BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14549
(117 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Z68|A Chain A, Crystal Structure Of Human Fibroblast Activation Protein
Alpha
pdb|1Z68|B Chain B, Crystal Structure Of Human Fibroblast Activation Protein
Alpha
Length = 719
Score = 108 bits (270), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 49/117 (41%), Positives = 81/117 (69%), Gaps = 2/117 (1%)
Query: 1 YGGPGSNIISDRFSIDFHTYLVSKRHVIVVHIDARGSAYRSKEQEHSVYRNLGRYEIADQ 60
YGGP S + F++++ +YL SK +++ +D RG+A++ + ++VYR LG YE+ DQ
Sbjct: 503 YGGPCSQSVRSVFAVNWISYLASKEGMVIALVDGRGTAFQGDKLLYAVYRKLGVYEVEDQ 562
Query: 61 IAVVKYLTERFQFIDKTKVGIWGWSYGGFATAMVLATDTQNVFKCGVSVAPVTNFLY 117
I V+ E FID+ ++ IWGWSYGG+ +++ LA+ T +FKCG++VAPV+++ Y
Sbjct: 563 ITAVRKFIE-MGFIDEKRIAIWGWSYGGYVSSLALASGT-GLFKCGIAVAPVSSWEY 617
>pdb|1ORV|A Chain A, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26)
pdb|1ORV|B Chain B, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26)
pdb|1ORV|C Chain C, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26)
pdb|1ORV|D Chain D, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26)
pdb|1ORW|A Chain A, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Peptidomimetic Inhibitor
pdb|1ORW|B Chain B, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Peptidomimetic Inhibitor
pdb|1ORW|C Chain C, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Peptidomimetic Inhibitor
pdb|1ORW|D Chain D, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Peptidomimetic Inhibitor
pdb|2BUA|A Chain A, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Low Molecular Weight Inhibitor.
pdb|2BUA|B Chain B, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Low Molecular Weight Inhibitor.
pdb|2BUA|C Chain C, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Low Molecular Weight Inhibitor.
pdb|2BUA|D Chain D, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Low Molecular Weight Inhibitor.
pdb|2BUC|A Chain A, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Tetrahydroisoquinoline
Inhibitor
pdb|2BUC|B Chain B, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Tetrahydroisoquinoline
Inhibitor
pdb|2BUC|C Chain C, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Tetrahydroisoquinoline
Inhibitor
pdb|2BUC|D Chain D, Crystal Structure Of Porcine Dipeptidyl Peptidase Iv
(Cd26) In Complex With A Tetrahydroisoquinoline
Inhibitor
pdb|2AJ8|A Chain A, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
7-Benzyl-1,3-
Dimethyl-8-Piperazin-1-Yl-3,7-Dihydro-Purine-2,6-Dione
(Bdpx)
pdb|2AJ8|B Chain B, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
7-Benzyl-1,3-
Dimethyl-8-Piperazin-1-Yl-3,7-Dihydro-Purine-2,6-Dione
(Bdpx)
pdb|2AJ8|C Chain C, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
7-Benzyl-1,3-
Dimethyl-8-Piperazin-1-Yl-3,7-Dihydro-Purine-2,6-Dione
(Bdpx)
pdb|2AJ8|D Chain D, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
7-Benzyl-1,3-
Dimethyl-8-Piperazin-1-Yl-3,7-Dihydro-Purine-2,6-Dione
(Bdpx)
pdb|2AJB|A Chain A, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With The
Tripeptide Tert-Butyl-Gly-L-Pro-L-Ile (Tbu-Gpi)
pdb|2AJB|B Chain B, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With The
Tripeptide Tert-Butyl-Gly-L-Pro-L-Ile (Tbu-Gpi)
pdb|2AJB|C Chain C, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With The
Tripeptide Tert-Butyl-Gly-L-Pro-L-Ile (Tbu-Gpi)
pdb|2AJB|D Chain D, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With The
Tripeptide Tert-Butyl-Gly-L-Pro-L-Ile (Tbu-Gpi)
pdb|2AJC|A Chain A, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
4-(2- Aminoethyl)-Benzene Sulphonyl Fluoride (Aebsf)
pdb|2AJC|B Chain B, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
4-(2- Aminoethyl)-Benzene Sulphonyl Fluoride (Aebsf)
pdb|2AJC|C Chain C, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
4-(2- Aminoethyl)-Benzene Sulphonyl Fluoride (Aebsf)
pdb|2AJC|D Chain D, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
4-(2- Aminoethyl)-Benzene Sulphonyl Fluoride (Aebsf)
pdb|2AJD|A Chain A, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
L-Pro-Boro-L- Pro (Boropro)
pdb|2AJD|B Chain B, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
L-Pro-Boro-L- Pro (Boropro)
pdb|2AJD|C Chain C, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
L-Pro-Boro-L- Pro (Boropro)
pdb|2AJD|D Chain D, Porcine Dipeptidyl Peptidase Iv (Cd26) In Complex With
L-Pro-Boro-L- Pro (Boropro)
Length = 728
Score = 103 bits (258), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 72/117 (61%), Gaps = 2/117 (1%)
Query: 1 YGGPGSNIISDRFSIDFHTYLVSKRHVIVVHIDARGSAYRSKEQEHSVYRNLGRYEIADQ 60
Y GP S + F + + TYL S ++IV D RGS Y+ + H++ R LG +E+ DQ
Sbjct: 509 YAGPCSQKVDTVFRLSWATYLASTENIIVASFDGRGSGYQGDKIMHAINRRLGTFEVEDQ 568
Query: 61 IAVVKYLTERFQFIDKTKVGIWGWSYGGFATAMVLATDTQNVFKCGVSVAPVTNFLY 117
I + + + F+D ++ IWGWSYGG+ T+MVL + VFKCG++VAPV+ + Y
Sbjct: 569 IEATRQFS-KMGFVDDKRIAIWGWSYGGYVTSMVLGAGS-GVFKCGIAVAPVSKWEY 623
>pdb|3CCB|A Chain A, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCB|B Chain B, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCB|C Chain C, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCB|D Chain D, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCC|A Chain A, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCC|B Chain B, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCC|C Chain C, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3CCC|D Chain D, Crystal Structure Of Human Dpp4 In Complex With A
Benzimidazole Derivative
pdb|3G0B|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Tak-322
pdb|3G0B|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Tak-322
pdb|3G0B|C Chain C, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Tak-322
pdb|3G0B|D Chain D, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Tak-322
pdb|3G0C|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 1
pdb|3G0C|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 1
pdb|3G0C|C Chain C, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 1
pdb|3G0C|D Chain D, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 1
pdb|3G0D|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 2
pdb|3G0D|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 2
pdb|3G0D|C Chain C, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 2
pdb|3G0D|D Chain D, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinedione Inhibitor 2
pdb|3G0G|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinone Inhibitor 3
pdb|3G0G|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinone Inhibitor 3
pdb|3G0G|C Chain C, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinone Inhibitor 3
pdb|3G0G|D Chain D, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With A Pyrimidinone Inhibitor 3
pdb|3O95|A Chain A, Crystal Structure Of Human Dpp4 Bound To Tak-100
pdb|3O95|B Chain B, Crystal Structure Of Human Dpp4 Bound To Tak-100
pdb|3O95|C Chain C, Crystal Structure Of Human Dpp4 Bound To Tak-100
pdb|3O95|D Chain D, Crystal Structure Of Human Dpp4 Bound To Tak-100
pdb|3O9V|A Chain A, Crystal Structure Of Human Dpp4 Bound To Tak-986
pdb|3O9V|B Chain B, Crystal Structure Of Human Dpp4 Bound To Tak-986
pdb|3O9V|C Chain C, Crystal Structure Of Human Dpp4 Bound To Tak-986
pdb|3O9V|D Chain D, Crystal Structure Of Human Dpp4 Bound To Tak-986
pdb|3OPM|A Chain A, Crystal Structure Of Human Dpp4 Bound To Tak-294
pdb|3OPM|B Chain B, Crystal Structure Of Human Dpp4 Bound To Tak-294
pdb|3OPM|C Chain C, Crystal Structure Of Human Dpp4 Bound To Tak-294
pdb|3OPM|D Chain D, Crystal Structure Of Human Dpp4 Bound To Tak-294
pdb|4G1F|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Pyridopyrimidinedione Analogue
pdb|4G1F|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Pyridopyrimidinedione Analogue
pdb|4G1F|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Pyridopyrimidinedione Analogue
pdb|4G1F|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Pyridopyrimidinedione Analogue
Length = 740
Score = 103 bits (257), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 73/117 (62%), Gaps = 2/117 (1%)
Query: 1 YGGPGSNIISDRFSIDFHTYLVSKRHVIVVHIDARGSAYRSKEQEHSVYRNLGRYEIADQ 60
Y GP S F +++ TYL S ++IV D RGS Y+ + H++ R LG +E+ DQ
Sbjct: 521 YAGPCSQKADTVFRLNWATYLASTENIIVASFDGRGSGYQGDKIMHAINRRLGTFEVEDQ 580
Query: 61 IAVVKYLTERFQFIDKTKVGIWGWSYGGFATAMVLATDTQNVFKCGVSVAPVTNFLY 117
I + + + F+D ++ IWGWSYGG+ T+MVL + + VFKCG++VAPV+ + Y
Sbjct: 581 IEAARQFS-KMGFVDNKRIAIWGWSYGGYVTSMVLGSGS-GVFKCGIAVAPVSRWEY 635
>pdb|2JID|A Chain A, Human Dipeptidyl Peptidase Iv In Complex With 1-(3,4-
Dimethoxy-Phenyl)-3-M-Tolyl-Piperidine-4-Ylamine
pdb|2JID|B Chain B, Human Dipeptidyl Peptidase Iv In Complex With 1-(3,4-
Dimethoxy-Phenyl)-3-M-Tolyl-Piperidine-4-Ylamine
Length = 736
Score = 103 bits (257), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 73/117 (62%), Gaps = 2/117 (1%)
Query: 1 YGGPGSNIISDRFSIDFHTYLVSKRHVIVVHIDARGSAYRSKEQEHSVYRNLGRYEIADQ 60
Y GP S F +++ TYL S ++IV D RGS Y+ + H++ R LG +E+ DQ
Sbjct: 517 YAGPCSQKADTVFRLNWATYLASTENIIVASFDGRGSGYQGDKIMHAINRRLGTFEVEDQ 576
Query: 61 IAVVKYLTERFQFIDKTKVGIWGWSYGGFATAMVLATDTQNVFKCGVSVAPVTNFLY 117
I + + + F+D ++ IWGWSYGG+ T+MVL + + VFKCG++VAPV+ + Y
Sbjct: 577 IEAARQFS-KMGFVDNKRIAIWGWSYGGYVTSMVLGSGS-GVFKCGIAVAPVSRWEY 631
>pdb|3QBJ|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Inhibitor
pdb|3QBJ|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Inhibitor
Length = 748
Score = 103 bits (257), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 73/117 (62%), Gaps = 2/117 (1%)
Query: 1 YGGPGSNIISDRFSIDFHTYLVSKRHVIVVHIDARGSAYRSKEQEHSVYRNLGRYEIADQ 60
Y GP S F +++ TYL S ++IV D RGS Y+ + H++ R LG +E+ DQ
Sbjct: 517 YAGPCSQKADTVFRLNWATYLASTENIIVASFDGRGSGYQGDKIMHAINRRLGTFEVEDQ 576
Query: 61 IAVVKYLTERFQFIDKTKVGIWGWSYGGFATAMVLATDTQNVFKCGVSVAPVTNFLY 117
I + + + F+D ++ IWGWSYGG+ T+MVL + + VFKCG++VAPV+ + Y
Sbjct: 577 IEAARQFS-KMGFVDNKRIAIWGWSYGGYVTSMVLGSGS-GVFKCGIAVAPVSRWEY 631
>pdb|1X70|A Chain A, Human Dipeptidyl Peptidase Iv In Complex With A Beta Amino
Acid Inhibitor
pdb|1X70|B Chain B, Human Dipeptidyl Peptidase Iv In Complex With A Beta Amino
Acid Inhibitor
pdb|2FJP|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH AN
INHIBITOR
pdb|2FJP|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH AN
INHIBITOR
pdb|2HHA|A Chain A, The Structure Of Dpp4 In Complex With An Oxadiazole
Inhibitor
pdb|2HHA|B Chain B, The Structure Of Dpp4 In Complex With An Oxadiazole
Inhibitor
pdb|2IIT|A Chain A, Human Dipeptidyl Peptidase 4 In Complex With A
Diazepan-2-one Inhibitor
pdb|2IIT|B Chain B, Human Dipeptidyl Peptidase 4 In Complex With A
Diazepan-2-one Inhibitor
pdb|2IIV|A Chain A, Human Dipeptidyl Peptidase 4 In Complex With A
Diazepan-2-One Inhibitor
pdb|2IIV|B Chain B, Human Dipeptidyl Peptidase 4 In Complex With A
Diazepan-2-One Inhibitor
pdb|2OPH|A Chain A, Human Dipeptidyl Peptidase Iv In Complex With An Alpha
Amino Acid Inhibitor
pdb|2OPH|B Chain B, Human Dipeptidyl Peptidase Iv In Complex With An Alpha
Amino Acid Inhibitor
pdb|2P8S|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A
CYCLOHEXALAMINE Inhibitor
pdb|2P8S|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A
CYCLOHEXALAMINE Inhibitor
pdb|2QOE|A Chain A, Human Dipeptidyl Peptidase Iv In Complex With A
Triazolopiperazine- Based Beta Amino Acid Inhibitor
pdb|2QOE|B Chain B, Human Dipeptidyl Peptidase Iv In Complex With A
Triazolopiperazine- Based Beta Amino Acid Inhibitor
pdb|3C43|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A
FLOUROOLEFIN Inhibitor
pdb|3C43|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A
FLOUROOLEFIN Inhibitor
pdb|3C45|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A
FLUOROOLEFIN Inhibitor
pdb|3C45|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A
FLUOROOLEFIN Inhibitor
pdb|3D4L|A Chain A, Human Dipeptidyl Peptidase Iv/cd26 In Complex With A Novel
Inhibitor
pdb|3D4L|B Chain B, Human Dipeptidyl Peptidase Iv/cd26 In Complex With A Novel
Inhibitor
pdb|2QKY|A Chain A, Complex Structure Of Dipeptidyl Peptidase Iv And A
Oxadiazolyl Ketone
pdb|2QKY|B Chain B, Complex Structure Of Dipeptidyl Peptidase Iv And A
Oxadiazolyl Ketone
pdb|2QKY|C Chain C, Complex Structure Of Dipeptidyl Peptidase Iv And A
Oxadiazolyl Ketone
pdb|2QKY|D Chain D, Complex Structure Of Dipeptidyl Peptidase Iv And A
Oxadiazolyl Ketone
pdb|3HAB|A Chain A, The Structure Of Dpp4 In Complex With Piperidine Fused
Benzimidazole 25
pdb|3HAB|B Chain B, The Structure Of Dpp4 In Complex With Piperidine Fused
Benzimidazole 25
pdb|3HAC|A Chain A, The Structure Of Dpp-4 In Complex With Piperidine Fused
Imidazopyridine 34
pdb|3HAC|B Chain B, The Structure Of Dpp-4 In Complex With Piperidine Fused
Imidazopyridine 34
Length = 728
Score = 103 bits (257), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 73/117 (62%), Gaps = 2/117 (1%)
Query: 1 YGGPGSNIISDRFSIDFHTYLVSKRHVIVVHIDARGSAYRSKEQEHSVYRNLGRYEIADQ 60
Y GP S F +++ TYL S ++IV D RGS Y+ + H++ R LG +E+ DQ
Sbjct: 509 YAGPCSQKADTVFRLNWATYLASTENIIVASFDGRGSGYQGDKIMHAINRRLGTFEVEDQ 568
Query: 61 IAVVKYLTERFQFIDKTKVGIWGWSYGGFATAMVLATDTQNVFKCGVSVAPVTNFLY 117
I + + + F+D ++ IWGWSYGG+ T+MVL + + VFKCG++VAPV+ + Y
Sbjct: 569 IEAARQFS-KMGFVDNKRIAIWGWSYGGYVTSMVLGSGS-GVFKCGIAVAPVSRWEY 623
>pdb|3NOX|A Chain A, Crystal Structure Of Human Dpp-Iv In Complex With
Sa-(+)-(6-
(Aminomethyl)-5-(2,4-Dichlorophenyl)-7-Methylimidazo[1,
2-A]pyrimidin- 2-Yl)(Morpholino)methanone
pdb|3NOX|B Chain B, Crystal Structure Of Human Dpp-Iv In Complex With
Sa-(+)-(6-
(Aminomethyl)-5-(2,4-Dichlorophenyl)-7-Methylimidazo[1,
2-A]pyrimidin- 2-Yl)(Morpholino)methanone
pdb|3SWW|A Chain A, Crystal Structure Of Human Dpp-Iv In Complex With
Sa-(+)-3-
(Aminomethyl)-4-(2,
4-Dichlorophenyl)-6-(2-Methoxyphenyl)- 2-Methyl-
5h-Pyrrolo[3,4-B]pyridin-7(6h)-One
pdb|3SWW|B Chain B, Crystal Structure Of Human Dpp-Iv In Complex With
Sa-(+)-3-
(Aminomethyl)-4-(2,
4-Dichlorophenyl)-6-(2-Methoxyphenyl)- 2-Methyl-
5h-Pyrrolo[3,4-B]pyridin-7(6h)-One
pdb|3SX4|A Chain A, Crystal Structure Of Human Dpp-Iv In Complex With
Sa-(+)-3-
(Aminomethyl)-4-(2,
4-Dichlorophenyl)-6-(2-Methoxyphenyl)- 2-Methyl-
5h-Pyrrolo[3,4-B]pyridin-7(6h)-One
pdb|3SX4|B Chain B, Crystal Structure Of Human Dpp-Iv In Complex With
Sa-(+)-3-
(Aminomethyl)-4-(2,
4-Dichlorophenyl)-6-(2-Methoxyphenyl)- 2-Methyl-
5h-Pyrrolo[3,4-B]pyridin-7(6h)-One
pdb|3Q0T|A Chain A, Crystal Structure Of Human Dpp-iv In Complex Withsa-(+)-
Methyl2-(3-
(aminomethyl)-4-(2,4-dichlorophenyl)-2-methyl-
7-oxo-5h-pyrrolo[3,4- B]pyridin-6(7h)-yl)acetate
pdb|3Q0T|B Chain B, Crystal Structure Of Human Dpp-iv In Complex Withsa-(+)-
Methyl2-(3-
(aminomethyl)-4-(2,4-dichlorophenyl)-2-methyl-
7-oxo-5h-pyrrolo[3,4- B]pyridin-6(7h)-yl)acetate
Length = 753
Score = 103 bits (257), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 73/117 (62%), Gaps = 2/117 (1%)
Query: 1 YGGPGSNIISDRFSIDFHTYLVSKRHVIVVHIDARGSAYRSKEQEHSVYRNLGRYEIADQ 60
Y GP S F +++ TYL S ++IV D RGS Y+ + H++ R LG +E+ DQ
Sbjct: 511 YAGPCSQKADTVFRLNWATYLASTENIIVASFDGRGSGYQGDKIMHAINRRLGTFEVEDQ 570
Query: 61 IAVVKYLTERFQFIDKTKVGIWGWSYGGFATAMVLATDTQNVFKCGVSVAPVTNFLY 117
I + + + F+D ++ IWGWSYGG+ T+MVL + + VFKCG++VAPV+ + Y
Sbjct: 571 IEAARQFS-KMGFVDNKRIAIWGWSYGGYVTSMVLGSGS-GVFKCGIAVAPVSRWEY 625
>pdb|2QJR|A Chain A, Dipepdyl Peptidase Iv In Complex With Inhibitor Pzf
pdb|2QJR|B Chain B, Dipepdyl Peptidase Iv In Complex With Inhibitor Pzf
pdb|3F8S|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Inhibitor
pdb|3F8S|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv In Complex
With Inhibitor
Length = 748
Score = 103 bits (257), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 73/117 (62%), Gaps = 2/117 (1%)
Query: 1 YGGPGSNIISDRFSIDFHTYLVSKRHVIVVHIDARGSAYRSKEQEHSVYRNLGRYEIADQ 60
Y GP S F +++ TYL S ++IV D RGS Y+ + H++ R LG +E+ DQ
Sbjct: 517 YAGPCSQKADTVFRLNWATYLASTENIIVASFDGRGSGYQGDKIMHAINRRLGTFEVEDQ 576
Query: 61 IAVVKYLTERFQFIDKTKVGIWGWSYGGFATAMVLATDTQNVFKCGVSVAPVTNFLY 117
I + + + F+D ++ IWGWSYGG+ T+MVL + + VFKCG++VAPV+ + Y
Sbjct: 577 IEAARQFS-KMGFVDNKRIAIWGWSYGGYVTSMVLGSGS-GVFKCGIAVAPVSRWEY 631
>pdb|2BGR|A Chain A, Crystal Structure Of Hiv-1 Tat Derived Nonapeptides
Tat(1-9) Bound To The Active Site Of Dipeptidyl
Peptidase Iv (Cd26)
pdb|2BGR|B Chain B, Crystal Structure Of Hiv-1 Tat Derived Nonapeptides
Tat(1-9) Bound To The Active Site Of Dipeptidyl
Peptidase Iv (Cd26)
Length = 738
Score = 103 bits (257), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 73/117 (62%), Gaps = 2/117 (1%)
Query: 1 YGGPGSNIISDRFSIDFHTYLVSKRHVIVVHIDARGSAYRSKEQEHSVYRNLGRYEIADQ 60
Y GP S F +++ TYL S ++IV D RGS Y+ + H++ R LG +E+ DQ
Sbjct: 519 YAGPCSQKADTVFRLNWATYLASTENIIVASFDGRGSGYQGDKIMHAINRRLGTFEVEDQ 578
Query: 61 IAVVKYLTERFQFIDKTKVGIWGWSYGGFATAMVLATDTQNVFKCGVSVAPVTNFLY 117
I + + + F+D ++ IWGWSYGG+ T+MVL + + VFKCG++VAPV+ + Y
Sbjct: 579 IEAARQFS-KMGFVDNKRIAIWGWSYGGYVTSMVLGSGS-GVFKCGIAVAPVSRWEY 633
>pdb|1PFQ|A Chain A, Crystal Structure Of Human Apo Dipeptidyl Peptidase Iv /
Cd26
pdb|1PFQ|B Chain B, Crystal Structure Of Human Apo Dipeptidyl Peptidase Iv /
Cd26
Length = 731
Score = 103 bits (257), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 73/117 (62%), Gaps = 2/117 (1%)
Query: 1 YGGPGSNIISDRFSIDFHTYLVSKRHVIVVHIDARGSAYRSKEQEHSVYRNLGRYEIADQ 60
Y GP S F +++ TYL S ++IV D RGS Y+ + H++ R LG +E+ DQ
Sbjct: 512 YAGPCSQKADTVFRLNWATYLASTENIIVASFDGRGSGYQGDKIMHAINRRLGTFEVEDQ 571
Query: 61 IAVVKYLTERFQFIDKTKVGIWGWSYGGFATAMVLATDTQNVFKCGVSVAPVTNFLY 117
I + + + F+D ++ IWGWSYGG+ T+MVL + + VFKCG++VAPV+ + Y
Sbjct: 572 IEAARQFS-KMGFVDNKRIAIWGWSYGGYVTSMVLGSGS-GVFKCGIAVAPVSRWEY 626
>pdb|1N1M|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH AN
INHIBITOR
pdb|1N1M|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH AN
INHIBITOR
pdb|1NU6|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv
(Dpp-Iv)
pdb|1NU6|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv
(Dpp-Iv)
pdb|1NU8|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv
(Dpp-Iv) In Complex With Diprotin A (Ili)
pdb|1NU8|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv
(Dpp-Iv) In Complex With Diprotin A (Ili)
pdb|1TK3|A Chain A, Crystal Structure Of Human Apo Dipeptidyl Peptidase IvCD26
pdb|1TK3|B Chain B, Crystal Structure Of Human Apo Dipeptidyl Peptidase IvCD26
pdb|1TKR|A Chain A, Human Dipeptidyl Peptidase IvCD26 INHIBITED WITH
DIISOPROPYL Fluorophosphate
pdb|1TKR|B Chain B, Human Dipeptidyl Peptidase IvCD26 INHIBITED WITH
DIISOPROPYL Fluorophosphate
pdb|1W1I|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv (Dppiv Or
Cd26) In Complex With Adenosine Deaminase
pdb|1W1I|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv (Dppiv Or
Cd26) In Complex With Adenosine Deaminase
pdb|1W1I|C Chain C, Crystal Structure Of Dipeptidyl Peptidase Iv (Dppiv Or
Cd26) In Complex With Adenosine Deaminase
pdb|1W1I|D Chain D, Crystal Structure Of Dipeptidyl Peptidase Iv (Dppiv Or
Cd26) In Complex With Adenosine Deaminase
pdb|1RWQ|A Chain A, Human Dipeptidyl Peptidase Iv In Complex With
5-Aminomethyl-6-(2,4-
Dichloro-Phenyl)-2-(3,
5-Dimethoxy-Phenyl)-Pyrimidin-4-Ylamine
pdb|1RWQ|B Chain B, Human Dipeptidyl Peptidase Iv In Complex With
5-Aminomethyl-6-(2,4-
Dichloro-Phenyl)-2-(3,
5-Dimethoxy-Phenyl)-Pyrimidin-4-Ylamine
pdb|2BGN|A Chain A, Hiv-1 Tat Protein Derived N-Terminal Nonapeptide Trp2-Tat
(1-9) Bound To The Active Site Of Dipeptidyl Peptidase
Iv (Cd26)
pdb|2BGN|B Chain B, Hiv-1 Tat Protein Derived N-Terminal Nonapeptide Trp2-Tat
(1-9) Bound To The Active Site Of Dipeptidyl Peptidase
Iv (Cd26)
pdb|2BGN|C Chain C, Hiv-1 Tat Protein Derived N-Terminal Nonapeptide Trp2-Tat
(1-9) Bound To The Active Site Of Dipeptidyl Peptidase
Iv (Cd26)
pdb|2BGN|D Chain D, Hiv-1 Tat Protein Derived N-Terminal Nonapeptide Trp2-Tat
(1-9) Bound To The Active Site Of Dipeptidyl Peptidase
Iv (Cd26)
pdb|2AJL|I Chain I, X-Ray Structure Of Novel Biaryl-Based Dipeptidyl Peptidase
Iv Inhibitor
pdb|2AJL|J Chain J, X-Ray Structure Of Novel Biaryl-Based Dipeptidyl Peptidase
Iv Inhibitor
pdb|2BUB|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Cd26)
In Complex With A Reversed Amide Inhibitor
pdb|2BUB|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Cd26)
In Complex With A Reversed Amide Inhibitor
pdb|2OGZ|A Chain A, Crystal Structure Of Dpp-Iv Complexed With Lilly Aryl
Ketone Inhibitor
pdb|2OGZ|B Chain B, Crystal Structure Of Dpp-Iv Complexed With Lilly Aryl
Ketone Inhibitor
pdb|2OQI|A Chain A, Human Dipeptidyl Peptidase Iv (Dpp4) With Piperidinone-
Constrained Phenethylamine
pdb|2OQI|B Chain B, Human Dipeptidyl Peptidase Iv (Dpp4) With Piperidinone-
Constrained Phenethylamine
pdb|2OQI|C Chain C, Human Dipeptidyl Peptidase Iv (Dpp4) With Piperidinone-
Constrained Phenethylamine
pdb|2OQI|D Chain D, Human Dipeptidyl Peptidase Iv (Dpp4) With Piperidinone-
Constrained Phenethylamine
pdb|2OLE|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complex With Cyclic Hydrazine Derivatives
pdb|2OLE|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complex With Cyclic Hydrazine Derivatives
pdb|3BJM|A Chain A, Crystal Structure Of Human Dpp-Iv In Complex With (1s,3s,
5s)-2-[(2s)-
2-Amino-2-(3-Hydroxytricyclo[3.3.1.13,7]dec-1-
Yl)acetyl]-2- Azabicyclo[3.1.0]hexane-3-Carbonitrile
(Cas), (1s,3s,5s)-2-((2s)-2-
Amino-2-(3-Hydroxyadamantan-1-
Yl)acetyl)-2-Azabicyclo[3.1.0]hexane- 3-Carbonitrile
(Iupac), Or Bms-477118
pdb|3BJM|B Chain B, Crystal Structure Of Human Dpp-Iv In Complex With (1s,3s,
5s)-2-[(2s)-
2-Amino-2-(3-Hydroxytricyclo[3.3.1.13,7]dec-1-
Yl)acetyl]-2- Azabicyclo[3.1.0]hexane-3-Carbonitrile
(Cas), (1s,3s,5s)-2-((2s)-2-
Amino-2-(3-Hydroxyadamantan-1-
Yl)acetyl)-2-Azabicyclo[3.1.0]hexane- 3-Carbonitrile
(Iupac), Or Bms-477118
pdb|3EIO|A Chain A, Crystal Structure Analysis Of Dppiv Inhibitor
pdb|3EIO|B Chain B, Crystal Structure Analysis Of Dppiv Inhibitor
pdb|3H0C|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Cd26)
In Complex With A Reversed Amide Inhibitor
pdb|3H0C|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Cd26)
In Complex With A Reversed Amide Inhibitor
pdb|3KWF|A Chain A, Human Dpp-Iv With Carmegliptin
(S)-1-((2s,3s,11bs)-2-Amino-
9,10-Dimethoxy-1,3,4,6,7,11b-Hexahydro-2h-Pyrido[2,1-
A]isoquinolin-3-Yl)-4-Fluoromethyl-Pyrrolidin-2-One
pdb|3KWF|B Chain B, Human Dpp-Iv With Carmegliptin
(S)-1-((2s,3s,11bs)-2-Amino-
9,10-Dimethoxy-1,3,4,6,7,11b-Hexahydro-2h-Pyrido[2,1-
A]isoquinolin-3-Yl)-4-Fluoromethyl-Pyrrolidin-2-One
pdb|3OC0|A Chain A, Structure Of Human Dpp-Iv With Hts Hit
(2s,3s,11bs)-3-Butyl-9,10-
Dimethoxy-1,3,4,6,7,11b-Hexahydro-2h-Pyrido[2,
1-A]isoquinolin-2- Ylamine
pdb|3OC0|B Chain B, Structure Of Human Dpp-Iv With Hts Hit
(2s,3s,11bs)-3-Butyl-9,10-
Dimethoxy-1,3,4,6,7,11b-Hexahydro-2h-Pyrido[2,
1-A]isoquinolin-2- Ylamine
pdb|3KWJ|A Chain A, Strucutre Of Human Dpp-Iv With
(2s,3s,11bs)-3-(3-Fluoromethyl-Phenyl)-
9,10-Dimethoxy-1,3,4,6,7,11b-Hexahydro-2h-Pyrido[2,
1-A]isoquinolin-2- Ylamine
pdb|3KWJ|B Chain B, Strucutre Of Human Dpp-Iv With
(2s,3s,11bs)-3-(3-Fluoromethyl-Phenyl)-
9,10-Dimethoxy-1,3,4,6,7,11b-Hexahydro-2h-Pyrido[2,
1-A]isoquinolin-2- Ylamine
pdb|4DSA|A Chain A, Crystal Structure Of Dpp-iv With Compound C1
pdb|4DSA|B Chain B, Crystal Structure Of Dpp-iv With Compound C1
pdb|4DSZ|A Chain A, Crystal Structure Of Dpp-iv With Compound C2
pdb|4DSZ|B Chain B, Crystal Structure Of Dpp-iv With Compound C2
pdb|4DTC|A Chain A, Crystal Structure Of Dpp-iv With Compound C5
pdb|4DTC|B Chain B, Crystal Structure Of Dpp-iv With Compound C5
Length = 728
Score = 103 bits (257), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 73/117 (62%), Gaps = 2/117 (1%)
Query: 1 YGGPGSNIISDRFSIDFHTYLVSKRHVIVVHIDARGSAYRSKEQEHSVYRNLGRYEIADQ 60
Y GP S F +++ TYL S ++IV D RGS Y+ + H++ R LG +E+ DQ
Sbjct: 509 YAGPCSQKADTVFRLNWATYLASTENIIVASFDGRGSGYQGDKIMHAINRRLGTFEVEDQ 568
Query: 61 IAVVKYLTERFQFIDKTKVGIWGWSYGGFATAMVLATDTQNVFKCGVSVAPVTNFLY 117
I + + + F+D ++ IWGWSYGG+ T+MVL + + VFKCG++VAPV+ + Y
Sbjct: 569 IEAARQFS-KMGFVDNKRIAIWGWSYGGYVTSMVLGSGS-GVFKCGIAVAPVSRWEY 623
>pdb|2RGU|A Chain A, Crystal Structure Of Complex Of Human Dpp4 And Inhibitor
pdb|2RGU|B Chain B, Crystal Structure Of Complex Of Human Dpp4 And Inhibitor
Length = 734
Score = 103 bits (257), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 73/117 (62%), Gaps = 2/117 (1%)
Query: 1 YGGPGSNIISDRFSIDFHTYLVSKRHVIVVHIDARGSAYRSKEQEHSVYRNLGRYEIADQ 60
Y GP S F +++ TYL S ++IV D RGS Y+ + H++ R LG +E+ DQ
Sbjct: 509 YAGPCSQKADTVFRLNWATYLASTENIIVASFDGRGSGYQGDKIMHAINRRLGTFEVEDQ 568
Query: 61 IAVVKYLTERFQFIDKTKVGIWGWSYGGFATAMVLATDTQNVFKCGVSVAPVTNFLY 117
I + + + F+D ++ IWGWSYGG+ T+MVL + + VFKCG++VAPV+ + Y
Sbjct: 569 IEAARQFS-KMGFVDNKRIAIWGWSYGGYVTSMVLGSGS-GVFKCGIAVAPVSRWEY 623
>pdb|1J2E|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv
pdb|1J2E|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv
pdb|1WCY|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (dppiv)
Complex With Diprotin A
pdb|1WCY|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (dppiv)
Complex With Diprotin A
pdb|3VJM|A Chain A, Crystal Structure Of Human Depiptidyl Peptidase Iv (Dpp-4)
In Complex With A Prolylthiazolidine Inhibitor #1
pdb|3VJM|B Chain B, Crystal Structure Of Human Depiptidyl Peptidase Iv (Dpp-4)
In Complex With A Prolylthiazolidine Inhibitor #1
pdb|3VJK|A Chain A, Crystal Structure Of Human Depiptidyl Peptidase Iv (Dpp-4)
In Complex With Mp-513
pdb|3VJK|B Chain B, Crystal Structure Of Human Depiptidyl Peptidase Iv (Dpp-4)
In Complex With Mp-513
pdb|3VJL|A Chain A, Crystal Structure Of Human Depiptidyl Peptidase Iv (Dpp-4)
In Complex With A Prolylthiazolidine Inhibitor #2
pdb|3VJL|B Chain B, Crystal Structure Of Human Depiptidyl Peptidase Iv (Dpp-4)
In Complex With A Prolylthiazolidine Inhibitor #2
Length = 740
Score = 103 bits (257), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 73/117 (62%), Gaps = 2/117 (1%)
Query: 1 YGGPGSNIISDRFSIDFHTYLVSKRHVIVVHIDARGSAYRSKEQEHSVYRNLGRYEIADQ 60
Y GP S F +++ TYL S ++IV D RGS Y+ + H++ R LG +E+ DQ
Sbjct: 515 YAGPCSQKADTVFRLNWATYLASTENIIVASFDGRGSGYQGDKIMHAINRRLGTFEVEDQ 574
Query: 61 IAVVKYLTERFQFIDKTKVGIWGWSYGGFATAMVLATDTQNVFKCGVSVAPVTNFLY 117
I + + + F+D ++ IWGWSYGG+ T+MVL + + VFKCG++VAPV+ + Y
Sbjct: 575 IEAARQFS-KMGFVDNKRIAIWGWSYGGYVTSMVLGSGS-GVFKCGIAVAPVSRWEY 629
>pdb|1R9N|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Decapeptide (Tnpy) At 2.3 Ang. Resolution
pdb|1R9N|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Decapeptide (Tnpy) At 2.3 Ang. Resolution
pdb|1R9N|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Decapeptide (Tnpy) At 2.3 Ang. Resolution
pdb|1R9N|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase Iv In
Complex With A Decapeptide (Tnpy) At 2.3 Ang. Resolution
Length = 739
Score = 103 bits (257), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 73/117 (62%), Gaps = 2/117 (1%)
Query: 1 YGGPGSNIISDRFSIDFHTYLVSKRHVIVVHIDARGSAYRSKEQEHSVYRNLGRYEIADQ 60
Y GP S F +++ TYL S ++IV D RGS Y+ + H++ R LG +E+ DQ
Sbjct: 520 YAGPCSQKADTVFRLNWATYLASTENIIVASFDGRGSGYQGDKIMHAINRRLGTFEVEDQ 579
Query: 61 IAVVKYLTERFQFIDKTKVGIWGWSYGGFATAMVLATDTQNVFKCGVSVAPVTNFLY 117
I + + + F+D ++ IWGWSYGG+ T+MVL + + VFKCG++VAPV+ + Y
Sbjct: 580 IEAARQFS-KMGFVDNKRIAIWGWSYGGYVTSMVLGSGS-GVFKCGIAVAPVSRWEY 634
>pdb|2QT9|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A 4-Aryl
Cyclohexylalanine Inhibitor
pdb|2QT9|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A 4-Aryl
Cyclohexylalanine Inhibitor
pdb|2QTB|A Chain A, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A 4-Aryl
Cyclohexylalanine Inhibitor
pdb|2QTB|B Chain B, Human Dipeptidyl Peptidase IvCD26 IN COMPLEX WITH A 4-Aryl
Cyclohexylalanine Inhibitor
Length = 766
Score = 103 bits (257), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 73/117 (62%), Gaps = 2/117 (1%)
Query: 1 YGGPGSNIISDRFSIDFHTYLVSKRHVIVVHIDARGSAYRSKEQEHSVYRNLGRYEIADQ 60
Y GP S F +++ TYL S ++IV D RGS Y+ + H++ R LG +E+ DQ
Sbjct: 547 YAGPCSQKADTVFRLNWATYLASTENIIVASFDGRGSGYQGDKIMHAINRRLGTFEVEDQ 606
Query: 61 IAVVKYLTERFQFIDKTKVGIWGWSYGGFATAMVLATDTQNVFKCGVSVAPVTNFLY 117
I + + + F+D ++ IWGWSYGG+ T+MVL + + VFKCG++VAPV+ + Y
Sbjct: 607 IEAARQFS-KMGFVDNKRIAIWGWSYGGYVTSMVLGSGS-GVFKCGIAVAPVSRWEY 661
>pdb|4A5S|A Chain A, Crystal Structure Of Human Dpp4 In Complex With A Noval
Heterocyclic Dpp4 Inhibitor
pdb|4A5S|B Chain B, Crystal Structure Of Human Dpp4 In Complex With A Noval
Heterocyclic Dpp4 Inhibitor
Length = 740
Score = 103 bits (257), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 73/117 (62%), Gaps = 2/117 (1%)
Query: 1 YGGPGSNIISDRFSIDFHTYLVSKRHVIVVHIDARGSAYRSKEQEHSVYRNLGRYEIADQ 60
Y GP S F +++ TYL S ++IV D RGS Y+ + H++ R LG +E+ DQ
Sbjct: 509 YAGPCSQKADTVFRLNWATYLASTENIIVASFDGRGSGYQGDKIMHAINRRLGTFEVEDQ 568
Query: 61 IAVVKYLTERFQFIDKTKVGIWGWSYGGFATAMVLATDTQNVFKCGVSVAPVTNFLY 117
I + + + F+D ++ IWGWSYGG+ T+MVL + + VFKCG++VAPV+ + Y
Sbjct: 569 IEAARQFS-KMGFVDNKRIAIWGWSYGGYVTSMVLGSGS-GVFKCGIAVAPVSRWEY 623
>pdb|3Q8W|A Chain A, A B-Aminoacyl Containing Thiazolidine Derivative And Dppiv
Complex
pdb|3Q8W|B Chain B, A B-Aminoacyl Containing Thiazolidine Derivative And Dppiv
Complex
Length = 732
Score = 103 bits (257), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 73/117 (62%), Gaps = 2/117 (1%)
Query: 1 YGGPGSNIISDRFSIDFHTYLVSKRHVIVVHIDARGSAYRSKEQEHSVYRNLGRYEIADQ 60
Y GP S F +++ TYL S ++IV D RGS Y+ + H++ R LG +E+ DQ
Sbjct: 509 YAGPCSQKADTVFRLNWATYLASTENIIVASFDGRGSGYQGDKIMHAINRRLGTFEVEDQ 568
Query: 61 IAVVKYLTERFQFIDKTKVGIWGWSYGGFATAMVLATDTQNVFKCGVSVAPVTNFLY 117
I + + + F+D ++ IWGWSYGG+ T+MVL + + VFKCG++VAPV+ + Y
Sbjct: 569 IEAARQFS-KMGFVDNKRIAIWGWSYGGYVTSMVLGSGS-GVFKCGIAVAPVSRWEY 623
>pdb|2RIP|A Chain A, Structure Of Dppiv In Complex With An Inhibitor
Length = 729
Score = 103 bits (257), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 73/117 (62%), Gaps = 2/117 (1%)
Query: 1 YGGPGSNIISDRFSIDFHTYLVSKRHVIVVHIDARGSAYRSKEQEHSVYRNLGRYEIADQ 60
Y GP S F +++ TYL S ++IV D RGS Y+ + H++ R LG +E+ DQ
Sbjct: 510 YAGPCSQKADTVFRLNWATYLASTENIIVASFDGRGSGYQGDKIMHAINRRLGTFEVEDQ 569
Query: 61 IAVVKYLTERFQFIDKTKVGIWGWSYGGFATAMVLATDTQNVFKCGVSVAPVTNFLY 117
I + + + F+D ++ IWGWSYGG+ T+MVL + + VFKCG++VAPV+ + Y
Sbjct: 570 IEAARQFS-KMGFVDNKRIAIWGWSYGGYVTSMVLGSGS-GVFKCGIAVAPVSRWEY 624
>pdb|2ONC|A Chain A, Crystal Structure Of Human Dpp-4
pdb|2ONC|B Chain B, Crystal Structure Of Human Dpp-4
pdb|2ONC|C Chain C, Crystal Structure Of Human Dpp-4
pdb|2ONC|D Chain D, Crystal Structure Of Human Dpp-4
Length = 731
Score = 103 bits (257), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 73/117 (62%), Gaps = 2/117 (1%)
Query: 1 YGGPGSNIISDRFSIDFHTYLVSKRHVIVVHIDARGSAYRSKEQEHSVYRNLGRYEIADQ 60
Y GP S F +++ TYL S ++IV D RGS Y+ + H++ R LG +E+ DQ
Sbjct: 512 YAGPCSQKADTVFRLNWATYLASTENIIVASFDGRGSGYQGDKIMHAINRRLGTFEVEDQ 571
Query: 61 IAVVKYLTERFQFIDKTKVGIWGWSYGGFATAMVLATDTQNVFKCGVSVAPVTNFLY 117
I + + + F+D ++ IWGWSYGG+ T+MVL + + VFKCG++VAPV+ + Y
Sbjct: 572 IEAARQFS-KMGFVDNKRIAIWGWSYGGYVTSMVLGSGS-GVFKCGIAVAPVSRWEY 626
>pdb|2G5P|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
21ac
pdb|2G5P|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
21ac
pdb|2G5T|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
21ag
pdb|2G5T|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
21ag
pdb|2G63|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
24b
pdb|2G63|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
24b
pdb|2G63|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
24b
pdb|2G63|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
Complexed With Cyanopyrrolidine (C5-Pro-Pro) Inhibitor
24b
pdb|2I03|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase 4 (Dpp Iv)
With Potent Alkynyl Cyanopyrrolidine (Abt-279)
pdb|2I03|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase 4 (Dpp Iv)
With Potent Alkynyl Cyanopyrrolidine (Abt-279)
pdb|2I03|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase 4 (Dpp Iv)
With Potent Alkynyl Cyanopyrrolidine (Abt-279)
pdb|2I03|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase 4 (Dpp Iv)
With Potent Alkynyl Cyanopyrrolidine (Abt-279)
pdb|2OQV|A Chain A, Human Dipeptidyl Peptidase Iv (Dpp4) With Piperidine-
Constrained Phenethylamine
pdb|2OQV|B Chain B, Human Dipeptidyl Peptidase Iv (Dpp4) With Piperidine-
Constrained Phenethylamine
pdb|2I78|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dpp
Iv) Complexed With Abt-341, A Cyclohexene-Constrained
Phenethylamine Inhibitor
pdb|2I78|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dpp
Iv) Complexed With Abt-341, A Cyclohexene-Constrained
Phenethylamine Inhibitor
pdb|2I78|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dpp
Iv) Complexed With Abt-341, A Cyclohexene-Constrained
Phenethylamine Inhibitor
pdb|2I78|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dpp
Iv) Complexed With Abt-341, A Cyclohexene-Constrained
Phenethylamine Inhibitor
pdb|2OAG|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
With Pyrrolidine-Constrained Phenethylamine 29g
pdb|2OAG|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
With Pyrrolidine-Constrained Phenethylamine 29g
pdb|2OAG|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
With Pyrrolidine-Constrained Phenethylamine 29g
pdb|2OAG|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase Iv (Dppiv)
With Pyrrolidine-Constrained Phenethylamine 29g
Length = 726
Score = 103 bits (257), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 73/117 (62%), Gaps = 2/117 (1%)
Query: 1 YGGPGSNIISDRFSIDFHTYLVSKRHVIVVHIDARGSAYRSKEQEHSVYRNLGRYEIADQ 60
Y GP S F +++ TYL S ++IV D RGS Y+ + H++ R LG +E+ DQ
Sbjct: 509 YAGPCSQKADTVFRLNWATYLASTENIIVASFDGRGSGYQGDKIMHAINRRLGTFEVEDQ 568
Query: 61 IAVVKYLTERFQFIDKTKVGIWGWSYGGFATAMVLATDTQNVFKCGVSVAPVTNFLY 117
I + + + F+D ++ IWGWSYGG+ T+MVL + + VFKCG++VAPV+ + Y
Sbjct: 569 IEAARQFS-KMGFVDNKRIAIWGWSYGGYVTSMVLGSGS-GVFKCGIAVAPVSRWEY 623
>pdb|1R9M|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iv At 2.1
Ang. Resolution.
pdb|1R9M|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase Iv At 2.1
Ang. Resolution.
pdb|1R9M|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase Iv At 2.1
Ang. Resolution.
pdb|1R9M|D Chain D, Crystal Structure Of Human Dipeptidyl Peptidase Iv At 2.1
Ang. Resolution
Length = 733
Score = 103 bits (257), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 73/117 (62%), Gaps = 2/117 (1%)
Query: 1 YGGPGSNIISDRFSIDFHTYLVSKRHVIVVHIDARGSAYRSKEQEHSVYRNLGRYEIADQ 60
Y GP S F +++ TYL S ++IV D RGS Y+ + H++ R LG +E+ DQ
Sbjct: 514 YAGPCSQKADTVFRLNWATYLASTENIIVASFDGRGSGYQGDKIMHAINRRLGTFEVEDQ 573
Query: 61 IAVVKYLTERFQFIDKTKVGIWGWSYGGFATAMVLATDTQNVFKCGVSVAPVTNFLY 117
I + + + F+D ++ IWGWSYGG+ T+MVL + + VFKCG++VAPV+ + Y
Sbjct: 574 IEAARQFS-KMGFVDNKRIAIWGWSYGGYVTSMVLGSGS-GVFKCGIAVAPVSRWEY 628
>pdb|1U8E|A Chain A, Human Dipeptidyl Peptidase IvCD26 MUTANT Y547F
pdb|1U8E|B Chain B, Human Dipeptidyl Peptidase IvCD26 MUTANT Y547F
Length = 728
Score = 102 bits (254), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 47/117 (40%), Positives = 73/117 (62%), Gaps = 2/117 (1%)
Query: 1 YGGPGSNIISDRFSIDFHTYLVSKRHVIVVHIDARGSAYRSKEQEHSVYRNLGRYEIADQ 60
+ GP S F +++ TYL S ++IV D RGS Y+ + H++ R LG +E+ DQ
Sbjct: 509 FAGPCSQKADTVFRLNWATYLASTENIIVASFDGRGSGYQGDKIMHAINRRLGTFEVEDQ 568
Query: 61 IAVVKYLTERFQFIDKTKVGIWGWSYGGFATAMVLATDTQNVFKCGVSVAPVTNFLY 117
I + + + F+D ++ IWGWSYGG+ T+MVL + + VFKCG++VAPV+ + Y
Sbjct: 569 IEAARQFS-KMGFVDNKRIAIWGWSYGGYVTSMVLGSGS-GVFKCGIAVAPVSRWEY 623
>pdb|2GBC|A Chain A, Native Dpp-Iv (Cd26) From Rat
pdb|2GBC|B Chain B, Native Dpp-Iv (Cd26) From Rat
pdb|2GBF|A Chain A, Rat Dpp-Iv With Alkynyl Cyanopyrrolidine #1
pdb|2GBF|B Chain B, Rat Dpp-Iv With Alkynyl Cyanopyrrolidine #1
pdb|2GBG|A Chain A, Rat Dpp-Iv With Alkynyl Cyanopyrrolidine #2
pdb|2GBG|B Chain B, Rat Dpp-Iv With Alkynyl Cyanopyrrolidine #2
pdb|2GBI|A Chain A, Rat Dpp-Iv With Xanthine Inhibitor 4
pdb|2GBI|B Chain B, Rat Dpp-Iv With Xanthine Inhibitor 4
pdb|2I3Z|A Chain A, Rat Dpp-iv With Xanthine Mimetic Inhibitor #7
pdb|2I3Z|B Chain B, Rat Dpp-iv With Xanthine Mimetic Inhibitor #7
pdb|2OAE|A Chain A, Crystal Structure Of Rat Dipeptidyl Peptidase (Dppiv) With
Thiazole-Based Peptide Mimetic #31
pdb|2OAE|B Chain B, Crystal Structure Of Rat Dipeptidyl Peptidase (Dppiv) With
Thiazole-Based Peptide Mimetic #31
pdb|4FFV|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv (Dpp4,
Dpp-Iv, Cd26) In Complex With 11a19 Fab
pdb|4FFV|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv (Dpp4,
Dpp-Iv, Cd26) In Complex With 11a19 Fab
pdb|4FFW|A Chain A, Crystal Structure Of Dipeptidyl Peptidase Iv (Dpp4,
Dpp-Iv, Cd26) In Complex With Fab + Sitagliptin
pdb|4FFW|B Chain B, Crystal Structure Of Dipeptidyl Peptidase Iv (Dpp4,
Dpp-Iv, Cd26) In Complex With Fab + Sitagliptin
Length = 730
Score = 100 bits (250), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 71/117 (60%), Gaps = 2/117 (1%)
Query: 1 YGGPGSNIISDRFSIDFHTYLVSKRHVIVVHIDARGSAYRSKEQEHSVYRNLGRYEIADQ 60
Y GP S F +++ TYL S ++IV D RGS Y+ + H++ + LG E+ DQ
Sbjct: 511 YAGPCSQKADAAFRLNWATYLASTENIIVASFDGRGSGYQGDKIMHAINKRLGTLEVEDQ 570
Query: 61 IAVVKYLTERFQFIDKTKVGIWGWSYGGFATAMVLATDTQNVFKCGVSVAPVTNFLY 117
I + + F+D +V IWGWSYGG+ T+MVL + + VFKCG++VAPV+ + Y
Sbjct: 571 IEAARQFL-KMGFVDSKRVAIWGWSYGGYVTSMVLGSGS-GVFKCGIAVAPVSRWEY 625
>pdb|1XFD|A Chain A, Structure Of A Human A-Type Potassium Channel Accelerating
Factor Dppx, A Member Of The Dipeptidyl Aminopeptidase
Family
pdb|1XFD|B Chain B, Structure Of A Human A-Type Potassium Channel Accelerating
Factor Dppx, A Member Of The Dipeptidyl Aminopeptidase
Family
pdb|1XFD|C Chain C, Structure Of A Human A-Type Potassium Channel Accelerating
Factor Dppx, A Member Of The Dipeptidyl Aminopeptidase
Family
pdb|1XFD|D Chain D, Structure Of A Human A-Type Potassium Channel Accelerating
Factor Dppx, A Member Of The Dipeptidyl Aminopeptidase
Family
Length = 723
Score = 85.9 bits (211), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 69/117 (58%), Gaps = 4/117 (3%)
Query: 2 GGPGSNIISDRFSIDFHTYLVSKRHVIVVHIDARGSAYRSKEQEHSVYRNLGRYEIADQI 61
G PGS ++++F + + T +VS +VV D RGS ++ + H V R LG E DQ+
Sbjct: 504 GTPGSQSVAEKFEVSWETVMVSSHGAVVVKCDGRGSGFQGTKLLHEVRRRLGLLEEKDQM 563
Query: 62 AVVKYLTERFQFIDKTKVGIWGWSYGGFATAMVLATDTQN---VFKCGVSVAPVTNF 115
V+ + + Q+ID+T+V ++G YGG+ + +L +N F CG +++P+T+F
Sbjct: 564 EAVRTMLKE-QYIDRTRVAVFGKDYGGYLSTYILPAKGENQGQTFTCGSALSPITDF 619
>pdb|2ECF|A Chain A, Crystal Structure Of Dipeptidyl Aminopeptidase Iv From
Stenotrophomonas Maltophilia
Length = 741
Score = 74.7 bits (182), Expect = 1e-14, Method: Composition-based stats.
Identities = 42/119 (35%), Positives = 71/119 (59%), Gaps = 7/119 (5%)
Query: 1 YGGPGSNIISD----RFSIDFHTYLVSKRHVIVVHIDARGSAYRSKEQEHSVYRNLGRYE 56
YGGP S ++D R F+ YL + +V V +D RG+ R ++ ++Y G E
Sbjct: 524 YGGPASQTVTDSWPGRGDHLFNQYLAQQGYV-VFSLDNRGTPRRGRDFGGALYGKQGTVE 582
Query: 57 IADQIAVVKYLTERFQFIDKTKVGIWGWSYGGFATAMVLATDTQNVFKCGVSVAPVTNF 115
+ADQ+ V +L ++ ++D ++G+ GWS GG+ T M+LA + + + CGV+ APVT++
Sbjct: 583 VADQLRGVAWLKQQ-PWVDPARIGVQGWSNGGYMTLMLLAKASDS-YACGVAGAPVTDW 639
>pdb|2Z3W|A Chain A, Prolyl Tripeptidyl Aminopeptidase Mutant E636a
pdb|2Z3Z|A Chain A, Prolyl Tripeptidyl Aminopeptidase Mutant E636a Complexd
With An Inhibitor
Length = 706
Score = 74.3 bits (181), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 70/117 (59%), Gaps = 4/117 (3%)
Query: 1 YGGPGSNIISD--RFSIDFHTYLVSKRHVIVVHIDARGSAYRSKEQEHSVYRNLGRYEIA 58
YGGP + +++ R S+ ++++ V +D+RGSA R E ++R LG+ E+A
Sbjct: 492 YGGPHAQLVTKTWRSSVGGWDIYMAQKGYAVFTVDSRGSANRGAAFEQVIHRRLGQTEMA 551
Query: 59 DQIAVVKYLTERFQFIDKTKVGIWGWSYGGFATAMVLATDTQNVFKCGVSVAPVTNF 115
DQ+ V +L + ++D ++G+ GWSYGGF T ++ T +VFK GV+ PV ++
Sbjct: 552 DQMCGVDFLKSQ-SWVDADRIGVHGWSYGGFMTTNLMLTHG-DVFKVGVAGGPVIDW 606
>pdb|2D5L|A Chain A, Crystal Structure Of Prolyl Tripeptidyl Aminopeptidase
From Porphyromonas Gingivalis
pdb|2EEP|A Chain A, Prolyl Tripeptidyl Aminopeptidase Complexed With An
Inhibitor
Length = 706
Score = 74.3 bits (181), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 70/117 (59%), Gaps = 4/117 (3%)
Query: 1 YGGPGSNIISD--RFSIDFHTYLVSKRHVIVVHIDARGSAYRSKEQEHSVYRNLGRYEIA 58
YGGP + +++ R S+ ++++ V +D+RGSA R E ++R LG+ E+A
Sbjct: 492 YGGPHAQLVTKTWRSSVGGWDIYMAQKGYAVFTVDSRGSANRGAAFEQVIHRRLGQTEMA 551
Query: 59 DQIAVVKYLTERFQFIDKTKVGIWGWSYGGFATAMVLATDTQNVFKCGVSVAPVTNF 115
DQ+ V +L + ++D ++G+ GWSYGGF T ++ T +VFK GV+ PV ++
Sbjct: 552 DQMCGVDFLKSQ-SWVDADRIGVHGWSYGGFMTTNLMLTHG-DVFKVGVAGGPVIDW 606
>pdb|2DCM|A Chain A, The Crystal Structure Of S603a Mutated Prolyl Tripeptidyl
Aminopeptidase Complexed With Substrate
Length = 706
Score = 73.2 bits (178), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 70/117 (59%), Gaps = 4/117 (3%)
Query: 1 YGGPGSNIISD--RFSIDFHTYLVSKRHVIVVHIDARGSAYRSKEQEHSVYRNLGRYEIA 58
YGGP + +++ R S+ ++++ V +D+RGSA R E ++R LG+ E+A
Sbjct: 492 YGGPHAQLVTKTWRSSVGGWDIYMAQKGYAVFTVDSRGSANRGAAFEQVIHRRLGQTEMA 551
Query: 59 DQIAVVKYLTERFQFIDKTKVGIWGWSYGGFATAMVLATDTQNVFKCGVSVAPVTNF 115
DQ+ V +L + ++D ++G+ GW+YGGF T ++ T +VFK GV+ PV ++
Sbjct: 552 DQMCGVDFLKSQ-SWVDADRIGVHGWAYGGFMTTNLMLTHG-DVFKVGVAGGPVIDW 606
>pdb|1QP8|A Chain A, Crystal Structure Of A Putative Formate Dehydrogenase From
Pyrobaculum Aerophilum
pdb|1QP8|B Chain B, Crystal Structure Of A Putative Formate Dehydrogenase From
Pyrobaculum Aerophilum
Length = 303
Score = 32.7 bits (73), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 45 EHSVYRNLGRYEIADQIAVVKYLTERFQFIDKTKVGIWGWSYGGFA 90
E +V+ N+GR E+ D+ V++ L ER QFI + V W W FA
Sbjct: 202 EDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDV--W-WGRNDFA 244
>pdb|3HAM|A Chain A, Structure Of The Gentamicin-Aph(2")-Iia Complex
pdb|3HAM|B Chain B, Structure Of The Gentamicin-Aph(2")-Iia Complex
pdb|3HAV|A Chain A, Structure Of The Streptomycin-Atp-Aph(2")-Iia Ternary
Complex
pdb|3HAV|B Chain B, Structure Of The Streptomycin-Atp-Aph(2")-Iia Ternary
Complex
pdb|3HAV|C Chain C, Structure Of The Streptomycin-Atp-Aph(2")-Iia Ternary
Complex
Length = 299
Score = 30.0 bits (66), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 16 DFHTYLVSKRHVIVVHIDARGSAYRSKEQEHSVYRNLGRYEIADQIAVVKYLTERFQFI 74
D T+L ++++V V + R S S+++E +YR L +++ QI V Y ++RF +
Sbjct: 29 DSDTFLCNEQYV--VKVPKRDSVRISQKREFELYRFLENCKLSYQIPAVVYQSDRFNIM 85
>pdb|3D59|A Chain A, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase
pdb|3D59|B Chain B, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase
pdb|3D5E|A Chain A, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By Paraoxon
pdb|3D5E|B Chain B, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By Paraoxon
pdb|3F97|A Chain A, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By Soman
pdb|3F97|B Chain B, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By Soman
pdb|3F98|A Chain A, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By Tabun
pdb|3F98|B Chain B, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By Tabun
pdb|3F98|C Chain C, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By Tabun
pdb|3F9C|A Chain A, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By
Diisopropylfluorophosphate
pdb|3F9C|B Chain B, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By
Diisopropylfluorophosphate
Length = 383
Score = 29.6 bits (65), Expect = 0.44, Method: Composition-based stats.
Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 74 IDKTKVGIWGWSYGGFATAMVLATDTQNVFKCGVSV 109
ID+ K+ + G S+GG L+ D + F+CG+++
Sbjct: 216 IDREKIAVIGHSFGGATVIQTLSEDQR--FRCGIAL 249
>pdb|3UZR|A Chain A, Crystal Structure Of Aminoglycoside Phosphotransferase
Aph(2'')-Ib, Apo Form
pdb|4DCA|A Chain A, Crystal Structure Of Aminoglycoside Phosphotransferase
Aph(2'')-Ib, Adp-Bound
Length = 320
Score = 28.9 bits (63), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Query: 16 DFHTYLVSKRHVIVVHIDARGSAYRSKEQEHSVYRNLGRYEIADQIAVVKYLTERF 71
D T+L ++++V V + R S S+++E +YR L +++ QI V Y ++RF
Sbjct: 50 DSDTFLCNEQYV--VKVPKRDSVRISQKRELELYRFLENCKLSYQIPAVVYQSDRF 103
>pdb|3KSR|A Chain A, Crystal Structure Of A Putative Serine Hydrolase (Xcc3885)
From Xanthomonas Campestris Pv. Campestris At 2.69 A
Resolution
Length = 290
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 14/84 (16%)
Query: 18 HTYLVSKRHV-----IVVHIDARG-SAYRSKEQEHSVYRNLGRYEIA-DQIAVVKYLTER 70
H LV R I D RG Y S Q + +NL + A DQ+A + Y
Sbjct: 42 HHSLVRAREAVGLGCICXTFDLRGHEGYASXRQSVTRAQNLDDIKAAYDQLASLPY---- 97
Query: 71 FQFIDKTKVGIWGWSYGGFATAMV 94
+D + + G SYGG+ +A++
Sbjct: 98 ---VDAHSIAVVGLSYGGYLSALL 118
>pdb|3F96|A Chain A, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By Sarin
pdb|3F96|B Chain B, Crystal Structure Of Human Plasma Platelet Activating
Factor Acetylhydrolase Covalently Inhibited By Sarin
Length = 383
Score = 27.7 bits (60), Expect = 1.5, Method: Composition-based stats.
Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 74 IDKTKVGIWGWSYGGFATAMVLATDTQNVFKCGVSV 109
ID+ K+ + G +GG L+ D + F+CG+++
Sbjct: 216 IDREKIAVIGHXFGGATVIQTLSEDQR--FRCGIAL 249
>pdb|2QZP|A Chain A, Crystal Structure Of Mutation Of An Acylptide
HydrolaseESTERASE FROM AEROPYRUM PERNIX K1
pdb|2QZP|B Chain B, Crystal Structure Of Mutation Of An Acylptide
HydrolaseESTERASE FROM AEROPYRUM PERNIX K1
Length = 562
Score = 27.3 bits (59), Expect = 2.0, Method: Composition-based stats.
Identities = 31/115 (26%), Positives = 50/115 (43%), Gaps = 7/115 (6%)
Query: 1 YGGPGSNIISDRFSIDFHTYLVSKRHVIVVHIDARGSAYRSKEQEHSVYRNLGRYEIADQ 60
+GGP D S D ++ VV + RGS +E + + E+ D
Sbjct: 347 HGGP---FAEDSDSWDTFAASLAAAGFHVVMPNYRGSTGYGEEWRLKIIGDPCGGELEDV 403
Query: 61 IAVVKYLTERFQFIDKTKVGIWGWSYGGFATAMVLATDTQNVFKCGVSVAPVTNF 115
A ++ E +++ I G+SYGG+ T L T +FK GV+ A V ++
Sbjct: 404 SAAARWARESGL---ASELYIMGYSYGGYMTLCAL-TMKPGLFKAGVAGASVVDW 454
>pdb|3O4J|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4J|B Chain B, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4J|C Chain C, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4J|D Chain D, Structure And Catalysis Of Acylaminoacyl Peptidase
Length = 582
Score = 27.3 bits (59), Expect = 2.0, Method: Composition-based stats.
Identities = 31/115 (26%), Positives = 50/115 (43%), Gaps = 7/115 (6%)
Query: 1 YGGPGSNIISDRFSIDFHTYLVSKRHVIVVHIDARGSAYRSKEQEHSVYRNLGRYEIADQ 60
+GGP D S D ++ VV + RGS +E + + E+ D
Sbjct: 367 HGGP---FAEDSDSWDTFAASLAAAGFHVVMPNYRGSTGYGEEWRLKIIGDPCGGELEDV 423
Query: 61 IAVVKYLTERFQFIDKTKVGIWGWSYGGFATAMVLATDTQNVFKCGVSVAPVTNF 115
A ++ E +++ I G+SYGG+ T L T +FK GV+ A V ++
Sbjct: 424 SAAARWARESGL---ASELYIMGYSYGGYMTLCAL-TMKPGLFKAGVAGASVVDW 474
>pdb|3O4H|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4H|B Chain B, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4H|C Chain C, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4H|D Chain D, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4I|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4I|B Chain B, Structure And Catalysis Of Acylaminoacyl Peptidase
Length = 582
Score = 27.3 bits (59), Expect = 2.0, Method: Composition-based stats.
Identities = 31/115 (26%), Positives = 50/115 (43%), Gaps = 7/115 (6%)
Query: 1 YGGPGSNIISDRFSIDFHTYLVSKRHVIVVHIDARGSAYRSKEQEHSVYRNLGRYEIADQ 60
+GGP D S D ++ VV + RGS +E + + E+ D
Sbjct: 367 HGGP---FAEDSDSWDTFAASLAAAGFHVVMPNYRGSTGYGEEWRLKIIGDPCGGELEDV 423
Query: 61 IAVVKYLTERFQFIDKTKVGIWGWSYGGFATAMVLATDTQNVFKCGVSVAPVTNF 115
A ++ E +++ I G+SYGG+ T L T +FK GV+ A V ++
Sbjct: 424 SAAARWARESGL---ASELYIMGYSYGGYMTLCAL-TMKPGLFKAGVAGASVVDW 474
>pdb|1VE6|A Chain A, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM
Aeropyrum Pernix K1
pdb|1VE6|B Chain B, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM
Aeropyrum Pernix K1
pdb|1VE7|A Chain A, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM
AEROPYRUM Pernix K1 In Complex With P-Nitrophenyl
Phosphate
pdb|1VE7|B Chain B, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM
AEROPYRUM Pernix K1 In Complex With P-Nitrophenyl
Phosphate
pdb|2HU5|A Chain A, Binding Of Inhibitors By Acylaminoacyl-Peptidase
pdb|2HU5|B Chain B, Binding Of Inhibitors By Acylaminoacyl-Peptidase
pdb|2HU7|A Chain A, Binding Of Inhibitors By Acylaminoacyl Peptidase
pdb|2HU7|B Chain B, Binding Of Inhibitors By Acylaminoacyl Peptidase
pdb|3O4G|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4G|B Chain B, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4G|C Chain C, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4G|D Chain D, Structure And Catalysis Of Acylaminoacyl Peptidase
Length = 582
Score = 27.3 bits (59), Expect = 2.0, Method: Composition-based stats.
Identities = 31/115 (26%), Positives = 50/115 (43%), Gaps = 7/115 (6%)
Query: 1 YGGPGSNIISDRFSIDFHTYLVSKRHVIVVHIDARGSAYRSKEQEHSVYRNLGRYEIADQ 60
+GGP D S D ++ VV + RGS +E + + E+ D
Sbjct: 367 HGGP---FAEDSDSWDTFAASLAAAGFHVVMPNYRGSTGYGEEWRLKIIGDPCGGELEDV 423
Query: 61 IAVVKYLTERFQFIDKTKVGIWGWSYGGFATAMVLATDTQNVFKCGVSVAPVTNF 115
A ++ E +++ I G+SYGG+ T L T +FK GV+ A V ++
Sbjct: 424 SAAARWARESGL---ASELYIMGYSYGGYMTLCAL-TMKPGLFKAGVAGASVVDW 474
>pdb|2QR5|A Chain A, Aeropyrum Pernix Acylaminoacyl Peptidase, H367a Mutant
pdb|2QR5|B Chain B, Aeropyrum Pernix Acylaminoacyl Peptidase, H367a Mutant
Length = 582
Score = 27.3 bits (59), Expect = 2.1, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 81 IWGWSYGGFATAMVLATDTQNVFKCGVSVAPVTNF 115
I G+SYGG+ T L T +FK GV+ A V ++
Sbjct: 441 IMGYSYGGYMTLCAL-TMKPGLFKAGVAGASVVDW 474
>pdb|2GZR|A Chain A, Enterobactin And Salmochelin Hydrolase Iroe
pdb|2GZS|A Chain A, Enterobactin Hydolase Iroe Complex With Dfp
Length = 278
Score = 26.6 bits (57), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 7/41 (17%)
Query: 49 YRNLGRYEIADQIAVVKYLTERFQFIDKTKVGIWGWSYGGF 89
+R L IA ++ E+ ID+ + G+WG SYGG
Sbjct: 120 FRQLLETRIAPKV-------EQGLNIDRQRRGLWGHSYGGL 153
>pdb|3MVE|A Chain A, Crystal Structure Of A Novel Pyruvate Decarboxylase
pdb|3MVE|B Chain B, Crystal Structure Of A Novel Pyruvate Decarboxylase
Length = 415
Score = 25.8 bits (55), Expect = 6.2, Method: Composition-based stats.
Identities = 17/91 (18%), Positives = 40/91 (43%), Gaps = 8/91 (8%)
Query: 22 VSKRHVIVVHIDARGSAYRSKEQEHSVYRNLGRYEIADQIAVVKYLTERFQFIDKTKVGI 81
++K + ++ +D Y SK Y L + + + ++ ++D +VG+
Sbjct: 217 LAKHDIAMLTVDMPSVGYSSKYPLTEDYSRLHQAVLNELFSI--------PYVDHHRVGL 268
Query: 82 WGWSYGGFATAMVLATDTQNVFKCGVSVAPV 112
G+ +GG A + + + + C + AP+
Sbjct: 269 IGFRFGGNAMVRLSFLEQEKIKACVILGAPI 299
>pdb|3OUR|A Chain A, Crystal Structure Of Complex Between Eiia And A Novel
Pyruvate Decarboxylase
pdb|3OUR|C Chain C, Crystal Structure Of Complex Between Eiia And A Novel
Pyruvate Decarboxylase
pdb|3OUR|E Chain E, Crystal Structure Of Complex Between Eiia And A Novel
Pyruvate Decarboxylase
pdb|3OUR|G Chain G, Crystal Structure Of Complex Between Eiia And A Novel
Pyruvate Decarboxylase
Length = 435
Score = 25.8 bits (55), Expect = 6.3, Method: Composition-based stats.
Identities = 17/91 (18%), Positives = 40/91 (43%), Gaps = 8/91 (8%)
Query: 22 VSKRHVIVVHIDARGSAYRSKEQEHSVYRNLGRYEIADQIAVVKYLTERFQFIDKTKVGI 81
++K + ++ +D Y SK Y L + + + ++ ++D +VG+
Sbjct: 237 LAKHDIAMLTVDMPSVGYSSKYPLTEDYSRLHQAVLNELFSI--------PYVDHHRVGL 288
Query: 82 WGWSYGGFATAMVLATDTQNVFKCGVSVAPV 112
G+ +GG A + + + + C + AP+
Sbjct: 289 IGFRFGGNAMVRLSFLEQEKIKACVILGAPI 319
>pdb|3KFF|A Chain A, Major Mouse Urinary Protein Iv Complexed With
2-Sec-Butyl-4,5- Dihydrothiazole
pdb|3KFG|A Chain A, Major Mouse Urinary Protein Iv Complexed With 2-Heptanone
pdb|3KFH|A Chain A, Major Mouse Urinary Protein Iv Complexed With
2-Ethylhexanol
pdb|3KFI|A Chain A, Major Mouse Urinary Protein Iv Complexed With
2,5-Dimethylpyrazine
Length = 162
Score = 25.4 bits (54), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 68 TERFQFIDKT-KVGIWGWSYGGFATAMVLATDTQN 101
+E F DKT K G + Y GF T +L TD N
Sbjct: 65 SEIFLVADKTEKAGEYSVMYDGFNTFTILKTDYDN 99
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,433,945
Number of Sequences: 62578
Number of extensions: 118988
Number of successful extensions: 456
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 369
Number of HSP's gapped (non-prelim): 46
length of query: 117
length of database: 14,973,337
effective HSP length: 80
effective length of query: 37
effective length of database: 9,967,097
effective search space: 368782589
effective search space used: 368782589
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 45 (21.9 bits)