RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14549
(117 letters)
>d2b9va2 c.69.1.21 (A:50-434) Alpha-amino acid ester hydrolase
{Acetobacter pasteurianus [TaxId: 438]}
Length = 385
Score = 52.4 bits (124), Expect = 7e-10
Identities = 24/120 (20%), Positives = 37/120 (30%), Gaps = 7/120 (5%)
Query: 1 YGGPGSNIISDRFSIDFHTYLVSKRHVIVVHIDARGS-----AYRSKEQEHSVYRNLGRY 55
N ++ R + + + I V D RG Y H
Sbjct: 68 RANRVPNALTMREVLPQGDDVFVEGGYIRVFQDIRGKYGSQGDYVMTRPPHGPLNPTKTD 127
Query: 56 EIADQIAVVKYLTERFQFIDKTKVGIWGWSYGGFATAMVLATDTQNVFKCGVSVAPVTNF 115
E D V +L +VG+ G SY GF T ++ D K +P+ +
Sbjct: 128 ETTDAWDTVDWLVHN-VPESNGRVGMTGSSYEGF-TVVMALLDPHPALKVAAPESPMVDG 185
>d1lnsa3 c.69.1.21 (A:146-550) X-Prolyl dipeptidyl aminopeptidase
PepX, middle domain {Lactococcus lactis [TaxId: 1358]}
Length = 405
Score = 51.5 bits (122), Expect = 2e-09
Identities = 16/127 (12%), Positives = 38/127 (29%), Gaps = 20/127 (15%)
Query: 2 GGPGSNIISDRFSIDFHTYLVSKRHVIVVHIDARGSAYRSKEQEHSVYRNLGRYEIADQI 61
+ ++ + Y ++ R +++ G+ + +I
Sbjct: 113 VDKAPYRFTHGWTYSLNDYFLT-RGFASIYVAGVGTRSSDGF-----QTSGDYQQIYSMT 166
Query: 62 AVVKYLTER-------------FQFIDKTKVGIWGWSYGGFATAMVLATDTQNVFKCGVS 108
AV+ +L R KV + G SY G T + ++
Sbjct: 167 AVIDWLNGRARAYTSRKKTHEIKASWANGKVAMTGKSYLGTMAYGAATTG-VEGLELILA 225
Query: 109 VAPVTNF 115
A ++++
Sbjct: 226 EAGISSW 232
>d1xfda2 c.69.1.24 (A:592-849) Dipeptidyl aminopeptidase-like
protein 6, DPP6, C-terminal domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 258
Score = 50.1 bits (118), Expect = 4e-09
Identities = 33/120 (27%), Positives = 58/120 (48%), Gaps = 4/120 (3%)
Query: 1 YGGPGSNIISDRFSIDFHTYLVSKRHVIVVHIDARGSAYRSKEQEHSVYRNLGRYEIADQ 60
G PGS ++++F + + T +VS +VV D RGS ++ + H V R
Sbjct: 38 DGTPGSQSVAEKFEVSWETVMVSSHGAVVVKCDGRGSGFQGTKLLHEVRRR-LGLLEEKD 96
Query: 61 IAVVKYLTERFQFIDKTKVGIWGWSYGGFATAMVLATD---TQNVFKCGVSVAPVTNFLY 117
+ Q+ID+T+V ++G YGG+ + +L F CG +++P+T+F
Sbjct: 97 QMEAVRTMLKEQYIDRTRVAVFGKDYGGYLSTYILPAKGENQGQTFTCGSALSPITDFKL 156
>d1mpxa2 c.69.1.21 (A:24-404) Alpha-amino acid ester hydrolase
{Xanthomonas citri [TaxId: 346]}
Length = 381
Score = 45.9 bits (107), Expect = 1e-07
Identities = 23/125 (18%), Positives = 35/125 (28%), Gaps = 11/125 (8%)
Query: 1 YGGPGSNIISDRFSIDF---HTYLVSKRHVIVVHIDARGSAYRSKEQEH-----SVYRNL 52
G + S V I V D RG +
Sbjct: 61 ASGRTERLASPHMKDLLSAGDDVFVE-GGYIRVFQDVRGKYGSEGDYVMTRPLRGPLNPS 119
Query: 53 GRYEIADQIAVVKYLTERFQFIDKTKVGIWGWSYGGFATAMVLATDTQNVFKCGVSVAPV 112
D + +L + KVG+ G SY GF T ++ T+ K V +P+
Sbjct: 120 EVDHATDAWDTIDWLVKN-VSESNGKVGMIGSSYEGF-TVVMALTNPHPALKVAVPESPM 177
Query: 113 TNFLY 117
+
Sbjct: 178 IDGWM 182
>d2d81a1 c.69.1.37 (A:21-338) Polyhydroxybutyrate depolymerase
{Penicillium funiculosum [TaxId: 28572]}
Length = 318
Score = 45.8 bits (108), Expect = 2e-07
Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 74 IDKTKVGIWGWSYGGFATAMVLATDTQNVFKCGVSV 109
++ V + G + GG+ A L +VF G V
Sbjct: 8 VNPNSVSVSGLASGGYMAAQ-LGVAYSDVFNVGFGV 42
>d2bgra2 c.69.1.24 (A:509-766) Dipeptidyl peptidase IV/CD26,
C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}
Length = 258
Score = 41.3 bits (95), Expect = 6e-06
Identities = 35/115 (30%), Positives = 57/115 (49%), Gaps = 2/115 (1%)
Query: 1 YGGPGSNIISDRFSIDFHTYLVSKRHVIVVHIDARGSAYRSKEQEHSVYRNLGRYEIADQ 60
Y GP S F +++ TYL S ++IV D RGS Y+ + H++ R LG +E+ DQ
Sbjct: 39 YAGPCSQKADTVFRLNWATYLASTENIIVASFDGRGSGYQGDKIMHAINRRLGTFEVEDQ 98
Query: 61 IAVVKYLTERFQFIDKTKVGIWGWSYGGFATAMVLATDTQNVFKCGVSVAPVTNF 115
I + ++ +K G + ++ VFKCG++VAPV+ +
Sbjct: 99 IEAARQFSKMGFVDNKRIAIWGWSYGGYVTSMVL--GSGSGVFKCGIAVAPVSRW 151
>d1sfra_ c.69.1.3 (A:) Antigen 85a {Mycobacterium tuberculosis
[TaxId: 1773]}
Length = 288
Score = 38.0 bits (87), Expect = 8e-05
Identities = 15/118 (12%), Positives = 35/118 (29%), Gaps = 5/118 (4%)
Query: 1 YGGPGSNIISDRFSIDFHTYLVSKRHVIVVHIDARGSAYRSKEQEHSVYRNLG---RYEI 57
G + S + + VV S++ S + + + ++E
Sbjct: 41 DGLRAQDDFSGWDINTPAFEWYDQSGLSVVMPVGGQSSFYSDWYQPACGKAGCQTYKWET 100
Query: 58 ADQIAVVKYLTERFQFIDKTKVGIWGWSYGGFATAMVLATDTQNVFKCGVSVAPVTNF 115
+ +L T + G S + A+ LA F +++ + +
Sbjct: 101 FLTSELPGWLQANRHV-KPTGSAVVGLSMAASS-ALTLAIYHPQQFVYAGAMSGLLDP 156
>d1dqza_ c.69.1.3 (A:) Antigen 85c {Mycobacterium tuberculosis
[TaxId: 1773]}
Length = 280
Score = 36.0 bits (82), Expect = 4e-04
Identities = 14/97 (14%), Positives = 33/97 (34%), Gaps = 5/97 (5%)
Query: 21 LVSKRHVIVVHIDARGSAYRSKEQEHSVYRNLGRYEIADQIAVVKYL---TERFQFIDKT 77
+ + V+ S++ + + S Y + + + + + + + T
Sbjct: 56 EYYQSGLSVIMPVGGQSSFYTDWYQPSQSNG-QNYTYKWETFLTREMPAWLQANKGVSPT 114
Query: 78 KVGIWGWSYGGFATAMVLATDTQNVFKCGVSVAPVTN 114
G S G + A++LA F S++ N
Sbjct: 115 GNAAVGLSMSGGS-ALILAAYYPQQFPYAASLSGFLN 150
>d1r88a_ c.69.1.3 (A:) Antigen pt51/mpb51 {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 267
Score = 34.1 bits (77), Expect = 0.002
Identities = 12/92 (13%), Positives = 28/92 (30%), Gaps = 6/92 (6%)
Query: 24 KRHVIVVHIDARGSAYRSKEQEHSVYRNLGRYEIADQIAVVKYLTERFQFIDKTKVGIWG 83
+ + VV + + ++ + ++ + +L G
Sbjct: 57 GKGISVVAPAGGAYSMYTNWEQDGSKQ----WDTFLSAELPDWLAANRGL-APGGHAAVG 111
Query: 84 WSYGGFATAMVLATDTQNVFKCGVSVAPVTNF 115
+ GG+ AM LA + F S++
Sbjct: 112 AAQGGYG-AMALAAFHPDRFGFAGSMSGFLYP 142
>d1wb4a1 c.69.1.2 (A:803-1075) Feruloyl esterase domain of the
cellulosomal xylanase y {Clostridium thermocellum
[TaxId: 1515]}
Length = 273
Score = 31.7 bits (70), Expect = 0.012
Identities = 12/104 (11%), Positives = 33/104 (31%), Gaps = 1/104 (0%)
Query: 12 RFSIDFHTYLVSKRHVIVVHIDARGSAYRSKEQEHSVYRNLGRYEIADQIAVVKYLTERF 71
+ +D +IVV G ++ +N+ + + + T +
Sbjct: 79 QNILDHAIMNGELEPLIVVTPTFNGGNCTAQNFYQEFRQNVIPFVESKYSTYAESTTPQG 138
Query: 72 QFIDKTKVGIWGWSYGGFATAMVLATDTQNVFKCGVSVAPVTNF 115
+ G G++ GG T + + + + ++ +
Sbjct: 139 IAASRMHRGFGGFAMGGLTT-WYVMVNCLDYVAYFMPLSGDYWY 181
>d1ufoa_ c.69.1.27 (A:) Hypothetical protein TT1662 {Thermus
thermophilus [TaxId: 274]}
Length = 238
Score = 29.4 bits (64), Expect = 0.082
Identities = 11/81 (13%), Positives = 25/81 (30%), Gaps = 3/81 (3%)
Query: 23 SKRHVIVVHIDARG---SAYRSKEQEHSVYRNLGRYEIADQIAVVKYLTERFQFIDKTKV 79
++R +++ DA + Y + + E + +
Sbjct: 48 AERGFLLLAFDAPRHGEREGPPPSSKSPRYVEEVYRVALGFKEEARRVAEEAERRFGLPL 107
Query: 80 GIWGWSYGGFATAMVLATDTQ 100
+ G S G F ++LA +
Sbjct: 108 FLAGGSLGAFVAHLLLAEGFR 128
>d1thta_ c.69.1.13 (A:) Myristoyl-ACP-specific thioesterase {Vibrio
harveyi [TaxId: 669]}
Length = 302
Score = 29.1 bits (64), Expect = 0.12
Identities = 11/94 (11%), Positives = 25/94 (26%), Gaps = 7/94 (7%)
Query: 23 SKRHVIVVHIDARGSAYRSKEQEHSVYRNLGRYEIADQIAVVKYLTERFQFIDKTKVGIW 82
S V D+ S ++ + + + + Q +G+
Sbjct: 56 STNGFHVFRYDSLHHVGLS-------SGSIDEFTMTTGKNSLCTVYHWLQTKGTQNIGLI 108
Query: 83 GWSYGGFATAMVLATDTQNVFKCGVSVAPVTNFL 116
S V++ + V V + + L
Sbjct: 109 AASLSARVAYEVISDLELSFLITAVGVVNLRDTL 142
>d1jmkc_ c.69.1.22 (C:) Surfactin synthetase, SrfA {Bacillus
subtilis [TaxId: 1423]}
Length = 230
Score = 27.0 bits (58), Expect = 0.62
Identities = 8/69 (11%), Positives = 24/69 (34%), Gaps = 3/69 (4%)
Query: 23 SKRHVIVVHIDARGSA--YRSKEQEHSVYRNLGRYEIADQIAVVKYLTERFQFIDKTKVG 80
++ + G Y++ Y+ I ++ + +Y + + +
Sbjct: 16 QEQIIFAFP-PVLGYGLMYQNLSSRLPSYKLCAFDFIEEEDRLDRYADLIQKLQPEGPLT 74
Query: 81 IWGWSYGGF 89
++G+S G
Sbjct: 75 LFGYSAGCS 83
>d1tcaa_ c.69.1.17 (A:) Triacylglycerol lipase {Yeast (Candida
antarctica), form b [TaxId: 34362]}
Length = 317
Score = 26.2 bits (57), Expect = 1.2
Identities = 12/104 (11%), Positives = 31/104 (29%), Gaps = 15/104 (14%)
Query: 23 SKRHVIVVH--IDARGSAYRSKEQEH-------SVYRNLGRYEIADQIAVVKYLTERFQF 73
+ +++V ++ S + + + + D +Y+
Sbjct: 30 VSKPILLVPGTGTTGPQSFDSNWIPLSTQLGYTPCWISPPPFMLNDTQVNTEYMVNAITA 89
Query: 74 IDK----TKVGIWGWSYGGFATAMVLAT--DTQNVFKCGVSVAP 111
+ K+ + WS GG L ++ ++ AP
Sbjct: 90 LYAGSGNNKLPVLTWSQGGLVAQWGLTFFPSIRSKVDRLMAFAP 133
>d1jz8a4 b.30.5.1 (A:731-1023) beta-Galactosidase, domain 5
{Escherichia coli [TaxId: 562]}
Length = 293
Score = 24.7 bits (53), Expect = 3.0
Identities = 4/18 (22%), Positives = 8/18 (44%)
Query: 18 HTYLVSKRHVIVVHIDAR 35
H +L+ ++ID
Sbjct: 242 HRHLLHAEEGTWLNIDGF 259
>d1yq2a4 b.30.5.1 (A:722-1023) beta-Galactosidase, domain 5
{Arthrobacter sp. c2-2 [TaxId: 192168]}
Length = 302
Score = 24.6 bits (53), Expect = 3.8
Identities = 3/18 (16%), Positives = 8/18 (44%)
Query: 18 HTYLVSKRHVIVVHIDAR 35
H + + +++DA
Sbjct: 252 HPHELPTPSHSYLYVDAA 269
>d1j26a_ d.50.4.1 (A:) Ict1 protein {Mouse (Mus musculus) [TaxId:
10090]}
Length = 112
Score = 23.4 bits (50), Expect = 7.0
Identities = 6/52 (11%), Positives = 15/52 (28%), Gaps = 1/52 (1%)
Query: 22 VSKRHVIV-VHIDARGSAYRSKEQEHSVYRNLGRYEIADQIAVVKYLTERFQ 72
V+K + V + + + + V+ + R+Q
Sbjct: 37 VNKVNSKAEVRFHLASADWIEEPVRQKIALTHKNKINKAGELVLTSESSRYQ 88
>d1w6ga3 d.17.2.1 (A:97-211) Copper amine oxidase, domains 1 and 2
{Arthrobacter globiformis [TaxId: 1665]}
Length = 115
Score = 23.2 bits (50), Expect = 7.0
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 74 IDKTKVGIWGWSYGGF 89
+D +KV + S G F
Sbjct: 31 LDVSKVRVAPLSAGVF 46
>d1mv8a3 c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase,
GDP-binding domain {Pseudomonas aeruginosa [TaxId:
287]}
Length = 136
Score = 23.6 bits (50), Expect = 7.2
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 64 VKYLTERFQFIDKTKVGIWGWSY 86
V+ + D KVG+ G S+
Sbjct: 1 VQKAFDLITSHDTRKVGLLGLSF 23
>g1wht.1 c.69.1.5 (A:,B:) Serine carboxypeptidase II {Wheat
(Triticum vulgare) [TaxId: 4565]}
Length = 409
Score = 23.6 bits (50), Expect = 8.9
Identities = 15/67 (22%), Positives = 20/67 (29%), Gaps = 1/67 (1%)
Query: 29 VVHIDARGSAYRSKEQEHSVYRNLGRYEIADQI-AVVKYLTERFQFIDKTKVGIWGWSYG 87
V+ +D+ S S G A A + ERF I G SY
Sbjct: 97 VLFLDSPAGVGFSYTNTSSDIYTSGDNRTAHDSYAFLAKWFERFPHYKYRDFYIAGESYA 156
Query: 88 GFATAMV 94
G +
Sbjct: 157 GHYVPEL 163
>d1dq3a1 b.86.1.2 (A:1-128,A:415-454) PI-Pfui intein {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 168
Score = 23.1 bits (49), Expect = 9.8
Identities = 5/16 (31%), Positives = 9/16 (56%)
Query: 16 DFHTYLVSKRHVIVVH 31
++ YL + +I VH
Sbjct: 152 NYQNYLAGENGMIFVH 167
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.138 0.423
Gapped
Lambda K H
0.267 0.0504 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 439,622
Number of extensions: 17658
Number of successful extensions: 65
Number of sequences better than 10.0: 1
Number of HSP's gapped: 62
Number of HSP's successfully gapped: 22
Length of query: 117
Length of database: 2,407,596
Length adjustment: 74
Effective length of query: 43
Effective length of database: 1,391,576
Effective search space: 59837768
Effective search space used: 59837768
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.4 bits)