BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14552
(290 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5RBI5|SF3B3_PONAB Splicing factor 3B subunit 3 OS=Pongo abelii GN=SF3B3 PE=2 SV=1
Length = 1217
Score = 295 bits (754), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 157/287 (54%), Positives = 193/287 (67%), Gaps = 44/287 (15%)
Query: 1 EFDAYIVVSFSNATLVLSIGETVEEVSGSGFYGTTPTLCCSAMGDNSIVQVYPDGIRHIG 60
EFDAYI+VSF NATLVLSIGETVEEV+ SGF GTTPTL CS +GD+++VQVYPDGIRHI
Sbjct: 469 EFDAYIIVSFVNATLVLSIGETVEEVTDSGFLGTTPTLSCSLLGDDALVQVYPDGIRHIR 528
Query: 61 AKNTTWKVSDKKESDKKKIVRCAVNQRQIVIALQGGRLIYFEMHPVSDKKESDKKKIVRC 120
A DK+ V++ K KK IV+C
Sbjct: 529 A-------------DKR----------------------------VNEWKTPGKKTIVKC 547
Query: 121 AVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQMESEVLCMALSNAPSGEQMSRFLA 180
AVNQRQ+VIAL GG L+YFEM P +G L+E +E +M ++V+CM+L+N P GEQ SRFLA
Sbjct: 548 AVNQRQVVIALTGGELVYFEMDP-SGQLNEYTERKEMSADVVCMSLANVPPGEQRSRFLA 606
Query: 181 VGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAGPVTLGNLY 240
VGL DNTVR+ISL P DCL+ ++Q LP ESL ++EMG ++ DE ++G LY
Sbjct: 607 VGLVDNTVRIISLDPSDCLQPLSMQALPAQPESLCIVEMGGTE--KQDELGERGSIGFLY 664
Query: 241 LYVGLQNGALLRMVVDQTSGDLSDNRMRYLGSRPVKLFKIRCQGNEA 287
L +GLQNG LLR V+D +GDLSD R RYLGSRPVKLF++R QG EA
Sbjct: 665 LNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRVRMQGQEA 711
>sp|Q15393|SF3B3_HUMAN Splicing factor 3B subunit 3 OS=Homo sapiens GN=SF3B3 PE=1 SV=4
Length = 1217
Score = 294 bits (753), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 157/287 (54%), Positives = 193/287 (67%), Gaps = 44/287 (15%)
Query: 1 EFDAYIVVSFSNATLVLSIGETVEEVSGSGFYGTTPTLCCSAMGDNSIVQVYPDGIRHIG 60
EFDAYI+VSF NATLVLSIGETVEEV+ SGF GTTPTL CS +GD+++VQVYPDGIRHI
Sbjct: 469 EFDAYIIVSFVNATLVLSIGETVEEVTDSGFLGTTPTLSCSLLGDDALVQVYPDGIRHIR 528
Query: 61 AKNTTWKVSDKKESDKKKIVRCAVNQRQIVIALQGGRLIYFEMHPVSDKKESDKKKIVRC 120
A DK+ V++ K KK IV+C
Sbjct: 529 A-------------DKR----------------------------VNEWKTPGKKTIVKC 547
Query: 121 AVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQMESEVLCMALSNAPSGEQMSRFLA 180
AVNQRQ+VIAL GG L+YFEM P +G L+E +E +M ++V+CM+L+N P GEQ SRFLA
Sbjct: 548 AVNQRQVVIALTGGELVYFEMDP-SGQLNEYTERKEMSADVVCMSLANVPPGEQRSRFLA 606
Query: 181 VGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAGPVTLGNLY 240
VGL DNTVR+ISL P DCL+ ++Q LP ESL ++EMG ++ DE ++G LY
Sbjct: 607 VGLVDNTVRIISLDPSDCLQPLSMQALPAQPESLCIVEMGGTE--KQDELGERGSIGFLY 664
Query: 241 LYVGLQNGALLRMVVDQTSGDLSDNRMRYLGSRPVKLFKIRCQGNEA 287
L +GLQNG LLR V+D +GDLSD R RYLGSRPVKLF++R QG EA
Sbjct: 665 LNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRVRMQGQEA 711
>sp|A0JN52|SF3B3_BOVIN Splicing factor 3B subunit 3 OS=Bos taurus GN=SF3B3 PE=2 SV=1
Length = 1217
Score = 294 bits (753), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 157/287 (54%), Positives = 193/287 (67%), Gaps = 44/287 (15%)
Query: 1 EFDAYIVVSFSNATLVLSIGETVEEVSGSGFYGTTPTLCCSAMGDNSIVQVYPDGIRHIG 60
EFDAYI+VSF NATLVLSIGETVEEV+ SGF GTTPTL CS +GD+++VQVYPDGIRHI
Sbjct: 469 EFDAYIIVSFVNATLVLSIGETVEEVTDSGFLGTTPTLSCSLLGDDALVQVYPDGIRHIR 528
Query: 61 AKNTTWKVSDKKESDKKKIVRCAVNQRQIVIALQGGRLIYFEMHPVSDKKESDKKKIVRC 120
A DK+ V++ K KK IV+C
Sbjct: 529 A-------------DKR----------------------------VNEWKTPGKKTIVKC 547
Query: 121 AVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQMESEVLCMALSNAPSGEQMSRFLA 180
AVNQRQ+VIAL GG L+YFEM P +G L+E +E +M ++V+CM+L+N P GEQ SRFLA
Sbjct: 548 AVNQRQVVIALTGGELVYFEMDP-SGQLNEYTERKEMSADVVCMSLANVPPGEQRSRFLA 606
Query: 181 VGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAGPVTLGNLY 240
VGL DNTVR+ISL P DCL+ ++Q LP ESL ++EMG ++ DE ++G LY
Sbjct: 607 VGLVDNTVRIISLDPSDCLQPLSMQALPAQPESLCIVEMGGTE--KQDELGERGSIGFLY 664
Query: 241 LYVGLQNGALLRMVVDQTSGDLSDNRMRYLGSRPVKLFKIRCQGNEA 287
L +GLQNG LLR V+D +GDLSD R RYLGSRPVKLF++R QG EA
Sbjct: 665 LNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRVRMQGQEA 711
>sp|Q921M3|SF3B3_MOUSE Splicing factor 3B subunit 3 OS=Mus musculus GN=Sf3b3 PE=2 SV=1
Length = 1217
Score = 294 bits (753), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 157/287 (54%), Positives = 193/287 (67%), Gaps = 44/287 (15%)
Query: 1 EFDAYIVVSFSNATLVLSIGETVEEVSGSGFYGTTPTLCCSAMGDNSIVQVYPDGIRHIG 60
EFDAYI+VSF NATLVLSIGETVEEV+ SGF GTTPTL CS +GD+++VQVYPDGIRHI
Sbjct: 469 EFDAYIIVSFVNATLVLSIGETVEEVTDSGFLGTTPTLSCSLLGDDALVQVYPDGIRHIR 528
Query: 61 AKNTTWKVSDKKESDKKKIVRCAVNQRQIVIALQGGRLIYFEMHPVSDKKESDKKKIVRC 120
A DK+ V++ K KK IV+C
Sbjct: 529 A-------------DKR----------------------------VNEWKTPGKKTIVKC 547
Query: 121 AVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQMESEVLCMALSNAPSGEQMSRFLA 180
AVNQRQ+VIAL GG L+YFEM P +G L+E +E +M ++V+CM+L+N P GEQ SRFLA
Sbjct: 548 AVNQRQVVIALTGGELVYFEMDP-SGQLNEYTERKEMSADVVCMSLANVPPGEQRSRFLA 606
Query: 181 VGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAGPVTLGNLY 240
VGL DNTVR+ISL P DCL+ ++Q LP ESL ++EMG ++ DE ++G LY
Sbjct: 607 VGLVDNTVRIISLDPSDCLQPLSMQALPAQPESLCIVEMGGTE--KQDELGERGSIGFLY 664
Query: 241 LYVGLQNGALLRMVVDQTSGDLSDNRMRYLGSRPVKLFKIRCQGNEA 287
L +GLQNG LLR V+D +GDLSD R RYLGSRPVKLF++R QG EA
Sbjct: 665 LNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRVRMQGQEA 711
>sp|Q1LVE8|SF3B3_DANRE Splicing factor 3B subunit 3 OS=Danio rerio GN=sf3b3 PE=2 SV=1
Length = 1217
Score = 293 bits (751), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 157/287 (54%), Positives = 192/287 (66%), Gaps = 44/287 (15%)
Query: 1 EFDAYIVVSFSNATLVLSIGETVEEVSGSGFYGTTPTLCCSAMGDNSIVQVYPDGIRHIG 60
EFDAYI+VSF NATLVLSIGETVEEV+ SGF GTTPTL CS +G++++VQVYPDGIRHI
Sbjct: 469 EFDAYIIVSFVNATLVLSIGETVEEVTDSGFLGTTPTLSCSLLGEDALVQVYPDGIRHIR 528
Query: 61 AKNTTWKVSDKKESDKKKIVRCAVNQRQIVIALQGGRLIYFEMHPVSDKKESDKKKIVRC 120
A DK+ V++ K KK I+RC
Sbjct: 529 A-------------DKR----------------------------VNEWKTPGKKTIIRC 547
Query: 121 AVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQMESEVLCMALSNAPSGEQMSRFLA 180
AVNQRQ+VIAL GG L+YFEM P +G L+E +E +M ++V+CM+L+N P GEQ SRFLA
Sbjct: 548 AVNQRQVVIALTGGELVYFEMDP-SGQLNEYTERKEMSADVVCMSLANVPPGEQRSRFLA 606
Query: 181 VGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAGPVTLGNLY 240
VGL DNTVR+ISL P DCL+ ++Q LP ESL ++EMG + DE T+G LY
Sbjct: 607 VGLVDNTVRIISLDPSDCLQPLSMQALPAQPESLCIVEMGGVE--KQDELGEKGTIGFLY 664
Query: 241 LYVGLQNGALLRMVVDQTSGDLSDNRMRYLGSRPVKLFKIRCQGNEA 287
L +GLQNG LLR V+D +GDLSD R RYLGSRPVKLF++R QG EA
Sbjct: 665 LNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRVRMQGQEA 711
>sp|Q4WLI5|RSE1_ASPFU Pre-mRNA-splicing factor rse1 OS=Neosartorya fumigata (strain ATCC
MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=rse1 PE=3
SV=1
Length = 1225
Score = 199 bits (506), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 111/287 (38%), Positives = 161/287 (56%), Gaps = 52/287 (18%)
Query: 1 EFDAYIVVSFSNATLVLSIGETVEEVSGSGFYGTTPTLCCSAMGDNSIVQVYPDGIRHIG 60
EFDAYI++SF+N TLVLSIGETVEEV+ +GF T PTL +G++S++QV+P GIRHI
Sbjct: 485 EFDAYIILSFANGTLVLSIGETVEEVTDTGFLSTAPTLAVQQLGEDSLIQVHPRGIRHI- 543
Query: 61 AKNTTWKVSDKKESDKKKIVRCAVNQRQIVIALQGGRLIYFEMHPVSDKKESDKKKIVRC 120
++D++ V++ + IV
Sbjct: 544 -------LADRR---------------------------------VNEWPAPQHRSIVAA 563
Query: 121 AVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQMESEVLCMALSNAPSGEQMSRFLA 180
A N+RQ+ +AL G ++YFEM + G L E E QM V C++L P G S FLA
Sbjct: 564 ATNERQVAVALSSGEIVYFEMDAD-GTLAEYDERRQMSGTVTCLSLGEVPEGRVRSSFLA 622
Query: 181 VGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAGPVTLGNLY 240
VG D+TVR++SL P L+ K++Q L +L ++ M +D +G TL Y
Sbjct: 623 VGCDDSTVRILSLDPDSTLENKSVQALTSAPSALNIMSM-------ADSSSGGTTL---Y 672
Query: 241 LYVGLQNGALLRMVVDQTSGDLSDNRMRYLGSRPVKLFKIRCQGNEA 287
L++GL +G LR V+D+ +G+LSD R R+LG++PVKLF++ +G A
Sbjct: 673 LHIGLYSGVYLRTVLDEVTGELSDTRTRFLGAKPVKLFRVSVKGQTA 719
>sp|Q5B1X8|RSE1_EMENI Pre-mRNA-splicing factor rse1 OS=Emericella nidulans (strain FGSC
A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=rse1
PE=3 SV=2
Length = 1209
Score = 192 bits (487), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 109/287 (37%), Positives = 158/287 (55%), Gaps = 52/287 (18%)
Query: 1 EFDAYIVVSFSNATLVLSIGETVEEVSGSGFYGTTPTLCCSAMGDNSIVQVYPDGIRHIG 60
EFDAYIV+SF+N TLVLSIGETVEEV+ +GF + PTL +G++S++Q++P GIRHI
Sbjct: 485 EFDAYIVLSFANGTLVLSIGETVEEVTDTGFLSSAPTLAVQQLGEDSLIQIHPRGIRHI- 543
Query: 61 AKNTTWKVSDKKESDKKKIVRCAVNQRQIVIALQGGRLIYFEMHPVSDKKESDKKKIVRC 120
++D++ V++ + IV
Sbjct: 544 -------LADRR---------------------------------VNEWPAPQHRSIVAA 563
Query: 121 AVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQMESEVLCMALSNAPSGEQMSRFLA 180
A N+RQ+ +AL G ++YFE+ + G L E E QM V C++L P G S FLA
Sbjct: 564 ATNERQVAVALSSGEIVYFELDAD-GSLAEYDERRQMSGTVTCLSLGEVPEGRVRSSFLA 622
Query: 181 VGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAGPVTLGNLY 240
VG D+TVR++SL P L+ K++Q L +L +I M +D +G T LY
Sbjct: 623 VGCDDSTVRILSLDPDTTLENKSVQALTAAPSALNIIAM-------ADSSSGGTT---LY 672
Query: 241 LYVGLQNGALLRMVVDQTSGDLSDNRMRYLGSRPVKLFKIRCQGNEA 287
L++GL +G LR +D+ +G+LSD R R+LGS+ VKLF++ G A
Sbjct: 673 LHIGLHSGVYLRTALDEVTGELSDTRTRFLGSKAVKLFQVSVTGQTA 719
>sp|Q52E49|RSE1_MAGO7 Pre-mRNA-splicing factor RSE1 OS=Magnaporthe oryzae (strain 70-15 /
ATCC MYA-4617 / FGSC 8958) GN=RSE1 PE=3 SV=2
Length = 1216
Score = 177 bits (450), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 105/283 (37%), Positives = 151/283 (53%), Gaps = 53/283 (18%)
Query: 1 EFDAYIVVSFSNATLVLSIGETVEEVSGSGFYGTTPTLCCSAMGDNSIVQVYPDGIRHIG 60
E+DAYIV+SF+N TLVLSIGETVEEVS +GF + PTL +GD+ +VQV+P GIRHI
Sbjct: 488 EYDAYIVLSFTNGTLVLSIGETVEEVSDTGFLSSVPTLAVQQLGDDGLVQVHPKGIRHI- 546
Query: 61 AKNTTWKVSDKKESDKKKIVRCAVNQRQIVIALQGGRLIYFEMHPVSDKKESDKKKIVRC 120
R V V++ + IV
Sbjct: 547 --------------------RNGV---------------------VNEWSSPQHRSIVAA 565
Query: 121 AVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQMESEVLCMALSNAPSGEQMSRFLA 180
A N+RQ+ +AL G ++YFEM + G L E E +M V ++L P G S +LA
Sbjct: 566 ATNERQVAVALSSGEIVYFEMDTD-GSLAEYDEKKEMFGTVTSLSLGEVPEGRLRSSYLA 624
Query: 181 VGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAGPVTLGNLY 240
VG D TVR++SL P+ L+ K++Q L +L ++ M D +G TL Y
Sbjct: 625 VGCDDCTVRILSLDPESTLESKSVQALTAAPSALSIMSM-------EDSSSGGTTL---Y 674
Query: 241 LYVGLQNGALLRMVVDQTSGDLSDNRMRYLGSRPVKLFKIRCQ 283
L++GL +G LR V+D+ +G+L+D R ++LG + V+LF++ Q
Sbjct: 675 LHIGLNSGVYLRTVLDEVTGELTDTRQKFLGPKAVRLFQVSVQ 717
>sp|Q7RYR4|RSE1_NEUCR Pre-mRNA-splicing factor rse-1 OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=rse-1 PE=3 SV=2
Length = 1209
Score = 176 bits (446), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 104/283 (36%), Positives = 150/283 (53%), Gaps = 54/283 (19%)
Query: 1 EFDAYIVVSFSNATLVLSIGETVEEVSGSGFYGTTPTLCCSAMGDNSIVQVYPDGIRHIG 60
++DAYIV+SF+N TLVLSIGETVEEVS SGF T PTL MG++ ++QV+P GIRHI
Sbjct: 488 QYDAYIVLSFTNGTLVLSIGETVEEVSDSGFLTTAPTLAVQQMGEDGLIQVHPKGIRHI- 546
Query: 61 AKNTTWKVSDKKESDKKKIVRCAVNQRQIVIALQGGRLIYFEMHPVSDKKESDKKKIVRC 120
+QG V++ + IV
Sbjct: 547 --------------------------------VQGR---------VNEWPAPQHRSIVAA 565
Query: 121 AVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQMESEVLCMALSNAPSGEQMSRFLA 180
N+ Q+VIAL G ++YFEM + G L E E +M V +++ P G + S FLA
Sbjct: 566 TANENQVVIALSSGEIVYFEMDSD-GSLAEYDEKKEMSGTVTSLSVGQVPEGLKRSSFLA 624
Query: 181 VGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAGPVTLGNLY 240
VG D TVR++SL P L+ K++Q L +L ++ M S S+ LY
Sbjct: 625 VGCDDCTVRILSLDPDSTLEMKSIQALTAAPSALSIMSMEDSFGGST-----------LY 673
Query: 241 LYVGLQNGALLRMVVDQTSGDLSDNRMRYLGSRPVKLFKIRCQ 283
L++GL +G LR V+D+ +G+L+D R ++LG +P +LF++ Q
Sbjct: 674 LHIGLHSGVYLRTVLDEVTGELTDTRQKFLGPKPTRLFQVSVQ 716
>sp|Q4PGM6|RSE1_USTMA Pre-mRNA-splicing factor RSE1 OS=Ustilago maydis (strain 521 / FGSC
9021) GN=RSE1 PE=3 SV=1
Length = 1221
Score = 171 bits (433), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 105/287 (36%), Positives = 154/287 (53%), Gaps = 45/287 (15%)
Query: 1 EFDAYIVVSFSNATLVLSIGETVEEVSGSGFYGTTPTLCCSAMGDNSIVQVYPDGIRHIG 60
E+D+YI++SF N TLVLSIGET+EEVS SGF ++ TL +G ++++QV+P GIRH+
Sbjct: 486 EYDSYIILSFVNGTLVLSIGETIEEVSDSGFLTSSSTLAVQQLGQDALLQVHPHGIRHV- 544
Query: 61 AKNTTWKVSDKKESDKKKIVRCAVNQRQIVIALQGGRLIYFEMHPVSDKKESDKKKIVRC 120
+V +N+ +L GR + IV
Sbjct: 545 ------------------LVDKQINE-WATPSLPNGR----------------QTTIVAT 569
Query: 121 AVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQMESEVLCMALSNAPSGEQMSRFLA 180
N+RQ+V+AL L+YFE+ + G L+E E M + VL M++ + P G Q + +LA
Sbjct: 570 CTNERQVVVALSSNELVYFELDMD-GQLNEYQERKAMGAGVLTMSMPDCPEGRQRTPYLA 628
Query: 181 VGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAGPVTLGNLY 240
VG D+TVR+ISL P L ++Q L A S+ M EM D T A +
Sbjct: 629 VGCDDSTVRIISLEPNSTLASISIQALTAPASSICMAEM--LDATIDRNHA------TTF 680
Query: 241 LYVGLQNGALLRMVVDQTSGDLSDNRMRYLGSRPVKLFKIRCQGNEA 287
+ +GLQNG LLR ++D +G L+D R R+LGS+ V+L + + G A
Sbjct: 681 VNIGLQNGVLLRTILDAVTGQLTDTRTRFLGSKAVRLIRTKVHGQAA 727
>sp|P0CR22|RSE1_CRYNJ Pre-mRNA-splicing factor RSE1 OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=RSE1 PE=3 SV=1
Length = 1217
Score = 166 bits (419), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 101/284 (35%), Positives = 142/284 (50%), Gaps = 50/284 (17%)
Query: 1 EFDAYIVVSFSNATLVLSIGETVEEVSGSGFYGTTPTLCCSAMGDNSIVQVYPDGIRHIG 60
E+D+YIV+SF N TLVLSIGET+EEV+ +GF + PTL +G+ ++QV+P G+RHI
Sbjct: 488 EYDSYIVLSFPNGTLVLSIGETIEEVNDTGFLSSGPTLAVQQLGNAGLLQVHPYGLRHIR 547
Query: 61 AKNTTWKVSDKKESDKKKIVRCAVNQRQIVIALQGGRLIYFEMHPVSDKKESDKKKIVRC 120
A + V + + IV
Sbjct: 548 AADR-----------------------------------------VDEWPAPPGQTIVAA 566
Query: 121 AVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQMESEVLCMALSNAPSGEQMSRFLA 180
N+RQ+VIAL L+YFE+ PE G L E E + C+ ++ P G + + FLA
Sbjct: 567 TTNRRQVVIALSTAELVYFELDPE-GSLSEYQEKKALPGNATCVTIAEVPEGRRRTSFLA 625
Query: 181 VGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAGPVTLGNLY 240
VG + TV +ISL P L +LQ L S+ + E+ TS D+ ++
Sbjct: 626 VGCDNQTVSIISLEPDSTLDTLSLQALTAPPTSICLAEIFD---TSIDK-----NRATMF 677
Query: 241 LYVGLQNGALLRMVVDQTSGDLSDNRMRYLGSRPVKLFKIRCQG 284
L +GL NG LLR VVD G LSD R+R+LG++P KL + QG
Sbjct: 678 LNIGLMNGVLLRTVVDPVDGSLSDTRLRFLGAKPPKLVRANVQG 721
>sp|P0CR23|RSE1_CRYNB Pre-mRNA-splicing factor RSE1 OS=Cryptococcus neoformans var.
neoformans serotype D (strain B-3501A) GN=RSE1 PE=3 SV=1
Length = 1217
Score = 166 bits (419), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 101/284 (35%), Positives = 142/284 (50%), Gaps = 50/284 (17%)
Query: 1 EFDAYIVVSFSNATLVLSIGETVEEVSGSGFYGTTPTLCCSAMGDNSIVQVYPDGIRHIG 60
E+D+YIV+SF N TLVLSIGET+EEV+ +GF + PTL +G+ ++QV+P G+RHI
Sbjct: 488 EYDSYIVLSFPNGTLVLSIGETIEEVNDTGFLSSGPTLAVQQLGNAGLLQVHPYGLRHIR 547
Query: 61 AKNTTWKVSDKKESDKKKIVRCAVNQRQIVIALQGGRLIYFEMHPVSDKKESDKKKIVRC 120
A + V + + IV
Sbjct: 548 AADR-----------------------------------------VDEWPAPPGQTIVAA 566
Query: 121 AVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQMESEVLCMALSNAPSGEQMSRFLA 180
N+RQ+VIAL L+YFE+ PE G L E E + C+ ++ P G + + FLA
Sbjct: 567 TTNRRQVVIALSTAELVYFELDPE-GSLSEYQEKKALPGNATCVTIAEVPEGRRRTSFLA 625
Query: 181 VGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAGPVTLGNLY 240
VG + TV +ISL P L +LQ L S+ + E+ TS D+ ++
Sbjct: 626 VGCDNQTVSIISLEPDSTLDTLSLQALTAPPTSICLAEIFD---TSIDK-----NRATMF 677
Query: 241 LYVGLQNGALLRMVVDQTSGDLSDNRMRYLGSRPVKLFKIRCQG 284
L +GL NG LLR VVD G LSD R+R+LG++P KL + QG
Sbjct: 678 LNIGLMNGVLLRTVVDPVDGSLSDTRLRFLGAKPPKLVRANVQG 721
>sp|Q9UTT2|RSE1_SCHPO Pre-mRNA-splicing factor prp12 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=prp12 PE=1 SV=1
Length = 1206
Score = 159 bits (401), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 102/283 (36%), Positives = 142/283 (50%), Gaps = 59/283 (20%)
Query: 2 FDAYIVVSFSNATLVLSIGETVEEVSGSGFYGTTPTLCCSAMGDNSIVQVYPDGIRHIGA 61
+D+YI++SF+N TLVLSIGETVEE+S SGF + TL MG +S+VQ++P GIR+I A
Sbjct: 495 YDSYIILSFTNGTLVLSIGETVEEISDSGFLSSVSTLNARQMGRDSLVQIHPKGIRYIRA 554
Query: 62 KNTT--WKVSDKKESDKKKIVRCAVNQRQIVIALQGGRLIYFEMHPVSDKKESDKKKIVR 119
T WK+ +Y +V+
Sbjct: 555 NKQTSEWKLPQD---------------------------VY----------------VVQ 571
Query: 120 CAVNQRQIVIALQGGRLIYFEMHP--ETGILDECSETIQMESEVLCMALSNAPSGEQMSR 177
A+N QIV+AL G L+YFEM E G L+E E + + V +AL G + S
Sbjct: 572 SAINDMQIVVALSNGELVYFEMSDDVEGGQLNEYQERKTLTANVTSLALGPVQEGSRRSN 631
Query: 178 FLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAGPVTLG 237
F+ + D TVR++SL L+ ++Q L A SL +I M + +
Sbjct: 632 FMCLACDDATVRVLSLDLYTTLENLSVQALSSPANSLCIIPMNVNG------------VS 679
Query: 238 NLYLYVGLQNGALLRMVVDQTSGDLSDNRMRYLGSRPVKLFKI 280
LYL++GL NG LR V+D TSG L D R R+LG R VK++ I
Sbjct: 680 TLYLHIGLMNGVYLRTVIDVTSGQLLDTRTRFLGPRAVKIYPI 722
>sp|Q54SA7|SF3B3_DICDI Probable splicing factor 3B subunit 3 OS=Dictyostelium discoideum
GN=sf3b3 PE=3 SV=1
Length = 1256
Score = 149 bits (377), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 97/305 (31%), Positives = 157/305 (51%), Gaps = 63/305 (20%)
Query: 3 DAYIVVSFSNATLVLSIGETVEEVSGSGFYGTTPTLCCSAMGDNSIVQVYPDGIRHIGAK 62
D YIVVSF T VLS+G+T++E SG TT TL +MGD++I+QV+P G RHI
Sbjct: 488 DKYIVVSFVGTTSVLSVGDTIQENHESGILETTTTLLVKSMGDDAIIQVFPTGFRHI--- 544
Query: 63 NTTWKVSDKKESDKKKIVRCAVNQRQIVIALQGGRLIYFEMHPVSDKKESDKKKIVRCAV 122
+SD + +++ + +K IVR +
Sbjct: 545 ----------KSDLR----------------------------INEWRAPGRKTIVRASA 566
Query: 123 NQRQIVIALQGGRLIYFEMHPETGILDECSETIQMESEVLCMALSNAPSGEQMSRFLAVG 182
NQ Q+ IAL GG +IYFE+ + +++ + + ++ C+ +S P G M+RF+AV
Sbjct: 567 NQSQLAIALSGGEIIYFELDQASNLIEIIKK--DLRRDIACIEISPIPKGRNMARFIAVS 624
Query: 183 LADNTVRLISLAPQDCLKQKNLQGLPDL-AESLVMIEMGASD------------------ 223
+ +R++SL +CL Q ++ + ESL +IEM ++
Sbjct: 625 DWEGPIRVLSLDRDNCLGQVSMLDTDKVYIESLSIIEMQLNEMGIETKKSQSQTGQTTTT 684
Query: 224 -PTSSDEPAGPVTLGNLYLYVGLQNGALLRMVVDQTSGDLSDNRMRYLGSRPVKLFKIRC 282
++S + + G+L+L+VGL+NG + R +D +G+LSD R R LG +PVKLFK++
Sbjct: 685 TTSTSSASSSVTSGGSLFLFVGLKNGVVKRATLDSVTGELSDIRTRLLGRKPVKLFKVKV 744
Query: 283 QGNEA 287
+G+ A
Sbjct: 745 RGSNA 749
>sp|Q6BYK1|RSE1_DEBHA Pre-mRNA-splicing factor RSE1 OS=Debaryomyces hansenii (strain ATCC
36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=RSE1 PE=3 SV=2
Length = 1256
Score = 124 bits (311), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 86/280 (30%), Positives = 142/280 (50%), Gaps = 55/280 (19%)
Query: 3 DAYIVVS--FSNATLVLSIGETVEEVSGSGFYGTTPTLCCSAMGDNSIVQVYPDGIRHIG 60
D Y+V+S S+ TLVLSIGE VEEV+ S F PT+ +G +S+VQ+Y +GIRHI
Sbjct: 483 DEYLVISSTLSSQTLVLSIGEVVEEVNDSQFVTNEPTINVQQVGKSSVVQIYSNGIRHI- 541
Query: 61 AKNTTWKVSDKKESDKKKIVRCAVNQRQIVIALQGGRLIYFEMHPVSDKKESDKKKIVRC 120
K + + ++ +KK Y + +P + I++
Sbjct: 542 ------KHTMRNDTIEKK---------------------YTDWYPPA------GISIIQA 568
Query: 121 AVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQMESEVLCMALSNAPSGEQMSR--- 177
+ N Q++I L + YFE+ P L E E ++M + ++ S ++ R
Sbjct: 569 STNNEQVIIGLSNREICYFEIDPHDDQLVEYQERLEMSGGSISALAISSSSISKLQRKSS 628
Query: 178 FLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAGPVTLG 237
+ VG +D T++ ISL P +CL+ LQ L + S+ M+ G S TS
Sbjct: 629 YAIVGCSDETIQAISLKPHNCLEIVTLQALSANSSSIAMVPHGYS--TS----------- 675
Query: 238 NLYLYVGLQNGALLRMVVDQTSGDLSDNRMRYLGSRPVKL 277
+++G++NG +R+ +D+ +G LSD R+++LGS+PV+L
Sbjct: 676 ---VHIGMENGLYVRVTIDEITGKLSDTRIQFLGSKPVQL 712
>sp|Q5A7S5|RSE1_CANAL Pre-mRNA-splicing factor RSE1 OS=Candida albicans (strain SC5314 /
ATCC MYA-2876) GN=RSE1 PE=3 SV=1
Length = 1219
Score = 110 bits (274), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 78/281 (27%), Positives = 135/281 (48%), Gaps = 57/281 (20%)
Query: 3 DAYIVVS--FSNATLVLSIGETVEEVSGSGFYGTTPTLCCSAMGDNSIVQVYPDGIRHIG 60
D Y+V+S S+ TLVLSIGE VE+V S F PT+ +G S+VQ+Y +GI+H+
Sbjct: 497 DEYLVISSSLSSKTLVLSIGEVVEDVEDSEFVLDQPTIAVQQVGIASVVQIYSNGIKHVR 556
Query: 61 AKNTTWKVSDKKESDKKKIVRCAVNQRQIVIALQGGRLIYFEMHPVSDKKESDKKKIVRC 120
N K +D +F ++ I
Sbjct: 557 TVNGNKKTTD-----------------------------WFPPAGIT---------ITHA 578
Query: 121 AVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQMESEVLCMALSNAPSGEQMSRFLA 180
N +Q++IAL ++YFE+ L E + +++ + + MA+ S + S F
Sbjct: 579 TTNNQQVLIALSNLSVVYFEIDATDDQLIEYQDRLEIATTITAMAIQENIS--EKSPFAI 636
Query: 181 VGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAGPVTLGNLY 240
+G +D T++++SL +CL+ K+LQ L S + +G T +
Sbjct: 637 IGCSDETIQVVSLQEHNCLEIKSLQALS-----------ANSSSLKMLKSSGKET----H 681
Query: 241 LYVGLQNGALLRMVVDQTSGDLSDNRMRYLGSRPVKLFKIR 281
+++G++NG R+ +D +G+LS++R++Y+GS+PV L I+
Sbjct: 682 VHIGMENGVYARIKIDTINGNLSNSRVKYIGSKPVSLSVIK 722
>sp|Q6CAH5|RSE1_YARLI Pre-mRNA-splicing factor RSE1 OS=Yarrowia lipolytica (strain CLIB
122 / E 150) GN=RSE1 PE=3 SV=1
Length = 1143
Score = 98.2 bits (243), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 77/285 (27%), Positives = 130/285 (45%), Gaps = 54/285 (18%)
Query: 3 DAYIVVSFSNATLVLSIGETVEEVSGSGFYGTTPTLCCSAMGDNSIVQVYPDGIRHIGAK 62
D YIV+S++NATLVL IG++V E + SG PTL C ++G +S VQV DG+ I
Sbjct: 469 DKYIVLSYANATLVLEIGDSVVETTSSGLTLDKPTLHCGSVG-SSYVQVMTDGMNVI--- 524
Query: 63 NTTWKVSDKKESDKKKIVRCAVNQRQIVIALQGGRLIYFEMHPVSDKKESDKKKIVRCAV 122
+S + S+ + Q++ A +
Sbjct: 525 ----PMSREGSSESLPATKWTAPSGQVICA----------------------------SS 552
Query: 123 NQRQIVIALQGGRLIYFEMHPETGILDECSETIQMESEVLCMALSNAPSGEQMSRFLAVG 182
+ Q+V+ L L YFE P + L ++ S +A++ P+G S F+AV
Sbjct: 553 SSHQVVLGLTS-SLFYFEDTPGSE-LSAYDGAYELSSPPTAVAVAPVPAGRVRSPFVAVA 610
Query: 183 LADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAGPVTLGNLYLY 242
D TVR++S+ P+ + +QGL A SL ++ +G LYL+
Sbjct: 611 TDDETVRIVSVDPESMFETVAVQGLMATASSLALLSVGQV----------------LYLH 654
Query: 243 VGLQNGALLRMVVDQTSGDLSDNRMRYLGSRPVKLFKIRCQGNEA 287
+GL NG +R+ +D +G++ + +++G + + + C G E+
Sbjct: 655 MGLANGVYVRVELDPLTGEIVGSWSKFVGLGRLSVVPVTCGGEES 699
>sp|Q6P6Z0|DDB1_XENLA DNA damage-binding protein 1 OS=Xenopus laevis GN=ddb1 PE=2 SV=1
Length = 1140
Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 74/282 (26%), Positives = 122/282 (43%), Gaps = 64/282 (22%)
Query: 3 DAYIVVSFSNATLVLSI-GETVEEVSGSGFYGTTPTLCCSAMGDNSIVQVYPDGIRHIGA 61
D +V+SF T VL++ GE VEE +GF T C + ++Q+ +R +
Sbjct: 422 DDTLVLSFVGQTRVLTLTGEEVEETDLAGFVDDQQTFFCGNVAHQQLIQITSASVRLVSQ 481
Query: 62 KNTTWKVSDKKESDKKKIVRCAVNQRQIVIALQGGRLIYFEMHPVSDKKESDKKKIVRCA 121
N + +V S+ KE +K+ C+
Sbjct: 482 -----------------------NPQNLV----------------SEWKEPQGRKVSVCS 502
Query: 122 VNQRQIVIALQGGRLIYF-EMHPETGILDECSETIQMESEVLCMALSNAPSGEQMSRFLA 180
N RQ+++A+ GR++Y+ E+HP G L + S T +ME EV C+ ++ + +S A
Sbjct: 503 CNSRQVLLAV--GRVLYYLEIHP--GELRQTSCT-EMEHEVACLDVTPLGGNDTLSSLCA 557
Query: 181 VGL-ADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAGPVTLGNL 239
+GL D + R++SL P L K + G + S++M +S
Sbjct: 558 IGLWTDISARILSL-PGFQLLHKEMLGGEIIPRSILMTSFESSH---------------- 600
Query: 240 YLYVGLQNGALLRMVVDQTSGDLSDNRMRYLGSRPVKLFKIR 281
YL L +GAL ++ +G LSD + LG++P L R
Sbjct: 601 YLLCALGDGALFYFSLNTDTGLLSDRKKVTLGTQPTVLRTFR 642
>sp|Q753D4|RSE1_ASHGO Pre-mRNA-splicing factor RSE1 OS=Ashbya gossypii (strain ATCC 10895
/ CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=RSE1 PE=3
SV=2
Length = 1288
Score = 71.6 bits (174), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 68/283 (24%), Positives = 126/283 (44%), Gaps = 64/283 (22%)
Query: 2 FDAYIVVSFSNATLVLSIGE-TVEEV---SGSGFYGTTPTLCCSAMGDNSIVQVYPDGIR 57
F + ++ +T++L I TVEE+ T+ + MG SI+QV + +
Sbjct: 486 FHKLLFIALQESTMILKIAAGTVEELELPHNPFVIAQDKTVLIAHMGGQSIIQVTENKMV 545
Query: 58 HIGAKNTTWKVSDKKESDKKKIVRCAVNQRQIVIALQGGRLIYFEMHPVSDKKESDKKKI 117
HI + ++ ES + K+ E P + I
Sbjct: 546 HI--------IENRDESYESKL----------------------EWFPPA------GICI 569
Query: 118 VRCAVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQMESEVLCMALSNAPSGEQMSR 177
++ + N Q+++AL ++YFE+ L+E + I++E + +A+ N S
Sbjct: 570 LKASSNSTQLILALSNNEVVYFEIGSNES-LNELQDRIEVEERITALAIGNG----NRSD 624
Query: 178 FLAVGLADNTVRLISLAPQD---CLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAGPV 234
++ + D+TV++ SL QD L+ ++Q L A SL + G
Sbjct: 625 YMIIASVDSTVKVYSLKVQDQANFLEVVSMQVLVSPASSLQLASSG-------------- 670
Query: 235 TLGNLYLYVGLQNGALLRMVVDQTSGDLSDNRMRYLGSRPVKL 277
G+L L++GL +G +R +D+ +G+L D R +YLG++PV++
Sbjct: 671 --GSLCLHIGLDSGVYVRSKLDRNTGELFDVRTKYLGTKPVEI 711
>sp|A1A4K3|DDB1_BOVIN DNA damage-binding protein 1 OS=Bos taurus GN=DDB1 PE=2 SV=1
Length = 1140
Score = 65.5 bits (158), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 72/282 (25%), Positives = 111/282 (39%), Gaps = 60/282 (21%)
Query: 1 EFDAYIVVSFSNATLVLSI-GETVEEVSGSGFYGTTPTLCCSAMGDNSIVQVYPDGIRHI 59
E D +V+SF T VL + GE VEE GF T C + ++Q+ +R +
Sbjct: 420 ETDDTLVLSFVGQTRVLMLNGEEVEETELMGFVDDQQTFFCGNVAHQQLIQITSASVRLV 479
Query: 60 GAKNTTWKVSDKKESDKKKIVRCAVNQRQIVIALQGGRLIYFEMHPVSDKKESDKKKIVR 119
S + K + VS+ KE K I
Sbjct: 480 --------------SQEPKAL-------------------------VSEWKEPQGKNISV 500
Query: 120 CAVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQMESEVLCMALSNAPSGEQMSRFL 179
+ N Q+V+A+ G L Y ++HP+ L + S T +ME EV C+ ++ MS
Sbjct: 501 ASCNSSQVVVAV-GRALYYLQIHPQE--LRQISHT-EMEHEVACLDITPLGDSNGMSPLC 556
Query: 180 AVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAGPVTLGNL 239
A+GL + I+ P L K + G + S++M +S
Sbjct: 557 AIGLWTDISARIAKLPSFELLHKEMLGGEIIPRSILMTTFESSH---------------- 600
Query: 240 YLYVGLQNGALLRMVVDQTSGDLSDNRMRYLGSRPVKLFKIR 281
YL L +GAL ++ +G LSD + LG++P L R
Sbjct: 601 YLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFR 642
>sp|Q805F9|DDB1_CHICK DNA damage-binding protein 1 OS=Gallus gallus GN=DDB1 PE=2 SV=1
Length = 1140
Score = 65.5 bits (158), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 73/283 (25%), Positives = 112/283 (39%), Gaps = 62/283 (21%)
Query: 1 EFDAYIVVSFSNATLVLSI-GETVEEVSGSGFYGTTPTLCCSAMGDNSIVQVYPDGIRHI 59
E D +V+SF T VL + GE VEE +GF T C + ++Q+ +R +
Sbjct: 420 EMDNMLVLSFVGQTRVLMLNGEEVEETELTGFVDDQQTFFCGNVAHQQLIQITSASVRLV 479
Query: 60 GAKNTTWKVSDKKESDKKKIVRCAVNQRQIVIALQGGRLIYFEMHPVSDKKESDKKKIVR 119
S + K + VS+ KE + K I
Sbjct: 480 --------------SQEPKAL-------------------------VSEWKEPNGKNISV 500
Query: 120 CAVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQMESEVLCMALSNAPSGEQMSRFL 179
+ N Q+V+A+ G L Y E+ P+ C+E ME EV C+ ++ MS
Sbjct: 501 ASCNSNQVVVAV-GRALYYLEIRPQELRQINCTE---MEHEVACLDITPLGDTNGMSPLC 556
Query: 180 AVGL-ADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAGPVTLGN 238
A+GL D + R++ L P L K + G + S++M +S
Sbjct: 557 AIGLWTDISARILKL-PSFELLHKEMLGGEIIPRSILMTTFESSH--------------- 600
Query: 239 LYLYVGLQNGALLRMVVDQTSGDLSDNRMRYLGSRPVKLFKIR 281
YL L +GAL + +G LSD + LG++P L R
Sbjct: 601 -YLLCALGDGALFYFGLSLETGLLSDRKKVTLGTQPTVLRTFR 642
>sp|Q5R649|DDB1_PONAB DNA damage-binding protein 1 OS=Pongo abelii GN=DDB1 PE=2 SV=1
Length = 1140
Score = 64.7 bits (156), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 73/283 (25%), Positives = 114/283 (40%), Gaps = 62/283 (21%)
Query: 1 EFDAYIVVSFSNATLVLSI-GETVEEVSGSGFYGTTPTLCCSAMGDNSIVQVYPDGIRHI 59
E D +V+SF T VL + GE VEE GF T C + ++Q+ +R +
Sbjct: 420 ETDDTLVLSFVGQTRVLMLNGEEVEETELMGFVDDQQTFFCGNVAHQQLIQITSASVRLV 479
Query: 60 GAKNTTWKVSDKKESDKKKIVRCAVNQRQIVIALQGGRLIYFEMHPVSDKKESDKKKIVR 119
S + K + VS+ KE K I
Sbjct: 480 --------------SQEPKAL-------------------------VSEWKEPQAKNISV 500
Query: 120 CAVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQMESEVLCMALSNAPSGEQMSRFL 179
+ N Q+V+A+ G L Y ++HP+ L + S T +ME EV C+ ++ +S
Sbjct: 501 ASCNSSQVVVAV-GRALYYLQIHPQE--LRQISHT-EMEHEVACLDITPLGDSNGLSPLC 556
Query: 180 AVGL-ADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAGPVTLGN 238
A+GL D + R++ L P L K + G + S++M +S
Sbjct: 557 AIGLWTDISARILKL-PSFELLHKEMLGGEIIPRSILMTTFESSH--------------- 600
Query: 239 LYLYVGLQNGALLRMVVDQTSGDLSDNRMRYLGSRPVKLFKIR 281
YL L +GAL ++ +G LSD + LG++P L R
Sbjct: 601 -YLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFR 642
>sp|P33194|DDB1_CHLAE DNA damage-binding protein 1 OS=Chlorocebus aethiops GN=DDB1 PE=1
SV=1
Length = 1140
Score = 64.7 bits (156), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 73/283 (25%), Positives = 114/283 (40%), Gaps = 62/283 (21%)
Query: 1 EFDAYIVVSFSNATLVLSI-GETVEEVSGSGFYGTTPTLCCSAMGDNSIVQVYPDGIRHI 59
E D +V+SF T VL + GE VEE GF T C + ++Q+ +R +
Sbjct: 420 ETDDTLVLSFVGQTRVLMLNGEEVEETELMGFVDDQQTFFCGNVAHQQLIQITSASVRLV 479
Query: 60 GAKNTTWKVSDKKESDKKKIVRCAVNQRQIVIALQGGRLIYFEMHPVSDKKESDKKKIVR 119
S + K + VS+ KE K I
Sbjct: 480 --------------SQEPKAL-------------------------VSEWKEPQAKNISV 500
Query: 120 CAVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQMESEVLCMALSNAPSGEQMSRFL 179
+ N Q+V+A+ G L Y ++HP+ L + S T +ME EV C+ ++ +S
Sbjct: 501 ASCNSSQVVVAV-GRALYYLQIHPQE--LRQISHT-EMEHEVACLDITPLGDSNGLSPLC 556
Query: 180 AVGL-ADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAGPVTLGN 238
A+GL D + R++ L P L K + G + S++M +S
Sbjct: 557 AIGLWTDISARILKL-PSFELLHKEMLGGEIIPRSILMTTFESSH--------------- 600
Query: 239 LYLYVGLQNGALLRMVVDQTSGDLSDNRMRYLGSRPVKLFKIR 281
YL L +GAL ++ +G LSD + LG++P L R
Sbjct: 601 -YLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFR 642
>sp|Q16531|DDB1_HUMAN DNA damage-binding protein 1 OS=Homo sapiens GN=DDB1 PE=1 SV=1
Length = 1140
Score = 64.7 bits (156), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 73/283 (25%), Positives = 114/283 (40%), Gaps = 62/283 (21%)
Query: 1 EFDAYIVVSFSNATLVLSI-GETVEEVSGSGFYGTTPTLCCSAMGDNSIVQVYPDGIRHI 59
E D +V+SF T VL + GE VEE GF T C + ++Q+ +R +
Sbjct: 420 ETDDTLVLSFVGQTRVLMLNGEEVEETELMGFVDDQQTFFCGNVAHQQLIQITSASVRLV 479
Query: 60 GAKNTTWKVSDKKESDKKKIVRCAVNQRQIVIALQGGRLIYFEMHPVSDKKESDKKKIVR 119
S + K + VS+ KE K I
Sbjct: 480 --------------SQEPKAL-------------------------VSEWKEPQAKNISV 500
Query: 120 CAVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQMESEVLCMALSNAPSGEQMSRFL 179
+ N Q+V+A+ G L Y ++HP+ L + S T +ME EV C+ ++ +S
Sbjct: 501 ASCNSSQVVVAV-GRALYYLQIHPQE--LRQISHT-EMEHEVACLDITPLGDSNGLSPLC 556
Query: 180 AVGL-ADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAGPVTLGN 238
A+GL D + R++ L P L K + G + S++M +S
Sbjct: 557 AIGLWTDISARILKL-PSFELLHKEMLGGEIIPRSILMTTFESSH--------------- 600
Query: 239 LYLYVGLQNGALLRMVVDQTSGDLSDNRMRYLGSRPVKLFKIR 281
YL L +GAL ++ +G LSD + LG++P L R
Sbjct: 601 -YLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFR 642
>sp|Q3U1J4|DDB1_MOUSE DNA damage-binding protein 1 OS=Mus musculus GN=Ddb1 PE=1 SV=2
Length = 1140
Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 73/283 (25%), Positives = 114/283 (40%), Gaps = 62/283 (21%)
Query: 1 EFDAYIVVSFSNATLVLSI-GETVEEVSGSGFYGTTPTLCCSAMGDNSIVQVYPDGIRHI 59
E D +V+SF T VL + GE VEE GF T C + ++Q+ +R +
Sbjct: 420 ETDDTLVLSFVGQTRVLMLNGEEVEETELMGFVDDQQTFFCGNVAHQQLIQITSASVRLV 479
Query: 60 GAKNTTWKVSDKKESDKKKIVRCAVNQRQIVIALQGGRLIYFEMHPVSDKKESDKKKIVR 119
S + K + VS+ KE K I
Sbjct: 480 --------------SQEPKAL-------------------------VSEWKEPQGKNISV 500
Query: 120 CAVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQMESEVLCMALSNAPSGEQMSRFL 179
+ N Q+V+A+ G L Y ++HP+ L + S T +ME EV C+ ++ +S
Sbjct: 501 ASCNSSQVVVAV-GRALYYLQIHPQE--LRQISHT-EMEHEVACLDITPLGDSNGLSPLC 556
Query: 180 AVGL-ADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAGPVTLGN 238
A+GL D + R++ L P L K + G + S++M +S
Sbjct: 557 AIGLWTDISARILKL-PSFELLHKEMLGGEIIPRSILMTTFESSH--------------- 600
Query: 239 LYLYVGLQNGALLRMVVDQTSGDLSDNRMRYLGSRPVKLFKIR 281
YL L +GAL ++ +G LSD + LG++P L R
Sbjct: 601 -YLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFR 642
>sp|Q9ESW0|DDB1_RAT DNA damage-binding protein 1 OS=Rattus norvegicus GN=Ddb1 PE=2 SV=1
Length = 1140
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 73/283 (25%), Positives = 114/283 (40%), Gaps = 62/283 (21%)
Query: 1 EFDAYIVVSFSNATLVLSI-GETVEEVSGSGFYGTTPTLCCSAMGDNSIVQVYPDGIRHI 59
E D +V+SF T VL + GE VEE GF T C + ++Q+ +R +
Sbjct: 420 ETDDTLVLSFVGQTRVLMLNGEEVEETELMGFVDDQQTFFCGNVAHQQLIQITSASVRLV 479
Query: 60 GAKNTTWKVSDKKESDKKKIVRCAVNQRQIVIALQGGRLIYFEMHPVSDKKESDKKKIVR 119
S + K + VS+ KE K I
Sbjct: 480 --------------SQEPKAL-------------------------VSEWKEPRAKNISV 500
Query: 120 CAVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQMESEVLCMALSNAPSGEQMSRFL 179
+ N Q+V+A+ G L Y ++HP+ L + S T +ME EV C+ ++ +S
Sbjct: 501 ASCNSSQVVVAV-GRALYYLQIHPQE--LRQISHT-EMEHEVACLDVTPLGDSNGLSPLC 556
Query: 180 AVGL-ADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAGPVTLGN 238
A+GL D + R++ L P L K + G + S++M +S
Sbjct: 557 AIGLWTDISARILKL-PSFELLHKEMLGGEIIPRSILMTTFESSH--------------- 600
Query: 239 LYLYVGLQNGALLRMVVDQTSGDLSDNRMRYLGSRPVKLFKIR 281
YL L +GAL ++ +G LSD + LG++P L R
Sbjct: 601 -YLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFR 642
>sp|Q9M0V3|DDB1A_ARATH DNA damage-binding protein 1a OS=Arabidopsis thaliana GN=DDB1A PE=1
SV=1
Length = 1088
Score = 58.9 bits (141), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 70/279 (25%), Positives = 113/279 (40%), Gaps = 62/279 (22%)
Query: 2 FDAYIVVSFSNAT--LVLSIGETVEEVSGSGFYGTTPTLCCSAMGDNSIVQVYPDGIRHI 59
FD ++VVSF + T L +++ + +EE GF TL C N +VQV + +R +
Sbjct: 413 FDTFLVVSFISETRILAMNLEDELEETEIEGFLSQVQTLFCHDAVYNQLVQVTSNSVRLV 472
Query: 60 GAKNTTWKVSDKKESDKKKIVRCAVNQRQIVIALQGGRLIYFEMHPVSDKKESDKKKIVR 119
+ TT ++ D+ + V A
Sbjct: 473 SS--TTRELRDEWHAPAGFTVNVA------------------------------------ 494
Query: 120 CAVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQMESEVLCMALSNAPSGEQMSRFL 179
N Q+++A GG L+Y E+ G L E + +E EV C+ ++ S+
Sbjct: 495 -TANASQVLLATGGGHLVYLEIG--DGKLTEVQHAL-LEYEVSCLDINPIGDNPNYSQLA 550
Query: 180 AVGL-ADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAGPVTLGN 238
AVG+ D +VR+ SL P+ L K G + S+++ G
Sbjct: 551 AVGMWTDISVRIFSL-PELTLITKEQLGGEIIPRSVLLCAFE----------------GI 593
Query: 239 LYLYVGLQNGALLRMVVDQTSGDLSDNRMRYLGSRPVKL 277
YL L +G LL +D T+G L D + LG++P+ L
Sbjct: 594 SYLLCALGDGHLLNFQMDTTTGQLKDRKKVSLGTQPITL 632
>sp|Q04693|RSE1_YEAST Pre-mRNA-splicing factor RSE1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RSE1 PE=1 SV=1
Length = 1361
Score = 58.9 bits (141), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 70/291 (24%), Positives = 123/291 (42%), Gaps = 68/291 (23%)
Query: 3 DAYIVVSFSNATLVLSI-GETVEEVSG-----SGF-YGTTPTLCCSAMGDNSIVQVYPDG 55
+ + ++F T++L I E++EE++ S F T+ MG +SI+QV
Sbjct: 547 NTLLFITFPKKTMILQIDNESMEELTPDEATRSAFKLSQDTTIHTCLMGSHSIIQVCTAE 606
Query: 56 IRHIGAKNTTWKVSDKKESDKKKIVR--CAVNQR-QIVIALQGGRLIYFEMHPVSDKKES 112
+RHI + + S+K +R CA + + Q++I+L L+YF++ SD
Sbjct: 607 LRHIVPTGKS-RYSNKLTWVPPAGIRIVCATSSKTQLIISLSNYELVYFKIDVSSDS--- 662
Query: 113 DKKKIVRCAVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQMESEVLCMALSNAPSG 172
LI HPE LD M S+V +
Sbjct: 663 -----------------------LIELTTHPE---LD------TMPSKVAIV------QD 684
Query: 173 EQMSRFLAVGLADNTVRLISLAPQ--DCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEP 230
Q + LA+ + ++++SL Q D L +LQ + + ++M+ +
Sbjct: 685 TQHADLLAIADNEGMIKIMSLKDQKEDFLTVISLQLVSEKISDMIMVRDSS--------- 735
Query: 231 AGPVTLGNLYLYVGLQNGALLRMVVDQTSGDLSDNRMRYLGSRPVKLFKIR 281
+G L L+VGL+NG ++ + G +D + R+LG +PV L +R
Sbjct: 736 -----IGQLNLHVGLENGVYMKFHIGDVDGSFTDIKRRFLGLKPVSLSYLR 781
>sp|O49552|DDB1B_ARATH DNA damage-binding protein 1b OS=Arabidopsis thaliana GN=DDB1B PE=2
SV=2
Length = 1088
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 68/280 (24%), Positives = 112/280 (40%), Gaps = 64/280 (22%)
Query: 2 FDAYIVVSFSNAT--LVLSIGETVEEVSGSGFYGTTPTLCCSAMGDNSIVQVYPDGIRHI 59
FD ++VVSF + T L ++I + +EE GF TL C N +VQV + +R +
Sbjct: 413 FDTFLVVSFISETRILAMNIEDELEETEIEGFLSEVQTLFCHDAVYNQLVQVTSNSVRLV 472
Query: 60 GAKNTTWKVSDKKESDKKKIVRCAV-NQRQIVIALQGGRLIYFEMHPVSDKKESDKKKIV 118
+ TT ++ +K ++ V A N Q+++A GG L+Y E + D ++ K ++
Sbjct: 473 SS--TTRELRNKWDAPAGFSVNVATANASQVLLATGGGHLVYLE---IGDGTLTEVKHVL 527
Query: 119 RCAVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQMESEVLCMALSNAPSGEQMSRF 178
+E EV C+ ++ S+
Sbjct: 528 --------------------------------------LEYEVSCLDINPIGDNPNYSQL 549
Query: 179 LAVGL-ADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAGPVTLG 237
AVG+ D +VR+ L + ++ L G L+ G S
Sbjct: 550 AAVGMWTDISVRIFVLPDLTLITKEELGGEIIPRSVLLCAFEGIS--------------- 594
Query: 238 NLYLYVGLQNGALLRMVVDQTSGDLSDNRMRYLGSRPVKL 277
YL L +G LL +D + G L D + LG+RP+ L
Sbjct: 595 --YLLCALGDGHLLNFQLDTSCGKLRDRKKVSLGTRPITL 632
>sp|Q6CXH8|RSE1_KLULA Pre-mRNA-splicing factor RSE1 OS=Kluyveromyces lactis (strain ATCC
8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 /
WM37) GN=RSE1 PE=3 SV=1
Length = 1269
Score = 54.7 bits (130), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 68/282 (24%), Positives = 120/282 (42%), Gaps = 63/282 (22%)
Query: 1 EFDAYIVVSFSNATLVLSIGE-TVEEVSGSG--FYGTTPTLCCSAMGDNSIVQVYPDGIR 57
E + I +S +T +L I E TVE+ G F P+L AM SI+QV D
Sbjct: 489 ETHSLIFLSMETSTTILKIHEGTVEDFGGDSNPFILNKPSLFVGAMVQRSIIQVTRD--- 545
Query: 58 HIGAKNTTWKVSDKKESDKKKIVRCAVNQRQIVIALQGGRLIYFEMHPVSDKKESDKKKI 117
C + QI+ G E +P + I
Sbjct: 546 ------------------------CLL---QIIEMHDGPYTKKLEWYPPA------GVGI 572
Query: 118 VRCAVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQMESEVLCMALSNAPSGEQMSR 177
V N+ Q+V+AL + YFE+ ++ L+E + ++M+S V +AL Q S
Sbjct: 573 VTAFCNETQLVVALTNHEICYFEIIEDS--LNELQDRVEMDSTVNSIALLAG----QKSG 626
Query: 178 FLAVGLADNTVRLISLAPQ--DCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAGPVT 235
+ +G D+++++++L + D +Q L SL+ + +SD
Sbjct: 627 YCVLGCEDSSLQILNLQSKHPDFFTICAIQSLISKPHSLLFMR------DTSD------- 673
Query: 236 LGNLYLYVGLQNGALLRMVVDQTSGDLSDNRMRYLGSRPVKL 277
L ++VG+++G L ++ G + D R R++G++PV++
Sbjct: 674 ---LKIHVGMKSGVYLSSKLNINDGTVFDVRTRFVGTKPVQV 712
>sp|Q9XYZ5|DDB1_DROME DNA damage-binding protein 1 OS=Drosophila melanogaster GN=pic PE=1
SV=1
Length = 1140
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 65/282 (23%), Positives = 115/282 (40%), Gaps = 62/282 (21%)
Query: 2 FDAYIVVSFSNATLVLSI-GETVEEVSGSGFYGTTPTLCCSAMGDNSIVQVYPDGIRHIG 60
++ +V++F T +L++ GE VEE GF T CS + + ++QV D +R +
Sbjct: 420 YENTLVLAFVGHTRILTLSGEEVEETEIPGFASDLQTFLCSNVDYDQLIQVTSDSVRLVS 479
Query: 61 AKNTTWKVSDKKESDKKKIVRCAVNQRQIVIALQGGRLIYFEMHPVSDKKESDKKKIVRC 120
+ T V++ + + + I + N QI++A
Sbjct: 480 SA-TKALVAEWRPTGDRTIGVVSCNTTQILVA---------------------------S 511
Query: 121 AVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQMESEVLCMALSNAPSGEQMSRFLA 180
A + IVI E G L E S + EV C+ ++ ++ S +A
Sbjct: 512 ACDIFYIVI--------------EDGSLREQSRR-TLAYEVACLDITPLDETQKKSDLVA 556
Query: 181 VGL-ADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAGPVTLGNL 239
VGL D + ++SL + + + L G + S++M G
Sbjct: 557 VGLWTDISAVILSLPDLETIYTEKLSG-EIIPRSILMTTFE----------------GIH 599
Query: 240 YLYVGLQNGALLRMVVDQTSGDLSDNRMRYLGSRPVKLFKIR 281
YL L +G++ ++DQT+G L+D + LG++P L R
Sbjct: 600 YLLCALGDGSMYYFIMDQTTGQLTDKKKVTLGTQPTTLRTFR 641
>sp|Q6QNU4|DDB1_SOLLC DNA damage-binding protein 1 OS=Solanum lycopersicum GN=DDB1 PE=1
SV=1
Length = 1090
Score = 52.4 bits (124), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 64/279 (22%), Positives = 116/279 (41%), Gaps = 62/279 (22%)
Query: 2 FDAYIVVSFSNATLVLSIG--ETVEEVSGSGFYGTTPTLCCSAMGDNSIVQVYPDGIRHI 59
+D ++VVSF + T VL++ + +EE GF TL C N +VQV + +R +
Sbjct: 413 YDTFLVVSFISETRVLAMNLEDELEETEIEGFNSQVQTLFCHDAVYNQLVQVTSNSVRLV 472
Query: 60 GAKNTTWKVSDKKESDKKKIVRCAVNQRQIVIALQGGRLIYFEMHPVSDKKESDKKKIVR 119
+ + K ++ V +VN
Sbjct: 473 SSTSRDLK------NEWFAPVGYSVNV--------------------------------- 493
Query: 120 CAVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQMESEVLCMALSNAPSGEQMSRFL 179
N Q+++A GG L+Y E+ G+L+E +++ ++ C+ ++ S
Sbjct: 494 ATANATQVLLATGGGHLVYLEIG--DGVLNEVKYA-KLDYDISCLDINPIGENPNYSNIA 550
Query: 180 AVGL-ADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAGPVTLGN 238
AVG+ D +VR+ SL + + ++ L G + S++M G
Sbjct: 551 AVGMWTDISVRIYSLPDLNLITKEQLGG-EIIPRSVLMCSFE----------------GI 593
Query: 239 LYLYVGLQNGALLRMVVDQTSGDLSDNRMRYLGSRPVKL 277
YL L +G LL V+ ++G+L+D + LG++P+ L
Sbjct: 594 SYLLCALGDGHLLNFVLSMSTGELTDRKKVSLGTQPITL 632
>sp|Q6E7D1|DDB1_SOLCE DNA damage-binding protein 1 OS=Solanum cheesmanii GN=DDB1 PE=3
SV=1
Length = 1095
Score = 52.4 bits (124), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 64/279 (22%), Positives = 117/279 (41%), Gaps = 62/279 (22%)
Query: 2 FDAYIVVSFSNATLVLSIG--ETVEEVSGSGFYGTTPTLCCSAMGDNSIVQVYPDGIRHI 59
+D ++VVSF + T VL++ + +EE GF TL C N +VQV + +R +
Sbjct: 418 YDTFLVVSFISETRVLAMNLEDELEETEIEGFNSQVQTLFCHDAVYNQLVQVTSNSVRLV 477
Query: 60 GAKNTTWKVSDKKESDKKKIVRCAVNQRQIVIALQGGRLIYFEMHPVSDKKESDKKKIVR 119
+ + K ++ V +VN
Sbjct: 478 SSTSRDLK------NEWFAPVGYSVNV--------------------------------- 498
Query: 120 CAVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQMESEVLCMALSNAPSGEQMSRFL 179
N Q+++A GG L+Y E+ G+L+E + +++ ++ C+ ++ S
Sbjct: 499 ATANATQVLLATGGGHLVYLEI--GDGVLNEV-KYAKLDYDISCLDINPIGENPNYSNIA 555
Query: 180 AVGL-ADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAGPVTLGN 238
AVG+ D +VR+ SL + + ++ L G + S++M G
Sbjct: 556 AVGMWTDISVRIYSLPDLNLITKEQLGG-EIIPRSVLMCSFE----------------GI 598
Query: 239 LYLYVGLQNGALLRMVVDQTSGDLSDNRMRYLGSRPVKL 277
YL L +G LL V+ ++G+L+D + LG++P+ L
Sbjct: 599 SYLLCALGDGHLLNFVLSMSTGELTDRKKVSLGTQPITL 637
>sp|B0M0P5|DDB1_DICDI DNA damage-binding protein 1 OS=Dictyostelium discoideum GN=repE
PE=1 SV=1
Length = 1181
Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 72/285 (25%), Positives = 121/285 (42%), Gaps = 62/285 (21%)
Query: 3 DAYIVVSFSNATLVLSI-GETVEEVSGSGFYGTTPTLCCSAMGD-NSIVQVYPDGIRHIG 60
D Y++ SF T VLS GE +EE G TL C + N ++Q+ I I
Sbjct: 474 DRYLITSFIECTKVLSFQGEEIEETEFEGLESNCSTLYCGTIDKLNLLIQITNVSINLID 533
Query: 61 AKNTTWKVSDKKESDKKKIVRCAVNQRQIVIALQGGRLIYFEMHPVSDKKESDKKKIVRC 120
+ NT +VS ++I + NQ QIV+++ L+YF+++ S K I
Sbjct: 534 S-NTFKRVSQWNVEPSRRINLVSTNQDQIVLSIDKS-LLYFQIN-------SSNKSI--- 581
Query: 121 AVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQMESEVLCMALSNAPSG-EQMSRFL 179
Q+V + I++ E+ C+ +S S + S+ +
Sbjct: 582 -----QLV------------------------KEIELPHEISCIDISPFDSFMDTKSQLV 612
Query: 180 AVGLA-DNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAGPVTLGN 238
+VGL D T+R+ L + + ++ L G L S++MI + D
Sbjct: 613 SVGLWNDITLRIFKLPTLEEIWKEPLGG-EILPRSILMISFDSID--------------- 656
Query: 239 LYLYVGLQNGALLRMVVDQTSGDLSDNRMRYLGSRPVKLFKIRCQ 283
Y++ L +G L + D +S L D R LG++P+ L K + +
Sbjct: 657 -YIFCSLGDGHLFKFQFDFSSFKLFDKRKLTLGTQPIILKKFKLK 700
>sp|Q9EPU4|CPSF1_MOUSE Cleavage and polyadenylation specificity factor subunit 1 OS=Mus
musculus GN=Cpsf1 PE=1 SV=1
Length = 1441
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 62/129 (48%), Gaps = 4/129 (3%)
Query: 4 AYIVVSFSNATLVLSIGETVEEVSGSGFYGTTPTLCCSAMGDNS-IVQVYPDGIRHIGAK 62
++++S ++T++L G+ + E+ SGF PT+ +GDN IVQV P GIR +
Sbjct: 571 GFLILSREDSTMILQTGQEIMELDTSGFATQGPTVFAGNIGDNRYIVQVSPLGIRLLEGV 630
Query: 63 NTTWKVSDKKESDKKKIVRCAVNQRQIVIALQGGRLIYFEMHPVSDKKESDKKKIVRCAV 122
N + + IV+CAV +VI G + F + S + + + +
Sbjct: 631 NQLHFIPVDLGA---PIVQCAVADPYVVIMSAEGHVTMFLLKSDSYGGRHHRLALHKPPL 687
Query: 123 NQRQIVIAL 131
+ + VIAL
Sbjct: 688 HHQSKVIAL 696
>sp|Q10569|CPSF1_BOVIN Cleavage and polyadenylation specificity factor subunit 1 OS=Bos
taurus GN=CPSF1 PE=1 SV=1
Length = 1444
Score = 48.5 bits (114), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 61/129 (47%), Gaps = 4/129 (3%)
Query: 4 AYIVVSFSNATLVLSIGETVEEVSGSGFYGTTPTLCCSAMGDNS-IVQVYPDGIRHIGAK 62
++++S ++T++L G+ + E+ SGF PT+ +GDN IVQV P GIR +
Sbjct: 574 GFLILSREDSTMILQTGQEIMELDASGFATQGPTVFAGNIGDNRYIVQVSPLGIRLLEGV 633
Query: 63 NTTWKVSDKKESDKKKIVRCAVNQRQIVIALQGGRLIYFEMHPVSDKKESDKKKIVRCAV 122
N + S IV+CAV +VI G + F + S + + + +
Sbjct: 634 NQLHFIPVDLGS---PIVQCAVADPYVVIMSAEGHVTMFLLKNDSYGGRHHRLALHKPPL 690
Query: 123 NQRQIVIAL 131
+ + VI L
Sbjct: 691 HHQSKVITL 699
>sp|Q10570|CPSF1_HUMAN Cleavage and polyadenylation specificity factor subunit 1 OS=Homo
sapiens GN=CPSF1 PE=1 SV=2
Length = 1443
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 61/128 (47%), Gaps = 4/128 (3%)
Query: 5 YIVVSFSNATLVLSIGETVEEVSGSGFYGTTPTLCCSAMGDNS-IVQVYPDGIRHIGAKN 63
++++S ++T++L G+ + E+ SGF PT+ +GDN IVQV P GIR + N
Sbjct: 574 FLILSREDSTMILQTGQEIMELDTSGFATQGPTVFAGNIGDNRYIVQVSPLGIRLLEGVN 633
Query: 64 TTWKVSDKKESDKKKIVRCAVNQRQIVIALQGGRLIYFEMHPVSDKKESDKKKIVRCAVN 123
+ + IV+CAV +VI G + F + S + + + ++
Sbjct: 634 QLHFIPVDLGA---PIVQCAVADPYVVIMSAEGHVTMFLLKSDSYGGRHHRLALHKPPLH 690
Query: 124 QRQIVIAL 131
+ VI L
Sbjct: 691 HQSKVITL 698
>sp|Q6FLQ6|RSE1_CANGA Pre-mRNA-splicing factor RSE1 OS=Candida glabrata (strain ATCC 2001
/ CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=RSE1
PE=3 SV=1
Length = 1296
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 57/243 (23%), Positives = 101/243 (41%), Gaps = 56/243 (23%)
Query: 37 TLCCSAMGDNSIVQVYPDGIRHIGAKNTTWKVSDKKESDKKKIVRCAVNQRQIVIALQGG 96
T+ + MGDNSI+QV D R I + D K+ + K+
Sbjct: 503 TIHVATMGDNSIIQVCKDEFRQI--------LLDSKDEENFKM----------------- 537
Query: 97 RLIYFEMHPVSDKKESDKKKIVRCAVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQ 156
L ++ VS I+ N Q+++AL ++Y ++ E L E +
Sbjct: 538 NLKWYPPAGVS---------ILSAVSNFSQLILALSNNEIVYLQL--ENNTLIEYKNRPE 586
Query: 157 MESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQD---CLKQKNLQGLPDLAES 213
+ + +AL N + S LAVG +DN V ++SL D + Q L + S
Sbjct: 587 LPDVITSLALLN--DNTKKSEILAVGTSDNMVNVLSLEIVDEAISFETVVFQALDAIPSS 644
Query: 214 LVMIEMGASDPTSSDEPAGPVTLGNLYLYVGLQNGALLRMVVDQTSGDLSDNRMRYLGSR 273
L+++ G L N L++G+++G+ L +D + +++ + LG+R
Sbjct: 645 LLILNQGHK-------------LVN--LHIGVEDGSYLVNRLDLRNMSINNILRKQLGTR 689
Query: 274 PVK 276
+K
Sbjct: 690 SIK 692
>sp|Q9V726|CPSF1_DROME Cleavage and polyadenylation specificity factor subunit 1
OS=Drosophila melanogaster GN=Cpsf160 PE=1 SV=1
Length = 1455
Score = 34.7 bits (78), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 5 YIVVSFSNATLVLSIGETVEEVSGSGFYGTTPTLCCSAMGDNS-IVQVYPDGIR 57
++++S N+TLVL G+ + E+ +GF PT+ +G IVQV +R
Sbjct: 582 FMLLSQRNSTLVLQTGQEINEIENTGFTVNQPTIFVGNLGQQRFIVQVTTRHVR 635
>sp|Q7XWP1|CPSF1_ORYSJ Probable cleavage and polyadenylation specificity factor subunit 1
OS=Oryza sativa subsp. japonica GN=Os04g0252200 PE=3
SV=2
Length = 1441
Score = 34.3 bits (77), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 1 EFDAYIVVSFSNATLVLSIGETVEEVSGSGFYGTTPTLCCSA--MGDNSIVQVYPDGIR 57
E+ AY+++S N T+VL G+ + EV+ + Y + + G ++QVY G R
Sbjct: 598 EYHAYLIISLENRTMVLETGDDLGEVTETVDYFVQASTIAAGNLFGRRRVIQVYGKGAR 656
>sp|O74733|CFT1_SCHPO Protein cft1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=cft1 PE=3 SV=1
Length = 1441
Score = 33.9 bits (76), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 50/105 (47%), Gaps = 5/105 (4%)
Query: 1 EFDAYIVVSFSNATLVLSIGETVEEVSGSGFYGTTPTLCC-SAMGDNSIVQVYPDGIRHI 59
E + Y+V+S + + GET +EV S F + TL S + +VQ+ P +R
Sbjct: 585 ELETYLVLSKEKESFIFLAGETFDEVQHSDFSKDSKTLNVGSLLSGMRMVQICPTSLR-- 642
Query: 60 GAKNTTWKVSDKKESDKKKI-VRCAVNQRQIVIALQGGRLIYFEM 103
++ +++ KK+I V ++ I++ GG + ++M
Sbjct: 643 -VYDSNLRLTQLFNFSKKQIVVSTSICDPCIIVVFLGGGIALYKM 686
>sp|P30182|TOP2_ARATH DNA topoisomerase 2 OS=Arabidopsis thaliana GN=TOP2 PE=2 SV=2
Length = 1473
Score = 33.5 bits (75), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 67/153 (43%), Gaps = 22/153 (14%)
Query: 84 VNQRQIVIALQGGRLIYFEMH---PVSDKKESDKKKIVRCAVNQRQIVIALQGGRLIYFE 140
+++ ++ A Q G L F++ S+ DKK +++ V QI+ R Y+E
Sbjct: 962 LSEENMLAARQEGFLKKFKLTTTIATSNMHLFDKKGVIKKYVTPEQILEEFFDLRFEYYE 1021
Query: 141 MHPETGILDECSETIQMESEVLCMALSNAPSGEQMSRFLAVGLADNTV---RLISLAPQD 197
ET + + ME E+L + E +RF+ L+ + R + +D
Sbjct: 1022 KRKETVVKN-------MEIELLKL--------ENKARFILAVLSGEIIVNKRKKADIVED 1066
Query: 198 CLKQKNLQGLPDLAESLVMIEMGASDPTSSDEP 230
L+QK P AES+ GA D +++EP
Sbjct: 1067 -LRQKGFTPFPRKAESVEAAIAGAVDDDAAEEP 1098
>sp|Q8EAZ0|CVRA_SHEON Cell volume regulation protein A homolog OS=Shewanella oneidensis
(strain MR-1) GN=cvrA PE=3 SV=1
Length = 574
Score = 32.0 bits (71), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 160 EVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEM 219
E L S AP +++SRF D V+L LAP L + G +A+ LV +E+
Sbjct: 478 EALSNLFSQAPETDEVSRFFGDFFIDTEVKLADLAPIYGLTLDDETGAMTVAD-LVALEL 536
Query: 220 GASDPTSSDE 229
GA P D+
Sbjct: 537 GA-HPVLGDQ 545
>sp|Q9SVA1|FK100_ARATH F-box/kelch-repeat protein At4g39570 OS=Arabidopsis thaliana
GN=At4g39570 PE=2 SV=1
Length = 395
Score = 31.6 bits (70), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 39/90 (43%), Gaps = 9/90 (10%)
Query: 33 GTTPTLCCSAMGDNSIVQVYPDGIRHIGAKNTTWKVSDKKESDKKKIVRCAVNQRQIVIA 92
G + C+ + +N ++ Y D R K WKV K K+ R + IA
Sbjct: 277 GQSWFWSCNCVIEN-VLYCYGDAFRWFDTKLRLWKV--MKVKGLPKLSR----NVDVKIA 329
Query: 93 LQGGRLIYFEMHPVSDKKESDKKKIVRCAV 122
GG++ F +P SD KI+RCAV
Sbjct: 330 DYGGKMAIFWDNP--SPSASDTNKIIRCAV 357
>sp|P10691|SUS1_SOLTU Sucrose synthase OS=Solanum tuberosum PE=2 SV=1
Length = 805
Score = 31.6 bits (70), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 7/85 (8%)
Query: 138 YFEMHP---ETGILDECSETIQMESEVLCMALS--NAPSGEQMSRFLAVGLADNTVRLIS 192
YFE E G+ +T + E++CM L AP + +FL G ++
Sbjct: 224 YFEFEHKFQEIGLEKGWGDTAERVLEMVCMLLDLLEAPDSCTLEKFL--GRIPMVFNVVI 281
Query: 193 LAPQDCLKQKNLQGLPDLAESLVMI 217
L+P Q+N+ G PD +V I
Sbjct: 282 LSPHGYFAQENVLGYPDTGGQVVYI 306
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.134 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 104,912,272
Number of Sequences: 539616
Number of extensions: 4302722
Number of successful extensions: 9787
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 9641
Number of HSP's gapped (non-prelim): 93
length of query: 290
length of database: 191,569,459
effective HSP length: 116
effective length of query: 174
effective length of database: 128,974,003
effective search space: 22441476522
effective search space used: 22441476522
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)