BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14548
(482 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2Q8F|A Chain A, Structure Of Pyruvate Dehydrogenase Kinase Isoform 1
pdb|2Q8G|A Chain A, Structure Of Pyruvate Dehydrogenase Kinase Isoform 1 In
Complex With Glucose-Lowering Drug Azd7545
pdb|2Q8H|A Chain A, Structure Of Pyruvate Dehydrogenase Kinase Isoform 1 In
Complex With Dichloroacetate (Dca)
Length = 407
Score = 476 bits (1224), Expect = e-134, Method: Compositional matrix adjust.
Identities = 223/392 (56%), Positives = 289/392 (73%), Gaps = 7/392 (1%)
Query: 11 VSKMLDFYSQFNPSPLSIKQFIDFG-LSASEEKSFMFLRKELPVRLANIMKEIHLLPDNL 69
V +DFY++F+PSPLS+KQF+DFG ++A E+ SFMFLR+ELPVRLANIMKEI LLPDNL
Sbjct: 13 VPGQVDFYARFSPSPLSMKQFLDFGSVNACEKTSFMFLRQELPVRLANIMKEISLLPDNL 72
Query: 70 LRMPSVGLVNEWYAMSFDEILEFEKADSNSTDTLDKFCKALVKIRNRHSDVVQTMAQGVM 129
LR PSV LV WY S E+L+F+ + + F +++IRNRH+DV+ TMAQGV+
Sbjct: 73 LRTPSVQLVQSWYIQSLQELLDFKDKSAEDAKAIYDFTDTVIRIRNRHNDVIPTMAQGVI 132
Query: 130 ELKDSHDVDHQTENSIQYFLDRFYMSRISIRMLINQHTLLFGDELTRGDSSLRHIGCIDP 189
E K+S VD T ++QYFLDRFYMSRISIRML+NQH+LLFG + S +HIG I+P
Sbjct: 133 EYKESFGVDPVTSQNVQYFLDRFYMSRISIRMLLNQHSLLFGGKGKGSPSHRKHIGSINP 192
Query: 190 QCDLIGVVKDAYENARFLCEQYYLSSPELKVTEHNEYEKGEPVRIIYVPSHLYHMLFELF 249
C+++ V+KD YENAR LC+ YY++SPEL++ E N G+P++++YVPSHLYHM+FELF
Sbjct: 193 NCNVLEVIKDGYENARRLCDLYYINSPELELEELNAKSPGQPIQVVYVPSHLYHMVFELF 252
Query: 250 KNSMRATVEHHTDTDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVTDMLFHYMYSTAPQ 309
KN+MRAT+EHH + V PPI+V V G ED+ VKMSD+GGG+P D LF+YMYSTAP+
Sbjct: 253 KNAMRATMEHHANRGVYPPIQVHVTLGNEDLTVKMSDRGGGVPLRKIDRLFNYMYSTAPR 312
Query: 310 PSKSDAHTVPLAGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLKALSNEANELLP 369
P + VPLAG+GYGLPISRLYA+YF GD+ L S +G GTDA+IY+KALS ++ E LP
Sbjct: 313 PRVETSRAVPLAGFGYGLPISRLYAQYFQGDLKLYSLEGYGTDAVIYIKALSTDSIERLP 372
Query: 370 IFNKTSSKFYRATIPTGDWSSTQSACMEHRHP 401
++NK + K Y DW C+ R P
Sbjct: 373 VYNKAAWKHYNTNHEADDW------CVPSREP 398
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 40/65 (61%), Positives = 52/65 (80%)
Query: 417 AHTVPLAGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLKALSNEANELLPIFNKT 476
+ VPLAG+GYGLPISRLYA+YF GD+ L S +G GTDA+IY+KALS ++ E LP++NK
Sbjct: 318 SRAVPLAGFGYGLPISRLYAQYFQGDLKLYSLEGYGTDAVIYIKALSTDSIERLPVYNKA 377
Query: 477 SSKFY 481
+ K Y
Sbjct: 378 AWKHY 382
>pdb|1Y8N|A Chain A, Crystal Structure Of The Pdk3-L2 Complex
pdb|1Y8O|A Chain A, Crystal Structure Of The Pdk3-L2 Complex
pdb|1Y8P|A Chain A, Crystal Structure Of The Pdk3-L2 Complex
pdb|2Q8I|A Chain A, Pyruvate Dehydrogenase Kinase Isoform 3 In Complex With
Antitumor Drug Radicicol
pdb|2PNR|A Chain A, Crystal Structure Of The Asymmetric Pdk3-L2 Complex
pdb|2PNR|B Chain B, Crystal Structure Of The Asymmetric Pdk3-L2 Complex
pdb|2PNR|E Chain E, Crystal Structure Of The Asymmetric Pdk3-L2 Complex
pdb|2PNR|F Chain F, Crystal Structure Of The Asymmetric Pdk3-L2 Complex
Length = 419
Score = 464 bits (1193), Expect = e-131, Method: Compositional matrix adjust.
Identities = 227/388 (58%), Positives = 285/388 (73%), Gaps = 10/388 (2%)
Query: 11 VSKMLDFYSQFNPSPLSIKQFIDFGL-SASEEKSFMFLRKELPVRLANIMKEIHLLPDNL 69
V K ++ YS+F+PSPLSIKQF+DFG +A E+ S+MFLRKELPVRLAN M+E++LLPDNL
Sbjct: 25 VPKQIERYSRFSPSPLSIKQFLDFGRDNACEKTSYMFLRKELPVRLANTMREVNLLPDNL 84
Query: 70 LRMPSVGLVNEWYAMSFDEILEFEKADSNSTDTLDKFCKALVKIRNRHSDVVQTMAQGVM 129
L PSVGLV WY SF E+LE+E LD F + L+K+RNRH+DVV TMAQGV+
Sbjct: 85 LNRPSVGLVQSWYMQSFLELLEYENKSPEDPQVLDNFLQVLIKVRNRHNDVVPTMAQGVI 144
Query: 130 ELKDSHDVDHQTENSIQYFLDRFYMSRISIRMLINQHTLLFGDELTRGDSS---LRHIGC 186
E K+ D +IQYFLDRFY +RIS RMLINQHTLLFG GD++ +HIG
Sbjct: 145 EYKEKFGFDPFISTNIQYFLDRFYTNRISFRMLINQHTLLFG-----GDTNPVHPKHIGS 199
Query: 187 IDPQCDLIGVVKDAYENARFLCEQYYLSSPELKVTEHNEYEKGEPVRIIYVPSHLYHMLF 246
IDP C++ VVKDAYE A+ LCEQYYL +PEL+V E N +P++++YVPSHL+HMLF
Sbjct: 200 IDPTCNVADVVKDAYETAKMLCEQYYLVAPELEVEEFNAKAPDKPIQVVYVPSHLFHMLF 259
Query: 247 ELFKNSMRATVEHHTD-TDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVTDMLFHYMYS 305
ELFKNSMRATVE + D + P ++ V GKED+ +K+SD GGG+P D LF+YMYS
Sbjct: 260 ELFKNSMRATVELYEDRKEGYPAVKTLVTLGKEDLSIKISDLGGGVPLRKIDRLFNYMYS 319
Query: 306 TAPQPSKSDAHTVPLAGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLKALSNEAN 365
TAP+PS PLAG+GYGLPISRLYARYF GD+ L S +G+GTDA+IYLKALS+E+
Sbjct: 320 TAPRPSLEPTRAAPLAGFGYGLPISRLYARYFQGDLKLYSMEGVGTDAVIYLKALSSESF 379
Query: 366 ELLPIFNKTSSKFYRATIPTGDWSSTQS 393
E LP+FNK++ + Y+ T DWS+ S
Sbjct: 380 ERLPVFNKSAWRHYKTTPEADDWSNPSS 407
Score = 96.3 bits (238), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 42/66 (63%), Positives = 54/66 (81%)
Query: 417 AHTVPLAGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLKALSNEANELLPIFNKT 476
PLAG+GYGLPISRLYARYF GD+ L S +G+GTDA+IYLKALS+E+ E LP+FNK+
Sbjct: 329 TRAAPLAGFGYGLPISRLYARYFQGDLKLYSMEGVGTDAVIYLKALSSESFERLPVFNKS 388
Query: 477 SSKFYR 482
+ + Y+
Sbjct: 389 AWRHYK 394
>pdb|2BTZ|A Chain A, Crystal Structures Of Human Pyruvate Dehydrogenase Kinase
2 Containing Physiological And Synthetic Ligands
pdb|2BU2|A Chain A, Crystal Structures Of Human Pyruvate Dehydrogenase Kinase
2 Containing Physiological And Synthetic Ligands
pdb|2BU5|A Chain A, Crystal Structures Of Human Pyruvate Dehydrogenase Kinase
2 Containing Physiological And Synthetic Ligands
pdb|2BU6|A Chain A, Crystal Structures Of Human Pyruvate Dehydrogenase Kinase
2 Containing Physiological And Synthetic Ligands
pdb|2BU7|A Chain A, Crystal Structures Of Human Pyruvate Dehydrogenase Kinase
2 Containing Physiological And Synthetic Ligands
pdb|2BU8|A Chain A, Crystal Structures Of Human Pyruvate Dehydrogenase Kinase
2 Containing Physiological And Synthetic Ligands
Length = 394
Score = 452 bits (1164), Expect = e-127, Method: Compositional matrix adjust.
Identities = 218/381 (57%), Positives = 282/381 (74%), Gaps = 4/381 (1%)
Query: 9 ASVSKMLDFYSQFNPSPLSIKQFIDFGLS-ASEEKSFMFLRKELPVRLANIMKEIHLLPD 67
S K ++ +S+F+PSPLS+KQF+DFG S A E+ SF FLR+ELPVRLANIMKEI+LLPD
Sbjct: 1 GSAPKYIEHFSKFSPSPLSMKQFLDFGSSNACEKTSFTFLRQELPVRLANIMKEINLLPD 60
Query: 68 NLLRMPSVGLVNEWYAMSFDEILEFEKADSNSTDTLDKFCKALVKIRNRHSDVVQTMAQG 127
+L PSV LV WY S +I+EF D TL +F ALV IRNRH+DVV TMAQG
Sbjct: 61 RVLSTPSVQLVQSWYVQSLLDIMEFLDKDPEDHRTLSQFTDALVTIRNRHNDVVPTMAQG 120
Query: 128 VMELKDSHDVDHQTENSIQYFLDRFYMSRISIRMLINQHTLLFGDELTRGDSSLRHIGCI 187
V+E KD++ D + +IQYFLDRFY+SRISIRMLINQHTL+F + + + +HIG I
Sbjct: 121 VLEYKDTYGDDPVSNQNIQYFLDRFYLSRISIRMLINQHTLIF--DGSTNPAHPKHIGSI 178
Query: 188 DPQCDLIGVVKDAYENARFLCEQYYLSSPELKVTEHNEYEKGEPVRIIYVPSHLYHMLFE 247
DP C++ VVKDAY+ A+ LC++YY++SP+L++ E N +P+ ++YVPSHLYHMLFE
Sbjct: 179 DPNCNVSEVVKDAYDMAKLLCDKYYMASPDLEIQEINAANSKQPIHMVYVPSHLYHMLFE 238
Query: 248 LFKNSMRATVEHHTDTDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVTDMLFHYMYSTA 307
LFKN+MRATVE H + +LPPI+V V G+ED+ +KMSD+GGG+P + LF YMYSTA
Sbjct: 239 LFKNAMRATVESHESSLILPPIKVMVALGEEDLSIKMSDRGGGVPLRKIERLFSYMYSTA 298
Query: 308 PQPSKSDAHTVPLAGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLKALSNEANEL 367
P P T PLAG+GYGLPISRLYA+YF GD+ L S +G GTDA+IYLKALS ++ E
Sbjct: 299 PTPQPGTGGT-PLAGFGYGLPISRLYAKYFQGDLQLFSMEGFGTDAVIYLKALSTDSVER 357
Query: 368 LPIFNKTSSKFYRATIPTGDW 388
LP++NK++ + Y+ GDW
Sbjct: 358 LPVYNKSAWRHYQTIQEAGDW 378
Score = 92.4 bits (228), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 39/63 (61%), Positives = 52/63 (82%)
Query: 420 VPLAGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLKALSNEANELLPIFNKTSSK 479
PLAG+GYGLPISRLYA+YF GD+ L S +G GTDA+IYLKALS ++ E LP++NK++ +
Sbjct: 308 TPLAGFGYGLPISRLYAKYFQGDLQLFSMEGFGTDAVIYLKALSTDSVERLPVYNKSAWR 367
Query: 480 FYR 482
Y+
Sbjct: 368 HYQ 370
>pdb|1JM6|A Chain A, Pyruvate Dehydrogenase Kinase, Isozyme 2, Containing Adp
pdb|1JM6|B Chain B, Pyruvate Dehydrogenase Kinase, Isozyme 2, Containing Adp
pdb|3CRK|A Chain A, Crystal Structure Of The Pdhk2-L2 Complex.
pdb|3CRK|B Chain B, Crystal Structure Of The Pdhk2-L2 Complex.
pdb|3CRL|A Chain A, Crystal Structure Of The Pdhk2-L2 Complex.
pdb|3CRL|B Chain B, Crystal Structure Of The Pdhk2-L2 Complex
Length = 407
Score = 451 bits (1159), Expect = e-127, Method: Compositional matrix adjust.
Identities = 217/381 (56%), Positives = 280/381 (73%), Gaps = 4/381 (1%)
Query: 9 ASVSKMLDFYSQFNPSPLSIKQFIDFGLS-ASEEKSFMFLRKELPVRLANIMKEIHLLPD 67
A K ++ +S+F+PSPLS+KQF+DFG S A E+ SF FLR+ELPVRLANIMKEI+LLPD
Sbjct: 14 AGAPKYIEHFSKFSPSPLSMKQFLDFGSSNACEKTSFTFLRQELPVRLANIMKEINLLPD 73
Query: 68 NLLRMPSVGLVNEWYAMSFDEILEFEKADSNSTDTLDKFCKALVKIRNRHSDVVQTMAQG 127
+L PSV LV WY S +I+EF D TL +F ALV IRNRH+DVV TMAQG
Sbjct: 74 RVLSTPSVQLVQSWYVQSLLDIMEFLDKDPEDHRTLSQFTDALVTIRNRHNDVVPTMAQG 133
Query: 128 VMELKDSHDVDHQTENSIQYFLDRFYMSRISIRMLINQHTLLFGDELTRGDSSLRHIGCI 187
V+E KD++ D + +IQYFLDRFY+SRISIRMLINQHTL+F + + + +HIG I
Sbjct: 134 VLEYKDTYGDDPVSNQNIQYFLDRFYLSRISIRMLINQHTLIF--DGSTNPAHPKHIGSI 191
Query: 188 DPQCDLIGVVKDAYENARFLCEQYYLSSPELKVTEHNEYEKGEPVRIIYVPSHLYHMLFE 247
DP C + VVKDAY+ A+ LC++YY++SP+L++ E N +P+ ++YVPSHLYHMLFE
Sbjct: 192 DPNCSVSDVVKDAYDMAKLLCDKYYMASPDLEIQEVNATNATQPIHMVYVPSHLYHMLFE 251
Query: 248 LFKNSMRATVEHHTDTDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVTDMLFHYMYSTA 307
LFKN+MRATVE H + LPPI++ V G+ED+ +KMSD+GGG+P + LF YMYSTA
Sbjct: 252 LFKNAMRATVESHESSLTLPPIKIMVALGEEDLSIKMSDRGGGVPLRKIERLFSYMYSTA 311
Query: 308 PQPSKSDAHTVPLAGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLKALSNEANEL 367
P P T PLAG+GYGLPISRLYA+YF GD+ L S +G GTDA+IYLKALS ++ E
Sbjct: 312 PTPQPGTGGT-PLAGFGYGLPISRLYAKYFQGDLQLFSMEGFGTDAVIYLKALSTDSVER 370
Query: 368 LPIFNKTSSKFYRATIPTGDW 388
LP++NK++ + Y+ GDW
Sbjct: 371 LPVYNKSAWRHYQTIQEAGDW 391
Score = 92.4 bits (228), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 39/63 (61%), Positives = 52/63 (82%)
Query: 420 VPLAGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLKALSNEANELLPIFNKTSSK 479
PLAG+GYGLPISRLYA+YF GD+ L S +G GTDA+IYLKALS ++ E LP++NK++ +
Sbjct: 321 TPLAGFGYGLPISRLYAKYFQGDLQLFSMEGFGTDAVIYLKALSTDSVERLPVYNKSAWR 380
Query: 480 FYR 482
Y+
Sbjct: 381 HYQ 383
>pdb|2ZKJ|A Chain A, Crystal Structure Of Human Pdk4-Adp Complex
pdb|2ZKJ|B Chain B, Crystal Structure Of Human Pdk4-Adp Complex
pdb|3D2R|A Chain A, Crystal Structure Of Pyruvate Dehydrogenase Kinase Isoform
4 In Complex With Adp
pdb|3D2R|B Chain B, Crystal Structure Of Pyruvate Dehydrogenase Kinase Isoform
4 In Complex With Adp
Length = 394
Score = 445 bits (1145), Expect = e-125, Method: Compositional matrix adjust.
Identities = 217/394 (55%), Positives = 280/394 (71%), Gaps = 10/394 (2%)
Query: 9 ASVSKMLDFYSQFNPSPLSIKQFIDFGL-SASEEKSFMFLRKELPVRLANIMKEIHLLPD 67
ASV + ++ +S+++PSPLS+KQ +DFG +A E SF FLR+ELPVRLANI+KEI +LP
Sbjct: 1 ASVPREVEHFSRYSPSPLSMKQLLDFGSENACERTSFAFLRQELPVRLANILKEIDILPT 60
Query: 68 NLLRMPSVGLVNEWYAMSFDEILEFEKADSNSTDTLDKFCKALVKIRNRHSDVVQTMAQG 127
L+ SV LV WY S +++EF + + L F L+K+RNRH +VV TMAQG
Sbjct: 61 QLVNTSSVQLVKSWYIQSLMDLVEFHEKSPDDQKALSDFVDTLIKVRNRHHNVVPTMAQG 120
Query: 128 VMELKDSHDVDHQTENSIQYFLDRFYMSRISIRMLINQHTLLFGDELTRGDSSLRHIGCI 187
++E KD+ VD T ++QYFLDRFYM+RIS RML+NQH L+F D T S HIG I
Sbjct: 121 IIEYKDACTVDPVTNQNLQYFLDRFYMNRISTRMLMNQHILIFSDSQTGNPS---HIGSI 177
Query: 188 DPQCDLIGVVKDAYENARFLCEQYYLSSPELKVTEHNEYEKGEPVRIIYVPSHLYHMLFE 247
DP CD++ VV+DA+E +R LC+QYYLSSPELK+T+ N +P+ I+YVPSHL+HMLFE
Sbjct: 178 DPNCDVVAVVQDAFECSRMLCDQYYLSSPELKLTQVNGKFPDQPIHIVYVPSHLHHMLFE 237
Query: 248 LFKNSMRATVEHHTDTDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVTDMLFHYMYSTA 307
LFKN+MRATVEH + L PIEV VV GKED+ +K+SD+GGG+P + D LF Y YSTA
Sbjct: 238 LFKNAMRATVEHQENQPSLTPIEVIVVLGKEDLTIKISDRGGGVPLRIIDRLFSYTYSTA 297
Query: 308 PQPSKSDAHTVPLAGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLKALSNEANEL 367
P P ++ PLAG+GYGLPISRLYA+YF GD+ L S G GTDAIIYLKALS+E+ E
Sbjct: 298 PTPVMDNSRNAPLAGFGYGLPISRLYAKYFQGDLNLYSLSGYGTDAIIYLKALSSESIEK 357
Query: 368 LPIFNKTSSKFYRATIPTGDWSSTQSACMEHRHP 401
LP+FNK++ K Y+ + DW C+ R P
Sbjct: 358 LPVFNKSAFKHYQMSSEADDW------CIPSREP 385
Score = 95.5 bits (236), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 45/75 (60%), Positives = 57/75 (76%)
Query: 408 TSSKHVPSDAHTVPLAGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLKALSNEAN 467
T+ V ++ PLAG+GYGLPISRLYA+YF GD+ L S G GTDAIIYLKALS+E+
Sbjct: 296 TAPTPVMDNSRNAPLAGFGYGLPISRLYAKYFQGDLNLYSLSGYGTDAIIYLKALSSESI 355
Query: 468 ELLPIFNKTSSKFYR 482
E LP+FNK++ K Y+
Sbjct: 356 EKLPVFNKSAFKHYQ 370
>pdb|2E0A|A Chain A, Crystal Structure Of Human Pyruvate Dehydrogenase Kinase 4
In Complex With Amppnp
pdb|2E0A|B Chain B, Crystal Structure Of Human Pyruvate Dehydrogenase Kinase 4
In Complex With Amppnp
pdb|2ZDX|A Chain A, Inhibitor-Bound Structures Of Human Pyruvate Dehydrogenase
Kinase 4
pdb|2ZDX|B Chain B, Inhibitor-Bound Structures Of Human Pyruvate Dehydrogenase
Kinase 4
pdb|2ZDY|A Chain A, Inhibitor-Bound Structures Of Human Pyruvate Dehydrogenase
Kinase 4
pdb|2ZDY|B Chain B, Inhibitor-Bound Structures Of Human Pyruvate Dehydrogenase
Kinase 4
Length = 394
Score = 441 bits (1135), Expect = e-124, Method: Compositional matrix adjust.
Identities = 215/392 (54%), Positives = 278/392 (70%), Gaps = 10/392 (2%)
Query: 11 VSKMLDFYSQFNPSPLSIKQFIDFGL-SASEEKSFMFLRKELPVRLANIMKEIHLLPDNL 69
V + ++ +S+++PSPLS+KQ +DFG +A E SF FLR+ELPVRLANI+KEI +LP L
Sbjct: 3 VPREVEHFSRYSPSPLSMKQLLDFGSENACERTSFAFLRQELPVRLANILKEIDILPTQL 62
Query: 70 LRMPSVGLVNEWYAMSFDEILEFEKADSNSTDTLDKFCKALVKIRNRHSDVVQTMAQGVM 129
+ SV LV WY S +++EF + + L F L+K+RNRH +VV TMAQG++
Sbjct: 63 VNTSSVQLVKSWYIQSLMDLVEFHEKSPDDQKALSDFVDTLIKVRNRHHNVVPTMAQGII 122
Query: 130 ELKDSHDVDHQTENSIQYFLDRFYMSRISIRMLINQHTLLFGDELTRGDSSLRHIGCIDP 189
E KD+ VD T ++QYFLDRFYM+RIS RML+NQH L+F D T S HIG IDP
Sbjct: 123 EYKDACTVDPVTNQNLQYFLDRFYMNRISTRMLMNQHILIFSDSQTGNPS---HIGSIDP 179
Query: 190 QCDLIGVVKDAYENARFLCEQYYLSSPELKVTEHNEYEKGEPVRIIYVPSHLYHMLFELF 249
CD++ VV+DA+E +R LC+QYYLSSPELK+T+ N +P+ I+YVPSHL+HMLFELF
Sbjct: 180 NCDVVAVVQDAFECSRMLCDQYYLSSPELKLTQVNGKFPDQPIHIVYVPSHLHHMLFELF 239
Query: 250 KNSMRATVEHHTDTDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVTDMLFHYMYSTAPQ 309
KN+MRATVEH + L PIEV VV GKED+ +K+SD+GGG+P + D LF Y YSTAP
Sbjct: 240 KNAMRATVEHQENQPSLTPIEVIVVLGKEDLTIKISDRGGGVPLRIIDRLFSYTYSTAPT 299
Query: 310 PSKSDAHTVPLAGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLKALSNEANELLP 369
P ++ PLAG+GYGLPISRLYA+YF GD+ L S G GTDAIIYLKALS+E+ E LP
Sbjct: 300 PVMDNSRNAPLAGFGYGLPISRLYAKYFQGDLNLYSLSGYGTDAIIYLKALSSESIEKLP 359
Query: 370 IFNKTSSKFYRATIPTGDWSSTQSACMEHRHP 401
+FNK++ K Y+ + DW C+ R P
Sbjct: 360 VFNKSAFKHYQMSSEADDW------CIPSREP 385
Score = 95.5 bits (236), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 45/75 (60%), Positives = 57/75 (76%)
Query: 408 TSSKHVPSDAHTVPLAGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLKALSNEAN 467
T+ V ++ PLAG+GYGLPISRLYA+YF GD+ L S G GTDAIIYLKALS+E+
Sbjct: 296 TAPTPVMDNSRNAPLAGFGYGLPISRLYAKYFQGDLNLYSLSGYGTDAIIYLKALSSESI 355
Query: 468 ELLPIFNKTSSKFYR 482
E LP+FNK++ K Y+
Sbjct: 356 EKLPVFNKSAFKHYQ 370
>pdb|3TZ0|A Chain A, Crystal Structure Of Branched-Chain Alpha-Ketoacid
Dehydrogenase KinaseS-Alpha-Chloroisocaproate Complex
pdb|3TZ2|A Chain A, Crystal Structure Of Branched-Chain Alpha-Ketoacid
Dehydrogenase KinasePHENYLBUTYRATE COMPLEX
pdb|3TZ4|A Chain A, Crystal Structure Of Branched-Chain Alpha-Ketoacid
Dehydrogenase KinaseS-Alpha-Chloroisocaproate Complex
With Adp
pdb|3TZ5|A Chain A, Crystal Structure Of Branched-Chain Alpha-Ketoacid
Dehydrogenase KinasePHENYLBUTYRATE COMPLEX WITH ADP
Length = 418
Score = 156 bits (395), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 100/332 (30%), Positives = 172/332 (51%), Gaps = 34/332 (10%)
Query: 42 KSFMFLRKELPVRLANIMKEIHLLPDNLLRMPSVGLVNEWYAMSFDEILEFEKADSNSTD 101
KS +L++ELPVR+A+ +K LP + P++ V+E Y +F ++ +F + +
Sbjct: 89 KSGRYLQQELPVRIAHRIKGFRSLPFIIGCNPTILHVHELYIRAFQKLTDFPPIKDQADE 148
Query: 102 TLDKFCKALVKIRNRHSDVVQTMAQGVMELKDSHDVDHQTENSIQYFLDRFYMSRISIRM 161
++C+ + ++ + H DVV +A+G+ E + H D E ++YFLD+ SR+ IRM
Sbjct: 149 A--QYCQLVRQLLDDHKDVVTLLAEGLRESR-KHIED---EKLVRYFLDKTLTSRLGIRM 202
Query: 162 LINQHTLLFGDELTRGDSSLRHIGCIDPQCDLIGVVKDAYENARFLCEQYYLSSPELKVT 221
L H L D+ +G I + +++ + AR LCE Y ++P +++
Sbjct: 203 LATHHLALHEDKPD-------FVGIICTRLSPKKIIEKWVDFARRLCEHKYGNAPRVRIN 255
Query: 222 EHNEYEKGEPVRIIYVPSHLYHMLFELFKNSMRATVEHHTDTDV-LPPIEVSVVRGKEDI 280
H R ++P L ++L EL KN+MRAT+E H DT +P + +++ D+
Sbjct: 256 GHVA------ARFPFIPMPLDYILPELLKNAMRATMESHLDTPYNVPDVVITIANNDVDL 309
Query: 281 CVKMSDKGGGIPRSVTDMLFHYMYSTAPQPSK--------------SDAHTVPLAGYGYG 326
+++SD+GGGI D + Y ++TA ++ S + P+ G+G+G
Sbjct: 310 IIRISDRGGGIAHKDLDRVMDYHFTTAEASTQDPRISPLFGHLDMHSGGQSGPMHGFGFG 369
Query: 327 LPISRLYARYFHGDIMLLSCDGLGTDAIIYLK 358
LP SR YA Y G + L S G+GTD + L+
Sbjct: 370 LPTSRAYAEYLGGSLQLQSLQGIGTDVYLRLR 401
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 28/46 (60%)
Query: 415 SDAHTVPLAGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLK 460
S + P+ G+G+GLP SR YA Y G + L S G+GTD + L+
Sbjct: 356 SGGQSGPMHGFGFGLPTSRAYAEYLGGSLQLQSLQGIGTDVYLRLR 401
>pdb|1GJV|A Chain A, Branched-chain Alpha-ketoacid Dehydrogenase Kinase (bck)
Complxed With Atp-gamma-s
pdb|1GKX|A Chain A, Branched-Chain Alpha-Ketoacid Dehydrogenase Kinase (Bck)
pdb|1GKZ|A Chain A, Branched-Chain Alpha-Ketoacid Dehydrogenase Kinase (Bck)
Complxed With Adp
Length = 388
Score = 156 bits (394), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 100/332 (30%), Positives = 172/332 (51%), Gaps = 34/332 (10%)
Query: 42 KSFMFLRKELPVRLANIMKEIHLLPDNLLRMPSVGLVNEWYAMSFDEILEFEKADSNSTD 101
KS +L++ELPVR+A+ +K LP + P++ V+E Y +F ++ +F + +
Sbjct: 59 KSGRYLQQELPVRIAHRIKGFRSLPFIIGCNPTILHVHELYIRAFQKLTDFPPIKDQADE 118
Query: 102 TLDKFCKALVKIRNRHSDVVQTMAQGVMELKDSHDVDHQTENSIQYFLDRFYMSRISIRM 161
++C+ + ++ + H DVV +A+G+ E + H D E ++YFLD+ SR+ IRM
Sbjct: 119 A--QYCQLVRQLLDDHKDVVTLLAEGLRESR-KHIED---EKLVRYFLDKTLTSRLGIRM 172
Query: 162 LINQHTLLFGDELTRGDSSLRHIGCIDPQCDLIGVVKDAYENARFLCEQYYLSSPELKVT 221
L H L D+ +G I + +++ + AR LCE Y ++P +++
Sbjct: 173 LATHHLALHEDKPD-------FVGIICTRLSPKKIIEKWVDFARRLCEHKYGNAPRVRIN 225
Query: 222 EHNEYEKGEPVRIIYVPSHLYHMLFELFKNSMRATVEHHTDTDV-LPPIEVSVVRGKEDI 280
H R ++P L ++L EL KN+MRAT+E H DT +P + +++ D+
Sbjct: 226 GHVA------ARFPFIPMPLDYILPELLKNAMRATMESHLDTPYNVPDVVITIANNDVDL 279
Query: 281 CVKMSDKGGGIPRSVTDMLFHYMYSTAPQPSK--------------SDAHTVPLAGYGYG 326
+++SD+GGGI D + Y ++TA ++ S + P+ G+G+G
Sbjct: 280 IIRISDRGGGIAHKDLDRVMDYHFTTAEASTQDPRISPLFGHLDMHSGGQSGPMHGFGFG 339
Query: 327 LPISRLYARYFHGDIMLLSCDGLGTDAIIYLK 358
LP SR YA Y G + L S G+GTD + L+
Sbjct: 340 LPTSRAYAEYLGGSLQLQSLQGIGTDVYLRLR 371
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 28/46 (60%)
Query: 415 SDAHTVPLAGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLK 460
S + P+ G+G+GLP SR YA Y G + L S G+GTD + L+
Sbjct: 326 SGGQSGPMHGFGFGLPTSRAYAEYLGGSLQLQSLQGIGTDVYLRLR 371
>pdb|3VAD|A Chain A, Crystal Structure Of I170f Mutant Branched-chain
Alpha-ketoacid Dehydrogenase Kinase In Complex With
3,6-dichlorobenzo[b]thiophene-2- Carboxylic Acid
Length = 418
Score = 155 bits (391), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 99/332 (29%), Positives = 171/332 (51%), Gaps = 34/332 (10%)
Query: 42 KSFMFLRKELPVRLANIMKEIHLLPDNLLRMPSVGLVNEWYAMSFDEILEFEKADSNSTD 101
KS +L++ELPVR+A+ +K LP + P++ V+E Y +F ++ +F + +
Sbjct: 89 KSGRYLQQELPVRIAHRIKGFRSLPFIIGCNPTILHVHELYIRAFQKLTDFPPIKDQADE 148
Query: 102 TLDKFCKALVKIRNRHSDVVQTMAQGVMELKDSHDVDHQTENSIQYFLDRFYMSRISIRM 161
++C+ + ++ + H DVV +A+G+ E + H D E ++YFLD+ SR+ RM
Sbjct: 149 A--QYCQLVRQLLDDHKDVVTLLAEGLRESR-KHIED---EKLVRYFLDKTLTSRLGFRM 202
Query: 162 LINQHTLLFGDELTRGDSSLRHIGCIDPQCDLIGVVKDAYENARFLCEQYYLSSPELKVT 221
L H L D+ +G I + +++ + AR LCE Y ++P +++
Sbjct: 203 LATHHLALHEDKPD-------FVGIICTRLSPKKIIEKWVDFARRLCEHKYGNAPRVRIN 255
Query: 222 EHNEYEKGEPVRIIYVPSHLYHMLFELFKNSMRATVEHHTDTDV-LPPIEVSVVRGKEDI 280
H R ++P L ++L EL KN+MRAT+E H DT +P + +++ D+
Sbjct: 256 GHVA------ARFPFIPMPLDYILPELLKNAMRATMESHLDTPYNVPDVVITIANNDVDL 309
Query: 281 CVKMSDKGGGIPRSVTDMLFHYMYSTAPQPSK--------------SDAHTVPLAGYGYG 326
+++SD+GGGI D + Y ++TA ++ S + P+ G+G+G
Sbjct: 310 IIRISDRGGGIAHKDLDRVMDYHFTTAEASTQDPRISPLFGHLDMHSGGQSGPMHGFGFG 369
Query: 327 LPISRLYARYFHGDIMLLSCDGLGTDAIIYLK 358
LP SR YA Y G + L S G+GTD + L+
Sbjct: 370 LPTSRAYAEYLGGSLQLQSLQGIGTDVYLRLR 401
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 28/46 (60%)
Query: 415 SDAHTVPLAGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLK 460
S + P+ G+G+GLP SR YA Y G + L S G+GTD + L+
Sbjct: 356 SGGQSGPMHGFGFGLPTSRAYAEYLGGSLQLQSLQGIGTDVYLRLR 401
>pdb|3SL2|A Chain A, Atp Forms A Stable Complex With The Essential Histidine
Kinase Walk (yycg) Domain
Length = 177
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 60/138 (43%), Gaps = 14/138 (10%)
Query: 217 ELKVTEHNEYEKGEPVRIIYVP---SHLYHMLFELFKNSMRATVEHHTDTDVLPPIEVSV 273
E+ +H E+ + P R +YV + +L + N+++ + E T + V
Sbjct: 17 EMTKEQHVEFIRNLPDRDLYVEIDQDKITQVLDNIISNALKYSPEGGHVT-----FSIDV 71
Query: 274 VRGKEDICVKMSDKGGGIPRSVTDMLFHYMYSTAPQPSKSDAHTVPLAGYGYGLPISRLY 333
+E + + + D+G GIP+ + +F Y A T L G G GL I++
Sbjct: 72 NEEEELLYISVKDEGIGIPKKDVEKVFDRFYRV------DKARTRKLGGTGLGLAIAKEM 125
Query: 334 ARYFHGDIMLLSCDGLGT 351
+ GDI S +G GT
Sbjct: 126 VQAHGGDIWADSIEGKGT 143
>pdb|2C2A|A Chain A, Structure Of The Entire Cytoplasmic Portion Of A Sensor
Histidine Kinase Protein
Length = 258
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 54/129 (41%), Gaps = 14/129 (10%)
Query: 231 PVRIIYVPSHLYHMLFELFKNSMRATVEHHTDTDVLPPIEVSVVRGKED--ICVKMSDKG 288
PV P+ + +L L N ++ ++ D P V V+ ++D + + + D G
Sbjct: 129 PVEAYIDPTRIRQVLLNLLNNGVK-----YSKKDA-PDKYVKVILDEKDGGVLIIVEDNG 182
Query: 289 GGIPRSVTDMLFHYMYSTAPQPSKSDAHTVPLAGYGYGLPISRLYARYFHGDIMLLSCDG 348
GIP D +F Y S + VP G G GL I++ G I + S G
Sbjct: 183 IGIPDHAKDRIFEQFYRV----DSSLTYEVP--GTGLGLAITKEIVELHGGRIWVESEVG 236
Query: 349 LGTDAIIYL 357
G+ +++
Sbjct: 237 KGSRFFVWI 245
>pdb|3DGE|A Chain A, Structure Of A Histidine Kinase-response Regulator Complex
Reveals Insights Into Two-component Signaling And A
Novel Cis- Autophosphorylation Mechanism
pdb|3DGE|B Chain B, Structure Of A Histidine Kinase-response Regulator Complex
Reveals Insights Into Two-component Signaling And A
Novel Cis- Autophosphorylation Mechanism
Length = 258
Score = 36.6 bits (83), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 54/129 (41%), Gaps = 14/129 (10%)
Query: 231 PVRIIYVPSHLYHMLFELFKNSMRATVEHHTDTDVLPPIEVSVVRGKED--ICVKMSDKG 288
PV P+ + +L L N ++ ++ D P V V+ ++D + + + D G
Sbjct: 129 PVEAYIDPTRIRQVLLNLLNNGVK-----YSKKDA-PDKYVKVILDEKDGGVLIIVEDNG 182
Query: 289 GGIPRSVTDMLFHYMYSTAPQPSKSDAHTVPLAGYGYGLPISRLYARYFHGDIMLLSCDG 348
GIP D +F Y S + VP G G GL I++ G I + S G
Sbjct: 183 IGIPDHAKDRIFEQFYRV----DSSLTYEVP--GTGLGLAITKEIVELHGGRIWVESEVG 236
Query: 349 LGTDAIIYL 357
G+ +++
Sbjct: 237 KGSRFFVWI 245
>pdb|2L7E|A Chain A, The Structure Of A Domain From Yeast
Length = 131
Score = 32.3 bits (72), Expect = 0.58, Method: Composition-based stats.
Identities = 17/64 (26%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 250 KNSMRATVEHHTDTDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVTDMLFHYMYSTAPQ 309
K ++R + H +V PP+E VR V + D+G IP ++ D + ++++ T
Sbjct: 6 KRTIRIKTQQHILPEV-PPVENFPVRQWSIEIVLLDDEGKEIPATIFDKVIYHLHPTFAN 64
Query: 310 PSKS 313
P+++
Sbjct: 65 PNRT 68
>pdb|3QRL|A Chain A, Crystal Structure Of The Taf14 Yeats Domain
Length = 140
Score = 32.3 bits (72), Expect = 0.60, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 243 HMLFELFKNSMRATVEHHTDTDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVTDMLFHY 302
HM+ + K ++R + H +V PP+E VR V + D+G IP ++ D + ++
Sbjct: 3 HMVATV-KRTIRIKTQQHILPEV-PPVENFPVRQWSIEIVLLDDEGKEIPATIFDKVIYH 60
Query: 303 MYSTAPQPSKS 313
++ T P+++
Sbjct: 61 LHPTFANPNRT 71
>pdb|2WB3|A Chain A, The Partial Structure Of A Group A Streptococcal Phage-
Encoded Tail Fibre Hyaluronate Lyase Hylp3
Length = 157
Score = 32.3 bits (72), Expect = 0.66, Method: Composition-based stats.
Identities = 26/77 (33%), Positives = 37/77 (48%), Gaps = 5/77 (6%)
Query: 340 DIMLLSCDGLGTDAI-IYLKALSNEANELLPIFNKTSSKFYRATIPTGDWSSTQSACMEH 398
DI+ G GT A IY+ + S A ++L I NK KFY P GD+ S S+ ++
Sbjct: 67 DIVKKQKGGKGTAAQGIYINSTSGTAGKMLRIRNKNKDKFYVG--PDGDFWSCASSIVDG 124
Query: 399 RHPTISQSKTSSKHVPS 415
+ TS KH +
Sbjct: 125 N--LTVKDPTSGKHAAT 139
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,286,419
Number of Sequences: 62578
Number of extensions: 599752
Number of successful extensions: 1450
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1396
Number of HSP's gapped (non-prelim): 32
length of query: 482
length of database: 14,973,337
effective HSP length: 103
effective length of query: 379
effective length of database: 8,527,803
effective search space: 3232037337
effective search space used: 3232037337
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)