMNFLSVAHYLYKN---DDNIDHEIYEL 215
Query: 315 --MLSSGELIIHQVDEKNKRLLSAAKMFEKHRILNVKKDESVILPCSAQGN 363
+L++ ++ + KN L + N K ++ + +
Sbjct: 216 QEILTNSKIKPWKDFSKN-LLSLFQYHSNPPKTPNPPKTCALFNAYAKHLD 265
>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse
IGG, zinc-finger, DNA-binding, RNA-binding, tripartite
motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus
musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A
Length = 207
Score = 31.0 bits (70), Expect = 0.48
Identities = 12/77 (15%), Positives = 24/77 (31%), Gaps = 13/77 (16%)
Query: 234 VKKDESVILPCSAQG----NPLPTIKWYKQDS---------PVEESDRIQRIGSSLSISH 280
+ + + C +P W+ D E+ + R S L I H
Sbjct: 15 LTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTKPREEQFNSTFRSVSELPIMH 74
Query: 281 VEESDSGVWNCVANNSE 297
+ + + C N++
Sbjct: 75 QDWLNGKEFKCRVNSAA 91
>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC
complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A
{Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A*
3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A*
3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A*
2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...
Length = 207
Score = 31.0 bits (70), Expect = 0.48
Identities = 11/72 (15%), Positives = 23/72 (31%), Gaps = 13/72 (18%)
Query: 239 SVILPCSAQG----NPLPTIKWYKQDS---------PVEESDRIQRIGSSLSISHVEESD 285
+ + C +P WY E+ + R+ S L++ H + +
Sbjct: 20 TPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLN 79
Query: 286 SGVWNCVANNSE 297
+ C +N
Sbjct: 80 GKEYKCKVSNKA 91
>3nfj_J T cell receptor beta chain; immunoglobulin family, immune system;
2.68A {Homo sapiens} PDB: 3hg1_E
Length = 245
Score = 31.0 bits (70), Expect = 0.48
Identities = 18/90 (20%), Positives = 27/90 (30%), Gaps = 21/90 (23%)
Query: 230 RILNVKKDESVILPCSAQGNPLPTIKWYKQ--------------DSPVEES--DR--IQR 271
L + L C+ +G P + WY+Q + R
Sbjct: 9 ATLVQPVGSPLSLECTVEGTSNPNLYWYRQAAGRGLQLLFYSVGIGQISSEVPQNLSASR 68
Query: 272 IGSS---LSISHVEESDSGVWNCVANNSEG 298
LS + SDSG + C + S G
Sbjct: 69 PQDRQFILSSKKLLLSDSGFYLCAWSVSVG 98
>1zox_A CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor,
structural genomics, PSI, protein structure initiative;
2.10A {Mus musculus}
Length = 113
Score = 29.3 bits (66), Expect = 0.63
Identities = 17/87 (19%), Positives = 29/87 (33%), Gaps = 25/87 (28%)
Query: 105 QVVVDVGHRIELHCRVSPKRLSSAKAWLK-------DGLVLRRNSDEVLVLDRV------ 151
+V + + CR + K W + LV S++++ +RV
Sbjct: 10 EVSGQEQGSLTVQCRYTSGWKDYKKYWCQGVPQRSCKTLVETDASEQLVKKNRVSIRDNQ 69
Query: 152 ------------QREDAGMYQCHIEDG 166
+ DAG+Y C I G
Sbjct: 70 RDFIFTVTMEDLRMSDAGIYWCGITKG 96
Score = 27.4 bits (61), Expect = 3.8
Identities = 15/85 (17%), Positives = 29/85 (34%), Gaps = 25/85 (29%)
Query: 20 QVVVDVGHRIELHCRVSPKRLSSAKAWLK-------DGLVLRRNSDEVLVLDRV------ 66
+V + + CR + K W + LV S++++ +RV
Sbjct: 10 EVSGQEQGSLTVQCRYTSGWKDYKKYWCQGVPQRSCKTLVETDASEQLVKKNRVSIRDNQ 69
Query: 67 ------------QREDAGMYQCHVS 79
+ DAG+Y C ++
Sbjct: 70 RDFIFTVTMEDLRMSDAGIYWCGIT 94
>2z35_A T-cell receptor alpha-chain; immune receptor, immune system; 2.20A
{Mus musculus} PDB: 2pxy_A 2z31_A 1ac6_A
Length = 112
Score = 29.5 bits (67), Expect = 0.65
Identities = 17/85 (20%), Positives = 32/85 (37%), Gaps = 20/85 (23%)
Query: 238 ESVILPCSAQGNPLPTIKWYKQ--------------DSPVEESDRIQRIGS------SLS 277
+ + + C+ + P + WY Q D S + + L
Sbjct: 16 DFLTIHCNYSASGYPALFWYVQYPGEGPQFLFRASRDKEKGSSRGFEATYNKEATSFHLQ 75
Query: 278 ISHVEESDSGVWNCVANNSEGQDKM 302
+ V+ESDS V+ C + + G +K+
Sbjct: 76 KASVQESDSAVYYCALSENYGNEKI 100
>1fo0_B Protein (BM3.3 T cell receptor beta-chain); class I MHC, H-2KB,
TCR-PMHC complex, immune system; 2.50A {Mus musculus}
SCOP: b.1.1.1 PDB: 1nam_B* 2ol3_B* 1kb5_B 1kj2_B*
Length = 112
Score = 29.2 bits (66), Expect = 0.81
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 230 RILNVKKDESVILPCSAQGNPLPTIKWYKQDS 261
R V + ++V L C + + P + WY+QD
Sbjct: 9 RWRLVPRGQAVNLRCILKNSQYPWMSWYQQDL 40
>2frg_P TREM-like transcript-1; immunoglobulin-like, beta-sandwich, cell
surface receptor, triggering receptor, platelet
receptor, ITIM, immune system; 1.19A {Homo sapiens}
Length = 106
Score = 29.1 bits (65), Expect = 0.94
Identities = 14/84 (16%), Positives = 26/84 (30%), Gaps = 23/84 (27%)
Query: 106 VVVDVGHRIELHCRVSPKRLSSAKAWLK--------------------DGLVLRRNSDEV 145
+ VG I + C + + + K W + +
Sbjct: 7 LQAPVGSSILVQCHYRLQDVKAQKVWCRFLPEGCQPLVSSAVDRRAPAGRRTFLTDLGGG 66
Query: 146 LV---LDRVQREDAGMYQCHIEDG 166
L+ + +Q EDAG Y C ++
Sbjct: 67 LLQVEMVTLQEEDAGEYGCMVDGA 90
Score = 26.4 bits (58), Expect = 7.7
Identities = 15/81 (18%), Positives = 25/81 (30%), Gaps = 23/81 (28%)
Query: 21 VVVDVGHRIELHCRVSPKRLSSAKAWLK--------------------DGLVLRRNSDEV 60
+ VG I + C + + + K W + +
Sbjct: 7 LQAPVGSSILVQCHYRLQDVKAQKVWCRFLPEGCQPLVSSAVDRRAPAGRRTFLTDLGGG 66
Query: 61 LV---LDRVQREDAGMYQCHV 78
L+ + +Q EDAG Y C V
Sbjct: 67 LLQVEMVTLQEEDAGEYGCMV 87
>2vsd_A CHIR AB1; immune system receptor, FC receptor; HET: NAG NDG MAN;
1.82A {Gallus gallus}
Length = 105
Score = 28.5 bits (64), Expect = 1.1
Identities = 28/100 (28%), Positives = 39/100 (39%), Gaps = 20/100 (20%)
Query: 8 KSSLSIEMSPSGQVVVDVGHRIELHCRVSPKRLSSAKAWL-KDG-LVLRRNSDEV----- 60
+ SLS+ PS V +G + L C + +A L +G L + D+
Sbjct: 5 QPSLSLH--PSQ--GVSLGDTVTLRCHL---PRMAAWVQLWLNGTLRFDKEKDKEQDAAE 57
Query: 61 LVLDRVQREDAGMYQC--HVSADDDSAQMSAQVILGGELV 98
EDAG YQC VS ++ S V ELV
Sbjct: 58 FSFAVTNLEDAGTYQCRYQVSEPLWTSNQSDPV----ELV 93
Score = 27.0 bits (60), Expect = 4.8
Identities = 17/73 (23%), Positives = 26/73 (35%), Gaps = 10/73 (13%)
Query: 107 VVDVGHRIELHCRVSPKRLSSAKAWL-KDG-LVLRRNSDEV-----LVLDRVQREDAGMY 159
V +G + L C + +A L +G L + D+ EDAG Y
Sbjct: 15 GVSLGDTVTLRCHL---PRMAAWVQLWLNGTLRFDKEKDKEQDAAEFSFAVTNLEDAGTY 71
Query: 160 QCHIEDGKYHMLS 172
QC + + S
Sbjct: 72 QCRYQVSEPLWTS 84
>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology,
X-RAY solution scattering, constrained modelling, immune
system; NMR {Homo sapiens}
Length = 523
Score = 30.2 bits (68), Expect = 1.1
Identities = 11/78 (14%), Positives = 23/78 (29%), Gaps = 13/78 (16%)
Query: 233 NVKKDESVILPCSAQG----NPLPTIKWYKQD---------SPVEESDRIQRIGSSLSIS 279
+ + + C +P WY ++ + R+ S L++
Sbjct: 330 TLMISRTPEVTCVVVDVSHEDPQVKFNWYVDGVQVHNAKTKPREQQYNSTYRVVSVLTVL 389
Query: 280 HVEESDSGVWNCVANNSE 297
H D + C +N
Sbjct: 390 HQNWLDGKEYKCKVSNKA 407
>2q87_A CMRF35-H antigen; all-beta, immunoglobulin, IG-superfamily, IG-V,
NKP44-like, natural killer cell IG-like receptor,
inhibitory receptor; 1.70A {Homo sapiens}
Length = 110
Score = 28.7 bits (64), Expect = 1.1
Identities = 11/90 (12%), Positives = 29/90 (32%), Gaps = 20/90 (22%)
Query: 238 ESVILPCS-AQGNPLPTIKWYKQDSPVEESDRIQRIGS-------------------SLS 277
S+ + C + + W + ++ GS +++
Sbjct: 12 GSLSVQCPYEKEHRTLNKYWCRPPQIFLCDKIVETKGSAGKRNGRVSIRDSPANLSFTVT 71
Query: 278 ISHVEESDSGVWNCVANNSEGQDKMQLFIQ 307
+ ++ E D+G + C + QD ++
Sbjct: 72 LENLTEEDAGTYWCGVDTPWLQDFHDPVVE 101
>1xau_A B- and T-lymphocyte attenuator; IG domain, beta sandwich,
structural genomics, PSI, protein structure initiative;
1.80A {Mus musculus} SCOP: b.1.1.4
Length = 122
Score = 29.1 bits (64), Expect = 1.2
Identities = 12/84 (14%), Positives = 28/84 (33%), Gaps = 13/84 (15%)
Query: 228 KHRILNVKKDESVILPCSAQ-GNPLPTIKWYK---------QDSPVEESDRIQRIGSSLS 277
++ + E + C + P + W K + P + + +
Sbjct: 20 RNSKHSAWTGELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQLYTSWEENRSVPVF 79
Query: 278 ISHVEE---SDSGVWNCVANNSEG 298
+ H + SD+G ++C N +
Sbjct: 80 VLHFKPIHLSDNGSYSCSTNFNSQ 103
>2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune system;
1.63A {Mus musculus} PDB: 2ptv_A
Length = 110
Score = 28.7 bits (64), Expect = 1.3
Identities = 15/89 (16%), Positives = 24/89 (26%), Gaps = 22/89 (24%)
Query: 101 ASSNQVVVDVGHRIELHCRVSPKRLSSAKAWL--KDGLVLRRNSDE-------------- 144
S + G + L P WL K+ +L N +
Sbjct: 8 GSIPDINAYTGSNVTLKIHKDPLGPYRRITWLHTKNQKILEYNYNSTKTIFESEFKGRVY 67
Query: 145 ------VLVLDRVQREDAGMYQCHIEDGK 167
L + V++ED G Y +
Sbjct: 68 LEENNGALHISNVRKEDKGTYYMRVLRET 96
Score = 26.7 bits (59), Expect = 5.0
Identities = 16/96 (16%), Positives = 30/96 (31%), Gaps = 23/96 (23%)
Query: 21 VVVDVGHRIELHCRVSPKRLSSAKAWL--KDGLVLRRNSDE------------------- 59
+ G + L P WL K+ +L N +
Sbjct: 13 INAYTGSNVTLKIHKDPLGPYRRITWLHTKNQKILEYNYNSTKTIFESEFKGRVYLEENN 72
Query: 60 -VLVLDRVQREDAGMYQCHVSADD-DSAQMSAQVIL 93
L + V++ED G Y V + + +++ +V
Sbjct: 73 GALHISNVRKEDKGTYYMRVLRETENELKITLEVFD 108
Score = 26.4 bits (58), Expect = 8.3
Identities = 14/88 (15%), Positives = 23/88 (26%), Gaps = 18/88 (20%)
Query: 232 LNVKKDESVILPCSAQ-GNPLPTIKWYKQDS--------------PVEE-SDRIQ--RIG 273
+N +V L P I W + E R+
Sbjct: 13 INAYTGSNVTLKIHKDPLGPYRRITWLHTKNQKILEYNYNSTKTIFESEFKGRVYLEENN 72
Query: 274 SSLSISHVEESDSGVWNCVANNSEGQDK 301
+L IS+V + D G + +
Sbjct: 73 GALHISNVRKEDKGTYYMRVLRETENEL 100
>1u3h_A T-cell receptor alpha-chain; complex, immune system; 2.42A {Mus
musculus} SCOP: b.1.1.1 PDB: 1b88_A 1kj2_A* 1kb5_A
1d9k_A*
Length = 110
Score = 28.4 bits (64), Expect = 1.5
Identities = 19/82 (23%), Positives = 30/82 (36%), Gaps = 20/82 (24%)
Query: 238 ESVILPCSAQGNPLPTIKWYKQD------------SPVE--ESDRIQRIGS------SLS 277
E+ IL CS + + WY+Q S + E R + SL
Sbjct: 15 ETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLH 74
Query: 278 ISHVEESDSGVWNCVANNSEGQ 299
I+ + DS + C A+ + G
Sbjct: 75 IADSQPGDSATYFCAASANSGT 96
>4ety_A LAIR-1, mlair1, leukocyte-associated immunoglobulin-like
receptor; IG-like domain, extra celluar domain, domain
swappin nysgrc, structural genomics; 1.90A {Mus
musculus}
Length = 118
Score = 28.5 bits (64), Expect = 1.6
Identities = 11/77 (14%), Positives = 23/77 (29%), Gaps = 11/77 (14%)
Query: 8 KSSLSIEMSPSGQVVVDVGHRIELHCRVSPK-------RLSSAKAWLKDGLVLRRNSDEV 60
++ S ++ G + + C S K RL + + +++
Sbjct: 9 DITIFPNSSL----MISQGTFVTVVCSYSDKHDLYNMVRLEKDGSTFMEKSTEPYKTEDE 64
Query: 61 LVLDRVQREDAGMYQCH 77
+ V G Y C
Sbjct: 65 FEIGPVNETITGHYSCI 81
>3khq_A B-cell antigen receptor complex-associated protei chain; CD79B,
CD79A, IG-beta, BCR, IG domain, V-SET, immunoglobulin
protein binding; HET: FLC GSH; 1.70A {Mus musculus} PDB:
3kho_A*
Length = 133
Score = 28.1 bits (63), Expect = 2.2
Identities = 14/84 (16%), Positives = 24/84 (28%), Gaps = 19/84 (22%)
Query: 16 SPSGQVVVDVGHRIELHCRVSPKRLSSAKAWL--KDG----LVLRRNS---------DEV 60
P ++ HC + S A W + ++
Sbjct: 23 HPR-FAAKKRSSMVKFHCYTNH---SGALTWFRKRGSQQPQELVSEEGRIVQTQNGSVYT 78
Query: 61 LVLDRVQREDAGMYQCHVSADDDS 84
L + +Q ED G+Y C D +
Sbjct: 79 LTIQNIQYEDNGIYFCKQKCDSAN 102
>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex,
immunoglobulin fold, immune receptor, membr immune
system; HET: NAG; 2.55A {Homo sapiens}
Length = 268
Score = 28.9 bits (64), Expect = 2.2
Identities = 17/86 (19%), Positives = 26/86 (30%), Gaps = 26/86 (30%)
Query: 230 RILNVKKDESVILPCSA-QGNPLPTIKWYKQD--------------SPVEESDRIQR--- 271
+K + V L C G+ + WY+Q ++S
Sbjct: 34 SNKVTEKGKYVELRCDPISGHT--ALYWYRQSLGQGPEFLIYFQGTGAADDSGLPNDRFF 91
Query: 272 ------IGSSLSISHVEESDSGVWNC 291
S+L I E DS V+ C
Sbjct: 92 AVRPEGSVSTLKIQRTERGDSAVYLC 117
>1r9c_A Glutathione transferase; fosfomycin resistance protein, Mn binding,
antibiotic resist transferase; 1.83A {Mesorhizobium
loti} SCOP: d.32.1.2
Length = 139
Score = 28.3 bits (63), Expect = 2.3
Identities = 6/20 (30%), Positives = 8/20 (40%)
Query: 26 GHRIELHCRVSPKRLSSAKA 45
H ELH +RL+
Sbjct: 114 NHMFELHTGTLTERLARKAK 133
Score = 28.3 bits (63), Expect = 2.3
Identities = 6/20 (30%), Positives = 8/20 (40%)
Query: 111 GHRIELHCRVSPKRLSSAKA 130
H ELH +RL+
Sbjct: 114 NHMFELHTGTLTERLARKAK 133
>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens}
PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E
Length = 246
Score = 29.0 bits (65), Expect = 2.4
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 234 VKKDESVILPCSAQGNPLPTIKWYKQD 260
K SV + C + T+ WY+Q
Sbjct: 13 SKSGTSVKIECRSLDFQATTMFWYRQF 39
>1s7q_A H-2KB, H-2 class I histocompatibility antigen, K-B alpha chain;
LCMV, MHC class I, immune escape, immune system; 1.99A
{Mus musculus} SCOP: b.1.1.2 d.19.1.1 PDB: 1s7r_A 1s7s_A
1s7t_A 1bii_A 3qul_A 1s7v_A 1s7w_A 1s7x_A 3quk_A 1s7u_A
1nez_A*
Length = 348
Score = 29.0 bits (65), Expect = 2.6
Identities = 16/88 (18%), Positives = 26/88 (29%), Gaps = 19/88 (21%)
Query: 8 KSSLSIEMSPSGQVV--VDVGHRIELHCRVS---PKRLSSAKAWLKDGLVLRRNSDEVLV 62
++L SP V ++ L C P ++ W +G L ++ + V
Sbjct: 176 NATLLRTDSPKAHVTHHSRPEDKVTLRCWALGFYPADITLT--WQLNGEELIQDMELVET 233
Query: 63 LD------------RVQREDAGMYQCHV 78
V Y CHV
Sbjct: 234 RPAGDGTFQKWASVVVPLGKEQYYTCHV 261
>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II,
MEM receptor, molecular mimicry, multiple sclerosis,
immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo
sapiens}
Length = 279
Score = 28.7 bits (64), Expect = 2.6
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 234 VKKDESVILPCSAQGNPLPTIKWYKQD 260
K SV + C + T+ WY+Q
Sbjct: 36 SKSGTSVKIECRSLDFQATTMFWYRQF 62
>2p7o_A Glyoxalase family protein; fosfomycin resistance protein, Mn
binding, antibiotic resist metal binding protein,
hydrolase; 1.44A {Listeria monocytogenes} PDB: 2p7k_A
2p7l_A 2p7m_A 2p7p_A 2p7q_A
Length = 133
Score = 27.5 bits (61), Expect = 3.6
Identities = 6/19 (31%), Positives = 7/19 (36%)
Query: 26 GHRIELHCRVSPKRLSSAK 44
H ELH +RL
Sbjct: 114 NHLFELHAGTLEERLKRYH 132
Score = 27.5 bits (61), Expect = 3.6
Identities = 6/19 (31%), Positives = 7/19 (36%)
Query: 111 GHRIELHCRVSPKRLSSAK 129
H ELH +RL
Sbjct: 114 NHLFELHAGTLEERLKRYH 132
>4esk_A LAIR-1, mlair1, leukocyte-associated immunoglobulin-like
receptor; IG-like domain, domain swapping, collagen
receptor, structural genomics; 1.76A {Mus musculus}
Length = 102
Score = 26.9 bits (60), Expect = 3.7
Identities = 11/77 (14%), Positives = 23/77 (29%), Gaps = 11/77 (14%)
Query: 8 KSSLSIEMSPSGQVVVDVGHRIELHCRVSPK-------RLSSAKAWLKDGLVLRRNSDEV 60
++ S ++ G + + C S K RL + + +++
Sbjct: 9 DITIFPNSSL----MISQGTFVTVVCSYSDKHDLYNMVRLEKDGSTFMEKSTEPYKTEDE 64
Query: 61 LVLDRVQREDAGMYQCH 77
+ V G Y C
Sbjct: 65 FEIGPVNETITGHYSCI 81
>1npb_A Fosfomycin-resistance protein; manganese binding, potassium binding
loop, transferase; 2.50A {Serratia marcescens} SCOP:
d.32.1.2
Length = 141
Score = 27.4 bits (61), Expect = 3.8
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 26 GHRIELHCRVSPKRLSSAKAWLKDGLV 52
GH++ELH RL++ + G+V
Sbjct: 109 GHKLELHVGSLAARLAACREKPYAGMV 135
Score = 27.4 bits (61), Expect = 3.8
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 111 GHRIELHCRVSPKRLSSAKAWLKDGLV 137
GH++ELH RL++ + G+V
Sbjct: 109 GHKLELHVGSLAARLAACREKPYAGMV 135
>1hkf_A NKP44, NK cell activating receptor; natural cytotoxicity receptor,
immunoglobulin domain; 2.2A {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 27.3 bits (60), Expect = 3.8
Identities = 10/76 (13%), Positives = 25/76 (32%), Gaps = 22/76 (28%)
Query: 238 ESVILPC--SAQGNPLPTIKWYKQDSPVEESDRIQRIGS--------------------S 275
+++ + C G+ W K+ S + + +
Sbjct: 26 QTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGFFT 85
Query: 276 LSISHVEESDSGVWNC 291
++++ + E DSG + C
Sbjct: 86 VTMTDLREEDSGHYWC 101
Score = 27.3 bits (60), Expect = 4.3
Identities = 8/36 (22%), Positives = 15/36 (41%)
Query: 146 LVLDRVQREDAGMYQCHIEDGKYHMLSSGELIIHQV 181
+ + ++ ED+G Y C I + +S V
Sbjct: 86 VTMTDLREEDSGHYWCRIYRPSDNSVSKSVRFYLVV 121
>3dbx_A CD1-2 antigen; CD1, evolution, antigen-presentation, MHC-fold,
hydrophobic groove, immunoglobulin domain, membrane,
transmembrane; HET: NAG PLM; 2.00A {Gallus gallus}
Length = 289
Score = 28.3 bits (64), Expect = 4.2
Identities = 14/71 (19%), Positives = 24/71 (33%), Gaps = 23/71 (32%)
Query: 27 HRIELHCRVS---PKR--LSSAKAWLKDGLVLRRNSDEVLVLDR--------------VQ 67
++ L CRV+ P+ ++ WL+DG + + V
Sbjct: 203 VQLLLVCRVTSFYPRPIAVT----WLRDGREVPPSPALSTGTVLPNADLTYQLRSTLLVS 258
Query: 68 REDAGMYQCHV 78
+D Y C V
Sbjct: 259 PQDGHGYACRV 269
Score = 27.2 bits (61), Expect = 9.1
Identities = 13/72 (18%), Positives = 25/72 (34%), Gaps = 23/72 (31%)
Query: 112 HRIELHCRVS---PKR--LSSAKAWLKDGLVLRRNSDEVLVLDR--------------VQ 152
++ L CRV+ P+ ++ WL+DG + + V
Sbjct: 203 VQLLLVCRVTSFYPRPIAVT----WLRDGREVPPSPALSTGTVLPNADLTYQLRSTLLVS 258
Query: 153 REDAGMYQCHIE 164
+D Y C ++
Sbjct: 259 PQDGHGYACRVQ 270
>4f9p_D 103.2 anti-BTN3A1 antibody fragment; B7 superfamily, butyrophilin,
CD277, immune system; 3.52A {Mus musculus}
Length = 254
Score = 28.1 bits (63), Expect = 4.3
Identities = 25/94 (26%), Positives = 36/94 (38%), Gaps = 18/94 (19%)
Query: 221 SAAKMFEKHRILNVKKDESVILPCSAQGNPLPTIKWYKQ--------------DSPVEES 266
S + + L+V +SV L C A + + WY+Q S
Sbjct: 136 SDIVLTQSPVTLSVTPGDSVSLSCRASQSISNNLHWYRQKSHESPRLLIKYASQSIFGIP 195
Query: 267 DRIQRIGSS----LSISHVEESDSGVWNCVANNS 296
R GS LSI+ VE D G++ C +NS
Sbjct: 196 SRFSGSGSGTEFTLSINSVETEDFGIYFCQQSNS 229
>2jtd_A Myomesin-1, skelemin; immunoglobulin domain, muscle protein, thick
filament, immune system, cell adhesion; NMR {Mus
musculus}
Length = 142
Score = 27.3 bits (60), Expect = 4.5
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 146 LVLDRVQREDAGMYQCHIEDGKYHMLSSGELI 177
+ ++++Q ED G Y I+DGK S+ LI
Sbjct: 98 MFMEKLQDEDEGTYTFQIQDGKATGHSTLVLI 129
>3bdb_A Novel immune-type receptor 11; immunoglobulin variable
domain-like beta-sandwich, stalk region, immune system;
2.80A {Ictalurus punctatus}
Length = 137
Score = 27.3 bits (61), Expect = 5.0
Identities = 15/102 (14%), Positives = 27/102 (26%), Gaps = 39/102 (38%)
Query: 5 IQVKSSLSIEMSPSGQVVVDVGHRIELHCRVS------------------PKRL-----S 41
I+ + V G + + C +S P+ S
Sbjct: 3 IKELHVKT----------VKRGENVTMECSMSKVTNKNNLAWYRQSFGKVPQYFVRYYSS 52
Query: 42 SAKAWLKDGLVLRRNS------DEVLVLDRVQREDAGMYQCH 77
++ +G R S L + + +D G Y C
Sbjct: 53 NSGYKFAEGFKDSRFSMTVNDQKFDLNIIGAREDDGGEYFCG 94
>1nki_A Probable fosfomycin resistance protein; potassium binding loop,
manganese binding, transferase; 0.95A {Pseudomonas
aeruginosa} SCOP: d.32.1.2 PDB: 1lqo_A 1lqk_A 1lqp_A
1nnr_A
Length = 135
Score = 27.1 bits (60), Expect = 6.1
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 26 GHRIELHCRVSPKRLSSAK 44
GHR+E H RL++ +
Sbjct: 106 GHRLEAHVGDLRSRLAACR 124
Score = 27.1 bits (60), Expect = 6.1
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 111 GHRIELHCRVSPKRLSSAK 129
GHR+E H RL++ +
Sbjct: 106 GHRLEAHVGDLRSRLAACR 124
>3ov6_A Beta-2-microglobulin, T-cell surface glycoprotein cell surface
glycoprotein CD1B; MHC, immunoglobulin domain, immune
system, antigen presentat; HET: NAG D12 MK0; 2.50A
{Homo sapiens}
Length = 397
Score = 27.7 bits (62), Expect = 7.0
Identities = 14/67 (20%), Positives = 21/67 (31%), Gaps = 16/67 (23%)
Query: 26 GHRIELHCRVS---PKRLSSAKAWLKDGLVL--------RRNSDE---VLVLDRVQREDA 71
G L+C VS P + LK+G + + D +L +
Sbjct: 21 GKSNFLNCYVSGFHPSDIEVD--LLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEK 78
Query: 72 GMYQCHV 78
Y C V
Sbjct: 79 DEYACRV 85
>3uh9_A Metallothiol transferase FOSB 2; structural genomics, center for
structural genomics of infec diseases, csgid, alpha-beta
fold, cytosol; HET: MSE; 1.60A {Bacillus anthracis}
Length = 145
Score = 26.7 bits (59), Expect = 7.1
Identities = 7/20 (35%), Positives = 8/20 (40%)
Query: 26 GHRIELHCRVSPKRLSSAKA 45
GH+ E H RL K
Sbjct: 111 GHKFEFHTGTLQNRLEYYKE 130
Score = 26.7 bits (59), Expect = 7.1
Identities = 7/20 (35%), Positives = 8/20 (40%)
Query: 111 GHRIELHCRVSPKRLSSAKA 130
GH+ E H RL K
Sbjct: 111 GHKFEFHTGTLQNRLEYYKE 130
>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane,
immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B*
3q5t_A
Length = 240
Score = 27.3 bits (60), Expect = 7.1
Identities = 14/84 (16%), Positives = 27/84 (32%), Gaps = 23/84 (27%)
Query: 230 RILNVKKDESVILPCSAQGNPLPTIKWYKQD--------------SPVEESDRIQRI--- 272
R + +K +L C + WY+Q ++ R
Sbjct: 10 RHIIKEKGGRSVLTCIPISGHS-NVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQ 68
Query: 273 -----GSSLSISHVEESDSGVWNC 291
S +++S +E DS ++ C
Sbjct: 69 QFDDYHSEMNMSALELEDSAMYFC 92
>3s6c_A Beta-2-microglobulin, T-cell surface glycoprotein
membrane-associated; MHC, immunoglobulin domain, immune
system, antigen presentat glycosylation; HET: NAG FUC;
2.90A {Homo sapiens}
Length = 392
Score = 27.3 bits (61), Expect = 7.9
Identities = 14/67 (20%), Positives = 21/67 (31%), Gaps = 16/67 (23%)
Query: 26 GHRIELHCRVS---PKRLSSAKAWLKDGLVL--------RRNSDE---VLVLDRVQREDA 71
G L+C VS P + LK+G + + D +L +
Sbjct: 18 GKSNFLNCYVSGFHPSDIEVD--LLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEK 75
Query: 72 GMYQCHV 78
Y C V
Sbjct: 76 DEYACRV 82
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding
protein, metalloregulatory protein; 1.61A {Bacillus
subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A
2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A*
2hyg_D 3r60_A* 3r61_A*
Length = 142
Score = 26.5 bits (59), Expect = 9.0
Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Query: 195 VNKLTGASLLSVNRGR-LSLTENKRLLSAAKMFEKHRIL 232
V KL L + R L LT + + ++ +H +L
Sbjct: 43 VQKLDKDEYLIYEKYRGLVLTSKGKKI-GKRLVYRHELL 80
>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen,
beta-turn, immune system; HET: NLE; NMR {Rattus
norvegicus} SCOP: b.1.1.1 b.1.1.1
Length = 257
Score = 27.0 bits (60), Expect = 9.2
Identities = 22/92 (23%), Positives = 33/92 (35%), Gaps = 24/92 (26%)
Query: 94 GGELVEIASSNQVVVDVGHRIELHCRVS-----------------PKRLSSAKAWLKDGL 136
G ++ S + + VG R+ L C+ S PK L L+ G
Sbjct: 137 GSDIKLTQSPSLLSASVGDRVTLSCKGSQNINNYLAWYQQKLGEAPKLLIYNTNSLQTG- 195
Query: 137 VLRRNS------DEVLVLDRVQREDAGMYQCH 162
+ R S D L + +Q ED Y C+
Sbjct: 196 IPSRFSGSGSGTDYTLTISSLQPEDVATYFCY 227
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.132 0.379
Gapped
Lambda K H
0.267 0.0724 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,411,291
Number of extensions: 323125
Number of successful extensions: 3202
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1910
Number of HSP's successfully gapped: 901
Length of query: 371
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 276
Effective length of database: 4,049,298
Effective search space: 1117606248
Effective search space used: 1117606248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.1 bits)