RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14549
(117 letters)
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast
activation protein alpha,fapalpha,
dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo
sapiens}
Length = 719
Score = 165 bits (418), Expect = 3e-49
Identities = 48/117 (41%), Positives = 80/117 (68%), Gaps = 2/117 (1%)
Query: 1 YGGPGSNIISDRFSIDFHTYLVSKRHVIVVHIDARGSAYRSKEQEHSVYRNLGRYEIADQ 60
YGGP S + F++++ +YL SK +++ +D RG+A++ + ++VYR LG YE+ DQ
Sbjct: 503 YGGPCSQSVRSVFAVNWISYLASKEGMVIALVDGRGTAFQGDKLLYAVYRKLGVYEVEDQ 562
Query: 61 IAVVKYLTERFQFIDKTKVGIWGWSYGGFATAMVLATDTQNVFKCGVSVAPVTNFLY 117
I V+ E FID+ ++ IWGWSYGG+ +++ LA+ +FKCG++VAPV+++ Y
Sbjct: 563 ITAVRKFIEM-GFIDEKRIAIWGWSYGGYVSSLALASG-TGLFKCGIAVAPVSSWEY 617
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes,
novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A
{Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A*
2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A*
1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A*
3bjm_A* 3eio_A* ...
Length = 740
Score = 162 bits (412), Expect = 3e-48
Identities = 48/117 (41%), Positives = 71/117 (60%), Gaps = 2/117 (1%)
Query: 1 YGGPGSNIISDRFSIDFHTYLVSKRHVIVVHIDARGSAYRSKEQEHSVYRNLGRYEIADQ 60
Y GP S F +++ TYL S ++IV D RGS Y+ + H++ R LG +E+ DQ
Sbjct: 509 YAGPCSQKADTVFRLNWATYLASTENIIVASFDGRGSGYQGDKIMHAINRRLGTFEVEDQ 568
Query: 61 IAVVKYLTERFQFIDKTKVGIWGWSYGGFATAMVLATDTQNVFKCGVSVAPVTNFLY 117
I + + F+D ++ IWGWSYGG+ T+MVL + VFKCG++VAPV+ + Y
Sbjct: 569 IEAARQF-SKMGFVDNKRIAIWGWSYGGYVTSMVLGSG-SGVFKCGIAVAPVSRWEY 623
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase
6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG
NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1
c.69.1.24
Length = 723
Score = 161 bits (410), Expect = 6e-48
Identities = 39/120 (32%), Positives = 68/120 (56%), Gaps = 4/120 (3%)
Query: 1 YGGPGSNIISDRFSIDFHTYLVSKRHVIVVHIDARGSAYRSKEQEHSVYRNLGRYEIADQ 60
G PGS ++++F + + T +VS +VV D RGS ++ + H V R LG E DQ
Sbjct: 503 DGTPGSQSVAEKFEVSWETVMVSSHGAVVVKCDGRGSGFQGTKLLHEVRRRLGLLEEKDQ 562
Query: 61 IAVVKYLTERFQFIDKTKVGIWGWSYGGFATAMVLAT---DTQNVFKCGVSVAPVTNFLY 117
+ V+ + + Q+ID+T+V ++G YGG+ + +L + F CG +++P+T+F
Sbjct: 563 MEAVRTMLKE-QYIDRTRVAVFGKDYGGYLSTYILPAKGENQGQTFTCGSALSPITDFKL 621
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase
family S9, hydrolase; 2.80A {Stenotrophomonas
maltophilia}
Length = 741
Score = 156 bits (396), Expect = 5e-46
Identities = 40/121 (33%), Positives = 70/121 (57%), Gaps = 7/121 (5%)
Query: 1 YGGPGSNIISDRFSID----FHTYLVSKRHVIVVHIDARGSAYRSKEQEHSVYRNLGRYE 56
YGGP S ++D + F+ YL + +V +D RG+ R ++ ++Y G E
Sbjct: 524 YGGPASQTVTDSWPGRGDHLFNQYLAQQG-YVVFSLDNRGTPRRGRDFGGALYGKQGTVE 582
Query: 57 IADQIAVVKYLTERFQFIDKTKVGIWGWSYGGFATAMVLATDTQNVFKCGVSVAPVTNFL 116
+ADQ+ V +L ++ ++D ++G+ GWS GG+ T M+LA + + + CGV+ APVT++
Sbjct: 583 VADQLRGVAWLKQQP-WVDPARIGVQGWSNGGYMTLMLLAKAS-DSYACGVAGAPVTDWG 640
Query: 117 Y 117
Sbjct: 641 L 641
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl
oligopeptidase family, serine PR proline-specific
peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas
gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Length = 706
Score = 153 bits (389), Expect = 4e-45
Identities = 41/120 (34%), Positives = 67/120 (55%), Gaps = 6/120 (5%)
Query: 1 YGGPGSNIISDRFSID---FHTYLVSKRHVIVVHIDARGSAYRSKEQEHSVYRNLGRYEI 57
YGGP + +++ + + Y+ K V +D+RGSA R E ++R LG+ E+
Sbjct: 492 YGGPHAQLVTKTWRSSVGGWDIYMAQKG-YAVFTVDSRGSANRGAAFEQVIHRRLGQTEM 550
Query: 58 ADQIAVVKYLTERFQFIDKTKVGIWGWSYGGFATAMVLATDTQNVFKCGVSVAPVTNFLY 117
ADQ+ V +L + ++D ++G+ GWSYGGF T ++ T VFK GV+ PV ++
Sbjct: 551 ADQMCGVDFLKSQ-SWVDADRIGVHGWSYGGFMTTNLMLTHGD-VFKVGVAGGPVIDWNR 608
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta
propeller, hydrolase, oligop SIZE selectivity; HET: GOL;
1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A*
1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Length = 582
Score = 77.5 bits (191), Expect = 4e-18
Identities = 30/115 (26%), Positives = 48/115 (41%), Gaps = 7/115 (6%)
Query: 2 GGPGSNIISDRFSIDFHTYLVSKRHVIVVHIDARGSAYRSKEQEHSVYRNLGRYEIADQI 61
GGP + SD + L + VV + RGS +E + + E+ D
Sbjct: 368 GGPFAED-SDSWDTFAA-SLAA-AGFHVVMPNYRGSTGYGEEWRLKIIGDPCGGELEDVS 424
Query: 62 AVVKYLTERFQFIDKTKVGIWGWSYGGFATAMVLATDTQNVFKCGVSVAPVTNFL 116
A ++ E + + I G+SYGG+ T L +FK GV+ A V ++
Sbjct: 425 AAARWARESG-LASE--LYIMGYSYGGYMTLCALTMKP-GLFKAGVAGASVVDWE 475
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces
morookaensis} PDB: 3azp_A 3azq_A
Length = 662
Score = 72.9 bits (179), Expect = 1e-16
Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 6/116 (5%)
Query: 1 YGGPGSNIISDRFSIDFHTYLVSKRHVIVVHIDARGSAYRSKEQEHSVYRNLGRYEIADQ 60
+GGP ++ + +D Y S R + V ++ GS + + G ++ D
Sbjct: 431 HGGP-TSRVPAVLDLDVA-YFTS-RGIGVADVNYGGSTGYGRAYRERLRGRWGVVDVEDC 487
Query: 61 IAVVKYLTERFQFIDKTKVGIWGWSYGGFATAMVLATDTQNVFKCGVSVAPVTNFL 116
AV L E D+ ++ + G S GG+ A L + +V+ CG + PV + L
Sbjct: 488 AAVATALAEEG-TADRARLAVRGGSAGGWTAASSLVST--DVYACGTVLYPVLDLL 540
>3ksr_A Putative serine hydrolase; catalytic triad, structural genomics,
JOIN for structural genomics, JCSG; 2.69A {Xanthomonas
campestris PV}
Length = 290
Score = 59.1 bits (143), Expect = 8e-12
Identities = 18/114 (15%), Positives = 35/114 (30%), Gaps = 12/114 (10%)
Query: 1 YGGPGSNIISDRFSIDFHTYLVSKRHVIVVHIDARGSAYRSKEQEHSVYRNLGRYEIADQ 60
+G GS + I + D RG + ++ + D
Sbjct: 35 HGWGGS-----QHHSLVRAREAVGLGCICMTFDLRGHEGYASMRQSVTRAQ----NLDDI 85
Query: 61 IAVVKYLTERFQFIDKTKVGIWGWSYGGFATAMVLATDTQNVFKCGVSVAPVTN 114
A L ++D + + G SYGG+ +A++ V + +
Sbjct: 86 KAAYDQLASL-PYVDAHSIAVVGLSYGGYLSALLTRER--PVEWLALRSPALYK 136
>3doh_A Esterase; alpha-beta hydrolase, beta sheet; 2.60A {Thermotoga
maritima} PDB: 3doi_A
Length = 380
Score = 57.4 bits (138), Expect = 3e-11
Identities = 16/122 (13%), Positives = 40/122 (32%), Gaps = 9/122 (7%)
Query: 1 YGGPGS------NIISDRFSIDFHTYLVSKRH-VIVVHIDARGSAYRSKEQEHSVYRNLG 53
+G + +R ++ + H V+ ++ S
Sbjct: 181 HGAGERGTDNYLQVAGNRGAVVWAQPRYQVVHPCFVLAPQCPPNSSWSTLFTDRENPFNP 240
Query: 54 RYEIADQIAVVKYLTERFQFIDKTKVGIWGWSYGGFATAMVLATDTQNVFKCGVSVAPVT 113
+ I +++ L + + ID+ ++ I G S GG+ T + +F + +
Sbjct: 241 EKPLLAVIKIIRKLLDEYN-IDENRIYITGLSMGGYGT-WTAIMEFPELFAAAIPICGGG 298
Query: 114 NF 115
+
Sbjct: 299 DV 300
>3fcy_A Xylan esterase 1; alpha/beta hydrolase, carbohydrate esterase, CE7;
2.10A {Thermoanaerobacterium SP}
Length = 346
Score = 56.4 bits (136), Expect = 8e-11
Identities = 20/105 (19%), Positives = 36/105 (34%), Gaps = 19/105 (18%)
Query: 28 IVVHIDARGSAYRSKEQEHSVYRNLG----------------RYEIADQIAVVKYLTERF 71
VV +D RG +S++ L R+ D + +
Sbjct: 136 TVVAMDVRGQGGQSQDVGGVTGNTLNGHIIRGLDDDADNMLFRHIFLDTAQLAGIVMNMP 195
Query: 72 QFIDKTKVGIWGWSYGGFATAMVLATDTQNVFKCGVSVAPVTNFL 116
+D+ +VG+ G S GG + A + + + VS P +
Sbjct: 196 -EVDEDRVGVMGPSQGGGLSLACAALEPR--VRKVVSEYPFLSDY 237
>1l7a_A Cephalosporin C deacetylase; structural genomics, alpha-beta-alpha
sandwich, PSI, protein structure initiative; 1.50A
{Bacillus subtilis} SCOP: c.69.1.25 PDB: 1odt_C 1ods_A
3fvt_A 3fvr_A 3fyu_A* 2xlb_A 2xlc_A 3fyt_A* 3fyu_B*
Length = 318
Score = 55.5 bits (134), Expect = 2e-10
Identities = 17/129 (13%), Positives = 34/129 (26%), Gaps = 23/129 (17%)
Query: 2 GGPGSNIISDRFSIDFHTYLV-SKRHVIVVHIDARGSAYRSKEQEHS------------- 47
G + + H + + + RG
Sbjct: 90 GYNA------SYDGEIHEMVNWALHGYATFGMLVRGQQRSEDTSISPHGHALGWMTKGIL 143
Query: 48 -VYRNLGRYEIADQIAVVKYLTERFQFIDKTKVGIWGWSYGGFATAMVLATDTQNVFKCG 106
R D + ++ ++ +D+T++G+ G S GG T A
Sbjct: 144 DKDTYYYRGVYLDAVRALEVISSFD-EVDETRIGVTGGSQGGGLTIAAAALSDI-PKAAV 201
Query: 107 VSVAPVTNF 115
++NF
Sbjct: 202 ADYPYLSNF 210
>2jbw_A Dhpon-hydrolase, 2,6-dihydroxy-pseudo-oxynicotine hydrolase;
alpha/beta hydrolase, META-cleavage pathway; 2.1A
{Arthrobacter nicotinovorans} SCOP: c.69.1.41
Length = 386
Score = 53.5 bits (128), Expect = 1e-09
Identities = 18/87 (20%), Positives = 29/87 (33%), Gaps = 9/87 (10%)
Query: 29 VVHIDARGSAYRSKEQEHSVYRNLGRYEIADQIAVVKYLTERFQFIDKTKVGIWGWSYGG 88
D G + + G YE AVV LT+ + I +G+ G S GG
Sbjct: 182 TATFDGPGQGEMFEYKRI-----AGDYE-KYTSAVVDLLTKL-EAIRNDAIGVLGRSLGG 234
Query: 89 FATAMVLATDTQNVFKCGVSVAPVTNF 115
A + + +S ++
Sbjct: 235 NYALKSAACEPR--LAACISWGGFSDL 259
>3nuz_A Putative acetyl xylan esterase; structural genomics, joint center
for structural genomics, J protein structure initiative,
PSI-biology; 2.30A {Bacteroides fragilis}
Length = 398
Score = 52.5 bits (125), Expect = 2e-09
Identities = 15/110 (13%), Positives = 34/110 (30%), Gaps = 19/110 (17%)
Query: 24 KRHVIVVHIDARGSAYRSKEQEH----------------SVYRNLGRYEIADQIAVVKYL 67
K I V +D + S + + + + Y + V+ ++
Sbjct: 162 KEGYIAVAVDNPAAGEASDLERYTLGSNYDYDVVSRYLLELGWSYLGYASYLDMQVLNWM 221
Query: 68 TERFQFIDKTKVGIWGWSYGGFATAMVLATDTQNVFKCGVSVAPVTNFLY 117
+ + I K ++ + G+S G ++ DT V +
Sbjct: 222 KTQ-KHIRKDRIVVSGFSLGTEPMMVLGTLDTS--IYAFVYNDFLCQTQE 268
>3g8y_A SUSD/RAGB-associated esterase-like protein; structural genom joint
center for structural genomics, JCSG; HET: MSE; 1.90A
{Bacteroides vulgatus atcc 8482}
Length = 391
Score = 52.2 bits (124), Expect = 3e-09
Identities = 14/110 (12%), Positives = 33/110 (30%), Gaps = 19/110 (17%)
Query: 24 KRHVIVVHIDARGSAYRSKEQEHS----------------VYRNLGRYEIADQIAVVKYL 67
K + V +D + S + + + + Y + V+ ++
Sbjct: 157 KEGYVAVAVDNAAAGEASDLECYDKGWNYDYDVVSRFLLELGWSWLGYTSYLDMQVLNWM 216
Query: 68 TERFQFIDKTKVGIWGWSYGGFATAMVLATDTQNVFKCGVSVAPVTNFLY 117
+ +I K ++ I G+S G ++ D V +
Sbjct: 217 KAQ-SYIRKDRIVISGFSLGTEPMMVLGVLDKD--IYAFVYNDFLCQTQE 263
>1vlq_A Acetyl xylan esterase; TM0077, structural genomics, JCSG, PR
structure initiative, PSI, joint center for structural
GENO hydrolase; 2.10A {Thermotoga maritima} SCOP:
c.69.1.25 PDB: 3m81_A 3m83_A* 3m82_A*
Length = 337
Score = 45.7 bits (108), Expect = 5e-07
Identities = 13/59 (22%), Positives = 21/59 (35%), Gaps = 3/59 (5%)
Query: 53 GRYEIADQIAVVKYLTERFQFIDKTKVGIWGWSYGGFATAMVLATDTQNVFKCGVSVAP 111
R D + V+ +D+ ++ I G S GG V A + K + P
Sbjct: 169 YRRVFTDAVRAVEAAASFP-QVDQERIVIAGGSQGGGIALAVSALSKK--AKALLCDVP 224
>2wtm_A EST1E; hydrolase; 1.60A {Clostridium proteoclasticum} PDB: 2wtn_A*
Length = 251
Score = 45.0 bits (107), Expect = 6e-07
Identities = 13/60 (21%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
Query: 56 EIADQIAVVKYLTERFQFIDKTKVGIWGWSYGGFATAMVLATDTQNVFKCGVSVAPVTNF 115
+ + +AVV Y + T + + G S GG + M+ A +++ K + ++P
Sbjct: 82 WLTNILAVVDYAKKLDF---VTDIYMAGHSQGG-LSVMLAAAMERDIIKALIPLSPAAMI 137
>3mve_A FRSA, UPF0255 protein VV1_0328; FRSA,fermentation/respiration
switch protein, hydrolase ACTI lyase; 2.20A {Vibrio
vulnificus} PDB: 3our_A
Length = 415
Score = 45.0 bits (106), Expect = 8e-07
Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 62 AVVKYLTERFQFIDKTKVGIWGWSYGGFATAMVLATDTQNVFKCGVSVAPVTNFLY 117
AV+ L ++D +VG+ G+ +GG A + L+ Q K V + + ++
Sbjct: 250 AVLNELFSI-PYVDHHRVGLIGFRFGGNA-MVRLSFLEQEKIKACVILGAPIHDIF 303
>3k2i_A Acyl-coenzyme A thioesterase 4; alpha/beta hydrolase fold
seven-stranded beta-sandwich, structural genomics,
structural genomics consortium, SGC; 2.40A {Homo
sapiens}
Length = 422
Score = 41.3 bits (96), Expect = 2e-05
Identities = 12/71 (16%), Positives = 24/71 (33%), Gaps = 4/71 (5%)
Query: 50 RNLGRYEIADQIAVVKYLTERFQFIDKTKVGIWGWSYGGFATAMVLATD---TQNVFKCG 106
N+ + V Y+ + Q + +G+ G S G + + + V G
Sbjct: 199 NNMDNISLEYFEEAVCYMLQHPQ-VKGPGIGLLGISLGADICLSMASFLKNVSATVSING 257
Query: 107 VSVAPVTNFLY 117
++ T Y
Sbjct: 258 SGISGNTAINY 268
>2hdw_A Hypothetical protein PA2218; alpha/beta hydrolase fold, structural
genomics, PSI, structure initiative; 2.00A {Pseudomonas
aeruginosa}
Length = 367
Score = 40.8 bits (95), Expect = 3e-05
Identities = 10/58 (17%), Positives = 22/58 (37%), Gaps = 3/58 (5%)
Query: 55 YEIADQIAVVKYLTERFQFIDKTKVGIWGWSYGGFATAMVLATDTQNVFKCGVSVAPV 112
D A V +++ +++ ++G+ G G +A D + K V+
Sbjct: 150 INTEDFSAAVDFISLL-PEVNRERIGVIGICGWGGMALNAVAVDKR--VKAVVTSTMY 204
>3pfb_A Cinnamoyl esterase; alpha/beta hydrolase fold, hydrolase,
cinnamoyl/Fe esterase, hydroxycinammates, extracellular;
HET: ZYC; 1.58A {Lactobacillus johnsonii} PDB: 3pf9_A*
3pfc_A* 3s2z_A* 3pf8_A 3qm1_A*
Length = 270
Score = 40.6 bits (95), Expect = 3e-05
Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 4/60 (6%)
Query: 56 EIADQIAVVKYLTERFQFIDKTKVGIWGWSYGGFATAMVLATDTQNVFKCGVSVAPVTNF 115
EI D A++ Y+ + + G + GG A +LA ++ K V +AP
Sbjct: 101 EIEDANAILNYVKTDPHV---RNIYLVGHAQGG-VVASMLAGLYPDLIKKVVLLAPAATL 156
>2b9v_A Alpha-amino acid ester hydrolase; catalytic triad,
alpha/beta-hydrolase; 2.00A {Acetobacter pasteurianus}
SCOP: b.18.1.13 c.69.1.21 PDB: 2b4k_A 1nx9_A* 1ryy_A
Length = 652
Score = 40.9 bits (95), Expect = 3e-05
Identities = 22/93 (23%), Positives = 31/93 (33%), Gaps = 7/93 (7%)
Query: 28 IVVHIDARGS-----AYRSKEQEHSVYRNLGRYEIADQIAVVKYLTERFQFIDKTKVGIW 82
I V D RG Y H E D V +L + +VG+
Sbjct: 104 IRVFQDIRGKYGSQGDYVMTRPPHGPLNPTKTDETTDAWDTVDWLVHNVPESNG-RVGMT 162
Query: 83 GWSYGGFATAMVLATDTQNVFKCGVSVAPVTNF 115
G SY GF T ++ D K +P+ +
Sbjct: 163 GSSYEGF-TVVMALLDPHPALKVAAPESPMVDG 194
>1mpx_A Alpha-amino acid ester hydrolase; alpha/beta hydrolase, jellyroll,
selenomethionine; 1.90A {Xanthomonas citri} SCOP:
b.18.1.13 c.69.1.21
Length = 615
Score = 40.5 bits (94), Expect = 3e-05
Identities = 21/93 (22%), Positives = 32/93 (34%), Gaps = 7/93 (7%)
Query: 28 IVVHIDARGS-----AYRSKEQEHSVYRNLGRYEIADQIAVVKYLTERFQFIDKTKVGIW 82
I V D RG Y D + +L + + KVG+
Sbjct: 91 IRVFQDVRGKYGSEGDYVMTRPLRGPLNPSEVDHATDAWDTIDWLVKNVSESNG-KVGMI 149
Query: 83 GWSYGGFATAMVLATDTQNVFKCGVSVAPVTNF 115
G SY GF T ++ T+ K V +P+ +
Sbjct: 150 GSSYEGF-TVVMALTNPHPALKVAVPESPMIDG 181
>1ufo_A Hypothetical protein TT1662; alpha-beta fold, hydrolase, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; 1.60A {Thermus thermophilus} SCOP:
c.69.1.27
Length = 238
Score = 40.5 bits (94), Expect = 3e-05
Identities = 14/117 (11%), Positives = 32/117 (27%), Gaps = 10/117 (8%)
Query: 2 GGPGSNIISDRFSIDFHTYLVSKRHVIVVHIDARG---SAYRSKEQEHSVYRNLGRYEIA 58
G GS + ++R +++ DA + Y
Sbjct: 32 GLQGS---KEHIL--ALLPGYAERGFLLLAFDAPRHGEREGPPPSSKSPRYVEEVYRVAL 86
Query: 59 DQIAVVKYLTERFQFIDKTKVGIWGWSYGGFATAMVLATDTQNVFKCGVSVAPVTNF 115
+ + E + + + G S G F ++LA + + ++
Sbjct: 87 GFKEEARRVAEEAERRFGLPLFLAGGSLGAFVAHLLLAEGFR--PRGVLAFIGSGFP 141
>3vis_A Esterase; alpha/beta-hydrolase fold, polyethylene terephthal
hydrolase; HET: PE4; 1.76A {Thermobifida alba}
Length = 306
Score = 40.5 bits (94), Expect = 4e-05
Identities = 11/72 (15%), Positives = 23/72 (31%), Gaps = 7/72 (9%)
Query: 46 HSVYRNLGRYEIADQIAVVKYLTERFQ-----FIDKTKVGIWGWSYGGFATAMVLATDTQ 100
+ + A + Y+ ID +++ + G S GG T + +
Sbjct: 131 TNTTLDQPDSRARQLNAALDYMLTDASSAVRNRIDASRLAVMGHSMGGGGTLRLASQRPD 190
Query: 101 NVFKCGVSVAPV 112
K + + P
Sbjct: 191 --LKAAIPLTPW 200
>3fnb_A Acylaminoacyl peptidase SMU_737; alpha-beta-alpha sandwich, helix
bundle, structural genomics protein structure
initiative; HET: PGE; 2.12A {Streptococcus mutans}
Length = 405
Score = 39.7 bits (92), Expect = 6e-05
Identities = 18/93 (19%), Positives = 36/93 (38%), Gaps = 12/93 (12%)
Query: 24 KRHVIVVHIDARGSAYRSKEQEHSVYRNLGRYEIADQIAVVKYLTERFQFIDKTKVGIWG 83
+ V+ +D G + G + D A + + + +Q K+ I G
Sbjct: 185 EHDYNVLMVDLPGQGKNPNQ---------GLHFEVDARAAISAILDWYQ-APTEKIAIAG 234
Query: 84 WSYGGFATAMVLATDTQNVFKCGVSVAPVTNFL 116
+S GG+ TA + D + K ++ P+ +
Sbjct: 235 FSGGGYFTAQAVEKDKR--IKAWIASTPIYDVA 265
>3hlk_A Acyl-coenzyme A thioesterase 2, mitochondrial; alpha/beta
hydrolase, alternative splicing, hydrolase,
mitochondrion, polymorphism, serine esterase; 2.10A
{Homo sapiens}
Length = 446
Score = 39.4 bits (91), Expect = 8e-05
Identities = 12/66 (18%), Positives = 23/66 (34%), Gaps = 2/66 (3%)
Query: 50 RNLGRYEIADQIAVVKYLTERFQFIDKTKVGIWGWSYGGFATAMVLATDTQNVFKCGVSV 109
+ + + + YL + VG+ G S GG + +A+ + + V
Sbjct: 215 KTMETLHLEYFEEAMNYLLSH-PEVKGPGVGLLGISKGGEL-CLSMASFLKGITAAVVIN 272
Query: 110 APVTNF 115
V N
Sbjct: 273 GSVANV 278
>3iii_A COCE/NOND family hydrolase; structural genomics, center for
structural genomi infectious diseases, csgid; HET: MSE
PLM; 1.95A {Staphylococcus aureus subsp} PDB: 3ib3_A*
Length = 560
Score = 38.9 bits (90), Expect = 1e-04
Identities = 17/88 (19%), Positives = 31/88 (35%), Gaps = 8/88 (9%)
Query: 28 IVVHIDARGSAYRSKEQEHSVYRNLGRYEIADQIAVVKYLTERFQFIDKTKVGIWGWSYG 87
+VV + RGS +S V + E D V+++ + +G G SY
Sbjct: 119 VVVKVALRGS-DKS----KGVLSPWSKREAEDYYEVIEWAANQSWSNGN--IGTNGVSYL 171
Query: 88 GFATAMVLATDTQNVFKCGVSVAPVTNF 115
T +A+ K + + +
Sbjct: 172 AV-TQWWVASLNPPHLKAMIPWEGLNDM 198
>1jfr_A Lipase; serine hydrolase; 1.90A {Streptomyces exfoliatus} SCOP:
c.69.1.16
Length = 262
Score = 37.3 bits (86), Expect = 4e-04
Identities = 13/57 (22%), Positives = 25/57 (43%), Gaps = 5/57 (8%)
Query: 58 ADQIAVVKYLTERFQF---IDKTKVGIWGWSYGGFATAMVLATDTQNVFKCGVSVAP 111
++ + YLT+R +D T++G+ G S GG + + T K + +
Sbjct: 101 RQLLSALDYLTQRSSVRTRVDATRLGVMGHSMGGGGSLEAAKSRTS--LKAAIPLTG 155
>4ao6_A Esterase; hydrolase, thermo label; 1.60A {Unidentified} PDB: 4ao7_A
4ao8_A
Length = 259
Score = 36.4 bits (83), Expect = 8e-04
Identities = 22/111 (19%), Positives = 34/111 (30%), Gaps = 18/111 (16%)
Query: 3 GPGSNIISDRFSIDFHTYLVSKRHVIVVHIDARGSAYRSKEQEHSVYRNLGRYE------ 56
G G I+ L+ R + + ID G R+ Q ++ +
Sbjct: 62 GHGGTTHKKVEYIEQVAKLLVGRGISAMAIDGPGHGERASVQAGREPTDVVGLDAFPRMW 121
Query: 57 ---------IADQIAVVKYLTERFQFIDKTKVGIWGWSYGGFATAMVLATD 98
IAD A + ++ G WG S G V A+D
Sbjct: 122 HEGGGTAAVIADWAAALDFIEAE---EGPRPTGWWGLSMGTMMGLPVTASD 169
>3c8d_A Enterochelin esterase; alpha-beta-alpha sandwich, IROD, iron
aquisition, structural genomics, PSI-2, protein
structure initiative; HET: CIT; 1.80A {Shigella flexneri
2a str} SCOP: b.1.18.20 c.69.1.2 PDB: 2b20_A 3c87_A*
3c8h_A 3mga_A*
Length = 403
Score = 34.2 bits (78), Expect = 0.005
Identities = 13/72 (18%), Positives = 26/72 (36%), Gaps = 6/72 (8%)
Query: 27 VIVVHIDARGSAYRSKEQEHSVYRNLGRYEIADQIAVVKYLTERFQFI-DKTKVGIWGWS 85
+ V IDA + +R+ E + +A Q ++ + F + + G S
Sbjct: 230 AVYVLIDAIDTTHRAHE-----LPCNADFWLAVQQELLPLVKVIAPFSDRADRTVVAGQS 284
Query: 86 YGGFATAMVLAT 97
+GG +
Sbjct: 285 FGGLSALYAGLH 296
>4ezi_A Uncharacterized protein; alpha-beta hydrolases fold, structural
genomics, joint cente structural genomics, JCSG; HET:
MSE; 1.15A {Legionella pneumophila subsp}
Length = 377
Score = 33.7 bits (76), Expect = 0.007
Identities = 15/74 (20%), Positives = 25/74 (33%)
Query: 28 IVVHIDARGSAYRSKEQEHSVYRNLGRYEIADQIAVVKYLTERFQFIDKTKVGIWGWSYG 87
+ V D G V D + K L R + K+ + G+S G
Sbjct: 112 MTVMPDYLGLGDNELTLHPYVQAETLASSSIDMLFAAKELANRLHYPISDKLYLAGYSEG 171
Query: 88 GFATAMVLATDTQN 101
GF+T ++ +
Sbjct: 172 GFSTIVMFEMLAKE 185
>2o2g_A Dienelactone hydrolase; YP_324580.1, structural genomics, JO center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: MSE; 1.92A {Anabaena variabilis}
Length = 223
Score = 33.3 bits (76), Expect = 0.009
Identities = 17/84 (20%), Positives = 26/84 (30%), Gaps = 2/84 (2%)
Query: 28 IVVHIDARGSAYRSKEQEHSVYRNLGRYEIADQIAVVKYLTERFQFIDKTKVGIWGWSYG 87
+ ID + R + + +LT KVG +G S G
Sbjct: 66 ATLLIDLLTQEEEEIDLRTRHLRFDIGLLASRLVGATDWLTHNPD-TQHLKVGYFGASTG 124
Query: 88 GFATAMVLATDTQNVFKCGVSVAP 111
G A+V A + + VS
Sbjct: 125 G-GAALVAAAERPETVQAVVSRGG 147
>1tht_A Thioesterase; 2.10A {Vibrio harveyi} SCOP: c.69.1.13
Length = 305
Score = 33.4 bits (76), Expect = 0.010
Identities = 8/61 (13%), Positives = 17/61 (27%), Gaps = 7/61 (11%)
Query: 55 YEIADQIAVVKYLTERFQFIDKTKVGIWGWSYGGFATAMVLATDTQNVFKCGVSVAPVTN 114
V +L + +G+ S A + +D + ++ V N
Sbjct: 88 TGKNSLCTVYHWLQTKGT----QNIGLIAASLSA-RVAYEVISDLE--LSFLITAVGVVN 140
Query: 115 F 115
Sbjct: 141 L 141
>3pic_A CIP2; alpha/beta hydrolase fold, glucuronoyl esterase, carbohydrat
esterase family 15 (CE-15), N-linked glycosylation,
secrete hydrolase; HET: NAG; 1.90A {Hypocrea jecorina}
Length = 375
Score = 33.3 bits (75), Expect = 0.011
Identities = 11/59 (18%), Positives = 18/59 (30%), Gaps = 3/59 (5%)
Query: 59 DQIAVVKYL-TERFQFIDKTKVGIWGWSYGGFATAMVLATDTQNVFKCGVSVAPVTNFL 116
V+ L ID TK+G+ G S G + A + + +
Sbjct: 166 GVSRVIDALELVPGARIDTTKIGVTGCSRNGKGAMVAGAFEKR--IVLTLPQESGAGGS 222
>3i2k_A Cocaine esterase; alpha/beta hydrolase, hydrolase; HET: DBC GOL;
1.51A {Rhodococcus SP} PDB: 3i2j_A* 3puh_A 3i2h_A*
3i2i_A* 3i2g_A* 3ida_A* 3i2f_A* 3pui_A 1ju3_A 1ju4_A
1l7q_A 1l7r_A
Length = 587
Score = 33.0 bits (75), Expect = 0.012
Identities = 7/38 (18%), Positives = 12/38 (31%), Gaps = 1/38 (2%)
Query: 78 KVGIWGWSYGGFATAMVLATDTQNVFKCGVSVAPVTNF 115
VG++G SY G + + K +
Sbjct: 110 NVGMFGVSYLGVTQWQAAVSGVGGL-KAIAPSMASADL 146
>1lns_A X-prolyl dipeptidyl aminopetidase; alpha beta hydrolase fold; 2.20A
{Lactococcus lactis} SCOP: a.40.2.1 b.18.1.13 c.69.1.21
Length = 763
Score = 32.0 bits (72), Expect = 0.031
Identities = 19/119 (15%), Positives = 42/119 (35%), Gaps = 20/119 (16%)
Query: 10 SDRFSIDFHTYLVSKRHVIVVHIDARGSAYRSKEQEHSVYRNLGRYEIADQIAVVKYLTE 69
+ ++ + Y + R +++ G+ S + +I AV+ +L
Sbjct: 266 THGWTYSLNDYFL-TRGFASIYVAGVGT-RSSDG----FQTSGDYQQIYSMTAVIDWLNG 319
Query: 70 R-FQFIDKT------------KVGIWGWSYGGFATAMVLATDTQNVFKCGVSVAPVTNF 115
R + + KV + G SY G A AT + ++ A ++++
Sbjct: 320 RARAYTSRKKTHEIKASWANGKVAMTGKSYLGT-MAYGAATTGVEGLELILAEAGISSW 377
>3n2z_B Lysosomal Pro-X carboxypeptidase; alpha/beta hydrolase, PRCP,
serine carboxypeptidase, hydrola; HET: NAG; 2.79A {Homo
sapiens}
Length = 446
Score = 31.4 bits (70), Expect = 0.045
Identities = 15/60 (25%), Positives = 22/60 (36%)
Query: 57 IADQIAVVKYLTERFQFIDKTKVGIWGWSYGGFATAMVLATDTQNVFKCGVSVAPVTNFL 116
+AD ++K+L + V G SYGG A V + AP+ F
Sbjct: 106 LADFAELIKHLKRTIPGAENQPVIAIGGSYGGMLAAWFRMKYPHMVVGALAASAPIWQFE 165
>2d81_A PHB depolymerase; alpha/beta hydrolase fold, circular permutation,
hydrolase; HET: NAG RB3; 1.66A {Penicillium funiculosum}
SCOP: c.69.1.37 PDB: 2d80_A*
Length = 318
Score = 31.4 bits (70), Expect = 0.045
Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 74 IDKTKVGIWGWSYGGFATAMVLATDTQNVFKCGVSV 109
++ V + G + GG+ A L +VF G V
Sbjct: 8 VNPNSVSVSGLASGGYMAA-QLGVAYSDVFNVGFGV 42
>3bxp_A Putative lipase/esterase; putative carboxylesterase, structural
genomics, joint center structural genomics, JCSG; HET:
EPE; 1.70A {Lactobacillus plantarum WCFS1} PDB: 3d3n_A*
Length = 277
Score = 31.0 bits (70), Expect = 0.063
Identities = 22/114 (19%), Positives = 42/114 (36%), Gaps = 15/114 (13%)
Query: 2 GGPGSNIISDRFSIDFHTYLVSKR-HVIVVHIDARGSAYRSKEQEHSVYRNLGRYEIADQ 60
GG G S R T +++ H +V++ Y+ + SVY +
Sbjct: 43 GG-GFTYHSGREEAPIATRMMAAGMHTVVLN-------YQLIVGDQSVYPW----ALQQL 90
Query: 61 IAVVKYLTERFQ--FIDKTKVGIWGWSYGGFATAMVLATDTQNVFKCGVSVAPV 112
A + ++T + +D ++ + G+S GG A TQ + +
Sbjct: 91 GATIDWITTQASAHHVDCQRIILAGFSAGGHVVATYNGVATQPELRTRYHLDHY 144
>2fx5_A Lipase; alpha-beta hydrolase; HET: TLA; 1.80A {Pseudomonas
mendocina}
Length = 258
Score = 30.8 bits (69), Expect = 0.071
Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Query: 74 IDKTKVGIWGWSYGGFATAMVLATDTQNVFKCGVSVAPVT 113
++ +VG G S GG +++ DT+ + + P T
Sbjct: 115 LNTGRVGTSGHSQGG-GGSIMAGQDTR--VRTTAPIQPYT 151
>3bjr_A Putative carboxylesterase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; 2.09A {Lactobacillus plantarum WCFS1}
Length = 283
Score = 30.6 bits (69), Expect = 0.072
Identities = 8/43 (18%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 61 IAVVKYLTERFQFIDKTKVGIWGWSYGGFATAMVLATDTQNVF 103
+ +++ + ID ++ G+S GG A+ V
Sbjct: 109 VNLLRQHAAEWH-IDPQQITPAGFSVGGHIVALYNDYWATRVA 150
>3hxk_A Sugar hydrolase; alpha-beta protein., structural genomics, PSI-2,
protein structure initiative; 3.20A {Lactococcus lactis
subsp}
Length = 276
Score = 30.5 bits (69), Expect = 0.085
Identities = 12/44 (27%), Positives = 21/44 (47%)
Query: 74 IDKTKVGIWGWSYGGFATAMVLATDTQNVFKCGVSVAPVTNFLY 117
I+ +V + G S GG A ++ + K + PVT+F +
Sbjct: 116 INPEQVFLLGCSAGGHLAAWYGNSEQIHRPKGVILCYPVTSFTF 159
>3f67_A Putative dienelactone hydrolase; alpha-beta-alpha sandwich,
structural genomics, PSI-2, prote structure initiative;
1.74A {Klebsiella pneumoniae subsp}
Length = 241
Score = 28.8 bits (65), Expect = 0.28
Identities = 11/52 (21%), Positives = 20/52 (38%), Gaps = 4/52 (7%)
Query: 57 IADQIAVVKYLTERFQFIDKTKVGIWGWSYGGFATAMVLATDTQNVFKCGVS 108
+AD V + D ++ I G+ +GG + A + K V+
Sbjct: 97 LADLDHVASWAARHGG--DAHRLLITGFCWGG-RITWLYAAHNPQL-KAAVA 144
>3h2g_A Esterase; xanthomonas oryzae PV. oryzae, cell WALL degrading
enzyme, RICE, virulence, innate immune responses,
pathogenesis; 1.86A {Xanthomonas oryzae PV} PDB: 3h2j_A
3h2k_A* 3h2h_A 3h2i_A
Length = 397
Score = 29.1 bits (64), Expect = 0.29
Identities = 11/69 (15%), Positives = 22/69 (31%)
Query: 28 IVVHIDARGSAYRSKEQEHSVYRNLGRYEIADQIAVVKYLTERFQFIDKTKVGIWGWSYG 87
+VV D G + ++ D + + + + + KV + G+S G
Sbjct: 119 VVVGSDYLGLGKSNYAYHPYLHSASEASATIDAMRAARSVLQHLKTPLSGKVMLSGYSQG 178
Query: 88 GFATAMVLA 96
G
Sbjct: 179 GHTAMATQR 187
>1zi8_A Carboxymethylenebutenolidase; alpha and beta proteins, 3-D
structure, serine esterase, HYD aromatic hydrocarbons,
catabolism; 1.40A {Pseudomonas putida} PDB: 1zj5_A*
1zi9_A 1zi6_A 1zj4_A* 1din_A 1ziy_A* 1zic_A 1zix_A
1ggv_A*
Length = 236
Score = 28.8 bits (65), Expect = 0.30
Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 5/52 (9%)
Query: 57 IADQIAVVKYLTERFQFIDKTKVGIWGWSYGGFATAMVLATDTQNVFKCGVS 108
+ D A ++Y + KVG+ G+S GG A A ++A+ V
Sbjct: 97 VGDLEAAIRYARHQPY--SNGKVGLVGYSLGG-ALAFLVASKGY--VDRAVG 143
>2i3d_A AGR_C_3351P, hypothetical protein ATU1826; structural genomics,
APC5865, hydrolase, PSI-2, protein STRU initiative; HET:
MSE; 1.50A {Agrobacterium tumefaciens str} SCOP:
c.69.1.36
Length = 249
Score = 28.7 bits (63), Expect = 0.40
Identities = 14/94 (14%), Positives = 34/94 (36%), Gaps = 10/94 (10%)
Query: 1 YGGPGSNIISDRFSIDFHTYLVSKRHVIVVHIDARGSAYRSKEQEHSVYRNLGRYEIADQ 60
+ G + + F+ + KR + + R E +H G E++D
Sbjct: 56 HPQFGGTMNNQIVYQLFYLF--QKRGFTTLRFNFRSIGRSQGEFDH------GAGELSDA 107
Query: 61 IAVVKYLTERFQFIDKTKVGIWGWSYGGFATAMV 94
+ + ++ + D + G+S+G + +
Sbjct: 108 ASALDWV--QSLHPDSKSCWVAGYSFGAWIGMQL 139
>3h04_A Uncharacterized protein; protein with unknown function, structural
genomics, MCSG, PS protein structure initiative; 1.90A
{Staphylococcus aureus subsp}
Length = 275
Score = 27.5 bits (61), Expect = 1.0
Identities = 6/38 (15%), Positives = 15/38 (39%), Gaps = 3/38 (7%)
Query: 57 IADQIAVVKYLTERFQFIDKTKVGIWGWSYGGFATAMV 94
I D A + ++ + +G S G + + ++
Sbjct: 79 IEDVYASFDAIQSQY---SNCPIFTFGRSSGAYLSLLI 113
>3d59_A Platelet-activating factor acetylhydrolase; secreted protein,
alpha/beta-hydrolase-fold, LDL-bound, lipoprotein
associated phospholipase A2, LP-PLA2; 1.50A {Homo
sapiens} PDB: 3d5e_A 3f97_A* 3f98_A 3f9c_A* 3f96_A*
Length = 383
Score = 27.2 bits (59), Expect = 1.4
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 74 IDKTKVGIWGWSYGGFATAMVLATDTQNVFKC 105
ID+ K+ + G S+GG L+ D +
Sbjct: 216 IDREKIAVIGHSFGGATVIQTLSEDQRFRCGI 247
>2rau_A Putative esterase; NP_343859.1, putative lipase, structural
genomics, joint CEN structural genomics, JCSG; HET: PG4
UNL; 1.85A {Sulfolobus solfataricus P2}
Length = 354
Score = 26.9 bits (58), Expect = 1.6
Identities = 16/92 (17%), Positives = 31/92 (33%), Gaps = 6/92 (6%)
Query: 23 SKRHVIVVHIDARG---SAYRSKEQEHSVYRNLGRYEIADQIAVVKYLTERFQFIDKTKV 79
++ V ID R + Q I+D VV ++ + ++
Sbjct: 90 ARNGFNVYTIDYRTHYVPPFLKDRQLSFTANWGWSTWISDIKEVVSFIKRDSG---QERI 146
Query: 80 GIWGWSYGGFATAMVLATDTQNVFKCGVSVAP 111
+ G S+GG A + +N K + +
Sbjct: 147 YLAGESFGGIAALNYSSLYWKNDIKGLILLDG 178
>1jjf_A Xylanase Z, endo-1,4-beta-xylanase Z, 1,4-beta-D-xylan; feruloyl
esterase, ferulic acid esterase, FAE_XYNZ, XYNZ,
structural genomics; 1.75A {Clostridium thermocellum}
SCOP: c.69.1.2 PDB: 1jt2_A*
Length = 268
Score = 27.1 bits (60), Expect = 1.6
Identities = 13/90 (14%), Positives = 30/90 (33%), Gaps = 9/90 (10%)
Query: 27 VIVVHIDARGSAYRSKEQEHSVYRNLGRYEIADQIAVVKYLTERFQFI-DKTKVGIWGWS 85
+I+V + + + Y N + + ++ Y+ + D+ I G S
Sbjct: 101 LIIVTPNTNAAGPGIADG----YENFTKDLLNS---LIPYIESNYSVYTDREHRAIAGLS 153
Query: 86 YGGFATAMVLATDTQNVFKCGVSVAPVTNF 115
GG + + + F ++ N
Sbjct: 154 MGGGQ-SFNIGLTNLDKFAYIGPISAAPNT 182
>2qmq_A Protein NDRG2, protein NDR2; alpha/beta-hydrolases fold, NDR
family, developmental protei differentiation,
neurogenesis, phosphorylation; HET: 2PE; 1.70A {Mus
musculus} PDB: 2xmq_A 2xmr_A 2xms_A
Length = 286
Score = 26.6 bits (58), Expect = 1.8
Identities = 19/98 (19%), Positives = 34/98 (34%), Gaps = 11/98 (11%)
Query: 1 YGGPGSNIIS-DRFSIDFHTYLVSKRHVIVVHIDARGSA-YRSKEQEHSVYRNLGRYEIA 58
Y G N S + F ++ + VH+DA G Y +L ++A
Sbjct: 41 YHDVGLNYKSCFQPLFRFGDMQEIIQNFVRVHVDAPGMEEGAPVFPLGYQYPSLD--QLA 98
Query: 59 DQIAVVKYLTERFQFIDKTKVGIWGWSYGGFATAMVLA 96
D I + Q+++ + + G G + A
Sbjct: 99 DMIPCI------LQYLNFSTIIGVGVGAGAY-ILSRYA 129
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain
cytoplasmic; motor protein, AAA+ protein, ASCE protein,
P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma
japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Length = 2695
Score = 26.7 bits (59), Expect = 1.9
Identities = 7/32 (21%), Positives = 13/32 (40%), Gaps = 10/32 (31%)
Query: 2 GGPGSNIISDRFSIDFHTYLVSKRHVIVVHID 33
PG +S+RF RH ++++
Sbjct: 1395 TDPGRIPMSERF----------TRHAAILYLG 1416
>2qru_A Uncharacterized protein; alpha/beta-hydrolase, structural GENO
PSI-2, protein structure initiative, midwest center for
STR genomics, MCSG; 1.65A {Enterococcus faecalis}
Length = 274
Score = 26.3 bits (58), Expect = 2.5
Identities = 10/61 (16%), Positives = 19/61 (31%), Gaps = 4/61 (6%)
Query: 57 IADQIAVVKYLTERFQFIDKTKVGIWGWSYGGFATAMV--LATDTQNVFKCGVSVAPVTN 114
+ + L E + I G+ G S GG+ + + V+ T+
Sbjct: 78 LRTLTETFQLLNE--EIIQNQSFGLCGRSAGGYLMLQLTKQLQTLNLTPQFLVNFYGYTD 135
Query: 115 F 115
Sbjct: 136 L 136
>2pbl_A Putative esterase/lipase/thioesterase; alpha/beta-hydrolases fold,
structural genomics, joint cente structural genomics,
JCSG; 1.79A {Silicibacter SP} SCOP: c.69.1.2
Length = 262
Score = 26.0 bits (57), Expect = 3.1
Identities = 8/53 (15%), Positives = 15/53 (28%)
Query: 49 YRNLGRYEIADQIAVVKYLTERFQFIDKTKVGIWGWSYGGFATAMVLATDTQN 101
Y I++ + + + G S GG A +L +
Sbjct: 101 YELCPEVRISEITQQISQAVTAAAKEIDGPIVLAGHSAGGHLVARMLDPEVLP 153
>3oba_A Beta-galactosidase; TIM barrel, tetramer, GH2, glycosidase,
hydrolase; 2.75A {Kluyveromyces lactis} PDB: 3ob8_A
Length = 1032
Score = 26.0 bits (57), Expect = 4.2
Identities = 3/18 (16%), Positives = 6/18 (33%)
Query: 18 HTYLVSKRHVIVVHIDAR 35
H V + + +D
Sbjct: 982 HACDVKRYGRHYLRLDHA 999
>1nc5_A Hypothetical protein YTER; structural genomics, helix barrel,
PSI, protein structure initiative, midwest center for
structural genomics, MCSG; 1.60A {Bacillus subtilis}
SCOP: a.102.1.6 PDB: 2d8l_A* 2gh4_A*
Length = 373
Score = 25.8 bits (56), Expect = 4.3
Identities = 4/36 (11%), Positives = 11/36 (30%)
Query: 61 IAVVKYLTERFQFIDKTKVGIWGWSYGGFATAMVLA 96
A+ + + + W + G F ++
Sbjct: 18 EALANTIMNTYTVEELPPANRWHYHQGVFLCGVLRL 53
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo
sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Length = 341
Score = 25.3 bits (55), Expect = 5.7
Identities = 5/28 (17%), Positives = 14/28 (50%)
Query: 48 VYRNLGRYEIADQIAVVKYLTERFQFID 75
++ N+ R +I + V+Y+ + +
Sbjct: 101 IFNNILRRQIGTRTPTVEYICTQQNILF 128
>3bga_A Beta-galactosidase; NYSGXRC, protein structure initiative II
(PSI-II), glycosyl hydrolase family 2, jelly-roll fold;
2.10A {Bacteroides thetaiotaomicron vpi-5482} PDB:
3dec_A
Length = 1010
Score = 25.6 bits (56), Expect = 6.0
Identities = 5/18 (27%), Positives = 10/18 (55%)
Query: 18 HTYLVSKRHVIVVHIDAR 35
H + + +I +H+DA
Sbjct: 951 HINELERDGMITIHLDAE 968
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 25.4 bits (55), Expect = 6.5
Identities = 11/45 (24%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 5 GSNI--ISDRFSIDFHTYLVSKRHVIVVHIDARGSAYRSKEQEHS 47
G++I ++ + + T LV + +I +I AR A R +++ +
Sbjct: 98 GNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSN 142
>3fan_A Non-structural protein; chymotrypsin-like, N-terminal beta-barrels,
C-terminal alpha-beta extra domain; 1.90A {Porcine
respiratory and reproductivesyndrome virus} PDB: 3fao_A
Length = 213
Score = 25.1 bits (54), Expect = 6.5
Identities = 22/103 (21%), Positives = 36/103 (34%), Gaps = 5/103 (4%)
Query: 13 FSIDFHTYLVSKRHVIVVHIDARGSAYRSKEQEHSVYRNLGRYEIADQIAVVKYLTERFQ 72
F+ID V+ H V+ ++ + Q + G + IAD + + + Q
Sbjct: 35 FTIDGKIKCVTAAH--VLTGNSARVSGVGFNQMLD-FDVKGDFAIAD-CPNWQGVAPKAQ 90
Query: 73 FIDKTKVGIWGWSYGGFATAMVLATDTQNVF-KCGVSVAPVTN 114
F + G W V+ F CG S +PV
Sbjct: 91 FCEDGWTGRAYWLTSSGVEPGVIGNGFAFCFTACGDSGSPVIT 133
>1jz7_A Lactase, beta-galactosidase, LACZ; TIM barrel (alpha/beta barrel),
jelly-roll barrel, immunoglobulin, beta supersandwich,
hydrolase; HET: GAL; 1.50A {Escherichia coli} SCOP:
b.1.4.1 b.1.4.1 b.18.1.5 b.30.5.1 c.1.8.3 PDB: 1hn1_A
1jyx_A* 1jz3_A* 1jz4_A* 1jz5_A* 1jz6_A* 1dp0_A* 3iap_A*
1jz8_A* 1jyn_A* 1jyv_A* 1jyw_A* 3iaq_A* 1px3_A 1px4_A*
3czj_A* 3i3e_A 3i3d_A* 3i3b_A 3dym_A ...
Length = 1023
Score = 25.2 bits (55), Expect = 6.6
Identities = 4/18 (22%), Positives = 8/18 (44%)
Query: 18 HTYLVSKRHVIVVHIDAR 35
H +L+ ++ID
Sbjct: 972 HRHLLHAEEGTWLNIDGF 989
>1yq2_A Beta-galactosidase; glycosyl hydrolase family 2, TIM barrel,
hexamer; 1.90A {Arthrobacter SP} SCOP: b.1.4.1 b.1.4.1
b.18.1.5 b.30.5.1 c.1.8.3
Length = 1024
Score = 25.2 bits (55), Expect = 7.3
Identities = 3/18 (16%), Positives = 8/18 (44%)
Query: 18 HTYLVSKRHVIVVHIDAR 35
H + + +++DA
Sbjct: 974 HPHELPTPSHSYLYVDAA 991
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 25.2 bits (55), Expect = 7.5
Identities = 6/32 (18%), Positives = 11/32 (34%), Gaps = 10/32 (31%)
Query: 2 GGPGSNIISDRFSIDFHTYLVSKRHVIVVHID 33
G ++ RF RH ++ +D
Sbjct: 1433 TDAGRVQLTHRF----------LRHAPILLVD 1454
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.138 0.423
Gapped
Lambda K H
0.267 0.0459 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,801,498
Number of extensions: 95426
Number of successful extensions: 353
Number of sequences better than 10.0: 1
Number of HSP's gapped: 331
Number of HSP's successfully gapped: 71
Length of query: 117
Length of database: 6,701,793
Length adjustment: 80
Effective length of query: 37
Effective length of database: 4,468,113
Effective search space: 165320181
Effective search space used: 165320181
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.1 bits)