RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14548
(482 letters)
>d1y8oa1 a.29.5.1 (A:13-176) Pyruvate dehydrogenase kinase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 164
Score = 218 bits (557), Expect = 4e-70
Identities = 100/162 (61%), Positives = 121/162 (74%), Gaps = 1/162 (0%)
Query: 13 KMLDFYSQFNPSPLSIKQFIDFGLS-ASEEKSFMFLRKELPVRLANIMKEIHLLPDNLLR 71
K ++ YS+F+PSPLSIKQF+DFG A E+ S+MFLRKELPVRLAN M+E++LLPDNLL
Sbjct: 2 KQIERYSRFSPSPLSIKQFLDFGRDNACEKTSYMFLRKELPVRLANTMREVNLLPDNLLN 61
Query: 72 MPSVGLVNEWYAMSFDEILEFEKADSNSTDTLDKFCKALVKIRNRHSDVVQTMAQGVMEL 131
PSVGLV WY SF E+LE+E LD F + L+K+RNRH+DVV TMAQGV+E
Sbjct: 62 RPSVGLVQSWYMQSFLELLEYENKSPEDPQVLDNFLQVLIKVRNRHNDVVPTMAQGVIEY 121
Query: 132 KDSHDVDHQTENSIQYFLDRFYMSRISIRMLINQHTLLFGDE 173
K+ D +IQYFLDRFY +RIS RMLINQHTLLFG +
Sbjct: 122 KEKFGFDPFISTNIQYFLDRFYTNRISFRMLINQHTLLFGGD 163
>d1jm6a1 a.29.5.1 (A:1003-1169) Pyruvate dehydrogenase kinase {Rat
(Rattus norvegicus), isozyme 2 [TaxId: 10116]}
Length = 167
Score = 216 bits (552), Expect = 2e-69
Identities = 101/163 (61%), Positives = 123/163 (75%), Gaps = 1/163 (0%)
Query: 9 ASVSKMLDFYSQFNPSPLSIKQFIDFGLSASEEK-SFMFLRKELPVRLANIMKEIHLLPD 67
A K ++ +S+F+PSPLS+KQF+DFG S + EK SF FLR+ELPVRLANIMKEI+LLPD
Sbjct: 4 AGAPKYIEHFSKFSPSPLSMKQFLDFGSSNACEKTSFTFLRQELPVRLANIMKEINLLPD 63
Query: 68 NLLRMPSVGLVNEWYAMSFDEILEFEKADSNSTDTLDKFCKALVKIRNRHSDVVQTMAQG 127
+L PSV LV WY S +I+EF D TL +F ALV IRNRH+DVV TMAQG
Sbjct: 64 RVLSTPSVQLVQSWYVQSLLDIMEFLDKDPEDHRTLSQFTDALVTIRNRHNDVVPTMAQG 123
Query: 128 VMELKDSHDVDHQTENSIQYFLDRFYMSRISIRMLINQHTLLF 170
V+E KD++ D + +IQYFLDRFY+SRISIRMLINQHTL+F
Sbjct: 124 VLEYKDTYGDDPVSNQNIQYFLDRFYLSRISIRMLINQHTLIF 166
>d1gkza1 a.29.5.1 (A:38-185) Branched-chain alpha-ketoacid
dehydrogenase kinase (BCK) {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 148
Score = 178 bits (454), Expect = 4e-55
Identities = 43/151 (28%), Positives = 76/151 (50%), Gaps = 9/151 (5%)
Query: 26 LSIKQFIDFGLSASEE---KSFMFLRKELPVRLANIMKEIHLLPDNLLRMPSVGLVNEWY 82
L+ + G S KS +L++ELPVR+A+ +K LP + P++ V+E Y
Sbjct: 3 LTPTMMLYSGRSQDGSHLLKSGRYLQQELPVRIAHRIKGFRSLPFIIGCNPTILHVHELY 62
Query: 83 AMSFDEILEFEKADSNSTDTLDKFCKALVKIRNRHSDVVQTMAQGVMELKDSHDVDHQTE 142
+F ++ +F ++C+ + ++ + H DVV +A+G+ E + + E
Sbjct: 63 IRAFQKLTDFPPIKDQ--ADEAQYCQLVRQLLDDHKDVVTLLAEGLRESRK----HIEDE 116
Query: 143 NSIQYFLDRFYMSRISIRMLINQHTLLFGDE 173
++YFLD+ SR+ IRML H L D+
Sbjct: 117 KLVRYFLDKTLTSRLGIRMLATHHLALHEDK 147
>d1jm6a2 d.122.1.4 (A:1177-1366) Pyruvate dehydrogenase kinase {Rat
(Rattus norvegicus), isozyme 2 [TaxId: 10116]}
Length = 190
Score = 179 bits (455), Expect = 1e-54
Identities = 109/190 (57%), Positives = 143/190 (75%), Gaps = 1/190 (0%)
Query: 182 RHIGCIDPQCDLIGVVKDAYENARFLCEQYYLSSPELKVTEHNEYEKGEPVRIIYVPSHL 241
+HIG IDP C + VVKDAY+ A+ LC++YY++SP+L++ E N +P+ ++YVPSHL
Sbjct: 2 KHIGSIDPNCSVSDVVKDAYDMAKLLCDKYYMASPDLEIQEVNATNATQPIHMVYVPSHL 61
Query: 242 YHMLFELFKNSMRATVEHHTDTDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVTDMLFH 301
YHMLFELFKN+MRATVE H + LPPI++ V G+ED+ +KMSD+GGG+P + LF
Sbjct: 62 YHMLFELFKNAMRATVESHESSLTLPPIKIMVALGEEDLSIKMSDRGGGVPLRKIERLFS 121
Query: 302 YMYSTAPQPSKSDAHTVPLAGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLKALS 361
YMYSTAP P PLAG+GYGLPISRLYA+YF GD+ L S +G GTDA+IYLKALS
Sbjct: 122 YMYSTAPTPQPGT-GGTPLAGFGYGLPISRLYAKYFQGDLQLFSMEGFGTDAVIYLKALS 180
Query: 362 NEANELLPIF 371
++ E LP++
Sbjct: 181 TDSVERLPVY 190
Score = 57.8 bits (139), Expect = 2e-10
Identities = 44/122 (36%), Positives = 60/122 (49%), Gaps = 4/122 (3%)
Query: 353 AIIYLKALSNEANELLPIFNKTSSKFYRATIPTGDWSSTQSACMEHRHPTISQSKTSSKH 412
A+ + L PI + +I D + + S+
Sbjct: 72 AMRATVESHESSLTLPPIKIMVALGEEDLSIKMSD---RGGGVPLRKIERLFSYMYSTAP 128
Query: 413 VPSD-AHTVPLAGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLKALSNEANELLP 471
P PLAG+GYGLPISRLYA+YF GD+ L S +G GTDA+IYLKALS ++ E LP
Sbjct: 129 TPQPGTGGTPLAGFGYGLPISRLYAKYFQGDLQLFSMEGFGTDAVIYLKALSTDSVERLP 188
Query: 472 IF 473
++
Sbjct: 189 VY 190
>d1gkza2 d.122.1.4 (A:186-378) Branched-chain alpha-ketoacid
dehydrogenase kinase (BCK) {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 193
Score = 120 bits (301), Expect = 2e-32
Identities = 57/196 (29%), Positives = 96/196 (48%), Gaps = 21/196 (10%)
Query: 183 HIGCIDPQCDLIGVVKDAYENARFLCEQYYLSSPELKVTEHNEYEKGEPVRIIYVPSHLY 242
+G I + +++ + AR LCE Y ++P + R ++P L
Sbjct: 2 FVGIICTRLSPKKIIEKWVDFARRLCEHKYGNAPRV------RINGHVAARFPFIPMPLD 55
Query: 243 HMLFELFKNSMRATVEHHTDTDV-LPPIEVSVVRGKEDICVKMSDKGGGIPRSVTDMLFH 301
++L EL KN+MRAT+E H DT +P + +++ D+ +++SD+GGGI D +
Sbjct: 56 YILPELLKNAMRATMESHLDTPYNVPDVVITIANNDVDLIIRISDRGGGIAHKDLDRVMD 115
Query: 302 YMYSTAPQPSK--------------SDAHTVPLAGYGYGLPISRLYARYFHGDIMLLSCD 347
Y ++TA ++ S + P+ G+G+GLP SR YA Y G + L S
Sbjct: 116 YHFTTAEASTQDPRISPLFGHLDMHSGGQSGPMHGFGFGLPTSRAYAEYLGGSLQLQSLQ 175
Query: 348 GLGTDAIIYLKALSNE 363
G+GTD + L+ +
Sbjct: 176 GIGTDVYLRLRHIDGR 191
Score = 46.4 bits (109), Expect = 2e-06
Identities = 20/51 (39%), Positives = 29/51 (56%)
Query: 415 SDAHTVPLAGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYLKALSNE 465
S + P+ G+G+GLP SR YA Y G + L S G+GTD + L+ +
Sbjct: 141 SGGQSGPMHGFGFGLPTSRAYAEYLGGSLQLQSLQGIGTDVYLRLRHIDGR 191
>d1y8oa2 d.122.1.4 (A:177-301) Pyruvate dehydrogenase kinase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 125
Score = 89.6 bits (221), Expect = 3e-22
Identities = 68/120 (56%), Positives = 87/120 (72%), Gaps = 1/120 (0%)
Query: 182 RHIGCIDPQCDLIGVVKDAYENARFLCEQYYLSSPELKVTEHNEYEKGEPVRIIYVPSHL 241
+HIG IDP C++ VVKDAYE A+ LCEQYYL +PEL+V E N +P++++YVPSHL
Sbjct: 6 KHIGSIDPTCNVADVVKDAYETAKMLCEQYYLVAPELEVEEFNAKAPDKPIQVVYVPSHL 65
Query: 242 YHMLFELFKNSMRATVEHHTDTDV-LPPIEVSVVRGKEDICVKMSDKGGGIPRSVTDMLF 300
+HMLFELFKNSMRATVE + D P ++ V GKED+ +K+SD GGG+P D LF
Sbjct: 66 FHMLFELFKNSMRATVELYEDRKEGYPAVKTLVTLGKEDLSIKISDLGGGVPLRKIDRLF 125
>d2c2aa2 d.122.1.3 (A:321-481) Sensor histidine kinase TM0853
{Thermotoga maritima [TaxId: 2336]}
Length = 161
Score = 58.8 bits (142), Expect = 5e-11
Identities = 33/166 (19%), Positives = 59/166 (35%), Gaps = 17/166 (10%)
Query: 192 DLIGVVKDAYENARFLCEQYYLSSPELKVTEHNEYEKGEPVRIIYVPSHLYHMLFELFKN 251
DL +V+ A + + V E PV P+ + +L L N
Sbjct: 8 DLCDLVESAVNAIKEFASSH-------NVNVLFESNVPCPVEAYIDPTRIRQVLLNLLNN 60
Query: 252 SMRATVEHHTDTDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVTDMLFHYMYSTAPQPS 311
++ + + D V ++ + + + D G GIP D +F Y
Sbjct: 61 GVKYSKKDAPDKYVKVILD----EKDGGVLIIVEDNGIGIPDHAKDRIFEQFYRV----- 111
Query: 312 KSDAHTVPLAGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYL 357
+ T + G G GL I++ G I + S G G+ +++
Sbjct: 112 -DSSLTYEVPGTGLGLAITKEIVELHGGRIWVESEVGKGSRFFVWI 156
Score = 29.9 bits (67), Expect = 0.34
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 424 GYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYL 459
G G GL I++ G I + S G G+ +++
Sbjct: 121 GTGLGLAITKEIVELHGGRIWVESEVGKGSRFFVWI 156
>d1ysra1 d.122.1.3 (A:299-446) Sensor-type histidine kinase PrrB
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 148
Score = 53.3 bits (128), Expect = 3e-09
Identities = 26/166 (15%), Positives = 55/166 (33%), Gaps = 28/166 (16%)
Query: 192 DLIGVVKDAYENARFLCEQYYLSSPELKVTEHNEYEKGEPVRIIYVPSHLYHMLFELFKN 251
D+ ++ A +A + P+L V I+ +P+ L + N
Sbjct: 7 DITDLLDRAAHDAARI-------YPDLDV----SLVPSPTCIIVGLPAGLRLAVDNAIAN 55
Query: 252 SMRATVEHHTDTDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVTDMLFHYMYSTAPQPS 311
+++ +++S V + + + + D G G+P ++F +
Sbjct: 56 AVKHGGATL--------VQLSAVSSRAGVEIAIDDNGSGVPEGERQVVFERFSRGSTASH 107
Query: 312 KSDAHTVPLAGYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYL 357
G G GL + A+ G L + G ++ L
Sbjct: 108 S---------GSGLGLALVAQQAQLHGGTASLENSPLGGARLVLRL 144
Score = 31.0 bits (70), Expect = 0.15
Identities = 9/36 (25%), Positives = 14/36 (38%)
Query: 424 GYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYL 459
G G GL + A+ G L + G ++ L
Sbjct: 109 GSGLGLALVAQQAQLHGGTASLENSPLGGARLVLRL 144
>d1bxda_ d.122.1.3 (A:) Histidine kinase domain of the osmosensor
EnvZ {Escherichia coli [TaxId: 562]}
Length = 161
Score = 52.6 bits (126), Expect = 7e-09
Identities = 21/128 (16%), Positives = 37/128 (28%), Gaps = 17/128 (13%)
Query: 230 EPVRIIYVPSHLYHMLFELFKNSMRATVEHHTDTDVLPPIEVSVVRGKEDICVKMSDKGG 289
+ + P + + + N+ R I+VS ++ D G
Sbjct: 37 GSIEVKMHPLSIKRAVANMVVNAARYGNGW---------IKVSSGTEPNRAWFQVEDDGP 87
Query: 290 GIPRSVTDMLFHYMYSTAPQPSKSDAHTVPLAGYGYGLPISRLYARYFHGDIMLLSCDGL 349
GI LF + S G GL I + +G + L + +
Sbjct: 88 GIAPEQRKHLFQPFVRGDSARTISG--------TGLGLAIVQRIVDNHNGMLELGTSERG 139
Query: 350 GTDAIIYL 357
G +L
Sbjct: 140 GLSIRAWL 147
Score = 29.5 bits (66), Expect = 0.59
Identities = 8/34 (23%), Positives = 14/34 (41%)
Query: 426 GYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYL 459
G GL I + +G + L + + G +L
Sbjct: 114 GLGLAIVQRIVDNHNGMLELGTSERGGLSIRAWL 147
>d1id0a_ d.122.1.3 (A:) Histidine kinase PhoQ domain {Escherichia
coli [TaxId: 562]}
Length = 146
Score = 49.1 bits (117), Expect = 9e-08
Identities = 20/133 (15%), Positives = 44/133 (33%), Gaps = 19/133 (14%)
Query: 225 EYEKGEPVRIIYVPSHLYHMLFELFKNSMRATVEHHTDTDVLPPIEVSVVRGKEDICVKM 284
+ + + + ++ + N+ + +E +E+S + E + + +
Sbjct: 29 SLDISPEISFVGEQNDFVEVMGNVLDNACKYCLEF---------VEISARQTDEHLYIVV 79
Query: 285 SDKGGGIPRSVTDMLFHYMYSTAPQPSKSDAHTVPLAGYGYGLPISRLYARYFHGDIMLL 344
D G GIP S +++F G G GL ++R + G I+
Sbjct: 80 EDDGPGIPLSKREVIFDRGQRVDTLRP----------GQGVGLAVAREITEQYEGKIVAG 129
Query: 345 SCDGLGTDAIIYL 357
G +
Sbjct: 130 ESMLGGARMEVIF 142
Score = 29.8 bits (67), Expect = 0.32
Identities = 8/36 (22%), Positives = 13/36 (36%)
Query: 424 GYGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYL 459
G G GL ++R + G I+ G +
Sbjct: 107 GQGVGLAVAREITEQYEGKIVAGESMLGGARMEVIF 142
>d1r62a_ d.122.1.3 (A:) Nitrogen regulation protein NtrB, C-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 156
Score = 37.1 bits (85), Expect = 0.001
Identities = 30/124 (24%), Positives = 47/124 (37%), Gaps = 17/124 (13%)
Query: 238 PSHLYHMLFELFKNSMRAT----VEHHTDTDVLPPIEVSVVRGKEDICVKMSDKGGGIPR 293
P + +L + +N+++A E T + + R + + + D G GIP
Sbjct: 42 PDQIEQVLLNIVRNALQALGPEGGEIILRTRTAFQLTLHGERYRLAARIDVEDNGPGIPP 101
Query: 294 SVTDMLFHYMYSTAPQPSKSDAHTVPLAGYGYGLPISRLYARYFHGDIMLLSCDGLGTDA 353
+ D LF+ M S G G GL I+R G I S G T+
Sbjct: 102 HLQDTLFYPMVSGREG------------GTGLGLSIARNLIDQHSGKIEFTSWPG-HTEF 148
Query: 354 IIYL 357
+YL
Sbjct: 149 SVYL 152
>d1i58a_ d.122.1.3 (A:) Histidine kinase CheA {Thermotoga maritima
[TaxId: 2336]}
Length = 189
Score = 31.3 bits (69), Expect = 0.15
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 10/136 (7%)
Query: 222 EHNEYEKGEPVRIIYVPSHLYHMLFELFKNSMRATVEHHTDTDVLPPIEVSVVRGKEDIC 281
+H K E + P + N++ V D E + + E
Sbjct: 61 DHGIEPKEERIAKGKPPIGTLILSARHEGNNVVIEV---EDDGRGIDKEKIIRKAIEKGL 117
Query: 282 VKMSDKGGGIPRSVTDMLFHYMYSTAPQPSKSDAHTVPLAGYGYGLPISRLYARYFHGDI 341
+ S + + + LF +ST + S+ G G+ + + +G I
Sbjct: 118 IDESKAATLSDQEILNFLFVPGFSTKEKVSEVSGR-------GVGMDVVKNVVESLNGSI 170
Query: 342 MLLSCDGLGTDAIIYL 357
+ S GT I L
Sbjct: 171 SIESEKDKGTKVTIRL 186
Score = 27.4 bits (59), Expect = 3.4
Identities = 9/35 (25%), Positives = 14/35 (40%)
Query: 425 YGYGLPISRLYARYFHGDIMLLSCDGLGTDAIIYL 459
G G+ + + +G I + S GT I L
Sbjct: 152 RGVGMDVVKNVVESLNGSISIESEKDKGTKVTIRL 186
>d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2
(P-protein) {Thermus thermophilus [TaxId: 274]}
Length = 471
Score = 29.4 bits (65), Expect = 1.2
Identities = 7/44 (15%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 84 MSFDEILE----FEKADSNSTDTLDKFCKALVKIRNRHSDVVQT 123
+ F I++ E ++ + +TL+ F +A+ + + + ++
Sbjct: 403 VYFPLIVKEALMVEPTETEAKETLEAFAEAMGALLKKPKEWLEN 446
>d1th8a_ d.122.1.3 (A:) Anti-sigma factor spoIIab {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 139
Score = 27.8 bits (61), Expect = 1.6
Identities = 16/101 (15%), Positives = 33/101 (32%), Gaps = 16/101 (15%)
Query: 251 NSMRATVEHHTDTDVLPPIEVSVVRGKEDICVKMSDKGGGIPRSVTDMLFHYMYSTAPQP 310
++ + H + D + +SV+ + + + D+G GIP + +
Sbjct: 46 EAVTNAIIHGYNNDPNGIVSISVIIEDGVVHLTVRDEGVGIPDIEEARQPLFTTKPELE- 104
Query: 311 SKSDAHTVPLAGYGYGLPISRLYARYFHGDIMLLSCDGLGT 351
G G I F ++++ S GT
Sbjct: 105 -----------RSGMGFTI----MENFMDEVIVESEVNKGT 130
>d1uwsa_ c.1.8.4 (A:) beta-Glycosidase {Archaeon Sulfolobus
solfataricus [TaxId: 2287]}
Length = 489
Score = 27.9 bits (61), Expect = 3.2
Identities = 16/111 (14%), Positives = 37/111 (33%), Gaps = 4/111 (3%)
Query: 135 HDVDHQTENSIQYFLDRFYMSRISIRMLINQHTLLFGDELTRGDSSLRHIGCIDPQCDLI 194
V + + + +Y + ++ + L G +S+ G
Sbjct: 304 KIVRDDLKGRLDWIGVNYYTRTV-VKRTEKGYVSLGGYGHGCERNSVSLAGLPTSDFGWE 362
Query: 195 GVVKDAYENARFLCEQYYLSSPELKVTEHNEYEKGEPVRIIYVPSHLYHML 245
+ Y+ +Y+ + VTE+ + + R Y+ SH+Y +
Sbjct: 363 FFPEGLYDVLTKYWNRYH---LYMYVTENGIADDADYQRPYYLVSHVYQVH 410
>d2c3fa1 b.108.1.5 (A:7-336) Phage-associated hyaluronidase, HylP1
{Streptococcus pyogenes [TaxId: 1314]}
Length = 330
Score = 27.7 bits (61), Expect = 3.6
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 7/72 (9%)
Query: 347 DGLGTDAI-IYLKALSNEANELLPIFNKTSSKFYRATIPTGDW----SSTQSACMEHRHP 401
+G GT A IY+ + S +LL I N + KFY G + +S ++ + P
Sbjct: 248 NGAGTAAQGIYINSTSGTTGKLLRIRNLSDDKFYVK--SDGGFYAKETSQIDGNLKLKDP 305
Query: 402 TISQSKTSSKHV 413
T + + +V
Sbjct: 306 TANDHAATKAYV 317
>d1kija2 d.122.1.2 (A:9-220) DNA gyrase B {Thermus thermophilus
[TaxId: 274]}
Length = 212
Score = 26.9 bits (59), Expect = 4.4
Identities = 13/104 (12%), Positives = 42/104 (40%), Gaps = 8/104 (7%)
Query: 241 LYHMLFELFKNSMRATVEHHTDTDVLPPIE---VSVVRGKEDICVKMSDKGGGIPRSVTD 297
+H+ E+ N++ + + ++ E ++V I V + + G + +
Sbjct: 27 YHHLFKEILDNAVDEALAGYATEILVRLNEDGSLTVEDNGRGIPVDLMPEEG---KPAVE 83
Query: 298 MLFHYMYSTAPQPSKSDAHTVPLAGYGYGLPISRLYARYFHGDI 341
++++ ++S + A+ V +G G + + + ++
Sbjct: 84 VIYNTLHSGG--KFEQGAYKVSGGLHGVGASVVNALSEWTVVEV 125
>d1g5aa2 c.1.8.1 (A:1-554) Amylosucrase {Neisseria polysaccharea
[TaxId: 489]}
Length = 554
Score = 27.6 bits (60), Expect = 4.5
Identities = 13/40 (32%), Positives = 17/40 (42%), Gaps = 6/40 (15%)
Query: 332 LYARYFHGDIMLLSCDGLGTDAIIYLKALSNEANELLPIF 371
Y F GD+ GL D I Y + L L+P+F
Sbjct: 103 CYVDLFAGDL-----KGL-KDKIPYFQELGLTYLHLMPLF 136
Score = 27.6 bits (60), Expect = 4.5
Identities = 13/40 (32%), Positives = 17/40 (42%), Gaps = 6/40 (15%)
Query: 434 LYARYFHGDIMLLSCDGLGTDAIIYLKALSNEANELLPIF 473
Y F GD+ GL D I Y + L L+P+F
Sbjct: 103 CYVDLFAGDL-----KGL-KDKIPYFQELGLTYLHLMPLF 136
>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 445
Score = 26.8 bits (58), Expect = 5.8
Identities = 17/116 (14%), Positives = 32/116 (27%), Gaps = 3/116 (2%)
Query: 1 MRFTLRRCASVSKMLDFYSQFNPSPLSIKQFIDFGLSASEEKSFMFLRKELPVRLANIMK 60
+ L++ A + NP L++ G + V A +
Sbjct: 326 LSTQLKKLAEAHNERLLQTPHNPISLAMTLKTIDGHHDKAVTQLGSMLFTRQVSGARAVP 385
Query: 61 EIHLLPDNLLRMPSVGLVNEWYAMSFDEILEFEKADSNSTDTLDKFCKALVKIRNR 116
++ + + Y ++ L A +D F K L K N
Sbjct: 386 LGNVQTVSGHTFRGFMSHADNYPCAY---LNAAAAIGMKMQDVDLFIKRLDKCLNI 438
>d1y2oa1 a.238.1.3 (A:1-248) BAP2/IRSp53 N-terminal domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 248
Score = 26.5 bits (58), Expect = 6.3
Identities = 17/134 (12%), Positives = 39/134 (29%), Gaps = 11/134 (8%)
Query: 53 VRLANIMKEIHLLPDNL-------LRMPSVGLVNEWYAMSFDEILEFEKADSNSTDTLDK 105
++A + ++I + + L V + +++ + D LDK
Sbjct: 77 FQMAEVHRQIQNQLEEMLKSFHNELLTQLEQKVELDSRYLSAALKKYQTEQRSKGDALDK 136
Query: 106 FCKALVKIRNRHSDVVQTMAQGVMELKDSHDVD---HQTENSIQYFLDRF-YMSRISIRM 161
L K+R + EL+ + + EN + R
Sbjct: 137 CQAELKKLRKKSQGSKNPQKYSDKELQYIDAISNKQGELENYVSDGYKTALTEERRRFCF 196
Query: 162 LINQHTLLFGDELT 175
L+ + + +
Sbjct: 197 LVEKQCAVAKNSAA 210
>d2gm3a1 c.26.2.4 (A:5-175) Putative ethylene-responsive protein
AT3g01520/F4P13_7 {Thale cress (Arabidopsis thaliana)
[TaxId: 3702]}
Length = 171
Score = 26.0 bits (56), Expect = 9.3
Identities = 8/55 (14%), Positives = 18/55 (32%), Gaps = 6/55 (10%)
Query: 225 EYEKGEPVRIIYVPSHLYHMLFELFKNSMRATVEHHTDTDVLPPIEVSVVRGKED 279
+ K + V S ++F ++ A H + V+ ++ D
Sbjct: 114 QEVKRVRPDFLVVGSRGLGRFQKVFVGTVSAFCVKHAECPVM------TIKRNAD 162
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.136 0.406
Gapped
Lambda K H
0.267 0.0442 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,796,845
Number of extensions: 84154
Number of successful extensions: 283
Number of sequences better than 10.0: 1
Number of HSP's gapped: 269
Number of HSP's successfully gapped: 31
Length of query: 482
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 393
Effective length of database: 1,185,626
Effective search space: 465951018
Effective search space used: 465951018
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.7 bits)