Query psy14548
Match_columns 482
No_of_seqs 572 out of 4241
Neff 8.1
Searched_HMMs 29240
Date Fri Aug 16 22:41:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14548.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14548hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2e0a_A Pyruvate dehydrogenase 100.0 5.2E-57 1.8E-61 465.7 41.8 382 11-396 3-386 (394)
2 2q8g_A [pyruvate dehydrogenase 100.0 1.5E-56 5.1E-61 464.2 41.4 390 6-396 8-399 (407)
3 1y8o_A [pyruvate dehydrogenase 100.0 3.1E-56 1.1E-60 463.3 38.7 391 3-396 17-410 (419)
4 2btz_A Pyruvate dehydrogenase 100.0 1.2E-55 4E-60 455.6 40.0 383 10-396 2-386 (394)
5 1gkz_A [3-methyl-2-oxobutanoat 100.0 1E-48 3.4E-53 403.0 33.3 332 12-362 26-375 (388)
6 2c2a_A Sensor histidine kinase 100.0 3.2E-30 1.1E-34 249.3 25.2 230 103-361 20-249 (258)
7 4ew8_A Sensor protein DIVL; si 100.0 2.2E-26 7.6E-31 223.1 26.8 220 102-362 39-258 (268)
8 3jz3_A Sensor protein QSEC; he 99.9 6.6E-28 2.2E-32 226.7 12.5 218 103-362 2-219 (222)
9 3d36_A Sporulation kinase B; G 99.9 2E-26 6.8E-31 219.7 20.4 217 100-362 11-227 (244)
10 3a0r_A Sensor protein; four he 99.9 4.7E-26 1.6E-30 228.8 18.2 214 103-361 132-346 (349)
11 4fpp_A Phosphotransferase; fou 99.9 2.5E-24 8.4E-29 207.5 19.2 197 106-359 49-247 (247)
12 1ysr_A Sensor-type histidine k 99.9 8E-24 2.7E-28 187.2 16.5 143 190-360 7-149 (150)
13 1id0_A PHOQ histidine kinase; 99.9 3.6E-23 1.2E-27 183.1 18.1 145 190-362 3-147 (152)
14 1bxd_A ENVZ(290-450), protein 99.9 3E-23 1E-27 185.8 14.7 144 190-362 9-152 (161)
15 3a0y_A Sensor protein; ATP-LID 99.9 1.9E-22 6.4E-27 178.2 18.8 144 190-361 5-149 (152)
16 3sl2_A Sensor histidine kinase 99.9 3.1E-22 1E-26 182.3 14.6 150 191-362 3-154 (177)
17 1r62_A Nitrogen regulation pro 99.9 6.6E-22 2.3E-26 176.0 14.4 141 190-359 7-158 (160)
18 1b3q_A Protein (chemotaxis pro 99.9 1.3E-21 4.3E-26 200.2 16.6 209 102-361 9-249 (379)
19 1i58_A Chemotaxis protein CHEA 99.9 1.5E-21 5.2E-26 179.6 11.9 156 190-359 4-188 (189)
20 3ehh_A Sensor kinase (YOCF pro 99.8 1.7E-19 5.7E-24 169.2 22.3 189 103-360 28-216 (218)
21 3ehg_A Sensor kinase (YOCF pro 99.8 2.8E-18 9.6E-23 147.7 13.4 125 191-360 2-126 (128)
22 3zxo_A Redox sensor histidine 99.7 9.9E-18 3.4E-22 143.9 9.4 124 190-360 4-128 (129)
23 3zxq_A Hypoxia sensor histidin 99.7 5E-17 1.7E-21 138.6 10.7 121 192-359 2-122 (124)
24 1mu5_A Type II DNA topoisomera 99.7 1.3E-16 4.5E-21 166.3 13.8 118 234-360 26-148 (471)
25 1th8_A Anti-sigma F factor; SP 99.7 1.2E-16 4.1E-21 140.4 11.1 107 236-362 35-141 (145)
26 2zbk_B Type 2 DNA topoisomeras 99.7 1.4E-16 4.6E-21 168.1 11.2 120 232-360 22-147 (530)
27 2q2e_B Type 2 DNA topoisomeras 99.5 3.9E-14 1.3E-18 151.3 10.6 120 233-360 30-154 (621)
28 3na3_A DNA mismatch repair pro 98.7 2.3E-08 7.9E-13 99.7 10.0 93 240-347 28-120 (348)
29 1h7s_A PMS1 protein homolog 2; 98.7 2.9E-08 9.9E-13 100.1 8.9 84 240-333 34-117 (365)
30 1b63_A MUTL; DNA mismatch repa 98.7 1.7E-08 5.8E-13 100.8 6.6 93 240-347 24-116 (333)
31 1kij_A DNA gyrase subunit B; t 98.6 1.6E-08 5.5E-13 102.9 3.6 89 235-337 31-127 (390)
32 2btz_A Pyruvate dehydrogenase 98.6 1.8E-08 6.3E-13 102.9 2.7 64 419-482 307-370 (394)
33 2q8g_A [pyruvate dehydrogenase 98.5 2.5E-08 8.4E-13 102.5 3.1 65 418-482 319-383 (407)
34 3h4l_A DNA mismatch repair pro 98.5 9.8E-08 3.3E-12 96.0 7.2 93 240-347 25-117 (367)
35 2e0a_A Pyruvate dehydrogenase 98.5 3.2E-08 1.1E-12 101.1 3.0 64 419-482 307-370 (394)
36 1y8o_A [pyruvate dehydrogenase 98.5 3.2E-08 1.1E-12 102.0 2.2 65 418-482 330-394 (419)
37 3ke6_A Protein RV1364C/MT1410; 98.4 4.4E-07 1.5E-11 92.9 7.7 91 238-360 295-386 (399)
38 2wer_A ATP-dependent molecular 98.2 1.1E-06 3.7E-11 82.4 5.8 91 243-333 29-130 (220)
39 1ixm_A SPO0B, protein (sporula 98.2 5.8E-05 2E-09 68.9 15.9 156 99-305 14-171 (192)
40 1qy5_A Endoplasmin; GRP94, NEC 98.1 9.6E-07 3.3E-11 85.0 2.3 117 243-359 31-185 (269)
41 1yc1_A HSP 86, heat shock prot 98.0 8.5E-06 2.9E-10 78.2 7.1 92 243-334 71-173 (264)
42 1s16_A Topoisomerase IV subuni 98.0 1E-05 3.6E-10 82.0 7.5 83 242-335 33-124 (390)
43 2ior_A Chaperone protein HTPG; 97.9 6.1E-06 2.1E-10 78.0 3.9 62 242-305 49-119 (235)
44 1ei1_A DNA gyrase B, GYRB; ATP 97.8 2.5E-05 8.6E-10 79.2 7.6 86 240-335 34-127 (391)
45 2gqp_A Endoplasmin; GRP94, HSP 97.7 8.4E-06 2.9E-10 77.1 1.8 65 242-306 34-105 (236)
46 3t0h_A Heat shock protein HSP 97.7 2.6E-05 8.7E-10 73.2 4.4 92 242-333 34-136 (228)
47 4duh_A DNA gyrase subunit B; s 97.7 7.7E-05 2.6E-09 69.5 7.2 105 239-358 34-146 (220)
48 3o0i_A HSP90AA1 protein; HSP90 97.6 2.4E-05 8.3E-10 74.3 3.3 92 243-334 63-165 (256)
49 4emv_A DNA topoisomerase IV, B 97.5 0.00014 4.9E-09 67.9 7.4 106 238-358 38-150 (226)
50 1gkz_A [3-methyl-2-oxobutanoat 97.5 3.5E-05 1.2E-09 78.2 3.2 52 419-471 330-381 (388)
51 3fv5_A DNA topoisomerase 4 sub 97.5 9.1E-05 3.1E-09 68.1 5.6 100 242-357 19-127 (201)
52 3peh_A Endoplasmin homolog; st 97.5 0.00014 4.7E-09 69.9 6.4 92 242-333 48-151 (281)
53 1zxm_A TOPO IIA ATPase, DNA to 97.4 0.00037 1.3E-08 70.7 9.4 89 238-335 50-147 (400)
54 1y4s_A Chaperone protein HTPG; 97.4 0.00046 1.6E-08 72.8 10.1 116 242-359 29-182 (559)
55 3nmq_A Heat shock protein HSP 97.4 0.00012 4.2E-09 68.8 4.5 93 242-334 41-144 (239)
56 2cg9_A ATP-dependent molecular 97.3 0.00042 1.4E-08 74.4 8.8 115 243-359 29-179 (677)
57 3cwv_A DNA gyrase, B subunit, 97.2 0.00051 1.7E-08 69.1 6.7 84 237-335 27-110 (369)
58 2o1u_A Endoplasmin; GRP94, HSP 97.1 0.00021 7E-09 76.8 3.9 121 234-359 42-202 (666)
59 3lnu_A Topoisomerase IV subuni 97.0 0.00073 2.5E-08 68.5 6.5 85 242-336 52-144 (408)
60 2ioq_A Chaperone protein HTPG; 97.0 0.00037 1.3E-08 74.5 4.0 91 242-334 29-134 (624)
61 1pvg_A DNA topoisomerase II; G 97.0 0.0015 5E-08 66.6 8.0 111 235-358 60-179 (418)
62 3ttz_A DNA gyrase subunit B; p 96.8 0.002 6.8E-08 58.9 6.7 49 238-294 29-77 (198)
63 3ied_A Heat shock protein; HSP 96.8 0.00052 1.8E-08 64.7 2.7 65 269-333 119-188 (272)
64 4gfh_A DNA topoisomerase 2; to 94.7 0.077 2.6E-06 60.7 9.2 89 240-336 59-155 (1177)
65 3zcc_A HAMP, osmolarity sensor 92.7 0.47 1.6E-05 37.5 8.4 95 55-169 14-113 (114)
66 3mm4_A Histidine kinase homolo 91.6 0.033 1.1E-06 50.6 0.0 29 334-362 16-44 (206)
67 1bxd_A ENVZ(290-450), protein 86.9 0.86 2.9E-05 38.9 5.5 43 423-465 111-153 (161)
68 1id0_A PHOQ histidine kinase; 86.7 0.42 1.4E-05 40.3 3.3 43 423-465 106-148 (152)
69 2c2a_A Sensor histidine kinase 86.1 0.34 1.2E-05 45.0 2.7 41 423-463 209-249 (258)
70 1i58_A Chemotaxis protein CHEA 85.8 0.34 1.2E-05 42.8 2.3 38 423-460 150-187 (189)
71 1ysr_A Sensor-type histidine k 85.3 0.47 1.6E-05 40.0 2.9 39 423-461 110-148 (150)
72 3jz3_A Sensor protein QSEC; he 84.1 0.34 1.2E-05 43.5 1.6 41 423-463 178-218 (222)
73 3sl2_A Sensor histidine kinase 82.4 0.6 2.1E-05 40.6 2.4 43 422-464 112-154 (177)
74 3d36_A Sporulation kinase B; G 80.8 0.77 2.6E-05 41.8 2.7 44 422-465 185-228 (244)
75 4ew8_A Sensor protein DIVL; si 77.5 1.2 4E-05 41.4 2.8 43 423-465 217-259 (268)
76 3a0y_A Sensor protein; ATP-LID 77.1 1.5 5E-05 36.7 3.1 39 423-462 109-148 (152)
77 3ehg_A Sensor kinase (YOCF pro 74.4 1.5 5E-05 36.0 2.3 37 423-461 89-125 (128)
78 3ehh_A Sensor kinase (YOCF pro 71.8 1.5 5.2E-05 39.2 1.9 37 423-461 179-215 (218)
79 3zxo_A Redox sensor histidine 71.7 1.6 5.5E-05 35.5 1.9 37 425-461 90-127 (129)
80 1b3q_A Protein (chemotaxis pro 71.0 2 6.8E-05 42.8 2.7 41 421-461 207-247 (379)
81 3zrx_A AF1503 protein, osmolar 69.8 16 0.00053 28.1 7.5 78 72-169 36-113 (115)
82 3zxq_A Hypoxia sensor histidin 68.8 1.5 5.2E-05 35.4 1.1 35 426-460 87-121 (124)
83 1r62_A Nitrogen regulation pro 67.6 1.9 6.5E-05 36.2 1.5 38 423-461 121-158 (160)
84 3a0r_A Sensor protein; four he 60.5 4.6 0.00016 38.7 3.0 40 423-463 306-346 (349)
85 4fpp_A Phosphotransferase; fou 59.4 2.2 7.5E-05 39.6 0.4 39 422-461 209-247 (247)
86 1th8_A Anti-sigma F factor; SP 29.6 27 0.00093 28.6 2.5 37 423-463 104-140 (145)
87 1slu_A Ecotin; serine protease 27.4 34 0.0012 28.9 2.6 23 438-460 54-76 (142)
88 3lmm_A Uncharacterized protein 27.3 2.3E+02 0.0079 29.6 9.6 100 242-361 298-409 (583)
89 2y6t_E Ecotin, chymotrypsinoge 23.1 39 0.0013 28.7 2.2 29 431-460 53-81 (148)
No 1
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A*
Probab=100.00 E-value=5.2e-57 Score=465.68 Aligned_cols=382 Identities=53% Similarity=0.921 Sum_probs=308.3
Q ss_pred HHHHHHHhhcCCCCcccHHHHHhcC-CCcChhhHHHHHHHHHHHHHHHHHHHHhcCChhhhcCChHHHHHHHHHHHHHHH
Q psy14548 11 VSKMLDFYSQFNPSPLSIKQFIDFG-LSASEEKSFMFLRKELPVRLANIMKEIHLLPDNLLRMPSVGLVNEWYAMSFDEI 89 (482)
Q Consensus 11 ~~~~~~~y~~~~~~~~sl~~l~~~g-~~~~~~~s~~~l~~eLp~Rla~ri~~l~~lp~~l~~~~~i~~v~~~y~~sf~~l 89 (482)
+.+.|++||+++++|+||+||++|| .+.++.+|++|+++|||+|||+++++++.||+.+..++.+.+++++|.++|++|
T Consensus 3 ~~~~~~~~~~~~~~~~sl~~l~~fg~~~~~~~~s~~~l~~el~~rla~~~~~l~~l~~~l~~~~~~~ev~~~l~~s~~~l 82 (394)
T 2e0a_A 3 VPREVEHFSRYSPSPLSMKQLLDFGSENACERTSFAFLRQELPVRLANILKEIDILPTQLVNTSSVQLVKSWYIQSLMDL 82 (394)
T ss_dssp CCHHHHHHTTSCCCCCBHHHHHHTTC---CHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHTSHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHcCCCCCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccHhhhcCchHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999 678888999999999999999999999999999999999999999999999999
Q ss_pred HcccccCCCCchhHHHHHHHHHHHHHhhchhH-HHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhhHHHHHHHHHH
Q psy14548 90 LEFEKADSNSTDTLDKFCKALVKIRNRHSDVV-QTMAQGVMELKDSHDVDHQTENSIQYFLDRFYMSRISIRMLINQHTL 168 (482)
Q Consensus 90 ~~~~~~~~~~~~~~~~f~~~l~~~l~~~~~~i-~~la~g~~e~~~~~~~~~~~~e~~~~~Ld~i~~sri~~r~Li~~~l~ 168 (482)
....+...+..++.+.|+..+ |++++|++.+ .+++.|+.++.+....+....+++++|++++...+++.|++++++|.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~-HeLrtpl~~vPlt~i~g~~el~~~~~~~~~~~~~~~~~l~~~~i~~~~~rlli~~lL~ 161 (394)
T 2e0a_A 83 VEFHEKSPDDQKALSDFVDTL-IKVRNRHHNVVPTMAQGIIEYKDACTVDPVTNQNLQYFLDRFYMNRISTRMLMNQHIL 161 (394)
T ss_dssp HTTSSSCTTCHHHHHHHHHHH-HHHHHHHTTHHHHHHHHHHHHHTTSCCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccccCccchHHHHHHHHHH-HHHHhhhhhhHHHHHHHHHHHHhhhccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998876655555555676655 9999976665 77778888877654444556788999999877778888999999999
Q ss_pred hhccccccCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEeeccCCCCCeEEEechhHHHHHHHHH
Q psy14548 169 LFGDELTRGDSSLRHIGCIDPQCDLIGVVKDAYENARFLCEQYYLSSPELKVTEHNEYEKGEPVRIIYVPSHLYHMLFEL 248 (482)
Q Consensus 169 L~~~~~~~~~~~~~~ig~i~~~~~l~~li~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~L~~il~NL 248 (482)
++.... ......+|.+++.+++.++++++++.++..|...|+..+++.+.+.....+..+..+.+|+.+|.+|+.||
T Consensus 162 l~~~~~---~~~~~~~g~i~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~v~~d~~~L~~il~NL 238 (394)
T 2e0a_A 162 IFSDSQ---TGNPSHIGSIDPNCDVVAVVQDAFECSRMLCDQYYLSSPELKLTQVNGKFPDQPIHIVYVPSHLHHMLFEL 238 (394)
T ss_dssp HHCSSC---CCCTTSBTTBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEESSSTTSCCEEEECHHHHHHHHHHH
T ss_pred Hhhccc---CCCCCccccccCCCCHHHHHHHHHHHHHHHHHHhcCCCCceEEEEeccCCCCCCeEEEEcHHHHHHHHHHH
Confidence 765431 23345677888899999999999999999999999999988888743112345678999999999999999
Q ss_pred HHHHHHHhhhcCCCCCCCCCEEEEEEecCceeEEEEEEcCCCCChhhHhhhhhcccccCCCCCCCCCCCCCCCCcccCHH
Q psy14548 249 FKNSMRATVEHHTDTDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVTDMLFHYMYSTAPQPSKSDAHTVPLAGYGYGLP 328 (482)
Q Consensus 249 l~NAik~t~~~~~~~~~~p~I~v~~~~~~~~~~i~V~D~G~GI~~~~~~~if~~f~~t~~~~~~~~~~~~~~~G~GLGL~ 328 (482)
|+||+||+.+++......|+|.|.+...++.+.|+|+|+|+|||++.+++||++||+++..+..+.+..+..+|+||||+
T Consensus 239 l~NAik~~~~~~~~~~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~~~~~~if~~f~~~~~~~~~~~~~~~~~~G~GLGL~ 318 (394)
T 2e0a_A 239 FKNAMRATVEHQENQPSLTPIEVIVVLGKEDLTIKISDRGGGVPLRIIDRLFSYTYSTAPTPVMDNSRNAPLAGFGYGLP 318 (394)
T ss_dssp HHHHHHHHHHHTTTSSSCCCEEEEEEECSSEEEEEEEECSCCCCGGGHHHHTSTTCCSSCCC------CCCSSCSSCHHH
T ss_pred HHHHHHHHHhcccccCCCCCEEEEEEeCCCEEEEEEEeCCCCcCHHHHHHHhCcCccCCCCCCcCcCCCCCCCCcccCHH
Confidence 99999999987643334567999999999999999999999999999999999999976432112223445679999999
Q ss_pred HHHHHHHHhCCEEEEEeecCCcEEEEEEeeCCCCcccccccccccccccccccCCCCCCCcccccccc
Q psy14548 329 ISRLYARYFHGDIMLLSCDGLGTDAIIYLKALSNEANELLPIFNKTSSKFYRATIPTGDWSSTQSACM 396 (482)
Q Consensus 329 i~r~~~~~~gG~i~v~s~~g~Gt~f~i~lp~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (482)
|||.++++|||+|.+.|.+|+||+|+|+||....+..+++|+++++++++|+....+++|+.|+++..
T Consensus 319 i~~~i~~~~gG~i~v~s~~g~Gt~f~i~lP~~~~~~~e~lp~~~~~~~~~~~~~~~~~d~~~~~~~~~ 386 (394)
T 2e0a_A 319 ISRLYAKYFQGDLNLYSLSGYGTDAIIYLKALSSESIEKLPVFNKSAFKHYQMSSEADDWCIPSREPK 386 (394)
T ss_dssp HHHHHHHHTTCEEEEEEETTTEEEEEEEEESSGGGCBCCCCCCSHHHHHHC-----------------
T ss_pred HHHHHHHHhCCEEEEEecCCccEEEEEEeCCCCCCccCCCCCcCchHHHHhccCCCCCCCcCCCCCCc
Confidence 99999999999999999999999999999999878889999999999999999999999999987764
No 2
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A
Probab=100.00 E-value=1.5e-56 Score=464.16 Aligned_cols=390 Identities=55% Similarity=0.970 Sum_probs=317.1
Q ss_pred HHHHHHHHHHHHhhcCCCCcccHHHHHhcC-CCcChhhHHHHHHHHHHHHHHHHHHHHhcCChhhhcCChHHHHHHHHHH
Q psy14548 6 RRCASVSKMLDFYSQFNPSPLSIKQFIDFG-LSASEEKSFMFLRKELPVRLANIMKEIHLLPDNLLRMPSVGLVNEWYAM 84 (482)
Q Consensus 6 ~~~~~~~~~~~~y~~~~~~~~sl~~l~~~g-~~~~~~~s~~~l~~eLp~Rla~ri~~l~~lp~~l~~~~~i~~v~~~y~~ 84 (482)
.+..++.+.|++||+++++|+||+||++|| .+.++.+|++||++|||+|||+++++++.+|+.+..++.+.+++++|.+
T Consensus 8 ~~~~~~~~~i~~~~~~~~~~~sl~~~~~~g~~~~~~~~s~~fl~~elPirla~~~~~i~~l~~~~~~~~~~~ev~~~l~~ 87 (407)
T 2q8g_A 8 ASERGVPGQVDFYARFSPSPLSMKQFLDFGSVNACEKTSFMFLRQELPVRLANIMKEISLLPDNLLRTPSVQLVQSWYIQ 87 (407)
T ss_dssp ----CHHHHHHHHHTSCCCCCBHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHTSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCCCCCCHHHHHHhCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHhCchhhhcChhHHHHHHHHHH
Confidence 344569999999999999999999999999 7888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHcccccCCCCchhHHHHHHHHHHHHHhhc-hhHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhhHHHHH
Q psy14548 85 SFDEILEFEKADSNSTDTLDKFCKALVKIRNRHS-DVVQTMAQGVMELKDSHDVDHQTENSIQYFLDRFYMSRISIRMLI 163 (482)
Q Consensus 85 sf~~l~~~~~~~~~~~~~~~~f~~~l~~~l~~~~-~~i~~la~g~~e~~~~~~~~~~~~e~~~~~Ld~i~~sri~~r~Li 163 (482)
+|++|....+...++.+..+.|++.+ |++++|. ++..+++.|+.++.+....+..+.+++++|+++++.++++.|+++
T Consensus 88 s~n~m~~~~~~~~~~~~~~~~f~~~~-HeLrt~~~~vPLt~i~g~~ell~~~~~~~~~~~~~~~~l~~~~~~~~~~rlli 166 (407)
T 2q8g_A 88 SLQELLDFKDKSAEDAKAIYDFTDTV-IRIRNRHNDVIPTMAQGVIEYKESFGVDPVTSQNVQYFLDRFYMSRISIRMLL 166 (407)
T ss_dssp HHHHHHTTSSSCTTCHHHHHHHHHHH-HHHHHHTTTHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhchhcCccchHHHHHHHHHH-HHHHhhhccchHHHHHHHHHHHHhhccCccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998877666666677899888 9999932 223445556666555432223345788999999988899999999
Q ss_pred HHHHHhhccccccCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEeeccCCCCCeEEEechhHHHH
Q psy14548 164 NQHTLLFGDELTRGDSSLRHIGCIDPQCDLIGVVKDAYENARFLCEQYYLSSPELKVTEHNEYEKGEPVRIIYVPSHLYH 243 (482)
Q Consensus 164 ~~~l~L~~~~~~~~~~~~~~ig~i~~~~~l~~li~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~L~~ 243 (482)
++++.+++......+..++.++...+.|++.++++++++.++..|...|+..+++.+.+.....+..+..+.+|+.+|.+
T Consensus 167 ~~ll~l~~~e~~~~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~v~~d~~~L~~ 246 (407)
T 2q8g_A 167 NQHSLLFGGKGKGSPSHRKHIGSINPNCNVLEVIKDGYENARRLCDLYYINSPELELEELNAKSPGQPIQVVYVPSHLYH 246 (407)
T ss_dssp HHHHHHHC----------CCBTTBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEESSSTTSCCEEEECHHHHHH
T ss_pred HHHHHHhccccccCCCCccccccccCCCCHHHHHHHHHHHHHHHHHHhcCCCCceEEEEeecCCCCCCeEEEEcHHHHHH
Confidence 99999986421000122346777888999999999999999999999999899988887542223456789999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCCCCEEEEEEecCceeEEEEEEcCCCCChhhHhhhhhcccccCCCCCCCCCCCCCCCCc
Q psy14548 244 MLFELFKNSMRATVEHHTDTDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVTDMLFHYMYSTAPQPSKSDAHTVPLAGY 323 (482)
Q Consensus 244 il~NLl~NAik~t~~~~~~~~~~p~I~v~~~~~~~~~~i~V~D~G~GI~~~~~~~if~~f~~t~~~~~~~~~~~~~~~G~ 323 (482)
||.|||+||+||+.+++......|+|.|.+...++.+.|+|+|+|+|||++.+++||++||+++..+..+.+.....+|+
T Consensus 247 il~NLl~NAik~t~~~~~~~~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~e~~~~if~~f~~~~~~~~~~~~~~~~~~G~ 326 (407)
T 2q8g_A 247 MVFELFKNAMRATMEHHANRGVYPPIQVHVTLGNEDLTVKMSDRGGGVPLRKIDRLFNYMYSTAPRPRVETSRAVPLAGF 326 (407)
T ss_dssp HHHHHHHHHHHHHHHHSTTTCCCCCEEEEEEECSSEEEEEEEECSCCCCHHHHGGGGCTTTTCCCCCCSSCCSCCCSSCT
T ss_pred HHHHHHHHHHHHHhhccccCCCCCCEEEEEEeCCCEEEEEEEecCCCCCHHHHHHHhCccccCCCCCCccccCCCCCCCc
Confidence 99999999999999876433445679999999999999999999999999999999999999765321111234455799
Q ss_pred ccCHHHHHHHHHHhCCEEEEEeecCCcEEEEEEeeCCCCcccccccccccccccccccCCCCCCCcccccccc
Q psy14548 324 GYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLKALSNEANELLPIFNKTSSKFYRATIPTGDWSSTQSACM 396 (482)
Q Consensus 324 GLGL~i~r~~~~~~gG~i~v~s~~g~Gt~f~i~lp~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (482)
||||+|||.++++|||+|.+.|.+|+||+|+|+||....+..+++|+++++++++|+...+++|||.|+++..
T Consensus 327 GLGL~Ivr~i~~~~gG~i~v~s~~g~Gt~f~i~LP~~~~~~~e~~p~~~~~~~~~~~~~~~~~d~~~~~~~~~ 399 (407)
T 2q8g_A 327 GYGLPISRLYAQYFQGDLKLYSLEGYGTDAVIYIKALSTDSIERLPVYNKAAWKHYNTNHEADDWCVPSREPK 399 (407)
T ss_dssp TCHHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEESSGGGCBCCCCCCSHHHHHHHSCC---CCSCCC-----
T ss_pred CCCHHHHHHHHHHhCCEEEEEEcCCCceEEEEEECCCCCCCCCCCCCcCchHHHhhccCCCcccCcCCCCCCC
Confidence 9999999999999999999999999999999999998878889999999999999999999999999987765
No 3
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A*
Probab=100.00 E-value=3.1e-56 Score=463.34 Aligned_cols=391 Identities=56% Similarity=0.941 Sum_probs=322.6
Q ss_pred hhHHHHHHHHHHHHHhhcCCCCcccHHHHHhcC-CCcChhhHHHHHHHHHHHHHHHHHHHHhcCChhhhcCChHHHHHHH
Q psy14548 3 FTLRRCASVSKMLDFYSQFNPSPLSIKQFIDFG-LSASEEKSFMFLRKELPVRLANIMKEIHLLPDNLLRMPSVGLVNEW 81 (482)
Q Consensus 3 ~~~~~~~~~~~~~~~y~~~~~~~~sl~~l~~~g-~~~~~~~s~~~l~~eLp~Rla~ri~~l~~lp~~l~~~~~i~~v~~~ 81 (482)
..|++..++.+.|++|++++++|+|++||++|| ...+...|++|+++|||+||++++++++.+|+.+..+|.+..+..+
T Consensus 17 ~~~~~~~~~~~~i~~y~~~~~~~~sl~~l~~~g~~~~~~~~s~~~l~~elPirLa~~~~~i~~~~~~~~~~~~~~~e~~~ 96 (419)
T 1y8o_A 17 LYFQGKQPVPKQIERYSRFSPSPLSIKQFLDFGRDNACEKTSYMFLRKELPVRLANTMREVNLLPDNLLNRPSVGLVQSW 96 (419)
T ss_dssp ---------CHHHHHHHHSCCCCCBHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHTSHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHhcCCCCCCCHHHHHHhcCCCCCHHHHHHHHHHHhHHHHHHHHHHHHhCCHhhhcChhHHHHHHH
Confidence 568777789999999999999999999999999 6777788999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcccccCCCCchhHHHHHHHHHHHHHhhch-hHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhhHH
Q psy14548 82 YAMSFDEILEFEKADSNSTDTLDKFCKALVKIRNRHSD-VVQTMAQGVMELKDSHDVDHQTENSIQYFLDRFYMSRISIR 160 (482)
Q Consensus 82 y~~sf~~l~~~~~~~~~~~~~~~~f~~~l~~~l~~~~~-~i~~la~g~~e~~~~~~~~~~~~e~~~~~Ld~i~~sri~~r 160 (482)
|.++|++|.+..+...+..++..+|+..+ |++++|++ ++.+++.|+.++.+....+....+++++|+++++.++++.|
T Consensus 97 l~~sf~~m~~~~~~~~~~~~~~~~f~~~~-HeLrtPL~~vi~~~i~g~~ell~~~~~~~~~~~~~~~~l~~i~~~~~~~r 175 (419)
T 1y8o_A 97 YMQSFLELLEYENKSPEDPQVLDNFLQVL-IKVRNRHNDVVPTMAQGVIEYKEKFGFDPFISTNIQYFLDRFYTNRISFR 175 (419)
T ss_dssp HHHHHHHHHGGGGCCTTCHHHHHHHHHHH-HHHHHHGGGHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhcCccchHHHHHHHHHH-HHHhcchhhhHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHH
Confidence 99999999998887666666677899877 99999988 56677788888776543333346789999999999999999
Q ss_pred HHHHHHHHhhccccccCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEeeccCCCCCeEEEechhH
Q psy14548 161 MLINQHTLLFGDELTRGDSSLRHIGCIDPQCDLIGVVKDAYENARFLCEQYYLSSPELKVTEHNEYEKGEPVRIIYVPSH 240 (482)
Q Consensus 161 ~Li~~~l~L~~~~~~~~~~~~~~ig~i~~~~~l~~li~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~ 240 (482)
++++++|.+++... ......++|.+++.+++.++++++++.++.+|..+|+..+++.+.+.....+..+..+.+|+.+
T Consensus 176 lli~~lL~l~~~~~--~~~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~v~~d~~~ 253 (419)
T 1y8o_A 176 MLINQHTLLFGGDT--NPVHPKHIGSIDPTCNVADVVKDAYETAKMLCEQYYLVAPELEVEEFNAKAPDKPIQVVYVPSH 253 (419)
T ss_dssp HHHHHHHHHHSCCS--SCSSTTSBTTBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEETTSTTSCCEEEECHHH
T ss_pred HHHHHHHHHhcccc--cCCCCCccccccCcCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeeecCCCCCCeEEEEcHHH
Confidence 99999998886532 1233456777888999999999999999999999999889998887543333456789999999
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCC-CCCCEEEEEEecCceeEEEEEEcCCCCChhhHhhhhhcccccCCCCCCCCCCCCC
Q psy14548 241 LYHMLFELFKNSMRATVEHHTDTD-VLPPIEVSVVRGKEDICVKMSDKGGGIPRSVTDMLFHYMYSTAPQPSKSDAHTVP 319 (482)
Q Consensus 241 L~~il~NLl~NAik~t~~~~~~~~-~~p~I~v~~~~~~~~~~i~V~D~G~GI~~~~~~~if~~f~~t~~~~~~~~~~~~~ 319 (482)
|.|||.|||+||+||+.+++.... ..++|.|.+...++.+.|+|+|+|+|||++.+++||++||+++..+..+.+....
T Consensus 254 L~~vl~NLl~NAik~~~~~~~~~~~~~~~I~I~~~~~~~~v~I~V~D~G~GI~~e~l~~iF~~f~~~~~~~~~~~~~~~~ 333 (419)
T 1y8o_A 254 LFHMLFELFKNSMRATVELYEDRKEGYPAVKTLVTLGKEDLSIKISDLGGGVPLRKIDRLFNYMYSTAPRPSLEPTRAAP 333 (419)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCSSCCCCEEEEEEECSSEEEEEEEECSCCCCHHHHGGGGCTTTC-------------C
T ss_pred HHHHHHHHHHHHHHHHHhhccccCCCCCCEEEEEEeCCCEEEEEEEECCCCCCHHHHHHHhCcccccCCCCCccccCCCC
Confidence 999999999999999988753211 1356999999999999999999999999999999999999976432111123345
Q ss_pred CCCcccCHHHHHHHHHHhCCEEEEEeecCCcEEEEEEeeCCCCcccccccccccccccccccCCCCCCCcccccccc
Q psy14548 320 LAGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLKALSNEANELLPIFNKTSSKFYRATIPTGDWSSTQSACM 396 (482)
Q Consensus 320 ~~G~GLGL~i~r~~~~~~gG~i~v~s~~g~Gt~f~i~lp~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (482)
.+|+||||+|||.++++|||+|.+.|.+|+||+|+|+||....+..+++|+++++++++|+...+++|||.|+++..
T Consensus 334 ~~G~GLGL~I~k~iv~~~gG~I~v~s~~g~Gt~f~i~LP~~~~~~~e~~p~~~~~~~~~~~~~~~~~dw~~~~~~~~ 410 (419)
T 1y8o_A 334 LAGFGYGLPISRLYARYFQGDLKLYSMEGVGTDAVIYLKALSSESFERLPVFNKSAWRHYKTTPEADDWSNPSSEPR 410 (419)
T ss_dssp C--CTTHHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEESCGGGCBCCCCCCSHHHHHHHSCCCCCCSSCCCCSSCC
T ss_pred cCCeecCHHHHHHHHHHhCCEEEEEecCCCCEEEEEEecCCCCCcCCCCCccChhHHHHhccCCCCccccccCCCCC
Confidence 67999999999999999999999999999999999999999878889999999999999999999999999988765
No 4
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A*
Probab=100.00 E-value=1.2e-55 Score=455.60 Aligned_cols=383 Identities=54% Similarity=0.949 Sum_probs=309.8
Q ss_pred HHHHHHHHhhcCCCCcccHHHHHhcC-CCcChhhHHHHHHHHHHHHHHHHHHHHhcCChhhhcCChHHHHHHHHHHHHHH
Q psy14548 10 SVSKMLDFYSQFNPSPLSIKQFIDFG-LSASEEKSFMFLRKELPVRLANIMKEIHLLPDNLLRMPSVGLVNEWYAMSFDE 88 (482)
Q Consensus 10 ~~~~~~~~y~~~~~~~~sl~~l~~~g-~~~~~~~s~~~l~~eLp~Rla~ri~~l~~lp~~l~~~~~i~~v~~~y~~sf~~ 88 (482)
++++.|++|++++|+|+|++||++|| .+.++.+|++|+++|||+|+|+++++++.+|+.+..++.+.++.++|.++|++
T Consensus 2 ~~~~~~~~~~~~~~~~~sl~~~~~fg~~~~~~~~s~~~l~~el~~rla~~~~~l~~l~~~l~~~~~~~ev~~~~~~~~~~ 81 (394)
T 2btz_A 2 SAPKYIEHFSKFSPSPLSMKQFLDFGSSNACEKTSFTFLRQELPVRLANIMKEINLLPDRVLSTPSVQLVQSWYVQSLLD 81 (394)
T ss_dssp CHHHHHHHHTTSCCCCCBHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHSHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHhCCCCCCcCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhcCccHHHHHHHHHHHHHH
Confidence 47889999999999999999999999 78888899999999999999999999999999999999999999999999999
Q ss_pred HHcccccCCCCchhHHHHHHHHHHHHHhhchhH-HHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhhHHHHHHHHH
Q psy14548 89 ILEFEKADSNSTDTLDKFCKALVKIRNRHSDVV-QTMAQGVMELKDSHDVDHQTENSIQYFLDRFYMSRISIRMLINQHT 167 (482)
Q Consensus 89 l~~~~~~~~~~~~~~~~f~~~l~~~l~~~~~~i-~~la~g~~e~~~~~~~~~~~~e~~~~~Ld~i~~sri~~r~Li~~~l 167 (482)
|.+..+...+..++.+.|+. ++|++++|++.+ .+++.|+.++......+....+++++|+++++..+.+.|+++++++
T Consensus 82 l~~~~~~~~~~~~~~~~~~~-~~HeLrtpl~~vPlt~i~g~~ell~~~~~~~~~~~~~~~~l~~~~i~~~~~rlli~~ll 160 (394)
T 2btz_A 82 IMEFLDKDPEDHRTLSQFTD-ALVTIRNRHNDVVPTMAQGVLEYKDTYGDDPVSNQNIQYFLDRFYLSRISIRMLINQHT 160 (394)
T ss_dssp HHTTTTCCTTSTTTTHHHHH-HHHHHHHHHTTHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccccCccchHHHHHHHH-HHHHHHhhcchhHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 99987765444444445665 559999965555 6677777777654323333456788899998888999999999999
Q ss_pred HhhccccccCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEeeccCCCCCeEEEechhHHHHHHHH
Q psy14548 168 LLFGDELTRGDSSLRHIGCIDPQCDLIGVVKDAYENARFLCEQYYLSSPELKVTEHNEYEKGEPVRIIYVPSHLYHMLFE 247 (482)
Q Consensus 168 ~L~~~~~~~~~~~~~~ig~i~~~~~l~~li~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~L~~il~N 247 (482)
.+++... .......+|.+++.|++.++++++++.++..|..+|+.++++.+.+.....+..+..+.+|+.+|.+|+.|
T Consensus 161 ~l~~~~~--~~~~~~~~g~i~~~~~l~~li~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~v~~d~~~L~~il~N 238 (394)
T 2btz_A 161 LIFDGST--NPAHPKHIGSIDPNCNVSEVVKDAYDMAKLLCDKYYMASPDLEIQEINAANSKQPIHMVYVPSHLYHMLFE 238 (394)
T ss_dssp HHCC----------CCBTTBEEEEEHHHHHHHHHHHHHHHHHHHHSCCCCEEEEEEETTSTTSCCEEEECHHHHHHHHHH
T ss_pred HHhcccc--cCCCCcccceecCCCCHHHHHHHHHHHHHHHHHHhhCCCCCeEEEEeccCCCCCCeEEEecHHHHHHHHHH
Confidence 9987532 01234467888899999999999999999999999998888888864321234567899999999999999
Q ss_pred HHHHHHHHhhhcCCCCCCCCCEEEEEEecCceeEEEEEEcCCCCChhhHhhhhhcccccCCCCCCCCCCCCCCCCcccCH
Q psy14548 248 LFKNSMRATVEHHTDTDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVTDMLFHYMYSTAPQPSKSDAHTVPLAGYGYGL 327 (482)
Q Consensus 248 Ll~NAik~t~~~~~~~~~~p~I~v~~~~~~~~~~i~V~D~G~GI~~~~~~~if~~f~~t~~~~~~~~~~~~~~~G~GLGL 327 (482)
||+||+||+.+++......|+|.|.+...++.+.|+|+|+|+|||++.+++||++||+++..+..+ +.....+|+||||
T Consensus 239 Ll~NAik~~~~~~~~~~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~~~~~~iF~~f~~~~~~~~~~-~~~~~~~G~GLGL 317 (394)
T 2btz_A 239 LFKNAMRATVESHESSLILPPIKVMVALGEEDLSIKMSDRGGGVPLRKIERLFSYMYSTAPTPQPG-TGGTPLAGFGYGL 317 (394)
T ss_dssp HHHHHHHHHHHTTTTCSCCCCEEEEEEECSSEEEEEEEECSCCCCHHHHHHHTCTTTTCCC---------------CCHH
T ss_pred HHHHHHHHhhhccccCCCCCCEEEEEEeCCCEEEEEEEeCCCCCCHHHHHHHhcccccCCCCCCcc-cCCCCCCCccCCH
Confidence 999999999987643334567999999999999999999999999999999999999976421000 1233457999999
Q ss_pred HHHHHHHHHhCCEEEEEeecCCcEEEEEEeeCCCCcccccccccccccccccccCCCCCCCcccccccc
Q psy14548 328 PISRLYARYFHGDIMLLSCDGLGTDAIIYLKALSNEANELLPIFNKTSSKFYRATIPTGDWSSTQSACM 396 (482)
Q Consensus 328 ~i~r~~~~~~gG~i~v~s~~g~Gt~f~i~lp~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (482)
+|||.++++|||+|.+.|.+|+||+|+|+||....+..+++|+++++++++|+...+++|||.|+.+..
T Consensus 318 ~i~~~i~~~~gG~i~v~s~~g~Gt~f~i~lP~~~~~~~e~~p~~~~~~~~~~~~~~~~~d~~~~~~~~~ 386 (394)
T 2btz_A 318 PISRLYAKYFQGDLQLFSMEGFGTDAVIYLKALSTDSVERLPVYNKSAWRHYQTIQEAGDWCVPSTEPK 386 (394)
T ss_dssp HHHHHHHHHTTCEEEEEEETTTEEEEEEEEESSTTTCBCCCCCCCHHHHGGGCCCCCSCSCC-------
T ss_pred HHHHHHHHHhCCEEEEEecCCCceEEEEEecCCCCCCCCCCCccCcchhhhccCCCCCCCCCCCCCCCc
Confidence 999999999999999999999999999999999878889999999999999999999999999988765
No 5
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A*
Probab=100.00 E-value=1e-48 Score=402.96 Aligned_cols=332 Identities=30% Similarity=0.532 Sum_probs=273.2
Q ss_pred HHHHHHhhcCCCCcccHHHHHhcCCCc---ChhhHHHHHHHHHHHHHHHHHHHHhcCChhhhcCChHHHHHHHHHHHHHH
Q psy14548 12 SKMLDFYSQFNPSPLSIKQFIDFGLSA---SEEKSFMFLRKELPVRLANIMKEIHLLPDNLLRMPSVGLVNEWYAMSFDE 88 (482)
Q Consensus 12 ~~~~~~y~~~~~~~~sl~~l~~~g~~~---~~~~s~~~l~~eLp~Rla~ri~~l~~lp~~l~~~~~i~~v~~~y~~sf~~ 88 (482)
+..|.+|++++++|+||+||++||++. ....+++|+++|||+|+|+|+++++.||+.+..+|.+..++++|.++|++
T Consensus 26 ~~~i~~~~~~~~~~~sl~~l~~~g~~~~~~~ll~s~~~l~~elp~rla~ri~~l~~lp~~~~~~~~i~~~~~~~~~~~~~ 105 (388)
T 1gkz_A 26 QSAIDVVAEKPSVRLTPTMMLYSGRSQDGSHLLKSGRYLQQELPVRIAHRIKGFRSLPFIIGCNPTILHVHELYIRAFQK 105 (388)
T ss_dssp ------------CEESSSCEECCCCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHcCCCCCcCHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHhhhcCchHHHHHHHHHHHHHH
Confidence 578899999999999999999999543 23579999999999999999999999999999999999999999999999
Q ss_pred HHcccccCCCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhhHHHHHHHHHH
Q psy14548 89 ILEFEKADSNSTDTLDKFCKALVKIRNRHSDVVQTMAQGVMELKDSHDVDHQTENSIQYFLDRFYMSRISIRMLINQHTL 168 (482)
Q Consensus 89 l~~~~~~~~~~~~~~~~f~~~l~~~l~~~~~~i~~la~g~~e~~~~~~~~~~~~e~~~~~Ld~i~~sri~~r~Li~~~l~ 168 (482)
+.++.+. ...+..++|.++++...+++.+++..++.|+.++.+.. .++++.++|++.+.+++.+++.++++++.
T Consensus 106 l~~~~~~--~~~~~~~~~~~~l~~i~helrtpL~~i~~g~~~l~~~~----~~~~~~~~~l~~i~~~~~~l~~li~~ll~ 179 (388)
T 1gkz_A 106 LTDFPPI--KDQADEAQYCQLVRQLLDDHKDVVTLLAEGLRESRKHI----EDEKLVRYFLDKTLTSRLGIRMLATHHLA 179 (388)
T ss_dssp HHHSCCC--CSHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHSSSSC----CSTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCcCC--CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhc----cCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9988653 35667788999999999999999999999999887642 23678899999999999999999999999
Q ss_pred hhccccccCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEeeccCCCCCeEEEechhHHHHHHHHH
Q psy14548 169 LFGDELTRGDSSLRHIGCIDPQCDLIGVVKDAYENARFLCEQYYLSSPELKVTEHNEYEKGEPVRIIYVPSHLYHMLFEL 248 (482)
Q Consensus 169 L~~~~~~~~~~~~~~ig~i~~~~~l~~li~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~L~~il~NL 248 (482)
+.+ .+.+.++.+.+.|++.++++++++.++..|...|+..+.+.+... .+..+.+|+.+|.+|+.||
T Consensus 180 l~~-------~~~~~~~~~~~~~~l~~li~~~~~~~~~~~~~~~g~~~~i~i~~~------~~~~~~~~~~~L~~il~NL 246 (388)
T 1gkz_A 180 LHE-------DKPDFVGIICTRLSPKKIIEKWVDFARRLCEHKYGNAPRVRINGH------VAARFPFIPMPLDYILPEL 246 (388)
T ss_dssp TTS-------CCTTEETTEEEEECHHHHHHHHHHHHHHHHHHHHSCCCCEEEEES------TTCCEEECCHHHHHHHHHH
T ss_pred Hhc-------cCCCccceecCCCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEcc------CCCceeecHHHHHHHHHHH
Confidence 985 345667788889999999999999999999998887778777752 3456889999999999999
Q ss_pred HHHHHHHhhhcCCCC-CCCCCEEEEEEecCceeEEEEEEcCCCCChhhHhhhhhcccccCCCCCC--------------C
Q psy14548 249 FKNSMRATVEHHTDT-DVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVTDMLFHYMYSTAPQPSK--------------S 313 (482)
Q Consensus 249 l~NAik~t~~~~~~~-~~~p~I~v~~~~~~~~~~i~V~D~G~GI~~~~~~~if~~f~~t~~~~~~--------------~ 313 (482)
|+||+||+.+++... ...|+|.|.+...++.+.|+|+|+|+|||++.+++||++||+++..... .
T Consensus 247 l~NAik~~~~~~~~~~~~~~~I~I~~~~~~~~v~i~V~D~G~GI~~~~~~~iF~~f~~~~~~~~~~~~~~~~~~~~~~~~ 326 (388)
T 1gkz_A 247 LKNAMRATMESHLDTPYNVPDVVITIANNDVDLIIRISDRGGGIAHKDLDRVMDYHFTTAEASTQDPRISPLFGHLDMHS 326 (388)
T ss_dssp HHHHHHHHHHTCTTCTTSCCCEEEEEEECSSEEEEEEECCSCCCCTTTTTTTTSTTCCCC--------------------
T ss_pred HHHHHHHhhccccCCCCCCCCEEEEEEeCCCEEEEEEEEeCCCcCHHHHHHhcCcccccCCCcccccccccchhhccccc
Confidence 999999999876322 2345799999999999999999999999999999999999998653100 0
Q ss_pred CCCCCCCCCcccCHHHHHHHHHHhCCEEEEEeecCCcEEEEEEeeCCCC
Q psy14548 314 DAHTVPLAGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLKALSN 362 (482)
Q Consensus 314 ~~~~~~~~G~GLGL~i~r~~~~~~gG~i~v~s~~g~Gt~f~i~lp~~~~ 362 (482)
.+...+.+|+||||+|||.++++|||+|.+.|.+|+||+|+|+||....
T Consensus 327 ~~~~~~~~G~GLGL~i~r~i~~~~gG~i~v~s~~g~Gt~f~i~LP~~~~ 375 (388)
T 1gkz_A 327 GGQSGPMHGFGFGLPTSRAYAEYLGGSLQLQSLQGIGTDVYLRLRHIDG 375 (388)
T ss_dssp -----CCSCSSCHHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEECSSS
T ss_pred ccCCCCcCCccCCHHHHHHHHHHhCCEEEEEecCCCcEEEEEEecCCCC
Confidence 1123445799999999999999999999999999999999999998754
No 6
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A*
Probab=99.97 E-value=3.2e-30 Score=249.30 Aligned_cols=230 Identities=17% Similarity=0.232 Sum_probs=175.1
Q ss_pred HHHHHHHHHHHHHhhchhHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhhHHHHHHHHHHhhccccccCCCCCC
Q psy14548 103 LDKFCKALVKIRNRHSDVVQTMAQGVMELKDSHDVDHQTENSIQYFLDRFYMSRISIRMLINQHTLLFGDELTRGDSSLR 182 (482)
Q Consensus 103 ~~~f~~~l~~~l~~~~~~i~~la~g~~e~~~~~~~~~~~~e~~~~~Ld~i~~sri~~r~Li~~~l~L~~~~~~~~~~~~~ 182 (482)
..+|...++|++++|++.|...++.+.+.... .+.++..++++.+..+...+..++++++.+.+.........
T Consensus 20 ~~~~~~~isHelrtPL~~i~~~~~~l~~~~~~-----~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~~~-- 92 (258)
T 2c2a_A 20 KTEFIANISHELRTPLTAIKAYAETIYNSLGE-----LDLSTLKEFLEVIIDQSNHLENLLNELLDFSRLERKSLQIN-- 92 (258)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHHTGGG-----CCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCC--
T ss_pred HHHHHHHhhhhhcCCHHHHHHHHHHHHhhccC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccCc--
Confidence 46899999999999999999888876553322 13345678888888777777778999988876432111111
Q ss_pred cccccCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEeeccCCCCCeEEEechhHHHHHHHHHHHHHHHHhhhcCCC
Q psy14548 183 HIGCIDPQCDLIGVVKDAYENARFLCEQYYLSSPELKVTEHNEYEKGEPVRIIYVPSHLYHMLFELFKNSMRATVEHHTD 262 (482)
Q Consensus 183 ~ig~i~~~~~l~~li~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~L~~il~NLl~NAik~t~~~~~~ 262 (482)
...+++.++++++++.+...+.. ..+.+.+... ...+..+.+|+..|.+|+.||++||+||+..+..
T Consensus 93 -----~~~~~l~~~~~~~~~~~~~~~~~-----~~i~~~~~~~--~~~~~~~~~d~~~l~~il~NLl~NAik~~~~~~~- 159 (258)
T 2c2a_A 93 -----REKVDLCDLVESAVNAIKEFASS-----HNVNVLFESN--VPCPVEAYIDPTRIRQVLLNLLNNGVKYSKKDAP- 159 (258)
T ss_dssp -----CEEEEHHHHHHHHHHHHHHHHHH-----TTCEEEEEES--SCSCCEEEECHHHHHHHHHHHHHHHHHTCCTTCT-
T ss_pred -----cceecHHHHHHHHHHHHHHHHHH-----cCcEEEeecC--CCCCceEEeCHHHHHHHHHHHHHHHHhcCcCCCC-
Confidence 23459999999999988876553 2444444332 2335678899999999999999999999865432
Q ss_pred CCCCCCEEEEEEecCceeEEEEEEcCCCCChhhHhhhhhcccccCCCCCCCCCCCCCCCCcccCHHHHHHHHHHhCCEEE
Q psy14548 263 TDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVTDMLFHYMYSTAPQPSKSDAHTVPLAGYGYGLPISRLYARYFHGDIM 342 (482)
Q Consensus 263 ~~~~p~I~v~~~~~~~~~~i~V~D~G~GI~~~~~~~if~~f~~t~~~~~~~~~~~~~~~G~GLGL~i~r~~~~~~gG~i~ 342 (482)
...|.|.+...++.+.|.|+|+|+|||++.++++|++||+++.. ......|+||||+|||.+++.|||+|+
T Consensus 160 ---~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~------~~~~~~G~GLGL~i~~~iv~~~gG~i~ 230 (258)
T 2c2a_A 160 ---DKYVKVILDEKDGGVLIIVEDNGIGIPDHAKDRIFEQFYRVDSS------LTYEVPGTGLGLAITKEIVELHGGRIW 230 (258)
T ss_dssp ---TCEEEEEEEEETTEEEEEEEECSSCCCGGGTTGGGSTTCCCC---------------CCCTHHHHHHHHHHTTCEEE
T ss_pred ---ceeEEEEEecCCCeEEEEEEecCCCCCHHHHHhhccccccCCCC------CCCCCCCcchHHHHHHHHHHHcCCEEE
Confidence 12388888888889999999999999999999999999996431 223346999999999999999999999
Q ss_pred EEeecCCcEEEEEEeeCCC
Q psy14548 343 LLSCDGLGTDAIIYLKALS 361 (482)
Q Consensus 343 v~s~~g~Gt~f~i~lp~~~ 361 (482)
+.|.+|+||+|+|+||...
T Consensus 231 v~s~~~~Gt~f~i~lP~~~ 249 (258)
T 2c2a_A 231 VESEVGKGSRFFVWIPKDR 249 (258)
T ss_dssp EEEETTTEEEEEEEEECCC
T ss_pred EEecCCCCcEEEEEeeCCC
Confidence 9999999999999999753
No 7
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus}
Probab=99.95 E-value=2.2e-26 Score=223.09 Aligned_cols=220 Identities=15% Similarity=0.096 Sum_probs=174.9
Q ss_pred hHHHHHHHHHHHHHhhchhHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhhHHHHHHHHHHhhccccccCCCCC
Q psy14548 102 TLDKFCKALVKIRNRHSDVVQTMAQGVMELKDSHDVDHQTENSIQYFLDRFYMSRISIRMLINQHTLLFGDELTRGDSSL 181 (482)
Q Consensus 102 ~~~~f~~~l~~~l~~~~~~i~~la~g~~e~~~~~~~~~~~~e~~~~~Ld~i~~sri~~r~Li~~~l~L~~~~~~~~~~~~ 181 (482)
...+|...++|++++|++.|..+++.+.+. ....+....+++.+..+...+..++++++.+.+........
T Consensus 39 ~~~~~~~~l~Helr~pL~~i~~~~~~l~~~-------~~~~~~~~~~l~~i~~~~~~l~~~i~~l~~~~~~~~~~~~~-- 109 (268)
T 4ew8_A 39 LKRDFVGNVSYELRTPLTTIIGYSELLERA-------DGISERGRNHVAAVRAAATQLARSIDDVLDMAQIDAGEMAL-- 109 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-------SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCC--
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhhc-------cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcce--
Confidence 346899999999999999998877654331 12356778889999887777777888888887643211111
Q ss_pred CcccccCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEeeccCCCCCeEEEechhHHHHHHHHHHHHHHHHhhhcCC
Q psy14548 182 RHIGCIDPQCDLIGVVKDAYENARFLCEQYYLSSPELKVTEHNEYEKGEPVRIIYVPSHLYHMLFELFKNSMRATVEHHT 261 (482)
Q Consensus 182 ~~ig~i~~~~~l~~li~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~L~~il~NLl~NAik~t~~~~~ 261 (482)
....+++.++++++++.+...+.. ..+.+.+.. + .....+.+|+..|.+|+.||+.||++|+..++.
T Consensus 110 -----~~~~~~l~~~l~~~~~~~~~~~~~-----~~i~i~~~~--~-~~~~~v~~d~~~l~~il~nLl~NA~~~~~~~~~ 176 (268)
T 4ew8_A 110 -----EIEDIRVSDLLLNAQERALKDAQL-----GGVTLAVEC--E-EDVGLIRGDGKRLAQTLDHLVENALRQTPPGGR 176 (268)
T ss_dssp -----CCEEEEHHHHHHHHHHHHHHHHHH-----TTCEEEEEC--C-TTSCEEEECHHHHHHHHHHHHHHHHHHSCTTCE
T ss_pred -----eeeeccHHHHHHHHHHHHHhhhhc-----cCceEEEEc--C-CCCceEecCHHHHHHHHHHHHHHHHHhCCCCCE
Confidence 123458999999999888775543 345555443 2 223468999999999999999999999976543
Q ss_pred CCCCCCCEEEEEEecCceeEEEEEEcCCCCChhhHhhhhhcccccCCCCCCCCCCCCCCCCcccCHHHHHHHHHHhCCEE
Q psy14548 262 DTDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVTDMLFHYMYSTAPQPSKSDAHTVPLAGYGYGLPISRLYARYFHGDI 341 (482)
Q Consensus 262 ~~~~~p~I~v~~~~~~~~~~i~V~D~G~GI~~~~~~~if~~f~~t~~~~~~~~~~~~~~~G~GLGL~i~r~~~~~~gG~i 341 (482)
|.|.+...++.+.|.|+|+|+||+++.++++|++|++++. .|+|+||++|+.+++.|||+|
T Consensus 177 -------I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~~~~~~~------------~g~GlGL~i~~~~~~~~gG~i 237 (268)
T 4ew8_A 177 -------VTLSARRALGEVRLDVSDTGRGVPFHVQAHIFDRFVGRDR------------GGPGLGLALVKALVELHGGWV 237 (268)
T ss_dssp -------EEEEEEECSSEEEEEEEESSCCCCHHHHTTTTSTTCCCSS------------CCCTTHHHHHHHHHHHTTCEE
T ss_pred -------EEEEEEecCCEEEEEEEcCCCCCCHHHHHHHHHHHhcCCC------------CCCcccHHHHHHHHHHcCCEE
Confidence 9999999999999999999999999999999999997432 589999999999999999999
Q ss_pred EEEeecCCcEEEEEEeeCCCC
Q psy14548 342 MLLSCDGLGTDAIIYLKALSN 362 (482)
Q Consensus 342 ~v~s~~g~Gt~f~i~lp~~~~ 362 (482)
.+.+.++.||+|++.||....
T Consensus 238 ~i~s~~~~Gt~~~i~lP~~~~ 258 (268)
T 4ew8_A 238 ALESEPGNGSTFTCHLPETQQ 258 (268)
T ss_dssp EEEECTTSCEEEEEEEECCC-
T ss_pred EEEecCCCCEEEEEEecCCCC
Confidence 999999999999999997643
No 8
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli}
Probab=99.95 E-value=6.6e-28 Score=226.70 Aligned_cols=218 Identities=12% Similarity=0.094 Sum_probs=114.7
Q ss_pred HHHHHHHHHHHHHhhchhHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhhHHHHHHHHHHhhccccccCCCCCC
Q psy14548 103 LDKFCKALVKIRNRHSDVVQTMAQGVMELKDSHDVDHQTENSIQYFLDRFYMSRISIRMLINQHTLLFGDELTRGDSSLR 182 (482)
Q Consensus 103 ~~~f~~~l~~~l~~~~~~i~~la~g~~e~~~~~~~~~~~~e~~~~~Ld~i~~sri~~r~Li~~~l~L~~~~~~~~~~~~~ 182 (482)
.++|...++|++++|++.|...++.+.... .+.+...++++.+..+...+..++++++.+.+.......
T Consensus 2 ~~~~~~~~~Helr~pL~~i~~~~~~l~~~~-------~~~~~~~~~l~~i~~~~~~l~~~i~~l~~~~~~~~~~~~---- 70 (222)
T 3jz3_A 2 ERRFTSDAAHELRSPLTALKVQTEVAQLSD-------DDPQARKKALLQLHSGIDRATRLVDQLLTLSRLDSLDNL---- 70 (222)
T ss_dssp ---------------------------------------------CEECCC-CHHHHHHHHHHHHHHHTCCCSTTS----
T ss_pred HHHHHHHHhHHhcCcHHHHHHHHHHHhhcc-------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCc----
Confidence 358999999999999999987776433211 123444555666665555666678888888764321111
Q ss_pred cccccCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEeeccCCCCCeEEEechhHHHHHHHHHHHHHHHHhhhcCCC
Q psy14548 183 HIGCIDPQCDLIGVVKDAYENARFLCEQYYLSSPELKVTEHNEYEKGEPVRIIYVPSHLYHMLFELFKNSMRATVEHHTD 262 (482)
Q Consensus 183 ~ig~i~~~~~l~~li~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~L~~il~NLl~NAik~t~~~~~~ 262 (482)
.....+++.+++++++..+...+.. ..+.+.+.. +.....+.+|+..|.+|+.||+.||++|+..++.
T Consensus 71 ---~~~~~~~l~~~~~~~~~~~~~~~~~-----~~i~~~~~~---~~~~~~~~~d~~~l~~il~nLl~NAi~~~~~~~~- 138 (222)
T 3jz3_A 71 ---QDVAEIPLEDLLQSSVMDIYHTAQQ-----AKIDVRLTL---NAHSIKRTGQPLLLSLLVRNLLDNAVRYSPQGSV- 138 (222)
T ss_dssp ---TTCEEEEHHHHHHHHHHHHHHHHHH-----TTCEEEEEE---SSCSCEEEECHHHHHHHHHHHHHHHHHTCCTTCE-
T ss_pred ---cCcccCCHHHHHHHHHHHHHHHHHH-----hCCeEEEee---CCcceEEecCHHHHHHHHHHHHHHHHHcCCCCCe-
Confidence 1223559999999999888776543 344454443 2334678899999999999999999999976643
Q ss_pred CCCCCCEEEEEEecCceeEEEEEEcCCCCChhhHhhhhhcccccCCCCCCCCCCCCCCCCcccCHHHHHHHHHHhCCEEE
Q psy14548 263 TDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVTDMLFHYMYSTAPQPSKSDAHTVPLAGYGYGLPISRLYARYFHGDIM 342 (482)
Q Consensus 263 ~~~~p~I~v~~~~~~~~~~i~V~D~G~GI~~~~~~~if~~f~~t~~~~~~~~~~~~~~~G~GLGL~i~r~~~~~~gG~i~ 342 (482)
|.|.+...+ |.|+|+|+||+++.++++|++||++.. ....|+||||++|+.+++.|||+|.
T Consensus 139 ------i~i~~~~~~----i~V~D~G~Gi~~~~~~~if~~f~~~~~---------~~~~g~GlGL~i~~~i~~~~gG~i~ 199 (222)
T 3jz3_A 139 ------VDVTLNADN----FIVRDNGPGVTPEALARIGERFYRPPG---------QTATGSGLGLSIVQRIAKLHGMNVE 199 (222)
T ss_dssp ------EEEEECSSE----EEEECSCC-----------------------------------CTHHHHHHHHHHTTCEEE
T ss_pred ------EEEEEccCe----EEEEECCCCCCHHHHHHHHhhhccCCC---------CCCCcccccHHHHHHHHHHcCCEEE
Confidence 666664332 889999999999999999999998532 2235999999999999999999999
Q ss_pred EEeecCCcEEEEEEeeCCCC
Q psy14548 343 LLSCDGLGTDAIIYLKALSN 362 (482)
Q Consensus 343 v~s~~g~Gt~f~i~lp~~~~ 362 (482)
+.|.+++||+|++++|..+.
T Consensus 200 i~s~~~~Gt~v~~~~P~~~~ 219 (222)
T 3jz3_A 200 FGNAEQGGFEAKVSWLEHHH 219 (222)
T ss_dssp CCBCTTSSBEEEEECCCC--
T ss_pred EEcCCCCcEEEEEeecCCCC
Confidence 99999999999999997643
No 9
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus}
Probab=99.95 E-value=2e-26 Score=219.73 Aligned_cols=217 Identities=14% Similarity=0.164 Sum_probs=169.3
Q ss_pred chhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhhHHHHHHHHHHhhccccccCCC
Q psy14548 100 TDTLDKFCKALVKIRNRHSDVVQTMAQGVMELKDSHDVDHQTENSIQYFLDRFYMSRISIRMLINQHTLLFGDELTRGDS 179 (482)
Q Consensus 100 ~~~~~~f~~~l~~~l~~~~~~i~~la~g~~e~~~~~~~~~~~~e~~~~~Ld~i~~sri~~r~Li~~~l~L~~~~~~~~~~ 179 (482)
.+...+|...++|++++|++.|..+++.+.+ . ..+.++..++++.+..+...+..++++++.+.+... .
T Consensus 11 ~~~~~~~~~~l~Helr~pL~~i~~~~~~l~~----~---~~~~~~~~~~~~~i~~~~~~l~~~i~~l~~~~~~~~----~ 79 (244)
T 3d36_A 11 MEAVTHLAASISHEIRNPLTAARGFIQLIEE----Q---PLAADKRRQYARIAIEELDRAEAIITDYLTFAKPAP----E 79 (244)
T ss_dssp ------CCCCHHHHHHHHHHHHHHHHHHGGG----C---TTCHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSC----C
T ss_pred HHHHHHHHHHhhHHhccHHHHHHHHHHHHHh----c---ccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----C
Confidence 4456788999999999999998777664321 1 234677888999988777777778888877764321 1
Q ss_pred CCCcccccCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEeeccCCCCCeEEEechhHHHHHHHHHHHHHHHHhhhc
Q psy14548 180 SLRHIGCIDPQCDLIGVVKDAYENARFLCEQYYLSSPELKVTEHNEYEKGEPVRIIYVPSHLYHMLFELFKNSMRATVEH 259 (482)
Q Consensus 180 ~~~~ig~i~~~~~l~~li~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~L~~il~NLl~NAik~t~~~ 259 (482)
....+++..+++++++.+...+. ...+.+.... .+..+.+|+..|.+|+.||+.||++|+..+
T Consensus 80 -------~~~~~~l~~~l~~~~~~~~~~~~-----~~~i~~~~~~-----~~~~~~~d~~~l~~il~nLl~NA~~~~~~~ 142 (244)
T 3d36_A 80 -------TPEKLNVKLEIERVIDILRPLAN-----MSCVDIQATL-----APFSVIGEREKFRQCLLNVMKNAIEAMPNG 142 (244)
T ss_dssp -------CCEEEEHHHHHHHHHHHHHHHHT-----TTTEEEEEEC-----CCCEEEECHHHHHHHHHHHHHHHHHTCTTC
T ss_pred -------CcchhhHHHHHHHHHHHHHHHHH-----hcCeEEeccC-----CCceEEeCHHHHHHHHHHHHHHHHHhccCC
Confidence 12345899999999988876543 2344444432 236789999999999999999999999665
Q ss_pred CCCCCCCCCEEEEEEecCceeEEEEEEcCCCCChhhHhhhhhcccccCCCCCCCCCCCCCCCCcccCHHHHHHHHHHhCC
Q psy14548 260 HTDTDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVTDMLFHYMYSTAPQPSKSDAHTVPLAGYGYGLPISRLYARYFHG 339 (482)
Q Consensus 260 ~~~~~~~p~I~v~~~~~~~~~~i~V~D~G~GI~~~~~~~if~~f~~t~~~~~~~~~~~~~~~G~GLGL~i~r~~~~~~gG 339 (482)
+. |.|.+...++.+.|.|+|+|+||+++.++++|++||+++. ..|.|+||++|+.+++.|||
T Consensus 143 ~~-------i~i~~~~~~~~~~i~i~D~G~gi~~~~~~~if~~~~~~~~-----------~~g~GlGL~i~~~i~~~~gG 204 (244)
T 3d36_A 143 GT-------LQVYVSIDNGRVLIRIADTGVGMTKEQLERLGEPYFTTKG-----------VKGTGLGMMVVYRIIESMNG 204 (244)
T ss_dssp EE-------EEEEEEEETTEEEEEEEECSSCCCHHHHHHTTSTTCCSSG-----------GGCCSCHHHHHHHHHHHTTC
T ss_pred Ce-------EEEEEEEeCCEEEEEEEecCCCCCHHHHHHHhcccccCCC-----------CCCcchhHHHHHHHHHHcCC
Confidence 54 9999998999999999999999999999999999998542 25899999999999999999
Q ss_pred EEEEEeecCCcEEEEEEeeCCCC
Q psy14548 340 DIMLLSCDGLGTDAIIYLKALSN 362 (482)
Q Consensus 340 ~i~v~s~~g~Gt~f~i~lp~~~~ 362 (482)
+|.+.+.++.|++|+++||....
T Consensus 205 ~i~~~~~~~~G~~~~i~lP~~~~ 227 (244)
T 3d36_A 205 TIRIESEIHKGTTVSIYLPLASS 227 (244)
T ss_dssp EEEEEEETTTEEEEEEEEECCC-
T ss_pred EEEEEecCCCcEEEEEEecCCCC
Confidence 99999999999999999998643
No 10
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=99.94 E-value=4.7e-26 Score=228.81 Aligned_cols=214 Identities=13% Similarity=0.178 Sum_probs=163.0
Q ss_pred HHHHHHHHHHHHHhhchhHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhhHHHHHHHHHHhhccccccCCCCCC
Q psy14548 103 LDKFCKALVKIRNRHSDVVQTMAQGVMELKDSHDVDHQTENSIQYFLDRFYMSRISIRMLINQHTLLFGDELTRGDSSLR 182 (482)
Q Consensus 103 ~~~f~~~l~~~l~~~~~~i~~la~g~~e~~~~~~~~~~~~e~~~~~Ld~i~~sri~~r~Li~~~l~L~~~~~~~~~~~~~ 182 (482)
..+|...++|++++|++.|..+++.+.+. . .+++...++++.+..+...+..++++.+.+.+...
T Consensus 132 ~~~~~~~i~Helr~pL~~i~~~~~~l~~~---~----~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~-------- 196 (349)
T 3a0r_A 132 LGEMTARVAHEIRNPITIIGGFIMRMKKH---L----DDPETLKKYINIITNELSRLETIVKEILEYSKERQ-------- 196 (349)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTS---C----SCSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHCC---------
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhh---c----cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc--------
Confidence 35799999999999999997776644321 1 12344567778887766667778888888875211
Q ss_pred cccccCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEeeccCCCCCeEEEechhHHHHHHHHHHHHHHHHhhhcCCC
Q psy14548 183 HIGCIDPQCDLIGVVKDAYENARFLCEQYYLSSPELKVTEHNEYEKGEPVRIIYVPSHLYHMLFELFKNSMRATVEHHTD 262 (482)
Q Consensus 183 ~ig~i~~~~~l~~li~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~L~~il~NLl~NAik~t~~~~~~ 262 (482)
......+++.+++++++..+...+. ...+.+.+.. +..+..+.+|+..|.+|+.||+.||+||+.+++.
T Consensus 197 --~~~~~~~~l~~~~~~~~~~~~~~~~-----~~~i~~~~~~---~~~~~~~~~d~~~l~~vl~nLl~NA~k~~~~~~~- 265 (349)
T 3a0r_A 197 --VLEFTEFNLNELIREVYVLFEEKIR-----KMNIDFCFET---DNEDLRVEADRTRIKQVLINLVQNAIEATGENGK- 265 (349)
T ss_dssp --CEEEEEEEHHHHHHHHHHHHHHHHT-----TTTCCCEEEE---SCSCCEEEECHHHHHHHHHHHHTHHHHTTCTTCC-
T ss_pred --ccCCcccCHHHHHHHHHHHHHHHHH-----HcCcEEEEec---CCCCceEEeCHHHHHHHHHHHHHHHHHhccCCCE-
Confidence 1122356999999999988876543 2334444333 2335678999999999999999999999965543
Q ss_pred CCCCCCEEEEEEecCceeEEEEEEcCCCCChhhHhhhhhcccccCCCCCCCCCCCCCCCCcccCHHHHHHHHH-HhCCEE
Q psy14548 263 TDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVTDMLFHYMYSTAPQPSKSDAHTVPLAGYGYGLPISRLYAR-YFHGDI 341 (482)
Q Consensus 263 ~~~~p~I~v~~~~~~~~~~i~V~D~G~GI~~~~~~~if~~f~~t~~~~~~~~~~~~~~~G~GLGL~i~r~~~~-~~gG~i 341 (482)
|.|.+...++.+.|.|+|+|+|||++.++++|++||+++. .|+||||++|+.+++ .|||.+
T Consensus 266 ------i~i~~~~~~~~~~i~v~D~G~Gi~~~~~~~if~~f~~~~~------------~g~GlGL~i~~~~v~~~~gg~i 327 (349)
T 3a0r_A 266 ------IKITSEDMYTKVRVSVWNSGPPIPEELKEKIFSPFFTTKT------------QGTGLGLSICRKIIEDEHGGKI 327 (349)
T ss_dssp ------EEEEEEEETTEEEEEEEEESCCCCGGGGTTTSSSCCCC------------------CCCTHHHHHHHHTTCSBC
T ss_pred ------EEEEEEecCCEEEEEEEECCCCCChHHHhhcCCCCccCCC------------CCccchHHHHHHHHHHhCCCEE
Confidence 9999999999999999999999999999999999998642 599999999999999 899999
Q ss_pred EEEeecCCcEEEEEEeeCCC
Q psy14548 342 MLLSCDGLGTDAIIYLKALS 361 (482)
Q Consensus 342 ~v~s~~g~Gt~f~i~lp~~~ 361 (482)
.+.+.+ .||+|+++||...
T Consensus 328 ~~~~~~-~Gt~f~i~lP~~~ 346 (349)
T 3a0r_A 328 WTENRE-NGVVFIFEIPKTP 346 (349)
T ss_dssp CEEECS-SEEEEEEEEESCT
T ss_pred EEEeCC-CcEEEEEEecCCC
Confidence 999875 5999999999754
No 11
>4fpp_A Phosphotransferase; four helix bundle, bergerat fold, CCKA, CTRA, CPDR, bacterial cytoplasme; 2.20A {Caulobacter crescentus} PDB: 4fmt_A
Probab=99.92 E-value=2.5e-24 Score=207.50 Aligned_cols=197 Identities=11% Similarity=-0.004 Sum_probs=136.2
Q ss_pred HHHHHHHHHHhhchhHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhhHHHHHHHHHHhhccccccCCCCCCccc
Q psy14548 106 FCKALVKIRNRHSDVVQTMAQGVMELKDSHDVDHQTENSIQYFLDRFYMSRISIRMLINQHTLLFGDELTRGDSSLRHIG 185 (482)
Q Consensus 106 f~~~l~~~l~~~~~~i~~la~g~~e~~~~~~~~~~~~e~~~~~Ld~i~~sri~~r~Li~~~l~L~~~~~~~~~~~~~~ig 185 (482)
+...++|++++|++.|...++.+.+ ...++...++++.|.++...+..+++ .+.+.... ...
T Consensus 49 las~IaHELrtPL~~I~~~~elL~~--------~~~~~~~~~~l~~I~~~~~~~~~ll~-~~r~~~~~----~~~----- 110 (247)
T 4fpp_A 49 LAARLCHDFISPASAIVSGLDLLED--------PSAQDMRDDAMNLIASSARKLADLLQ-FTRVAFGA----SAS----- 110 (247)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC--------TTCGGGHHHHHHHHHHHHHHHHHHHH-HHHHHTTC----CSS-----
T ss_pred HHhccCHHHhHHHHHHHHHHHHHhc--------cCCchHHHHHHHHHHHHHHHHHHHHH-HHHHhhcc----ccc-----
Confidence 4566889999999999777664321 12345667778877755433333333 22221110 111
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEeeccCCCCCeEEEechhHHHHHHHHHHHHHHHHhhhcCCCCCC
Q psy14548 186 CIDPQCDLIGVVKDAYENARFLCEQYYLSSPELKVTEHNEYEKGEPVRIIYVPSHLYHMLFELFKNSMRATVEHHTDTDV 265 (482)
Q Consensus 186 ~i~~~~~l~~li~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~L~~il~NLl~NAik~t~~~~~~~~~ 265 (482)
...+++.++.. .++.++. ...+.+.+.. ++ ..++..+.|++.||+.||++|++.++.
T Consensus 111 --~~~~~~~~l~~----~~~~~~~-----~~~i~l~~~~--~~------~~~~~~~~qvl~NLl~NA~~a~~~gg~---- 167 (247)
T 4fpp_A 111 --AENFDSRELEK----LAQGVFA-----HVRPTLDWQI--EP------QAMNKPSSRAVLNIAQIAASALPAGGV---- 167 (247)
T ss_dssp --CCCEEHHHHHH----HHHHHHT-----TSSSEEEECC--CS------CEECHHHHHHHHHHHHHHHTTCTTCCE----
T ss_pred --cccccHHHHHH----HHHHHHH-----hhhhhccccc--cc------hhhhHHHHHHHHHHHHHHHHhcCCCCe----
Confidence 12335555433 2333221 2345555422 11 123678899999999999999988765
Q ss_pred CCCEEEEEEecCceeEEEEEEcCCC--CChhhHhhhhhcccccCCCCCCCCCCCCCCCCcccCHHHHHHHHHHhCCEEEE
Q psy14548 266 LPPIEVSVVRGKEDICVKMSDKGGG--IPRSVTDMLFHYMYSTAPQPSKSDAHTVPLAGYGYGLPISRLYARYFHGDIML 343 (482)
Q Consensus 266 ~p~I~v~~~~~~~~~~i~V~D~G~G--I~~~~~~~if~~f~~t~~~~~~~~~~~~~~~G~GLGL~i~r~~~~~~gG~i~v 343 (482)
|.|.+...++.+.|.|+|+|+| |+++..+++|++|++++ ..|+||||+|||.+++.|||+|++
T Consensus 168 ---I~v~~~~~~~~~~i~V~D~G~Gi~i~~~~~~~~f~~~~~~~------------~~G~GLGLai~~~iv~~hGG~i~v 232 (247)
T 4fpp_A 168 ---ATVKGVAADGRFSIIADAKGPRARLRPEVLAGLKGEPLAEG------------LGGPWVQAAYLNALVRAAGGQIAV 232 (247)
T ss_dssp ---EEEEEEEETTEEEEEEEEESTTCCCCHHHHHHHTTCCCCSS------------CHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred ---EEEEEEEECCEEEEEEEEcCCCCCCCHHHHHHhcCCCCCCC------------CCCccHHHHHHHHHHHHcCCEEEE
Confidence 9999999999999999999988 66778888888887643 269999999999999999999999
Q ss_pred EeecCCcEEEEEEeeC
Q psy14548 344 LSCDGLGTDAIIYLKA 359 (482)
Q Consensus 344 ~s~~g~Gt~f~i~lp~ 359 (482)
+|.+| |++|+++||.
T Consensus 233 ~s~~~-G~~f~v~LPA 247 (247)
T 4fpp_A 233 EIGED-RASIAAWVPA 247 (247)
T ss_dssp EEETT-EEEEEEEEEC
T ss_pred EEcCC-EEEEEEEecC
Confidence 99765 9999999994
No 12
>1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A
Probab=99.91 E-value=8e-24 Score=187.23 Aligned_cols=143 Identities=18% Similarity=0.295 Sum_probs=116.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEeeccCCCCCeEEEechhHHHHHHHHHHHHHHHHhhhcCCCCCCCCCE
Q psy14548 190 QCDLIGVVKDAYENARFLCEQYYLSSPELKVTEHNEYEKGEPVRIIYVPSHLYHMLFELFKNSMRATVEHHTDTDVLPPI 269 (482)
Q Consensus 190 ~~~l~~li~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~L~~il~NLl~NAik~t~~~~~~~~~~p~I 269 (482)
.+++.++++++++.+... .+.+.+.+.. +.+..+.+|+..|.+++.||+.||+||+..+ . |
T Consensus 7 ~~~l~~~~~~~~~~~~~~-------~~~~~i~~~~----~~~~~~~~d~~~l~~il~nLl~NA~~~~~~~-~-------I 67 (150)
T 1ysr_A 7 PVDITDLLDRAAHDAARI-------YPDLDVSLVP----SPTCIIVGLPAGLRLAVDNAIANAVKHGGAT-L-------V 67 (150)
T ss_dssp EEEHHHHHHHHHHHHHHH-------STTCEEEECS----CCCCEEEECHHHHHHHHHHHHHHHHHTTCCS-E-------E
T ss_pred ccCHHHHHHHHHHHHHHh-------ccCCceEEcc----CCCceEecCHHHHHHHHHHHHHHHHhcCCCc-E-------E
Confidence 459999999999877652 3456666543 3456799999999999999999999998655 2 9
Q ss_pred EEEEEecCceeEEEEEEcCCCCChhhHhhhhhcccccCCCCCCCCCCCCCCCCcccCHHHHHHHHHHhCCEEEEEeecCC
Q psy14548 270 EVSVVRGKEDICVKMSDKGGGIPRSVTDMLFHYMYSTAPQPSKSDAHTVPLAGYGYGLPISRLYARYFHGDIMLLSCDGL 349 (482)
Q Consensus 270 ~v~~~~~~~~~~i~V~D~G~GI~~~~~~~if~~f~~t~~~~~~~~~~~~~~~G~GLGL~i~r~~~~~~gG~i~v~s~~g~ 349 (482)
.|.+...++.+.|.|+|+|+||+++.++++|++||++.. ....|+||||++|+.+++.|||+|.+.+.++.
T Consensus 68 ~i~~~~~~~~~~i~v~D~G~gi~~~~~~~if~~f~~~~~---------~~~~g~GlGL~i~~~~~~~~gG~i~~~~~~~~ 138 (150)
T 1ysr_A 68 QLSAVSSRAGVEIAIDDNGSGVPEGERQVVFERFSRGST---------ASHSGSGLGLALVAQQAQLHGGTASLENSPLG 138 (150)
T ss_dssp EEEEEEETTEEEEEEEESSSCCCGGGHHHHHTSCC--------------------CCCHHHHHHHHHTTCEEEEEECTTS
T ss_pred EEEEEecCCEEEEEEEECCCCCCHHHHHHHhcccccCCC---------CCCCCCCcCHHHHHHHHHHcCCEEEEeecCCC
Confidence 999998899999999999999999999999999998532 12368999999999999999999999999999
Q ss_pred cEEEEEEeeCC
Q psy14548 350 GTDAIIYLKAL 360 (482)
Q Consensus 350 Gt~f~i~lp~~ 360 (482)
|++|++.||..
T Consensus 139 G~~~~i~lP~~ 149 (150)
T 1ysr_A 139 GARLVLRLPGP 149 (150)
T ss_dssp SEEEEEEEECC
T ss_pred CEEEEEEEeCC
Confidence 99999999964
No 13
>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A
Probab=99.91 E-value=3.6e-23 Score=183.10 Aligned_cols=145 Identities=14% Similarity=0.225 Sum_probs=122.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEeeccCCCCCeEEEechhHHHHHHHHHHHHHHHHhhhcCCCCCCCCCE
Q psy14548 190 QCDLIGVVKDAYENARFLCEQYYLSSPELKVTEHNEYEKGEPVRIIYVPSHLYHMLFELFKNSMRATVEHHTDTDVLPPI 269 (482)
Q Consensus 190 ~~~l~~li~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~L~~il~NLl~NAik~t~~~~~~~~~~p~I 269 (482)
.+++.++++++++.+...+. ...+.+.+.. +.+..+.+|+..|.+++.||+.||++|+.. . |
T Consensus 3 ~~~l~~~l~~~~~~~~~~~~-----~~~i~~~~~~----~~~~~~~~d~~~l~~il~nLl~NAi~~~~~-~--------i 64 (152)
T 1id0_A 3 LHPVAPLLDNLTSALNKVYQ-----RKGVNISLDI----SPEISFVGEQNDFVEVMGNVLDNACKYCLE-F--------V 64 (152)
T ss_dssp EEEHHHHHHHHHHHHHHHTT-----TTTCEEEEEC----CTTCEEESCHHHHHHHHHHHHHHHHHHCSS-E--------E
T ss_pred cccHHHHHHHHHHHHHHHHH-----hCCcEEEEEc----CCCceEeeCHHHHHHHHHHHHHHHHHhCcC-e--------E
Confidence 45899999999998877532 2345555433 223568999999999999999999999854 2 9
Q ss_pred EEEEEecCceeEEEEEEcCCCCChhhHhhhhhcccccCCCCCCCCCCCCCCCCcccCHHHHHHHHHHhCCEEEEEeecCC
Q psy14548 270 EVSVVRGKEDICVKMSDKGGGIPRSVTDMLFHYMYSTAPQPSKSDAHTVPLAGYGYGLPISRLYARYFHGDIMLLSCDGL 349 (482)
Q Consensus 270 ~v~~~~~~~~~~i~V~D~G~GI~~~~~~~if~~f~~t~~~~~~~~~~~~~~~G~GLGL~i~r~~~~~~gG~i~v~s~~g~ 349 (482)
.|.+...++.+.|.|+|+|.||+++.++++|++|+++.. ...|+||||++|+.+++.|||++.+.+.++.
T Consensus 65 ~i~~~~~~~~~~i~i~D~G~gi~~~~~~~~f~~~~~~~~----------~~~g~GlGL~i~~~~~~~~gG~i~~~~~~~~ 134 (152)
T 1id0_A 65 EISARQTDEHLYIVVEDDGPGIPLSKREVIFDRGQRVDT----------LRPGQGVGLAVAREITEQYEGKIVAGESMLG 134 (152)
T ss_dssp EEEEEECSSCEEEEEEESSSCCCGGGTTGGGSCCCCTTC----------CCTTCCSCHHHHHHHHHHTTCEEEEEECTTS
T ss_pred EEEEEecCCEEEEEEEeCCCCcCHHHHHHHhccceeccC----------CCCCcccCHHHHHHHHHHcCCEEEEEeCCCC
Confidence 999999999999999999999999999999999998542 2269999999999999999999999999999
Q ss_pred cEEEEEEeeCCCC
Q psy14548 350 GTDAIIYLKALSN 362 (482)
Q Consensus 350 Gt~f~i~lp~~~~ 362 (482)
||+|+++||....
T Consensus 135 G~~~~i~lP~~~~ 147 (152)
T 1id0_A 135 GARMEVIFGRQHS 147 (152)
T ss_dssp SEEEEEEECCCC-
T ss_pred cEEEEEEEecccc
Confidence 9999999998643
No 14
>1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3
Probab=99.90 E-value=3e-23 Score=185.83 Aligned_cols=144 Identities=17% Similarity=0.201 Sum_probs=120.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEeeccCCCCCeEEEechhHHHHHHHHHHHHHHHHhhhcCCCCCCCCCE
Q psy14548 190 QCDLIGVVKDAYENARFLCEQYYLSSPELKVTEHNEYEKGEPVRIIYVPSHLYHMLFELFKNSMRATVEHHTDTDVLPPI 269 (482)
Q Consensus 190 ~~~l~~li~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~L~~il~NLl~NAik~t~~~~~~~~~~p~I 269 (482)
.+++.++++++++.+. .....+.+.. ...+..+.+|+..|.+++.||++||+||+ ++. |
T Consensus 9 ~~~l~~~~~~~~~~~~---------~~~~~i~~~~---~~~~~~v~~d~~~l~~il~nll~NAik~~--~~~-------I 67 (161)
T 1bxd_A 9 MADLNAVLGEVIAAES---------GYEREIETAL---YPGSIEVKMHPLSIKRAVANMVVNAARYG--NGW-------I 67 (161)
T ss_dssp EECHHHHHHHHHHHHC---------SSSCCEEEEC---CSSCCCEEECHHHHHHHHHHHHHHHHTTC--CSC-------E
T ss_pred ccCHHHHHHHHHHHhh---------hhcceEEEEe---cCCCceEEECHHHHHHHHHHHHHHHHhhc--CCe-------E
Confidence 4599999999887643 2334454443 23456789999999999999999999998 332 9
Q ss_pred EEEEEecCceeEEEEEEcCCCCChhhHhhhhhcccccCCCCCCCCCCCCCCCCcccCHHHHHHHHHHhCCEEEEEeecCC
Q psy14548 270 EVSVVRGKEDICVKMSDKGGGIPRSVTDMLFHYMYSTAPQPSKSDAHTVPLAGYGYGLPISRLYARYFHGDIMLLSCDGL 349 (482)
Q Consensus 270 ~v~~~~~~~~~~i~V~D~G~GI~~~~~~~if~~f~~t~~~~~~~~~~~~~~~G~GLGL~i~r~~~~~~gG~i~v~s~~g~ 349 (482)
.|.+...++.+.|.|+|+|.||+++.++++|++||++... ....|+||||++|+.+++.|||+|.+.+.++.
T Consensus 68 ~i~~~~~~~~~~i~i~D~G~gi~~~~~~~~f~~f~~~~~~--------~~~~g~GlGL~i~~~~~~~~gG~i~~~~~~~~ 139 (161)
T 1bxd_A 68 KVSSGTEPNRAWFQVEDDGPGIAPEQRKHLFQPFVRGDSA--------RTISGTGLGLAIVQRIVDNHNGMLELGTSERG 139 (161)
T ss_dssp EEEEEEETTEEEEEEEEESSCSCTTGGGCSSCCCCCCSCC--------CCCCCCSCCCCTTHHHHHHHTSEEEEEEETTT
T ss_pred EEEEEEcCCEEEEEEEeCCCCCCHHHHHHhCCCceeCCCC--------CCCCCcccCHHHHHHHHHHcCCEEEEEECCCC
Confidence 9999988999999999999999999999999999996531 22369999999999999999999999999999
Q ss_pred cEEEEEEeeCCCC
Q psy14548 350 GTDAIIYLKALSN 362 (482)
Q Consensus 350 Gt~f~i~lp~~~~ 362 (482)
|++|++.||....
T Consensus 140 G~~~~i~lP~~~~ 152 (161)
T 1bxd_A 140 GLSIRAWLPVPVT 152 (161)
T ss_dssp EEEEEEEECCCSC
T ss_pred eEEEEEEEeCCcc
Confidence 9999999998643
No 15
>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A
Probab=99.90 E-value=1.9e-22 Score=178.19 Aligned_cols=144 Identities=19% Similarity=0.273 Sum_probs=121.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEeeccCCCCCeEEEechhHHHHHHHHHHHHHHHHhhhcCCCCCCCCCE
Q psy14548 190 QCDLIGVVKDAYENARFLCEQYYLSSPELKVTEHNEYEKGEPVRIIYVPSHLYHMLFELFKNSMRATVEHHTDTDVLPPI 269 (482)
Q Consensus 190 ~~~l~~li~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~L~~il~NLl~NAik~t~~~~~~~~~~p~I 269 (482)
.+++.+++++++..+...+.. ..+.+.+.. +..+..+.+|+..|.+++.||+.||++|+.+++. |
T Consensus 5 ~~~l~~~~~~~~~~~~~~~~~-----~~i~~~~~~---~~~~~~i~~d~~~l~~il~nll~NAi~~~~~~~~-------I 69 (152)
T 3a0y_A 5 EFNLNELIREVYVLFEEKIRK-----MNIDFCFET---DNEDLRVEADRTRIKQVLINLVQNAIEATGENGK-------I 69 (152)
T ss_dssp EEEHHHHHHHHHHHHHHHHHH-----TTCEEEEEE---SCSSCEEEECHHHHHHHHHHHHHHHHHHHCTTCE-------E
T ss_pred EecHHHHHHHHHHHHHHHHHH-----cCcEEEEec---CCCCcEEEECHHHHHHHHHHHHHHHHHhcCCCCE-------E
Confidence 458999999999988876553 345555443 2335679999999999999999999999965543 9
Q ss_pred EEEEEecCceeEEEEEEcCCCCChhhHhhhhhcccccCCCCCCCCCCCCCCCCcccCHHHHHHHHH-HhCCEEEEEeecC
Q psy14548 270 EVSVVRGKEDICVKMSDKGGGIPRSVTDMLFHYMYSTAPQPSKSDAHTVPLAGYGYGLPISRLYAR-YFHGDIMLLSCDG 348 (482)
Q Consensus 270 ~v~~~~~~~~~~i~V~D~G~GI~~~~~~~if~~f~~t~~~~~~~~~~~~~~~G~GLGL~i~r~~~~-~~gG~i~v~s~~g 348 (482)
.|.+...++.+.|.|+|+|.||+++.++++|++|++++. .|+|+||++|+.+++ .|||.+.+.+.+
T Consensus 70 ~i~~~~~~~~~~i~i~D~G~g~~~~~~~~~f~~~~~~~~------------~g~GlGL~i~~~~~~~~~gg~~~~~~~~- 136 (152)
T 3a0y_A 70 KITSEDMYTKVRVSVWNSGPPIPEELKEKIFSPFFTTKT------------QGTGLGLSICRKIIEDEHGGKIWTENRE- 136 (152)
T ss_dssp EEEEEECSSEEEEEEEEESCCCCGGGTTGGGSTTCCCC--------------CCCCSHHHHHHHHHTTTSCEEEEEEET-
T ss_pred EEEEEecCCEEEEEEEeCCCCcCHHHHHhHhhhhccCCC------------CCCCcCHHHHHHHHHHhCCcEEEEecCC-
Confidence 999998899999999999999999999999999998532 589999999999999 999999998875
Q ss_pred CcEEEEEEeeCCC
Q psy14548 349 LGTDAIIYLKALS 361 (482)
Q Consensus 349 ~Gt~f~i~lp~~~ 361 (482)
.|++|++.||...
T Consensus 137 ~g~~~~i~lP~~~ 149 (152)
T 3a0y_A 137 NGVVFIFEIPKTP 149 (152)
T ss_dssp TEEEEEEEEESCC
T ss_pred CCEEEEEEeCCCC
Confidence 5999999999753
No 16
>3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis}
Probab=99.88 E-value=3.1e-22 Score=182.27 Aligned_cols=150 Identities=19% Similarity=0.293 Sum_probs=118.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEeeccCCCCCeEEEechhHHHHHHHHHHHHHHHHhhhcCCCCCCCCCEE
Q psy14548 191 CDLIGVVKDAYENARFLCEQYYLSSPELKVTEHNEYEKGEPVRIIYVPSHLYHMLFELFKNSMRATVEHHTDTDVLPPIE 270 (482)
Q Consensus 191 ~~l~~li~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~L~~il~NLl~NAik~t~~~~~~~~~~p~I~ 270 (482)
+++.++++++++.+... ....+.+.+.. + .....+.+|+..|.+|+.||+.||++|+..++. |.
T Consensus 3 v~l~~~l~~~~~~~~~~------~~~~i~~~~~~--~-~~~~~~~~d~~~l~~il~nLl~NAi~~~~~~~~-------i~ 66 (177)
T 3sl2_A 3 IQIVRFMSLIIDRFEMT------KEQHVEFIRNL--P-DRDLYVEIDQDKITQVLDNIISNALKYSPEGGH-------VT 66 (177)
T ss_dssp EEHHHHHHHHHHHHHTS------SCC--CEEEEC--C-SSCCEEESCHHHHHHHHHHHHHHHHHTCCTTCC-------EE
T ss_pred eeHHHHHHHHHHHHHHH------HhcCcEEEEec--C-CCCcEEEeCHHHHHHHHHHHHHHHHHhCCCCCe-------EE
Confidence 47888888888877652 12334444433 2 335778999999999999999999999966543 66
Q ss_pred EEE--EecCceeEEEEEEcCCCCChhhHhhhhhcccccCCCCCCCCCCCCCCCCcccCHHHHHHHHHHhCCEEEEEeecC
Q psy14548 271 VSV--VRGKEDICVKMSDKGGGIPRSVTDMLFHYMYSTAPQPSKSDAHTVPLAGYGYGLPISRLYARYFHGDIMLLSCDG 348 (482)
Q Consensus 271 v~~--~~~~~~~~i~V~D~G~GI~~~~~~~if~~f~~t~~~~~~~~~~~~~~~G~GLGL~i~r~~~~~~gG~i~v~s~~g 348 (482)
|.+ ...++.+.|.|+|+|.||+++.++++|++||++.. .......|.||||++|+.+++.|||+|.+.+.++
T Consensus 67 I~i~~~~~~~~~~i~V~D~G~gi~~~~~~~lf~~~~~~~~------~~~~~~~g~GlGL~iv~~~~~~~~G~i~i~~~~~ 140 (177)
T 3sl2_A 67 FSIDVNEEEELLYISVKDEGIGIPKKDVEKVFDRFYRVDK------ARTRKLGGTGLGLAIAKEMVQAHGGDIWADSIEG 140 (177)
T ss_dssp EEEEEETTTTEEEEEEECCSSCCCTTTTTTTTSTTCCCC------------CCCCCCHHHHHHHHHHHTTCCEEEEEETT
T ss_pred EEEEEccCCCEEEEEEEECCCCCCHHHHHHHHhhhccCCC------CCCCCCCCCCcCHHHHHHHHHHcCCEEEEEecCC
Confidence 666 66778899999999999999999999999998542 1233446999999999999999999999999999
Q ss_pred CcEEEEEEeeCCCC
Q psy14548 349 LGTDAIIYLKALSN 362 (482)
Q Consensus 349 ~Gt~f~i~lp~~~~ 362 (482)
.||+|++.||....
T Consensus 141 ~Gt~~~i~lP~~~~ 154 (177)
T 3sl2_A 141 KGTTITFTLPYKEE 154 (177)
T ss_dssp TEEEEEEEEEEEC-
T ss_pred CCeEEEEEEeCCCC
Confidence 99999999997643
No 17
>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transfera; 1.60A {Escherichia coli} SCOP: d.122.1.3
Probab=99.87 E-value=6.6e-22 Score=176.03 Aligned_cols=141 Identities=21% Similarity=0.294 Sum_probs=98.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEeeccCCCCCeEEEechhHHHHHHHHHHHHHHHHhhh-cCCCCCCCCC
Q psy14548 190 QCDLIGVVKDAYENARFLCEQYYLSSPELKVTEHNEYEKGEPVRIIYVPSHLYHMLFELFKNSMRATVE-HHTDTDVLPP 268 (482)
Q Consensus 190 ~~~l~~li~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~L~~il~NLl~NAik~t~~-~~~~~~~~p~ 268 (482)
.+++.++++++++.+... ....+.+.+.. ++. ...+.+|+..|.+++.||++||+||+.. ++.
T Consensus 7 ~~~l~~~~~~~~~~~~~~------~~~~i~~~~~~--~~~-~~~i~~d~~~l~~il~nLl~NAik~~~~~~~~------- 70 (160)
T 1r62_A 7 TESIHKVAERVVTLVSME------LPDNVRLIRDY--DPS-LPELAHDPDQIEQVLLNIVRNALQALGPEGGE------- 70 (160)
T ss_dssp EECHHHHHHHHHHHHTTT------CCTTEEEEEEC--CTT-CCCEEECHHHHHHHHHHHHHHHHHHHGGGCEE-------
T ss_pred cCCHHHHHHHHHHHHHhh------cccCcEEEEEc--CCC-CCeeeeCHHHHHHHHHHHHHHHHHHhhccCCe-------
Confidence 459999999988877641 12334444433 332 2358999999999999999999999976 443
Q ss_pred EEEEEEecCc----------eeEEEEEEcCCCCChhhHhhhhhcccccCCCCCCCCCCCCCCCCcccCHHHHHHHHHHhC
Q psy14548 269 IEVSVVRGKE----------DICVKMSDKGGGIPRSVTDMLFHYMYSTAPQPSKSDAHTVPLAGYGYGLPISRLYARYFH 338 (482)
Q Consensus 269 I~v~~~~~~~----------~~~i~V~D~G~GI~~~~~~~if~~f~~t~~~~~~~~~~~~~~~G~GLGL~i~r~~~~~~g 338 (482)
|.|.+...++ .+.|.|+|+|.||+++.++++|++|++++. .|+||||++|+.+++.||
T Consensus 71 I~i~~~~~~~~~~~~~~~~~~~~i~v~D~G~gi~~~~~~~lf~~~~~~~~------------~g~GlGL~i~~~~~~~~g 138 (160)
T 1r62_A 71 IILRTRTAFQLTLHGERYRLAARIDVEDNGPGIPPHLQDTLFYPMVSGRE------------GGTGLGLSIARNLIDQHS 138 (160)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEEEECTTC--------------------------------CHHHHHHHHHHHHTT
T ss_pred EEEEEeccccccccccccccEEEEEEEeCCCCCCHHHHHHhhCccccCCC------------CCCccCHHHHHHHHHHCC
Confidence 8888877666 899999999999999999999999998542 589999999999999999
Q ss_pred CEEEEEeecCCcEEEEEEeeC
Q psy14548 339 GDIMLLSCDGLGTDAIIYLKA 359 (482)
Q Consensus 339 G~i~v~s~~g~Gt~f~i~lp~ 359 (482)
|++.+.+.+++ |+|++.||.
T Consensus 139 G~l~i~s~~~~-~~~~i~lP~ 158 (160)
T 1r62_A 139 GKIEFTSWPGH-TEFSVYLPI 158 (160)
T ss_dssp CEEEEEEETTE-EEEEEEEEE
T ss_pred CeEEEEeCCCC-EEEEEEEec
Confidence 99999998876 999999995
No 18
>1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi-domai protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* 3ur1_A
Probab=99.87 E-value=1.3e-21 Score=200.24 Aligned_cols=209 Identities=15% Similarity=0.154 Sum_probs=138.6
Q ss_pred hHHHHHHHHHHHHHhhchhHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhhHHHHHHHHHHhhccccccCCCCC
Q psy14548 102 TLDKFCKALVKIRNRHSDVVQTMAQGVMELKDSHDVDHQTENSIQYFLDRFYMSRISIRMLINQHTLLFGDELTRGDSSL 181 (482)
Q Consensus 102 ~~~~f~~~l~~~l~~~~~~i~~la~g~~e~~~~~~~~~~~~e~~~~~Ld~i~~sri~~r~Li~~~l~L~~~~~~~~~~~~ 181 (482)
+..+|...++|+++++.+.+..+++ .. ..+.+.+-+++ +..++++++.+....
T Consensus 9 ~k~d~l~~~~~el~~~~~~l~~~~~-------~~-----~~~~i~~~~~~-------l~~l~~~l~~~~~~~-------- 61 (379)
T 1b3q_A 9 EKLDNLMDLMGELVIARSRILETLK-------KY-----NIKELDESLSH-------LSRITLDLQNVVMKI-------- 61 (379)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTS-------SC-----CCHHHHHHHHH-------HHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------hh-----hHHHHHHHHHH-------HHHHHHHHHHHHHHc--------
Confidence 4567888999999999887654432 11 12333333333 333444444443211
Q ss_pred CcccccCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEeeccCCCCCeEEEechhH---HHHHHHHHHHHHHHHhhh
Q psy14548 182 RHIGCIDPQCDLIGVVKDAYENARFLCEQYYLSSPELKVTEHNEYEKGEPVRIIYVPSH---LYHMLFELFKNSMRATVE 258 (482)
Q Consensus 182 ~~ig~i~~~~~l~~li~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~---L~~il~NLl~NAik~t~~ 258 (482)
+ .+++..+++.+...++.++..+ ...+.+.+. ... +..|+.. +.+++.||++||++|+.+
T Consensus 62 ~-------~~~~~~~~~~~~~~~~~~~~~~---~~~v~l~~~-----~~~--~~~d~~~~~~l~~~l~nLl~NAi~h~~e 124 (379)
T 1b3q_A 62 R-------MVPISFVFNRFPRMVRDLAKKM---NKEVNFIMR-----GED--TELDRTFVEEIGEPLLHLLRNAIDHGIE 124 (379)
T ss_dssp H-------EEETHHHHTTHHHHHHHHHHHT---TCCEEEEEE-----CTT--CEEEHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred c-------eecHHHHHHHHHHHHHHHHHHh---CCeEEEEEc-----CCC--eeecHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 1 1266778888888888776642 233344332 112 3467755 455599999999999832
Q ss_pred cCC-----CCCCCCCEEEEEEecCceeEEEEEEcCCCCChhhH------------------------hhhhhcccccCCC
Q psy14548 259 HHT-----DTDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVT------------------------DMLFHYMYSTAPQ 309 (482)
Q Consensus 259 ~~~-----~~~~~p~I~v~~~~~~~~~~i~V~D~G~GI~~~~~------------------------~~if~~f~~t~~~ 309 (482)
... .....+.|.|.+...++.+.|+|+|+|.||+++.+ ++||+|||+++..
T Consensus 125 ~~~~r~~~gk~~~g~I~i~~~~~~~~v~i~V~D~G~Gi~~~~~~~~a~~~gl~~~~~~~~~~~~~~~~~iF~p~fst~~~ 204 (379)
T 1b3q_A 125 PKEERIAKGKPPIGTLILSARHEGNNVVIEVEDDGRGIDKEKIIRKAIEKGLIDESKAATLSDQEILNFLFVPGFSTKEK 204 (379)
T ss_dssp CHHHHHHTTCCSSEEEEEEEEEETTEEEEEEEECSCCCCHHHHHHHHHHSSSCCSTTTTTSCTHHHHSGGGSTTCC----
T ss_pred CHHHHHhcCCCCCcEEEEEEEEeCCEEEEEEEECCCCCCHHHHHHHHHHcCCCChhhhhcCCHHHHHHHhcCCCCccCCc
Confidence 100 00112239999998999999999999999999987 8899999997642
Q ss_pred CCCCCCCCCCCCCcccCHHHHHHHHHHhCCEEEEEeecCCcEEEEEEeeCCC
Q psy14548 310 PSKSDAHTVPLAGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLKALS 361 (482)
Q Consensus 310 ~~~~~~~~~~~~G~GLGL~i~r~~~~~~gG~i~v~s~~g~Gt~f~i~lp~~~ 361 (482)
....+|+|+||++||.+++.|||+|.+.|.+|+||+|+++||...
T Consensus 205 -------~~~~~G~GlGL~iv~~~v~~~gG~i~v~s~~g~Gt~f~i~lPl~~ 249 (379)
T 1b3q_A 205 -------VSEVSGRGVGMDVVKNVVESLNGSMGIESEKDKGTKVTIRLPLTL 249 (379)
T ss_dssp --------------CCCSHHHHHHHHHTTCEEEEEEETTTEEEEEEEEESSC
T ss_pred -------cCCCCCccccHHHHHHHHHHCCCEEEEEEcCCCCeEEEeccCCcc
Confidence 233479999999999999999999999999999999999999753
No 19
>1i58_A Chemotaxis protein CHEA; beta-alpha sandwich, signaling protein, transferase; HET: ACP ADP; 1.60A {Thermotoga maritima} SCOP: d.122.1.3 PDB: 1i59_A* 1i5a_A* 1i5b_A* 1i5c_A* 1i5d_A*
Probab=99.86 E-value=1.5e-21 Score=179.57 Aligned_cols=156 Identities=17% Similarity=0.213 Sum_probs=115.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEeeccCCCCCeEEEechhHHHHHHHHHHHHHHHHhhhcCC-----CCC
Q psy14548 190 QCDLIGVVKDAYENARFLCEQYYLSSPELKVTEHNEYEKGEPVRIIYVPSHLYHMLFELFKNSMRATVEHHT-----DTD 264 (482)
Q Consensus 190 ~~~l~~li~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~L~~il~NLl~NAik~t~~~~~-----~~~ 264 (482)
.+++.++++++.+.++..+... .+.+.+... .........+...+.+++.||+.||+||+.+... ...
T Consensus 4 ~~~l~~~~~~~~~~~~~~~~~~-----~~~i~~~~~--~~~~~~~~~~~~~l~~il~nLl~NAik~~~~~~~~~~~~~~~ 76 (189)
T 1i58_A 4 MVPISFVFNRFPRMVRDLAKKM-----NKEVNFIMR--GEDTELDRTFVEEIGEPLLHLLRNAIDHGIEPKEERIAKGKP 76 (189)
T ss_dssp EEETHHHHTTHHHHHHHHHHHT-----TCCEEEEEE--CTTCEEEHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHTSC
T ss_pred EecHHHHHHHHHHHHHHHHHHh-----CCcEEEEEc--CCcccccHHHHHHHHHHHHHHHHHHHHhhhccccccccccCC
Confidence 4588999999999998877642 333433332 1211212233455666699999999999722100 000
Q ss_pred CCCCEEEEEEecCceeEEEEEEcCCCCChhhH------------------------hhhhhcccccCCCCCCCCCCCCCC
Q psy14548 265 VLPPIEVSVVRGKEDICVKMSDKGGGIPRSVT------------------------DMLFHYMYSTAPQPSKSDAHTVPL 320 (482)
Q Consensus 265 ~~p~I~v~~~~~~~~~~i~V~D~G~GI~~~~~------------------------~~if~~f~~t~~~~~~~~~~~~~~ 320 (482)
..+.|.|.+...++.+.|.|+|+|+||+++.+ +++|++||+++.. ....
T Consensus 77 ~~~~I~I~~~~~~~~~~i~V~D~G~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~if~~~~~~~~~-------~~~~ 149 (189)
T 1i58_A 77 PIGTLILSARHEGNNVVIEVEDDGRGIDKEKIIRKAIEKGLIDESKAATLSDQEILNFLFVPGFSTKEK-------VSEV 149 (189)
T ss_dssp SSEEEEEEEEEETTEEEEEEEECSSCCCHHHHHHHHHHTTSSCHHHHTTCCHHHHHGGGGSTTCSHHHH-------HHGG
T ss_pred CCCeEEEEEEecCCEEEEEEEeCCCCcCHHHHhhhhhhccchhhhhhcccchhhhHHHhcCCccccccc-------CCCC
Confidence 11239999998899999999999999999986 8999999986421 1122
Q ss_pred CCcccCHHHHHHHHHHhCCEEEEEeecCCcEEEEEEeeC
Q psy14548 321 AGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLKA 359 (482)
Q Consensus 321 ~G~GLGL~i~r~~~~~~gG~i~v~s~~g~Gt~f~i~lp~ 359 (482)
.|+||||++|+.+++.|||+|.+.|.++.||+|+++||.
T Consensus 150 ~g~GlGL~iv~~~~~~~~G~i~i~s~~~~Gt~~~i~lPl 188 (189)
T 1i58_A 150 SGRGVGMDVVKNVVESLNGSISIESEKDKGTKVTIRLPL 188 (189)
T ss_dssp GTCCCHHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEEC
T ss_pred CCCccCHHHHHHHHHHcCCEEEEEeCCCCceEEEEEEeC
Confidence 589999999999999999999999999999999999995
No 20
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A*
Probab=99.84 E-value=1.7e-19 Score=169.21 Aligned_cols=189 Identities=12% Similarity=0.055 Sum_probs=126.6
Q ss_pred HHHHHHHHHHHHHhhchhHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhhHHHHHHHHHHhhccccccCCCCCC
Q psy14548 103 LDKFCKALVKIRNRHSDVVQTMAQGVMELKDSHDVDHQTENSIQYFLDRFYMSRISIRMLINQHTLLFGDELTRGDSSLR 182 (482)
Q Consensus 103 ~~~f~~~l~~~l~~~~~~i~~la~g~~e~~~~~~~~~~~~e~~~~~Ld~i~~sri~~r~Li~~~l~L~~~~~~~~~~~~~ 182 (482)
..++...+.|.+.++++.+...++.+..... .+++...+.++.+..........+.+.+...
T Consensus 28 r~~la~~l~~~l~~~L~~i~~~~~~~~~~~~------~~~~~~~~~l~~i~~~~~~~~~~~r~~~~~~------------ 89 (218)
T 3ehh_A 28 RQRMARDLVDTLGQKLSLMGLKSDLARKLIY------KDPEQAARELKSVQQTARTSLNEVRKIVSSM------------ 89 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT------TCHHHHHHHHHHHHHHHHHHHHHHHHHHTTT------------
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHhhc------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------------
Confidence 4567788888888888888777776555432 1345566666666532111111122222111
Q ss_pred cccccCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEeeccCCCCCeEEEechhHHHHHHHHHHHHHHHHhhhcCCC
Q psy14548 183 HIGCIDPQCDLIGVVKDAYENARFLCEQYYLSSPELKVTEHNEYEKGEPVRIIYVPSHLYHMLFELFKNSMRATVEHHTD 262 (482)
Q Consensus 183 ~ig~i~~~~~l~~li~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~L~~il~NLl~NAik~t~~~~~~ 262 (482)
...++.+.+..+...++. ..+.+.+... ...+.....++..|.+|+.||+.||+||+..+.
T Consensus 90 ------~~~~l~~~l~~~~~~~~~---------~~~~~~~~~~--~~~~~~~~~~~~~l~~il~nll~Na~k~~~~~~-- 150 (218)
T 3ehh_A 90 ------KGIRLKDELINIKQILEA---------ADIMFIYEEE--KWPENISLLNENILSMCLKEAVTNVVKHSQAKT-- 150 (218)
T ss_dssp ------CCCCHHHHHHHHHHHHHH---------TTCEEECCCC--CCCSCCCHHHHHHHHHHHHHHHHHHHHHTCCSE--
T ss_pred ------CCcCHHHHHHHHHHHHHh---------cCCEEEEeCC--CCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCE--
Confidence 123677777776665542 2444544332 222222356778899999999999999985432
Q ss_pred CCCCCCEEEEEEecCceeEEEEEEcCCCCChhhHhhhhhcccccCCCCCCCCCCCCCCCCcccCHHHHHHHHHHhCCEEE
Q psy14548 263 TDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVTDMLFHYMYSTAPQPSKSDAHTVPLAGYGYGLPISRLYARYFHGDIM 342 (482)
Q Consensus 263 ~~~~p~I~v~~~~~~~~~~i~V~D~G~GI~~~~~~~if~~f~~t~~~~~~~~~~~~~~~G~GLGL~i~r~~~~~~gG~i~ 342 (482)
|.|.+...++.+.|.|+|+|+|||++.. .|+|+||++|+.+++.|||+|.
T Consensus 151 ------i~i~~~~~~~~~~i~V~D~G~Gi~~~~~------------------------~g~GlGL~~~~~~v~~~gG~i~ 200 (218)
T 3ehh_A 151 ------CRVDIQQLWKEVVITVSDDGTFKGEENS------------------------FSKGHGLLGMRERLEFANGSLH 200 (218)
T ss_dssp ------EEEEEEEETTEEEEEEEESSCCCC--------------------------------CHHHHHHHHHHHTTCEEE
T ss_pred ------EEEEEEEeCCEEEEEEEECCcCCCCCCC------------------------CCCCCCHHHHHHHHHHcCCEEE
Confidence 9999999999999999999999999754 3899999999999999999999
Q ss_pred EEeecCCcEEEEEEeeCC
Q psy14548 343 LLSCDGLGTDAIIYLKAL 360 (482)
Q Consensus 343 v~s~~g~Gt~f~i~lp~~ 360 (482)
+.|.+ ||+|+++||..
T Consensus 201 ~~s~~--Gt~~~i~lP~~ 216 (218)
T 3ehh_A 201 IDTEN--GTKLTMAIPNN 216 (218)
T ss_dssp EECSS--SEEEEEEEEC-
T ss_pred EeCCC--CeEEEEEEecC
Confidence 99977 99999999974
No 21
>3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase; HET: ATP; 1.74A {Bacillus subtilis}
Probab=99.77 E-value=2.8e-18 Score=147.75 Aligned_cols=125 Identities=14% Similarity=0.096 Sum_probs=97.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEeeccCCCCCeEEEechhHHHHHHHHHHHHHHHHhhhcCCCCCCCCCEE
Q psy14548 191 CDLIGVVKDAYENARFLCEQYYLSSPELKVTEHNEYEKGEPVRIIYVPSHLYHMLFELFKNSMRATVEHHTDTDVLPPIE 270 (482)
Q Consensus 191 ~~l~~li~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~L~~il~NLl~NAik~t~~~~~~~~~~p~I~ 270 (482)
+++.+.+..+...++. ..+.+.+... .........++..|.+++.||+.||+||+..+. |.
T Consensus 2 v~l~~~l~~~~~~~~~---------~~i~~~~~~~--~~~~~~~~~~~~~l~~il~nll~Na~k~~~~~~--------i~ 62 (128)
T 3ehg_A 2 IRLKDELINIKQILEA---------ADIMFIYEEE--KWPENISLLNENILSMCLKEAVTNVVKHSQAKT--------CR 62 (128)
T ss_dssp CCHHHHHHHHHHHHHH---------TTCEEECCCC--SCCSCCCHHHHHHHHHHHHHHHHHHHHHTCCSE--------EE
T ss_pred ccHHHHHHHHHHHHHH---------cCCEEEEEcC--ccccccCHHHHHHHHHHHHHHHHHHHhcCCCcE--------EE
Confidence 3667777766665553 2445544332 222222345788899999999999999984432 99
Q ss_pred EEEEecCceeEEEEEEcCCCCChhhHhhhhhcccccCCCCCCCCCCCCCCCCcccCHHHHHHHHHHhCCEEEEEeecCCc
Q psy14548 271 VSVVRGKEDICVKMSDKGGGIPRSVTDMLFHYMYSTAPQPSKSDAHTVPLAGYGYGLPISRLYARYFHGDIMLLSCDGLG 350 (482)
Q Consensus 271 v~~~~~~~~~~i~V~D~G~GI~~~~~~~if~~f~~t~~~~~~~~~~~~~~~G~GLGL~i~r~~~~~~gG~i~v~s~~g~G 350 (482)
|.+...++.+.|.|+|+|+||+++.. .|+|+||++++.+++.|||++.+.|.+ |
T Consensus 63 i~~~~~~~~~~i~V~D~G~Gi~~~~~------------------------~g~GlGL~~~~~~~~~~gG~i~~~s~~--G 116 (128)
T 3ehg_A 63 VDIQQLWKEVVITVSDDGTFKGEENS------------------------FSKGHGLLGMRERLEFANGSLHIDTEN--G 116 (128)
T ss_dssp EEEEEETTEEEEEEEESSCCCSCSSC------------------------CCTTSHHHHHHHHHHHTTCEEEEECSS--S
T ss_pred EEEEEeCCEEEEEEEECCcCcCcccC------------------------CCCCccHHHHHHHHHHcCCEEEEEeCC--C
Confidence 99999999999999999999998743 378999999999999999999999977 9
Q ss_pred EEEEEEeeCC
Q psy14548 351 TDAIIYLKAL 360 (482)
Q Consensus 351 t~f~i~lp~~ 360 (482)
|+|+++||..
T Consensus 117 t~~~i~lP~~ 126 (128)
T 3ehg_A 117 TKLTMAIPNN 126 (128)
T ss_dssp EEEEEEEEC-
T ss_pred EEEEEEEecC
Confidence 9999999964
No 22
>3zxo_A Redox sensor histidine kinase response regulator; transferase; HET: MSE; 1.90A {Mycobacterium tuberculosis}
Probab=99.72 E-value=9.9e-18 Score=143.94 Aligned_cols=124 Identities=20% Similarity=0.215 Sum_probs=97.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEeeccCCCCCeEEEechhHHHHHHHHHHHHHHHHhhhcCCCCCCCCCE
Q psy14548 190 QCDLIGVVKDAYENARFLCEQYYLSSPELKVTEHNEYEKGEPVRIIYVPSHLYHMLFELFKNSMRATVEHHTDTDVLPPI 269 (482)
Q Consensus 190 ~~~l~~li~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~L~~il~NLl~NAik~t~~~~~~~~~~p~I 269 (482)
.+++.++++++++.+. ...+.+.+... .........++..|.+++.||+.||+||+..+. |
T Consensus 4 ~~~l~~~l~~~~~~~~---------~~~~~~~~~~~--~~~~~~~~~~~~~l~~il~nll~NA~k~~~~~~--------i 64 (129)
T 3zxo_A 4 VTRLRQRIDAAVAQFA---------DSGLRTSVQFV--GPLSVVDSALADQAEAVVREAVSNAVRHAAAST--------L 64 (129)
T ss_dssp -CCHHHHHHHHHHHHS---------CTTSEEEEEEE--SCGGGSCHHHHHHHHHHHHHHHHHCCCCSSCCE--------E
T ss_pred cccHHHHHHHHHHHHh---------hcCceEEEEec--CCcccCCHHHHHHHHHHHHHHHHHHHHhCCCce--------E
Confidence 3478888887777651 33445544432 222222344588999999999999999984332 9
Q ss_pred EEEEEecCceeEEEEEEcCCCCChhhHhhhhhcccccCCCCCCCCCCCCCCCCcccCHHHHHHHHHHhCCEEEEEeecC-
Q psy14548 270 EVSVVRGKEDICVKMSDKGGGIPRSVTDMLFHYMYSTAPQPSKSDAHTVPLAGYGYGLPISRLYARYFHGDIMLLSCDG- 348 (482)
Q Consensus 270 ~v~~~~~~~~~~i~V~D~G~GI~~~~~~~if~~f~~t~~~~~~~~~~~~~~~G~GLGL~i~r~~~~~~gG~i~v~s~~g- 348 (482)
.|.+...++ +.|.|+|+|+||+++. +|+||++++.+++.|||++.+.+.++
T Consensus 65 ~i~~~~~~~-~~i~v~D~G~gi~~~~---------------------------~GlGL~i~~~~~~~~gG~i~~~~~~~~ 116 (129)
T 3zxo_A 65 TVRVKVDDD-LCIEVTDNGRGMPDEF---------------------------TGSGLTNLRQRAEQAGGEFTLASMPGA 116 (129)
T ss_dssp EEEEEESSE-EEEEEEECCCCCTTTT---------------------------CSHHHHHHHHHHHHTTCEEEEEECTTT
T ss_pred EEEEEEcCC-EEEEEecCCCCCCccc---------------------------CCcCHHHHHHHHHHcCCEEEEeeCCCC
Confidence 999998888 9999999999998753 58999999999999999999999988
Q ss_pred CcEEEEEEeeCC
Q psy14548 349 LGTDAIIYLKAL 360 (482)
Q Consensus 349 ~Gt~f~i~lp~~ 360 (482)
+|++|+++||..
T Consensus 117 ~G~~~~i~lP~~ 128 (129)
T 3zxo_A 117 SGTVLRWSAPLS 128 (129)
T ss_dssp CCEEEEEEEESC
T ss_pred CcEEEEEEecCC
Confidence 899999999963
No 23
>3zxq_A Hypoxia sensor histidine kinase response regulato; transferase; 1.90A {Mycobacterium tuberculosis}
Probab=99.70 E-value=5e-17 Score=138.62 Aligned_cols=121 Identities=19% Similarity=0.146 Sum_probs=93.4
Q ss_pred CHHHHHHHHHHHHHHHHHHhhcCCCCceEEEeeccCCCCCeEEEechhHHHHHHHHHHHHHHHHhhhcCCCCCCCCCEEE
Q psy14548 192 DLIGVVKDAYENARFLCEQYYLSSPELKVTEHNEYEKGEPVRIIYVPSHLYHMLFELFKNSMRATVEHHTDTDVLPPIEV 271 (482)
Q Consensus 192 ~l~~li~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~L~~il~NLl~NAik~t~~~~~~~~~~p~I~v 271 (482)
++.+.+.++++.+ ....+.+.+.... ..+.....++..|.+++.||+.||+||+..+. |.|
T Consensus 2 ~l~~~l~~~~~~~---------~~~~~~~~~~~~~--~~~~~~~~~~~~l~~il~nll~Na~k~~~~~~--------i~i 62 (124)
T 3zxq_A 2 GLRHRLDKVIDQL---------AIPALHTTVQYTG--PLSVVDTVLANHAEAVLREAVSNAVRHANATS--------LAI 62 (124)
T ss_dssp CHHHHHHHHHHHH---------TTTTSEEEEEEES--CGGGCCHHHHHHHHHHHHHHHHHHHTCTTCCE--------EEE
T ss_pred cHHHHHHHHHHHH---------HhcCceEEEEeeC--ccccccHHHHHHHHHHHHHHHHHHHHhCCCCE--------EEE
Confidence 4555555555544 1344455444321 22222334578899999999999999996432 999
Q ss_pred EEEecCceeEEEEEEcCCCCChhhHhhhhhcccccCCCCCCCCCCCCCCCCcccCHHHHHHHHHHhCCEEEEEeecCCcE
Q psy14548 272 SVVRGKEDICVKMSDKGGGIPRSVTDMLFHYMYSTAPQPSKSDAHTVPLAGYGYGLPISRLYARYFHGDIMLLSCDGLGT 351 (482)
Q Consensus 272 ~~~~~~~~~~i~V~D~G~GI~~~~~~~if~~f~~t~~~~~~~~~~~~~~~G~GLGL~i~r~~~~~~gG~i~v~s~~g~Gt 351 (482)
.+...++ +.|.|+|+|+||+++. .|+||++++.+++.|||++.+.+.+++|+
T Consensus 63 ~~~~~~~-~~i~v~D~G~gi~~~~---------------------------~GlGL~~~~~~~~~~gG~i~~~~~~~~G~ 114 (124)
T 3zxq_A 63 NVSVEDD-VRVEVVDDGVGISGDI---------------------------TESGLRNLRQRADDAGGEFTVENMPTGGT 114 (124)
T ss_dssp EEEEEEE-EEEEEEECCCSSCGGG---------------------------SHHHHHHHHHHHHHHTCEEEEEECTTSSE
T ss_pred EEEeCCC-EEEEEEECCCCCCccc---------------------------cccCHHHHHHHHHHhCCEEEEEEcCCCcE
Confidence 9988888 9999999999999863 38999999999999999999999999999
Q ss_pred EEEEEeeC
Q psy14548 352 DAIIYLKA 359 (482)
Q Consensus 352 ~f~i~lp~ 359 (482)
+|+++||.
T Consensus 115 ~~~i~lP~ 122 (124)
T 3zxq_A 115 LLRWSAPL 122 (124)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEec
Confidence 99999996
No 24
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=99.69 E-value=1.3e-16 Score=166.28 Aligned_cols=118 Identities=23% Similarity=0.243 Sum_probs=97.5
Q ss_pred EEechhHHHHHHHHHHHHHHHHhhhcCCCCCCCCCEEEEEEecC---ceeEEEEEEcCCCCChhhHhhhhhcccccCCCC
Q psy14548 234 IIYVPSHLYHMLFELFKNSMRATVEHHTDTDVLPPIEVSVVRGK---EDICVKMSDKGGGIPRSVTDMLFHYMYSTAPQP 310 (482)
Q Consensus 234 v~~d~~~L~~il~NLl~NAik~t~~~~~~~~~~p~I~v~~~~~~---~~~~i~V~D~G~GI~~~~~~~if~~f~~t~~~~ 310 (482)
+..|+..|.+|+.||++||++|+..++. .|.|.|.+...+ +.+.|+|+|+|.||++++++++|++||++....
T Consensus 26 ~~~d~~~L~qvl~nLv~NAida~~~gg~----~p~I~I~i~~~~~~~~~~~I~V~DnG~GI~~e~l~~iF~~f~~tsk~~ 101 (471)
T 1mu5_A 26 FPNPARALYQTVRELIENSLDATDVHGI----LPNIKITIDLIDDARQIYKVNVVDNGIGIPPQEVPNAFGRVLYSSKYV 101 (471)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHTTGGGTC----CCEEEEEEEEEETTTTEEEEEEECCSCCCCGGGHHHHHHCCCCC-CCC
T ss_pred EeCCHHHHHHHHHHHHHHHHHHhhcCCC----ceEEEEEEEECCCcCcEEEEEEEECCCCCCHHHHHHHhcccccccccc
Confidence 4567899999999999999999987651 123888887654 789999999999999999999999998764321
Q ss_pred CCCCCCCCCCCCcccCHHHHHHHHHHhCCE-EEEEeecCCcE-EEEEEeeCC
Q psy14548 311 SKSDAHTVPLAGYGYGLPISRLYARYFHGD-IMLLSCDGLGT-DAIIYLKAL 360 (482)
Q Consensus 311 ~~~~~~~~~~~G~GLGL~i~r~~~~~~gG~-i~v~s~~g~Gt-~f~i~lp~~ 360 (482)
.....+|+|+||++|+.+++.|||+ |.+.|..+.|+ .|++.||..
T Consensus 102 -----~~~~~gg~GLGL~iv~~l~~~~gG~~i~v~S~~~~g~~~~~~~Lpl~ 148 (471)
T 1mu5_A 102 -----NRQTRGMYGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLKID 148 (471)
T ss_dssp -----CSCCSCSCTTTHHHHHHHHHHHCCCCEEEEEECTTCSEEEEEEEEEC
T ss_pred -----cccCCCCceeeHHHHHHHHHHhCCCceeEEEecCCCceEEEEEEecc
Confidence 2244578999999999999999999 99999988876 777777754
No 25
>1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A*
Probab=99.68 E-value=1.2e-16 Score=140.37 Aligned_cols=107 Identities=17% Similarity=0.247 Sum_probs=87.1
Q ss_pred echhHHHHHHHHHHHHHHHHhhhcCCCCCCCCCEEEEEEecCceeEEEEEEcCCCCChhhHhhhhhcccccCCCCCCCCC
Q psy14548 236 YVPSHLYHMLFELFKNSMRATVEHHTDTDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVTDMLFHYMYSTAPQPSKSDA 315 (482)
Q Consensus 236 ~d~~~L~~il~NLl~NAik~t~~~~~~~~~~p~I~v~~~~~~~~~~i~V~D~G~GI~~~~~~~if~~f~~t~~~~~~~~~ 315 (482)
.|...+.+++.||+.||++|+.... ..+.|.|.+...++.+.|.|+|+|.||+ .++++|++|++++.
T Consensus 35 ~~~~~l~~il~~l~~Nai~h~~~~~----~~~~I~i~~~~~~~~~~i~V~D~G~g~~--~~~~~~~~~~~~~~------- 101 (145)
T 1th8_A 35 DELTEIKTVVSEAVTNAIIHGYNND----PNGIVSISVIIEDGVVHLTVRDEGVGIP--DIEEARQPLFTTKP------- 101 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSTTC----TTSEEEEEEEEETTEEEEEEEECSSCCS--CHHHHTCCC------------
T ss_pred hhHHHHHHHHHHHHHHHHHHhcCCC----CCCEEEEEEEEeCCEEEEEEEECCCCcC--hHHHhhcccccCCC-------
Confidence 5678899999999999999986631 1123999998888999999999999999 88999999998542
Q ss_pred CCCCCCCcccCHHHHHHHHHHhCCEEEEEeecCCcEEEEEEeeCCCC
Q psy14548 316 HTVPLAGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLKALSN 362 (482)
Q Consensus 316 ~~~~~~G~GLGL~i~r~~~~~~gG~i~v~s~~g~Gt~f~i~lp~~~~ 362 (482)
...|.|+||++++.+++ ++.+.+.+++||+|++++|....
T Consensus 102 ---~~~~~GlGL~iv~~~~~----~i~~~~~~~~Gt~v~~~lp~~~~ 141 (145)
T 1th8_A 102 ---ELERSGMGFTIMENFMD----EVIVESEVNKGTTVYLKKHGIHH 141 (145)
T ss_dssp -----CCCSCHHHHHHHHSS----EEEEEEETTTEEEEEEEECCC--
T ss_pred ---CCCCCcchHHHHHHHHh----eEEEEeCCCCCEEEEEEEecccc
Confidence 23589999999999988 89999999999999999997643
No 26
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=99.67 E-value=1.4e-16 Score=168.06 Aligned_cols=120 Identities=23% Similarity=0.231 Sum_probs=97.6
Q ss_pred eEEEec-hhHHHHHHHHHHHHHHHHhhhcCCCCCCCCCEEEEEEecC---ceeEEEEEEcCCCCChhhHhhhhhcccccC
Q psy14548 232 VRIIYV-PSHLYHMLFELFKNSMRATVEHHTDTDVLPPIEVSVVRGK---EDICVKMSDKGGGIPRSVTDMLFHYMYSTA 307 (482)
Q Consensus 232 ~~v~~d-~~~L~~il~NLl~NAik~t~~~~~~~~~~p~I~v~~~~~~---~~~~i~V~D~G~GI~~~~~~~if~~f~~t~ 307 (482)
+.+..+ +..|.|++.||++||++|+..++. .|.|.|.+...+ +.+.|+|+|+|.||++++++++|++|+++.
T Consensus 22 l~i~~~d~~~L~qvl~NLV~NAida~~~gg~----~p~I~I~i~~~~~~~~~~~I~V~DnG~GI~~e~l~~iF~~f~~ts 97 (530)
T 2zbk_B 22 LAGFPNPARALYQTVRELIENSLDATDVHGI----LPNIKITIDLIDDARQIYKVNVVDNGIGIPPQEVPNAFGRVLYSS 97 (530)
T ss_dssp GGTCSSHHHHHHHHHHHHHHHHHTTTTTTTC----CCCCEEEEEEEETTTTEEEEEEECCSCCCCGGGSHHHHTSCCCSC
T ss_pred ceEEcCcHHHHHHHHHHHHHHHHHHHhccCC----CeEEEEEEEECCCcCceEEEEEEECCCCCCHHHHHHHhccccccC
Confidence 334444 589999999999999999977641 234888887655 789999999999999999999999998764
Q ss_pred CCCCCCCCCCCCCCCcccCHHHHHHHHHHhCCE-EEEEeecCCcE-EEEEEeeCC
Q psy14548 308 PQPSKSDAHTVPLAGYGYGLPISRLYARYFHGD-IMLLSCDGLGT-DAIIYLKAL 360 (482)
Q Consensus 308 ~~~~~~~~~~~~~~G~GLGL~i~r~~~~~~gG~-i~v~s~~g~Gt-~f~i~lp~~ 360 (482)
... .....+|+|+||++|+.+++.|||+ |.+.|..+.|+ .|.+.||..
T Consensus 98 k~~-----~~~~~gg~GLGLsiv~~l~~~~gG~~I~V~S~~~~g~~~~~~~Lpl~ 147 (530)
T 2zbk_B 98 KYV-----NRQTRGMYGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLKID 147 (530)
T ss_dssp CCC-----CSCCSCSSSSHHHHHHHHHHHHCCCCEEEEEECTTCSEEEEEEEEEE
T ss_pred Ccc-----cccCCCCccchHHHHHHHHHHhCCCceEEEEecCCCeEEEEEEEEec
Confidence 321 2245579999999999999999999 99999988876 777777653
No 27
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei}
Probab=99.50 E-value=3.9e-14 Score=151.33 Aligned_cols=120 Identities=23% Similarity=0.247 Sum_probs=94.6
Q ss_pred EEEechhHHHHHHHHHHHHHHHHhhhcCCCCCCCCCEEEEEEecC-ceeEEEEEEcCCCCChhhHhhhhhcccccCCCCC
Q psy14548 233 RIIYVPSHLYHMLFELFKNSMRATVEHHTDTDVLPPIEVSVVRGK-EDICVKMSDKGGGIPRSVTDMLFHYMYSTAPQPS 311 (482)
Q Consensus 233 ~v~~d~~~L~~il~NLl~NAik~t~~~~~~~~~~p~I~v~~~~~~-~~~~i~V~D~G~GI~~~~~~~if~~f~~t~~~~~ 311 (482)
.+.+|+..|.+++.||++||++|+..++. .+.|.|.+...+ +.+.|+|+|+|.|||+++++++|++|+++.....
T Consensus 30 ~~~~D~~~L~~Vl~ELV~NAIDa~~~~g~----~~~I~V~i~~~~~~~~~I~V~DnG~GIp~e~l~~iF~~~~atskf~~ 105 (621)
T 2q2e_B 30 GFDSAPRSLITTVKEAVDNALDACEEAGI----LPDILVQVERTGPDYVTVIIEDNGPGIVREQIPKVFAKLLYGSRFHA 105 (621)
T ss_dssp SCSSHHHHHHHHHHHHHHHHHHHHTTTSC----SCEEEECCEEETTTEEEEEEECCSCCCCGGGHHHHHSCCCCC--CCC
T ss_pred EEecCHHHHHHHHHHHHHHHHHHHhhcCC----CcEEEEEEEECCCcEEEEEEEECCCCCCHHHHHHHhhhhccCCcccc
Confidence 35689999999999999999999975441 223888888776 7789999999999999999999999877643211
Q ss_pred CCCCCCCCCCCcccCHHHHHHHHHHhCCE-EEEEeecC---CcEEEEEEeeCC
Q psy14548 312 KSDAHTVPLAGYGYGLPISRLYARYFHGD-IMLLSCDG---LGTDAIIYLKAL 360 (482)
Q Consensus 312 ~~~~~~~~~~G~GLGL~i~r~~~~~~gG~-i~v~s~~g---~Gt~f~i~lp~~ 360 (482)
.....+|+|+||++++.+++.|||. |.+.|..+ .|++|.+.+|..
T Consensus 106 ----~~~s~Gg~GlGLsiv~~ls~~~gG~~I~V~S~~~gg~~g~~~~~~lp~~ 154 (621)
T 2q2e_B 106 ----LKQSRGQQGIGISAAVLYAQMTAGRHTKILSKTSPTAPAHYYELMINTS 154 (621)
T ss_dssp ----CC-CCSSSSHHHHHHHHHHHHHTCCCCEEEEECSSSSCEEEEECCCCSS
T ss_pred ----ccccCCCceechhhhhHHHHHhCCCceeEEeeccCCccceEEEEecchh
Confidence 1133478999999999999999999 88888776 466666666654
No 28
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens}
Probab=98.75 E-value=2.3e-08 Score=99.71 Aligned_cols=93 Identities=17% Similarity=0.166 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCCCCCCEEEEEEecCceeEEEEEEcCCCCChhhHhhhhhcccccCCCCCCCCCCCCC
Q psy14548 240 HLYHMLFELFKNSMRATVEHHTDTDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVTDMLFHYMYSTAPQPSKSDAHTVP 319 (482)
Q Consensus 240 ~L~~il~NLl~NAik~t~~~~~~~~~~p~I~v~~~~~~~~~~i~V~D~G~GI~~~~~~~if~~f~~t~~~~~~~~~~~~~ 319 (482)
.+.+++.||++||++|... .|.|.+.. ++...|+|+|||.|||+++++++|++|++++.....|-.....
T Consensus 28 ~~~~vv~eLv~NAidA~a~---------~I~I~i~~-~~~~~I~V~DnG~GI~~~~l~~~~~~~~tsK~~~~~dl~~i~s 97 (348)
T 3na3_A 28 RPANAIKEMIENCLDAKST---------SIQVIVKE-GGLKLIQIQDNGTGIRKEDLDIVCERFTTSKLQSFEDLASIST 97 (348)
T ss_dssp SHHHHHHHHHHHHHHTTCS---------EEEEEEEG-GGTSEEEEEECSCCCCGGGGGTTTSTTCCSSCCCC--------
T ss_pred CHHHHHHHHHHHHHHcCCC---------EEEEEEEe-CCEEEEEEEECCcCcChHHhhhhhccccccccCcchhhhcccc
Confidence 4679999999999999522 18888863 4456799999999999999999999999987542112112233
Q ss_pred CCCcccCHHHHHHHHHHhCCEEEEEeec
Q psy14548 320 LAGYGYGLPISRLYARYFHGDIMLLSCD 347 (482)
Q Consensus 320 ~~G~GLGL~i~r~~~~~~gG~i~v~s~~ 347 (482)
.+-.|.||+-+..+. .+.+.|..
T Consensus 98 ~GfrGeaL~Si~avs-----~l~v~sr~ 120 (348)
T 3na3_A 98 YGFRGEALASISHVA-----HVTITTKT 120 (348)
T ss_dssp -CCTTCHHHHHHHSS-----EEEEEEEC
T ss_pred CCcCChHHHHhhccc-----EEEEEEEE
Confidence 445678887665543 57777755
No 29
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A*
Probab=98.70 E-value=2.9e-08 Score=100.10 Aligned_cols=84 Identities=18% Similarity=0.098 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCCCCCCEEEEEEecCceeEEEEEEcCCCCChhhHhhhhhcccccCCCCCCCCCCCCC
Q psy14548 240 HLYHMLFELFKNSMRATVEHHTDTDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVTDMLFHYMYSTAPQPSKSDAHTVP 319 (482)
Q Consensus 240 ~L~~il~NLl~NAik~t~~~~~~~~~~p~I~v~~~~~~~~~~i~V~D~G~GI~~~~~~~if~~f~~t~~~~~~~~~~~~~ 319 (482)
.+.+++.||++||++|... .|.|.+.. ++...|+|.|+|.||++++++++|++|++++.....|......
T Consensus 34 ~~~~vl~eLv~NAiDA~a~---------~I~I~i~~-~~~~~I~V~DnG~Gi~~~~l~~~f~~~~tsK~~~~~dl~~i~s 103 (365)
T 1h7s_A 34 SLSTAVKELVENSLDAGAT---------NIDLKLKD-YGVDLIEVSDNGCGVEEENFEGLTLKHHTSKIQEFADLTQVET 103 (365)
T ss_dssp CHHHHHHHHHHHHHHTTCS---------EEEEEEEG-GGTSEEEEEECSCCCCGGGSGGGGC----------CCTTCSEE
T ss_pred hHHHHHHHHHHHHHHCCCC---------EEEEEEEe-CCcEEEEEEECCCCcCHHHHHHHhhhccccccccccchhcccc
Confidence 5689999999999998632 18888864 3457899999999999999999999999975321011111111
Q ss_pred CCCcccCHHHHHHH
Q psy14548 320 LAGYGYGLPISRLY 333 (482)
Q Consensus 320 ~~G~GLGL~i~r~~ 333 (482)
.+-.|+||+.+..+
T Consensus 104 ~G~rG~gl~si~~v 117 (365)
T 1h7s_A 104 FGFRGEALSSLCAL 117 (365)
T ss_dssp ESSSSSHHHHHHHH
T ss_pred cCCCCchhhhhhhh
Confidence 23348888877654
No 30
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A*
Probab=98.68 E-value=1.7e-08 Score=100.75 Aligned_cols=93 Identities=17% Similarity=0.193 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCCCCCCEEEEEEecCceeEEEEEEcCCCCChhhHhhhhhcccccCCCCCCCCCCCCC
Q psy14548 240 HLYHMLFELFKNSMRATVEHHTDTDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVTDMLFHYMYSTAPQPSKSDAHTVP 319 (482)
Q Consensus 240 ~L~~il~NLl~NAik~t~~~~~~~~~~p~I~v~~~~~~~~~~i~V~D~G~GI~~~~~~~if~~f~~t~~~~~~~~~~~~~ 319 (482)
.+.+++.||++||++|... . |.|.+.. ++...|+|.|+|.||++++++.+|++|++++.....|......
T Consensus 24 ~~~~~v~ELi~NaidA~a~-~--------I~I~i~~-~~~~~i~V~DnG~Gi~~~~l~~~~~~~~tsK~~~~~d~~~~~~ 93 (333)
T 1b63_A 24 RPASVVKELVENSLDAGAT-R--------IDIDIER-GGAKLIRIRDNGCGIKKDELALALARHATSKIASLDDLEAIIS 93 (333)
T ss_dssp SHHHHHHHHHHHHHHTTCS-E--------EEEEEEG-GGTSEEEEEECSCCCCGGGHHHHHSTTCCSSCCSHHHHHTCCS
T ss_pred CHHHHHHHHHHHHHHCCCC-e--------EEEEEEe-CCceEEEEEEcCCCcCHHHHHHhhhcccccCccccchhhhccc
Confidence 5789999999999999732 1 8888875 3346899999999999999999999999864210000001134
Q ss_pred CCCcccCHHHHHHHHHHhCCEEEEEeec
Q psy14548 320 LAGYGYGLPISRLYARYFHGDIMLLSCD 347 (482)
Q Consensus 320 ~~G~GLGL~i~r~~~~~~gG~i~v~s~~ 347 (482)
.++.|+||+.+..+. .+.+.|..
T Consensus 94 ~G~~G~gl~si~~vs-----~l~v~s~~ 116 (333)
T 1b63_A 94 LGFRGEALASISSVS-----RLTLTSRT 116 (333)
T ss_dssp SCCSSCHHHHHHTTS-----EEEEEEEC
T ss_pred cCccccchhhhhcCC-----cEEEEEec
Confidence 567899998876542 45665544
No 31
>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2
Probab=98.59 E-value=1.6e-08 Score=102.85 Aligned_cols=89 Identities=15% Similarity=0.160 Sum_probs=61.0
Q ss_pred EechhHHHHHHHHHHHHHHHHhhhcCCCCCCCCCEEEEEEecCceeEEEEEEcCCCCChhhHhh--------hhhccccc
Q psy14548 235 IYVPSHLYHMLFELFKNSMRATVEHHTDTDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVTDM--------LFHYMYST 306 (482)
Q Consensus 235 ~~d~~~L~~il~NLl~NAik~t~~~~~~~~~~p~I~v~~~~~~~~~~i~V~D~G~GI~~~~~~~--------if~~f~~t 306 (482)
.++...+..++.|+++||+++. . ..|.|.+..++ .|+|.|+|+|||++++++ +|..|+++
T Consensus 31 ~g~~~~v~Elv~N~iD~a~~~~--~-------~~I~V~i~~~~---~i~V~DnG~GIp~~~~~~~~~~~~e~if~~~~~~ 98 (390)
T 1kij_A 31 EGYHHLFKEILDNAVDEALAGY--A-------TEILVRLNEDG---SLTVEDNGRGIPVDLMPEEGKPAVEVIYNTLHSG 98 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTS--C-------CEEEEEECTTS---CEEEEECSSCCCCSEETTTTEEHHHHHHHSSCEE
T ss_pred chHHHHHHHHHHHHHHHhhhCC--C-------CEEEEEEEcCC---EEEEEEcCCCCCHHHhhhccccchhhheeeeeec
Confidence 3556666666666666666531 1 22888875442 799999999999999887 99988876
Q ss_pred CCCCCCCCCCCCCCCCcccCHHHHHHHHHHh
Q psy14548 307 APQPSKSDAHTVPLAGYGYGLPISRLYARYF 337 (482)
Q Consensus 307 ~~~~~~~~~~~~~~~G~GLGL~i~r~~~~~~ 337 (482)
.... ++......++.|+||++|+.+++.+
T Consensus 99 ~kf~--~~~~~~s~G~~G~Gls~v~als~~~ 127 (390)
T 1kij_A 99 GKFE--QGAYKVSGGLHGVGASVVNALSEWT 127 (390)
T ss_dssp SGGG--GSSCCCCSCSSTTSHHHHHHTEEEE
T ss_pred cccc--CccccccCCCCCcceeeecccccce
Confidence 4210 1111223467999999999998754
No 32
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A*
Probab=98.55 E-value=1.8e-08 Score=102.94 Aligned_cols=64 Identities=61% Similarity=1.150 Sum_probs=55.7
Q ss_pred CCcccCCCCcccchhhhhcccCCceeEEecccccccEEEEecccCccccccccchhcccccccC
Q psy14548 419 TVPLAGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLKALSNEANELLPIFNKTSSKFYR 482 (482)
Q Consensus 419 ~~pla~~g~glp~~~~~a~~~~~~~~~~~~~g~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (482)
..+..|.|+||++++.+++++||++.+.+.+|+|++++|+|+..+..+.|++|+||+++++||+
T Consensus 307 ~~~~~G~GLGL~i~~~i~~~~gG~i~v~s~~g~Gt~f~i~lP~~~~~~~e~~p~~~~~~~~~~~ 370 (394)
T 2btz_A 307 GTPLAGFGYGLPISRLYAKYFQGDLQLFSMEGFGTDAVIYLKALSTDSVERLPVYNKSAWRHYQ 370 (394)
T ss_dssp -------CCHHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEESSTTTCBCCCCCCCHHHHGGGC
T ss_pred CCCCCCccCCHHHHHHHHHHhCCEEEEEecCCCceEEEEEecCCCCCCCCCCCccCcchhhhcc
Confidence 4567899999999999999999999999999999999999999998889999999999999995
No 33
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A
Probab=98.53 E-value=2.5e-08 Score=102.47 Aligned_cols=65 Identities=62% Similarity=1.112 Sum_probs=61.3
Q ss_pred CCCcccCCCCcccchhhhhcccCCceeEEecccccccEEEEecccCccccccccchhcccccccC
Q psy14548 418 HTVPLAGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLKALSNEANELLPIFNKTSSKFYR 482 (482)
Q Consensus 418 ~~~pla~~g~glp~~~~~a~~~~~~~~~~~~~g~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (482)
...+..|.|+||++++.+++++||++.+.+.+|+|++++|+|+..+..+.|++|+|++++++||+
T Consensus 319 ~~~~~~G~GLGL~Ivr~i~~~~gG~i~v~s~~g~Gt~f~i~LP~~~~~~~e~~p~~~~~~~~~~~ 383 (407)
T 2q8g_A 319 RAVPLAGFGYGLPISRLYAQYFQGDLKLYSLEGYGTDAVIYIKALSTDSIERLPVYNKAAWKHYN 383 (407)
T ss_dssp SCCCSSCTTCHHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEESSGGGCBCCCCCCSHHHHHHHS
T ss_pred CCCCCCCcCCCHHHHHHHHHHhCCEEEEEEcCCCceEEEEEECCCCCCCCCCCCCcCchHHHhhc
Confidence 34567899999999999999999999999999999999999999998889999999999999995
No 34
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae}
Probab=98.53 E-value=9.8e-08 Score=96.01 Aligned_cols=93 Identities=23% Similarity=0.199 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCCCCCCEEEEEEecCceeEEEEEEcCCCCChhhHhhhhhcccccCCCCCCCCCCCCC
Q psy14548 240 HLYHMLFELFKNSMRATVEHHTDTDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVTDMLFHYMYSTAPQPSKSDAHTVP 319 (482)
Q Consensus 240 ~L~~il~NLl~NAik~t~~~~~~~~~~p~I~v~~~~~~~~~~i~V~D~G~GI~~~~~~~if~~f~~t~~~~~~~~~~~~~ 319 (482)
.+.+++.||++||+++... . |.|.+. .++...|+|.|||.||++++++.+|++|++++.....|-.....
T Consensus 25 ~~~~vv~eLv~NaiDA~a~-~--------I~I~i~-~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~tsK~~~~~Dl~~i~t 94 (367)
T 3h4l_A 25 DLTTAVKELVDNSIDANAN-Q--------IEIIFK-DYGLESIECSDNGDGIDPSNYEFLALKHYTSKIAKFQDVAKVQT 94 (367)
T ss_dssp SHHHHHHHHHHHHHHTTCS-E--------EEEEEE-TTTTSEEEEEECSCCCCGGGTTTTTCCEEC---------CCCCE
T ss_pred CHHHHHHHHHHHHHHCCCC-E--------EEEEEE-eCCEEEEEEEECCCCcChhHhccceeccccCcCCchhhhhhhhc
Confidence 4679999999999998622 1 888875 34567899999999999999999999999986432111111111
Q ss_pred CCCcccCHHHHHHHHHHhCCEEEEEeec
Q psy14548 320 LAGYGYGLPISRLYARYFHGDIMLLSCD 347 (482)
Q Consensus 320 ~~G~GLGL~i~r~~~~~~gG~i~v~s~~ 347 (482)
.+-.|.||+-+..+. .+.+.|..
T Consensus 95 ~GfrGeaL~Si~avS-----~l~V~sr~ 117 (367)
T 3h4l_A 95 LGFRGEALSSLCGIA-----KLSVITTT 117 (367)
T ss_dssp EEETTHHHHHHHHSS-----EEEEEEES
T ss_pred cCccchHHHHhhccC-----EEEEEEEE
Confidence 222366666554432 45555543
No 35
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A*
Probab=98.50 E-value=3.2e-08 Score=101.13 Aligned_cols=64 Identities=67% Similarity=1.141 Sum_probs=60.3
Q ss_pred CCcccCCCCcccchhhhhcccCCceeEEecccccccEEEEecccCccccccccchhcccccccC
Q psy14548 419 TVPLAGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLKALSNEANELLPIFNKTSSKFYR 482 (482)
Q Consensus 419 ~~pla~~g~glp~~~~~a~~~~~~~~~~~~~g~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (482)
..+.+|.|+||++++.+++++||++.+.+.+|+|++++|+|+..+..+.|++|+|++++++||+
T Consensus 307 ~~~~~G~GLGL~i~~~i~~~~gG~i~v~s~~g~Gt~f~i~lP~~~~~~~e~lp~~~~~~~~~~~ 370 (394)
T 2e0a_A 307 NAPLAGFGYGLPISRLYAKYFQGDLNLYSLSGYGTDAIIYLKALSSESIEKLPVFNKSAFKHYQ 370 (394)
T ss_dssp CCCSSCSSCHHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEESSGGGCBCCCCCCSHHHHHHC-
T ss_pred CCCCCCcccCHHHHHHHHHHhCCEEEEEecCCccEEEEEEeCCCCCCccCCCCCcCchHHHHhc
Confidence 4567899999999999999999999999999999999999999998889999999999999995
No 36
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A*
Probab=98.48 E-value=3.2e-08 Score=102.04 Aligned_cols=65 Identities=65% Similarity=1.159 Sum_probs=58.0
Q ss_pred CCCcccCCCCcccchhhhhcccCCceeEEecccccccEEEEecccCccccccccchhcccccccC
Q psy14548 418 HTVPLAGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLKALSNEANELLPIFNKTSSKFYR 482 (482)
Q Consensus 418 ~~~pla~~g~glp~~~~~a~~~~~~~~~~~~~g~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (482)
...+.+|.|+||++++.+++++||++.+.+.+|+|++++|+|+..+..+.|++|+|+++++++|.
T Consensus 330 ~~~~~~G~GLGL~I~k~iv~~~gG~I~v~s~~g~Gt~f~i~LP~~~~~~~e~~p~~~~~~~~~~~ 394 (419)
T 1y8o_A 330 RAAPLAGFGYGLPISRLYARYFQGDLKLYSMEGVGTDAVIYLKALSSESFERLPVFNKSAWRHYK 394 (419)
T ss_dssp ---CC--CTTHHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEESCGGGCBCCCCCCSHHHHHHHS
T ss_pred CCCCcCCeecCHHHHHHHHHHhCCEEEEEecCCCCEEEEEEecCCCCCcCCCCCccChhHHHHhc
Confidence 34567899999999999999999999999999999999999999998889999999999999995
No 37
>3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis}
Probab=98.38 E-value=4.4e-07 Score=92.90 Aligned_cols=91 Identities=16% Similarity=0.213 Sum_probs=62.6
Q ss_pred hhHHHHHHHHHHHHHHHHhhhcCCCCCCCCCEEEEEEec-CceeEEEEEEcCCCCChhhHhhhhhcccccCCCCCCCCCC
Q psy14548 238 PSHLYHMLFELFKNSMRATVEHHTDTDVLPPIEVSVVRG-KEDICVKMSDKGGGIPRSVTDMLFHYMYSTAPQPSKSDAH 316 (482)
Q Consensus 238 ~~~L~~il~NLl~NAik~t~~~~~~~~~~p~I~v~~~~~-~~~~~i~V~D~G~GI~~~~~~~if~~f~~t~~~~~~~~~~ 316 (482)
...+..++.||+.||++|+.... ..++|.|.+... ++.+.|.|+|+|+|+|+. ..
T Consensus 295 ~~~~~l~v~El~~Nav~Ha~~~~----~~g~i~v~~~~~~~~~l~i~V~D~G~g~~~~----------~~---------- 350 (399)
T 3ke6_A 295 IADIVHAISEFVENAVEHGYATD----VSKGIVVAAALAGDGNVRASVIDRGQWKDHR----------DG---------- 350 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHBCCSC----CTTCEEEEEEECTTSEEEEEEEESCBC--------------------------
T ss_pred HHHHHHHHHHHHHHHHHhcccCC----CCceEEEEEEEcCCCEEEEEEEECCCCCCCC----------CC----------
Confidence 35788999999999999984321 123499998876 568999999999999886 10
Q ss_pred CCCCCCcccCHHHHHHHHHHhCCEEEEEeecCCcEEEEEEeeCC
Q psy14548 317 TVPLAGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLKAL 360 (482)
Q Consensus 317 ~~~~~G~GLGL~i~r~~~~~~gG~i~v~s~~g~Gt~f~i~lp~~ 360 (482)
..+.|+||.|++.+++.++ +.+ .+.|+++++.+|..
T Consensus 351 ---~~~~G~GL~lv~~l~~~~~----~~~-~~~G~~v~~~~~~~ 386 (399)
T 3ke6_A 351 ---ARGRGRGLAMAEALVSEAR----IMH-GAGGTTATLTHRLS 386 (399)
T ss_dssp ---------CHHHHHTTSSEEE----EEE-ETTEEEEEEEEECE
T ss_pred ---CCCCCcHHHHHHHHHHhee----eEE-CCCcEEEEEEEEcC
Confidence 0467999999999887554 444 36799999999864
No 38
>2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding, phosphoprotein, stress respo nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A* 2ygf_A* 2akp_A
Probab=98.22 E-value=1.1e-06 Score=82.40 Aligned_cols=91 Identities=14% Similarity=0.181 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHhhhcC-------CCCCCCCCEEEEEEecCceeEEEEEEcCCCCChhhHhhhhhcccccCCCC---CC
Q psy14548 243 HMLFELFKNSMRATVEHH-------TDTDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVTDMLFHYMYSTAPQP---SK 312 (482)
Q Consensus 243 ~il~NLl~NAik~t~~~~-------~~~~~~p~I~v~~~~~~~~~~i~V~D~G~GI~~~~~~~if~~f~~t~~~~---~~ 312 (482)
.+|.||++||++|..... ......+.+.|.+..+++...|.|.|||.||+++++...|..+.++.... ..
T Consensus 29 ~~lrELI~NA~DA~a~~~~~~~~~~~~~~~~~~i~I~i~~~~~~~~i~I~DnG~GMs~edl~~~l~~ia~S~~~~f~~k~ 108 (220)
T 2wer_A 29 IFLREIVSNASDALDKIRYKSLSDPKQLETEPDLFIRITPKPEQKVLEIRDSGIGMTKAELINNLGTIAKSGTKAFMEAL 108 (220)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCGGGGGGCCCCCEEEEEEGGGTEEEEEECSCCCCHHHHHHHTTTSCCTTHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHhhcccCchhccCCCcEEEEEEECCCCCEEEEEEcCCCCCHHHHHHHHHhHhcccchhHHHHh
Confidence 688999999999986310 00001123555555455566899999999999999988887654421000 00
Q ss_pred -CCCCCCCCCCcccCHHHHHHH
Q psy14548 313 -SDAHTVPLAGYGYGLPISRLY 333 (482)
Q Consensus 313 -~~~~~~~~~G~GLGL~i~r~~ 333 (482)
........+..|+|+.-+..+
T Consensus 109 ~~~~~~~~iG~fGiG~~s~~~~ 130 (220)
T 2wer_A 109 SAGADVSMIGQFGVGFYSLFLV 130 (220)
T ss_dssp TTTCCGGGGGGGTCGGGGGGGT
T ss_pred hccCCcccCCccchhHHHhhhc
Confidence 001122335578998655443
No 39
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A
Probab=98.16 E-value=5.8e-05 Score=68.95 Aligned_cols=156 Identities=10% Similarity=0.049 Sum_probs=84.3
Q ss_pred CchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHhhhhHHHHHHHHHHhhccccccCC
Q psy14548 99 STDTLDKFCKALVKIRNRHSDVVQTMAQGVMELKDSHDVDHQTENSIQYFLDRFYMSRISIRMLINQHTLLFGDELTRGD 178 (482)
Q Consensus 99 ~~~~~~~f~~~l~~~l~~~~~~i~~la~g~~e~~~~~~~~~~~~e~~~~~Ld~i~~sri~~r~Li~~~l~L~~~~~~~~~ 178 (482)
+....+++.+.+++..|++.|-+.++. |+.++.+ -++..+|++.+...... .. .+.+ .
T Consensus 14 ~l~~~~~~~~~LR~qrHdf~NkLqvI~-GLlql~~--------ydea~~yI~~~~~~~q~---~~----~~~~-i----- 71 (192)
T 1ixm_A 14 DTALTNELIHLLGHSRHDWMNKLQLIK-GNLSLQK--------YDRVFEMIEEMVIDAKH---ES----KLSN-L----- 71 (192)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHTTC--------HHHHHHHHHHHHHHHHH---HH----HHHT-T-----
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHH-HHHHcCC--------HHHHHHHHHHHHHHHHH---HH----HHHh-C-----
Confidence 344556777777766666666665554 6666654 36778888777643221 11 1111 0
Q ss_pred CCCCcccccCCCCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEeeccCCCCCeEEEechhHHHHHHHHHHHHHHHHhhh
Q psy14548 179 SSLRHIGCIDPQCDLIGVVKDAYENARFLCEQYYLSSPELKVTEHNEYEKGEPVRIIYVPSHLYHMLFELFKNSMRATVE 258 (482)
Q Consensus 179 ~~~~~ig~i~~~~~l~~li~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~~v~~d~~~L~~il~NLl~NAik~t~~ 258 (482)
.... +..+...++..+.++.+.+... ++. ..+...+. -+.||+.||+.+...
T Consensus 72 -------------~~P~--------la~lLl~K~~~a~e~~i~lev~-~~~--s~l~~~~~----~lgnLi~na~~Ai~~ 123 (192)
T 1ixm_A 72 -------------KTPH--------LAFDFLTFNWKTHYMTLEYEVL-GEI--KDLSAYDQ----KLAKLMRKLFHLFDQ 123 (192)
T ss_dssp -------------TCHH--------HHHHHHHGGGSCCSSEEEEEEE-SSC--CCCTTTHH----HHHHHHHHHHHHHHH
T ss_pred -------------CCHH--------HHHHHHHHHHHhccCCeEEEEe-cCc--cccCCCcH----HHHHHHHHHHHHHHh
Confidence 0001 1112222344677788876321 111 11222232 347788777777633
Q ss_pred cCCCCCCCCCEEEEEEec--CceeEEEEEEcCCCCChhhHhhhhhcccc
Q psy14548 259 HHTDTDVLPPIEVSVVRG--KEDICVKMSDKGGGIPRSVTDMLFHYMYS 305 (482)
Q Consensus 259 ~~~~~~~~p~I~v~~~~~--~~~~~i~V~D~G~GI~~~~~~~if~~f~~ 305 (482)
.. .....+.|.|.+... ++.+.|.|.|+|++|+++.++++|+..|+
T Consensus 124 ~~-~~~~~~~I~i~i~~~~~~~~l~i~V~d~G~~i~~e~~~~if~~~~~ 171 (192)
T 1ixm_A 124 AV-SRESENHLTVSLQTDHPDRQLILYLDFHGAFADPSAFDDIRQNGYE 171 (192)
T ss_dssp HB-CTTSCCEEEEEEECCCSSSSCEEEEEEESCBSCGGGCC--------
T ss_pred hh-ccCCCCeEEEEEEEecCCCEEEEEEEeCCCCCCHHHHHHHHhCCCC
Confidence 10 001234499999887 78899999999999999999999986665
No 40
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A*
Probab=98.08 E-value=9.6e-07 Score=84.95 Aligned_cols=117 Identities=18% Similarity=0.183 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHhhhc-------CCCCCCCCCEEEEEEecCceeEEEEEEcCCCCChhhHhhhhhcccccCCCC---CC
Q psy14548 243 HMLFELFKNSMRATVEH-------HTDTDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVTDMLFHYMYSTAPQP---SK 312 (482)
Q Consensus 243 ~il~NLl~NAik~t~~~-------~~~~~~~p~I~v~~~~~~~~~~i~V~D~G~GI~~~~~~~if~~f~~t~~~~---~~ 312 (482)
.+|.+|++||+.|.... .......+.+.|.+..+.+...|.|.|||+||+.+++...|....++.... ..
T Consensus 31 ifLrELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~i~~d~~~~~l~I~DnGiGMt~edl~~~l~tia~Sgtk~F~~kl 110 (269)
T 1qy5_A 31 IFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGTSEFLNKM 110 (269)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEEETTTTEEEEEECSCCCCHHHHHHHHHSCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhccCchhccCCCceEEEEEEcCCceEEEEEECCCCCCHHHHHHHhhhhcccccHHHHHhh
Confidence 47899999999997521 000011233555555555566899999999999999877765432210000 00
Q ss_pred CC------CCCCCCCCcccCHHHHHHHHH-----------------HhCCEEEEEee-----cCCcEEEEEEeeC
Q psy14548 313 SD------AHTVPLAGYGYGLPISRLYAR-----------------YFHGDIMLLSC-----DGLGTDAIIYLKA 359 (482)
Q Consensus 313 ~~------~~~~~~~G~GLGL~i~r~~~~-----------------~~gG~i~v~s~-----~g~Gt~f~i~lp~ 359 (482)
.. ......+..|+|++-+..++. ..||.+.+... .+.||++.+.|+.
T Consensus 111 ~~~~~~~~~d~~~IG~fGvGfySaf~va~~v~V~Sk~~~~~~~~w~s~gg~~~i~~~~~~~~~~~GT~I~L~Lk~ 185 (269)
T 1qy5_A 111 TEAQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDSNEFSVIADPRGNTLGRGTTITLVLKE 185 (269)
T ss_dssp HHHHHHTCCCHHHHHHTTCGGGGGGGTEEEEEEEEECTTSCCEEEEECSSCEEEEECTTCSCSSSEEEEEEEECG
T ss_pred hhcccccccchhhcCCccccHHHHhhccceEEEEEEecCCcEEEEEEeCCEEEEEeccCCCcCCCCeEEEEEEcc
Confidence 00 011122457899876655442 11244555533 3678888888764
No 41
>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A*
Probab=98.00 E-value=8.5e-06 Score=78.21 Aligned_cols=92 Identities=18% Similarity=0.204 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHhhhc-------CCCCCCCCCEEEEEEecCceeEEEEEEcCCCCChhhHhhhhhcccccCCCCC---C
Q psy14548 243 HMLFELFKNSMRATVEH-------HTDTDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVTDMLFHYMYSTAPQPS---K 312 (482)
Q Consensus 243 ~il~NLl~NAik~t~~~-------~~~~~~~p~I~v~~~~~~~~~~i~V~D~G~GI~~~~~~~if~~f~~t~~~~~---~ 312 (482)
.+|.+|++||+.+.... .......+.|.|.+...++.-.|.|.|||.||+++++...|..+.++..... .
T Consensus 71 ~~lrELI~NA~DA~ak~r~~~l~~~~~~~~~~~i~I~i~~d~~~~~I~I~DnG~GMs~edL~~~l~~ia~S~~~~f~~~l 150 (264)
T 1yc1_A 71 IFLRELISNSSDALDKIRYETLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEAL 150 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCGGGGGGCCCCCEEEEEETTTTEEEEEECSCCCCHHHHHHHHHSCTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhhhhccCccccCCCCeEEEEEEECCCeeEEEEEECCcCCCHHHHHHHHHhhccccchhhhhhh
Confidence 57899999999998620 0000001236666654444567999999999999999888776554321000 0
Q ss_pred -CCCCCCCCCCcccCHHHHHHHH
Q psy14548 313 -SDAHTVPLAGYGYGLPISRLYA 334 (482)
Q Consensus 313 -~~~~~~~~~G~GLGL~i~r~~~ 334 (482)
........+..|+|+.-+-.++
T Consensus 151 ~~~~d~~~iG~fGiGf~S~f~va 173 (264)
T 1yc1_A 151 QAGADISMIGQFGVGFYSAYLVA 173 (264)
T ss_dssp HTTCCGGGGGGGTCGGGGHHHHE
T ss_pred ccccchhhcCCCCCCccccccCC
Confidence 0001223456789988665544
No 42
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=97.96 E-value=1e-05 Score=82.03 Aligned_cols=83 Identities=17% Similarity=0.351 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCCCCCEEEEEEecCceeEEEEEEcCCCCChhh--------HhhhhhcccccCCCCCCC
Q psy14548 242 YHMLFELFKNSMRATVEHHTDTDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSV--------TDMLFHYMYSTAPQPSKS 313 (482)
Q Consensus 242 ~~il~NLl~NAik~t~~~~~~~~~~p~I~v~~~~~~~~~~i~V~D~G~GI~~~~--------~~~if~~f~~t~~~~~~~ 313 (482)
.+++.+|++||+.....++. ..|.|.+..++ .|+|.|||.|||.+. ++.+|..++.+... +
T Consensus 33 ~~lv~ElvdNsiD~a~~g~a-----~~I~V~i~~~g---~I~V~DnG~GIp~~~~~~~~~~~~e~v~~~lhagsKf---~ 101 (390)
T 1s16_A 33 NHLGQEVIDNSVDEALAGHA-----KRVDVILHADQ---SLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKF---S 101 (390)
T ss_dssp HHHHHHHHHHHHHHHHTTCC-----SEEEEEECTTS---CEEEEECSSCCCCSBCTTTCSBHHHHHHHCTTEESCS---S
T ss_pred HHHHHHHHHHHHHHHhcCCC-----CEEEEEEecCC---EEEEEECCCCcCcccccccCcchhhheeeeecccCCc---C
Confidence 67788888888887654422 23888886543 799999999999998 67889987776432 1
Q ss_pred CCCCCCCCC-cccCHHHHHHHHH
Q psy14548 314 DAHTVPLAG-YGYGLPISRLYAR 335 (482)
Q Consensus 314 ~~~~~~~~G-~GLGL~i~r~~~~ 335 (482)
+......+| .|.||+.+..+.+
T Consensus 102 ~~~~~~sgGl~GvGls~vnalS~ 124 (390)
T 1s16_A 102 NKNYQFSGGLHGVGISVVNALSK 124 (390)
T ss_dssp SSSCSSCSCCSSCHHHHHHHTEE
T ss_pred CCcccccCCccccchHHHHHhhc
Confidence 111122234 8999999998875
No 43
>2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli}
Probab=97.88 E-value=6.1e-06 Score=78.02 Aligned_cols=62 Identities=23% Similarity=0.180 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHhhhcC--------C-CCCCCCCEEEEEEecCceeEEEEEEcCCCCChhhHhhhhhcccc
Q psy14548 242 YHMLFELFKNSMRATVEHH--------T-DTDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVTDMLFHYMYS 305 (482)
Q Consensus 242 ~~il~NLl~NAik~t~~~~--------~-~~~~~p~I~v~~~~~~~~~~i~V~D~G~GI~~~~~~~if~~f~~ 305 (482)
..+|.||++||+.|..... . .......|.|.+. .+...|.|.|||.||+++++...|..+.+
T Consensus 49 ~~~lrELI~NA~DA~~~~r~~~~~~~~~~~~~~~~~I~i~~~--~~~~~i~I~DnG~GMs~edl~~~~~~ia~ 119 (235)
T 2ior_A 49 EIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFD--KDKRTLTISDNGVGMTRDEVIDHLGTIAK 119 (235)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHTSCGGGGTTCCCCCEEEEEE--TTTTEEEEEECSSCCCHHHHHHHHTTCCC
T ss_pred HHHHHHHHhCHHHHHHHHHhhhccCccccCCCceEEEEEEEc--CCceEEEEEECCCCCCHHHHHHHHHHHcc
Confidence 3688999999999984210 0 0001122555543 33346999999999999999988866654
No 44
>1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=97.83 E-value=2.5e-05 Score=79.21 Aligned_cols=86 Identities=21% Similarity=0.395 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCCCCCCEEEEEEecCceeEEEEEEcCCCCChhh--------HhhhhhcccccCCCCC
Q psy14548 240 HLYHMLFELFKNSMRATVEHHTDTDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSV--------TDMLFHYMYSTAPQPS 311 (482)
Q Consensus 240 ~L~~il~NLl~NAik~t~~~~~~~~~~p~I~v~~~~~~~~~~i~V~D~G~GI~~~~--------~~~if~~f~~t~~~~~ 311 (482)
-+.+++.+|++||+.....++. ..|.|.+..++ .|+|.|||.|||.+. .+.+|..+..+..-.
T Consensus 34 gl~~lv~ElvdNsiDea~~g~a-----~~I~V~i~~~g---~I~V~DnG~GIp~~~~~~~~~~~~elv~~~lhagsKf~- 104 (391)
T 1ei1_A 34 GLHHMVFEVVDNAIDEALAGHC-----KEIIVTIHADN---SVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKFD- 104 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCC-----CEEEEEECTTS---CEEEEECSSCCCCSBCTTTSSBHHHHHHHSTTEESCSS-
T ss_pred CHHHHHHHHHHhHHHHHhcCCC-----CEEEEEEeCCC---EEEEEECCCCcccCcccccCcchHHHhheeccccCCcC-
Confidence 6899999999999999766532 23888886543 799999999999998 455888666554311
Q ss_pred CCCCCCCCCCCcccCHHHHHHHHH
Q psy14548 312 KSDAHTVPLAGYGYGLPISRLYAR 335 (482)
Q Consensus 312 ~~~~~~~~~~G~GLGL~i~r~~~~ 335 (482)
++....+.+=.|.||+.+..+.+
T Consensus 105 -~~~~~vSgGl~GvGls~vnalS~ 127 (391)
T 1ei1_A 105 -DNSYKVSGGLHGVGVSVVNALSQ 127 (391)
T ss_dssp -SSSCSSCSCCSSCHHHHHHHTEE
T ss_pred -CCcccccCCccccchHHHHHhcC
Confidence 11122222338999999988775
No 45
>2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A*
Probab=97.72 E-value=8.4e-06 Score=77.09 Aligned_cols=65 Identities=18% Similarity=0.128 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHhhhc-------CCCCCCCCCEEEEEEecCceeEEEEEEcCCCCChhhHhhhhhccccc
Q psy14548 242 YHMLFELFKNSMRATVEH-------HTDTDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVTDMLFHYMYST 306 (482)
Q Consensus 242 ~~il~NLl~NAik~t~~~-------~~~~~~~p~I~v~~~~~~~~~~i~V~D~G~GI~~~~~~~if~~f~~t 306 (482)
..+|.+|++||+.|.... .......+.+.|.+..+.+.-.|.|.|||.||+++++...|....++
T Consensus 34 ~~~lrELI~NA~DA~ak~~~~~~~~~~~~~~~~~~~I~i~~d~~~~~i~I~DnG~GMt~edl~~~l~~ia~S 105 (236)
T 2gqp_A 34 EIFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKS 105 (236)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHCTTTTTTCCCCCEEEEEETTTTEEEEEECSCCCCHHHHHHHHHCC---
T ss_pred hHHHHHHHHhHHHhhhhhhhhcccCcccccCCCceEEEEEEcCCCCEEEEEECCcCCCHHHHHHHHhhhccc
Confidence 367899999999997521 00000112234444433444578999999999999998888766543
No 46
>3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo sapiens} SCOP: d.122.1.1 PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A* 1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* ...
Probab=97.68 E-value=2.6e-05 Score=73.17 Aligned_cols=92 Identities=17% Similarity=0.192 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHhhhcC-------CCCCCCCCEEEEEEecCceeEEEEEEcCCCCChhhHhhhhhcccccCCCCC---
Q psy14548 242 YHMLFELFKNSMRATVEHH-------TDTDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVTDMLFHYMYSTAPQPS--- 311 (482)
Q Consensus 242 ~~il~NLl~NAik~t~~~~-------~~~~~~p~I~v~~~~~~~~~~i~V~D~G~GI~~~~~~~if~~f~~t~~~~~--- 311 (482)
..+|.+|++||+.+..... ......+.+.|.+..+.+.-.|.|.|||.||+++++...|....+++....
T Consensus 34 ~~~lrELi~NA~DA~~k~r~~~~~~~~~~~~~~~i~I~I~~d~~~~~i~V~DnG~GMs~edl~~~l~~ia~S~~~~f~~~ 113 (228)
T 3t0h_A 34 EIFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEA 113 (228)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHTTCGGGGTTCCCCCEEEEEETTTTEEEEEECSCCCCHHHHHTGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHHHCHHHHHHHHHhhhccCcccccCCCceEEEEEEeCCeeEEEEEeCCCCCCHHHHHHHHHhhccccchhhhhh
Confidence 3668899999999975310 000112336666655555667899999999999999877755433210000
Q ss_pred C-CCCCCCCCCCcccCHHHHHHH
Q psy14548 312 K-SDAHTVPLAGYGYGLPISRLY 333 (482)
Q Consensus 312 ~-~~~~~~~~~G~GLGL~i~r~~ 333 (482)
. +.......+-.|+||+-+-.+
T Consensus 114 l~~~~~~~~iG~fG~G~~S~~~v 136 (228)
T 3t0h_A 114 LQAGADISMIGQFGVGFYSAYLV 136 (228)
T ss_dssp HHTTCCGGGGGGGTCGGGGGGGT
T ss_pred hcccCCcccCCCCChhHHHHhcc
Confidence 0 001223446678998766443
No 47
>4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A*
Probab=97.65 E-value=7.7e-05 Score=69.52 Aligned_cols=105 Identities=19% Similarity=0.315 Sum_probs=64.5
Q ss_pred hHHHHHHHHHHHHHHHHhhhcCCCCCCCCCEEEEEEecCceeEEEEEEcCCCCChhhH--------hhhhhcccccCCCC
Q psy14548 239 SHLYHMLFELFKNSMRATVEHHTDTDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVT--------DMLFHYMYSTAPQP 310 (482)
Q Consensus 239 ~~L~~il~NLl~NAik~t~~~~~~~~~~p~I~v~~~~~~~~~~i~V~D~G~GI~~~~~--------~~if~~f~~t~~~~ 310 (482)
.-|..++.+|++||+.....++. ..|.|.+..++ .|+|+|||.|||.+.. +-+|.....+...
T Consensus 34 ~gl~~lv~ElvdNsiDea~~g~~-----~~I~V~i~~~g---~i~V~DnGrGIp~~~~~~~~~~~~e~i~t~lhag~Kf- 104 (220)
T 4duh_A 34 TGLHHMVFEVVDNAIDEALAGHC-----KEIIVTIHADN---SVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGGKF- 104 (220)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCC-----CEEEEEECTTS---CEEEEECSSCCCCSEETTTTEEHHHHHHHSTTCSSCC-
T ss_pred ccHHHHHHHHHHHHHHHHhcCCC-----CEEEEEEeCCC---cEEEEECCcCcccccccccCcchhhheeeecccCCCc-
Confidence 57899999999999999776543 23888876532 6999999999999874 4456444433221
Q ss_pred CCCCCCCCCCCCcccCHHHHHHHHHHhCCEEEEEeecCCcEEEEEEee
Q psy14548 311 SKSDAHTVPLAGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLK 358 (482)
Q Consensus 311 ~~~~~~~~~~~G~GLGL~i~r~~~~~~gG~i~v~s~~g~Gt~f~i~lp 358 (482)
.+.+.....+=.|.|++.+..+.+. +.+++.. .|..+...+-
T Consensus 105 -d~~~yk~SgGlhGvG~svvNAlS~~----l~v~v~r-~g~~~~~~f~ 146 (220)
T 4duh_A 105 -DDNSYKVSGGLHGVGVSVVNALSQK----LELVIQR-EGKIHRQIYE 146 (220)
T ss_dssp -CTTC--------CCCHHHHHHTEEE----EEEEEEE-TTEEEEEEEE
T ss_pred -CCCccccccCccceecchhcccccc----eEEEEEE-CCEEEEEEec
Confidence 1111122223479999999887653 4444432 3455555553
No 48
>3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A*
Probab=97.62 E-value=2.4e-05 Score=74.27 Aligned_cols=92 Identities=18% Similarity=0.211 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHhhhcC-------CCCCCCCCEEEEEEecCceeEEEEEEcCCCCChhhHhhhhhcccccCCCCC---C
Q psy14548 243 HMLFELFKNSMRATVEHH-------TDTDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVTDMLFHYMYSTAPQPS---K 312 (482)
Q Consensus 243 ~il~NLl~NAik~t~~~~-------~~~~~~p~I~v~~~~~~~~~~i~V~D~G~GI~~~~~~~if~~f~~t~~~~~---~ 312 (482)
.+|.+|++||..+..... ......+.+.|.+..+.+.-.|.|.|||.||+++++...|....+++.... +
T Consensus 63 iflRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~I~I~DnG~GMt~edl~~~l~~ia~S~~~~f~~~L 142 (256)
T 3o0i_A 63 IFLRELISNSSDALDKIRYESLTDPSKLDSGKELHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSGTKAFMEAL 142 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEEETTTTEEEEEECSCCCCHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhChHHHHHHHHHHhccCchhccCCCceEEEEEEcCCceEEEEecCCCCcCHHHHHHHHHhhccccccchhhhh
Confidence 678899999999975310 000112335666655555667999999999999998766654322110000 0
Q ss_pred -CCCCCCCCCCcccCHHHHHHHH
Q psy14548 313 -SDAHTVPLAGYGYGLPISRLYA 334 (482)
Q Consensus 313 -~~~~~~~~~G~GLGL~i~r~~~ 334 (482)
+.......+-.|+||+-+-.++
T Consensus 143 ~~~~~~~~iG~fG~Gf~S~f~Va 165 (256)
T 3o0i_A 143 QAGADISMIGQFGVGFYSAYLVA 165 (256)
T ss_dssp HTTCCGGGGGGGTCGGGGGGGTE
T ss_pred cccCCccccCCCcchHHHhhccC
Confidence 0012234566789988765544
No 49
>4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A*
Probab=97.54 E-value=0.00014 Score=67.92 Aligned_cols=106 Identities=13% Similarity=0.256 Sum_probs=65.5
Q ss_pred hhHHHHHHHHHHHHHHHHhhhcCCCCCCCCCEEEEEEecCceeEEEEEEcCCCCChhh-------HhhhhhcccccCCCC
Q psy14548 238 PSHLYHMLFELFKNSMRATVEHHTDTDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSV-------TDMLFHYMYSTAPQP 310 (482)
Q Consensus 238 ~~~L~~il~NLl~NAik~t~~~~~~~~~~p~I~v~~~~~~~~~~i~V~D~G~GI~~~~-------~~~if~~f~~t~~~~ 310 (482)
..-|.+++.++++||+.....++. ..|.|.+..++ .|+|.|+|.|||.+. .+-+|.....+...
T Consensus 38 ~~gl~~~v~Eiv~NaiD~~~~g~~-----~~I~V~i~~~g---~i~V~DnG~GIp~~~h~~~~~~~e~v~t~lhag~Kf- 108 (226)
T 4emv_A 38 GAGLHHLVWEIVDNAVDEALSGFG-----DRIDVTINKDG---SLTVQDHGRGMPTGMHAMGIPTVEVIFTILHAGGKF- 108 (226)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCC-----SEEEEEECTTS---CEEEEECSSCCCCSBCGGGCBHHHHHHHCBC------
T ss_pred cccHHHHHHHHHHHHHHHHhcCCC-----cEEEEEEeCCC---eEEEEEcCCCccccccccCceehheeEEeecccCcc-
Confidence 457899999999999999766543 23777775432 699999999999998 66677654443321
Q ss_pred CCCCCCCCCCCCcccCHHHHHHHHHHhCCEEEEEeecCCcEEEEEEee
Q psy14548 311 SKSDAHTVPLAGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLK 358 (482)
Q Consensus 311 ~~~~~~~~~~~G~GLGL~i~r~~~~~~gG~i~v~s~~g~Gt~f~i~lp 358 (482)
.+.+.....+-.|.|++.+..+.+. +.+.+.. .|..+...+-
T Consensus 109 -d~~~yk~SgGlhGvG~svvNALS~~----l~v~v~r-~g~~~~q~f~ 150 (226)
T 4emv_A 109 -GQGGYKTSGGLHGVGSSVVNALSSW----LEVEITR-DGAVYKQRFE 150 (226)
T ss_dssp ----------CGGGCCHHHHHHTEEE----EEEEEEE-TTEEEEEEEE
T ss_pred -CccceEeccccccccchhhhhcccc----eEEEEEe-CCcEEEEEEC
Confidence 1111222334479999998887543 4444432 3455555553
No 50
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A*
Probab=97.52 E-value=3.5e-05 Score=78.23 Aligned_cols=52 Identities=38% Similarity=0.791 Sum_probs=44.3
Q ss_pred CCcccCCCCcccchhhhhcccCCceeEEecccccccEEEEecccCcccccccc
Q psy14548 419 TVPLAGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLKALSNEANELLP 471 (482)
Q Consensus 419 ~~pla~~g~glp~~~~~a~~~~~~~~~~~~~g~g~d~~~~~~~~~~~~~~~~~ 471 (482)
..+.+|.|+||++++.|++++||++.+.|.+|+|++++++|++.++. .++.|
T Consensus 330 ~~~~~G~GLGL~i~r~i~~~~gG~i~v~s~~g~Gt~f~i~LP~~~~~-~~~~~ 381 (388)
T 1gkz_A 330 SGPMHGFGFGLPTSRAYAEYLGGSLQLQSLQGIGTDVYLRLRHIDGR-EESFR 381 (388)
T ss_dssp --CCSCSSCHHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEECSSSC-CC---
T ss_pred CCCcCCccCCHHHHHHHHHHhCCEEEEEecCCCcEEEEEEecCCCCC-CCCCC
Confidence 45778999999999999999999999999999999999999999877 44444
No 51
>3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A*
Probab=97.51 E-value=9.1e-05 Score=68.14 Aligned_cols=100 Identities=14% Similarity=0.239 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCCCCCEEEEEEecCceeEEEEEEcCCCCChhhH--------hhhh-hcccccCCCCCC
Q psy14548 242 YHMLFELFKNSMRATVEHHTDTDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVT--------DMLF-HYMYSTAPQPSK 312 (482)
Q Consensus 242 ~~il~NLl~NAik~t~~~~~~~~~~p~I~v~~~~~~~~~~i~V~D~G~GI~~~~~--------~~if-~~f~~t~~~~~~ 312 (482)
..++.+|++||+.+...++. ..|.|.+..++ .|+|+|||.|||.++. +.+| ....+++-.
T Consensus 19 ~~~v~Elv~NsiDa~~~g~a-----~~I~V~i~~~g---~i~V~DnG~GIp~~~~~~~~~~~~e~i~~~~hatsK~~--- 87 (201)
T 3fv5_A 19 NHLGQEVIDNSVDEALAGHA-----KRVDVILHADQ---SLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFS--- 87 (201)
T ss_dssp HHHHHHHHHHHHHHHHTTCC-----SEEEEEECTTS---CEEEEECSSCCCCSBCTTCSSBHHHHHHHCC----------
T ss_pred hhhhHHHHHHHHHHHhcCCC-----cEEEEEEeCCC---EEEEEECCCCcCcccccccCcchhheeeeeeccccCcC---
Confidence 78999999999999765422 22888875432 7999999999999884 4443 444333211
Q ss_pred CCCCCCCCCCcccCHHHHHHHHHHhCCEEEEEeecCCcEEEEEEe
Q psy14548 313 SDAHTVPLAGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYL 357 (482)
Q Consensus 313 ~~~~~~~~~G~GLGL~i~r~~~~~~gG~i~v~s~~g~Gt~f~i~l 357 (482)
++......+=.|.||+.+..+.+ .+.+.+..+ |..+.+.+
T Consensus 88 ~~~~~~s~GfrGeglssinalS~----~l~v~t~~~-g~~~~~~~ 127 (201)
T 3fv5_A 88 NKNYQFSGGLHGVGISVVNALSK----RVEVNVRRD-GQVYNIAF 127 (201)
T ss_dssp --------------CHHHHHTEE----EEEEEEEET-TEEEEEEE
T ss_pred CCcccccCcccceecchhhcccc----eEEEEEEec-CceEEEEE
Confidence 11111223336899998887653 345544432 33344444
No 52
>3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A*
Probab=97.47 E-value=0.00014 Score=69.89 Aligned_cols=92 Identities=18% Similarity=0.177 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHhhhcC-------CCCCCCCCEEEEEEecCceeEEEEEEcCCCCChhhHhhhhhcccccCCCC----
Q psy14548 242 YHMLFELFKNSMRATVEHH-------TDTDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVTDMLFHYMYSTAPQP---- 310 (482)
Q Consensus 242 ~~il~NLl~NAik~t~~~~-------~~~~~~p~I~v~~~~~~~~~~i~V~D~G~GI~~~~~~~if~~f~~t~~~~---- 310 (482)
...|.+|++||..|...-. ......+.+.|.+..+.+.-+|.|.|||+||+++++..-+...-++....
T Consensus 48 ~ifLRELIsNA~DA~~k~r~~~l~d~~~~~~~~~l~I~I~~d~~~~tLtI~DNGiGMt~edL~~~LgtIa~Sgtk~f~e~ 127 (281)
T 3peh_A 48 EVFLRELISNAADALEKIRFLSLSDESVLGEEKKLEIRISANKEKNILSITDTGIGMTKVDLINNLGTIAKSGTSNFLEA 127 (281)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHTTCGGGGTTCCCCCEEEEEETTTTEEEEEECSCCCCHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHhcCCchhccCCCceEEEEEEcCCCcEEEEEeCCCCCCHHHHHHHHHHHHhHhhhhHHHh
Confidence 3567899999999975210 00011233455554444456789999999999999875443221110000
Q ss_pred -CCCCCCCCCCCCcccCHHHHHHH
Q psy14548 311 -SKSDAHTVPLAGYGYGLPISRLY 333 (482)
Q Consensus 311 -~~~~~~~~~~~G~GLGL~i~r~~ 333 (482)
..+.......+..|+|++-+-.+
T Consensus 128 l~~~~~d~~~IGqFGVGFySaf~v 151 (281)
T 3peh_A 128 ISKSGGDMSLIGQFGVGFYSAFLV 151 (281)
T ss_dssp HHHTTCCSTTTTTTTCGGGGGGGT
T ss_pred hhccccccccccccCccchhhccc
Confidence 00001223456788998665444
No 53
>1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A*
Probab=97.44 E-value=0.00037 Score=70.67 Aligned_cols=89 Identities=18% Similarity=0.346 Sum_probs=60.1
Q ss_pred hhHHHHHHHHHHHHHHHHhhh-cCCCCCCCCCEEEEEEecCceeEEEEEEcCCCCChhh--------HhhhhhcccccCC
Q psy14548 238 PSHLYHMLFELFKNSMRATVE-HHTDTDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSV--------TDMLFHYMYSTAP 308 (482)
Q Consensus 238 ~~~L~~il~NLl~NAik~t~~-~~~~~~~~p~I~v~~~~~~~~~~i~V~D~G~GI~~~~--------~~~if~~f~~t~~ 308 (482)
..-|.+++.+|++||+..... +.. ..|.|.+..++ -.|+|.|||.|||.+. .+.+|.....+..
T Consensus 50 ~~GL~~lv~EivdNsiDe~~~~g~~-----~~I~V~i~~~~--~~I~V~DnGrGIPv~~h~~~~~~~~e~v~t~lhagsK 122 (400)
T 1zxm_A 50 VPGLYKIFDEILVNAADNKQRDPKM-----SCIRVTIDPEN--NLISIWNNGKGIPVVEHKVEKMYVPALIFGQLLTSSN 122 (400)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCTTC-----CEEEEEEETTT--TEEEEEEESSCCCCSEETTTTEEHHHHHHHSSSEESC
T ss_pred cchHHHHHHHHHhhHHhHHhhcCCC-----ceEEEEEECCC--CEEEEEECCCcccCccccccCccchhheeeeecccCC
Confidence 347999999999999999843 322 23888887654 3789999999999987 5557764433322
Q ss_pred CCCCCCCCCCCCCCcccCHHHHHHHHH
Q psy14548 309 QPSKSDAHTVPLAGYGYGLPISRLYAR 335 (482)
Q Consensus 309 ~~~~~~~~~~~~~G~GLGL~i~r~~~~ 335 (482)
- .++......+-.|.|++.+..+.+
T Consensus 123 f--~~~~ykvSgGlhGvGlsvVnAlS~ 147 (400)
T 1zxm_A 123 Y--DDDEKKVTGGRNGYGAKLCNIFST 147 (400)
T ss_dssp C--CGGGCCCCSCCSSCHHHHHHHTEE
T ss_pred C--CCCcccccCCccccceeeeEEecc
Confidence 1 011122233447999999988743
No 54
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A
Probab=97.41 E-value=0.00046 Score=72.81 Aligned_cols=116 Identities=17% Similarity=0.189 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHHhhhcC---------CCCCCCCCEEEEEEecCceeEEEEEEcCCCCChhhHhhhhhcccccCCCCC-
Q psy14548 242 YHMLFELFKNSMRATVEHH---------TDTDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVTDMLFHYMYSTAPQPS- 311 (482)
Q Consensus 242 ~~il~NLl~NAik~t~~~~---------~~~~~~p~I~v~~~~~~~~~~i~V~D~G~GI~~~~~~~if~~f~~t~~~~~- 311 (482)
..+|.+|++||+.|...-. ........|.|.+..+ .-+|+|.|||+||+++++..-|....++....-
T Consensus 29 ~ifLrELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~--~~~I~I~DnGiGMt~edl~~~l~tiA~Sg~~~f~ 106 (559)
T 1y4s_A 29 EIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKD--KRTLTISDNGVGMTRDEVIDHLGTIAKSGTKSFL 106 (559)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHCGGGGCSCCCCCEEEEEETT--TTEEEEEECSSCCCHHHHHHHHSCCSCCCCCCTT
T ss_pred HHHHHHHHHHHHHHhHhHHHhhccCchhccCCCccEEEEEEeCC--CcEEEEEECCCCCCHHHHHHHHhhhcccccHHHH
Confidence 3678999999999983100 0001112366665433 357899999999999998887766544321100
Q ss_pred --CC---CCCCCCCCCcccCHHHHHHHHH-------Hh--------------CCEEEEEe--ecCCcEEEEEEeeC
Q psy14548 312 --KS---DAHTVPLAGYGYGLPISRLYAR-------YF--------------HGDIMLLS--CDGLGTDAIIYLKA 359 (482)
Q Consensus 312 --~~---~~~~~~~~G~GLGL~i~r~~~~-------~~--------------gG~i~v~s--~~g~Gt~f~i~lp~ 359 (482)
.. .......+..|+|++-+-.+++ .. ||...+.. ..+.||++.++|..
T Consensus 107 e~l~~~~~~~~~~iG~fGvGfyS~f~VadkV~V~Sr~~~~~~~~~~~w~s~g~~~~~i~~~~~~~~GT~I~L~Lk~ 182 (559)
T 1y4s_A 107 ESLGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGEGEYTVADITKEDRGTEITLHLRE 182 (559)
T ss_dssp CC--------CCCCSSCCCSGGGHHHHEEEEEEEEECSSSCGGGEEEEEECSSSEEEEEEECCCSCEEEEEEEECT
T ss_pred HHhhccccccccccCCCCcchhhhhhccCeEEEEEcCCCCCCCeeEEEEEeCCCeeEEeECCCCCCCeEEEEEEcc
Confidence 00 1123345678999876665542 11 23344442 23678988888763
No 55
>3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone inhibitor complex; HET: 7PP; 2.20A {Homo sapiens} SCOP: d.122.1.1
Probab=97.37 E-value=0.00012 Score=68.75 Aligned_cols=93 Identities=16% Similarity=0.172 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHhhhcC-------CCCCCCCCEEEEEEecCceeEEEEEEcCCCCChhhHhhhhhcc-cccCCCC---
Q psy14548 242 YHMLFELFKNSMRATVEHH-------TDTDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVTDMLFHYM-YSTAPQP--- 310 (482)
Q Consensus 242 ~~il~NLl~NAik~t~~~~-------~~~~~~p~I~v~~~~~~~~~~i~V~D~G~GI~~~~~~~if~~f-~~t~~~~--- 310 (482)
...|.+|++||..|...-. ......+.+.|.+..+.+.-.|.|.|||+||+++++..-+... +++....
T Consensus 41 ~ifLRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~I~~d~~~~~L~I~DnGiGMt~edL~~~LgtIA~Sgtk~f~e~ 120 (239)
T 3nmq_A 41 EIFLRELISNASDALDKIRYESLTDPSKLDSGKELKIDIIPNPQERTLTLVDTGIGMTKADLINNLGTIAKSGTKAFMEA 120 (239)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHCGGGGTTCCCCCEEEEEETTTTEEEEEECSCCCCHHHHHTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHhccCchhccCCCceEEEEEEeCCccEEEEEeCCCCCCHHHHHHHHHHHhcccchhhhhh
Confidence 3678899999999975311 0001123355555555556678999999999999985433221 1100000
Q ss_pred CCCCCCCCCCCCcccCHHHHHHHH
Q psy14548 311 SKSDAHTVPLAGYGYGLPISRLYA 334 (482)
Q Consensus 311 ~~~~~~~~~~~G~GLGL~i~r~~~ 334 (482)
..+.......+..|+|++-+-.++
T Consensus 121 ~~~~~d~~~IGqFGvGfySaf~va 144 (239)
T 3nmq_A 121 LQAGADISMIGQFGVGFYSAYLVA 144 (239)
T ss_dssp HHTTCCGGGGGGGTCGGGGGGGTE
T ss_pred hcccCCcccccccCcccccccccC
Confidence 000012234467899987765544
No 56
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae}
Probab=97.34 E-value=0.00042 Score=74.43 Aligned_cols=115 Identities=18% Similarity=0.166 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHhhhc-------CCCCCCC--CCEEEEEEecCceeEEEEEEcCCCCChhhHhhhhhcccccCCCC---
Q psy14548 243 HMLFELFKNSMRATVEH-------HTDTDVL--PPIEVSVVRGKEDICVKMSDKGGGIPRSVTDMLFHYMYSTAPQP--- 310 (482)
Q Consensus 243 ~il~NLl~NAik~t~~~-------~~~~~~~--p~I~v~~~~~~~~~~i~V~D~G~GI~~~~~~~if~~f~~t~~~~--- 310 (482)
.+|.+|++||+.|.... ....... ..|.|.+. .+.-+|+|.|||+||+.+++..-|...-++....
T Consensus 29 ifLRELIsNA~DA~~k~r~~~ltd~~~~~~~~~~~I~I~~d--~~~~~I~I~DnGiGMt~edl~~~l~tIA~Sgt~~f~~ 106 (677)
T 2cg9_A 29 IFLRELISNASDALDKIRYKSLSDPKQLETEPDLFIRITPK--PEQKVLEIRDSGIGMTKAELINNLGTIAKSGTKAFME 106 (677)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSCTTTTTTCCCCCEEEEEE--GGGTEEEEEECSCCCCHHHHHGGGSSSSSCTTHHHHS
T ss_pred HHHHHHhhCHHHHHHHHHHHhccChhhccCCCCcEEEEEEe--CCCCEEEEEECCCCCCHHHHHHHHHhHhccccHHHHH
Confidence 47899999999998421 0000111 23555554 3345799999999999999877665432221000
Q ss_pred CC-CCCCCCCCCCcccCHHHHHHHHH------------------HhCCEEEEEe-----ecCCcEEEEEEeeC
Q psy14548 311 SK-SDAHTVPLAGYGYGLPISRLYAR------------------YFHGDIMLLS-----CDGLGTDAIIYLKA 359 (482)
Q Consensus 311 ~~-~~~~~~~~~G~GLGL~i~r~~~~------------------~~gG~i~v~s-----~~g~Gt~f~i~lp~ 359 (482)
.. +.......+..|+|+.-+-.+++ .-||...+.. ..+.||++.+.|..
T Consensus 107 kl~~~~d~~~IGqFGvGFySaf~vadkV~V~Sk~~~~~~~~W~s~g~~~~ti~~~~~~~~~~~GT~I~L~Lk~ 179 (677)
T 2cg9_A 107 ALSAGADVSMIGQFGVGFYSLFLVADRVQVISKSNDDEQYIWESNAGGSFTVTLDEVNERIGRGTILRLFLKD 179 (677)
T ss_dssp CCCSSCCCCCCCCTTCTTGGGGGTEEEEEEEEECTTSCEEEEEECSSSEEEEEECCSSCCCSSEEEEEEEECT
T ss_pred hhhcccchhhcCCCCchhHHHhhcCcEEEEEEccCCCceEEEEEcCCceEEEeecCCCCCCCCCeEEEEEEcc
Confidence 00 01122345667888764432221 0134555554 23679999998865
No 57
>3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, B-subunit binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus}
Probab=97.16 E-value=0.00051 Score=69.06 Aligned_cols=84 Identities=8% Similarity=0.031 Sum_probs=53.9
Q ss_pred chhHHHHHHHHHHHHHHHHhhhcCCCCCCCCCEEEEEEecCceeEEEEEEcCCCCChhhHhhhhhcccccCCCCCCCCCC
Q psy14548 237 VPSHLYHMLFELFKNSMRATVEHHTDTDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVTDMLFHYMYSTAPQPSKSDAH 316 (482)
Q Consensus 237 d~~~L~~il~NLl~NAik~t~~~~~~~~~~p~I~v~~~~~~~~~~i~V~D~G~GI~~~~~~~if~~f~~t~~~~~~~~~~ 316 (482)
++.-|..++.+|++||+.....++. ..|.|++..++ .|+|+|||.|||. +.+|....+++ -...+...
T Consensus 27 ~~~gl~~~v~ElvdNsiDe~~~g~a-----~~I~V~i~~~g---~I~V~DnGrGIp~---e~v~~lhagsK-f~~~~~~~ 94 (369)
T 3cwv_A 27 GEYGLHHLVYFLLDVAYEEARRGEC-----RDVVLEVGGDG---SIALFCTSRTVTA---ENLVRVATGAG-FLGRPPGD 94 (369)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTTCC-----SEEEEEECTTS---CEEEEEEESSCCH---HHHHHHHTTTT-GGGSSCCC
T ss_pred CCchHHHHHHHHHhhhHhHHhhCCC-----CEEEEEEeCCC---EEEEEECCCCcCH---hHeeeeecCCC-cCCCcccc
Confidence 3468999999999999998766543 23888886543 7999999999999 56663333322 10000001
Q ss_pred CCCCCCcccCHHHHHHHHH
Q psy14548 317 TVPLAGYGYGLPISRLYAR 335 (482)
Q Consensus 317 ~~~~~G~GLGL~i~r~~~~ 335 (482)
..... | |++.+..+.+
T Consensus 95 ~y~vs--G-Gls~vnalSs 110 (369)
T 3cwv_A 95 GWGWD--S-MLVVSLALSS 110 (369)
T ss_dssp STTTT--S-SHHHHHHTEE
T ss_pred ccccc--C-HHHHHHHhhc
Confidence 11222 4 8888877643
No 58
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A
Probab=97.15 E-value=0.00021 Score=76.81 Aligned_cols=121 Identities=17% Similarity=0.165 Sum_probs=61.9
Q ss_pred EEechhHHHHHHHHHHHHHHHHhhhcC-------CCCCCC--CCEEEEEEecCceeEEEEEEcCCCCChhhHhhhhhccc
Q psy14548 234 IIYVPSHLYHMLFELFKNSMRATVEHH-------TDTDVL--PPIEVSVVRGKEDICVKMSDKGGGIPRSVTDMLFHYMY 304 (482)
Q Consensus 234 v~~d~~~L~~il~NLl~NAik~t~~~~-------~~~~~~--p~I~v~~~~~~~~~~i~V~D~G~GI~~~~~~~if~~f~ 304 (482)
++.++. .+|.+|++||+.+...-. ...... ..|.|.+. .+.-+|+|.|||+||+.+++..-|...-
T Consensus 42 LYsn~e---ifLRELIsNA~DA~dk~r~~~l~~~~~~~~a~~~~I~I~~d--~~~~~I~I~DnGiGMt~edl~~~l~tIA 116 (666)
T 2o1u_A 42 LYKNKE---IFLRELISNASDALDKIRLISLTDENALAGNEELTVKIKCD--KEKNLLHVTDTGVGMTREELVKNLGTIA 116 (666)
T ss_dssp TSSSCT---THHHHHHHHHHHHHHHHHHHTTSCTTSSSSCCCCCEEEEEE--TTTTEEEEEECSCCCCHHHHHHHTTC--
T ss_pred ccCCch---HHHHHHHhhHHHHHHHHHHHhccCchhccCCCccEEEEEEe--CCCCEEEEEECCCCCCHHHHHHHHhhhc
Confidence 445553 678999999999983210 000011 23555554 3335789999999999999887775543
Q ss_pred ccCCCC---CCCC------CCCCCCCCcccCHHHHHHHHH-----------------HhCCEEEEEee-----cCCcEEE
Q psy14548 305 STAPQP---SKSD------AHTVPLAGYGYGLPISRLYAR-----------------YFHGDIMLLSC-----DGLGTDA 353 (482)
Q Consensus 305 ~t~~~~---~~~~------~~~~~~~G~GLGL~i~r~~~~-----------------~~gG~i~v~s~-----~g~Gt~f 353 (482)
++.... .... ......+..|+|..-+-.+++ .-||.+.+... .+.||++
T Consensus 117 ~SGtk~f~~kl~~~~~~~~~d~~~IGqFGvGfySaf~vAdkV~V~Sr~~~~~~~~W~s~gg~~ti~~~~~~~~~~~GT~I 196 (666)
T 2o1u_A 117 KSGTSEFLNKMTEAQEDGQSTSELIGQFGVGFYSAFLVADKVIVTSKHNNDTQHIWESDSNEFSVIADPRGNTLGRGTTI 196 (666)
T ss_dssp -----------------------------CTTGGGGGTEEEEEEEEECTTSCCEEEEESSSCCEEEECTTCCSSSSEEEE
T ss_pred ccccHHHHHHhhhcccccccchhhccCCCcHHHhHHHhcCEEEEEEeeCCCceEEEEEeCCeEEEEecccCCCCCCCeEE
Confidence 321100 0000 112234667888765433321 11245555543 3579999
Q ss_pred EEEeeC
Q psy14548 354 IIYLKA 359 (482)
Q Consensus 354 ~i~lp~ 359 (482)
.+.|..
T Consensus 197 ~L~Lk~ 202 (666)
T 2o1u_A 197 TLVLKE 202 (666)
T ss_dssp EEEECT
T ss_pred EEEEcc
Confidence 888764
No 59
>3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB: 3lps_A*
Probab=97.03 E-value=0.00073 Score=68.48 Aligned_cols=85 Identities=19% Similarity=0.336 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCCCCCEEEEEEecCceeEEEEEEcCCCCChhhH--------hhhhhcccccCCCCCCC
Q psy14548 242 YHMLFELFKNSMRATVEHHTDTDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVT--------DMLFHYMYSTAPQPSKS 313 (482)
Q Consensus 242 ~~il~NLl~NAik~t~~~~~~~~~~p~I~v~~~~~~~~~~i~V~D~G~GI~~~~~--------~~if~~f~~t~~~~~~~ 313 (482)
.+++.++++||+.....++. ..|.|++..++ .|+|+|+|.|||.+.. +-+|.....+... .+
T Consensus 52 ~hlv~EivdNsiDea~ag~~-----~~I~V~i~~dg---sI~V~DnGrGIPv~~h~~~~~~~~e~i~t~lhaggKf--d~ 121 (408)
T 3lnu_A 52 NHLAQEVIDNSVDEALAGHA-----KQIEVTLYKDG---SCEVSDDGRGMPVDIHPEEKIPGVELILTRLHAGGKF--NN 121 (408)
T ss_dssp HHHHHHHHHHHHHHHHTTSC-----CEEEEEECTTS---CEEEEECSSCCCCSBCTTTCSBHHHHHHHCC----------
T ss_pred chhhHHHHHHHHHHhhcCCC-----ceEEEEEeCCC---eEEEEEcCCCCCcccccccCCcchheEEEecccCCCc--CC
Confidence 78999999999998776653 23888875432 6999999999999874 4556444433221 01
Q ss_pred CCCCCCCCCcccCHHHHHHHHHH
Q psy14548 314 DAHTVPLAGYGYGLPISRLYARY 336 (482)
Q Consensus 314 ~~~~~~~~G~GLGL~i~r~~~~~ 336 (482)
.+.....+-.|.|++.+..+.+.
T Consensus 122 ~~ykvSgGlhGvG~svVNALS~~ 144 (408)
T 3lnu_A 122 RNYTFSGGLHGVGVSVVNALSTK 144 (408)
T ss_dssp ------------CHHHHHHTEEE
T ss_pred CceeecCCccccccceehhccCe
Confidence 11112223379999999887644
No 60
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A
Probab=96.98 E-value=0.00037 Score=74.46 Aligned_cols=91 Identities=18% Similarity=0.150 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHhhhc-------CCCC--CCCCCEEEEEEecCceeEEEEEEcCCCCChhhHhhhhhcccccCCCCC-
Q psy14548 242 YHMLFELFKNSMRATVEH-------HTDT--DVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVTDMLFHYMYSTAPQPS- 311 (482)
Q Consensus 242 ~~il~NLl~NAik~t~~~-------~~~~--~~~p~I~v~~~~~~~~~~i~V~D~G~GI~~~~~~~if~~f~~t~~~~~- 311 (482)
..+|.+|++||+.|.... .... .....|.|.+.. +.-+|+|.|||+||+.+++..-|....++....-
T Consensus 29 ~ifLrELIsNA~DA~~k~r~~~l~~~~~~~~a~~~~I~I~~d~--~~~~I~I~DnGiGMt~edl~~~l~tiA~Sg~~~f~ 106 (624)
T 2ioq_A 29 EIFLRELISNASDAADKLRFRALSNPDLYEGDGELRVRVSFDK--DKRTLTISDNGVGMTRDEVIDHLGTIAKSGTKSFL 106 (624)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHTSTTTTTTCCCCCEEEEEET--TTTEEEEEECSCCCCHHHHHHHHHHHCC-------
T ss_pred HHHHHHHHHHHHHhhhhhHHhhccCcccccCCCCcEEEEEEeC--CCcEEEEEECCCCCCHHHHHHHHHhhcccccHHHH
Confidence 367899999999997320 0000 111236666543 3357899999999999998877765543321100
Q ss_pred --CC---CCCCCCCCCcccCHHHHHHHH
Q psy14548 312 --KS---DAHTVPLAGYGYGLPISRLYA 334 (482)
Q Consensus 312 --~~---~~~~~~~~G~GLGL~i~r~~~ 334 (482)
.. .......+..|+|++-+-.++
T Consensus 107 ~~l~~~~~~~~~~iG~fGvGfyS~f~Va 134 (624)
T 2ioq_A 107 ESLGSDQAKDSQLIGQFGVGFYSAFIVA 134 (624)
T ss_dssp --------CCTTHHHHHHHHHHHHHHHE
T ss_pred HHhcccccccccccCCCCccHHHHHhcC
Confidence 00 011222345689988776665
No 61
>1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A*
Probab=96.96 E-value=0.0015 Score=66.65 Aligned_cols=111 Identities=19% Similarity=0.423 Sum_probs=68.6
Q ss_pred EechhHHHHHHHHHHHHHHHHhhhcCCCCCCCCCEEEEEEecCceeEEEEEEcCCCCChhhHhh--------hhhccccc
Q psy14548 235 IYVPSHLYHMLFELFKNSMRATVEHHTDTDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVTDM--------LFHYMYST 306 (482)
Q Consensus 235 ~~d~~~L~~il~NLl~NAik~t~~~~~~~~~~p~I~v~~~~~~~~~~i~V~D~G~GI~~~~~~~--------if~~f~~t 306 (482)
.+++ -|.+++.++|+||+......+. ...|.|++..+++ .|+|.|||.|||.+..+. ||.....+
T Consensus 60 ~~~~-GL~~lv~EivdNaiDe~~~~g~----~~~I~V~i~~d~~--sI~V~DnGrGIPv~~h~~~g~~~~E~v~t~LhaG 132 (418)
T 1pvg_A 60 TIVP-GLFKIFDEILVNAADNKVRDPS----MKRIDVNIHAEEH--TIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTS 132 (418)
T ss_dssp EECH-HHHHHHHHHHHHHHHHHHHCTT----CCEEEEEEETTTT--EEEEEEESSCCCCSBCTTTCSBHHHHHHHSSSEE
T ss_pred cccc-hHHHHHHHHHhCHHHHHHhcCC----CCEEEEEEECCCC--EEEEEECCCcccCcccccCCcccceEEEEEEecc
Confidence 3444 5899999999999988743211 2338888876543 688999999999887443 66655443
Q ss_pred CCCCCCCCCCCCCCCCcccCHHHHHHHHHHhCCEEEEEeec-CCcEEEEEEee
Q psy14548 307 APQPSKSDAHTVPLAGYGYGLPISRLYARYFHGDIMLLSCD-GLGTDAIIYLK 358 (482)
Q Consensus 307 ~~~~~~~~~~~~~~~G~GLGL~i~r~~~~~~gG~i~v~s~~-g~Gt~f~i~lp 358 (482)
... -+++-.-..+-.|.|.+.|..+.+. +.++... ..|-.+...+-
T Consensus 133 gKf--d~~~ykvSGGLhGVG~SvVNALS~~----l~V~v~r~rdGk~y~q~f~ 179 (418)
T 1pvg_A 133 SNY--DDDEKKVTGGRNGYGAKLCNIFSTE----FILETADLNVGQKYVQKWE 179 (418)
T ss_dssp SCC--CTTSCCCCSCCSSCHHHHHHHTEEE----EEEEEEETTTTEEEEEEEE
T ss_pred ccc--CCCceeccCCccceeeeeeeeccce----EEEEEEECCCCcEEEEEEE
Confidence 321 0111222234479999999887654 3344332 24555555553
No 62
>3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A*
Probab=96.80 E-value=0.002 Score=58.95 Aligned_cols=49 Identities=29% Similarity=0.534 Sum_probs=39.3
Q ss_pred hhHHHHHHHHHHHHHHHHhhhcCCCCCCCCCEEEEEEecCceeEEEEEEcCCCCChh
Q psy14548 238 PSHLYHMLFELFKNSMRATVEHHTDTDVLPPIEVSVVRGKEDICVKMSDKGGGIPRS 294 (482)
Q Consensus 238 ~~~L~~il~NLl~NAik~t~~~~~~~~~~p~I~v~~~~~~~~~~i~V~D~G~GI~~~ 294 (482)
+..|..++.+|++||+.....++. ..|.|.+..++ .|+|.|+|.|||.+
T Consensus 29 ~~gl~~~v~Elv~NsiD~~~ag~~-----~~I~V~i~~~g---~i~V~DnG~Gip~~ 77 (198)
T 3ttz_A 29 ERGLHHLVWEIVDNSIDEALAGYA-----NQIEVVIEKDN---WIKVTDNGRGIPVD 77 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSC-----CEEEEEEEGGG---EEEEEECSSCCCCS
T ss_pred CcchHHHHHHHHHHHHhHHhcCCC-----cEEEEEEeCCC---eEEEEECCCCcccc
Confidence 567999999999999998655532 22888887543 79999999999997
No 63
>3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum}
Probab=96.78 E-value=0.00052 Score=64.70 Aligned_cols=65 Identities=17% Similarity=0.228 Sum_probs=37.2
Q ss_pred EEEEEEecCceeEEEEEEcCCCCChhhHhhhhhcccccC-CC----CCCCCCCCCCCCCcccCHHHHHHH
Q psy14548 269 IEVSVVRGKEDICVKMSDKGGGIPRSVTDMLFHYMYSTA-PQ----PSKSDAHTVPLAGYGYGLPISRLY 333 (482)
Q Consensus 269 I~v~~~~~~~~~~i~V~D~G~GI~~~~~~~if~~f~~t~-~~----~~~~~~~~~~~~G~GLGL~i~r~~ 333 (482)
+.|.+..+.+.-+|.|.|||+||+++++...|....++. .. -..+.......+..|+|++-+-.+
T Consensus 119 l~I~I~~Dk~~~tLtI~DNGiGMTkeeL~~~LgtIA~SGtk~Fle~l~~~~~d~~~IGqFGVGFySaFmV 188 (272)
T 3ied_A 119 LIIKIKPDKEKKTLTITDNGIGMDKSELINNLGTIAQSGTAKFLKQIEEGKADSNLIGQFGVGFYSSFLV 188 (272)
T ss_dssp CCEEEEEETTTTEEEEEECSCCCCHHHHHHHTTCSCCHHHHHHHHHHHTTSSCTTCGGGSCCGGGGGGGT
T ss_pred cEEEEEEeCCCCEEEEEeCCCCCCHHHHHHHHHHHhhcchhhHHHHhhcccccccccCcccceeheeecc
Confidence 444444455556799999999999999987653321110 00 000001223446789998866444
No 64
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae}
Probab=94.67 E-value=0.077 Score=60.75 Aligned_cols=89 Identities=19% Similarity=0.427 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCCCCCCEEEEEEecCceeEEEEEEcCCCCChhh--------HhhhhhcccccCCCCC
Q psy14548 240 HLYHMLFELFKNSMRATVEHHTDTDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSV--------TDMLFHYMYSTAPQPS 311 (482)
Q Consensus 240 ~L~~il~NLl~NAik~t~~~~~~~~~~p~I~v~~~~~~~~~~i~V~D~G~GI~~~~--------~~~if~~f~~t~~~~~ 311 (482)
-|++++.++|+||+.-...++.- ..|.|++...++ .|+|+|+|.|||-+. .+-||....++...
T Consensus 59 GL~hl~~EildNsiDea~ag~~~----~~I~V~i~~~d~--sisV~DnGRGIPvd~h~~~~~~~~Evv~t~LhAGgKF-- 130 (1177)
T 4gfh_A 59 GLFKIFDEILVNAADNKVRDPSM----KRIDVNIHAEEH--TIEVKNDGKGIPIEIHNKENIYIPEMIFGHLLTSSNY-- 130 (1177)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTC----CEEEEEEETTTT--EEEEEECSSCCCCSBCTTTCSBHHHHHHHSSSEESCC--
T ss_pred eeeeEeeEEEEChHhHHhhCCCC----CeEEEEEECCCC--EEEEEecCCcccccccCCCCCEeeeeeccccccccCc--
Confidence 58999999999999976655421 128888865444 478999999999764 34566665554322
Q ss_pred CCCCCCCCCCCcccCHHHHHHHHHH
Q psy14548 312 KSDAHTVPLAGYGYGLPISRLYARY 336 (482)
Q Consensus 312 ~~~~~~~~~~G~GLGL~i~r~~~~~ 336 (482)
-+++-.-+.+-.|.|.+.|..+.+.
T Consensus 131 d~~~ykvSGGLHGVG~svVNALS~~ 155 (1177)
T 4gfh_A 131 DDDEKKVTGGRNGYGAKLCNIFSTE 155 (1177)
T ss_dssp CCSSCCCCSCCSSCHHHHHHHTEEE
T ss_pred CCCCCeEeccCCChhhhHHhhcCCc
Confidence 1111222224479999999887543
No 65
>3zcc_A HAMP, osmolarity sensor protein ENVZ; signaling protein, signal transduction, membrane protein, signalling, chimera; 1.25A {Archaeoglobus fulgidus} PDB: 3zrw_A 3zrv_A 3zrx_A 3zrw_B 2lfr_A 2lfs_A 1joy_A 2l7h_A 2l7i_A 2y20_A 2y21_A 2y0q_A 2y0t_A
Probab=92.75 E-value=0.47 Score=37.51 Aligned_cols=95 Identities=8% Similarity=0.012 Sum_probs=54.4
Q ss_pred HHHHHHHHhcCChh----hhc-CChHHHHHHHHHHHHHHHHcccccCCCCchhHHHHHHHHHHHHHhhchhHHHHHHHHH
Q psy14548 55 LANIMKEIHLLPDN----LLR-MPSVGLVNEWYAMSFDEILEFEKADSNSTDTLDKFCKALVKIRNRHSDVVQTMAQGVM 129 (482)
Q Consensus 55 la~ri~~l~~lp~~----l~~-~~~i~~v~~~y~~sf~~l~~~~~~~~~~~~~~~~f~~~l~~~l~~~~~~i~~la~g~~ 129 (482)
+...+..+....+. ... ...+..+...+.+..+.+... .+...+|...++|++++|++.+...++.+.
T Consensus 14 l~~~~~~i~~g~~~~~~~~~~~~dEi~~l~~~~n~m~~~l~~~-------~~~~~~~~~~~shel~tpl~~i~~~~e~l~ 86 (114)
T 3zcc_A 14 LSNTADKIAEGNLEAEVPHQNRADEIGILAKSIERLRRSLKQL-------ADDGTLLMAGVSHDLRTPLTRIRLATEMMS 86 (114)
T ss_dssp HHHHHHHHHTTCTTCCCTTTTCSSHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHhcCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhhHHHcChHHHHHHHHHHHH
Confidence 44555555433221 222 345555544444444444432 345678999999999999999876655321
Q ss_pred HHhhhcCCCCCChHHHHHHHHHHHHhhhhHHHHHHHHHHh
Q psy14548 130 ELKDSHDVDHQTENSIQYFLDRFYMSRISIRMLINQHTLL 169 (482)
Q Consensus 130 e~~~~~~~~~~~~e~~~~~Ld~i~~sri~~r~Li~~~l~L 169 (482)
++..++++.+..+...+..++++.+.+
T Consensus 87 -------------~~~~~~~~~i~~~~~~l~~~i~~ll~~ 113 (114)
T 3zcc_A 87 -------------EQDGYLAESINKDIEECNAIIEQFIDY 113 (114)
T ss_dssp -------------GGGHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------------HhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 112334566666556666677776654
No 66
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=91.62 E-value=0.033 Score=50.59 Aligned_cols=29 Identities=3% Similarity=-0.345 Sum_probs=0.0
Q ss_pred HHHhCCEEEEEeecCCcEEEEEEeeCCCC
Q psy14548 334 ARYFHGDIMLLSCDGLGTDAIIYLKALSN 362 (482)
Q Consensus 334 ~~~~gG~i~v~s~~g~Gt~f~i~lp~~~~ 362 (482)
+-.|||.|.++|.+|+||+|+++||....
T Consensus 16 ~~~hgG~i~v~S~~g~Gs~f~~~lP~~~~ 44 (206)
T 3mm4_A 16 RGSHMASTDSESETRVKSVRTGRKPIGNP 44 (206)
T ss_dssp -----------------------------
T ss_pred ccccCCceeeeccCCCcceeeeccCCCCC
Confidence 46799999999999999999999997543
No 67
>1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3
Probab=86.87 E-value=0.86 Score=38.87 Aligned_cols=43 Identities=21% Similarity=0.267 Sum_probs=38.9
Q ss_pred cCCCCcccchhhhhcccCCceeEEecccccccEEEEecccCcc
Q psy14548 423 AGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLKALSNE 465 (482)
Q Consensus 423 a~~g~glp~~~~~a~~~~~~~~~~~~~g~g~d~~~~~~~~~~~ 465 (482)
.|.|+||.+++..++..||.+.+.+-.|-|+.+.+.|+.....
T Consensus 111 ~g~GlGL~i~~~~~~~~gG~i~~~~~~~~G~~~~i~lP~~~~~ 153 (161)
T 1bxd_A 111 SGTGLGLAIVQRIVDNHNGMLELGTSERGGLSIRAWLPVPVTR 153 (161)
T ss_dssp CCCSCCCCTTHHHHHHHTSEEEEEEETTTEEEEEEEECCCSCC
T ss_pred CCcccCHHHHHHHHHHcCCEEEEEECCCCeEEEEEEEeCCccc
Confidence 5889999999999999999999999999999999999876544
No 68
>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A
Probab=86.69 E-value=0.42 Score=40.31 Aligned_cols=43 Identities=19% Similarity=0.255 Sum_probs=38.0
Q ss_pred cCCCCcccchhhhhcccCCceeEEecccccccEEEEecccCcc
Q psy14548 423 AGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLKALSNE 465 (482)
Q Consensus 423 a~~g~glp~~~~~a~~~~~~~~~~~~~g~g~d~~~~~~~~~~~ 465 (482)
.|.|+||.+++..++..||.+.+.+-.|.|+.+.++++.-...
T Consensus 106 ~g~GlGL~i~~~~~~~~gG~i~~~~~~~~G~~~~i~lP~~~~~ 148 (152)
T 1id0_A 106 PGQGVGLAVAREITEQYEGKIVAGESMLGGARMEVIFGRQHSA 148 (152)
T ss_dssp TTCCSCHHHHHHHHHHTTCEEEEEECTTSSEEEEEEECCCC--
T ss_pred CCcccCHHHHHHHHHHcCCEEEEEeCCCCcEEEEEEEeccccC
Confidence 4789999999999999999999999999999999999876543
No 69
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A*
Probab=86.14 E-value=0.34 Score=45.04 Aligned_cols=41 Identities=24% Similarity=0.380 Sum_probs=36.8
Q ss_pred cCCCCcccchhhhhcccCCceeEEecccccccEEEEecccC
Q psy14548 423 AGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLKALS 463 (482)
Q Consensus 423 a~~g~glp~~~~~a~~~~~~~~~~~~~g~g~d~~~~~~~~~ 463 (482)
.|.|+||.+++..++..||.+.+.+-.|-|+.+.++|+.-.
T Consensus 209 ~G~GLGL~i~~~iv~~~gG~i~v~s~~~~Gt~f~i~lP~~~ 249 (258)
T 2c2a_A 209 PGTGLGLAITKEIVELHGGRIWVESEVGKGSRFFVWIPKDR 249 (258)
T ss_dssp --CCCTHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEECCC
T ss_pred CCcchHHHHHHHHHHHcCCEEEEEecCCCCcEEEEEeeCCC
Confidence 58999999999999999999999999999999999999743
No 70
>1i58_A Chemotaxis protein CHEA; beta-alpha sandwich, signaling protein, transferase; HET: ACP ADP; 1.60A {Thermotoga maritima} SCOP: d.122.1.3 PDB: 1i59_A* 1i5a_A* 1i5b_A* 1i5c_A* 1i5d_A*
Probab=85.76 E-value=0.34 Score=42.79 Aligned_cols=38 Identities=26% Similarity=0.393 Sum_probs=35.9
Q ss_pred cCCCCcccchhhhhcccCCceeEEecccccccEEEEec
Q psy14548 423 AGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLK 460 (482)
Q Consensus 423 a~~g~glp~~~~~a~~~~~~~~~~~~~g~g~d~~~~~~ 460 (482)
.|.|+||.+++..++.+||.+.+.+-.|.|+.+.++|+
T Consensus 150 ~g~GlGL~iv~~~~~~~~G~i~i~s~~~~Gt~~~i~lP 187 (189)
T 1i58_A 150 SGRGVGMDVVKNVVESLNGSISIESEKDKGTKVTIRLP 187 (189)
T ss_dssp GTCCCHHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEE
T ss_pred CCCccCHHHHHHHHHHcCCEEEEEeCCCCceEEEEEEe
Confidence 57899999999999999999999999999999999886
No 71
>1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A
Probab=85.33 E-value=0.47 Score=39.99 Aligned_cols=39 Identities=23% Similarity=0.295 Sum_probs=33.4
Q ss_pred cCCCCcccchhhhhcccCCceeEEecccccccEEEEecc
Q psy14548 423 AGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLKA 461 (482)
Q Consensus 423 a~~g~glp~~~~~a~~~~~~~~~~~~~g~g~d~~~~~~~ 461 (482)
.|.|+||.+++..++..||.+.+.+-.|-|+.+.+.++.
T Consensus 110 ~g~GlGL~i~~~~~~~~gG~i~~~~~~~~G~~~~i~lP~ 148 (150)
T 1ysr_A 110 SGSGLGLALVAQQAQLHGGTASLENSPLGGARLVLRLPG 148 (150)
T ss_dssp ----CCCHHHHHHHHHTTCEEEEEECTTSSEEEEEEEEC
T ss_pred CCCCcCHHHHHHHHHHcCCEEEEeecCCCCEEEEEEEeC
Confidence 478999999999999999999999999999999999875
No 72
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli}
Probab=84.13 E-value=0.34 Score=43.55 Aligned_cols=41 Identities=20% Similarity=0.229 Sum_probs=34.5
Q ss_pred cCCCCcccchhhhhcccCCceeEEecccccccEEEEecccC
Q psy14548 423 AGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLKALS 463 (482)
Q Consensus 423 a~~g~glp~~~~~a~~~~~~~~~~~~~g~g~d~~~~~~~~~ 463 (482)
.|.|+||.+++..++..||.+.+.+-.|-||.+++.++.-.
T Consensus 178 ~g~GlGL~i~~~i~~~~gG~i~i~s~~~~Gt~v~~~~P~~~ 218 (222)
T 3jz3_A 178 TGSGLGLSIVQRIAKLHGMNVEFGNAEQGGFEAKVSWLEHH 218 (222)
T ss_dssp ----CTHHHHHHHHHHTTCEEECCBCTTSSBEEEEECCCC-
T ss_pred CcccccHHHHHHHHHHcCCEEEEEcCCCCcEEEEEeecCCC
Confidence 47899999999999999999999999999999999998643
No 73
>3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis}
Probab=82.37 E-value=0.6 Score=40.65 Aligned_cols=43 Identities=33% Similarity=0.418 Sum_probs=38.4
Q ss_pred ccCCCCcccchhhhhcccCCceeEEecccccccEEEEecccCc
Q psy14548 422 LAGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLKALSN 464 (482)
Q Consensus 422 la~~g~glp~~~~~a~~~~~~~~~~~~~g~g~d~~~~~~~~~~ 464 (482)
-.|.|+||.+++..++..||.+.+.+-.|.|+.+.+.|+.-..
T Consensus 112 ~~g~GlGL~iv~~~~~~~~G~i~i~~~~~~Gt~~~i~lP~~~~ 154 (177)
T 3sl2_A 112 LGGTGLGLAIAKEMVQAHGGDIWADSIEGKGTTITFTLPYKEE 154 (177)
T ss_dssp CCCCCCHHHHHHHHHHHTTCCEEEEEETTTEEEEEEEEEEEC-
T ss_pred CCCCCcCHHHHHHHHHHcCCEEEEEecCCCCeEEEEEEeCCCC
Confidence 3578999999999999999999999999999999999987543
No 74
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus}
Probab=80.80 E-value=0.77 Score=41.82 Aligned_cols=44 Identities=27% Similarity=0.314 Sum_probs=38.8
Q ss_pred ccCCCCcccchhhhhcccCCceeEEecccccccEEEEecccCcc
Q psy14548 422 LAGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLKALSNE 465 (482)
Q Consensus 422 la~~g~glp~~~~~a~~~~~~~~~~~~~g~g~d~~~~~~~~~~~ 465 (482)
..|.|+||.+++..++..||.+.+.+-.|-|+.+.++|+.....
T Consensus 185 ~~g~GlGL~i~~~i~~~~gG~i~~~~~~~~G~~~~i~lP~~~~~ 228 (244)
T 3d36_A 185 VKGTGLGMMVVYRIIESMNGTIRIESEIHKGTTVSIYLPLASSP 228 (244)
T ss_dssp GGCCSCHHHHHHHHHHHTTCEEEEEEETTTEEEEEEEEECCC--
T ss_pred CCCcchhHHHHHHHHHHcCCEEEEEecCCCcEEEEEEecCCCCC
Confidence 35789999999999999999999999999999999999976544
No 75
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus}
Probab=77.49 E-value=1.2 Score=41.37 Aligned_cols=43 Identities=23% Similarity=0.275 Sum_probs=38.1
Q ss_pred cCCCCcccchhhhhcccCCceeEEecccccccEEEEecccCcc
Q psy14548 423 AGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLKALSNE 465 (482)
Q Consensus 423 a~~g~glp~~~~~a~~~~~~~~~~~~~g~g~d~~~~~~~~~~~ 465 (482)
.|.|+||.+++..++..||.+.+.+-.|-|+.+.+.|+.....
T Consensus 217 ~g~GlGL~i~~~~~~~~gG~i~i~s~~~~Gt~~~i~lP~~~~~ 259 (268)
T 4ew8_A 217 GGPGLGLALVKALVELHGGWVALESEPGNGSTFTCHLPETQQP 259 (268)
T ss_dssp CCCTTHHHHHHHHHHHTTCEEEEEECTTSCEEEEEEEECCC--
T ss_pred CCCcccHHHHHHHHHHcCCEEEEEecCCCCEEEEEEecCCCCC
Confidence 3789999999999999999999999999999999999975443
No 76
>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A
Probab=77.12 E-value=1.5 Score=36.65 Aligned_cols=39 Identities=26% Similarity=0.305 Sum_probs=34.2
Q ss_pred cCCCCcccchhhhhc-ccCCceeEEecccccccEEEEeccc
Q psy14548 423 AGYGYGLPISRLYAR-YFHGDIMLLSCDGLGTDAIIYLKAL 462 (482)
Q Consensus 423 a~~g~glp~~~~~a~-~~~~~~~~~~~~g~g~d~~~~~~~~ 462 (482)
.|.|+||.+++..++ ..||.+.+-+-.| |+.+.+.++..
T Consensus 109 ~g~GlGL~i~~~~~~~~~gg~~~~~~~~~-g~~~~i~lP~~ 148 (152)
T 3a0y_A 109 QGTGLGLSICRKIIEDEHGGKIWTENREN-GVVFIFEIPKT 148 (152)
T ss_dssp -CCCCSHHHHHHHHHTTTSCEEEEEEETT-EEEEEEEEESC
T ss_pred CCCCcCHHHHHHHHHHhCCcEEEEecCCC-CEEEEEEeCCC
Confidence 378999999999998 9999999988776 99999998864
No 77
>3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase; HET: ATP; 1.74A {Bacillus subtilis}
Probab=74.37 E-value=1.5 Score=35.98 Aligned_cols=37 Identities=19% Similarity=0.220 Sum_probs=33.8
Q ss_pred cCCCCcccchhhhhcccCCceeEEecccccccEEEEecc
Q psy14548 423 AGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLKA 461 (482)
Q Consensus 423 a~~g~glp~~~~~a~~~~~~~~~~~~~g~g~d~~~~~~~ 461 (482)
.|.|+||.+.+..++..||.+.+-+-+ |+.+.++++.
T Consensus 89 ~g~GlGL~~~~~~~~~~gG~i~~~s~~--Gt~~~i~lP~ 125 (128)
T 3ehg_A 89 FSKGHGLLGMRERLEFANGSLHIDTEN--GTKLTMAIPN 125 (128)
T ss_dssp CCTTSHHHHHHHHHHHTTCEEEEECSS--SEEEEEEEEC
T ss_pred CCCCccHHHHHHHHHHcCCEEEEEeCC--CEEEEEEEec
Confidence 578999999999999999999999988 9999998874
No 78
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A*
Probab=71.76 E-value=1.5 Score=39.22 Aligned_cols=37 Identities=19% Similarity=0.220 Sum_probs=31.0
Q ss_pred cCCCCcccchhhhhcccCCceeEEecccccccEEEEecc
Q psy14548 423 AGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLKA 461 (482)
Q Consensus 423 a~~g~glp~~~~~a~~~~~~~~~~~~~g~g~d~~~~~~~ 461 (482)
.|.|+||.+++..++..||.+.+-+-+ |+.+.++|+.
T Consensus 179 ~g~GlGL~~~~~~v~~~gG~i~~~s~~--Gt~~~i~lP~ 215 (218)
T 3ehh_A 179 FSKGHGLLGMRERLEFANGSLHIDTEN--GTKLTMAIPN 215 (218)
T ss_dssp ----CHHHHHHHHHHHTTCEEEEECSS--SEEEEEEEEC
T ss_pred CCCCCCHHHHHHHHHHcCCEEEEeCCC--CeEEEEEEec
Confidence 678999999999999999999999988 9999998874
No 79
>3zxo_A Redox sensor histidine kinase response regulator; transferase; HET: MSE; 1.90A {Mycobacterium tuberculosis}
Probab=71.74 E-value=1.6 Score=35.47 Aligned_cols=37 Identities=30% Similarity=0.189 Sum_probs=34.1
Q ss_pred CCCcccchhhhhcccCCceeEEeccc-ccccEEEEecc
Q psy14548 425 YGYGLPISRLYARYFHGDIMLLSCDG-LGTDAIIYLKA 461 (482)
Q Consensus 425 ~g~glp~~~~~a~~~~~~~~~~~~~g-~g~d~~~~~~~ 461 (482)
.|+||.+++..++..||.+.+.+-+| -|+.+.++++-
T Consensus 90 ~GlGL~i~~~~~~~~gG~i~~~~~~~~~G~~~~i~lP~ 127 (129)
T 3zxo_A 90 TGSGLTNLRQRAEQAGGEFTLASMPGASGTVLRWSAPL 127 (129)
T ss_dssp CSHHHHHHHHHHHHTTCEEEEEECTTTCCEEEEEEEES
T ss_pred CCcCHHHHHHHHHHcCCEEEEeeCCCCCcEEEEEEecC
Confidence 58999999999999999999999999 89999998863
No 80
>1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi-domai protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* 3ur1_A
Probab=71.04 E-value=2 Score=42.83 Aligned_cols=41 Identities=22% Similarity=0.336 Sum_probs=34.9
Q ss_pred cccCCCCcccchhhhhcccCCceeEEecccccccEEEEecc
Q psy14548 421 PLAGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLKA 461 (482)
Q Consensus 421 pla~~g~glp~~~~~a~~~~~~~~~~~~~g~g~d~~~~~~~ 461 (482)
...|.|+||.+++..++..||.+.+-|-+|-||.+.++|+-
T Consensus 207 ~~~G~GlGL~iv~~~v~~~gG~i~v~s~~g~Gt~f~i~lPl 247 (379)
T 1b3q_A 207 EVSGRGVGMDVVKNVVESLNGSMGIESEKDKGTKVTIRLPL 247 (379)
T ss_dssp -----CCCSHHHHHHHHHTTCEEEEEEETTTEEEEEEEEES
T ss_pred CCCCccccHHHHHHHHHHCCCEEEEEEcCCCCeEEEeccCC
Confidence 45789999999999999999999999999999999999985
No 81
>3zrx_A AF1503 protein, osmolarity sensor protein ENVZ; signaling protein, osmoregulation, OMPR, OMPC; 1.25A {Archaeoglobus fulgidus} PDB: 3zrv_A 3zrw_A 3zrw_B 2lfs_A 2lfr_A 1joy_A 2l7i_A 2y20_A 2l7h_A 2y21_A 2y0t_A 2y0q_A
Probab=69.79 E-value=16 Score=28.08 Aligned_cols=78 Identities=8% Similarity=0.043 Sum_probs=44.0
Q ss_pred CChHHHHHHHHHHHHHHHHcccccCCCCchhHHHHHHHHHHHHHhhchhHHHHHHHHHHHhhhcCCCCCChHHHHHHHHH
Q psy14548 72 MPSVGLVNEWYAMSFDEILEFEKADSNSTDTLDKFCKALVKIRNRHSDVVQTMAQGVMELKDSHDVDHQTENSIQYFLDR 151 (482)
Q Consensus 72 ~~~i~~v~~~y~~sf~~l~~~~~~~~~~~~~~~~f~~~l~~~l~~~~~~i~~la~g~~e~~~~~~~~~~~~e~~~~~Ld~ 151 (482)
...+..+...+....+.+... .+...+|...++|.+++|+..+...++.+.+ ...+..+.
T Consensus 36 ~dEi~~l~~~~n~m~~~l~~~-------~~~~~~~~~~~shel~~~l~~i~~~~~~l~~-------------~~~~~~~~ 95 (115)
T 3zrx_A 36 ADEIGILAKSIERLRRSLKQL-------ADDRTLLMAGVSHDLRTPLTRIRLATEMMSE-------------QDGYLAES 95 (115)
T ss_dssp CSHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHTSCG-------------GGHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-------------hhHHHHHH
Confidence 344555444444433333332 2345789999999999999998766653211 11344555
Q ss_pred HHHhhhhHHHHHHHHHHh
Q psy14548 152 FYMSRISIRMLINQHTLL 169 (482)
Q Consensus 152 i~~sri~~r~Li~~~l~L 169 (482)
+......+..++++.+.+
T Consensus 96 ~~~~~~~~~~~~~~l~~~ 113 (115)
T 3zrx_A 96 INKDIEECNAIIEQFIDY 113 (115)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 554444555566655544
No 82
>3zxq_A Hypoxia sensor histidine kinase response regulato; transferase; 1.90A {Mycobacterium tuberculosis}
Probab=68.75 E-value=1.5 Score=35.37 Aligned_cols=35 Identities=20% Similarity=-0.021 Sum_probs=33.3
Q ss_pred CCcccchhhhhcccCCceeEEecccccccEEEEec
Q psy14548 426 GYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLK 460 (482)
Q Consensus 426 g~glp~~~~~a~~~~~~~~~~~~~g~g~d~~~~~~ 460 (482)
|+||.+.+..++..||.+.+.+-+|-|+.+.++++
T Consensus 87 GlGL~~~~~~~~~~gG~i~~~~~~~~G~~~~i~lP 121 (124)
T 3zxq_A 87 ESGLRNLRQRADDAGGEFTVENMPTGGTLLRWSAP 121 (124)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEECTTSSEEEEEEEE
T ss_pred ccCHHHHHHHHHHhCCEEEEEEcCCCcEEEEEEEe
Confidence 89999999999999999999999999999999886
No 83
>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transfera; 1.60A {Escherichia coli} SCOP: d.122.1.3
Probab=67.60 E-value=1.9 Score=36.22 Aligned_cols=38 Identities=34% Similarity=0.493 Sum_probs=31.8
Q ss_pred cCCCCcccchhhhhcccCCceeEEecccccccEEEEecc
Q psy14548 423 AGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLKA 461 (482)
Q Consensus 423 a~~g~glp~~~~~a~~~~~~~~~~~~~g~g~d~~~~~~~ 461 (482)
.|.|+||.+++..++..||.+.+.+-.|. +.+.+.++.
T Consensus 121 ~g~GlGL~i~~~~~~~~gG~l~i~s~~~~-~~~~i~lP~ 158 (160)
T 1r62_A 121 GGTGLGLSIARNLIDQHSGKIEFTSWPGH-TEFSVYLPI 158 (160)
T ss_dssp ---CHHHHHHHHHHHHTTCEEEEEEETTE-EEEEEEEEE
T ss_pred CCCccCHHHHHHHHHHCCCeEEEEeCCCC-EEEEEEEec
Confidence 47899999999999999999999998886 888888763
No 84
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=60.45 E-value=4.6 Score=38.72 Aligned_cols=40 Identities=25% Similarity=0.301 Sum_probs=32.5
Q ss_pred cCCCCcccchhhhhc-ccCCceeEEecccccccEEEEecccC
Q psy14548 423 AGYGYGLPISRLYAR-YFHGDIMLLSCDGLGTDAIIYLKALS 463 (482)
Q Consensus 423 a~~g~glp~~~~~a~-~~~~~~~~~~~~g~g~d~~~~~~~~~ 463 (482)
.|.|+||.+++..++ ..||.+.+-+-.| |+.+.+.|+.-.
T Consensus 306 ~g~GlGL~i~~~~v~~~~gg~i~~~~~~~-Gt~f~i~lP~~~ 346 (349)
T 3a0r_A 306 QGTGLGLSICRKIIEDEHGGKIWTENREN-GVVFIFEIPKTP 346 (349)
T ss_dssp ----CCCTHHHHHHHHTTCSBCCEEECSS-EEEEEEEEESCT
T ss_pred CCccchHHHHHHHHHHhCCCEEEEEeCCC-cEEEEEEecCCC
Confidence 378999999999998 8999999999877 999999998643
No 85
>4fpp_A Phosphotransferase; four helix bundle, bergerat fold, CCKA, CTRA, CPDR, bacterial cytoplasme; 2.20A {Caulobacter crescentus} PDB: 4fmt_A
Probab=59.43 E-value=2.2 Score=39.56 Aligned_cols=39 Identities=15% Similarity=0.091 Sum_probs=34.8
Q ss_pred ccCCCCcccchhhhhcccCCceeEEecccccccEEEEecc
Q psy14548 422 LAGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLKA 461 (482)
Q Consensus 422 la~~g~glp~~~~~a~~~~~~~~~~~~~g~g~d~~~~~~~ 461 (482)
..|.|.||.+++..++..||.+.+-+-+| |+.+-++|+.
T Consensus 209 ~~G~GLGLai~~~iv~~hGG~i~v~s~~~-G~~f~v~LPA 247 (247)
T 4fpp_A 209 LGGPWVQAAYLNALVRAAGGQIAVEIGED-RASIAAWVPA 247 (247)
T ss_dssp CHHHHHHHHHHHHHHHHTTCEEEEEEETT-EEEEEEEEEC
T ss_pred CCCccHHHHHHHHHHHHcCCEEEEEEcCC-EEEEEEEecC
Confidence 34789999999999999999999999887 9999998874
No 86
>1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A*
Probab=29.55 E-value=27 Score=28.59 Aligned_cols=37 Identities=16% Similarity=0.263 Sum_probs=31.7
Q ss_pred cCCCCcccchhhhhcccCCceeEEecccccccEEEEecccC
Q psy14548 423 AGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLKALS 463 (482)
Q Consensus 423 a~~g~glp~~~~~a~~~~~~~~~~~~~g~g~d~~~~~~~~~ 463 (482)
.|.|+||.+.+.+++ .+.+.+-.|-|+.+.++++...
T Consensus 104 ~~~GlGL~iv~~~~~----~i~~~~~~~~Gt~v~~~lp~~~ 140 (145)
T 1th8_A 104 ERSGMGFTIMENFMD----EVIVESEVNKGTTVYLKKHGIH 140 (145)
T ss_dssp CCCSCHHHHHHHHSS----EEEEEEETTTEEEEEEEECCC-
T ss_pred CCCcchHHHHHHHHh----eEEEEeCCCCCEEEEEEEeccc
Confidence 578999999999988 7888888999999999998654
No 87
>1slu_A Ecotin; serine protease, inhibitor, complex, metal binding sites, PR engineering, protease-substrate interactions; 1.80A {Escherichia coli} SCOP: b.16.1.1 PDB: 1slv_A 1slw_A 1slx_A 1n8o_E 1azz_C* 1ecz_A* 1ecy_A 1xx9_C* 1p0s_E* 1id5_I* 1ezu_A 1xxf_C 1ezs_A 1xxd_C 1ifg_A 1fi8_C 1fi8_D
Probab=27.42 E-value=34 Score=28.88 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=20.5
Q ss_pred ccCCceeEEecccccccEEEEec
Q psy14548 438 YFHGDIMLLSCDGLGTDAIIYLK 460 (482)
Q Consensus 438 ~~~~~~~~~~~~g~g~d~~~~~~ 460 (482)
.|||.|+-.++.|||-+-|..-.
T Consensus 54 ~l~G~Leektl~GwGy~YY~~~~ 76 (142)
T 1slu_A 54 RLGGKLENKTLEGWGYDYYVFDK 76 (142)
T ss_dssp EBCCEEEEEEETTTTEEEEEEEC
T ss_pred eeccEEEEeeecCCCceEEEEec
Confidence 78999999999999999888544
No 88
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=27.31 E-value=2.3e+02 Score=29.59 Aligned_cols=100 Identities=14% Similarity=0.006 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCCCCCEEEEEEecCceeEEEEEEcCC---CCChhhHhh--------hhhcccccCCCC
Q psy14548 242 YHMLFELFKNSMRATVEHHTDTDVLPPIEVSVVRGKEDICVKMSDKGG---GIPRSVTDM--------LFHYMYSTAPQP 310 (482)
Q Consensus 242 ~~il~NLl~NAik~t~~~~~~~~~~p~I~v~~~~~~~~~~i~V~D~G~---GI~~~~~~~--------if~~f~~t~~~~ 310 (482)
..++.++|-||+-|..=.. ..+|.|.+..-++. |.|.+-|. |++.+.+.. |.+.|+..
T Consensus 298 ~~aiREal~NAl~HrDY~~-----~~~i~i~i~~~~dr--iei~npG~l~~~~t~e~~~~~~s~RNp~la~~~~~~---- 366 (583)
T 3lmm_A 298 RLAVREAMLNAMIHRDWNR-----SEPIDVRWIELDST--LIVRSPGGFPAAITSENVLSNRAARYPALADLYRAL---- 366 (583)
T ss_dssp HHHHHHHHHHHHHHSCSSS-----SSCEEEEEETTTTE--EEEEEESCCCTTCCTTSSTTCCCCSCHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHhccccCC-----CCCEEEEEEecCCE--EEEEcCCCCCCCCCHHHhcCCCCCCCHHHHHHHHHh----
Confidence 6788999999998863221 13488877633444 66888885 566654321 11112211
Q ss_pred CCCCCCCCCCCCcccCHHHHHHHHHHhCCE-EEEEeecCCcEEEEEEeeCCC
Q psy14548 311 SKSDAHTVPLAGYGYGLPISRLYARYFHGD-IMLLSCDGLGTDAIIYLKALS 361 (482)
Q Consensus 311 ~~~~~~~~~~~G~GLGL~i~r~~~~~~gG~-i~v~s~~g~Gt~f~i~lp~~~ 361 (482)
.-..+.|-|+.-....++..|.. -.+.... |..|.++||...
T Consensus 367 -------~~~e~~GsGi~~i~~~~~~~g~~~P~~~~~~--~~~~~v~l~~~~ 409 (583)
T 3lmm_A 367 -------GLVDKQGVGVDRMYQAMIALGHRPPTIEEIA--GPFVETTLVGGR 409 (583)
T ss_dssp -------TCSCSSHHHHHHHHHHHHHTTCCCCEEEEET--TTEEEEEEECCS
T ss_pred -------CccccCCcHHHHHHHHHHHcCCCCCeEEEcC--CCEEEEEEeCCC
Confidence 12256778887777777777763 3344333 356778888654
No 89
>2y6t_E Ecotin, chymotrypsinogen A; hydrolase-inhibitor complex; 2.74A {Yersinia pseudotuberculosis}
Probab=23.07 E-value=39 Score=28.68 Aligned_cols=29 Identities=17% Similarity=0.237 Sum_probs=22.6
Q ss_pred chhhhhcccCCceeEEecccccccEEEEec
Q psy14548 431 ISRLYARYFHGDIMLLSCDGLGTDAIIYLK 460 (482)
Q Consensus 431 ~~~~~a~~~~~~~~~~~~~g~g~d~~~~~~ 460 (482)
+.|-.. .|||.|+-.++.|||-+-|..-.
T Consensus 53 vDCN~~-~lgG~Leektl~GWGY~YY~v~~ 81 (148)
T 2y6t_E 53 VDCNRH-MLGGNLETRTLSGWGFDYLVMDK 81 (148)
T ss_dssp ECSSCE-EEECCEEEEECTTTCCEEEEECC
T ss_pred EccCCc-eeccEEEEEeecCCCceEEEEec
Confidence 334433 78999999999999999887544
Done!