Query psy14548
Match_columns 482
No_of_seqs 572 out of 4241
Neff 8.1
Searched_HMMs 46136
Date Fri Aug 16 22:41:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14548.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14548hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0787|consensus 100.0 2.2E-72 4.8E-77 542.4 37.7 371 11-392 38-413 (414)
2 PF10436 BCDHK_Adom3: Mitochon 100.0 7.3E-33 1.6E-37 249.7 16.3 161 24-189 1-164 (164)
3 COG5002 VicK Signal transducti 100.0 3E-32 6.4E-37 261.6 18.5 228 102-362 224-451 (459)
4 COG2205 KdpD Osmosensitive K+ 100.0 3.2E-29 7E-34 264.4 24.0 223 103-362 660-882 (890)
5 PRK09303 adaptive-response sen 100.0 8.6E-28 1.9E-32 247.6 26.4 230 100-360 148-378 (380)
6 PRK10618 phosphotransfer inter 100.0 4.5E-27 9.7E-32 263.3 24.7 224 101-361 448-674 (894)
7 COG4191 Signal transduction hi 99.9 1.6E-25 3.5E-30 230.0 29.4 270 45-360 330-602 (603)
8 PRK11006 phoR phosphate regulo 99.9 6.8E-26 1.5E-30 237.2 26.4 222 102-360 203-424 (430)
9 PRK11091 aerobic respiration c 99.9 6.4E-26 1.4E-30 254.5 25.2 225 103-362 283-508 (779)
10 PRK10841 hybrid sensory kinase 99.9 7.2E-26 1.6E-30 256.5 25.8 225 101-361 445-669 (924)
11 PRK10815 sensor protein PhoQ; 99.9 9.6E-25 2.1E-29 231.7 29.5 258 55-361 222-480 (485)
12 TIGR02956 TMAO_torS TMAO reduc 99.9 2.5E-25 5.4E-30 255.3 25.8 224 101-362 462-686 (968)
13 PRK15347 two component system 99.9 3E-25 6.4E-30 253.3 26.0 219 103-361 398-616 (921)
14 PRK10604 sensor protein RstB; 99.9 7.8E-25 1.7E-29 229.5 27.0 232 82-361 194-425 (433)
15 TIGR02938 nifL_nitrog nitrogen 99.9 1E-24 2.2E-29 230.3 27.1 219 103-359 276-494 (494)
16 PRK11107 hybrid sensory histid 99.9 1E-24 2.2E-29 248.9 25.0 223 103-361 293-520 (919)
17 PRK11466 hybrid sensory histid 99.9 1.7E-24 3.8E-29 246.9 25.5 222 102-361 443-664 (914)
18 PRK13837 two-component VirA-li 99.9 4.4E-24 9.4E-29 240.8 28.0 214 102-361 449-677 (828)
19 PRK10755 sensor protein BasS/P 99.9 1.1E-23 2.4E-28 214.8 28.0 216 101-361 135-352 (356)
20 PRK10549 signal transduction h 99.9 1.1E-23 2.3E-28 222.3 28.7 240 81-361 221-460 (466)
21 PRK10364 sensor protein ZraS; 99.9 8.7E-24 1.9E-28 223.0 27.6 215 102-361 236-450 (457)
22 PRK10490 sensor protein KdpD; 99.9 5.7E-24 1.2E-28 240.1 27.2 221 103-361 664-884 (895)
23 TIGR03785 marine_sort_HK prote 99.9 1.7E-23 3.8E-28 230.9 29.0 236 82-358 467-703 (703)
24 TIGR01386 cztS_silS_copS heavy 99.9 2.1E-23 4.6E-28 218.9 28.3 236 81-358 222-457 (457)
25 COG4251 Bacteriophytochrome (l 99.9 6.8E-24 1.5E-28 217.7 22.8 225 99-362 520-744 (750)
26 PRK09835 sensor kinase CusS; P 99.9 7.3E-23 1.6E-27 216.8 29.1 238 82-360 244-481 (482)
27 PRK10337 sensor protein QseC; 99.9 8.8E-23 1.9E-27 214.5 27.3 231 82-357 219-449 (449)
28 PRK09959 hybrid sensory histid 99.9 3.9E-23 8.5E-28 242.1 23.6 223 102-361 711-938 (1197)
29 PRK09467 envZ osmolarity senso 99.9 1.8E-22 3.9E-27 211.2 26.1 224 82-360 211-434 (435)
30 PRK11100 sensory histidine kin 99.9 5.4E-22 1.2E-26 209.2 29.4 236 82-360 239-474 (475)
31 PRK09470 cpxA two-component se 99.9 7.1E-22 1.5E-26 207.9 29.0 234 82-360 225-458 (461)
32 COG3852 NtrB Signal transducti 99.9 2.9E-22 6.3E-27 190.5 23.1 216 102-361 131-356 (363)
33 TIGR02966 phoR_proteo phosphat 99.9 5.7E-22 1.2E-26 198.5 25.3 220 103-357 114-333 (333)
34 TIGR02916 PEP_his_kin putative 99.9 5.6E-22 1.2E-26 219.2 26.4 205 102-358 474-679 (679)
35 COG5000 NtrY Signal transducti 99.9 6.8E-22 1.5E-26 202.7 24.2 222 102-359 485-708 (712)
36 PRK11073 glnL nitrogen regulat 99.9 1.6E-21 3.4E-26 198.1 24.8 209 102-359 129-347 (348)
37 PRK13557 histidine kinase; Pro 99.9 7.7E-21 1.7E-25 203.6 27.8 220 102-361 162-396 (540)
38 PRK11360 sensory histidine kin 99.9 1.3E-20 2.7E-25 203.9 27.1 212 104-361 391-603 (607)
39 COG0642 BaeS Signal transducti 99.9 9.3E-20 2E-24 180.7 25.4 218 103-362 115-332 (336)
40 PF02518 HATPase_c: Histidine 99.8 2.4E-20 5.1E-25 158.1 13.1 110 236-359 1-110 (111)
41 PRK15053 dpiB sensor histidine 99.8 7.2E-19 1.6E-23 189.5 23.7 117 232-360 424-540 (545)
42 PRK11086 sensory histidine kin 99.8 2E-18 4.3E-23 185.4 23.9 108 237-361 430-537 (542)
43 PRK13560 hypothetical protein; 99.8 1.7E-18 3.8E-23 194.4 21.8 201 102-361 604-805 (807)
44 KOG0787|consensus 99.8 2.5E-20 5.5E-25 181.4 4.3 186 238-482 215-401 (414)
45 COG3290 CitA Signal transducti 99.8 2.3E-17 5E-22 169.2 22.0 207 101-362 328-534 (537)
46 PRK11644 sensory histidine kin 99.8 7E-17 1.5E-21 171.9 23.7 193 103-359 302-494 (495)
47 COG4192 Signal transduction hi 99.8 2.6E-16 5.7E-21 156.6 24.0 216 103-360 451-667 (673)
48 PRK10547 chemotaxis protein Ch 99.7 1.8E-15 4E-20 163.8 20.6 152 192-360 344-524 (670)
49 PRK10935 nitrate/nitrite senso 99.6 2E-14 4.4E-19 155.5 23.7 196 107-360 364-560 (565)
50 PRK13559 hypothetical protein; 99.6 1.3E-14 2.7E-19 148.3 19.8 187 102-359 169-359 (361)
51 PRK10600 nitrate/nitrite senso 99.6 5.9E-14 1.3E-18 152.3 22.2 162 143-360 396-557 (569)
52 PRK04184 DNA topoisomerase VI 99.6 3.7E-14 8E-19 148.8 13.9 120 233-360 29-153 (535)
53 smart00387 HATPase_c Histidine 99.5 2.6E-13 5.6E-18 112.6 13.7 110 236-359 1-110 (111)
54 COG0643 CheA Chemotaxis protei 99.5 1.5E-12 3.3E-17 141.9 19.9 151 192-359 391-573 (716)
55 TIGR01052 top6b DNA topoisomer 99.4 2.2E-12 4.8E-17 134.2 13.3 113 232-353 20-134 (488)
56 cd00075 HATPase_c Histidine ki 99.4 6.9E-12 1.5E-16 102.3 12.4 103 241-357 1-103 (103)
57 PRK14868 DNA topoisomerase VI 99.4 6.6E-12 1.4E-16 134.6 13.5 109 233-349 39-148 (795)
58 TIGR01925 spIIAB anti-sigma F 99.3 2E-11 4.4E-16 107.3 12.1 102 236-357 35-136 (137)
59 PRK14867 DNA topoisomerase VI 99.3 1.9E-11 4.2E-16 130.8 14.1 116 238-361 34-151 (659)
60 COG3850 NarQ Signal transducti 99.3 6E-10 1.3E-14 114.3 22.6 125 192-359 443-568 (574)
61 COG4585 Signal transduction hi 99.3 8.8E-10 1.9E-14 113.1 22.6 91 236-359 275-365 (365)
62 PRK03660 anti-sigma F factor; 99.2 1.8E-10 4E-15 102.3 13.6 106 236-361 35-140 (146)
63 COG1389 DNA topoisomerase VI, 99.2 2E-10 4.4E-15 115.3 11.8 168 235-411 31-208 (538)
64 COG3920 Signal transduction hi 99.1 5.1E-08 1.1E-12 92.7 24.0 133 191-361 81-217 (221)
65 PRK04069 serine-protein kinase 99.1 2.7E-09 5.9E-14 96.6 13.3 105 237-359 39-143 (161)
66 COG3851 UhpB Signal transducti 99.0 3.7E-08 8E-13 96.5 21.0 125 190-358 369-493 (497)
67 TIGR01924 rsbW_low_gc serine-p 98.9 2.2E-08 4.7E-13 90.5 12.6 102 239-358 41-142 (159)
68 PF14501 HATPase_c_5: GHKL dom 98.8 1.7E-07 3.7E-12 77.7 13.3 99 237-358 2-100 (100)
69 COG2972 Predicted signal trans 98.6 8.4E-06 1.8E-10 86.3 22.0 99 242-360 352-453 (456)
70 TIGR00585 mutl DNA mismatch re 98.5 5.9E-07 1.3E-11 90.2 11.0 102 239-355 21-124 (312)
71 COG3275 LytS Putative regulato 98.5 2.8E-06 6E-11 86.5 15.6 134 191-361 417-553 (557)
72 PF13581 HATPase_c_2: Histidin 98.4 2.3E-06 5E-11 73.7 10.8 96 238-356 29-124 (125)
73 COG4564 Signal transduction hi 98.4 7.5E-05 1.6E-09 72.9 20.8 121 207-361 329-449 (459)
74 KOG0519|consensus 98.2 8.9E-07 1.9E-11 99.1 4.0 220 105-362 223-491 (786)
75 PF13589 HATPase_c_3: Histidin 98.0 5.7E-06 1.2E-10 72.8 4.8 103 242-360 4-108 (137)
76 COG2172 RsbW Anti-sigma regula 98.0 0.00011 2.4E-09 65.2 12.2 96 236-350 36-131 (146)
77 PRK00095 mutL DNA mismatch rep 97.9 5.6E-05 1.2E-09 82.7 9.8 93 240-347 22-114 (617)
78 PRK05559 DNA topoisomerase IV 97.5 0.00022 4.7E-09 78.1 7.2 106 237-358 34-148 (631)
79 TIGR01059 gyrB DNA gyrase, B s 96.8 0.0015 3.3E-08 72.0 5.7 89 238-336 28-124 (654)
80 PRK05644 gyrB DNA gyrase subun 96.8 0.0017 3.7E-08 71.2 5.7 89 238-337 35-132 (638)
81 PRK05218 heat shock protein 90 96.8 0.0047 1E-07 67.6 9.0 97 234-333 23-132 (613)
82 COG0323 MutL DNA mismatch repa 96.7 0.0029 6.3E-08 69.4 6.5 56 242-307 25-80 (638)
83 smart00433 TOP2c Topoisomerase 96.6 0.0026 5.6E-08 69.4 5.5 84 241-335 2-94 (594)
84 PF00512 HisKA: His Kinase A ( 96.6 0.0096 2.1E-07 45.1 7.1 63 103-171 2-64 (68)
85 COG0326 HtpG Molecular chapero 96.6 0.0022 4.8E-08 68.6 4.3 90 243-335 30-134 (623)
86 PRK14083 HSP90 family protein; 96.5 0.0058 1.3E-07 66.4 7.1 96 234-333 20-117 (601)
87 TIGR01055 parE_Gneg DNA topois 96.3 0.0032 7E-08 68.9 4.0 88 239-337 29-125 (625)
88 PTZ00130 heat shock protein 90 96.3 0.01 2.3E-07 65.7 7.7 114 245-358 93-241 (814)
89 PRK14939 gyrB DNA gyrase subun 95.6 0.007 1.5E-07 67.2 2.6 88 239-337 36-132 (756)
90 PTZ00272 heat shock protein 83 95.1 0.045 9.8E-07 60.5 6.8 65 234-301 22-93 (701)
91 COG5381 Uncharacterized protei 94.9 0.071 1.5E-06 46.3 6.1 55 238-300 61-115 (184)
92 TIGR01058 parE_Gpos DNA topois 94.7 0.019 4E-07 63.0 2.6 89 238-337 32-129 (637)
93 KOG1979|consensus 94.3 0.041 8.8E-07 58.0 3.8 55 243-307 30-84 (694)
94 PLN03237 DNA topoisomerase 2; 93.0 0.2 4.4E-06 59.0 6.9 106 240-358 77-192 (1465)
95 PHA02569 39 DNA topoisomerase 92.6 0.057 1.2E-06 58.9 1.7 90 240-338 45-145 (602)
96 COG0187 GyrB Type IIA topoisom 91.6 0.032 6.9E-07 59.7 -1.7 89 239-337 35-131 (635)
97 PTZ00108 DNA topoisomerase 2-l 91.5 0.16 3.6E-06 59.8 3.8 109 240-358 57-175 (1388)
98 KOG1977|consensus 91.2 0.38 8.3E-06 52.0 5.8 59 239-308 20-78 (1142)
99 cd00082 HisKA Histidine Kinase 91.0 1.5 3.3E-05 31.2 7.5 62 102-170 3-64 (65)
100 TIGR02956 TMAO_torS TMAO reduc 91.0 7.5 0.00016 45.1 16.9 41 423-463 645-685 (968)
101 smart00388 HisKA His Kinase A 90.1 1.7 3.8E-05 31.1 7.2 61 103-171 2-62 (66)
102 KOG1978|consensus 89.9 0.47 1E-05 51.3 5.1 57 241-307 21-77 (672)
103 PF02518 HATPase_c: Histidine 89.6 0.23 5E-06 41.2 2.2 42 420-461 69-110 (111)
104 PLN03128 DNA topoisomerase 2; 89.1 0.41 8.8E-06 55.8 4.3 105 240-358 52-167 (1135)
105 PTZ00109 DNA gyrase subunit b; 84.5 0.17 3.7E-06 56.8 -1.9 52 238-297 127-178 (903)
106 PRK09303 adaptive-response sen 84.3 52 0.0011 33.7 23.9 39 423-461 339-377 (380)
107 KOG0020|consensus 76.5 3.8 8.1E-05 42.8 4.7 56 243-298 98-160 (785)
108 COG0642 BaeS Signal transducti 75.5 2.4 5.3E-05 41.1 3.1 42 424-465 292-333 (336)
109 KOG0019|consensus 74.3 5 0.00011 43.1 5.1 95 242-336 59-163 (656)
110 TIGR02938 nifL_nitrog nitrogen 67.5 4.1 8.9E-05 42.6 2.8 39 422-460 455-493 (494)
111 PF10090 DUF2328: Uncharacteri 66.1 1.1E+02 0.0024 28.1 12.9 91 238-345 83-173 (182)
112 PF08635 ox_reductase_C: Putat 65.3 2.7 5.8E-05 36.1 0.7 46 435-480 59-112 (142)
113 PRK11100 sensory histidine kin 63.8 4.8 0.0001 42.1 2.4 39 423-461 435-473 (475)
114 PRK10755 sensor protein BasS/P 59.3 6.9 0.00015 39.5 2.6 41 423-463 311-352 (356)
115 KOG0355|consensus 58.9 17 0.00038 40.6 5.6 51 239-296 52-102 (842)
116 PRK15347 two component system 58.6 7.6 0.00016 44.7 3.1 41 423-463 576-616 (921)
117 PRK10618 phosphotransfer inter 58.6 6.7 0.00015 45.3 2.6 40 423-462 634-673 (894)
118 PRK11006 phoR phosphate regulo 57.5 7 0.00015 40.8 2.3 39 423-461 385-423 (430)
119 PRK10815 sensor protein PhoQ; 55.7 9.2 0.0002 40.8 2.9 43 423-465 440-482 (485)
120 COG4574 Eco Serine protease in 54.4 8.2 0.00018 33.1 1.7 32 429-461 66-97 (162)
121 TIGR01386 cztS_silS_copS heavy 52.5 9.8 0.00021 39.5 2.5 38 422-460 420-457 (457)
122 PRK10364 sensor protein ZraS; 51.9 13 0.00028 39.0 3.3 40 424-463 411-450 (457)
123 COG3852 NtrB Signal transducti 51.2 47 0.001 33.2 6.6 40 423-463 317-356 (363)
124 smart00387 HATPase_c Histidine 50.7 14 0.00031 29.0 2.7 39 422-460 71-109 (111)
125 PRK11086 sensory histidine kin 50.0 12 0.00026 39.9 2.8 41 423-463 497-537 (542)
126 PRK11360 sensory histidine kin 49.8 12 0.00025 40.2 2.6 41 423-463 563-603 (607)
127 PRK13557 histidine kinase; Pro 48.0 14 0.0003 39.3 2.8 40 423-462 356-395 (540)
128 PRK11466 hybrid sensory histid 46.5 14 0.00031 42.5 2.8 40 423-462 624-663 (914)
129 PRK13837 two-component VirA-li 46.5 13 0.00029 42.5 2.5 41 423-463 637-677 (828)
130 PRK11073 glnL nitrogen regulat 45.9 16 0.00034 36.6 2.7 37 423-460 310-346 (348)
131 PRK15053 dpiB sensor histidine 45.6 15 0.00032 39.5 2.6 40 423-462 501-540 (545)
132 PRK09470 cpxA two-component se 45.1 14 0.00031 38.4 2.3 39 423-461 419-457 (461)
133 TIGR02916 PEP_his_kin putative 44.0 15 0.00032 41.1 2.3 38 423-460 642-679 (679)
134 COG4191 Signal transduction hi 43.8 17 0.00037 39.2 2.6 41 422-462 562-602 (603)
135 PRK11107 hybrid sensory histid 41.8 17 0.00038 41.8 2.5 41 422-462 479-519 (919)
136 PRK10604 sensor protein RstB; 41.7 19 0.00042 37.6 2.6 41 423-463 385-425 (433)
137 PRK11091 aerobic respiration c 40.4 18 0.00039 41.0 2.3 42 422-463 466-507 (779)
138 PRK10841 hybrid sensory kinase 39.5 23 0.0005 41.1 3.0 41 423-463 629-669 (924)
139 TIGR02966 phoR_proteo phosphat 38.1 24 0.00051 34.5 2.5 37 423-459 297-333 (333)
140 PRK09467 envZ osmolarity senso 35.7 24 0.00052 36.5 2.2 38 423-460 395-432 (435)
141 PRK11644 sensory histidine kin 35.6 29 0.00062 37.2 2.8 35 425-461 460-494 (495)
142 TIGR03785 marine_sort_HK prote 33.8 26 0.00057 39.4 2.2 37 424-460 666-703 (703)
143 PRK10600 nitrate/nitrite senso 33.6 33 0.0007 37.3 2.9 38 424-461 519-556 (569)
144 PRK10547 chemotaxis protein Ch 33.4 43 0.00094 37.3 3.8 41 421-461 483-523 (670)
145 PRK10490 sensor protein KdpD; 33.1 31 0.00068 40.0 2.7 40 423-462 844-883 (895)
146 COG5002 VicK Signal transducti 33.0 34 0.00074 34.7 2.6 46 419-464 406-451 (459)
147 COG0813 DeoD Purine-nucleoside 31.6 50 0.0011 31.2 3.3 53 232-293 17-69 (236)
148 PRK10935 nitrate/nitrite senso 31.3 38 0.00082 36.5 2.9 39 424-462 522-560 (565)
149 PRK09835 sensor kinase CusS; P 30.0 36 0.00078 35.6 2.5 39 423-462 443-481 (482)
150 PRK10549 signal transduction h 27.1 47 0.001 34.7 2.6 41 423-463 420-460 (466)
151 COG0643 CheA Chemotaxis protei 27.1 59 0.0013 36.6 3.5 161 277-460 411-572 (716)
152 COG3290 CitA Signal transducti 27.0 53 0.0011 35.3 2.9 44 422-465 492-535 (537)
153 PRK09959 hybrid sensory histid 27.0 43 0.00093 40.0 2.6 39 423-461 898-936 (1197)
154 PF01106 NifU: NifU-like domai 23.7 1.3E+02 0.0029 22.7 3.9 28 330-359 8-35 (68)
155 cd00075 HATPase_c Histidine ki 23.4 79 0.0017 24.0 2.8 37 421-457 65-101 (103)
156 COG2205 KdpD Osmosensitive K+ 23.3 70 0.0015 36.2 3.1 44 422-465 840-883 (890)
157 PF07492 Trehalase_Ca-bi: Neut 23.2 62 0.0013 20.4 1.5 14 276-289 10-23 (30)
158 PRK10337 sensor protein QseC; 21.5 57 0.0012 33.9 2.0 37 423-459 413-449 (449)
159 KOG0394|consensus 20.4 2.8E+02 0.0062 25.7 5.9 62 236-307 21-82 (210)
No 1
>KOG0787|consensus
Probab=100.00 E-value=2.2e-72 Score=542.41 Aligned_cols=371 Identities=58% Similarity=0.981 Sum_probs=349.6
Q ss_pred HHHHHHHhhcCCCCcccHHHHHhcC---CCcChhhHHHHHHHHHHHHHHHHHHHHhcCChhhhcCChHHHHHHHHHHHHH
Q psy14548 11 VSKMLDFYSQFNPSPLSIKQFIDFG---LSASEEKSFMFLRKELPVRLANIMKEIHLLPDNLLRMPSVGLVNEWYAMSFD 87 (482)
Q Consensus 11 ~~~~~~~y~~~~~~~~sl~~l~~~g---~~~~~~~s~~~l~~eLp~Rla~ri~~l~~lp~~l~~~~~i~~v~~~y~~sf~ 87 (482)
+.++|++|++++|+|+|++||++|| .+.++.+|+.||++|||+|||+|+++|+.||+.+..||+|..|++||.++|+
T Consensus 38 ~~~~i~~~s~f~pspls~kq~l~fg~~~t~~~e~~S~~flr~ELpvRlA~~lkeiq~LP~nl~~npsi~~V~s~Y~~sfe 117 (414)
T KOG0787|consen 38 LPEYINPYSSFPPSPLSLKQFLDFGSDLTNACEKTSGIFLRQELPVRLANRLKEIQLLPFNLVNNPSIQLVQSWYIRSFE 117 (414)
T ss_pred hHHHhchhhcCCCCcccHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhccCchHHHHHHHHHHHHH
Confidence 7999999999999999999999999 4678899999999999999999999999999999999999999999999999
Q ss_pred HHHcccccCCCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhhHHHHHHHHH
Q psy14548 88 EILEFEKADSNSTDTLDKFCKALVKIRNRHSDVVQTMAQGVMELKDSHDVDHQTENSIQYFLDRFYMSRISIRMLINQHT 167 (482)
Q Consensus 88 ~l~~~~~~~~~~~~~~~~f~~~l~~~l~~~~~~i~~la~g~~e~~~~~~~~~~~~e~~~~~Ld~i~~sri~~r~Li~~~l 167 (482)
++++++.+.+ +.+...+|++.+..++.+|.+++.++|+|++|+++... |+.+.+.++.|||+++++||++|||++||+
T Consensus 118 ~ll~~~~~~~-~~~~~~qf~d~l~~l~~rH~dvv~~lA~Gl~E~~~~~~-dp~~~~~iqyFLdr~y~sRIsiRMLv~qh~ 195 (414)
T KOG0787|consen 118 DLLEFPTISP-DLEDLSQFNDLLNTLRNRHNDVVPTLAQGLIEYREKDG-DPVTEKNIQYFLDRFYMSRISIRMLVNQHL 195 (414)
T ss_pred HHHccCCCCc-chhhHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 9999999886 68889999999999999999999999999999999876 777789999999999999999999999999
Q ss_pred HhhccccccCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEeeccCCCCCeEEE-echhHHHHHHH
Q psy14548 168 LLFGDELTRGDSSLRHIGCIDPQCDLIGVVKDAYENARFLCEQYYLSSPELKVTEHNEYEKGEPVRII-YVPSHLYHMLF 246 (482)
Q Consensus 168 ~L~~~~~~~~~~~~~~ig~i~~~~~l~~li~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~v~-~d~~~L~~il~ 246 (482)
.|+. +..+..++++|+|+++|++.++|+++.+.++.+|+.+|..+|++.|+.+.+ ..+. +.|.+|.+++.
T Consensus 196 ~l~~---~~kp~~~~~iG~I~~~c~v~~vi~~a~e~ar~lCd~yy~~sPel~i~~~~a------~~~~vyvPshL~ymlf 266 (414)
T KOG0787|consen 196 LLFA---SGKPDHPRHIGIIDPRCSVKKVIKDASENARFLCDQYYLNSPELIIEGHNA------LSFTVYVPSHLYYMLF 266 (414)
T ss_pred heec---CCCCCCcceeeeeCCCCCHHHHHHHHHHHHHHHHHHhccCCCeeEecCccc------ccCccccchHHHHHHH
Confidence 9997 233666789999999999999999999999999999999999999987553 3344 89999999999
Q ss_pred HHHHHHHHHhhhcCCCCCC-CCCEEEEEEecCceeEEEEEEcCCCCChhhHhhhhhcccccCCCCCCCCCCCCCCCCccc
Q psy14548 247 ELFKNSMRATVEHHTDTDV-LPPIEVSVVRGKEDICVKMSDKGGGIPRSVTDMLFHYMYSTAPQPSKSDAHTVPLAGYGY 325 (482)
Q Consensus 247 NLl~NAik~t~~~~~~~~~-~p~I~v~~~~~~~~~~i~V~D~G~GI~~~~~~~if~~f~~t~~~~~~~~~~~~~~~G~GL 325 (482)
+|++||++||.+.+..+.. .|||.|.+..+++++.|+|+|.|+||+.+.++++|.+.|+|++.+..|+.+..+..|.|+
T Consensus 267 ElfKNamrATve~h~~~~~~~ppI~V~V~~gdeDl~ikISDrGGGV~~~~~drlf~Y~ySTa~~~~~d~~~~~plaGfG~ 346 (414)
T KOG0787|consen 267 ELFKNAMRATVEHHGDDGDELPPIKVTVAKGDEDLLIKISDRGGGVPHRDIDRLFSYMYSTAPAPSSDNNRTAPLAGFGF 346 (414)
T ss_pred HHHHHHHHHHHHHhccCCCCCCCeEEEEecCCcceEEEEecCCCCcChhHHHHHHhhhcccCCCCCCCCCCcCccccccc
Confidence 9999999999999877665 899999999999999999999999999999999999999999988788887899999999
Q ss_pred CHHHHHHHHHHhCCEEEEEeecCCcEEEEEEeeCCCCcccccccccccccccccccCCCCCCCcccc
Q psy14548 326 GLPISRLYARYFHGDIMLLSCDGLGTDAIIYLKALSNEANELLPIFNKTSSKFYRATIPTGDWSSTQ 392 (482)
Q Consensus 326 GL~i~r~~~~~~gG~i~v~s~~g~Gt~f~i~lp~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (482)
||+|+|.+++++||++.+.|.+|.||+++++|...+.+..|.+|++++.+|++++...++.+||.|+
T Consensus 347 GLPisrlYa~yf~Gdl~L~SleG~GTD~yI~Lk~ls~~~~e~l~i~~k~~~~~~~~~~~~~dw~~~~ 413 (414)
T KOG0787|consen 347 GLPISRLYARYFGGDLKLQSLEGIGTDVYIYLKALSMEAPESLPIYNKSAWRHYETLKEADDWSLPS 413 (414)
T ss_pred CCcHHHHHHHHhCCCeeEEeeeccccceEEEeccCCccchhhcccccccchhHHhhccccccccCCC
Confidence 9999999999999999999999999999999999999889999999999999999999999999886
No 2
>PF10436 BCDHK_Adom3: Mitochondrial branched-chain alpha-ketoacid dehydrogenase kinase; InterPro: IPR018955 Catabolism and synthesis of leucine, isoleucine and valine are finely balanced, allowing the body to make the most of dietary input but removing excesses to prevent toxic build-up of their corresponding keto-acids. Regulating the activity of the branched-chain alpha-ketoacid dehydrogenase (BCDH) complex is the primary means by which these processes are coordinated. BCDH kinase regulates BCDH by phosphorylation, thereby inactivating it when synthesis is required. Pyruvate dehydrogenase kinase inhibits the pyruvate dehydrogenase complex by phosphorylation of the E1 alpha subunit, thus contributing to the regulation of glucose metabolism. It is also involved in telomere maintenance. This entry is associated with IPR003594 from INTERPRO which is found towards the C terminus. ; PDB: 1GKX_A 1GJV_A 1GKZ_A 1JM6_B 3CRL_B 3CRK_B 1Y8O_A 2PNR_A 1Y8P_A 1Y8N_A ....
Probab=100.00 E-value=7.3e-33 Score=249.70 Aligned_cols=161 Identities=47% Similarity=0.717 Sum_probs=139.1
Q ss_pred CcccHHHHHhcCCCcCh---hhHHHHHHHHHHHHHHHHHHHHhcCChhhhcCChHHHHHHHHHHHHHHHHcccccCCCCc
Q psy14548 24 SPLSIKQFIDFGLSASE---EKSFMFLRKELPVRLANIMKEIHLLPDNLLRMPSVGLVNEWYAMSFDEILEFEKADSNST 100 (482)
Q Consensus 24 ~~~sl~~l~~~g~~~~~---~~s~~~l~~eLp~Rla~ri~~l~~lp~~l~~~~~i~~v~~~y~~sf~~l~~~~~~~~~~~ 100 (482)
+|+||+||++||++.+. .+||+|+++|||+|||+|+++|++||+++..||+|+.|++||+++|++|++++.+. +.
T Consensus 1 tplSL~~L~~fg~~~~~~~l~~sa~fl~~ELpvRlA~ri~~l~~LP~~l~~~p~i~~V~~~Y~~sF~~L~~~~~~~--~~ 78 (164)
T PF10436_consen 1 TPLSLKQLLQFGRNPTEETLLQSAQFLRRELPVRLAHRIRELQNLPYILVSNPSIQQVYEWYLQSFEELRSFPPPK--TL 78 (164)
T ss_dssp --EBHHHHHHHHCTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-HHHHTSHHHHHHHHHHHHHHHHHHTTSTTT--SC
T ss_pred CCcCHHHHHHhCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHhCChhhccChhHHHHHHHHHHHHHHHHhcCCCC--CH
Confidence 69999999999975543 46999999999999999999999999999999999999999999999999997654 66
Q ss_pred hhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhhHHHHHHHHHHhhccccccCCCC
Q psy14548 101 DTLDKFCKALVKIRNRHSDVVQTMAQGVMELKDSHDVDHQTENSIQYFLDRFYMSRISIRMLINQHTLLFGDELTRGDSS 180 (482)
Q Consensus 101 ~~~~~f~~~l~~~l~~~~~~i~~la~g~~e~~~~~~~~~~~~e~~~~~Ld~i~~sri~~r~Li~~~l~L~~~~~~~~~~~ 180 (482)
+++.+|++.+..++++|.+++.++|+|+.|+++.. .+..+.++++.|||+++++||++|+|++||++|++... .+..
T Consensus 79 ~~~~~F~~~l~~i~~~H~~vv~~lA~G~~E~~~~~-~~~~~~~~i~~fLd~f~~sRIgiR~L~~qHlaL~~~~~--~~~~ 155 (164)
T PF10436_consen 79 EDNEKFTELLERILDRHSDVVPTLAQGVLELKKYL-QSSESEEQIQSFLDRFYRSRIGIRMLAEQHLALSEQSL--NPSK 155 (164)
T ss_dssp CHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSS--SSSS
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHh-cccccHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCcc--CCCC
Confidence 66899999999999999999999999999999875 11224679999999999999999999999999986543 1334
Q ss_pred CCcccccCC
Q psy14548 181 LRHIGCIDP 189 (482)
Q Consensus 181 ~~~ig~i~~ 189 (482)
++++|+|++
T Consensus 156 ~~~vG~I~t 164 (164)
T PF10436_consen 156 PNYVGIIDT 164 (164)
T ss_dssp TTSBTTBEE
T ss_pred CCeeeeecC
Confidence 899999974
No 3
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=100.00 E-value=3e-32 Score=261.57 Aligned_cols=228 Identities=17% Similarity=0.202 Sum_probs=185.2
Q ss_pred hHHHHHHHHHHHHHhhchhHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhhHHHHHHHHHHhhccccccCCCCC
Q psy14548 102 TLDKFCKALVKIRNRHSDVVQTMAQGVMELKDSHDVDHQTENSIQYFLDRFYMSRISIRMLINQHTLLFGDELTRGDSSL 181 (482)
Q Consensus 102 ~~~~f~~~l~~~l~~~~~~i~~la~g~~e~~~~~~~~~~~~e~~~~~Ld~i~~sri~~r~Li~~~l~L~~~~~~~~~~~~ 181 (482)
+...|++.++|+|++|++.+.++.+++.+-. ..+.+-...|+..-+....++-.|++++|.|++..+.......
T Consensus 224 ErRefvanvSHElRTPltsmksyLEALe~ga------~~d~eiAp~Fl~vt~~ETeRMiRlV~DLl~lsr~d~~~~qln~ 297 (459)
T COG5002 224 ERREFVANVSHELRTPLTSMKSYLEALEEGA------WEDKEIAPRFLRVTLNETERMIRLVNDLLQLSRMDNARYQLNK 297 (459)
T ss_pred HHHHHHHhcchhhcCchHHHHHHHHHHhcCC------ccChhhhhHHHHHhHHHHHHHHHHHHHHHHHccCcchhhhhhH
Confidence 5568999999999999999877777655422 2244567789988887777777789999999987654444445
Q ss_pred CcccccCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEeeccCCCCCeEEEechhHHHHHHHHHHHHHHHHhhhcCC
Q psy14548 182 RHIGCIDPQCDLIGVVKDAYENARFLCEQYYLSSPELKVTEHNEYEKGEPVRIIYVPSHLYHMLFELFKNSMRATVEHHT 261 (482)
Q Consensus 182 ~~ig~i~~~~~l~~li~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~L~~il~NLl~NAik~t~~~~~ 261 (482)
+++ ++...+..++..+..+....-. ...+ ...+..++++..|++.+.||+.|+++||+||+++|+.
T Consensus 298 e~i-------nft~fl~~ii~R~e~~~~~e~~---~~~v----R~~p~~~~~veiD~DK~tQVldNii~NA~KYsP~Gg~ 363 (459)
T COG5002 298 EWI-------NFTAFLNEIINRFEMILKKETI---ARFV----RDIPKQDIWVEIDPDKMTQVLDNIISNALKYSPDGGR 363 (459)
T ss_pred HHH-------HhHHHHHHHHHHHHHHHhhHHH---HHHH----hcCCCCceEEEeChhHHHHHHHHHHHHHhhcCCCCCe
Confidence 555 7777777777777665322100 0011 1124567899999999999999999999999999886
Q ss_pred CCCCCCCEEEEEEecCceeEEEEEEcCCCCChhhHhhhhhcccccCCCCCCCCCCCCCCCCcccCHHHHHHHHHHhCCEE
Q psy14548 262 DTDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVTDMLFHYMYSTAPQPSKSDAHTVPLAGYGYGLPISRLYARYFHGDI 341 (482)
Q Consensus 262 ~~~~~p~I~v~~~~~~~~~~i~V~D~G~GI~~~~~~~if~~f~~t~~~~~~~~~~~~~~~G~GLGL~i~r~~~~~~gG~i 341 (482)
|++.+...++++.|+|+|+|.|||.+++++||++||+ .|..+++..+|+||||+|+|.+++.|||.|
T Consensus 364 -------Itv~~~~~~~~v~iSI~D~G~gIPk~d~~~iFdrfyR------vdkARsR~~gGTGLGLaIakeiV~~hgG~i 430 (459)
T COG5002 364 -------ITVSVKQRETWVEISISDQGLGIPKEDLEKIFDRFYR------VDKARSRKMGGTGLGLAIAKEIVQAHGGRI 430 (459)
T ss_pred -------EEEEEeeeCcEEEEEEccCCCCCCchhHHHHHHHHhh------hhhhhhhcCCCCchhHHHHHHHHHHhCCeE
Confidence 9999999999999999999999999999999999999 556678889999999999999999999999
Q ss_pred EEEeecCCcEEEEEEeeCCCC
Q psy14548 342 MLLSCDGLGTDAIIYLKALSN 362 (482)
Q Consensus 342 ~v~s~~g~Gt~f~i~lp~~~~ 362 (482)
|.+|..|+||+|+|+||....
T Consensus 431 WA~s~~gkgtt~~ftLPy~~~ 451 (459)
T COG5002 431 WAESEEGKGTTFSFTLPYSGE 451 (459)
T ss_pred EEecccCCceEEEEEecccCc
Confidence 999999999999999997643
No 4
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=99.97 E-value=3.2e-29 Score=264.35 Aligned_cols=223 Identities=15% Similarity=0.142 Sum_probs=184.6
Q ss_pred HHHHHHHHHHHHHhhchhHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhhHHHHHHHHHHhhccccccCCCCCC
Q psy14548 103 LDKFCKALVKIRNRHSDVVQTMAQGVMELKDSHDVDHQTENSIQYFLDRFYMSRISIRMLINQHTLLFGDELTRGDSSLR 182 (482)
Q Consensus 103 ~~~f~~~l~~~l~~~~~~i~~la~g~~e~~~~~~~~~~~~e~~~~~Ld~i~~sri~~r~Li~~~l~L~~~~~~~~~~~~~ 182 (482)
...|...++|.|++|++.|...+..+.+.... +++++..+.+..|......+..+++++|++.+-..+....+..
T Consensus 660 RsaLL~sISHDLRTPLt~i~Gaa~tL~~~~~~-----l~~~~~aeLl~~I~ees~~L~rlV~NLLdmTRi~sG~~~l~~~ 734 (890)
T COG2205 660 RSALLASISHDLRTPLTAIMGAAETLLLDGEA-----LSPEDRAELLSSIREESERLTRLVTNLLDMTRLQSGGVNLKLD 734 (890)
T ss_pred HHHHHHHhhccccCcHHHHhhhHHHhhhcccc-----cCcHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcccccc
Confidence 45789999999999999999988887776554 3567788899999988888888999999998765433334444
Q ss_pred cccccCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEeeccCCCCCeEEEechhHHHHHHHHHHHHHHHHhhhcCCC
Q psy14548 183 HIGCIDPQCDLIGVVKDAYENARFLCEQYYLSSPELKVTEHNEYEKGEPVRIIYVPSHLYHMLFELFKNSMRATVEHHTD 262 (482)
Q Consensus 183 ~ig~i~~~~~l~~li~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~L~~il~NLl~NAik~t~~~~~~ 262 (482)
+. .+.++|..+...++.. .....|.... +.+...+.+|...++||+.||++||+||++.+..
T Consensus 735 ~~-------~veEvVg~Al~r~~k~-------~~~~~i~v~~---~~dl~li~~D~~LieQVLiNLleNA~Kyap~~s~- 796 (890)
T COG2205 735 WV-------LVEEVVGEALQRLRKR-------FTGHKIVVSV---PVDLPLIHVDSPLIEQVLINLLENALKYAPPGSE- 796 (890)
T ss_pred hh-------hHHHHHHHHHHHhhhh-------cCCceEEEec---CCCCceEecCHHHHHHHHHHHHHHHHhhCCCCCe-
Confidence 44 8888888888877652 3333444333 3334568999999999999999999999988765
Q ss_pred CCCCCCEEEEEEecCceeEEEEEEcCCCCChhhHhhhhhcccccCCCCCCCCCCCCCCCCcccCHHHHHHHHHHhCCEEE
Q psy14548 263 TDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVTDMLFHYMYSTAPQPSKSDAHTVPLAGYGYGLPISRLYARYFHGDIM 342 (482)
Q Consensus 263 ~~~~p~I~v~~~~~~~~~~i~V~D~G~GI~~~~~~~if~~f~~t~~~~~~~~~~~~~~~G~GLGL~i~r~~~~~~gG~i~ 342 (482)
|.|.+....+.+.|.|.|+|+|||++++++||++||+.... ....|+||||+||+.+++.|||+|+
T Consensus 797 ------I~I~~~~~~~~v~~~V~DeGpGIP~~~~~~IFD~F~r~~~~--------~~~~G~GLGLsIc~~iv~ahgG~I~ 862 (890)
T COG2205 797 ------IRINAGVERENVVFSVIDEGPGIPEGELERIFDKFYRGNKE--------SATRGVGLGLAICRGIVEAHGGTIS 862 (890)
T ss_pred ------EEEEEEEecceEEEEEEeCCCCCChhHHHHhhhhhhcCCCC--------CCCCCccccHHHHHHHHHHcCCeEE
Confidence 99999999999999999999999999999999999996431 1268999999999999999999999
Q ss_pred EEeecCCcEEEEEEeeCCCC
Q psy14548 343 LLSCDGLGTDAIIYLKALSN 362 (482)
Q Consensus 343 v~s~~g~Gt~f~i~lp~~~~ 362 (482)
+.+.+++|++|+|.||....
T Consensus 863 a~~~~~gGa~f~~~LP~~~~ 882 (890)
T COG2205 863 AENNPGGGAIFVFTLPVEED 882 (890)
T ss_pred EEEcCCCceEEEEEeecCCC
Confidence 99999999999999998654
No 5
>PRK09303 adaptive-response sensory kinase; Validated
Probab=99.96 E-value=8.6e-28 Score=247.65 Aligned_cols=230 Identities=17% Similarity=0.149 Sum_probs=175.7
Q ss_pred chhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhhHHHHHHHHHHhhccccccCCC
Q psy14548 100 TDTLDKFCKALVKIRNRHSDVVQTMAQGVMELKDSHDVDHQTENSIQYFLDRFYMSRISIRMLINQHTLLFGDELTRGDS 179 (482)
Q Consensus 100 ~~~~~~f~~~l~~~l~~~~~~i~~la~g~~e~~~~~~~~~~~~e~~~~~Ld~i~~sri~~r~Li~~~l~L~~~~~~~~~~ 179 (482)
.+...+|...++|++++|++.+...++.+.+..... .+....+..+++++.+..+...+..++++++.+.+....
T Consensus 148 ~~~~~~l~~~iaHeLrtPLt~i~~~~e~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~li~~ll~~~~~~~~---- 222 (380)
T PRK09303 148 LKFKDRVLAMLAHDLRTPLTAASLALETLELGQIDE-DTELKPALIEQLQDQARRQLEEIERLITDLLEVGRTRWE---- 222 (380)
T ss_pred HHHHHHHHHHHhHhhcchHHHHHHHHHHHhccCccc-cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC----
Confidence 344678999999999999999877777655322211 111223557788888887777777788988888754321
Q ss_pred CCCcccccCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEeeccCCCCCeEEEechhHHHHHHHHHHHHHHHHhhhc
Q psy14548 180 SLRHIGCIDPQCDLIGVVKDAYENARFLCEQYYLSSPELKVTEHNEYEKGEPVRIIYVPSHLYHMLFELFKNSMRATVEH 259 (482)
Q Consensus 180 ~~~~ig~i~~~~~l~~li~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~L~~il~NLl~NAik~t~~~ 259 (482)
........+++.++++++++.+...+.. ..+.+... ++.+ ...+.+|+..|.||+.||++||++|+..+
T Consensus 223 ---~~~~~~~~~~l~~ll~~~~~~~~~~~~~-----~~i~l~~~--~~~~-~~~v~~d~~~l~qvl~NLl~NAik~~~~~ 291 (380)
T PRK09303 223 ---ALRFNPQKLDLGSLCQEVILELEKRWLA-----KSLEIQTD--IPSD-LPSVYADQERIRQVLLNLLDNAIKYTPEG 291 (380)
T ss_pred ---CceeccccCCHHHHHHHHHHHHHHHHHH-----cCCEEEEE--cCCC-CCeEEeCHHHHHHHHHHHHHHHHhcCCCC
Confidence 1112234669999999999988876542 23444433 2222 23689999999999999999999999776
Q ss_pred CCCCCCCCCEEEEEEe-cCceeEEEEEEcCCCCChhhHhhhhhcccccCCCCCCCCCCCCCCCCcccCHHHHHHHHHHhC
Q psy14548 260 HTDTDVLPPIEVSVVR-GKEDICVKMSDKGGGIPRSVTDMLFHYMYSTAPQPSKSDAHTVPLAGYGYGLPISRLYARYFH 338 (482)
Q Consensus 260 ~~~~~~~p~I~v~~~~-~~~~~~i~V~D~G~GI~~~~~~~if~~f~~t~~~~~~~~~~~~~~~G~GLGL~i~r~~~~~~g 338 (482)
+. |.|.+.. .++.+.|.|.|+|+|||++.+++||++||+++. .....|+||||+||+.+++.||
T Consensus 292 ~~-------I~i~~~~~~~~~v~i~V~D~G~GI~~~~~~~iF~pf~~~~~--------~~~~~G~GLGL~i~~~iv~~~g 356 (380)
T PRK09303 292 GT-------ITLSMLHRTTQKVQVSICDTGPGIPEEEQERIFEDRVRLPR--------DEGTEGYGIGLSVCRRIVRVHY 356 (380)
T ss_pred ce-------EEEEEEecCCCEEEEEEEEcCCCCCHHHHHHHccCceeCCC--------CCCCCcccccHHHHHHHHHHcC
Confidence 54 8887754 556799999999999999999999999998652 2334699999999999999999
Q ss_pred CEEEEEeecCCcEEEEEEeeCC
Q psy14548 339 GDIMLLSCDGLGTDAIIYLKAL 360 (482)
Q Consensus 339 G~i~v~s~~g~Gt~f~i~lp~~ 360 (482)
|+|++.|.+++|++|+|+||..
T Consensus 357 G~i~v~s~~~~Gt~f~i~lP~~ 378 (380)
T PRK09303 357 GQIWVDSEPGQGSCFHFTLPVY 378 (380)
T ss_pred CEEEEEecCCCccEEEEEEecC
Confidence 9999999999999999999974
No 6
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=99.95 E-value=4.5e-27 Score=263.30 Aligned_cols=224 Identities=17% Similarity=0.156 Sum_probs=175.0
Q ss_pred hhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhhHHHHHHHHHHhhccccccCCCC
Q psy14548 101 DTLDKFCKALVKIRNRHSDVVQTMAQGVMELKDSHDVDHQTENSIQYFLDRFYMSRISIRMLINQHTLLFGDELTRGDSS 180 (482)
Q Consensus 101 ~~~~~f~~~l~~~l~~~~~~i~~la~g~~e~~~~~~~~~~~~e~~~~~Ld~i~~sri~~r~Li~~~l~L~~~~~~~~~~~ 180 (482)
+...+|...++|++++|++.|..+++.+.+. ..+++..++++.+..+...+..++++.+.+.+.....
T Consensus 448 ~~k~~fla~iSHELRtPL~aI~g~~elL~~~--------~~~~~~~~~l~~I~~~~~~L~~lI~dILdlsrle~~~---- 515 (894)
T PRK10618 448 QARKAFLQNIGDELKQPLQSLAQLAAQLRQT--------SDEEQQQPELDQLAEQSDVLVRLVDNIQLLNMLETQD---- 515 (894)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHhCC--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC----
Confidence 4456899999999999999998777643221 1346678889999988777777899998887643211
Q ss_pred CCcccccCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEeeccCCCCCeEEEechhHHHHHHHHHHHHHHHHhhhcC
Q psy14548 181 LRHIGCIDPQCDLIGVVKDAYENARFLCEQYYLSSPELKVTEHNEYEKGEPVRIIYVPSHLYHMLFELFKNSMRATVEHH 260 (482)
Q Consensus 181 ~~~ig~i~~~~~l~~li~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~L~~il~NLl~NAik~t~~~~ 260 (482)
.......+++.+++++++..+...+.. .++.+.+.. +...+..+.+|+.+|.||+.||++||+||+..|.
T Consensus 516 ---~~l~~~~~~L~~ll~~vl~~~~~~a~~-----k~i~l~~~~--~~~~~~~v~~D~~~L~QVL~NLL~NAik~t~~G~ 585 (894)
T PRK10618 516 ---WKPEQELFSLQDLIDEVLPEVLPAIKR-----KGLQLLIHN--HLKAEQLRIGDRDALRKILLLLLNYAITTTAYGK 585 (894)
T ss_pred ---CcccceeECHHHHHHHHHHHHHHHHHH-----CCCEEEEEe--CCCCCcEEEecHHHHHHHHHHHHHHHHHhCCCCe
Confidence 112234569999999999988876543 344444433 2234567899999999999999999999996543
Q ss_pred CCCCCCCCEEEEEEec---CceeEEEEEEcCCCCChhhHhhhhhcccccCCCCCCCCCCCCCCCCcccCHHHHHHHHHHh
Q psy14548 261 TDTDVLPPIEVSVVRG---KEDICVKMSDKGGGIPRSVTDMLFHYMYSTAPQPSKSDAHTVPLAGYGYGLPISRLYARYF 337 (482)
Q Consensus 261 ~~~~~~p~I~v~~~~~---~~~~~i~V~D~G~GI~~~~~~~if~~f~~t~~~~~~~~~~~~~~~G~GLGL~i~r~~~~~~ 337 (482)
|.|.+... ++.+.|+|+|+|+|||++.+++||+|||+++. ..+..+|+||||+||+.+++.|
T Consensus 586 --------I~I~v~~~~~~~~~l~I~V~DtG~GI~~e~l~~IFePF~t~~~-------~~~~~~GtGLGLaI~k~Lve~~ 650 (894)
T PRK10618 586 --------ITLEVDQDESSPDRLTIRILDTGAGVSIKELDNLHFPFLNQTQ-------GDRYGKASGLTFFLCNQLCRKL 650 (894)
T ss_pred --------EEEEEEEccCCCcEEEEEEEECCCCCCHHHHHHhcCccccCCC-------CCCCCCCcChhHHHHHHHHHHc
Confidence 77777643 35799999999999999999999999998643 1233469999999999999999
Q ss_pred CCEEEEEeecCCcEEEEEEeeCCC
Q psy14548 338 HGDIMLLSCDGLGTDAIIYLKALS 361 (482)
Q Consensus 338 gG~i~v~s~~g~Gt~f~i~lp~~~ 361 (482)
||+|.+.|.+|+||+|+|+||...
T Consensus 651 GG~I~v~S~~g~GT~F~I~LPl~~ 674 (894)
T PRK10618 651 GGHLTIKSREGLGTRYSIHLKMLA 674 (894)
T ss_pred CCEEEEEECCCCcEEEEEEEEccC
Confidence 999999999999999999999853
No 7
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]
Probab=99.95 E-value=1.6e-25 Score=229.99 Aligned_cols=270 Identities=18% Similarity=0.224 Sum_probs=190.1
Q ss_pred HHHHHHHHHHHHHHHHHHhcCChhhhcCChHHHHHHHHHHHHHHHHccccc--CCCCchhHHHHHHHHHHHHHhhchhHH
Q psy14548 45 MFLRKELPVRLANIMKEIHLLPDNLLRMPSVGLVNEWYAMSFDEILEFEKA--DSNSTDTLDKFCKALVKIRNRHSDVVQ 122 (482)
Q Consensus 45 ~~l~~eLp~Rla~ri~~l~~lp~~l~~~~~i~~v~~~y~~sf~~l~~~~~~--~~~~~~~~~~f~~~l~~~l~~~~~~i~ 122 (482)
+-.+.||..|+.+|..++..-...+. .++.+ -.+.=.+++..... .......+.++...++|+++.|+..+.
T Consensus 330 ~~a~~eLE~rV~eRTadL~~~n~~l~-----~EIae-r~~ae~~LR~~QdeLvQA~kLA~LGQmSA~iaHElNQPLaaiR 403 (603)
T COG4191 330 QEARAELERRVEERTADLTRANARLQ-----AEIAE-REQAEAALRRAQDELVQAGKLAALGQMSAGIAHELNQPLAAIR 403 (603)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHH-----HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 34567888999999988865321111 11111 12222222221110 012244567899999999999999999
Q ss_pred HHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhhHHH-HHHHHHHhhccccccCCCCCCcccccCCCCCHHHHHHHHH
Q psy14548 123 TMAQGVMELKDSHDVDHQTENSIQYFLDRFYMSRISIRM-LINQHTLLFGDELTRGDSSLRHIGCIDPQCDLIGVVKDAY 201 (482)
Q Consensus 123 ~la~g~~e~~~~~~~~~~~~e~~~~~Ld~i~~sri~~r~-Li~~~l~L~~~~~~~~~~~~~~ig~i~~~~~l~~li~~~~ 201 (482)
+++....-+.+.-+ .++...-+.+|. ...-|| -|..||..+-... ... ...+.+.++|+++.
T Consensus 404 t~adna~~lLergr-----~e~a~~Nl~~I~--~LteRma~It~~Lk~FArk~---~~a-------~~~v~l~~ai~~Al 466 (603)
T COG4191 404 TYADNARLLLERGR-----TEEARENLERIS--ALTERMAAITAHLKSFARKS---RDA-------AGPVSLREAIEGAL 466 (603)
T ss_pred hHHHHHHHHHHcCC-----hHHHHhHHHHHH--HHHHHHHHHHHHHHHHhccC---ccc-------cCCccHHHHHHHHH
Confidence 99987776665432 233333344443 233333 2445555553211 111 24569999999999
Q ss_pred HHHHHHHHHhhcCCCCceEEEeeccCCCCCeEEEechhHHHHHHHHHHHHHHHHhhhcCCCCCCCCCEEEEEEecCceeE
Q psy14548 202 ENARFLCEQYYLSSPELKVTEHNEYEKGEPVRIIYVPSHLYHMLFELFKNSMRATVEHHTDTDVLPPIEVSVVRGKEDIC 281 (482)
Q Consensus 202 ~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~L~~il~NLl~NAik~t~~~~~~~~~~p~I~v~~~~~~~~~~ 281 (482)
..+..-.+ ...+.+.... ++.++.+.+++.+|+|||.|||.||++++... ..+.|.|.+...++.+.
T Consensus 467 ~ll~~R~~-----~~~~~l~~~~---~~~~~~V~~~~iRLeQVLvNLl~NALDA~~~~-----~~~~i~i~~~~~~~~v~ 533 (603)
T COG4191 467 ELLRGRLR-----AAGVELELDL---PDAPLWVMANEIRLEQVLVNLLQNALDAMAGQ-----EDRRLSIRAQREGGQVV 533 (603)
T ss_pred HHHHHhhh-----ccCceeeccC---CCCCceeecchhhHHHHHHHHHHHHHHHhcCC-----CCCeeEEEEEecCCeEE
Confidence 98876322 2334444322 34578999999999999999999999998542 34569999999999999
Q ss_pred EEEEEcCCCCChhhHhhhhhcccccCCCCCCCCCCCCCCCCcccCHHHHHHHHHHhCCEEEEEeecCCcEEEEEEeeCC
Q psy14548 282 VKMSDKGGGIPRSVTDMLFHYMYSTAPQPSKSDAHTVPLAGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLKAL 360 (482)
Q Consensus 282 i~V~D~G~GI~~~~~~~if~~f~~t~~~~~~~~~~~~~~~G~GLGL~i~r~~~~~~gG~i~v~s~~g~Gt~f~i~lp~~ 360 (482)
|+|+|||+||+++.++++|+||||||+. ..|.||||+||..|++.+||+|.+.+.++.|+.|+|.|++.
T Consensus 534 l~VrDnGpGi~~e~~~~lFePF~TtK~~----------~~GLGLGLaIS~~i~~d~GGsL~v~n~~~~Ga~F~i~L~~a 602 (603)
T COG4191 534 LTVRDNGPGIAPEALPHLFEPFFTTKPV----------GKGLGLGLAISQNIARDLGGSLEVANHPEGGASFTIELRRA 602 (603)
T ss_pred EEEccCCCCCCHHHHHhhcCCccccCcc----------cCCcchhHHHHHHHHHHhCCeEEeecCCCCceEEEEEeecC
Confidence 9999999999999999999999998753 26999999999999999999999999889999999999864
No 8
>PRK11006 phoR phosphate regulon sensor protein; Provisional
Probab=99.95 E-value=6.8e-26 Score=237.24 Aligned_cols=222 Identities=17% Similarity=0.116 Sum_probs=170.4
Q ss_pred hHHHHHHHHHHHHHhhchhHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhhHHHHHHHHHHhhccccccCCCCC
Q psy14548 102 TLDKFCKALVKIRNRHSDVVQTMAQGVMELKDSHDVDHQTENSIQYFLDRFYMSRISIRMLINQHTLLFGDELTRGDSSL 181 (482)
Q Consensus 102 ~~~~f~~~l~~~l~~~~~~i~~la~g~~e~~~~~~~~~~~~e~~~~~Ld~i~~sri~~r~Li~~~l~L~~~~~~~~~~~~ 181 (482)
...+|...++|++++|++.|..+++.+.+ . ....+....+++.+..+...+..++++++.+.+....
T Consensus 203 ~~~~~~~~isHelrtPL~~i~~~~~~l~~----~---~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~r~~~~------ 269 (430)
T PRK11006 203 ARRNFFANVSHELRTPLTVLQGYLEMMQD----Q---PLEGALREKALHTMREQTQRMEGLVKQLLTLSKIEAA------ 269 (430)
T ss_pred HHHHHHHHhHHHhcchHHHHHHHHHHHhc----C---CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC------
Confidence 34579999999999999999777654322 1 1234667778888887777777789999988754221
Q ss_pred CcccccCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEeeccCCCCCeEEEechhHHHHHHHHHHHHHHHHhhhcCC
Q psy14548 182 RHIGCIDPQCDLIGVVKDAYENARFLCEQYYLSSPELKVTEHNEYEKGEPVRIIYVPSHLYHMLFELFKNSMRATVEHHT 261 (482)
Q Consensus 182 ~~ig~i~~~~~l~~li~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~L~~il~NLl~NAik~t~~~~~ 261 (482)
........+++..+++.+...+..+. .....+.+.. +....+.+|+..|.+++.||++||+||+.+++.
T Consensus 270 -~~~~~~~~~~~~~~~~~l~~~~~~~~------~~~~~i~~~~----~~~~~i~~d~~~l~~vl~NLl~NAik~~~~~~~ 338 (430)
T PRK11006 270 -PTIDLNEKVDVPMMLRVLEREAQTLS------QGKHTITFEV----DNSLKVFGNEDQLRSAISNLVYNAVNHTPEGTH 338 (430)
T ss_pred -CCcccCCccCHHHHHHHHHHHHHHHh------cCCcEEEEec----CCCceEEECHHHHHHHHHHHHHHHHhcCCCCCe
Confidence 01112345588888877666555432 2233444332 234568999999999999999999999976543
Q ss_pred CCCCCCCEEEEEEecCceeEEEEEEcCCCCChhhHhhhhhcccccCCCCCCCCCCCCCCCCcccCHHHHHHHHHHhCCEE
Q psy14548 262 DTDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVTDMLFHYMYSTAPQPSKSDAHTVPLAGYGYGLPISRLYARYFHGDI 341 (482)
Q Consensus 262 ~~~~~p~I~v~~~~~~~~~~i~V~D~G~GI~~~~~~~if~~f~~t~~~~~~~~~~~~~~~G~GLGL~i~r~~~~~~gG~i 341 (482)
|.|.+...++.+.|+|+|+|+|||++.++++|++||++.. +.....+|+||||+|||.+++.|||+|
T Consensus 339 -------I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~------~~~~~~~G~GLGL~ivk~iv~~~gG~i 405 (430)
T PRK11006 339 -------ITVRWQRVPQGAEFSVEDNGPGIAPEHIPRLTERFYRVDK------ARSRQTGGSGLGLAIVKHALSHHDSRL 405 (430)
T ss_pred -------EEEEEEEcCCEEEEEEEEcCCCCCHHHHHHhccCcccccC------CCCCCCCCCchHHHHHHHHHHHCCCEE
Confidence 8888888888899999999999999999999999998542 133445799999999999999999999
Q ss_pred EEEeecCCcEEEEEEeeCC
Q psy14548 342 MLLSCDGLGTDAIIYLKAL 360 (482)
Q Consensus 342 ~v~s~~g~Gt~f~i~lp~~ 360 (482)
.++|.+|.||+|+++||..
T Consensus 406 ~i~s~~~~Gt~f~i~lP~~ 424 (430)
T PRK11006 406 EIESEVGKGTRFSFVLPER 424 (430)
T ss_pred EEEecCCCceEEEEEechH
Confidence 9999999999999999963
No 9
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=99.94 E-value=6.4e-26 Score=254.50 Aligned_cols=225 Identities=19% Similarity=0.258 Sum_probs=176.3
Q ss_pred HHHHHHHHHHHHHhhchhHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhhHHHHHHHHHHhhccccccCCCCCC
Q psy14548 103 LDKFCKALVKIRNRHSDVVQTMAQGVMELKDSHDVDHQTENSIQYFLDRFYMSRISIRMLINQHTLLFGDELTRGDSSLR 182 (482)
Q Consensus 103 ~~~f~~~l~~~l~~~~~~i~~la~g~~e~~~~~~~~~~~~e~~~~~Ld~i~~sri~~r~Li~~~l~L~~~~~~~~~~~~~ 182 (482)
..+|...++|++++|++.|.++++-+.+ . ..+++..++++.+..+...+..++++.+.+.+.. .+
T Consensus 283 ~~~~~a~isHelrtPL~~I~g~~~ll~~----~----~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~-------~~ 347 (779)
T PRK11091 283 KTTFISTISHELRTPLNGIVGLSRILLD----T----ELTAEQRKYLKTIHVSAITLGNIFNDIIDMDKME-------RR 347 (779)
T ss_pred HHHHHHHhhHhhcCcHHHHHHHHHHHhc----C----CCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHh-------CC
Confidence 4579999999999999999766653321 1 1245667899999988777777899998887532 12
Q ss_pred cccccCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEeeccCCCCCeEEEechhHHHHHHHHHHHHHHHHhhhcCCC
Q psy14548 183 HIGCIDPQCDLIGVVKDAYENARFLCEQYYLSSPELKVTEHNEYEKGEPVRIIYVPSHLYHMLFELFKNSMRATVEHHTD 262 (482)
Q Consensus 183 ~ig~i~~~~~l~~li~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~L~~il~NLl~NAik~t~~~~~~ 262 (482)
........+++.++++++...+...+.. ..+.+.+.. +++.+..+.+|+.+|.||+.||++||+||+..+.
T Consensus 348 ~~~~~~~~~~l~~~i~~~~~~~~~~~~~-----~~i~~~~~~--~~~~~~~v~~d~~~l~qvl~NLl~NAik~~~~g~-- 418 (779)
T PRK11091 348 KLQLDNQPIDFTDFLADLENLSGLQAEQ-----KGLRFDLEP--LLPLPHKVITDGTRLRQILWNLISNAVKFTQQGG-- 418 (779)
T ss_pred CcEEEeeccCHHHHHHHHHHHHHHHHHh-----cCCEEEEEe--CCCCCceEEeCHHHHHHHHHHHHHHHHHhCCCCc--
Confidence 2233445679999999999988876543 234444332 3344556899999999999999999999995543
Q ss_pred CCCCCCEEEEEEec-CceeEEEEEEcCCCCChhhHhhhhhcccccCCCCCCCCCCCCCCCCcccCHHHHHHHHHHhCCEE
Q psy14548 263 TDVLPPIEVSVVRG-KEDICVKMSDKGGGIPRSVTDMLFHYMYSTAPQPSKSDAHTVPLAGYGYGLPISRLYARYFHGDI 341 (482)
Q Consensus 263 ~~~~p~I~v~~~~~-~~~~~i~V~D~G~GI~~~~~~~if~~f~~t~~~~~~~~~~~~~~~G~GLGL~i~r~~~~~~gG~i 341 (482)
|.|.+... ++.+.|.|+|+|+|||++.+++||++||+++.. +.....+|+||||+|||.+++.|||+|
T Consensus 419 ------v~i~~~~~~~~~~~i~V~D~G~Gi~~~~~~~iF~~f~~~~~~-----~~~~~~~GtGLGL~i~~~iv~~~gG~i 487 (779)
T PRK11091 419 ------VTVRVRYEEGDMLTFEVEDSGIGIPEDELDKIFAMYYQVKDS-----HGGKPATGTGIGLAVSKRLAQAMGGDI 487 (779)
T ss_pred ------EEEEEEEccCCEEEEEEEecCCCCCHHHHHHHHHHhhcccCC-----CCCCCCCCcchHHHHHHHHHHHcCCEE
Confidence 78888766 677999999999999999999999999997421 133446799999999999999999999
Q ss_pred EEEeecCCcEEEEEEeeCCCC
Q psy14548 342 MLLSCDGLGTDAIIYLKALSN 362 (482)
Q Consensus 342 ~v~s~~g~Gt~f~i~lp~~~~ 362 (482)
++.|.+|.||+|+++||....
T Consensus 488 ~v~s~~g~Gt~f~i~lP~~~~ 508 (779)
T PRK11091 488 TVTSEEGKGSCFTLTIHAPAV 508 (779)
T ss_pred EEEecCCCeEEEEEEEecccc
Confidence 999999999999999997543
No 10
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=99.94 E-value=7.2e-26 Score=256.47 Aligned_cols=225 Identities=16% Similarity=0.158 Sum_probs=177.8
Q ss_pred hhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhhHHHHHHHHHHhhccccccCCCC
Q psy14548 101 DTLDKFCKALVKIRNRHSDVVQTMAQGVMELKDSHDVDHQTENSIQYFLDRFYMSRISIRMLINQHTLLFGDELTRGDSS 180 (482)
Q Consensus 101 ~~~~~f~~~l~~~l~~~~~~i~~la~g~~e~~~~~~~~~~~~e~~~~~Ld~i~~sri~~r~Li~~~l~L~~~~~~~~~~~ 180 (482)
+....|...++|++++|++.|...++.+. . ...+++.+++++.+..+...+..++++++.+.+...
T Consensus 445 ~~k~~fla~iSHELRTPL~~I~g~lelL~----~----~~~~~~~~~~l~~i~~~~~~L~~lI~dlLd~srie~------ 510 (924)
T PRK10841 445 QSKSMFLATVSHELRTPLYGIIGNLDLLQ----T----KELPKGVDRLVTAMNNSSSLLLKIISDILDFSKIES------ 510 (924)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHh----C----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------
Confidence 34567999999999999999876665432 1 113467788999999887777778999999886432
Q ss_pred CCcccccCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEeeccCCCCCeEEEechhHHHHHHHHHHHHHHHHhhhcC
Q psy14548 181 LRHIGCIDPQCDLIGVVKDAYENARFLCEQYYLSSPELKVTEHNEYEKGEPVRIIYVPSHLYHMLFELFKNSMRATVEHH 260 (482)
Q Consensus 181 ~~~ig~i~~~~~l~~li~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~L~~il~NLl~NAik~t~~~~ 260 (482)
+........+++.+++++++......+.. ..+.+.+ .+++..+..+.+|+.+|.||+.||++||+||+..+.
T Consensus 511 -~~~~l~~~~~~l~~li~~v~~~~~~~~~~-----k~i~l~~--~i~~~~~~~v~~D~~~L~qvl~NLl~NAik~t~~G~ 582 (924)
T PRK10841 511 -EQLKIEPREFSPREVINHITANYLPLVVK-----KRLGLYC--FIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGC 582 (924)
T ss_pred -CCceeeeEEecHHHHHHHHHHHHHHHHHH-----cCcEEEE--EeCCCCCcEEEECHHHHHHHHHHHHHHHHhhCCCCc
Confidence 11122234569999999999888765542 2344433 333455567999999999999999999999996554
Q ss_pred CCCCCCCCEEEEEEecCceeEEEEEEcCCCCChhhHhhhhhcccccCCCCCCCCCCCCCCCCcccCHHHHHHHHHHhCCE
Q psy14548 261 TDTDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVTDMLFHYMYSTAPQPSKSDAHTVPLAGYGYGLPISRLYARYFHGD 340 (482)
Q Consensus 261 ~~~~~~p~I~v~~~~~~~~~~i~V~D~G~GI~~~~~~~if~~f~~t~~~~~~~~~~~~~~~G~GLGL~i~r~~~~~~gG~ 340 (482)
|.|.+...++.+.|.|+|+|+||+++.++++|++||++.. +.....+|+||||+||+.+++.|||+
T Consensus 583 --------I~I~v~~~~~~l~i~V~DtG~GI~~e~~~~lFepF~~~~~------~~~~~~~GtGLGL~I~k~lv~~~gG~ 648 (924)
T PRK10841 583 --------IVLHVRVDGDYLSFRVRDTGVGIPAKEVVRLFDPFFQVGT------GVQRNFQGTGLGLAICEKLINMMDGD 648 (924)
T ss_pred --------EEEEEEEeCCEEEEEEEEcCcCCCHHHHHHHhcccccCCC------CCCCCCCCeehhHHHHHHHHHHCCCE
Confidence 8888888888999999999999999999999999998542 23344579999999999999999999
Q ss_pred EEEEeecCCcEEEEEEeeCCC
Q psy14548 341 IMLLSCDGLGTDAIIYLKALS 361 (482)
Q Consensus 341 i~v~s~~g~Gt~f~i~lp~~~ 361 (482)
|+++|.+|.||+|+|.||...
T Consensus 649 I~v~S~~g~Gt~F~i~LP~~~ 669 (924)
T PRK10841 649 ISVDSEPGMGSQFTIRIPLYG 669 (924)
T ss_pred EEEEEcCCCcEEEEEEEECCc
Confidence 999999999999999999753
No 11
>PRK10815 sensor protein PhoQ; Provisional
Probab=99.94 E-value=9.6e-25 Score=231.73 Aligned_cols=258 Identities=14% Similarity=0.152 Sum_probs=175.1
Q ss_pred HHHHHHHHhcCChhhhcCChHHHHHHHHHHHHHHHHcccccCCCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhhh
Q psy14548 55 LANIMKEIHLLPDNLLRMPSVGLVNEWYAMSFDEILEFEKADSNSTDTLDKFCKALVKIRNRHSDVVQTMAQGVMELKDS 134 (482)
Q Consensus 55 la~ri~~l~~lp~~l~~~~~i~~v~~~y~~sf~~l~~~~~~~~~~~~~~~~f~~~l~~~l~~~~~~i~~la~g~~e~~~~ 134 (482)
|++.++++..............++.. ..++|+.+.+..+. ..+..++|...++|++++|++.+.+.++.+.+-.
T Consensus 222 L~~~~~~l~~~~~~~~~~~~~~El~~-L~~~ln~~l~~~~~---~~~~~~~~l~~isHELRTPLt~I~~~l~~L~~~~-- 295 (485)
T PRK10815 222 LAKQVRELEEGEREQLDPNPPRELTS-LVRNLNRLLKNERE---RYTKYRTTLTDLTHSLKTPLAVLQSTLRSLRSGK-- 295 (485)
T ss_pred HHHHHHHHhcCCcccccCCChHHHHH-HHHHHHHHHHHHHH---HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcCC--
Confidence 55555555432221111122233333 56667766543221 2345578999999999999999977766443211
Q ss_pred cCCCCCChHH-HHHHHHHHHHhhhhHHHHHHHHHHhhccccccCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHhhc
Q psy14548 135 HDVDHQTENS-IQYFLDRFYMSRISIRMLINQHTLLFGDELTRGDSSLRHIGCIDPQCDLIGVVKDAYENARFLCEQYYL 213 (482)
Q Consensus 135 ~~~~~~~~e~-~~~~Ld~i~~sri~~r~Li~~~l~L~~~~~~~~~~~~~~ig~i~~~~~l~~li~~~~~~~~~l~~~~~~ 213 (482)
....++ ....++.+. .+..++++++....... +......+.+++.++++++++.+...+..
T Consensus 296 ----~~~~~~~~~~~~~~i~----ri~~~i~~ll~~~~~~~-------~~~~~~~~~~~l~~ll~~~~~~l~~~~~~--- 357 (485)
T PRK10815 296 ----QMSVEQAEPIMLEQIS----RISQQIGYYLHRASMRS-------EHNLLSRELHSVAPLLDNLTSALNKVYQR--- 357 (485)
T ss_pred ----CCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhc-------CCcccccceecHHHHHHHHHHHHHHHHHH---
Confidence 011222 122222222 22334555555543211 11112334568999999999888876542
Q ss_pred CCCCceEEEeeccCCCCCeEEEechhHHHHHHHHHHHHHHHHhhhcCCCCCCCCCEEEEEEecCceeEEEEEEcCCCCCh
Q psy14548 214 SSPELKVTEHNEYEKGEPVRIIYVPSHLYHMLFELFKNSMRATVEHHTDTDVLPPIEVSVVRGKEDICVKMSDKGGGIPR 293 (482)
Q Consensus 214 ~~~~~~i~~~~~~~~~~~~~v~~d~~~L~~il~NLl~NAik~t~~~~~~~~~~p~I~v~~~~~~~~~~i~V~D~G~GI~~ 293 (482)
.++.+.+.. +.+..+.+|+..|.+++.||++||++|+.+. |.|.+...++.+.|.|+|+|+|||+
T Consensus 358 --~~i~i~~~~----~~~~~v~~d~~~l~~vl~NLi~NAik~~~~~---------i~I~~~~~~~~v~I~V~D~G~GI~~ 422 (485)
T PRK10815 358 --KGVNITLDI----SPEITFVGEKNDFMEVMGNVLDNACKYCLEF---------VEISARQTDEHLHIVVEDDGPGIPE 422 (485)
T ss_pred --CCcEEEEec----CCCcEEEeCHHHHHHHHHHHHHHHHHhcCCc---------EEEEEEEeCCEEEEEEEECCCCcCH
Confidence 234444432 2346788999999999999999999999542 8888888888999999999999999
Q ss_pred hhHhhhhhcccccCCCCCCCCCCCCCCCCcccCHHHHHHHHHHhCCEEEEEeecCCcEEEEEEeeCCC
Q psy14548 294 SVTDMLFHYMYSTAPQPSKSDAHTVPLAGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLKALS 361 (482)
Q Consensus 294 ~~~~~if~~f~~t~~~~~~~~~~~~~~~G~GLGL~i~r~~~~~~gG~i~v~s~~g~Gt~f~i~lp~~~ 361 (482)
+.++++|++||++.. ..+|+||||+||+.+++.|||+|.+.|.+++||+|++.||...
T Consensus 423 e~~~~iF~~f~~~~~----------~~~G~GLGL~Ivk~iv~~~gG~i~v~s~~~~Gt~f~i~lp~~~ 480 (485)
T PRK10815 423 SKRELIFDRGQRADT----------LRPGQGLGLSVAREITEQYEGKISAGDSPLGGARMEVIFGRQH 480 (485)
T ss_pred HHHHHHhCCcccCCC----------CCCCcchhHHHHHHHHHHcCCEEEEEECCCCEEEEEEEEcCCC
Confidence 999999999998532 2259999999999999999999999999999999999999753
No 12
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=99.94 E-value=2.5e-25 Score=255.29 Aligned_cols=224 Identities=15% Similarity=0.126 Sum_probs=179.2
Q ss_pred hhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhhHHHHHHHHHHhhccccccCCCC
Q psy14548 101 DTLDKFCKALVKIRNRHSDVVQTMAQGVMELKDSHDVDHQTENSIQYFLDRFYMSRISIRMLINQHTLLFGDELTRGDSS 180 (482)
Q Consensus 101 ~~~~~f~~~l~~~l~~~~~~i~~la~g~~e~~~~~~~~~~~~e~~~~~Ld~i~~sri~~r~Li~~~l~L~~~~~~~~~~~ 180 (482)
+...+|...++|++++|++.|...++.+.+ . ..+++..++++.+..+...+..++++.+.+.+...
T Consensus 462 ~~~~~~~~~~sHelrtPL~~i~~~~~ll~~----~----~~~~~~~~~l~~i~~~~~~l~~~i~~ll~~~~~e~------ 527 (968)
T TIGR02956 462 RAKSAFLATMSHEIRTPLNGILGTLELLGD----T----GLTSQQQQYLQVINRSGESLLDILNDILDYSKIEA------ 527 (968)
T ss_pred HHHHHHHHHhHHHhhhHHHHHHHHHHHHhC----C----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------
Confidence 345789999999999999999877764422 1 12456778999999887777888999998876432
Q ss_pred CCcccccCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEeeccCCCCCeEEEechhHHHHHHHHHHHHHHHHhhhcC
Q psy14548 181 LRHIGCIDPQCDLIGVVKDAYENARFLCEQYYLSSPELKVTEHNEYEKGEPVRIIYVPSHLYHMLFELFKNSMRATVEHH 260 (482)
Q Consensus 181 ~~~ig~i~~~~~l~~li~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~L~~il~NLl~NAik~t~~~~ 260 (482)
+........+++.++++++++.+...+.. .++.+.+. +++..+..+.+|+.+|.||+.||++||+||+..+.
T Consensus 528 -~~~~~~~~~~~l~~ll~~~~~~~~~~~~~-----~~i~~~~~--~~~~~~~~~~~d~~~l~~il~nLi~NAik~~~~g~ 599 (968)
T TIGR02956 528 -GHLSISPRPFDLNALLDDVHHLMVSRAQL-----KGIQLRLN--IPEQLPNWWQGDGPRIRQVLINLVGNAIKFTDRGS 599 (968)
T ss_pred -CCCeeeecccCHHHHHHHHHHHHHHHHHH-----cCcEEEEE--eCCCCCceEeeCHHHHHHHHHHHHHHHHhhCCCCe
Confidence 12223345679999999999998876542 23444433 33455677899999999999999999999996543
Q ss_pred CCCCCCCCEEEEEEecCce-eEEEEEEcCCCCChhhHhhhhhcccccCCCCCCCCCCCCCCCCcccCHHHHHHHHHHhCC
Q psy14548 261 TDTDVLPPIEVSVVRGKED-ICVKMSDKGGGIPRSVTDMLFHYMYSTAPQPSKSDAHTVPLAGYGYGLPISRLYARYFHG 339 (482)
Q Consensus 261 ~~~~~~p~I~v~~~~~~~~-~~i~V~D~G~GI~~~~~~~if~~f~~t~~~~~~~~~~~~~~~G~GLGL~i~r~~~~~~gG 339 (482)
|.|.+...++. +.|.|+|+|+|||++.+++||++||++. ..+..+|+||||+|||.+++.|||
T Consensus 600 --------i~i~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~--------~~~~~~g~GLGL~i~~~l~~~~gG 663 (968)
T TIGR02956 600 --------VVLRVSLNDDSSLLFEVEDTGCGIAEEEQATLFDAFTQAD--------GRRRSGGTGLGLAISQRLVEAMDG 663 (968)
T ss_pred --------EEEEEEEcCCCeEEEEEEeCCCCCCHHHHHHHHhhhhccC--------CCCCCCCccHHHHHHHHHHHHcCC
Confidence 88888877777 9999999999999999999999999964 223447999999999999999999
Q ss_pred EEEEEeecCCcEEEEEEeeCCCC
Q psy14548 340 DIMLLSCDGLGTDAIIYLKALSN 362 (482)
Q Consensus 340 ~i~v~s~~g~Gt~f~i~lp~~~~ 362 (482)
+|.+.|.+|+||+|+|.||....
T Consensus 664 ~i~~~s~~~~Gt~f~~~lp~~~~ 686 (968)
T TIGR02956 664 ELGVESELGVGSCFWFTLPLTRG 686 (968)
T ss_pred EEEEEecCCCcEEEEEEEEcCCC
Confidence 99999999999999999997643
No 13
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=99.94 E-value=3e-25 Score=253.31 Aligned_cols=219 Identities=17% Similarity=0.193 Sum_probs=174.7
Q ss_pred HHHHHHHHHHHHHhhchhHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhhHHHHHHHHHHhhccccccCCCCCC
Q psy14548 103 LDKFCKALVKIRNRHSDVVQTMAQGVMELKDSHDVDHQTENSIQYFLDRFYMSRISIRMLINQHTLLFGDELTRGDSSLR 182 (482)
Q Consensus 103 ~~~f~~~l~~~l~~~~~~i~~la~g~~e~~~~~~~~~~~~e~~~~~Ld~i~~sri~~r~Li~~~l~L~~~~~~~~~~~~~ 182 (482)
..+|...++|++++|++.|...++.+.+ . ..+++..++++.+..+...+..++++.+.+.+... +
T Consensus 398 ~~~~~~~isHelrtPL~~i~~~~~~l~~----~----~~~~~~~~~~~~i~~~~~~l~~li~~ll~~~~~~~-------~ 462 (921)
T PRK15347 398 KSEHLTTISHEIRTPLNGVLGALELLQN----T----PLTAEQMDLADTARQCTLSLLAIINNLLDFSRIES-------G 462 (921)
T ss_pred HHHHHHHhHHHhchhHHHHHHHHHHHhc----C----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------C
Confidence 4578899999999999998776654322 1 12355678899999887777788999998886422 1
Q ss_pred cccccCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEeeccCCCCCeEEEechhHHHHHHHHHHHHHHHHhhhcCCC
Q psy14548 183 HIGCIDPQCDLIGVVKDAYENARFLCEQYYLSSPELKVTEHNEYEKGEPVRIIYVPSHLYHMLFELFKNSMRATVEHHTD 262 (482)
Q Consensus 183 ~ig~i~~~~~l~~li~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~L~~il~NLl~NAik~t~~~~~~ 262 (482)
........+++.+++++++..+...+.. ..+.+.+ .+++..+..+.+|+.+|.||+.||++||+||+..+.
T Consensus 463 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~-----~~~~~~~--~~~~~~~~~~~~d~~~l~~il~NLl~NAik~~~~g~-- 533 (921)
T PRK15347 463 QMTLSLEETALLPLLDQAMLTIQGPAQS-----KSLTLRT--FVGAHVPLYLHLDSLRLRQILVNLLGNAVKFTETGG-- 533 (921)
T ss_pred CccceecccCHHHHHHHHHHHHHHHHHH-----CCcEEEE--EECCCCCceEEECHHHHHHHHHHHHHHHhhcCCCCC--
Confidence 2223345679999999998887765432 2333333 233455678999999999999999999999996554
Q ss_pred CCCCCCEEEEEEecCceeEEEEEEcCCCCChhhHhhhhhcccccCCCCCCCCCCCCCCCCcccCHHHHHHHHHHhCCEEE
Q psy14548 263 TDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVTDMLFHYMYSTAPQPSKSDAHTVPLAGYGYGLPISRLYARYFHGDIM 342 (482)
Q Consensus 263 ~~~~p~I~v~~~~~~~~~~i~V~D~G~GI~~~~~~~if~~f~~t~~~~~~~~~~~~~~~G~GLGL~i~r~~~~~~gG~i~ 342 (482)
|.|.+...++.+.|+|+|+|+||+++.++++|++||+++. ..+|+||||+||+.+++.|||+|.
T Consensus 534 ------I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~----------~~~g~GLGL~i~~~~~~~~gG~i~ 597 (921)
T PRK15347 534 ------IRLRVKRHEQQLCFTVEDTGCGIDIQQQQQIFTPFYQADT----------HSQGTGLGLTIASSLAKMMGGELT 597 (921)
T ss_pred ------EEEEEEEcCCEEEEEEEEcCCCCCHHHHHHHhcCcccCCC----------CCCCCchHHHHHHHHHHHcCCEEE
Confidence 9999988889999999999999999999999999998542 236999999999999999999999
Q ss_pred EEeecCCcEEEEEEeeCCC
Q psy14548 343 LLSCDGLGTDAIIYLKALS 361 (482)
Q Consensus 343 v~s~~g~Gt~f~i~lp~~~ 361 (482)
++|.+|+||+|++.||...
T Consensus 598 i~s~~~~Gt~f~i~lp~~~ 616 (921)
T PRK15347 598 LFSTPGVGSCFSLVLPLNE 616 (921)
T ss_pred EEecCCCceEEEEEEECCC
Confidence 9999999999999999754
No 14
>PRK10604 sensor protein RstB; Provisional
Probab=99.94 E-value=7.8e-25 Score=229.54 Aligned_cols=232 Identities=14% Similarity=0.117 Sum_probs=167.8
Q ss_pred HHHHHHHHHcccccCCCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhhHHH
Q psy14548 82 YAMSFDEILEFEKADSNSTDTLDKFCKALVKIRNRHSDVVQTMAQGVMELKDSHDVDHQTENSIQYFLDRFYMSRISIRM 161 (482)
Q Consensus 82 y~~sf~~l~~~~~~~~~~~~~~~~f~~~l~~~l~~~~~~i~~la~g~~e~~~~~~~~~~~~e~~~~~Ld~i~~sri~~r~ 161 (482)
..++|++|....+. ..+..++|.+.++|++++|++.+...+.. .+.. ..++.+. +.+....+..
T Consensus 194 L~~~fn~m~~~l~~---~~~~~~~l~~~vsHeLrtPL~~i~~~l~~----l~~~-----~~~~~~~----i~~~~~~l~~ 257 (433)
T PRK10604 194 LGVAFNQMADNINA---LIASKKQLIDGIAHELRTPLVRLRYRLEM----SDNL-----SAAESQA----LNRDIGQLEA 257 (433)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHhhHhhcChHHHHHHHHHH----hcCC-----CcHHHHH----HHHHHHHHHH
Confidence 45566665543221 23345789999999999999988644432 2211 1222222 3333344556
Q ss_pred HHHHHHHhhccccccCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEeeccCCCCCeEEEechhHH
Q psy14548 162 LINQHTLLFGDELTRGDSSLRHIGCIDPQCDLIGVVKDAYENARFLCEQYYLSSPELKVTEHNEYEKGEPVRIIYVPSHL 241 (482)
Q Consensus 162 Li~~~l~L~~~~~~~~~~~~~~ig~i~~~~~l~~li~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~L 241 (482)
++++++.+.+.... ......+.+++.++++++++..+... .+..+.+... ..+..+.+|+..+
T Consensus 258 li~~ll~~~rl~~~-------~~~~~~~~~~l~~~l~~~i~~~~~~~-------~~~~i~~~~~---~~~~~~~~d~~~l 320 (433)
T PRK10604 258 LIEELLTYARLDRP-------QNELHLSEPDLPAWLSTHLADIQAVT-------PEKTVRLDTP---HQGDYGALDMRLM 320 (433)
T ss_pred HHHHHHHHHhccCC-------CcccCCCCCCHHHHHHHHHHHHHHHh-------hcCcEEEEec---CCCceEecCHHHH
Confidence 78888887754321 11222346699999999888776532 2334444332 2244577899999
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCCCCCEEEEEEecCceeEEEEEEcCCCCChhhHhhhhhcccccCCCCCCCCCCCCCCC
Q psy14548 242 YHMLFELFKNSMRATVEHHTDTDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVTDMLFHYMYSTAPQPSKSDAHTVPLA 321 (482)
Q Consensus 242 ~~il~NLl~NAik~t~~~~~~~~~~p~I~v~~~~~~~~~~i~V~D~G~GI~~~~~~~if~~f~~t~~~~~~~~~~~~~~~ 321 (482)
.+++.||++||++|+. +. |.|++...++.+.|.|+|+|+|||++.++++|++||+.. .+..+..+
T Consensus 321 ~~vl~NLl~NAik~~~-~~--------I~I~~~~~~~~~~I~V~D~G~Gi~~e~~~~if~~f~r~~------~~~~~~~~ 385 (433)
T PRK10604 321 ERVLDNLLNNALRYAH-SR--------VRVSLLLDGNQACLIVEDDGPGIPPEERERVFEPFVRLD------PSRDRATG 385 (433)
T ss_pred HHHHHHHHHHHHHhCC-Ce--------EEEEEEEECCEEEEEEEEcCCCCCHHHHhhcCCCCccCC------CCCCCCCC
Confidence 9999999999999983 22 899998888899999999999999999999999999943 23444557
Q ss_pred CcccCHHHHHHHHHHhCCEEEEEeecCCcEEEEEEeeCCC
Q psy14548 322 GYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLKALS 361 (482)
Q Consensus 322 G~GLGL~i~r~~~~~~gG~i~v~s~~g~Gt~f~i~lp~~~ 361 (482)
|+||||+||+.+++.|||++.+++.+++|++|++.+|...
T Consensus 386 g~GLGL~ivk~i~~~~gG~i~v~s~~~~G~~f~i~lP~~~ 425 (433)
T PRK10604 386 GCGLGLAIVHSIALAMGGSVNCDESELGGARFSFSWPVWH 425 (433)
T ss_pred CccchHHHHHHHHHHCCCEEEEEecCCCeeEEEEEEeCCC
Confidence 9999999999999999999999999999999999999754
No 15
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL. NifL is a modulator of the nitrogen fixation positive regulator protein NifA, and is therefore a negative regulator. It binds NifA. NifA and NifL are encoded by adjacent genes.
Probab=99.94 E-value=1e-24 Score=230.31 Aligned_cols=219 Identities=14% Similarity=0.111 Sum_probs=153.2
Q ss_pred HHHHHHHHHHHHHhhchhHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhhHHHHHHHHHHhhccccccCCCCCC
Q psy14548 103 LDKFCKALVKIRNRHSDVVQTMAQGVMELKDSHDVDHQTENSIQYFLDRFYMSRISIRMLINQHTLLFGDELTRGDSSLR 182 (482)
Q Consensus 103 ~~~f~~~l~~~l~~~~~~i~~la~g~~e~~~~~~~~~~~~e~~~~~Ld~i~~sri~~r~Li~~~l~L~~~~~~~~~~~~~ 182 (482)
..++...+.|.+++|++.|...+.-+.+... ..........+..+.... .-++..+..+.....
T Consensus 276 l~~~~~~~~h~lr~pL~~i~~~~~~l~~~~~-----~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~-------- 339 (494)
T TIGR02938 276 IRETLSAAIHRLQGPMNLISAAISVLQRRGD-----DAGNPASAAMLQQALSAG---REHMEALRQVIPQSP-------- 339 (494)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHHhccc-----cccCHHHHHHHHHHHHHH---HHHHHHHHHhhccCc--------
Confidence 3455666679999999998777664433211 112233444444433221 112222222221110
Q ss_pred cccccCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEeeccCCCCCeEEEechhHHHHHHHHHHHHHHHHhhhcCCC
Q psy14548 183 HIGCIDPQCDLIGVVKDAYENARFLCEQYYLSSPELKVTEHNEYEKGEPVRIIYVPSHLYHMLFELFKNSMRATVEHHTD 262 (482)
Q Consensus 183 ~ig~i~~~~~l~~li~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~L~~il~NLl~NAik~t~~~~~~ 262 (482)
......+++.+++++++..+..... .+.+.+.+.. +.. ...+.+|+.+|+||+.||+.||+||+..++.
T Consensus 340 --~~~~~~~dl~~~~~~~~~~~~~~~~-----~~~i~~~~~~--~~~-~~~v~~d~~~l~~vl~Nl~~NAik~~~~~~~- 408 (494)
T TIGR02938 340 --QEIVVPVNLNQILRDVITLSTPRLL-----AAGIVVDWQP--AAT-LPAILGRELQLRSLFKALVDNAIEAMNIKGW- 408 (494)
T ss_pred --ccccccccHHHHHHHHHHHhHHHHH-----hCCCEEEEec--CCC-CCeeecCHHHHHHHHHHHHHHHHHHhhccCC-
Confidence 1112467999999999887765332 2344444432 222 2357899999999999999999999977642
Q ss_pred CCCCCCEEEEEEecCceeEEEEEEcCCCCChhhHhhhhhcccccCCCCCCCCCCCCCCCCcccCHHHHHHHHHHhCCEEE
Q psy14548 263 TDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVTDMLFHYMYSTAPQPSKSDAHTVPLAGYGYGLPISRLYARYFHGDIM 342 (482)
Q Consensus 263 ~~~~p~I~v~~~~~~~~~~i~V~D~G~GI~~~~~~~if~~f~~t~~~~~~~~~~~~~~~G~GLGL~i~r~~~~~~gG~i~ 342 (482)
..+.|.|.+...++.+.|+|+|||+|||++.+++||++||+++.. ...|+||||+|||.+++.|||+|+
T Consensus 409 --~~~~i~i~~~~~~~~~~~~V~D~G~Gi~~~~~~~iF~~f~~~~~~---------~~~G~GlGL~i~~~iv~~~gG~i~ 477 (494)
T TIGR02938 409 --KRRELSITTALNGDLIVVSILDSGPGIPQDLRYKVFEPFFTTKGG---------SRKHIGMGLSVAQEIVADHGGIID 477 (494)
T ss_pred --CcceEEEEEEecCCEEEEEEEeCCCCCCHHHHHHhcCCCcccCCC---------CCCCCcccHHHHHHHHHHcCCEEE
Confidence 123478887888889999999999999999999999999997531 147999999999999999999999
Q ss_pred EEeecCCcEEEEEEeeC
Q psy14548 343 LLSCDGLGTDAIIYLKA 359 (482)
Q Consensus 343 v~s~~g~Gt~f~i~lp~ 359 (482)
++|.+|+||+|+|+||.
T Consensus 478 ~~s~~~~G~~f~i~lp~ 494 (494)
T TIGR02938 478 LDDDYSEGCRIIVEFRV 494 (494)
T ss_pred EEECCCCCEEEEEEecC
Confidence 99999999999999994
No 16
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=99.93 E-value=1e-24 Score=248.86 Aligned_cols=223 Identities=17% Similarity=0.154 Sum_probs=172.6
Q ss_pred HHHHHHHHHHHHHhhchhHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhhHHHHHHHHHHhhccccccCCCCCC
Q psy14548 103 LDKFCKALVKIRNRHSDVVQTMAQGVMELKDSHDVDHQTENSIQYFLDRFYMSRISIRMLINQHTLLFGDELTRGDSSLR 182 (482)
Q Consensus 103 ~~~f~~~l~~~l~~~~~~i~~la~g~~e~~~~~~~~~~~~e~~~~~Ld~i~~sri~~r~Li~~~l~L~~~~~~~~~~~~~ 182 (482)
..+|...++|++++|++.+..+++.+... ...+...++++.+..+...+..++++++.+.+... .
T Consensus 293 ~~~~l~~isHelrtPL~~i~~~~~~l~~~--------~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~-------~ 357 (919)
T PRK11107 293 KSEFLANMSHELRTPLNGVIGFTRQTLKT--------PLTPTQRDYLQTIERSANNLLAIINDILDFSKLEA-------G 357 (919)
T ss_pred HHHHHHHhhHhhcccHHHHHHHHHHHhcC--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------C
Confidence 35799999999999999987766544321 12356778999999887777788999998875422 1
Q ss_pred cccccCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEeeccCCCCCeEEEechhHHHHHHHHHHHHHHHHhhhcCCC
Q psy14548 183 HIGCIDPQCDLIGVVKDAYENARFLCEQYYLSSPELKVTEHNEYEKGEPVRIIYVPSHLYHMLFELFKNSMRATVEHHTD 262 (482)
Q Consensus 183 ~ig~i~~~~~l~~li~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~L~~il~NLl~NAik~t~~~~~~ 262 (482)
........+++.+++++++..+...+.. ..+.+.+. +++..+..+.+|+.+|.||+.||++||+||+..++
T Consensus 358 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~-----~~i~~~~~--~~~~~~~~~~~d~~~l~~vl~NLl~NAik~~~~g~-- 428 (919)
T PRK11107 358 KLVLENIPFSLRETLDEVVTLLAHSAHE-----KGLELTLN--IDPDVPDNVIGDPLRLQQIITNLVGNAIKFTESGN-- 428 (919)
T ss_pred CcEEEEeecCHHHHHHHHHHHHHHHHHH-----cCCEEEEE--eCCCCCceEEeCHHHHHHHHHHHHHHHhhcCCCCc--
Confidence 2223345679999999999988876543 23444333 33444567899999999999999999999997654
Q ss_pred CCCCCCEEEEEE--ecC---ceeEEEEEEcCCCCChhhHhhhhhcccccCCCCCCCCCCCCCCCCcccCHHHHHHHHHHh
Q psy14548 263 TDVLPPIEVSVV--RGK---EDICVKMSDKGGGIPRSVTDMLFHYMYSTAPQPSKSDAHTVPLAGYGYGLPISRLYARYF 337 (482)
Q Consensus 263 ~~~~p~I~v~~~--~~~---~~~~i~V~D~G~GI~~~~~~~if~~f~~t~~~~~~~~~~~~~~~G~GLGL~i~r~~~~~~ 337 (482)
|.|.+. ... ..+.|.|.|+|+|||++.++++|++||+.. .+..+..+|+||||+||+.+++.|
T Consensus 429 ------v~i~v~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~------~~~~~~~~g~GLGL~i~~~i~~~~ 496 (919)
T PRK11107 429 ------IDILVELRALSNTKVQLEVQIRDTGIGISERQQSQLFQAFRQAD------ASISRRHGGTGLGLVITQKLVNEM 496 (919)
T ss_pred ------EEEEEEEEecCCCeeEEEEEEEEeCCCcCHHHHHHHhhhhccCC------CCCCCCCCCcchhHHHHHHHHHHh
Confidence 555543 222 258899999999999999999999999843 334455679999999999999999
Q ss_pred CCEEEEEeecCCcEEEEEEeeCCC
Q psy14548 338 HGDIMLLSCDGLGTDAIIYLKALS 361 (482)
Q Consensus 338 gG~i~v~s~~g~Gt~f~i~lp~~~ 361 (482)
||+|.+.|.+|.||+|+|+||...
T Consensus 497 gG~i~v~s~~~~Gt~f~i~lp~~~ 520 (919)
T PRK11107 497 GGDISFHSQPNRGSTFWFHLPLDL 520 (919)
T ss_pred CCEEEEEecCCCCEEEEEEEEecc
Confidence 999999999999999999999753
No 17
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=99.93 E-value=1.7e-24 Score=246.93 Aligned_cols=222 Identities=17% Similarity=0.148 Sum_probs=174.6
Q ss_pred hHHHHHHHHHHHHHhhchhHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhhHHHHHHHHHHhhccccccCCCCC
Q psy14548 102 TLDKFCKALVKIRNRHSDVVQTMAQGVMELKDSHDVDHQTENSIQYFLDRFYMSRISIRMLINQHTLLFGDELTRGDSSL 181 (482)
Q Consensus 102 ~~~~f~~~l~~~l~~~~~~i~~la~g~~e~~~~~~~~~~~~e~~~~~Ld~i~~sri~~r~Li~~~l~L~~~~~~~~~~~~ 181 (482)
...+|...++|++++|++.+...++.+.+ . ...++..++++.+..+...+.-++++++.+.+.... .
T Consensus 443 ~~~~~l~~isHelrtPL~~i~~~~~ll~~----~----~~~~~~~~~l~~i~~~~~~l~~li~~ll~~s~~~~~-----~ 509 (914)
T PRK11466 443 AKSAFLAAMSHEIRTPLYGILGTAQLLAD----N----PALNAQRDDLRAITDSGESLLTILNDILDYSAIEAG-----G 509 (914)
T ss_pred HHHHHHHHhHHHHhhHHHHHHHHHHHHhC----C----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----C
Confidence 44679999999999999998776654321 1 123566788999987777777789999888753211 1
Q ss_pred CcccccCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEeeccCCCCCeEEEechhHHHHHHHHHHHHHHHHhhhcCC
Q psy14548 182 RHIGCIDPQCDLIGVVKDAYENARFLCEQYYLSSPELKVTEHNEYEKGEPVRIIYVPSHLYHMLFELFKNSMRATVEHHT 261 (482)
Q Consensus 182 ~~ig~i~~~~~l~~li~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~L~~il~NLl~NAik~t~~~~~ 261 (482)
..+......+++.+++++++..+...+.. ..+.+.. .+++..+..+.+|+.+|.||+.||+.||+||+..+.
T Consensus 510 ~~~~~~~~~~~l~~ll~~~~~~~~~~~~~-----~~i~~~~--~~~~~~~~~v~~d~~~l~qil~NLl~NAik~~~~g~- 581 (914)
T PRK11466 510 KNVSVSDEPFEPRPLLESTLQLMSGRVKG-----RPIRLAT--DIADDLPTALMGDPRRIRQVITNLLSNALRFTDEGS- 581 (914)
T ss_pred CcceecccccCHHHHHHHHHHHHHHHHHh-----CCcEEEE--EeCCCCCceEEECHHHHHHHHHHHHHHHHHhCCCCe-
Confidence 11223345679999999999988875442 2334433 333444567999999999999999999999986543
Q ss_pred CCCCCCCEEEEEEecCceeEEEEEEcCCCCChhhHhhhhhcccccCCCCCCCCCCCCCCCCcccCHHHHHHHHHHhCCEE
Q psy14548 262 DTDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVTDMLFHYMYSTAPQPSKSDAHTVPLAGYGYGLPISRLYARYFHGDI 341 (482)
Q Consensus 262 ~~~~~p~I~v~~~~~~~~~~i~V~D~G~GI~~~~~~~if~~f~~t~~~~~~~~~~~~~~~G~GLGL~i~r~~~~~~gG~i 341 (482)
|.|.+...++.+.|.|+|+|+|||++.++++|+|||++. ...+|+||||+||+.+++.|||+|
T Consensus 582 -------I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~----------~~~~g~GLGL~i~~~l~~~~gG~i 644 (914)
T PRK11466 582 -------IVLRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQPFVQVS----------GKRGGTGLGLTISSRLAQAMGGEL 644 (914)
T ss_pred -------EEEEEEEcCCEEEEEEEECCCCCCHHHHHHHhchhhcCC----------CCCCCCcccHHHHHHHHHHcCCEE
Confidence 899988888899999999999999999999999999843 223799999999999999999999
Q ss_pred EEEeecCCcEEEEEEeeCCC
Q psy14548 342 MLLSCDGLGTDAIIYLKALS 361 (482)
Q Consensus 342 ~v~s~~g~Gt~f~i~lp~~~ 361 (482)
.+.|.+|.||+|++.||...
T Consensus 645 ~v~s~~~~Gt~f~i~lP~~~ 664 (914)
T PRK11466 645 SATSTPEVGSCFCLRLPLRV 664 (914)
T ss_pred EEEecCCCCeEEEEEEEccc
Confidence 99999999999999999754
No 18
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=99.93 E-value=4.4e-24 Score=240.77 Aligned_cols=214 Identities=20% Similarity=0.255 Sum_probs=170.7
Q ss_pred hHHHHHHHHHHHHHhhchhHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhhHHHHHHHHHHhhccccccCCCCC
Q psy14548 102 TLDKFCKALVKIRNRHSDVVQTMAQGVMELKDSHDVDHQTENSIQYFLDRFYMSRISIRMLINQHTLLFGDELTRGDSSL 181 (482)
Q Consensus 102 ~~~~f~~~l~~~l~~~~~~i~~la~g~~e~~~~~~~~~~~~e~~~~~Ld~i~~sri~~r~Li~~~l~L~~~~~~~~~~~~ 181 (482)
...+|...++|++++|++.|...++.+.+... ..+...++++.+..+...+..++++++.+.+... .
T Consensus 449 ~l~~~~~~iaHeLrtPL~~I~~~~~~l~~~~~-------~~~~~~~~l~~i~~~~~rl~~li~~ll~~sr~~~----~-- 515 (828)
T PRK13837 449 AVGTLASGIAHNFNNILGAILGYAEMALNKLA-------RHSRAARYIDEIISAGARARLIIDQILAFGRKGE----R-- 515 (828)
T ss_pred HHHHHHHHhhHHhhhHHHHHHHHHHHHHhhcc-------CChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC----C--
Confidence 44579999999999999999877665443211 2357788899999887788889999998875321 1
Q ss_pred CcccccCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEeeccCCCCCeEEEechhHHHHHHHHHHHHHHHHhhhcCC
Q psy14548 182 RHIGCIDPQCDLIGVVKDAYENARFLCEQYYLSSPELKVTEHNEYEKGEPVRIIYVPSHLYHMLFELFKNSMRATVEHHT 261 (482)
Q Consensus 182 ~~ig~i~~~~~l~~li~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~L~~il~NLl~NAik~t~~~~~ 261 (482)
....+++.+++++++..++... ...+.+.+.. +..+..+.+|+..|.||+.||++||+||+.+++.
T Consensus 516 -----~~~~~~l~~ll~~~~~~~~~~~------~~~i~l~~~~---~~~~~~v~~d~~~L~qvl~NLl~NAik~~~~~g~ 581 (828)
T PRK13837 516 -----NTKPFDLSELVTEIAPLLRVSL------PPGVELDFDQ---DQEPAVVEGNPAELQQVLMNLCSNAAQAMDGAGR 581 (828)
T ss_pred -----CCcEEcHHHHHHHHHHHHHHHc------cCCcEEEEEe---CCCCceEEECHHHHHHHHHHHHHHHHHHcccCCe
Confidence 1235699999999888776421 2234444433 2335678999999999999999999999976654
Q ss_pred CCCCCCCEEEEEEec---------------CceeEEEEEEcCCCCChhhHhhhhhcccccCCCCCCCCCCCCCCCCcccC
Q psy14548 262 DTDVLPPIEVSVVRG---------------KEDICVKMSDKGGGIPRSVTDMLFHYMYSTAPQPSKSDAHTVPLAGYGYG 326 (482)
Q Consensus 262 ~~~~~p~I~v~~~~~---------------~~~~~i~V~D~G~GI~~~~~~~if~~f~~t~~~~~~~~~~~~~~~G~GLG 326 (482)
|.|++... ++.+.|.|+|+|+|||++.++++|++||+++. +|+|||
T Consensus 582 -------I~I~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~e~~~~iFe~F~~~~~------------~G~GLG 642 (828)
T PRK13837 582 -------VDISLSRAKLRAPKVLSHGVLPPGRYVLLRVSDTGAGIDEAVLPHIFEPFFTTRA------------GGTGLG 642 (828)
T ss_pred -------EEEEEEEeecccccccccccCCCCCEEEEEEEECCCCCCHHHHHHhhCCcccCCC------------CCCcch
Confidence 88877655 67899999999999999999999999998542 699999
Q ss_pred HHHHHHHHHHhCCEEEEEeecCCcEEEEEEeeCCC
Q psy14548 327 LPISRLYARYFHGDIMLLSCDGLGTDAIIYLKALS 361 (482)
Q Consensus 327 L~i~r~~~~~~gG~i~v~s~~g~Gt~f~i~lp~~~ 361 (482)
|+||+.+++.|||+|.+.|.+|.||+|+++||...
T Consensus 643 L~i~~~iv~~~gG~i~v~s~~g~Gt~f~i~LP~~~ 677 (828)
T PRK13837 643 LATVHGIVSAHAGYIDVQSTVGRGTRFDVYLPPSS 677 (828)
T ss_pred HHHHHHHHHHCCCEEEEEecCCCeEEEEEEEeCCC
Confidence 99999999999999999999999999999999754
No 19
>PRK10755 sensor protein BasS/PmrB; Provisional
Probab=99.93 E-value=1.1e-23 Score=214.82 Aligned_cols=216 Identities=16% Similarity=0.163 Sum_probs=154.7
Q ss_pred hhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhhHHHHHHHHHHhhccccccCCCC
Q psy14548 101 DTLDKFCKALVKIRNRHSDVVQTMAQGVMELKDSHDVDHQTENSIQYFLDRFYMSRISIRMLINQHTLLFGDELTRGDSS 180 (482)
Q Consensus 101 ~~~~~f~~~l~~~l~~~~~~i~~la~g~~e~~~~~~~~~~~~e~~~~~Ld~i~~sri~~r~Li~~~l~L~~~~~~~~~~~ 180 (482)
++.++|...++|++++|++.+...++.+.+. .........+++. .+...+++++.+.+........
T Consensus 135 ~~~~~~~~~~sHelrtPL~~i~~~~e~l~~~---------~~~~~~~~~~~~~----~l~~~i~~ll~~~r~~~~~~~~- 200 (356)
T PRK10755 135 DQERLFTADVAHELRTPLAGIRLHLELLEKQ---------HHIDVAPLIARLD----QMMHTVEQLLQLARAGQSFSSG- 200 (356)
T ss_pred HHHHHHHHHhhHhhcChHHHHHHHHHHHHhc---------cchhHHHHHHHHH----HHHHHHHHHHHHHHcccccccc-
Confidence 3456799999999999999887666433211 1122222333322 2233466666666432111011
Q ss_pred CCcccccCCCCCH-HHHHHHHHHHHHHHHHHhhcCCCCceEEEeeccCCCCCeEEEechhHHHHHHHHHHHHHHHHhhhc
Q psy14548 181 LRHIGCIDPQCDL-IGVVKDAYENARFLCEQYYLSSPELKVTEHNEYEKGEPVRIIYVPSHLYHMLFELFKNSMRATVEH 259 (482)
Q Consensus 181 ~~~ig~i~~~~~l-~~li~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~L~~il~NLl~NAik~t~~~ 259 (482)
....+++ .+++..+.......+.. ..+.+.+.. ...+..+.+|+..+.+++.||++||+||+.++
T Consensus 201 ------~~~~~~l~~~~i~~~~~~~~~~~~~-----~~~~~~~~~---~~~~~~v~~d~~~l~~il~nLi~NA~k~~~~~ 266 (356)
T PRK10755 201 ------HYQTVKLLEDVILPSQDELSEMLEQ-----RQQTLLLPE---SAADITVQGDATLLRLLLRNLVENAHRYSPEG 266 (356)
T ss_pred ------cchhhhHHHHHHHHHHHHHHHHHHH-----hCCeEEecc---CCCceEEEECHHHHHHHHHHHHHHHHhhCCCC
Confidence 1123466 77777766666655442 233443311 23457789999999999999999999998665
Q ss_pred CCCCCCCCCEEEEEEecCceeEEEEEEcCCCCChhhHhhhhhcccccCCCCCCCCCCCCCCCCcccCHHHHHHHHHHhCC
Q psy14548 260 HTDTDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVTDMLFHYMYSTAPQPSKSDAHTVPLAGYGYGLPISRLYARYFHG 339 (482)
Q Consensus 260 ~~~~~~~p~I~v~~~~~~~~~~i~V~D~G~GI~~~~~~~if~~f~~t~~~~~~~~~~~~~~~G~GLGL~i~r~~~~~~gG 339 (482)
+. |.|.+...++.+.|.|+|+|+||+++.++++|++||+.. ...+|+||||+||+.+++.|||
T Consensus 267 ~~-------I~I~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~----------~~~~g~GlGL~i~~~i~~~~gg 329 (356)
T PRK10755 267 ST-------ITIKLSQEDGGAVLAVEDEGPGIDESKCGELSKAFVRMD----------SRYGGIGLGLSIVSRITQLHHG 329 (356)
T ss_pred Cc-------EEEEEEEcCCEEEEEEEECCCCCCHHHHHHhCCCeEeCC----------CCCCCcCHHHHHHHHHHHHCCC
Confidence 43 999998888999999999999999999999999999843 2236899999999999999999
Q ss_pred EEEEEeecC-CcEEEEEEeeCCC
Q psy14548 340 DIMLLSCDG-LGTDAIIYLKALS 361 (482)
Q Consensus 340 ~i~v~s~~g-~Gt~f~i~lp~~~ 361 (482)
+++++|.++ .||+|++.||...
T Consensus 330 ~i~i~s~~~~~Gt~~~i~~p~~~ 352 (356)
T PRK10755 330 QFFLQNRQERSGTRAWVWLPKAQ 352 (356)
T ss_pred EEEEEECCCCCeEEEEEEecCCC
Confidence 999999998 9999999999753
No 20
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional
Probab=99.93 E-value=1.1e-23 Score=222.26 Aligned_cols=240 Identities=15% Similarity=0.164 Sum_probs=171.4
Q ss_pred HHHHHHHHHHcccccCCCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhhHH
Q psy14548 81 WYAMSFDEILEFEKADSNSTDTLDKFCKALVKIRNRHSDVVQTMAQGVMELKDSHDVDHQTENSIQYFLDRFYMSRISIR 160 (482)
Q Consensus 81 ~y~~sf~~l~~~~~~~~~~~~~~~~f~~~l~~~l~~~~~~i~~la~g~~e~~~~~~~~~~~~e~~~~~Ld~i~~sri~~r 160 (482)
...++|++|....+. ..+...+|...++|++++|++.+...++.+.+... ....+. +..+......+.
T Consensus 221 ~l~~~~n~m~~~l~~---~~~~~~~~~~~~shel~~pL~~i~~~~~~l~~~~~-----~~~~~~----l~~~~~~~~~l~ 288 (466)
T PRK10549 221 RLAQDFNQLASTLEK---NEQMRRDFMADISHELRTPLAVLRGELEAIQDGVR-----KFTPES----VASLQAEVGTLT 288 (466)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHhHHhCChHHHHHHHHHHHHhccc-----cCCHHH----HHHHHHHHHHHH
Confidence 356777766554332 23445789999999999999998776665543211 112333 333332223333
Q ss_pred HHHHHHHHhhccccccCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEeeccCCCCCeEEEechhH
Q psy14548 161 MLINQHTLLFGDELTRGDSSLRHIGCIDPQCDLIGVVKDAYENARFLCEQYYLSSPELKVTEHNEYEKGEPVRIIYVPSH 240 (482)
Q Consensus 161 ~Li~~~l~L~~~~~~~~~~~~~~ig~i~~~~~l~~li~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~ 240 (482)
.+++++..+.... ..........+++.++++.++...+..... .++.+.+.. +.+..+.+|+..
T Consensus 289 ~li~~l~~l~~~~-------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-----~~i~i~~~~----~~~~~~~~d~~~ 352 (466)
T PRK10549 289 KLVDDLHQLSLSD-------EGALAYRKTPVDLVPLLEVAGGAFRERFAS-----RGLTLQLSL----PDSATVFGDPDR 352 (466)
T ss_pred HHHHHHHHHHhhc-------CCCcccccCCCCHHHHHHHHHHHHHHHHHH-----CCcEEEEec----CCCcEEEeCHHH
Confidence 4556655554321 111222345669999999988877754321 234444322 234567899999
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCCCCCCEEEEEEecCceeEEEEEEcCCCCChhhHhhhhhcccccCCCCCCCCCCCCCC
Q psy14548 241 LYHMLFELFKNSMRATVEHHTDTDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVTDMLFHYMYSTAPQPSKSDAHTVPL 320 (482)
Q Consensus 241 L~~il~NLl~NAik~t~~~~~~~~~~p~I~v~~~~~~~~~~i~V~D~G~GI~~~~~~~if~~f~~t~~~~~~~~~~~~~~ 320 (482)
+.|++.||+.||++|+.+++. |.|.+...++.+.|.|.|+|+|||++.++++|++||++.. +.....
T Consensus 353 l~qvl~nll~NAi~~~~~~~~-------I~i~~~~~~~~~~i~V~D~G~Gi~~e~~~~lf~~~~~~~~------~~~~~~ 419 (466)
T PRK10549 353 LMQLFNNLLENSLRYTDSGGS-------LHISAEQRDKTLRLTFADSAPGVSDEQLQKLFERFYRTEG------SRNRAS 419 (466)
T ss_pred HHHHHHHHHHHHHHhCCCCCE-------EEEEEEEcCCEEEEEEEecCCCcCHHHHHHhccCcccCCC------CcCCCC
Confidence 999999999999999876554 9999998999999999999999999999999999998642 123344
Q ss_pred CCcccCHHHHHHHHHHhCCEEEEEeecCCcEEEEEEeeCCC
Q psy14548 321 AGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLKALS 361 (482)
Q Consensus 321 ~G~GLGL~i~r~~~~~~gG~i~v~s~~g~Gt~f~i~lp~~~ 361 (482)
+|+||||++|+.+++.|||++.++|.+++||+|++.||...
T Consensus 420 ~g~GlGL~iv~~i~~~~~G~l~~~s~~~~G~~~~i~lP~~~ 460 (466)
T PRK10549 420 GGSGLGLAICLNIVEAHNGRIIAAHSPFGGVSITVELPLER 460 (466)
T ss_pred CCCcHHHHHHHHHHHHcCCEEEEEECCCCeEEEEEEccCCC
Confidence 69999999999999999999999999999999999999754
No 21
>PRK10364 sensor protein ZraS; Provisional
Probab=99.93 E-value=8.7e-24 Score=222.99 Aligned_cols=215 Identities=15% Similarity=0.217 Sum_probs=167.3
Q ss_pred hHHHHHHHHHHHHHhhchhHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhhHHHHHHHHHHhhccccccCCCCC
Q psy14548 102 TLDKFCKALVKIRNRHSDVVQTMAQGVMELKDSHDVDHQTENSIQYFLDRFYMSRISIRMLINQHTLLFGDELTRGDSSL 181 (482)
Q Consensus 102 ~~~~f~~~l~~~l~~~~~~i~~la~g~~e~~~~~~~~~~~~e~~~~~Ld~i~~sri~~r~Li~~~l~L~~~~~~~~~~~~ 181 (482)
...+|...++|++++|++.+..+++.+.+... ..++.+++++.+......++.++++++.+.+... .
T Consensus 236 ~~~~~~~~laHelrtpL~~i~~~~~~l~~~~~-------~~~~~~~~~~~i~~~~~~l~~~i~~ll~~~~~~~----~-- 302 (457)
T PRK10364 236 ALGHLAAGVAHEIRNPLSSIKGLAKYFAERAP-------AGGEAHQLAQVMAKEADRLNRVVSELLELVKPTH----L-- 302 (457)
T ss_pred HHHHHHHHhhHHhccHHHHHHHHHHHHHhhcc-------CchHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCC----C--
Confidence 34568889999999999999887765443211 2345566777777666666777888887765211 1
Q ss_pred CcccccCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEeeccCCCCCeEEEechhHHHHHHHHHHHHHHHHhhhcCC
Q psy14548 182 RHIGCIDPQCDLIGVVKDAYENARFLCEQYYLSSPELKVTEHNEYEKGEPVRIIYVPSHLYHMLFELFKNSMRATVEHHT 261 (482)
Q Consensus 182 ~~ig~i~~~~~l~~li~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~L~~il~NLl~NAik~t~~~~~ 261 (482)
....+++.+++++++..+...+.. ..+.+.+.. ++ ....+.+|+..|.+++.||++||+||+..++.
T Consensus 303 -----~~~~~~l~~~l~~~~~~~~~~~~~-----~~i~l~~~~--~~-~~~~~~~d~~~l~~il~NLl~NA~k~~~~~~~ 369 (457)
T PRK10364 303 -----ALQAVDLNDLINHSLQLVSQDANS-----REIQLRFTA--ND-TLPEIQADPDRLTQVLLNLYLNAIQAIGQHGV 369 (457)
T ss_pred -----cceEecHHHHHHHHHHHHHHHHHh-----cCeEEEEEc--CC-CCceEEECHHHHHHHHHHHHHHHHHhcCCCCe
Confidence 123458999999988887765442 234444432 22 23457899999999999999999999865443
Q ss_pred CCCCCCCEEEEEEecCceeEEEEEEcCCCCChhhHhhhhhcccccCCCCCCCCCCCCCCCCcccCHHHHHHHHHHhCCEE
Q psy14548 262 DTDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVTDMLFHYMYSTAPQPSKSDAHTVPLAGYGYGLPISRLYARYFHGDI 341 (482)
Q Consensus 262 ~~~~~p~I~v~~~~~~~~~~i~V~D~G~GI~~~~~~~if~~f~~t~~~~~~~~~~~~~~~G~GLGL~i~r~~~~~~gG~i 341 (482)
|.|.+...++.+.|.|.|+|+|||++.++++|++||+++. .|+||||++|+.+++.|||++
T Consensus 370 -------I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~~~~~k~------------~g~GlGL~iv~~~v~~~gG~i 430 (457)
T PRK10364 370 -------ISVTASESGAGVKISVTDSGKGIAADQLEAIFTPYFTTKA------------EGTGLGLAVVHNIVEQHGGTI 430 (457)
T ss_pred -------EEEEEEEeCCeEEEEEEECCCCCCHHHHHHHhCccccCCC------------CCCcccHHHHHHHHHHCCCEE
Confidence 9999988888899999999999999999999999998542 589999999999999999999
Q ss_pred EEEeecCCcEEEEEEeeCCC
Q psy14548 342 MLLSCDGLGTDAIIYLKALS 361 (482)
Q Consensus 342 ~v~s~~g~Gt~f~i~lp~~~ 361 (482)
.+.|.+++||+|+++||...
T Consensus 431 ~i~s~~~~Gt~f~i~lP~~~ 450 (457)
T PRK10364 431 QVASQEGKGATFTLWLPVNI 450 (457)
T ss_pred EEEeCCCCcEEEEEEecCCC
Confidence 99999999999999999753
No 22
>PRK10490 sensor protein KdpD; Provisional
Probab=99.93 E-value=5.7e-24 Score=240.13 Aligned_cols=221 Identities=14% Similarity=0.065 Sum_probs=165.2
Q ss_pred HHHHHHHHHHHHHhhchhHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhhHHHHHHHHHHhhccccccCCCCCC
Q psy14548 103 LDKFCKALVKIRNRHSDVVQTMAQGVMELKDSHDVDHQTENSIQYFLDRFYMSRISIRMLINQHTLLFGDELTRGDSSLR 182 (482)
Q Consensus 103 ~~~f~~~l~~~l~~~~~~i~~la~g~~e~~~~~~~~~~~~e~~~~~Ld~i~~sri~~r~Li~~~l~L~~~~~~~~~~~~~ 182 (482)
..+|...++|++++|++.|...++.+..... .......+.++.+......+..++++++.+.+....
T Consensus 664 r~~lla~isHELrtPLt~I~g~~~lL~~~l~------~~~~~~~~~~~~i~~~~~~l~~li~~LL~~srl~~~------- 730 (895)
T PRK10490 664 RNALLAALSHDLRTPLTVLFGQAEILTLDLA------SEGSPHARQASEIRQQVLNTTRLVNNLLDMARIQSG------- 730 (895)
T ss_pred HHHHHHHhHHHHhHHHHHHHHHHHHHhhccc------ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-------
Confidence 3578999999999999999876654332111 011223345566665544555578888887754321
Q ss_pred cccccCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEeeccCCCCCeEEEechhHHHHHHHHHHHHHHHHhhhcCCC
Q psy14548 183 HIGCIDPQCDLIGVVKDAYENARFLCEQYYLSSPELKVTEHNEYEKGEPVRIIYVPSHLYHMLFELFKNSMRATVEHHTD 262 (482)
Q Consensus 183 ~ig~i~~~~~l~~li~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~L~~il~NLl~NAik~t~~~~~~ 262 (482)
........+++.++++++++.+.... ....+.+.. +.....+.+|+..|.||+.||++||+||+++++.
T Consensus 731 ~~~l~~~~~~L~eli~~~l~~l~~~~-------~~~~i~l~~---~~~~~~v~~D~~~L~qVL~NLL~NAik~s~~g~~- 799 (895)
T PRK10490 731 GFNLRKEWLTLEEVVGSALQMLEPGL-------SGHPINLSL---PEPLTLIHVDGPLFERVLINLLENAVKYAGAQAE- 799 (895)
T ss_pred CCcccccccCHHHHHHHHHHHHHHHh-------cCCCEEEEc---CCCCeEEEECHHHHHHHHHHHHHHHHHhCCCCCe-
Confidence 12222345689999999888776532 223344332 2233468999999999999999999999976653
Q ss_pred CCCCCCEEEEEEecCceeEEEEEEcCCCCChhhHhhhhhcccccCCCCCCCCCCCCCCCCcccCHHHHHHHHHHhCCEEE
Q psy14548 263 TDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVTDMLFHYMYSTAPQPSKSDAHTVPLAGYGYGLPISRLYARYFHGDIM 342 (482)
Q Consensus 263 ~~~~p~I~v~~~~~~~~~~i~V~D~G~GI~~~~~~~if~~f~~t~~~~~~~~~~~~~~~G~GLGL~i~r~~~~~~gG~i~ 342 (482)
|.|.+...++.+.|.|+|+|+|||++.++++|++||++.. .....|+||||+|||.+++.|||+|+
T Consensus 800 ------I~I~~~~~~~~v~I~V~D~G~GI~~e~~~~IFepF~~~~~--------~~~~~G~GLGL~Ivk~ive~hGG~I~ 865 (895)
T PRK10490 800 ------IGIDAHVEGERLQLDVWDNGPGIPPGQEQLIFDKFARGNK--------ESAIPGVGLGLAICRAIVEVHGGTIW 865 (895)
T ss_pred ------EEEEEEEeCCEEEEEEEECCCCCCHHHHHHhcCCCccCCC--------CCCCCCccHHHHHHHHHHHHcCCEEE
Confidence 8999988888999999999999999999999999998542 12346999999999999999999999
Q ss_pred EEeecCCcEEEEEEeeCCC
Q psy14548 343 LLSCDGLGTDAIIYLKALS 361 (482)
Q Consensus 343 v~s~~g~Gt~f~i~lp~~~ 361 (482)
+.|.+++||+|++.||...
T Consensus 866 v~s~~~~Gt~f~i~LPl~~ 884 (895)
T PRK10490 866 AENRPEGGACFRVTLPLET 884 (895)
T ss_pred EEECCCCeEEEEEEeECCC
Confidence 9999999999999999753
No 23
>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase. This histidine kinase protein is paired with an adjacent response regulator (TIGR03787) gene. It co-occurs with a variant sortase enzyme (TIGR03784), usually in the same gene neighborhood, in proteobacterial species most of which are marine, and with an LPXTG motif-containing sortase target conserved protein (TIGR03788). Sortases and LPXTG proteins are far more common in Gram-positive bacteria, where sortase systems mediate attachment to the cell wall or cross-linking of pilin structures. We give this predicted sensor histidine kinase the gene symbol psdS, for Proteobacterial Dedicated Sortase system Sensor histidine kinase.
Probab=99.92 E-value=1.7e-23 Score=230.94 Aligned_cols=236 Identities=20% Similarity=0.210 Sum_probs=177.2
Q ss_pred HHHHHHHHHcccccCCCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhhHHH
Q psy14548 82 YAMSFDEILEFEKADSNSTDTLDKFCKALVKIRNRHSDVVQTMAQGVMELKDSHDVDHQTENSIQYFLDRFYMSRISIRM 161 (482)
Q Consensus 82 y~~sf~~l~~~~~~~~~~~~~~~~f~~~l~~~l~~~~~~i~~la~g~~e~~~~~~~~~~~~e~~~~~Ld~i~~sri~~r~ 161 (482)
..++|++|....+. ..+..+.|...++|++++|++.+...++.+... ...++..++++.+..+...+..
T Consensus 467 La~afn~M~~~L~~---~~~~l~~~s~~lSHELrtPL~~I~~~le~L~~~--------~~~~~~~~~le~i~~~i~~L~~ 535 (703)
T TIGR03785 467 LSRSFAQMVARLRQ---YTHYLENMSSRLSHELRTPVAVVRSSLENLELQ--------ALEQEKQKYLERAREGTERLSM 535 (703)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc--------CCCHHHHHHHHHHHHHHHHHHH
Confidence 56677766543222 234567899999999999999987766543221 1235566788888776666667
Q ss_pred HHHHHHHhhccccccCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEeeccCCCCCeEEEechhHH
Q psy14548 162 LINQHTLLFGDELTRGDSSLRHIGCIDPQCDLIGVVKDAYENARFLCEQYYLSSPELKVTEHNEYEKGEPVRIIYVPSHL 241 (482)
Q Consensus 162 Li~~~l~L~~~~~~~~~~~~~~ig~i~~~~~l~~li~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~L 241 (482)
+++++..+.+.... ......+.+++.++++++++..+..+. +..+.+.. +..+..+.+|+..|
T Consensus 536 li~~l~~~arle~~-------~~~~~~~~~dl~~ll~~~i~~~~~~~~-------~~~i~l~i---~~~~~~i~~d~~~L 598 (703)
T TIGR03785 536 ILNNMSEATRLEQA-------IQSAEVEDFDLSEVLSGCMQGYQMTYP-------PQRFELNI---PETPLVMRGSPELI 598 (703)
T ss_pred HHHHHHHHHhhhcc-------cccccceeecHHHHHHHHHHHHHHHhh-------cCCEEEEe---cCCCeEEEECHHHH
Confidence 78877776643211 111123467999999999988776432 33344333 22345789999999
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCCCCCEEEEEEecCceeEEEEEEcCCCCChhhHhhhhhcccccCCCCCCCCCCCCCCC
Q psy14548 242 YHMLFELFKNSMRATVEHHTDTDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVTDMLFHYMYSTAPQPSKSDAHTVPLA 321 (482)
Q Consensus 242 ~~il~NLl~NAik~t~~~~~~~~~~p~I~v~~~~~~~~~~i~V~D~G~GI~~~~~~~if~~f~~t~~~~~~~~~~~~~~~ 321 (482)
.+++.||++||+||+++++. |.|.+...++.+.|.|+|+|+||+++.++++|++||+++.. ......
T Consensus 599 ~~il~NLI~NAik~s~~~~~-------I~I~~~~~~~~v~I~V~D~G~GI~~e~~~~IFe~F~t~~~~------~~~~~~ 665 (703)
T TIGR03785 599 AQMLDKLVDNAREFSPEDGL-------IEVGLSQNKSHALLTVSNEGPPLPEDMGEQLFDSMVSVRDQ------GAQDQP 665 (703)
T ss_pred HHHHHHHHHHHHHHCCCCCe-------EEEEEEEcCCEEEEEEEEcCCCCCHHHHHHHhCCCeecCCC------CCCCCC
Confidence 99999999999999976553 99999888899999999999999999999999999986531 222335
Q ss_pred CcccCHHHHHHHHHHhCCEEEEEeecC-CcEEEEEEee
Q psy14548 322 GYGYGLPISRLYARYFHGDIMLLSCDG-LGTDAIIYLK 358 (482)
Q Consensus 322 G~GLGL~i~r~~~~~~gG~i~v~s~~g-~Gt~f~i~lp 358 (482)
|+||||+|||.+++.|||+|.+.+..+ .|++|+|+||
T Consensus 666 g~GLGL~Ivr~Iv~~~gG~I~v~s~~~g~Gt~f~I~LP 703 (703)
T TIGR03785 666 HLGLGLYIVRLIADFHQGRIQAENRQQNDGVVFRISLP 703 (703)
T ss_pred CccHHHHHHHHHHHHcCCEEEEEECCCCCeEEEEEEeC
Confidence 899999999999999999999999865 8999999997
No 24
>TIGR01386 cztS_silS_copS heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (Pfam:PF00512) and a domain found in bacterial signal proteins (Pfam:PF00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.
Probab=99.92 E-value=2.1e-23 Score=218.92 Aligned_cols=236 Identities=19% Similarity=0.192 Sum_probs=176.6
Q ss_pred HHHHHHHHHHcccccCCCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhhHH
Q psy14548 81 WYAMSFDEILEFEKADSNSTDTLDKFCKALVKIRNRHSDVVQTMAQGVMELKDSHDVDHQTENSIQYFLDRFYMSRISIR 160 (482)
Q Consensus 81 ~y~~sf~~l~~~~~~~~~~~~~~~~f~~~l~~~l~~~~~~i~~la~g~~e~~~~~~~~~~~~e~~~~~Ld~i~~sri~~r 160 (482)
...++|+.|...... ..++..+|.+.++|++++|++.+...++.+.+. ....++..++++.+......+.
T Consensus 222 ~l~~~~n~m~~~l~~---~~~~~~~~~~~~~h~l~tpl~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~l~ 291 (457)
T TIGR01386 222 ELAQSFNAMLGRLED---AFQRLSQFSADLAHELRTPLTNLLGQTQVALSQ-------PRTGEEYREVLESNLEELERLS 291 (457)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHhhhhhhcCcHHHHHHHHHHHHcC-------CCCHHHHHHHHHHHHHHHHHHH
Confidence 356677776654332 244567899999999999999886655433221 1234566677777665545555
Q ss_pred HHHHHHHHhhccccccCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEeeccCCCCCeEEEechhH
Q psy14548 161 MLINQHTLLFGDELTRGDSSLRHIGCIDPQCDLIGVVKDAYENARFLCEQYYLSSPELKVTEHNEYEKGEPVRIIYVPSH 240 (482)
Q Consensus 161 ~Li~~~l~L~~~~~~~~~~~~~~ig~i~~~~~l~~li~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~ 240 (482)
.++++++.+.+......+. ....+++.++++++.+.+..++.. ..+.+.+. .+..+.+|+..
T Consensus 292 ~~i~~ll~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~-----~~i~~~~~------~~~~~~~~~~~ 353 (457)
T TIGR01386 292 RMVSDMLFLARADNGQLAL-------ERVRLDLAAELAKVAEYFEPLAEE-----RGVRIRVE------GEGLVRGDPQM 353 (457)
T ss_pred HHHHHHHHHHHhhcccccc-------cccccCHHHHHHHHHHHHHHHHHh-----CCeEEEec------CCceEEECHHH
Confidence 5788888877543211111 223569999999998888765442 23444432 12678999999
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCCCCCCEEEEEEecCceeEEEEEEcCCCCChhhHhhhhhcccccCCCCCCCCCCCCCC
Q psy14548 241 LYHMLFELFKNSMRATVEHHTDTDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVTDMLFHYMYSTAPQPSKSDAHTVPL 320 (482)
Q Consensus 241 L~~il~NLl~NAik~t~~~~~~~~~~p~I~v~~~~~~~~~~i~V~D~G~GI~~~~~~~if~~f~~t~~~~~~~~~~~~~~ 320 (482)
|.+++.||+.||+||+.+++. |.|.+...++.+.|+|.|+|.|||++.++++|++||+++.. .....
T Consensus 354 l~~~~~nll~Nai~~~~~~~~-------I~i~~~~~~~~~~i~v~D~G~g~~~~~~~~~~~~~~~~~~~------~~~~~ 420 (457)
T TIGR01386 354 FRRAISNLLSNALRHTPDGGT-------ITVRIERRSDEVRVSVSNPGPGIPPEHLSRLFDRFYRVDPA------RSNSG 420 (457)
T ss_pred HHHHHHHHHHHHHHcCCCCce-------EEEEEEecCCEEEEEEEeCCCCCCHHHHHHhccccccCCcc------cCCCC
Confidence 999999999999999866543 99999988899999999999999999999999999996532 23345
Q ss_pred CCcccCHHHHHHHHHHhCCEEEEEeecCCcEEEEEEee
Q psy14548 321 AGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLK 358 (482)
Q Consensus 321 ~G~GLGL~i~r~~~~~~gG~i~v~s~~g~Gt~f~i~lp 358 (482)
.|+||||+||+.+++.|||++.+.+ +++||+|++.||
T Consensus 421 ~g~GlGL~i~~~~~~~~~G~~~~~~-~~~G~~~~~~~P 457 (457)
T TIGR01386 421 EGTGLGLAIVRSIMEAHGGRASAES-PDGKTRFILRFP 457 (457)
T ss_pred CCccccHHHHHHHHHHCCCEEEEEe-CCCceEEEEecC
Confidence 7999999999999999999999999 999999999997
No 25
>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]
Probab=99.92 E-value=6.8e-24 Score=217.72 Aligned_cols=225 Identities=17% Similarity=0.146 Sum_probs=176.9
Q ss_pred CchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhhHHHHHHHHHHhhccccccCC
Q psy14548 99 STDTLDKFCKALVKIRNRHSDVVQTMAQGVMELKDSHDVDHQTENSIQYFLDRFYMSRISIRMLINQHTLLFGDELTRGD 178 (482)
Q Consensus 99 ~~~~~~~f~~~l~~~l~~~~~~i~~la~g~~e~~~~~~~~~~~~e~~~~~Ld~i~~sri~~r~Li~~~l~L~~~~~~~~~ 178 (482)
.+.++++|...++|.+++|++.|..+++.+.+-.. ...+++..+|+..+.+....++.|+++.+..++.....
T Consensus 520 sn~el~~f~yv~sHdlqePl~~I~~~a~lL~~~~~-----~~~d~~~~~~i~~~~~~~~~~~~lidd~l~~s~l~~~~-- 592 (750)
T COG4251 520 SNAELRAFAYVASHDLQEPLRQISNYAQLLSERYS-----DALDEEAKEFITFISRLTSLMQQLIDDLLTYSKLGLTE-- 592 (750)
T ss_pred hhHHHHHHHHHhhhhhhHHHHHHHHHHHhhhhccc-----cccChHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccc--
Confidence 46778999999999999999999999986655321 22457788888877766666677888877776432110
Q ss_pred CCCCcccccCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEeeccCCCCCeEEEechhHHHHHHHHHHHHHHHHhhh
Q psy14548 179 SSLRHIGCIDPQCDLIGVVKDAYENARFLCEQYYLSSPELKVTEHNEYEKGEPVRIIYVPSHLYHMLFELFKNSMRATVE 258 (482)
Q Consensus 179 ~~~~~ig~i~~~~~l~~li~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~L~~il~NLl~NAik~t~~ 258 (482)
.--+..++.+++.++...... ...+..+++.+. + -..+.+|+..+.|++.||+.||+||...
T Consensus 593 -------~~l~~td~~~vv~~vl~~l~~-------ri~dtgaei~i~--~--lp~v~~d~~~l~qv~~NLi~Naik~~~~ 654 (750)
T COG4251 593 -------APLQPTDVQKVVDKVLLELSQ-------RIADTGAEIRIA--P--LPVVAADATQLGQVFQNLIANAIKFGGP 654 (750)
T ss_pred -------CCCCCcchHHHHHHHHHhccc-------ccccccceEEec--c--cceeecCHHHHHHHHHHHHhhheecCCC
Confidence 111245888999888877665 233434443331 2 3468999999999999999999999855
Q ss_pred cCCCCCCCCCEEEEEEecCceeEEEEEEcCCCCChhhHhhhhhcccccCCCCCCCCCCCCCCCCcccCHHHHHHHHHHhC
Q psy14548 259 HHTDTDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVTDMLFHYMYSTAPQPSKSDAHTVPLAGYGYGLPISRLYARYFH 338 (482)
Q Consensus 259 ~~~~~~~~p~I~v~~~~~~~~~~i~V~D~G~GI~~~~~~~if~~f~~t~~~~~~~~~~~~~~~G~GLGL~i~r~~~~~~g 338 (482)
.. |+|.|+....++.+++.|.|+|.||++...++||..|.+.. ......|+|+||+|||.|++.|+
T Consensus 655 e~------~~i~I~~~r~ed~~t~sV~dng~Gi~~a~~~riF~iFqRl~--------s~~~y~gtG~GL~I~kkI~e~H~ 720 (750)
T COG4251 655 EN------PDIEISAERQEDEWTFSVRDNGIGIDPAYFERIFVIFQRLH--------SRDEYLGTGLGLAICKKIAERHQ 720 (750)
T ss_pred CC------CceEEeeeccCCceEEEecCCCCCcCHHHHHHHHHHHHhcC--------chhhhcCCCccHHHHHHHHHHhC
Confidence 42 55999998999999999999999999999999999998854 23455789999999999999999
Q ss_pred CEEEEEeecCCcEEEEEEeeCCCC
Q psy14548 339 GDIMLLSCDGLGTDAIIYLKALSN 362 (482)
Q Consensus 339 G~i~v~s~~g~Gt~f~i~lp~~~~ 362 (482)
|.|+++|.+|.|+||++++|....
T Consensus 721 G~i~vEs~~gEgsTF~f~lp~~~~ 744 (750)
T COG4251 721 GRIWVESTPGEGSTFYFTLPVGGE 744 (750)
T ss_pred ceEEEeecCCCceeEEEEeecCCc
Confidence 999999999999999999997654
No 26
>PRK09835 sensor kinase CusS; Provisional
Probab=99.92 E-value=7.3e-23 Score=216.75 Aligned_cols=238 Identities=16% Similarity=0.190 Sum_probs=171.2
Q ss_pred HHHHHHHHHcccccCCCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhhHHH
Q psy14548 82 YAMSFDEILEFEKADSNSTDTLDKFCKALVKIRNRHSDVVQTMAQGVMELKDSHDVDHQTENSIQYFLDRFYMSRISIRM 161 (482)
Q Consensus 82 y~~sf~~l~~~~~~~~~~~~~~~~f~~~l~~~l~~~~~~i~~la~g~~e~~~~~~~~~~~~e~~~~~Ld~i~~sri~~r~ 161 (482)
..++|++|....+. ..+...+|...++|++++|++.+...++.+.+. ....++..+.+..+......+..
T Consensus 244 l~~~~n~m~~~l~~---~~~~~~~~~~~laheL~tpl~~i~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~ 313 (482)
T PRK09835 244 LVLSFNHMIERIED---VFTRQSNFSADIAHEIRTPITNLITQTEIALSQ-------SRSQKELEDVLYSNLEELTRMAK 313 (482)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHHHHHHHH
Confidence 45555555543221 234457899999999999999876655433221 11334555666665544444455
Q ss_pred HHHHHHHhhccccccCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEeeccCCCCCeEEEechhHH
Q psy14548 162 LINQHTLLFGDELTRGDSSLRHIGCIDPQCDLIGVVKDAYENARFLCEQYYLSSPELKVTEHNEYEKGEPVRIIYVPSHL 241 (482)
Q Consensus 162 Li~~~l~L~~~~~~~~~~~~~~ig~i~~~~~l~~li~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~L 241 (482)
++++++.+.+....... .....+++.++++++++.++.... ..++.+.+. ..+..+.+|+..|
T Consensus 314 ~i~~ll~~~~~~~~~~~-------~~~~~~~l~~~i~~~~~~~~~~~~-----~~~~~~~~~-----~~~~~v~~d~~~l 376 (482)
T PRK09835 314 MVSDMLFLAQADNNQLI-------PEKKMLDLADEVGKVFDFFEAWAE-----ERGVELRFV-----GDPCQVAGDPLML 376 (482)
T ss_pred HHHHHHHHHHhcCCCCC-------CCceeecHHHHHHHHHHHHHHHHh-----hCCEEEEEe-----CCCcEEEECHHHH
Confidence 67888777753221111 112356999999998888776433 234444432 2245688999999
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCCCCCEEEEEEecCceeEEEEEEcCCCCChhhHhhhhhcccccCCCCCCCCCCCCCCC
Q psy14548 242 YHMLFELFKNSMRATVEHHTDTDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVTDMLFHYMYSTAPQPSKSDAHTVPLA 321 (482)
Q Consensus 242 ~~il~NLl~NAik~t~~~~~~~~~~p~I~v~~~~~~~~~~i~V~D~G~GI~~~~~~~if~~f~~t~~~~~~~~~~~~~~~ 321 (482)
.+++.||++||++|+.+++. |.|.+...++.+.|.|.|+|.|||++.++++|++||+... +......
T Consensus 377 ~~vl~nll~Na~~~~~~~~~-------I~i~~~~~~~~~~i~v~d~G~gi~~~~~~~if~~f~~~~~------~~~~~~~ 443 (482)
T PRK09835 377 RRAISNLLSNALRYTPAGEA-------ITVRCQEVDHQVQLVVENPGTPIAPEHLPRLFDRFYRVDP------SRQRKGE 443 (482)
T ss_pred HHHHHHHHHHHHhcCCCCCe-------EEEEEEEeCCEEEEEEEECCCCcCHHHHHHHhCCcccCCC------CCCCCCC
Confidence 99999999999999876543 8898888888899999999999999999999999998532 2334447
Q ss_pred CcccCHHHHHHHHHHhCCEEEEEeecCCcEEEEEEeeCC
Q psy14548 322 GYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLKAL 360 (482)
Q Consensus 322 G~GLGL~i~r~~~~~~gG~i~v~s~~g~Gt~f~i~lp~~ 360 (482)
|+||||+||+.+++.|||++.+.|. +.|++|++.||..
T Consensus 444 g~GlGL~i~~~i~~~~~g~i~~~s~-~~g~~~~i~lP~~ 481 (482)
T PRK09835 444 GSGIGLAIVKSIVVAHKGTVAVTSD-ARGTRFVISLPRL 481 (482)
T ss_pred CcchHHHHHHHHHHHCCCEEEEEEC-CCcEEEEEEeeCC
Confidence 9999999999999999999999986 5799999999964
No 27
>PRK10337 sensor protein QseC; Provisional
Probab=99.91 E-value=8.8e-23 Score=214.51 Aligned_cols=231 Identities=13% Similarity=0.100 Sum_probs=167.3
Q ss_pred HHHHHHHHHcccccCCCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhhHHH
Q psy14548 82 YAMSFDEILEFEKADSNSTDTLDKFCKALVKIRNRHSDVVQTMAQGVMELKDSHDVDHQTENSIQYFLDRFYMSRISIRM 161 (482)
Q Consensus 82 y~~sf~~l~~~~~~~~~~~~~~~~f~~~l~~~l~~~~~~i~~la~g~~e~~~~~~~~~~~~e~~~~~Ld~i~~sri~~r~ 161 (482)
..++|+.+....+. ..+..++|...++|++++|++.+...++.+.. . ..+.+....+++.+......+..
T Consensus 219 l~~~~n~~~~~l~~---~~~~~~~~~~~~ahelrtpl~~i~~~~~~~~~----~---~~~~~~~~~~l~~~~~~~~~~~~ 288 (449)
T PRK10337 219 LVEALNQLFARTHA---MMVRERRFTSDAAHELRSPLAALKVQTEVAQL----S---DDDPQARKKALLQLHAGIDRATR 288 (449)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc----c---CCCHHHHHHHHHHHHHHHHHHHH
Confidence 44555554432221 23345689999999999999988665543211 1 12345566788888877677777
Q ss_pred HHHHHHHhhccccccCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEeeccCCCCCeEEEechhHH
Q psy14548 162 LINQHTLLFGDELTRGDSSLRHIGCIDPQCDLIGVVKDAYENARFLCEQYYLSSPELKVTEHNEYEKGEPVRIIYVPSHL 241 (482)
Q Consensus 162 Li~~~l~L~~~~~~~~~~~~~~ig~i~~~~~l~~li~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~L 241 (482)
++++++.+.+.... ........+++.+++++++......+.. ..+.+.+.. ++.+..+.+|+..+
T Consensus 289 l~~~ll~~~r~~~~-------~~~~~~~~~~l~~~~~~~~~~~~~~~~~-----~~i~~~~~~---~~~~~~~~~~~~~l 353 (449)
T PRK10337 289 LVDQLLTLSRLDSL-------DNLQDVAEIPLEDLLQSAVMDIYHTAQQ-----AGIDVRLTL---NAHPVIRTGQPLLL 353 (449)
T ss_pred HHHHHHHHHhcCCC-------CCCCCCcccCHHHHHHHHHHHHHHHHHH-----cCCEEEEec---CCCCceeecCHHHH
Confidence 89999988863211 0111224569999999988877765432 344444433 23345678999999
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCCCCCEEEEEEecCceeEEEEEEcCCCCChhhHhhhhhcccccCCCCCCCCCCCCCCC
Q psy14548 242 YHMLFELFKNSMRATVEHHTDTDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVTDMLFHYMYSTAPQPSKSDAHTVPLA 321 (482)
Q Consensus 242 ~~il~NLl~NAik~t~~~~~~~~~~p~I~v~~~~~~~~~~i~V~D~G~GI~~~~~~~if~~f~~t~~~~~~~~~~~~~~~ 321 (482)
.+++.||++||+||+.+++. |.|.+... .|.|+|+|+|||+++++++|++||+... ...+
T Consensus 354 ~~vl~Nli~NA~k~~~~~~~-------i~i~~~~~----~i~i~D~G~Gi~~~~~~~if~~f~~~~~---------~~~~ 413 (449)
T PRK10337 354 SLLVRNLLDNAIRYSPQGSV-------VDVTLNAR----NFTVRDNGPGVTPEALARIGERFYRPPG---------QEAT 413 (449)
T ss_pred HHHHHHHHHHHHhhCCCCCe-------EEEEEEee----EEEEEECCCCCCHHHHHHhcccccCCCC---------CCCC
Confidence 99999999999999976543 77776532 6999999999999999999999998431 2236
Q ss_pred CcccCHHHHHHHHHHhCCEEEEEeecCCcEEEEEEe
Q psy14548 322 GYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYL 357 (482)
Q Consensus 322 G~GLGL~i~r~~~~~~gG~i~v~s~~g~Gt~f~i~l 357 (482)
|+||||+||+.+++.|||+|.+.|.+++|++|++.|
T Consensus 414 g~GlGL~iv~~i~~~~gg~l~~~s~~~~G~~~~i~~ 449 (449)
T PRK10337 414 GSGLGLSIVRRIAKLHGMNVSFGNAPEGGFEAKVSW 449 (449)
T ss_pred ccchHHHHHHHHHHHcCCEEEEEecCCCeEEEEEeC
Confidence 899999999999999999999999999999998864
No 28
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=99.91 E-value=3.9e-23 Score=242.09 Aligned_cols=223 Identities=15% Similarity=0.171 Sum_probs=168.5
Q ss_pred hHHHHHHHHHHHHHhhchhHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhhHHHHHHHHHHhhccccccCCCCC
Q psy14548 102 TLDKFCKALVKIRNRHSDVVQTMAQGVMELKDSHDVDHQTENSIQYFLDRFYMSRISIRMLINQHTLLFGDELTRGDSSL 181 (482)
Q Consensus 102 ~~~~f~~~l~~~l~~~~~~i~~la~g~~e~~~~~~~~~~~~e~~~~~Ld~i~~sri~~r~Li~~~l~L~~~~~~~~~~~~ 181 (482)
...+|...++|++++|++.|..+++.+.+ . ..+.++..++++.+..+...+..++++++.+.+....
T Consensus 711 ~~~~~~~~isHelrtPL~~i~~~~~ll~~----~---~~~~~~~~~~l~~~~~~~~~l~~li~~ll~~~~~~~~------ 777 (1197)
T PRK09959 711 AKSQFLATMSHEIRTPISSIMGFLELLSG----S---GLSKEQRVEAISLAYATGQSLLGLIGEILDVDKIESG------ 777 (1197)
T ss_pred HHHHHHHhcChhhCccHHHHHHHHHHHhc----C---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC------
Confidence 45789999999999999999777654321 1 1245666778888876666666788888888754321
Q ss_pred CcccccCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEeeccCCCCCeEEEechhHHHHHHHHHHHHHHHHhhhcCC
Q psy14548 182 RHIGCIDPQCDLIGVVKDAYENARFLCEQYYLSSPELKVTEHNEYEKGEPVRIIYVPSHLYHMLFELFKNSMRATVEHHT 261 (482)
Q Consensus 182 ~~ig~i~~~~~l~~li~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~L~~il~NLl~NAik~t~~~~~ 261 (482)
........+++.+++++++..+...+.. ..+.+.+... .+....+.+|+..|.||+.||++||+||+..+.
T Consensus 778 -~~~~~~~~~~l~~~i~~~~~~~~~~~~~-----~~i~~~~~~~--~~~~~~v~~d~~~l~qvl~NLl~NAik~~~~g~- 848 (1197)
T PRK09959 778 -NYQLQPQWVDIPTLVQNTCHSFGAIAAS-----KSIALSCSST--FPDHYLVKIDPQAFKQVLSNLLSNALKFTTEGA- 848 (1197)
T ss_pred -CceeeeeeeCHHHHHHHHHHHHHHHHHh-----cCcEEEEecC--CCCceEEEECHHHHHHHHHHHHHHHHHhCCCCC-
Confidence 1122234569999999999988775542 3444443322 233457899999999999999999999997653
Q ss_pred CCCCCCCEEEEEE--e---cCceeEEEEEEcCCCCChhhHhhhhhcccccCCCCCCCCCCCCCCCCcccCHHHHHHHHHH
Q psy14548 262 DTDVLPPIEVSVV--R---GKEDICVKMSDKGGGIPRSVTDMLFHYMYSTAPQPSKSDAHTVPLAGYGYGLPISRLYARY 336 (482)
Q Consensus 262 ~~~~~p~I~v~~~--~---~~~~~~i~V~D~G~GI~~~~~~~if~~f~~t~~~~~~~~~~~~~~~G~GLGL~i~r~~~~~ 336 (482)
+.|.+. . +...+.|.|+|+|+|||++.+++||++||+++. ....+|+||||+|||.+++.
T Consensus 849 -------i~i~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~iF~~f~~~~~--------~~~~~G~GLGL~i~~~iv~~ 913 (1197)
T PRK09959 849 -------VKITTSLGHIDDNHAVIKMTIMDSGSGLSQEEQQQLFKRYSQTSA--------GRQQTGSGLGLMICKELIKN 913 (1197)
T ss_pred -------EEEEEEEeeecCCceEEEEEEEEcCCCCCHHHHHHhhcccccccc--------CCCCCCcCchHHHHHHHHHH
Confidence 555443 1 233578999999999999999999999998642 12346999999999999999
Q ss_pred hCCEEEEEeecCCcEEEEEEeeCCC
Q psy14548 337 FHGDIMLLSCDGLGTDAIIYLKALS 361 (482)
Q Consensus 337 ~gG~i~v~s~~g~Gt~f~i~lp~~~ 361 (482)
|||+|.+.|.+|.||+|+|+||...
T Consensus 914 ~gG~i~v~s~~~~Gt~f~i~lP~~~ 938 (1197)
T PRK09959 914 MQGDLSLESHPGIGTTFTITIPVEI 938 (1197)
T ss_pred cCCEEEEEeCCCCcEEEEEEEEccc
Confidence 9999999999999999999999753
No 29
>PRK09467 envZ osmolarity sensor protein; Provisional
Probab=99.91 E-value=1.8e-22 Score=211.19 Aligned_cols=224 Identities=16% Similarity=0.152 Sum_probs=160.7
Q ss_pred HHHHHHHHHcccccCCCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhhHHH
Q psy14548 82 YAMSFDEILEFEKADSNSTDTLDKFCKALVKIRNRHSDVVQTMAQGVMELKDSHDVDHQTENSIQYFLDRFYMSRISIRM 161 (482)
Q Consensus 82 y~~sf~~l~~~~~~~~~~~~~~~~f~~~l~~~l~~~~~~i~~la~g~~e~~~~~~~~~~~~e~~~~~Ld~i~~sri~~r~ 161 (482)
..++|++|....+. ..++...|...++|++++|++.+...++.+ .. .+ ....+.+......+..
T Consensus 211 L~~~~n~m~~~l~~---~~~~~~~~~~~lsHeLrtPL~~i~~~~e~~----~~------~~---~~~~~~i~~~~~~~~~ 274 (435)
T PRK09467 211 VTRAFNQMAAGIKQ---LEDDRTLLMAGVSHDLRTPLTRIRLATEMM----SE------ED---GYLAESINKDIEECNA 274 (435)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHhhhhccchHHHHHHHHHhc----cc------ch---HHHHHHHHHHHHHHHH
Confidence 56666666543321 234456789999999999999986544321 10 01 1122334433444555
Q ss_pred HHHHHHHhhccccccCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEeeccCCCCCeEEEechhHH
Q psy14548 162 LINQHTLLFGDELTRGDSSLRHIGCIDPQCDLIGVVKDAYENARFLCEQYYLSSPELKVTEHNEYEKGEPVRIIYVPSHL 241 (482)
Q Consensus 162 Li~~~l~L~~~~~~~~~~~~~~ig~i~~~~~l~~li~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~L 241 (482)
++++++.+.+... +.....+++.+++++++.... .....+.+.. +..+..+.+|+..|
T Consensus 275 ~i~~~l~~~r~~~----------~~~~~~~~l~~~~~~~~~~~~---------~~~~~i~~~~---~~~~~~~~~~~~~l 332 (435)
T PRK09467 275 IIEQFIDYLRTGQ----------EMPMEMADLNALLGEVIAAES---------GYEREIETAL---QPGPIEVPMNPIAI 332 (435)
T ss_pred HHHHHHHHhcccC----------CCCccccCHHHHHHHHHHHhh---------hcCCeEEEec---CCCCceEEECHHHH
Confidence 7777777765321 011235588888888766433 1233444433 22345799999999
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCCCCCEEEEEEecCceeEEEEEEcCCCCChhhHhhhhhcccccCCCCCCCCCCCCCCC
Q psy14548 242 YHMLFELFKNSMRATVEHHTDTDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVTDMLFHYMYSTAPQPSKSDAHTVPLA 321 (482)
Q Consensus 242 ~~il~NLl~NAik~t~~~~~~~~~~p~I~v~~~~~~~~~~i~V~D~G~GI~~~~~~~if~~f~~t~~~~~~~~~~~~~~~ 321 (482)
.+++.||++||+||+. + .|.|++...++.+.|+|.|+|+||+++.++++|++||+... .+...
T Consensus 333 ~~il~NLl~NA~k~~~--~-------~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~~~~~f~~~~~--------~~~~~ 395 (435)
T PRK09467 333 KRALANLVVNAARYGN--G-------WIKVSSGTEGKRAWFQVEDDGPGIPPEQLKHLFQPFTRGDS--------ARGSS 395 (435)
T ss_pred HHHHHHHHHHHHHhCC--C-------eEEEEEEecCCEEEEEEEecCCCcCHHHHHHhcCCcccCCC--------CCCCC
Confidence 9999999999999972 2 18999988888899999999999999999999999998432 12237
Q ss_pred CcccCHHHHHHHHHHhCCEEEEEeecCCcEEEEEEeeCC
Q psy14548 322 GYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLKAL 360 (482)
Q Consensus 322 G~GLGL~i~r~~~~~~gG~i~v~s~~g~Gt~f~i~lp~~ 360 (482)
|+|+||+||+.+++.|||++.+.+.+++|++|+++||..
T Consensus 396 g~GlGL~iv~~i~~~~~g~l~i~~~~~~G~~~~i~lp~~ 434 (435)
T PRK09467 396 GTGLGLAIVKRIVDQHNGKVELGNSEEGGLSARAWLPLT 434 (435)
T ss_pred CeehhHHHHHHHHHHCCCEEEEEECCCCcEEEEEEEeCC
Confidence 999999999999999999999999999999999999964
No 30
>PRK11100 sensory histidine kinase CreC; Provisional
Probab=99.91 E-value=5.4e-22 Score=209.15 Aligned_cols=236 Identities=17% Similarity=0.187 Sum_probs=182.6
Q ss_pred HHHHHHHHHcccccCCCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhhHHH
Q psy14548 82 YAMSFDEILEFEKADSNSTDTLDKFCKALVKIRNRHSDVVQTMAQGVMELKDSHDVDHQTENSIQYFLDRFYMSRISIRM 161 (482)
Q Consensus 82 y~~sf~~l~~~~~~~~~~~~~~~~f~~~l~~~l~~~~~~i~~la~g~~e~~~~~~~~~~~~e~~~~~Ld~i~~sri~~r~ 161 (482)
..++|++|....+ ..+...+|.+.++|++++|++.+...++.+.+ . .+.+...++++.+......+..
T Consensus 239 l~~~~~~m~~~l~----~~~~~~~~~~~~~h~l~~pl~~i~~~~~~l~~---~-----~~~~~~~~~~~~~~~~~~~~~~ 306 (475)
T PRK11100 239 LAQALESMRVKLE----GKAYVEQYVQTLTHELKSPLAAIRGAAELLQE---D-----PPPEDRARFTGNILTQSARLQQ 306 (475)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHhhhhhcCcHHHHHHHHHHHhc---c-----CChHHHHHHHHHHHHHHHHHHH
Confidence 5566666654322 22446788999999999999998877665433 1 2456788899998888777788
Q ss_pred HHHHHHHhhccccccCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEeeccCCCCCeEEEechhHH
Q psy14548 162 LINQHTLLFGDELTRGDSSLRHIGCIDPQCDLIGVVKDAYENARFLCEQYYLSSPELKVTEHNEYEKGEPVRIIYVPSHL 241 (482)
Q Consensus 162 Li~~~l~L~~~~~~~~~~~~~~ig~i~~~~~l~~li~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~L 241 (482)
++++++.+.+.... ........+++.++++++...+...+.. ..+.+.+.. + +..+.+|...|
T Consensus 307 ~i~~l~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~i~~~~~~----~-~~~~~~~~~~l 369 (475)
T PRK11100 307 LIDRLLELARLEQR-------QELEVLEPVALAALLEELVEAREAQAAA-----KGITLRLRP----D-DARVLGDPFLL 369 (475)
T ss_pred HHHHHHHHHhcccC-------CCCccceeccHHHHHHHHHHHHHHHHHh-----CCceEEEeC----C-CceEEECHHHH
Confidence 88988887754321 1111235669999999999888765442 344444432 2 56789999999
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCCCCCEEEEEEecCceeEEEEEEcCCCCChhhHhhhhhcccccCCCCCCCCCCCCCCC
Q psy14548 242 YHMLFELFKNSMRATVEHHTDTDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVTDMLFHYMYSTAPQPSKSDAHTVPLA 321 (482)
Q Consensus 242 ~~il~NLl~NAik~t~~~~~~~~~~p~I~v~~~~~~~~~~i~V~D~G~GI~~~~~~~if~~f~~t~~~~~~~~~~~~~~~ 321 (482)
.+++.||+.||++|+.+++. |.|++...++.+.|.|+|+|.|||++.++++|++||++.. ......
T Consensus 370 ~~vl~nli~Na~~~~~~~~~-------i~i~~~~~~~~~~i~i~D~G~Gi~~~~~~~i~~~~~~~~~-------~~~~~~ 435 (475)
T PRK11100 370 RQALGNLLDNAIDFSPEGGT-------ITLSAEVDGEQVALSVEDQGPGIPDYALPRIFERFYSLPR-------PANGRK 435 (475)
T ss_pred HHHHHHHHHHHHHhCCCCCE-------EEEEEEEcCCEEEEEEEECCCCCCHHHHHHHHHHHccCCC-------CCCCCC
Confidence 99999999999999865543 9999998889999999999999999999999999998532 122346
Q ss_pred CcccCHHHHHHHHHHhCCEEEEEeecCCcEEEEEEeeCC
Q psy14548 322 GYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLKAL 360 (482)
Q Consensus 322 G~GLGL~i~r~~~~~~gG~i~v~s~~g~Gt~f~i~lp~~ 360 (482)
|+||||++|+.+++.|||++.+.|.++.||+|.+.||..
T Consensus 436 ~~GlGL~i~~~~~~~~~G~i~i~s~~~~Gt~v~i~lp~~ 474 (475)
T PRK11100 436 STGLGLAFVREVARLHGGEVTLRNRPEGGVLATLTLPRH 474 (475)
T ss_pred CcchhHHHHHHHHHHCCCEEEEEEcCCCeEEEEEEeeCC
Confidence 899999999999999999999999999999999999963
No 31
>PRK09470 cpxA two-component sensor protein; Provisional
Probab=99.90 E-value=7.1e-22 Score=207.89 Aligned_cols=234 Identities=17% Similarity=0.206 Sum_probs=168.4
Q ss_pred HHHHHHHHHcccccCCCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhhHHH
Q psy14548 82 YAMSFDEILEFEKADSNSTDTLDKFCKALVKIRNRHSDVVQTMAQGVMELKDSHDVDHQTENSIQYFLDRFYMSRISIRM 161 (482)
Q Consensus 82 y~~sf~~l~~~~~~~~~~~~~~~~f~~~l~~~l~~~~~~i~~la~g~~e~~~~~~~~~~~~e~~~~~Ld~i~~sri~~r~ 161 (482)
..++|+.+...... ..+..++|...++|++++|++.+......+.. .. ...+. +..+......+..
T Consensus 225 l~~~~n~m~~~l~~---~~~~~~~~~~~~shel~tpl~~i~~~~~~~~~-~~------~~~~~----~~~i~~~~~~l~~ 290 (461)
T PRK09470 225 AGASFNQMVTALER---MMTSQQRLLSDISHELRTPLTRLQLATALLRR-RQ------GESKE----LERIETEAQRLDS 290 (461)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHhhhHhhCCHHHHHHHHHHHHhh-cc------CChHH----HHHHHHHHHHHHH
Confidence 45555555432221 23445689999999999999998755542221 10 01122 3334434445556
Q ss_pred HHHHHHHhhccccccCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEeeccCCCCCeEEEechhHH
Q psy14548 162 LINQHTLLFGDELTRGDSSLRHIGCIDPQCDLIGVVKDAYENARFLCEQYYLSSPELKVTEHNEYEKGEPVRIIYVPSHL 241 (482)
Q Consensus 162 Li~~~l~L~~~~~~~~~~~~~~ig~i~~~~~l~~li~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~L 241 (482)
++++++.+.+..... ....+.+++.++++++++.+..... ...+.+.+.. ...+..+.+|+..|
T Consensus 291 ~i~~l~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~~~~~-----~~~~~~~i~~---~~~~~~~~~~~~~l 354 (461)
T PRK09470 291 MINDLLVLSRNQQKN--------HLERETFKANSLWSEVLEDAKFEAE-----QMGKSLTVSA---PPGPWPINGNPNAL 354 (461)
T ss_pred HHHHHHHHHHhhccc--------ccccceecHHHHHHHHHHHHHHHHH-----HCCCeEEEec---CCcceEEEECHHHH
Confidence 788888877532110 1122356899999998887765433 2344555432 23456899999999
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCCCCCEEEEEEecCceeEEEEEEcCCCCChhhHhhhhhcccccCCCCCCCCCCCCCCC
Q psy14548 242 YHMLFELFKNSMRATVEHHTDTDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVTDMLFHYMYSTAPQPSKSDAHTVPLA 321 (482)
Q Consensus 242 ~~il~NLl~NAik~t~~~~~~~~~~p~I~v~~~~~~~~~~i~V~D~G~GI~~~~~~~if~~f~~t~~~~~~~~~~~~~~~ 321 (482)
.+++.||++||++|+.. . |.|.+...++.+.|+|+|+|+||+++.++++|++||++... ..+..+
T Consensus 355 ~~~l~nli~NA~~~~~~-~--------i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~~~~~~~~------~~~~~~ 419 (461)
T PRK09470 355 ASALENIVRNALRYSHT-K--------IEVAFSVDKDGLTITVDDDGPGVPEEEREQIFRPFYRVDEA------RDRESG 419 (461)
T ss_pred HHHHHHHHHHHHHhCCC-c--------EEEEEEEECCEEEEEEEECCCCCCHHHHHHhcCCCccCCcc------cCCCCC
Confidence 99999999999999842 2 88888888889999999999999999999999999985421 334457
Q ss_pred CcccCHHHHHHHHHHhCCEEEEEeecCCcEEEEEEeeCC
Q psy14548 322 GYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLKAL 360 (482)
Q Consensus 322 G~GLGL~i~r~~~~~~gG~i~v~s~~g~Gt~f~i~lp~~ 360 (482)
|+||||+||+.+++.|||++.+.|.++.||+|++++|..
T Consensus 420 g~GlGL~iv~~~v~~~~G~l~~~s~~~~Gt~~~i~lp~~ 458 (461)
T PRK09470 420 GTGLGLAIVENAIQQHRGWVKAEDSPLGGLRLTIWLPLY 458 (461)
T ss_pred CcchhHHHHHHHHHHCCCEEEEEECCCCeEEEEEEeeCC
Confidence 999999999999999999999999999999999999975
No 32
>COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms]
Probab=99.90 E-value=2.9e-22 Score=190.54 Aligned_cols=216 Identities=16% Similarity=0.168 Sum_probs=159.5
Q ss_pred hHHHHHHHHHHHHHhhchhHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhhHHHHHHHHHHhhccccccCCCCC
Q psy14548 102 TLDKFCKALVKIRNRHSDVVQTMAQGVMELKDSHDVDHQTENSIQYFLDRFYMSRISIRMLINQHTLLFGDELTRGDSSL 181 (482)
Q Consensus 102 ~~~~f~~~l~~~l~~~~~~i~~la~g~~e~~~~~~~~~~~~e~~~~~Ld~i~~sri~~r~Li~~~l~L~~~~~~~~~~~~ 181 (482)
......+.++|++++|+.-|...|+.+.... .++...++-+-|.....++|-|++.+..+.. ..+
T Consensus 131 a~~~L~r~LAHEIKNPL~GiRGAAQLLe~~l--------pd~~~~~lt~lIieE~DRl~~LVDRme~~~~-------~rp 195 (363)
T COG3852 131 AVKGLVRGLAHEIKNPLGGIRGAAQLLERAL--------PDEALRELTQLIIEEADRLRNLVDRLEVLGP-------QRP 195 (363)
T ss_pred HHHHHHHHHHHHhcCcccchhhHHHHHHhhC--------CChHHHHHHHHHHHHHHHHHHHHHHHHhcCC-------CCC
Confidence 4567889999999999999988887544322 3345777778888777778888887655442 111
Q ss_pred CcccccCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEeeccCCCCCeEEEechhHHHHHHHHHHHHHHHHhhhcCC
Q psy14548 182 RHIGCIDPQCDLIGVVKDAYENARFLCEQYYLSSPELKVTEHNEYEKGEPVRIIYVPSHLYHMLFELFKNSMRATVEHHT 261 (482)
Q Consensus 182 ~~ig~i~~~~~l~~li~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~L~~il~NLl~NAik~t~~~~~ 261 (482)
.. ...+|+.++++.+...++. .-...+.+.-+.++..| .+.+|+++|.|++.||++||+.+......
T Consensus 196 ~~----r~~~NIH~VLerV~~lv~~--------e~~~~i~l~rdYDPSLP-~v~~d~DqliQv~LNlVrNAaqA~~~~~~ 262 (363)
T COG3852 196 GD----RVPVNIHEVLERVRALVEA--------EFADNVRLIRDYDPSLP-EVLGDRDQLIQVFLNLVRNAAQALGGRAD 262 (363)
T ss_pred cc----cccchHHHHHHHHHHHHhc--------ccCCceEEeecCCCCCc-cccCCHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 11 1244888888887777664 22334555555666654 48999999999999999999999753211
Q ss_pred CCCCCCCEEEEEE--------ecC--ceeEEEEEEcCCCCChhhHhhhhhcccccCCCCCCCCCCCCCCCCcccCHHHHH
Q psy14548 262 DTDVLPPIEVSVV--------RGK--EDICVKMSDKGGGIPRSVTDMLFHYMYSTAPQPSKSDAHTVPLAGYGYGLPISR 331 (482)
Q Consensus 262 ~~~~~p~I~v~~~--------~~~--~~~~i~V~D~G~GI~~~~~~~if~~f~~t~~~~~~~~~~~~~~~G~GLGL~i~r 331 (482)
..+.|.++.+ ... -.+.|.|.|||+|||++-++++|.||.++++ +|+||||+|++
T Consensus 263 ---~~g~I~LrTR~~~q~~i~g~r~rl~l~leViDNGPGVP~~L~~~lF~P~Vs~r~------------~GsGLGLala~ 327 (363)
T COG3852 263 ---EGGEIILRTRTGIQLTIAGTRYRLALPLEVIDNGPGVPPDLQDHLFYPMVSGRE------------GGTGLGLALAQ 327 (363)
T ss_pred ---CCceEEEEeccceEEEccCceeEeeeeeEEecCCCCCChHHhhhccccccccCC------------CCccccHHHHH
Confidence 1122444332 222 2356889999999999999999999999765 69999999999
Q ss_pred HHHHHhCCEEEEEeecCCcEEEEEEeeCCC
Q psy14548 332 LYARYFHGDIMLLSCDGLGTDAIIYLKALS 361 (482)
Q Consensus 332 ~~~~~~gG~i~v~s~~g~Gt~f~i~lp~~~ 361 (482)
+++..|||.|+++|.+| .|+|++.+|...
T Consensus 328 ~li~qH~G~Ie~~S~Pg-~T~FrvllP~~~ 356 (363)
T COG3852 328 NLIDQHGGKIEFDSWPG-RTVFRVLLPIRK 356 (363)
T ss_pred HHHHhcCCEEEEeccCC-ceEEEEEeeccc
Confidence 99999999999999876 599999999764
No 33
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR. Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154).
Probab=99.90 E-value=5.7e-22 Score=198.48 Aligned_cols=220 Identities=16% Similarity=0.141 Sum_probs=169.6
Q ss_pred HHHHHHHHHHHHHhhchhHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhhHHHHHHHHHHhhccccccCCCCCC
Q psy14548 103 LDKFCKALVKIRNRHSDVVQTMAQGVMELKDSHDVDHQTENSIQYFLDRFYMSRISIRMLINQHTLLFGDELTRGDSSLR 182 (482)
Q Consensus 103 ~~~f~~~l~~~l~~~~~~i~~la~g~~e~~~~~~~~~~~~e~~~~~Ld~i~~sri~~r~Li~~~l~L~~~~~~~~~~~~~ 182 (482)
.++|...++|.+++|++.+..+++.+.... ....+...++++.+......+..++++++.+.+... .
T Consensus 114 ~~~~~~~l~h~l~~pL~~i~~~~~~l~~~~------~~~~~~~~~~~~~i~~~~~~l~~~i~~l~~~~~~~~-------~ 180 (333)
T TIGR02966 114 RRDFVANVSHELRTPLTVLRGYLETLADGP------DEDPEEWNRALEIMLEQSQRMQSLVEDLLTLSRLES-------A 180 (333)
T ss_pred HHHHHHhhhhhhcccHHHHHHHHHHHHhcc------cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------C
Confidence 356899999999999999877665433211 124567778888888776677778888877764321 1
Q ss_pred cccccCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEeeccCCCCCeEEEechhHHHHHHHHHHHHHHHHhhhcCCC
Q psy14548 183 HIGCIDPQCDLIGVVKDAYENARFLCEQYYLSSPELKVTEHNEYEKGEPVRIIYVPSHLYHMLFELFKNSMRATVEHHTD 262 (482)
Q Consensus 183 ~ig~i~~~~~l~~li~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~L~~il~NLl~NAik~t~~~~~~ 262 (482)
........+++.+++..+...+...+.. ..+.+.+.. ..+..+.+|+..|.+++.||+.||++|+..++.
T Consensus 181 ~~~~~~~~~~l~~~i~~~~~~~~~~~~~-----~~i~i~~~~----~~~~~~~~d~~~l~~vl~nll~Nai~~~~~~~~- 250 (333)
T TIGR02966 181 ASPLEDEPVDMPALLDHLRDEAEALSQG-----KNHQITFEI----DGGVDVLGDEDELRSAFSNLVSNAIKYTPEGGT- 250 (333)
T ss_pred CccccccccCHHHHHHHHHHHHHHHHHH-----cCcEEEEcC----CCCceEEECHHHHHHHHHHHHHHhheeCCCCCe-
Confidence 1222334679999999999888876542 234444432 235678999999999999999999999865543
Q ss_pred CCCCCCEEEEEEecCceeEEEEEEcCCCCChhhHhhhhhcccccCCCCCCCCCCCCCCCCcccCHHHHHHHHHHhCCEEE
Q psy14548 263 TDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVTDMLFHYMYSTAPQPSKSDAHTVPLAGYGYGLPISRLYARYFHGDIM 342 (482)
Q Consensus 263 ~~~~p~I~v~~~~~~~~~~i~V~D~G~GI~~~~~~~if~~f~~t~~~~~~~~~~~~~~~G~GLGL~i~r~~~~~~gG~i~ 342 (482)
|.|.+...++.+.|.|.|+|+|||++.++++|++||++... ......|.|+||++|+.+++.|||++.
T Consensus 251 ------i~i~~~~~~~~~~i~i~d~G~gi~~~~~~~if~~~~~~~~~------~~~~~~g~glGL~~~~~~~~~~gG~i~ 318 (333)
T TIGR02966 251 ------ITVRWRRDGGGAEFSVTDTGIGIAPEHLPRLTERFYRVDKS------RSRDTGGTGLGLAIVKHVLSRHHARLE 318 (333)
T ss_pred ------EEEEEEEcCCEEEEEEEecCCCCCHHHHhhhccCceecCcc------cccCCCCCcccHHHHHHHHHHCCCEEE
Confidence 88988888888999999999999999999999999975421 223347899999999999999999999
Q ss_pred EEeecCCcEEEEEEe
Q psy14548 343 LLSCDGLGTDAIIYL 357 (482)
Q Consensus 343 v~s~~g~Gt~f~i~l 357 (482)
+.|.++.||+|+++|
T Consensus 319 ~~s~~~~Gt~~~i~l 333 (333)
T TIGR02966 319 IESELGKGSTFSFIF 333 (333)
T ss_pred EEecCCCCeEEEEEC
Confidence 999999999999875
No 34
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase. Members of this protein family have a novel N-terminal domain, a single predicted membrane-spanning helix, and a predicted cystosolic histidine kinase domain. We designate this protein PrsK, and its companion DNA-binding response regulator protein (TIGR02915) PrsR. These predicted signal-transducing proteins appear to enable enhancer-dependent transcriptional activation. The prsK gene is often associated with exopolysaccharide biosynthesis genes.
Probab=99.90 E-value=5.6e-22 Score=219.17 Aligned_cols=205 Identities=19% Similarity=0.207 Sum_probs=154.4
Q ss_pred hHHHHHHHHHHHHHhhchhHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhhHHHHHHHHHHhhccccccCCCCC
Q psy14548 102 TLDKFCKALVKIRNRHSDVVQTMAQGVMELKDSHDVDHQTENSIQYFLDRFYMSRISIRMLINQHTLLFGDELTRGDSSL 181 (482)
Q Consensus 102 ~~~~f~~~l~~~l~~~~~~i~~la~g~~e~~~~~~~~~~~~e~~~~~Ld~i~~sri~~r~Li~~~l~L~~~~~~~~~~~~ 181 (482)
...++...++|++++|.+.+..+.+...+ . ..+++..++.++.+..+...++.+++++.....
T Consensus 474 ~~~~~~a~i~HdLrn~l~~l~~~l~~~~~----~---~~~~~~~~~~l~~i~~~~~rl~~ll~~l~~~~~---------- 536 (679)
T TIGR02916 474 AFNRMSAFVVHDLKNLVAQLSLLLRNAER----H---KDNPEFQDDMLETVENAVNRMKKLLAQLRSKGL---------- 536 (679)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHh----c---ccCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----------
Confidence 34567778899999988877655443322 1 123455666777776555555555554321110
Q ss_pred CcccccCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEeeccCCCCCeEEEechhHHHHHHHHHHHHHHHHhhhcCC
Q psy14548 182 RHIGCIDPQCDLIGVVKDAYENARFLCEQYYLSSPELKVTEHNEYEKGEPVRIIYVPSHLYHMLFELFKNSMRATVEHHT 261 (482)
Q Consensus 182 ~~ig~i~~~~~l~~li~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~L~~il~NLl~NAik~t~~~~~ 261 (482)
......+++.++++++.+..+. ..+.+.+.+ +.+..+.+|+..+.+|+.||++||+||+++++.
T Consensus 537 ---~~~~~~~~l~~ll~~~~~~~~~-------~~~~~~l~~------~~~~~v~~d~~~l~~vl~nLl~NAik~~~~~~~ 600 (679)
T TIGR02916 537 ---EEEKLCVDLVDLLRRAIASKRA-------QGPRPEVSI------DTDLSVRADRERLERVLGHLVQNALEATPGEGR 600 (679)
T ss_pred ---ccCCccccHHHHHHHHHHHhhh-------hcCCceEEe------CCCceEEECHHHHHHHHHHHHHHHHHhCCCCCc
Confidence 1112345899999888776543 234444443 223678999999999999999999999976543
Q ss_pred CCCCCCCEEEEEEecCceeEEEEEEcCCCCChhh-HhhhhhcccccCCCCCCCCCCCCCCCCcccCHHHHHHHHHHhCCE
Q psy14548 262 DTDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSV-TDMLFHYMYSTAPQPSKSDAHTVPLAGYGYGLPISRLYARYFHGD 340 (482)
Q Consensus 262 ~~~~~p~I~v~~~~~~~~~~i~V~D~G~GI~~~~-~~~if~~f~~t~~~~~~~~~~~~~~~G~GLGL~i~r~~~~~~gG~ 340 (482)
|.|.+...++.+.|+|+|+|+|||++. .+++|++|++++. .|+|+||++||.+++.|||+
T Consensus 601 -------I~I~~~~~~~~~~i~V~D~G~Gi~~~~i~~~lF~pf~~~~~------------~G~GLGL~i~~~iv~~~gG~ 661 (679)
T TIGR02916 601 -------VAIRVERECGAARIEIEDSGCGMSPAFIRERLFKPFDTTKG------------AGMGIGVYECRQYVEEIGGR 661 (679)
T ss_pred -------EEEEEEEcCCEEEEEEEEcCCCcChHHHHHhcCCCCCCCCC------------CCcchhHHHHHHHHHHcCCE
Confidence 999998888899999999999999999 9999999998642 69999999999999999999
Q ss_pred EEEEeecCCcEEEEEEee
Q psy14548 341 IMLLSCDGLGTDAIIYLK 358 (482)
Q Consensus 341 i~v~s~~g~Gt~f~i~lp 358 (482)
|.++|.+|+||+|+++||
T Consensus 662 i~v~s~~g~Gt~f~i~LP 679 (679)
T TIGR02916 662 IEVESTPGQGTIFTLVLP 679 (679)
T ss_pred EEEEecCCCceEEEEEeC
Confidence 999999999999999997
No 35
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]
Probab=99.90 E-value=6.8e-22 Score=202.72 Aligned_cols=222 Identities=16% Similarity=0.170 Sum_probs=174.5
Q ss_pred hHHHHHHHHHHHHHhhchhHHHHHHHHHHHhhhcCCCCC-ChHHHHHHHHHHHHhhhhHHHHHHHHHHhhccccccCCCC
Q psy14548 102 TLDKFCKALVKIRNRHSDVVQTMAQGVMELKDSHDVDHQ-TENSIQYFLDRFYMSRISIRMLINQHTLLFGDELTRGDSS 180 (482)
Q Consensus 102 ~~~~f~~~l~~~l~~~~~~i~~la~g~~e~~~~~~~~~~-~~e~~~~~Ld~i~~sri~~r~Li~~~l~L~~~~~~~~~~~ 180 (482)
.+.+-..-++|++++|+++|+..++-+.. +++.... +.+..+++.|.|.+....+..++++.-+..+.- +.+
T Consensus 485 AW~dVArRIAHEIKNPLTPIQLSAERl~r---k~gk~i~eDrevfd~~tdTIirQV~dI~rMVdeF~afARmP----~p~ 557 (712)
T COG5000 485 AWGDVARRIAHEIKNPLTPIQLSAERLLR---KLGKEIDEDREVFDRCTDTIIRQVEDIKRMVDEFRAFARMP----APK 557 (712)
T ss_pred HHHHHHHHHHHHhcCCCchhhhhHHHHHH---HhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----CCC
Confidence 44566788999999999999988876543 3322111 467889999999999888888999988877642 122
Q ss_pred CCcccccCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEeeccCCCCCeEEEechhHHHHHHHHHHHHHHHHhhhcC
Q psy14548 181 LRHIGCIDPQCDLIGVVKDAYENARFLCEQYYLSSPELKVTEHNEYEKGEPVRIIYVPSHLYHMLFELFKNSMRATVEHH 260 (482)
Q Consensus 181 ~~~ig~i~~~~~l~~li~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~L~~il~NLl~NAik~t~~~~ 260 (482)
. ++.||.++++++....+. ....+.+.... +++|....+|+..|.|++.||++||.++.....
T Consensus 558 ~-------e~~dL~~ll~e~~~L~e~-------~~~~i~f~~e~---g~epl~~~~D~~~l~Qvf~NliKNA~EAi~~~~ 620 (712)
T COG5000 558 L-------EKSDLRALLKEVSFLYEI-------GNDHIVFAAEF---GGEPLIGMADATLLGQVFGNLLKNAAEAIEAVE 620 (712)
T ss_pred C-------CcchHHHHHHHHHHHHhc-------cCCCeEEEeec---CCCceeeecCHHHHHHHHHHHHHhHHHHhhhcc
Confidence 2 355999999998886654 22334444333 345889999999999999999999999986542
Q ss_pred CCCCCCCCEEEEEEecCceeEEEEEEcCCCCChhhHhhhhhcccccCCCCCCCCCCCCCCCCcccCHHHHHHHHHHhCCE
Q psy14548 261 TDTDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVTDMLFHYMYSTAPQPSKSDAHTVPLAGYGYGLPISRLYARYFHGD 340 (482)
Q Consensus 261 ~~~~~~p~I~v~~~~~~~~~~i~V~D~G~GI~~~~~~~if~~f~~t~~~~~~~~~~~~~~~G~GLGL~i~r~~~~~~gG~ 340 (482)
........|+++....++.+++.|.|||.|+|.+.+.++||||.||++ .|+||||+|||+|+|-|||.
T Consensus 621 ~~e~~~~~i~~~~~~~~g~i~v~V~DNGkG~p~e~r~r~~EPYvTtr~------------KGTGLGLAiVKkIvEeHGG~ 688 (712)
T COG5000 621 AEERRTALIRVSLDDADGRIVVDVIDNGKGFPRENRHRALEPYVTTRE------------KGTGLGLAIVKKIVEEHGGR 688 (712)
T ss_pred cccCCcceEEEEEecCCCeEEEEEecCCCCCChHHhhhhccCceeccc------------ccccccHHHHHHHHHhcCCe
Confidence 222222347888888889999999999999999999999999999875 69999999999999999999
Q ss_pred EEEEeec-CCcEEEEEEeeC
Q psy14548 341 IMLLSCD-GLGTDAIIYLKA 359 (482)
Q Consensus 341 i~v~s~~-g~Gt~f~i~lp~ 359 (482)
|.+...+ -.|.++.+.||.
T Consensus 689 leL~da~d~~GA~i~i~fp~ 708 (712)
T COG5000 689 LELHNAPDFDGAMIRIKFPL 708 (712)
T ss_pred EEecCCCCCCCcEEEEEccc
Confidence 9999884 469999999996
No 36
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional
Probab=99.89 E-value=1.6e-21 Score=198.06 Aligned_cols=209 Identities=17% Similarity=0.228 Sum_probs=152.1
Q ss_pred hHHHHHHHHHHHHHhhchhHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhhHHHHHHHHHHhhccccccCCCCC
Q psy14548 102 TLDKFCKALVKIRNRHSDVVQTMAQGVMELKDSHDVDHQTENSIQYFLDRFYMSRISIRMLINQHTLLFGDELTRGDSSL 181 (482)
Q Consensus 102 ~~~~f~~~l~~~l~~~~~~i~~la~g~~e~~~~~~~~~~~~e~~~~~Ld~i~~sri~~r~Li~~~l~L~~~~~~~~~~~~ 181 (482)
...+|...++|++++|++.+...++.+.+ . ..++...++++.+..+...+..++++++..... ..
T Consensus 129 ~~~~~~~~iaHelr~pL~~i~~~~~~l~~---~-----~~~~~~~~~~~~i~~~~~~l~~lv~~l~~~~~~------~~- 193 (348)
T PRK11073 129 AARDLVRGLAHEIKNPLGGLRGAAQLLSK---A-----LPDPALTEYTKVIIEQADRLRNLVDRLLGPQRP------GT- 193 (348)
T ss_pred HHHHHHHhhhHhhcChHHHHHHHHHHhhh---c-----CCChHHHHHHHHHHHHHHHHHHHHHHHhcccCC------CC-
Confidence 34689999999999999998776654332 1 134567788888886666666677776644321 11
Q ss_pred CcccccCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEeeccCCCCCeEEEechhHHHHHHHHHHHHHHHHhhhcCC
Q psy14548 182 RHIGCIDPQCDLIGVVKDAYENARFLCEQYYLSSPELKVTEHNEYEKGEPVRIIYVPSHLYHMLFELFKNSMRATVEHHT 261 (482)
Q Consensus 182 ~~ig~i~~~~~l~~li~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~L~~il~NLl~NAik~t~~~~~ 261 (482)
...+++..+++.+...+...+ ...+.+.. ..++. ...+.+|+..|.+|+.||++||++|+...+
T Consensus 194 ------~~~~~l~~~~~~~~~~~~~~~------~~~i~i~~--~~~~~-~~~i~~d~~~l~~vl~nLl~NA~~~~~~~~- 257 (348)
T PRK11073 194 ------HVTESIHKVAERVVQLVSLEL------PDNVRLIR--DYDPS-LPELAHDPDQIEQVLLNIVRNALQALGPEG- 257 (348)
T ss_pred ------CccccHHHHHHHHHHHHhhhc------cCCcEEEE--ecCCC-CCceeeCHHHHHHHHHHHHHHHHHHhccCC-
Confidence 123488888888777665421 12333433 22222 235889999999999999999999984222
Q ss_pred CCCCCCCEEEEEEecC----------ceeEEEEEEcCCCCChhhHhhhhhcccccCCCCCCCCCCCCCCCCcccCHHHHH
Q psy14548 262 DTDVLPPIEVSVVRGK----------EDICVKMSDKGGGIPRSVTDMLFHYMYSTAPQPSKSDAHTVPLAGYGYGLPISR 331 (482)
Q Consensus 262 ~~~~~p~I~v~~~~~~----------~~~~i~V~D~G~GI~~~~~~~if~~f~~t~~~~~~~~~~~~~~~G~GLGL~i~r 331 (482)
+.|.|.+.... ..+.|.|.|+|+|||++..+++|++||+++. .|+||||+||+
T Consensus 258 -----~~i~i~~~~~~~~~~~~~~~~~~~~i~v~D~G~Gi~~~~~~~iF~~~~~~~~------------~g~GlGL~i~~ 320 (348)
T PRK11073 258 -----GTITLRTRTAFQLTLHGERYRLAARIDIEDNGPGIPPHLQDTLFYPMVSGRE------------GGTGLGLSIAR 320 (348)
T ss_pred -----CeEEEEEccccccccCCccCCceEEEEEEeCCCCCCHHHHhhccCCcccCCC------------CCccCCHHHHH
Confidence 12666654221 1367999999999999999999999998542 59999999999
Q ss_pred HHHHHhCCEEEEEeecCCcEEEEEEeeC
Q psy14548 332 LYARYFHGDIMLLSCDGLGTDAIIYLKA 359 (482)
Q Consensus 332 ~~~~~~gG~i~v~s~~g~Gt~f~i~lp~ 359 (482)
.+++.|||+|++.|.+| ||+|+++||.
T Consensus 321 ~iv~~~gG~i~~~s~~~-~~~f~i~lP~ 347 (348)
T PRK11073 321 NLIDQHSGKIEFTSWPG-HTEFSVYLPI 347 (348)
T ss_pred HHHHHcCCeEEEEecCC-ceEEEEEEec
Confidence 99999999999999877 5999999995
No 37
>PRK13557 histidine kinase; Provisional
Probab=99.88 E-value=7.7e-21 Score=203.63 Aligned_cols=220 Identities=15% Similarity=0.153 Sum_probs=163.6
Q ss_pred hHHHHHHHHHHHHHhhchhHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhhHHHHHHHHHHhhccccccCCCCC
Q psy14548 102 TLDKFCKALVKIRNRHSDVVQTMAQGVMELKDSHDVDHQTENSIQYFLDRFYMSRISIRMLINQHTLLFGDELTRGDSSL 181 (482)
Q Consensus 102 ~~~~f~~~l~~~l~~~~~~i~~la~g~~e~~~~~~~~~~~~e~~~~~Ld~i~~sri~~r~Li~~~l~L~~~~~~~~~~~~ 181 (482)
....+...++|.+++|+..+..++..+.+.... .....+.+.+.++.+......+..++++++.+.+...
T Consensus 162 ~l~~~~~~i~h~l~~pl~~i~~~~~~l~~~~~~---~~~~~~~~~~~l~~i~~~~~~~~~li~~l~~~~~~~~------- 231 (540)
T PRK13557 162 ALGQLTGGIAHDFNNLLQVMSGYLDVIQAALSH---PDADRGRMARSVENIRAAAERAATLTQQLLAFARKQR------- 231 (540)
T ss_pred HhhhhhhhhhHHhhhHHHHHHhHHHHHHHhhcc---CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCC-------
Confidence 345688899999999999887776654433221 1123466778888887766677778888877764211
Q ss_pred CcccccCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEeeccCCCCCeEEEechhHHHHHHHHHHHHHHHHhhhcCC
Q psy14548 182 RHIGCIDPQCDLIGVVKDAYENARFLCEQYYLSSPELKVTEHNEYEKGEPVRIIYVPSHLYHMLFELFKNSMRATVEHHT 261 (482)
Q Consensus 182 ~~ig~i~~~~~l~~li~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~L~~il~NLl~NAik~t~~~~~ 261 (482)
.....+++..+++.+.+.+... ....+.+.+.. .+. ...+.+|+..+.+++.||+.||++|+..++.
T Consensus 232 ----~~~~~~~l~~~i~~~~~~~~~~------~~~~~~i~~~~--~~~-~~~~~~d~~~l~~vl~nll~NA~~~~~~~~~ 298 (540)
T PRK13557 232 ----LEGRVLNLNGLVSGMGELAERT------LGDAVTIETDL--APD-LWNCRIDPTQAEVALLNVLINARDAMPEGGR 298 (540)
T ss_pred ----CCCcccCHHHHHHHHHHHHHHh------cCCCeEEEEec--CCC-CCceeeCHHHHHHHHHHHHHHHHHhcccCCe
Confidence 1223458888888776665432 12334444332 222 3457889999999999999999999976653
Q ss_pred CCCCCCCEEEEEEe---------------cCceeEEEEEEcCCCCChhhHhhhhhcccccCCCCCCCCCCCCCCCCcccC
Q psy14548 262 DTDVLPPIEVSVVR---------------GKEDICVKMSDKGGGIPRSVTDMLFHYMYSTAPQPSKSDAHTVPLAGYGYG 326 (482)
Q Consensus 262 ~~~~~p~I~v~~~~---------------~~~~~~i~V~D~G~GI~~~~~~~if~~f~~t~~~~~~~~~~~~~~~G~GLG 326 (482)
|.|.... .++.+.|.|.|+|+|||++.++++|++||+++. ...|+|||
T Consensus 299 -------i~i~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~G~Gi~~~~~~~if~~~~~~~~----------~~~g~GlG 361 (540)
T PRK13557 299 -------VTIRTRNVEIEDEDLAMYHGLPPGRYVSIAVTDTGSGMPPEILARVMDPFFTTKE----------EGKGTGLG 361 (540)
T ss_pred -------EEEEEeeeccCccccccccCCCCCCEEEEEEEcCCCCCCHHHHHhccCCCcccCC----------CCCCCCcc
Confidence 6665542 345789999999999999999999999998642 23699999
Q ss_pred HHHHHHHHHHhCCEEEEEeecCCcEEEEEEeeCCC
Q psy14548 327 LPISRLYARYFHGDIMLLSCDGLGTDAIIYLKALS 361 (482)
Q Consensus 327 L~i~r~~~~~~gG~i~v~s~~g~Gt~f~i~lp~~~ 361 (482)
|+||+.+++.|||+|.+.|.+|.||+|+|+||...
T Consensus 362 L~i~~~~v~~~gG~i~~~s~~~~G~~f~i~lP~~~ 396 (540)
T PRK13557 362 LSMVYGFAKQSGGAVRIYSEVGEGTTVRLYFPASD 396 (540)
T ss_pred HHHHHHHHHHCCCEEEEEecCCCceEEEEEeeCCC
Confidence 99999999999999999999999999999999754
No 38
>PRK11360 sensory histidine kinase AtoS; Provisional
Probab=99.88 E-value=1.3e-20 Score=203.88 Aligned_cols=212 Identities=17% Similarity=0.204 Sum_probs=163.6
Q ss_pred HHHHHHHHHHHHhhchhHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhhHHHHHHHHHHhhccccccCCCCCCc
Q psy14548 104 DKFCKALVKIRNRHSDVVQTMAQGVMELKDSHDVDHQTENSIQYFLDRFYMSRISIRMLINQHTLLFGDELTRGDSSLRH 183 (482)
Q Consensus 104 ~~f~~~l~~~l~~~~~~i~~la~g~~e~~~~~~~~~~~~e~~~~~Ld~i~~sri~~r~Li~~~l~L~~~~~~~~~~~~~~ 183 (482)
.+|...++|++++|++.+...++.+.+. ..+....++++.+......+..++++++.+.+... .
T Consensus 391 ~~~~~~~~hel~~~l~~i~~~~~~~~~~--------~~~~~~~~~l~~i~~~~~~~~~~~~~l~~~~~~~~----~---- 454 (607)
T PRK11360 391 GELVAGVAHEIRNPLTAIRGYVQIWRQQ--------TSDPPSQEYLSVVLREVDRLNKVIDQLLEFSRPRE----S---- 454 (607)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhc--------ccChhHHHHHHHHHHHHHHHHHHHHHHHHhhCCCc----C----
Confidence 3588889999999999987776543322 12456677888888776677778888887764321 1
Q ss_pred ccccCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEeeccCCCCCeEEEechhHHHHHHHHHHHHHHHHhhhcCCCC
Q psy14548 184 IGCIDPQCDLIGVVKDAYENARFLCEQYYLSSPELKVTEHNEYEKGEPVRIIYVPSHLYHMLFELFKNSMRATVEHHTDT 263 (482)
Q Consensus 184 ig~i~~~~~l~~li~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~L~~il~NLl~NAik~t~~~~~~~ 263 (482)
....+++..+++++...+..... ...+.+.+.. ++. ...+..|+..|.+++.||+.||++|+..++.
T Consensus 455 ---~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~--~~~-~~~~~~~~~~l~~~~~nli~na~~~~~~~~~-- 521 (607)
T PRK11360 455 ---QWQPVSLNALVEEVLQLFQTAGV-----QARVDFETEL--DNE-LPPIWADPELLKQVLLNILINAVQAISARGK-- 521 (607)
T ss_pred ---ccceecHHHHHHHHHHHHHHhhh-----ccCcEEEEEc--CCC-CCeEEECHHHHHHHHHHHHHHHHHHhcCCCe--
Confidence 12456999999988887765321 1334444332 222 2357899999999999999999999865433
Q ss_pred CCCCCEEEEEEecCce-eEEEEEEcCCCCChhhHhhhhhcccccCCCCCCCCCCCCCCCCcccCHHHHHHHHHHhCCEEE
Q psy14548 264 DVLPPIEVSVVRGKED-ICVKMSDKGGGIPRSVTDMLFHYMYSTAPQPSKSDAHTVPLAGYGYGLPISRLYARYFHGDIM 342 (482)
Q Consensus 264 ~~~p~I~v~~~~~~~~-~~i~V~D~G~GI~~~~~~~if~~f~~t~~~~~~~~~~~~~~~G~GLGL~i~r~~~~~~gG~i~ 342 (482)
|.|.+...++. +.|.|+|+|+|||++.++++|++||++++ .|+|+||++++.+++.|||+|.
T Consensus 522 -----i~v~~~~~~~~~~~i~v~D~G~G~~~~~~~~~f~~~~~~~~------------~g~glGL~~~~~~~~~~~G~i~ 584 (607)
T PRK11360 522 -----IRIRTWQYSDGQVAVSIEDNGCGIDPELLKKIFDPFFTTKA------------KGTGLGLALSQRIINAHGGDIE 584 (607)
T ss_pred -----EEEEEEEcCCCEEEEEEEeCCCCCCHHHHhhhcCCceeCCC------------CCCchhHHHHHHHHHHcCCEEE
Confidence 88888766665 99999999999999999999999998542 5899999999999999999999
Q ss_pred EEeecCCcEEEEEEeeCCC
Q psy14548 343 LLSCDGLGTDAIIYLKALS 361 (482)
Q Consensus 343 v~s~~g~Gt~f~i~lp~~~ 361 (482)
++|.+|+||+|+++||...
T Consensus 585 ~~s~~~~Gt~~~i~lp~~~ 603 (607)
T PRK11360 585 VESEPGVGTTFTLYLPINP 603 (607)
T ss_pred EEEcCCCceEEEEEecCCC
Confidence 9999999999999999753
No 39
>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=99.86 E-value=9.3e-20 Score=180.67 Aligned_cols=218 Identities=18% Similarity=0.223 Sum_probs=159.8
Q ss_pred HHHHHHHHHHHHHhhchhHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhhHHHHHHHHHHhhccccccCCCCCC
Q psy14548 103 LDKFCKALVKIRNRHSDVVQTMAQGVMELKDSHDVDHQTENSIQYFLDRFYMSRISIRMLINQHTLLFGDELTRGDSSLR 182 (482)
Q Consensus 103 ~~~f~~~l~~~l~~~~~~i~~la~g~~e~~~~~~~~~~~~e~~~~~Ld~i~~sri~~r~Li~~~l~L~~~~~~~~~~~~~ 182 (482)
...|...++|++++|++.+..... ..+.. .......++..+.........++++.+.+.+.....
T Consensus 115 ~~~~~~~~~hel~~pl~~i~~~~~-~~~~~--------~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~------ 179 (336)
T COG0642 115 KREFLANISHELRTPLTAIRGLLE-LLLEG--------LLDPQRELLEIIEEEAERLLRLVNDLLDLSRLEAGT------ 179 (336)
T ss_pred HHHHHHhhhhhhcCcHHHHHHHHH-HhccC--------CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC------
Confidence 578999999999999999987655 11111 001144555555544444455667766666532210
Q ss_pred cccccCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEeeccCCCCCeEEEechhHHHHHHHHHHHHHHHHhhhcCCC
Q psy14548 183 HIGCIDPQCDLIGVVKDAYENARFLCEQYYLSSPELKVTEHNEYEKGEPVRIIYVPSHLYHMLFELFKNSMRATVEHHTD 262 (482)
Q Consensus 183 ~ig~i~~~~~l~~li~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~L~~il~NLl~NAik~t~~~~~~ 262 (482)
.........++..+++++++....... ...+.+.... .....+.+|+..+.+++.||++||++|++ ++
T Consensus 180 ~~~~~~~~~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~~----~~~~~v~~~~~~l~~vl~nLi~NAi~~~~-~~-- 247 (336)
T COG0642 180 KLKLLLELVDLAELLEEVVRLLAPLAQ-----EKGIELAVDL----PELPYVLGDPERLRQVLVNLLSNAIKYTP-GG-- 247 (336)
T ss_pred ccccCCCCcCHHHHHHHHHHHHHHHHH-----HcCCEEEEec----CCCceEeeCHHHHHHHHHHHHHHHhccCC-CC--
Confidence 011113445788888888887776543 1233333211 13567889999999999999999999997 32
Q ss_pred CCCCCCEEEEEEecCceeEEEEEEcCCCCChhhHhhhhhcccccCCCCCCCCCCCCCCCCcccCHHHHHHHHHHhCCEEE
Q psy14548 263 TDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVTDMLFHYMYSTAPQPSKSDAHTVPLAGYGYGLPISRLYARYFHGDIM 342 (482)
Q Consensus 263 ~~~~p~I~v~~~~~~~~~~i~V~D~G~GI~~~~~~~if~~f~~t~~~~~~~~~~~~~~~G~GLGL~i~r~~~~~~gG~i~ 342 (482)
.|.|.+...++.+.++|.|+|+||+++.++++|++|++++... .|+|+||++|+.+++.|||.+.
T Consensus 248 -----~i~i~~~~~~~~i~i~V~D~G~Gi~~~~~~~if~~~~~~~~~~----------~g~GlGL~i~~~~~~~~~g~i~ 312 (336)
T COG0642 248 -----EITISVRQDDEQVTISVEDTGPGIPEEELERIFEPFFRTDKSR----------SGTGLGLAIVKRIVELHGGTIS 312 (336)
T ss_pred -----eEEEEEEecCCeEEEEEEcCCCCCCHHHHHHhccCeeccCCCC----------CCCCccHHHHHHHHHHcCCEEE
Confidence 3999998877789999999999999999999999999976421 2999999999999999999999
Q ss_pred EEeecCCcEEEEEEeeCCCC
Q psy14548 343 LLSCDGLGTDAIIYLKALSN 362 (482)
Q Consensus 343 v~s~~g~Gt~f~i~lp~~~~ 362 (482)
+.+.++.||+|++++|....
T Consensus 313 ~~~~~~~Gt~~~i~lP~~~~ 332 (336)
T COG0642 313 VESEPGKGTTFTIRLPLAPA 332 (336)
T ss_pred EEecCCCceEEEEEEecccc
Confidence 99999899999999998643
No 40
>PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins. The fold of this domain consists of two layers, alpha/beta, which contains an 8-stranded mixed beta-sheet. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0005524 ATP binding; PDB: 3JZ3_A 3DGE_A 2C2A_A 2BU5_A 2BU8_A 2BU6_A 2BU7_A 2BU2_A 2BTZ_A 3K99_D ....
Probab=99.84 E-value=2.4e-20 Score=158.10 Aligned_cols=110 Identities=25% Similarity=0.464 Sum_probs=100.4
Q ss_pred echhHHHHHHHHHHHHHHHHhhhcCCCCCCCCCEEEEEEecCceeEEEEEEcCCCCChhhHhhhhhcccccCCCCCCCCC
Q psy14548 236 YVPSHLYHMLFELFKNSMRATVEHHTDTDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVTDMLFHYMYSTAPQPSKSDA 315 (482)
Q Consensus 236 ~d~~~L~~il~NLl~NAik~t~~~~~~~~~~p~I~v~~~~~~~~~~i~V~D~G~GI~~~~~~~if~~f~~t~~~~~~~~~ 315 (482)
+|+.+|.+++.||+.||++|+.+++. |.|.+...++.+.|+|+|+|.|||++.++++|++|++++.
T Consensus 1 gd~~~l~~il~~ll~Na~~~~~~~~~-------I~i~~~~~~~~~~i~i~d~G~gi~~~~l~~~~~~~~~~~~------- 66 (111)
T PF02518_consen 1 GDPDRLRQILSELLDNAIKHSPEGGK-------IDITIEEDDDHLSIEISDNGVGIPPEELEKLFEPFFTSDK------- 66 (111)
T ss_dssp ETHHHHHHHHHHHHHHHHHHHHHTSE-------EEEEEEEETTEEEEEEEESSSSTTHHHHHHHCSTTSHSSS-------
T ss_pred CcHHHHHHHHHHHHHHHHHHhcCCCE-------EEEEEEEecCeEEEEEEeccccccccccccchhhcccccc-------
Confidence 68999999999999999999998654 9999999999999999999999999999999999998653
Q ss_pred CCCCCCCcccCHHHHHHHHHHhCCEEEEEeecCCcEEEEEEeeC
Q psy14548 316 HTVPLAGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLKA 359 (482)
Q Consensus 316 ~~~~~~G~GLGL~i~r~~~~~~gG~i~v~s~~g~Gt~f~i~lp~ 359 (482)
......|+|+||++|+.+++.|+|++.+.+..+.||+|.+++|.
T Consensus 67 ~~~~~~g~GlGL~~~~~~~~~~~g~l~~~~~~~~gt~v~~~~p~ 110 (111)
T PF02518_consen 67 SETSISGHGLGLYIVKQIAERHGGELTIESSEGGGTTVTFTLPL 110 (111)
T ss_dssp SSGGSSSSSHHHHHHHHHHHHTTEEEEEEEETTTEEEEEEEEEG
T ss_pred cccccCCCChHHHHHHHHHHHCCCEEEEEEcCCCcEEEEEEEEC
Confidence 12334689999999999999999999999999999999999995
No 41
>PRK15053 dpiB sensor histidine kinase DpiB; Provisional
Probab=99.83 E-value=7.2e-19 Score=189.51 Aligned_cols=117 Identities=21% Similarity=0.279 Sum_probs=100.1
Q ss_pred eEEEechhHHHHHHHHHHHHHHHHhhhcCCCCCCCCCEEEEEEecCceeEEEEEEcCCCCChhhHhhhhhcccccCCCCC
Q psy14548 232 VRIIYVPSHLYHMLFELFKNSMRATVEHHTDTDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVTDMLFHYMYSTAPQPS 311 (482)
Q Consensus 232 ~~v~~d~~~L~~il~NLl~NAik~t~~~~~~~~~~p~I~v~~~~~~~~~~i~V~D~G~GI~~~~~~~if~~f~~t~~~~~ 311 (482)
+....|+..|.+++.||++||++|...... ....|.|.+...++.+.|.|+|+|+|||++..+++|++||+++.
T Consensus 424 l~~~~~~~~l~~vl~nLl~NAi~~~~~~~~---~~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~iF~~~~~tk~--- 497 (545)
T PRK15053 424 LPPGLDSTEFAAIVGNLLDNAFEASLRSDE---GNKIVELFLSDEGDDVVIEVADQGCGVPESLRDKIFEQGVSTRA--- 497 (545)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHHhhCCC---CCceEEEEEEECCCEEEEEEEeCCCCcCHHHHHHHhCCCCCCCC---
Confidence 345678999999999999999999743211 11238888888888999999999999999999999999999653
Q ss_pred CCCCCCCCCCCcccCHHHHHHHHHHhCCEEEEEeecCCcEEEEEEeeCC
Q psy14548 312 KSDAHTVPLAGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLKAL 360 (482)
Q Consensus 312 ~~~~~~~~~~G~GLGL~i~r~~~~~~gG~i~v~s~~g~Gt~f~i~lp~~ 360 (482)
...+|+||||+|||.+++.|||+|+++|.+|.||+|+++||..
T Consensus 498 ------~~~~g~GlGL~ivk~iv~~~~G~i~v~s~~~~Gt~f~i~lP~~ 540 (545)
T PRK15053 498 ------DEPGEHGIGLYLIASYVTRCGGVITLEDNDPCGTLFSIFIPKV 540 (545)
T ss_pred ------CCCCCceeCHHHHHHHHHHcCCEEEEEECCCCeEEEEEEECCC
Confidence 2235899999999999999999999999999999999999974
No 42
>PRK11086 sensory histidine kinase DcuS; Provisional
Probab=99.81 E-value=2e-18 Score=185.43 Aligned_cols=108 Identities=25% Similarity=0.277 Sum_probs=95.1
Q ss_pred chhHHHHHHHHHHHHHHHHhhhcCCCCCCCCCEEEEEEecCceeEEEEEEcCCCCChhhHhhhhhcccccCCCCCCCCCC
Q psy14548 237 VPSHLYHMLFELFKNSMRATVEHHTDTDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVTDMLFHYMYSTAPQPSKSDAH 316 (482)
Q Consensus 237 d~~~L~~il~NLl~NAik~t~~~~~~~~~~p~I~v~~~~~~~~~~i~V~D~G~GI~~~~~~~if~~f~~t~~~~~~~~~~ 316 (482)
+...|.+|+.||++||++|+.... .+.|.|++...++.+.|.|+|+|+|||++.++++|++||+++.
T Consensus 430 ~~~~l~~vl~nLl~NAi~~~~~~~-----~~~I~i~~~~~~~~~~i~V~D~G~gi~~~~~~~iF~~~~~~~~-------- 496 (542)
T PRK11086 430 QVHELITILGNLIENALEAVGGEE-----GGEISVSLHYRNGWLHCEVSDDGPGIAPDEIDAIFDKGYSTKG-------- 496 (542)
T ss_pred cHHHHHHHHHHHHHHHHHHhhcCC-----CcEEEEEEEEcCCEEEEEEEECCCCCCHHHHHHHHhCCCccCC--------
Confidence 345799999999999999975321 1238888888888999999999999999999999999998542
Q ss_pred CCCCCCcccCHHHHHHHHHHhCCEEEEEeecCCcEEEEEEeeCCC
Q psy14548 317 TVPLAGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLKALS 361 (482)
Q Consensus 317 ~~~~~G~GLGL~i~r~~~~~~gG~i~v~s~~g~Gt~f~i~lp~~~ 361 (482)
.|+||||++||.+++.|||+|+++|.+|.||+|+++||...
T Consensus 497 ----~g~GlGL~iv~~iv~~~~G~i~v~s~~~~G~~f~i~lP~~~ 537 (542)
T PRK11086 497 ----SNRGVGLYLVKQSVENLGGSIAVESEPGVGTQFFVQIPWDG 537 (542)
T ss_pred ----CCCcCcHHHHHHHHHHcCCEEEEEeCCCCcEEEEEEEeCCC
Confidence 58999999999999999999999999999999999999753
No 43
>PRK13560 hypothetical protein; Provisional
Probab=99.80 E-value=1.7e-18 Score=194.40 Aligned_cols=201 Identities=12% Similarity=0.122 Sum_probs=130.3
Q ss_pred hHHHHHHHHHHHHHhhchhHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhhHHHHHHHHHHhhccccccCCCCC
Q psy14548 102 TLDKFCKALVKIRNRHSDVVQTMAQGVMELKDSHDVDHQTENSIQYFLDRFYMSRISIRMLINQHTLLFGDELTRGDSSL 181 (482)
Q Consensus 102 ~~~~f~~~l~~~l~~~~~~i~~la~g~~e~~~~~~~~~~~~e~~~~~Ld~i~~sri~~r~Li~~~l~L~~~~~~~~~~~~ 181 (482)
+...|...++|++++|++.|..++..+.+.. .++....++...... ++.+...+..+... ..
T Consensus 604 ~~~~~l~~isHelrnpL~~I~~~~~l~~~~~--------~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~------~~- 665 (807)
T PRK13560 604 EKEVLLKEIHHRVKNNLQIISSLLDLQAEKL--------HDEEAKCAFAESQDR---ICAMALAHEKLYQS------ED- 665 (807)
T ss_pred HHHHHHHHhHHHHhChHHHHHHHHHHhhhhc--------CCHHHHHHHHHHHHH---HHHHHHHHHHHhcc------cc-
Confidence 4568999999999999999977665332211 223344444433321 12221112222211 11
Q ss_pred CcccccCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEeeccCCCCCeEEEechhHHHHHHHHHHHHHHHHhhhcCC
Q psy14548 182 RHIGCIDPQCDLIGVVKDAYENARFLCEQYYLSSPELKVTEHNEYEKGEPVRIIYVPSHLYHMLFELFKNSMRATVEHHT 261 (482)
Q Consensus 182 ~~ig~i~~~~~l~~li~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~L~~il~NLl~NAik~t~~~~~ 261 (482)
...+++.++++++...+..... .....+.+... .........+...+.+|+.||+.||+||+..++.
T Consensus 666 ------~~~~~l~~~i~~~~~~~~~~~~-----~~~~~~~~~~~--~~~~~~~~~~~~~~~~il~NLl~NAik~~~~~~~ 732 (807)
T PRK13560 666 ------LADIDFLDYIESLTAHLKNSFA-----IDFGRIDCKID--ADDGCLDIDKAIPCGLIISELLSNALKHAFPDGA 732 (807)
T ss_pred ------chhccHHHHHHHHHHHHHHHhc-----cccCceEEEEe--cCccccccccccchHHHHHHHHHHHHHhhccCCC
Confidence 1245888888888877765322 12222332221 1222222344556889999999999999865432
Q ss_pred CCCCCCCEEEEEEec-CceeEEEEEEcCCCCChhhHhhhhhcccccCCCCCCCCCCCCCCCCcccCHHHHHHHHHHhCCE
Q psy14548 262 DTDVLPPIEVSVVRG-KEDICVKMSDKGGGIPRSVTDMLFHYMYSTAPQPSKSDAHTVPLAGYGYGLPISRLYARYFHGD 340 (482)
Q Consensus 262 ~~~~~p~I~v~~~~~-~~~~~i~V~D~G~GI~~~~~~~if~~f~~t~~~~~~~~~~~~~~~G~GLGL~i~r~~~~~~gG~ 340 (482)
.+.|.|.+... ++.+.|.|+|||+|||++.. ++ .|.||||+|||.+++.|||+
T Consensus 733 ----~~~i~i~~~~~~~~~v~i~V~D~G~GI~~~~~-------~~---------------~~~gLGLai~~~iv~~~gG~ 786 (807)
T PRK13560 733 ----AGNIKVEIREQGDGMVNLCVADDGIGLPAGFD-------FR---------------AAETLGLQLVCALVKQLDGE 786 (807)
T ss_pred ----CceEEEEEEEcCCCEEEEEEEeCCCcCCcccc-------cc---------------ccCCccHHHHHHHHHHcCCE
Confidence 12388888766 67899999999999999731 11 46789999999999999999
Q ss_pred EEEEeecCCcEEEEEEeeCCC
Q psy14548 341 IMLLSCDGLGTDAIIYLKALS 361 (482)
Q Consensus 341 i~v~s~~g~Gt~f~i~lp~~~ 361 (482)
|+++| ++||+|+|+||..+
T Consensus 787 I~v~S--~~Gt~F~i~lP~~~ 805 (807)
T PRK13560 787 IALDS--RGGARFNIRFPMSP 805 (807)
T ss_pred EEEEc--CCceEEEEEecCCC
Confidence 99998 47999999999753
No 44
>KOG0787|consensus
Probab=99.80 E-value=2.5e-20 Score=181.43 Aligned_cols=186 Identities=30% Similarity=0.415 Sum_probs=121.4
Q ss_pred hhHHHHHHHHHHHHHHHHhhhcCCCCCCCCCEEEEEEecCceeEEEEEEcCCCCChhhHhhhhhcccccCCCCCCCCCCC
Q psy14548 238 PSHLYHMLFELFKNSMRATVEHHTDTDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVTDMLFHYMYSTAPQPSKSDAHT 317 (482)
Q Consensus 238 ~~~L~~il~NLl~NAik~t~~~~~~~~~~p~I~v~~~~~~~~~~i~V~D~G~GI~~~~~~~if~~f~~t~~~~~~~~~~~ 317 (482)
.--+.+|+....+|| ++.++... ...|.+.|.-. ..+.+. .=+|..----+||-|-.
T Consensus 215 ~c~v~~vi~~a~e~a-r~lCd~yy--~~sPel~i~~~---~a~~~~-----vyvPshL~ymlfElfKN------------ 271 (414)
T KOG0787|consen 215 RCSVKKVIKDASENA-RFLCDQYY--LNSPELIIEGH---NALSFT-----VYVPSHLYYMLFELFKN------------ 271 (414)
T ss_pred CCCHHHHHHHHHHHH-HHHHHHhc--cCCCeeEecCc---ccccCc-----cccchHHHHHHHHHHHH------------
Confidence 445789999999999 56665543 22333443321 112211 12455444445666644
Q ss_pred CCCCCcccCHHHHHHHHHHhCCEEEEEeecCCcEEEEEEeeCCCCcccccccccccccccccccCCCCCCCcccccc-cc
Q psy14548 318 VPLAGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLKALSNEANELLPIFNKTSSKFYRATIPTGDWSSTQSA-CM 396 (482)
Q Consensus 318 ~~~~G~GLGL~i~r~~~~~~gG~i~v~s~~g~Gt~f~i~lp~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 396 (482)
-.|.-+|.|+-+-. + =..+.|.+-. +.|++.+ ++++.+|+...-.-+ ..
T Consensus 272 -----------amrATve~h~~~~~-----~-~ppI~V~V~~----gdeDl~i---------kISDrGGGV~~~~~drlf 321 (414)
T KOG0787|consen 272 -----------AMRATVEHHGDDGD-----E-LPPIKVTVAK----GDEDLLI---------KISDRGGGVPHRDIDRLF 321 (414)
T ss_pred -----------HHHHHHHHhccCCC-----C-CCCeEEEEec----CCcceEE---------EEecCCCCcChhHHHHHH
Confidence 24566676653321 0 1112222211 2234433 677777773222222 23
Q ss_pred cccCCcccccCCCCCCCCCCCCCCcccCCCCcccchhhhhcccCCceeEEecccccccEEEEecccCccccccccchhcc
Q psy14548 397 EHRHPTISQSKTSSKHVPSDAHTVPLAGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLKALSNEANELLPIFNKT 476 (482)
Q Consensus 397 ~~~~~t~~~~~~~~~~~~~~~~~~pla~~g~glp~~~~~a~~~~~~~~~~~~~g~g~d~~~~~~~~~~~~~~~~~~~~~~ 476 (482)
.|++.|+.+.. ....+..||||+|+|||+||+||+||||+++|+||+|||||+||+|++++.++.|.|||||++
T Consensus 322 ~Y~ySTa~~~~------~d~~~~~plaGfG~GLPisrlYa~yf~Gdl~L~SleG~GTD~yI~Lk~ls~~~~e~l~i~~k~ 395 (414)
T KOG0787|consen 322 SYMYSTAPAPS------SDNNRTAPLAGFGFGLPISRLYARYFGGDLKLQSLEGIGTDVYIYLKALSMEAPESLPIYNKS 395 (414)
T ss_pred hhhcccCCCCC------CCCCCcCcccccccCCcHHHHHHHHhCCCeeEEeeeccccceEEEeccCCccchhhccccccc
Confidence 88888775322 223347899999999999999999999999999999999999999999999999999999999
Q ss_pred cccccC
Q psy14548 477 SSKFYR 482 (482)
Q Consensus 477 ~~~~~~ 482 (482)
||+||+
T Consensus 396 ~~~~~~ 401 (414)
T KOG0787|consen 396 AWRHYE 401 (414)
T ss_pred chhHHh
Confidence 999995
No 45
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]
Probab=99.78 E-value=2.3e-17 Score=169.24 Aligned_cols=207 Identities=21% Similarity=0.311 Sum_probs=140.7
Q ss_pred hhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhhHHHHHHHHHHhhccccccCCCC
Q psy14548 101 DTLDKFCKALVKIRNRHSDVVQTMAQGVMELKDSHDVDHQTENSIQYFLDRFYMSRISIRMLINQHTLLFGDELTRGDSS 180 (482)
Q Consensus 101 ~~~~~f~~~l~~~l~~~~~~i~~la~g~~e~~~~~~~~~~~~e~~~~~Ld~i~~sri~~r~Li~~~l~L~~~~~~~~~~~ 180 (482)
....+|.+.|+.--|.+.|-+.++. |+.++.+. ++..+|+....... +-+++......+
T Consensus 328 t~vr~ya~aLRaq~HEfmNkLhtI~-GLlql~~y--------d~a~~~I~~~~~~q---q~~~~~l~~~i~--------- 386 (537)
T COG3290 328 TGVRQYAEALRAQSHEFMNKLHTIL-GLLQLGEY--------DDALDYIQQESEEQ---QELIDSLSEKIK--------- 386 (537)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHH-HHHhhccH--------HHHHHHHHHHHhhh---hhhHHHHHHhcc---------
Confidence 3456777777766666766666665 66666542 45566666555221 112121111110
Q ss_pred CCcccccCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEeeccCCCCCeEEEechhHHHHHHHHHHHHHHHHhhhcC
Q psy14548 181 LRHIGCIDPQCDLIGVVKDAYENARFLCEQYYLSSPELKVTEHNEYEKGEPVRIIYVPSHLYHMLFELFKNSMRATVEHH 260 (482)
Q Consensus 181 ~~~ig~i~~~~~l~~li~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~L~~il~NLl~NAik~t~~~~ 260 (482)
.. -++.++-.-++.++.+ ...+.|+....++ +..-..++..+--|+.||++||+.++....
T Consensus 387 ~~---------~lAg~LlgK~~rArEl-------gv~l~Id~~S~l~---~~p~~~~~~~litIlGNLidNA~eA~~~~~ 447 (537)
T COG3290 387 DP---------VLAGFLLGKISRAREL-------GVSLIIDPNSQLP---QLPSELQPHDLVTILGNLIDNALEALLAPE 447 (537)
T ss_pred cH---------HHHHHHHhHHHHHHHc-------CceEEEcCCCcCC---CCCCccChHHHHHHHHHHHHHHHHHhhccC
Confidence 00 2344443344444431 1222222211111 122456788899999999999999997321
Q ss_pred CCCCCCCCEEEEEEecCceeEEEEEEcCCCCChhhHhhhhhcccccCCCCCCCCCCCCCCCCcccCHHHHHHHHHHhCCE
Q psy14548 261 TDTDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVTDMLFHYMYSTAPQPSKSDAHTVPLAGYGYGLPISRLYARYFHGD 340 (482)
Q Consensus 261 ~~~~~~p~I~v~~~~~~~~~~i~V~D~G~GI~~~~~~~if~~f~~t~~~~~~~~~~~~~~~G~GLGL~i~r~~~~~~gG~ 340 (482)
....|.+.+...++.+.|+|.|+|+|||++..+++|+..|+|+. .++.|+||++++.+++.+||.
T Consensus 448 ----~~k~I~l~i~~~~~~lvieV~D~G~GI~~~~~~~iFe~G~Stk~-----------~~~rGiGL~Lvkq~V~~~~G~ 512 (537)
T COG3290 448 ----ENKEIELSLSDRGDELVIEVADTGPGIPPEVRDKIFEKGVSTKN-----------TGGRGIGLYLVKQLVERLGGS 512 (537)
T ss_pred ----CCcEEEEEEEecCCEEEEEEeCCCCCCChHHHHHHHhcCccccC-----------CCCCchhHHHHHHHHHHcCce
Confidence 12349999999999999999999999999999999999999763 268999999999999999999
Q ss_pred EEEEeecCCcEEEEEEeeCCCC
Q psy14548 341 IMLLSCDGLGTDAIIYLKALSN 362 (482)
Q Consensus 341 i~v~s~~g~Gt~f~i~lp~~~~ 362 (482)
|.++|..+.||+|.++||....
T Consensus 513 I~~~s~~~~Gt~F~i~iP~~~~ 534 (537)
T COG3290 513 IEVESEKGQGTRFSIYIPKVKE 534 (537)
T ss_pred EEEeeCCCCceEEEEECCCCcc
Confidence 9999999999999999998643
No 46
>PRK11644 sensory histidine kinase UhpB; Provisional
Probab=99.76 E-value=7e-17 Score=171.85 Aligned_cols=193 Identities=11% Similarity=0.099 Sum_probs=134.2
Q ss_pred HHHHHHHHHHHHHhhchhHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhhHHHHHHHHHHhhccccccCCCCCC
Q psy14548 103 LDKFCKALVKIRNRHSDVVQTMAQGVMELKDSHDVDHQTENSIQYFLDRFYMSRISIRMLINQHTLLFGDELTRGDSSLR 182 (482)
Q Consensus 103 ~~~f~~~l~~~l~~~~~~i~~la~g~~e~~~~~~~~~~~~e~~~~~Ld~i~~sri~~r~Li~~~l~L~~~~~~~~~~~~~ 182 (482)
.+++...+.|++++|++.|.+.++.+.+.. .++++..+..+.+.+....+...+.+.+...+. .
T Consensus 302 r~~ia~elhdeI~~pLtaI~~~a~ll~~~~-------~~~~~~~~~~~~I~~~~~~l~~~vr~LL~~lr~------~--- 365 (495)
T PRK11644 302 RRDVARELHDEIGQTITAIRTQAGIIKRLA-------ADNASVKQSAQLIEQLSLGVYDTVRRLLGRLRP------R--- 365 (495)
T ss_pred HHHHHHHhhhhhhhHHHHHHHHHHHHHhhc-------cCChHHHHHHHHHHHHHHHHHHHHHHHHhccCC------c---
Confidence 346777888888889888877665443321 123445555666654333333345555433321 1
Q ss_pred cccccCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEeeccCCCCCeEEEechhHHHHHHHHHHHHHHHHhhhcCCC
Q psy14548 183 HIGCIDPQCDLIGVVKDAYENARFLCEQYYLSSPELKVTEHNEYEKGEPVRIIYVPSHLYHMLFELFKNSMRATVEHHTD 262 (482)
Q Consensus 183 ~ig~i~~~~~l~~li~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~L~~il~NLl~NAik~t~~~~~~ 262 (482)
..+.+++.+.++++++..... ..++.+.++...++ ......++..+.+++.|++.||+||+..+.
T Consensus 366 ----~l~~~~L~~~l~~l~~~l~~~-------~~~~~v~l~~~~~~--~~l~~~~~~~L~ril~nlL~NAiKha~~~~-- 430 (495)
T PRK11644 366 ----QLDDLTLEQAIRSLMREMELE-------DRGIVSHLDWRIDE--SALSETQRVTLFRVCQEGLNNIVKHADASA-- 430 (495)
T ss_pred ----ccccCCHHHHHHHHHHHHHHh-------hcCceEEEEecCCc--ccCChhHHHHHHHHHHHHHHHHHHhCCCCE--
Confidence 123458888888887766531 23344443332222 223456778899999999999999985432
Q ss_pred CCCCCCEEEEEEecCceeEEEEEEcCCCCChhhHhhhhhcccccCCCCCCCCCCCCCCCCcccCHHHHHHHHHHhCCEEE
Q psy14548 263 TDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVTDMLFHYMYSTAPQPSKSDAHTVPLAGYGYGLPISRLYARYFHGDIM 342 (482)
Q Consensus 263 ~~~~p~I~v~~~~~~~~~~i~V~D~G~GI~~~~~~~if~~f~~t~~~~~~~~~~~~~~~G~GLGL~i~r~~~~~~gG~i~ 342 (482)
|.|++...++.+.++|+|+|+|||+++ .|.|+||+++|.+++.|||++.
T Consensus 431 ------I~I~l~~~~~~i~l~V~DnG~Gi~~~~-------------------------~~~GLGL~ivr~iv~~~GG~i~ 479 (495)
T PRK11644 431 ------VTLQGWQQDERLMLVIEDDGSGLPPGS-------------------------GQQGFGLRGMRERVTALGGTLT 479 (495)
T ss_pred ------EEEEEEEcCCEEEEEEEECCCCCCcCC-------------------------CCCCCcHHHHHHHHHHcCCEEE
Confidence 899988888899999999999998752 3679999999999999999999
Q ss_pred EEeecCCcEEEEEEeeC
Q psy14548 343 LLSCDGLGTDAIIYLKA 359 (482)
Q Consensus 343 v~s~~g~Gt~f~i~lp~ 359 (482)
++| ++||+|++++|.
T Consensus 480 v~S--~~Gt~f~I~LP~ 494 (495)
T PRK11644 480 ISC--THGTRLSVSLPQ 494 (495)
T ss_pred EEc--CCCEEEEEEEeC
Confidence 998 789999999996
No 47
>COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms]
Probab=99.75 E-value=2.6e-16 Score=156.57 Aligned_cols=216 Identities=16% Similarity=0.179 Sum_probs=162.8
Q ss_pred HHHHHHHHHHHHHhhchhHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhhHHHHHHHHHHhhccccccCCCCCC
Q psy14548 103 LDKFCKALVKIRNRHSDVVQTMAQGVMELKDSHDVDHQTENSIQYFLDRFYMSRISIRMLINQHTLLFGDELTRGDSSLR 182 (482)
Q Consensus 103 ~~~f~~~l~~~l~~~~~~i~~la~g~~e~~~~~~~~~~~~e~~~~~Ld~i~~sri~~r~Li~~~l~L~~~~~~~~~~~~~ 182 (482)
..+-...++|++..|++.+..+.-......+ ....+....+|+.+..=..++-.+++.+-...++-....
T Consensus 451 VGqTmTslaHEinQPLnAmsaYLFsA~~A~e-----~~~s~qa~~~L~kie~L~eR~~~Iv~sLRqF~Rk~s~~~----- 520 (673)
T COG4192 451 VGQTMTSLAHEINQPLNAMSAYLFSARLALE-----EAPSAQAATSLDKIENLTERMGKIVNSLRQFARKNSSDE----- 520 (673)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHh-----hCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC-----
Confidence 3455677899999999998776543332222 224567778888887544444456666555554321111
Q ss_pred cccccCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEeeccCCCCCeEEEechhHHHHHHHHHHHHHHHHhhhcCCC
Q psy14548 183 HIGCIDPQCDLIGVVKDAYENARFLCEQYYLSSPELKVTEHNEYEKGEPVRIIYVPSHLYHMLFELFKNSMRATVEHHTD 262 (482)
Q Consensus 183 ~ig~i~~~~~l~~li~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~L~~il~NLl~NAik~t~~~~~~ 262 (482)
--.++++.++++.+.+.+..- +...++.+.. |-+.+.+.+|...++||+.||+-||+.++...
T Consensus 521 ----~lqpV~L~~~v~~AweLl~~k-------hk~rQ~~Li~---ptD~~~V~gd~v~ieQVlvNl~~NaldA~~h~--- 583 (673)
T COG4192 521 ----SLQPVRLNSVVEQAWELLQTK-------HKRRQIKLIN---PTDDLMVMGDAVSIEQVLVNLIVNALDASTHF--- 583 (673)
T ss_pred ----CcccccHHHHHHHHHHHHHhh-------hhhccccccC---CcccceecchhhhHHHHHHHHHHHHHhhhccC---
Confidence 124569999999999988762 3333333322 44568899999999999999999999998332
Q ss_pred CCCCCCEEEEEEe-cCceeEEEEEEcCCCCChhhHhhhhhcccccCCCCCCCCCCCCCCCCcccCHHHHHHHHHHhCCEE
Q psy14548 263 TDVLPPIEVSVVR-GKEDICVKMSDKGGGIPRSVTDMLFHYMYSTAPQPSKSDAHTVPLAGYGYGLPISRLYARYFHGDI 341 (482)
Q Consensus 263 ~~~~p~I~v~~~~-~~~~~~i~V~D~G~GI~~~~~~~if~~f~~t~~~~~~~~~~~~~~~G~GLGL~i~r~~~~~~gG~i 341 (482)
.|.|.+.+.. ..+.++|-|.|+|.|.|.+-.+++|.||.+++. -|.||||+||..+++.+.|+|
T Consensus 584 ---~p~i~~~~~~~~~e~l~i~i~DnGqGwp~~l~dkLl~PFttsK~------------vgLGlGLSIsqSlmeqmqG~l 648 (673)
T COG4192 584 ---APWIKLIALGTEQEMLRIAIIDNGQGWPHELVDKLLTPFTTSKE------------VGLGLGLSISQSLMEQMQGRL 648 (673)
T ss_pred ---CceEEEEeecCcccceEEEEecCCCCCchhHHHHhcCCcccccc------------cccccchhHHHHHHHHhcCcc
Confidence 2668888876 567899999999999999999999999988764 499999999999999999999
Q ss_pred EEEeecCCcEEEEEEeeCC
Q psy14548 342 MLLSCDGLGTDAIIYLKAL 360 (482)
Q Consensus 342 ~v~s~~g~Gt~f~i~lp~~ 360 (482)
.+.|...+|.++.+.|...
T Consensus 649 ~lAStLt~nA~ViL~f~v~ 667 (673)
T COG4192 649 ALASTLTKNAMVILEFQVD 667 (673)
T ss_pred hHhhhcccCcEEEEEEeec
Confidence 9999999999999888754
No 48
>PRK10547 chemotaxis protein CheA; Provisional
Probab=99.68 E-value=1.8e-15 Score=163.78 Aligned_cols=152 Identities=22% Similarity=0.271 Sum_probs=115.7
Q ss_pred CHHHHHHHHHHHHHHHHHHhhcCCCCceEEEeeccCCCCCeEEEechhHHHHH---HHHHHHHHHHHhhhcCCC-----C
Q psy14548 192 DLIGVVKDAYENARFLCEQYYLSSPELKVTEHNEYEKGEPVRIIYVPSHLYHM---LFELFKNSMRATVEHHTD-----T 263 (482)
Q Consensus 192 ~l~~li~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~L~~i---l~NLl~NAik~t~~~~~~-----~ 263 (482)
.+..+.+..-..++.++... .+.+.+... .. .+..|+..+.++ |.||++||++|+.+.... .
T Consensus 344 p~~~~~~~~~rlvrdla~~~-----gk~v~l~~~---g~--~~~lD~~~l~~l~dpL~hLirNAidHgie~p~~R~~~gk 413 (670)
T PRK10547 344 PMEYVFSRFPRLVRDLAGKL-----GKQVELTLV---GS--STELDKSLIERIIDPLTHLVRNSLDHGIELPEKRLAAGK 413 (670)
T ss_pred cHHHHHHHHHHHHHHHHHHc-----CCcEEEEEe---CC--ceecCHHHHHHHHHHHHHHHHHHHHhhccchhhHHhcCC
Confidence 56667777777777766542 234443331 22 256899999988 679999999998553211 1
Q ss_pred CCCCCEEEEEEecCceeEEEEEEcCCCCChhhHh---------------------hhhhcccccCCCCCCCCCCCCCCCC
Q psy14548 264 DVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVTD---------------------MLFHYMYSTAPQPSKSDAHTVPLAG 322 (482)
Q Consensus 264 ~~~p~I~v~~~~~~~~~~i~V~D~G~GI~~~~~~---------------------~if~~f~~t~~~~~~~~~~~~~~~G 322 (482)
...+.|.|.+...++.+.|.|+|+|.||+++.+. .||+|+|+|+.. ....+|
T Consensus 414 p~~G~I~l~a~~~~~~v~I~V~DdG~GId~e~i~~~a~~~Gl~~~~~ls~~e~~~lIF~pgfst~~~-------~~~~sG 486 (670)
T PRK10547 414 NSVGNLILSAEHQGGNICIEVTDDGAGLNRERILAKAASQGLAVSENMSDEEVGMLIFAPGFSTAEQ-------VTDVSG 486 (670)
T ss_pred CCCCceEEEEEEcCCEEEEEEEeCCCCCCHHHHHHHHHHcCCCccccCCHHHHHHHhhcCCcccccc-------cccCCC
Confidence 2234599999888899999999999999997653 699998887531 223479
Q ss_pred cccCHHHHHHHHHHhCCEEEEEeecCCcEEEEEEeeCC
Q psy14548 323 YGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLKAL 360 (482)
Q Consensus 323 ~GLGL~i~r~~~~~~gG~i~v~s~~g~Gt~f~i~lp~~ 360 (482)
.|+||.+||.+++.|||+|.+.|.+|+||+|+++||..
T Consensus 487 rGvGL~iVk~~ve~lgG~I~v~S~~g~Gt~f~i~LPlt 524 (670)
T PRK10547 487 RGVGMDVVKRNIQEMGGHVEIQSKQGKGTTIRILLPLT 524 (670)
T ss_pred CchhHHHHHHHHHHcCCEEEEEecCCCcEEEEEEEech
Confidence 99999999999999999999999999999999999974
No 49
>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional
Probab=99.64 E-value=2e-14 Score=155.52 Aligned_cols=196 Identities=16% Similarity=0.156 Sum_probs=125.5
Q ss_pred HHHHHHHHHhhchhHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhhHHHHHHHHHHhhccccccCCCCCCcccc
Q psy14548 107 CKALVKIRNRHSDVVQTMAQGVMELKDSHDVDHQTENSIQYFLDRFYMSRISIRMLINQHTLLFGDELTRGDSSLRHIGC 186 (482)
Q Consensus 107 ~~~l~~~l~~~~~~i~~la~g~~e~~~~~~~~~~~~e~~~~~Ld~i~~sri~~r~Li~~~l~L~~~~~~~~~~~~~~ig~ 186 (482)
...++|+++++...+......-..+.... .+ .+.+...+.+..+..........+.+++..++ ..
T Consensus 364 ~~~la~el~~~l~~~l~~~~~~~~~l~~~-~~-~~~~~~~~~l~~~~~~~~~~~~~l~~l~~~~~-------~~------ 428 (565)
T PRK10935 364 RATIARELHDSLAQVLSYLKIQLTLLKRS-LD-EDNAKAQSIIAEFDQALSDAYRQLRELLTTFR-------LT------ 428 (565)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHh-cc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-------CC------
Confidence 34577888888777766665433322211 11 12334444444433221111112233332221 11
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEeeccCCCCCeEEEechhHHHHHHHHHHHHHHHHhhhcCCCCCCC
Q psy14548 187 IDPQCDLIGVVKDAYENARFLCEQYYLSSPELKVTEHNEYEKGEPVRIIYVPSHLYHMLFELFKNSMRATVEHHTDTDVL 266 (482)
Q Consensus 187 i~~~~~l~~li~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~L~~il~NLl~NAik~t~~~~~~~~~~ 266 (482)
...+++.+.+++++..++.. ....+.+....+. ......++..+.|++.|++.||+||+..+.
T Consensus 429 -~~~~~l~~~l~~~~~~~~~~--------~~~~i~~~~~~~~--~~~~~~~~~~l~qv~~nll~NA~k~~~~~~------ 491 (565)
T PRK10935 429 -IQEANLGSALEEMLDQLRNQ--------TDAKITLDCRLPS--QALDAQQQVHLLQIIREATLNAIKHANASE------ 491 (565)
T ss_pred -CCCCCHHHHHHHHHHHHHHh--------hCCeEEEEeeCCC--CCCCHHHHHHHHHHHHHHHHHHHhcCCCCe------
Confidence 12458889999888877641 2233333322211 222334456799999999999999985433
Q ss_pred CCEEEEEEec-CceeEEEEEEcCCCCChhhHhhhhhcccccCCCCCCCCCCCCCCCCcccCHHHHHHHHHHhCCEEEEEe
Q psy14548 267 PPIEVSVVRG-KEDICVKMSDKGGGIPRSVTDMLFHYMYSTAPQPSKSDAHTVPLAGYGYGLPISRLYARYFHGDIMLLS 345 (482)
Q Consensus 267 p~I~v~~~~~-~~~~~i~V~D~G~GI~~~~~~~if~~f~~t~~~~~~~~~~~~~~~G~GLGL~i~r~~~~~~gG~i~v~s 345 (482)
|.|.+... ++.+.|.|.|+|+|||++. ..|.|+||+||+.+++.|||+|++.|
T Consensus 492 --i~i~~~~~~~~~~~i~V~D~G~Gi~~~~------------------------~~~~glGL~i~~~iv~~~~G~i~v~s 545 (565)
T PRK10935 492 --IAVSCVTNPDGEHTVSIRDDGIGIGELK------------------------EPEGHYGLNIMQERAERLGGTLTISQ 545 (565)
T ss_pred --EEEEEEEcCCCEEEEEEEECCcCcCCCC------------------------CCCCCcCHHHHHHHHHHcCCEEEEEE
Confidence 88888765 6779999999999999742 03789999999999999999999999
Q ss_pred ecCCcEEEEEEeeCC
Q psy14548 346 CDGLGTDAIIYLKAL 360 (482)
Q Consensus 346 ~~g~Gt~f~i~lp~~ 360 (482)
.+|+||+|++.||..
T Consensus 546 ~~~~Gt~~~i~lP~~ 560 (565)
T PRK10935 546 PPGGGTTVSLTFPSQ 560 (565)
T ss_pred CCCCcEEEEEEECCC
Confidence 999999999999975
No 50
>PRK13559 hypothetical protein; Provisional
Probab=99.64 E-value=1.3e-14 Score=148.32 Aligned_cols=187 Identities=13% Similarity=0.097 Sum_probs=123.0
Q ss_pred hHHHHHHHHHHHHHhhchhHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhhHHHHHHHHHHhhccccccCCCCC
Q psy14548 102 TLDKFCKALVKIRNRHSDVVQTMAQGVMELKDSHDVDHQTENSIQYFLDRFYMSRISIRMLINQHTLLFGDELTRGDSSL 181 (482)
Q Consensus 102 ~~~~f~~~l~~~l~~~~~~i~~la~g~~e~~~~~~~~~~~~e~~~~~Ld~i~~sri~~r~Li~~~l~L~~~~~~~~~~~~ 181 (482)
..++|...++|.+++++++|..++. +.... ++...+++.+......+..++++++... .
T Consensus 169 ~~~~l~~~l~H~~~n~L~~i~~~~~----l~~~~-------~~~~~~~~~i~~~~~~l~~~~~~ll~~~---------~- 227 (361)
T PRK13559 169 HERRLAREVDHRSKNVFAVVDSIVR----LTGRA-------DDPSLYAAAIQERVQALARAHETLLDER---------G- 227 (361)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHH----hhccC-------CCHHHHHHHHHHHHHHHHHHHHHHhccC---------C-
Confidence 4567899999999999988865554 32211 1223345554433222222333332221 1
Q ss_pred CcccccCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEeeccCCCCCeEEEech-hHHHHHHHHHHHHHHHHhhhcC
Q psy14548 182 RHIGCIDPQCDLIGVVKDAYENARFLCEQYYLSSPELKVTEHNEYEKGEPVRIIYVP-SHLYHMLFELFKNSMRATVEHH 260 (482)
Q Consensus 182 ~~ig~i~~~~~l~~li~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~-~~L~~il~NLl~NAik~t~~~~ 260 (482)
...+++.++++.+++.+.. ....+.+. ..++.+..+. ..|.+||.||+.||+||....
T Consensus 228 ------~~~v~l~~~~~~~~~~~~~---------~~~~i~~~-----~~~~~~~~~~~~~l~~vl~nLi~NA~k~~~~~- 286 (361)
T PRK13559 228 ------WETVEVEELIRAQVAPYAP---------RATRVAFE-----GPGIRLGAASVQPLGLVLHELAVNAIKHGALS- 286 (361)
T ss_pred ------cCcccHHHHHHHHHHhhcC---------CCceEEEE-----CCCeeeCHHHHHHHHHHHHHHHHhHHHhcccc-
Confidence 2345888888887665432 13344432 1233344333 469999999999999994211
Q ss_pred CCCCCCCCEEEEE--EecCceeEEEEEEcCCCCChhhHhhhhhcccccCCCCCCCCCCCCCCCCcccCHHHHHHHHHH-h
Q psy14548 261 TDTDVLPPIEVSV--VRGKEDICVKMSDKGGGIPRSVTDMLFHYMYSTAPQPSKSDAHTVPLAGYGYGLPISRLYARY-F 337 (482)
Q Consensus 261 ~~~~~~p~I~v~~--~~~~~~~~i~V~D~G~GI~~~~~~~if~~f~~t~~~~~~~~~~~~~~~G~GLGL~i~r~~~~~-~ 337 (482)
...+.|.|.+ ...++.+.+.|.|+|+|++++. .|+|+||.|++.+++. |
T Consensus 287 ---~~~g~i~v~~~~~~~~~~~~i~v~d~G~~~~~~~-------------------------~~~g~Gl~i~~~~v~~~~ 338 (361)
T PRK13559 287 ---ADQGRISISWKPSPEGAGFRIDWQEQGGPTPPKL-------------------------AKRGFGTVIIGAMVESQL 338 (361)
T ss_pred ---CCCcEEEEEEEecCCCCeEEEEEECCCCCCCCCC-------------------------CCCCcHHHHHHHHHHHHc
Confidence 0112388888 5567789999999999977641 4789999999999987 9
Q ss_pred CCEEEEEeecCCcEEEEEEeeC
Q psy14548 338 HGDIMLLSCDGLGTDAIIYLKA 359 (482)
Q Consensus 338 gG~i~v~s~~g~Gt~f~i~lp~ 359 (482)
||++++.+. +.|++|+++||.
T Consensus 339 gG~i~~~~~-~~G~~~~l~~P~ 359 (361)
T PRK13559 339 NGQLEKTWS-DDGLLARIEIPS 359 (361)
T ss_pred CCeEEEEEc-CCeEEEEEEEeC
Confidence 999999986 679999999995
No 51
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional
Probab=99.60 E-value=5.9e-14 Score=152.35 Aligned_cols=162 Identities=16% Similarity=0.178 Sum_probs=112.1
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHhhccccccCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEE
Q psy14548 143 NSIQYFLDRFYMSRISIRMLINQHTLLFGDELTRGDSSLRHIGCIDPQCDLIGVVKDAYENARFLCEQYYLSSPELKVTE 222 (482)
Q Consensus 143 e~~~~~Ld~i~~sri~~r~Li~~~l~L~~~~~~~~~~~~~~ig~i~~~~~l~~li~~~~~~~~~l~~~~~~~~~~~~i~~ 222 (482)
++..+.++.+...-......+.+++..++. . ...+++.+.++++++.+... ....+.+
T Consensus 396 ~~~~~~l~~i~~~~~~~~~~lr~ll~~~r~-------~-------~~~~~l~~~l~~~~~~~~~~--------~~~~i~~ 453 (569)
T PRK10600 396 ESSRELLSQIRNELNASWRQLRELLTTFRL-------Q-------LTEPGLRPALEASCEEFSAR--------FGFPVKL 453 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCc-------C-------cccCCHHHHHHHHHHHHHHH--------hCCeEEE
Confidence 445556666654333323344555544421 0 12347888888877766542 1233433
Q ss_pred eeccCCCCCeEEEechhHHHHHHHHHHHHHHHHhhhcCCCCCCCCCEEEEEEecCceeEEEEEEcCCCCChhhHhhhhhc
Q psy14548 223 HNEYEKGEPVRIIYVPSHLYHMLFELFKNSMRATVEHHTDTDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVTDMLFHY 302 (482)
Q Consensus 223 ~~~~~~~~~~~v~~d~~~L~~il~NLl~NAik~t~~~~~~~~~~p~I~v~~~~~~~~~~i~V~D~G~GI~~~~~~~if~~ 302 (482)
....++ ......++.++.+++.|++.||+||+..+. |.|.+...++.+.|.|.|+|+|||++.
T Consensus 454 ~~~~~~--~~~~~~~~~~l~~il~ell~NA~kha~a~~--------i~V~~~~~~~~~~l~V~D~G~Gi~~~~------- 516 (569)
T PRK10600 454 DYQLPP--RLVPSHQAIHLLQIAREALSNALKHAQASE--------VVVTVAQNQNQVKLSVQDNGCGVPENA------- 516 (569)
T ss_pred EecCCc--ccCCHHHHHHHHHHHHHHHHHHHHhCCCCe--------EEEEEEEcCCEEEEEEEECCCCCCccc-------
Confidence 332111 111122355799999999999999985432 888888888899999999999999862
Q ss_pred ccccCCCCCCCCCCCCCCCCcccCHHHHHHHHHHhCCEEEEEeecCCcEEEEEEeeCC
Q psy14548 303 MYSTAPQPSKSDAHTVPLAGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLKAL 360 (482)
Q Consensus 303 f~~t~~~~~~~~~~~~~~~G~GLGL~i~r~~~~~~gG~i~v~s~~g~Gt~f~i~lp~~ 360 (482)
. .+.|+||+|++.+++.|||+|.+.|.+|+||+|+++||..
T Consensus 517 --~---------------~~~glGL~i~~~~~~~lgG~l~i~s~~~~Gt~v~i~lp~~ 557 (569)
T PRK10600 517 --E---------------RSNHYGLIIMRDRAQSLRGDCRVRRRESGGTEVVVTFIPE 557 (569)
T ss_pred --c---------------CCCCccHHHHHHHHHHcCCEEEEEECCCCCEEEEEEEecC
Confidence 0 3679999999999999999999999999999999999973
No 52
>PRK04184 DNA topoisomerase VI subunit B; Validated
Probab=99.55 E-value=3.7e-14 Score=148.83 Aligned_cols=120 Identities=26% Similarity=0.335 Sum_probs=95.6
Q ss_pred EEEechhHHHHHHHHHHHHHHHHhhhcCCCCCCCCCEEEEEEe---cCceeEEEEEEcCCCCChhhHhhhhhcccccCCC
Q psy14548 233 RIIYVPSHLYHMLFELFKNSMRATVEHHTDTDVLPPIEVSVVR---GKEDICVKMSDKGGGIPRSVTDMLFHYMYSTAPQ 309 (482)
Q Consensus 233 ~v~~d~~~L~~il~NLl~NAik~t~~~~~~~~~~p~I~v~~~~---~~~~~~i~V~D~G~GI~~~~~~~if~~f~~t~~~ 309 (482)
.+..+...|.+++.||++||++|+..++. .+.|.|.+.. +++.+.|.|+|||+||++++++++|++|+.+...
T Consensus 29 gf~~p~~~L~qVLkNLIeNAIDa~~~~gi----lp~I~I~I~~~~~~~~~~~I~V~DNG~GIp~e~l~~iF~~f~~~SK~ 104 (535)
T PRK04184 29 GFDNPARALYTTVKELVDNSLDACEEAGI----LPDIKIEIKRVDEGKDHYRVTVEDNGPGIPPEEIPKVFGKLLYGSKF 104 (535)
T ss_pred eecCCHHHHHHHHHHHHHHHHHHhhhcCC----CceEEEEEEEccCCCcEEEEEEEcCCCCCCHHHHHHHhhhhhccccc
Confidence 35566788999999999999999976542 2347887765 3557899999999999999999999998765321
Q ss_pred CCCCCCCCCCCCCcccCHHHHHHHHHHhCCE-EEEEeecCCcE-EEEEEeeCC
Q psy14548 310 PSKSDAHTVPLAGYGYGLPISRLYARYFHGD-IMLLSCDGLGT-DAIIYLKAL 360 (482)
Q Consensus 310 ~~~~~~~~~~~~G~GLGL~i~r~~~~~~gG~-i~v~s~~g~Gt-~f~i~lp~~ 360 (482)
. ......+++|+||++|+.+++.|+|. +.+.|..+.|+ .|++.|+..
T Consensus 105 ~----~~~~s~G~~GLGLsiv~~isq~~~G~~I~V~S~~~~g~~~~~~~l~id 153 (535)
T PRK04184 105 H----NLRQSRGQQGIGISAAVLYAQMTTGKPVRVISSTGGSKKAYYFELKID 153 (535)
T ss_pred c----ccccCCCCCCcchHHHHHHHHHhcCCcEEEEEecCCCceEEEEEEEec
Confidence 1 00234477999999999999999987 99999998887 788888753
No 53
>smart00387 HATPase_c Histidine kinase-like ATPases. Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.
Probab=99.52 E-value=2.6e-13 Score=112.59 Aligned_cols=110 Identities=27% Similarity=0.405 Sum_probs=94.7
Q ss_pred echhHHHHHHHHHHHHHHHHhhhcCCCCCCCCCEEEEEEecCceeEEEEEEcCCCCChhhHhhhhhcccccCCCCCCCCC
Q psy14548 236 YVPSHLYHMLFELFKNSMRATVEHHTDTDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVTDMLFHYMYSTAPQPSKSDA 315 (482)
Q Consensus 236 ~d~~~L~~il~NLl~NAik~t~~~~~~~~~~p~I~v~~~~~~~~~~i~V~D~G~GI~~~~~~~if~~f~~t~~~~~~~~~ 315 (482)
+|+..|.+++.|++.||+++....+ .|.|.+...+..+.|.|.|+|.|++++..+++|.++++...
T Consensus 1 ~~~~~l~~~~~~l~~n~~~~~~~~~-------~v~i~~~~~~~~~~i~i~d~g~g~~~~~~~~~~~~~~~~~~------- 66 (111)
T smart00387 1 GDPDRLRQVLSNLLDNAIKYTPEGG-------RITVTLERDGDHLEITVEDNGPGIPPEDLEKIFEPFFRTDG------- 66 (111)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCC-------eEEEEEEEcCCEEEEEEEeCCCCCCHHHHHHHhcCeEECCC-------
Confidence 3678899999999999999986633 28999988888999999999999999999999999887431
Q ss_pred CCCCCCCcccCHHHHHHHHHHhCCEEEEEeecCCcEEEEEEeeC
Q psy14548 316 HTVPLAGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLKA 359 (482)
Q Consensus 316 ~~~~~~G~GLGL~i~r~~~~~~gG~i~v~s~~g~Gt~f~i~lp~ 359 (482)
......+.|+||++|+.+++.|+|++.+.+..+.|+.|.+.+|.
T Consensus 67 ~~~~~~~~g~gl~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~ 110 (111)
T smart00387 67 RSRKIGGTGLGLSIVKKLVELHGGEISVESEPGGGTTFTITLPL 110 (111)
T ss_pred CCCCCCcccccHHHHHHHHHHcCCEEEEEecCCCcEEEEEEeeC
Confidence 11223578999999999999999999998887899999999985
No 54
>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]
Probab=99.48 E-value=1.5e-12 Score=141.87 Aligned_cols=151 Identities=24% Similarity=0.279 Sum_probs=117.8
Q ss_pred CHHHHHHHHHHHHHHHHHHhhcCCCCceEEEeeccCCCCCeEEEechhHHHHH---HHHHHHHHHHHhhhcCC-----CC
Q psy14548 192 DLIGVVKDAYENARFLCEQYYLSSPELKVTEHNEYEKGEPVRIIYVPSHLYHM---LFELFKNSMRATVEHHT-----DT 263 (482)
Q Consensus 192 ~l~~li~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~L~~i---l~NLl~NAik~t~~~~~-----~~ 263 (482)
.+..++...-..++.++..+ ++++++.. .+. ....|+.-|+++ |.+|+.||+.|..+... .+
T Consensus 391 P~~~vf~RfpR~VRdla~~l-----gK~V~L~i---eG~--~telDksIlE~l~dPL~HLvRNAvDHGIE~pE~R~a~GK 460 (716)
T COG0643 391 PFEQVFSRFPRMVRDLARKL-----GKQVELVI---EGE--DTELDKSILERLGDPLTHLVRNAVDHGIETPEERRAAGK 460 (716)
T ss_pred eHHHHHhhccHHHHHHHHHh-----CCeeEEEE---ecC--CeeehHHHHHHhcccHHHHHhcchhccCCCHHHHHHcCC
Confidence 66777777777777776653 33343333 122 356788777776 78999999999865432 12
Q ss_pred CCCCCEEEEEEecCceeEEEEEEcCCCCChhh------------------------HhhhhhcccccCCCCCCCCCCCCC
Q psy14548 264 DVLPPIEVSVVRGKEDICVKMSDKGGGIPRSV------------------------TDMLFHYMYSTAPQPSKSDAHTVP 319 (482)
Q Consensus 264 ~~~p~I~v~~~~~~~~~~i~V~D~G~GI~~~~------------------------~~~if~~f~~t~~~~~~~~~~~~~ 319 (482)
...+.|++++...++.+.|+|+|+|.||+++. ..-||.|.|+|+. ....
T Consensus 461 p~~G~I~L~A~~~gn~ivIev~DDG~Gid~ekI~~KAiErGli~~~~a~~lSd~Ei~~LIF~PGFSTa~-------~Vtd 533 (716)
T COG0643 461 PEEGTITLSAYHEGNNIVIEVSDDGAGIDREKIREKAIERGLITEEEAETLSDEEILNLIFAPGFSTAE-------QVTD 533 (716)
T ss_pred CCcceEEEEEEcCCCeEEEEEeeCCCCCCHHHHHHHHHHcCCCChHHhccCCHHHHHHHHhcCCCCcch-------hhhc
Confidence 34556999999999999999999999996653 4567999888875 3355
Q ss_pred CCCcccCHHHHHHHHHHhCCEEEEEeecCCcEEEEEEeeC
Q psy14548 320 LAGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLKA 359 (482)
Q Consensus 320 ~~G~GLGL~i~r~~~~~~gG~i~v~s~~g~Gt~f~i~lp~ 359 (482)
.+|.|.||=+||.-++.+||+|.+.|.+|+||+|+++||.
T Consensus 534 vSGRGVGMDVVk~~I~~LgG~I~V~S~~G~GT~Fti~LPL 573 (716)
T COG0643 534 VSGRGVGMDVVKTNIEQLGGSISVSSEPGKGTTFTIRLPL 573 (716)
T ss_pred ccCCccCHHHHHHHHHHcCCEEEEEecCCCCeEEEEecCc
Confidence 6899999999999999999999999999999999999996
No 55
>TIGR01052 top6b DNA topoisomerase VI, B subunit. This model describes DNA topoisomerase VI, an archaeal type II DNA topoisomerase (DNA gyrase).
Probab=99.40 E-value=2.2e-12 Score=134.16 Aligned_cols=113 Identities=24% Similarity=0.307 Sum_probs=90.1
Q ss_pred eEEEechhHHHHHHHHHHHHHHHHhhhcCCCCCCCCCEEEEEEecC-ceeEEEEEEcCCCCChhhHhhhhhcccccCCCC
Q psy14548 232 VRIIYVPSHLYHMLFELFKNSMRATVEHHTDTDVLPPIEVSVVRGK-EDICVKMSDKGGGIPRSVTDMLFHYMYSTAPQP 310 (482)
Q Consensus 232 ~~v~~d~~~L~~il~NLl~NAik~t~~~~~~~~~~p~I~v~~~~~~-~~~~i~V~D~G~GI~~~~~~~if~~f~~t~~~~ 310 (482)
+.+.++...|.+++.||++||++|+...+. .|.|.|.+...+ +.+.|.|.|||+||++++++++|++|++++...
T Consensus 20 ~Gf~~~~~~L~~VlkELVeNAIDA~~~~g~----~p~I~V~i~~~g~~~~~I~V~DNG~GIp~edl~~iF~rf~~tsK~~ 95 (488)
T TIGR01052 20 LGYSGKIRSLTTVIHELVTNSLDACEEAGI----LPDIKVEIEKIGKDHYKVTVEDNGPGIPEEYIPKVFGKMLAGSKFH 95 (488)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHhhccCC----CceEEEEEEECCCceEEEEEEECCCCCCHHHHHhhhhhccccCccc
Confidence 346788899999999999999999865431 345888887643 567899999999999999999999988765321
Q ss_pred CCCCCCCCCCCCcccCHHHHHHHHHHhCCE-EEEEeecCCcEEE
Q psy14548 311 SKSDAHTVPLAGYGYGLPISRLYARYFHGD-IMLLSCDGLGTDA 353 (482)
Q Consensus 311 ~~~~~~~~~~~G~GLGL~i~r~~~~~~gG~-i~v~s~~g~Gt~f 353 (482)
......++.|+||++++.+++.|+|+ +.+.|..+ |..|
T Consensus 96 ----~~~~s~G~~GlGLs~~~~isq~~~G~~i~V~S~~~-g~~~ 134 (488)
T TIGR01052 96 ----RIIQSRGQQGIGISGAVLYSQMTTGKPVKVISSTG-GEIY 134 (488)
T ss_pred ----cccccCCCccEehhHHHHHHHHcCCceEEEEEecC-CceE
Confidence 02234578999999999999999998 89988775 5544
No 56
>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins
Probab=99.38 E-value=6.9e-12 Score=102.30 Aligned_cols=103 Identities=28% Similarity=0.411 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCCCCCCEEEEEEecCceeEEEEEEcCCCCChhhHhhhhhcccccCCCCCCCCCCCCCC
Q psy14548 241 LYHMLFELFKNSMRATVEHHTDTDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVTDMLFHYMYSTAPQPSKSDAHTVPL 320 (482)
Q Consensus 241 L~~il~NLl~NAik~t~~~~~~~~~~p~I~v~~~~~~~~~~i~V~D~G~GI~~~~~~~if~~f~~t~~~~~~~~~~~~~~ 320 (482)
|.+++.+++.||++|....+ ..|.|.+...+..+.|.|.|+|.|+++..+++.|.++.... .....
T Consensus 1 l~~~~~~ll~Na~~~~~~~~------~~v~i~~~~~~~~~~v~i~d~g~g~~~~~~~~~~~~~~~~~--------~~~~~ 66 (103)
T cd00075 1 LQQVLLNLLSNAIKHTPEGG------GRITISVERDGDHLEIRVEDNGPGIPEEDLERIFERFSDGS--------RSRKG 66 (103)
T ss_pred CHHHHHHHHHHHHHhCcCCC------CeEEEEEEecCCEEEEEEEeCCCCCCHHHHHHHhhhhhcCC--------CCCCC
Confidence 46889999999999986411 22888888888889999999999999999999998871110 11233
Q ss_pred CCcccCHHHHHHHHHHhCCEEEEEeecCCcEEEEEEe
Q psy14548 321 AGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYL 357 (482)
Q Consensus 321 ~G~GLGL~i~r~~~~~~gG~i~v~s~~g~Gt~f~i~l 357 (482)
.+.|+||++++.+++.|||++.+.+..+.|+.|.+.+
T Consensus 67 ~~~g~gl~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~ 103 (103)
T cd00075 67 GGTGLGLSIVKKLVELHGGRIEVESEPGGGTTFTITL 103 (103)
T ss_pred CccccCHHHHHHHHHHcCCEEEEEeCCCCcEEEEEEC
Confidence 5889999999999999999999998877899988764
No 57
>PRK14868 DNA topoisomerase VI subunit B; Provisional
Probab=99.35 E-value=6.6e-12 Score=134.59 Aligned_cols=109 Identities=18% Similarity=0.155 Sum_probs=81.0
Q ss_pred EEEechhHHHHHHHHHHHHHHHHhhhcCCCCCCCCCEEEEEEecCceeEEEEEEcCCCCChhhHhhhhhcccccCCCCCC
Q psy14548 233 RIIYVPSHLYHMLFELFKNSMRATVEHHTDTDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVTDMLFHYMYSTAPQPSK 312 (482)
Q Consensus 233 ~v~~d~~~L~~il~NLl~NAik~t~~~~~~~~~~p~I~v~~~~~~~~~~i~V~D~G~GI~~~~~~~if~~f~~t~~~~~~ 312 (482)
.+..|...|.+++.|||+||++|+..++. .|.|.|.+...+..+.|.|.|||+||++++++++|++|++++....
T Consensus 39 gfD~d~r~L~tVLkNLIeNALDAs~~~gi----lp~I~V~Ie~~g~~v~I~VeDNG~GIp~EdLp~IFerf~~tSKf~~- 113 (795)
T PRK14868 39 GFDSGARGLVTAVKEAVDNALDATEEAGI----LPDIYVEIEEVGDYYRLVVEDNGPGITKEQIPKVFGKLLYGSRFHA- 113 (795)
T ss_pred eccCCHHHHHHHHHHHHHHHHHhCcccCC----CceEEEEEEECCCEEEEEEEEcCCCCCHHHHHHHhhhhcccccccc-
Confidence 34556778999999999999999866542 3458888888888899999999999999999999999986542110
Q ss_pred CCCCCCCCCCcccCHHHHHHHHHH-hCCEEEEEeecCC
Q psy14548 313 SDAHTVPLAGYGYGLPISRLYARY-FHGDIMLLSCDGL 349 (482)
Q Consensus 313 ~~~~~~~~~G~GLGL~i~r~~~~~-~gG~i~v~s~~g~ 349 (482)
.....++.|+||+++..+.+. +||.+.+.|..+.
T Consensus 114 ---~~~srG~rG~GLglai~~sqlt~GgpI~I~S~~~~ 148 (795)
T PRK14868 114 ---REQSRGQQGIGISAAVLYSQLTSGKPAKITSRTQG 148 (795)
T ss_pred ---cccCCCCCceehHHHHHHHHHcCCCcEEEEeCCCC
Confidence 112234455665555555554 6788999998743
No 58
>TIGR01925 spIIAB anti-sigma F factor. This model describes the SpoIIAB anti-sigma F factor. Sigma F regulates spore development in B subtilis. SpoIIAB binds to sigma F, preventing formation of the transcription complex at the promoter. SpoIIAA (anti-anti-sigma F factor) binds to SpoIIAB to inhibit association with sigma F, however SpoIIAB can phosphorylate SpoIIAA, causing disassociation of the SpoIIAA/B complex. The SpoIIE phosphatase dephosphorylates SpoIIAA.
Probab=99.31 E-value=2e-11 Score=107.31 Aligned_cols=102 Identities=19% Similarity=0.246 Sum_probs=80.9
Q ss_pred echhHHHHHHHHHHHHHHHHhhhcCCCCCCCCCEEEEEEecCceeEEEEEEcCCCCChhhHhhhhhcccccCCCCCCCCC
Q psy14548 236 YVPSHLYHMLFELFKNSMRATVEHHTDTDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVTDMLFHYMYSTAPQPSKSDA 315 (482)
Q Consensus 236 ~d~~~L~~il~NLl~NAik~t~~~~~~~~~~p~I~v~~~~~~~~~~i~V~D~G~GI~~~~~~~if~~f~~t~~~~~~~~~ 315 (482)
.+...+..++.|++.||++|+.... ....|.|.+...++.+.+.|.|+|.||++ .+++|++|+++..
T Consensus 35 ~~~~~l~~~l~eli~Nai~h~~~~~----~~~~I~v~~~~~~~~~~i~I~D~G~gi~~--~~~~~~~~~~~~~------- 101 (137)
T TIGR01925 35 EELTDIKTAVSEAVTNAIIHGYEEN----CEGVVYISATIEDHEVYITVRDEGIGIEN--LEEAREPLYTSKP------- 101 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCC----CCcEEEEEEEEeCCEEEEEEEEcCCCcCc--hhHhhCCCcccCC-------
Confidence 3456789999999999999863311 12348999888888999999999999983 6789999997432
Q ss_pred CCCCCCCcccCHHHHHHHHHHhCCEEEEEeecCCcEEEEEEe
Q psy14548 316 HTVPLAGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYL 357 (482)
Q Consensus 316 ~~~~~~G~GLGL~i~r~~~~~~gG~i~v~s~~g~Gt~f~i~l 357 (482)
...+.|+||++++. +.+++.+.+.++.|++|+++.
T Consensus 102 ---~~~~~GlGL~lv~~----~~~~l~~~~~~~~Gt~v~i~~ 136 (137)
T TIGR01925 102 ---ELERSGMGFTVMEN----FMDDVSVDSEKEKGTKIIMKK 136 (137)
T ss_pred ---CCCCCcccHHHHHH----hCCcEEEEECCCCCeEEEEEe
Confidence 22578999999876 457899999889999998763
No 59
>PRK14867 DNA topoisomerase VI subunit B; Provisional
Probab=99.31 E-value=1.9e-11 Score=130.82 Aligned_cols=116 Identities=21% Similarity=0.258 Sum_probs=91.9
Q ss_pred hhHHHHHHHHHHHHHHHHhhhcCCCCCCCCCEEEEEEec-CceeEEEEEEcCCCCChhhHhhhhhcccccCCCCCCCCCC
Q psy14548 238 PSHLYHMLFELFKNSMRATVEHHTDTDVLPPIEVSVVRG-KEDICVKMSDKGGGIPRSVTDMLFHYMYSTAPQPSKSDAH 316 (482)
Q Consensus 238 ~~~L~~il~NLl~NAik~t~~~~~~~~~~p~I~v~~~~~-~~~~~i~V~D~G~GI~~~~~~~if~~f~~t~~~~~~~~~~ 316 (482)
...|.+++.||++||++|+...+. .+.|.|.+... .+.+.|.|.|||+|||++.++++|++|++++.-. ..
T Consensus 34 ~r~L~~VVkELVeNAIDA~~~~g~----~p~I~V~I~~~g~~~~~I~V~DNG~GIp~e~l~~iFerF~atSK~~----~~ 105 (659)
T PRK14867 34 LRSMTTIIHELVTNSLDACEEAEI----LPDIKVEIEKLGSDHYKVAVEDNGPGIPPEFVPKVFGKMLAGSKMH----RL 105 (659)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCC----CceEEEEEEECCCcEEEEEEEeeCeeCCHHHHhhhhccccccCccc----ce
Confidence 344559999999999999876431 34588888764 4568999999999999999999999988764321 01
Q ss_pred CCCCCCcccCHHHHHHHHHHh-CCEEEEEeecCCcEEEEEEeeCCC
Q psy14548 317 TVPLAGYGYGLPISRLYARYF-HGDIMLLSCDGLGTDAIIYLKALS 361 (482)
Q Consensus 317 ~~~~~G~GLGL~i~r~~~~~~-gG~i~v~s~~g~Gt~f~i~lp~~~ 361 (482)
....++.|+||+++..+++.+ ||.+.+.|..+.|+.|++.+|...
T Consensus 106 ~qS~G~rG~GLa~a~~vsql~~G~pI~I~S~~g~G~~f~i~L~i~i 151 (659)
T PRK14867 106 IQSRGQQGIGAAGVLLFSQITTGKPLKITTSTGDGKIHEMEIKMSV 151 (659)
T ss_pred eccCCCCcccHHHHHHHHHHhcCCcEEEEEEcCCCEEEEEEEEEEe
Confidence 244578999999999999876 556899999999999999988743
No 60
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms]
Probab=99.29 E-value=6e-10 Score=114.29 Aligned_cols=125 Identities=20% Similarity=0.315 Sum_probs=99.6
Q ss_pred CHHHHHHHHHHHHHHHHHHhhcCCCCceEEEeeccCCCCCeEEEec-hhHHHHHHHHHHHHHHHHhhhcCCCCCCCCCEE
Q psy14548 192 DLIGVVKDAYENARFLCEQYYLSSPELKVTEHNEYEKGEPVRIIYV-PSHLYHMLFELFKNSMRATVEHHTDTDVLPPIE 270 (482)
Q Consensus 192 ~l~~li~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d-~~~L~~il~NLl~NAik~t~~~~~~~~~~p~I~ 270 (482)
++...++++++.+.. -.++.+++.+..++. .+..+ ..|+-||+.+-+.||+||+.... |.
T Consensus 443 ~L~~AL~~~~~~f~~--------qtg~~~~l~~qlp~~---~lpa~qqvHlLqIvREAlsNa~KHa~As~--------i~ 503 (574)
T COG3850 443 ELPPALEQMLAEFSN--------QTGITVTLDYQLPPR---ALPAHQQVHLLQIVREALSNAIKHAQASE--------IK 503 (574)
T ss_pred chHHHHHHHHHHHHh--------ccCCeEEEeccCCCC---CCCHHHHHHHHHHHHHHHHHHHHhcccCe--------EE
Confidence 667777777666653 346667666644332 23333 45788999999999999996654 99
Q ss_pred EEEEecCceeEEEEEEcCCCCChhhHhhhhhcccccCCCCCCCCCCCCCCCCcccCHHHHHHHHHHhCCEEEEEeecCCc
Q psy14548 271 VSVVRGKEDICVKMSDKGGGIPRSVTDMLFHYMYSTAPQPSKSDAHTVPLAGYGYGLPISRLYARYFHGDIMLLSCDGLG 350 (482)
Q Consensus 271 v~~~~~~~~~~i~V~D~G~GI~~~~~~~if~~f~~t~~~~~~~~~~~~~~~G~GLGL~i~r~~~~~~gG~i~v~s~~g~G 350 (482)
|++...++.+.+.|.|||+|||+..- .+| -+||.|.+.-++..+|++.+++.+|+|
T Consensus 504 V~~~~~~g~~~~~VeDnG~Gi~~~~e-----------------------~~g-HyGL~IM~ERA~~L~~~L~i~~~~~gG 559 (574)
T COG3850 504 VTVSQNDGQVTLTVEDNGVGIDEAAE-----------------------PSG-HYGLNIMRERAQRLGGQLRIRRREGGG 559 (574)
T ss_pred EEEEecCCeEEEEEeeCCcCCCCccC-----------------------CCC-CcchHHHHHHHHHhcCeEEEeecCCCC
Confidence 99998889999999999999998620 035 799999999999999999999999999
Q ss_pred EEEEEEeeC
Q psy14548 351 TDAIIYLKA 359 (482)
Q Consensus 351 t~f~i~lp~ 359 (482)
|.+.+++|-
T Consensus 560 T~V~ltf~~ 568 (574)
T COG3850 560 TEVSLTFPP 568 (574)
T ss_pred eEEEEEecc
Confidence 999999984
No 61
>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=99.26 E-value=8.8e-10 Score=113.15 Aligned_cols=91 Identities=23% Similarity=0.371 Sum_probs=82.0
Q ss_pred echhHHHHHHHHHHHHHHHHhhhcCCCCCCCCCEEEEEEecCceeEEEEEEcCCCCChhhHhhhhhcccccCCCCCCCCC
Q psy14548 236 YVPSHLYHMLFELFKNSMRATVEHHTDTDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVTDMLFHYMYSTAPQPSKSDA 315 (482)
Q Consensus 236 ~d~~~L~~il~NLl~NAik~t~~~~~~~~~~p~I~v~~~~~~~~~~i~V~D~G~GI~~~~~~~if~~f~~t~~~~~~~~~ 315 (482)
.....+.+++.+.+.||+||+.... +.|++...++.+.++|.|||.|++++.
T Consensus 275 ~~e~~l~rivQEaltN~~rHa~A~~--------v~V~l~~~~~~l~l~V~DnG~Gf~~~~-------------------- 326 (365)
T COG4585 275 EAEDALFRIVQEALTNAIRHAQATE--------VRVTLERTDDELRLEVIDNGVGFDPDK-------------------- 326 (365)
T ss_pred hHHHHHHHHHHHHHHHHHhccCCce--------EEEEEEEcCCEEEEEEEECCcCCCccc--------------------
Confidence 4577899999999999999997655 999999999999999999999998863
Q ss_pred CCCCCCCcccCHHHHHHHHHHhCCEEEEEeecCCcEEEEEEeeC
Q psy14548 316 HTVPLAGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLKA 359 (482)
Q Consensus 316 ~~~~~~G~GLGL~i~r~~~~~~gG~i~v~s~~g~Gt~f~i~lp~ 359 (482)
.+.|+||.-.|.-++..||++.+.|.+|.||++.+.+|.
T Consensus 327 -----~~~~~GL~~mreRv~~lgG~l~i~S~~g~Gt~i~i~lPl 365 (365)
T COG4585 327 -----EGGGFGLLGMRERVEALGGTLTIDSAPGQGTTVTITLPL 365 (365)
T ss_pred -----cCCCcchhhHHHHHHHcCCEEEEEecCCCceEEEEecCC
Confidence 126899999999999999999999999999999999984
No 62
>PRK03660 anti-sigma F factor; Provisional
Probab=99.23 E-value=1.8e-10 Score=102.29 Aligned_cols=106 Identities=19% Similarity=0.252 Sum_probs=83.6
Q ss_pred echhHHHHHHHHHHHHHHHHhhhcCCCCCCCCCEEEEEEecCceeEEEEEEcCCCCChhhHhhhhhcccccCCCCCCCCC
Q psy14548 236 YVPSHLYHMLFELFKNSMRATVEHHTDTDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVTDMLFHYMYSTAPQPSKSDA 315 (482)
Q Consensus 236 ~d~~~L~~il~NLl~NAik~t~~~~~~~~~~p~I~v~~~~~~~~~~i~V~D~G~GI~~~~~~~if~~f~~t~~~~~~~~~ 315 (482)
.+...+.+++.|++.||++|+..... ...|.|.+...++.+.+.|.|+|.||++ ....|++|+++..
T Consensus 35 ~~~~~l~~~l~eli~Nai~h~~~~~~----~~~i~i~~~~~~~~l~i~I~D~G~g~~~--~~~~~~~~~~~~~------- 101 (146)
T PRK03660 35 EELTEIKTAVSEAVTNAIIHGYENNP----DGVVYIEVEIEEEELEITVRDEGKGIED--IEEAMQPLYTTKP------- 101 (146)
T ss_pred HHHHhHHHHHHHHHHHHHHHhcCCCC----CCEEEEEEEECCCEEEEEEEEccCCCCh--HHHhhCCCcccCC-------
Confidence 34577899999999999999754221 1348888888888999999999999986 5688999987432
Q ss_pred CCCCCCCcccCHHHHHHHHHHhCCEEEEEeecCCcEEEEEEeeCCC
Q psy14548 316 HTVPLAGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLKALS 361 (482)
Q Consensus 316 ~~~~~~G~GLGL~i~r~~~~~~gG~i~v~s~~g~Gt~f~i~lp~~~ 361 (482)
...+.|+||++++. +.+.+.+.+.++.||+|+++++...
T Consensus 102 ---~~~~~GlGL~i~~~----~~~~i~~~~~~~~Gt~~~i~~~~~~ 140 (146)
T PRK03660 102 ---ELERSGMGFTVMES----FMDEVEVESEPGKGTTVRMKKYLKK 140 (146)
T ss_pred ---CCCCccccHHHHHH----hCCeEEEEecCCCcEEEEEEEEecc
Confidence 11468999998875 5668999998899999999987653
No 63
>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair]
Probab=99.16 E-value=2e-10 Score=115.25 Aligned_cols=168 Identities=23% Similarity=0.214 Sum_probs=115.5
Q ss_pred EechhHHHHHHHHHHHHHHHHhhhcCCCCCCCCCEEEEEEec-CceeEEEEEEcCCCCChhhHhhhhhcccccCCCCCCC
Q psy14548 235 IYVPSHLYHMLFELFKNSMRATVEHHTDTDVLPPIEVSVVRG-KEDICVKMSDKGGGIPRSVTDMLFHYMYSTAPQPSKS 313 (482)
Q Consensus 235 ~~d~~~L~~il~NLl~NAik~t~~~~~~~~~~p~I~v~~~~~-~~~~~i~V~D~G~GI~~~~~~~if~~f~~t~~~~~~~ 313 (482)
.+-...|.+++.+|+.||+.++.+.+ .+|.|.|.+... .+++.+.|.|||+|||+++++++|..+.-++...
T Consensus 31 ~~p~RsL~~tv~ElV~NSLDA~eeaG----ILPdI~v~I~~~~~d~y~v~veDNGpGIP~e~IPkvFGk~LygSKfh--- 103 (538)
T COG1389 31 DGPIRSLTTTVHELVTNSLDACEEAG----ILPDIKVEIERIGKDHYKVIVEDNGPGIPEEQIPKVFGKMLYGSKFH--- 103 (538)
T ss_pred CCchhHHHHHHHHHHhcchhhHHhcC----CCCceEEEEEecCCceEEEEEecCCCCCChhHhHHHHHHHhccchhh---
Confidence 34456799999999999999998876 478899999876 6889999999999999999999998765433210
Q ss_pred CCCCCCCCCcccCHHHHHHHHHHhCCE-EEEEeecCC-cEEEEEEeeCCCCcccccccccccc-----cccccccC-CCC
Q psy14548 314 DAHTVPLAGYGYGLPISRLYARYFHGD-IMLLSCDGL-GTDAIIYLKALSNEANELLPIFNKT-----SSKFYRAT-IPT 385 (482)
Q Consensus 314 ~~~~~~~~G~GLGL~i~r~~~~~~gG~-i~v~s~~g~-Gt~f~i~lp~~~~~~~e~~~~~~~~-----~~~~~~~~-~~~ 385 (482)
-..++.+..|||++.|-.|.+.+-|. +.|.|..+. ++...+.|... .+.+|+.-+.... .|+.-.+. .-.
T Consensus 104 -~~~QsRGqqGiGis~avLysQmTtGkPv~V~s~T~~s~~~~~~~l~id-~~kNEp~Iv~r~~~~~~~~~hGT~Vel~~~ 181 (538)
T COG1389 104 -RNIQSRGQQGIGISAAVLYSQMTTGKPVRVISSTGDSGTAYEYELKID-VQKNEPEIVERGEVENPGGWHGTRVELELK 181 (538)
T ss_pred -hhhhccccccccHHHHHHHHHhcCCCceEEEecCCCCcceEEEEEEec-CCCCcchhhhcccccCCCCCCceEEEEEec
Confidence 13455678899999999999999987 777776654 66666666543 3455655432211 11111111 012
Q ss_pred CCCcccccc-cccccCCcccccCCCCC
Q psy14548 386 GDWSSTQSA-CMEHRHPTISQSKTSSK 411 (482)
Q Consensus 386 ~~~~~~~~~-~~~~~~~t~~~~~~~~~ 411 (482)
+.|....+. .-+|...|+..+|.|--
T Consensus 182 ~~~~~~~~qgi~eYlkrtaiinPhA~I 208 (538)
T COG1389 182 GVWYRAKRQGIYEYLKRTAIINPHARI 208 (538)
T ss_pred ccchhhcccCHHHHHHHHhhcCCceEE
Confidence 445444444 33777777777776543
No 64
>COG3920 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=99.09 E-value=5.1e-08 Score=92.71 Aligned_cols=133 Identities=16% Similarity=0.185 Sum_probs=95.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEeeccCCCCCeEEEec-hhHHHHHHHHHHHHHHHHhhhcCCCCCCCCCE
Q psy14548 191 CDLIGVVKDAYENARFLCEQYYLSSPELKVTEHNEYEKGEPVRIIYV-PSHLYHMLFELFKNSMRATVEHHTDTDVLPPI 269 (482)
Q Consensus 191 ~~l~~li~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d-~~~L~~il~NLl~NAik~t~~~~~~~~~~p~I 269 (482)
.+...+++.+...+...+ ....+.+.... ++++.+..| ...|.-|+.+|+.||+||.-.+.. .+.|
T Consensus 81 ~~~~~~~~~L~~~l~~~~-----~~~~~~~~~~~----~~~~~l~~d~A~~Lgliv~EL~tNa~Khaf~~~~----~G~I 147 (221)
T COG3920 81 WDFASYLELLASNLFPSY-----GGKDIRLILDS----GPNVFLDPDTAVPLGLIVHELVTNALKHAFLSRP----GGEI 147 (221)
T ss_pred EcHHHHHHHHHHHHHHhc-----CCCCceEEEec----CCceEECchhhHHHHHHHHHHHHHHHHhcCCCCC----CCEE
Confidence 377888887777766532 23334443321 223555555 445889999999999999865422 2338
Q ss_pred EEEEEecCce--eEEEEEEcCCCCChhhHhhhhhcccccCCCCCCCCCCCCCCCCcccCHHHHHHHH-HHhCCEEEEEee
Q psy14548 270 EVSVVRGKED--ICVKMSDKGGGIPRSVTDMLFHYMYSTAPQPSKSDAHTVPLAGYGYGLPISRLYA-RYFHGDIMLLSC 346 (482)
Q Consensus 270 ~v~~~~~~~~--~~i~V~D~G~GI~~~~~~~if~~f~~t~~~~~~~~~~~~~~~G~GLGL~i~r~~~-~~~gG~i~v~s~ 346 (482)
.|++...++. ..+.|+|+|.|+|.+. ++ ...|+|+.+++.++ +..||.+...+.
T Consensus 148 ~I~~~~~~~~~~~~l~v~deg~G~~~~~------~~-----------------~~~g~G~~Lv~~lv~~q~~g~~~~~~~ 204 (221)
T COG3920 148 RITLSREGDGGRFLLTVWDEGGGPPVEA------PL-----------------SRGGFGLQLVERLVPEQLGGELEDERP 204 (221)
T ss_pred EEEEEEcCCCCeEEEEEEECCCCCCCCC------CC-----------------CCCCcHHHHHHHHHHHHcCCeEEEEcC
Confidence 8998877664 8999999999999862 11 25689999999999 899999987653
Q ss_pred cCCcEEEEEEeeCCC
Q psy14548 347 DGLGTDAIIYLKALS 361 (482)
Q Consensus 347 ~g~Gt~f~i~lp~~~ 361 (482)
.||.|.+.+|...
T Consensus 205 --~Gt~~~i~~~~~~ 217 (221)
T COG3920 205 --DGTEFRLRFPLSE 217 (221)
T ss_pred --CCEEEEEEEeccc
Confidence 4999999999753
No 65
>PRK04069 serine-protein kinase RsbW; Provisional
Probab=99.06 E-value=2.7e-09 Score=96.61 Aligned_cols=105 Identities=10% Similarity=0.061 Sum_probs=81.0
Q ss_pred chhHHHHHHHHHHHHHHHHhhhcCCCCCCCCCEEEEEEecCceeEEEEEEcCCCCChhhHhhhhhcccccCCCCCCCCCC
Q psy14548 237 VPSHLYHMLFELFKNSMRATVEHHTDTDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVTDMLFHYMYSTAPQPSKSDAH 316 (482)
Q Consensus 237 d~~~L~~il~NLl~NAik~t~~~~~~~~~~p~I~v~~~~~~~~~~i~V~D~G~GI~~~~~~~if~~f~~t~~~~~~~~~~ 316 (482)
+...+..++.+++.||++|+..+. ...+|.|++...++.+.|.|+|+|.||+++.++..|.+|++..+.
T Consensus 39 ~~~~l~lav~Ea~~Nai~Hg~~~~----~~~~I~I~~~~~~~~l~i~V~D~G~g~d~~~~~~~~~p~~~~~~~------- 107 (161)
T PRK04069 39 DIEDMKIAVSEACTNAVQHAYKED----EVGEIHIRFEIYEDRLEIVVADNGVSFDYETLKSKLGPYDISKPI------- 107 (161)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCC----CCCeEEEEEEEECCEEEEEEEECCcCCChHHhccccCCCCCCCcc-------
Confidence 346688999999999999986532 123488888888899999999999999999888889888764321
Q ss_pred CCCCCCcccCHHHHHHHHHHhCCEEEEEeecCCcEEEEEEeeC
Q psy14548 317 TVPLAGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLKA 359 (482)
Q Consensus 317 ~~~~~G~GLGL~i~r~~~~~~gG~i~v~s~~g~Gt~f~i~lp~ 359 (482)
....+.|+||.+++.+++. +.+.+ +.|+++.+.-..
T Consensus 108 -~~~~~~G~GL~li~~l~d~----v~~~~--~~G~~v~~~k~~ 143 (161)
T PRK04069 108 -EDLREGGLGLFLIETLMDD----VTVYK--DSGVTVSMTKYI 143 (161)
T ss_pred -cccCCCceeHHHHHHHHHh----EEEEc--CCCcEEEEEEEc
Confidence 1224679999999999986 55554 468888776443
No 66
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms]
Probab=99.04 E-value=3.7e-08 Score=96.51 Aligned_cols=125 Identities=18% Similarity=0.234 Sum_probs=93.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEeeccCCCCCeEEEechhHHHHHHHHHHHHHHHHhhhcCCCCCCCCCE
Q psy14548 190 QCDLIGVVKDAYENARFLCEQYYLSSPELKVTEHNEYEKGEPVRIIYVPSHLYHMLFELFKNSMRATVEHHTDTDVLPPI 269 (482)
Q Consensus 190 ~~~l~~li~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~L~~il~NLl~NAik~t~~~~~~~~~~p~I 269 (482)
+..+.+.++.+++.++.- ......+++... .+. ..=...+..|++++.+++.|-+||..... |
T Consensus 369 dL~l~qai~~l~~Em~~~-----ergihcq~~~~~--n~~--~ldet~rvTLyRl~QE~LNNI~KHA~AS~--------V 431 (497)
T COG3851 369 DLTLEQAIRSLLREMELE-----ERGIHCQLDWRI--NET--ALDETQRVTLYRLCQELLNNICKHADASA--------V 431 (497)
T ss_pred cccHHHHHHHHHHHhhhh-----hcCeEEEecccc--Ccc--cCCcceeEeHHHHHHHHHHHHHhccccce--------E
Confidence 447888888888777641 112222333222 111 10112244589999999999999986654 9
Q ss_pred EEEEEecCceeEEEEEEcCCCCChhhHhhhhhcccccCCCCCCCCCCCCCCCCcccCHHHHHHHHHHhCCEEEEEeecCC
Q psy14548 270 EVSVVRGKEDICVKMSDKGGGIPRSVTDMLFHYMYSTAPQPSKSDAHTVPLAGYGYGLPISRLYARYFHGDIMLLSCDGL 349 (482)
Q Consensus 270 ~v~~~~~~~~~~i~V~D~G~GI~~~~~~~if~~f~~t~~~~~~~~~~~~~~~G~GLGL~i~r~~~~~~gG~i~v~s~~g~ 349 (482)
+|.+..+++.+.++|+|+|.|+|+.. +-.|+||.-.+.-|...||++.++| ..
T Consensus 432 ~i~l~~~~e~l~Lei~DdG~Gl~~~~-------------------------~v~G~Gl~GmrERVsaLGG~ltlss--q~ 484 (497)
T COG3851 432 TIQLWQQDERLMLEIEDDGSGLPPGS-------------------------GVQGFGLTGMRERVSALGGTLTLSS--QH 484 (497)
T ss_pred EEEEeeCCcEEEEEEecCCcCCCCCC-------------------------CccCcCcchHHHHHHHhCCceEEEe--cc
Confidence 99999999999999999999999862 3568999999999999999999988 57
Q ss_pred cEEEEEEee
Q psy14548 350 GTDAIIYLK 358 (482)
Q Consensus 350 Gt~f~i~lp 358 (482)
||++.+.+|
T Consensus 485 GTrviVnLP 493 (497)
T COG3851 485 GTRVIVNLP 493 (497)
T ss_pred CcEEEEecc
Confidence 999999998
No 67
>TIGR01924 rsbW_low_gc serine-protein kinase RsbW. This model describes the anti-sigma B factor also known as serine-protein kinase RsbW. Sigma B controls the general stress regulon in B subtilis and is activated by cell stresses such as stationary phase and heat shock. RsbW binds to sigma B and prevents formation of the transcription complex at the promoter. RsbV (anti-anti-sigma factor) binds to RsbW to inhibit association with sigma B, however RsbW can phosphorylate RsbV, causing disassociation of the RsbV/RsbW complex. Low ATP level or environmental stress causes the dephosphorylation of RsbV.
Probab=98.89 E-value=2.2e-08 Score=90.46 Aligned_cols=102 Identities=14% Similarity=0.116 Sum_probs=77.6
Q ss_pred hHHHHHHHHHHHHHHHHhhhcCCCCCCCCCEEEEEEecCceeEEEEEEcCCCCChhhHhhhhhcccccCCCCCCCCCCCC
Q psy14548 239 SHLYHMLFELFKNSMRATVEHHTDTDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVTDMLFHYMYSTAPQPSKSDAHTV 318 (482)
Q Consensus 239 ~~L~~il~NLl~NAik~t~~~~~~~~~~p~I~v~~~~~~~~~~i~V~D~G~GI~~~~~~~if~~f~~t~~~~~~~~~~~~ 318 (482)
..+..++.+++.||++|+..+.. ...|.|.+...++.+.|.|+|+|.|++++.++..|.+++...+. .
T Consensus 41 ~~l~lav~Ea~~Nai~ha~~~~~----~~~I~I~~~~~~~~l~i~V~D~G~gfd~~~~~~~~~~~~~~~~~--------~ 108 (159)
T TIGR01924 41 EDLKIAVSEACTNAVKHAYKEGE----NGEIGISFHIYEDRLEIIVSDQGDSFDMDTFKQSLGPYDGSEPI--------D 108 (159)
T ss_pred HHHHHHHHHHHHHHHHhccCCCC----CCeEEEEEEEeCCEEEEEEEEcccccCchhhccccCCCCCCCCc--------c
Confidence 45888999999999999854321 23488998888899999999999999999888888776653221 1
Q ss_pred CCCCcccCHHHHHHHHHHhCCEEEEEeecCCcEEEEEEee
Q psy14548 319 PLAGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLK 358 (482)
Q Consensus 319 ~~~G~GLGL~i~r~~~~~~gG~i~v~s~~g~Gt~f~i~lp 358 (482)
...+.|+||+|++.+++ ++.+.+ +.|+++++...
T Consensus 109 ~~~~~G~GL~Li~~L~D----~v~~~~--~~G~~l~l~k~ 142 (159)
T TIGR01924 109 DLREGGLGLFLIETLMD----EVEVYE--DSGVTVAMTKY 142 (159)
T ss_pred cCCCCccCHHHHHHhcc----EEEEEe--CCCEEEEEEEE
Confidence 22467999999999988 566665 45677777643
No 68
>PF14501 HATPase_c_5: GHKL domain
Probab=98.78 E-value=1.7e-07 Score=77.71 Aligned_cols=99 Identities=17% Similarity=0.148 Sum_probs=73.7
Q ss_pred chhHHHHHHHHHHHHHHHHhhhcCCCCCCCCCEEEEEEecCceeEEEEEEcCCCCChhhHhhhhhcccccCCCCCCCCCC
Q psy14548 237 VPSHLYHMLFELFKNSMRATVEHHTDTDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVTDMLFHYMYSTAPQPSKSDAH 316 (482)
Q Consensus 237 d~~~L~~il~NLl~NAik~t~~~~~~~~~~p~I~v~~~~~~~~~~i~V~D~G~GI~~~~~~~if~~f~~t~~~~~~~~~~ 316 (482)
++..|..+|.||++||++++..... .+.|.|.+...++.+.|.|++.-.. + .+.++ + .
T Consensus 2 ~~~dl~~il~nlldNAiea~~~~~~----~~~I~i~~~~~~~~~~i~i~N~~~~---~-~~~~~----~----------~ 59 (100)
T PF14501_consen 2 DDLDLCRILGNLLDNAIEACKKYED----KRFISISIREENGFLVIIIENSCEK---E-IEKLE----S----------S 59 (100)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCC----CcEEEEEEEecCCEEEEEEEECCCC---c-ccccc----c----------c
Confidence 3556889999999999999866431 4569999999999999999999544 1 12222 2 1
Q ss_pred CCCCCCcccCHHHHHHHHHHhCCEEEEEeecCCcEEEEEEee
Q psy14548 317 TVPLAGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLK 358 (482)
Q Consensus 317 ~~~~~G~GLGL~i~r~~~~~~gG~i~v~s~~g~Gt~f~i~lp 358 (482)
.....+.|+||..++.+++.++|++.+.... .=.++.+.||
T Consensus 60 ~~~~~~~G~GL~~v~~i~~~y~g~~~~~~~~-~~f~~~i~ip 100 (100)
T PF14501_consen 60 SSKKKGHGIGLKNVKKILEKYNGSLSIESED-GIFTVKIVIP 100 (100)
T ss_pred ccCCCCCCcCHHHHHHHHHHCCCEEEEEEEC-CEEEEEEEEC
Confidence 1234789999999999999999999987654 3345555565
No 69
>COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]
Probab=98.57 E-value=8.4e-06 Score=86.27 Aligned_cols=99 Identities=22% Similarity=0.254 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCCCCCEEEEEEecCceeEEEEEEcCCCCChhhHhhhhhcccccCCCCCCCCCCCCCCC
Q psy14548 242 YHMLFELFKNSMRATVEHHTDTDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVTDMLFHYMYSTAPQPSKSDAHTVPLA 321 (482)
Q Consensus 242 ~~il~NLl~NAik~t~~~~~~~~~~p~I~v~~~~~~~~~~i~V~D~G~GI~~~~~~~if~~f~~t~~~~~~~~~~~~~~~ 321 (482)
..++..|++||++|+.+... ....|.|.+...++.+.++|+|||+||+++....+.+.. +
T Consensus 352 ~l~lqpLvENAi~hgi~~~~---~~~~I~i~~~~~~~~i~i~i~Dng~g~~~~~~~~~~~~~-----------------~ 411 (456)
T COG2972 352 KLVLQPLVENAIEHGIEPKR---PGGSIAISAKKQDDVIQISISDNGPGIDEEKLEGLSTKG-----------------E 411 (456)
T ss_pred hHHHhHHHHHHHHHhcccCC---CCCEEEEEEEEcCCEEEEEEeeCCCCCChhHHHHHHhhc-----------------c
Confidence 46788999999999965442 223488888888899999999999999998776554321 1
Q ss_pred C-cccCHHHHHHHHHHhCCE--EEEEeecCCcEEEEEEeeCC
Q psy14548 322 G-YGYGLPISRLYARYFHGD--IMLLSCDGLGTDAIIYLKAL 360 (482)
Q Consensus 322 G-~GLGL~i~r~~~~~~gG~--i~v~s~~g~Gt~f~i~lp~~ 360 (482)
+ .|+||.-++..++.+-|. +.+.|.+++||.+.+.+|..
T Consensus 412 ~r~giGL~Nv~~rl~~~~g~~~~~i~s~~~~gt~v~~~~~~~ 453 (456)
T COG2972 412 NRSGIGLSNVKERLKLYFGEPGLSIDSQPGKGTFVQIIIPKR 453 (456)
T ss_pred CcccccHHHHHHHHHHeeCCcceeEeecCCCcEEEEEEeehh
Confidence 2 699999999999988887 68899999999999999875
No 70
>TIGR00585 mutl DNA mismatch repair protein MutL. All proteins in this family for which the functions are known are involved in the process of generalized mismatch repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.52 E-value=5.9e-07 Score=90.20 Aligned_cols=102 Identities=18% Similarity=0.138 Sum_probs=68.8
Q ss_pred hHHHHHHHHHHHHHHHHhhhcCCCCCCCCCEEEEEEecCceeEEEEEEcCCCCChhhHhhhhhcccccCCCCCCCCCCCC
Q psy14548 239 SHLYHMLFELFKNSMRATVEHHTDTDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVTDMLFHYMYSTAPQPSKSDAHTV 318 (482)
Q Consensus 239 ~~L~~il~NLl~NAik~t~~~~~~~~~~p~I~v~~~~~~~~~~i~V~D~G~GI~~~~~~~if~~f~~t~~~~~~~~~~~~ 318 (482)
..+.+++.||++||++|... .|.|.+..+ +...|.|.|+|.||++++++++|++|++++.....+.....
T Consensus 21 ~~~~~~l~eLi~Na~dA~a~---------~I~i~~~~~-~~~~i~V~DnG~Gi~~~~l~~~~~~~~tsk~~~~~~~~~~~ 90 (312)
T TIGR00585 21 ERPASVVKELVENSLDAGAT---------RIDVEIEEG-GLKLIEVSDNGSGIDKEDLPLACERHATSKIQSFEDLERIE 90 (312)
T ss_pred hhHHHHHHHHHHHHHHCCCC---------EEEEEEEeC-CEEEEEEEecCCCCCHHHHHHHhhCCCcCCCCChhHhhccc
Confidence 35789999999999998632 188877653 34569999999999999999999999997643211112223
Q ss_pred CCCCcccCHHHHHHHHHHhCCEEEEEeec--CCcEEEEE
Q psy14548 319 PLAGYGYGLPISRLYARYFHGDIMLLSCD--GLGTDAII 355 (482)
Q Consensus 319 ~~~G~GLGL~i~r~~~~~~gG~i~v~s~~--g~Gt~f~i 355 (482)
..+-.|.||+-...+ ..+.+.|.. +.+..+.+
T Consensus 91 ~~G~rG~al~si~~~-----s~~~i~S~~~~~~~~~~~~ 124 (312)
T TIGR00585 91 TLGFRGEALASISSV-----SRLTITTKTSAADGLAWQA 124 (312)
T ss_pred ccCccchHHHHHHhh-----CcEEEEEeecCCCcceEEE
Confidence 334457777554443 257777764 33444433
No 71
>COG3275 LytS Putative regulator of cell autolysis [Signal transduction mechanisms]
Probab=98.52 E-value=2.8e-06 Score=86.54 Aligned_cols=134 Identities=18% Similarity=0.269 Sum_probs=92.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEeeccCCCCCeEEEechhHHHHHHHHHHHHHHHHhhhcCCCCCCCCCEE
Q psy14548 191 CDLIGVVKDAYENARFLCEQYYLSSPELKVTEHNEYEKGEPVRIIYVPSHLYHMLFELFKNSMRATVEHHTDTDVLPPIE 270 (482)
Q Consensus 191 ~~l~~li~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~L~~il~NLl~NAik~t~~~~~~~~~~p~I~ 270 (482)
|.+.+-++++-...+----+ ++. ++++..++++. ..=...|. .++.-|++||+||.-... .+...|.
T Consensus 417 v~L~kEl~~v~AYl~IEkAR-F~~----rL~v~i~id~~--l~~~~iP~---filQPLVENAIKHG~~~~---~~~g~V~ 483 (557)
T COG3275 417 VTLSKELEHVNAYLSIEKAR-FGD----RLDVVIDIDEE--LRQVQIPS---FILQPLVENAIKHGISQL---KDTGRVT 483 (557)
T ss_pred eehHHHHHHHHHHHHHHHHh-cCC----ceEEEEecCHH--HhhccCch---hhhhHHHHHHHHhcccch---hcCCceE
Confidence 47777777766555432111 111 22222222221 22223343 356678999999975432 2233499
Q ss_pred EEEEecCceeEEEEEEcCCCCChhhHhhhhhcccccCCCCCCCCCCCCCCCCcccCHHHHHHHHHHhCC---EEEEEeec
Q psy14548 271 VSVVRGKEDICVKMSDKGGGIPRSVTDMLFHYMYSTAPQPSKSDAHTVPLAGYGYGLPISRLYARYFHG---DIMLLSCD 347 (482)
Q Consensus 271 v~~~~~~~~~~i~V~D~G~GI~~~~~~~if~~f~~t~~~~~~~~~~~~~~~G~GLGL~i~r~~~~~~gG---~i~v~s~~ 347 (482)
|++...+.++.+.|+|||.||++++ + .|.|+||..+++-++.+-| -+.+.+.+
T Consensus 484 I~V~~~d~~l~i~VeDng~li~p~~---------~---------------~g~giGL~nv~~RLk~lyG~~~gl~i~~~~ 539 (557)
T COG3275 484 ISVEKEDADLRIEVEDNGGLIQPDE---------E---------------DGTGIGLANVHKRLKLLYGDDEGLHIESLE 539 (557)
T ss_pred EEEEEeCCeEEEEEecCCCCcCCCC---------C---------------CCCChHHHHHHHHHHHhcCccccceEEecc
Confidence 9999999999999999999999961 1 5899999999999988877 58899999
Q ss_pred CCcEEEEEEeeCCC
Q psy14548 348 GLGTDAIIYLKALS 361 (482)
Q Consensus 348 g~Gt~f~i~lp~~~ 361 (482)
..||++.+++|...
T Consensus 540 q~gTri~f~lp~~~ 553 (557)
T COG3275 540 QAGTRIIFRLPLQR 553 (557)
T ss_pred CCCcEEEEEecCcc
Confidence 89999999999754
No 72
>PF13581 HATPase_c_2: Histidine kinase-like ATPase domain
Probab=98.42 E-value=2.3e-06 Score=73.68 Aligned_cols=96 Identities=15% Similarity=0.141 Sum_probs=72.0
Q ss_pred hhHHHHHHHHHHHHHHHHhhhcCCCCCCCCCEEEEEEecCceeEEEEEEcCCCCChhhHhhhhhcccccCCCCCCCCCCC
Q psy14548 238 PSHLYHMLFELFKNSMRATVEHHTDTDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVTDMLFHYMYSTAPQPSKSDAHT 317 (482)
Q Consensus 238 ~~~L~~il~NLl~NAik~t~~~~~~~~~~p~I~v~~~~~~~~~~i~V~D~G~GI~~~~~~~if~~f~~t~~~~~~~~~~~ 317 (482)
...+..++.+++.||++|+..+.. ..+|.|.+...++.+.|.|+|+|.|+++...+.-... ..
T Consensus 29 ~~~~~lav~E~~~Nav~H~~~~~~----~~~v~v~~~~~~~~l~i~v~D~G~~~d~~~~~~~~~~-------------~~ 91 (125)
T PF13581_consen 29 RDDLELAVSEALTNAVEHGYPGDP----DGPVDVRLEVDPDRLRISVRDNGPGFDPEQLPQPDPW-------------EP 91 (125)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCC----CcEEEEEEEEcCCEEEEEEEECCCCCChhhccCcccc-------------cC
Confidence 357889999999999999866432 2348888889999999999999999988754322110 00
Q ss_pred CCCCCcccCHHHHHHHHHHhCCEEEEEeecCCcEEEEEE
Q psy14548 318 VPLAGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIY 356 (482)
Q Consensus 318 ~~~~G~GLGL~i~r~~~~~~gG~i~v~s~~g~Gt~f~i~ 356 (482)
......|+||.|++.++..+ .+ + .+.|+++++.
T Consensus 92 ~~~~~~G~Gl~li~~l~D~~----~~-~-~~~gn~v~l~ 124 (125)
T PF13581_consen 92 DSLREGGRGLFLIRSLMDEV----DY-R-EDGGNTVTLR 124 (125)
T ss_pred CCCCCCCcCHHHHHHHHcEE----EE-E-CCCeEEEEEE
Confidence 23357899999999999875 44 3 6788988764
No 73
>COG4564 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=98.38 E-value=7.5e-05 Score=72.85 Aligned_cols=121 Identities=19% Similarity=0.212 Sum_probs=90.0
Q ss_pred HHHHhhcCCCCceEEEeeccCCCCCeEEEechhHHHHHHHHHHHHHHHHhhhcCCCCCCCCCEEEEEEecCceeEEEEEE
Q psy14548 207 LCEQYYLSSPELKVTEHNEYEKGEPVRIIYVPSHLYHMLFELFKNSMRATVEHHTDTDVLPPIEVSVVRGKEDICVKMSD 286 (482)
Q Consensus 207 l~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~L~~il~NLl~NAik~t~~~~~~~~~~p~I~v~~~~~~~~~~i~V~D 286 (482)
+|+.+- ..+.+.+.+..+..+. .-.......|++|+.+-+.|-=||+... .|.|.+....+.+.+.|+|
T Consensus 329 L~~~f~-~~tg~~itle~~~~p~--~l~~e~~talyRv~QEaltNIErHa~At--------rv~ill~~~~d~vql~vrD 397 (459)
T COG4564 329 LLEDFK-ERTGIEITLEFDTQPG--KLKPEVATALYRVVQEALTNIERHAGAT--------RVTILLQQMGDMVQLMVRD 397 (459)
T ss_pred HHHHhh-hccCeEEEEEecCCcc--cCCcHHHHHHHHHHHHHHHHHHhhcCCe--------EEEEEeccCCcceEEEEec
Confidence 444332 3556666665532221 1123346679999999999998887322 2888888889999999999
Q ss_pred cCCCCChhhHhhhhhcccccCCCCCCCCCCCCCCCCcccCHHHHHHHHHHhCCEEEEEeecCCcEEEEEEeeCCC
Q psy14548 287 KGGGIPRSVTDMLFHYMYSTAPQPSKSDAHTVPLAGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLKALS 361 (482)
Q Consensus 287 ~G~GI~~~~~~~if~~f~~t~~~~~~~~~~~~~~~G~GLGL~i~r~~~~~~gG~i~v~s~~g~Gt~f~i~lp~~~ 361 (482)
||+|++.+... . .-.|+||--.+.-+..+||.+.++|.+. ||..++.||...
T Consensus 398 nG~GF~~~~~~--------------------~--~~~GiGLRNMrERma~~GG~~~v~s~p~-GTel~v~Lp~~~ 449 (459)
T COG4564 398 NGVGFSVKEAL--------------------Q--KRHGIGLRNMRERMAHFGGELEVESSPQ-GTELTVLLPLDA 449 (459)
T ss_pred CCCCccchhhc--------------------c--CccccccccHHHHHHHhCceEEEEecCC-CcEEEEEecchh
Confidence 99999876421 1 2379999999999999999999999775 999999999754
No 74
>KOG0519|consensus
Probab=98.20 E-value=8.9e-07 Score=99.12 Aligned_cols=220 Identities=19% Similarity=0.152 Sum_probs=153.2
Q ss_pred HHHHHHHHHHHhhchhHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhhHHHHHHHHHHhhccccccCCCCCCcc
Q psy14548 105 KFCKALVKIRNRHSDVVQTMAQGVMELKDSHDVDHQTENSIQYFLDRFYMSRISIRMLINQHTLLFGDELTRGDSSLRHI 184 (482)
Q Consensus 105 ~f~~~l~~~l~~~~~~i~~la~g~~e~~~~~~~~~~~~e~~~~~Ld~i~~sri~~r~Li~~~l~L~~~~~~~~~~~~~~i 184 (482)
.|...++|++++|.+- |..... .+...+.+...++.....+....-.++++.+...+ ...+..
T Consensus 223 ~~~~~~sHeir~p~~~------~~~~~~----~~t~~~~~~~~~~~~~~~~~~~~~s~ln~i~d~~~-------v~~g~~ 285 (786)
T KOG0519|consen 223 GFLATLSHEIRTPLNG------GMLGGL----SDTDLDSDQRLILNTDRVSAKSLLSLLNDILDLSK-------VESGKG 285 (786)
T ss_pred hhcccccceeeccccc------CcceEE----eccccchHHHHHHHHHhhhccccchhHHHhhcccc-------cccccc
Confidence 3888899999998665 111111 11223445566666655554444445565555543 223444
Q ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEeeccCCCCCeEEEechhHHHHHHHHHHHHHHHHhhhcCCCCC
Q psy14548 185 GCIDPQCDLIGVVKDAYENARFLCEQYYLSSPELKVTEHNEYEKGEPVRIIYVPSHLYHMLFELFKNSMRATVEHHTDTD 264 (482)
Q Consensus 185 g~i~~~~~l~~li~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~L~~il~NLl~NAik~t~~~~~~~~ 264 (482)
..+..++++..+++.++......+.. ........++.+.+-.+.+|+..+.|++.|++.||+|++..++.
T Consensus 286 ~l~~~rf~l~~ll~~~~~~~~e~~~~-------~~~~l~~~~~~~~p~~v~~de~~~~qv~~n~v~naik~t~~~~i--- 355 (786)
T KOG0519|consen 286 ELVAKRFDLRTLLNFVISLLSELSQA-------KYAILVLDLSSGVPRNVRGDEARLRQVIANLVSNAIKFTHAGHL--- 355 (786)
T ss_pred eeeeeecchHhhhhhhhhhhHHHhhc-------CCeEEEEecCCCCcceeeccceeeeeeehhhccceecccccceE---
Confidence 56777889999999999887775542 22222222333456789999999999999999999999877663
Q ss_pred CCCCEEEEEEec------------------------------------------------CceeEEEEEEcCCCCChhhH
Q psy14548 265 VLPPIEVSVVRG------------------------------------------------KEDICVKMSDKGGGIPRSVT 296 (482)
Q Consensus 265 ~~p~I~v~~~~~------------------------------------------------~~~~~i~V~D~G~GI~~~~~ 296 (482)
.+.+... --.-.+.+.|+|.||+....
T Consensus 356 -----~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~i~~~~~ 430 (786)
T KOG0519|consen 356 -----EESVIAREELSESNDVLLRAKEEAHMAGKARIDFLQKMSHAMRAPRHNIISLLSLLLQDIVLSPDSGLEIQTVMR 430 (786)
T ss_pred -----EEEEEeehhcchhhHHHHhhhhhhhhccchhhhHHHHhccccccccccccccchhhHhheEeccCCceeEehhhh
Confidence 2222110 01234678999999999887
Q ss_pred hh-hhhcccccCCCCCCCCCCCCCCCCcccCHHHHHHHHHHhCCEEEEEeecCCcEEEEEEeeCCCC
Q psy14548 297 DM-LFHYMYSTAPQPSKSDAHTVPLAGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLKALSN 362 (482)
Q Consensus 297 ~~-if~~f~~t~~~~~~~~~~~~~~~G~GLGL~i~r~~~~~~gG~i~v~s~~g~Gt~f~i~lp~~~~ 362 (482)
.. +|..|-+. +.+..+..+|+|+|+.+++.++++++|.+.+.+....|++|.+.++....
T Consensus 431 ~~~~~~~~~q~------~~~~~~~~~gt~~~~~i~~~l~~l~~~~~~~~~~~~~~~t~~~~~~~~~~ 491 (786)
T KOG0519|consen 431 SSNVFTSLIQA------DPDITRLYGGTGLGESIVFSLVELMSGEISDISCISLGKTFSFTLDLLTN 491 (786)
T ss_pred hhhHHHHHhcc------ccccccccCCCcccchhhccHHHHHHHHhhhhhhhccCceeeEEEEeccC
Confidence 77 99998873 44467778999999999999999999999999988899999999886543
No 75
>PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B ....
Probab=98.03 E-value=5.7e-06 Score=72.77 Aligned_cols=103 Identities=20% Similarity=0.296 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCCCCCEEEEEEec-CceeEEEEEEcCCCCChhhHhhhhhcccccCCCCCCCCCCCCCC
Q psy14548 242 YHMLFELFKNSMRATVEHHTDTDVLPPIEVSVVRG-KEDICVKMSDKGGGIPRSVTDMLFHYMYSTAPQPSKSDAHTVPL 320 (482)
Q Consensus 242 ~~il~NLl~NAik~t~~~~~~~~~~p~I~v~~~~~-~~~~~i~V~D~G~GI~~~~~~~if~~f~~t~~~~~~~~~~~~~~ 320 (482)
..+|.+|++||+.+.... |.|.+... .+...|.|.|+|.||+++++..+|...++.+.. .......
T Consensus 4 ~~al~ElI~Ns~DA~a~~---------I~I~i~~~~~~~~~i~I~DnG~Gm~~~~l~~~~~~g~s~k~~----~~~~~~~ 70 (137)
T PF13589_consen 4 EDALRELIDNSIDAGATN---------IKISIDEDKKGERYIVIEDNGEGMSREDLESFFRIGRSSKKS----EKDRQSI 70 (137)
T ss_dssp THHHHHHHHHHHHHHHHH---------EEEEEEEETTTTTEEEEEESSS---HHHHHHHTTCHHTHHHH----HHHGGGG
T ss_pred HHHHHHHHHHHHHccCCE---------EEEEEEcCCCCCcEEEEEECCcCCCHHHHHHhccccCCCCCc----hhhhhcC
Confidence 578999999999998665 88888766 466789999999999999999988766654320 0012234
Q ss_pred CCcccCHHHHHHHHHHhCCEEEEEeec-CCcEEEEEEeeCC
Q psy14548 321 AGYGYGLPISRLYARYFHGDIMLLSCD-GLGTDAIIYLKAL 360 (482)
Q Consensus 321 ~G~GLGL~i~r~~~~~~gG~i~v~s~~-g~Gt~f~i~lp~~ 360 (482)
+..|+|+..+- -.++..+.|.|.. +....+.+.....
T Consensus 71 G~~G~G~k~A~---~~~~~~~~v~S~~~~~~~~~~~~~~~~ 108 (137)
T PF13589_consen 71 GRFGIGLKLAI---FSLGDRVEVISKTNGESFTYTIDYDWI 108 (137)
T ss_dssp GGGTSGCGGGG---GGTEEEEEEEEESTTSSSEEEEEEEEE
T ss_pred CCcceEHHHHH---HHhcCEEEEEEEECCCCcEEEEEEecc
Confidence 56788833221 1356778888865 3334555655543
No 76
>COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms]
Probab=97.99 E-value=0.00011 Score=65.18 Aligned_cols=96 Identities=16% Similarity=0.136 Sum_probs=68.9
Q ss_pred echhHHHHHHHHHHHHHHHHhhhcCCCCCCCCCEEEEEEecCceeEEEEEEcCCCCChhhHhhhhhcccccCCCCCCCCC
Q psy14548 236 YVPSHLYHMLFELFKNSMRATVEHHTDTDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVTDMLFHYMYSTAPQPSKSDA 315 (482)
Q Consensus 236 ~d~~~L~~il~NLl~NAik~t~~~~~~~~~~p~I~v~~~~~~~~~~i~V~D~G~GI~~~~~~~if~~f~~t~~~~~~~~~ 315 (482)
-+-..+..++.+++.||++|+-.+.. ...+|.|.+...++.+.+.|+|.|+||.+ .+..+.+.+.+.+
T Consensus 36 ~~~~~l~~av~E~~~N~v~Ha~~~~~---~~g~I~i~~~~~~~~~~i~i~D~G~~~~~--~~~~~~~~~~~~~------- 103 (146)
T COG2172 36 VDIADLAIAVSEALTNAVKHAYKLDP---SEGEIRIEVSLDDGKLEIRIWDQGPGIED--LEESLGPGDTTAE------- 103 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCC---CCceEEEEEEEcCCeEEEEEEeCCCCCCC--HHHhcCCCCCCCc-------
Confidence 34567899999999999999966432 12349999999999999999999977655 4555666655432
Q ss_pred CCCCCCCcccCHHHHHHHHHHhCCEEEEEeecCCc
Q psy14548 316 HTVPLAGYGYGLPISRLYARYFHGDIMLLSCDGLG 350 (482)
Q Consensus 316 ~~~~~~G~GLGL~i~r~~~~~~gG~i~v~s~~g~G 350 (482)
....-|+||.++++++. ++.+.+..+.+
T Consensus 104 ---~~~~~G~Gl~l~~~~~D----~~~~~~~~~~~ 131 (146)
T COG2172 104 ---GLQEGGLGLFLAKRLMD----EFSYERSEDGR 131 (146)
T ss_pred ---ccccccccHHHHhhhhe----eEEEEeccCCc
Confidence 12345899999998765 46667555543
No 77
>PRK00095 mutL DNA mismatch repair protein; Reviewed
Probab=97.86 E-value=5.6e-05 Score=82.75 Aligned_cols=93 Identities=16% Similarity=0.148 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCCCCCCEEEEEEecCceeEEEEEEcCCCCChhhHhhhhhcccccCCCCCCCCCCCCC
Q psy14548 240 HLYHMLFELFKNSMRATVEHHTDTDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVTDMLFHYMYSTAPQPSKSDAHTVP 319 (482)
Q Consensus 240 ~L~~il~NLl~NAik~t~~~~~~~~~~p~I~v~~~~~~~~~~i~V~D~G~GI~~~~~~~if~~f~~t~~~~~~~~~~~~~ 319 (482)
.+..++.+|++||+.+... .|.|.+. .++...|+|.|+|.||++++++.+|.++++++-....|-.....
T Consensus 22 ~~~svvkElveNsiDAgat---------~I~v~i~-~~g~~~i~V~DnG~Gi~~~~~~~~~~~~~tsKi~~~~dl~~~~t 91 (617)
T PRK00095 22 RPASVVKELVENALDAGAT---------RIDIEIE-EGGLKLIRVRDNGCGISKEDLALALARHATSKIASLDDLEAIRT 91 (617)
T ss_pred CHHHHHHHHHHHHHhCCCC---------EEEEEEE-eCCeEEEEEEEcCCCCCHHHHHHHhhccCCCCCCChhHhhcccc
Confidence 4678999999999997622 1888885 34567899999999999999999999988765321001111122
Q ss_pred CCCcccCHHHHHHHHHHhCCEEEEEeec
Q psy14548 320 LAGYGYGLPISRLYARYFHGDIMLLSCD 347 (482)
Q Consensus 320 ~~G~GLGL~i~r~~~~~~gG~i~v~s~~ 347 (482)
.+=.|.||+-...+ ..+.+.|..
T Consensus 92 ~GfrGeAL~sI~~v-----s~l~i~s~~ 114 (617)
T PRK00095 92 LGFRGEALPSIASV-----SRLTLTSRT 114 (617)
T ss_pred CCcchhHHHhhhhc-----eEEEEEEec
Confidence 33356666655443 356666654
No 78
>PRK05559 DNA topoisomerase IV subunit B; Reviewed
Probab=97.48 E-value=0.00022 Score=78.07 Aligned_cols=106 Identities=18% Similarity=0.205 Sum_probs=72.7
Q ss_pred chhHHHHHHHHHHHHHHHHhhhcCCCCCCCCCEEEEEEecCceeEEEEEEcCCCCChhhHhh--------hhhcccccCC
Q psy14548 237 VPSHLYHMLFELFKNSMRATVEHHTDTDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVTDM--------LFHYMYSTAP 308 (482)
Q Consensus 237 d~~~L~~il~NLl~NAik~t~~~~~~~~~~p~I~v~~~~~~~~~~i~V~D~G~GI~~~~~~~--------if~~f~~t~~ 308 (482)
+...|.+++.+|++||+.....++. ..|.|.+..++ .|+|+|||.|||.+..+. +|.....+..
T Consensus 34 ~~~gl~~lv~EivdNaiDe~~ag~a-----~~I~V~i~~dg---~I~V~DnGrGIP~~~~~~~~~~~~E~v~t~lhagsK 105 (631)
T PRK05559 34 DTRGLHHLVQEVIDNSVDEALAGHG-----KRIEVTLHADG---SVSVRDNGRGIPVGIHPEEGKSGVEVILTKLHAGGK 105 (631)
T ss_pred CCchhhhhhhhhhccccchhhcCCC-----CEEEEEEeCCC---cEEEEEcCCCCCcccccccCCcchheeeeeccccCc
Confidence 3567999999999999998765432 34888887653 789999999999998888 8877555432
Q ss_pred CCCCCCC-CCCCCCCcccCHHHHHHHHHHhCCEEEEEeecCCcEEEEEEee
Q psy14548 309 QPSKSDA-HTVPLAGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLK 358 (482)
Q Consensus 309 ~~~~~~~-~~~~~~G~GLGL~i~r~~~~~~gG~i~v~s~~g~Gt~f~i~lp 358 (482)
. ++. .....+-.|.|++.+..+.+. +.+.+.. .|-.+...+.
T Consensus 106 f---~~~~yk~SgGl~GvGls~vNalS~~----l~V~s~r-~g~~~~~~f~ 148 (631)
T PRK05559 106 F---SNKAYKFSGGLHGVGVSVVNALSSR----LEVEVKR-DGKVYRQRFE 148 (631)
T ss_pred c---CCccccccCcccccchhhhhhheee----EEEEEEe-CCeEEEEEEE
Confidence 1 111 122233479999999887664 4555543 2444555554
No 79
>TIGR01059 gyrB DNA gyrase, B subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV. Proteins scoring above the noise cutoff for this model and below the trusted cutoff for topoisomerase IV models probably should be designated GyrB.
Probab=96.83 E-value=0.0015 Score=72.01 Aligned_cols=89 Identities=19% Similarity=0.354 Sum_probs=56.3
Q ss_pred hhHHHHHHHHHHHHHHHHhhhcCCCCCCCCCEEEEEEecCceeEEEEEEcCCCCChhhHh--------hhhhcccccCCC
Q psy14548 238 PSHLYHMLFELFKNSMRATVEHHTDTDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVTD--------MLFHYMYSTAPQ 309 (482)
Q Consensus 238 ~~~L~~il~NLl~NAik~t~~~~~~~~~~p~I~v~~~~~~~~~~i~V~D~G~GI~~~~~~--------~if~~f~~t~~~ 309 (482)
+.-|.+++.+|++||+.-...++. ..|.|.+..++ .|+|+|||.|||.+..+ .+|.-...+...
T Consensus 28 ~~gl~~vv~Elv~NaiDe~~ag~a-----~~I~V~i~~~g---~I~V~DnG~GIp~~~h~~~ki~~~e~i~~~l~ag~kf 99 (654)
T TIGR01059 28 ETGLHHLVYEVVDNSIDEAMAGYC-----DTINVTINDDG---SVTVEDNGRGIPVDIHPEEGISAVEVVLTVLHAGGKF 99 (654)
T ss_pred cchHHhhhHHhhhccccccccCCC-----CEEEEEEeCCC---cEEEEEeCCCcCccccCcCCCCchHHheeeecccCcc
Confidence 456899999999999984433321 23888887543 39999999999987432 233332222211
Q ss_pred CCCCCCCCCCCCCcccCHHHHHHHHHH
Q psy14548 310 PSKSDAHTVPLAGYGYGLPISRLYARY 336 (482)
Q Consensus 310 ~~~~~~~~~~~~G~GLGL~i~r~~~~~ 336 (482)
.+.......+-.|.||+.+..+.+.
T Consensus 100 --~~~~~k~s~G~~G~gl~~inalS~~ 124 (654)
T TIGR01059 100 --DKDSYKVSGGLHGVGVSVVNALSEW 124 (654)
T ss_pred --CCCcceecCCccchhHHHHHHhcCe
Confidence 0111112334479999999888764
No 80
>PRK05644 gyrB DNA gyrase subunit B; Validated
Probab=96.79 E-value=0.0017 Score=71.18 Aligned_cols=89 Identities=18% Similarity=0.335 Sum_probs=58.1
Q ss_pred hhHHHHHHHHHHHHHHHHhhhcCCCCCCCCCEEEEEEecCceeEEEEEEcCCCCChhhHhh--------hhhcccccCCC
Q psy14548 238 PSHLYHMLFELFKNSMRATVEHHTDTDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVTDM--------LFHYMYSTAPQ 309 (482)
Q Consensus 238 ~~~L~~il~NLl~NAik~t~~~~~~~~~~p~I~v~~~~~~~~~~i~V~D~G~GI~~~~~~~--------if~~f~~t~~~ 309 (482)
+.-|.+++.+|++||+.-...++. ..|.|.+..++ .|+|+|||.|||.+..+. ||.-..++..
T Consensus 35 ~~gl~~~v~ElvdNaiDe~~ag~a-----~~I~V~i~~~g---~I~V~DnG~GIp~~~h~~~ki~~~e~i~~~lhag~k- 105 (638)
T PRK05644 35 ERGLHHLVYEIVDNSIDEALAGYC-----DHIEVTINEDG---SITVTDNGRGIPVDIHPKTGKPAVEVVLTVLHAGGK- 105 (638)
T ss_pred hhhHHhhhHHhhhcccccccCCCC-----CEEEEEEeCCC---cEEEEEeCccccCCccCCCCCCchHHheeeecccCc-
Confidence 457899999999999985433321 23888887643 799999999999974332 4443333221
Q ss_pred CCCCCC-CCCCCCCcccCHHHHHHHHHHh
Q psy14548 310 PSKSDA-HTVPLAGYGYGLPISRLYARYF 337 (482)
Q Consensus 310 ~~~~~~-~~~~~~G~GLGL~i~r~~~~~~ 337 (482)
-++. .....+-.|.||+.+..+.+.+
T Consensus 106 --fd~~~yk~s~G~~G~Gls~vnalS~~~ 132 (638)
T PRK05644 106 --FGGGGYKVSGGLHGVGVSVVNALSTWL 132 (638)
T ss_pred --cCCCcccccCCccccchhhhhheeceE
Confidence 1111 1123344799999998887743
No 81
>PRK05218 heat shock protein 90; Provisional
Probab=96.79 E-value=0.0047 Score=67.61 Aligned_cols=97 Identities=14% Similarity=0.125 Sum_probs=55.0
Q ss_pred EEechhHHHHHHHHHHHHHHHHhhhcCC-------CCCCCCCEEEEEEecCceeEEEEEEcCCCCChhhHhhhhhccccc
Q psy14548 234 IIYVPSHLYHMLFELFKNSMRATVEHHT-------DTDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVTDMLFHYMYST 306 (482)
Q Consensus 234 v~~d~~~L~~il~NLl~NAik~t~~~~~-------~~~~~p~I~v~~~~~~~~~~i~V~D~G~GI~~~~~~~if~~f~~t 306 (482)
++.|+. -.+.+|++||..+...... ......+..|.+..+.+.-.|.|+|||.||+.+++...|...-++
T Consensus 23 LYs~~~---v~lRELiqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~i~I~DnG~GMt~eel~~~l~~ia~S 99 (613)
T PRK05218 23 LYSNKE---IFLRELISNASDAIDKLRFEALTDPALYEGDGDLKIRISFDKEARTLTISDNGIGMTREEVIENLGTIAKS 99 (613)
T ss_pred hcCCch---HHHHHHHhCHHHHHHHHHHHhccCccccCCCCCcEEEEEEcCCCCeEEEEECCCCCCHHHHHHHHHhhccc
Confidence 456653 4689999999999643110 000112234444433334459999999999999999877554432
Q ss_pred CCCC---CC--C-CCCCCCCCCcccCHHHHHHH
Q psy14548 307 APQP---SK--S-DAHTVPLAGYGYGLPISRLY 333 (482)
Q Consensus 307 ~~~~---~~--~-~~~~~~~~G~GLGL~i~r~~ 333 (482)
.... .. + .......+..|+|+.-+-.+
T Consensus 100 g~~~f~~k~~~~~~~~~~~iG~fGiGf~S~f~v 132 (613)
T PRK05218 100 GTKEFLEKLKGDQKKDSQLIGQFGVGFYSAFMV 132 (613)
T ss_pred cchhHHHHhhcccccccccccccCcCchhhhhc
Confidence 1100 00 0 11223446688998644443
No 82
>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]
Probab=96.68 E-value=0.0029 Score=69.36 Aligned_cols=56 Identities=21% Similarity=0.311 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCCCCCEEEEEEecCceeEEEEEEcCCCCChhhHhhhhhcccccC
Q psy14548 242 YHMLFELFKNSMRATVEHHTDTDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVTDMLFHYMYSTA 307 (482)
Q Consensus 242 ~~il~NLl~NAik~t~~~~~~~~~~p~I~v~~~~~~~~~~i~V~D~G~GI~~~~~~~if~~f~~t~ 307 (482)
.-|+.+|++||+.+.... |.|.+..++ .-.|+|+|||.||++++++..+.++.|++
T Consensus 25 aSVVKELVENSlDAGAt~---------I~I~ve~gG-~~~I~V~DNG~Gi~~~Dl~la~~rHaTSK 80 (638)
T COG0323 25 ASVVKELVENSLDAGATR---------IDIEVEGGG-LKLIRVRDNGSGIDKEDLPLALLRHATSK 80 (638)
T ss_pred HHHHHHHHhcccccCCCE---------EEEEEccCC-ccEEEEEECCCCCCHHHHHHHHhhhcccc
Confidence 578999999999997432 776665333 33499999999999999999999999876
No 83
>smart00433 TOP2c TopoisomeraseII. Eukaryotic DNA topoisomerase II, GyrB, ParE
Probab=96.62 E-value=0.0026 Score=69.40 Aligned_cols=84 Identities=19% Similarity=0.331 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCCCCCCEEEEEEecCceeEEEEEEcCCCCChhhHh--------hhhhcccccCCCCCC
Q psy14548 241 LYHMLFELFKNSMRATVEHHTDTDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVTD--------MLFHYMYSTAPQPSK 312 (482)
Q Consensus 241 L~~il~NLl~NAik~t~~~~~~~~~~p~I~v~~~~~~~~~~i~V~D~G~GI~~~~~~--------~if~~f~~t~~~~~~ 312 (482)
|.+++.+|++||+.+...++. ..|.|.+..++ .|+|+|||.|||.+..+ -+|....++.. -
T Consensus 2 L~~~v~ElvdNAiD~~~~g~a-----t~I~V~i~~~g---~I~V~DnG~GIp~~~h~~~~~~~~e~v~~~lhag~k---f 70 (594)
T smart00433 2 LHHLVDEIVDNAADEALAGYM-----DTIKVTIDKDN---SISVEDNGRGIPVEIHPKEKKYAPEVIFTVLHAGGK---F 70 (594)
T ss_pred ceEEEeeehhcccchhccCCC-----CEEEEEEeCCC---eEEEEEeCCceeCCccCcCCCCcHHHhhhhhcccCC---C
Confidence 456788999999998755532 23888887654 89999999999976543 23433333221 1
Q ss_pred CCCC-CCCCCCcccCHHHHHHHHH
Q psy14548 313 SDAH-TVPLAGYGYGLPISRLYAR 335 (482)
Q Consensus 313 ~~~~-~~~~~G~GLGL~i~r~~~~ 335 (482)
++.. ....+-.|.||+.+..+.+
T Consensus 71 d~~~~k~s~G~~G~Gls~vnalS~ 94 (594)
T smart00433 71 DDDAYKVSGGLHGVGASVVNALST 94 (594)
T ss_pred CCCCccccCCcccchHHHHHHhcC
Confidence 1111 1223447999999888753
No 84
>PF00512 HisKA: His Kinase A (phospho-acceptor) domain; InterPro: IPR003661 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the dimerisation and phosphoacceptor domain found in histidine kinases. It has been found in bacterial sensor protein/histidine kinases. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms []. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and the phosphotransfer from aspartyl phosphate back to ADP or to water []. The homodimeric domain includes the site of histidine autophosphorylation and phosphate transfer reactions. The structure of the homodimeric domain comprises a closed, four-helical bundle with a left-handed twist, formed by two identical alpha-hairpin subunits.; GO: 0000155 two-component sensor activity, 0007165 signal transduction, 0016020 membrane; PDB: 3DGE_A 2C2A_A 3A0R_A 4EW8_A 2LFS_B 2LFR_B 3JZ3_A 1JOY_B 3ZRW_C 3ZRV_A ....
Probab=96.61 E-value=0.0096 Score=45.07 Aligned_cols=63 Identities=11% Similarity=0.106 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHhhchhHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhhHHHHHHHHHHhhc
Q psy14548 103 LDKFCKALVKIRNRHSDVVQTMAQGVMELKDSHDVDHQTENSIQYFLDRFYMSRISIRMLINQHTLLFG 171 (482)
Q Consensus 103 ~~~f~~~l~~~l~~~~~~i~~la~g~~e~~~~~~~~~~~~e~~~~~Ld~i~~sri~~r~Li~~~l~L~~ 171 (482)
..+|...++|++++|++.|...++.+.+ . ...++++..++++.+..+...+..++++.+.+.+
T Consensus 2 ~~~~~~~isHelr~PL~~i~~~~~~l~~-~-----~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~sr 64 (68)
T PF00512_consen 2 KGEFLASISHELRNPLTAIRGYLELLER-D-----SDLDPEQLREYLDRIRSAADRLNELINDLLDFSR 64 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC-S-----SCC-HHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHH-c-----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4689999999999999999888876655 1 1234556699999999888888889999988875
No 85
>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=96.55 E-value=0.0022 Score=68.56 Aligned_cols=90 Identities=14% Similarity=0.188 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHhhhcCCC-------CCCCCCEEEEEEecCceeEEEEEEcCCCCChhhHhhhhhc--------ccccC
Q psy14548 243 HMLFELFKNSMRATVEHHTD-------TDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVTDMLFHY--------MYSTA 307 (482)
Q Consensus 243 ~il~NLl~NAik~t~~~~~~-------~~~~p~I~v~~~~~~~~~~i~V~D~G~GI~~~~~~~if~~--------f~~t~ 307 (482)
--|.+||+||..+...-... ....+.+.|.+..+.+.-+++|+|||+||..+++..-..- |...-
T Consensus 30 IFLRELISNAsDAidKlr~~al~~~~~~~~~~~~~I~i~~Dk~~kTLtI~DNGIGMT~~Ev~~~LgTIAkSgT~~F~~~l 109 (623)
T COG0326 30 IFLRELISNASDAIDKLRFEALSDPELGEGDSDLRIRISFDKDNKTLTISDNGIGMTKDEVIENLGTIAKSGTKEFLESL 109 (623)
T ss_pred HHHHHHHhhhHHHHHHHHHHhccCccccCCCCCceEEEEEcccCCEEEEEeCCCCCCHHHHHHHHHHhhhccHHHHHHHh
Confidence 44789999999987643211 1123346677776777778999999999999887543221 11100
Q ss_pred CCCCCCCCCCCCCCCcccCHHHHHHHHH
Q psy14548 308 PQPSKSDAHTVPLAGYGYGLPISRLYAR 335 (482)
Q Consensus 308 ~~~~~~~~~~~~~~G~GLGL~i~r~~~~ 335 (482)
. .+.....-.+..|+|++-|-.+++
T Consensus 110 ~---~~~~~~~lIGQFGVGFYSaFmVAd 134 (623)
T COG0326 110 S---EDQKDSDLIGQFGVGFYSAFMVAD 134 (623)
T ss_pred c---cccccccccccccchhhheeeeee
Confidence 0 111122335678999987766554
No 86
>PRK14083 HSP90 family protein; Provisional
Probab=96.48 E-value=0.0058 Score=66.41 Aligned_cols=96 Identities=16% Similarity=0.167 Sum_probs=57.3
Q ss_pred EEechhHHHHHHHHHHHHHHHHhhhcCCCC-CCCCCEEEEEEecCceeEEEEEEcCCCCChhhHhhhhhcccccCCCC-C
Q psy14548 234 IIYVPSHLYHMLFELFKNSMRATVEHHTDT-DVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVTDMLFHYMYSTAPQP-S 311 (482)
Q Consensus 234 v~~d~~~L~~il~NLl~NAik~t~~~~~~~-~~~p~I~v~~~~~~~~~~i~V~D~G~GI~~~~~~~if~~f~~t~~~~-~ 311 (482)
++.|+ ...+.||++||..+........ ...+.|.|.+. +.+...|.|.|||+||+.+++.+.|-....+.... .
T Consensus 20 LYs~~---~iflrELiqNA~DA~~~~~~~~~~~~~~I~I~~~-d~~~~~l~I~DnGiGmt~eel~~~l~~ig~S~k~~~~ 95 (601)
T PRK14083 20 LYSSP---RVYVRELLQNAVDAITARRALDPTAPGRIRIELT-DAGGGTLIVEDNGIGLTEEEVHEFLATIGRSSKRDEN 95 (601)
T ss_pred hcCCc---HHHHHHHHHhHHHHHHhhhccCCCCCceEEEEEc-cCCCcEEEEEeCCCCCCHHHHHHHHhhhccchhhhhh
Confidence 45555 3678999999999975422111 11234777764 44567899999999999999998764333221110 0
Q ss_pred CCCCCCCCCCCcccCHHHHHHH
Q psy14548 312 KSDAHTVPLAGYGYGLPISRLY 333 (482)
Q Consensus 312 ~~~~~~~~~~G~GLGL~i~r~~ 333 (482)
.........+..|+|..-|-.+
T Consensus 96 ~~~~~~~~IG~FGIGf~S~F~v 117 (601)
T PRK14083 96 LGFARNDFLGQFGIGLLSCFLV 117 (601)
T ss_pred hcccccccccccccceEEEEEe
Confidence 0011123346778886644433
No 87
>TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial. This protein is active as an alpha(2)beta(2) heterotetramer.
Probab=96.33 E-value=0.0032 Score=68.86 Aligned_cols=88 Identities=15% Similarity=0.266 Sum_probs=58.3
Q ss_pred hHHHHHHHHHHHHHHHHhhhcCCCCCCCCCEEEEEEecCceeEEEEEEcCCCCChhh--------HhhhhhcccccCCCC
Q psy14548 239 SHLYHMLFELFKNSMRATVEHHTDTDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSV--------TDMLFHYMYSTAPQP 310 (482)
Q Consensus 239 ~~L~~il~NLl~NAik~t~~~~~~~~~~p~I~v~~~~~~~~~~i~V~D~G~GI~~~~--------~~~if~~f~~t~~~~ 310 (482)
....+++.+||+||+.-...++. ..|.|.+..+ -.|+|+|||.|||.+. ++.+|.....+..
T Consensus 29 ~~~~~lv~ElvdNsiDE~~ag~a-----~~I~V~i~~d---~~I~V~DnGrGIp~~~h~~~g~~~~e~v~t~lhagsK-- 98 (625)
T TIGR01055 29 TRPNHLVQEVIDNSVDEALAGFA-----SIIMVILHQD---QSIEVFDNGRGMPVDIHPKEGVSAVEVILTTLHAGGK-- 98 (625)
T ss_pred CCcceeehhhhhcccchhhcCCC-----CEEEEEEeCC---CeEEEEecCCccCcccccccCCcHHHHhhhcccccCC--
Confidence 34578999999999994433322 1288888644 4689999999999988 7777733333322
Q ss_pred CCCCC-CCCCCCCcccCHHHHHHHHHHh
Q psy14548 311 SKSDA-HTVPLAGYGYGLPISRLYARYF 337 (482)
Q Consensus 311 ~~~~~-~~~~~~G~GLGL~i~r~~~~~~ 337 (482)
.++. .....+-.|.||+.+..+.+.+
T Consensus 99 -~~~~~~~~SgG~~GvGls~vnalS~~l 125 (625)
T TIGR01055 99 -FSNKNYHFSGGLHGVGISVVNALSKRV 125 (625)
T ss_pred -CCCCcceecCCCcchhHHHHHHhcCeE
Confidence 1221 1222334799999999888743
No 88
>PTZ00130 heat shock protein 90; Provisional
Probab=96.29 E-value=0.01 Score=65.74 Aligned_cols=114 Identities=18% Similarity=0.152 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHhhhcC-------CCCCCCCCEEEEEEecCceeEEEEEEcCCCCChhhHhhhhhcccccCCCC---CCC-
Q psy14548 245 LFELFKNSMRATVEHH-------TDTDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVTDMLFHYMYSTAPQP---SKS- 313 (482)
Q Consensus 245 l~NLl~NAik~t~~~~-------~~~~~~p~I~v~~~~~~~~~~i~V~D~G~GI~~~~~~~if~~f~~t~~~~---~~~- 313 (482)
|.+||+||..|...-. ......+++.|.+..+.+.-+|.|+|||+||+.+++..-+..--++.... ...
T Consensus 93 LRELISNAsDAldKlr~~~lt~~~~~~~~~~~~I~I~~D~~~~tLtI~DnGIGMT~eEl~~nLgTIA~Sgt~~F~~~l~~ 172 (814)
T PTZ00130 93 LRELISNAADALEKIRFLSLSDESVLGEEKKLEIRISANKEKNILSITDTGIGMTKEDLINNLGTIAKSGTSNFLEAISK 172 (814)
T ss_pred eehHhhhHHHHHHHHHHHHcCCchhcCCCCCceEEEEECCCCCEEEEEECCCCCCHHHHHHHhhhhcccccHHHHHHhhc
Confidence 5689999999975211 00112234666666555556889999999999998766543322211000 000
Q ss_pred -CCCCCCCCCcccCHHHHHHHHHH-------h-----------CCEEEEEee-----cCCcEEEEEEee
Q psy14548 314 -DAHTVPLAGYGYGLPISRLYARY-------F-----------HGDIMLLSC-----DGLGTDAIIYLK 358 (482)
Q Consensus 314 -~~~~~~~~G~GLGL~i~r~~~~~-------~-----------gG~i~v~s~-----~g~Gt~f~i~lp 358 (482)
.....-.+..|+|.+-|-.+++. . +|...+... .+.||+++++|.
T Consensus 173 ~~~~~~lIGQFGVGFYSaFmVAdkV~V~Trs~~~~~~~W~s~g~g~y~I~e~~~~~~~~rGT~I~LhLk 241 (814)
T PTZ00130 173 SGGDMSLIGQFGVGFYSAFLVADKVIVYTKNNNDEQYIWESTADAKFTIYKDPRGSTLKRGTRISLHLK 241 (814)
T ss_pred cCCCcccccccccchhheeeecCEEEEEEcCCCCceEEEEECCCCcEEEEECCCCCCCCCCcEEEEEEC
Confidence 11223456789998776443321 1 133334332 258999999886
No 89
>PRK14939 gyrB DNA gyrase subunit B; Provisional
Probab=95.60 E-value=0.007 Score=67.17 Aligned_cols=88 Identities=20% Similarity=0.387 Sum_probs=56.4
Q ss_pred hHHHHHHHHHHHHHHHHhhhcCCCCCCCCCEEEEEEecCceeEEEEEEcCCCCChhhHh--------hhhhcccccCCCC
Q psy14548 239 SHLYHMLFELFKNSMRATVEHHTDTDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVTD--------MLFHYMYSTAPQP 310 (482)
Q Consensus 239 ~~L~~il~NLl~NAik~t~~~~~~~~~~p~I~v~~~~~~~~~~i~V~D~G~GI~~~~~~--------~if~~f~~t~~~~ 310 (482)
.-|++++.++++||+.-...++. ..|.|++..++ .|+|+|||.|||.+..+ -+|.....+..
T Consensus 36 ~GLhhlv~EivdNaiDE~~AG~a-----~~I~V~i~~dg---sIsV~DnGrGIPvd~h~~~g~~~~Elvlt~lhAggK-- 105 (756)
T PRK14939 36 TGLHHMVYEVVDNAIDEALAGHC-----DDITVTIHADG---SVSVSDNGRGIPTDIHPEEGVSAAEVIMTVLHAGGK-- 105 (756)
T ss_pred cchhhhhhHhhcccccccccCCC-----CEEEEEEcCCC---eEEEEEcCCcccCCcccccCCchhhheeeeecccCC--
Confidence 46899999999999984444422 22888887643 79999999999998433 23332222221
Q ss_pred CCCCC-CCCCCCCcccCHHHHHHHHHHh
Q psy14548 311 SKSDA-HTVPLAGYGYGLPISRLYARYF 337 (482)
Q Consensus 311 ~~~~~-~~~~~~G~GLGL~i~r~~~~~~ 337 (482)
.++. -.-+.+-.|.|++.+..+.+.+
T Consensus 106 -fd~~~ykvSgGlhGvG~svvNAlS~~l 132 (756)
T PRK14939 106 -FDQNSYKVSGGLHGVGVSVVNALSEWL 132 (756)
T ss_pred -CCCCcccccCCccCccceEeehccCeE
Confidence 1111 1112334799999888876643
No 90
>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional
Probab=95.09 E-value=0.045 Score=60.46 Aligned_cols=65 Identities=20% Similarity=0.160 Sum_probs=45.1
Q ss_pred EEechhHHHHHHHHHHHHHHHHhhhcCC-------CCCCCCCEEEEEEecCceeEEEEEEcCCCCChhhHhhhhh
Q psy14548 234 IIYVPSHLYHMLFELFKNSMRATVEHHT-------DTDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVTDMLFH 301 (482)
Q Consensus 234 v~~d~~~L~~il~NLl~NAik~t~~~~~-------~~~~~p~I~v~~~~~~~~~~i~V~D~G~GI~~~~~~~if~ 301 (482)
++.++. -.|.+||+||..|...... .....+.+.|.+..+.+..+|.|.|||+||+.+++.+-|.
T Consensus 22 lYs~~~---iflRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~i~~d~~~~~L~I~DnGiGMt~edl~~~Lg 93 (701)
T PTZ00272 22 FYSNKE---IFLRELISNASDACDKIRYQSLTDPSVLGESPRLCIRVVPDKENKTLTVEDNGIGMTKADLVNNLG 93 (701)
T ss_pred ccCCcc---HhHHHHHhhHHHHHHHHHHHhcCCchhcCCCCceEEEEEEcCCCCEEEEEECCCCCCHHHHHHHhh
Confidence 444543 3478999999999754210 0112345777777777777899999999999998776553
No 91
>COG5381 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.93 E-value=0.071 Score=46.29 Aligned_cols=55 Identities=13% Similarity=0.027 Sum_probs=42.3
Q ss_pred hhHHHHHHHHHHHHHHHHhhhcCCCCCCCCCEEEEEEecCceeEEEEEEcCCCCChhhHhhhh
Q psy14548 238 PSHLYHMLFELFKNSMRATVEHHTDTDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVTDMLF 300 (482)
Q Consensus 238 ~~~L~~il~NLl~NAik~t~~~~~~~~~~p~I~v~~~~~~~~~~i~V~D~G~GI~~~~~~~if 300 (482)
+..+.++..+|++||+||...+. |.|...-......++|++--.+=...+.+++.
T Consensus 61 rhsvgYl~NELiENAVKfra~ge--------Ivieasl~s~~f~~kvsN~vd~~t~~~f~~ll 115 (184)
T COG5381 61 RHSVGYLANELIENAVKFRATGE--------IVIEASLYSHKFIFKVSNIVDLPTTIDFENLL 115 (184)
T ss_pred hhhHHHHHHHHHHhhhcccCCCc--------EEEEEEeccceEEEEecccCCCccHHHHHHHH
Confidence 44578899999999999985542 99999888888999999876665555544443
No 92
>TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation step of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=94.72 E-value=0.019 Score=63.03 Aligned_cols=89 Identities=17% Similarity=0.327 Sum_probs=56.1
Q ss_pred hhHHHHHHHHHHHHHHHHhhhcCCCCCCCCCEEEEEEecCceeEEEEEEcCCCCChhhHh--------hhhhcccccCCC
Q psy14548 238 PSHLYHMLFELFKNSMRATVEHHTDTDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVTD--------MLFHYMYSTAPQ 309 (482)
Q Consensus 238 ~~~L~~il~NLl~NAik~t~~~~~~~~~~p~I~v~~~~~~~~~~i~V~D~G~GI~~~~~~--------~if~~f~~t~~~ 309 (482)
+.-|.+++.++|+||+.-...++. ..|.|++..++ .|+|+|+|.|||-+..+ -+|....++..
T Consensus 32 ~~GL~hlv~EIvdNavDE~~ag~~-----~~I~V~i~~dg---sitV~DnGrGIPv~~h~~~~~~~~E~v~t~LhaGgk- 102 (637)
T TIGR01058 32 SKGLHHLVWEIVDNSVDEVLAGYA-----DNITVTLHKDN---SITVQDDGRGIPTGIHQDGNISTVETVFTVLHAGGK- 102 (637)
T ss_pred cchhheehhhhhcchhhhhhcCCC-----cEEEEEEcCCC---eEEEEECCCcccCcccCcCCCccceeEEEEecccCc-
Confidence 466899999999999986655443 23888887432 68999999999976433 12222222111
Q ss_pred CCCCCCCCC-CCCCcccCHHHHHHHHHHh
Q psy14548 310 PSKSDAHTV-PLAGYGYGLPISRLYARYF 337 (482)
Q Consensus 310 ~~~~~~~~~-~~~G~GLGL~i~r~~~~~~ 337 (482)
-|++.-. ..+-.|.|++.+..+.+.+
T Consensus 103 --fd~~~ykvSGGlhGvG~svvNAlS~~~ 129 (637)
T TIGR01058 103 --FDQGGYKTAGGLHGVGASVVNALSSWL 129 (637)
T ss_pred --CCCCcccccCCcccccccccceeeceE
Confidence 1221111 2233799999998877754
No 93
>KOG1979|consensus
Probab=94.31 E-value=0.041 Score=57.96 Aligned_cols=55 Identities=31% Similarity=0.396 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCCCCCEEEEEEecCceeEEEEEEcCCCCChhhHhhhhhcccccC
Q psy14548 243 HMLFELFKNSMRATVEHHTDTDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVTDMLFHYMYSTA 307 (482)
Q Consensus 243 ~il~NLl~NAik~t~~~~~~~~~~p~I~v~~~~~~~~~~i~V~D~G~GI~~~~~~~if~~f~~t~ 307 (482)
-++.+|+.|++.+.... |.|.+..++ --.+.|+|||.||-.++++-+-++|.+++
T Consensus 30 NAlKEliENSLDA~ST~---------I~V~vk~GG-LKLlQisDnG~GI~reDl~ilCeRftTSK 84 (694)
T KOG1979|consen 30 NALKELIENSLDANSTS---------IDVLVKDGG-LKLLQISDNGSGIRREDLPILCERFTTSK 84 (694)
T ss_pred HHHHHHHhccccCCCce---------EEEEEecCC-eEEEEEecCCCccchhhhHHHHHHhhhhh
Confidence 46788999999886332 777765433 34578999999999999999999998865
No 94
>PLN03237 DNA topoisomerase 2; Provisional
Probab=93.00 E-value=0.2 Score=59.02 Aligned_cols=106 Identities=14% Similarity=0.287 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHHHHhhh-cCCCCCCCCCEEEEEEecCceeEEEEEEcCCCCChhhHh--------hhhhcccccCCCC
Q psy14548 240 HLYHMLFELFKNSMRATVE-HHTDTDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVTD--------MLFHYMYSTAPQP 310 (482)
Q Consensus 240 ~L~~il~NLl~NAik~t~~-~~~~~~~~p~I~v~~~~~~~~~~i~V~D~G~GI~~~~~~--------~if~~f~~t~~~~ 310 (482)
-|..|+.++|.||+..... +. ...|.|++...++ .|+|.|+|.|||-+..+ -||.-..++..
T Consensus 77 GL~kifdEIldNAvDe~~r~g~-----~~~I~V~I~~~~g--sIsV~DnGRGIPV~iH~~eg~~~pElIft~LhAGgk-- 147 (1465)
T PLN03237 77 GLYKIFDEILVNAADNKQRDPK-----MDSLRVVIDVEQN--LISVYNNGDGVPVEIHQEEGVYVPEMIFGHLLTSSN-- 147 (1465)
T ss_pred hhhhhHHHHhhhhHhHHhhcCC-----CCEEEEEEEcCCC--EEEEEecCccccCCCCCCCCCccceEEEEeeecccc--
Confidence 4788899999999987632 22 2238888875544 58899999999987443 23444433322
Q ss_pred CCCCCCC-CCCCCcccCHHHHHHHHHHhCCEEEEEeecCCcEEEEEEee
Q psy14548 311 SKSDAHT-VPLAGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLK 358 (482)
Q Consensus 311 ~~~~~~~-~~~~G~GLGL~i~r~~~~~~gG~i~v~s~~g~Gt~f~i~lp 358 (482)
-++... -..+-.|+|.++|..+-+.+--++ . ....|-.|...+-
T Consensus 148 -Fdd~~yKvSGGlhGVGasvvNaLS~~f~Vev--~-Dg~~gk~y~Q~f~ 192 (1465)
T PLN03237 148 -YDDNEKKTTGGRNGYGAKLTNIFSTEFVIET--A-DGKRQKKYKQVFS 192 (1465)
T ss_pred -CCCCcceeeccccccCccccccccCeeEEEE--E-ECCCCeEEEEEEe
Confidence 122111 222347999999988777663322 2 1224566666654
No 95
>PHA02569 39 DNA topoisomerase II large subunit; Provisional
Probab=92.59 E-value=0.057 Score=58.91 Aligned_cols=90 Identities=20% Similarity=0.333 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCCCCCCEEEEEEecCceeEEEEEEcCCCCChhhHhh-----------hhhcccccCC
Q psy14548 240 HLYHMLFELFKNSMRATVEHHTDTDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVTDM-----------LFHYMYSTAP 308 (482)
Q Consensus 240 ~L~~il~NLl~NAik~t~~~~~~~~~~p~I~v~~~~~~~~~~i~V~D~G~GI~~~~~~~-----------if~~f~~t~~ 308 (482)
-|.+++.++|.||+.-...... +....|.|++. + -.|+|.|+|.|||-+..+. ||.-..++..
T Consensus 45 GL~hi~~EIldNavDe~~~~~~--g~~~~I~V~i~--d--gsisV~dnGrGIPv~~h~~~~g~~~~~~E~i~t~LhaGgk 118 (602)
T PHA02569 45 GLVKIIDEIIDNSVDEAIRTNF--KFANKIDVTIK--N--NQVTVSDNGRGIPQAMVTTPEGEEIPGPVAAWTRTKAGSN 118 (602)
T ss_pred cceeeeehhhhhhhhhhhccCC--CCCcEEEEEEc--C--CEEEEEECCCcccCCcccccccccccceEEEEEeeccccc
Confidence 4777888888888886544110 01223888876 2 2589999999999875421 2322222211
Q ss_pred CCCCCCCCCCCCCCcccCHHHHHHHHHHhC
Q psy14548 309 QPSKSDAHTVPLAGYGYGLPISRLYARYFH 338 (482)
Q Consensus 309 ~~~~~~~~~~~~~G~GLGL~i~r~~~~~~g 338 (482)
-+++-.-..+-.|+|.+.|..+-+.+-
T Consensus 119 ---Fd~~ykvSGGlhGVG~svvNaLS~~~~ 145 (602)
T PHA02569 119 ---FDDTNRVTGGMNGVGSSLTNFFSVLFI 145 (602)
T ss_pred ---cCCcceeeCCcCCccceeeeccchhhh
Confidence 121122223458999999998887764
No 96
>COG0187 GyrB Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair]
Probab=91.56 E-value=0.032 Score=59.65 Aligned_cols=89 Identities=20% Similarity=0.376 Sum_probs=57.5
Q ss_pred hHHHHHHHHHHHHHHHHhhhcCCCCCCCCCEEEEEEecCceeEEEEEEcCCCCChhhHhh--------hhhcccccCCCC
Q psy14548 239 SHLYHMLFELFKNSMRATVEHHTDTDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVTDM--------LFHYMYSTAPQP 310 (482)
Q Consensus 239 ~~L~~il~NLl~NAik~t~~~~~~~~~~p~I~v~~~~~~~~~~i~V~D~G~GI~~~~~~~--------if~~f~~t~~~~ 310 (482)
.-|++++.++++||+.-...|+.. .|.|++..+ =.|+|.|+|.|||-+..++ ||.....+...
T Consensus 35 ~GLhHlv~EVvDNsiDEalaG~~~-----~I~V~l~~d---~sisV~DnGRGIPvdiH~~~~~~~vEvI~T~LHAGGKF- 105 (635)
T COG0187 35 RGLHHLVWEVVDNSIDEALAGYAD-----RIDVTLHED---GSISVEDNGRGIPVDIHPKEKVSAVEVIFTVLHAGGKF- 105 (635)
T ss_pred CcceeeEeEeeechHhHHhhCcCc-----EEEEEEcCC---CeEEEEECCCCCccccCCCCCCCceEEEEEeeccCccc-
Confidence 678999999999999988777642 388887632 3578999999999887443 44433332211
Q ss_pred CCCCCCCCCCCCcccCHHHHHHHHHHh
Q psy14548 311 SKSDAHTVPLAGYGYGLPISRLYARYF 337 (482)
Q Consensus 311 ~~~~~~~~~~~G~GLGL~i~r~~~~~~ 337 (482)
.+++-.-+.+=.|.|.+.|..+-+.+
T Consensus 106 -d~~~YkvSGGLHGVG~SVVNALS~~l 131 (635)
T COG0187 106 -DNDSYKVSGGLHGVGVSVVNALSTWL 131 (635)
T ss_pred -CCCccEeecCCCccceEEEecccceE
Confidence 01111112233789988887765543
No 97
>PTZ00108 DNA topoisomerase 2-like protein; Provisional
Probab=91.50 E-value=0.16 Score=59.80 Aligned_cols=109 Identities=17% Similarity=0.338 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCCCCCCEEEEEEecCceeEEEEEEcCCCCChhhHh--------hhhhcccccCCCCC
Q psy14548 240 HLYHMLFELFKNSMRATVEHHTDTDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVTD--------MLFHYMYSTAPQPS 311 (482)
Q Consensus 240 ~L~~il~NLl~NAik~t~~~~~~~~~~p~I~v~~~~~~~~~~i~V~D~G~GI~~~~~~--------~if~~f~~t~~~~~ 311 (482)
-|..++.++|.||+....... ..+....|.|++..+.+ .|+|.|+|.|||-+..+ -||.-..++..
T Consensus 57 GL~ki~dEIldNAvDe~~r~~-~~g~~~~I~V~i~~d~g--~IsV~dnGrGIPv~~h~~~~~~~pElIft~L~aGgk--- 130 (1388)
T PTZ00108 57 GLYKIFDEILVNAADNKARDK-GGHRMTYIKVTIDEENG--EISVYNDGEGIPVQIHKEHKIYVPEMIFGHLLTSSN--- 130 (1388)
T ss_pred hhhhhHHHHhhhhhhhhcccC-CCCCccEEEEEEeccCC--eEEEEecCCcccCCCCCCCCCccceEEEEEeecccc---
Confidence 588899999999998764210 00112338888865433 58899999999986543 23444433322
Q ss_pred CCCCCCC-CCCCcccCHHHHHHHHHHhCCEEEEEeecC-CcEEEEEEee
Q psy14548 312 KSDAHTV-PLAGYGYGLPISRLYARYFHGDIMLLSCDG-LGTDAIIYLK 358 (482)
Q Consensus 312 ~~~~~~~-~~~G~GLGL~i~r~~~~~~gG~i~v~s~~g-~Gt~f~i~lp 358 (482)
-|+.... ..+-.|+|..+|..+-+.+- |+...+ .|-.|...+-
T Consensus 131 fdd~~yKvSGGlhGVGasvvNalS~~f~----Vev~r~~~gk~y~q~f~ 175 (1388)
T PTZ00108 131 YDDTEKRVTGGRNGFGAKLTNIFSTKFT----VECVDSKSGKKFKMTWT 175 (1388)
T ss_pred CCCCceeeecccccCCccccccccceEE----EEEEECCCCCEEEEEec
Confidence 1222112 22347999999988777653 333222 3666766664
No 98
>KOG1977|consensus
Probab=91.21 E-value=0.38 Score=51.98 Aligned_cols=59 Identities=27% Similarity=0.261 Sum_probs=48.9
Q ss_pred hHHHHHHHHHHHHHHHHhhhcCCCCCCCCCEEEEEEecCceeEEEEEEcCCCCChhhHhhhhhcccccCC
Q psy14548 239 SHLYHMLFELFKNSMRATVEHHTDTDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVTDMLFHYMYSTAP 308 (482)
Q Consensus 239 ~~L~~il~NLl~NAik~t~~~~~~~~~~p~I~v~~~~~~~~~~i~V~D~G~GI~~~~~~~if~~f~~t~~ 308 (482)
..|.|++.+|+-|++.+.. -.|.+..+-....+.|.|+|.|+..+++..+-+++|+++-
T Consensus 20 ~sla~~VeElv~NSiDA~A-----------t~V~v~V~~~t~sv~ViDdG~G~~rdDl~~lg~ry~TSK~ 78 (1142)
T KOG1977|consen 20 SSLAQCVEELVLNSIDAEA-----------TCVAVRVNMETFSVQVIDDGFGMGRDDLEKLGNRYFTSKC 78 (1142)
T ss_pred HHHHHHHHHHHhhccccCc-----------eEEEEEecCceeEEEEEecCCCccHHHHHHHHhhhhhhhc
Confidence 3588999999999998852 3445555666788999999999999999999999998763
No 99
>cd00082 HisKA Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-autophosphorylation by the catalytic domain of the histidine kinase. They subsequently transfer the phosphoryl group to the Asp acceptor residue of a response regulator protein. Two-component signalling systems, consisting of a histidine protein kinase that senses a signal input and a response regulator that mediates the output, are ancient and evolutionarily conserved signaling mechanisms in prokaryotes and eukaryotes.
Probab=91.04 E-value=1.5 Score=31.17 Aligned_cols=62 Identities=13% Similarity=0.059 Sum_probs=43.8
Q ss_pred hHHHHHHHHHHHHHhhchhHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhhHHHHHHHHHHhh
Q psy14548 102 TLDKFCKALVKIRNRHSDVVQTMAQGVMELKDSHDVDHQTENSIQYFLDRFYMSRISIRMLINQHTLLF 170 (482)
Q Consensus 102 ~~~~f~~~l~~~l~~~~~~i~~la~g~~e~~~~~~~~~~~~e~~~~~Ld~i~~sri~~r~Li~~~l~L~ 170 (482)
...++...++|++++|.+.+...++.+.+-. ...+....+++.+..+...+..++++++.+.
T Consensus 3 ~~~~~~~~~~hel~~pl~~i~~~~~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 64 (65)
T cd00082 3 AKGEFLANVSHELRTPLTAIRGALELLEEEL-------LDDEEQREYLERIREEAERLLRLINDLLDLS 64 (65)
T ss_pred HHHHHHHHHhHHhcchHHHHHHHHHHHHhcc-------cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3567899999999999999888776654311 1245677788888876666666777766543
No 100
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=90.98 E-value=7.5 Score=45.12 Aligned_cols=41 Identities=27% Similarity=0.329 Sum_probs=37.8
Q ss_pred cCCCCcccchhhhhcccCCceeEEecccccccEEEEecccC
Q psy14548 423 AGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLKALS 463 (482)
Q Consensus 423 a~~g~glp~~~~~a~~~~~~~~~~~~~g~g~d~~~~~~~~~ 463 (482)
.|.|+||.+++..++.+||.+.+.+-.|.|+.+.+.++--.
T Consensus 645 ~g~GLGL~i~~~l~~~~gG~i~~~s~~~~Gt~f~~~lp~~~ 685 (968)
T TIGR02956 645 GGTGLGLAISQRLVEAMDGELGVESELGVGSCFWFTLPLTR 685 (968)
T ss_pred CCccHHHHHHHHHHHHcCCEEEEEecCCCcEEEEEEEEcCC
Confidence 57899999999999999999999999999999999998543
No 101
>smart00388 HisKA His Kinase A (phosphoacceptor) domain. Dimerisation and phosphoacceptor domain of histidine kinases.
Probab=90.15 E-value=1.7 Score=31.14 Aligned_cols=61 Identities=15% Similarity=0.107 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHhhchhHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhhHHHHHHHHHHhhc
Q psy14548 103 LDKFCKALVKIRNRHSDVVQTMAQGVMELKDSHDVDHQTENSIQYFLDRFYMSRISIRMLINQHTLLFG 171 (482)
Q Consensus 103 ~~~f~~~l~~~l~~~~~~i~~la~g~~e~~~~~~~~~~~~e~~~~~Ld~i~~sri~~r~Li~~~l~L~~ 171 (482)
..+|...++|.+++|+..+...++.+.+ . ..+.+. ..+++.+..+...+..++++++.+.+
T Consensus 2 ~~~~~~~i~Hel~~pl~~i~~~~~~l~~--~-----~~~~~~-~~~~~~~~~~~~~~~~~v~~l~~~~~ 62 (66)
T smart00388 2 KREFLANLSHELRTPLTAIRGYLELLED--T-----ELSEEQ-REYLETILRSAERLLRLINDLLDLSR 62 (66)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHh--C-----CCChHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578999999999999999888765544 1 112333 77888888776666777777776653
No 102
>KOG1978|consensus
Probab=89.87 E-value=0.47 Score=51.31 Aligned_cols=57 Identities=25% Similarity=0.265 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCCCCCCEEEEEEecCceeEEEEEEcCCCCChhhHhhhhhcccccC
Q psy14548 241 LYHMLFELFKNSMRATVEHHTDTDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVTDMLFHYMYSTA 307 (482)
Q Consensus 241 L~~il~NLl~NAik~t~~~~~~~~~~p~I~v~~~~~~~~~~i~V~D~G~GI~~~~~~~if~~f~~t~ 307 (482)
+.-++.+|++|++++.... |.|.+..- +.=.|+|+|||.||++.+.+-+-..+++++
T Consensus 21 l~sAVKELvENSiDAGAT~---------I~I~~kdy-G~d~IEV~DNG~GI~~~n~~~l~lkh~TSK 77 (672)
T KOG1978|consen 21 LVSAVKELVENSIDAGATA---------IDIKVKDY-GSDSIEVSDNGSGISATDFEGLALKHTTSK 77 (672)
T ss_pred HHHHHHHHHhcCcccCCce---------eeEecCCC-CcceEEEecCCCCCCccchhhhhhhhhhhc
Confidence 3478999999999986432 67766543 344699999999999998887777777655
No 103
>PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins. The fold of this domain consists of two layers, alpha/beta, which contains an 8-stranded mixed beta-sheet. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0005524 ATP binding; PDB: 3JZ3_A 3DGE_A 2C2A_A 2BU5_A 2BU8_A 2BU6_A 2BU7_A 2BU2_A 2BTZ_A 3K99_D ....
Probab=89.59 E-value=0.23 Score=41.20 Aligned_cols=42 Identities=29% Similarity=0.432 Sum_probs=38.4
Q ss_pred CcccCCCCcccchhhhhcccCCceeEEecccccccEEEEecc
Q psy14548 420 VPLAGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLKA 461 (482)
Q Consensus 420 ~pla~~g~glp~~~~~a~~~~~~~~~~~~~g~g~d~~~~~~~ 461 (482)
....|.|+||.+++.+++.++|.+.+.+-.+-|+.+.++++.
T Consensus 69 ~~~~g~GlGL~~~~~~~~~~~g~l~~~~~~~~gt~v~~~~p~ 110 (111)
T PF02518_consen 69 TSISGHGLGLYIVKQIAERHGGELTIESSEGGGTTVTFTLPL 110 (111)
T ss_dssp GGSSSSSHHHHHHHHHHHHTTEEEEEEEETTTEEEEEEEEEG
T ss_pred cccCCCChHHHHHHHHHHHCCCEEEEEEcCCCcEEEEEEEEC
Confidence 456679999999999999999999999999999999999874
No 104
>PLN03128 DNA topoisomerase 2; Provisional
Probab=89.08 E-value=0.41 Score=55.82 Aligned_cols=105 Identities=16% Similarity=0.353 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHHHHhhh-cCCCCCCCCCEEEEEEecCceeEEEEEEcCCCCChhhHh--------hhhhcccccCCCC
Q psy14548 240 HLYHMLFELFKNSMRATVE-HHTDTDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVTD--------MLFHYMYSTAPQP 310 (482)
Q Consensus 240 ~L~~il~NLl~NAik~t~~-~~~~~~~~p~I~v~~~~~~~~~~i~V~D~G~GI~~~~~~--------~if~~f~~t~~~~ 310 (482)
-|..++.++|.||+.-... +. ...|.|++..+++ .|+|.|+|.|||-+..+ -||.-..++..
T Consensus 52 GL~ki~dEIldNAvDe~~~~g~-----~~~I~V~i~~~dg--sIsV~DnGrGIPv~ih~~~g~~~~ElIft~LhaGgk-- 122 (1135)
T PLN03128 52 GLYKIFDEILVNAADNKQRDPS-----MDSLKVDIDVEQN--TISVYNNGKGIPVEIHKEEGVYVPELIFGHLLTSSN-- 122 (1135)
T ss_pred hHHHHHHHHHHHHHHHhhhcCC-----CcEEEEEEEcCCC--eEEEEecCccccCCCCCCCCCccceEEEEeeccccc--
Confidence 4888999999999987632 22 1238888875444 58899999999986433 23333333221
Q ss_pred CCCCCCCC-CCCCcccCHHHHHHHHHHhCCEEEEEeec-CCcEEEEEEee
Q psy14548 311 SKSDAHTV-PLAGYGYGLPISRLYARYFHGDIMLLSCD-GLGTDAIIYLK 358 (482)
Q Consensus 311 ~~~~~~~~-~~~G~GLGL~i~r~~~~~~gG~i~v~s~~-g~Gt~f~i~lp 358 (482)
-|+.... ..+-.|+|.++|..+.+.+ .|+... ..|-.+...+-
T Consensus 123 -Fdd~~ykvSGGlhGvGasvvNaLS~~f----~Vev~d~r~gk~y~q~f~ 167 (1135)
T PLN03128 123 -FDDNEKKTTGGRNGYGAKLANIFSTEF----TVETADGNRGKKYKQVFT 167 (1135)
T ss_pred -cCCccceeeccccCCCCeEEEeecCeE----EEEEEECCCCeEEEEEeC
Confidence 1221111 2233699999887766654 344332 34666666654
No 105
>PTZ00109 DNA gyrase subunit b; Provisional
Probab=84.49 E-value=0.17 Score=56.83 Aligned_cols=52 Identities=31% Similarity=0.495 Sum_probs=38.8
Q ss_pred hhHHHHHHHHHHHHHHHHhhhcCCCCCCCCCEEEEEEecCceeEEEEEEcCCCCChhhHh
Q psy14548 238 PSHLYHMLFELFKNSMRATVEHHTDTDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVTD 297 (482)
Q Consensus 238 ~~~L~~il~NLl~NAik~t~~~~~~~~~~p~I~v~~~~~~~~~~i~V~D~G~GI~~~~~~ 297 (482)
..-|++++.++|+||+.-...+.. ..|.|++..+ -.|+|+|+|.|||-+..+
T Consensus 127 ~~GLhhLv~EIlDNSVDE~laG~~-----~~I~V~i~~D---gsItV~DnGRGIPvd~h~ 178 (903)
T PTZ00109 127 EKGLHQLLFEILDNSVDEYLAGEC-----NKITVVLHKD---GSVEISDNGRGIPCDVSE 178 (903)
T ss_pred CCcceEEEEEEeeccchhhccCCC-----cEEEEEEcCC---CeEEEEeCCccccccccc
Confidence 456888899999999986655543 2388888643 268999999999986544
No 106
>PRK09303 adaptive-response sensory kinase; Validated
Probab=84.30 E-value=52 Score=33.69 Aligned_cols=39 Identities=33% Similarity=0.450 Sum_probs=36.5
Q ss_pred cCCCCcccchhhhhcccCCceeEEecccccccEEEEecc
Q psy14548 423 AGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLKA 461 (482)
Q Consensus 423 a~~g~glp~~~~~a~~~~~~~~~~~~~g~g~d~~~~~~~ 461 (482)
.|.|+||.+++..++..||.+.+.+-+|-|+.+.++++.
T Consensus 339 ~G~GLGL~i~~~iv~~~gG~i~v~s~~~~Gt~f~i~lP~ 377 (380)
T PRK09303 339 EGYGIGLSVCRRIVRVHYGQIWVDSEPGQGSCFHFTLPV 377 (380)
T ss_pred CcccccHHHHHHHHHHcCCEEEEEecCCCccEEEEEEec
Confidence 489999999999999999999999999999999998864
No 107
>KOG0020|consensus
Probab=76.46 E-value=3.8 Score=42.83 Aligned_cols=56 Identities=21% Similarity=0.203 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHhhhcC-------CCCCCCCCEEEEEEecCceeEEEEEEcCCCCChhhHhh
Q psy14548 243 HMLFELFKNSMRATVEHH-------TDTDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVTDM 298 (482)
Q Consensus 243 ~il~NLl~NAik~t~~~~-------~~~~~~p~I~v~~~~~~~~~~i~V~D~G~GI~~~~~~~ 298 (482)
.-|.+||+||-.+...-. ......+...|.+..+...-.+.|.|+|+||..+++-+
T Consensus 98 IFLRELISNASDAlDKIRllaLtd~~~L~~~~el~ikIK~Dke~klLhi~DtGiGMT~edLi~ 160 (785)
T KOG0020|consen 98 IFLRELISNASDALDKIRLLALTDKDVLGETEELEIKIKADKEKKLLHITDTGIGMTREDLIK 160 (785)
T ss_pred HHHHHHHhhhhhhhhheeeeeccChhHhCcCcceEEEEeechhhCeeeEecccCCccHHHHHH
Confidence 346789999988753211 11123455778887777777899999999999987644
No 108
>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=75.48 E-value=2.4 Score=41.11 Aligned_cols=42 Identities=31% Similarity=0.356 Sum_probs=38.7
Q ss_pred CCCCcccchhhhhcccCCceeEEecccccccEEEEecccCcc
Q psy14548 424 GYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLKALSNE 465 (482)
Q Consensus 424 ~~g~glp~~~~~a~~~~~~~~~~~~~g~g~d~~~~~~~~~~~ 465 (482)
|.|.||.+++.+.++.||.+.+.+-+|.|+.++++++.....
T Consensus 292 g~GlGL~i~~~~~~~~~g~i~~~~~~~~Gt~~~i~lP~~~~~ 333 (336)
T COG0642 292 GTGLGLAIVKRIVELHGGTISVESEPGKGTTFTIRLPLAPAA 333 (336)
T ss_pred CCCccHHHHHHHHHHcCCEEEEEecCCCceEEEEEEeccccc
Confidence 899999999999999999999999999999999999987654
No 109
>KOG0019|consensus
Probab=74.35 E-value=5 Score=43.09 Aligned_cols=95 Identities=19% Similarity=0.277 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHhhhcCC-----CCCCCCCEEEEEEecCceeEEEEEEcCCCCChhhHhhhhhcccccCCCC----CC
Q psy14548 242 YHMLFELFKNSMRATVEHHT-----DTDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVTDMLFHYMYSTAPQP----SK 312 (482)
Q Consensus 242 ~~il~NLl~NAik~t~~~~~-----~~~~~p~I~v~~~~~~~~~~i~V~D~G~GI~~~~~~~if~~f~~t~~~~----~~ 312 (482)
+.-+.+|++||-.+-..-.. .....++..|.+..+.+.-+++|.|+|+||..+++-.-...--++.... -.
T Consensus 59 EvFlRELISNaSDAldKiRy~~lt~~~~~~~~l~I~i~~nk~~~tlti~DtGIGMTk~dLvnnLGTIAkSGtK~Fmealk 138 (656)
T KOG0019|consen 59 EVFLRELISNASDALEKLRYLELKGDEKALPELEIRIITNKDKRTITIQDTGIGMTKEDLVNNLGTIAKSGSKAFLEALK 138 (656)
T ss_pred HHHHHhhhccccchHHHHHHHhhcCccccccceeEEeccCCCcceEEEEecCCCcCHHHHHhhhhhhhhcccHHHHHHHH
Confidence 34466788887655432110 0012567888888888889999999999999988754332211110000 00
Q ss_pred C-CCCCCCCCCcccCHHHHHHHHHH
Q psy14548 313 S-DAHTVPLAGYGYGLPISRLYARY 336 (482)
Q Consensus 313 ~-~~~~~~~~G~GLGL~i~r~~~~~ 336 (482)
+ .....-.+..|.|.+-+-..++.
T Consensus 139 ea~ad~~~IGQFGvGFYSaylVAdk 163 (656)
T KOG0019|consen 139 EAEAESNLIGQFGVGFYSAFMVADR 163 (656)
T ss_pred hcccchhhhhhcccchhhhhhhhhe
Confidence 0 01112235689998877666654
No 110
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL. NifL is a modulator of the nitrogen fixation positive regulator protein NifA, and is therefore a negative regulator. It binds NifA. NifA and NifL are encoded by adjacent genes.
Probab=67.54 E-value=4.1 Score=42.61 Aligned_cols=39 Identities=21% Similarity=0.174 Sum_probs=36.9
Q ss_pred ccCCCCcccchhhhhcccCCceeEEecccccccEEEEec
Q psy14548 422 LAGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLK 460 (482)
Q Consensus 422 la~~g~glp~~~~~a~~~~~~~~~~~~~g~g~d~~~~~~ 460 (482)
..|.|+||.+++..++.+||.+.+-+-+|=|+.+.+.|+
T Consensus 455 ~~G~GlGL~i~~~iv~~~gG~i~~~s~~~~G~~f~i~lp 493 (494)
T TIGR02938 455 RKHIGMGLSVAQEIVADHGGIIDLDDDYSEGCRIIVEFR 493 (494)
T ss_pred CCCCcccHHHHHHHHHHcCCEEEEEECCCCCEEEEEEec
Confidence 568999999999999999999999999999999999886
No 111
>PF10090 DUF2328: Uncharacterized protein conserved in bacteria (DUF2328); InterPro: IPR018762 Members of this family of hypothetical bacterial proteins have no known function.
Probab=66.12 E-value=1.1e+02 Score=28.13 Aligned_cols=91 Identities=16% Similarity=0.116 Sum_probs=62.0
Q ss_pred hhHHHHHHHHHHHHHHHHhhhcCCCCCCCCCEEEEEEecCceeEEEEEEcCCCCChhhHhhhhhcccccCCCCCCCCCCC
Q psy14548 238 PSHLYHMLFELFKNSMRATVEHHTDTDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVTDMLFHYMYSTAPQPSKSDAHT 317 (482)
Q Consensus 238 ~~~L~~il~NLl~NAik~t~~~~~~~~~~p~I~v~~~~~~~~~~i~V~D~G~GI~~~~~~~if~~f~~t~~~~~~~~~~~ 317 (482)
+...-+++.|++-=|..+.+.|+. |+|.+....+...++|.=+|..+..+ +.+++-+-...+ .
T Consensus 83 ~k~~vklllnl~l~a~~alprGG~-------i~V~~~~~~~~~~~~v~a~G~~~~~~--~~~~~~L~g~~~--------~ 145 (182)
T PF10090_consen 83 PKPEVKLLLNLLLCAEDALPRGGE-------ITVSIEGSEGDGGWRVRAEGPRARLD--PDLWAALAGEDP--------E 145 (182)
T ss_pred CHHHHHHHHHHHHHHHhhcCCCCE-------EEEEEeccCCCceEEEEEeccccCCC--HHHHHHhcCCCC--------C
Confidence 344558899999999999988876 99988877777888888888765443 233333322111 1
Q ss_pred CCCCCcccCHHHHHHHHHHhCCEEEEEe
Q psy14548 318 VPLAGYGYGLPISRLYARYFHGDIMLLS 345 (482)
Q Consensus 318 ~~~~G~GLGL~i~r~~~~~~gG~i~v~s 345 (482)
........=-++...+++..|++|.+..
T Consensus 146 ~~l~~~~VQ~~~~~~la~~~G~~l~~~~ 173 (182)
T PF10090_consen 146 EDLDPRNVQFYLLPLLAREAGRRLSVEA 173 (182)
T ss_pred CCCCHHhHHHHHHHHHHHHcCCeEEEEe
Confidence 1223334445788899999999999865
No 112
>PF08635 ox_reductase_C: Putative oxidoreductase C terminal; InterPro: IPR013944 This is the C terminus of putative oxidoreductases.
Probab=65.31 E-value=2.7 Score=36.08 Aligned_cols=46 Identities=20% Similarity=0.259 Sum_probs=35.9
Q ss_pred hhcccCCceeEEecccccccEEEEecccCc--------cccccccchhcccccc
Q psy14548 435 YARYFHGDIMLLSCDGLGTDAIIYLKALSN--------EANELLPIFNKTSSKF 480 (482)
Q Consensus 435 ~a~~~~~~~~~~~~~g~g~d~~~~~~~~~~--------~~~~~~~~~~~~~~~~ 480 (482)
.+|||||++.+-++-..-.+.|-..-+|+. ..+.+||-++.+.||+
T Consensus 59 L~RYfgGeVdldtV~a~sve~~e~~g~LskipvdEs~Ip~e~RiPR~T~A~Wky 112 (142)
T PF08635_consen 59 LSRYFGGEVDLDTVQAHSVEWDEPPGKLSKIPVDESKIPPENRIPRATSATWKY 112 (142)
T ss_pred HHHHhcCceeeeeEEEEeccccCCCCcCCCCCcCcccCChhhcCcceeeeEEEe
Confidence 579999999999999887777766555542 2356889999999985
No 113
>PRK11100 sensory histidine kinase CreC; Provisional
Probab=63.80 E-value=4.8 Score=42.09 Aligned_cols=39 Identities=28% Similarity=0.313 Sum_probs=36.4
Q ss_pred cCCCCcccchhhhhcccCCceeEEecccccccEEEEecc
Q psy14548 423 AGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLKA 461 (482)
Q Consensus 423 a~~g~glp~~~~~a~~~~~~~~~~~~~g~g~d~~~~~~~ 461 (482)
.|.|+||-+++..++..||.+.+.+-+|.|+.+.+.++.
T Consensus 435 ~~~GlGL~i~~~~~~~~~G~i~i~s~~~~Gt~v~i~lp~ 473 (475)
T PRK11100 435 KSTGLGLAFVREVARLHGGEVTLRNRPEGGVLATLTLPR 473 (475)
T ss_pred CCcchhHHHHHHHHHHCCCEEEEEEcCCCeEEEEEEeeC
Confidence 478999999999999999999999999999999999875
No 114
>PRK10755 sensor protein BasS/PmrB; Provisional
Probab=59.35 E-value=6.9 Score=39.47 Aligned_cols=41 Identities=29% Similarity=0.486 Sum_probs=37.2
Q ss_pred cCCCCcccchhhhhcccCCceeEEeccc-ccccEEEEecccC
Q psy14548 423 AGYGYGLPISRLYARYFHGDIMLLSCDG-LGTDAIIYLKALS 463 (482)
Q Consensus 423 a~~g~glp~~~~~a~~~~~~~~~~~~~g-~g~d~~~~~~~~~ 463 (482)
.|.|+||.+++..++..||.+.+.|-.| -|+.+.+.+++-.
T Consensus 311 ~g~GlGL~i~~~i~~~~gg~i~i~s~~~~~Gt~~~i~~p~~~ 352 (356)
T PRK10755 311 GGIGLGLSIVSRITQLHHGQFFLQNRQERSGTRAWVWLPKAQ 352 (356)
T ss_pred CCcCHHHHHHHHHHHHCCCEEEEEECCCCCeEEEEEEecCCC
Confidence 3689999999999999999999999998 9999999998744
No 115
>KOG0355|consensus
Probab=58.90 E-value=17 Score=40.57 Aligned_cols=51 Identities=20% Similarity=0.414 Sum_probs=36.2
Q ss_pred hHHHHHHHHHHHHHHHHhhhcCCCCCCCCCEEEEEEecCceeEEEEEEcCCCCChhhH
Q psy14548 239 SHLYHMLFELFKNSMRATVEHHTDTDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVT 296 (482)
Q Consensus 239 ~~L~~il~NLl~NAik~t~~~~~~~~~~p~I~v~~~~~~~~~~i~V~D~G~GI~~~~~ 296 (482)
.-|++|+.+++.||.. - ... .....|.+.+..+ .-.|.|.|+|.|||-+..
T Consensus 52 pGl~ki~dEilvNaad-k-~rd---~~m~~i~v~i~~e--~~~isv~nnGkGIPv~~H 102 (842)
T KOG0355|consen 52 PGLYKIFDEILVNAAD-K-QRD---PKMNTIKVTIDKE--KNEISVYNNGKGIPVTIH 102 (842)
T ss_pred CcHHHHHHHHhhcccc-c-ccC---CCcceeEEEEccC--CCEEEEEeCCCcceeeec
Confidence 3589999999999988 2 222 1223366666544 446889999999998754
No 116
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=58.62 E-value=7.6 Score=44.74 Aligned_cols=41 Identities=29% Similarity=0.476 Sum_probs=38.1
Q ss_pred cCCCCcccchhhhhcccCCceeEEecccccccEEEEecccC
Q psy14548 423 AGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLKALS 463 (482)
Q Consensus 423 a~~g~glp~~~~~a~~~~~~~~~~~~~g~g~d~~~~~~~~~ 463 (482)
.|.|+||.+++..++.+||.+.+-|-.|-|+.+.++|+...
T Consensus 576 ~g~GLGL~i~~~~~~~~gG~i~i~s~~~~Gt~f~i~lp~~~ 616 (921)
T PRK15347 576 QGTGLGLTIASSLAKMMGGELTLFSTPGVGSCFSLVLPLNE 616 (921)
T ss_pred CCCchHHHHHHHHHHHcCCEEEEEecCCCceEEEEEEECCC
Confidence 58999999999999999999999999999999999998644
No 117
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=58.60 E-value=6.7 Score=45.26 Aligned_cols=40 Identities=30% Similarity=0.397 Sum_probs=37.8
Q ss_pred cCCCCcccchhhhhcccCCceeEEecccccccEEEEeccc
Q psy14548 423 AGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLKAL 462 (482)
Q Consensus 423 a~~g~glp~~~~~a~~~~~~~~~~~~~g~g~d~~~~~~~~ 462 (482)
.|.|.||.+++..++..||.+.+.|-+|-|+.+.++|+..
T Consensus 634 ~GtGLGLaI~k~Lve~~GG~I~v~S~~g~GT~F~I~LPl~ 673 (894)
T PRK10618 634 KASGLTFFLCNQLCRKLGGHLTIKSREGLGTRYSIHLKML 673 (894)
T ss_pred CCcChhHHHHHHHHHHcCCEEEEEECCCCcEEEEEEEEcc
Confidence 4899999999999999999999999999999999999974
No 118
>PRK11006 phoR phosphate regulon sensor protein; Provisional
Probab=57.55 E-value=7 Score=40.76 Aligned_cols=39 Identities=26% Similarity=0.264 Sum_probs=36.6
Q ss_pred cCCCCcccchhhhhcccCCceeEEecccccccEEEEecc
Q psy14548 423 AGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLKA 461 (482)
Q Consensus 423 a~~g~glp~~~~~a~~~~~~~~~~~~~g~g~d~~~~~~~ 461 (482)
.|.|+||.+++..++..||.+.+-+-.|-|+.+.++++.
T Consensus 385 ~G~GLGL~ivk~iv~~~gG~i~i~s~~~~Gt~f~i~lP~ 423 (430)
T PRK11006 385 GGSGLGLAIVKHALSHHDSRLEIESEVGKGTRFSFVLPE 423 (430)
T ss_pred CCCchHHHHHHHHHHHCCCEEEEEecCCCceEEEEEech
Confidence 578999999999999999999999999999999999885
No 119
>PRK10815 sensor protein PhoQ; Provisional
Probab=55.68 E-value=9.2 Score=40.84 Aligned_cols=43 Identities=19% Similarity=0.261 Sum_probs=38.9
Q ss_pred cCCCCcccchhhhhcccCCceeEEecccccccEEEEecccCcc
Q psy14548 423 AGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLKALSNE 465 (482)
Q Consensus 423 a~~g~glp~~~~~a~~~~~~~~~~~~~g~g~d~~~~~~~~~~~ 465 (482)
.|.|+||.+++..++..||.+.+.+-+|-|+.+-+.+++....
T Consensus 440 ~G~GLGL~Ivk~iv~~~gG~i~v~s~~~~Gt~f~i~lp~~~~~ 482 (485)
T PRK10815 440 PGQGLGLSVAREITEQYEGKISAGDSPLGGARMEVIFGRQHST 482 (485)
T ss_pred CCcchhHHHHHHHHHHcCCEEEEEECCCCEEEEEEEEcCCCCC
Confidence 3789999999999999999999999999999999999986443
No 120
>COG4574 Eco Serine protease inhibitor ecotin [General function prediction only]
Probab=54.40 E-value=8.2 Score=33.05 Aligned_cols=32 Identities=19% Similarity=0.264 Sum_probs=23.8
Q ss_pred ccchhhhhcccCCceeEEecccccccEEEEecc
Q psy14548 429 LPISRLYARYFHGDIMLLSCDGLGTDAIIYLKA 461 (482)
Q Consensus 429 lp~~~~~a~~~~~~~~~~~~~g~g~d~~~~~~~ 461 (482)
|-..|-.- -|||.|+-..++|||-|-|+.-+-
T Consensus 66 l~~DCNr~-~lGG~LEtkTLeGWGy~Yyv~DkV 97 (162)
T COG4574 66 LEVDCNRH-RLGGKLETKTLEGWGYDYYVFDKV 97 (162)
T ss_pred hhcchhhh-hcCceeccceeccccceeEEEecc
Confidence 33334333 369999999999999999886554
No 121
>TIGR01386 cztS_silS_copS heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (Pfam:PF00512) and a domain found in bacterial signal proteins (Pfam:PF00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.
Probab=52.55 E-value=9.8 Score=39.53 Aligned_cols=38 Identities=26% Similarity=0.188 Sum_probs=34.9
Q ss_pred ccCCCCcccchhhhhcccCCceeEEecccccccEEEEec
Q psy14548 422 LAGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLK 460 (482)
Q Consensus 422 la~~g~glp~~~~~a~~~~~~~~~~~~~g~g~d~~~~~~ 460 (482)
-.|.|+||.+.+-.++..||.+.+.+ +|.|+.+.+.++
T Consensus 420 ~~g~GlGL~i~~~~~~~~~G~~~~~~-~~~G~~~~~~~P 457 (457)
T TIGR01386 420 GEGTGLGLAIVRSIMEAHGGRASAES-PDGKTRFILRFP 457 (457)
T ss_pred CCCccccHHHHHHHHHHCCCEEEEEe-CCCceEEEEecC
Confidence 45789999999999999999999999 999999999875
No 122
>PRK10364 sensor protein ZraS; Provisional
Probab=51.92 E-value=13 Score=39.02 Aligned_cols=40 Identities=25% Similarity=0.381 Sum_probs=37.3
Q ss_pred CCCCcccchhhhhcccCCceeEEecccccccEEEEecccC
Q psy14548 424 GYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLKALS 463 (482)
Q Consensus 424 ~~g~glp~~~~~a~~~~~~~~~~~~~g~g~d~~~~~~~~~ 463 (482)
|.|+||.+++..++..||.+.+.+-+|-|+.+.++++.-.
T Consensus 411 g~GlGL~iv~~~v~~~gG~i~i~s~~~~Gt~f~i~lP~~~ 450 (457)
T PRK10364 411 GTGLGLAVVHNIVEQHGGTIQVASQEGKGATFTLWLPVNI 450 (457)
T ss_pred CCcccHHHHHHHHHHCCCEEEEEeCCCCcEEEEEEecCCC
Confidence 7899999999999999999999999999999999998743
No 123
>COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms]
Probab=51.22 E-value=47 Score=33.17 Aligned_cols=40 Identities=25% Similarity=0.262 Sum_probs=32.9
Q ss_pred cCCCCcccchhhhhcccCCceeEEecccccccEEEEecccC
Q psy14548 423 AGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLKALS 463 (482)
Q Consensus 423 a~~g~glp~~~~~a~~~~~~~~~~~~~g~g~d~~~~~~~~~ 463 (482)
-|.|.||++..-....-||-++.-|-+|- |.+-++++-.-
T Consensus 317 ~GsGLGLala~~li~qH~G~Ie~~S~Pg~-T~FrvllP~~~ 356 (363)
T COG3852 317 GGTGLGLALAQNLIDQHGGKIEFDSWPGR-TVFRVLLPIRK 356 (363)
T ss_pred CCccccHHHHHHHHHhcCCEEEEeccCCc-eEEEEEeeccc
Confidence 46889999999999888998888888886 88877776543
No 124
>smart00387 HATPase_c Histidine kinase-like ATPases. Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.
Probab=50.65 E-value=14 Score=29.04 Aligned_cols=39 Identities=33% Similarity=0.441 Sum_probs=33.1
Q ss_pred ccCCCCcccchhhhhcccCCceeEEecccccccEEEEec
Q psy14548 422 LAGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLK 460 (482)
Q Consensus 422 la~~g~glp~~~~~a~~~~~~~~~~~~~g~g~d~~~~~~ 460 (482)
..+.|+||.+++..++.++|.+.+..-++-|+.+.++++
T Consensus 71 ~~~~g~gl~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~ 109 (111)
T smart00387 71 IGGTGLGLSIVKKLVELHGGEISVESEPGGGTTFTITLP 109 (111)
T ss_pred CCcccccHHHHHHHHHHcCCEEEEEecCCCcEEEEEEee
Confidence 445789999999999999999999888787887777665
No 125
>PRK11086 sensory histidine kinase DcuS; Provisional
Probab=50.03 E-value=12 Score=39.89 Aligned_cols=41 Identities=22% Similarity=0.284 Sum_probs=37.5
Q ss_pred cCCCCcccchhhhhcccCCceeEEecccccccEEEEecccC
Q psy14548 423 AGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLKALS 463 (482)
Q Consensus 423 a~~g~glp~~~~~a~~~~~~~~~~~~~g~g~d~~~~~~~~~ 463 (482)
.|.|+||.+++..++..||.+.+.+-+|-|+.+.++|+.-.
T Consensus 497 ~g~GlGL~iv~~iv~~~~G~i~v~s~~~~G~~f~i~lP~~~ 537 (542)
T PRK11086 497 SNRGVGLYLVKQSVENLGGSIAVESEPGVGTQFFVQIPWDG 537 (542)
T ss_pred CCCcCcHHHHHHHHHHcCCEEEEEeCCCCcEEEEEEEeCCC
Confidence 47899999999999999999999999999999999998643
No 126
>PRK11360 sensory histidine kinase AtoS; Provisional
Probab=49.76 E-value=12 Score=40.25 Aligned_cols=41 Identities=34% Similarity=0.466 Sum_probs=37.5
Q ss_pred cCCCCcccchhhhhcccCCceeEEecccccccEEEEecccC
Q psy14548 423 AGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLKALS 463 (482)
Q Consensus 423 a~~g~glp~~~~~a~~~~~~~~~~~~~g~g~d~~~~~~~~~ 463 (482)
.|.|+||.+.+..++.+||.+.+.+-.|-|+.+.++++.-.
T Consensus 563 ~g~glGL~~~~~~~~~~~G~i~~~s~~~~Gt~~~i~lp~~~ 603 (607)
T PRK11360 563 KGTGLGLALSQRIINAHGGDIEVESEPGVGTTFTLYLPINP 603 (607)
T ss_pred CCCchhHHHHHHHHHHcCCEEEEEEcCCCceEEEEEecCCC
Confidence 47899999999999999999999999999999999998643
No 127
>PRK13557 histidine kinase; Provisional
Probab=48.01 E-value=14 Score=39.31 Aligned_cols=40 Identities=30% Similarity=0.428 Sum_probs=37.2
Q ss_pred cCCCCcccchhhhhcccCCceeEEecccccccEEEEeccc
Q psy14548 423 AGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLKAL 462 (482)
Q Consensus 423 a~~g~glp~~~~~a~~~~~~~~~~~~~g~g~d~~~~~~~~ 462 (482)
.|.|+||.+++..++..||.+.+.+-+|-|+.+.++|+.-
T Consensus 356 ~g~GlGL~i~~~~v~~~gG~i~~~s~~~~G~~f~i~lP~~ 395 (540)
T PRK13557 356 KGTGLGLSMVYGFAKQSGGAVRIYSEVGEGTTVRLYFPAS 395 (540)
T ss_pred CCCCccHHHHHHHHHHCCCEEEEEecCCCceEEEEEeeCC
Confidence 4899999999999999999999999999999999999863
No 128
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=46.49 E-value=14 Score=42.54 Aligned_cols=40 Identities=28% Similarity=0.342 Sum_probs=37.2
Q ss_pred cCCCCcccchhhhhcccCCceeEEecccccccEEEEeccc
Q psy14548 423 AGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLKAL 462 (482)
Q Consensus 423 a~~g~glp~~~~~a~~~~~~~~~~~~~g~g~d~~~~~~~~ 462 (482)
.|.|+||.+++..++..||.+.+.+-.|-|+.+.+.++-.
T Consensus 624 ~g~GLGL~i~~~l~~~~gG~i~v~s~~~~Gt~f~i~lP~~ 663 (914)
T PRK11466 624 GGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLPLR 663 (914)
T ss_pred CCCcccHHHHHHHHHHcCCEEEEEecCCCCeEEEEEEEcc
Confidence 4889999999999999999999999999999999999853
No 129
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=46.47 E-value=13 Score=42.49 Aligned_cols=41 Identities=32% Similarity=0.318 Sum_probs=38.1
Q ss_pred cCCCCcccchhhhhcccCCceeEEecccccccEEEEecccC
Q psy14548 423 AGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLKALS 463 (482)
Q Consensus 423 a~~g~glp~~~~~a~~~~~~~~~~~~~g~g~d~~~~~~~~~ 463 (482)
.|.|+||.+++..++..||.+.+.+-.|-|+.+.++|+.-.
T Consensus 637 ~G~GLGL~i~~~iv~~~gG~i~v~s~~g~Gt~f~i~LP~~~ 677 (828)
T PRK13837 637 GGTGLGLATVHGIVSAHAGYIDVQSTVGRGTRFDVYLPPSS 677 (828)
T ss_pred CCCcchHHHHHHHHHHCCCEEEEEecCCCeEEEEEEEeCCC
Confidence 68999999999999999999999999999999999998643
No 130
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional
Probab=45.94 E-value=16 Score=36.58 Aligned_cols=37 Identities=35% Similarity=0.518 Sum_probs=33.3
Q ss_pred cCCCCcccchhhhhcccCCceeEEecccccccEEEEec
Q psy14548 423 AGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLK 460 (482)
Q Consensus 423 a~~g~glp~~~~~a~~~~~~~~~~~~~g~g~d~~~~~~ 460 (482)
.|.|+||.+++..++..||.+.+.+-.| |+-+.++++
T Consensus 310 ~g~GlGL~i~~~iv~~~gG~i~~~s~~~-~~~f~i~lP 346 (348)
T PRK11073 310 GGTGLGLSIARNLIDQHSGKIEFTSWPG-HTEFSVYLP 346 (348)
T ss_pred CCccCCHHHHHHHHHHcCCeEEEEecCC-ceEEEEEEe
Confidence 4789999999999999999999999888 688888876
No 131
>PRK15053 dpiB sensor histidine kinase DpiB; Provisional
Probab=45.57 E-value=15 Score=39.51 Aligned_cols=40 Identities=28% Similarity=0.295 Sum_probs=37.2
Q ss_pred cCCCCcccchhhhhcccCCceeEEecccccccEEEEeccc
Q psy14548 423 AGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLKAL 462 (482)
Q Consensus 423 a~~g~glp~~~~~a~~~~~~~~~~~~~g~g~d~~~~~~~~ 462 (482)
.|.|+||.+++..++.+||.+.+.+-.|.|+-+.++|+.-
T Consensus 501 ~g~GlGL~ivk~iv~~~~G~i~v~s~~~~Gt~f~i~lP~~ 540 (545)
T PRK15053 501 GEHGIGLYLIASYVTRCGGVITLEDNDPCGTLFSIFIPKV 540 (545)
T ss_pred CCceeCHHHHHHHHHHcCCEEEEEECCCCeEEEEEEECCC
Confidence 4679999999999999999999999999999999999864
No 132
>PRK09470 cpxA two-component sensor protein; Provisional
Probab=45.11 E-value=14 Score=38.41 Aligned_cols=39 Identities=23% Similarity=0.208 Sum_probs=36.2
Q ss_pred cCCCCcccchhhhhcccCCceeEEecccccccEEEEecc
Q psy14548 423 AGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLKA 461 (482)
Q Consensus 423 a~~g~glp~~~~~a~~~~~~~~~~~~~g~g~d~~~~~~~ 461 (482)
.|.|+||.+++..++..||.+.+.+-+|.|+.+.++++.
T Consensus 419 ~g~GlGL~iv~~~v~~~~G~l~~~s~~~~Gt~~~i~lp~ 457 (461)
T PRK09470 419 GGTGLGLAIVENAIQQHRGWVKAEDSPLGGLRLTIWLPL 457 (461)
T ss_pred CCcchhHHHHHHHHHHCCCEEEEEECCCCeEEEEEEeeC
Confidence 578999999999999999999999999999999999875
No 133
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase. Members of this protein family have a novel N-terminal domain, a single predicted membrane-spanning helix, and a predicted cystosolic histidine kinase domain. We designate this protein PrsK, and its companion DNA-binding response regulator protein (TIGR02915) PrsR. These predicted signal-transducing proteins appear to enable enhancer-dependent transcriptional activation. The prsK gene is often associated with exopolysaccharide biosynthesis genes.
Probab=44.00 E-value=15 Score=41.05 Aligned_cols=38 Identities=34% Similarity=0.409 Sum_probs=35.6
Q ss_pred cCCCCcccchhhhhcccCCceeEEecccccccEEEEec
Q psy14548 423 AGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLK 460 (482)
Q Consensus 423 a~~g~glp~~~~~a~~~~~~~~~~~~~g~g~d~~~~~~ 460 (482)
.|.|+||.+++.+++..||++.+.+-+|-|+.+.++++
T Consensus 642 ~G~GLGL~i~~~iv~~~gG~i~v~s~~g~Gt~f~i~LP 679 (679)
T TIGR02916 642 AGMGIGVYECRQYVEEIGGRIEVESTPGQGTIFTLVLP 679 (679)
T ss_pred CCcchhHHHHHHHHHHcCCEEEEEecCCCceEEEEEeC
Confidence 58899999999999999999999999999999999875
No 134
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]
Probab=43.80 E-value=17 Score=39.19 Aligned_cols=41 Identities=29% Similarity=0.338 Sum_probs=37.4
Q ss_pred ccCCCCcccchhhhhcccCCceeEEecccccccEEEEeccc
Q psy14548 422 LAGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLKAL 462 (482)
Q Consensus 422 la~~g~glp~~~~~a~~~~~~~~~~~~~g~g~d~~~~~~~~ 462 (482)
=-|+|.||.+|-.-++.|||.|..-+-++=|+-+-|.|++.
T Consensus 562 ~~GLGLGLaIS~~i~~d~GGsL~v~n~~~~Ga~F~i~L~~a 602 (603)
T COG4191 562 GKGLGLGLAISQNIARDLGGSLEVANHPEGGASFTIELRRA 602 (603)
T ss_pred cCCcchhHHHHHHHHHHhCCeEEeecCCCCceEEEEEeecC
Confidence 35799999999999999999999999999999999999864
No 135
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=41.78 E-value=17 Score=41.76 Aligned_cols=41 Identities=27% Similarity=0.276 Sum_probs=37.6
Q ss_pred ccCCCCcccchhhhhcccCCceeEEecccccccEEEEeccc
Q psy14548 422 LAGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLKAL 462 (482)
Q Consensus 422 la~~g~glp~~~~~a~~~~~~~~~~~~~g~g~d~~~~~~~~ 462 (482)
..|.|+||.+++..++..||.+.+.|-.|-|+.+.+.++--
T Consensus 479 ~~g~GLGL~i~~~i~~~~gG~i~v~s~~~~Gt~f~i~lp~~ 519 (919)
T PRK11107 479 HGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHLPLD 519 (919)
T ss_pred CCCcchhHHHHHHHHHHhCCEEEEEecCCCCEEEEEEEEec
Confidence 35899999999999999999999999999999999999853
No 136
>PRK10604 sensor protein RstB; Provisional
Probab=41.68 E-value=19 Score=37.57 Aligned_cols=41 Identities=20% Similarity=0.161 Sum_probs=37.4
Q ss_pred cCCCCcccchhhhhcccCCceeEEecccccccEEEEecccC
Q psy14548 423 AGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLKALS 463 (482)
Q Consensus 423 a~~g~glp~~~~~a~~~~~~~~~~~~~g~g~d~~~~~~~~~ 463 (482)
.|.|+||.+++.-++..||.+.+-+-+|=|+.+.+.++.-.
T Consensus 385 ~g~GLGL~ivk~i~~~~gG~i~v~s~~~~G~~f~i~lP~~~ 425 (433)
T PRK10604 385 GGCGLGLAIVHSIALAMGGSVNCDESELGGARFSFSWPVWH 425 (433)
T ss_pred CCccchHHHHHHHHHHCCCEEEEEecCCCeeEEEEEEeCCC
Confidence 47899999999999999999999999999999999998654
No 137
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=40.43 E-value=18 Score=41.01 Aligned_cols=42 Identities=31% Similarity=0.459 Sum_probs=38.4
Q ss_pred ccCCCCcccchhhhhcccCCceeEEecccccccEEEEecccC
Q psy14548 422 LAGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLKALS 463 (482)
Q Consensus 422 la~~g~glp~~~~~a~~~~~~~~~~~~~g~g~d~~~~~~~~~ 463 (482)
-.|.|+||.+++..++..||.+.+.|-.|-|+.+.+.++...
T Consensus 466 ~~GtGLGL~i~~~iv~~~gG~i~v~s~~g~Gt~f~i~lP~~~ 507 (779)
T PRK11091 466 ATGTGIGLAVSKRLAQAMGGDITVTSEEGKGSCFTLTIHAPA 507 (779)
T ss_pred CCCcchHHHHHHHHHHHcCCEEEEEecCCCeEEEEEEEeccc
Confidence 468899999999999999999999999999999999998643
No 138
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=39.51 E-value=23 Score=41.14 Aligned_cols=41 Identities=29% Similarity=0.448 Sum_probs=38.0
Q ss_pred cCCCCcccchhhhhcccCCceeEEecccccccEEEEecccC
Q psy14548 423 AGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLKALS 463 (482)
Q Consensus 423 a~~g~glp~~~~~a~~~~~~~~~~~~~g~g~d~~~~~~~~~ 463 (482)
.|.|+||.+++..++..||.+.+.|-.|-|+.+.++|+...
T Consensus 629 ~GtGLGL~I~k~lv~~~gG~I~v~S~~g~Gt~F~i~LP~~~ 669 (924)
T PRK10841 629 QGTGLGLAICEKLINMMDGDISVDSEPGMGSQFTIRIPLYG 669 (924)
T ss_pred CCeehhHHHHHHHHHHCCCEEEEEEcCCCcEEEEEEEECCc
Confidence 58999999999999999999999999999999999998653
No 139
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR. Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154).
Probab=38.09 E-value=24 Score=34.53 Aligned_cols=37 Identities=24% Similarity=0.318 Sum_probs=33.7
Q ss_pred cCCCCcccchhhhhcccCCceeEEecccccccEEEEe
Q psy14548 423 AGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYL 459 (482)
Q Consensus 423 a~~g~glp~~~~~a~~~~~~~~~~~~~g~g~d~~~~~ 459 (482)
.|.|+||-+++..++..||.+.+.+-+|-|+.+-+++
T Consensus 297 ~g~glGL~~~~~~~~~~gG~i~~~s~~~~Gt~~~i~l 333 (333)
T TIGR02966 297 GGTGLGLAIVKHVLSRHHARLEIESELGKGSTFSFIF 333 (333)
T ss_pred CCCcccHHHHHHHHHHCCCEEEEEecCCCCeEEEEEC
Confidence 4789999999999999999999999999999887764
No 140
>PRK09467 envZ osmolarity sensor protein; Provisional
Probab=35.68 E-value=24 Score=36.49 Aligned_cols=38 Identities=26% Similarity=0.388 Sum_probs=35.3
Q ss_pred cCCCCcccchhhhhcccCCceeEEecccccccEEEEec
Q psy14548 423 AGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLK 460 (482)
Q Consensus 423 a~~g~glp~~~~~a~~~~~~~~~~~~~g~g~d~~~~~~ 460 (482)
.|.|+||.+++-.++..||.+.+.+-+|-|+.+-++++
T Consensus 395 ~g~GlGL~iv~~i~~~~~g~l~i~~~~~~G~~~~i~lp 432 (435)
T PRK09467 395 SGTGLGLAIVKRIVDQHNGKVELGNSEEGGLSARAWLP 432 (435)
T ss_pred CCeehhHHHHHHHHHHCCCEEEEEECCCCcEEEEEEEe
Confidence 58999999999999999999999999999999999886
No 141
>PRK11644 sensory histidine kinase UhpB; Provisional
Probab=35.59 E-value=29 Score=37.21 Aligned_cols=35 Identities=23% Similarity=0.278 Sum_probs=32.3
Q ss_pred CCCcccchhhhhcccCCceeEEecccccccEEEEecc
Q psy14548 425 YGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLKA 461 (482)
Q Consensus 425 ~g~glp~~~~~a~~~~~~~~~~~~~g~g~d~~~~~~~ 461 (482)
.|+||.+++..++..||++.+.+ |-|+.+.+.+++
T Consensus 460 ~GLGL~ivr~iv~~~GG~i~v~S--~~Gt~f~I~LP~ 494 (495)
T PRK11644 460 QGFGLRGMRERVTALGGTLTISC--THGTRLSVSLPQ 494 (495)
T ss_pred CCCcHHHHHHHHHHcCCEEEEEc--CCCEEEEEEEeC
Confidence 59999999999999999999999 789999999875
No 142
>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase. This histidine kinase protein is paired with an adjacent response regulator (TIGR03787) gene. It co-occurs with a variant sortase enzyme (TIGR03784), usually in the same gene neighborhood, in proteobacterial species most of which are marine, and with an LPXTG motif-containing sortase target conserved protein (TIGR03788). Sortases and LPXTG proteins are far more common in Gram-positive bacteria, where sortase systems mediate attachment to the cell wall or cross-linking of pilin structures. We give this predicted sensor histidine kinase the gene symbol psdS, for Proteobacterial Dedicated Sortase system Sensor histidine kinase.
Probab=33.79 E-value=26 Score=39.37 Aligned_cols=37 Identities=32% Similarity=0.329 Sum_probs=33.4
Q ss_pred CCCCcccchhhhhcccCCceeEEeccc-ccccEEEEec
Q psy14548 424 GYGYGLPISRLYARYFHGDIMLLSCDG-LGTDAIIYLK 460 (482)
Q Consensus 424 ~~g~glp~~~~~a~~~~~~~~~~~~~g-~g~d~~~~~~ 460 (482)
|.|+||.+++..++..||.+.+.+-.+ -|+.+.++|+
T Consensus 666 g~GLGL~Ivr~Iv~~~gG~I~v~s~~~g~Gt~f~I~LP 703 (703)
T TIGR03785 666 HLGLGLYIVRLIADFHQGRIQAENRQQNDGVVFRISLP 703 (703)
T ss_pred CccHHHHHHHHHHHHcCCEEEEEECCCCCeEEEEEEeC
Confidence 689999999999999999999999875 8999888774
No 143
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional
Probab=33.58 E-value=33 Score=37.33 Aligned_cols=38 Identities=26% Similarity=0.355 Sum_probs=35.8
Q ss_pred CCCCcccchhhhhcccCCceeEEecccccccEEEEecc
Q psy14548 424 GYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLKA 461 (482)
Q Consensus 424 ~~g~glp~~~~~a~~~~~~~~~~~~~g~g~d~~~~~~~ 461 (482)
+.|+||.+++-.++-+||.+.+.+-+|-||.+.+.|+.
T Consensus 519 ~~glGL~i~~~~~~~lgG~l~i~s~~~~Gt~v~i~lp~ 556 (569)
T PRK10600 519 SNHYGLIIMRDRAQSLRGDCRVRRRESGGTEVVVTFIP 556 (569)
T ss_pred CCCccHHHHHHHHHHcCCEEEEEECCCCCEEEEEEEec
Confidence 56899999999999999999999999999999999987
No 144
>PRK10547 chemotaxis protein CheA; Provisional
Probab=33.39 E-value=43 Score=37.33 Aligned_cols=41 Identities=24% Similarity=0.382 Sum_probs=38.0
Q ss_pred cccCCCCcccchhhhhcccCCceeEEecccccccEEEEecc
Q psy14548 421 PLAGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLKA 461 (482)
Q Consensus 421 pla~~g~glp~~~~~a~~~~~~~~~~~~~g~g~d~~~~~~~ 461 (482)
...|.|+||.+.+...+-.||.+.+.|-.|-||.+.|+|+.
T Consensus 483 ~~sGrGvGL~iVk~~ve~lgG~I~v~S~~g~Gt~f~i~LPl 523 (670)
T PRK10547 483 DVSGRGVGMDVVKRNIQEMGGHVEIQSKQGKGTTIRILLPL 523 (670)
T ss_pred cCCCCchhHHHHHHHHHHcCCEEEEEecCCCcEEEEEEEec
Confidence 35799999999999999999999999999999999999885
No 145
>PRK10490 sensor protein KdpD; Provisional
Probab=33.12 E-value=31 Score=39.95 Aligned_cols=40 Identities=25% Similarity=0.222 Sum_probs=37.4
Q ss_pred cCCCCcccchhhhhcccCCceeEEecccccccEEEEeccc
Q psy14548 423 AGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLKAL 462 (482)
Q Consensus 423 a~~g~glp~~~~~a~~~~~~~~~~~~~g~g~d~~~~~~~~ 462 (482)
.|.|+||.+++..++..||.+.+.+-.|-|+.+.+.|+.-
T Consensus 844 ~G~GLGL~Ivk~ive~hGG~I~v~s~~~~Gt~f~i~LPl~ 883 (895)
T PRK10490 844 PGVGLGLAICRAIVEVHGGTIWAENRPEGGACFRVTLPLE 883 (895)
T ss_pred CCccHHHHHHHHHHHHcCCEEEEEECCCCeEEEEEEeECC
Confidence 4899999999999999999999999999999999999864
No 146
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=33.03 E-value=34 Score=34.74 Aligned_cols=46 Identities=26% Similarity=0.312 Sum_probs=41.2
Q ss_pred CCcccCCCCcccchhhhhcccCCceeEEecccccccEEEEecccCc
Q psy14548 419 TVPLAGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLKALSN 464 (482)
Q Consensus 419 ~~pla~~g~glp~~~~~a~~~~~~~~~~~~~g~g~d~~~~~~~~~~ 464 (482)
.-.+.|.|.||.+.+--.+.+||.+=--|-+|-|+-+++.|+--+.
T Consensus 406 sR~~gGTGLGLaIakeiV~~hgG~iWA~s~~gkgtt~~ftLPy~~~ 451 (459)
T COG5002 406 SRKMGGTGLGLAIAKEIVQAHGGRIWAESEEGKGTTFSFTLPYSGE 451 (459)
T ss_pred hhcCCCCchhHHHHHHHHHHhCCeEEEecccCCceEEEEEecccCc
Confidence 3468899999999999999999999999999999999999986543
No 147
>COG0813 DeoD Purine-nucleoside phosphorylase [Nucleotide transport and metabolism]
Probab=31.62 E-value=50 Score=31.24 Aligned_cols=53 Identities=13% Similarity=0.115 Sum_probs=36.1
Q ss_pred eEEEechhHHHHHHHHHHHHHHHHhhhcCCCCCCCCCEEEEEEecCceeEEEEEEcCCCCCh
Q psy14548 232 VRIIYVPSHLYHMLFELFKNSMRATVEHHTDTDVLPPIEVSVVRGKEDICVKMSDKGGGIPR 293 (482)
Q Consensus 232 ~~v~~d~~~L~~il~NLl~NAik~t~~~~~~~~~~p~I~v~~~~~~~~~~i~V~D~G~GI~~ 293 (482)
+-+.+||-+-+.|-.|.++|+..++.-++. .-.+ -.-..-.++|--.|.|||.
T Consensus 17 VLmPGDPlRAK~iAetfLe~~~~vnevR~m-------lgfT--GtYKGk~iSvmg~GmGipS 69 (236)
T COG0813 17 VLMPGDPLRAKYIAETFLENAVCVNEVRGM-------LGFT--GTYKGKKISVMGHGMGIPS 69 (236)
T ss_pred eecCCCCchHHHHHHHHHhhhhhhhhhcch-------hccc--ceecCcEEEEEEecCCCcc
Confidence 567899999999999999999999844332 1111 1112345667777777766
No 148
>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional
Probab=31.26 E-value=38 Score=36.47 Aligned_cols=39 Identities=23% Similarity=0.255 Sum_probs=36.1
Q ss_pred CCCCcccchhhhhcccCCceeEEecccccccEEEEeccc
Q psy14548 424 GYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLKAL 462 (482)
Q Consensus 424 ~~g~glp~~~~~a~~~~~~~~~~~~~g~g~d~~~~~~~~ 462 (482)
|.|+||.+++..++.+||.+.+.|-.|-|+.+.++++.-
T Consensus 522 ~~glGL~i~~~iv~~~~G~i~v~s~~~~Gt~~~i~lP~~ 560 (565)
T PRK10935 522 EGHYGLNIMQERAERLGGTLTISQPPGGGTTVSLTFPSQ 560 (565)
T ss_pred CCCcCHHHHHHHHHHcCCEEEEEECCCCcEEEEEEECCC
Confidence 678999999999999999999999999999999999864
No 149
>PRK09835 sensor kinase CusS; Provisional
Probab=30.01 E-value=36 Score=35.64 Aligned_cols=39 Identities=31% Similarity=0.395 Sum_probs=34.1
Q ss_pred cCCCCcccchhhhhcccCCceeEEecccccccEEEEeccc
Q psy14548 423 AGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLKAL 462 (482)
Q Consensus 423 a~~g~glp~~~~~a~~~~~~~~~~~~~g~g~d~~~~~~~~ 462 (482)
-|.|+||.+++.-++..||.+.+-+- +-|+.+.+++++.
T Consensus 443 ~g~GlGL~i~~~i~~~~~g~i~~~s~-~~g~~~~i~lP~~ 481 (482)
T PRK09835 443 EGSGIGLAIVKSIVVAHKGTVAVTSD-ARGTRFVISLPRL 481 (482)
T ss_pred CCcchHHHHHHHHHHHCCCEEEEEEC-CCcEEEEEEeeCC
Confidence 47899999999999999999999986 4599999998864
No 150
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional
Probab=27.07 E-value=47 Score=34.67 Aligned_cols=41 Identities=22% Similarity=0.210 Sum_probs=37.0
Q ss_pred cCCCCcccchhhhhcccCCceeEEecccccccEEEEecccC
Q psy14548 423 AGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLKALS 463 (482)
Q Consensus 423 a~~g~glp~~~~~a~~~~~~~~~~~~~g~g~d~~~~~~~~~ 463 (482)
.|.|+||.+++..++..||.+.+.+-.|=|+-+.+.++.-.
T Consensus 420 ~g~GlGL~iv~~i~~~~~G~l~~~s~~~~G~~~~i~lP~~~ 460 (466)
T PRK10549 420 GGSGLGLAICLNIVEAHNGRIIAAHSPFGGVSITVELPLER 460 (466)
T ss_pred CCCcHHHHHHHHHHHHcCCEEEEEECCCCeEEEEEEccCCC
Confidence 37899999999999999999999999999999999998543
No 151
>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]
Probab=27.07 E-value=59 Score=36.60 Aligned_cols=161 Identities=15% Similarity=0.130 Sum_probs=89.5
Q ss_pred CceeEEEEEEcCCCCChhhHhhhhhcccccCCCCCCCCCCCCCCCCcccCHHHHHHHH-HHhCCEEEEEeecCCcEEEEE
Q psy14548 277 KEDICVKMSDKGGGIPRSVTDMLFHYMYSTAPQPSKSDAHTVPLAGYGYGLPISRLYA-RYFHGDIMLLSCDGLGTDAII 355 (482)
Q Consensus 277 ~~~~~i~V~D~G~GI~~~~~~~if~~f~~t~~~~~~~~~~~~~~~G~GLGL~i~r~~~-~~~gG~i~v~s~~g~Gt~f~i 355 (482)
+..+.+.|.-...-++...+++|-+|...- -++---+|+=.+=.|.-+ +-=-|+|.+.- ...|..+.|
T Consensus 411 gK~V~L~ieG~~telDksIlE~l~dPL~HL----------vRNAvDHGIE~pE~R~a~GKp~~G~I~L~A-~~~gn~ivI 479 (716)
T COG0643 411 GKQVELVIEGEDTELDKSILERLGDPLTHL----------VRNAVDHGIETPEERRAAGKPEEGTITLSA-YHEGNNIVI 479 (716)
T ss_pred CCeeEEEEecCCeeehHHHHHHhcccHHHH----------HhcchhccCCCHHHHHHcCCCCcceEEEEE-EcCCCeEEE
Confidence 456777777777778888888888886441 111123455555444432 12237787754 345555556
Q ss_pred EeeCCCCcccccccccccccccccccCCCCCCCcccccccccccCCcccccCCCCCCCCCCCCCCcccCCCCcccchhhh
Q psy14548 356 YLKALSNEANELLPIFNKTSSKFYRATIPTGDWSSTQSACMEHRHPTISQSKTSSKHVPSDAHTVPLAGYGYGLPISRLY 435 (482)
Q Consensus 356 ~lp~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~pla~~g~glp~~~~~ 435 (482)
.+---+. +-.+--+..+.-.+..-...++.. -...++..-. -.+.+.-......++|-|.||.+-+.-
T Consensus 480 ev~DDG~-Gid~ekI~~KAiErGli~~~~a~~--lSd~Ei~~LI---------F~PGFSTa~~VtdvSGRGVGMDVVk~~ 547 (716)
T COG0643 480 EVSDDGA-GIDREKIREKAIERGLITEEEAET--LSDEEILNLI---------FAPGFSTAEQVTDVSGRGVGMDVVKTN 547 (716)
T ss_pred EEeeCCC-CCCHHHHHHHHHHcCCCChHHhcc--CCHHHHHHHH---------hcCCCCcchhhhcccCCccCHHHHHHH
Confidence 5542211 000000111111111111111110 1111111111 112233334457899999999999999
Q ss_pred hcccCCceeEEecccccccEEEEec
Q psy14548 436 ARYFHGDIMLLSCDGLGTDAIIYLK 460 (482)
Q Consensus 436 a~~~~~~~~~~~~~g~g~d~~~~~~ 460 (482)
-+-.||.+.+-|-.|-||-+-|+|+
T Consensus 548 I~~LgG~I~V~S~~G~GT~Fti~LP 572 (716)
T COG0643 548 IEQLGGSISVSSEPGKGTTFTIRLP 572 (716)
T ss_pred HHHcCCEEEEEecCCCCeEEEEecC
Confidence 9999999999999999999999987
No 152
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]
Probab=27.00 E-value=53 Score=35.25 Aligned_cols=44 Identities=27% Similarity=0.409 Sum_probs=40.4
Q ss_pred ccCCCCcccchhhhhcccCCceeEEecccccccEEEEecccCcc
Q psy14548 422 LAGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLKALSNE 465 (482)
Q Consensus 422 la~~g~glp~~~~~a~~~~~~~~~~~~~g~g~d~~~~~~~~~~~ 465 (482)
-.+-|+||-+.+.|.+-.||++.+-+-.|-||.+++++++-...
T Consensus 492 ~~~rGiGL~Lvkq~V~~~~G~I~~~s~~~~Gt~F~i~iP~~~~~ 535 (537)
T COG3290 492 TGGRGIGLYLVKQLVERLGGSIEVESEKGQGTRFSIYIPKVKER 535 (537)
T ss_pred CCCCchhHHHHHHHHHHcCceEEEeeCCCCceEEEEECCCCccc
Confidence 36789999999999999999999999999999999999987654
No 153
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=26.97 E-value=43 Score=40.00 Aligned_cols=39 Identities=33% Similarity=0.526 Sum_probs=37.0
Q ss_pred cCCCCcccchhhhhcccCCceeEEecccccccEEEEecc
Q psy14548 423 AGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLKA 461 (482)
Q Consensus 423 a~~g~glp~~~~~a~~~~~~~~~~~~~g~g~d~~~~~~~ 461 (482)
.|.|+||.+++..++..||.+.+.+-.|-|+.+.+.|+-
T Consensus 898 ~G~GLGL~i~~~iv~~~gG~i~v~s~~~~Gt~f~i~lP~ 936 (1197)
T PRK09959 898 TGSGLGLMICKELIKNMQGDLSLESHPGIGTTFTITIPV 936 (1197)
T ss_pred CCcCchHHHHHHHHHHcCCEEEEEeCCCCcEEEEEEEEc
Confidence 489999999999999999999999999999999999985
No 154
>PF01106 NifU: NifU-like domain; InterPro: IPR001075 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This entry represents the C-terminal of NifU and homologous proteins. NifU contains two domains: an N-terminal (IPR002871 from INTERPRO) and a C-terminal domain []. These domains exist either together or on different polypeptides, both domains being found in organisms that do not fix nitrogen (e.g. yeast), so they have a broader significance in the cell than nitrogen fixation. ; GO: 0005506 iron ion binding, 0051536 iron-sulfur cluster binding, 0016226 iron-sulfur cluster assembly; PDB: 2JNV_A 2Z51_A 1TH5_A 1VEH_A 1XHJ_A.
Probab=23.74 E-value=1.3e+02 Score=22.66 Aligned_cols=28 Identities=25% Similarity=0.268 Sum_probs=21.7
Q ss_pred HHHHHHHhCCEEEEEeecCCcEEEEEEeeC
Q psy14548 330 SRLYARYFHGDIMLLSCDGLGTDAIIYLKA 359 (482)
Q Consensus 330 ~r~~~~~~gG~i~v~s~~g~Gt~f~i~lp~ 359 (482)
+|-+++.|||++.+....+. ++++.|.-
T Consensus 8 IrP~L~~dGGdv~lv~v~~~--~V~V~l~G 35 (68)
T PF01106_consen 8 IRPYLQSDGGDVELVDVDDG--VVYVRLTG 35 (68)
T ss_dssp CHHHHHHTTEEEEEEEEETT--EEEEEEES
T ss_pred hChHHHhcCCcEEEEEecCC--EEEEEEEe
Confidence 46678899999999887765 77777753
No 155
>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins
Probab=23.38 E-value=79 Score=24.05 Aligned_cols=37 Identities=32% Similarity=0.349 Sum_probs=28.5
Q ss_pred cccCCCCcccchhhhhcccCCceeEEecccccccEEE
Q psy14548 421 PLAGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAII 457 (482)
Q Consensus 421 pla~~g~glp~~~~~a~~~~~~~~~~~~~g~g~d~~~ 457 (482)
+..+.|+||.+++..+..+||.+.+.+-.+=|+-+.+
T Consensus 65 ~~~~~g~gl~~~~~~~~~~~g~~~~~~~~~~g~~~~~ 101 (103)
T cd00075 65 KGGGTGLGLSIVKKLVELHGGRIEVESEPGGGTTFTI 101 (103)
T ss_pred CCCccccCHHHHHHHHHHcCCEEEEEeCCCCcEEEEE
Confidence 4456889999999999999999999876654554433
No 156
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=23.34 E-value=70 Score=36.17 Aligned_cols=44 Identities=25% Similarity=0.254 Sum_probs=40.4
Q ss_pred ccCCCCcccchhhhhcccCCceeEEecccccccEEEEecccCcc
Q psy14548 422 LAGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLKALSNE 465 (482)
Q Consensus 422 la~~g~glp~~~~~a~~~~~~~~~~~~~g~g~d~~~~~~~~~~~ 465 (482)
-.|.|.||.+|+..-+.-||.+.....++=|+.+++.|+.-...
T Consensus 840 ~~G~GLGLsIc~~iv~ahgG~I~a~~~~~gGa~f~~~LP~~~~~ 883 (890)
T COG2205 840 TRGVGLGLAICRGIVEAHGGTISAENNPGGGAIFVFTLPVEEDP 883 (890)
T ss_pred CCCccccHHHHHHHHHHcCCeEEEEEcCCCceEEEEEeecCCCC
Confidence 78899999999999999999999999999999999999876443
No 157
>PF07492 Trehalase_Ca-bi: Neutral trehalase Ca2+ binding domain; InterPro: IPR011120 Neutral trehalases mobilise trehalose accumulated by fungal cells as a protective and storage carbohydrate. This family represents a calcium-binding domain similar to EF hand. Residues 97 and 108 in O42893 from SWISSPROT have been implicated in this interaction. It is thought that this domain may provide a general mechanism for regulating neutral trehalase activity in yeasts and filamentous fungi [].; GO: 0004555 alpha,alpha-trehalase activity, 0005509 calcium ion binding, 0005993 trehalose catabolic process, 0005737 cytoplasm
Probab=23.20 E-value=62 Score=20.37 Aligned_cols=14 Identities=14% Similarity=0.361 Sum_probs=11.1
Q ss_pred cCceeEEEEEEcCC
Q psy14548 276 GKEDICVKMSDKGG 289 (482)
Q Consensus 276 ~~~~~~i~V~D~G~ 289 (482)
.++...|+|.|+|+
T Consensus 10 TDgn~qITIeD~GP 23 (30)
T PF07492_consen 10 TDGNFQITIEDTGP 23 (30)
T ss_pred cCCCcEEEEecCCC
Confidence 34568899999997
No 158
>PRK10337 sensor protein QseC; Provisional
Probab=21.55 E-value=57 Score=33.89 Aligned_cols=37 Identities=24% Similarity=0.296 Sum_probs=32.7
Q ss_pred cCCCCcccchhhhhcccCCceeEEecccccccEEEEe
Q psy14548 423 AGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYL 459 (482)
Q Consensus 423 a~~g~glp~~~~~a~~~~~~~~~~~~~g~g~d~~~~~ 459 (482)
.|.|+||.+++-.++..||.+.+-+-.|-|+.+.+.+
T Consensus 413 ~g~GlGL~iv~~i~~~~gg~l~~~s~~~~G~~~~i~~ 449 (449)
T PRK10337 413 TGSGLGLSIVRRIAKLHGMNVSFGNAPEGGFEAKVSW 449 (449)
T ss_pred CccchHHHHHHHHHHHcCCEEEEEecCCCeEEEEEeC
Confidence 4789999999999999999999999998888877653
No 159
>KOG0394|consensus
Probab=20.39 E-value=2.8e+02 Score=25.71 Aligned_cols=62 Identities=16% Similarity=0.172 Sum_probs=43.9
Q ss_pred echhHHHHHHHHHHHHHHHHhhhcCCCCCCCCCEEEEEEecCceeEEEEEEcCCCCChhhHhhhhhcccccC
Q psy14548 236 YVPSHLYHMLFELFKNSMRATVEHHTDTDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVTDMLFHYMYSTA 307 (482)
Q Consensus 236 ~d~~~L~~il~NLl~NAik~t~~~~~~~~~~p~I~v~~~~~~~~~~i~V~D~G~GI~~~~~~~if~~f~~t~ 307 (482)
+--+.+.|-+.+=+++-.++|....- ++=.+..++..+++.|.|+++ .|..+.+.-+||+.+
T Consensus 21 GKtSLmn~yv~~kF~~qykaTIgadF-------ltKev~Vd~~~vtlQiWDTAG---QERFqsLg~aFYRga 82 (210)
T KOG0394|consen 21 GKTSLMNQYVNKKFSQQYKATIGADF-------LTKEVQVDDRSVTLQIWDTAG---QERFQSLGVAFYRGA 82 (210)
T ss_pred cHHHHHHHHHHHHHHHHhccccchhh-------eeeEEEEcCeEEEEEEEeccc---HHHhhhcccceecCC
Confidence 44566777777777877777754321 333344457889999999986 677778888899965
Done!