BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1455
(221 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P21329|RTJK_DROFU RNA-directed DNA polymerase from mobile element jockey
OS=Drosophila funebris GN=jockey\pol PE=1 SV=1
Length = 916
Score = 35.8 bits (81), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 31/56 (55%)
Query: 10 LRLYKCYVRPIIEYGAPIYGSASEKQLSRLEPIQNMALRIATGAFKSSRIENLQVD 65
+++YKC V P + Y +YG A+ L+++ +Q LR +GA R +++ D
Sbjct: 797 VKIYKCIVAPGLFYAIQVYGIAARTHLNKIRVLQAKMLRKISGAPWYMRTRDIECD 852
>sp|Q04322|GYL1_YEAST Probable GTPase-activating protein GYL1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=GYL1 PE=1 SV=1
Length = 720
Score = 35.0 bits (79), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 32/52 (61%)
Query: 98 QIYSLITPVDLKAFLKNEFKKKWQIWWDNIQPPNKIKEIKDTVKEWQTSNRN 149
Q+ + P DLK L+ KK Q+ +N++ ++I E++ ++E +T+N+N
Sbjct: 643 QVLGVYVPNDLKKDLEETMKKNTQVMDENLKLQDRISELERLIEEIKTANKN 694
>sp|P31822|POL_FIVT2 Pol polyprotein OS=Feline immunodeficiency virus (isolate TM2)
GN=pol PE=3 SV=1
Length = 1124
Score = 35.0 bits (79), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 14/23 (60%), Positives = 16/23 (69%)
Query: 72 IIWIPSHCGIAGNEEVDKAAQSF 94
I W+P H GI GNEEVDK Q+
Sbjct: 687 IDWVPGHKGIPGNEEVDKLCQTM 709
>sp|P19028|POL_FIVSD Pol polyprotein OS=Feline immunodeficiency virus (strain San Diego)
GN=pol PE=3 SV=1
Length = 1124
Score = 35.0 bits (79), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 14/23 (60%), Positives = 16/23 (69%)
Query: 72 IIWIPSHCGIAGNEEVDKAAQSF 94
I W+P H GI GNEEVDK Q+
Sbjct: 688 IDWVPGHKGIPGNEEVDKLCQTM 710
>sp|P16088|POL_FIVPE Pol polyprotein OS=Feline immunodeficiency virus (isolate Petaluma)
GN=pol PE=1 SV=1
Length = 1124
Score = 35.0 bits (79), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 14/23 (60%), Positives = 16/23 (69%)
Query: 72 IIWIPSHCGIAGNEEVDKAAQSF 94
I W+P H GI GNEEVDK Q+
Sbjct: 688 IDWVPGHKGIPGNEEVDKLCQTM 710
>sp|Q82851|POL_JEMBR Gag-Pol polyprotein OS=Jembrana disease virus GN=gag-pol PE=3 SV=1
Length = 1432
Score = 34.3 bits (77), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 70 VKIIWIPSHCGIAGNEEVDKAAQSFTNAQI-YSLITPVDLKAFLKNEFKKKWQIWWDNIQ 128
V + W+P H GI GN EVD+ Q I SL + L+A K I+W+ ++
Sbjct: 1053 VGVSWVPGHKGIGGNTEVDQEVQKALQGPITVSLPQEILLEAGETKLVKTG--IFWEGLR 1110
Query: 129 P 129
P
Sbjct: 1111 P 1111
>sp|P04588|POL_HV1MA Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype A (isolate MAL) GN=gag-pol PE=1 SV=3
Length = 1440
Score = 33.9 bits (76), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 68 NNVKIIWIPSHCGIAGNEEVDKAAQS 93
+ V + W+P+H GI GNE+VDK S
Sbjct: 1121 DKVYLSWVPAHKGIGGNEQVDKLVSS 1146
>sp|Q9QBZ9|POL_HV197 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype K (isolate 97ZR-EQTB11) GN=gag-pol PE=3 SV=2
Length = 1429
Score = 33.9 bits (76), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 68 NNVKIIWIPSHCGIAGNEEVDKAAQS 93
+ V + W+P+H GI GNE+VDK S
Sbjct: 1111 DRVYLSWVPAHKGIGGNEQVDKLVSS 1136
>sp|Q8AII1|POL_SIVTN Gag-Pol polyprotein OS=Simian immunodeficiency virus (isolate TAN1)
GN=gag-pol PE=3 SV=4
Length = 1462
Score = 33.9 bits (76), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 16/20 (80%)
Query: 70 VKIIWIPSHCGIAGNEEVDK 89
+ + W+P+H GI GNEEVDK
Sbjct: 1145 IYLAWVPAHKGIGGNEEVDK 1164
>sp|Q9Q720|POL_HV1V9 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype H (isolate VI991) GN=gag-pol PE=3 SV=3
Length = 1436
Score = 33.5 bits (75), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 3/81 (3%)
Query: 74 WIPSHCGIAGNEEVDKAAQSFTNAQIYSLITPVDLKAFLKNEFKKKWQIWWDNIQ-PPNK 132
W+P+H GI GNE+VDK S ++ + +D ++ W+ + PP
Sbjct: 1123 WVPAHKGIGGNEQVDKLVSSGIRKVLF--LDGIDKAQVQHEKYHSNWRAMASDFNLPPIV 1180
Query: 133 IKEIKDTVKEWQTSNRNLRKE 153
KEI + + Q + +
Sbjct: 1181 AKEIVASCDKCQLKGEAMHGQ 1201
>sp|Q75002|POL_HV1ET Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype C (isolate ETH2220) GN=gag-pol PE=3 SV=3
Length = 1439
Score = 33.5 bits (75), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 63 QVDAGNNVKIIWIPSHCGIAGNEEVDKAAQS 93
Q+ + V + W+P+H GI GNE+VDK S
Sbjct: 1115 QLISKERVYLSWVPAHKGIGGNEQVDKLVSS 1145
>sp|Q9NBX4|RTXE_DROME Probable RNA-directed DNA polymerase from transposon X-element
OS=Drosophila melanogaster GN=X-element\ORF2 PE=3 SV=1
Length = 908
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%)
Query: 10 LRLYKCYVRPIIEYGAPIYGSASEKQLSRLEPIQNMALRIATGA 53
L +YK + P +YG I+G A + + R++ IQN R+ TG
Sbjct: 792 LTIYKQILAPNWKYGCQIWGLACDSHIKRIQAIQNKVARLITGC 835
>sp|O12158|POL_HV192 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype C (isolate 92BR025) GN=gag-pol PE=1 SV=2
Length = 1431
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 70 VKIIWIPSHCGIAGNEEVDKAAQS 93
V + W+P+H GI GNE+VDK S
Sbjct: 1114 VYLSWVPAHKGIGGNEQVDKLVSS 1137
>sp|Q9WC54|POL_HV1S2 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype J (isolate SE9280) GN=gag-pol PE=3 SV=3
Length = 1432
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 70 VKIIWIPSHCGIAGNEEVDKAAQS 93
V + W+P+H GI GNE+VDK S
Sbjct: 1115 VYLSWVPAHKGIGGNEQVDKLVSS 1138
>sp|O91080|POL_HV1YF Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group N
(isolate YBF30) GN=gag-pol PE=3 SV=3
Length = 1449
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 70 VKIIWIPSHCGIAGNEEVDKAAQS 93
V + W+P+H GI GNE+VDK S
Sbjct: 1128 VYLSWVPAHKGIGGNEQVDKLVSS 1151
>sp|Q9WC63|POL_HV1S9 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype J (isolate SE9173) GN=gag-pol PE=3 SV=3
Length = 1432
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 70 VKIIWIPSHCGIAGNEEVDKAAQS 93
V + W+P+H GI GNE+VDK S
Sbjct: 1115 VYLSWVPAHKGIGGNEQVDKLVSS 1138
>sp|Q9QBZ5|POL_HV1MP Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype F2 (isolate MP255) GN=gag-pol PE=3 SV=3
Length = 1430
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 70 VKIIWIPSHCGIAGNEEVDKAAQS 93
V + W+P+H GI GNE+VDK S
Sbjct: 1113 VYLSWVPAHKGIGGNEQVDKLVSS 1136
>sp|O93215|POL_HV190 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype H (isolate 90CF056) GN=gag-pol PE=3 SV=4
Length = 1435
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 70 VKIIWIPSHCGIAGNEEVDKAAQS 93
V + W+P+H GI GNE+VDK S
Sbjct: 1118 VYLSWVPAHKGIGGNEQVDKLVSS 1141
>sp|P24740|POL_HV1U4 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype A (isolate U455) GN=gag-pol PE=1 SV=3
Length = 1428
Score = 33.5 bits (75), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 70 VKIIWIPSHCGIAGNEEVDKAAQS 93
V + W+P+H GI GNE+VDK S
Sbjct: 1111 VYLSWVPAHKGIGGNEQVDKLVSS 1134
>sp|O89940|POL_HV1SE Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype G (isolate SE6165) GN=gag-pol PE=3 SV=3
Length = 1433
Score = 33.1 bits (74), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 70 VKIIWIPSHCGIAGNEEVDKAAQS 93
V + W+P+H GI GNE+VDK S
Sbjct: 1116 VYLSWVPAHKGIGGNEQVDKLVSS 1139
>sp|P35963|POL_HV1Y2 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate YU-2) GN=gag-pol PE=1 SV=3
Length = 1435
Score = 33.1 bits (74), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 16/20 (80%)
Query: 70 VKIIWIPSHCGIAGNEEVDK 89
V + W+P+H GI GNE+VDK
Sbjct: 1118 VYLAWVPAHKGIGGNEQVDK 1137
>sp|P03366|POL_HV1B1 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate BH10) GN=gag-pol PE=1 SV=3
Length = 1447
Score = 33.1 bits (74), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 16/20 (80%)
Query: 70 VKIIWIPSHCGIAGNEEVDK 89
V + W+P+H GI GNE+VDK
Sbjct: 1130 VYLAWVPAHKGIGGNEQVDK 1149
>sp|P04587|POL_HV1B5 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate BH5) GN=gag-pol PE=1 SV=3
Length = 1447
Score = 33.1 bits (74), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 16/20 (80%)
Query: 70 VKIIWIPSHCGIAGNEEVDK 89
V + W+P+H GI GNE+VDK
Sbjct: 1130 VYLAWVPAHKGIGGNEQVDK 1149
>sp|P04585|POL_HV1H2 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate HXB2) GN=gag-pol PE=1 SV=4
Length = 1435
Score = 33.1 bits (74), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 16/20 (80%)
Query: 70 VKIIWIPSHCGIAGNEEVDK 89
V + W+P+H GI GNE+VDK
Sbjct: 1118 VYLAWVPAHKGIGGNEQVDK 1137
>sp|P03367|POL_HV1BR Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate BRU/LAI) GN=gag-pol PE=1 SV=3
Length = 1447
Score = 33.1 bits (74), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 16/20 (80%)
Query: 70 VKIIWIPSHCGIAGNEEVDK 89
V + W+P+H GI GNE+VDK
Sbjct: 1130 VYLAWVPAHKGIGGNEQVDK 1149
>sp|Q73368|POL_HV1B9 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (strain 89.6) GN=gag-pol PE=3 SV=3
Length = 1435
Score = 33.1 bits (74), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 16/20 (80%)
Query: 70 VKIIWIPSHCGIAGNEEVDK 89
V + W+P+H GI GNE+VDK
Sbjct: 1118 VYLAWVPAHKGIGGNEQVDK 1137
>sp|P03369|POL_HV1A2 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate ARV2/SF2) GN=gag-pol PE=1 SV=3
Length = 1437
Score = 33.1 bits (74), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 16/20 (80%)
Query: 70 VKIIWIPSHCGIAGNEEVDK 89
V + W+P+H GI GNE+VDK
Sbjct: 1120 VYLAWVPAHKGIGGNEQVDK 1139
>sp|P20892|POL_HV1OY Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate OYI) GN=gag-pol PE=3 SV=3
Length = 1434
Score = 33.1 bits (74), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 16/20 (80%)
Query: 70 VKIIWIPSHCGIAGNEEVDK 89
V + W+P+H GI GNE+VDK
Sbjct: 1117 VYLAWVPAHKGIGGNEQVDK 1136
>sp|P0C6F2|POL_HV1LW Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate LW123) GN=gag-pol PE=1 SV=1
Length = 1435
Score = 33.1 bits (74), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 16/20 (80%)
Query: 70 VKIIWIPSHCGIAGNEEVDK 89
V + W+P+H GI GNE+VDK
Sbjct: 1118 VYLAWVPAHKGIGGNEQVDK 1137
>sp|O41798|POL_HV19N Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype G (isolate 92NG083) GN=gag-pol PE=3 SV=3
Length = 1435
Score = 33.1 bits (74), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 70 VKIIWIPSHCGIAGNEEVDKAAQS 93
V + W+P+H GI GNE+VDK S
Sbjct: 1118 VYLSWVPAHKGIGGNEQVDKLVSS 1141
>sp|P05961|POL_HV1MN Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate MN) GN=gag-pol PE=1 SV=3
Length = 1441
Score = 33.1 bits (74), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 16/20 (80%)
Query: 70 VKIIWIPSHCGIAGNEEVDK 89
V + W+P+H GI GNE+VDK
Sbjct: 1124 VYLAWVPAHKGIGGNEQVDK 1143
>sp|P04589|POL_HV1EL Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype D (isolate ELI) GN=gag-pol PE=3 SV=3
Length = 1435
Score = 33.1 bits (74), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 16/20 (80%)
Query: 70 VKIIWIPSHCGIAGNEEVDK 89
V + W+P+H GI GNE+VDK
Sbjct: 1118 VYLAWVPAHKGIGGNEQVDK 1137
>sp|P18802|POL_HV1ND Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype D (isolate NDK) GN=gag-pol PE=3 SV=3
Length = 1432
Score = 33.1 bits (74), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 16/20 (80%)
Query: 70 VKIIWIPSHCGIAGNEEVDK 89
V + W+P+H GI GNE+VDK
Sbjct: 1115 VYLAWVPAHKGIGGNEQVDK 1134
>sp|P20875|POL_HV1JR Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate JRCSF) GN=gag-pol PE=1 SV=3
Length = 1439
Score = 33.1 bits (74), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 16/20 (80%)
Query: 70 VKIIWIPSHCGIAGNEEVDK 89
V + W+P+H GI GNE+VDK
Sbjct: 1122 VYLAWVPAHKGIGGNEQVDK 1141
>sp|P12499|POL_HV1Z2 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype D (isolate Z2/CDC-Z34) GN=gag-pol PE=1 SV=3
Length = 1436
Score = 33.1 bits (74), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 16/20 (80%)
Query: 70 VKIIWIPSHCGIAGNEEVDK 89
V + W+P+H GI GNE+VDK
Sbjct: 1119 VYLAWVPAHKGIGGNEQVDK 1138
>sp|O89290|POL_HV193 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype F1 (isolate 93BR020) GN=gag-pol PE=3 SV=3
Length = 1430
Score = 32.7 bits (73), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 16/20 (80%)
Query: 70 VKIIWIPSHCGIAGNEEVDK 89
V + W+P+H GI GNE+VDK
Sbjct: 1113 VYLSWVPAHKGIGGNEQVDK 1132
>sp|Q9QSR3|POL_HV1VI Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype F1 (isolate VI850) GN=gag-pol PE=3 SV=3
Length = 1430
Score = 32.7 bits (73), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 16/20 (80%)
Query: 70 VKIIWIPSHCGIAGNEEVDK 89
V + W+P+H GI GNE+VDK
Sbjct: 1113 VYLSWVPAHKGIGGNEQVDK 1132
>sp|Q9QBZ1|POL_HV1M2 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype F2 (isolate MP257) GN=gag-pol PE=3 SV=3
Length = 1434
Score = 32.7 bits (73), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 16/20 (80%)
Query: 70 VKIIWIPSHCGIAGNEEVDK 89
V + W+P+H GI GNE+VDK
Sbjct: 1117 VYLSWVPAHKGIGGNEQVDK 1136
>sp|Q1A267|POL_SIVMB Gag-Pol polyprotein OS=Simian immunodeficiency virus (isolate MB66)
GN=gag-pol PE=3 SV=4
Length = 1438
Score = 32.7 bits (73), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 70 VKIIWIPSHCGIAGNEEVDKAAQS 93
V + W+P+H GI GNE++DK S
Sbjct: 1117 VYLSWVPAHKGIGGNEQIDKLVSS 1140
>sp|P05895|POL_SIVVT Gag-Pol polyprotein OS=Simian immunodeficiency virus agm.vervet
(isolate AGM TYO-1) GN=gag-pol PE=3 SV=2
Length = 1467
Score = 32.3 bits (72), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/16 (68%), Positives = 14/16 (87%)
Query: 74 WIPSHCGIAGNEEVDK 89
W+P+H GI GNEE+DK
Sbjct: 1151 WVPAHKGIGGNEEIDK 1166
>sp|P27973|POL_SIVV1 Gag-Pol polyprotein OS=Simian immunodeficiency virus agm.vervet
(isolate AGM155) GN=gag-pol PE=3 SV=2
Length = 1470
Score = 32.3 bits (72), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/16 (68%), Positives = 14/16 (87%)
Query: 74 WIPSHCGIAGNEEVDK 89
W+P+H GI GNEE+DK
Sbjct: 1148 WVPAHKGIGGNEEIDK 1163
>sp|P21328|RTJK_DROME RNA-directed DNA polymerase from mobile element jockey
OS=Drosophila melanogaster GN=pol PE=1 SV=1
Length = 916
Score = 32.3 bits (72), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 30/54 (55%)
Query: 12 LYKCYVRPIIEYGAPIYGSASEKQLSRLEPIQNMALRIATGAFKSSRIENLQVD 65
+YK + P + YG +YG A++ L+++ +Q LR +GA R +++ D
Sbjct: 799 IYKSILAPCLFYGLQVYGIAAKSHLNKIRILQAKTLRRISGAPWYMRTRDIERD 852
>sp|P05959|POL_HV1RH Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate RF/HAT3) GN=gag-pol PE=1 SV=3
Length = 1436
Score = 32.3 bits (72), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 16/20 (80%)
Query: 70 VKIIWIPSHCGIAGNEEVDK 89
V + W+P+H GI GNE+VD+
Sbjct: 1119 VYLAWVPAHKGIGGNEQVDR 1138
>sp|Q9SAA4|B3GT1_ARATH Probable beta-1,3-galactosyltransferase 1 OS=Arabidopsis thaliana
GN=B3GALT1 PE=2 SV=2
Length = 384
Score = 32.3 bits (72), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 112 LKNEFKKKWQIWWDNIQPPNKIKEIKDTVKE-WQTSNRNLRK---EEIILSRLRIGHTRL 167
+ NE KK+ I ++ +D+V+ W NL+K E+ I+ R IGH+ L
Sbjct: 106 ISNEAKKRKYFMVIGINTAFSSRKRRDSVRSTWMPQGENLKKLEEEKGIIVRFVIGHSVL 165
Query: 168 THGFL 172
+HG L
Sbjct: 166 SHGIL 170
>sp|P18042|POL_HV2G1 Gag-Pol polyprotein OS=Human immunodeficiency virus type 2 subtype A
(isolate Ghana-1) GN=gag-pol PE=1 SV=4
Length = 1464
Score = 32.0 bits (71), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 45 MALRIATGAFKSSRIENLQVD---AGNNVKIIWIPSHCGIAGNEEVD 88
M + + SRI N ++ V + W+P+H GI GN+EVD
Sbjct: 1114 MGIVVGQPTESESRIVNQIIEDMIKKEAVYVAWVPAHKGIGGNQEVD 1160
>sp|Q79666|POL_HV1MV Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group O
(isolate MVP5180) GN=gag-pol PE=3 SV=3
Length = 1446
Score = 32.0 bits (71), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 16/20 (80%)
Query: 70 VKIIWIPSHCGIAGNEEVDK 89
V + W+P+H GI GNE++DK
Sbjct: 1119 VYLTWVPAHKGIGGNEKIDK 1138
>sp|Q77373|POL_HV1AN Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group O
(isolate ANT70) GN=gag-pol PE=3 SV=3
Length = 1435
Score = 32.0 bits (71), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 69 NVKIIWIPSHCGIAGNEEVDK 89
V + W+P+H GI GNE++DK
Sbjct: 1116 QVYLTWVPAHKGIGGNEKIDK 1136
>sp|P17757|POL_HV2D1 Gag-Pol polyprotein OS=Human immunodeficiency virus type 2 subtype A
(isolate D194) GN=gag-pol PE=3 SV=3
Length = 1462
Score = 32.0 bits (71), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 70 VKIIWIPSHCGIAGNEEVD 88
V + W+P+H GI GN+EVD
Sbjct: 1140 VYVAWVPAHKGIGGNQEVD 1158
>sp|Q9QBY3|POL_HV196 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype K (isolate 96CM-MP535) GN=gag-pol PE=3 SV=3
Length = 1430
Score = 32.0 bits (71), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 11/16 (68%), Positives = 14/16 (87%)
Query: 74 WIPSHCGIAGNEEVDK 89
W+P+H GI GNE+VDK
Sbjct: 1117 WVPAHKGIGGNEQVDK 1132
>sp|P18096|POL_HV2BE Gag-Pol polyprotein OS=Human immunodeficiency virus type 2 subtype A
(isolate BEN) GN=gag-pol PE=3 SV=4
Length = 1550
Score = 32.0 bits (71), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 70 VKIIWIPSHCGIAGNEEVD 88
V + W+P+H GI GN+EVD
Sbjct: 1141 VYVAWVPAHKGIGGNQEVD 1159
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.137 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,237,902
Number of Sequences: 539616
Number of extensions: 3351036
Number of successful extensions: 8582
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 8496
Number of HSP's gapped (non-prelim): 100
length of query: 221
length of database: 191,569,459
effective HSP length: 113
effective length of query: 108
effective length of database: 130,592,851
effective search space: 14104027908
effective search space used: 14104027908
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)