RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1455
         (221 letters)



>d1mu2a1 c.55.3.1 (A:430-555) HIV RNase H (Domain of reverse
           transcriptase) {Human immunodeficiency virus type 2
           [TaxId: 11709]}
          Length = 126

 Score = 34.5 bits (78), Expect = 0.003
 Identities = 10/23 (43%), Positives = 15/23 (65%)

Query: 69  NVKIIWIPSHCGIAGNEEVDKAA 91
            + + W+P+H GI GN+EVD   
Sbjct: 100 AIYVAWVPAHKGIGGNQEVDHLV 122


>d1rila_ c.55.3.1 (A:) RNase H (RNase HI) {Thermus thermophilus
           [TaxId: 274]}
          Length = 147

 Score = 31.1 bits (69), Expect = 0.051
 Identities = 8/24 (33%), Positives = 13/24 (54%)

Query: 68  NNVKIIWIPSHCGIAGNEEVDKAA 91
           + V+  ++  H G   NE VD+ A
Sbjct: 114 HRVRFHFVKGHTGHPENERVDREA 137


>d1jl1a_ c.55.3.1 (A:) RNase H (RNase HI) {Escherichia coli [TaxId:
           562]}
          Length = 152

 Score = 30.0 bits (66), Expect = 0.12
 Identities = 8/24 (33%), Positives = 12/24 (50%)

Query: 68  NNVKIIWIPSHCGIAGNEEVDKAA 91
           + +K  W+  H G   NE  D+ A
Sbjct: 112 HQIKWEWVKGHAGHPENERADELA 135


>d1jh6a_ d.61.1.1 (A:) tRNA splicing product Appr>p cyclic
           nucleotide phosphodiesterase {Thale cress (Arabidopsis
           thaliana) [TaxId: 3702]}
          Length = 181

 Score = 28.3 bits (62), Expect = 0.58
 Identities = 8/87 (9%), Positives = 21/87 (24%)

Query: 57  SRIENLQVDAGNNVKIIWIPSHCGIAGNEEVDKAAQSFTNAQIYSLITPVDLKAFLKNEF 116
            R + L     +         H  +A +  +               +          +  
Sbjct: 21  PRFKKLMEALRSEFTGPRFVPHVTVAVSAYLTADEAKKMFESACDGLKAYTATVDRVSTG 80

Query: 117 KKKWQIWWDNIQPPNKIKEIKDTVKEW 143
              +Q  +  +Q   ++ E  +  K  
Sbjct: 81  TFFFQCVFLLLQTTPEVMEAGEHCKNH 107


>d1ea0a2 c.1.4.1 (A:423-1193) Alpha subunit of glutamate synthase,
           central and FMN domains {Azospirillum brasilense [TaxId:
           192]}
          Length = 771

 Score = 26.0 bits (57), Expect = 4.8
 Identities = 17/76 (22%), Positives = 30/76 (39%), Gaps = 14/76 (18%)

Query: 150 LRKEEIILS-RLRIGHTRLTHGFLMERTDPPQCEIRLKYN---LNNLQ---IKDILGDNP 202
           LR E  ++S + R+G+     G +++     Q    L+     L   +   ++D +GD  
Sbjct: 92  LR-ERRVMSLKTRLGN----LGNILDED-ETQTR-LLQLESPVLTTAEFRAMRDYMGDTA 144

Query: 203 RTIDLLFKFLKDSNLL 218
             ID  F        L
Sbjct: 145 AEIDATFPVDGGPEAL 160


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.137    0.426 

Gapped
Lambda     K      H
   0.267   0.0651    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 893,310
Number of extensions: 40407
Number of successful extensions: 103
Number of sequences better than 10.0: 1
Number of HSP's gapped: 103
Number of HSP's successfully gapped: 8
Length of query: 221
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 139
Effective length of database: 1,281,736
Effective search space: 178161304
Effective search space used: 178161304
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.6 bits)