Query psy1455
Match_columns 221
No_of_seqs 189 out of 917
Neff 7.6
Searched_HMMs 46136
Date Fri Aug 16 22:43:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1455.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1455hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00075 RNase_H: RNase H; In 98.3 3.4E-07 7.3E-12 69.8 2.4 31 65-95 100-131 (132)
2 PRK08719 ribonuclease H; Revie 98.2 7.9E-07 1.7E-11 70.2 2.2 29 67-95 117-145 (147)
3 PRK00203 rnhA ribonuclease H; 98.1 8.7E-07 1.9E-11 70.0 1.7 32 67-98 112-143 (150)
4 PRK06548 ribonuclease H; Provi 97.9 4.1E-06 8.8E-11 67.1 1.7 29 68-96 113-141 (161)
5 COG0328 RnhA Ribonuclease HI [ 97.6 2.2E-05 4.8E-10 62.2 1.6 28 69-96 117-144 (154)
6 cd06222 RnaseH RNase H (RNase 97.2 0.00028 6.2E-09 51.6 2.7 29 66-94 101-129 (130)
7 KOG3752|consensus 97.0 0.00048 1E-08 61.4 3.0 30 66-95 334-363 (371)
8 PRK13907 rnhA ribonuclease H; 75.9 1.7 3.7E-05 32.7 1.6 23 69-95 103-125 (128)
9 PRK07708 hypothetical protein; 60.8 7.2 0.00016 32.7 2.5 26 68-97 183-208 (219)
10 PF13456 RVT_3: Reverse transc 53.5 9.6 0.00021 25.8 1.8 24 68-95 62-85 (87)
11 PRK07238 bifunctional RNase H/ 46.4 12 0.00027 33.5 1.8 23 68-94 107-129 (372)
12 PF09107 SelB-wing_3: Elongati 37.2 50 0.0011 20.9 3.0 26 193-218 15-40 (50)
13 PF04433 SWIRM: SWIRM domain; 34.3 60 0.0013 22.6 3.4 25 195-219 60-85 (86)
14 PF04863 EGF_alliinase: Alliin 27.8 13 0.00027 24.3 -0.9 24 160-184 18-41 (56)
15 PF01022 HTH_5: Bacterial regu 27.6 59 0.0013 19.8 2.2 28 193-220 20-47 (47)
16 PF08097 Toxin_26: Conotoxin T 26.8 24 0.00052 15.1 0.2 8 18-25 3-10 (11)
17 PF00325 Crp: Bacterial regula 24.5 1.1E+02 0.0023 17.6 2.7 26 193-218 7-32 (32)
18 PF04182 B-block_TFIIIC: B-blo 20.2 99 0.0021 21.0 2.3 28 193-220 23-50 (75)
No 1
>PF00075 RNase_H: RNase H; InterPro: IPR002156 The RNase H domain is responsible for hydrolysis of the RNA portion of RNA x DNA hybrids, and this activity requires the presence of divalent cations (Mg2+ or Mn2+) that bind its active site. This domain is a part of a large family of homologous RNase H enzymes of which the RNase HI protein from Escherichia coli is the best characterised []. Secondary structure predictions for the enzymes from E. coli, yeast, human liver and diverse retroviruses (such as Rous sarcoma virus and the Foamy viruses) supported, in every case, the five beta-strands (1 to 5) and four or five alpha-helices (A, B/C, D, E) that have been identified by crystallography in the RNase H domain of Human immunodeficiency virus 1 (HIV-1) reverse transcriptase and in E. coli RNase H []. Reverse transcriptase (RT) is a modular enzyme carrying polymerase and ribonuclease H (RNase H) activities in separable domains. Reverse transcriptase (RT) converts the single-stranded RNA genome of a retrovirus into a double-stranded DNA copy for integration into the host genome. This process requires ribonuclease H as well as RNA- and DNA-directed DNA polymerase activities. Retroviral RNase H is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. Bacterial RNase H 3.1.26.4 from EC catalyses endonucleolytic cleavage to 5'-phosphomonoester acting on RNA-DNA hybrids. The 3D structure of the RNase H domain from diverse bacteria and retroviruses has been solved [, , ]. All have four beta strands and four to five alpha helices. The E. coli RNase H1 protein binds a single Mg2+ ion cofactor in the active site of the enzyme. The divalent cation is bound by the carboxyl groups of four acidic residues, Asp-10, Glu-48, Asp-70, and Asp-134 []. The first three acidic residues are highly conserved in all bacterial and retroviral RNase H sequences. ; GO: 0003676 nucleic acid binding, 0004523 ribonuclease H activity; PDB: 3LP3_B 2KW4_A 3P1G_A 1RIL_A 2RPI_A 4EQJ_G 4EP2_B 3OTY_P 3U3G_D 2ZQB_D ....
Probab=98.30 E-value=3.4e-07 Score=69.79 Aligned_cols=31 Identities=35% Similarity=0.787 Sum_probs=27.9
Q ss_pred hcCCcceeeeccCCCCC-ccchhHhHHHhhcc
Q psy1455 65 DAGNNVKIIWIPSHCGI-AGNEEVDKAAQSFT 95 (221)
Q Consensus 65 ~~g~~v~~~wvPgH~gI-~GNE~AD~~Ak~~~ 95 (221)
..+.+|.|.|||||+|+ .|||.||++||.++
T Consensus 100 ~~~~~v~~~~V~~H~~~~~~N~~aD~lAk~a~ 131 (132)
T PF00075_consen 100 SRGIKVRFRWVPGHSGVPQGNERADRLAKEAA 131 (132)
T ss_dssp HHSSEEEEEESSSSSSSHHHHHHHHHHHHHHH
T ss_pred ccceEEeeeeccCcCCCchhHHHHHHHHHHhc
Confidence 45789999999999999 69999999999764
No 2
>PRK08719 ribonuclease H; Reviewed
Probab=98.18 E-value=7.9e-07 Score=70.20 Aligned_cols=29 Identities=34% Similarity=0.479 Sum_probs=26.4
Q ss_pred CCcceeeeccCCCCCccchhHhHHHhhcc
Q psy1455 67 GNNVKIIWIPSHCGIAGNEEVDKAAQSFT 95 (221)
Q Consensus 67 g~~v~~~wvPgH~gI~GNE~AD~~Ak~~~ 95 (221)
...|.|.|||||+|++|||.||.+|+.++
T Consensus 117 ~~~i~~~~VkgH~g~~~Ne~aD~lA~~a~ 145 (147)
T PRK08719 117 RKYVEVEKVTAHSGIEGNEAADMLAQAAA 145 (147)
T ss_pred CCcEEEEEecCCCCChhHHHHHHHHHHHh
Confidence 45799999999999999999999999765
No 3
>PRK00203 rnhA ribonuclease H; Reviewed
Probab=98.15 E-value=8.7e-07 Score=69.97 Aligned_cols=32 Identities=25% Similarity=0.463 Sum_probs=28.3
Q ss_pred CCcceeeeccCCCCCccchhHhHHHhhccccc
Q psy1455 67 GNNVKIIWIPSHCGIAGNEEVDKAAQSFTNAQ 98 (221)
Q Consensus 67 g~~v~~~wvPgH~gI~GNE~AD~~Ak~~~~~~ 98 (221)
...|.|.|||||+|++|||.||++|+.+...+
T Consensus 112 ~~~v~~~wV~~H~~~~~N~~AD~lA~~a~~~~ 143 (150)
T PRK00203 112 RHQIKWHWVKGHAGHPENERCDELARAGAEEA 143 (150)
T ss_pred cCceEEEEecCCCCCHHHHHHHHHHHHHHHHh
Confidence 36799999999999999999999999876544
No 4
>PRK06548 ribonuclease H; Provisional
Probab=97.93 E-value=4.1e-06 Score=67.11 Aligned_cols=29 Identities=31% Similarity=0.589 Sum_probs=26.3
Q ss_pred CcceeeeccCCCCCccchhHhHHHhhccc
Q psy1455 68 NNVKIIWIPSHCGIAGNEEVDKAAQSFTN 96 (221)
Q Consensus 68 ~~v~~~wvPgH~gI~GNE~AD~~Ak~~~~ 96 (221)
..|+|.|||||+|.+|||.||.+|++++.
T Consensus 113 ~~v~~~wVkgHsg~~gNe~aD~LA~~aa~ 141 (161)
T PRK06548 113 RNIRMSWVNAHTGHPLNEAADSLARQAAN 141 (161)
T ss_pred CceEEEEEecCCCCHHHHHHHHHHHHHHH
Confidence 47999999999999999999999987653
No 5
>COG0328 RnhA Ribonuclease HI [DNA replication, recombination, and repair]
Probab=97.63 E-value=2.2e-05 Score=62.24 Aligned_cols=28 Identities=29% Similarity=0.426 Sum_probs=25.8
Q ss_pred cceeeeccCCCCCccchhHhHHHhhccc
Q psy1455 69 NVKIIWIPSHCGIAGNEEVDKAAQSFTN 96 (221)
Q Consensus 69 ~v~~~wvPgH~gI~GNE~AD~~Ak~~~~ 96 (221)
.|.+.|||||.|-++||+||++|+.+..
T Consensus 117 ~v~~~WVkgH~g~~~NeraD~LA~~~~~ 144 (154)
T COG0328 117 LVFWEWVKGHAGHPENERADQLAREAAR 144 (154)
T ss_pred eEEEEEeeCCCCChHHHHHHHHHHHHHH
Confidence 7899999999999999999999987754
No 6
>cd06222 RnaseH RNase H (RNase HI) is an endonuclease that cleaves the RNA strand of an RNA/DNA hybrid in a not sequence-specific manner. One of the important functions of RNase H is to remove Okazaki fragments during DNA replication. RNase H knockout mice lack mitochondrial DNA replication and die as embryos. The retroviral reverse transcriptase contains an RNase H domain that plays an important role in converting a single stranded retroviral genomic RNA into a dsDNA for integration into host chromosomes. RNase H inhibitors have been explored as an anti-HIV drug target because RNase H inactivation inhibits reverse transcription.
Probab=97.17 E-value=0.00028 Score=51.63 Aligned_cols=29 Identities=38% Similarity=0.713 Sum_probs=26.3
Q ss_pred cCCcceeeeccCCCCCccchhHhHHHhhc
Q psy1455 66 AGNNVKIIWIPSHCGIAGNEEVDKAAQSF 94 (221)
Q Consensus 66 ~g~~v~~~wvPgH~gI~GNE~AD~~Ak~~ 94 (221)
.+..+.|.|||+|+++.+|+.||.+|+.+
T Consensus 101 ~~~~~~i~~v~~h~~~~~n~~ad~la~~~ 129 (130)
T cd06222 101 RFHKVRFEWVPGHSGIEGNERADALAKEA 129 (130)
T ss_pred CCCeEEEEEcCCCCCCcchHHHHHHHHhh
Confidence 46689999999999999999999999864
No 7
>KOG3752|consensus
Probab=97.01 E-value=0.00048 Score=61.42 Aligned_cols=30 Identities=30% Similarity=0.450 Sum_probs=27.3
Q ss_pred cCCcceeeeccCCCCCccchhHhHHHhhcc
Q psy1455 66 AGNNVKIIWIPSHCGIAGNEEVDKAAQSFT 95 (221)
Q Consensus 66 ~g~~v~~~wvPgH~gI~GNE~AD~~Ak~~~ 95 (221)
.+..|.+.|||||.||.|||+||.+|+++.
T Consensus 334 ~~~~vq~~~V~Gh~gi~gne~Ad~lARkgs 363 (371)
T KOG3752|consen 334 SNKKVQQEYVGGHSGILGNEMADALARKGS 363 (371)
T ss_pred ccCceEEEEecCcCCcchHHHHHHHHhhhh
Confidence 468899999999999999999999998764
No 8
>PRK13907 rnhA ribonuclease H; Provisional
Probab=75.88 E-value=1.7 Score=32.71 Aligned_cols=23 Identities=35% Similarity=0.458 Sum_probs=19.0
Q ss_pred cceeeeccCCCCCccchhHhHHHhhcc
Q psy1455 69 NVKIIWIPSHCGIAGNEEVDKAAQSFT 95 (221)
Q Consensus 69 ~v~~~wvPgH~gI~GNE~AD~~Ak~~~ 95 (221)
.+.+.|||.+ +|+.||.+|+.+.
T Consensus 103 ~~~~~~v~r~----~N~~Ad~LA~~a~ 125 (128)
T PRK13907 103 LFFIKWIPSS----QNKVADELARKAI 125 (128)
T ss_pred ceEEEEcCch----hchhHHHHHHHHH
Confidence 4567999985 8999999998765
No 9
>PRK07708 hypothetical protein; Validated
Probab=60.80 E-value=7.2 Score=32.73 Aligned_cols=26 Identities=19% Similarity=0.034 Sum_probs=20.0
Q ss_pred CcceeeeccCCCCCccchhHhHHHhhcccc
Q psy1455 68 NNVKIIWIPSHCGIAGNEEVDKAAQSFTNA 97 (221)
Q Consensus 68 ~~v~~~wvPgH~gI~GNE~AD~~Ak~~~~~ 97 (221)
..+.+.|||- ..|+.||.+|+.+.+.
T Consensus 183 l~~~~~~VpR----~~N~~AD~LAk~Al~~ 208 (219)
T PRK07708 183 LTPVYEPISR----KQNKEADQLATQALEG 208 (219)
T ss_pred ceEEEEECCc----hhhhHHHHHHHHHHhc
Confidence 3467788875 4699999999988753
No 10
>PF13456 RVT_3: Reverse transcriptase-like; PDB: 3ALY_A 2EHG_A 3HST_B.
Probab=53.55 E-value=9.6 Score=25.81 Aligned_cols=24 Identities=29% Similarity=0.227 Sum_probs=17.7
Q ss_pred CcceeeeccCCCCCccchhHhHHHhhcc
Q psy1455 68 NNVKIIWIPSHCGIAGNEEVDKAAQSFT 95 (221)
Q Consensus 68 ~~v~~~wvPgH~gI~GNE~AD~~Ak~~~ 95 (221)
..+.+.||| =++|..||.+||.+.
T Consensus 62 ~~~~~~~i~----r~~N~~A~~LA~~a~ 85 (87)
T PF13456_consen 62 WNVSVSHIP----REQNKVADALAKFAL 85 (87)
T ss_dssp SCEEEEE------GGGSHHHHHHHHHHH
T ss_pred cceEEEEEC----hHHhHHHHHHHHHHh
Confidence 468899998 458999999998653
No 11
>PRK07238 bifunctional RNase H/acid phosphatase; Provisional
Probab=46.37 E-value=12 Score=33.47 Aligned_cols=23 Identities=35% Similarity=0.601 Sum_probs=19.4
Q ss_pred CcceeeeccCCCCCccchhHhHHHhhc
Q psy1455 68 NNVKIIWIPSHCGIAGNEEVDKAAQSF 94 (221)
Q Consensus 68 ~~v~~~wvPgH~gI~GNE~AD~~Ak~~ 94 (221)
..+.+.|||. .+|+.||.+|+.+
T Consensus 107 ~~~~i~~v~r----~~N~~AD~LA~~a 129 (372)
T PRK07238 107 GRVTYTWIPR----ARNAHADRLANEA 129 (372)
T ss_pred CceEEEECCc----hhhhHHHHHHHHH
Confidence 4689999997 5899999999855
No 12
>PF09107 SelB-wing_3: Elongation factor SelB, winged helix ; InterPro: IPR015191 This entry represents a domain with a winged helix-type fold, which consists of a closed 3-helical bundle with a right-handed twist, and a small beta-sheet wing []. Different winged helix domains share a common structure, but can differ in sequence. This entry is designated "type 3". The winged helix motif is involved in both DNA and RNA binding. In the elongation factor SelB, the winged helix domains recognise RNA, allowing the complex to wrap around the small ribosomal subunit. In bacteria, the incorporation of the amino acid selenocysteine into proteins requires elongation factor SelB, which binds both transfer RNA (tRNA) and mRNA. SelB binds to an mRNA hairpin formed by the selenocysteine insertion sequence (SECIS) with extremely high specificity []. ; GO: 0003723 RNA binding, 0003746 translation elongation factor activity, 0005525 GTP binding, 0001514 selenocysteine incorporation, 0005737 cytoplasm; PDB: 2PJP_A 2UWM_A 1WSU_B 1LVA_A 2PLY_A.
Probab=37.25 E-value=50 Score=20.95 Aligned_cols=26 Identities=19% Similarity=0.411 Sum_probs=21.9
Q ss_pred cHHhhhCCChHHHHHHHHHHHHcCCC
Q psy1455 193 QIKDILGDNPRTIDLLFKFLKDSNLL 218 (221)
Q Consensus 193 ~l~~~L~~~~~~~~~i~~Fl~~t~l~ 218 (221)
+++++||..-+.+..+++||++.|+.
T Consensus 15 ~~rd~lg~sRK~ai~lLE~lD~~g~T 40 (50)
T PF09107_consen 15 EFRDLLGLSRKYAIPLLEYLDREGIT 40 (50)
T ss_dssp HHHHHHTS-HHHHHHHHHHHHHTTSE
T ss_pred HHHHHHCccHHHHHHHHHHHhccCCE
Confidence 66788998889999999999999874
No 13
>PF04433 SWIRM: SWIRM domain; InterPro: IPR007526 The SWIRM domain is a small alpha-helical domain of about 85 amino acid residues found in eukaryotic chromosomal proteins. It is named after the proteins SWI3, RSC8 and MOIRA in which it was first recognised. This domain is predicted to mediate protein-protein interactions in the assembly of chromatin-protein complexes. The SWIRM domain can be linked to different domains, such as the ZZ-type zinc finger (IPR000433 from INTERPRO), the Myb DNA-binding domain (IPR001005 from INTERPRO), the HORMA domain (IPR003511 from INTERPRO), the amino-oxidase domain, the chromo domain (IPR000953 from INTERPRO), and the JAB1/PAD1 domain.; GO: 0005515 protein binding; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2L3D_A ....
Probab=34.29 E-value=60 Score=22.58 Aligned_cols=25 Identities=16% Similarity=0.394 Sum_probs=20.3
Q ss_pred HhhhC-CChHHHHHHHHHHHHcCCCC
Q psy1455 195 KDILG-DNPRTIDLLFKFLKDSNLLP 219 (221)
Q Consensus 195 ~~~L~-~~~~~~~~i~~Fl~~t~l~~ 219 (221)
...+. .+...+.+|++||..-|++|
T Consensus 60 ~~~i~~~d~~~~~ri~~FL~~~G~IN 85 (86)
T PF04433_consen 60 RKLIKGIDVNKIRRIYDFLERWGLIN 85 (86)
T ss_dssp HHHTTSSSHHHHHHHHHHHHHTTSSS
T ss_pred HHHccccCHHHHHHHHHHHHHcCccC
Confidence 34455 46788999999999999997
No 14
>PF04863 EGF_alliinase: Alliinase EGF-like domain; InterPro: IPR006947 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species. Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A.
Probab=27.80 E-value=13 Score=24.33 Aligned_cols=24 Identities=25% Similarity=0.223 Sum_probs=11.2
Q ss_pred HHhcccccccccccCCCCCCCChhh
Q psy1455 160 LRIGHTRLTHGFLMERTDPPQCEIR 184 (221)
Q Consensus 160 lrTGH~~~~h~~~~~~~~~p~C~cR 184 (221)
--.|||+. |+..+...-.|.|+|.
T Consensus 18 ~CSGHGr~-flDg~~~dG~p~CECn 41 (56)
T PF04863_consen 18 SCSGHGRA-FLDGLIADGSPVCECN 41 (56)
T ss_dssp --TTSEE---TTS-EETTEE--EE-
T ss_pred CcCCCCee-eeccccccCCcccccc
Confidence 45799988 5555544445999993
No 15
>PF01022 HTH_5: Bacterial regulatory protein, arsR family; InterPro: IPR001845 Bacterial transcription regulatory proteins that bind DNA via a helix-turn-helix (HTH) motif can be grouped into families on the basis of sequence similarities. One such group, termed arsR, includes several proteins that appear to dissociate from DNA in the presence of metal ions: arsR, which functions as a transcriptional repressor of an arsenic resistance operon; smtB from Synechococcus sp. (strain PCC 7942), which acts as a transcriptional repressor of the smtA gene that codes for a metallothionein; cadC, a protein required for cadmium-resistance; and hypothetical protein yqcJ from Bacillus subtilis. The HTH motif is thought to be located in the central part of these proteins []. The motif is characterised by a number of well-conserved residues: at its N-terminal extremity is a cysteine residue; a second Cys is found in arsR and cadC, but not in smtA; and at the C terminus lie one or two histidines. These residues may be involved in metal-binding (Zn in smtB; metal-oxyanions such as arsenite, antimonite and arsenate for arsR; and cadmium for cadC) []. It is believed that binding of a metal ion could induce a conformational change that would prevent the protein from binding DNA []. The crystal structure of the cyanobacterial smtB shows a fold of five alpha-helices (H) and a pair of antiparallel beta-strands (B) in the topology H1-H2-H3-H4-B1-B2-H5. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing as in other wHTH, such as the dtxR-type or the merR-type. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. Most arsR/smtB-like metalloregulators form homodimers []. The dimer interface is formed by helix 5 and an N-terminal part []. Two distinct metal-binding sites have been identified. The first site comprises cysteine thiolates located in the HTH in helix 3 and for some cases in the N terminus, called the alpha3(N) site []. The second metal-binding site is located in helix 5 (and C terminus) and is called the alpha5(C) site. The alpha3N site binds large thiophilic, toxic metals including Cd, Pb, and Bi, as in S. aureus cadC. ArsR lacks the N-terminal arm and its alpha3 site coordinates smaller thiophilic ions like As and Sb. The alpha5 site contains carboxylate and imidazole ligands and interacts preferentially with biologically required metal ions including Zn, Co, and Ni. ArsR-type metalloregulators contain one of these sites, both, or other potential metal-binding sites [, ]. Binding of metal ions to these sites leads to allosteric changes that can derepress the operator/promotor DNA. The metal-inducible operons contain one or two imperfect 12-2-12 inverted repeats, which can be recognised by multimeric arsR-type metalloregulators. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3CUO_A 1U2W_C 3F72_C 3F6V_A 3JTH_B 2P4W_B 1KU9_B 2LKP_B 1SMT_A 1R22_B ....
Probab=27.64 E-value=59 Score=19.81 Aligned_cols=28 Identities=25% Similarity=0.415 Sum_probs=23.0
Q ss_pred cHHhhhCCChHHHHHHHHHHHHcCCCCC
Q psy1455 193 QIKDILGDNPRTIDLLFKFLKDSNLLPK 220 (221)
Q Consensus 193 ~l~~~L~~~~~~~~~i~~Fl~~t~l~~~ 220 (221)
.+.+.|+-.+.++..=++.|.+.|+++|
T Consensus 20 el~~~l~~s~~~vs~hL~~L~~~glV~~ 47 (47)
T PF01022_consen 20 ELAEELGLSQSTVSHHLKKLREAGLVEK 47 (47)
T ss_dssp HHHHHHTS-HHHHHHHHHHHHHTTSEEE
T ss_pred hHHHhccccchHHHHHHHHHHHCcCeeC
Confidence 7778888777889999999999998764
No 16
>PF08097 Toxin_26: Conotoxin T-superfamily; InterPro: IPR012631 This family consists of the T-superfamily of conotoxins. Eight different T-superfamily peptides from five Conus species were identified. These peptides share a consensus signal sequence, and a conserved arrangement of cysteine residues. T-superfamily peptides were found expressed in venom ducts of all major feeding types of Conus, suggesting that the T-superfamily is a large and diverse group of peptides, widely distributed in the 500 different Conus species [].; GO: 0005576 extracellular region
Probab=26.76 E-value=24 Score=15.10 Aligned_cols=8 Identities=38% Similarity=0.800 Sum_probs=5.8
Q ss_pred hhhhhccc
Q psy1455 18 RPIIEYGA 25 (221)
Q Consensus 18 ~p~l~Yg~ 25 (221)
-|++.|++
T Consensus 3 cpvirycc 10 (11)
T PF08097_consen 3 CPVIRYCC 10 (11)
T ss_pred cchhheec
Confidence 47888875
No 17
>PF00325 Crp: Bacterial regulatory proteins, crp family; InterPro: IPR001808 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. This family groups together a range of proteins, including anr, crp, clp, cysR, fixK, flp, fnr, fnrN, hlyX and ntcA [, ]. Within this family, the HTH motif is situated towards the C terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2OZ6_A 1CGP_B 2GZW_C 1O3T_B 3ROU_A 2CGP_A 3RDI_A 1I5Z_A 3IYD_H 3FWE_B ....
Probab=24.46 E-value=1.1e+02 Score=17.59 Aligned_cols=26 Identities=31% Similarity=0.462 Sum_probs=22.0
Q ss_pred cHHhhhCCChHHHHHHHHHHHHcCCC
Q psy1455 193 QIKDILGDNPRTIDLLFKFLKDSNLL 218 (221)
Q Consensus 193 ~l~~~L~~~~~~~~~i~~Fl~~t~l~ 218 (221)
++.+.||--++....+++-|++.|++
T Consensus 7 diA~~lG~t~ETVSR~l~~l~~~glI 32 (32)
T PF00325_consen 7 DIADYLGLTRETVSRILKKLERQGLI 32 (32)
T ss_dssp HHHHHHTS-HHHHHHHHHHHHHTTSE
T ss_pred HHHHHhCCcHHHHHHHHHHHHHcCCC
Confidence 67788998889999999999999875
No 18
>PF04182 B-block_TFIIIC: B-block binding subunit of TFIIIC; InterPro: IPR007309 Yeast transcription factor IIIC (TFIIIC) is a multisubunit protein complex that interacts with two control elements of class III promoters called the A and B blocks. This family represents the subunit within TFIIIC involved in B-block binding []. Although defined as a yeast protein, it is also found in a number of other organisms.
Probab=20.19 E-value=99 Score=20.98 Aligned_cols=28 Identities=32% Similarity=0.519 Sum_probs=25.1
Q ss_pred cHHhhhCCChHHHHHHHHHHHHcCCCCC
Q psy1455 193 QIKDILGDNPRTIDLLFKFLKDSNLLPK 220 (221)
Q Consensus 193 ~l~~~L~~~~~~~~~i~~Fl~~t~l~~~ 220 (221)
+|...++-||..+..+++.|.+-||+.|
T Consensus 23 ~L~~~~~~D~r~i~~~~k~L~~~gLI~k 50 (75)
T PF04182_consen 23 DLSKLLGIDPRSIFYRLKKLEKKGLIVK 50 (75)
T ss_pred HHHHHhCCCchHHHHHHHHHHHCCCEEE
Confidence 7778889899999999999999999865
Done!