RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14548
(482 letters)
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL
ATPase/kinase family, pyruvate dehydrogenase complex,
mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens}
PDB: 2q8f_A* 2q8h_A
Length = 407
Score = 404 bits (1039), Expect = e-139
Identities = 220/383 (57%), Positives = 285/383 (74%), Gaps = 1/383 (0%)
Query: 9 ASVSKMLDFYSQFNPSPLSIKQFIDFG-LSASEEKSFMFLRKELPVRLANIMKEIHLLPD 67
V +DFY++F+PSPLS+KQF+DFG ++A E+ SFMFLR+ELPVRLANIMKEI LLPD
Sbjct: 11 RGVPGQVDFYARFSPSPLSMKQFLDFGSVNACEKTSFMFLRQELPVRLANIMKEISLLPD 70
Query: 68 NLLRMPSVGLVNEWYAMSFDEILEFEKADSNSTDTLDKFCKALVKIRNRHSDVVQTMAQG 127
NLLR PSV LV WY S E+L+F+ + + F +++IRNRH+DV+ TMAQG
Sbjct: 71 NLLRTPSVQLVQSWYIQSLQELLDFKDKSAEDAKAIYDFTDTVIRIRNRHNDVIPTMAQG 130
Query: 128 VMELKDSHDVDHQTENSIQYFLDRFYMSRISIRMLINQHTLLFGDELTRGDSSLRHIGCI 187
V+E K+S VD T ++QYFLDRFYMSRISIRML+NQH+LLFG + S +HIG I
Sbjct: 131 VIEYKESFGVDPVTSQNVQYFLDRFYMSRISIRMLLNQHSLLFGGKGKGSPSHRKHIGSI 190
Query: 188 DPQCDLIGVVKDAYENARFLCEQYYLSSPELKVTEHNEYEKGEPVRIIYVPSHLYHMLFE 247
+P C+++ V+KD YENAR LC+ YY++SPEL++ E N G+P++++YVPSHLYHM+FE
Sbjct: 191 NPNCNVLEVIKDGYENARRLCDLYYINSPELELEELNAKSPGQPIQVVYVPSHLYHMVFE 250
Query: 248 LFKNSMRATVEHHTDTDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVTDMLFHYMYSTA 307
LFKN+MRAT+EHH + V PPI+V V G ED+ VKMSD+GGG+P D LF+YMYSTA
Sbjct: 251 LFKNAMRATMEHHANRGVYPPIQVHVTLGNEDLTVKMSDRGGGVPLRKIDRLFNYMYSTA 310
Query: 308 PQPSKSDAHTVPLAGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLKALSNEANEL 367
P+P + VPLAG+GYGLPISRLYA+YF GD+ L S +G GTDA+IY+KALS ++ E
Sbjct: 311 PRPRVETSRAVPLAGFGYGLPISRLYAQYFQGDLKLYSLEGYGTDAVIYIKALSTDSIER 370
Query: 368 LPIFNKTSSKFYRATIPTGDWSS 390
LP++NK + K Y DW
Sbjct: 371 LPVYNKAAWKHYNTNHEADDWCV 393
Score = 80.6 bits (198), Expect = 2e-16
Identities = 41/76 (53%), Positives = 55/76 (72%)
Query: 407 KTSSKHVPSDAHTVPLAGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLKALSNEA 466
T+ + + VPLAG+GYGLPISRLYA+YF GD+ L S +G GTDA+IY+KALS ++
Sbjct: 308 STAPRPRVETSRAVPLAGFGYGLPISRLYAQYFQGDLKLYSLEGYGTDAVIYIKALSTDS 367
Query: 467 NELLPIFNKTSSKFYR 482
E LP++NK + K Y
Sbjct: 368 IERLPVYNKAAWKHYN 383
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding,
structural genomics, NPPSFA, NATI project on protein
structural and functional analyses; HET: ANP; 1.86A
{Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A*
Length = 394
Score = 399 bits (1027), Expect = e-137
Identities = 211/383 (55%), Positives = 273/383 (71%), Gaps = 4/383 (1%)
Query: 9 ASVSKMLDFYSQFNPSPLSIKQFIDFG-LSASEEKSFMFLRKELPVRLANIMKEIHLLPD 67
V + ++ +S+++PSPLS+KQ +DFG +A E SF FLR+ELPVRLANI+KEI +LP
Sbjct: 1 GPVPREVEHFSRYSPSPLSMKQLLDFGSENACERTSFAFLRQELPVRLANILKEIDILPT 60
Query: 68 NLLRMPSVGLVNEWYAMSFDEILEFEKADSNSTDTLDKFCKALVKIRNRHSDVVQTMAQG 127
L+ SV LV WY S +++EF + + L F L+K+RNRH +VV TMAQG
Sbjct: 61 QLVNTSSVQLVKSWYIQSLMDLVEFHEKSPDDQKALSDFVDTLIKVRNRHHNVVPTMAQG 120
Query: 128 VMELKDSHDVDHQTENSIQYFLDRFYMSRISIRMLINQHTLLFGDELTRGDSSLRHIGCI 187
++E KD+ VD T ++QYFLDRFYM+RIS RML+NQH L+F D T HIG I
Sbjct: 121 IIEYKDACTVDPVTNQNLQYFLDRFYMNRISTRMLMNQHILIFSDSQTGNP---SHIGSI 177
Query: 188 DPQCDLIGVVKDAYENARFLCEQYYLSSPELKVTEHNEYEKGEPVRIIYVPSHLYHMLFE 247
DP CD++ VV+DA+E +R LC+QYYLSSPELK+T+ N +P+ I+YVPSHL+HMLFE
Sbjct: 178 DPNCDVVAVVQDAFECSRMLCDQYYLSSPELKLTQVNGKFPDQPIHIVYVPSHLHHMLFE 237
Query: 248 LFKNSMRATVEHHTDTDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVTDMLFHYMYSTA 307
LFKN+MRATVEH + L PIEV VV GKED+ +K+SD+GGG+P + D LF Y YSTA
Sbjct: 238 LFKNAMRATVEHQENQPSLTPIEVIVVLGKEDLTIKISDRGGGVPLRIIDRLFSYTYSTA 297
Query: 308 PQPSKSDAHTVPLAGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLKALSNEANEL 367
P P ++ PLAG+GYGLPISRLYA+YF GD+ L S G GTDAIIYLKALS+E+ E
Sbjct: 298 PTPVMDNSRNAPLAGFGYGLPISRLYAKYFQGDLNLYSLSGYGTDAIIYLKALSSESIEK 357
Query: 368 LPIFNKTSSKFYRATIPTGDWSS 390
LP+FNK++ K Y+ + DW
Sbjct: 358 LPVFNKSAFKHYQMSSEADDWCI 380
Score = 88.3 bits (218), Expect = 3e-19
Identities = 50/128 (39%), Positives = 66/128 (51%), Gaps = 27/128 (21%)
Query: 355 IYLKALSNEANELLPIFNKTSSKFYRATIPTGDWSSTQSACMEHRHPTISQSKTSSKHVP 414
+ +K L I ++ S Y T+ V
Sbjct: 270 LTIKISDRGGGVPLRIIDRLFSYTYS---------------------------TAPTPVM 302
Query: 415 SDAHTVPLAGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLKALSNEANELLPIFN 474
++ PLAG+GYGLPISRLYA+YF GD+ L S G GTDAIIYLKALS+E+ E LP+FN
Sbjct: 303 DNSRNAPLAGFGYGLPISRLYAKYFQGDLNLYSLSGYGTDAIIYLKALSSESIEKLPVFN 362
Query: 475 KTSSKFYR 482
K++ K Y+
Sbjct: 363 KSAFKHYQ 370
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation,
transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A*
2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A*
Length = 394
Score = 397 bits (1020), Expect = e-136
Identities = 218/383 (56%), Positives = 279/383 (72%), Gaps = 4/383 (1%)
Query: 9 ASVSKMLDFYSQFNPSPLSIKQFIDFGLSASEEK-SFMFLRKELPVRLANIMKEIHLLPD 67
S K ++ +S+F+PSPLS+KQF+DFG S + EK SF FLR+ELPVRLANIMKEI+LLPD
Sbjct: 1 GSAPKYIEHFSKFSPSPLSMKQFLDFGSSNACEKTSFTFLRQELPVRLANIMKEINLLPD 60
Query: 68 NLLRMPSVGLVNEWYAMSFDEILEFEKADSNSTDTLDKFCKALVKIRNRHSDVVQTMAQG 127
+L PSV LV WY S +I+EF D TL +F ALV IRNRH+DVV TMAQG
Sbjct: 61 RVLSTPSVQLVQSWYVQSLLDIMEFLDKDPEDHRTLSQFTDALVTIRNRHNDVVPTMAQG 120
Query: 128 VMELKDSHDVDHQTENSIQYFLDRFYMSRISIRMLINQHTLLFGDELTRGDSSLRHIGCI 187
V+E KD++ D + +IQYFLDRFY+SRISIRMLINQHTL+F +HIG I
Sbjct: 121 VLEYKDTYGDDPVSNQNIQYFLDRFYLSRISIRMLINQHTLIFDGSTNPAHP--KHIGSI 178
Query: 188 DPQCDLIGVVKDAYENARFLCEQYYLSSPELKVTEHNEYEKGEPVRIIYVPSHLYHMLFE 247
DP C++ VVKDAY+ A+ LC++YY++SP+L++ E N +P+ ++YVPSHLYHMLFE
Sbjct: 179 DPNCNVSEVVKDAYDMAKLLCDKYYMASPDLEIQEINAANSKQPIHMVYVPSHLYHMLFE 238
Query: 248 LFKNSMRATVEHHTDTDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVTDMLFHYMYSTA 307
LFKN+MRATVE H + +LPPI+V V G+ED+ +KMSD+GGG+P + LF YMYSTA
Sbjct: 239 LFKNAMRATVESHESSLILPPIKVMVALGEEDLSIKMSDRGGGVPLRKIERLFSYMYSTA 298
Query: 308 PQPSKSDAHTVPLAGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLKALSNEANEL 367
P P T PLAG+GYGLPISRLYA+YF GD+ L S +G GTDA+IYLKALS ++ E
Sbjct: 299 PTPQPGTGGT-PLAGFGYGLPISRLYAKYFQGDLQLFSMEGFGTDAVIYLKALSTDSVER 357
Query: 368 LPIFNKTSSKFYRATIPTGDWSS 390
LP++NK++ + Y+ GDW
Sbjct: 358 LPVYNKSAWRHYQTIQEAGDWCV 380
Score = 78.7 bits (193), Expect = 6e-16
Identities = 40/79 (50%), Positives = 56/79 (70%)
Query: 404 SQSKTSSKHVPSDAHTVPLAGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLKALS 463
S +++ PLAG+GYGLPISRLYA+YF GD+ L S +G GTDA+IYLKALS
Sbjct: 292 SYMYSTAPTPQPGTGGTPLAGFGYGLPISRLYAKYFQGDLQLFSMEGFGTDAVIYLKALS 351
Query: 464 NEANELLPIFNKTSSKFYR 482
++ E LP++NK++ + Y+
Sbjct: 352 TDSVERLPVYNKSAWRHYQ 370
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate
dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED
ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB:
1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A*
Length = 419
Score = 392 bits (1008), Expect = e-134
Identities = 224/391 (57%), Positives = 281/391 (71%), Gaps = 4/391 (1%)
Query: 2 RFTLRRCASVSKMLDFYSQFNPSPLSIKQFIDFGLSASEEK-SFMFLRKELPVRLANIMK 60
+ V K ++ YS+F+PSPLSIKQF+DFG + EK S+MFLRKELPVRLAN M+
Sbjct: 16 NLYFQGKQPVPKQIERYSRFSPSPLSIKQFLDFGRDNACEKTSYMFLRKELPVRLANTMR 75
Query: 61 EIHLLPDNLLRMPSVGLVNEWYAMSFDEILEFEKADSNSTDTLDKFCKALVKIRNRHSDV 120
E++LLPDNLL PSVGLV WY SF E+LE+E LD F + L+K+RNRH+DV
Sbjct: 76 EVNLLPDNLLNRPSVGLVQSWYMQSFLELLEYENKSPEDPQVLDNFLQVLIKVRNRHNDV 135
Query: 121 VQTMAQGVMELKDSHDVDHQTENSIQYFLDRFYMSRISIRMLINQHTLLFGDELTRGDSS 180
V TMAQGV+E K+ D +IQYFLDRFY +RIS RMLINQHTLLFG +
Sbjct: 136 VPTMAQGVIEYKEKFGFDPFISTNIQYFLDRFYTNRISFRMLINQHTLLFGGDT--NPVH 193
Query: 181 LRHIGCIDPQCDLIGVVKDAYENARFLCEQYYLSSPELKVTEHNEYEKGEPVRIIYVPSH 240
+HIG IDP C++ VVKDAYE A+ LCEQYYL +PEL+V E N +P++++YVPSH
Sbjct: 194 PKHIGSIDPTCNVADVVKDAYETAKMLCEQYYLVAPELEVEEFNAKAPDKPIQVVYVPSH 253
Query: 241 LYHMLFELFKNSMRATVEHHTDT-DVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVTDML 299
L+HMLFELFKNSMRATVE + D + P ++ V GKED+ +K+SD GGG+P D L
Sbjct: 254 LFHMLFELFKNSMRATVELYEDRKEGYPAVKTLVTLGKEDLSIKISDLGGGVPLRKIDRL 313
Query: 300 FHYMYSTAPQPSKSDAHTVPLAGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLKA 359
F+YMYSTAP+PS PLAG+GYGLPISRLYARYF GD+ L S +G+GTDA+IYLKA
Sbjct: 314 FNYMYSTAPRPSLEPTRAAPLAGFGYGLPISRLYARYFQGDLKLYSMEGVGTDAVIYLKA 373
Query: 360 LSNEANELLPIFNKTSSKFYRATIPTGDWSS 390
LS+E+ E LP+FNK++ + Y+ T DWS+
Sbjct: 374 LSSESFERLPVFNKSAWRHYKTTPEADDWSN 404
Score = 85.2 bits (210), Expect = 5e-18
Identities = 43/76 (56%), Positives = 57/76 (75%)
Query: 407 KTSSKHVPSDAHTVPLAGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLKALSNEA 466
T+ + PLAG+GYGLPISRLYARYF GD+ L S +G+GTDA+IYLKALS+E+
Sbjct: 319 STAPRPSLEPTRAAPLAGFGYGLPISRLYARYFQGDLKLYSMEGVGTDAVIYLKALSSES 378
Query: 467 NELLPIFNKTSSKFYR 482
E LP+FNK++ + Y+
Sbjct: 379 FERLPVFNKSAWRHYK 394
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase;
transferase, mitochondrial protein kinase, potassium;
HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1
d.122.1.4 PDB: 1gjv_A 1gkx_A*
Length = 388
Score = 340 bits (873), Expect = e-114
Identities = 102/379 (26%), Positives = 180/379 (47%), Gaps = 38/379 (10%)
Query: 13 KMLDFYSQFNPSPLSIKQFIDFGLSASEE---KSFMFLRKELPVRLANIMKEIHLLPDNL 69
+D ++ L+ + G S KS +L++ELPVR+A+ +K LP +
Sbjct: 27 SAIDVVAEKPSVRLTPTMMLYSGRSQDGSHLLKSGRYLQQELPVRIAHRIKGFRSLPFII 86
Query: 70 LRMPSVGLVNEWYAMSFDEILEFEKADSNSTDTLDKFCKALVKIRNRHSDVVQTMAQGVM 129
P++ V+E Y +F ++ +F ++C+ + ++ + H DVV +A+G+
Sbjct: 87 GCNPTILHVHELYIRAFQKLTDFPP--IKDQADEAQYCQLVRQLLDDHKDVVTLLAEGLR 144
Query: 130 ELKDSHDVDHQTENSIQYFLDRFYMSRISIRMLINQHTLLFGDELTRGDSSLRHIGCIDP 189
E + + + ++YFLD+ SR+ IRML H L + +G I
Sbjct: 145 ESRKHIEDEKL----VRYFLDKTLTSRLGIRMLATHHLALH-------EDKPDFVGIICT 193
Query: 190 QCDLIGVVKDAYENARFLCEQYYLSSPELKVTEHNEYEKGEPVRIIYVPSHLYHMLFELF 249
+ +++ + AR LCE Y ++P +++ H R ++P L ++L EL
Sbjct: 194 RLSPKKIIEKWVDFARRLCEHKYGNAPRVRINGH------VAARFPFIPMPLDYILPELL 247
Query: 250 KNSMRATVEHHTDTDV-LPPIEVSVVRGKEDICVKMSDKGGGIPRSVTDMLFHYMYSTAP 308
KN+MRAT+E H DT +P + +++ D+ +++SD+GGGI D + Y ++TA
Sbjct: 248 KNAMRATMESHLDTPYNVPDVVITIANNDVDLIIRISDRGGGIAHKDLDRVMDYHFTTAE 307
Query: 309 QPS--------------KSDAHTVPLAGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAI 354
+ S + P+ G+G+GLP SR YA Y G + L S G+GTD
Sbjct: 308 ASTQDPRISPLFGHLDMHSGGQSGPMHGFGFGLPTSRAYAEYLGGSLQLQSLQGIGTDVY 367
Query: 355 IYLKALSNEANELLPIFNK 373
+ L+ + E I +
Sbjct: 368 LRLRHIDG-REESFRIHHH 385
Score = 71.2 bits (174), Expect = 1e-13
Identities = 22/121 (18%), Positives = 40/121 (33%), Gaps = 14/121 (11%)
Query: 355 IYLKALSNEANELLPIFNKTSSKFYRATIPTGDWSSTQSACMEHRHPTISQSKTSSKHVP 414
+ ++ ++ + + +
Sbjct: 279 LIIRISDRGGGIAHKDLDRVMDYHFTTAEASTQDPR-------------ISPLFGHLDMH 325
Query: 415 SDAHTVPLAGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLKALSNEANELLPIFN 474
S + P+ G+G+GLP SR YA Y G + L S G+GTD + L+ + E I +
Sbjct: 326 SGGQSGPMHGFGFGLPTSRAYAEYLGGSLQLQSLQGIGTDVYLRLRHIDG-REESFRIHH 384
Query: 475 K 475
Sbjct: 385 H 385
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 59.1 bits (142), Expect = 2e-09
Identities = 67/501 (13%), Positives = 130/501 (25%), Gaps = 148/501 (29%)
Query: 32 IDFGLSASEEKSFMFLRK----------ELPVRLANIMKEIHLLPDNLLRMPSVGLVNEW 81
++ S E L+K +NI IH + L R+ L ++
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL----LKSKP 242
Query: 82 YAMSFDEILEFEKADSNSTDTLDKF---CKALVKIRNRH-SDVVQTMAQGVMELKDSHDV 137
Y +L + + + F CK L+ R + +D + + L
Sbjct: 243 YENCLL-VLL----NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT 297
Query: 138 DHQTENSIQYFLDRFYMSRISIRMLINQHTL-LFGDELTRGDSSLRHIGC-IDPQ-CDLI 194
E L L L +P+ +I
Sbjct: 298 LTPDE------------------------VKSLLLKYLDCRPQDLPREVLTTNPRRLSII 333
Query: 195 G-VVKDAYENARFLCEQYYLSSPELKVTEHNE--YEKGEPVRIIYVPSHLYHMLFELFKN 251
++D A + + K+T E EP ++ L +F
Sbjct: 334 AESIRD--GLATW---DNWKHVNCDKLTTIIESSLNVLEP----AEYRKMFDRLS-VFPP 383
Query: 252 SMRATVEHHTDTDVLPPIEV-------SVVRGKEDICVKMSDKGGGIPRSVTDMLFH--- 301
P + + + K+ + + +
Sbjct: 384 ------------SAHIPTILLSLIWFDVIKSDVMVVVNKLHKY-SLVEKQPKESTISIPS 430
Query: 302 -YMYSTAPQPSKSDAHTVPLAGYGYGLPISRLYARYFHGDIMLLSCDG-----LGTDAII 355
Y+ ++ H + Y + + D++ D +G
Sbjct: 431 IYLELKVKLENEYALHRSIVDHY-------NIPKTFDSDDLIPPYLDQYFYSHIG----- 478
Query: 356 Y-LKALSNEANELLPIFNK--TSSKFYRATI--PTGDWSSTQSACMEHRHPTISQSKTSS 410
+ LK + + E + +F +F I + W+++ S T+ Q K
Sbjct: 479 HHLKNIEHP--ERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSIL-----NTLQQLKFYK 531
Query: 411 KHV-PSDAHTVPLAGYGYGLPISRLYARYFHGDIM--LLSCDGLGTDAIIY-----LK-A 461
++ +D Y R I+ L + I L+ A
Sbjct: 532 PYICDNDPK----------------YERLV-NAILDFLPKI---EENLICSKYTDLLRIA 571
Query: 462 LSNEANELLPIFNKTSSKFYR 482
L E IF + + R
Sbjct: 572 LMAEDE---AIFEEAHKQVQR 589
Score = 30.2 bits (67), Expect = 2.0
Identities = 18/156 (11%), Positives = 45/156 (28%), Gaps = 39/156 (25%)
Query: 133 DSHDVDHQTENSIQYFLDRFYMSRISIRMLINQHTLLFGDELTRG---DSSLRHIGCIDP 189
++ + +Q ++ + F D F + + ++ + + HI +
Sbjct: 10 ETGEHQYQYKDILSVFEDAF------VDNFDCKDVQ----DMPKSILSKEEIDHI-IMSK 58
Query: 190 QCD-----LIGVVKDAYENA--RFLCEQYYLSSPELKVTEHNEYEKGEPVRIIYVPSHLY 242
L + E +F+ E ++ L E + + +Y+
Sbjct: 59 DAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQR-- 116
Query: 243 HMLFELFKNSMRATVEHHTDTDVLPPIEVSVVRGKE 278
+ + + D V VS R +
Sbjct: 117 --------DRL------YNDNQVFAKYNVS--RLQP 136
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase;
4.00A {Methanosarcina mazei}
Length = 621
Score = 57.1 bits (137), Expect = 6e-09
Identities = 35/160 (21%), Positives = 54/160 (33%), Gaps = 15/160 (9%)
Query: 238 PSHLYHMLFELFKNSMRATVEHHTDTDVLPPIEVSVVRGKED-ICVKMSDKGGGIPRSVT 296
P L + E N++ A E +LP I V V R D + V + D G GI R
Sbjct: 35 PRSLITTVKEAVDNALDACEEAG----ILPDILVQVERTGPDYVTVIIEDNGPGIVREQI 90
Query: 297 DMLFHYMYSTAPQPSKSDAHTVPLAGYGYGLPISRLYARYFHGD-IMLLSCDGLGTDAII 355
+F + S+ A G G+ + LYA+ G +LS A
Sbjct: 91 PKVFAKLLYG----SRFHALKQSRGQQGIGISAAVLYAQMTAGRHTKILSKTSPTAPAHY 146
Query: 356 YLKALSNEANELLPIFNKTSSKFYRA-----TIPTGDWSS 390
Y ++ NE + ++ F +
Sbjct: 147 YELMINTSTNEPDILVDEVRDWFRPHGTQIELEMRAAYVK 186
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix
two-turns helix; 2.00A {Sulfolobus shibatae} SCOP:
a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A*
1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Length = 471
Score = 46.3 bits (109), Expect = 1e-05
Identities = 25/127 (19%), Positives = 48/127 (37%), Gaps = 7/127 (5%)
Query: 241 LYHMLFELFKNSMRATVEHHTDTDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVTDMLF 300
LY + EL +NS+ AT H ++ I+ + ++ V + D G GIP F
Sbjct: 33 LYQTVRELIENSLDATDVHGILPNIKITID-LIDDARQIYKVNVVDNGIGIPPQEVPNAF 91
Query: 301 HYMYSTAPQPSKSDAHTVPLAGYGYGLPISRLYARYFHGD-IMLLSCDGLGTDAIIYLKA 359
+ ++ ++ YG G+ + LY++ I + + +
Sbjct: 92 GRVLYSSKYVNRQT-----RGMYGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLK 146
Query: 360 LSNEANE 366
+ NE
Sbjct: 147 IDINKNE 153
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein,
decatenation, ATPase, drug design, DNA-binding,
magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus
shibatae}
Length = 530
Score = 45.6 bits (107), Expect = 3e-05
Identities = 29/130 (22%), Positives = 48/130 (36%), Gaps = 13/130 (10%)
Query: 241 LYHMLFELFKNSMRATVEHHTDTDVLPPIEVSVVRGKED---ICVKMSDKGGGIPRSVTD 297
LY + EL +NS+ AT H +LP I++++ + V + D G GIP
Sbjct: 32 LYQTVRELIENSLDATDVH----GILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQEVP 87
Query: 298 MLFHYMYSTAPQPSKSDAHTVPLAGYGYGLPISRLYARYFHGD-IMLLSCDGLGTDAIIY 356
F + SK YG G+ + LY++ I + + +
Sbjct: 88 NAFGRVL----YSSKYVNRQTR-GMYGLGVKAAVLYSQMHQDKPIEIETSPVNSKRIYTF 142
Query: 357 LKALSNEANE 366
+ NE
Sbjct: 143 KLKIDINKNE 152
>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase,
two-component regulatory system; 1.57A {Thermotoga
maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A
Length = 152
Score = 41.8 bits (99), Expect = 8e-05
Identities = 28/172 (16%), Positives = 61/172 (35%), Gaps = 35/172 (20%)
Query: 190 QCDLIGVVKDAYENARFLCEQYYLSSPELK---VTEHNEYEKGEPVRIIYV-PSHLYHML 245
+ +L ++++ Y L +++ + E + + + + + +L
Sbjct: 5 EFNLNELIREVYV----------LFEEKIRKMNIDFCFETDNEDLR--VEADRTRIKQVL 52
Query: 246 FELFKNSMRATVEHHTDTDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVTDMLFHYMYS 305
L +N++ AT E+ I+++ + V + + G IP + + +F ++
Sbjct: 53 INLVQNAIEATGEN-------GKIKITSEDMYTKVRVSVWNSGPPIPEELKEKIFSPFFT 105
Query: 306 TAPQPSKSDAHTVPLAGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYL 357
T Q G G GL I R HG + G I +
Sbjct: 106 TKTQ------------GTGLGLSICRKIIEDEHGGKIWTENRENGVVFIFEI 145
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase,
phosphoprotein, transfe two-component regulatory system;
3.80A {Thermotoga maritima}
Length = 349
Score = 40.3 bits (95), Expect = 0.001
Identities = 23/110 (20%), Positives = 40/110 (36%), Gaps = 19/110 (17%)
Query: 248 LFKNSMRATVEHHTDTDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVTDMLFHYMYSTA 307
L +N++ AT E+ I+++ + V + + G IP + + +F ++T
Sbjct: 252 LVQNAIEATGEN-------GKIKITSEDMYTKVRVSVWNSGPPIPEELKEKIFSPFFTTK 304
Query: 308 PQPSKSDAHTVPLAGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYL 357
Q G G GL I R HG + G I +
Sbjct: 305 TQ------------GTGLGLSICRKIIEDEHGGKIWTENRENGVVFIFEI 342
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.4 bits (94), Expect = 0.001
Identities = 41/243 (16%), Positives = 71/243 (29%), Gaps = 102/243 (41%)
Query: 196 VVKDAYENA-RFLCEQYYLSSPEL------KVTEHNEYEKGEPVRIIYVPSHLYHMLFE- 247
+D + A + Y S ++ +T H EKG+ +R Y M+FE
Sbjct: 1641 AAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSA-----MIFET 1695
Query: 248 ----------LFK----NSMRATVEHHTDTDVL-------PPI---EVSVVRGKEDICVK 283
+FK +S T + +L P + E +
Sbjct: 1696 IVDGKLKTEKIFKEINEHSTSYTFRS--EKGLLSATQFTQPALTLMEKAAFE-------D 1746
Query: 284 MSDKGGGIPRSVTDMLF--H----YMYSTAPQPSKSDAHTVPLAGYGYGLPIS---RL-Y 333
+ K G IP D F H Y A LA + I + +
Sbjct: 1747 LKSK-GLIP---ADATFAGHSLGEY---AA------------LASLADVMSIESLVEVVF 1787
Query: 334 ARYFHGDIM---------------LLSCD------GLGTDAIIYL-KALSNEANELLPI- 370
R G M +++ + +A+ Y+ + + L+ I
Sbjct: 1788 YR---GMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIV 1844
Query: 371 -FN 372
+N
Sbjct: 1845 NYN 1847
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I
two-component histidine kinase, phosphoprotein; HET:
ADP; 2.03A {Geobacillus stearothermophilus}
Length = 244
Score = 39.1 bits (92), Expect = 0.002
Identities = 27/140 (19%), Positives = 52/140 (37%), Gaps = 18/140 (12%)
Query: 230 EPVRIIYVPSHLYHMLFELFKNSMRATVEHHTDTDVLPPIEVSVVRGKEDICVKMSDKGG 289
P +I L + KN++ A T ++V V + ++++D G
Sbjct: 113 APFSVIGEREKFRQCLLNVMKNAIEAMPNGGT-------LQVYVSIDNGRVLIRIADTGV 165
Query: 290 GIPRSVTDMLFHYMYSTAPQPSKSDAHTVPLAGYGYGLPISRLYARYFHGDIMLLSCDGL 349
G+ + + L ++T K + G G G+ + +G I + S
Sbjct: 166 GMTKEQLERLGEPYFTT-----K------GVKGTGLGMMVVYRIIESMNGTIRIESEIHK 214
Query: 350 GTDAIIYLKALSNEANELLP 369
GT IYL S+ ++ +
Sbjct: 215 GTTVSIYLPLASSPSSSTIS 234
>1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural
genomics, mycobacterium tuberculosis structural
proteomics project; 1.78A {Mycobacterium tuberculosis}
SCOP: d.122.1.3 PDB: 1ys3_A
Length = 150
Score = 36.0 bits (84), Expect = 0.007
Identities = 30/168 (17%), Positives = 58/168 (34%), Gaps = 32/168 (19%)
Query: 192 DLIGVVKDAYENARFLCEQYYLSSPELKVTEHNEYEKGEPVRIIYVPSHLYHMLFELFKN 251
D+ ++ A +A P+L V+ I+ +P+ L + N
Sbjct: 9 DITDLLDRAAHDAA-------RIYPDLDVS----LVPSPTCIIVGLPAGLRLAVDNAIAN 57
Query: 252 SMRATVEHHTDTDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVTDMLFH--YMYSTAPQ 309
+++ H +++S V + + + + D G G+P ++F STA
Sbjct: 58 AVK-----HGGA---TLVQLSAVSSRAGVEIAIDDNGSGVPEGERQVVFERFSRGSTASH 109
Query: 310 PSKSDAHTVPLAGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYL 357
G G GL + A+ G L + G ++ L
Sbjct: 110 S-----------GSGLGLALVAQQAQLHGGTASLENSPLGGARLVLRL 146
>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two
component system, transfera; 1.60A {Escherichia coli}
SCOP: d.122.1.3
Length = 160
Score = 36.0 bits (84), Expect = 0.010
Identities = 27/114 (23%), Positives = 43/114 (37%), Gaps = 17/114 (14%)
Query: 248 LFKNSMRATVEHHTD----TDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVTDMLFHYM 303
+ +N+++A + T + + R + + + D G GIP + D LF+ M
Sbjct: 56 IVRNALQALGPEGGEIILRTRTAFQLTLHGERYRLAARIDVEDNGPGIPPHLQDTLFYPM 115
Query: 304 YSTAPQPSKSDAHTVPLAGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYL 357
S G G GL I+R G I S G T+ +YL
Sbjct: 116 VSGREG------------GTGLGLSIARNLIDQHSGKIEFTSWPG-HTEFSVYL 156
>1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ));
histidine kinase, osmosensor, His-Asp phosphorelay
system, signal transduction; HET: ANP; NMR {Escherichia
coli BL21} SCOP: d.122.1.3
Length = 161
Score = 35.0 bits (81), Expect = 0.020
Identities = 23/92 (25%), Positives = 34/92 (36%), Gaps = 12/92 (13%)
Query: 268 PIEVSVVRGKEDICVKMSDKGGGIPRSVTDMLFHYMYSTAPQP-SKSD-AHTVPLAGYGY 325
I+VS ++ D G GI LF QP + D A T+ G G
Sbjct: 66 WIKVSSGTEPNRAWFQVEDDGPGIAPEQRKHLF--------QPFVRGDSARTIS--GTGL 115
Query: 326 GLPISRLYARYFHGDIMLLSCDGLGTDAIIYL 357
GL I + +G + L + + G +L
Sbjct: 116 GLAIVQRIVDNHNGMLELGTSERGGLSIRAWL 147
Score = 27.3 bits (61), Expect = 7.0
Identities = 9/36 (25%), Positives = 15/36 (41%)
Query: 424 GYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYL 459
G G GL I + +G + L + + G +L
Sbjct: 112 GTGLGLAIVQRIVDNHNGMLELGTSERGGLSIRAWL 147
>1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma,
sporulation, serine kinase, transcription; HET: ADP;
2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3
PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A*
Length = 145
Score = 34.2 bits (79), Expect = 0.035
Identities = 21/119 (17%), Positives = 43/119 (36%), Gaps = 20/119 (16%)
Query: 245 LFELFKNSMRATVEHHTDTDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVTDMLFHYMY 304
+ E N+ + H + D + +SV+ + + + D+G GIP + ++
Sbjct: 44 VSEAVTNA----IIHGYNNDPNGIVSISVIIEDGVVHLTVRDEGVGIP--DIEEARQPLF 97
Query: 305 STAPQPSKSDAHTVPLAGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLKALSNE 363
+T P L G G I F ++++ S GT + + +
Sbjct: 98 TTKP----------ELERSGMGFTI----MENFMDEVIVESEVNKGTTVYLKKHGIHHH 142
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory
system, hiska GHKL domain, structural genomics; 2.50A
{Caulobacter crescentus}
Length = 268
Score = 32.2 bits (74), Expect = 0.28
Identities = 18/83 (21%), Positives = 30/83 (36%), Gaps = 12/83 (14%)
Query: 269 IEVSVVRGKEDICVKMSDKGGGIPRSVTDMLFHYMYSTAPQPSKSDAHTVPLAGYGYGLP 328
+ +S R ++ + +SD G G+P V +F G G GL
Sbjct: 177 VTLSARRALGEVRLDVSDTGRGVPFHVQAHIFDRFV------------GRDRGGPGLGLA 224
Query: 329 ISRLYARYFHGDIMLLSCDGLGT 351
+ + G + L S G G+
Sbjct: 225 LVKALVELHGGWVALESEPGNGS 247
>3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat
fold, TR; HET: ATP; 1.61A {Bacillus subtilis}
Length = 177
Score = 31.1 bits (71), Expect = 0.43
Identities = 26/99 (26%), Positives = 43/99 (43%), Gaps = 8/99 (8%)
Query: 269 IEVSVVRGKEDICVKMSDKGGGIPRSVTDMLFHYMYSTAPQPSKSD-AHTVPLAGYGYGL 327
+ V +E + + + D+G GIP+ + +F Y + D A T L G G GL
Sbjct: 67 FSIDVNEEEELLYISVKDEGIGIPKKDVEKVFDRFY-------RVDKARTRKLGGTGLGL 119
Query: 328 PISRLYARYFHGDIMLLSCDGLGTDAIIYLKALSNEANE 366
I++ + GDI S +G GT L + ++
Sbjct: 120 AIAKEMVQAHGGDIWADSIEGKGTTITFTLPYKEEQEDD 158
>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2)
tetramer, riken structural genomics/proteomi initiative,
RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP:
c.67.1.7 PDB: 1wyt_B* 1wyv_B*
Length = 474
Score = 31.4 bits (72), Expect = 0.79
Identities = 8/44 (18%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Query: 84 MSF----DEILEFEKADSNSTDTLDKFCKALVKIRNRHSDVVQT 123
+ F E L E ++ + +TL+ F +A+ + + + ++
Sbjct: 404 VYFPLIVKEALMVEPTETEAKETLEAFAEAMGALLKKPKEWLEN 447
>3izx_A Structural protein VP3; cytoplasmic polyhedrosis virus, 3D
reconstruction, cryoem, F model; 3.10A {Bombyx mori
cypovirus 1} PDB: 3iz3_A 3j17_A* 3cnf_T
Length = 1058
Score = 30.7 bits (68), Expect = 1.2
Identities = 11/87 (12%), Positives = 23/87 (26%)
Query: 175 TRGDSSLRHIGCIDPQCDLIGVVKDAYENARFLCEQYYLSSPELKVTEHNEYEKGEPVRI 234
T + + + P +DA+ + Y+ P ++ VRI
Sbjct: 124 TNYTTPVGQLVVNAPAILNYSNPQDAFNSVFVALGIDYIDIPITNSNIFDDSSTPYNVRI 183
Query: 235 IYVPSHLYHMLFELFKNSMRATVEHHT 261
+ P+ H +
Sbjct: 184 WHAPTMTEVNHILALMRKSTLVSTHSS 210
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding,
cell inner MEM cell membrane, kinase, membrane,
nucleotide-binding; 2.50A {Escherichia coli}
Length = 222
Score = 29.8 bits (68), Expect = 1.6
Identities = 33/203 (16%), Positives = 76/203 (37%), Gaps = 43/203 (21%)
Query: 160 RM--LINQHTLLFGDELTRGDSSLRHIGCIDPQCDLIGVVKDAYENARFLCEQYYLSSPE 217
R L++Q LL L+R DS ++ + L +++ + + +Q + +
Sbjct: 50 RATRLVDQ--LL---TLSRLDSL-DNLQDVAE-IPLEDLLQSSVMDIYHTAQQ---AKID 99
Query: 218 LKVTEHNEYEKGEPVRIIYVPSHLYHMLFELFKNSMRATVEHHTDTDVLPP---IEVSVV 274
+++T + ++ P L ++ L N++R ++ P ++V++
Sbjct: 100 VRLTLN-----AHSIKRTGQPLLLSLLVRNLLDNAVR-----YS-----PQGSVVDVTLN 144
Query: 275 RGKEDICVKMSDKGGGIPRSVTDMLFHYMYSTAPQPSKSDAHTVPLAGYGYGLPISRLYA 334
++ V D G G+ + Y Q + G G GL I + A
Sbjct: 145 A--DNFIV--RDNGPGVTPEALARIGERFYRPPGQTA---------TGSGLGLSIVQRIA 191
Query: 335 RYFHGDIMLLSCDGLGTDAIIYL 357
+ ++ + + G +A +
Sbjct: 192 KLHGMNVEFGNAEQGGFEAKVSW 214
>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase;
HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB:
3cgz_A 3cgy_A
Length = 152
Score = 28.7 bits (65), Expect = 2.3
Identities = 21/133 (15%), Positives = 46/133 (34%), Gaps = 19/133 (14%)
Query: 225 EYEKGEPVRIIYVPSHLYHMLFELFKNSMRATVEHHTDTDVLPPIEVSVVRGKEDICVKM 284
+ + + + ++ + N+ + +E +E+S + E + + +
Sbjct: 29 SLDISPEISFVGEQNDFVEVMGNVLDNACKYCLEF---------VEISARQTDEHLYIVV 79
Query: 285 SDKGGGIPRSVTDMLFHYMYSTAPQPSKSDAHTVPLAGYGYGLPISRLYARYFHGDIMLL 344
D G GIP S +++F + D G G GL ++R + G I+
Sbjct: 80 EDDGPGIPLSKREVIFDRGQ-------RVDTLR---PGQGVGLAVAREITEQYEGKIVAG 129
Query: 345 SCDGLGTDAIIYL 357
G +
Sbjct: 130 ESMLGGARMEVIF 142
>3q87_A Putative uncharacterized protein ECU08_1170; SAM-methyltransferase,
methyltransferase, methylation, trans
activator-transferase complex; HET: SAM; 2.00A
{Encephalitozoon cuniculi}
Length = 125
Score = 27.3 bits (60), Expect = 5.4
Identities = 16/29 (55%), Positives = 18/29 (62%), Gaps = 6/29 (20%)
Query: 89 ILEFEKADSNSTDTLDKFCKALVKIRNRH 117
ILE EKA+SN DT D VKI N+H
Sbjct: 21 ILECEKAESNDVDTDD------VKIFNKH 43
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha
solenoid, regulatory PART LID, hydrolase, protein
binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Length = 394
Score = 28.3 bits (62), Expect = 5.5
Identities = 11/60 (18%), Positives = 24/60 (40%)
Query: 10 SVSKMLDFYSQFNPSPLSIKQFIDFGLSASEEKSFMFLRKELPVRLANIMKEIHLLPDNL 69
V ++D + + Q + ++++ FLR+ L RL + + L + L
Sbjct: 60 LVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQSLEARLIALYFDTALYTEAL 119
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl
MAD, two-component systems, transferase; HET: ADP; 1.9A
{Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB:
3dge_A*
Length = 258
Score = 27.9 bits (63), Expect = 7.7
Identities = 21/90 (23%), Positives = 38/90 (42%), Gaps = 8/90 (8%)
Query: 269 IEVSVVRGKEDICVKMSDKGGGIPRSVTDMLFHYMYSTAPQPSKSD-AHTVPLAGYGYGL 327
++V + + + + D G GIP D +F Y + D + T + G G GL
Sbjct: 163 VKVILDEKDGGVLIIVEDNGIGIPDHAKDRIFEQFY-------RVDSSLTYEVPGTGLGL 215
Query: 328 PISRLYARYFHGDIMLLSCDGLGTDAIIYL 357
I++ G I + S G G+ +++
Sbjct: 216 AITKEIVELHGGRIWVESEVGKGSRFFVWI 245
>3ok8_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 2;
I-BAR, protein binding; 2.25A {Mus musculus}
Length = 222
Score = 27.5 bits (60), Expect = 9.5
Identities = 16/137 (11%), Positives = 45/137 (32%), Gaps = 12/137 (8%)
Query: 11 VSKMLDFYSQFNPSPLSIKQFID----FGLSASEEKSFMFLRKELPVRLANIMKEIHLLP 66
V ++ F+ + + + G A + + L + L V++++ + ++
Sbjct: 33 VYLGNNYLRAFHALSEAAEVYFSAIQKIGEQALQSSTSQILGEIL-VQMSDTQRHLNSDL 91
Query: 67 DNLLRMPSVGLVNE-------WYAMSFDEILEFEKADSNSTDTLDKFCKALVKIRNRHSD 119
+ +++ L+ D +E + L+K L ++ +
Sbjct: 92 EVVVQTFHGDLLQHMEKNTKLDMQFIKDSCQHYEIEYRHRAANLEKCMSELWRMERKRDK 151
Query: 120 VVQTMAQGVMELKDSHD 136
+ M + V L
Sbjct: 152 NAREMKESVNRLHAQMQ 168
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.136 0.406
Gapped
Lambda K H
0.267 0.0799 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,357,901
Number of extensions: 441384
Number of successful extensions: 865
Number of sequences better than 10.0: 1
Number of HSP's gapped: 834
Number of HSP's successfully gapped: 40
Length of query: 482
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 385
Effective length of database: 3,993,456
Effective search space: 1537480560
Effective search space used: 1537480560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.4 bits)