Query psy14552
Match_columns 290
No_of_seqs 159 out of 541
Neff 7.1
Searched_HMMs 29240
Date Fri Aug 16 22:47:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14552.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14552hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ei3_A DNA damage-binding prot 100.0 8.5E-36 2.9E-40 317.3 30.5 227 1-289 438-668 (1158)
2 3ei3_A DNA damage-binding prot 99.2 6.9E-10 2.4E-14 118.4 20.3 122 77-218 524-660 (1158)
3 1ri6_A Putative isomerase YBHE 97.9 0.011 3.8E-07 51.6 28.8 139 121-284 186-335 (343)
4 2ovr_B FBW7, F-BOX/WD repeat p 97.6 0.043 1.5E-06 50.6 28.6 155 75-257 278-442 (445)
5 1gxr_A ESG1, transducin-like e 97.5 0.035 1.2E-06 48.1 27.8 148 76-255 183-335 (337)
6 3jrp_A Fusion protein of prote 97.5 0.036 1.2E-06 48.9 23.0 160 86-257 23-191 (379)
7 1gxr_A ESG1, transducin-like e 97.5 0.04 1.4E-06 47.8 25.6 148 77-256 142-295 (337)
8 3k26_A Polycomb protein EED; W 97.4 0.011 3.8E-07 52.0 17.5 153 77-256 19-191 (366)
9 1k8k_C P40, ARP2/3 complex 41 97.3 0.042 1.4E-06 48.5 19.9 147 86-256 20-172 (372)
10 1sq9_A Antiviral protein SKI8; 97.2 0.051 1.7E-06 48.7 20.5 117 76-195 16-157 (397)
11 2ynn_A Coatomer subunit beta'; 97.2 0.091 3.1E-06 46.1 23.3 148 83-255 64-215 (304)
12 4gqb_B Methylosome protein 50; 97.2 0.094 3.2E-06 47.5 22.0 150 79-255 85-244 (344)
13 3hfq_A Uncharacterized protein 97.2 0.11 3.7E-06 46.0 27.4 138 119-281 193-341 (347)
14 3jrp_A Fusion protein of prote 97.2 0.11 3.7E-06 45.8 28.8 164 75-257 100-287 (379)
15 4a11_B DNA excision repair pro 97.1 0.059 2E-06 48.0 19.3 153 77-256 44-217 (408)
16 1p22_A F-BOX/WD-repeat protein 97.1 0.19 6.4E-06 46.3 23.1 148 76-255 133-283 (435)
17 1pgu_A Actin interacting prote 97.0 0.039 1.3E-06 52.4 18.0 154 77-257 447-614 (615)
18 4ery_A WD repeat-containing pr 97.0 0.16 5.5E-06 44.1 24.4 147 79-255 68-221 (312)
19 3zwl_B Eukaryotic translation 97.0 0.17 5.7E-06 44.2 22.5 145 86-256 44-205 (369)
20 3dwl_C Actin-related protein 2 97.0 0.13 4.5E-06 45.7 20.2 111 76-194 55-176 (377)
21 3mmy_A MRNA export factor; mRN 96.9 0.14 4.8E-06 44.7 20.0 149 77-257 40-199 (368)
22 3ow8_A WD repeat-containing pr 96.9 0.19 6.5E-06 44.6 21.0 147 77-254 165-318 (321)
23 3jro_A Fusion protein of prote 96.9 0.41 1.4E-05 48.0 25.4 165 76-257 53-238 (753)
24 3ow8_A WD repeat-containing pr 96.9 0.2 6.7E-06 44.5 20.5 142 83-255 131-277 (321)
25 2ynn_A Coatomer subunit beta'; 96.8 0.13 4.4E-06 45.1 18.7 141 86-255 25-170 (304)
26 4ery_A WD repeat-containing pr 96.8 0.22 7.6E-06 43.2 22.6 150 78-255 109-266 (312)
27 1sq9_A Antiviral protein SKI8; 96.8 0.17 5.9E-06 45.1 19.7 110 76-196 186-323 (397)
28 2aq5_A Coronin-1A; WD40 repeat 96.8 0.21 7.3E-06 45.2 20.6 152 76-256 81-253 (402)
29 3jro_A Fusion protein of prote 96.8 0.21 7.2E-06 50.1 22.2 161 86-258 21-190 (753)
30 1r5m_A SIR4-interacting protei 96.8 0.15 5.3E-06 45.4 19.3 108 76-195 247-361 (425)
31 3vl1_A 26S proteasome regulato 96.8 0.064 2.2E-06 48.5 16.7 143 82-255 64-210 (420)
32 3vl1_A 26S proteasome regulato 96.7 0.3 1E-05 44.0 22.5 161 76-256 139-321 (420)
33 1yfq_A Cell cycle arrest prote 96.7 0.12 4E-06 45.1 17.6 115 75-196 100-226 (342)
34 3i2n_A WD repeat-containing pr 96.7 0.27 9.3E-06 42.8 23.2 148 85-257 128-291 (357)
35 3i2n_A WD repeat-containing pr 96.7 0.29 9.9E-06 42.6 23.4 113 77-195 165-291 (357)
36 3fm0_A Protein CIAO1; WDR39,SG 96.6 0.35 1.2E-05 43.2 21.7 68 121-197 70-138 (345)
37 1ri6_A Putative isomerase YBHE 96.6 0.29 1E-05 42.3 20.4 120 118-262 89-214 (343)
38 2vdu_B TRNA (guanine-N(7)-)-me 96.6 0.22 7.7E-06 46.0 19.7 115 121-256 111-228 (450)
39 1erj_A Transcriptional repress 96.6 0.3 1E-05 44.5 20.1 153 79-256 126-286 (393)
40 3ei3_B DNA damage-binding prot 96.6 0.39 1.3E-05 42.8 24.1 153 75-256 117-281 (383)
41 4g56_B MGC81050 protein; prote 96.5 0.24 8.3E-06 44.6 18.7 158 77-262 140-304 (357)
42 3mkq_A Coatomer beta'-subunit; 96.5 0.76 2.6E-05 45.4 26.8 152 79-255 58-215 (814)
43 1yfq_A Cell cycle arrest prote 96.5 0.37 1.3E-05 41.8 23.2 154 78-258 58-226 (342)
44 2vdu_B TRNA (guanine-N(7)-)-me 96.4 0.56 1.9E-05 43.3 25.7 112 78-199 151-275 (450)
45 4g56_B MGC81050 protein; prote 96.4 0.15 5E-06 46.1 16.7 150 79-255 97-256 (357)
46 2pbi_B Guanine nucleotide-bind 96.4 0.21 7.3E-06 44.9 17.7 148 79-255 157-313 (354)
47 2pbi_B Guanine nucleotide-bind 96.3 0.54 1.9E-05 42.1 21.4 102 87-196 211-316 (354)
48 1got_B GT-beta; complex (GTP-b 96.3 0.53 1.8E-05 41.7 26.1 148 79-255 146-299 (340)
49 2pm9_A Protein WEB1, protein t 96.3 0.16 5.6E-06 45.5 16.3 167 22-195 11-197 (416)
50 3gre_A Serine/threonine-protei 96.3 0.45 1.5E-05 43.3 19.1 148 87-256 77-244 (437)
51 4gqb_B Methylosome protein 50; 96.2 0.63 2.2E-05 41.9 22.7 157 78-262 129-292 (344)
52 1k8k_C P40, ARP2/3 complex 41 96.2 0.55 1.9E-05 41.2 29.4 151 76-257 96-274 (372)
53 3v7d_B Cell division control p 96.2 0.71 2.4E-05 42.3 25.9 147 77-256 204-380 (464)
54 3fm0_A Protein CIAO1; WDR39,SG 96.2 0.61 2.1E-05 41.5 24.5 152 77-255 62-223 (345)
55 4h5i_A Guanine nucleotide-exch 96.2 0.63 2.2E-05 42.0 19.8 65 121-196 278-344 (365)
56 3mmy_A MRNA export factor; mRN 96.2 0.55 1.9E-05 40.8 20.5 155 77-258 87-248 (368)
57 3scy_A Hypothetical bacterial 96.2 0.64 2.2E-05 41.2 23.3 117 121-264 219-344 (361)
58 3ei3_B DNA damage-binding prot 96.2 0.67 2.3E-05 41.3 21.5 153 77-257 74-236 (383)
59 1vyh_C Platelet-activating fac 96.1 0.78 2.7E-05 42.0 22.0 155 77-255 193-367 (410)
60 3f3f_A Nucleoporin SEH1; struc 96.1 0.39 1.3E-05 41.0 17.0 116 121-256 20-142 (351)
61 3mkq_A Coatomer beta'-subunit; 96.1 1.2 4.2E-05 43.8 28.9 151 78-255 99-257 (814)
62 3odt_A Protein DOA1; ubiquitin 96.1 0.56 1.9E-05 39.9 21.2 139 84-255 69-212 (313)
63 1pgu_A Actin interacting prote 96.1 1 3.4E-05 42.5 22.0 109 75-194 487-613 (615)
64 4aez_A CDC20, WD repeat-contai 96.0 0.87 3E-05 41.2 27.9 150 77-256 218-379 (401)
65 3dwl_C Actin-related protein 2 96.0 0.049 1.7E-06 48.6 10.8 146 87-256 24-176 (377)
66 2ymu_A WD-40 repeat protein; u 95.9 1.1 3.9E-05 42.1 21.9 104 78-194 428-538 (577)
67 1r5m_A SIR4-interacting protei 95.9 0.86 2.9E-05 40.4 22.5 140 85-256 216-360 (425)
68 1vyh_C Platelet-activating fac 95.9 0.57 1.9E-05 42.9 18.0 148 77-255 109-263 (410)
69 1p22_A F-BOX/WD-repeat protein 95.9 1 3.6E-05 41.1 28.6 149 75-255 172-323 (435)
70 2aq5_A Coronin-1A; WD40 repeat 95.8 1 3.5E-05 40.6 21.9 152 76-257 131-299 (402)
71 3dw8_B Serine/threonine-protei 95.8 1 3.6E-05 40.6 19.9 159 75-256 27-257 (447)
72 4aow_A Guanine nucleotide-bind 95.8 0.85 2.9E-05 39.3 21.5 110 77-194 216-336 (340)
73 3bws_A Protein LP49; two-domai 95.7 1.1 3.9E-05 40.3 24.8 104 121-256 311-431 (433)
74 2xyi_A Probable histone-bindin 95.7 0.49 1.7E-05 43.6 16.8 155 78-257 183-353 (430)
75 3vu4_A KMHSV2; beta-propeller 95.7 1.1 3.9E-05 40.0 27.6 100 85-195 146-271 (355)
76 3zwl_B Eukaryotic translation 95.7 0.97 3.3E-05 39.2 27.8 152 77-255 75-247 (369)
77 3lrv_A PRE-mRNA-splicing facto 95.6 1 3.6E-05 39.7 18.0 107 82-197 90-203 (343)
78 1got_B GT-beta; complex (GTP-b 95.5 1.2 4.1E-05 39.4 25.9 107 78-195 186-301 (340)
79 4aez_A CDC20, WD repeat-contai 95.5 1.4 4.7E-05 39.8 28.1 153 75-257 175-336 (401)
80 2pm9_A Protein WEB1, protein t 95.5 0.081 2.8E-06 47.6 10.3 141 93-256 42-196 (416)
81 3sfz_A APAF-1, apoptotic pepti 95.4 0.81 2.8E-05 47.8 19.1 142 86-256 627-773 (1249)
82 2oaj_A Protein SNI1; WD40 repe 95.4 0.42 1.4E-05 49.3 16.7 158 86-261 447-666 (902)
83 3scy_A Hypothetical bacterial 95.3 1.5 5E-05 38.8 28.4 213 30-277 56-311 (361)
84 3gre_A Serine/threonine-protei 95.3 1.7 5.7E-05 39.4 22.2 104 86-196 182-293 (437)
85 2xyi_A Probable histone-bindin 95.3 1.3 4.3E-05 40.7 18.0 148 87-257 142-309 (430)
86 1erj_A Transcriptional repress 95.2 1.7 5.7E-05 39.3 27.0 110 78-195 167-287 (393)
87 4a11_B DNA excision repair pro 95.2 0.56 1.9E-05 41.5 14.8 109 123-256 55-174 (408)
88 4e54_B DNA damage-binding prot 95.1 0.21 7.1E-06 46.1 12.1 108 124-256 132-239 (435)
89 3f3f_A Nucleoporin SEH1; struc 95.1 1.3 4.6E-05 37.6 22.8 114 79-196 14-144 (351)
90 2xzm_R RACK1; ribosome, transl 95.1 1.6 5.5E-05 38.5 23.3 98 87-196 185-286 (343)
91 2ovr_B FBW7, F-BOX/WD repeat p 95.1 2 6.8E-05 39.2 31.2 149 75-255 238-389 (445)
92 2oaj_A Protein SNI1; WD40 repe 95.0 0.98 3.4E-05 46.5 18.0 98 86-195 29-129 (902)
93 2hes_X YDR267CP; beta-propelle 94.9 1.8 6.2E-05 38.1 20.5 157 77-256 59-229 (330)
94 1nr0_A Actin interacting prote 94.9 1.4 4.8E-05 42.7 17.9 111 121-257 457-567 (611)
95 3odt_A Protein DOA1; ubiquitin 94.9 1.5 5.3E-05 37.0 23.0 140 84-254 27-171 (313)
96 2xzm_R RACK1; ribosome, transl 94.9 1.9 6.5E-05 38.0 18.9 155 78-255 78-242 (343)
97 3v7d_B Cell division control p 94.9 2.3 7.7E-05 38.9 25.6 108 77-196 311-422 (464)
98 2ymu_A WD-40 repeat protein; u 94.8 2.6 8.9E-05 39.5 22.1 143 78-254 387-536 (577)
99 3u4y_A Uncharacterized protein 94.8 1.8 6.2E-05 37.3 25.7 115 121-262 136-255 (331)
100 4h5i_A Guanine nucleotide-exch 94.8 2.2 7.6E-05 38.3 21.4 109 121-257 228-343 (365)
101 3iz6_a 40S ribosomal protein R 94.7 2.3 8E-05 38.2 17.9 154 77-256 206-374 (380)
102 4e54_B DNA damage-binding prot 94.6 0.6 2.1E-05 42.9 13.9 112 76-195 119-240 (435)
103 1nr0_A Actin interacting prote 94.6 1.4 4.7E-05 42.7 17.1 142 86-255 460-609 (611)
104 4aow_A Guanine nucleotide-bind 94.5 2.1 7.1E-05 36.8 26.8 109 121-256 224-336 (340)
105 3sfz_A APAF-1, apoptotic pepti 94.5 5.3 0.00018 41.6 22.1 65 121-195 970-1034(1249)
106 2hes_X YDR267CP; beta-propelle 94.5 2.4 8.1E-05 37.3 20.7 110 78-194 16-137 (330)
107 3iz6_a 40S ribosomal protein R 94.3 1.8 6E-05 39.0 15.9 142 87-255 171-327 (380)
108 1l0q_A Surface layer protein; 94.1 3 0.0001 36.9 28.4 154 86-275 127-289 (391)
109 3k26_A Polycomb protein EED; W 94.0 2.7 9.4E-05 36.3 25.9 110 76-195 115-260 (366)
110 3dm0_A Maltose-binding peripla 94.0 0.99 3.4E-05 44.3 14.5 111 79-195 433-550 (694)
111 3frx_A Guanine nucleotide-bind 93.9 3.1 0.0001 36.4 23.1 108 78-196 109-228 (319)
112 3frx_A Guanine nucleotide-bind 93.8 3.1 0.00011 36.3 21.4 144 86-255 77-225 (319)
113 2oit_A Nucleoporin 214KDA; NH2 93.4 1.4 4.8E-05 41.1 14.0 110 121-255 101-221 (434)
114 2ece_A 462AA long hypothetical 93.4 3.6 0.00012 39.5 16.8 91 176-287 332-454 (462)
115 3bg1_A Protein SEC13 homolog; 93.3 1.5 5E-05 38.4 13.3 112 121-256 22-135 (316)
116 3dw8_B Serine/threonine-protei 93.3 1.8 6.2E-05 39.0 14.2 108 78-195 179-315 (447)
117 3dm0_A Maltose-binding peripla 93.3 4 0.00014 39.9 17.7 96 88-194 397-502 (694)
118 2pm7_B Protein transport prote 93.2 3.7 0.00013 35.3 24.2 160 77-257 100-285 (297)
119 3hfq_A Uncharacterized protein 92.3 5.2 0.00018 34.8 23.9 120 118-262 91-223 (347)
120 2pm7_B Protein transport prote 92.0 5.4 0.00018 34.3 23.2 104 86-196 21-133 (297)
121 4gga_A P55CDC, cell division c 92.0 6.9 0.00024 35.4 21.7 138 86-256 116-260 (420)
122 3u4y_A Uncharacterized protein 91.5 6.1 0.00021 33.9 22.8 107 121-255 92-205 (331)
123 3lrv_A PRE-mRNA-splicing facto 91.5 6.8 0.00023 34.3 28.4 156 77-258 126-293 (343)
124 1l0q_A Surface layer protein; 91.4 7 0.00024 34.4 29.4 146 78-255 75-231 (391)
125 1xip_A Nucleoporin NUP159; bet 91.4 9.1 0.00031 35.6 17.2 96 123-257 96-191 (388)
126 3bg1_A Protein SEC13 homolog; 91.2 6.9 0.00024 33.9 17.8 158 78-257 105-293 (316)
127 1xip_A Nucleoporin NUP159; bet 91.1 4.3 0.00015 37.8 14.0 130 45-194 49-190 (388)
128 4gga_A P55CDC, cell division c 90.6 9.4 0.00032 34.5 24.9 115 76-195 189-310 (420)
129 1pby_B Quinohemoprotein amine 88.9 9.9 0.00034 32.2 14.9 85 118-216 39-142 (337)
130 2j04_A TAU60, YPL007P, hypothe 88.4 8.3 0.00028 38.1 14.1 110 76-197 85-213 (588)
131 3vu4_A KMHSV2; beta-propeller 88.0 14 0.00047 32.7 25.9 154 77-257 101-271 (355)
132 1nir_A Nitrite reductase; hemo 87.5 20 0.00069 34.2 16.2 72 118-194 184-256 (543)
133 4gq1_A NUP37; propeller, trans 87.5 11 0.00036 34.0 13.6 108 126-255 103-216 (393)
134 3vgz_A Uncharacterized protein 86.7 14 0.00049 31.6 27.1 118 85-217 195-322 (353)
135 2oit_A Nucleoporin 214KDA; NH2 85.2 5.4 0.00019 37.0 10.5 61 124-194 162-222 (434)
136 3amr_A 3-phytase; beta-propell 85.0 24 0.00081 32.6 14.6 113 127-259 88-212 (355)
137 2j04_A TAU60, YPL007P, hypothe 84.8 12 0.00042 36.9 13.1 69 117-196 88-161 (588)
138 3sjl_D Methylamine dehydrogena 84.4 26 0.00088 32.5 17.1 120 125-277 238-379 (386)
139 1jmx_B Amine dehydrogenase; ox 84.3 18 0.00062 30.7 13.6 67 118-195 48-134 (349)
140 1nir_A Nitrite reductase; hemo 84.2 30 0.001 33.0 24.0 153 80-263 184-359 (543)
141 3bws_A Protein LP49; two-domai 83.6 23 0.0008 31.4 29.1 127 77-217 212-353 (433)
142 2j04_B YDR362CP, TAU91; beta p 83.1 31 0.001 32.9 15.1 110 77-195 267-386 (524)
143 1jmx_B Amine dehydrogenase; ox 83.0 18 0.00062 30.8 12.3 57 127-194 14-73 (349)
144 1pby_B Quinohemoprotein amine 80.4 25 0.00086 29.6 25.7 71 177-274 253-323 (337)
145 3q7m_A Lipoprotein YFGL, BAMB; 79.6 32 0.0011 30.3 16.3 98 85-194 52-161 (376)
146 3q7m_A Lipoprotein YFGL, BAMB; 79.3 32 0.0011 30.2 14.6 133 85-254 238-375 (376)
147 4ggc_A P55CDC, cell division c 78.8 27 0.00094 29.1 22.9 114 77-195 110-230 (318)
148 3vgz_A Uncharacterized protein 77.3 33 0.0011 29.2 25.0 206 30-276 95-318 (353)
149 4ggc_A P55CDC, cell division c 76.6 32 0.0011 28.7 25.8 110 77-195 68-181 (318)
150 3dsm_A Uncharacterized protein 75.9 39 0.0013 29.4 21.4 83 118-217 89-180 (328)
151 3sjl_D Methylamine dehydrogena 75.1 52 0.0018 30.4 14.5 92 113-217 280-382 (386)
152 2w18_A PALB2, fancn, partner a 73.4 34 0.0012 31.4 11.5 74 123-202 143-219 (356)
153 2oiz_A Aromatic amine dehydrog 71.7 54 0.0018 29.1 21.5 67 186-277 286-353 (361)
154 4gq1_A NUP37; propeller, trans 68.6 64 0.0022 28.7 19.4 61 126-195 158-218 (393)
155 1jof_A Carboxy-CIS,CIS-muconat 67.1 65 0.0022 28.2 22.3 117 121-258 201-342 (365)
156 2mad_H Methylamine dehydrogena 67.0 63 0.0021 29.1 11.9 86 118-216 272-369 (373)
157 1qks_A Cytochrome CD1 nitrite 58.2 1.3E+02 0.0046 28.8 14.5 82 126-219 168-250 (567)
158 3amr_A 3-phytase; beta-propell 55.0 98 0.0033 28.4 10.8 82 178-273 88-181 (355)
159 3c75_H MADH, methylamine dehyd 53.9 1.4E+02 0.0048 27.7 17.2 83 119-214 325-419 (426)
160 1jof_A Carboxy-CIS,CIS-muconat 48.6 1.4E+02 0.0046 26.0 22.3 106 132-262 117-229 (365)
161 1mda_H Methylamine dehydrogena 46.2 1.2E+02 0.0041 27.5 10.0 86 118-217 269-365 (368)
162 3hxj_A Pyrrolo-quinoline quino 45.8 1.3E+02 0.0045 25.1 12.2 133 86-256 187-323 (330)
163 2j04_B YDR362CP, TAU91; beta p 41.4 2.3E+02 0.0079 26.7 18.3 102 87-194 226-341 (524)
164 2mad_H Methylamine dehydrogena 41.2 1.9E+02 0.0066 25.7 25.8 70 186-279 298-369 (373)
165 2w18_A PALB2, fancn, partner a 35.7 2.6E+02 0.0088 25.5 21.1 20 124-143 193-212 (356)
166 3g4e_A Regucalcin; six bladed 30.6 2.4E+02 0.0081 23.6 18.7 29 237-265 160-188 (297)
167 4gq2_M Nucleoporin NUP120; bet 28.9 1.1E+02 0.0036 31.7 7.2 85 155-260 105-203 (950)
168 3hxj_A Pyrrolo-quinoline quino 27.9 2.6E+02 0.0088 23.2 8.9 96 86-194 225-323 (330)
169 2iwa_A Glutamine cyclotransfer 27.5 3E+02 0.01 23.7 15.6 114 125-275 32-151 (266)
170 3nok_A Glutaminyl cyclase; bet 26.1 3.3E+02 0.011 23.7 13.0 104 124-264 64-169 (268)
171 3dsm_A Uncharacterized protein 24.7 3.3E+02 0.011 23.2 19.8 104 123-263 139-257 (328)
172 3sre_A PON1, serum paraoxonase 22.5 3.4E+02 0.012 24.4 8.7 42 176-217 232-274 (355)
173 2ojh_A Uncharacterized protein 21.3 3.1E+02 0.011 21.7 19.1 184 76-289 41-233 (297)
174 3uc1_A DNA gyrase subunit A; D 20.3 4.5E+02 0.015 23.2 18.3 159 72-257 90-279 (327)
No 1
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=100.00 E-value=8.5e-36 Score=317.28 Aligned_cols=227 Identities=29% Similarity=0.464 Sum_probs=186.6
Q ss_pred CcceEEEEEcCCceEEEEe-CCEEEEeecCCccCCCCeEEEEeeCCCeEEEEecCCeEEEeecCcceeeeccCCCCCceE
Q psy14552 1 EFDAYIVVSFSNATLVLSI-GETVEEVSGSGFYGTTPTLCCSAMGDNSIVQVYPDGIRHIGAKNTTWKVSDKKESDKKKI 79 (290)
Q Consensus 1 ~~~~ylvlS~~~~T~vl~~-~~~~~e~~~~gf~~~~~Ti~~~~~~~~~ivQVt~~~v~l~~~~~~~~~~~~~~~~~~~~I 79 (290)
++|.|||+|++++|+||++ +++++|++++||.++++||+|++++++.+||||+++||+++.+... .+++.+||.+++|
T Consensus 438 ~~~~yLvlS~~~~T~Vl~i~~e~veev~~~gf~~~~~TL~~~~l~~~~ivQVt~~~Irli~~~~~~-~~~~w~~p~~~~I 516 (1158)
T 3ei3_A 438 ETDDTLVLSFVGQTRVLMLNGEEVEETELMGFVDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKA-LVSEWKEPQAKNI 516 (1158)
T ss_dssp SSCCEEEEEETTEEEEEEEETTEEEEECCTTCCSSSCEEEEEEETTTEEEEEESSCEEEEESSSCC-EEEEECCTTCCCC
T ss_pred CCCCEEEEECCCCeEEEEEeCCcccccccccccCCCCcEEEEEcCCCeEEEEecCEEEEEECCCCe-EEEEEECCCCCEE
Confidence 3789999999999999999 8999999999999999999999999999999999999999865321 1223334455555
Q ss_pred EEEeecCceEEEEeeCCeEEEEEecCCCceecCCCceEEEEEeCCCEEEEEEeCCeEEEEEEcCCCCCceeeeeeeecCc
Q psy14552 80 VRCAVNQRQIVIALQGGRLIYFEMHPVSDKKESDKKKIVRCAVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQMES 159 (290)
Q Consensus 80 v~as~n~~qv~ial~~g~i~~~~~~~~~~~~~~~~~~Ii~as~~~~~l~Val~~~~i~~l~l~~~~~~l~~~~~~~~l~~ 159 (290)
++|++|++|+++| .+++++|| ++++ ++|.+. ++.+++.
T Consensus 517 ~~As~n~~~vvva-~g~~l~~f--------------------------------------el~~--~~L~~~-~~~~l~~ 554 (1158)
T 3ei3_A 517 SVASCNSSQVVVA-VGRALYYL--------------------------------------QIHP--QELRQI-SHTEMEH 554 (1158)
T ss_dssp CEEEECSSEEEEE-ETTEEEEE--------------------------------------EEET--TEEEEE-EEEECSS
T ss_pred EEEEeCCCEEEEE-ECCEEEEE--------------------------------------EeeC--Cceeee-cccCCCC
Confidence 5555555555555 24455544 4443 234443 4567899
Q ss_pred ceeEEEeeeCCCCCccccEEEEEeC-CCeEEEEEeCCCCceeEeeEEecCC--cceEEEEEEecCCCCCCCCCCCCCccC
Q psy14552 160 EVLCMALSNAPSGEQMSRFLAVGLA-DNTVRLISLAPQDCLKQKNLQGLPD--LAESLVMIEMGASDPTSSDEPAGPVTL 236 (290)
Q Consensus 160 ei~~l~i~~~~~~~~~~~~l~VGl~-dg~v~i~~l~~~~~l~~~~~~~L~~--~p~Sl~~~~~~~~~~~~~~~~~~~~~~ 236 (290)
||+|+++.+.++++.++.+++||+| |+++++|+|+ .++.+..+.|+. .|+|+++++| +
T Consensus 555 evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~---~l~~~~~~~L~~~~~p~si~l~~~----------------~ 615 (1158)
T 3ei3_A 555 EVACLDITPLGDSNGLSPLCAIGLWTDISARILKLP---SFELLHKEMLGGEIIPRSILMTTF----------------E 615 (1158)
T ss_dssp CEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETT---TCCEEEEEECCSSCCEEEEEEEEE----------------T
T ss_pred ceEEEEeecCCCCcccccEEEEEECCCCEEEEEECC---CCCeEEEEECCCCCCCcEEEEEEe----------------C
Confidence 9999999887666678999999999 9999999997 588888899975 8999999987 3
Q ss_pred CceEEEEEecCceEEEEEEeCCCCcccccceEEecCcceEEEEEEeCCceeec
Q psy14552 237 GNLYLYVGLQNGALLRMVVDQTSGDLSDNRMRYLGSRPVKLFKIRCQGNEANY 289 (290)
Q Consensus 237 ~~~~L~iGl~dG~l~~~~~d~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~~~ 289 (290)
+.+||+|||+||.|++|.+|..+|+|+++|+++||++|++|++++..|+.+||
T Consensus 616 ~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~~~~V~ 668 (1158)
T 3ei3_A 616 SSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVF 668 (1158)
T ss_dssp TEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECCSSCCEEEEEESSSCEEEE
T ss_pred CCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcCCCceEEEEEeeCCceeEE
Confidence 56899999999999999999999999999999999999999999999888876
No 2
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=99.20 E-value=6.9e-10 Score=118.43 Aligned_cols=122 Identities=12% Similarity=0.165 Sum_probs=80.7
Q ss_pred ceEEEEeecCceEEE-EeeCCeEEEEEecCCCceecCCCceEEEEEeC--------CCEEEEEEe-CCeEEEEEEcCCCC
Q psy14552 77 KKIVRCAVNQRQIVI-ALQGGRLIYFEMHPVSDKKESDKKKIVRCAVN--------QRQIVIALQ-GGRLIYFEMHPETG 146 (290)
Q Consensus 77 ~~Iv~as~n~~qv~i-al~~g~i~~~~~~~~~~~~~~~~~~Ii~as~~--------~~~l~Val~-~~~i~~l~l~~~~~ 146 (290)
..|+.|+ +.+++. -+.+|++...+ .+..+. ++.+.+.. ...++||+| |+++++++++.
T Consensus 524 ~~vvva~--g~~l~~fel~~~~L~~~~-----~~~l~~--evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~--- 591 (1158)
T 3ei3_A 524 SQVVVAV--GRALYYLQIHPQELRQIS-----HTEMEH--EVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPS--- 591 (1158)
T ss_dssp SEEEEEE--TTEEEEEEEETTEEEEEE-----EEECSS--CEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTT---
T ss_pred CEEEEEE--CCEEEEEEeeCCceeeec-----ccCCCC--ceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCC---
Confidence 4566664 345544 45667654321 222222 34333532 245999999 99999999975
Q ss_pred Cceeee-eee---ecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCC-CceeEeeEEecCCcceEEEEEE
Q psy14552 147 ILDECS-ETI---QMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQ-DCLKQKNLQGLPDLAESLVMIE 218 (290)
Q Consensus 147 ~l~~~~-~~~---~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~-~~l~~~~~~~L~~~p~Sl~~~~ 218 (290)
++.+. +.+ ..|+++.++.+. +..||++|+.||.+.++.+++. +.|.+.++..||+.|..|..+.
T Consensus 592 -l~~~~~~~L~~~~~p~si~l~~~~-------~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG~~pv~L~~~~ 660 (1158)
T 3ei3_A 592 -FELLHKEMLGGEIIPRSILMTTFE-------SSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFR 660 (1158)
T ss_dssp -CCEEEEEECCSSCCEEEEEEEEET-------TEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECCSSCCEEEEEE
T ss_pred -CCeEEEEECCCCCCCcEEEEEEeC-------CCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcCCCceEEEEEe
Confidence 32321 111 257777777662 3689999999999999999864 4688888889999998877665
No 3
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=97.88 E-value=0.011 Score=51.63 Aligned_cols=139 Identities=13% Similarity=0.148 Sum_probs=86.8
Q ss_pred EeCCCEEEEEE-eCCeEEEEEEcCCCCCceeeeeeee-cCc------ceeEEEeeeCCCCCccccEEEEEe-CCCeEEEE
Q psy14552 121 AVNQRQIVIAL-QGGRLIYFEMHPETGILDECSETIQ-MES------EVLCMALSNAPSGEQMSRFLAVGL-ADNTVRLI 191 (290)
Q Consensus 121 s~~~~~l~Val-~~~~i~~l~l~~~~~~l~~~~~~~~-l~~------ei~~l~i~~~~~~~~~~~~l~VGl-~dg~v~i~ 191 (290)
+.++..++++. .++.+.++.++..++.+... .... ++. .+..+++.+. ..+|+++. .++.+.+|
T Consensus 186 ~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~i~~s~d------g~~l~v~~~~~~~i~v~ 258 (343)
T 1ri6_A 186 HPNEQYAYCVNELNSSVDVWELKDPHGNIECV-QTLDMMPENFSDTRWAADIHITPD------GRHLYACDRTASLITVF 258 (343)
T ss_dssp CTTSSEEEEEETTTTEEEEEESSCTTSCCEEE-EEEECSCTTCCSCCCEEEEEECTT------SSEEEEEETTTTEEEEE
T ss_pred CCCCCEEEEEeCCCCEEEEEEecCCCCcEEEE-eeccccCccccccCCccceEECCC------CCEEEEEecCCCEEEEE
Confidence 55666676665 57889999887533444222 1221 222 4555666532 35677666 59999999
Q ss_pred EeCCC-CceeEeeEEecCCcceEEEEEEecCCCCCCCCCCCCCccCCceEEEEEe-cCceEEEEEEeCCCCcccccceEE
Q psy14552 192 SLAPQ-DCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAGPVTLGNLYLYVGL-QNGALLRMVVDQTSGDLSDNRMRY 269 (290)
Q Consensus 192 ~l~~~-~~l~~~~~~~L~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~~~~~L~iGl-~dG~l~~~~~d~~~~~l~~~~~~~ 269 (290)
.++.. ..++.+.....+..|.++.+.. .+ .+|+++- .+|.+.-|.+|..++.+.......
T Consensus 259 d~~~~~~~~~~~~~~~~~~~~~~~~~s~-----------------dg-~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~ 320 (343)
T 1ri6_A 259 SVSEDGSVLSKEGFQPTETQPRGFNVDH-----------------SG-KYLIAAGQKSHHISVYEIVGEQGLLHEKGRYA 320 (343)
T ss_dssp EECTTSCCEEEEEEEECSSSCCCEEECT-----------------TS-SEEEEECTTTCEEEEEEEETTTTEEEEEEEEE
T ss_pred EEcCCCCceEEeeeecCCCccceEEECC-----------------CC-CEEEEecCCCCeEEEEEEcCCCceeeEccccc
Confidence 99742 2345544444444466665432 23 3578877 679999999999888776656677
Q ss_pred ecCcceEEEEEEeCC
Q psy14552 270 LGSRPVKLFKIRCQG 284 (290)
Q Consensus 270 lG~~pv~l~~~~~~~ 284 (290)
.|..|..+.-..-.+
T Consensus 321 ~g~~p~~i~~~~~~~ 335 (343)
T 1ri6_A 321 VGQGPMWVVVNAHEG 335 (343)
T ss_dssp CSSSCCEEEEEEEC-
T ss_pred cCCCCeeEEEEcccC
Confidence 888898885444433
No 4
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.60 E-value=0.043 Score=50.64 Aligned_cols=155 Identities=15% Similarity=0.217 Sum_probs=96.4
Q ss_pred CCceEEEEeecCceEEEEeeCCeEEEEEecCCCceec-CCCceEEEE-EeCCCEEEEEEeCCeEEEEEEcCCCCCceeee
Q psy14552 75 DKKKIVRCAVNQRQIVIALQGGRLIYFEMHPVSDKKE-SDKKKIVRC-AVNQRQIVIALQGGRLIYFEMHPETGILDECS 152 (290)
Q Consensus 75 ~~~~Iv~as~n~~qv~ial~~g~i~~~~~~~~~~~~~-~~~~~Ii~a-s~~~~~l~Val~~~~i~~l~l~~~~~~l~~~~ 152 (290)
....|.+.+.++.+++.+..+|.|..+.+........ ..+...+.+ +.++..++.+..|+.|+++.+.. +.. .
T Consensus 278 ~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vwd~~~--~~~---~ 352 (445)
T 2ovr_B 278 HTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKT--GQC---L 352 (445)
T ss_dssp CSSCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEETTEEEEEETTSCEEEEETTT--CCE---E
T ss_pred CCCceEEEEECCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEeCCEEEEEeCCCeEEEEECCC--CcE---E
Confidence 3456778888889999999999998887754322211 222222333 56667888888899999998865 321 1
Q ss_pred eeee----cCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEecCCcceEEEEEEecCCCCCCCC
Q psy14552 153 ETIQ----MESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSD 228 (290)
Q Consensus 153 ~~~~----l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~~~~~~~~~~~~~ 228 (290)
.... -...|.++++. ..++++|..||.|.+|.+.....+..+....-+.....+.-+.+.
T Consensus 353 ~~~~~~~~~~~~v~~~~~~--------~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s-------- 416 (445)
T 2ovr_B 353 QTLQGPNKHQSAVTCLQFN--------KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRAS-------- 416 (445)
T ss_dssp EEECSTTSCSSCEEEEEEC--------SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEEC--------
T ss_pred EEEccCCCCCCCEEEEEEC--------CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEec--------
Confidence 2222 34567788773 368999999999999998754333333211111111222223321
Q ss_pred CCCCCccCCceEEEEEecCce----EEEEEEeC
Q psy14552 229 EPAGPVTLGNLYLYVGLQNGA----LLRMVVDQ 257 (290)
Q Consensus 229 ~~~~~~~~~~~~L~iGl~dG~----l~~~~~d~ 257 (290)
....+|.+|-.||. +.-+.++.
T Consensus 417 -------~~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 417 -------NTKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp -------SSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred -------CCEEEEEEcccCCCCccEEEEEECCC
Confidence 34567999999997 66666654
No 5
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=97.55 E-value=0.035 Score=48.14 Aligned_cols=148 Identities=8% Similarity=0.043 Sum_probs=91.4
Q ss_pred CceEEEEee--cCceEEEEeeCCeEEEEEecCCCceec-CCCceEEEE--EeCCCEEEEEEeCCeEEEEEEcCCCCCcee
Q psy14552 76 KKKIVRCAV--NQRQIVIALQGGRLIYFEMHPVSDKKE-SDKKKIVRC--AVNQRQIVIALQGGRLIYFEMHPETGILDE 150 (290)
Q Consensus 76 ~~~Iv~as~--n~~qv~ial~~g~i~~~~~~~~~~~~~-~~~~~Ii~a--s~~~~~l~Val~~~~i~~l~l~~~~~~l~~ 150 (290)
...|...+. +..+++.+..+|.|..+.+........ .....+.+. +.++..++++..++.|+++.+.. +...
T Consensus 183 ~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~--~~~~- 259 (337)
T 1gxr_A 183 TDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNK--PDKY- 259 (337)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTS--SCEE-
T ss_pred cCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCC--CCeE-
Confidence 344555555 456788888889988887653221111 111223222 45677788888899999998875 2221
Q ss_pred eeeeeecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEecCCcceEEEEEEecCCCCCCCCCC
Q psy14552 151 CSETIQMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEP 230 (290)
Q Consensus 151 ~~~~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~~~~~~~~~~~~~~~ 230 (290)
.....+..+.++.+.+. ..++++|..||.+.+|.++....+.. ......+.++...
T Consensus 260 --~~~~~~~~v~~~~~~~~------~~~l~~~~~dg~i~~~~~~~~~~~~~---~~~~~~v~~~~~s------------- 315 (337)
T 1gxr_A 260 --QLHLHESCVLSLKFAYC------GKWFVSTGKDNLLNAWRTPYGASIFQ---SKESSSVLSCDIS------------- 315 (337)
T ss_dssp --EECCCSSCEEEEEECTT------SSEEEEEETTSEEEEEETTTCCEEEE---EECSSCEEEEEEC-------------
T ss_pred --EEcCCccceeEEEECCC------CCEEEEecCCCcEEEEECCCCeEEEE---ecCCCcEEEEEEC-------------
Confidence 12234567888888642 46899999999999999875433211 1222333443332
Q ss_pred CCCccCCceEEEEEecCceEEEEEE
Q psy14552 231 AGPVTLGNLYLYVGLQNGALLRMVV 255 (290)
Q Consensus 231 ~~~~~~~~~~L~iGl~dG~l~~~~~ 255 (290)
....+|+.|..||.+.-|.+
T Consensus 316 -----~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 316 -----VDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp -----TTSCEEEEEETTSCEEEEEE
T ss_pred -----CCCCEEEEecCCCeEEEEEE
Confidence 12346899999999987765
No 6
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=97.53 E-value=0.036 Score=48.89 Aligned_cols=160 Identities=9% Similarity=0.072 Sum_probs=87.0
Q ss_pred CceEEEEeeCCeEEEEEecCCCceec----CCC-ceEEEEE--eC--CCEEEEEEeCCeEEEEEEcCCCCCceeeeeeee
Q psy14552 86 QRQIVIALQGGRLIYFEMHPVSDKKE----SDK-KKIVRCA--VN--QRQIVIALQGGRLIYFEMHPETGILDECSETIQ 156 (290)
Q Consensus 86 ~~qv~ial~~g~i~~~~~~~~~~~~~----~~~-~~Ii~as--~~--~~~l~Val~~~~i~~l~l~~~~~~l~~~~~~~~ 156 (290)
.++++.+..+|.|..+.+... .+.. ..+ ..+.+.+ .. +..++.+..|+.|+++.+.. +..........
T Consensus 23 ~~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~--~~~~~~~~~~~ 99 (379)
T 3jrp_A 23 GKRLATCSSDKTIKIFEVEGE-THKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEEN--GRWSQIAVHAV 99 (379)
T ss_dssp SSEEEEEETTSCEEEEEEETT-EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEET--TEEEEEEEECC
T ss_pred CCEEEEEECCCcEEEEecCCC-cceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCC--CceeEeeeecC
Confidence 456766767888877776521 1111 112 2233333 22 56788888899999999876 32212211112
Q ss_pred cCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEecCCcceEEEEEEecCCCCCCCCCCCCCccC
Q psy14552 157 MESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAGPVTL 236 (290)
Q Consensus 157 l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~ 236 (290)
....|.++++.+.. ...++++|..||.+.+|.+.......... +..-+..+..+.+...... .........
T Consensus 100 ~~~~v~~~~~~~~~----~~~~l~~~~~d~~i~v~d~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~--~~~~~~~~~ 170 (379)
T 3jrp_A 100 HSASVNSVQWAPHE----YGPLLLVASSDGKVSVVEFKENGTTSPII---IDAHAIGVNSASWAPATIE--EDGEHNGTK 170 (379)
T ss_dssp CSSCEEEEEECCGG----GCSEEEEEETTSEEEEEECCTTSCCCEEE---EECCTTCEEEEEECCCC------------C
T ss_pred CCcceEEEEeCCCC----CCCEEEEecCCCcEEEEecCCCCceeeEE---ecCCCCceEEEEEcCcccc--ccccccCCC
Confidence 46788899886431 14689999999999999987542222221 1111122222222110000 000000001
Q ss_pred CceEEEEEecCceEEEEEEeC
Q psy14552 237 GNLYLYVGLQNGALLRMVVDQ 257 (290)
Q Consensus 237 ~~~~L~iGl~dG~l~~~~~d~ 257 (290)
...+|+.|..||.+.-|.+..
T Consensus 171 ~~~~l~~~~~dg~i~i~d~~~ 191 (379)
T 3jrp_A 171 ESRKFVTGGADNLVKIWKYNS 191 (379)
T ss_dssp TTCEEEEEETTSCEEEEEEET
T ss_pred CCCEEEEEeCCCeEEEEEecC
Confidence 345699999999999888754
No 7
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=97.51 E-value=0.04 Score=47.76 Aligned_cols=148 Identities=10% Similarity=0.138 Sum_probs=90.8
Q ss_pred ceEEEEeec--CceEEEEeeCCeEEEEEecCCCceec-C-CCceEEEE--EeCCCEEEEEEeCCeEEEEEEcCCCCCcee
Q psy14552 77 KKIVRCAVN--QRQIVIALQGGRLIYFEMHPVSDKKE-S-DKKKIVRC--AVNQRQIVIALQGGRLIYFEMHPETGILDE 150 (290)
Q Consensus 77 ~~Iv~as~n--~~qv~ial~~g~i~~~~~~~~~~~~~-~-~~~~Ii~a--s~~~~~l~Val~~~~i~~l~l~~~~~~l~~ 150 (290)
..|...+.+ ..+++.+..+|.|..+.+........ . ....+.+. +.++..++.+..++.|+++.+.. +.
T Consensus 142 ~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~--~~--- 216 (337)
T 1gxr_A 142 PACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLRE--GR--- 216 (337)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT--TE---
T ss_pred CceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCC--Cc---
Confidence 345555543 56777787888888877653221111 1 12224332 44566788888899999998765 22
Q ss_pred eeeeeecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEecCCcceEEEEEEecCCCCCCCCCC
Q psy14552 151 CSETIQMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEP 230 (290)
Q Consensus 151 ~~~~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~~~~~~~~~~~~~~~ 230 (290)
.......+..+.++++.+. ..++++|..||.+.+|.+..... .....-...+.++...
T Consensus 217 ~~~~~~~~~~v~~~~~s~~------~~~l~~~~~~~~i~~~~~~~~~~---~~~~~~~~~v~~~~~~------------- 274 (337)
T 1gxr_A 217 QLQQHDFTSQIFSLGYCPT------GEWLAVGMESSNVEVLHVNKPDK---YQLHLHESCVLSLKFA------------- 274 (337)
T ss_dssp EEEEEECSSCEEEEEECTT------SSEEEEEETTSCEEEEETTSSCE---EEECCCSSCEEEEEEC-------------
T ss_pred eEeeecCCCceEEEEECCC------CCEEEEEcCCCcEEEEECCCCCe---EEEcCCccceeEEEEC-------------
Confidence 2234556788888888643 47899999999999999864321 1111111222333322
Q ss_pred CCCccCCceEEEEEecCceEEEEEEe
Q psy14552 231 AGPVTLGNLYLYVGLQNGALLRMVVD 256 (290)
Q Consensus 231 ~~~~~~~~~~L~iGl~dG~l~~~~~d 256 (290)
....+|+.|-.||.+.-|.+.
T Consensus 275 -----~~~~~l~~~~~dg~i~~~~~~ 295 (337)
T 1gxr_A 275 -----YCGKWFVSTGKDNLLNAWRTP 295 (337)
T ss_dssp -----TTSSEEEEEETTSEEEEEETT
T ss_pred -----CCCCEEEEecCCCcEEEEECC
Confidence 123368999999998888653
No 8
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=97.38 E-value=0.011 Score=52.02 Aligned_cols=153 Identities=9% Similarity=0.115 Sum_probs=90.7
Q ss_pred ceEEEEeec------CceEEEEeeCCeEEEEEecCCCceec------C-CCceEEEE--EeC----CCEEEEEEeCCeEE
Q psy14552 77 KKIVRCAVN------QRQIVIALQGGRLIYFEMHPVSDKKE------S-DKKKIVRC--AVN----QRQIVIALQGGRLI 137 (290)
Q Consensus 77 ~~Iv~as~n------~~qv~ial~~g~i~~~~~~~~~~~~~------~-~~~~Ii~a--s~~----~~~l~Val~~~~i~ 137 (290)
..|.+++.+ +.+++.+..+|.|..+.+.....+.. + ....+.++ +.+ +..++.|..|+.|+
T Consensus 19 ~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~ 98 (366)
T 3k26_A 19 QPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIR 98 (366)
T ss_dssp SCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEE
T ss_pred CceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEE
Confidence 456666665 45677777778877777653322111 1 11224333 333 33588888899999
Q ss_pred EEEEcCCCCCceeeeeeee-cCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEecCCcceEEEE
Q psy14552 138 YFEMHPETGILDECSETIQ-MESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVM 216 (290)
Q Consensus 138 ~l~l~~~~~~l~~~~~~~~-l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~ 216 (290)
++.+.. +.. ..... -...|.++++.+. ...++++|..||.|.+|.+.....+... ..+..-...+.-
T Consensus 99 v~d~~~--~~~---~~~~~~~~~~i~~~~~~~~-----~~~~l~s~~~dg~i~iwd~~~~~~~~~~--~~~~~~~~~v~~ 166 (366)
T 3k26_A 99 IINPIT--MQC---IKHYVGHGNAINELKFHPR-----DPNLLLSVSKDHALRLWNIQTDTLVAIF--GGVEGHRDEVLS 166 (366)
T ss_dssp EECTTT--CCE---EEEEESCCSCEEEEEECSS-----CTTEEEEEETTSCEEEEETTTTEEEEEE--CSTTSCSSCEEE
T ss_pred EEEchh--ceE---eeeecCCCCcEEEEEECCC-----CCCEEEEEeCCCeEEEEEeecCeEEEEe--cccccccCceeE
Confidence 998764 322 12232 5678999998753 2568999999999999998643222221 111222222333
Q ss_pred EEecCCCCCCCCCCCCCccCCceEEEEEecCceEEEEEEe
Q psy14552 217 IEMGASDPTSSDEPAGPVTLGNLYLYVGLQNGALLRMVVD 256 (290)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~L~iGl~dG~l~~~~~d 256 (290)
+.+. ....+|+.|-.||.+.-|.+.
T Consensus 167 ~~~~---------------~~~~~l~~~~~dg~i~i~d~~ 191 (366)
T 3k26_A 167 ADYD---------------LLGEKIMSCGMDHSLKLWRIN 191 (366)
T ss_dssp EEEC---------------TTSSEEEEEETTSCEEEEESC
T ss_pred EEEC---------------CCCCEEEEecCCCCEEEEECC
Confidence 3331 123368999999999988764
No 9
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=97.26 E-value=0.042 Score=48.52 Aligned_cols=147 Identities=10% Similarity=0.122 Sum_probs=86.9
Q ss_pred CceEEEEeeCCeEEEEEecCCC--ceec-C-CCceEEEE--EeCCCEEEEEEeCCeEEEEEEcCCCCCceeeeeeeecCc
Q psy14552 86 QRQIVIALQGGRLIYFEMHPVS--DKKE-S-DKKKIVRC--AVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQMES 159 (290)
Q Consensus 86 ~~qv~ial~~g~i~~~~~~~~~--~~~~-~-~~~~Ii~a--s~~~~~l~Val~~~~i~~l~l~~~~~~l~~~~~~~~l~~ 159 (290)
..+++.+..+|.|..+.++... .... . ....+.+. +.++..++.+..|+.|+++.+.. +.+...........
T Consensus 20 ~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~--~~~~~~~~~~~~~~ 97 (372)
T 1k8k_C 20 RTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKG--RTWKPTLVILRINR 97 (372)
T ss_dssp SSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEET--TEEEEEEECCCCSS
T ss_pred CCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCC--CeeeeeEEeecCCC
Confidence 4556666677888777665321 1111 1 12224333 45677788888899999998865 32222211123467
Q ss_pred ceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEecCCcceEEEEEEecCCCCCCCCCCCCCccCCce
Q psy14552 160 EVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAGPVTLGNL 239 (290)
Q Consensus 160 ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (290)
.|.++++.+. ..++++|..||.+.+|.++.............+ -...+.-+.+. ....
T Consensus 98 ~v~~~~~~~~------~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~-~~~~i~~~~~~---------------~~~~ 155 (372)
T 1k8k_C 98 AARCVRWAPN------EKKFAVGSGSRVISICYFEQENDWWVCKHIKKP-IRSTVLSLDWH---------------PNSV 155 (372)
T ss_dssp CEEEEEECTT------SSEEEEEETTSSEEEEEEETTTTEEEEEEECTT-CCSCEEEEEEC---------------TTSS
T ss_pred ceeEEEECCC------CCEEEEEeCCCEEEEEEecCCCcceeeeeeecc-cCCCeeEEEEc---------------CCCC
Confidence 7889988642 478999999999999998754433222222111 12222223331 1234
Q ss_pred EEEEEecCceEEEEEEe
Q psy14552 240 YLYVGLQNGALLRMVVD 256 (290)
Q Consensus 240 ~L~iGl~dG~l~~~~~d 256 (290)
+|+.|..||.+.-|.+.
T Consensus 156 ~l~~~~~dg~i~~~d~~ 172 (372)
T 1k8k_C 156 LLAAGSCDFKCRIFSAY 172 (372)
T ss_dssp EEEEEETTSCEEEEECC
T ss_pred EEEEEcCCCCEEEEEcc
Confidence 68999999999888753
No 10
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=97.24 E-value=0.051 Score=48.69 Aligned_cols=117 Identities=10% Similarity=0.142 Sum_probs=72.9
Q ss_pred CceEEEEeecCceEEEEeeCCeEEEEEecCCC------ceec--CCCceEEEE--EeC----C---CEEEEEEeCCeEEE
Q psy14552 76 KKKIVRCAVNQRQIVIALQGGRLIYFEMHPVS------DKKE--SDKKKIVRC--AVN----Q---RQIVIALQGGRLIY 138 (290)
Q Consensus 76 ~~~Iv~as~n~~qv~ial~~g~i~~~~~~~~~------~~~~--~~~~~Ii~a--s~~----~---~~l~Val~~~~i~~ 138 (290)
...|.+++.+.++++.+..+|.|..+.+.... .... .....+.+. +.+ + ..++.+..|+.|++
T Consensus 16 ~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~i 95 (397)
T 1sq9_A 16 DADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLF 95 (397)
T ss_dssp SSCEEEEEECSSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEE
T ss_pred hcCeEEEEecCCeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEE
Confidence 45677888888888888889999888876433 1111 112223222 344 5 56777778999999
Q ss_pred EEEcCCCCC-ceeeeeeee-c-----CcceeEEEeeeCCCCCccccE-EEEEeCCCeEEEEEeCC
Q psy14552 139 FEMHPETGI-LDECSETIQ-M-----ESEVLCMALSNAPSGEQMSRF-LAVGLADNTVRLISLAP 195 (290)
Q Consensus 139 l~l~~~~~~-l~~~~~~~~-l-----~~ei~~l~i~~~~~~~~~~~~-l~VGl~dg~v~i~~l~~ 195 (290)
+.+... .. ......... . ...|.++++.+... ....+ +++|..||.+.+|.+..
T Consensus 96 w~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~~~l~~~~~dg~i~iwd~~~ 157 (397)
T 1sq9_A 96 YRITRE-DETKKVIFEKLDLLDSDMKKHSFWALKWGASND--RLLSHRLVATDVKGTTYIWKFHP 157 (397)
T ss_dssp EEEEEC-TTTCCEEEEEECCSCTTGGGSCEEEEEEECCC------CEEEEEEETTSCEEEEEEES
T ss_pred EEccCC-cccccccceeecccccccCCCcEEEEEEeeccC--CCCceEEEEEeCCCcEEEEeCCc
Confidence 988752 11 000011222 2 37899999972210 02467 99999999999999875
No 11
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=97.24 E-value=0.091 Score=46.07 Aligned_cols=148 Identities=11% Similarity=0.089 Sum_probs=85.2
Q ss_pred eecCceEEEEeeCCeEEEEEecCCCceec-CCC-ceEEEE--EeCCCEEEEEEeCCeEEEEEEcCCCCCceeeeeeeecC
Q psy14552 83 AVNQRQIVIALQGGRLIYFEMHPVSDKKE-SDK-KKIVRC--AVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQME 158 (290)
Q Consensus 83 s~n~~qv~ial~~g~i~~~~~~~~~~~~~-~~~-~~Ii~a--s~~~~~l~Val~~~~i~~l~l~~~~~~l~~~~~~~~l~ 158 (290)
+.+.++++.+-.+|.|....+........ ..+ ..+.+. +.++..++.|..|++|++..+... ..+.... ..-.
T Consensus 64 ~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~-~~~~~~~--~~h~ 140 (304)
T 2ynn_A 64 IARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN-WALEQTF--EGHE 140 (304)
T ss_dssp EGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGT-TEEEEEE--CCCC
T ss_pred eCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCC-cchhhhh--cccC
Confidence 33467788888888888777654322111 111 223222 455667888888999999988752 1221111 1234
Q ss_pred cceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEecCCcceEEEEEEecCCCCCCCCCCCCCccCCc
Q psy14552 159 SEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAGPVTLGN 238 (290)
Q Consensus 159 ~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~~~ 238 (290)
..|.++++.+.+ ..+++.|..||.|.+|.+.......... ......+..+.+... ...
T Consensus 141 ~~v~~v~~~p~~-----~~~l~sgs~D~~v~iwd~~~~~~~~~~~----~~~~~~v~~~~~~~~-------------~~~ 198 (304)
T 2ynn_A 141 HFVMCVAFNPKD-----PSTFASGCLDRTVKVWSLGQSTPNFTLT----TGQERGVNYVDYYPL-------------PDK 198 (304)
T ss_dssp SCEEEEEECTTC-----TTEEEEEETTSEEEEEETTCSSCSEEEE----CCCTTCEEEEEECCS-------------TTC
T ss_pred CcEEEEEECCCC-----CCEEEEEeCCCeEEEEECCCCCccceec----cCCcCcEEEEEEEEc-------------CCC
Confidence 668899887532 4689999999999999986432211111 111122222222111 233
Q ss_pred eEEEEEecCceEEEEEE
Q psy14552 239 LYLYVGLQNGALLRMVV 255 (290)
Q Consensus 239 ~~L~iGl~dG~l~~~~~ 255 (290)
.+|..|-.||.+.-+.+
T Consensus 199 ~~l~s~s~D~~i~iWd~ 215 (304)
T 2ynn_A 199 PYMITASDDLTIKIWDY 215 (304)
T ss_dssp CEEEEEETTSEEEEEET
T ss_pred CEEEEEcCCCeEEEEeC
Confidence 46888888888776644
No 12
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=97.20 E-value=0.094 Score=47.51 Aligned_cols=150 Identities=14% Similarity=0.122 Sum_probs=90.1
Q ss_pred EEEEee-cCceEEEEeeCCeEEEEEecCCCceec-----CCCc-eEEEE--EeCCCEEEEEEeCCeEEEEEEcCCCCCce
Q psy14552 79 IVRCAV-NQRQIVIALQGGRLIYFEMHPVSDKKE-----SDKK-KIVRC--AVNQRQIVIALQGGRLIYFEMHPETGILD 149 (290)
Q Consensus 79 Iv~as~-n~~qv~ial~~g~i~~~~~~~~~~~~~-----~~~~-~Ii~a--s~~~~~l~Val~~~~i~~l~l~~~~~~l~ 149 (290)
|..++. .+.+++.+..+|.|....++....... ..+. .|.+. +.++..++.|..|++|++..+.. +..
T Consensus 85 v~~~~~s~d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~--~~~- 161 (344)
T 4gqb_B 85 VADLTWVGERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQ--QVV- 161 (344)
T ss_dssp EEEEEEETTTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT--TEE-
T ss_pred EEEEEEeCCCeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCC--CcE-
Confidence 444443 478899999999998887754322111 1122 23222 45667788888899999998765 322
Q ss_pred eeeeeee-cCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEecCCcceEEEEEEecCCCCCCCC
Q psy14552 150 ECSETIQ-MESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSD 228 (290)
Q Consensus 150 ~~~~~~~-l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~~~~~~~~~~~~~ 228 (290)
..... -...|.++++.+. ...+++.|..||.|.+|.+........+....-+..+.++....
T Consensus 162 --~~~~~~h~~~V~~~~~~~~-----~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p---------- 224 (344)
T 4gqb_B 162 --LSSYRAHAAQVTCVAASPH-----KDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHP---------- 224 (344)
T ss_dssp --EEEECCCSSCEEEEEECSS-----CTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECS----------
T ss_pred --EEEEcCcCCceEEEEecCC-----CCCceeeeccccccccccccccceeeeeecceeeccceeeeecC----------
Confidence 22222 3567888888653 24578888999999999986433333332111122333433321
Q ss_pred CCCCCccCCceEEEEEecCceEEEEEE
Q psy14552 229 EPAGPVTLGNLYLYVGLQNGALLRMVV 255 (290)
Q Consensus 229 ~~~~~~~~~~~~L~iGl~dG~l~~~~~ 255 (290)
.+..+|..|-.||.+.-|.+
T Consensus 225 -------~~~~~l~sg~~dg~v~~wd~ 244 (344)
T 4gqb_B 225 -------QQSEVFVFGDENGTVSLVDT 244 (344)
T ss_dssp -------SCTTEEEEEETTSEEEEEES
T ss_pred -------CCCcceEEeccCCcEEEEEC
Confidence 23445788999999876644
No 13
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=97.19 E-value=0.11 Score=45.97 Aligned_cols=138 Identities=15% Similarity=0.128 Sum_probs=82.3
Q ss_pred EEEeCCCEEEEEE-eCCeEEEEEEcCCCCCceeeeeee-ecC------cceeEEEeeeCCCCCccccEEEEEe-CCCeEE
Q psy14552 119 RCAVNQRQIVIAL-QGGRLIYFEMHPETGILDECSETI-QME------SEVLCMALSNAPSGEQMSRFLAVGL-ADNTVR 189 (290)
Q Consensus 119 ~as~~~~~l~Val-~~~~i~~l~l~~~~~~l~~~~~~~-~l~------~ei~~l~i~~~~~~~~~~~~l~VGl-~dg~v~ 189 (290)
+.+.++..++++. .++.+.++.++..++.+... ... ..+ ..+..+++.+. ..+|++.. .++.+.
T Consensus 193 ~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~i~~spd------G~~l~v~~~~~~~v~ 265 (347)
T 3hfq_A 193 VFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQL-GIVKTIPADYTAHNGAAAIRLSHD------GHFLYVSNRGYNTLA 265 (347)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEEETTTTEEEEE-EEEESSCTTCCSCCEEEEEEECTT------SCEEEEEEETTTEEE
T ss_pred EECCCCCEEEEEeCCCCEEEEEEecCCCCceEEe-eeeeecCCCCCCCCcceeEEECCC------CCEEEEEeCCCCEEE
Confidence 3356666677765 37788888887533444322 122 233 33666777542 35675554 589999
Q ss_pred EEEeCCCCceeEeeEEec-CCcceEEEEEEecCCCCCCCCCCCCCccCCceEEEEEec-CceEEEEEEeCCCCcccccce
Q psy14552 190 LISLAPQDCLKQKNLQGL-PDLAESLVMIEMGASDPTSSDEPAGPVTLGNLYLYVGLQ-NGALLRMVVDQTSGDLSDNRM 267 (290)
Q Consensus 190 i~~l~~~~~l~~~~~~~L-~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~~~~~L~iGl~-dG~l~~~~~d~~~~~l~~~~~ 267 (290)
+|.+++...++.+..... +..|..+.+.. ++. +|+++-. +|.+.-|.+|..+|.+.....
T Consensus 266 v~~~~~~g~~~~~~~~~~~~~~~~~~~~sp-----------------dg~-~l~v~~~~~~~v~v~~~d~~tg~l~~~~~ 327 (347)
T 3hfq_A 266 VFAVTADGHLTLIQQISTEGDFPRDFDLDP-----------------TEA-FVVVVNQNTDNATLYARDLTSGKLSLLQK 327 (347)
T ss_dssp EEEECGGGCEEEEEEEECSSSCCCEEEECT-----------------TSS-EEEEEETTTTEEEEEEECTTTCCEEEEEE
T ss_pred EEEECCCCcEEEeEEEecCCCCcCeEEECC-----------------CCC-EEEEEEcCCCcEEEEEEeCCCCeEEeccc
Confidence 999975444555544443 34677776542 333 5777765 588888999999998764332
Q ss_pred EEecCcceEEEEEE
Q psy14552 268 RYLGSRPVKLFKIR 281 (290)
Q Consensus 268 ~~lG~~pv~l~~~~ 281 (290)
..--..|..++.++
T Consensus 328 ~~~~p~p~~~~~~~ 341 (347)
T 3hfq_A 328 DVTVPEGVCVRFLE 341 (347)
T ss_dssp EEECTTEEEEEECC
T ss_pred ceecCCCcEEEehh
Confidence 22224555555443
No 14
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=97.18 E-value=0.11 Score=45.77 Aligned_cols=164 Identities=12% Similarity=0.057 Sum_probs=95.2
Q ss_pred CCceEEEEeec----CceEEEEeeCCeEEEEEecCCCcee---c-CCCceEEEE--Ee-------------CCCEEEEEE
Q psy14552 75 DKKKIVRCAVN----QRQIVIALQGGRLIYFEMHPVSDKK---E-SDKKKIVRC--AV-------------NQRQIVIAL 131 (290)
Q Consensus 75 ~~~~Iv~as~n----~~qv~ial~~g~i~~~~~~~~~~~~---~-~~~~~Ii~a--s~-------------~~~~l~Val 131 (290)
....|.+++.+ ..+++.+..+|.|..+.+....... . .....+.+. +. ++..++.+.
T Consensus 100 ~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 179 (379)
T 3jrp_A 100 HSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGG 179 (379)
T ss_dssp CSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEE
T ss_pred CCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEe
Confidence 34556666666 4578888889999888775432111 1 112223222 22 356688888
Q ss_pred eCCeEEEEEEcCCCCCceeeeeeee-cCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEecCCc
Q psy14552 132 QGGRLIYFEMHPETGILDECSETIQ-MESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDL 210 (290)
Q Consensus 132 ~~~~i~~l~l~~~~~~l~~~~~~~~-l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~~~ 210 (290)
.|+.|+++.+... ........... -...|.++++.+.. ....++++|..||.+.+|.+.................
T Consensus 180 ~dg~i~i~d~~~~-~~~~~~~~~~~~h~~~v~~~~~sp~~---~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 255 (379)
T 3jrp_A 180 ADNLVKIWKYNSD-AQTYVLESTLEGHSDWVRDVAWSPTV---LLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKF 255 (379)
T ss_dssp TTSCEEEEEEETT-TTEEEEEEEECCCSSCEEEEEECCCC---SSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCC
T ss_pred CCCeEEEEEecCC-CcceeeEEEEecccCcEeEEEECCCC---CCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccC
Confidence 8999999988752 11111111122 35678888886531 0147899999999999999875321111111111112
Q ss_pred ceEEEEEEecCCCCCCCCCCCCCccCCceEEEEEecCceEEEEEEeC
Q psy14552 211 AESLVMIEMGASDPTSSDEPAGPVTLGNLYLYVGLQNGALLRMVVDQ 257 (290)
Q Consensus 211 p~Sl~~~~~~~~~~~~~~~~~~~~~~~~~~L~iGl~dG~l~~~~~d~ 257 (290)
+..+.-+.+. ....+|+.|-.||.+.-|.++.
T Consensus 256 ~~~v~~~~~s---------------~~g~~l~~~~~dg~i~iw~~~~ 287 (379)
T 3jrp_A 256 PDVLWRASWS---------------LSGNVLALSGGDNKVTLWKENL 287 (379)
T ss_dssp SSCEEEEEEC---------------SSSCCEEEEESSSSEEEEEEEE
T ss_pred CCcEEEEEEc---------------CCCCEEEEecCCCcEEEEeCCC
Confidence 2333333332 1223588899999999998863
No 15
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=97.09 E-value=0.059 Score=48.01 Aligned_cols=153 Identities=12% Similarity=0.114 Sum_probs=92.0
Q ss_pred ceEEEEeec---CceEEEEeeCCeEEEEEecCCCc---eec------------CCCceEEEEE--e-CCCEEEEEEeCCe
Q psy14552 77 KKIVRCAVN---QRQIVIALQGGRLIYFEMHPVSD---KKE------------SDKKKIVRCA--V-NQRQIVIALQGGR 135 (290)
Q Consensus 77 ~~Iv~as~n---~~qv~ial~~g~i~~~~~~~~~~---~~~------------~~~~~Ii~as--~-~~~~l~Val~~~~ 135 (290)
..|.+++.+ ..+++.+..+|.|..+.+..... ... .....+.+.+ . ++..++.+..|+.
T Consensus 44 ~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~ 123 (408)
T 4a11_B 44 GGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKT 123 (408)
T ss_dssp SCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSE
T ss_pred CcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCe
Confidence 455555553 46677777788888887754221 110 0222233333 3 3445777777999
Q ss_pred EEEEEEcCCCCCceeeeeeeecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEecCCcceEEE
Q psy14552 136 LIYFEMHPETGILDECSETIQMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLV 215 (290)
Q Consensus 136 i~~l~l~~~~~~l~~~~~~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~ 215 (290)
|+++.+.. +. .......+..+.++.+.+... ...++++|..||.+.+|.+.....+.... .-.....++.
T Consensus 124 i~iwd~~~--~~---~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~v~~~d~~~~~~~~~~~--~~~~~v~~~~ 193 (408)
T 4a11_B 124 LKVWDTNT--LQ---TADVFNFEETVYSHHMSPVST---KHCLVAVGTRGPKVQLCDLKSGSCSHILQ--GHRQEILAVS 193 (408)
T ss_dssp EEEEETTT--TE---EEEEEECSSCEEEEEECSSCS---SCCEEEEEESSSSEEEEESSSSCCCEEEC--CCCSCEEEEE
T ss_pred EEEeeCCC--Cc---cceeccCCCceeeeEeecCCC---CCcEEEEEcCCCeEEEEeCCCcceeeeec--CCCCcEEEEE
Confidence 99998875 22 223455778888888876532 25689999999999999986443332221 1111223332
Q ss_pred EEEecCCCCCCCCCCCCCccCCceEEEEEecCceEEEEEEe
Q psy14552 216 MIEMGASDPTSSDEPAGPVTLGNLYLYVGLQNGALLRMVVD 256 (290)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~L~iGl~dG~l~~~~~d 256 (290)
... .+...|..|-.||.+.-|.+.
T Consensus 194 ~~~-----------------~~~~ll~~~~~dg~i~i~d~~ 217 (408)
T 4a11_B 194 WSP-----------------RYDYILATASADSRVKLWDVR 217 (408)
T ss_dssp ECS-----------------SCTTEEEEEETTSCEEEEETT
T ss_pred ECC-----------------CCCcEEEEEcCCCcEEEEECC
Confidence 221 233347899999999888764
No 16
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.05 E-value=0.19 Score=46.26 Aligned_cols=148 Identities=10% Similarity=0.178 Sum_probs=91.6
Q ss_pred CceEEEEeecCceEEEEeeCCeEEEEEecCCCce-ecCCC-ceEEEEEeCCCEEEEEEeCCeEEEEEEcCCCCCceeeee
Q psy14552 76 KKKIVRCAVNQRQIVIALQGGRLIYFEMHPVSDK-KESDK-KKIVRCAVNQRQIVIALQGGRLIYFEMHPETGILDECSE 153 (290)
Q Consensus 76 ~~~Iv~as~n~~qv~ial~~g~i~~~~~~~~~~~-~~~~~-~~Ii~as~~~~~l~Val~~~~i~~l~l~~~~~~l~~~~~ 153 (290)
...|.+.+.++.+++.+..+|.|..+.+...... ....+ ..+.+.+.++..++.|..|+.|+++.+.. +... .
T Consensus 133 ~~~v~~~~~d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~--~~~~---~ 207 (435)
T 1p22_A 133 SKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVWDVNT--GEML---N 207 (435)
T ss_dssp CCCEEEEECCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEESSS--CCEE---E
T ss_pred CCcEEEEEECCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEECCCEEEEEcCCCeEEEEECCC--CcEE---E
Confidence 3457777888889999999999988776532211 11222 22433366777788888899999998875 3321 1
Q ss_pred ee-ecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEecCCcceEEEEEEecCCCCCCCCCCCC
Q psy14552 154 TI-QMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAG 232 (290)
Q Consensus 154 ~~-~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~~~~~~~~~~~~~~~~~ 232 (290)
.. .-...|.++++. ..++++|..||.+.+|.+.......... .+..-...+..+.+
T Consensus 208 ~~~~h~~~v~~l~~~--------~~~l~s~s~dg~i~vwd~~~~~~~~~~~--~~~~~~~~v~~~~~------------- 264 (435)
T 1p22_A 208 TLIHHCEAVLHLRFN--------NGMMVTCSKDRSIAVWDMASPTDITLRR--VLVGHRAAVNVVDF------------- 264 (435)
T ss_dssp EECCCCSCEEEEECC--------TTEEEEEETTSCEEEEECSSSSCCEEEE--EECCCSSCEEEEEE-------------
T ss_pred EEcCCCCcEEEEEEc--------CCEEEEeeCCCcEEEEeCCCCCCceeee--EecCCCCcEEEEEe-------------
Confidence 22 234567777763 3589999999999999987543332211 11111112222222
Q ss_pred CccCCceEEEEEecCceEEEEEE
Q psy14552 233 PVTLGNLYLYVGLQNGALLRMVV 255 (290)
Q Consensus 233 ~~~~~~~~L~iGl~dG~l~~~~~ 255 (290)
.+ .+|+.|-.||.+.-+.+
T Consensus 265 ---~~-~~l~s~~~dg~i~vwd~ 283 (435)
T 1p22_A 265 ---DD-KYIVSASGDRTIKVWNT 283 (435)
T ss_dssp ---ET-TEEEEEETTSEEEEEET
T ss_pred ---CC-CEEEEEeCCCeEEEEEC
Confidence 12 25899999999877754
No 17
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=97.00 E-value=0.039 Score=52.43 Aligned_cols=154 Identities=14% Similarity=0.165 Sum_probs=93.8
Q ss_pred ceEEEEeecCceEEEEee-CCeEEEEEecCCCcee--c-C-CCceEEEE--EeCCCEEEEEEeCCeEEEEEEcCCCCCce
Q psy14552 77 KKIVRCAVNQRQIVIALQ-GGRLIYFEMHPVSDKK--E-S-DKKKIVRC--AVNQRQIVIALQGGRLIYFEMHPETGILD 149 (290)
Q Consensus 77 ~~Iv~as~n~~qv~ial~-~g~i~~~~~~~~~~~~--~-~-~~~~Ii~a--s~~~~~l~Val~~~~i~~l~l~~~~~~l~ 149 (290)
..+.+.+.++.+++.+.. +|.|..+.+... .+. . . ....+.+. +.++..++.+..|+.|+++.+.. +..
T Consensus 447 ~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~-~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~--~~~- 522 (615)
T 1pgu_A 447 SPGSAVSLSQNYVAVGLEEGNTIQVFKLSDL-EVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQS--REV- 522 (615)
T ss_dssp SCEEEEEECSSEEEEEETTTSCEEEEETTEE-EEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT--TEE-
T ss_pred CCceEEEEcCCEEEEeecCCCeEEEEECCCc-cccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCC--Ccc-
Confidence 345555555777777777 888887776432 221 1 1 12234333 45677788888899999998875 221
Q ss_pred eeeeeee--cCcceeEEEeeeCCC----CCccccEEEEEeCCCeEEEEEeCCC-CceeEeeEEecCCcceEEEEEEecCC
Q psy14552 150 ECSETIQ--MESEVLCMALSNAPS----GEQMSRFLAVGLADNTVRLISLAPQ-DCLKQKNLQGLPDLAESLVMIEMGAS 222 (290)
Q Consensus 150 ~~~~~~~--l~~ei~~l~i~~~~~----~~~~~~~l~VGl~dg~v~i~~l~~~-~~l~~~~~~~L~~~p~Sl~~~~~~~~ 222 (290)
..... -...|.++++.+... ......+|++|..||.|.+|.++.. ..+.... .-.....++....
T Consensus 523 --~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~--~h~~~v~~l~~s~---- 594 (615)
T 1pgu_A 523 --KTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALN--AHKDGVNNLLWET---- 594 (615)
T ss_dssp --EECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETT--SSTTCEEEEEEEE----
T ss_pred --eeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhh--cCccceEEEEEcC----
Confidence 11222 467899999976210 0002579999999999999999753 2222210 1112334554443
Q ss_pred CCCCCCCCCCCccCCceEEEEEecCceEEEEEEeC
Q psy14552 223 DPTSSDEPAGPVTLGNLYLYVGLQNGALLRMVVDQ 257 (290)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~L~iGl~dG~l~~~~~d~ 257 (290)
.+. |+.|-.||.+.-+.++.
T Consensus 595 -------------~~~--l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 595 -------------PST--LVSSGADACIKRWNVVL 614 (615)
T ss_dssp -------------TTE--EEEEETTSCEEEEEEC-
T ss_pred -------------CCC--eEEecCCceEEEEeeec
Confidence 334 89999999999888753
No 18
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=96.97 E-value=0.16 Score=44.14 Aligned_cols=147 Identities=14% Similarity=0.156 Sum_probs=84.5
Q ss_pred EEEEeec--CceEEEEeeCCeEEEEEecCCCceec-C-CCceEEEE--EeCCCEEEEEEeCCeEEEEEEcCCCCCceeee
Q psy14552 79 IVRCAVN--QRQIVIALQGGRLIYFEMHPVSDKKE-S-DKKKIVRC--AVNQRQIVIALQGGRLIYFEMHPETGILDECS 152 (290)
Q Consensus 79 Iv~as~n--~~qv~ial~~g~i~~~~~~~~~~~~~-~-~~~~Ii~a--s~~~~~l~Val~~~~i~~l~l~~~~~~l~~~~ 152 (290)
|..++.+ ..+++.+..+|.|..+.+........ . ....+.++ +.++..++.+..|+.|+++.+.. +.. .
T Consensus 68 v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~--~~~---~ 142 (312)
T 4ery_A 68 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT--GKC---L 142 (312)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTT--CCE---E
T ss_pred eEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC--CEE---E
Confidence 4444433 55677777788887776653321111 1 11223333 34556688888899999998865 221 1
Q ss_pred eeee-cCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEecCCcceEEEEEEecCCCCCCCCCCC
Q psy14552 153 ETIQ-MESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPA 231 (290)
Q Consensus 153 ~~~~-l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~~~~~~~~~~~~~~~~ 231 (290)
.... -...+.++.+.+. ..++++|..||.+.+|.+.....+.... .-...|. ..+.+.
T Consensus 143 ~~~~~~~~~v~~~~~~~~------~~~l~~~~~d~~i~~wd~~~~~~~~~~~--~~~~~~~--~~~~~~----------- 201 (312)
T 4ery_A 143 KTLPAHSDPVSAVHFNRD------GSLIVSSSYDGLCRIWDTASGQCLKTLI--DDDNPPV--SFVKFS----------- 201 (312)
T ss_dssp EEECCCSSCEEEEEECTT------SSEEEEEETTSCEEEEETTTCCEEEEEC--CSSCCCE--EEEEEC-----------
T ss_pred EEecCCCCcEEEEEEcCC------CCEEEEEeCCCcEEEEECCCCceeeEEe--ccCCCce--EEEEEC-----------
Confidence 1222 2456888888642 4689999999999999986433222211 1111222 222321
Q ss_pred CCccCCceEEEEEecCceEEEEEE
Q psy14552 232 GPVTLGNLYLYVGLQNGALLRMVV 255 (290)
Q Consensus 232 ~~~~~~~~~L~iGl~dG~l~~~~~ 255 (290)
....+|+.|-.||.+.-|.+
T Consensus 202 ----~~~~~l~~~~~d~~i~iwd~ 221 (312)
T 4ery_A 202 ----PNGKYILAATLDNTLKLWDY 221 (312)
T ss_dssp ----TTSSEEEEEETTTEEEEEET
T ss_pred ----CCCCEEEEEcCCCeEEEEEC
Confidence 22346888999998877754
No 19
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=96.96 E-value=0.17 Score=44.21 Aligned_cols=145 Identities=8% Similarity=0.067 Sum_probs=84.6
Q ss_pred CceEEEEeeCCeEEEEEecCCCceec-C-CCceEEEE--EeCCCEEEEEEeCCeEEEEEEcCCCCCceeeeeeeecCcce
Q psy14552 86 QRQIVIALQGGRLIYFEMHPVSDKKE-S-DKKKIVRC--AVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQMESEV 161 (290)
Q Consensus 86 ~~qv~ial~~g~i~~~~~~~~~~~~~-~-~~~~Ii~a--s~~~~~l~Val~~~~i~~l~l~~~~~~l~~~~~~~~l~~ei 161 (290)
..+++.+..+|.|..+.+........ . ....+.+. +.++..++.+..|+.|+++.+.. +.. ......+..+
T Consensus 44 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~--~~~---~~~~~~~~~v 118 (369)
T 3zwl_B 44 GDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSN--GQC---VATWKSPVPV 118 (369)
T ss_dssp SCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTT--CCE---EEEEECSSCE
T ss_pred CCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC--CcE---EEEeecCCCe
Confidence 44566666677777666543221111 1 12224333 34566788888899999998875 322 2344578889
Q ss_pred eEEEeeeCCCCCccccEEEEEeCC-----CeEEEEEeCCCCceeEeeEEecC------Ccc--eEEEEEEecCCCCCCCC
Q psy14552 162 LCMALSNAPSGEQMSRFLAVGLAD-----NTVRLISLAPQDCLKQKNLQGLP------DLA--ESLVMIEMGASDPTSSD 228 (290)
Q Consensus 162 ~~l~i~~~~~~~~~~~~l~VGl~d-----g~v~i~~l~~~~~l~~~~~~~L~------~~p--~Sl~~~~~~~~~~~~~~ 228 (290)
.++++.+. ..+++++..+ |.+.+|.+.............-. ... ..+..+.+.
T Consensus 119 ~~~~~~~~------~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 184 (369)
T 3zwl_B 119 KRVEFSPC------GNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWS-------- 184 (369)
T ss_dssp EEEEECTT------SSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEEC--------
T ss_pred EEEEEccC------CCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEc--------
Confidence 99988643 5788899888 99999998644322111111100 000 123333321
Q ss_pred CCCCCccCCceEEEEEecCceEEEEEEe
Q psy14552 229 EPAGPVTLGNLYLYVGLQNGALLRMVVD 256 (290)
Q Consensus 229 ~~~~~~~~~~~~L~iGl~dG~l~~~~~d 256 (290)
....+|++|..||.+.-|.+.
T Consensus 185 -------~~~~~l~~~~~dg~i~i~d~~ 205 (369)
T 3zwl_B 185 -------TKGKYIIAGHKDGKISKYDVS 205 (369)
T ss_dssp -------GGGCEEEEEETTSEEEEEETT
T ss_pred -------CCCCEEEEEcCCCEEEEEECC
Confidence 123468999999999888653
No 20
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=96.95 E-value=0.13 Score=45.74 Aligned_cols=111 Identities=16% Similarity=0.163 Sum_probs=64.8
Q ss_pred CceEEEEeec--CceEEEEeeCCeEEEEEecCCCceec----C-CCceEEEE--EeCCCEEEEEEeCCeEEEEEEcCCCC
Q psy14552 76 KKKIVRCAVN--QRQIVIALQGGRLIYFEMHPVSDKKE----S-DKKKIVRC--AVNQRQIVIALQGGRLIYFEMHPETG 146 (290)
Q Consensus 76 ~~~Iv~as~n--~~qv~ial~~g~i~~~~~~~~~~~~~----~-~~~~Ii~a--s~~~~~l~Val~~~~i~~l~l~~~~~ 146 (290)
...|.+++.+ ..+++.+..+|.|..+.+.....|.+ . ....+.+. +.++..++.+..|+.|+++.++.. .
T Consensus 55 ~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~-~ 133 (377)
T 3dwl_C 55 DKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQE-N 133 (377)
T ss_dssp SSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----
T ss_pred CceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCc-c
Confidence 3456666655 46777777788888777654331211 1 12223333 345667888888999999877652 1
Q ss_pred Cceeeeeeee--cCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeC
Q psy14552 147 ILDECSETIQ--MESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLA 194 (290)
Q Consensus 147 ~l~~~~~~~~--l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~ 194 (290)
.. ....... ....|.++++.+. ..++++|..||.+.+|.+.
T Consensus 134 ~~-~~~~~~~~~h~~~v~~~~~~~~------~~~l~~~~~d~~i~iwd~~ 176 (377)
T 3dwl_C 134 DW-WVSKHLKRPLRSTILSLDWHPN------NVLLAAGCADRKAYVLSAY 176 (377)
T ss_dssp -C-CCCEEECSSCCSCEEEEEECTT------SSEEEEEESSSCEEEEEEC
T ss_pred cc-eeeeEeecccCCCeEEEEEcCC------CCEEEEEeCCCEEEEEEEE
Confidence 11 1112222 4567888888642 4689999999999999985
No 21
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=96.94 E-value=0.14 Score=44.71 Aligned_cols=149 Identities=9% Similarity=0.118 Sum_probs=91.3
Q ss_pred ceEEEEeecC-----ceEEEEeeCCeEEEEEecCCCcee-c---CCCceEEEE--EeCCCEEEEEEeCCeEEEEEEcCCC
Q psy14552 77 KKIVRCAVNQ-----RQIVIALQGGRLIYFEMHPVSDKK-E---SDKKKIVRC--AVNQRQIVIALQGGRLIYFEMHPET 145 (290)
Q Consensus 77 ~~Iv~as~n~-----~qv~ial~~g~i~~~~~~~~~~~~-~---~~~~~Ii~a--s~~~~~l~Val~~~~i~~l~l~~~~ 145 (290)
..|.+++.+. .+++.+..+|.|..+.+....... . .....|.+. +.++..++.+..|+.|+++.+..
T Consensus 40 ~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~-- 117 (368)
T 3mmy_A 40 DSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSS-- 117 (368)
T ss_dssp SCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTT--
T ss_pred CceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCC--
Confidence 4456666553 567777778888888776422211 1 112224333 34566788888899999998875
Q ss_pred CCceeeeeeeecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEecCCcceEEEEEEecCCCCC
Q psy14552 146 GILDECSETIQMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPT 225 (290)
Q Consensus 146 ~~l~~~~~~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~~~~~~~~~~ 225 (290)
+.. ......+..|.++++.+.. ...++++|..||.+.+|.+.....+... .... .......
T Consensus 118 ~~~---~~~~~~~~~v~~~~~~~~~----~~~~l~~~~~dg~i~vwd~~~~~~~~~~---~~~~---~~~~~~~------ 178 (368)
T 3mmy_A 118 NQA---IQIAQHDAPVKTIHWIKAP----NYSCVMTGSWDKTLKFWDTRSSNPMMVL---QLPE---RCYCADV------ 178 (368)
T ss_dssp TEE---EEEEECSSCEEEEEEEECS----SCEEEEEEETTSEEEEECSSCSSCSEEE---ECSS---CEEEEEE------
T ss_pred CCc---eeeccccCceEEEEEEeCC----CCCEEEEccCCCcEEEEECCCCcEEEEE---ecCC---CceEEEe------
Confidence 322 2234467789999984332 2468999999999999998654333332 2222 1212221
Q ss_pred CCCCCCCCccCCceEEEEEecCceEEEEEEeC
Q psy14552 226 SSDEPAGPVTLGNLYLYVGLQNGALLRMVVDQ 257 (290)
Q Consensus 226 ~~~~~~~~~~~~~~~L~iGl~dG~l~~~~~d~ 257 (290)
. ..+++++..+|.+.-|.++.
T Consensus 179 ----------~-~~~~~~~~~~~~i~~~~~~~ 199 (368)
T 3mmy_A 179 ----------I-YPMAVVATAERGLIVYQLEN 199 (368)
T ss_dssp ----------E-TTEEEEEEGGGCEEEEECSS
T ss_pred ----------c-CCeeEEEeCCCcEEEEEecc
Confidence 1 12588899999988887754
No 22
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=96.93 E-value=0.19 Score=44.64 Aligned_cols=147 Identities=13% Similarity=0.146 Sum_probs=85.1
Q ss_pred ceEEEEeec--CceEEEEeeCCeEEEEEecCCCceec-CC-CceE--EEEEeCCCEEEEEEeCCeEEEEEEcCCCCCcee
Q psy14552 77 KKIVRCAVN--QRQIVIALQGGRLIYFEMHPVSDKKE-SD-KKKI--VRCAVNQRQIVIALQGGRLIYFEMHPETGILDE 150 (290)
Q Consensus 77 ~~Iv~as~n--~~qv~ial~~g~i~~~~~~~~~~~~~-~~-~~~I--i~as~~~~~l~Val~~~~i~~l~l~~~~~~l~~ 150 (290)
..|.+++.+ ..+++.+..+|.|..+.+........ .. ...+ ++.+.++..++.|..|+.|+++.+.. +.+.
T Consensus 165 ~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~--~~~~- 241 (321)
T 3ow8_A 165 KFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQH--ANLA- 241 (321)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTT--CCEE-
T ss_pred ceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCC--ccee-
Confidence 345444443 56777777788887776543221111 11 1123 22245666788887899999998765 2221
Q ss_pred eeeeee-cCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEecCCcceEEEEEEecCCCCCCCCC
Q psy14552 151 CSETIQ-MESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDE 229 (290)
Q Consensus 151 ~~~~~~-l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~~~~~~~~~~~~~~ 229 (290)
.... -...|.++++.+. ..+|+.|..||++.+|.+.....+... ..-...+.-+.+.
T Consensus 242 --~~~~~h~~~v~~~~~sp~------~~~l~s~s~D~~v~iwd~~~~~~~~~~-----~~h~~~v~~v~~s--------- 299 (321)
T 3ow8_A 242 --GTLSGHASWVLNVAFCPD------DTHFVSSSSDKSVKVWDVGTRTCVHTF-----FDHQDQVWGVKYN--------- 299 (321)
T ss_dssp --EEECCCSSCEEEEEECTT------SSEEEEEETTSCEEEEETTTTEEEEEE-----CCCSSCEEEEEEC---------
T ss_pred --EEEcCCCCceEEEEECCC------CCEEEEEeCCCcEEEEeCCCCEEEEEE-----cCCCCcEEEEEEC---------
Confidence 1222 3456888888643 468999999999999998643222221 1111222233331
Q ss_pred CCCCccCCceEEEEEecCceEEEEE
Q psy14552 230 PAGPVTLGNLYLYVGLQNGALLRMV 254 (290)
Q Consensus 230 ~~~~~~~~~~~L~iGl~dG~l~~~~ 254 (290)
....+|+.|-.||.+.-|.
T Consensus 300 ------~~g~~l~s~~~d~~i~vwd 318 (321)
T 3ow8_A 300 ------GNGSKIVSVGDDQEIHIYD 318 (321)
T ss_dssp ------TTSSEEEEEETTCCEEEEE
T ss_pred ------CCCCEEEEEeCCCeEEEEe
Confidence 1233588888999887664
No 23
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=96.89 E-value=0.41 Score=47.95 Aligned_cols=165 Identities=14% Similarity=0.114 Sum_probs=95.9
Q ss_pred CceEEEEeec----CceEEEEeeCCeEEEEEecCCCceec----C-CCceEEEE--EeC--CCEEEEEEeCCeEEEEEEc
Q psy14552 76 KKKIVRCAVN----QRQIVIALQGGRLIYFEMHPVSDKKE----S-DKKKIVRC--AVN--QRQIVIALQGGRLIYFEMH 142 (290)
Q Consensus 76 ~~~Iv~as~n----~~qv~ial~~g~i~~~~~~~~~~~~~----~-~~~~Ii~a--s~~--~~~l~Val~~~~i~~l~l~ 142 (290)
...|.+.+.+ ..+++.+..+|.|....+... .|.. . ....|.+. +.+ +..++.|..|+.|+++.+.
T Consensus 53 ~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~-~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~ 131 (753)
T 3jro_A 53 EGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENG-RWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFK 131 (753)
T ss_dssp SSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETT-EEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECC
T ss_pred cCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCC-cccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEee
Confidence 3456666654 567777888888888877642 2211 1 22224333 334 5678888889999999887
Q ss_pred CCCCCceeeeeeeecCcceeEEEeeeCCC-------CCccccEEEEEeCCCeEEEEEeCCCCce-eEeeEEecCCcceEE
Q psy14552 143 PETGILDECSETIQMESEVLCMALSNAPS-------GEQMSRFLAVGLADNTVRLISLAPQDCL-KQKNLQGLPDLAESL 214 (290)
Q Consensus 143 ~~~~~l~~~~~~~~l~~ei~~l~i~~~~~-------~~~~~~~l~VGl~dg~v~i~~l~~~~~l-~~~~~~~L~~~p~Sl 214 (290)
.. ... ........+..|.++.+.+... ......++++|..||.|.+|.+...... .... .+..-...+
T Consensus 132 ~~-~~~-~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~--~~~~h~~~V 207 (753)
T 3jro_A 132 EN-GTT-SPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLES--TLEGHSDWV 207 (753)
T ss_dssp SS-SCC-CCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEE--EECCCSSCE
T ss_pred cC-CCc-ceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeee--eecCCCCcE
Confidence 52 111 1111223567888998875310 0012578999999999999998643221 2221 222111222
Q ss_pred EEEEecCCCCCCCCCCCCCccCCceEEEEEecCceEEEEEEeC
Q psy14552 215 VMIEMGASDPTSSDEPAGPVTLGNLYLYVGLQNGALLRMVVDQ 257 (290)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~iGl~dG~l~~~~~d~ 257 (290)
.-+.+... .....+|..|-.||.+.-|.+..
T Consensus 208 ~~l~~sp~------------~~~~~~l~s~s~Dg~I~iwd~~~ 238 (753)
T 3jro_A 208 RDVAWSPT------------VLLRSYLASVSQDRTCIIWTQDN 238 (753)
T ss_dssp EEEEECCC------------CSSSEEEEEEESSSCEEEEEESS
T ss_pred EEEEeccC------------CCCCCEEEEEecCCEEEEecCCC
Confidence 22333111 01146799999999999888754
No 24
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=96.86 E-value=0.2 Score=44.55 Aligned_cols=142 Identities=11% Similarity=0.156 Sum_probs=84.2
Q ss_pred eecCceEEEEeeCCeEEEEEecCCCc-eec-CCCceEEEE--EeCCCEEEEEEeCCeEEEEEEcCCCCCceeeeeeee-c
Q psy14552 83 AVNQRQIVIALQGGRLIYFEMHPVSD-KKE-SDKKKIVRC--AVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQ-M 157 (290)
Q Consensus 83 s~n~~qv~ial~~g~i~~~~~~~~~~-~~~-~~~~~Ii~a--s~~~~~l~Val~~~~i~~l~l~~~~~~l~~~~~~~~-l 157 (290)
+-+..+++.+..+|.+..+.+..... +.. ..+..+.+. +.++..++.+..|+.|+++.+.. +.+ ..... -
T Consensus 131 spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~--~~~---~~~~~~h 205 (321)
T 3ow8_A 131 SPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIAT--GKL---LHTLEGH 205 (321)
T ss_dssp CTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTT--TEE---EEEECCC
T ss_pred CCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCC--CcE---EEEEccc
Confidence 33456677777778887776643321 111 122223333 45677788888899999998765 322 12222 3
Q ss_pred CcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEecCCcceEEEEEEecCCCCCCCCCCCCCccCC
Q psy14552 158 ESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAGPVTLG 237 (290)
Q Consensus 158 ~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~~ 237 (290)
...|.++++.+. ..+|+.|..||.|.+|.+........ +..-...+.-+.+. ..
T Consensus 206 ~~~v~~l~~spd------~~~l~s~s~dg~i~iwd~~~~~~~~~-----~~~h~~~v~~~~~s---------------p~ 259 (321)
T 3ow8_A 206 AMPIRSLTFSPD------SQLLVTASDDGYIKIYDVQHANLAGT-----LSGHASWVLNVAFC---------------PD 259 (321)
T ss_dssp SSCCCEEEECTT------SCEEEEECTTSCEEEEETTTCCEEEE-----ECCCSSCEEEEEEC---------------TT
T ss_pred CCceeEEEEcCC------CCEEEEEcCCCeEEEEECCCcceeEE-----EcCCCCceEEEEEC---------------CC
Confidence 456888888642 46899999999999999864322221 22111122223331 12
Q ss_pred ceEEEEEecCceEEEEEE
Q psy14552 238 NLYLYVGLQNGALLRMVV 255 (290)
Q Consensus 238 ~~~L~iGl~dG~l~~~~~ 255 (290)
..+|+.|-.||.+.-+.+
T Consensus 260 ~~~l~s~s~D~~v~iwd~ 277 (321)
T 3ow8_A 260 DTHFVSSSSDKSVKVWDV 277 (321)
T ss_dssp SSEEEEEETTSCEEEEET
T ss_pred CCEEEEEeCCCcEEEEeC
Confidence 336889999999887755
No 25
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=96.82 E-value=0.13 Score=45.10 Aligned_cols=141 Identities=11% Similarity=0.149 Sum_probs=81.8
Q ss_pred CceEEEEeeCCeEEEEEecCCCceec--CCCceEEEE--EeCCCEEEEEEeCCeEEEEEEcCCCCCceeeeeee-ecCcc
Q psy14552 86 QRQIVIALQGGRLIYFEMHPVSDKKE--SDKKKIVRC--AVNQRQIVIALQGGRLIYFEMHPETGILDECSETI-QMESE 160 (290)
Q Consensus 86 ~~qv~ial~~g~i~~~~~~~~~~~~~--~~~~~Ii~a--s~~~~~l~Val~~~~i~~l~l~~~~~~l~~~~~~~-~l~~e 160 (290)
.++++.+..+|.|....+........ .....+.++ +.++..++.|..|++|+++.+.. +.. .... .-+..
T Consensus 25 ~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~--~~~---~~~~~~h~~~ 99 (304)
T 2ynn_A 25 EPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNT--GEK---VVDFEAHPDY 99 (304)
T ss_dssp SSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTT--CCE---EEEEECCSSC
T ss_pred CCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCC--CcE---EEEEeCCCCc
Confidence 45556666677777665543211111 111123222 45677888888899999998765 321 1122 24567
Q ss_pred eeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEecCCcceEEEEEEecCCCCCCCCCCCCCccCCceE
Q psy14552 161 VLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAGPVTLGNLY 240 (290)
Q Consensus 161 i~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (290)
|.++++.+. ..+++.|..||+|.+|.+.....+.. .+..-...+.-+.+.. .+..+
T Consensus 100 v~~~~~~~~------~~~l~sgs~D~~v~lWd~~~~~~~~~----~~~~h~~~v~~v~~~p--------------~~~~~ 155 (304)
T 2ynn_A 100 IRSIAVHPT------KPYVLSGSDDLTVKLWNWENNWALEQ----TFEGHEHFVMCVAFNP--------------KDPST 155 (304)
T ss_dssp EEEEEECSS------SSEEEEEETTSCEEEEEGGGTTEEEE----EECCCCSCEEEEEECT--------------TCTTE
T ss_pred EEEEEEcCC------CCEEEEECCCCeEEEEECCCCcchhh----hhcccCCcEEEEEECC--------------CCCCE
Confidence 889988643 46899999999999999864322211 1111112222233311 12335
Q ss_pred EEEEecCceEEEEEE
Q psy14552 241 LYVGLQNGALLRMVV 255 (290)
Q Consensus 241 L~iGl~dG~l~~~~~ 255 (290)
|..|-.||.+.-+.+
T Consensus 156 l~sgs~D~~v~iwd~ 170 (304)
T 2ynn_A 156 FASGCLDRTVKVWSL 170 (304)
T ss_dssp EEEEETTSEEEEEET
T ss_pred EEEEeCCCeEEEEEC
Confidence 888889998887765
No 26
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=96.80 E-value=0.22 Score=43.20 Aligned_cols=150 Identities=15% Similarity=0.207 Sum_probs=85.1
Q ss_pred eEEEEeec--CceEEEEeeCCeEEEEEecCCCceec-CC-CceEEEE--EeCCCEEEEEEeCCeEEEEEEcCCCCCceee
Q psy14552 78 KIVRCAVN--QRQIVIALQGGRLIYFEMHPVSDKKE-SD-KKKIVRC--AVNQRQIVIALQGGRLIYFEMHPETGILDEC 151 (290)
Q Consensus 78 ~Iv~as~n--~~qv~ial~~g~i~~~~~~~~~~~~~-~~-~~~Ii~a--s~~~~~l~Val~~~~i~~l~l~~~~~~l~~~ 151 (290)
.|.+++.+ .++++.+..+|.|..+.+........ +. ...+.+. +.++..++.+..|+.|+++.+.. +..
T Consensus 109 ~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~--~~~--- 183 (312)
T 4ery_A 109 YVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS--GQC--- 183 (312)
T ss_dssp CEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT--CCE---
T ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCC--Cce---
Confidence 35555544 45677777788888777653322111 11 1223222 44566788888899999998765 221
Q ss_pred eeee--ecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEecCCcceEEEEEEecCCCCCCCCC
Q psy14552 152 SETI--QMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDE 229 (290)
Q Consensus 152 ~~~~--~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~~~~~~~~~~~~~~ 229 (290)
.... .-...+.++++.+. ..++++|..||.+.+|.+.....+.... .-......+... +.
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~------~~~l~~~~~d~~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~-~~--------- 245 (312)
T 4ery_A 184 LKTLIDDDNPPVSFVKFSPN------GKYILAATLDNTLKLWDYSKGKCLKTYT--GHKNEKYCIFAN-FS--------- 245 (312)
T ss_dssp EEEECCSSCCCEEEEEECTT------SSEEEEEETTTEEEEEETTTTEEEEEEC--SSCCSSSCCCEE-EE---------
T ss_pred eeEEeccCCCceEEEEECCC------CCEEEEEcCCCeEEEEECCCCcEEEEEE--ecCCceEEEEEE-EE---------
Confidence 1112 12345777777642 4789999999999999986432222211 000111111111 10
Q ss_pred CCCCccCCceEEEEEecCceEEEEEE
Q psy14552 230 PAGPVTLGNLYLYVGLQNGALLRMVV 255 (290)
Q Consensus 230 ~~~~~~~~~~~L~iGl~dG~l~~~~~ 255 (290)
..+..+|..|-.||.+.-|.+
T Consensus 246 -----~~~~~~l~sg~~dg~i~vwd~ 266 (312)
T 4ery_A 246 -----VTGGKWIVSGSEDNLVYIWNL 266 (312)
T ss_dssp -----CSSSCEEEECCTTSCEEEEET
T ss_pred -----eCCCcEEEEECCCCEEEEEEC
Confidence 123456899999999887765
No 27
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=96.79 E-value=0.17 Score=45.11 Aligned_cols=110 Identities=14% Similarity=0.202 Sum_probs=69.2
Q ss_pred CceEEEEeecCc-eEEEEeeCCeEEEEEecCCC---ceecC--C---CceEEEE--EeCCCEEEEEEeC---CeEEEEEE
Q psy14552 76 KKKIVRCAVNQR-QIVIALQGGRLIYFEMHPVS---DKKES--D---KKKIVRC--AVNQRQIVIALQG---GRLIYFEM 141 (290)
Q Consensus 76 ~~~Iv~as~n~~-qv~ial~~g~i~~~~~~~~~---~~~~~--~---~~~Ii~a--s~~~~~l~Val~~---~~i~~l~l 141 (290)
...|.+++.+.. +++.+..+|.|..+.+.... .+... . ...+.+. +.++..++++..+ +.|+++.+
T Consensus 186 ~~~i~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~ 265 (397)
T 1sq9_A 186 SQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYET 265 (397)
T ss_dssp CCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEET
T ss_pred CCCceEEEECCCceEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEEC
Confidence 344555555522 67777778888888765322 12210 1 2234333 4566778888888 89999988
Q ss_pred cCCCCCceeeeeeee--------------cCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCC
Q psy14552 142 HPETGILDECSETIQ--------------MESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQ 196 (290)
Q Consensus 142 ~~~~~~l~~~~~~~~--------------l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~ 196 (290)
.. +.... ... -...|.++++.+. ..+|++|..||.|.+|.+...
T Consensus 266 ~~--~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------~~~l~~~~~dg~i~iwd~~~~ 323 (397)
T 1sq9_A 266 EF--GERIG---SLSVPTHSSQASLGEFAHSSWVMSLSFNDS------GETLCSAGWDGKLRFWDVKTK 323 (397)
T ss_dssp TT--CCEEE---EECBC--------CCBSBSSCEEEEEECSS------SSEEEEEETTSEEEEEETTTT
T ss_pred CC--Ccccc---eeccCcccccccccccccCCcEEEEEECCC------CCEEEEEeCCCeEEEEEcCCC
Confidence 65 22111 122 3567888888642 468999999999999998643
No 28
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=96.79 E-value=0.21 Score=45.21 Aligned_cols=152 Identities=11% Similarity=0.106 Sum_probs=90.4
Q ss_pred CceEEEEee---cCceEEEEeeCCeEEEEEecCCCc--------eecC-CCceEEEE--EeCC-CEEEEEEeCCeEEEEE
Q psy14552 76 KKKIVRCAV---NQRQIVIALQGGRLIYFEMHPVSD--------KKES-DKKKIVRC--AVNQ-RQIVIALQGGRLIYFE 140 (290)
Q Consensus 76 ~~~Iv~as~---n~~qv~ial~~g~i~~~~~~~~~~--------~~~~-~~~~Ii~a--s~~~-~~l~Val~~~~i~~l~ 140 (290)
...|...+. ++.+++.+..+|.|..+.+..... .... ....+.+. +.++ ..++.+..|+.|+++.
T Consensus 81 ~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd 160 (402)
T 2aq5_A 81 TAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWD 160 (402)
T ss_dssp SSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEE
T ss_pred CCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEE
Confidence 445666666 456788888889998888764311 0001 11223222 3343 4677777899999998
Q ss_pred EcCCCCCceeeeeee---ecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEecCCcceEEEEE
Q psy14552 141 MHPETGILDECSETI---QMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMI 217 (290)
Q Consensus 141 l~~~~~~l~~~~~~~---~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~~ 217 (290)
+.. +. . .... ..+..|.++++.+. ..++++|..||.+.+|.+.....+.......-+..+.++...
T Consensus 161 ~~~--~~--~-~~~~~~~~~~~~v~~~~~~~~------~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (402)
T 2aq5_A 161 VGT--GA--A-VLTLGPDVHPDTIYSVDWSRD------GALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFV 229 (402)
T ss_dssp TTT--TE--E-EEEECTTTCCSCEEEEEECTT------SSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEEC
T ss_pred CCC--CC--c-cEEEecCCCCCceEEEEECCC------CCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEc
Confidence 875 32 1 1222 24667889988652 468899999999999998642222211000111123444332
Q ss_pred EecCCCCCCCCCCCCCccCCceEEEEE---ecCceEEEEEEe
Q psy14552 218 EMGASDPTSSDEPAGPVTLGNLYLYVG---LQNGALLRMVVD 256 (290)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~L~iG---l~dG~l~~~~~d 256 (290)
....+|.+| ..||.+.-|.+.
T Consensus 230 ------------------~~~~~l~~g~~~~~d~~i~iwd~~ 253 (402)
T 2aq5_A 230 ------------------SEGKILTTGFSRMSERQVALWDTK 253 (402)
T ss_dssp ------------------STTEEEEEEECTTCCEEEEEEETT
T ss_pred ------------------CCCcEEEEeccCCCCceEEEEcCc
Confidence 124468888 789998888653
No 29
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=96.79 E-value=0.21 Score=50.13 Aligned_cols=161 Identities=9% Similarity=0.077 Sum_probs=87.5
Q ss_pred CceEEEEeeCCeEEEEEecCCCceec----CCC-ceEEEEE--eC--CCEEEEEEeCCeEEEEEEcCCCCCceeeeeeee
Q psy14552 86 QRQIVIALQGGRLIYFEMHPVSDKKE----SDK-KKIVRCA--VN--QRQIVIALQGGRLIYFEMHPETGILDECSETIQ 156 (290)
Q Consensus 86 ~~qv~ial~~g~i~~~~~~~~~~~~~----~~~-~~Ii~as--~~--~~~l~Val~~~~i~~l~l~~~~~~l~~~~~~~~ 156 (290)
..+++.+..+|.|..+.+.. ..+.. ..+ ..|.+.+ .+ +..++.|..|+.|+++.+.. +..........
T Consensus 21 g~~latg~~dg~I~vwd~~~-~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~--~~~~~~~~~~~ 97 (753)
T 3jro_A 21 GKRLATCSSDKTIKIFEVEG-ETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEEN--GRWSQIAVHAV 97 (753)
T ss_dssp SCCEEEEETTTEEEEEEEET-TEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEET--TEEEEEEEECC
T ss_pred CCeEEEEECCCcEEEEecCC-CCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCC--CcccccccccC
Confidence 45666666778887776642 11111 112 2243333 33 56688888899999999876 32212211122
Q ss_pred cCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEecCCcceEEEEEEecCCCCCCCCCCCCCccC
Q psy14552 157 MESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAGPVTL 236 (290)
Q Consensus 157 l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~ 236 (290)
....|.++++.+.. ...++++|..||.+.+|.+.......... +..-+..+..+.+........... ....
T Consensus 98 h~~~V~~v~~sp~~----~~~~l~sgs~dg~I~vwdl~~~~~~~~~~---~~~~~~~v~~l~~~p~~~~~~~~~--~~~~ 168 (753)
T 3jro_A 98 HSASVNSVQWAPHE----YGPLLLVASSDGKVSVVEFKENGTTSPII---IDAHAIGVNSASWAPATIEEDGEH--NGTK 168 (753)
T ss_dssp CSSCEEEEEECCGG----GCSEEEEEETTSEEEEEECCSSSCCCCEE---EECCSSCEEEEEECCCC-----------CG
T ss_pred CCCCeEEEEECCCC----CCCEEEEEeCCCcEEEEEeecCCCcceeE---eecCCCceEEEEecCccccccccc--ccCC
Confidence 46789999986531 14689999999999999986542222221 111122222233211100000000 0001
Q ss_pred CceEEEEEecCceEEEEEEeCC
Q psy14552 237 GNLYLYVGLQNGALLRMVVDQT 258 (290)
Q Consensus 237 ~~~~L~iGl~dG~l~~~~~d~~ 258 (290)
...+|..|-.||.+.-|.+...
T Consensus 169 d~~~l~sgs~dg~I~iwd~~~~ 190 (753)
T 3jro_A 169 ESRKFVTGGADNLVKIWKYNSD 190 (753)
T ss_dssp GGCCEEEEETTSCEEEEEEETT
T ss_pred CCCEEEEEECCCeEEEEeccCC
Confidence 2456999999999998987543
No 30
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=96.78 E-value=0.15 Score=45.41 Aligned_cols=108 Identities=14% Similarity=0.159 Sum_probs=68.1
Q ss_pred CceEEEEeec--CceEEEEeeCCeEEEEEecCCCce-ec-CCCceEEEE--EeCCCEEEEEEeCCeEEEEEEcCCCCCce
Q psy14552 76 KKKIVRCAVN--QRQIVIALQGGRLIYFEMHPVSDK-KE-SDKKKIVRC--AVNQRQIVIALQGGRLIYFEMHPETGILD 149 (290)
Q Consensus 76 ~~~Iv~as~n--~~qv~ial~~g~i~~~~~~~~~~~-~~-~~~~~Ii~a--s~~~~~l~Val~~~~i~~l~l~~~~~~l~ 149 (290)
...|...+.+ .++++.+..+|.|..+.+...... .. .....+.+. +.++ .++.+..++.|+++.+.. +..
T Consensus 247 ~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~--~~~- 322 (425)
T 1r5m_A 247 HGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQ--NTL- 322 (425)
T ss_dssp SSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTT--TEE-
T ss_pred CCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCC--CcE-
Confidence 3445555554 567887777898887766432211 11 122234333 3444 777777899999998865 221
Q ss_pred eeeeeee-cCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCC
Q psy14552 150 ECSETIQ-MESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAP 195 (290)
Q Consensus 150 ~~~~~~~-l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~ 195 (290)
..... -...+.++++.+. ..++++|..||.+.+|.+..
T Consensus 323 --~~~~~~~~~~i~~~~~s~~------~~~l~~~~~dg~i~i~~~~~ 361 (425)
T 1r5m_A 323 --LALSIVDGVPIFAGRISQD------GQKYAVAFMDGQVNVYDLKK 361 (425)
T ss_dssp --EEEEECTTCCEEEEEECTT------SSEEEEEETTSCEEEEECHH
T ss_pred --eEecccCCccEEEEEEcCC------CCEEEEEECCCeEEEEECCC
Confidence 12222 3567888888642 46899999999999999863
No 31
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=96.75 E-value=0.064 Score=48.49 Aligned_cols=143 Identities=10% Similarity=0.093 Sum_probs=87.1
Q ss_pred EeecCceEEEEeeCCeEEEEEecCCCceecCCCceEEEE---EeCCCEEEEEEeCCeEEEEEEcCCCCCceeeeeee-ec
Q psy14552 82 CAVNQRQIVIALQGGRLIYFEMHPVSDKKESDKKKIVRC---AVNQRQIVIALQGGRLIYFEMHPETGILDECSETI-QM 157 (290)
Q Consensus 82 as~n~~qv~ial~~g~i~~~~~~~~~~~~~~~~~~Ii~a---s~~~~~l~Val~~~~i~~l~l~~~~~~l~~~~~~~-~l 157 (290)
-+-...+++.+..+|.+..+.+.............++.+ +.++..++.|..|+.|+++.+.. +.. .... .-
T Consensus 64 ~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~---~~~~~~h 138 (420)
T 3vl1_A 64 FEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRADYTAVDTAKLQMRRFILGTTEGDIKVLDSNF--NLQ---REIDQAH 138 (420)
T ss_dssp EEEEETTEEEEEETTEEEEEECCSEETTTTSCSCCEEEEEEECSSSCEEEEEETTSCEEEECTTS--CEE---EEETTSS
T ss_pred eeecCCeEEEEEcCCcEEEEEecccceeeEEecCCceEEEEEecCCCEEEEEECCCCEEEEeCCC--cce---eeecccc
Confidence 344567777788888888777643211111111234333 44567788888899999987664 221 1121 34
Q ss_pred CcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEecCCcceEEEEEEecCCCCCCCCCCCCCccCC
Q psy14552 158 ESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAGPVTLG 237 (290)
Q Consensus 158 ~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~~ 237 (290)
...|.++++.+. ..+|+.|..||.+.+|.+.....+.... .-.....++.... .
T Consensus 139 ~~~v~~~~~~~~------~~~l~s~s~d~~i~iwd~~~~~~~~~~~--~h~~~v~~~~~~~------------------~ 192 (420)
T 3vl1_A 139 VSEITKLKFFPS------GEALISSSQDMQLKIWSVKDGSNPRTLI--GHRATVTDIAIID------------------R 192 (420)
T ss_dssp SSCEEEEEECTT------SSEEEEEETTSEEEEEETTTCCCCEEEE--CCSSCEEEEEEET------------------T
T ss_pred cCccEEEEECCC------CCEEEEEeCCCeEEEEeCCCCcCceEEc--CCCCcEEEEEEcC------------------C
Confidence 678999998643 4689999999999999987543333221 1112233443331 2
Q ss_pred ceEEEEEecCceEEEEEE
Q psy14552 238 NLYLYVGLQNGALLRMVV 255 (290)
Q Consensus 238 ~~~L~iGl~dG~l~~~~~ 255 (290)
..+|+.|-.||.+.-+.+
T Consensus 193 ~~~l~s~~~d~~v~iwd~ 210 (420)
T 3vl1_A 193 GRNVLSASLDGTIRLWEC 210 (420)
T ss_dssp TTEEEEEETTSCEEEEET
T ss_pred CCEEEEEcCCCcEEEeEC
Confidence 235889999999887754
No 32
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=96.75 E-value=0.3 Score=43.95 Aligned_cols=161 Identities=14% Similarity=0.170 Sum_probs=89.8
Q ss_pred CceEEEEeec--CceEEEEeeCCeEEEEEecCCCceec--CCCceEEEE--EeCCCEEEEEEeCCeEEEEEEcCCCCCce
Q psy14552 76 KKKIVRCAVN--QRQIVIALQGGRLIYFEMHPVSDKKE--SDKKKIVRC--AVNQRQIVIALQGGRLIYFEMHPETGILD 149 (290)
Q Consensus 76 ~~~Iv~as~n--~~qv~ial~~g~i~~~~~~~~~~~~~--~~~~~Ii~a--s~~~~~l~Val~~~~i~~l~l~~~~~~l~ 149 (290)
...|.+.+.+ ..+++.+..+|.|..+.+........ .....+.+. +.++..++.+..|+.|+++.+.. +...
T Consensus 139 ~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~--~~~~ 216 (420)
T 3vl1_A 139 VSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGT--GTTI 216 (420)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTT--TEEE
T ss_pred cCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCC--Ccee
Confidence 3456666654 56777777889998887754322111 112223222 45677788888899999998764 2211
Q ss_pred eeee-eeecCcceeEEEeeeCCCC---------------CccccEEEEEeCCCeEEEEEeCCCCceeEeeEEecCCcceE
Q psy14552 150 ECSE-TIQMESEVLCMALSNAPSG---------------EQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAES 213 (290)
Q Consensus 150 ~~~~-~~~l~~ei~~l~i~~~~~~---------------~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~~~p~S 213 (290)
.... .......+.++.+.+.... .....++++|..||.+.+|.+.....+.... ........+
T Consensus 217 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~~v~~ 295 (420)
T 3vl1_A 217 HTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLP-SKFTCSCNS 295 (420)
T ss_dssp EEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEEC-CTTSSCEEE
T ss_pred EEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcc-cccCCCcee
Confidence 1111 0013345555555332100 0135689999999999999986432222210 001112233
Q ss_pred EEEEEecCCCCCCCCCCCCCccCCceEEEEEecCceEEEEEEe
Q psy14552 214 LVMIEMGASDPTSSDEPAGPVTLGNLYLYVGLQNGALLRMVVD 256 (290)
Q Consensus 214 l~~~~~~~~~~~~~~~~~~~~~~~~~~L~iGl~dG~l~~~~~d 256 (290)
+.... .+..+|+.|-.||.+.-|.+.
T Consensus 296 ~~~~~-----------------~~~~~l~~g~~dg~i~vwd~~ 321 (420)
T 3vl1_A 296 LTVDG-----------------NNANYIYAGYENGMLAQWDLR 321 (420)
T ss_dssp EEECS-----------------SCTTEEEEEETTSEEEEEETT
T ss_pred EEEeC-----------------CCCCEEEEEeCCCeEEEEEcC
Confidence 33221 234379999999999888653
No 33
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=96.71 E-value=0.12 Score=45.09 Aligned_cols=115 Identities=14% Similarity=0.137 Sum_probs=72.6
Q ss_pred CCceEEEEeec-CceEEEEeeCCeEEEEEecC---------CCce-ecCCCceEEEEEeCCCEEEEEEeCCeEEEEEEcC
Q psy14552 75 DKKKIVRCAVN-QRQIVIALQGGRLIYFEMHP---------VSDK-KESDKKKIVRCAVNQRQIVIALQGGRLIYFEMHP 143 (290)
Q Consensus 75 ~~~~Iv~as~n-~~qv~ial~~g~i~~~~~~~---------~~~~-~~~~~~~Ii~as~~~~~l~Val~~~~i~~l~l~~ 143 (290)
-...|.+.+.+ +.+++.+..+|.|..+.+.. .... .......+.+.+.+...++++..++.|+++.+..
T Consensus 100 ~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~ 179 (342)
T 1yfq_A 100 ANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPL 179 (342)
T ss_dssp CCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSC
T ss_pred CCCceEEEEeCCCCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEecCCcEEEEeCCCeEEEEECCc
Confidence 34456666655 67888888889888776543 1100 1112223444455555588888899999998865
Q ss_pred CCCCceeeeeeeecCcceeEEEeee-CCCCCccccEEEEEeCCCeEEEEEeCCC
Q psy14552 144 ETGILDECSETIQMESEVLCMALSN-APSGEQMSRFLAVGLADNTVRLISLAPQ 196 (290)
Q Consensus 144 ~~~~l~~~~~~~~l~~ei~~l~i~~-~~~~~~~~~~l~VGl~dg~v~i~~l~~~ 196 (290)
. +...........+..+.++++.+ . ..++++|..||.+.+|.++..
T Consensus 180 ~-~~~~~~~~~~~~~~~i~~i~~~~~~------~~~l~~~~~dg~i~i~~~~~~ 226 (342)
T 1yfq_A 180 C-EDDNGTIEESGLKYQIRDVALLPKE------QEGYACSSIDGRVAVEFFDDQ 226 (342)
T ss_dssp C-TTCCCEEEECSCSSCEEEEEECSGG------GCEEEEEETTSEEEEEECCTT
T ss_pred c-ccccceeeecCCCCceeEEEECCCC------CCEEEEEecCCcEEEEEEcCC
Confidence 1 11111111223567888888864 2 468999999999999998754
No 34
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=96.70 E-value=0.27 Score=42.81 Aligned_cols=148 Identities=9% Similarity=0.087 Sum_probs=89.5
Q ss_pred cCceEEEEeeCCeEEEEEecCCC----ceecCCC---ceEEEEE------eCCCEEEEEEeCCeEEEEEEcCCCCCceee
Q psy14552 85 NQRQIVIALQGGRLIYFEMHPVS----DKKESDK---KKIVRCA------VNQRQIVIALQGGRLIYFEMHPETGILDEC 151 (290)
Q Consensus 85 n~~qv~ial~~g~i~~~~~~~~~----~~~~~~~---~~Ii~as------~~~~~l~Val~~~~i~~l~l~~~~~~l~~~ 151 (290)
+.++++.+..+|.|..+.+.... .+....+ ..+.+.+ .++..++.+..++.|+++.+.. +..
T Consensus 128 ~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~--~~~--- 202 (357)
T 3i2n_A 128 GAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRN--MAL--- 202 (357)
T ss_dssp CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTT--TEE---
T ss_pred CccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECcc--Cce---
Confidence 45688888888888887765322 1211111 1232222 4566688888889999998875 222
Q ss_pred eeeeecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEE---ecCCcceEEEEEEecCCCCCCCC
Q psy14552 152 SETIQMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQ---GLPDLAESLVMIEMGASDPTSSD 228 (290)
Q Consensus 152 ~~~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~---~L~~~p~Sl~~~~~~~~~~~~~~ 228 (290)
......+..+.++++.+... ...++++|..||.+.+|.+.....+...... .-.....++....
T Consensus 203 ~~~~~~~~~v~~~~~~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---------- 269 (357)
T 3i2n_A 203 RWETNIKNGVCSLEFDRKDI---SMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLP---------- 269 (357)
T ss_dssp EEEEECSSCEEEEEESCSSS---SCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEET----------
T ss_pred eeecCCCCceEEEEcCCCCC---CCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECC----------
Confidence 22345678899999875310 1468999999999999998632222111111 1112223333331
Q ss_pred CCCCCccCCceEEEEEecCceEEEEEEeC
Q psy14552 229 EPAGPVTLGNLYLYVGLQNGALLRMVVDQ 257 (290)
Q Consensus 229 ~~~~~~~~~~~~L~iGl~dG~l~~~~~d~ 257 (290)
.+..+|+.|-.||.+.-|.+..
T Consensus 270 -------~~~~~l~~~~~dg~i~iwd~~~ 291 (357)
T 3i2n_A 270 -------QNRELFLTAGGAGGLHLWKYEY 291 (357)
T ss_dssp -------TEEEEEEEEETTSEEEEEEEEC
T ss_pred -------CCCcEEEEEeCCCcEEEeecCC
Confidence 2344799999999999998864
No 35
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=96.66 E-value=0.29 Score=42.61 Aligned_cols=113 Identities=11% Similarity=0.123 Sum_probs=69.7
Q ss_pred ceEEEEe------ecCceEEEEeeCCeEEEEEecCCCc-eecCCCceEEEE--Ee---CCCEEEEEEeCCeEEEEEEcCC
Q psy14552 77 KKIVRCA------VNQRQIVIALQGGRLIYFEMHPVSD-KKESDKKKIVRC--AV---NQRQIVIALQGGRLIYFEMHPE 144 (290)
Q Consensus 77 ~~Iv~as------~n~~qv~ial~~g~i~~~~~~~~~~-~~~~~~~~Ii~a--s~---~~~~l~Val~~~~i~~l~l~~~ 144 (290)
..+.+.. .+..+++.+..+|.|..+.+..... +.......+.+. +. ++..++++..++.|+++.+...
T Consensus 165 ~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 244 (357)
T 3i2n_A 165 RDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQ 244 (357)
T ss_dssp CCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEE
T ss_pred CceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCC
Confidence 3555555 4577788888889998887653221 111122234333 33 5667888888999999987641
Q ss_pred CCCceeee--eeeecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCC
Q psy14552 145 TGILDECS--ETIQMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAP 195 (290)
Q Consensus 145 ~~~l~~~~--~~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~ 195 (290)
..+.... ....-...|.++++.+. +..+++.|..||.+.+|.+..
T Consensus 245 -~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~l~~~~~dg~i~iwd~~~ 291 (357)
T 3i2n_A 245 -HPTKGFASVSEKAHKSTVWQVRHLPQ-----NRELFLTAGGAGGLHLWKYEY 291 (357)
T ss_dssp -ETTTEEEEEEEECCSSCEEEEEEETT-----EEEEEEEEETTSEEEEEEEEC
T ss_pred -CcccceeeeccCCCcCCEEEEEECCC-----CCcEEEEEeCCCcEEEeecCC
Confidence 1111110 00134667888888743 234899999999999999864
No 36
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=96.63 E-value=0.35 Score=43.15 Aligned_cols=68 Identities=16% Similarity=0.169 Sum_probs=48.2
Q ss_pred EeCCCEEEEEEeCCeEEEEEEcCCCCCceeeeeeee-cCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCC
Q psy14552 121 AVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQ-MESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQD 197 (290)
Q Consensus 121 s~~~~~l~Val~~~~i~~l~l~~~~~~l~~~~~~~~-l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~ 197 (290)
+.++..++.|..|+++++..+.. +..... .... -...|.++++.+. ..+|+.|..||.+.+|.++...
T Consensus 70 sp~g~~l~s~s~D~~v~iw~~~~--~~~~~~-~~~~~h~~~v~~v~~sp~------~~~l~s~s~D~~v~iwd~~~~~ 138 (345)
T 3fm0_A 70 SPCGNYLASASFDATTCIWKKNQ--DDFECV-TTLEGHENEVKSVAWAPS------GNLLATCSRDKSVWVWEVDEED 138 (345)
T ss_dssp CTTSSEEEEEETTSCEEEEEECC--C-EEEE-EEECCCSSCEEEEEECTT------SSEEEEEETTSCEEEEEECTTS
T ss_pred CCCCCEEEEEECCCcEEEEEccC--CCeEEE-EEccCCCCCceEEEEeCC------CCEEEEEECCCeEEEEECCCCC
Confidence 45667788888899999998865 222221 1222 3467889988653 4689999999999999997543
No 37
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=96.63 E-value=0.29 Score=42.31 Aligned_cols=120 Identities=10% Similarity=0.093 Sum_probs=69.2
Q ss_pred EEEEeCCCEEEEEEe-CCeEEEEEEcCCCCCceeeeeeeecCcceeEEEeeeCCCCCccccEEEEEe-CCCeEEEEEeCC
Q psy14552 118 VRCAVNQRQIVIALQ-GGRLIYFEMHPETGILDECSETIQMESEVLCMALSNAPSGEQMSRFLAVGL-ADNTVRLISLAP 195 (290)
Q Consensus 118 i~as~~~~~l~Val~-~~~i~~l~l~~~~~~l~~~~~~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl-~dg~v~i~~l~~ 195 (290)
++.+.++..++++.. ++.|.++.+++ +..............+.++.+.+. ..+++++. .++.+.+|.++.
T Consensus 89 ~~~s~dg~~l~~~~~~~~~i~~~d~~~--~~~~~~~~~~~~~~~~~~~~~s~d------g~~l~~~~~~~~~v~~~d~~~ 160 (343)
T 1ri6_A 89 ISTDHQGQFVFVGSYNAGNVSVTRLED--GLPVGVVDVVEGLDGCHSANISPD------NRTLWVPALKQDRICLFTVSD 160 (343)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEEET--TEEEEEEEEECCCTTBCCCEECTT------SSEEEEEEGGGTEEEEEEECT
T ss_pred EEEcCCCCEEEEEecCCCeEEEEECCC--CccccccccccCCCCceEEEECCC------CCEEEEecCCCCEEEEEEecC
Confidence 333556667777765 77899888852 211122223334455666777542 35677777 799999999975
Q ss_pred CCceeEee--EEe--cCCcceEEEEEEecCCCCCCCCCCCCCccCCceEEEEEecCceEEEEEEeCCCCcc
Q psy14552 196 QDCLKQKN--LQG--LPDLAESLVMIEMGASDPTSSDEPAGPVTLGNLYLYVGLQNGALLRMVVDQTSGDL 262 (290)
Q Consensus 196 ~~~l~~~~--~~~--L~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~~~~~L~iGl~dG~l~~~~~d~~~~~l 262 (290)
...+.... ... .+..|+.+.+.. .+...+..+..+|.+.-|.++..++.+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~p-----------------dg~~l~~~~~~~~~i~~~~~~~~~g~~ 214 (343)
T 1ri6_A 161 DGHLVAQDPAEVTTVEGAGPRHMVFHP-----------------NEQYAYCVNELNSSVDVWELKDPHGNI 214 (343)
T ss_dssp TSCEEEEEEEEEECSTTCCEEEEEECT-----------------TSSEEEEEETTTTEEEEEESSCTTSCC
T ss_pred CCceeeecccccccCCCCCcceEEECC-----------------CCCEEEEEeCCCCEEEEEEecCCCCcE
Confidence 34444332 222 234566654431 233323444588888888876655544
No 38
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=96.62 E-value=0.22 Score=46.04 Aligned_cols=115 Identities=8% Similarity=0.095 Sum_probs=69.2
Q ss_pred EeCCCEE-EEEEeCCeEEEEEEcCCCCCceeeeeeeecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCce
Q psy14552 121 AVNQRQI-VIALQGGRLIYFEMHPETGILDECSETIQMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCL 199 (290)
Q Consensus 121 s~~~~~l-~Val~~~~i~~l~l~~~~~~l~~~~~~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l 199 (290)
+.++..+ +.+..|+.|+++.+...++.....+.....+..|.++++.+. ..+|++|..+|.+..|.+......
T Consensus 111 s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~------~~~l~~~~~~g~v~~~~~~~~~~~ 184 (450)
T 2vdu_B 111 TSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAED------DTTVIIADKFGDVYSIDINSIPEE 184 (450)
T ss_dssp CTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTT------SSEEEEEETTSEEEEEETTSCCCS
T ss_pred cCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCC------CCEEEEEeCCCcEEEEecCCcccc
Confidence 3455665 556568999999998311332222222356788999998743 478999999999999988543221
Q ss_pred e-EeeE-EecCCcceEEEEEEecCCCCCCCCCCCCCccCCceEEEEEecCceEEEEEEe
Q psy14552 200 K-QKNL-QGLPDLAESLVMIEMGASDPTSSDEPAGPVTLGNLYLYVGLQNGALLRMVVD 256 (290)
Q Consensus 200 ~-~~~~-~~L~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~~~~~L~iGl~dG~l~~~~~d 256 (290)
. .... ..-.....++.... + ..+..+|+.|-.||.+.-|.+.
T Consensus 185 ~~~~~~~~~h~~~v~~~~~sp---~------------~~~~~~l~s~~~d~~i~vwd~~ 228 (450)
T 2vdu_B 185 KFTQEPILGHVSMLTDVHLIK---D------------SDGHQFIITSDRDEHIKISHYP 228 (450)
T ss_dssp SCCCCCSEECSSCEEEEEEEE---C------------TTSCEEEEEEETTSCEEEEEES
T ss_pred cccceeeecccCceEEEEEcC---C------------CCCCcEEEEEcCCCcEEEEECC
Confidence 1 1000 01112334444442 0 0124578899999998888764
No 39
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=96.59 E-value=0.3 Score=44.45 Aligned_cols=153 Identities=12% Similarity=0.155 Sum_probs=89.3
Q ss_pred EEEEeec--CceEEEEeeCCeEEEEEecCCCceec-C-CCceEEEE--EeCCCEEEEEEeCCeEEEEEEcCCCCCceeee
Q psy14552 79 IVRCAVN--QRQIVIALQGGRLIYFEMHPVSDKKE-S-DKKKIVRC--AVNQRQIVIALQGGRLIYFEMHPETGILDECS 152 (290)
Q Consensus 79 Iv~as~n--~~qv~ial~~g~i~~~~~~~~~~~~~-~-~~~~Ii~a--s~~~~~l~Val~~~~i~~l~l~~~~~~l~~~~ 152 (290)
|.+++.+ +.+++.+..+|.|..+.+........ . ....+.+. +.++..++.+..|++|++..+.. +. ..
T Consensus 126 v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~--~~---~~ 200 (393)
T 1erj_A 126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRT--GQ---CS 200 (393)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT--TE---EE
T ss_pred EEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCC--Ce---eE
Confidence 5555554 56777777888888776543211111 1 12224333 34566788888899999998765 32 12
Q ss_pred eeeecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEec--CCcceEEEEEEecCCCCCCCCCC
Q psy14552 153 ETIQMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGL--PDLAESLVMIEMGASDPTSSDEP 230 (290)
Q Consensus 153 ~~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L--~~~p~Sl~~~~~~~~~~~~~~~~ 230 (290)
........+.++++.+.+ ..++++|..||.+.+|.+.....+........ ..-...+.-+.+.
T Consensus 201 ~~~~~~~~v~~~~~~~~~-----~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~---------- 265 (393)
T 1erj_A 201 LTLSIEDGVTTVAVSPGD-----GKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFT---------- 265 (393)
T ss_dssp EEEECSSCEEEEEECSTT-----CCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEEC----------
T ss_pred EEEEcCCCcEEEEEECCC-----CCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEEC----------
Confidence 234566778888886532 46899999999999999764332322211100 1111223333331
Q ss_pred CCCccCCceEEEEEecCceEEEEEEe
Q psy14552 231 AGPVTLGNLYLYVGLQNGALLRMVVD 256 (290)
Q Consensus 231 ~~~~~~~~~~L~iGl~dG~l~~~~~d 256 (290)
....+|+.|-.||.+.-+.+.
T Consensus 266 -----~~g~~l~s~s~d~~v~~wd~~ 286 (393)
T 1erj_A 266 -----RDGQSVVSGSLDRSVKLWNLQ 286 (393)
T ss_dssp -----TTSSEEEEEETTSEEEEEEC-
T ss_pred -----CCCCEEEEEeCCCEEEEEECC
Confidence 123458899999998888764
No 40
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=96.55 E-value=0.39 Score=42.84 Aligned_cols=153 Identities=14% Similarity=0.065 Sum_probs=91.2
Q ss_pred CCceEEEEeecC---ceEEEEeeCCeEEEEEecCCCceec---CCC--ceE--EEEEeCCCEEEEEEeCCeEEEEEEcCC
Q psy14552 75 DKKKIVRCAVNQ---RQIVIALQGGRLIYFEMHPVSDKKE---SDK--KKI--VRCAVNQRQIVIALQGGRLIYFEMHPE 144 (290)
Q Consensus 75 ~~~~Iv~as~n~---~qv~ial~~g~i~~~~~~~~~~~~~---~~~--~~I--i~as~~~~~l~Val~~~~i~~l~l~~~ 144 (290)
....|.+++.+. .+++.+..+|.|....+.. ..+.. ..+ ..+ ++.+.++..++.+..|+.|+++.+..
T Consensus 117 h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~- 194 (383)
T 3ei3_B 117 PGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDG- 194 (383)
T ss_dssp TTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTS-
T ss_pred cCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCC-
Confidence 345666776653 6777777788888877653 22211 111 113 22256677888888899999998743
Q ss_pred CCCceeeeeee-ecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCc-eeEeeEEecCCcceEEEEEEecCC
Q psy14552 145 TGILDECSETI-QMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDC-LKQKNLQGLPDLAESLVMIEMGAS 222 (290)
Q Consensus 145 ~~~l~~~~~~~-~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~-l~~~~~~~L~~~p~Sl~~~~~~~~ 222 (290)
. .. ... .-...|.++++.+. +..+++.|..||.+.+|.+..... -..+....-.....++... .
T Consensus 195 --~--~~-~~~~~h~~~v~~~~~~~~-----~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s---~- 260 (383)
T 3ei3_B 195 --H--EI-FKEKLHKAKVTHAEFNPR-----CDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFN---P- 260 (383)
T ss_dssp --C--EE-EEEECSSSCEEEEEECSS-----CTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEEC---T-
T ss_pred --C--EE-EEeccCCCcEEEEEECCC-----CCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEc---C-
Confidence 1 11 122 24567888988753 134899999999999999864210 1111111222223333322 1
Q ss_pred CCCCCCCCCCCccCCceEEEEEecCceEEEEEEe
Q psy14552 223 DPTSSDEPAGPVTLGNLYLYVGLQNGALLRMVVD 256 (290)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~L~iGl~dG~l~~~~~d 256 (290)
....+|+.|-.||.+.-|.+.
T Consensus 261 -------------~~~~~l~~~~~d~~i~iwd~~ 281 (383)
T 3ei3_B 261 -------------TDSTKLLTTDQRNEIRVYSSY 281 (383)
T ss_dssp -------------TTSCEEEEEESSSEEEEEETT
T ss_pred -------------CCCCEEEEEcCCCcEEEEECC
Confidence 023468899999999888653
No 41
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=96.50 E-value=0.24 Score=44.62 Aligned_cols=158 Identities=9% Similarity=0.096 Sum_probs=86.8
Q ss_pred ceEEEEeec--CceEEEEeeCCeEEEEEecCCCceec-CCCc-eE--EEEEeCCC-EEEEEEeCCeEEEEEEcCCCCCce
Q psy14552 77 KKIVRCAVN--QRQIVIALQGGRLIYFEMHPVSDKKE-SDKK-KI--VRCAVNQR-QIVIALQGGRLIYFEMHPETGILD 149 (290)
Q Consensus 77 ~~Iv~as~n--~~qv~ial~~g~i~~~~~~~~~~~~~-~~~~-~I--i~as~~~~-~l~Val~~~~i~~l~l~~~~~~l~ 149 (290)
..|.+++.+ ..+++.+-.+|.|..+.+........ ..+. .+ ++.+.++. .++.+..|+.|+++.+.. +...
T Consensus 140 ~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~--~~~~ 217 (357)
T 4g56_B 140 DIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRK--PKPA 217 (357)
T ss_dssp SCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTS--SSCB
T ss_pred CCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCC--Ccee
Confidence 356666554 56777777888888776653221111 1111 23 22233333 466666789999887654 2211
Q ss_pred eeeeeeecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEecCCcceEEEEEEecCCCCCCCCC
Q psy14552 150 ECSETIQMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDE 229 (290)
Q Consensus 150 ~~~~~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~~~~~~~~~~~~~~ 229 (290)
.......-...+.++++.+. ...++++|..|+.|.+|.+.....+... ....- .+.-+.+..
T Consensus 218 ~~~~~~~~~~~v~~v~~sp~-----~~~~la~g~~d~~i~~wd~~~~~~~~~~---~~~~~--~v~~l~~sp-------- 279 (357)
T 4g56_B 218 TRIDFCASDTIPTSVTWHPE-----KDDTFACGDETGNVSLVNIKNPDSAQTS---AVHSQ--NITGLAYSY-------- 279 (357)
T ss_dssp CBCCCTTCCSCEEEEEECTT-----STTEEEEEESSSCEEEEESSCGGGCEEE---CCCSS--CEEEEEECS--------
T ss_pred eeeeeccccccccchhhhhc-----ccceEEEeecccceeEEECCCCcEeEEE---eccce--eEEEEEEcC--------
Confidence 11111123456778888643 2568999999999999998643222221 11111 222223311
Q ss_pred CCCCccCCceEEEEEecCceEEEEEEeCCCCcc
Q psy14552 230 PAGPVTLGNLYLYVGLQNGALLRMVVDQTSGDL 262 (290)
Q Consensus 230 ~~~~~~~~~~~L~iGl~dG~l~~~~~d~~~~~l 262 (290)
.+..+|..|-.||.+.-+ |..++++
T Consensus 280 ------~~~~~lasgs~D~~i~iw--d~~~~~~ 304 (357)
T 4g56_B 280 ------HSSPFLASISEDCTVAVL--DADFSEV 304 (357)
T ss_dssp ------SSSCCEEEEETTSCEEEE--CTTSCEE
T ss_pred ------CCCCEEEEEeCCCEEEEE--ECCCCcE
Confidence 233457788899988766 4455544
No 42
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.49 E-value=0.76 Score=45.35 Aligned_cols=152 Identities=12% Similarity=0.072 Sum_probs=88.8
Q ss_pred EEEEee--cCceEEEEeeCCeEEEEEecCCCceec-C-CCceEEEE--EeCCCEEEEEEeCCeEEEEEEcCCCCCceeee
Q psy14552 79 IVRCAV--NQRQIVIALQGGRLIYFEMHPVSDKKE-S-DKKKIVRC--AVNQRQIVIALQGGRLIYFEMHPETGILDECS 152 (290)
Q Consensus 79 Iv~as~--n~~qv~ial~~g~i~~~~~~~~~~~~~-~-~~~~Ii~a--s~~~~~l~Val~~~~i~~l~l~~~~~~l~~~~ 152 (290)
|.+.+. ++++++.+..+|.|..+.+........ . ....+.+. +.++..++.+..|+.|+++.++.. ......
T Consensus 58 v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~-~~~~~~- 135 (814)
T 3mkq_A 58 VRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN-WALEQT- 135 (814)
T ss_dssp EEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGT-SEEEEE-
T ss_pred EEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCC-ceEEEE-
Confidence 444443 466788888889888877653322111 1 11223222 456667888888999999988752 122111
Q ss_pred eeeecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEecCCcceEEEEEEecCCCCCCCCCCCC
Q psy14552 153 ETIQMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAG 232 (290)
Q Consensus 153 ~~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~~~~~~~~~~~~~~~~~ 232 (290)
...-+..+.++++.+. ...++++|..||.|.+|.+.......... ..-......+....
T Consensus 136 -~~~~~~~v~~~~~~p~-----~~~~l~~~~~dg~v~vwd~~~~~~~~~~~-~~~~~~v~~~~~~~-------------- 194 (814)
T 3mkq_A 136 -FEGHEHFVMCVAFNPK-----DPSTFASGCLDRTVKVWSLGQSTPNFTLT-TGQERGVNYVDYYP-------------- 194 (814)
T ss_dssp -EECCSSCEEEEEEETT-----EEEEEEEEETTSEEEEEETTCSSCSEEEE-CCCTTCCCEEEECC--------------
T ss_pred -EcCCCCcEEEEEEEcC-----CCCEEEEEeCCCeEEEEECCCCcceeEEe-cCCCCCEEEEEEEE--------------
Confidence 1124567889988752 25689999999999999986432222211 00001122222221
Q ss_pred CccCCceEEEEEecCceEEEEEE
Q psy14552 233 PVTLGNLYLYVGLQNGALLRMVV 255 (290)
Q Consensus 233 ~~~~~~~~L~iGl~dG~l~~~~~ 255 (290)
.....+|++|..||.+.-|.+
T Consensus 195 --~~~~~~l~~~~~dg~i~~~d~ 215 (814)
T 3mkq_A 195 --LPDKPYMITASDDLTIKIWDY 215 (814)
T ss_dssp --STTCCEEEEECTTSEEEEEET
T ss_pred --CCCCCEEEEEeCCCEEEEEEC
Confidence 013446999999998887754
No 43
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=96.49 E-value=0.37 Score=41.80 Aligned_cols=154 Identities=14% Similarity=0.156 Sum_probs=88.5
Q ss_pred eEEEEeec--Cc-eEEEEeeCCeEEEEEe-cCCCceecC---CCceEEEE--EeCCCEEEEEEeCCeEEEEEEcCCCCCc
Q psy14552 78 KIVRCAVN--QR-QIVIALQGGRLIYFEM-HPVSDKKES---DKKKIVRC--AVNQRQIVIALQGGRLIYFEMHPETGIL 148 (290)
Q Consensus 78 ~Iv~as~n--~~-qv~ial~~g~i~~~~~-~~~~~~~~~---~~~~Ii~a--s~~~~~l~Val~~~~i~~l~l~~~~~~l 148 (290)
.|.+++.+ +. +++.+..+|.|..+.+ ......... ....|.+. +. +..++.+..|+.|+++.+....+.-
T Consensus 58 ~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~ 136 (342)
T 1yfq_A 58 PLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGV 136 (342)
T ss_dssp CEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBC
T ss_pred ceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEccccccccc
Confidence 45555443 55 7888888899988876 433211111 22234333 34 6678888889999998765300000
Q ss_pred ----eeeeeeeecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCC-CCceeEeeEEecCCcceEEEEEEecCCC
Q psy14552 149 ----DECSETIQMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAP-QDCLKQKNLQGLPDLAESLVMIEMGASD 223 (290)
Q Consensus 149 ----~~~~~~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~-~~~l~~~~~~~L~~~p~Sl~~~~~~~~~ 223 (290)
.+.......+..+.++++.+ ..+++|..||.+.+|.+.. ...............+.++...
T Consensus 137 ~~~~~~~~~~~~~~~~v~~~~~~~--------~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~------ 202 (342)
T 1yfq_A 137 IAVKNLNSNNTKVKNKIFTMDTNS--------SRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALL------ 202 (342)
T ss_dssp EEEEESCSSSSSSCCCEEEEEECS--------SEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEEC------
T ss_pred ccccCCeeeEEeeCCceEEEEecC--------CcEEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEEC------
Confidence 01112233677888888852 2299999999999999864 2211111111122223333222
Q ss_pred CCCCCCCCCCccC-CceEEEEEecCceEEEEEEeCC
Q psy14552 224 PTSSDEPAGPVTL-GNLYLYVGLQNGALLRMVVDQT 258 (290)
Q Consensus 224 ~~~~~~~~~~~~~-~~~~L~iGl~dG~l~~~~~d~~ 258 (290)
. ...++++|-.||.+.-+.++..
T Consensus 203 ------------~~~~~~l~~~~~dg~i~i~~~~~~ 226 (342)
T 1yfq_A 203 ------------PKEQEGYACSSIDGRVAVEFFDDQ 226 (342)
T ss_dssp ------------SGGGCEEEEEETTSEEEEEECCTT
T ss_pred ------------CCCCCEEEEEecCCcEEEEEEcCC
Confidence 1 2346999999999988877654
No 44
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=96.44 E-value=0.56 Score=43.30 Aligned_cols=112 Identities=9% Similarity=0.085 Sum_probs=67.9
Q ss_pred eEEEEeec--CceEEEEeeCCeEEEEEecCCCcee----c-C-CCceE--EEEEeC---CCEEEEEEeCCeEEEEEEcCC
Q psy14552 78 KIVRCAVN--QRQIVIALQGGRLIYFEMHPVSDKK----E-S-DKKKI--VRCAVN---QRQIVIALQGGRLIYFEMHPE 144 (290)
Q Consensus 78 ~Iv~as~n--~~qv~ial~~g~i~~~~~~~~~~~~----~-~-~~~~I--i~as~~---~~~l~Val~~~~i~~l~l~~~ 144 (290)
.|.+++.+ +.+++.+..+|.+..+.+....... . . ....+ ++.+.+ +..++.|..|+.|+++.+..
T Consensus 151 ~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~- 229 (450)
T 2vdu_B 151 RPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQ- 229 (450)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESC-
T ss_pred CceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCC-
Confidence 34444443 5677777778888777664322111 0 0 11123 222455 45677787899999999875
Q ss_pred CCCceeeeeeeecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCce
Q psy14552 145 TGILDECSETIQMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCL 199 (290)
Q Consensus 145 ~~~l~~~~~~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l 199 (290)
+...... ...-...|.++++. . ..+|+.|..||.|.+|.+.....+
T Consensus 230 -~~~~~~~-~~~h~~~v~~~~~s-d------~~~l~s~~~d~~v~vwd~~~~~~~ 275 (450)
T 2vdu_B 230 -CFIVDKW-LFGHKHFVSSICCG-K------DYLLLSAGGDDKIFAWDWKTGKNL 275 (450)
T ss_dssp -TTCEEEE-CCCCSSCEEEEEEC-S------TTEEEEEESSSEEEEEETTTCCEE
T ss_pred -Cceeeee-ecCCCCceEEEEEC-C------CCEEEEEeCCCeEEEEECCCCcEe
Confidence 3221110 11234678888886 2 468999999999999998754333
No 45
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=96.43 E-value=0.15 Score=46.10 Aligned_cols=150 Identities=11% Similarity=0.107 Sum_probs=84.0
Q ss_pred EEEEee-cCceEEEEeeCCeEEEEEecCCCc-----eecCCCc-eEEEE--EeCCCEEEEEEeCCeEEEEEEcCCCCCce
Q psy14552 79 IVRCAV-NQRQIVIALQGGRLIYFEMHPVSD-----KKESDKK-KIVRC--AVNQRQIVIALQGGRLIYFEMHPETGILD 149 (290)
Q Consensus 79 Iv~as~-n~~qv~ial~~g~i~~~~~~~~~~-----~~~~~~~-~Ii~a--s~~~~~l~Val~~~~i~~l~l~~~~~~l~ 149 (290)
|..++. .+.+++.+..+|.|....+..... +....+. .|.+. +.++..++.|..|+.|+++.+.. +..
T Consensus 97 V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~--~~~- 173 (357)
T 4g56_B 97 VTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQ--KAV- 173 (357)
T ss_dssp EEEEEEETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTT--TEE-
T ss_pred EEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCC--CcE-
Confidence 554443 367788888888887665543211 1111221 23222 45667788888899999998764 321
Q ss_pred eeeeeee-cCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEecCCcceEEEEEEecCCCCCCCC
Q psy14552 150 ECSETIQ-MESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSD 228 (290)
Q Consensus 150 ~~~~~~~-l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~~~~~~~~~~~~~ 228 (290)
...+. -...|.++++.+. ...+++.|..||.|.+|.+.............-...+.++....
T Consensus 174 --~~~~~~h~~~v~~v~~s~~-----~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp---------- 236 (357)
T 4g56_B 174 --LKSYNAHSSEVNCVAACPG-----KDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHP---------- 236 (357)
T ss_dssp --EEEECCCSSCEEEEEECTT-----CSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECT----------
T ss_pred --EEEEcCCCCCEEEEEEccC-----CCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhh----------
Confidence 12222 3467888888643 24577888899999999875432222211001112233433221
Q ss_pred CCCCCccCCceEEEEEecCceEEEEEE
Q psy14552 229 EPAGPVTLGNLYLYVGLQNGALLRMVV 255 (290)
Q Consensus 229 ~~~~~~~~~~~~L~iGl~dG~l~~~~~ 255 (290)
.+..+|.+|-.||.+.-|.+
T Consensus 237 -------~~~~~la~g~~d~~i~~wd~ 256 (357)
T 4g56_B 237 -------EKDDTFACGDETGNVSLVNI 256 (357)
T ss_dssp -------TSTTEEEEEESSSCEEEEES
T ss_pred -------cccceEEEeecccceeEEEC
Confidence 23345888999999877754
No 46
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=96.41 E-value=0.21 Score=44.87 Aligned_cols=148 Identities=15% Similarity=0.192 Sum_probs=86.1
Q ss_pred EEEEeec--CceEEEEeeCCeEEEEEecCCCceec--CCCceEEEEE--e--CCCEEEEEEeCCeEEEEEEcCCCCCcee
Q psy14552 79 IVRCAVN--QRQIVIALQGGRLIYFEMHPVSDKKE--SDKKKIVRCA--V--NQRQIVIALQGGRLIYFEMHPETGILDE 150 (290)
Q Consensus 79 Iv~as~n--~~qv~ial~~g~i~~~~~~~~~~~~~--~~~~~Ii~as--~--~~~~l~Val~~~~i~~l~l~~~~~~l~~ 150 (290)
|..++.. +.+++.+-.+|.|....+........ .....+.+.+ . ++..++.|..|+.|+++.+.. +..
T Consensus 157 v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~--~~~-- 232 (354)
T 2pbi_B 157 LSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRS--GQC-- 232 (354)
T ss_dssp EEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTT--CCE--
T ss_pred EEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCC--CcE--
Confidence 4444443 55777787888888776653221111 1112232222 2 345688888899999998765 322
Q ss_pred eeeeee-cCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEecCCcceEEEEEEecCCCCCCCCC
Q psy14552 151 CSETIQ-MESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDE 229 (290)
Q Consensus 151 ~~~~~~-l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~~~~~~~~~~~~~~ 229 (290)
..... -...|.++++.+. ..+++.|..||++++|.+.....+... ........+..+.+.
T Consensus 233 -~~~~~~h~~~v~~v~~~p~------~~~l~s~s~D~~v~lwd~~~~~~~~~~---~~~~~~~~~~~~~~s--------- 293 (354)
T 2pbi_B 233 -VQAFETHESDVNSVRYYPS------GDAFASGSDDATCRLYDLRADREVAIY---SKESIIFGASSVDFS--------- 293 (354)
T ss_dssp -EEEECCCSSCEEEEEECTT------SSEEEEEETTSCEEEEETTTTEEEEEE---CCTTCCSCEEEEEEC---------
T ss_pred -EEEecCCCCCeEEEEEeCC------CCEEEEEeCCCeEEEEECCCCcEEEEE---cCCCcccceeEEEEe---------
Confidence 12222 3567888888643 468999999999999998643222211 111111122222331
Q ss_pred CCCCccCCceEEEEEecCceEEEEEE
Q psy14552 230 PAGPVTLGNLYLYVGLQNGALLRMVV 255 (290)
Q Consensus 230 ~~~~~~~~~~~L~iGl~dG~l~~~~~ 255 (290)
....+|+.|-.||.+.-|.+
T Consensus 294 ------~~g~~l~~g~~d~~i~vwd~ 313 (354)
T 2pbi_B 294 ------LSGRLLFAGYNDYTINVWDV 313 (354)
T ss_dssp ------TTSSEEEEEETTSCEEEEET
T ss_pred ------CCCCEEEEEECCCcEEEEEC
Confidence 12346999999999988754
No 47
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=96.34 E-value=0.54 Score=42.14 Aligned_cols=102 Identities=8% Similarity=0.063 Sum_probs=63.0
Q ss_pred ceEEEEeeCCeEEEEEecCCCceec--CCCceEEEE--EeCCCEEEEEEeCCeEEEEEEcCCCCCceeeeeeeecCccee
Q psy14552 87 RQIVIALQGGRLIYFEMHPVSDKKE--SDKKKIVRC--AVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQMESEVL 162 (290)
Q Consensus 87 ~qv~ial~~g~i~~~~~~~~~~~~~--~~~~~Ii~a--s~~~~~l~Val~~~~i~~l~l~~~~~~l~~~~~~~~l~~ei~ 162 (290)
.+++.+-.+|.|....+........ .....+.+. +.++..++.|..|++|+++.+.. +..............+.
T Consensus 211 ~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~--~~~~~~~~~~~~~~~~~ 288 (354)
T 2pbi_B 211 NTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRA--DREVAIYSKESIIFGAS 288 (354)
T ss_dssp CEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT--TEEEEEECCTTCCSCEE
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCC--CcEEEEEcCCCccccee
Confidence 5677777788888777653221111 112224333 44567788888899999998765 21111111111234577
Q ss_pred EEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCC
Q psy14552 163 CMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQ 196 (290)
Q Consensus 163 ~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~ 196 (290)
++++.+. ..+|++|..||.+.+|.+...
T Consensus 289 ~~~~s~~------g~~l~~g~~d~~i~vwd~~~~ 316 (354)
T 2pbi_B 289 SVDFSLS------GRLLFAGYNDYTINVWDVLKG 316 (354)
T ss_dssp EEEECTT------SSEEEEEETTSCEEEEETTTC
T ss_pred EEEEeCC------CCEEEEEECCCcEEEEECCCC
Confidence 7777642 579999999999999998543
No 48
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=96.31 E-value=0.53 Score=41.72 Aligned_cols=148 Identities=14% Similarity=0.201 Sum_probs=87.5
Q ss_pred EEEEee-cCceEEEEeeCCeEEEEEecCCCceec-C-CCceEEEE--EeCCCEEEEEEeCCeEEEEEEcCCCCCceeeee
Q psy14552 79 IVRCAV-NQRQIVIALQGGRLIYFEMHPVSDKKE-S-DKKKIVRC--AVNQRQIVIALQGGRLIYFEMHPETGILDECSE 153 (290)
Q Consensus 79 Iv~as~-n~~qv~ial~~g~i~~~~~~~~~~~~~-~-~~~~Ii~a--s~~~~~l~Val~~~~i~~l~l~~~~~~l~~~~~ 153 (290)
|.++.. .+.+++.+..+|.|....+........ . ....+.+. +.++..++.|..|+.|++..+.. +... .
T Consensus 146 v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~--~~~~---~ 220 (340)
T 1got_B 146 LSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE--GMCR---Q 220 (340)
T ss_dssp EEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT--CSEE---E
T ss_pred EEEEEECCCCcEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCC--CeeE---E
Confidence 444433 467777777788888776543211111 1 11223333 34555677777899999998765 2211 1
Q ss_pred ee-ecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEecCCcceEEEEEEecCCCCCCCCCCCC
Q psy14552 154 TI-QMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAG 232 (290)
Q Consensus 154 ~~-~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~~~~~~~~~~~~~~~~~ 232 (290)
.. .-...|.++++.+. ..+++.|..||.+.+|.+.....+.. .........+.-+.+.
T Consensus 221 ~~~~h~~~v~~v~~~p~------~~~l~s~s~d~~v~iwd~~~~~~~~~---~~~~~~~~~v~~~~~s------------ 279 (340)
T 1got_B 221 TFTGHESDINAICFFPN------GNAFATGSDDATCRLFDLRADQELMT---YSHDNIICGITSVSFS------------ 279 (340)
T ss_dssp EECCCSSCEEEEEECTT------SSEEEEEETTSCEEEEETTTTEEEEE---ECCTTCCSCEEEEEEC------------
T ss_pred EEcCCcCCEEEEEEcCC------CCEEEEEcCCCcEEEEECCCCcEEEE---EccCCcccceEEEEEC------------
Confidence 22 23567888888653 46899999999999999864322221 2222222233333432
Q ss_pred CccCCceEEEEEecCceEEEEEE
Q psy14552 233 PVTLGNLYLYVGLQNGALLRMVV 255 (290)
Q Consensus 233 ~~~~~~~~L~iGl~dG~l~~~~~ 255 (290)
....+|..|..||.+.-|.+
T Consensus 280 ---~~g~~l~~g~~d~~i~vwd~ 299 (340)
T 1got_B 280 ---KSGRLLLAGYDDFNCNVWDA 299 (340)
T ss_dssp ---TTSSEEEEEETTSEEEEEET
T ss_pred ---CCCCEEEEECCCCeEEEEEc
Confidence 12346999999999887754
No 49
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=96.31 E-value=0.16 Score=45.50 Aligned_cols=167 Identities=10% Similarity=0.107 Sum_probs=90.3
Q ss_pred EEEEeecCCccCCCC-eEEEEeeCCCeEEEEe-cCCeEEEeecCcce--eeeccCCCCCceEEEEeec--CceEEEEeeC
Q psy14552 22 TVEEVSGSGFYGTTP-TLCCSAMGDNSIVQVY-PDGIRHIGAKNTTW--KVSDKKESDKKKIVRCAVN--QRQIVIALQG 95 (290)
Q Consensus 22 ~~~e~~~~gf~~~~~-Ti~~~~~~~~~ivQVt-~~~v~l~~~~~~~~--~~~~~~~~~~~~Iv~as~n--~~qv~ial~~ 95 (290)
.+.++....|.++.+ .+++|.......+-.. ...|++.+..+... .+. .......|.+.+.+ ..+++.+..+
T Consensus 11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~d 88 (416)
T 2pm9_A 11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIA--SLQVDSKFNDLDWSHNNKIIAGALDN 88 (416)
T ss_dssp EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSC--CCCCSSCEEEEEECSSSSCEEEEESS
T ss_pred hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEE--EEecCCceEEEEECCCCCeEEEEccC
Confidence 345566677888866 6666643221110001 22355554332210 011 11234456666654 5677777788
Q ss_pred CeEEEEEecCC---C-ceec-C-CCceEEEE--EeC-CCEEEEEEeCCeEEEEEEcCCCC-----CceeeeeeeecCcce
Q psy14552 96 GRLIYFEMHPV---S-DKKE-S-DKKKIVRC--AVN-QRQIVIALQGGRLIYFEMHPETG-----ILDECSETIQMESEV 161 (290)
Q Consensus 96 g~i~~~~~~~~---~-~~~~-~-~~~~Ii~a--s~~-~~~l~Val~~~~i~~l~l~~~~~-----~l~~~~~~~~l~~ei 161 (290)
|.|..+.+... . .... . ....+.+. +.+ +..++.+..|+.|+++.+..... ..............|
T Consensus 89 g~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v 168 (416)
T 2pm9_A 89 GSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEV 168 (416)
T ss_dssp SCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCC
T ss_pred CeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCe
Confidence 99988877541 1 1111 1 11123222 333 55677777799999988765210 110110011245678
Q ss_pred eEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCC
Q psy14552 162 LCMALSNAPSGEQMSRFLAVGLADNTVRLISLAP 195 (290)
Q Consensus 162 ~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~ 195 (290)
.++++.+. ...++++|..||.+.+|.+..
T Consensus 169 ~~~~~~~~-----~~~~l~~~~~dg~v~iwd~~~ 197 (416)
T 2pm9_A 169 ISLAWNQS-----LAHVFASAGSSNFASIWDLKA 197 (416)
T ss_dssp CEEEECSS-----CTTEEEEESSSSCEEEEETTT
T ss_pred eEEEeCCC-----CCcEEEEEcCCCCEEEEECCC
Confidence 88888643 257899999999999999864
No 50
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=96.25 E-value=0.45 Score=43.32 Aligned_cols=148 Identities=9% Similarity=0.042 Sum_probs=80.9
Q ss_pred ceEEEEeeCCeEEEEEecC---CC----ceecCCCceEEEE--EeCCCEEEEEEeCCeEEEEEEcCC-CCCceeeee---
Q psy14552 87 RQIVIALQGGRLIYFEMHP---VS----DKKESDKKKIVRC--AVNQRQIVIALQGGRLIYFEMHPE-TGILDECSE--- 153 (290)
Q Consensus 87 ~qv~ial~~g~i~~~~~~~---~~----~~~~~~~~~Ii~a--s~~~~~l~Val~~~~i~~l~l~~~-~~~l~~~~~--- 153 (290)
.+++.+-.+|.|....+.. .. .+.......|.+. +.++..++.|..|+.|+++.++.+ ++.......
T Consensus 77 ~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~ 156 (437)
T 3gre_A 77 PYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCEC 156 (437)
T ss_dssp CEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEE
T ss_pred CEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccce
Confidence 5677777788888777643 11 1111112234333 345667888888999999988521 122211111
Q ss_pred --eee-----cCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEecCCcceEEEEEEecCCCCCC
Q psy14552 154 --TIQ-----MESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTS 226 (290)
Q Consensus 154 --~~~-----l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~~~~~~~~~~~ 226 (290)
... ....+.++.....+ ...++++|..||.|.+|.+.....+.......-.....++.+.
T Consensus 157 i~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s--------- 223 (437)
T 3gre_A 157 IRKINLKNFGKNEYAVRMRAFVNE----EKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICID--------- 223 (437)
T ss_dssp EEEEEGGGGSSCCCEEEEEEEECS----SCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEEC---------
T ss_pred eEEEEccCcccccCceEEEEEEcC----CCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEEC---------
Confidence 111 12334444433222 2578999999999999998643333322110001222333321
Q ss_pred CCCCCCCccCCceEEEEEecCceEEEEEEe
Q psy14552 227 SDEPAGPVTLGNLYLYVGLQNGALLRMVVD 256 (290)
Q Consensus 227 ~~~~~~~~~~~~~~L~iGl~dG~l~~~~~d 256 (290)
....+|+.|-.||.+.-|.+.
T Consensus 224 ---------~~~~~l~s~~~dg~i~iwd~~ 244 (437)
T 3gre_A 224 ---------EECCVLILGTTRGIIDIWDIR 244 (437)
T ss_dssp ---------TTSCEEEEEETTSCEEEEETT
T ss_pred ---------CCCCEEEEEcCCCeEEEEEcC
Confidence 124569999999998877653
No 51
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=96.24 E-value=0.63 Score=41.90 Aligned_cols=157 Identities=10% Similarity=0.085 Sum_probs=84.1
Q ss_pred eEEEEeec--CceEEEEeeCCeEEEEEecCCCceec-CCC-ceEEEE--EeCCCE-EEEEEeCCeEEEEEEcCCCCCcee
Q psy14552 78 KIVRCAVN--QRQIVIALQGGRLIYFEMHPVSDKKE-SDK-KKIVRC--AVNQRQ-IVIALQGGRLIYFEMHPETGILDE 150 (290)
Q Consensus 78 ~Iv~as~n--~~qv~ial~~g~i~~~~~~~~~~~~~-~~~-~~Ii~a--s~~~~~-l~Val~~~~i~~l~l~~~~~~l~~ 150 (290)
.|.+++.+ ..+++.+-.+|.|....+........ ..+ ..+.+. +.++.. ++-+..|++|++..+.. +....
T Consensus 129 ~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~--~~~~~ 206 (344)
T 4gqb_B 129 IVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRC--PKPAS 206 (344)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTS--SSCEE
T ss_pred CEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccc--cceee
Confidence 45555554 56777777788887776643221111 111 223222 334433 55566799999998764 22111
Q ss_pred eeeeeecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEecCCcceEEEEEEecCCCCCCCCCC
Q psy14552 151 CSETIQMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEP 230 (290)
Q Consensus 151 ~~~~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~~~~~~~~~~~~~~~ 230 (290)
.+....-...+.++++.+. ...+++.|..||.|.+|.+.....+.... .-.....++ .+..
T Consensus 207 ~~~~~~~~~~~~~~~~~p~-----~~~~l~sg~~dg~v~~wd~~~~~~~~~~~--~h~~~v~~v---~fsp--------- 267 (344)
T 4gqb_B 207 QIGCSAPGYLPTSLAWHPQ-----QSEVFVFGDENGTVSLVDTKSTSCVLSSA--VHSQCVTGL---VFSP--------- 267 (344)
T ss_dssp ECC----CCCEEEEEECSS-----CTTEEEEEETTSEEEEEESCC--CCEEEE--CCSSCEEEE---EECS---------
T ss_pred eeecceeeccceeeeecCC-----CCcceEEeccCCcEEEEECCCCcEEEEEc--CCCCCEEEE---EEcc---------
Confidence 1111122345777877643 25788999999999999986433332221 111122333 2211
Q ss_pred CCCccCCceEEEEEecCceEEEEEEeCCCCcc
Q psy14552 231 AGPVTLGNLYLYVGLQNGALLRMVVDQTSGDL 262 (290)
Q Consensus 231 ~~~~~~~~~~L~iGl~dG~l~~~~~d~~~~~l 262 (290)
.+..+|..|-.||.+.-+ |..++++
T Consensus 268 -----~g~~~lasgs~D~~i~vw--d~~~~~~ 292 (344)
T 4gqb_B 268 -----HSVPFLASLSEDCSLAVL--DSSLSEL 292 (344)
T ss_dssp -----SSSCCEEEEETTSCEEEE--CTTCCEE
T ss_pred -----CCCeEEEEEeCCCeEEEE--ECCCCcE
Confidence 233457778889987665 4455543
No 52
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=96.24 E-value=0.55 Score=41.15 Aligned_cols=151 Identities=9% Similarity=-0.030 Sum_probs=92.7
Q ss_pred CceEEEEeec--CceEEEEeeCCeEEEEEecCCCceec------CCCceEEEE--EeCCCEEEEEEeCCeEEEEEEcCC-
Q psy14552 76 KKKIVRCAVN--QRQIVIALQGGRLIYFEMHPVSDKKE------SDKKKIVRC--AVNQRQIVIALQGGRLIYFEMHPE- 144 (290)
Q Consensus 76 ~~~Iv~as~n--~~qv~ial~~g~i~~~~~~~~~~~~~------~~~~~Ii~a--s~~~~~l~Val~~~~i~~l~l~~~- 144 (290)
...|.+++.+ ..+++.+..+|.+..+.++....|.. +....+.+. +.++..++.+..|+.|+++.+...
T Consensus 96 ~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~ 175 (372)
T 1k8k_C 96 NRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKE 175 (372)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTT
T ss_pred CCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEccccc
Confidence 4456666554 66788888889998877765443211 122234333 345667888888999999986410
Q ss_pred ---------------CCCceeeeeee-ecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEecC
Q psy14552 145 ---------------TGILDECSETI-QMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLP 208 (290)
Q Consensus 145 ---------------~~~l~~~~~~~-~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~ 208 (290)
.+. ..... .-...+.++.+.+. ..++++|..||.+.+|.+.....+... ...
T Consensus 176 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~v~~~~~~~~------~~~l~~~~~d~~i~i~d~~~~~~~~~~---~~~ 243 (372)
T 1k8k_C 176 VEERPAPTPWGSKMPFGE---LMFESSSSCGWVHGVCFSAN------GSRVAWVSHDSTVCLADADKKMAVATL---ASE 243 (372)
T ss_dssp TSCCCCCBTTBSCCCTTC---EEEECCCCSSCEEEEEECSS------SSEEEEEETTTEEEEEEGGGTTEEEEE---ECS
T ss_pred ccccccccccccccchhh---heEecCCCCCeEEEEEECCC------CCEEEEEeCCCEEEEEECCCCceeEEE---ccC
Confidence 011 11112 23456888888642 468999999999999998644333332 222
Q ss_pred C-cceEEEEEEecCCCCCCCCCCCCCccCCceEEEEEecCceEEEEEEeC
Q psy14552 209 D-LAESLVMIEMGASDPTSSDEPAGPVTLGNLYLYVGLQNGALLRMVVDQ 257 (290)
Q Consensus 209 ~-~p~Sl~~~~~~~~~~~~~~~~~~~~~~~~~~L~iGl~dG~l~~~~~d~ 257 (290)
. ...++.... ...+|.+| .||.+.-|.++.
T Consensus 244 ~~~v~~~~~~~------------------~~~~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 244 TLPLLAVTFIT------------------ESSLVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp SCCEEEEEEEE------------------TTEEEEEE-TTSSCEEEEEET
T ss_pred CCCeEEEEEec------------------CCCEEEEE-eCCeEEEEEccC
Confidence 2 234444432 23468888 999999998866
No 53
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=96.23 E-value=0.71 Score=42.31 Aligned_cols=147 Identities=11% Similarity=0.112 Sum_probs=87.8
Q ss_pred ceEEEEeec----CceEEEEeeCCeEEEEEecCCCcee------------------------cCCCceEEEE-EeCCCEE
Q psy14552 77 KKIVRCAVN----QRQIVIALQGGRLIYFEMHPVSDKK------------------------ESDKKKIVRC-AVNQRQI 127 (290)
Q Consensus 77 ~~Iv~as~n----~~qv~ial~~g~i~~~~~~~~~~~~------------------------~~~~~~Ii~a-s~~~~~l 127 (290)
..|.+.+.+ ..+++.+..+|.|..+.+....... ...+..-+.+ +.++..+
T Consensus 204 ~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l 283 (464)
T 3v7d_B 204 STVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIV 283 (464)
T ss_dssp SCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEE
T ss_pred CccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEE
Confidence 445554443 3677778888888887765322110 0011111233 5566778
Q ss_pred EEEEeCCeEEEEEEcCCCCCceeeeeee-ecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEe
Q psy14552 128 VIALQGGRLIYFEMHPETGILDECSETI-QMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQG 206 (290)
Q Consensus 128 ~Val~~~~i~~l~l~~~~~~l~~~~~~~-~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~ 206 (290)
+.+..|+.|+++.+.. +. . .... .-...|.++.+.+. ..++++|..||.+.+|.+.....+..
T Consensus 284 ~~~~~d~~i~vwd~~~--~~--~-~~~~~~~~~~v~~~~~~~~------~~~l~sg~~dg~i~vwd~~~~~~~~~----- 347 (464)
T 3v7d_B 284 VSGSYDNTLIVWDVAQ--MK--C-LYILSGHTDRIYSTIYDHE------RKRCISASMDTTIRIWDLENGELMYT----- 347 (464)
T ss_dssp EEEETTSCEEEEETTT--TE--E-EEEECCCSSCEEEEEEETT------TTEEEEEETTSCEEEEETTTTEEEEE-----
T ss_pred EEEeCCCeEEEEECCC--Cc--E-EEEecCCCCCEEEEEEcCC------CCEEEEEeCCCcEEEEECCCCcEEEE-----
Confidence 8888899999998765 22 1 1122 23567888888643 46899999999999999864322222
Q ss_pred cCCcceEEEEEEecCCCCCCCCCCCCCccCCceEEEEEecCceEEEEEEe
Q psy14552 207 LPDLAESLVMIEMGASDPTSSDEPAGPVTLGNLYLYVGLQNGALLRMVVD 256 (290)
Q Consensus 207 L~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~~~~~L~iGl~dG~l~~~~~d 256 (290)
+..-...+..+.+ . ..+|+.|-.||.+.-+.+.
T Consensus 348 ~~~h~~~v~~~~~----------------~-~~~l~s~s~dg~v~vwd~~ 380 (464)
T 3v7d_B 348 LQGHTALVGLLRL----------------S-DKFLVSAAADGSIRGWDAN 380 (464)
T ss_dssp ECCCSSCEEEEEE----------------C-SSEEEEEETTSEEEEEETT
T ss_pred EeCCCCcEEEEEE----------------c-CCEEEEEeCCCcEEEEECC
Confidence 1111112222332 1 2369999999998877653
No 54
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=96.22 E-value=0.61 Score=41.50 Aligned_cols=152 Identities=12% Similarity=0.099 Sum_probs=86.5
Q ss_pred ceEEEEeec--CceEEEEeeCCeEEEEEecCCCcee----cCCC-ceEEEE--EeCCCEEEEEEeCCeEEEEEEcCCCCC
Q psy14552 77 KKIVRCAVN--QRQIVIALQGGRLIYFEMHPVSDKK----ESDK-KKIVRC--AVNQRQIVIALQGGRLIYFEMHPETGI 147 (290)
Q Consensus 77 ~~Iv~as~n--~~qv~ial~~g~i~~~~~~~~~~~~----~~~~-~~Ii~a--s~~~~~l~Val~~~~i~~l~l~~~~~~ 147 (290)
..|.+++.+ ..+++.+-.+|.+.....+.. ++. ...+ ..+.+. +.++..++.+..|++|++..++.. ..
T Consensus 62 ~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~-~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~-~~ 139 (345)
T 3fm0_A 62 RTVRKVAWSPCGNYLASASFDATTCIWKKNQD-DFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEE-DE 139 (345)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEEECCC--EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTT-SC
T ss_pred CcEEEEEECCCCCEEEEEECCCcEEEEEccCC-CeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCC-CC
Confidence 345555554 556776767787776655422 111 1111 224333 455677888888999999998752 22
Q ss_pred ceeeeeee-ecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEecCCcceEEEEEEecCCCCCC
Q psy14552 148 LDECSETI-QMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTS 226 (290)
Q Consensus 148 l~~~~~~~-~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~~~~~~~~~~~ 226 (290)
. ...... .-...|.++.+.+. ..+|+.|..||.+.+|.+.... .... ..+..-...+.-+.+.
T Consensus 140 ~-~~~~~~~~h~~~v~~~~~~p~------~~~l~s~s~d~~i~~w~~~~~~-~~~~--~~~~~h~~~v~~l~~s------ 203 (345)
T 3fm0_A 140 Y-ECVSVLNSHTQDVKHVVWHPS------QELLASASYDDTVKLYREEEDD-WVCC--ATLEGHESTVWSLAFD------ 203 (345)
T ss_dssp E-EEEEEECCCCSCEEEEEECSS------SSCEEEEETTSCEEEEEEETTE-EEEE--EEECCCSSCEEEEEEC------
T ss_pred e-EEEEEecCcCCCeEEEEECCC------CCEEEEEeCCCcEEEEEecCCC-EEEE--EEecCCCCceEEEEEC------
Confidence 1 211112 13456888888643 4689999999999999976432 1111 1222111122223331
Q ss_pred CCCCCCCccCCceEEEEEecCceEEEEEE
Q psy14552 227 SDEPAGPVTLGNLYLYVGLQNGALLRMVV 255 (290)
Q Consensus 227 ~~~~~~~~~~~~~~L~iGl~dG~l~~~~~ 255 (290)
....+|..|-.||.+.-+..
T Consensus 204 ---------p~g~~l~s~s~D~~v~iW~~ 223 (345)
T 3fm0_A 204 ---------PSGQRLASCSDDRTVRIWRQ 223 (345)
T ss_dssp ---------TTSSEEEEEETTSCEEEEEE
T ss_pred ---------CCCCEEEEEeCCCeEEEecc
Confidence 12346888999999887765
No 55
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=96.21 E-value=0.63 Score=42.03 Aligned_cols=65 Identities=18% Similarity=0.199 Sum_probs=48.4
Q ss_pred EeCCCEEEEEEeCCeEEEEEEcCCCCCceeeeeee-e-cCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCC
Q psy14552 121 AVNQRQIVIALQGGRLIYFEMHPETGILDECSETI-Q-MESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQ 196 (290)
Q Consensus 121 s~~~~~l~Val~~~~i~~l~l~~~~~~l~~~~~~~-~-l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~ 196 (290)
+.++..++.|..|++|+++.+.. ++ . +... . -...|.+++|.|. ..+|+.|..|++|++|.++++
T Consensus 278 Spdg~~lasgs~D~~V~iwd~~~--~~--~-~~~~~~gH~~~V~~v~fSpd------g~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 278 DMKGELAVLASNDNSIALVKLKD--LS--M-SKIFKQAHSFAITEVTISPD------STYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp CTTSCEEEEEETTSCEEEEETTT--TE--E-EEEETTSSSSCEEEEEECTT------SCEEEEEETTSEEEEEECCTT
T ss_pred CCCCCceEEEcCCCEEEEEECCC--Cc--E-EEEecCcccCCEEEEEECCC------CCEEEEEeCCCeEEEEEcCCC
Confidence 45677799998999999998764 32 1 2222 1 2457999999753 479999999999999999753
No 56
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=96.20 E-value=0.55 Score=40.78 Aligned_cols=155 Identities=8% Similarity=0.066 Sum_probs=88.0
Q ss_pred ceEEEEeec--CceEEEEeeCCeEEEEEecCCCceec-CCCceEEEEE----eCCCEEEEEEeCCeEEEEEEcCCCCCce
Q psy14552 77 KKIVRCAVN--QRQIVIALQGGRLIYFEMHPVSDKKE-SDKKKIVRCA----VNQRQIVIALQGGRLIYFEMHPETGILD 149 (290)
Q Consensus 77 ~~Iv~as~n--~~qv~ial~~g~i~~~~~~~~~~~~~-~~~~~Ii~as----~~~~~l~Val~~~~i~~l~l~~~~~~l~ 149 (290)
..|.+++.+ ..+++.+..+|.|..+.+........ .....+.+.+ .++..++.+..|+.|+++.+.. +..
T Consensus 87 ~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~--~~~- 163 (368)
T 3mmy_A 87 GPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRS--SNP- 163 (368)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSC--SSC-
T ss_pred CCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCC--CcE-
Confidence 345555554 55777777788888777653321111 1112232222 2344477777899999998765 221
Q ss_pred eeeeeeecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEecCCcceEEEEEEecCCCCCCCCC
Q psy14552 150 ECSETIQMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDE 229 (290)
Q Consensus 150 ~~~~~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~~~~~~~~~~~~~~ 229 (290)
......+..+.++... ...++++..++.+.+|.++...................+.+..-.
T Consensus 164 --~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 224 (368)
T 3mmy_A 164 --MMVLQLPERCYCADVI--------YPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDK--------- 224 (368)
T ss_dssp --SEEEECSSCEEEEEEE--------TTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECT---------
T ss_pred --EEEEecCCCceEEEec--------CCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccC---------
Confidence 2344556667666653 457889999999999998643211111111111222333333211
Q ss_pred CCCCccCCceEEEEEecCceEEEEEEeCC
Q psy14552 230 PAGPVTLGNLYLYVGLQNGALLRMVVDQT 258 (290)
Q Consensus 230 ~~~~~~~~~~~L~iGl~dG~l~~~~~d~~ 258 (290)
......+.+|-.||.+.-|.++..
T Consensus 225 -----~~~~~~~~~~~~dg~i~i~~~~~~ 248 (368)
T 3mmy_A 225 -----QNKPTGFALGSIEGRVAIHYINPP 248 (368)
T ss_dssp -----TSCEEEEEEEETTSEEEEEESSCS
T ss_pred -----CCCCCeEEEecCCCcEEEEecCCC
Confidence 112334999999999988877543
No 57
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=96.16 E-value=0.64 Score=41.19 Aligned_cols=117 Identities=21% Similarity=0.274 Sum_probs=74.9
Q ss_pred EeCCCEEEEEE-eCCeEEEEEEcCCCCCceeeeeeee-cC---cceeEEEeeeCCCCCccccEEEEEeC--CCeEEEEEe
Q psy14552 121 AVNQRQIVIAL-QGGRLIYFEMHPETGILDECSETIQ-ME---SEVLCMALSNAPSGEQMSRFLAVGLA--DNTVRLISL 193 (290)
Q Consensus 121 s~~~~~l~Val-~~~~i~~l~l~~~~~~l~~~~~~~~-l~---~ei~~l~i~~~~~~~~~~~~l~VGl~--dg~v~i~~l 193 (290)
+.++..++++. .++.|.++.++. +.+... .... .+ ..+..+.+.+. ..+|+++.. ++.+.+|.+
T Consensus 219 spdg~~l~v~~~~~~~v~v~~~~~--g~~~~~-~~~~~~~~~~~~~~~i~~spd------g~~l~v~~~~~~~~i~v~~~ 289 (361)
T 3scy_A 219 NSDGKFAYLINEIGGTVIAFRYAD--GMLDEI-QTVAADTVNAQGSGDIHLSPD------GKYLYASNRLKADGVAIFKV 289 (361)
T ss_dssp CTTSSEEEEEETTTCEEEEEEEET--TEEEEE-EEEESCSSCCCCEEEEEECTT------SSEEEEEECSSSCEEEEEEE
T ss_pred cCCCCEEEEEcCCCCeEEEEEecC--CceEEe-EEEecCCCCCCCcccEEECCC------CCEEEEECCCCCCEEEEEEE
Confidence 55666777776 478899998874 444332 2222 22 23556666542 357777765 589999999
Q ss_pred CCC-CceeEeeEEecCCcceEEEEEEecCCCCCCCCCCCCCccCCceEEEEEe-cCceEEEEEEeCCCCcccc
Q psy14552 194 APQ-DCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAGPVTLGNLYLYVGL-QNGALLRMVVDQTSGDLSD 264 (290)
Q Consensus 194 ~~~-~~l~~~~~~~L~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~~~~~L~iGl-~dG~l~~~~~d~~~~~l~~ 264 (290)
++. ..++.+.....+..|+.+.+.. +++ +|+++- .+|.+.-|.+|..+|.+..
T Consensus 290 ~~~~g~~~~~~~~~~g~~~~~~~~sp-----------------dg~-~l~~~~~~~~~v~v~~~d~~~g~~~~ 344 (361)
T 3scy_A 290 DETNGTLTKVGYQLTGIHPRNFIITP-----------------NGK-YLLVACRDTNVIQIFERDQATGLLTD 344 (361)
T ss_dssp CTTTCCEEEEEEEECSSCCCEEEECT-----------------TSC-EEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred cCCCCcEEEeeEecCCCCCceEEECC-----------------CCC-EEEEEECCCCCEEEEEEECCCCcEee
Confidence 743 3455554444456788776542 233 577776 6788888999998887754
No 58
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=96.15 E-value=0.67 Score=41.30 Aligned_cols=153 Identities=10% Similarity=0.131 Sum_probs=89.1
Q ss_pred ceEEEEeecC---ceEEEEeeCCeEEEEEecCCCceec----CCCceEEEEE--e-CCCEEEEEEeCCeEEEEEEcCCCC
Q psy14552 77 KKIVRCAVNQ---RQIVIALQGGRLIYFEMHPVSDKKE----SDKKKIVRCA--V-NQRQIVIALQGGRLIYFEMHPETG 146 (290)
Q Consensus 77 ~~Iv~as~n~---~qv~ial~~g~i~~~~~~~~~~~~~----~~~~~Ii~as--~-~~~~l~Val~~~~i~~l~l~~~~~ 146 (290)
..|.+++.+. .+++.+..+|.|..+.+........ .....|.+.+ . ++..++.+..|+.|+++.+.. .
T Consensus 74 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~--~ 151 (383)
T 3ei3_B 74 RRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG--S 151 (383)
T ss_dssp SCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS--C
T ss_pred CCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC--C
Confidence 3455555552 5677777788888887753321111 1222343333 3 334577777899999998764 2
Q ss_pred CceeeeeeeecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEecCCcceEEEEEEecCCCCCC
Q psy14552 147 ILDECSETIQMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTS 226 (290)
Q Consensus 147 ~l~~~~~~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~~~~~~~~~~~ 226 (290)
.+.........+..+.++++.+. ..++++|..||.+.+|.+.. ..+.... .-.....++....
T Consensus 152 ~~~~~~~~~~~~~~v~~~~~~~~------~~~l~~~~~d~~i~i~d~~~-~~~~~~~--~h~~~v~~~~~~~-------- 214 (383)
T 3ei3_B 152 VIQVFAKTDSWDYWYCCVDVSVS------RQMLATGDSTGRLLLLGLDG-HEIFKEK--LHKAKVTHAEFNP-------- 214 (383)
T ss_dssp EEEEEECCCCSSCCEEEEEEETT------TTEEEEEETTSEEEEEETTS-CEEEEEE--CSSSCEEEEEECS--------
T ss_pred ceEEEeccCCCCCCeEEEEECCC------CCEEEEECCCCCEEEEECCC-CEEEEec--cCCCcEEEEEECC--------
Confidence 22221111123466889988753 46899999999999999842 2222221 1112223333321
Q ss_pred CCCCCCCccCCceEEEEEecCceEEEEEEeC
Q psy14552 227 SDEPAGPVTLGNLYLYVGLQNGALLRMVVDQ 257 (290)
Q Consensus 227 ~~~~~~~~~~~~~~L~iGl~dG~l~~~~~d~ 257 (290)
.+..+|+.|-.||.+.-|.+..
T Consensus 215 ---------~~~~~l~s~~~d~~i~iwd~~~ 236 (383)
T 3ei3_B 215 ---------RCDWLMATSSVDATVKLWDLRN 236 (383)
T ss_dssp ---------SCTTEEEEEETTSEEEEEEGGG
T ss_pred ---------CCCCEEEEEeCCCEEEEEeCCC
Confidence 2333689999999998887643
No 59
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=96.15 E-value=0.78 Score=42.01 Aligned_cols=155 Identities=14% Similarity=0.180 Sum_probs=88.6
Q ss_pred ceEEEEeec--CceEEEEeeCCeEEEEEecCCCceec-CCCc-eE--EEEEeCCCEEEEEEeCCeEEEEEEcCCCCCcee
Q psy14552 77 KKIVRCAVN--QRQIVIALQGGRLIYFEMHPVSDKKE-SDKK-KI--VRCAVNQRQIVIALQGGRLIYFEMHPETGILDE 150 (290)
Q Consensus 77 ~~Iv~as~n--~~qv~ial~~g~i~~~~~~~~~~~~~-~~~~-~I--i~as~~~~~l~Val~~~~i~~l~l~~~~~~l~~ 150 (290)
..|.+++.. ..+++.+-.+|.|....+........ ..+. .+ ++.+.++..++.|..|++|+++.+.. +....
T Consensus 193 ~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~--~~~~~ 270 (410)
T 1vyh_C 193 HNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVAT--KECKA 270 (410)
T ss_dssp SCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT--CCEEE
T ss_pred CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCC--Cceee
Confidence 346665554 56777777888888877653321111 1111 12 22234556688887899999998765 22111
Q ss_pred eeeeeecCcceeEEEeeeCCC--------C------CccccEEEEEeCCCeEEEEEeCCCCceeEeeEEecCCcceEEEE
Q psy14552 151 CSETIQMESEVLCMALSNAPS--------G------EQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVM 216 (290)
Q Consensus 151 ~~~~~~l~~ei~~l~i~~~~~--------~------~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~ 216 (290)
. -..-+..|.|+++.+... + .....+++.|..||.|.+|.+.....+.... .-.....++.+
T Consensus 271 ~--~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~--~h~~~v~~v~~ 346 (410)
T 1vyh_C 271 E--LREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLV--GHDNWVRGVLF 346 (410)
T ss_dssp E--ECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEE--CCSSCEEEEEE
T ss_pred E--ecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEE--CCCCcEEEEEE
Confidence 1 112356788888865320 0 0014689999999999999986432222221 11122233332
Q ss_pred EEecCCCCCCCCCCCCCccCCceEEEEEecCceEEEEEE
Q psy14552 217 IEMGASDPTSSDEPAGPVTLGNLYLYVGLQNGALLRMVV 255 (290)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~L~iGl~dG~l~~~~~ 255 (290)
. ....+|+.|-.||.+.-+.+
T Consensus 347 ~------------------~~g~~l~s~s~D~~i~vwd~ 367 (410)
T 1vyh_C 347 H------------------SGGKFILSCADDKTLRVWDY 367 (410)
T ss_dssp C------------------SSSSCEEEEETTTEEEEECC
T ss_pred c------------------CCCCEEEEEeCCCeEEEEEC
Confidence 2 12345889999999887754
No 60
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=96.09 E-value=0.39 Score=41.05 Aligned_cols=116 Identities=18% Similarity=0.188 Sum_probs=70.4
Q ss_pred EeCCCEEEEEEeCCeEEEEEEcCCCCCceeeeeee-ecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCc-
Q psy14552 121 AVNQRQIVIALQGGRLIYFEMHPETGILDECSETI-QMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDC- 198 (290)
Q Consensus 121 s~~~~~l~Val~~~~i~~l~l~~~~~~l~~~~~~~-~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~- 198 (290)
+.++..++.|..|+.|+++.+....... ...... .-...|.++++.+.. ...+|++|..||.|.+|.++....
T Consensus 20 ~~~~~~l~~~~~dg~i~iw~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~----d~~~l~s~~~dg~v~vwd~~~~~~~ 94 (351)
T 3f3f_A 20 DFYGRHVATCSSDQHIKVFKLDKDTSNW-ELSDSWRAHDSSIVAIDWASPE----YGRIIASASYDKTVKLWEEDPDQEE 94 (351)
T ss_dssp CSSSSEEEEEETTSEEEEEEECSSSCCE-EEEEEEECCSSCEEEEEECCGG----GCSEEEEEETTSCEEEEEECTTSCT
T ss_pred cCCCCEEEEeeCCCeEEEEECCCCCCcc-eecceeccCCCcEEEEEEcCCC----CCCEEEEEcCCCeEEEEecCCCccc
Confidence 4556678888889999999988521111 222222 246779999986431 147899999999999999975321
Q ss_pred -----eeEeeEEecCCcceEEEEEEecCCCCCCCCCCCCCccCCceEEEEEecCceEEEEEEe
Q psy14552 199 -----LKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAGPVTLGNLYLYVGLQNGALLRMVVD 256 (290)
Q Consensus 199 -----l~~~~~~~L~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~~~~~L~iGl~dG~l~~~~~d 256 (290)
..... .+..-...+.-+.+... ....+|+.|-.||.+.-|.+.
T Consensus 95 ~~~~~~~~~~--~~~~~~~~v~~~~~~~~-------------~~~~~l~~~~~dg~v~iwd~~ 142 (351)
T 3f3f_A 95 CSGRRWNKLC--TLNDSKGSLYSVKFAPA-------------HLGLKLACLGNDGILRLYDAL 142 (351)
T ss_dssp TSSCSEEEEE--EECCCSSCEEEEEECCG-------------GGCSEEEEEETTCEEEEEECS
T ss_pred ccccCcceee--eecccCCceeEEEEcCC-------------CCCcEEEEecCCCcEEEecCC
Confidence 12221 12211222222333111 114569999999999988764
No 61
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.09 E-value=1.2 Score=43.82 Aligned_cols=151 Identities=10% Similarity=0.067 Sum_probs=87.7
Q ss_pred eEEEEeec--CceEEEEeeCCeEEEEEecCCCceec---CCCceEEEE--Ee-CCCEEEEEEeCCeEEEEEEcCCCCCce
Q psy14552 78 KIVRCAVN--QRQIVIALQGGRLIYFEMHPVSDKKE---SDKKKIVRC--AV-NQRQIVIALQGGRLIYFEMHPETGILD 149 (290)
Q Consensus 78 ~Iv~as~n--~~qv~ial~~g~i~~~~~~~~~~~~~---~~~~~Ii~a--s~-~~~~l~Val~~~~i~~l~l~~~~~~l~ 149 (290)
.|.+.+.+ .++++.+..+|.|..+.+.....+.. .....+.++ +. ++..++.+..|+.|+++.+.. +...
T Consensus 99 ~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~--~~~~ 176 (814)
T 3mkq_A 99 YIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQ--STPN 176 (814)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTC--SSCS
T ss_pred CEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCC--Ccce
Confidence 35555544 56788888888888877654322211 112223333 33 344588888899999998764 2211
Q ss_pred eeeeeeecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEecCCcceEEEEEEecCCCCCCCCC
Q psy14552 150 ECSETIQMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDE 229 (290)
Q Consensus 150 ~~~~~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~~~~~~~~~~~~~~ 229 (290)
... ....+..+.++++.+.+ ...++++|..||.+.+|.+.....+.... .-.....++...
T Consensus 177 ~~~-~~~~~~~v~~~~~~~~~----~~~~l~~~~~dg~i~~~d~~~~~~~~~~~--~~~~~v~~~~~~------------ 237 (814)
T 3mkq_A 177 FTL-TTGQERGVNYVDYYPLP----DKPYMITASDDLTIKIWDYQTKSCVATLE--GHMSNVSFAVFH------------ 237 (814)
T ss_dssp EEE-ECCCTTCCCEEEECCST----TCCEEEEECTTSEEEEEETTTTEEEEEEE--CCSSCEEEEEEC------------
T ss_pred eEE-ecCCCCCEEEEEEEECC----CCCEEEEEeCCCEEEEEECCCCcEEEEEc--CCCCCEEEEEEc------------
Confidence 111 11234678888887642 24689999999999999986432222221 111122232222
Q ss_pred CCCCccCCceEEEEEecCceEEEEEE
Q psy14552 230 PAGPVTLGNLYLYVGLQNGALLRMVV 255 (290)
Q Consensus 230 ~~~~~~~~~~~L~iGl~dG~l~~~~~ 255 (290)
....+|++|-.||.+.-|.+
T Consensus 238 ------~~~~~l~~~~~dg~v~vwd~ 257 (814)
T 3mkq_A 238 ------PTLPIIISGSEDGTLKIWNS 257 (814)
T ss_dssp ------SSSSEEEEEETTSCEEEEET
T ss_pred ------CCCCEEEEEeCCCeEEEEEC
Confidence 12236999999999887754
No 62
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=96.09 E-value=0.56 Score=39.86 Aligned_cols=139 Identities=9% Similarity=0.080 Sum_probs=81.6
Q ss_pred ecCceEEEEeeCCeEEEEEecCCCcee----cC-CCceEEEEEeCCCEEEEEEeCCeEEEEEEcCCCCCceeeeeeeecC
Q psy14552 84 VNQRQIVIALQGGRLIYFEMHPVSDKK----ES-DKKKIVRCAVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQME 158 (290)
Q Consensus 84 ~n~~qv~ial~~g~i~~~~~~~~~~~~----~~-~~~~Ii~as~~~~~l~Val~~~~i~~l~l~~~~~~l~~~~~~~~l~ 158 (290)
-+..+++.+..+|.+..+.+....... .. ....+.+.+.++..++.+..|+.|+++. . +.... ......
T Consensus 69 ~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d--~--~~~~~--~~~~~~ 142 (313)
T 3odt_A 69 SEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWK--E--GSLVY--NLQAHN 142 (313)
T ss_dssp TTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEEETTEEEEEETTSEEEEEE--T--TEEEE--EEECCS
T ss_pred CCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEecCCEEEEEeCCCCEEEEc--C--CcEEE--ecccCC
Confidence 346778888888888777664332111 11 1222333355667788888899999987 2 21111 112245
Q ss_pred cceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEecCCcceEEEEEEecCCCCCCCCCCCCCccCCc
Q psy14552 159 SEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAGPVTLGN 238 (290)
Q Consensus 159 ~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~~~ 238 (290)
..+.++.+.+.+ ..++++|..||.+.+|.... ...... ........++.... .+.
T Consensus 143 ~~v~~~~~~~~~-----~~~l~~~~~d~~i~i~d~~~--~~~~~~-~~~~~~i~~~~~~~-----------------~~~ 197 (313)
T 3odt_A 143 ASVWDAKVVSFS-----ENKFLTASADKTIKLWQNDK--VIKTFS-GIHNDVVRHLAVVD-----------------DGH 197 (313)
T ss_dssp SCEEEEEEEETT-----TTEEEEEETTSCEEEEETTE--EEEEEC-SSCSSCEEEEEEEE-----------------TTE
T ss_pred CceeEEEEccCC-----CCEEEEEECCCCEEEEecCc--eEEEEe-ccCcccEEEEEEcC-----------------CCe
Confidence 677788776542 56899999999999998331 111110 01122334444432 223
Q ss_pred eEEEEEecCceEEEEEE
Q psy14552 239 LYLYVGLQNGALLRMVV 255 (290)
Q Consensus 239 ~~L~iGl~dG~l~~~~~ 255 (290)
++.|-.||.+.-|.+
T Consensus 198 --~~~~~~dg~i~i~d~ 212 (313)
T 3odt_A 198 --FISCSNDGLIKLVDM 212 (313)
T ss_dssp --EEEEETTSEEEEEET
T ss_pred --EEEccCCCeEEEEEC
Confidence 888999998887755
No 63
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=96.06 E-value=1 Score=42.51 Aligned_cols=109 Identities=10% Similarity=0.121 Sum_probs=72.4
Q ss_pred CCceEEEEee--cCceEEEEeeCCeEEEEEecCCCceec-C--CCceEEEE--Ee----------CCCEEEEEEeCCeEE
Q psy14552 75 DKKKIVRCAV--NQRQIVIALQGGRLIYFEMHPVSDKKE-S--DKKKIVRC--AV----------NQRQIVIALQGGRLI 137 (290)
Q Consensus 75 ~~~~Iv~as~--n~~qv~ial~~g~i~~~~~~~~~~~~~-~--~~~~Ii~a--s~----------~~~~l~Val~~~~i~ 137 (290)
....|.+++. ++.+++.+..+|.|..+.+........ . ....+.++ +. ++..++.+..|+.|+
T Consensus 487 ~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~ 566 (615)
T 1pgu_A 487 LRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIF 566 (615)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEE
T ss_pred ccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEE
Confidence 3445666665 577888888889998887754322222 1 22334333 44 666788888899999
Q ss_pred EEEEcCCCCCceeeeeee-ecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeC
Q psy14552 138 YFEMHPETGILDECSETI-QMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLA 194 (290)
Q Consensus 138 ~l~l~~~~~~l~~~~~~~-~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~ 194 (290)
++.++.. ... .... .-...|.++++.+. .. |+.|..||.|.+|+++
T Consensus 567 iw~~~~~-~~~---~~~~~~h~~~v~~l~~s~~------~~-l~s~~~d~~v~iw~~~ 613 (615)
T 1pgu_A 567 IYSVKRP-MKI---IKALNAHKDGVNNLLWETP------ST-LVSSGADACIKRWNVV 613 (615)
T ss_dssp EEESSCT-TCC---EEETTSSTTCEEEEEEEET------TE-EEEEETTSCEEEEEEC
T ss_pred EEECCCC-cee---chhhhcCccceEEEEEcCC------CC-eEEecCCceEEEEeee
Confidence 9998751 121 1111 23578999999864 24 8899999999999986
No 64
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=95.99 E-value=0.87 Score=41.19 Aligned_cols=150 Identities=13% Similarity=0.097 Sum_probs=86.3
Q ss_pred ceEEEEeec--CceEEEEeeCCeEEEEEecCCCcee-cC-CCceE--EEEEeCCCEEEEEE---eCCeEEEEEEcCCCCC
Q psy14552 77 KKIVRCAVN--QRQIVIALQGGRLIYFEMHPVSDKK-ES-DKKKI--VRCAVNQRQIVIAL---QGGRLIYFEMHPETGI 147 (290)
Q Consensus 77 ~~Iv~as~n--~~qv~ial~~g~i~~~~~~~~~~~~-~~-~~~~I--i~as~~~~~l~Val---~~~~i~~l~l~~~~~~ 147 (290)
..|...+.+ .++++.+..+|.|..+.+....... .. ....+ ++.+.++..+++.. .|+.|+++.+.. +.
T Consensus 218 ~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~--~~ 295 (401)
T 4aez_A 218 SEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAAT--GA 295 (401)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTT--CC
T ss_pred CCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCC--CC
Confidence 345555554 6678888888988877765322111 11 11123 22233344444433 489999998875 32
Q ss_pred ceeeeeeeecCcceeEEEeeeCCCCCccccEEEE--EeCCCeEEEEEeCCCCceeEeeE-EecCCcceEEEEEEecCCCC
Q psy14552 148 LDECSETIQMESEVLCMALSNAPSGEQMSRFLAV--GLADNTVRLISLAPQDCLKQKNL-QGLPDLAESLVMIEMGASDP 224 (290)
Q Consensus 148 l~~~~~~~~l~~ei~~l~i~~~~~~~~~~~~l~V--Gl~dg~v~i~~l~~~~~l~~~~~-~~L~~~p~Sl~~~~~~~~~~ 224 (290)
. ......+..+.++.+.+. ..++++ |..||.+.+|.+.... +..... ..-.....++...
T Consensus 296 ~---~~~~~~~~~v~~~~~s~~------~~~l~~~~g~~dg~i~v~~~~~~~-~~~~~~~~~h~~~v~~~~~s------- 358 (401)
T 4aez_A 296 R---VNTVDAGSQVTSLIWSPH------SKEIMSTHGFPDNNLSIWSYSSSG-LTKQVDIPAHDTRVLYSALS------- 358 (401)
T ss_dssp E---EEEEECSSCEEEEEECSS------SSEEEEEECTTTCEEEEEEEETTE-EEEEEEEECCSSCCCEEEEC-------
T ss_pred E---EEEEeCCCcEEEEEECCC------CCeEEEEeecCCCcEEEEecCCcc-ceeEEEecCCCCCEEEEEEC-------
Confidence 2 234456778999988653 456767 5579999999986422 222211 1111222333222
Q ss_pred CCCCCCCCCccCCceEEEEEecCceEEEEEEe
Q psy14552 225 TSSDEPAGPVTLGNLYLYVGLQNGALLRMVVD 256 (290)
Q Consensus 225 ~~~~~~~~~~~~~~~~L~iGl~dG~l~~~~~d 256 (290)
....+|+.|-.||.+.-|.+.
T Consensus 359 -----------~dg~~l~s~~~dg~i~iw~~~ 379 (401)
T 4aez_A 359 -----------PDGRILSTAASDENLKFWRVY 379 (401)
T ss_dssp -----------TTSSEEEEECTTSEEEEEECC
T ss_pred -----------CCCCEEEEEeCCCcEEEEECC
Confidence 123469999999999888764
No 65
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=95.96 E-value=0.049 Score=48.62 Aligned_cols=146 Identities=14% Similarity=0.161 Sum_probs=76.3
Q ss_pred ceEEEEeeCCeEEEEEecCCCceec----C-CCceEEEE--EeCCCEEEEEEeCCeEEEEEEcCCCCCceeeeeeeecCc
Q psy14552 87 RQIVIALQGGRLIYFEMHPVSDKKE----S-DKKKIVRC--AVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQMES 159 (290)
Q Consensus 87 ~qv~ial~~g~i~~~~~~~~~~~~~----~-~~~~Ii~a--s~~~~~l~Val~~~~i~~l~l~~~~~~l~~~~~~~~l~~ 159 (290)
.+++.+..+|.|..+.+... .|.. . ....+.+. +.++..++.+..|+.|+++.+... ..+...........
T Consensus 24 ~~l~~~~~d~~i~iw~~~~~-~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~-~~~~~~~~~~~~~~ 101 (377)
T 3dwl_C 24 TEFVTTTATNQVELYEQDGN-GWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPD-GTWKQTLVLLRLNR 101 (377)
T ss_dssp SEEECCCSSSCBCEEEEETT-EEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC-------CCCCEEECCCCSS
T ss_pred CEEEEecCCCEEEEEEccCC-ceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCC-CceeeeeEecccCC
Confidence 44444445666666665422 1111 1 11224333 345566888888999999988752 11112111123567
Q ss_pred ceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEecCCcceEEEEEEecCCCCCCCCCCCCCccCCce
Q psy14552 160 EVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAGPVTLGNL 239 (290)
Q Consensus 160 ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (290)
.|.++++.+. ..++++|..||.+.+|.++............ +.-...+.-+.+. ....
T Consensus 102 ~v~~~~~~~~------~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~-~~h~~~v~~~~~~---------------~~~~ 159 (377)
T 3dwl_C 102 AATFVRWSPN------EDKFAVGSGARVISVCYFEQENDWWVSKHLK-RPLRSTILSLDWH---------------PNNV 159 (377)
T ss_dssp CEEEEECCTT------SSCCEEEESSSCEEECCC-----CCCCEEEC-SSCCSCEEEEEEC---------------TTSS
T ss_pred ceEEEEECCC------CCEEEEEecCCeEEEEEECCcccceeeeEee-cccCCCeEEEEEc---------------CCCC
Confidence 8889988642 4688999999999999986433211111111 1012222223331 1234
Q ss_pred EEEEEecCceEEEEEEe
Q psy14552 240 YLYVGLQNGALLRMVVD 256 (290)
Q Consensus 240 ~L~iGl~dG~l~~~~~d 256 (290)
+|..|-.||.+.-|.+.
T Consensus 160 ~l~~~~~d~~i~iwd~~ 176 (377)
T 3dwl_C 160 LLAAGCADRKAYVLSAY 176 (377)
T ss_dssp EEEEEESSSCEEEEEEC
T ss_pred EEEEEeCCCEEEEEEEE
Confidence 68999999999888874
No 66
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=95.93 E-value=1.1 Score=42.07 Aligned_cols=104 Identities=16% Similarity=0.168 Sum_probs=65.2
Q ss_pred eEEEEee--cCceEEEEeeCCeEEEEEecCCCceec--CCCceEEEE--EeCCCEEEEEEeCCeEEEEEEcCCCCCceee
Q psy14552 78 KIVRCAV--NQRQIVIALQGGRLIYFEMHPVSDKKE--SDKKKIVRC--AVNQRQIVIALQGGRLIYFEMHPETGILDEC 151 (290)
Q Consensus 78 ~Iv~as~--n~~qv~ial~~g~i~~~~~~~~~~~~~--~~~~~Ii~a--s~~~~~l~Val~~~~i~~l~l~~~~~~l~~~ 151 (290)
.|...+. ++.+++.+..+|.|..+..+. ..... .....+.+. +.++..++.+..|+.|++...+ +.+.
T Consensus 428 ~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~-~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~---~~~~-- 501 (577)
T 2ymu_A 428 SVWGVAFSPDDQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN---GQLL-- 501 (577)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTS-CEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETT---SCEE--
T ss_pred CeEEEEECCCCCEEEEEcCCCEEEEEECCC-CEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCC---CCEE--
Confidence 3444443 466777777888887765432 11111 122234222 4567778888889999998743 3221
Q ss_pred eeeee-cCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeC
Q psy14552 152 SETIQ-MESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLA 194 (290)
Q Consensus 152 ~~~~~-l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~ 194 (290)
+... -...|.++++.+. ..+|+.|..||.|.+|..+
T Consensus 502 -~~~~~h~~~v~~l~~s~d------g~~l~s~~~dg~v~lwd~~ 538 (577)
T 2ymu_A 502 -QTLTGHSSSVRGVAFSPD------GQTIASASDDKTVKLWNRN 538 (577)
T ss_dssp -EEEECCSSCEEEEEECTT------SSCEEEEETTSEEEEECTT
T ss_pred -EEEeCCCCCEEEEEEcCC------CCEEEEEECcCEEEEEeCC
Confidence 2222 3567889988643 4689999999999999864
No 67
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=95.90 E-value=0.86 Score=40.42 Aligned_cols=140 Identities=13% Similarity=0.103 Sum_probs=85.6
Q ss_pred cCceEEEEeeCCeEEEEEecCCCcee-c-CCCceEEEE--EeCCCEEEEEEeCCeEEEEEEcCCCCCceeeeeeeecCcc
Q psy14552 85 NQRQIVIALQGGRLIYFEMHPVSDKK-E-SDKKKIVRC--AVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQMESE 160 (290)
Q Consensus 85 n~~qv~ial~~g~i~~~~~~~~~~~~-~-~~~~~Ii~a--s~~~~~l~Val~~~~i~~l~l~~~~~~l~~~~~~~~l~~e 160 (290)
.+.+++.+..+|.|..+.+....... . .....+.+. +.++..++.+..++.|+++.+.. +...... ......
T Consensus 216 ~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~--~~~~~~~--~~~~~~ 291 (425)
T 1r5m_A 216 DDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGN--GNSQNCF--YGHSQS 291 (425)
T ss_dssp ETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSS--BSCSEEE--CCCSSC
T ss_pred CCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCC--CccceEe--cCCCcc
Confidence 36778888888998888765432111 1 112223222 45666788888899999988765 2221111 124567
Q ss_pred eeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEecC-CcceEEEEEEecCCCCCCCCCCCCCccCCce
Q psy14552 161 VLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLP-DLAESLVMIEMGASDPTSSDEPAGPVTLGNL 239 (290)
Q Consensus 161 i~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~-~~p~Sl~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (290)
+.++.+.+. . ++++|..||.+.+|.+.....+.. .... ..+.++... ....
T Consensus 292 i~~~~~~~~------~-~l~~~~~d~~i~i~d~~~~~~~~~---~~~~~~~i~~~~~s------------------~~~~ 343 (425)
T 1r5m_A 292 IVSASWVGD------D-KVISCSMDGSVRLWSLKQNTLLAL---SIVDGVPIFAGRIS------------------QDGQ 343 (425)
T ss_dssp EEEEEEETT------T-EEEEEETTSEEEEEETTTTEEEEE---EECTTCCEEEEEEC------------------TTSS
T ss_pred EEEEEECCC------C-EEEEEeCCCcEEEEECCCCcEeEe---cccCCccEEEEEEc------------------CCCC
Confidence 888888642 2 899999999999999864322222 2221 222333222 1234
Q ss_pred EEEEEecCceEEEEEEe
Q psy14552 240 YLYVGLQNGALLRMVVD 256 (290)
Q Consensus 240 ~L~iGl~dG~l~~~~~d 256 (290)
+|++|..||.+.-|.+.
T Consensus 344 ~l~~~~~dg~i~i~~~~ 360 (425)
T 1r5m_A 344 KYAVAFMDGQVNVYDLK 360 (425)
T ss_dssp EEEEEETTSCEEEEECH
T ss_pred EEEEEECCCeEEEEECC
Confidence 68999999999988774
No 68
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=95.89 E-value=0.57 Score=42.94 Aligned_cols=148 Identities=9% Similarity=0.088 Sum_probs=88.6
Q ss_pred ceEEEEeec--CceEEEEeeCCeEEEEEecCCCce-ecCCC-ceEEEE--EeCCCEEEEEEeCCeEEEEEEcCCCCCcee
Q psy14552 77 KKIVRCAVN--QRQIVIALQGGRLIYFEMHPVSDK-KESDK-KKIVRC--AVNQRQIVIALQGGRLIYFEMHPETGILDE 150 (290)
Q Consensus 77 ~~Iv~as~n--~~qv~ial~~g~i~~~~~~~~~~~-~~~~~-~~Ii~a--s~~~~~l~Val~~~~i~~l~l~~~~~~l~~ 150 (290)
..|.++..+ .++++.+-.+|.|....+...... ....+ ..+.+. +.++..++.|..|++|+++.+.. +..
T Consensus 109 ~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~--~~~-- 184 (410)
T 1vyh_C 109 SPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQG--FEC-- 184 (410)
T ss_dssp SCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTS--SCE--
T ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC--Cce--
Confidence 356666665 467777777888888776532211 11111 223333 44566788888899999998764 221
Q ss_pred eeeee-ecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEecCCcceEEEEEEecCCCCCCCCC
Q psy14552 151 CSETI-QMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDE 229 (290)
Q Consensus 151 ~~~~~-~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~~~~~~~~~~~~~~ 229 (290)
.... .-...|.++++.+. ..+++.|..||++.+|.+.....+.... + -...+..+.+.
T Consensus 185 -~~~~~~h~~~V~~v~~~p~------~~~l~s~s~D~~i~~wd~~~~~~~~~~~----~-h~~~v~~~~~~--------- 243 (410)
T 1vyh_C 185 -IRTMHGHDHNVSSVSIMPN------GDHIVSASRDKTIKMWEVQTGYCVKTFT----G-HREWVRMVRPN--------- 243 (410)
T ss_dssp -EECCCCCSSCEEEEEECSS------SSEEEEEETTSEEEEEETTTCCEEEEEE----C-CSSCEEEEEEC---------
T ss_pred -eEEEcCCCCCEEEEEEeCC------CCEEEEEeCCCeEEEEECCCCcEEEEEe----C-CCccEEEEEEC---------
Confidence 1112 23567899988753 4689999999999999986443332221 1 11122223331
Q ss_pred CCCCccCCceEEEEEecCceEEEEEE
Q psy14552 230 PAGPVTLGNLYLYVGLQNGALLRMVV 255 (290)
Q Consensus 230 ~~~~~~~~~~~L~iGl~dG~l~~~~~ 255 (290)
....+|..|-.||.+.-+.+
T Consensus 244 ------~~g~~l~s~s~D~~v~vwd~ 263 (410)
T 1vyh_C 244 ------QDGTLIASCSNDQTVRVWVV 263 (410)
T ss_dssp ------TTSSEEEEEETTSCEEEEET
T ss_pred ------CCCCEEEEEcCCCeEEEEEC
Confidence 12345888999998877754
No 69
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=95.86 E-value=1 Score=41.13 Aligned_cols=149 Identities=7% Similarity=0.159 Sum_probs=92.7
Q ss_pred CCceEEEEeecCceEEEEeeCCeEEEEEecCCCceec-CCC-ceEEEEEeCCCEEEEEEeCCeEEEEEEcCCCCCceeee
Q psy14552 75 DKKKIVRCAVNQRQIVIALQGGRLIYFEMHPVSDKKE-SDK-KKIVRCAVNQRQIVIALQGGRLIYFEMHPETGILDECS 152 (290)
Q Consensus 75 ~~~~Iv~as~n~~qv~ial~~g~i~~~~~~~~~~~~~-~~~-~~Ii~as~~~~~l~Val~~~~i~~l~l~~~~~~l~~~~ 152 (290)
....|.+.+.++.+++.+..+|.|..+.+........ ..+ ..+.+.+.++..++.|..|+.|+++.+... ..+ ...
T Consensus 172 h~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~-~~~-~~~ 249 (435)
T 1p22_A 172 HTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASP-TDI-TLR 249 (435)
T ss_dssp CSSCEEEEECCSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSS-SCC-EEE
T ss_pred CCCcEEEEEECCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcCCEEEEeeCCCcEEEEeCCCC-CCc-eee
Confidence 3456788888888899999999998887754322111 112 223333666678888888999999988752 111 111
Q ss_pred ee-eecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEecCCcceEEEEEEecCCCCCCCCCCC
Q psy14552 153 ET-IQMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPA 231 (290)
Q Consensus 153 ~~-~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~~~~~~~~~~~~~~~~ 231 (290)
.. ..-...+.++++. ..++++|..||.+.+|.+.....+.... .-...+..+.+
T Consensus 250 ~~~~~~~~~v~~~~~~--------~~~l~s~~~dg~i~vwd~~~~~~~~~~~-----~~~~~v~~~~~------------ 304 (435)
T 1p22_A 250 RVLVGHRAAVNVVDFD--------DKYIVSASGDRTIKVWNTSTCEFVRTLN-----GHKRGIACLQY------------ 304 (435)
T ss_dssp EEECCCSSCEEEEEEE--------TTEEEEEETTSEEEEEETTTCCEEEEEE-----CCSSCEEEEEE------------
T ss_pred eEecCCCCcEEEEEeC--------CCEEEEEeCCCeEEEEECCcCcEEEEEc-----CCCCcEEEEEe------------
Confidence 11 1234567777762 4689999999999999986433332221 11112222222
Q ss_pred CCccCCceEEEEEecCceEEEEEE
Q psy14552 232 GPVTLGNLYLYVGLQNGALLRMVV 255 (290)
Q Consensus 232 ~~~~~~~~~L~iGl~dG~l~~~~~ 255 (290)
.+ .+|+.|-.||.+.-|.+
T Consensus 305 ----~~-~~l~~g~~dg~i~iwd~ 323 (435)
T 1p22_A 305 ----RD-RLVVSGSSDNTIRLWDI 323 (435)
T ss_dssp ----ET-TEEEEEETTSCEEEEET
T ss_pred ----CC-CEEEEEeCCCeEEEEEC
Confidence 12 35999999999887755
No 70
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=95.82 E-value=1 Score=40.60 Aligned_cols=152 Identities=11% Similarity=0.101 Sum_probs=85.6
Q ss_pred CceEEEEeecC---ceEEEEeeCCeEEEEEecCCCc---ee-cCCCceEEEE--EeCCCEEEEEEeCCeEEEEEEcCCCC
Q psy14552 76 KKKIVRCAVNQ---RQIVIALQGGRLIYFEMHPVSD---KK-ESDKKKIVRC--AVNQRQIVIALQGGRLIYFEMHPETG 146 (290)
Q Consensus 76 ~~~Iv~as~n~---~qv~ial~~g~i~~~~~~~~~~---~~-~~~~~~Ii~a--s~~~~~l~Val~~~~i~~l~l~~~~~ 146 (290)
...|.+++.+. ..++.+-.+|.|....+..... +. ......+.+. +.++..++.+..|+.|+++.+.. +
T Consensus 131 ~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~--~ 208 (402)
T 2aq5_A 131 TKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRK--G 208 (402)
T ss_dssp SSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTT--T
T ss_pred CCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCC--C
Confidence 34566666652 4566677788888777653221 11 1112224333 34566788888899999998765 2
Q ss_pred CceeeeeeeecC---cceeEEEeeeCCCCCccccEEEEE---eCCCeEEEEEeCCCCceeEeeEEecC--CcceEEEEEE
Q psy14552 147 ILDECSETIQME---SEVLCMALSNAPSGEQMSRFLAVG---LADNTVRLISLAPQDCLKQKNLQGLP--DLAESLVMIE 218 (290)
Q Consensus 147 ~l~~~~~~~~l~---~ei~~l~i~~~~~~~~~~~~l~VG---l~dg~v~i~~l~~~~~l~~~~~~~L~--~~p~Sl~~~~ 218 (290)
. . ....... ..+.++.+.+. ..++++| ..||.+.+|.+..... ......++ ....++....
T Consensus 209 ~--~-~~~~~~~~~~~~~~~~~~~~~------~~~l~~g~~~~~d~~i~iwd~~~~~~--~~~~~~~~~~~~v~~~~~s~ 277 (402)
T 2aq5_A 209 T--V-VAEKDRPHEGTRPVHAVFVSE------GKILTTGFSRMSERQVALWDTKHLEE--PLSLQELDTSSGVLLPFFDP 277 (402)
T ss_dssp E--E-EEEEECSSCSSSCCEEEECST------TEEEEEEECTTCCEEEEEEETTBCSS--CSEEEECCCCSSCEEEEEET
T ss_pred c--e-eeeeccCCCCCcceEEEEcCC------CcEEEEeccCCCCceEEEEcCccccC--CceEEeccCCCceeEEEEcC
Confidence 2 1 1222111 22667777532 4688888 5799999999864322 11112222 2223332221
Q ss_pred ecCCCCCCCCCCCCCccCCceEEEEEecCceEEEEEEeC
Q psy14552 219 MGASDPTSSDEPAGPVTLGNLYLYVGLQNGALLRMVVDQ 257 (290)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~L~iGl~dG~l~~~~~d~ 257 (290)
.+...+.+|-.||.+.-|.++.
T Consensus 278 -----------------~~~~l~~~g~~dg~i~i~d~~~ 299 (402)
T 2aq5_A 278 -----------------DTNIVYLCGKGDSSIRYFEITS 299 (402)
T ss_dssp -----------------TTTEEEEEETTCSCEEEEEECS
T ss_pred -----------------CCCEEEEEEcCCCeEEEEEecC
Confidence 2344334677899999998854
No 71
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=95.80 E-value=1 Score=40.61 Aligned_cols=159 Identities=11% Similarity=0.160 Sum_probs=85.9
Q ss_pred CCceEEEEeec--CceEEEEeeCCeEEEEEecCCC--------ceec----CCC-------------ceE--EEEEeCC-
Q psy14552 75 DKKKIVRCAVN--QRQIVIALQGGRLIYFEMHPVS--------DKKE----SDK-------------KKI--VRCAVNQ- 124 (290)
Q Consensus 75 ~~~~Iv~as~n--~~qv~ial~~g~i~~~~~~~~~--------~~~~----~~~-------------~~I--i~as~~~- 124 (290)
....|.+++.+ ..+++.+..+|.|..+.+.... ++.. ..+ ..| ++-+.++
T Consensus 27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~ 106 (447)
T 3dw8_B 27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKN 106 (447)
T ss_dssp GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCS
T ss_pred ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCC
Confidence 34556666655 5677777788888888775322 1100 111 113 2223333
Q ss_pred -CEEEEEEeCCeEEEEEEcCCCCCcee------------------------------------eeee--eecCcceeEEE
Q psy14552 125 -RQIVIALQGGRLIYFEMHPETGILDE------------------------------------CSET--IQMESEVLCMA 165 (290)
Q Consensus 125 -~~l~Val~~~~i~~l~l~~~~~~l~~------------------------------------~~~~--~~l~~ei~~l~ 165 (290)
..++.+..|+.|+++.+... .... .... ..-...|.+++
T Consensus 107 ~~~l~s~s~d~~i~iw~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 184 (447)
T 3dw8_B 107 AAQFLLSTNDKTIKLWKISER--DKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSIS 184 (447)
T ss_dssp SSEEEEEECSSCEEEEEEEEE--EEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEE
T ss_pred cceEEEeCCCCeEEEEecccc--cCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEE
Confidence 56888888999999887641 1000 0000 11345677777
Q ss_pred eeeCCCCCccccEEEEEeCCCeEEEEEeCCC-CceeEeeEE--ecCCcceEEEEEEecCCCCCCCCCCCCCccCCceEEE
Q psy14552 166 LSNAPSGEQMSRFLAVGLADNTVRLISLAPQ-DCLKQKNLQ--GLPDLAESLVMIEMGASDPTSSDEPAGPVTLGNLYLY 242 (290)
Q Consensus 166 i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~-~~l~~~~~~--~L~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 242 (290)
+.+. ..+++.| .||.+.+|.+... ..+..+... .+..-...+..+.+.. .+..+|+
T Consensus 185 ~~~~------~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p--------------~~~~~l~ 243 (447)
T 3dw8_B 185 INSD------YETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHP--------------NSCNTFV 243 (447)
T ss_dssp ECTT------SSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECS--------------SCTTEEE
T ss_pred EcCC------CCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECC--------------CCCcEEE
Confidence 7642 4688888 8999999998621 112211000 1111122233333321 2324699
Q ss_pred EEecCceEEEEEEe
Q psy14552 243 VGLQNGALLRMVVD 256 (290)
Q Consensus 243 iGl~dG~l~~~~~d 256 (290)
.|-.||.+.-|.+.
T Consensus 244 s~~~dg~i~iwd~~ 257 (447)
T 3dw8_B 244 YSSSKGTIRLCDMR 257 (447)
T ss_dssp EEETTSCEEEEETT
T ss_pred EEeCCCeEEEEECc
Confidence 99999998877653
No 72
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=95.76 E-value=0.85 Score=39.32 Aligned_cols=110 Identities=14% Similarity=0.152 Sum_probs=66.1
Q ss_pred ceEEEEeec--CceEEEEeeCCeEEEEEecCCCceec-CCCceEEEEE-eCCCEEEEEEeCCeEEEEEEcCCCCCceeee
Q psy14552 77 KKIVRCAVN--QRQIVIALQGGRLIYFEMHPVSDKKE-SDKKKIVRCA-VNQRQIVIALQGGRLIYFEMHPETGILDECS 152 (290)
Q Consensus 77 ~~Iv~as~n--~~qv~ial~~g~i~~~~~~~~~~~~~-~~~~~Ii~as-~~~~~l~Val~~~~i~~l~l~~~~~~l~~~~ 152 (290)
..|.+++.+ ..+++.+..+|.|..+.+........ ..+..+.++. ....+++.+..|+.|+++.++. +.+....
T Consensus 216 ~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~--~~~~~~~ 293 (340)
T 4aow_A 216 GYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEG--KIIVDEL 293 (340)
T ss_dssp SCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSSCEEEEEECSSSSEEEEEETTEEEEEETTT--TEEEEEE
T ss_pred CcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCceEEeeecCCCCceeeccCCCEEEEEECCC--CeEEEec
Confidence 346555554 56777788889988776653322211 1222233332 2234566666899999987764 2111111
Q ss_pred ee-------eecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeC
Q psy14552 153 ET-------IQMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLA 194 (290)
Q Consensus 153 ~~-------~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~ 194 (290)
+. ..-+..|.++++.+. ..+|+.|..||.|++|++.
T Consensus 294 ~~~~~~~~~~~h~~~v~~l~~s~d------g~~l~sgs~Dg~v~iW~~~ 336 (340)
T 4aow_A 294 KQEVISTSSKAEPPQCTSLAWSAD------GQTLFAGYTDNLVRVWQVT 336 (340)
T ss_dssp CCC-------CCCCCEEEEEECTT------SSEEEEEETTSCEEEEEEE
T ss_pred cccceeeeccCCCCCEEEEEECCC------CCEEEEEeCCCEEEEEeCC
Confidence 10 113567888888642 4689999999999999985
No 73
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=95.70 E-value=1.1 Score=40.33 Aligned_cols=104 Identities=13% Similarity=0.137 Sum_probs=63.9
Q ss_pred EeCCCEEEEEE-eCCeEEEEEEcCCCCCceeeeeeeecCcceeEEEeeeCCCCCccccEEEEEeC---------------
Q psy14552 121 AVNQRQIVIAL-QGGRLIYFEMHPETGILDECSETIQMESEVLCMALSNAPSGEQMSRFLAVGLA--------------- 184 (290)
Q Consensus 121 s~~~~~l~Val-~~~~i~~l~l~~~~~~l~~~~~~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~--------------- 184 (290)
+.++..++++. .++.|+++.++. +.+ .........+.++++.+. ..+++++..
T Consensus 311 ~~~g~~l~~~~~~~~~v~v~d~~~--~~~---~~~~~~~~~~~~~~~s~d------g~~l~~~~~~~~~~~~~~~~~g~~ 379 (433)
T 3bws_A 311 GNTENKIYVSDMCCSKIEVYDLKE--KKV---QKSIPVFDKPNTIALSPD------GKYLYVSCRGPNHPTEGYLKKGLV 379 (433)
T ss_dssp CSSTTEEEEEETTTTEEEEEETTT--TEE---EEEEECSSSEEEEEECTT------SSEEEEEECCCCCTTTCTTSCCSS
T ss_pred CCCCCEEEEEecCCCEEEEEECCC--CcE---EEEecCCCCCCeEEEcCC------CCEEEEEecCCCcccccccccccc
Confidence 44566666654 588999988764 322 234455677888888643 357777775
Q ss_pred CCeEEEEEeCCCCceeEeeEEecCCcceEEEEEEecCCCCCCCCCCCCCccCCceEEEEEe-cCceEEEEEEe
Q psy14552 185 DNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAGPVTLGNLYLYVGL-QNGALLRMVVD 256 (290)
Q Consensus 185 dg~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~~~~~L~iGl-~dG~l~~~~~d 256 (290)
||.+.+|.++.. +.+.....+..|.++.... ++ .+|+++- .||.+.-|.++
T Consensus 380 dg~v~~~d~~~~---~~~~~~~~~~~~~~~~~s~-----------------dg-~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 380 LGKVYVIDTTTD---TVKEFWEAGNQPTGLDVSP-----------------DN-RYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp CCEEEEEETTTT---EEEEEEECSSSEEEEEECT-----------------TS-CEEEEEETTTTEEEEEEET
T ss_pred ceEEEEEECCCC---cEEEEecCCCCCceEEEcC-----------------CC-CEEEEEECCCCeEEEEEec
Confidence 479999987532 2232223344566655432 23 3466665 59999988875
No 74
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=95.70 E-value=0.49 Score=43.57 Aligned_cols=155 Identities=12% Similarity=0.079 Sum_probs=88.7
Q ss_pred eEEEEeec--Cc-eEEEEeeCCeEEEEEecCCCc--ee------c-CCCceEEEE--Ee-CCCEEEEEEeCCeEEEEEEc
Q psy14552 78 KIVRCAVN--QR-QIVIALQGGRLIYFEMHPVSD--KK------E-SDKKKIVRC--AV-NQRQIVIALQGGRLIYFEMH 142 (290)
Q Consensus 78 ~Iv~as~n--~~-qv~ial~~g~i~~~~~~~~~~--~~------~-~~~~~Ii~a--s~-~~~~l~Val~~~~i~~l~l~ 142 (290)
.|.+.+.+ ++ +++.+..+|.|..+.+..... +. . .....+.+. +. ++..++.+..++.|+++.+.
T Consensus 183 ~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~ 262 (430)
T 2xyi_A 183 EGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTR 262 (430)
T ss_dssp CCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETT
T ss_pred CeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECC
Confidence 34445544 33 677777789998888764211 10 0 111123222 33 34557777789999999887
Q ss_pred CCCCCceeeeeeeecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCC-CceeEeeEEecCCcceEEEEEEecC
Q psy14552 143 PETGILDECSETIQMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQ-DCLKQKNLQGLPDLAESLVMIEMGA 221 (290)
Q Consensus 143 ~~~~~l~~~~~~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~-~~l~~~~~~~L~~~p~Sl~~~~~~~ 221 (290)
.. ...........-...|.++++.+. +..++++|..||.|.+|.+... ..+.... .-.....++....
T Consensus 263 ~~-~~~~~~~~~~~~~~~v~~i~~~p~-----~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~--~h~~~v~~i~~sp--- 331 (430)
T 2xyi_A 263 NN-NTSKPSHTVDAHTAEVNCLSFNPY-----SEFILATGSADKTVALWDLRNLKLKLHSFE--SHKDEIFQVQWSP--- 331 (430)
T ss_dssp CS-CSSSCSEEEECCSSCEEEEEECSS-----CTTEEEEEETTSEEEEEETTCTTSCSEEEE--CCSSCEEEEEECS---
T ss_pred CC-CCCcceeEeecCCCCeEEEEeCCC-----CCCEEEEEeCCCeEEEEeCCCCCCCeEEee--cCCCCEEEEEECC---
Confidence 52 111111111134567889988753 2457889999999999998642 2222221 1112223332221
Q ss_pred CCCCCCCCCCCCccCCceEEEEEecCceEEEEEEeC
Q psy14552 222 SDPTSSDEPAGPVTLGNLYLYVGLQNGALLRMVVDQ 257 (290)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~L~iGl~dG~l~~~~~d~ 257 (290)
.+...|..|-.||.+.-|.+..
T Consensus 332 --------------~~~~~l~s~~~d~~i~iwd~~~ 353 (430)
T 2xyi_A 332 --------------HNETILASSGTDRRLHVWDLSK 353 (430)
T ss_dssp --------------SCTTEEEEEETTSCCEEEEGGG
T ss_pred --------------CCCCEEEEEeCCCcEEEEeCCC
Confidence 2344588888999999888754
No 75
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=95.66 E-value=1.1 Score=40.02 Aligned_cols=100 Identities=15% Similarity=0.181 Sum_probs=63.7
Q ss_pred cCceEEEE--eeCCeEEEEEecCCCc-----------------eecCCC-ceEEEE--EeCCCEEEEEEeCCe-EEEEEE
Q psy14552 85 NQRQIVIA--LQGGRLIYFEMHPVSD-----------------KKESDK-KKIVRC--AVNQRQIVIALQGGR-LIYFEM 141 (290)
Q Consensus 85 n~~qv~ia--l~~g~i~~~~~~~~~~-----------------~~~~~~-~~Ii~a--s~~~~~l~Val~~~~-i~~l~l 141 (290)
...+++++ ..+|.|..+.+..... .....+ ..|.+. +.++..++.|..|++ |++..+
T Consensus 146 s~~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~ 225 (355)
T 3vu4_A 146 SNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKT 225 (355)
T ss_dssp ETTEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEET
T ss_pred EccEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEEC
Confidence 33666664 5678888777653221 011111 223233 455667888888998 999988
Q ss_pred cCCCCCceeeeeeee---cCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCC
Q psy14552 142 HPETGILDECSETIQ---MESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAP 195 (290)
Q Consensus 142 ~~~~~~l~~~~~~~~---l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~ 195 (290)
.. +.. ...+. -+..|.++++.+. ..+|+.|..||++.+|.+..
T Consensus 226 ~~--~~~---~~~~~~g~h~~~v~~~~~s~~------~~~l~s~s~d~~v~iw~~~~ 271 (355)
T 3vu4_A 226 ED--GVL---VREFRRGLDRADVVDMKWSTD------GSKLAVVSDKWTLHVFEIFN 271 (355)
T ss_dssp TT--CCE---EEEEECTTCCSCEEEEEECTT------SCEEEEEETTCEEEEEESSC
T ss_pred CC--CcE---EEEEEcCCCCCcEEEEEECCC------CCEEEEEECCCEEEEEEccC
Confidence 65 322 12333 4678999998753 47899999999999999864
No 76
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=95.65 E-value=0.97 Score=39.19 Aligned_cols=152 Identities=11% Similarity=0.127 Sum_probs=87.2
Q ss_pred ceEEEEeec--CceEEEEeeCCeEEEEEecCCCceec-CCCceEEEE--EeCCCEEEEEEeC-----CeEEEEEEcCCCC
Q psy14552 77 KKIVRCAVN--QRQIVIALQGGRLIYFEMHPVSDKKE-SDKKKIVRC--AVNQRQIVIALQG-----GRLIYFEMHPETG 146 (290)
Q Consensus 77 ~~Iv~as~n--~~qv~ial~~g~i~~~~~~~~~~~~~-~~~~~Ii~a--s~~~~~l~Val~~-----~~i~~l~l~~~~~ 146 (290)
..|.+++.+ ..+++.+..+|.|..+.+........ .....+.+. +.++..++++..+ +.|+++.+... .
T Consensus 75 ~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~-~ 153 (369)
T 3zwl_B 75 GTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERD-S 153 (369)
T ss_dssp SCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEEC-T
T ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCC-c
Confidence 345555554 56777777888888887653321111 122223222 4556678888777 89999887752 1
Q ss_pred Cceeeee-------ee-ecCc--ceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEecC-CcceEEE
Q psy14552 147 ILDECSE-------TI-QMES--EVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLP-DLAESLV 215 (290)
Q Consensus 147 ~l~~~~~-------~~-~l~~--ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~-~~p~Sl~ 215 (290)
....... .. ..+. .+.++++.+. ..++++|..||.|.+|.+.... ..+...... ....++.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~~~dg~i~i~d~~~~~--~~~~~~~~~~~~v~~~~ 225 (369)
T 3zwl_B 154 ATHELTKVSEEPIHKIITHEGLDAATVAGWSTK------GKYIIAGHKDGKISKYDVSNNY--EYVDSIDLHEKSISDMQ 225 (369)
T ss_dssp TTCCEEEECSSCSEEEECCTTCCCEEEEEECGG------GCEEEEEETTSEEEEEETTTTT--EEEEEEECCSSCEEEEE
T ss_pred cceeecccccceeeeccCCcCccceeEEEEcCC------CCEEEEEcCCCEEEEEECCCCc--EeEEEEecCCCceeEEE
Confidence 1111100 00 1122 7888887642 5689999999999999986421 222212211 2223332
Q ss_pred EEEecCCCCCCCCCCCCCccCCceEEEEEecCceEEEEEE
Q psy14552 216 MIEMGASDPTSSDEPAGPVTLGNLYLYVGLQNGALLRMVV 255 (290)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~L~iGl~dG~l~~~~~ 255 (290)
.. ....+|+.|-.||.+.-|.+
T Consensus 226 ~~------------------~~~~~l~~~~~d~~i~v~d~ 247 (369)
T 3zwl_B 226 FS------------------PDLTYFITSSRDTNSFLVDV 247 (369)
T ss_dssp EC------------------TTSSEEEEEETTSEEEEEET
T ss_pred EC------------------CCCCEEEEecCCceEEEEEC
Confidence 22 12346899999999887754
No 77
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=95.58 E-value=1 Score=39.70 Aligned_cols=107 Identities=12% Similarity=0.138 Sum_probs=62.5
Q ss_pred EeecCceEEEEeeCCeEEEEEecCCC---ceecCCCceEEEE--Ee--CCCEEEEEEeCCeEEEEEEcCCCCCceeeeee
Q psy14552 82 CAVNQRQIVIALQGGRLIYFEMHPVS---DKKESDKKKIVRC--AV--NQRQIVIALQGGRLIYFEMHPETGILDECSET 154 (290)
Q Consensus 82 as~n~~qv~ial~~g~i~~~~~~~~~---~~~~~~~~~Ii~a--s~--~~~~l~Val~~~~i~~l~l~~~~~~l~~~~~~ 154 (290)
+...|..+.+--.++++..+...... .........+.+. +. ++..++.+..|++|+++.+.. +...... .
T Consensus 90 s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~--~~~~~~~-~ 166 (343)
T 3lrv_A 90 SRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYED--DSQYIVH-S 166 (343)
T ss_dssp EECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSS--SCEEEEE-C
T ss_pred EecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCC--CcEEEEE-e
Confidence 33446666666555555444433222 1111111224333 34 556677787899999998875 3321111 1
Q ss_pred eecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCC
Q psy14552 155 IQMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQD 197 (290)
Q Consensus 155 ~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~ 197 (290)
......+.++++.+. ..++++|..||.|.+|.+....
T Consensus 167 ~~~~~~i~~~~~~pd------g~~lasg~~dg~i~iwd~~~~~ 203 (343)
T 3lrv_A 167 AKSDVEYSSGVLHKD------SLLLALYSPDGILDVYNLSSPD 203 (343)
T ss_dssp CCSSCCCCEEEECTT------SCEEEEECTTSCEEEEESSCTT
T ss_pred cCCCCceEEEEECCC------CCEEEEEcCCCEEEEEECCCCC
Confidence 223456889988653 4789999999999999986543
No 78
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=95.52 E-value=1.2 Score=39.38 Aligned_cols=107 Identities=11% Similarity=0.154 Sum_probs=67.2
Q ss_pred eEEEEeec--CceEEEEeeCCeEEEEEecCCCceec-C-CCceEEE--EEeCCCEEEEEEeCCeEEEEEEcCCCCCceee
Q psy14552 78 KIVRCAVN--QRQIVIALQGGRLIYFEMHPVSDKKE-S-DKKKIVR--CAVNQRQIVIALQGGRLIYFEMHPETGILDEC 151 (290)
Q Consensus 78 ~Iv~as~n--~~qv~ial~~g~i~~~~~~~~~~~~~-~-~~~~Ii~--as~~~~~l~Val~~~~i~~l~l~~~~~~l~~~ 151 (290)
.|.+++.+ .++++.+-.+|.|....+........ . ....+.+ .+.++..++.|..|++|+++.+.. +. ..
T Consensus 186 ~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~--~~--~~ 261 (340)
T 1got_B 186 DVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRA--DQ--EL 261 (340)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT--TE--EE
T ss_pred ceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCC--Cc--EE
Confidence 45555554 45666677788888776643221111 1 1122322 245677788888899999998865 21 11
Q ss_pred eeeee---cCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCC
Q psy14552 152 SETIQ---MESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAP 195 (290)
Q Consensus 152 ~~~~~---l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~ 195 (290)
.... ....|.++++.+. ..++++|..||.+.+|.+..
T Consensus 262 -~~~~~~~~~~~v~~~~~s~~------g~~l~~g~~d~~i~vwd~~~ 301 (340)
T 1got_B 262 -MTYSHDNIICGITSVSFSKS------GRLLLAGYDDFNCNVWDALK 301 (340)
T ss_dssp -EEECCTTCCSCEEEEEECTT------SSEEEEEETTSEEEEEETTT
T ss_pred -EEEccCCcccceEEEEECCC------CCEEEEECCCCeEEEEEccc
Confidence 1222 2346888888643 57999999999999999764
No 79
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=95.49 E-value=1.4 Score=39.85 Aligned_cols=153 Identities=10% Similarity=0.085 Sum_probs=94.1
Q ss_pred CCceEEEEeecCceEEEEeeCCeEEEEEecCCCc-eec--CCCceEEEE--EeCCCEEEEEEeCCeEEEEEEcCCCCCce
Q psy14552 75 DKKKIVRCAVNQRQIVIALQGGRLIYFEMHPVSD-KKE--SDKKKIVRC--AVNQRQIVIALQGGRLIYFEMHPETGILD 149 (290)
Q Consensus 75 ~~~~Iv~as~n~~qv~ial~~g~i~~~~~~~~~~-~~~--~~~~~Ii~a--s~~~~~l~Val~~~~i~~l~l~~~~~~l~ 149 (290)
....|.+.+.++.+++.+..+|.|..+.+..... ... .....+.+. +.++..++.|..|+.|+++.+.. +..
T Consensus 175 ~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~--~~~- 251 (401)
T 4aez_A 175 HQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARS--SIP- 251 (401)
T ss_dssp CSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTC--SSE-
T ss_pred CCCceEEEEECCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCC--CCc-
Confidence 4556888888899999999999998887753221 111 112223222 34566788888899999998765 221
Q ss_pred eeeeeeecCcceeEEEeeeCCCCCccccEEEEEe--CCCeEEEEEeCCCCceeEeeEEecCCcceEEEEEEecCCCCCCC
Q psy14552 150 ECSETIQMESEVLCMALSNAPSGEQMSRFLAVGL--ADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSS 227 (290)
Q Consensus 150 ~~~~~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl--~dg~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~~~~~~~~~~~~ 227 (290)
..........|.++++.+. +..++++|. .||.+.+|.+.....+... ..+....++....
T Consensus 252 -~~~~~~~~~~v~~~~~~p~-----~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~---~~~~~v~~~~~s~--------- 313 (401)
T 4aez_A 252 -KFTKTNHNAAVKAVAWCPW-----QSNLLATGGGTMDKQIHFWNAATGARVNTV---DAGSQVTSLIWSP--------- 313 (401)
T ss_dssp -EEEECCCSSCCCEEEECTT-----STTEEEEECCTTTCEEEEEETTTCCEEEEE---ECSSCEEEEEECS---------
T ss_pred -cEEecCCcceEEEEEECCC-----CCCEEEEecCCCCCEEEEEECCCCCEEEEE---eCCCcEEEEEECC---------
Confidence 1111134567888888753 245677765 6999999998743333322 2233333333321
Q ss_pred CCCCCCccCCceEEEE--EecCceEEEEEEeC
Q psy14552 228 DEPAGPVTLGNLYLYV--GLQNGALLRMVVDQ 257 (290)
Q Consensus 228 ~~~~~~~~~~~~~L~i--Gl~dG~l~~~~~d~ 257 (290)
...+|++ |..||.+.-|.+..
T Consensus 314 ---------~~~~l~~~~g~~dg~i~v~~~~~ 336 (401)
T 4aez_A 314 ---------HSKEIMSTHGFPDNNLSIWSYSS 336 (401)
T ss_dssp ---------SSSEEEEEECTTTCEEEEEEEET
T ss_pred ---------CCCeEEEEeecCCCcEEEEecCC
Confidence 2234666 66899998887754
No 80
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=95.48 E-value=0.081 Score=47.56 Aligned_cols=141 Identities=11% Similarity=0.025 Sum_probs=78.1
Q ss_pred eeCCeEEEEEecCCCc---ee-cCCCceEEEE--EeCCCEEEEEEeCCeEEEEEEcCCCCCceeeeeee-ecCcceeEEE
Q psy14552 93 LQGGRLIYFEMHPVSD---KK-ESDKKKIVRC--AVNQRQIVIALQGGRLIYFEMHPETGILDECSETI-QMESEVLCMA 165 (290)
Q Consensus 93 l~~g~i~~~~~~~~~~---~~-~~~~~~Ii~a--s~~~~~l~Val~~~~i~~l~l~~~~~~l~~~~~~~-~l~~ei~~l~ 165 (290)
-.+|.|..+.+..... .. ......+.+. +.++..++.|..|+.|+++.+......... .... .-...|.+++
T Consensus 42 ~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~-~~~~~~h~~~v~~~~ 120 (416)
T 2pm9_A 42 STDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINS-MARFSNHSSSVKTVK 120 (416)
T ss_dssp CCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCE-EEECCCSSSCCCEEE
T ss_pred CCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccc-hhhccCCccceEEEE
Confidence 3456676666643211 11 1122234333 455667888888999999987651000111 1112 2456788999
Q ss_pred eeeCCCCCccccEEEEEeCCCeEEEEEeCCCCc-e---eEeeEEecC---CcceEEEEEEecCCCCCCCCCCCCCccCCc
Q psy14552 166 LSNAPSGEQMSRFLAVGLADNTVRLISLAPQDC-L---KQKNLQGLP---DLAESLVMIEMGASDPTSSDEPAGPVTLGN 238 (290)
Q Consensus 166 i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~-l---~~~~~~~L~---~~p~Sl~~~~~~~~~~~~~~~~~~~~~~~~ 238 (290)
+.+. ...+++.|..||.|.+|.+..... . .......+. ....++.... .+.
T Consensus 121 ~~~~-----~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----------------~~~ 178 (416)
T 2pm9_A 121 FNAK-----QDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQ-----------------SLA 178 (416)
T ss_dssp ECSS-----STTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECS-----------------SCT
T ss_pred EcCC-----CCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCC-----------------CCC
Confidence 8653 246899999999999999864320 0 111100111 1223333321 224
Q ss_pred eEEEEEecCceEEEEEEe
Q psy14552 239 LYLYVGLQNGALLRMVVD 256 (290)
Q Consensus 239 ~~L~iGl~dG~l~~~~~d 256 (290)
.+|+.|-.||.+.-+.+.
T Consensus 179 ~~l~~~~~dg~v~iwd~~ 196 (416)
T 2pm9_A 179 HVFASAGSSNFASIWDLK 196 (416)
T ss_dssp TEEEEESSSSCEEEEETT
T ss_pred cEEEEEcCCCCEEEEECC
Confidence 568899999998877653
No 81
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=95.43 E-value=0.81 Score=47.83 Aligned_cols=142 Identities=16% Similarity=0.208 Sum_probs=85.2
Q ss_pred CceEEEEeeCCeEEEEEecCCCceec-C-CCceEEEE--EeCCCEEEEEEeCCeEEEEEEcCCCCCceeeeeee-ecCcc
Q psy14552 86 QRQIVIALQGGRLIYFEMHPVSDKKE-S-DKKKIVRC--AVNQRQIVIALQGGRLIYFEMHPETGILDECSETI-QMESE 160 (290)
Q Consensus 86 ~~qv~ial~~g~i~~~~~~~~~~~~~-~-~~~~Ii~a--s~~~~~l~Val~~~~i~~l~l~~~~~~l~~~~~~~-~l~~e 160 (290)
..+++.+..+|.|..+.......... . ....+.++ +.++..++.+..|+.|+++.+.. +... ... .-...
T Consensus 627 ~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~--~~~~---~~~~~~~~~ 701 (1249)
T 3sfz_A 627 GQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSAT--GKLV---HTYDEHSEQ 701 (1249)
T ss_dssp SSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT--CCEE---EEEECCSSC
T ss_pred CCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCC--CceE---EEEcCCCCc
Confidence 55666666777777666543221111 1 12224333 45566788888899999998865 3321 122 24668
Q ss_pred eeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEecCCcceEEEEEEecCCCCCCCCCCCCCccCCceE
Q psy14552 161 VLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAGPVTLGNLY 240 (290)
Q Consensus 161 i~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (290)
+.++.+.+.. ...+++.|..||.+.+|.++....+... ..-...+..+.+. ....+
T Consensus 702 v~~~~~~~~~----~~~~l~sg~~d~~v~vwd~~~~~~~~~~-----~~h~~~v~~~~~s---------------p~~~~ 757 (1249)
T 3sfz_A 702 VNCCHFTNKS----NHLLLATGSNDFFLKLWDLNQKECRNTM-----FGHTNSVNHCRFS---------------PDDEL 757 (1249)
T ss_dssp EEEEEECSSS----SCCEEEEEETTSCEEEEETTSSSEEEEE-----CCCSSCEEEEEEC---------------SSTTE
T ss_pred EEEEEEecCC----CceEEEEEeCCCeEEEEECCCcchhhee-----cCCCCCEEEEEEe---------------cCCCE
Confidence 8899987542 3568889999999999998754332222 1111222223331 12236
Q ss_pred EEEEecCceEEEEEEe
Q psy14552 241 LYVGLQNGALLRMVVD 256 (290)
Q Consensus 241 L~iGl~dG~l~~~~~d 256 (290)
|..|-.||.+.-+.+.
T Consensus 758 l~s~s~dg~v~vwd~~ 773 (1249)
T 3sfz_A 758 LASCSADGTLRLWDVR 773 (1249)
T ss_dssp EEEEESSSEEEEEEGG
T ss_pred EEEEECCCeEEEEeCC
Confidence 9999999998888653
No 82
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=95.43 E-value=0.42 Score=49.26 Aligned_cols=158 Identities=11% Similarity=0.237 Sum_probs=92.3
Q ss_pred CceEEEEeeCCeEEEEEecCCCceec--------------CCCceE--EEEEeCCCEEEEEEeCCeEEEEEEcCCCC---
Q psy14552 86 QRQIVIALQGGRLIYFEMHPVSDKKE--------------SDKKKI--VRCAVNQRQIVIALQGGRLIYFEMHPETG--- 146 (290)
Q Consensus 86 ~~qv~ial~~g~i~~~~~~~~~~~~~--------------~~~~~I--i~as~~~~~l~Val~~~~i~~l~l~~~~~--- 146 (290)
.+.++.+-.+|.|-+..+... .+.. .....+ ++.+.++..+|+|..|++|+++.++....
T Consensus 447 g~~laSgs~DgtVrlWd~~~g-~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~ 525 (902)
T 2oaj_A 447 GTAFITGHSNGSVRIYDASHG-DIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSV 525 (902)
T ss_dssp EEEEEEEETTSEEEEEESSCC-TTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---
T ss_pred CcEEEEecCCCcEEEEECCCc-cccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCc
Confidence 456666777888887776532 2211 111224 33366788899999999999998864100
Q ss_pred -------C---------c------------------e---eeeeeee-cCcceeEEEeeeCCCCCccccEEEEEeCCCeE
Q psy14552 147 -------I---------L------------------D---ECSETIQ-MESEVLCMALSNAPSGEQMSRFLAVGLADNTV 188 (290)
Q Consensus 147 -------~---------l------------------~---~~~~~~~-l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v 188 (290)
. + . +.+..+. -...|.++++.+. . +|++|..||+|
T Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpd------G-~lAsgs~D~tv 598 (902)
T 2oaj_A 526 ENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNI------G-FVGIAYAAGSL 598 (902)
T ss_dssp ------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBT------S-EEEEEETTSEE
T ss_pred cccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCC------c-EEEEEeCCCcE
Confidence 0 0 0 0111122 3568888888642 4 99999999999
Q ss_pred EEEEeCCCCceeEeeEEecC----CcceEEEEEEecCCCCCCCCCCCCCccCCceEEEEEecCceEEEEEEeCC-CCc
Q psy14552 189 RLISLAPQDCLKQKNLQGLP----DLAESLVMIEMGASDPTSSDEPAGPVTLGNLYLYVGLQNGALLRMVVDQT-SGD 261 (290)
Q Consensus 189 ~i~~l~~~~~l~~~~~~~L~----~~p~Sl~~~~~~~~~~~~~~~~~~~~~~~~~~L~iGl~dG~l~~~~~d~~-~~~ 261 (290)
++|.++....+.......+. ....++...-+... + + .....+|+.|..||.+.-|.+++. +|.
T Consensus 599 ~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~-~------D---g~~~~~l~sgs~D~tv~~wd~~p~~~g~ 666 (902)
T 2oaj_A 599 MLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYG-D------D---GYSSILMVCGTDMGEVITYKILPASGGK 666 (902)
T ss_dssp EEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECT-T------S---SSEEEEEEEEETTSEEEEEEEEECGGGC
T ss_pred EEEECCCCeEEEEeehhHhccccccceEEEEEEEEecC-C------C---CCcceEEEEEecCCcEEEEEEecCCCCc
Confidence 99998642221110111221 23556655532211 0 0 012467999999999999998543 454
No 83
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=95.25 E-value=1.5 Score=38.78 Aligned_cols=213 Identities=13% Similarity=0.126 Sum_probs=110.3
Q ss_pred CccCCCCeEEEEeeC---CCe--EEEEecC--CeEEEeecCcceeeeccCCCCCceEEEEeecCceEEEEe-eCCeEEEE
Q psy14552 30 GFYGTTPTLCCSAMG---DNS--IVQVYPD--GIRHIGAKNTTWKVSDKKESDKKKIVRCAVNQRQIVIAL-QGGRLIYF 101 (290)
Q Consensus 30 gf~~~~~Ti~~~~~~---~~~--ivQVt~~--~v~l~~~~~~~~~~~~~~~~~~~~Iv~as~n~~qv~ial-~~g~i~~~ 101 (290)
.|.++.+.|+++.-. ++. +..+.+. .++.+... +..+......+..+.+++++- .+|.+..+
T Consensus 56 ~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~----------~~~~~~p~~~~~dg~~l~~~~~~~~~v~~~ 125 (361)
T 3scy_A 56 IPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQ----------KTMGADPCYLTTNGKNIVTANYSGGSITVF 125 (361)
T ss_dssp EECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEE----------ECSSSCEEEEEECSSEEEEEETTTTEEEEE
T ss_pred EECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEe----------ccCCCCcEEEEECCCEEEEEECCCCEEEEE
Confidence 566778888888874 233 2344443 23332111 112223333333555555554 35677777
Q ss_pred EecCCCceecCC------------------CceEEEEEeCCCEEEEEEe-CCeEEEEEEcCCCC----C-ceee----ee
Q psy14552 102 EMHPVSDKKESD------------------KKKIVRCAVNQRQIVIALQ-GGRLIYFEMHPETG----I-LDEC----SE 153 (290)
Q Consensus 102 ~~~~~~~~~~~~------------------~~~Ii~as~~~~~l~Val~-~~~i~~l~l~~~~~----~-l~~~----~~ 153 (290)
.++..+.+.... +..-++.+.++..++++.. ++.+.++.++...+ . +... ..
T Consensus 126 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~ 205 (361)
T 3scy_A 126 PIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAF 205 (361)
T ss_dssp EBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEE
T ss_pred EeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccce
Confidence 765433322110 0011233566777777764 67899999886322 2 3211 01
Q ss_pred eeecCcceeEEEeeeCCCCCccccEEEEEe-CCCeEEEEEeCCCCceeEeeEEe-cC---CcceEEEEEEecCCCCCCCC
Q psy14552 154 TIQMESEVLCMALSNAPSGEQMSRFLAVGL-ADNTVRLISLAPQDCLKQKNLQG-LP---DLAESLVMIEMGASDPTSSD 228 (290)
Q Consensus 154 ~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl-~dg~v~i~~l~~~~~l~~~~~~~-L~---~~p~Sl~~~~~~~~~~~~~~ 228 (290)
.......+..+.+.+. ..+++++. .++.+.+|.++ ...++.+.... .+ ..|..+.+..
T Consensus 206 ~~~~~~~~~~~~~spd------g~~l~v~~~~~~~v~v~~~~-~g~~~~~~~~~~~~~~~~~~~~i~~sp---------- 268 (361)
T 3scy_A 206 KVAPGSGPRHLIFNSD------GKFAYLINEIGGTVIAFRYA-DGMLDEIQTVAADTVNAQGSGDIHLSP---------- 268 (361)
T ss_dssp ECCTTCCEEEEEECTT------SSEEEEEETTTCEEEEEEEE-TTEEEEEEEEESCSSCCCCEEEEEECT----------
T ss_pred ecCCCCCCeEEEEcCC------CCEEEEEcCCCCeEEEEEec-CCceEEeEEEecCCCCCCCcccEEECC----------
Confidence 1222345666677542 35777777 58999999986 33344332222 11 1244444331
Q ss_pred CCCCCccCCceEEEEEecC--ceEEEEEEeCCCCcccccceEEecCcceEE
Q psy14552 229 EPAGPVTLGNLYLYVGLQN--GALLRMVVDQTSGDLSDNRMRYLGSRPVKL 277 (290)
Q Consensus 229 ~~~~~~~~~~~~L~iGl~d--G~l~~~~~d~~~~~l~~~~~~~lG~~pv~l 277 (290)
+++ +|+++-++ +.+.-|.++..++.+........|..|-.+
T Consensus 269 -------dg~-~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~ 311 (361)
T 3scy_A 269 -------DGK-YLYASNRLKADGVAIFKVDETNGTLTKVGYQLTGIHPRNF 311 (361)
T ss_dssp -------TSS-EEEEEECSSSCEEEEEEECTTTCCEEEEEEEECSSCCCEE
T ss_pred -------CCC-EEEEECCCCCCEEEEEEEcCCCCcEEEeeEecCCCCCceE
Confidence 233 57777765 888889998777765433333335555443
No 84
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=95.25 E-value=1.7 Score=39.40 Aligned_cols=104 Identities=8% Similarity=0.141 Sum_probs=65.9
Q ss_pred CceEEEEeeCCeEEEEEecCCCc---eecC-CCceEEEE--EeCCCEEEEEEeCCeEEEEEEcCCCCCceeeeeeeec--
Q psy14552 86 QRQIVIALQGGRLIYFEMHPVSD---KKES-DKKKIVRC--AVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQM-- 157 (290)
Q Consensus 86 ~~qv~ial~~g~i~~~~~~~~~~---~~~~-~~~~Ii~a--s~~~~~l~Val~~~~i~~l~l~~~~~~l~~~~~~~~l-- 157 (290)
..+++.+..+|.|..+.+..... +..+ ....+.+. +.++..++.|..|+.|+++.+.. +. ......+
T Consensus 182 ~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~--~~---~~~~~~~~~ 256 (437)
T 3gre_A 182 KSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRF--NV---LIRSWSFGD 256 (437)
T ss_dssp CEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTT--TE---EEEEEBCTT
T ss_pred CCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCC--cc---EEEEEecCC
Confidence 66777778888888887654322 2211 12234333 34566788888899999998875 22 2223332
Q ss_pred CcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCC
Q psy14552 158 ESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQ 196 (290)
Q Consensus 158 ~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~ 196 (290)
...|.++.+.+.-. ....++++|..||.|.+|.+...
T Consensus 257 ~~~v~~~~~~~~~s--~~~~~l~s~~~dg~i~iwd~~~~ 293 (437)
T 3gre_A 257 HAPITHVEVCQFYG--KNSVIVVGGSSKTFLTIWNFVKG 293 (437)
T ss_dssp CEEEEEEEECTTTC--TTEEEEEEESTTEEEEEEETTTT
T ss_pred CCceEEEEeccccC--CCccEEEEEcCCCcEEEEEcCCC
Confidence 34577776654311 13568999999999999998643
No 85
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=95.25 E-value=1.3 Score=40.71 Aligned_cols=148 Identities=8% Similarity=0.045 Sum_probs=83.2
Q ss_pred ceEEEEeeCCeEEEEEecCC-------Cceec-----CCCceEEEE--EeCCC-EEEEEEeCCeEEEEEEcCCCCCceee
Q psy14552 87 RQIVIALQGGRLIYFEMHPV-------SDKKE-----SDKKKIVRC--AVNQR-QIVIALQGGRLIYFEMHPETGILDEC 151 (290)
Q Consensus 87 ~qv~ial~~g~i~~~~~~~~-------~~~~~-----~~~~~Ii~a--s~~~~-~l~Val~~~~i~~l~l~~~~~~l~~~ 151 (290)
..++.+..+|.|..+.+... ..+.+ .....+.+. +.++. .++.|..|+.|+++.+... ......
T Consensus 142 ~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~-~~~~~~ 220 (430)
T 2xyi_A 142 CVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINAT-PKEHRV 220 (430)
T ss_dssp EEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSC-CBGGGE
T ss_pred cEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCC-CCCCce
Confidence 35555566788888887641 11111 111122112 33344 6777777999999988751 111111
Q ss_pred ---eeee-ecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEE-ecCCcceEEEEEEecCCCCCC
Q psy14552 152 ---SETI-QMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQ-GLPDLAESLVMIEMGASDPTS 226 (290)
Q Consensus 152 ---~~~~-~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~-~L~~~p~Sl~~~~~~~~~~~~ 226 (290)
.... .-...|.++++.+. ...++++|..||.|.+|.+........+... .-...+.++....
T Consensus 221 ~~~~~~~~~h~~~v~~v~~~p~-----~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p-------- 287 (430)
T 2xyi_A 221 IDAKNIFTGHTAVVEDVAWHLL-----HESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNP-------- 287 (430)
T ss_dssp EECSEEECCCSSCEEEEEECSS-----CTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECS--------
T ss_pred eccceeecCCCCCEeeeEEeCC-----CCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCC--------
Confidence 1111 23456888888653 2568889999999999998643211111111 1222344444332
Q ss_pred CCCCCCCccCCceEEEEEecCceEEEEEEeC
Q psy14552 227 SDEPAGPVTLGNLYLYVGLQNGALLRMVVDQ 257 (290)
Q Consensus 227 ~~~~~~~~~~~~~~L~iGl~dG~l~~~~~d~ 257 (290)
.+...|..|-.||.+.-|.+..
T Consensus 288 ---------~~~~~l~tg~~dg~v~vwd~~~ 309 (430)
T 2xyi_A 288 ---------YSEFILATGSADKTVALWDLRN 309 (430)
T ss_dssp ---------SCTTEEEEEETTSEEEEEETTC
T ss_pred ---------CCCCEEEEEeCCCeEEEEeCCC
Confidence 2344588999999998887643
No 86
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=95.24 E-value=1.7 Score=39.34 Aligned_cols=110 Identities=13% Similarity=0.140 Sum_probs=64.5
Q ss_pred eEEEEeec--CceEEEEeeCCeEEEEEecCCCc---eecCCCceEEEEEe-CCCEEEEEEeCCeEEEEEEcCCCCCceee
Q psy14552 78 KIVRCAVN--QRQIVIALQGGRLIYFEMHPVSD---KKESDKKKIVRCAV-NQRQIVIALQGGRLIYFEMHPETGILDEC 151 (290)
Q Consensus 78 ~Iv~as~n--~~qv~ial~~g~i~~~~~~~~~~---~~~~~~~~Ii~as~-~~~~l~Val~~~~i~~l~l~~~~~~l~~~ 151 (290)
.|.+++.+ ..+++.+-.+|.|....+..... +.......-++.+. ++..++.|..|+.|+++.+.. +.+...
T Consensus 167 ~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~--~~~~~~ 244 (393)
T 1erj_A 167 DIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSET--GFLVER 244 (393)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTT--CCEEEE
T ss_pred CEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCC--CcEEEe
Confidence 45555543 56677777778887776543211 11112211122233 456688888899999998764 322221
Q ss_pred eee-----eecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCC
Q psy14552 152 SET-----IQMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAP 195 (290)
Q Consensus 152 ~~~-----~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~ 195 (290)
+.. ..-...|.++++.+. ..+|+.|..||.|.+|.+..
T Consensus 245 ~~~~~~~~~~h~~~v~~v~~~~~------g~~l~s~s~d~~v~~wd~~~ 287 (393)
T 1erj_A 245 LDSENESGTGHKDSVYSVVFTRD------GQSVVSGSLDRSVKLWNLQN 287 (393)
T ss_dssp EC------CCCSSCEEEEEECTT------SSEEEEEETTSEEEEEEC--
T ss_pred ecccccCCCCCCCCEEEEEECCC------CCEEEEEeCCCEEEEEECCC
Confidence 110 012456888888642 46899999999999999864
No 87
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=95.18 E-value=0.56 Score=41.50 Aligned_cols=109 Identities=8% Similarity=0.070 Sum_probs=68.3
Q ss_pred CCCEEEEEEeCCeEEEEEEcCCCCCceeeeeee-----------ecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEE
Q psy14552 123 NQRQIVIALQGGRLIYFEMHPETGILDECSETI-----------QMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLI 191 (290)
Q Consensus 123 ~~~~l~Val~~~~i~~l~l~~~~~~l~~~~~~~-----------~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~ 191 (290)
++..++.|..|+.|+++.++.. ......... .....|.++++.+. ...+++.|..||.+.+|
T Consensus 55 ~~~~l~~~~~dg~i~iw~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~~l~s~~~d~~i~iw 127 (408)
T 4a11_B 55 EGRYMLSGGSDGVIVLYDLENS--SRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPH-----DTGMFTSSSFDKTLKVW 127 (408)
T ss_dssp TCCEEEEEETTSCEEEEECCCC--SSSSCEEECEEEEECTTCTTCCSSCEEEEEECTT-----CTTCEEEEETTSEEEEE
T ss_pred CCCEEEEEcCCCeEEEEECCCC--cccceEeccccccccccccccCCCcEEEEEEccC-----CCcEEEEEeCCCeEEEe
Confidence 5667888888999999988752 111111100 14567888888653 24688899999999999
Q ss_pred EeCCCCceeEeeEEecCCcceEEEEEEecCCCCCCCCCCCCCccCCceEEEEEecCceEEEEEEe
Q psy14552 192 SLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAGPVTLGNLYLYVGLQNGALLRMVVD 256 (290)
Q Consensus 192 ~l~~~~~l~~~~~~~L~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~~~~~L~iGl~dG~l~~~~~d 256 (290)
.++... ............++..... .....++++|..||.+.-|.+.
T Consensus 128 d~~~~~---~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~v~~~d~~ 174 (408)
T 4a11_B 128 DTNTLQ---TADVFNFEETVYSHHMSPV---------------STKHCLVAVGTRGPKVQLCDLK 174 (408)
T ss_dssp ETTTTE---EEEEEECSSCEEEEEECSS---------------CSSCCEEEEEESSSSEEEEESS
T ss_pred eCCCCc---cceeccCCCceeeeEeecC---------------CCCCcEEEEEcCCCeEEEEeCC
Confidence 987432 2222233333333333321 1234469999999999888664
No 88
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=95.12 E-value=0.21 Score=46.10 Aligned_cols=108 Identities=9% Similarity=0.151 Sum_probs=64.6
Q ss_pred CCEEEEEEeCCeEEEEEEcCCCCCceeeeeeeecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEee
Q psy14552 124 QRQIVIALQGGRLIYFEMHPETGILDECSETIQMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKN 203 (290)
Q Consensus 124 ~~~l~Val~~~~i~~l~l~~~~~~l~~~~~~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~ 203 (290)
...++.|..|+.|++..++. +..........-...|.++++.+.+ ..+|+.|..||+|.+|.+... .+....
T Consensus 132 ~~~lasGs~dg~i~lWd~~~--~~~~~~~~~~gH~~~V~~l~f~p~~-----~~~l~s~s~D~~v~iwd~~~~-~~~~~~ 203 (435)
T 4e54_B 132 PSTVAVGSKGGDIMLWNFGI--KDKPTFIKGIGAGGSITGLKFNPLN-----TNQFYASSMEGTTRLQDFKGN-ILRVFA 203 (435)
T ss_dssp TTCEEEEETTSCEEEECSSC--CSCCEEECCCSSSCCCCEEEECSSC-----TTEEEEECSSSCEEEEETTSC-EEEEEE
T ss_pred CCEEEEEeCCCEEEEEECCC--CCceeEEEccCCCCCEEEEEEeCCC-----CCEEEEEeCCCEEEEeeccCC-ceeEEe
Confidence 44588888899999997764 2211211111124679999997542 468999999999999998632 222221
Q ss_pred EEecCCcceEEEEEEecCCCCCCCCCCCCCccCCceEEEEEecCceEEEEEEe
Q psy14552 204 LQGLPDLAESLVMIEMGASDPTSSDEPAGPVTLGNLYLYVGLQNGALLRMVVD 256 (290)
Q Consensus 204 ~~~L~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~~~~~L~iGl~dG~l~~~~~d 256 (290)
........+..+.+. ....+|..|-.||.+.-+.++
T Consensus 204 --~~~~~~~~~~~~~~~---------------~~~~~l~~g~~dg~i~~wd~~ 239 (435)
T 4e54_B 204 --SSDTINIWFCSLDVS---------------ASSRMVVTGDNVGNVILLNMD 239 (435)
T ss_dssp --CCSSCSCCCCCEEEE---------------TTTTEEEEECSSSBEEEEESS
T ss_pred --ccCCCCccEEEEEEC---------------CCCCEEEEEeCCCcEeeeccC
Confidence 111111111112221 123468999999999888653
No 89
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=95.12 E-value=1.3 Score=37.58 Aligned_cols=114 Identities=14% Similarity=0.120 Sum_probs=68.9
Q ss_pred EEEEee--cCceEEEEeeCCeEEEEEecCCC-ceec-----CCCceEEEEE--e--CCCEEEEEEeCCeEEEEEEcCCCC
Q psy14552 79 IVRCAV--NQRQIVIALQGGRLIYFEMHPVS-DKKE-----SDKKKIVRCA--V--NQRQIVIALQGGRLIYFEMHPETG 146 (290)
Q Consensus 79 Iv~as~--n~~qv~ial~~g~i~~~~~~~~~-~~~~-----~~~~~Ii~as--~--~~~~l~Val~~~~i~~l~l~~~~~ 146 (290)
|.+++. +.++++.+..+|.|..+.+.... .+.. .....|.+.+ . ++..++.+..|+.|+++.+.....
T Consensus 14 v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~ 93 (351)
T 3f3f_A 14 VHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQE 93 (351)
T ss_dssp EEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSC
T ss_pred eeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcc
Confidence 444444 35677777778888888776432 2221 1222243333 2 356788888899999999875210
Q ss_pred Cc--e--eeeeee-ecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCC
Q psy14552 147 IL--D--ECSETI-QMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQ 196 (290)
Q Consensus 147 ~l--~--~~~~~~-~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~ 196 (290)
.. . ...... .-...|.++++.+.. ...++++|..||.+.+|.+...
T Consensus 94 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~~~l~~~~~dg~v~iwd~~~~ 144 (351)
T 3f3f_A 94 ECSGRRWNKLCTLNDSKGSLYSVKFAPAH----LGLKLACLGNDGILRLYDALEP 144 (351)
T ss_dssp TTSSCSEEEEEEECCCSSCEEEEEECCGG----GCSEEEEEETTCEEEEEECSST
T ss_pred cccccCcceeeeecccCCceeEEEEcCCC----CCcEEEEecCCCcEEEecCCCh
Confidence 00 0 111112 245678888886431 1578999999999999998643
No 90
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=95.11 E-value=1.6 Score=38.48 Aligned_cols=98 Identities=16% Similarity=0.198 Sum_probs=58.2
Q ss_pred ceEEEEeeCCeEEEEEecCCC--ceecCCCceEEEE--EeCCCEEEEEEeCCeEEEEEEcCCCCCceeeeeeeecCccee
Q psy14552 87 RQIVIALQGGRLIYFEMHPVS--DKKESDKKKIVRC--AVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQMESEVL 162 (290)
Q Consensus 87 ~qv~ial~~g~i~~~~~~~~~--~~~~~~~~~Ii~a--s~~~~~l~Val~~~~i~~l~l~~~~~~l~~~~~~~~l~~ei~ 162 (290)
++++.+-.+|.|..+...... .+.. ....+.+. +.++..++.|..|+.|+++.+... ... .........|.
T Consensus 185 ~~l~s~~~d~~i~iwd~~~~~~~~~~~-h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~-~~~---~~~~~~~~~v~ 259 (343)
T 2xzm_R 185 PYFASVGWDGRLKVWNTNFQIRYTFKA-HESNVNHLSISPNGKYIATGGKDKKLLIWDILNL-TYP---QREFDAGSTIN 259 (343)
T ss_dssp CEEEEEETTSEEEEEETTTEEEEEEEC-CSSCEEEEEECTTSSEEEEEETTCEEEEEESSCC-SSC---SEEEECSSCEE
T ss_pred CEEEEEcCCCEEEEEcCCCceeEEEcC-ccccceEEEECCCCCEEEEEcCCCeEEEEECCCC-ccc---ceeecCCCcEE
Confidence 467777778887766522100 1111 11224333 456777888888999999988431 211 12233456788
Q ss_pred EEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCC
Q psy14552 163 CMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQ 196 (290)
Q Consensus 163 ~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~ 196 (290)
++++.+. ..++++|. |+.+.+|.+...
T Consensus 260 ~v~~sp~------~~~la~~~-d~~v~iw~~~~~ 286 (343)
T 2xzm_R 260 QIAFNPK------LQWVAVGT-DQGVKIFNLMTQ 286 (343)
T ss_dssp EEEECSS------SCEEEEEE-SSCEEEEESSSC
T ss_pred EEEECCC------CCEEEEEC-CCCEEEEEeCCC
Confidence 8888643 35676664 777999998643
No 91
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=95.07 E-value=2 Score=39.23 Aligned_cols=149 Identities=12% Similarity=0.174 Sum_probs=91.3
Q ss_pred CCceEEEEeecCceEEEEeeCCeEEEEEecCCCceec-CCC-ceEEEEEeCCCEEEEEEeCCeEEEEEEcCCCCCceeee
Q psy14552 75 DKKKIVRCAVNQRQIVIALQGGRLIYFEMHPVSDKKE-SDK-KKIVRCAVNQRQIVIALQGGRLIYFEMHPETGILDECS 152 (290)
Q Consensus 75 ~~~~Iv~as~n~~qv~ial~~g~i~~~~~~~~~~~~~-~~~-~~Ii~as~~~~~l~Val~~~~i~~l~l~~~~~~l~~~~ 152 (290)
....|.+.+.++.+++.+..+|.|..+.+........ ..+ ..+.+.+.++..++.+..|+.|+++.+.. +.. .
T Consensus 238 ~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~--~~~---~ 312 (445)
T 2ovr_B 238 HVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVET--GNC---I 312 (445)
T ss_dssp CSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTT--CCE---E
T ss_pred CcccEEEEEECCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEECCCEEEEEeCCCeEEEEECCC--CCE---E
Confidence 3456777778888999999999998887653321111 111 22444456777888888899999998865 321 1
Q ss_pred eeee-cCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEecCCcceEEEEEEecCCCCCCCCCCC
Q psy14552 153 ETIQ-MESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPA 231 (290)
Q Consensus 153 ~~~~-l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~~~~~~~~~~~~~~~~ 231 (290)
.... -...+.++++. ..++++|..||.+.+|.+.....+.... ....-...+.-+.+
T Consensus 313 ~~~~~~~~~v~~~~~~--------~~~l~~~~~dg~i~vwd~~~~~~~~~~~--~~~~~~~~v~~~~~------------ 370 (445)
T 2ovr_B 313 HTLTGHQSLTSGMELK--------DNILVSGNADSTVKIWDIKTGQCLQTLQ--GPNKHQSAVTCLQF------------ 370 (445)
T ss_dssp EEECCCCSCEEEEEEE--------TTEEEEEETTSCEEEEETTTCCEEEEEC--STTSCSSCEEEEEE------------
T ss_pred EEEcCCcccEEEEEEe--------CCEEEEEeCCCeEEEEECCCCcEEEEEc--cCCCCCCCEEEEEE------------
Confidence 1222 23455566552 4589999999999999986433322221 10011122222332
Q ss_pred CCccCCceEEEEEecCceEEEEEE
Q psy14552 232 GPVTLGNLYLYVGLQNGALLRMVV 255 (290)
Q Consensus 232 ~~~~~~~~~L~iGl~dG~l~~~~~ 255 (290)
.+ .+|+.|-.||.+.-|.+
T Consensus 371 ----~~-~~l~s~~~dg~v~iwd~ 389 (445)
T 2ovr_B 371 ----NK-NFVITSSDDGTVKLWDL 389 (445)
T ss_dssp ----CS-SEEEEEETTSEEEEEET
T ss_pred ----CC-CEEEEEeCCCeEEEEEC
Confidence 12 36999999999887754
No 92
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=95.02 E-value=0.98 Score=46.51 Aligned_cols=98 Identities=12% Similarity=0.188 Sum_probs=63.1
Q ss_pred CceEEEEeeCCeEEEEEecCCCc-eecCCCceEEEE--EeCCCEEEEEEeCCeEEEEEEcCCCCCceeeeeeeecCccee
Q psy14552 86 QRQIVIALQGGRLIYFEMHPVSD-KKESDKKKIVRC--AVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQMESEVL 162 (290)
Q Consensus 86 ~~qv~ial~~g~i~~~~~~~~~~-~~~~~~~~Ii~a--s~~~~~l~Val~~~~i~~l~l~~~~~~l~~~~~~~~l~~ei~ 162 (290)
..+++.+..+|.|..+....... ...+....|.+. +. +..++.+..|++|++..+.. +.. +.....+..|.
T Consensus 29 g~~lAsgs~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~--~~~---~~~~~~~~~V~ 102 (902)
T 2oaj_A 29 QNLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYS--QKV---LTTVFVPGKIT 102 (902)
T ss_dssp TTEEEEEETTSEEEEECSTTCEEEEECSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTT--CSE---EEEEECSSCEE
T ss_pred CCEEEEEeCCCEEEEEeCCCcEEEEEcCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCC--CcE---EEEEcCCCCEE
Confidence 45677777778877664432111 111222234232 34 44677777899999998875 322 23344567899
Q ss_pred EEEeeeCCCCCccccEEEEEeCCCeEEEEEeCC
Q psy14552 163 CMALSNAPSGEQMSRFLAVGLADNTVRLISLAP 195 (290)
Q Consensus 163 ~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~ 195 (290)
++++.+. ..++++|..||.|.+|.++.
T Consensus 103 ~v~~sp~------g~~l~sgs~dg~V~lwd~~~ 129 (902)
T 2oaj_A 103 SIDTDAS------LDWMLIGLQNGSMIVYDIDR 129 (902)
T ss_dssp EEECCTT------CSEEEEEETTSCEEEEETTT
T ss_pred EEEECCC------CCEEEEEcCCCcEEEEECCC
Confidence 9998643 57999999999999999864
No 93
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=94.92 E-value=1.8 Score=38.05 Aligned_cols=157 Identities=11% Similarity=0.078 Sum_probs=85.4
Q ss_pred ceEEEEeec--CceEEEEeeCCeEEEEEecCC----Cceec----CCC-ceEEEE--EeCCCEEEEEEeCCeEEEEEEcC
Q psy14552 77 KKIVRCAVN--QRQIVIALQGGRLIYFEMHPV----SDKKE----SDK-KKIVRC--AVNQRQIVIALQGGRLIYFEMHP 143 (290)
Q Consensus 77 ~~Iv~as~n--~~qv~ial~~g~i~~~~~~~~----~~~~~----~~~-~~Ii~a--s~~~~~l~Val~~~~i~~l~l~~ 143 (290)
..|.+++.+ ..+++.+..+|.|....+... ..+.. ..+ ..+.++ +.++..++.|..|++|++..++.
T Consensus 59 ~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~ 138 (330)
T 2hes_X 59 KAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDE 138 (330)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCT
T ss_pred CCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccC
Confidence 345555554 456666667788877665321 01111 111 123222 44566788888899999999854
Q ss_pred CCCCceeeeeee-ecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEecCCcceEEEEEEecCC
Q psy14552 144 ETGILDECSETI-QMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGAS 222 (290)
Q Consensus 144 ~~~~l~~~~~~~-~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~~~~~~~ 222 (290)
. +.-.+..... .-...|.++.+.+. ..+|+.|.+||++.+|.+... ..+.+ ..+..-...+.-+.+...
T Consensus 139 ~-~~~~~~~~~~~~h~~~v~~v~~~p~------~~~l~s~s~D~~i~iW~~~~~-~~~~~--~~~~~h~~~v~~~~~~~~ 208 (330)
T 2hes_X 139 S-GEEYECISVLQEHSQDVKHVIWHPS------EALLASSSYDDTVRIWKDYDD-DWECV--AVLNGHEGTVWSSDFDKT 208 (330)
T ss_dssp T-CCCCEEEEEECCCSSCEEEEEECSS------SSEEEEEETTSCEEEEEEETT-EEEEE--EEECCCSSCEEEEEECCS
T ss_pred C-CCCeEEEEEeccCCCceEEEEECCC------CCEEEEEcCCCeEEEEECCCC-CeeEE--EEccCCCCcEEEEEecCC
Confidence 1 2111221222 23467888888653 468999999999999987532 11111 122211112222333211
Q ss_pred CCCCCCCCCCCccCCceEEEEEecCceEEEEEEe
Q psy14552 223 DPTSSDEPAGPVTLGNLYLYVGLQNGALLRMVVD 256 (290)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~L~iGl~dG~l~~~~~d 256 (290)
....+|..|-.||.+.-+.+.
T Consensus 209 -------------~~~~~l~s~s~D~~v~iw~~~ 229 (330)
T 2hes_X 209 -------------EGVFRLCSGSDDSTVRVWKYM 229 (330)
T ss_dssp -------------SSSCEEEEEETTSCEEEEEEE
T ss_pred -------------CCeeEEEEEeCCCeEEEEEec
Confidence 223458888889988877763
No 94
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=94.91 E-value=1.4 Score=42.67 Aligned_cols=111 Identities=14% Similarity=0.174 Sum_probs=70.5
Q ss_pred EeCCCEEEEEEeCCeEEEEEEcCCCCCceeeeeeeecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCcee
Q psy14552 121 AVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLK 200 (290)
Q Consensus 121 s~~~~~l~Val~~~~i~~l~l~~~~~~l~~~~~~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~ 200 (290)
+.++..++.|..|++|+++.+.. +.+.+. ....-+..|.++++.+. ..+|+.|..|+.+.+|.+.....
T Consensus 457 spdg~~lasgs~D~~v~lwd~~~--~~~~~~-~~~~h~~~v~~v~fspd------g~~las~s~d~~v~~w~~~~~~~-- 525 (611)
T 1nr0_A 457 SNDKQFVAVGGQDSKVHVYKLSG--ASVSEV-KTIVHPAEITSVAFSNN------GAFLVATDQSRKVIPYSVANNFE-- 525 (611)
T ss_dssp CTTSCEEEEEETTSEEEEEEEET--TEEEEE-EEEECSSCEEEEEECTT------SSEEEEEETTSCEEEEEGGGTTE--
T ss_pred eCCCCEEEEeCCCCeEEEEEccC--Cceeee-eccCCCCceEEEEECCC------CCEEEEEcCCCCEEEEEcCCCCc--
Confidence 55677799998999999998875 333222 22345678999999753 47899999999999999863211
Q ss_pred EeeEEecCCcceEEEEEEecCCCCCCCCCCCCCccCCceEEEEEecCceEEEEEEeC
Q psy14552 201 QKNLQGLPDLAESLVMIEMGASDPTSSDEPAGPVTLGNLYLYVGLQNGALLRMVVDQ 257 (290)
Q Consensus 201 ~~~~~~L~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~~~~~L~iGl~dG~l~~~~~d~ 257 (290)
.......+.-...+.-+.+. ....+|..|-.||.+.-+.++.
T Consensus 526 ~~~~~~~~~H~~~V~~v~fs---------------pdg~~lasgs~D~~v~lW~~~~ 567 (611)
T 1nr0_A 526 LAHTNSWTFHTAKVACVSWS---------------PDNVRLATGSLDNSVIVWNMNK 567 (611)
T ss_dssp ESCCCCCCCCSSCEEEEEEC---------------TTSSEEEEEETTSCEEEEETTC
T ss_pred eeeeeeeeecccceeEEEEC---------------CCCCEEEEEECCCcEEEEECCC
Confidence 11110111111223333332 1234688999999998887643
No 95
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=94.88 E-value=1.5 Score=37.03 Aligned_cols=140 Identities=6% Similarity=0.017 Sum_probs=81.6
Q ss_pred ecCceEEEEeeCCeEEEEEecCCCcee--cCCCceEEE--EEeCCCEEEEEEeCCeEEEEEEcCCCCCceeeeeee-ecC
Q psy14552 84 VNQRQIVIALQGGRLIYFEMHPVSDKK--ESDKKKIVR--CAVNQRQIVIALQGGRLIYFEMHPETGILDECSETI-QME 158 (290)
Q Consensus 84 ~n~~qv~ial~~g~i~~~~~~~~~~~~--~~~~~~Ii~--as~~~~~l~Val~~~~i~~l~l~~~~~~l~~~~~~~-~l~ 158 (290)
.++.+++.+..+|.|..+.+....... ......+.+ .+.++..++.+..|+.++++.+... ...... ... .-.
T Consensus 27 ~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~-~~~~~~-~~~~~~~ 104 (313)
T 3odt_A 27 VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFAT-SGEDPL-YTLIGHQ 104 (313)
T ss_dssp EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCC-TTSCC--CEECCCS
T ss_pred cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeec-CCCCcc-cchhhcc
Confidence 346677778788888887764321111 111222322 2566777888888999999887652 111111 112 235
Q ss_pred cceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEecCCcceEEEEEEecCCCCCCCCCCCCCccCCc
Q psy14552 159 SEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAGPVTLGN 238 (290)
Q Consensus 159 ~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~~~ 238 (290)
..|.++++. ..++++|..||.+.+|.. ....... ..-.....++.... ...
T Consensus 105 ~~i~~~~~~--------~~~l~~~~~d~~i~~~d~--~~~~~~~--~~~~~~v~~~~~~~-----------------~~~ 155 (313)
T 3odt_A 105 GNVCSLSFQ--------DGVVISGSWDKTAKVWKE--GSLVYNL--QAHNASVWDAKVVS-----------------FSE 155 (313)
T ss_dssp SCEEEEEEE--------TTEEEEEETTSEEEEEET--TEEEEEE--ECCSSCEEEEEEEE-----------------TTT
T ss_pred cCEEEEEec--------CCEEEEEeCCCCEEEEcC--CcEEEec--ccCCCceeEEEEcc-----------------CCC
Confidence 677788772 458999999999999982 1111111 11122233444443 123
Q ss_pred eEEEEEecCceEEEEE
Q psy14552 239 LYLYVGLQNGALLRMV 254 (290)
Q Consensus 239 ~~L~iGl~dG~l~~~~ 254 (290)
.+|+.|..||.+.-|.
T Consensus 156 ~~l~~~~~d~~i~i~d 171 (313)
T 3odt_A 156 NKFLTASADKTIKLWQ 171 (313)
T ss_dssp TEEEEEETTSCEEEEE
T ss_pred CEEEEEECCCCEEEEe
Confidence 3588999999988775
No 96
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=94.87 E-value=1.9 Score=38.02 Aligned_cols=155 Identities=12% Similarity=0.119 Sum_probs=84.4
Q ss_pred eEEEEeec--CceEEEEeeCCeEEEEEecCCCceec--CCCceEEEE--EeCCCEEEEEEeCCeEEEEEEcCCCCCceee
Q psy14552 78 KIVRCAVN--QRQIVIALQGGRLIYFEMHPVSDKKE--SDKKKIVRC--AVNQRQIVIALQGGRLIYFEMHPETGILDEC 151 (290)
Q Consensus 78 ~Iv~as~n--~~qv~ial~~g~i~~~~~~~~~~~~~--~~~~~Ii~a--s~~~~~l~Val~~~~i~~l~l~~~~~~l~~~ 151 (290)
.|..++.+ ..+++-+-.+|.|....+........ .....+.++ +.++..++.+..|++|+++.+... .....
T Consensus 78 ~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~--~~~~~ 155 (343)
T 2xzm_R 78 FVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE--CKFSS 155 (343)
T ss_dssp CEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSC--EEEEC
T ss_pred ceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC--ceeee
Confidence 34444443 45666666678887776653322211 112224333 455677888888999999987531 11010
Q ss_pred eeeeecCcceeEEEeeeCCCC----CccccEEEEEeCCCeEEEEEeCCCCceeEeeEEecCCcceEEEEEEecCCCCCCC
Q psy14552 152 SETIQMESEVLCMALSNAPSG----EQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSS 227 (290)
Q Consensus 152 ~~~~~l~~ei~~l~i~~~~~~----~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~~~~~~~~~~~~ 227 (290)
.....-...+.++.+.+.... .....+++.|.+||.|.+|.... .... .+..-...+.-+.+.
T Consensus 156 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~----~~~~--~~~~h~~~v~~~~~s------- 222 (343)
T 2xzm_R 156 AEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF----QIRY--TFKAHESNVNHLSIS------- 222 (343)
T ss_dssp CTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT----EEEE--EEECCSSCEEEEEEC-------
T ss_pred ecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCC----ceeE--EEcCccccceEEEEC-------
Confidence 000023456888888754311 01236899999999999998431 1111 111111122223331
Q ss_pred CCCCCCccCCceEEEEEecCceEEEEEE
Q psy14552 228 DEPAGPVTLGNLYLYVGLQNGALLRMVV 255 (290)
Q Consensus 228 ~~~~~~~~~~~~~L~iGl~dG~l~~~~~ 255 (290)
....+|..|-.||.+.-+.+
T Consensus 223 --------~~g~~l~sgs~dg~v~iwd~ 242 (343)
T 2xzm_R 223 --------PNGKYIATGGKDKKLLIWDI 242 (343)
T ss_dssp --------TTSSEEEEEETTCEEEEEES
T ss_pred --------CCCCEEEEEcCCCeEEEEEC
Confidence 12346889999999887766
No 97
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=94.87 E-value=2.3 Score=38.86 Aligned_cols=108 Identities=9% Similarity=0.106 Sum_probs=67.9
Q ss_pred ceEEEEeec--CceEEEEeeCCeEEEEEecCCCceec-CCCceEEEE-EeCCCEEEEEEeCCeEEEEEEcCCCCCceeee
Q psy14552 77 KKIVRCAVN--QRQIVIALQGGRLIYFEMHPVSDKKE-SDKKKIVRC-AVNQRQIVIALQGGRLIYFEMHPETGILDECS 152 (290)
Q Consensus 77 ~~Iv~as~n--~~qv~ial~~g~i~~~~~~~~~~~~~-~~~~~Ii~a-s~~~~~l~Val~~~~i~~l~l~~~~~~l~~~~ 152 (290)
..|.++..+ .++++.+..+|.|..+.+........ ..+...+.+ +.++..++.+..|+.|+++.+.. +. ..
T Consensus 311 ~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~v~vwd~~~--~~--~~- 385 (464)
T 3v7d_B 311 DRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDAND--YS--RK- 385 (464)
T ss_dssp SCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSEEEEEETTSEEEEEETTT--CC--EE-
T ss_pred CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEcCCEEEEEeCCCcEEEEECCC--Cc--ee-
Confidence 445555554 56888888889988887653221111 222222333 56677788888899999998875 21 21
Q ss_pred eeeecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCC
Q psy14552 153 ETIQMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQ 196 (290)
Q Consensus 153 ~~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~ 196 (290)
.....+..+.++.+.+. ..++++|. ||.+.+|.+...
T Consensus 386 ~~~~~~~~~~~~~~~~~------~~~l~~~~-dg~i~iwd~~~g 422 (464)
T 3v7d_B 386 FSYHHTNLSAITTFYVS------DNILVSGS-ENQFNIYNLRSG 422 (464)
T ss_dssp EEEECTTCCCEEEEEEC------SSEEEEEE-TTEEEEEETTTC
T ss_pred eeecCCCCccEEEEEeC------CCEEEEec-CCeEEEEECCCC
Confidence 12334455666666543 46888887 999999998643
No 98
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=94.85 E-value=2.6 Score=39.51 Aligned_cols=143 Identities=12% Similarity=0.089 Sum_probs=81.4
Q ss_pred eEEEEee--cCceEEEEeeCCeEEEEEecCCCceec---CCCceEEEE--EeCCCEEEEEEeCCeEEEEEEcCCCCCcee
Q psy14552 78 KIVRCAV--NQRQIVIALQGGRLIYFEMHPVSDKKE---SDKKKIVRC--AVNQRQIVIALQGGRLIYFEMHPETGILDE 150 (290)
Q Consensus 78 ~Iv~as~--n~~qv~ial~~g~i~~~~~~~~~~~~~---~~~~~Ii~a--s~~~~~l~Val~~~~i~~l~l~~~~~~l~~ 150 (290)
.|.+++. +..+++.+..+|.|..+..+ .+... .....+.+. +.++..++.+..|+.|+++.++. .+..
T Consensus 387 ~v~~~~~s~dg~~l~~~~~d~~v~~~~~~--~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~---~~~~ 461 (577)
T 2ymu_A 387 SVRGVAFSPDGQTIASASDDKTVKLWNRN--GQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNG---QLLQ 461 (577)
T ss_dssp CEEEEEECTTSSCEEEEETTSEEEEECTT--CCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTS---CEEE
T ss_pred CeEEEEECCCCCEEEEEeCCCEEEEEeCC--CCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCC---CEEE
Confidence 4444443 34566666677777655432 22111 111223222 45667788888899999987543 2211
Q ss_pred eeeeeecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEecCCcceEEEEEEecCCCCCCCCCC
Q psy14552 151 CSETIQMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEP 230 (290)
Q Consensus 151 ~~~~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~~~~~~~~~~~~~~~ 230 (290)
. -..-...|.++++.+. ..+|+.|..|+.|.+|..+. ..+.... .-.....++.+.
T Consensus 462 ~--~~~~~~~v~~~~~spd------~~~las~~~d~~i~iw~~~~-~~~~~~~--~h~~~v~~l~~s------------- 517 (577)
T 2ymu_A 462 T--LTGHSSSVRGVAFSPD------GQTIASASDDKTVKLWNRNG-QLLQTLT--GHSSSVRGVAFS------------- 517 (577)
T ss_dssp E--EECCSSCEEEEEECTT------SCEEEEEETTSEEEEEETTS-CEEEEEE--CCSSCEEEEEEC-------------
T ss_pred E--EcCCCCCEEEEEEcCC------CCEEEEEeCCCEEEEEcCCC-CEEEEEe--CCCCCEEEEEEc-------------
Confidence 1 1224678888988643 46899999999999999642 2222221 111222333322
Q ss_pred CCCccCCceEEEEEecCceEEEEE
Q psy14552 231 AGPVTLGNLYLYVGLQNGALLRMV 254 (290)
Q Consensus 231 ~~~~~~~~~~L~iGl~dG~l~~~~ 254 (290)
....+|..|-.||.+.-|.
T Consensus 518 -----~dg~~l~s~~~dg~v~lwd 536 (577)
T 2ymu_A 518 -----PDGQTIASASDDKTVKLWN 536 (577)
T ss_dssp -----TTSSCEEEEETTSEEEEEC
T ss_pred -----CCCCEEEEEECcCEEEEEe
Confidence 1223588999999877664
No 99
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=94.78 E-value=1.8 Score=37.35 Aligned_cols=115 Identities=17% Similarity=0.293 Sum_probs=65.0
Q ss_pred EeCCCEEEEEEe-CCe-EEEEEEcCCCCCceeee-eeeecCcceeEEEeeeCCCCCccccEEEEEeC-CCeEEEEEeCCC
Q psy14552 121 AVNQRQIVIALQ-GGR-LIYFEMHPETGILDECS-ETIQMESEVLCMALSNAPSGEQMSRFLAVGLA-DNTVRLISLAPQ 196 (290)
Q Consensus 121 s~~~~~l~Val~-~~~-i~~l~l~~~~~~l~~~~-~~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~-dg~v~i~~l~~~ 196 (290)
+.++..++++.. ++. +.++.++.+ +.+.... ........+..+.+.+. ..+++++.+ ++.+.+|.++..
T Consensus 136 spdg~~l~~~~~~~~~~i~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~spd------g~~l~v~~~~~~~v~v~d~~~~ 208 (331)
T 3u4y_A 136 SPNGNGLILIDRSSANTVRRFKIDAD-GVLFDTGQEFISGGTRPFNITFTPD------GNFAFVANLIGNSIGILETQNP 208 (331)
T ss_dssp CTTSSCEEEEEETTTTEEEEEEECTT-CCEEEEEEEEECSSSSEEEEEECTT------SSEEEEEETTTTEEEEEECSST
T ss_pred CCCCCEEEEEecCCCceEEEEEECCC-CcEeecCCccccCCCCccceEECCC------CCEEEEEeCCCCeEEEEECCCC
Confidence 455556777655 467 999998863 4443321 12233455667777542 356666664 899999998644
Q ss_pred CceeEeeEEecCCcceEEEEEEecCCCCCCCCCCCCCccCCceEEEEEec-CceEEEEEEeCCCCcc
Q psy14552 197 DCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAGPVTLGNLYLYVGLQ-NGALLRMVVDQTSGDL 262 (290)
Q Consensus 197 ~~l~~~~~~~L~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~~~~~L~iGl~-dG~l~~~~~d~~~~~l 262 (290)
..+..+.....+..|..+.+.. ++. +|+++-+ ++.+.. +|..++.+
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~sp-----------------dg~-~l~v~~~~~~~i~~--~d~~~~~~ 255 (331)
T 3u4y_A 209 ENITLLNAVGTNNLPGTIVVSR-----------------DGS-TVYVLTESTVDVFN--FNQLSGTL 255 (331)
T ss_dssp TSCEEEEEEECSSCCCCEEECT-----------------TSS-EEEEECSSEEEEEE--EETTTTEE
T ss_pred cccceeeeccCCCCCceEEECC-----------------CCC-EEEEEEcCCCEEEE--EECCCCce
Confidence 3323233334455666665442 233 4666654 555444 46666655
No 100
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=94.76 E-value=2.2 Score=38.32 Aligned_cols=109 Identities=10% Similarity=0.102 Sum_probs=62.0
Q ss_pred EeCCCEEEEEEeCC----eEEEEEEcCCCCCceeeeeeee---cCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEe
Q psy14552 121 AVNQRQIVIALQGG----RLIYFEMHPETGILDECSETIQ---MESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISL 193 (290)
Q Consensus 121 s~~~~~l~Val~~~----~i~~l~l~~~~~~l~~~~~~~~---l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l 193 (290)
+.++..++.+..++ .++...+.. ... ....... -...|.++++.+. ..+|++|..||+|.+|.+
T Consensus 228 spdg~~l~~~s~d~~~~~~i~~~~~~~--~~~-~~~~~~~~~~~~~~V~~~~~Spd------g~~lasgs~D~~V~iwd~ 298 (365)
T 4h5i_A 228 IADDTVLIAASLKKGKGIVLTKISIKS--GNT-SVLRSKQVTNRFKGITSMDVDMK------GELAVLASNDNSIALVKL 298 (365)
T ss_dssp EETTEEEEEEEESSSCCEEEEEEEEET--TEE-EEEEEEEEESSCSCEEEEEECTT------SCEEEEEETTSCEEEEET
T ss_pred cCCCCEEEEEecCCcceeEEeeccccc--cee-cceeeeeecCCCCCeEeEEECCC------CCceEEEcCCCEEEEEEC
Confidence 45566666665554 345555543 111 1111111 2456889998753 479999999999999998
Q ss_pred CCCCceeEeeEEecCCcceEEEEEEecCCCCCCCCCCCCCccCCceEEEEEecCceEEEEEEeC
Q psy14552 194 APQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAGPVTLGNLYLYVGLQNGALLRMVVDQ 257 (290)
Q Consensus 194 ~~~~~l~~~~~~~L~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~~~~~L~iGl~dG~l~~~~~d~ 257 (290)
.. .+.+.. .+..=...+.-+.|. ....+|.-|=.||.+--+.+..
T Consensus 299 ~~---~~~~~~-~~~gH~~~V~~v~fS---------------pdg~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 299 KD---LSMSKI-FKQAHSFAITEVTIS---------------PDSTYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp TT---TEEEEE-ETTSSSSCEEEEEEC---------------TTSCEEEEEETTSEEEEEECCT
T ss_pred CC---CcEEEE-ecCcccCCEEEEEEC---------------CCCCEEEEEeCCCeEEEEEcCC
Confidence 63 233321 122101122223331 1234688999999999898843
No 101
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=94.68 E-value=2.3 Score=38.17 Aligned_cols=154 Identities=12% Similarity=0.098 Sum_probs=85.1
Q ss_pred ceEEEEeec---CceEEEEeeCCeEEEEEecCCCc-eec-C-CCceE--EEEEeCCCEEEEEEeCCeEEEEEEcCCCCCc
Q psy14552 77 KKIVRCAVN---QRQIVIALQGGRLIYFEMHPVSD-KKE-S-DKKKI--VRCAVNQRQIVIALQGGRLIYFEMHPETGIL 148 (290)
Q Consensus 77 ~~Iv~as~n---~~qv~ial~~g~i~~~~~~~~~~-~~~-~-~~~~I--i~as~~~~~l~Val~~~~i~~l~l~~~~~~l 148 (290)
..|...+.+ ..+++-+-.+|.|....+..... ... . ....| ++.+.++..++.|..|++|+++.+.. +..
T Consensus 206 ~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~--~~~ 283 (380)
T 3iz6_a 206 ADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRT--GHQ 283 (380)
T ss_dssp SCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTT--TEE
T ss_pred cCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCC--CcE
Confidence 345555553 45666777788888776542211 111 1 11123 22245667788887899999998765 221
Q ss_pred eeeeeeee-----cCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEecC--CcceEEEEEEecC
Q psy14552 149 DECSETIQ-----MESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLP--DLAESLVMIEMGA 221 (290)
Q Consensus 149 ~~~~~~~~-----l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~--~~p~Sl~~~~~~~ 221 (290)
........ ....+.++++.+. ..++++|..||.+.+|.+.....+.......-+ ....++.+.
T Consensus 284 ~~~~~~~~~~~~~~~~~v~~~~~s~~------g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s---- 353 (380)
T 3iz6_a 284 LQVYNREPDRNDNELPIVTSVAFSIS------GRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLS---- 353 (380)
T ss_dssp EEEECCCCSSSCCSSCSCSEEEECSS------SSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEEC----
T ss_pred EEEecccccccccccCceEEEEECCC------CCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEEC----
Confidence 11111000 0113677887643 478999999999999997533222221100001 112333222
Q ss_pred CCCCCCCCCCCCccCCceEEEEEecCceEEEEEEe
Q psy14552 222 SDPTSSDEPAGPVTLGNLYLYVGLQNGALLRMVVD 256 (290)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~L~iGl~dG~l~~~~~d 256 (290)
....+|..|-.||.+.-+.+.
T Consensus 354 --------------~dg~~l~sgs~D~~i~iW~~~ 374 (380)
T 3iz6_a 354 --------------SDGSALCTGSWDKNLKIWAFS 374 (380)
T ss_dssp --------------SSSSEEEEECTTSCEEEEECC
T ss_pred --------------CCCCEEEEeeCCCCEEEEecC
Confidence 123368999999999888653
No 102
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=94.65 E-value=0.6 Score=42.95 Aligned_cols=112 Identities=13% Similarity=0.179 Sum_probs=66.6
Q ss_pred CceEEEEeec---CceEEEEeeCCeEEEEEecCCC--ceec-CCC-ceEEEE--E-eCCCEEEEEEeCCeEEEEEEcCCC
Q psy14552 76 KKKIVRCAVN---QRQIVIALQGGRLIYFEMHPVS--DKKE-SDK-KKIVRC--A-VNQRQIVIALQGGRLIYFEMHPET 145 (290)
Q Consensus 76 ~~~Iv~as~n---~~qv~ial~~g~i~~~~~~~~~--~~~~-~~~-~~Ii~a--s-~~~~~l~Val~~~~i~~l~l~~~~ 145 (290)
..+|.+.+.+ +..++.+..+|.|....++... .... ..+ ..|.+. + .++..++.|..|++|++..+..
T Consensus 119 ~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~-- 196 (435)
T 4e54_B 119 DRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKG-- 196 (435)
T ss_dssp SSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTS--
T ss_pred CCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccC--
Confidence 4557777765 3457777788998877654221 1111 111 123222 3 3456677777799999998754
Q ss_pred CCceeeeeeeecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCC
Q psy14552 146 GILDECSETIQMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAP 195 (290)
Q Consensus 146 ~~l~~~~~~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~ 195 (290)
+.+............+.++++.+. ..++++|..||.|.+|.++.
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~l~~g~~dg~i~~wd~~~ 240 (435)
T 4e54_B 197 NILRVFASSDTINIWFCSLDVSAS------SRMVVTGDNVGNVILLNMDG 240 (435)
T ss_dssp CEEEEEECCSSCSCCCCCEEEETT------TTEEEEECSSSBEEEEESSS
T ss_pred CceeEEeccCCCCccEEEEEECCC------CCEEEEEeCCCcEeeeccCc
Confidence 222111111123344667777542 47899999999999999863
No 103
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=94.63 E-value=1.4 Score=42.69 Aligned_cols=142 Identities=14% Similarity=0.095 Sum_probs=82.5
Q ss_pred CceEEEEeeCCeEEEEEecCCCceec----CCCceEEEE--EeCCCEEEEEEeCCeEEEEEEcCCCCCceeeeeeee-cC
Q psy14552 86 QRQIVIALQGGRLIYFEMHPVSDKKE----SDKKKIVRC--AVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQ-ME 158 (290)
Q Consensus 86 ~~qv~ial~~g~i~~~~~~~~~~~~~----~~~~~Ii~a--s~~~~~l~Val~~~~i~~l~l~~~~~~l~~~~~~~~-l~ 158 (290)
..+++.+..+|.|..+.+.. ..+.. .....+.+. +.++..++.+..|++|+++.+... +.+... .... -.
T Consensus 460 g~~lasgs~D~~v~lwd~~~-~~~~~~~~~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~-~~~~~~-~~~~~H~ 536 (611)
T 1nr0_A 460 KQFVAVGGQDSKVHVYKLSG-ASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANN-FELAHT-NSWTFHT 536 (611)
T ss_dssp SCEEEEEETTSEEEEEEEET-TEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGT-TEESCC-CCCCCCS
T ss_pred CCEEEEeCCCCeEEEEEccC-CceeeeeccCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCC-Cceeee-eeeeecc
Confidence 56677777778887776642 22211 111123222 566777888888999999987641 222110 0011 24
Q ss_pred cceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEecCCc-ceEEEEEEecCCCCCCCCCCCCCccCC
Q psy14552 159 SEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDL-AESLVMIEMGASDPTSSDEPAGPVTLG 237 (290)
Q Consensus 159 ~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~~~-p~Sl~~~~~~~~~~~~~~~~~~~~~~~ 237 (290)
..|.++++.+. ..+|+.|..|++|.+|.++...... . ..+..- ...+.-+.+.. ++
T Consensus 537 ~~V~~v~fspd------g~~lasgs~D~~v~lW~~~~~~~~~-~--~~~~~h~~~~v~~v~fs~--------------d~ 593 (611)
T 1nr0_A 537 AKVACVSWSPD------NVRLATGSLDNSVIVWNMNKPSDHP-I--IIKGAHAMSSVNSVIWLN--------------ET 593 (611)
T ss_dssp SCEEEEEECTT------SSEEEEEETTSCEEEEETTCTTSCC-E--EETTSSTTSCEEEEEEEE--------------TT
T ss_pred cceeEEEECCC------CCEEEEEECCCcEEEEECCCccccc-c--hhhccCcccCeeEEEEcC--------------CC
Confidence 67889998753 4789999999999999997432111 0 112211 22233333311 23
Q ss_pred ceEEEEEecCceEEEEEE
Q psy14552 238 NLYLYVGLQNGALLRMVV 255 (290)
Q Consensus 238 ~~~L~iGl~dG~l~~~~~ 255 (290)
. |+-|-.||.+.-+.+
T Consensus 594 ~--l~s~~~D~~i~lW~~ 609 (611)
T 1nr0_A 594 T--IVSAGQDSNIKFWNV 609 (611)
T ss_dssp E--EEEEETTSCEEEEEC
T ss_pred E--EEEecCCCCEEEEec
Confidence 3 888999998876654
No 104
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=94.50 E-value=2.1 Score=36.79 Aligned_cols=109 Identities=8% Similarity=0.144 Sum_probs=65.7
Q ss_pred EeCCCEEEEEEeCCeEEEEEEcCCCCCceeeeeeeecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCcee
Q psy14552 121 AVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLK 200 (290)
Q Consensus 121 s~~~~~l~Val~~~~i~~l~l~~~~~~l~~~~~~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~ 200 (290)
+.++..++.|..|+.|+++.+.. . .......-...+.++.+.+ ..++++|..|+.+.+|.++....+.
T Consensus 224 s~~~~~l~s~s~Dg~i~iwd~~~--~---~~~~~~~~~~~v~~~~~~~-------~~~~~~~~~d~~i~iwd~~~~~~~~ 291 (340)
T 4aow_A 224 SPDGSLCASGGKDGQAMLWDLNE--G---KHLYTLDGGDIINALCFSP-------NRYWLCAATGPSIKIWDLEGKIIVD 291 (340)
T ss_dssp CTTSSEEEEEETTCEEEEEETTT--T---EEEEEEECSSCEEEEEECS-------SSSEEEEEETTEEEEEETTTTEEEE
T ss_pred CCCCCEEEEEeCCCeEEEEEecc--C---ceeeeecCCceEEeeecCC-------CCceeeccCCCEEEEEECCCCeEEE
Confidence 45566788888899999998765 2 1223445566788887753 2345667779999999986432222
Q ss_pred EeeEEec----CCcceEEEEEEecCCCCCCCCCCCCCccCCceEEEEEecCceEEEEEEe
Q psy14552 201 QKNLQGL----PDLAESLVMIEMGASDPTSSDEPAGPVTLGNLYLYVGLQNGALLRMVVD 256 (290)
Q Consensus 201 ~~~~~~L----~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~~~~~L~iGl~dG~l~~~~~d 256 (290)
..+.... ..-+..+.-+.+. ....+|+.|-.||.+.-|++.
T Consensus 292 ~~~~~~~~~~~~~h~~~v~~l~~s---------------~dg~~l~sgs~Dg~v~iW~~~ 336 (340)
T 4aow_A 292 ELKQEVISTSSKAEPPQCTSLAWS---------------ADGQTLFAGYTDNLVRVWQVT 336 (340)
T ss_dssp EECCC-------CCCCCEEEEEEC---------------TTSSEEEEEETTSCEEEEEEE
T ss_pred eccccceeeeccCCCCCEEEEEEC---------------CCCCEEEEEeCCCEEEEEeCC
Confidence 2211111 1122233333331 123469999999999888764
No 105
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=94.48 E-value=5.3 Score=41.64 Aligned_cols=65 Identities=8% Similarity=0.130 Sum_probs=46.4
Q ss_pred EeCCCEEEEEEeCCeEEEEEEcCCCCCceeeeeeeecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCC
Q psy14552 121 AVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAP 195 (290)
Q Consensus 121 s~~~~~l~Val~~~~i~~l~l~~~~~~l~~~~~~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~ 195 (290)
+.++..+++|..++.|+++.+.. +..... ...-...|.++++.+. ..+++.|..||.+.+|.+..
T Consensus 970 sp~g~~l~~g~~~g~i~i~d~~~--~~~~~~--~~~h~~~v~~l~~s~d------g~~l~s~~~dg~i~vwd~~~ 1034 (1249)
T 3sfz_A 970 SPHLEYVAFGDEDGAIKIIELPN--NRVFSS--GVGHKKAVRHIQFTAD------GKTLISSSEDSVIQVWNWQT 1034 (1249)
T ss_dssp CTTSSEEEEEETTSCCEEEETTT--TSCEEE--CCCCSSCCCCEEECSS------SSCEEEECSSSBEEEEETTT
T ss_pred cCCCCEEEEEcCCCCEEEEEcCC--Cceeee--cccCCCceEEEEECCC------CCEEEEEcCCCEEEEEECCC
Confidence 45567789998899999998875 322111 1123567888888643 46899999999999999864
No 106
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=94.47 E-value=2.4 Score=37.31 Aligned_cols=110 Identities=16% Similarity=0.112 Sum_probs=63.6
Q ss_pred eEEEEeecCceEEEEeeCCeEEEEEecCCC-cee----cC-CCceEEEE--EeCCCEEEEEEeCCeEEEEEEcCCC---C
Q psy14552 78 KIVRCAVNQRQIVIALQGGRLIYFEMHPVS-DKK----ES-DKKKIVRC--AVNQRQIVIALQGGRLIYFEMHPET---G 146 (290)
Q Consensus 78 ~Iv~as~n~~qv~ial~~g~i~~~~~~~~~-~~~----~~-~~~~Ii~a--s~~~~~l~Val~~~~i~~l~l~~~~---~ 146 (290)
.|.+.+.+..+++.+-.+|.|..+.+.... ... .. ....|.+. +.++..++.|..|++|++..+.... .
T Consensus 16 ~v~~~~~s~~~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~ 95 (330)
T 2hes_X 16 KIWSFDFSQGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTF 95 (330)
T ss_dssp CEEEEEEETTEEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------C
T ss_pred ceeeeccCCCEEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccc
Confidence 355555555566666677888777664321 111 11 12234333 4556678888889999999875310 0
Q ss_pred Cceeeeeee-ecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeC
Q psy14552 147 ILDECSETI-QMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLA 194 (290)
Q Consensus 147 ~l~~~~~~~-~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~ 194 (290)
.. +....+ .-...|.++++.+. ..+|+.|..||++.+|.++
T Consensus 96 ~~-~~~~~~~~h~~~V~~v~~sp~------g~~las~s~D~~v~iwd~~ 137 (330)
T 2hes_X 96 EM-DLLAIIEGHENEVKGVAWSND------GYYLATCSRDKSVWIWETD 137 (330)
T ss_dssp CC-EEEEEEC----CEEEEEECTT------SCEEEEEETTSCEEEEECC
T ss_pred cc-eeEEEEcCCCCcEEEEEECCC------CCEEEEEeCCCEEEEEecc
Confidence 11 111111 13467888988643 4689999999999999984
No 107
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=94.26 E-value=1.8 Score=39.01 Aligned_cols=142 Identities=10% Similarity=0.157 Sum_probs=79.2
Q ss_pred ceEEEEeeCCeEEEEEecCCCcee-------cCCCceEEEEEe---CCCEEEEEEeCCeEEEEEEcCCCCCceeeeeeee
Q psy14552 87 RQIVIALQGGRLIYFEMHPVSDKK-------ESDKKKIVRCAV---NQRQIVIALQGGRLIYFEMHPETGILDECSETIQ 156 (290)
Q Consensus 87 ~qv~ial~~g~i~~~~~~~~~~~~-------~~~~~~Ii~as~---~~~~l~Val~~~~i~~l~l~~~~~~l~~~~~~~~ 156 (290)
.+++.+-.+|.|....+....... ......+.+.+. ++..++.|..|+.|+++.+... ....... ..
T Consensus 171 ~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~-~~~~~~~--~~ 247 (380)
T 3iz6_a 171 TRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRIT-SRAVRTY--HG 247 (380)
T ss_dssp SCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTT-CCCCEEE--CC
T ss_pred CEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCC-CcceEEE--CC
Confidence 346666667777766544222111 111122333332 4556777778999999988641 2111111 12
Q ss_pred cCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEec--C-C--cceEEEEEEecCCCCCCCCCCC
Q psy14552 157 MESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGL--P-D--LAESLVMIEMGASDPTSSDEPA 231 (290)
Q Consensus 157 l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L--~-~--~p~Sl~~~~~~~~~~~~~~~~~ 231 (290)
-...|.++++.+. ..+++.|..||++.+|.+.....+.......- . . ...++.+.
T Consensus 248 h~~~v~~v~~~p~------~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-------------- 307 (380)
T 3iz6_a 248 HEGDINSVKFFPD------GQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFS-------------- 307 (380)
T ss_dssp CSSCCCEEEECTT------SSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEEC--------------
T ss_pred cCCCeEEEEEecC------CCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEEC--------------
Confidence 3467888888643 46899999999999999864333332211110 0 0 11233222
Q ss_pred CCccCCceEEEEEecCceEEEEEE
Q psy14552 232 GPVTLGNLYLYVGLQNGALLRMVV 255 (290)
Q Consensus 232 ~~~~~~~~~L~iGl~dG~l~~~~~ 255 (290)
....+|+.|..||.+.-+.+
T Consensus 308 ----~~g~~l~~g~~dg~i~vwd~ 327 (380)
T 3iz6_a 308 ----ISGRLLFAGYSNGDCYVWDT 327 (380)
T ss_dssp ----SSSSEEEEECTTSCEEEEET
T ss_pred ----CCCCEEEEEECCCCEEEEEC
Confidence 12346999999999887753
No 108
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=94.05 E-value=3 Score=36.89 Aligned_cols=154 Identities=10% Similarity=0.090 Sum_probs=81.1
Q ss_pred CceEEEEee-CCeEEEEEecCCCc-eecCCCceE--EEEEeCCCEEEEEE-eCCeEEEEEEcCCCCCceeeeeeeecCcc
Q psy14552 86 QRQIVIALQ-GGRLIYFEMHPVSD-KKESDKKKI--VRCAVNQRQIVIAL-QGGRLIYFEMHPETGILDECSETIQMESE 160 (290)
Q Consensus 86 ~~qv~ial~-~g~i~~~~~~~~~~-~~~~~~~~I--i~as~~~~~l~Val-~~~~i~~l~l~~~~~~l~~~~~~~~l~~e 160 (290)
..+++++.. ++.|..+.+..... ...+.+... ++.+.++..++++. .++.|+++.+.. +. ..........
T Consensus 127 g~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~--~~---~~~~~~~~~~ 201 (391)
T 1l0q_A 127 GKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVT--NS---VIDTVKVEAA 201 (391)
T ss_dssp SSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTT--TE---EEEEEECSSE
T ss_pred CCEEEEEeCCCCEEEEEECCCCcEEEEEecCCCcceEEECCCCCEEEEEeCCCCEEEEEECCC--Ce---EEEEEecCCC
Confidence 445534433 56776665532211 111112222 22244566665554 478899887764 32 2233445667
Q ss_pred eeEEEeeeCCCCCccccEEEEEe---CCCeEEEEEeCCCCceeEeeEEecCCcceEEEEEEecCCCCCCCCCCCCCccCC
Q psy14552 161 VLCMALSNAPSGEQMSRFLAVGL---ADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAGPVTLG 237 (290)
Q Consensus 161 i~~l~i~~~~~~~~~~~~l~VGl---~dg~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~~ 237 (290)
+.++.+.+. ..+++++. .++.+.+|.+... +.+.....+..|.++.+.. .+
T Consensus 202 ~~~~~~~~~------g~~l~~~~~~~~~~~v~~~d~~~~---~~~~~~~~~~~~~~~~~s~-----------------dg 255 (391)
T 1l0q_A 202 PSGIAVNPE------GTKAYVTNVDKYFNTVSMIDTGTN---KITARIPVGPDPAGIAVTP-----------------DG 255 (391)
T ss_dssp EEEEEECTT------SSEEEEEEECSSCCEEEEEETTTT---EEEEEEECCSSEEEEEECT-----------------TS
T ss_pred ccceEECCC------CCEEEEEecCcCCCcEEEEECCCC---eEEEEEecCCCccEEEEcc-----------------CC
Confidence 777777542 45777777 6899999998632 2222233344455544331 23
Q ss_pred ceEEE-EEecCceEEEEEEeCCCCcccccceEEecCcce
Q psy14552 238 NLYLY-VGLQNGALLRMVVDQTSGDLSDNRMRYLGSRPV 275 (290)
Q Consensus 238 ~~~L~-iGl~dG~l~~~~~d~~~~~l~~~~~~~lG~~pv 275 (290)
. +|+ .+-.||.+.-+ |..++++. +....|..|.
T Consensus 256 ~-~l~~s~~~d~~v~v~--d~~~~~~~--~~~~~~~~~~ 289 (391)
T 1l0q_A 256 K-KVYVALSFXNTVSVI--DTATNTIT--ATMAVGKNPY 289 (391)
T ss_dssp S-EEEEEETTTTEEEEE--ETTTTEEE--EEEECSSSEE
T ss_pred C-EEEEEcCCCCEEEEE--ECCCCcEE--EEEECCcCCC
Confidence 3 354 44678887766 45556543 2344555553
No 109
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=94.00 E-value=2.7 Score=36.26 Aligned_cols=110 Identities=7% Similarity=0.062 Sum_probs=67.2
Q ss_pred CceEEEEeec---CceEEEEeeCCeEEEEEecCCCceec-----CCCceEEEE--EeCCCEEEEEEeCCeEEEEEEcCCC
Q psy14552 76 KKKIVRCAVN---QRQIVIALQGGRLIYFEMHPVSDKKE-----SDKKKIVRC--AVNQRQIVIALQGGRLIYFEMHPET 145 (290)
Q Consensus 76 ~~~Iv~as~n---~~qv~ial~~g~i~~~~~~~~~~~~~-----~~~~~Ii~a--s~~~~~l~Val~~~~i~~l~l~~~~ 145 (290)
...|.+.+.+ ..+++.+..+|.|..+.+........ .....+.+. +.++..++.+..|+.|+++.+..
T Consensus 115 ~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~-- 192 (366)
T 3k26_A 115 GNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINS-- 192 (366)
T ss_dssp CSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCS--
T ss_pred CCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCC--
Confidence 3456666654 46677777788888887653322111 122234333 45566788888899999998764
Q ss_pred CCceeeee-------------------------e-eecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCC
Q psy14552 146 GILDECSE-------------------------T-IQMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAP 195 (290)
Q Consensus 146 ~~l~~~~~-------------------------~-~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~ 195 (290)
+....... . ......|.++++. ..++++|..||.+.+|.+..
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--------~~~l~~~~~d~~i~~wd~~~ 260 (366)
T 3k26_A 193 KRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--------GDLILSKSCENAIVCWKPGK 260 (366)
T ss_dssp HHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--------TTEEEEECSSSEEEEEEESS
T ss_pred CccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--------CCEEEEEecCCEEEEEeCCC
Confidence 11100000 0 0034567777774 35899999999999999864
No 110
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=93.96 E-value=0.99 Score=44.30 Aligned_cols=111 Identities=16% Similarity=0.208 Sum_probs=63.9
Q ss_pred EEEEeec--CceEEEEeeCCeEEEEEecCCCceec--CCCceEEEE--EeCCCEEEEEEeCCeEEEEEEcCCCCCceeee
Q psy14552 79 IVRCAVN--QRQIVIALQGGRLIYFEMHPVSDKKE--SDKKKIVRC--AVNQRQIVIALQGGRLIYFEMHPETGILDECS 152 (290)
Q Consensus 79 Iv~as~n--~~qv~ial~~g~i~~~~~~~~~~~~~--~~~~~Ii~a--s~~~~~l~Val~~~~i~~l~l~~~~~~l~~~~ 152 (290)
|.+++.+ ..+++.+..+|.|....+........ .....|.++ +.++..++.+..|++|++..+... ....+.
T Consensus 433 v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~--~~~~~~ 510 (694)
T 3dm0_A 433 VEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGE--CKYTIS 510 (694)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSC--EEEEEC
T ss_pred EEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCC--cceeec
Confidence 4444433 55666666678887776543211111 112224333 445667888888999999865431 100110
Q ss_pred ee-eecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCC
Q psy14552 153 ET-IQMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAP 195 (290)
Q Consensus 153 ~~-~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~ 195 (290)
.. ..-...|.|+++.+.. ...+++.|.+||.|.+|.+..
T Consensus 511 ~~~~~h~~~v~~~~~~~~~----~~~~l~s~s~d~~v~vwd~~~ 550 (694)
T 3dm0_A 511 EGGEGHRDWVSCVRFSPNT----LQPTIVSASWDKTVKVWNLSN 550 (694)
T ss_dssp SSTTSCSSCEEEEEECSCS----SSCEEEEEETTSCEEEEETTT
T ss_pred cCCCCCCCcEEEEEEeCCC----CcceEEEEeCCCeEEEEECCC
Confidence 00 0123458899886532 246899999999999999864
No 111
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=93.87 E-value=3.1 Score=36.36 Aligned_cols=108 Identities=10% Similarity=0.131 Sum_probs=62.7
Q ss_pred eEEEEeec--CceEEEEeeCCeEEEEEecCCCceec-CCCc-eEEEEE--e------CCCEEEEEEeCCeEEEEEEcCCC
Q psy14552 78 KIVRCAVN--QRQIVIALQGGRLIYFEMHPVSDKKE-SDKK-KIVRCA--V------NQRQIVIALQGGRLIYFEMHPET 145 (290)
Q Consensus 78 ~Iv~as~n--~~qv~ial~~g~i~~~~~~~~~~~~~-~~~~-~Ii~as--~------~~~~l~Val~~~~i~~l~l~~~~ 145 (290)
.|.+++.+ ..+++.+-.+|.|....+... .... ..+. .+.+.. . ++..++.+..|+.|++..+..
T Consensus 109 ~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~-~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~-- 185 (319)
T 3frx_A 109 DVMSVDIDKKASMIISGSRDKTIKVWTIKGQ-CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQ-- 185 (319)
T ss_dssp CEEEEEECTTSCEEEEEETTSCEEEEETTSC-EEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTT--
T ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-eEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCc--
Confidence 45555554 456666667787777665321 1111 1111 121112 1 123477777799999998765
Q ss_pred CCceeeeeeeecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCC
Q psy14552 146 GILDECSETIQMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQ 196 (290)
Q Consensus 146 ~~l~~~~~~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~ 196 (290)
..+.. .-..-...|.++++.+. ..+|+.|..||.|.+|.+...
T Consensus 186 ~~~~~--~~~~h~~~v~~~~~sp~------g~~l~s~~~dg~i~iwd~~~~ 228 (319)
T 3frx_A 186 FQIEA--DFIGHNSNINTLTASPD------GTLIASAGKDGEIMLWNLAAK 228 (319)
T ss_dssp TEEEE--EECCCCSCEEEEEECTT------SSEEEEEETTCEEEEEETTTT
T ss_pred chhhe--eecCCCCcEEEEEEcCC------CCEEEEEeCCCeEEEEECCCC
Confidence 22111 11123567888888642 468999999999999998643
No 112
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=93.84 E-value=3.1 Score=36.32 Aligned_cols=144 Identities=8% Similarity=0.020 Sum_probs=79.0
Q ss_pred CceEEEEeeCCeEEEEEecCCCceec--CCCceEEEE--EeCCCEEEEEEeCCeEEEEEEcCCCCCceeeeeeeecCcce
Q psy14552 86 QRQIVIALQGGRLIYFEMHPVSDKKE--SDKKKIVRC--AVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQMESEV 161 (290)
Q Consensus 86 ~~qv~ial~~g~i~~~~~~~~~~~~~--~~~~~Ii~a--s~~~~~l~Val~~~~i~~l~l~~~~~~l~~~~~~~~l~~ei 161 (290)
..+++-+-.+|.|....+........ .....+.+. +.++..++.|..|++|++..+.. ..+..+ ..-...+
T Consensus 77 g~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~--~~~~~~---~~h~~~v 151 (319)
T 3frx_A 77 GAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG--QCLATL---LGHNDWV 151 (319)
T ss_dssp SSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS--CEEEEE---CCCSSCE
T ss_pred CCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC--CeEEEE---eccCCcE
Confidence 55666666778887776643221111 111224333 34456688888899999998754 111111 1234567
Q ss_pred eEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEe-cCCcceEEEEEEecCCCCCCCCCCCCCccCCceE
Q psy14552 162 LCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQG-LPDLAESLVMIEMGASDPTSSDEPAGPVTLGNLY 240 (290)
Q Consensus 162 ~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~-L~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (290)
.++.+.+.........+++.|..||.+.+|.+... ....... -.....++... ....+
T Consensus 152 ~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~---~~~~~~~~h~~~v~~~~~s------------------p~g~~ 210 (319)
T 3frx_A 152 SQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF---QIEADFIGHNSNINTLTAS------------------PDGTL 210 (319)
T ss_dssp EEEEECCC------CCEEEEEETTSCEEEEETTTT---EEEEEECCCCSCEEEEEEC------------------TTSSE
T ss_pred EEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcc---hhheeecCCCCcEEEEEEc------------------CCCCE
Confidence 77777654221123458999999999999998642 1111111 11112222221 12346
Q ss_pred EEEEecCceEEEEEE
Q psy14552 241 LYVGLQNGALLRMVV 255 (290)
Q Consensus 241 L~iGl~dG~l~~~~~ 255 (290)
|..|-.||.+.-+.+
T Consensus 211 l~s~~~dg~i~iwd~ 225 (319)
T 3frx_A 211 IASAGKDGEIMLWNL 225 (319)
T ss_dssp EEEEETTCEEEEEET
T ss_pred EEEEeCCCeEEEEEC
Confidence 888999999887754
No 113
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=93.43 E-value=1.4 Score=41.08 Aligned_cols=110 Identities=15% Similarity=0.173 Sum_probs=62.7
Q ss_pred EeCCCEEEEEE----eCCeEEEEEEcCC-CC--Cceeeeeeee----cCcceeEEEeeeCCCCCccccEEEEEeCCCeEE
Q psy14552 121 AVNQRQIVIAL----QGGRLIYFEMHPE-TG--ILDECSETIQ----MESEVLCMALSNAPSGEQMSRFLAVGLADNTVR 189 (290)
Q Consensus 121 s~~~~~l~Val----~~~~i~~l~l~~~-~~--~l~~~~~~~~----l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~ 189 (290)
+.++..++|+. .|+.|+++.+... .+ .......... -...|.++++.+. ...+++.|..||+|.
T Consensus 101 spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~-----~~~~las~s~Dg~v~ 175 (434)
T 2oit_A 101 SCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPT-----VPSMVAVCLADGSIA 175 (434)
T ss_dssp CTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSS-----CTTEEEEEETTSCEE
T ss_pred cCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCC-----CCCEEEEEECCCeEE
Confidence 45566777632 3788999887531 00 0000001112 2567889988754 256899999999999
Q ss_pred EEEeCCCCceeEeeEEecCCcceEEEEEEecCCCCCCCCCCCCCccCCceEEEEEecCceEEEEEE
Q psy14552 190 LISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAGPVTLGNLYLYVGLQNGALLRMVV 255 (290)
Q Consensus 190 i~~l~~~~~l~~~~~~~L~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~~~~~L~iGl~dG~l~~~~~ 255 (290)
+|.+.... ...........+.++.... . ..+|.+|..||.+.-|.+
T Consensus 176 iwD~~~~~--~~~~~~~~~~~v~~v~wsp-----------------d-g~~lasgs~dg~v~iwd~ 221 (434)
T 2oit_A 176 VLQVTETV--KVCATLPSTVAVTSVCWSP-----------------K-GKQLAVGKQNGTVVQYLP 221 (434)
T ss_dssp EEEESSSE--EEEEEECGGGCEEEEEECT-----------------T-SSCEEEEETTSCEEEECT
T ss_pred EEEcCCCc--ceeeccCCCCceeEEEEcC-----------------C-CCEEEEEcCCCcEEEEcc
Confidence 99986431 1111111112233333221 2 335899999999887754
No 114
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=93.41 E-value=3.6 Score=39.46 Aligned_cols=91 Identities=19% Similarity=0.251 Sum_probs=62.9
Q ss_pred ccEEEEEeC-CCeEEEEEeCCCCceeEeeEEecCC---------------cceEEEEEEecCCCCCCCCCCCCCccCCce
Q psy14552 176 SRFLAVGLA-DNTVRLISLAPQDCLKQKNLQGLPD---------------LAESLVMIEMGASDPTSSDEPAGPVTLGNL 239 (290)
Q Consensus 176 ~~~l~VGl~-dg~v~i~~l~~~~~l~~~~~~~L~~---------------~p~Sl~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (290)
..||.|+.| .+.|.+|.+.....++.+....++. -|+.+.+.. ++ -
T Consensus 332 GrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSp-----------------DG-k 393 (462)
T 2ece_A 332 DKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISR-----------------DG-R 393 (462)
T ss_dssp SCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECT-----------------TS-S
T ss_pred CCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcC-----------------CC-C
Confidence 579999998 8899999985333455555555552 377776552 23 3
Q ss_pred EEEEEe--------------cCceEEEEEEeCCCCcccccc--eEEecCcceEEEEEEeCCcee
Q psy14552 240 YLYVGL--------------QNGALLRMVVDQTSGDLSDNR--MRYLGSRPVKLFKIRCQGNEA 287 (290)
Q Consensus 240 ~L~iGl--------------~dG~l~~~~~d~~~~~l~~~~--~~~lG~~pv~l~~~~~~~~~~ 287 (290)
+|++.- .++.++++.+|+.+| |+-.+ ..=.|. .+-+.++..|.-|
T Consensus 394 ~LyVaNsl~~~wd~Qfyp~~~~~~~~~~~vd~~~G-L~~~~~f~vdf~~--~~~h~~r~~ggd~ 454 (462)
T 2ece_A 394 RVYVTNSLYSTWDNQFYPEGLKGWMVKLNANPSGG-LEIDKEFFVDFGE--ARSHQVRLSGGDA 454 (462)
T ss_dssp EEEEECCCCHHHHHHHSTTCCCCEEEEEEECTTSC-EEEEEEEEEECTT--SEEEEEEETTCCT
T ss_pred EEEEEcCCcccccccccCCCCceEEEEEEecCCCC-ceeCCCEEeeccc--CcceeeecCCCCc
Confidence 599998 477888899999999 86433 233454 6677788877644
No 115
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=93.35 E-value=1.5 Score=38.41 Aligned_cols=112 Identities=14% Similarity=0.107 Sum_probs=66.8
Q ss_pred EeCCCEEEEEEeCCeEEEEEEcCCCCCceeeeeeee-cCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCce
Q psy14552 121 AVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQ-MESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCL 199 (290)
Q Consensus 121 s~~~~~l~Val~~~~i~~l~l~~~~~~l~~~~~~~~-l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l 199 (290)
+.++..++.|..|++|+++.+.. +.. .....+. -...|.++++.+.. ...+|+.|..|+++.+|.+.... .
T Consensus 22 s~~g~~lasgs~D~~v~lwd~~~--~~~-~~~~~l~gH~~~V~~v~~~~~~----~~~~l~s~s~D~~v~iWd~~~~~-~ 93 (316)
T 3bg1_A 22 DYYGTRLATCSSDRSVKIFDVRN--GGQ-ILIADLRGHEGPVWQVAWAHPM----YGNILASCSYDRKVIIWREENGT-W 93 (316)
T ss_dssp CGGGCEEEEEETTTEEEEEEEET--TEE-EEEEEEECCSSCEEEEEECCGG----GSSCEEEEETTSCEEEECCSSSC-C
T ss_pred cCCCCEEEEEeCCCeEEEEEecC--CCc-EEEEEEcCCCccEEEEEeCCCC----CCCEEEEEECCCEEEEEECCCCc-c
Confidence 45567788888899999998875 211 1111121 35678888885321 14689999999999999986321 1
Q ss_pred eEeeEE-ecCCcceEEEEEEecCCCCCCCCCCCCCccCCceEEEEEecCceEEEEEEe
Q psy14552 200 KQKNLQ-GLPDLAESLVMIEMGASDPTSSDEPAGPVTLGNLYLYVGLQNGALLRMVVD 256 (290)
Q Consensus 200 ~~~~~~-~L~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~~~~~L~iGl~dG~l~~~~~d 256 (290)
...... .-.....++.... . ....+|..|-.||.+.-+.+.
T Consensus 94 ~~~~~~~~h~~~V~~v~~~p---~-------------~~g~~lasgs~D~~i~lwd~~ 135 (316)
T 3bg1_A 94 EKSHEHAGHDSSVNSVCWAP---H-------------DYGLILACGSSDGAISLLTYT 135 (316)
T ss_dssp CEEEEECCCSSCCCEEEECC---T-------------TTCSCEEEECSSSCEEEEEEC
T ss_pred eEEEEccCCCCceEEEEECC---C-------------CCCcEEEEEcCCCCEEEEecC
Confidence 111111 1111223443321 1 123458899999998887764
No 116
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=93.33 E-value=1.8 Score=38.96 Aligned_cols=108 Identities=16% Similarity=0.181 Sum_probs=63.4
Q ss_pred eEEEEeec--CceEEEEeeCCeEEEEEecCCC-cee--------c-CCCceEEEE--EeCC-CEEEEEEeCCeEEEEEEc
Q psy14552 78 KIVRCAVN--QRQIVIALQGGRLIYFEMHPVS-DKK--------E-SDKKKIVRC--AVNQ-RQIVIALQGGRLIYFEMH 142 (290)
Q Consensus 78 ~Iv~as~n--~~qv~ial~~g~i~~~~~~~~~-~~~--------~-~~~~~Ii~a--s~~~-~~l~Val~~~~i~~l~l~ 142 (290)
.|.+++.+ ..+++.+ .+|.|....+.... .+. . .....+.++ +.++ ..++.|..|+.|+++.+.
T Consensus 179 ~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~ 257 (447)
T 3dw8_B 179 HINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMR 257 (447)
T ss_dssp CCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETT
T ss_pred ceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECc
Confidence 34444443 4555555 78888877665211 111 1 111224333 3444 668888889999999887
Q ss_pred CCCCCc-eeeeeeeecC-------------cceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCC
Q psy14552 143 PETGIL-DECSETIQME-------------SEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAP 195 (290)
Q Consensus 143 ~~~~~l-~~~~~~~~l~-------------~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~ 195 (290)
. +.. .........+ ..|.++++.+. ..+|++|.. |.+.+|.+..
T Consensus 258 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~------g~~l~~~~~-~~v~iwd~~~ 315 (447)
T 3dw8_B 258 A--SALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHS------GRYMMTRDY-LSVKVWDLNM 315 (447)
T ss_dssp T--CSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTT------SSEEEEEES-SEEEEEETTC
T ss_pred C--CccccceeeEeccCCCccccccccccCceEEEEEECCC------CCEEEEeeC-CeEEEEeCCC
Confidence 5 221 0001122222 27888888752 468888888 9999999864
No 117
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=93.32 E-value=4 Score=39.88 Aligned_cols=96 Identities=16% Similarity=0.232 Sum_probs=58.9
Q ss_pred eEEEEeeCCeEEEEEecCCCc-e-----ecCCC-ceEEEE--EeCCCEEEEEEeCCeEEEEEEcCCCCCceeeeeee-ec
Q psy14552 88 QIVIALQGGRLIYFEMHPVSD-K-----KESDK-KKIVRC--AVNQRQIVIALQGGRLIYFEMHPETGILDECSETI-QM 157 (290)
Q Consensus 88 qv~ial~~g~i~~~~~~~~~~-~-----~~~~~-~~Ii~a--s~~~~~l~Val~~~~i~~l~l~~~~~~l~~~~~~~-~l 157 (290)
.++-+-.+|.|....+..... + ....+ ..+.++ +.++..++.|.+|++|++..+.. +.. .... .-
T Consensus 397 ~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~--~~~---~~~~~~h 471 (694)
T 3dm0_A 397 IIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAA--GVS---TRRFVGH 471 (694)
T ss_dssp EEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT--TEE---EEEEECC
T ss_pred EEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCC--Ccc---eeEEeCC
Confidence 445555667777776643211 0 00111 123222 44566788888899999998865 321 1122 23
Q ss_pred CcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeC
Q psy14552 158 ESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLA 194 (290)
Q Consensus 158 ~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~ 194 (290)
...|.++++.+. ..+|+.|..||+|.+|.+.
T Consensus 472 ~~~v~~~~~s~~------~~~l~s~s~D~~i~iwd~~ 502 (694)
T 3dm0_A 472 TKDVLSVAFSLD------NRQIVSASRDRTIKLWNTL 502 (694)
T ss_dssp SSCEEEEEECTT------SSCEEEEETTSCEEEECTT
T ss_pred CCCEEEEEEeCC------CCEEEEEeCCCEEEEEECC
Confidence 567888888643 4678999999999999864
No 118
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=93.24 E-value=3.7 Score=35.34 Aligned_cols=160 Identities=9% Similarity=0.029 Sum_probs=90.4
Q ss_pred ceEEEEeec----CceEEEEeeCCeEEEEEecCCCceec----CCCceEEEEE--eC-------------CCEEEEEEeC
Q psy14552 77 KKIVRCAVN----QRQIVIALQGGRLIYFEMHPVSDKKE----SDKKKIVRCA--VN-------------QRQIVIALQG 133 (290)
Q Consensus 77 ~~Iv~as~n----~~qv~ial~~g~i~~~~~~~~~~~~~----~~~~~Ii~as--~~-------------~~~l~Val~~ 133 (290)
..|.+++.+ ..+++.+..+|.|..+.+.....+.. .....+.+++ .+ +..++.|..|
T Consensus 100 ~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D 179 (297)
T 2pm7_B 100 ASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGAD 179 (297)
T ss_dssp SCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETT
T ss_pred CceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCC
Confidence 346666655 35788888889988887754322211 1111232222 21 2458888889
Q ss_pred CeEEEEEEcCCCCCceeeeeeee-cCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEec--CCc
Q psy14552 134 GRLIYFEMHPETGILDECSETIQ-MESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGL--PDL 210 (290)
Q Consensus 134 ~~i~~l~l~~~~~~l~~~~~~~~-l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L--~~~ 210 (290)
++|+++.+... .........+. -...|.++++.+.. ....+|+.|..||++.+|.++..... .....+ ...
T Consensus 180 ~~v~lwd~~~~-~~~~~~~~~l~~H~~~V~~v~~sp~~---~~~~~las~s~D~~v~iWd~~~~~~~--~~~~~~~~~~~ 253 (297)
T 2pm7_B 180 NLVKIWKYNSD-AQTYVLESTLEGHSDWVRDVAWSPTV---LLRSYMASVSQDRTCIIWTQDNEQGP--WKKTLLKEEKF 253 (297)
T ss_dssp SCEEEEEEETT-TTEEEEEEEECCCSSCEEEEEECCCC---SSSEEEEEEETTSCEEEEEESSTTSC--CEEEESSSSCC
T ss_pred CcEEEEEEcCC-CceEEEEEEecCCCCceEEEEECCCC---CCceEEEEEECCCcEEEEEeCCCCCc--cceeeeecccC
Confidence 99999988752 11111111121 24568888886531 11468999999999999998643210 011112 122
Q ss_pred ceEEEEEEecCCCCCCCCCCCCCccCCceEEEEEecCceEEEEEEeC
Q psy14552 211 AESLVMIEMGASDPTSSDEPAGPVTLGNLYLYVGLQNGALLRMVVDQ 257 (290)
Q Consensus 211 p~Sl~~~~~~~~~~~~~~~~~~~~~~~~~~L~iGl~dG~l~~~~~d~ 257 (290)
+..+.-+.+.. . ..+|..|-.||.+.-+..+.
T Consensus 254 ~~~v~~~~~s~--------------~-g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 254 PDVLWRASWSL--------------S-GNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp SSCEEEEEECS--------------S-SCCEEEEETTSCEEEEEECT
T ss_pred CCcEEEEEECC--------------C-CCEEEEEcCCCcEEEEEECC
Confidence 33343344421 1 23588899999998887653
No 119
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=92.35 E-value=5.2 Score=34.81 Aligned_cols=120 Identities=15% Similarity=0.210 Sum_probs=71.3
Q ss_pred EEEEeCCCEEEEEE-eCCeEEEEEEcCCCCCceeeeeeeecC----------cceeEEEeeeCCCCCccccEEEEEeCCC
Q psy14552 118 VRCAVNQRQIVIAL-QGGRLIYFEMHPETGILDECSETIQME----------SEVLCMALSNAPSGEQMSRFLAVGLADN 186 (290)
Q Consensus 118 i~as~~~~~l~Val-~~~~i~~l~l~~~~~~l~~~~~~~~l~----------~ei~~l~i~~~~~~~~~~~~l~VGl~dg 186 (290)
++.+.++..++++. .++.+.++.++. .+.+..+ ...... ..+.++.+.+. + . .++.+..++
T Consensus 91 ~a~spdg~~l~~~~~~~~~v~v~~~~~-~g~~~~~-~~~~~~~~~p~~~~~~~~~~~~~~spd--g---~-l~v~~~~~~ 162 (347)
T 3hfq_A 91 VAVDEARQLVYSANYHKGTAEVMKIAA-DGALTLT-DTVQHSGHGPRPEQDGSHIHYTDLTPD--N---R-LAVIDLGSD 162 (347)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEECT-TSCEEEE-EEEECCCCCSSTTCSSCCEEEEEECTT--S---C-EEEEETTTT
T ss_pred EEECCCCCEEEEEeCCCCEEEEEEeCC-CCCeeec-ceeecCCCCCCccccCCCceEEEECCC--C---c-EEEEeCCCC
Confidence 44466777788887 478899999875 2544332 222211 13666777542 2 3 444555689
Q ss_pred eEEEEEeCCCCceeEeeEEec--CCcceEEEEEEecCCCCCCCCCCCCCccCCceEEEEEecCceEEEEEEeCCCCcc
Q psy14552 187 TVRLISLAPQDCLKQKNLQGL--PDLAESLVMIEMGASDPTSSDEPAGPVTLGNLYLYVGLQNGALLRMVVDQTSGDL 262 (290)
Q Consensus 187 ~v~i~~l~~~~~l~~~~~~~L--~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~~~~~L~iGl~dG~l~~~~~d~~~~~l 262 (290)
.+.+|.+++...+........ +.-|+.+.+.. +++..++.+..+|.+..|.++..++.+
T Consensus 163 ~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~sp-----------------dg~~l~v~~~~~~~v~v~~~~~~~g~~ 223 (347)
T 3hfq_A 163 KVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSP-----------------DGQYAFLAGELSSQIASLKYDTQTGAF 223 (347)
T ss_dssp EEEEEEECTTSCEEEEEEEECCTTCCEEEEEECT-----------------TSSEEEEEETTTTEEEEEEEETTTTEE
T ss_pred EEEEEEECCCCcEEEeeeEEcCCCCCCceEEECC-----------------CCCEEEEEeCCCCEEEEEEecCCCCce
Confidence 999999975444554433332 34577654432 344323346788888888888766654
No 120
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=92.03 E-value=5.4 Score=34.27 Aligned_cols=104 Identities=10% Similarity=0.140 Sum_probs=62.3
Q ss_pred CceEEEEeeCCeEEEEEecCCC-ce--ecCCC-ceEEEEEe----CCCEEEEEEeCCeEEEEEEcCCCCCceeeeeeee-
Q psy14552 86 QRQIVIALQGGRLIYFEMHPVS-DK--KESDK-KKIVRCAV----NQRQIVIALQGGRLIYFEMHPETGILDECSETIQ- 156 (290)
Q Consensus 86 ~~qv~ial~~g~i~~~~~~~~~-~~--~~~~~-~~Ii~as~----~~~~l~Val~~~~i~~l~l~~~~~~l~~~~~~~~- 156 (290)
..+++.+-.+|.|..+.++... .. ....+ ..+.+.+- ++..++-|..|++|++..+.. +..... ....
T Consensus 21 g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~--~~~~~~-~~~~~ 97 (297)
T 2pm7_B 21 GKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEEN--GRWSQI-AVHAV 97 (297)
T ss_dssp SSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSS--SCBCCC-EEECC
T ss_pred CCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCC--CceEEE-EEeec
Confidence 4566666677888777764211 11 11112 22333332 245677777899999998864 222121 1121
Q ss_pred cCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCC
Q psy14552 157 MESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQ 196 (290)
Q Consensus 157 l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~ 196 (290)
-...|.++++.+.. ...+|++|..||.+.+|.+...
T Consensus 98 h~~~v~~v~~~p~~----~g~~l~s~s~d~~v~~wd~~~~ 133 (297)
T 2pm7_B 98 HSASVNSVQWAPHE----YGPMLLVASSDGKVSVVEFKEN 133 (297)
T ss_dssp CSSCEEEEEECCGG----GCSEEEEEETTSEEEEEEBCSS
T ss_pred CCCceeEEEeCcCC----CCcEEEEEECCCcEEEEEecCC
Confidence 34578888886532 2468999999999999998643
No 121
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=91.97 E-value=6.9 Score=35.38 Aligned_cols=138 Identities=7% Similarity=0.066 Sum_probs=77.8
Q ss_pred CceEEEEeeCCeEEEEEecCCCc---eecCCC-ceEEEE--EeCCCEEEEEEeCCeEEEEEEcCCCCCceeeeeeee-cC
Q psy14552 86 QRQIVIALQGGRLIYFEMHPVSD---KKESDK-KKIVRC--AVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQ-ME 158 (290)
Q Consensus 86 ~~qv~ial~~g~i~~~~~~~~~~---~~~~~~-~~Ii~a--s~~~~~l~Val~~~~i~~l~l~~~~~~l~~~~~~~~-l~ 158 (290)
++.+++++ ++.|.......... +....+ ..|.+. +.++..+++|..|++|++..+.. +.. ..... -.
T Consensus 116 ~n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~--~~~---~~~~~~h~ 189 (420)
T 4gga_A 116 GNVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQ--QKR---LRNMTSHS 189 (420)
T ss_dssp TSEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTT--TEE---EEEECCCS
T ss_pred CCEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCC--CcE---EEEEeCCC
Confidence 45777776 77777665542211 111122 224333 45677899999999999998765 321 11221 24
Q ss_pred cceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEecCCcceEEEEEEecCCCCCCCCCCCCCccCCc
Q psy14552 159 SEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAGPVTLGN 238 (290)
Q Consensus 159 ~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~~~ 238 (290)
..+.+++.. ..+++.|..|+.+.++....... .+. .+..-...+....+. ...
T Consensus 190 ~~v~~~s~~--------~~~l~sgs~d~~i~~~d~~~~~~--~~~--~~~~h~~~~~~~~~~---------------~~g 242 (420)
T 4gga_A 190 ARVGSLSWN--------SYILSSGSRSGHIHHHDVRVAEH--HVA--TLSGHSQEVCGLRWA---------------PDG 242 (420)
T ss_dssp SCEEEEEEE--------TTEEEEEETTSEEEEEETTSSSC--EEE--EEECCSSCEEEEEEC---------------TTS
T ss_pred CceEEEeeC--------CCEEEEEeCCCceeEeeecccce--eeE--Eecccccceeeeeec---------------CCC
Confidence 456666542 46899999999999998653221 111 111111122222221 223
Q ss_pred eEEEEEecCceEEEEEEe
Q psy14552 239 LYLYVGLQNGALLRMVVD 256 (290)
Q Consensus 239 ~~L~iGl~dG~l~~~~~d 256 (290)
.+|..|-.||.+.-+...
T Consensus 243 ~~l~s~~~D~~v~i~~~~ 260 (420)
T 4gga_A 243 RHLASGGNDNLVNVWPSA 260 (420)
T ss_dssp SEEEEEETTSCEEEEESS
T ss_pred CeeeeeeccccceEEeec
Confidence 468889999988777653
No 122
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=91.51 E-value=6.1 Score=33.87 Aligned_cols=107 Identities=11% Similarity=0.071 Sum_probs=60.5
Q ss_pred EeCCCEEEEEEeC-C--eEEEEEEcCCCCCceeeeeeeecCcceeEEEeeeCCCCCccccEEEEE-eCCCe-EEEEEeCC
Q psy14552 121 AVNQRQIVIALQG-G--RLIYFEMHPETGILDECSETIQMESEVLCMALSNAPSGEQMSRFLAVG-LADNT-VRLISLAP 195 (290)
Q Consensus 121 s~~~~~l~Val~~-~--~i~~l~l~~~~~~l~~~~~~~~l~~ei~~l~i~~~~~~~~~~~~l~VG-l~dg~-v~i~~l~~ 195 (290)
+.++..++++..+ + .|.++.++. +. ..........+..+.+.+. ..+++++ ..++. +.+|.++.
T Consensus 92 s~dg~~l~~~~~~~~~~~i~v~d~~~--~~---~~~~~~~~~~~~~~~~spd------g~~l~~~~~~~~~~i~~~~~~~ 160 (331)
T 3u4y_A 92 TPDDQFAVTVTGLNHPFNMQSYSFLK--NK---FISTIPIPYDAVGIAISPN------GNGLILIDRSSANTVRRFKIDA 160 (331)
T ss_dssp CTTSSEEEECCCSSSSCEEEEEETTT--TE---EEEEEECCTTEEEEEECTT------SSCEEEEEETTTTEEEEEEECT
T ss_pred CCCCCEEEEecCCCCcccEEEEECCC--CC---eEEEEECCCCccceEECCC------CCEEEEEecCCCceEEEEEECC
Confidence 5556666644334 3 788887654 32 2234455667777887643 2345555 45677 99999986
Q ss_pred CCceeEeeEE--ecCCcceEEEEEEecCCCCCCCCCCCCCccCCceEEEEEecCceEEEEEE
Q psy14552 196 QDCLKQKNLQ--GLPDLAESLVMIEMGASDPTSSDEPAGPVTLGNLYLYVGLQNGALLRMVV 255 (290)
Q Consensus 196 ~~~l~~~~~~--~L~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~~~~~L~iGl~dG~l~~~~~ 255 (290)
...+...... ..+..|+.+.+.. ++...+..+..+|.+..|.+
T Consensus 161 ~g~~~~~~~~~~~~~~~~~~~~~sp-----------------dg~~l~v~~~~~~~v~v~d~ 205 (331)
T 3u4y_A 161 DGVLFDTGQEFISGGTRPFNITFTP-----------------DGNFAFVANLIGNSIGILET 205 (331)
T ss_dssp TCCEEEEEEEEECSSSSEEEEEECT-----------------TSSEEEEEETTTTEEEEEEC
T ss_pred CCcEeecCCccccCCCCccceEECC-----------------CCCEEEEEeCCCCeEEEEEC
Confidence 5544443222 2334566665432 33432344456787776754
No 123
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=91.46 E-value=6.8 Score=34.27 Aligned_cols=156 Identities=11% Similarity=0.088 Sum_probs=88.6
Q ss_pred ceEEEEeec----CceEEEEeeCCeEEEEEecCCCcee---cCCCceEEEE--EeCCCEEEEEEeCCeEEEEEEcCCCCC
Q psy14552 77 KKIVRCAVN----QRQIVIALQGGRLIYFEMHPVSDKK---ESDKKKIVRC--AVNQRQIVIALQGGRLIYFEMHPETGI 147 (290)
Q Consensus 77 ~~Iv~as~n----~~qv~ial~~g~i~~~~~~~~~~~~---~~~~~~Ii~a--s~~~~~l~Val~~~~i~~l~l~~~~~~ 147 (290)
.+|.+++.+ +.+++.+..+|.|.++.+....... ......+.++ +.++..++.|..|+.|+++.+.. +.
T Consensus 126 ~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~--~~ 203 (343)
T 3lrv_A 126 NEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSS--PD 203 (343)
T ss_dssp SCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSC--TT
T ss_pred CCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCC--CC
Confidence 456666554 4567777788999888876433221 1112223232 45566788888899999998875 22
Q ss_pred ceeeeeeeec--CcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEecCCcceEEEEEEecCCCCC
Q psy14552 148 LDECSETIQM--ESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPT 225 (290)
Q Consensus 148 l~~~~~~~~l--~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~~~~~~~~~~ 225 (290)
.. ...... ...|.++++.+. ..+|+.|. |+.|.+|.+.....+..+........+..-..+.+.
T Consensus 204 ~~--~~~~~~~h~~~v~~l~fs~~------g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 269 (343)
T 3lrv_A 204 QA--SSRFPVDEEAKIKEVKFADN------GYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDID----- 269 (343)
T ss_dssp SC--CEECCCCTTSCEEEEEECTT------SSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEEC-----
T ss_pred CC--ccEEeccCCCCEEEEEEeCC------CCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEEC-----
Confidence 21 012222 568889988642 46888888 559999998654332221110001111110112221
Q ss_pred CCCCCCCCccCCceEEEEEec-CceEEEEEEeCC
Q psy14552 226 SSDEPAGPVTLGNLYLYVGLQ-NGALLRMVVDQT 258 (290)
Q Consensus 226 ~~~~~~~~~~~~~~~L~iGl~-dG~l~~~~~d~~ 258 (290)
....+|.+|.. ||.+.-|.++..
T Consensus 270 ----------~~g~~l~~~s~~d~~i~v~~~~~~ 293 (343)
T 3lrv_A 270 ----------DSGKNMIAYSNESNSLTIYKFDKK 293 (343)
T ss_dssp ----------TTSSEEEEEETTTTEEEEEEECTT
T ss_pred ----------CCCCEEEEecCCCCcEEEEEEccc
Confidence 22346888888 998888887543
No 124
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=91.41 E-value=7 Score=34.38 Aligned_cols=146 Identities=8% Similarity=0.058 Sum_probs=77.4
Q ss_pred eEEEEeec--CceEEEEee-CCeEEEEEecCCCce-ecCCCceE--EEEEeCCCEEEEEEe-CCeEEEEEEcCCCCCcee
Q psy14552 78 KIVRCAVN--QRQIVIALQ-GGRLIYFEMHPVSDK-KESDKKKI--VRCAVNQRQIVIALQ-GGRLIYFEMHPETGILDE 150 (290)
Q Consensus 78 ~Iv~as~n--~~qv~ial~-~g~i~~~~~~~~~~~-~~~~~~~I--i~as~~~~~l~Val~-~~~i~~l~l~~~~~~l~~ 150 (290)
.+..++.. +++++++.. ++.|..+.+...... ....+..+ ++.+.++..++++.+ ++.|+++.+.. +..
T Consensus 75 ~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~--~~~-- 150 (391)
T 1l0q_A 75 SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVT--KAV-- 150 (391)
T ss_dssp SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTT--TEE--
T ss_pred CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCC--CcE--
Confidence 44444444 455655553 367776655422111 11122223 222455666755554 78899887754 322
Q ss_pred eeeeeecCcceeEEEeeeCCCCCccccEE-EEEeCCCeEEEEEeCCCCceeEeeEEecCCcceEEEEEEecCCCCCCCCC
Q psy14552 151 CSETIQMESEVLCMALSNAPSGEQMSRFL-AVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDE 229 (290)
Q Consensus 151 ~~~~~~l~~ei~~l~i~~~~~~~~~~~~l-~VGl~dg~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~~~~~~~~~~~~~~ 229 (290)
.........+.++.+.+. ..++ +.+..+|.+.+|.+... +..........|.++.+..
T Consensus 151 -~~~~~~~~~~~~~~~~~d------g~~l~~~~~~~~~v~~~d~~~~---~~~~~~~~~~~~~~~~~~~----------- 209 (391)
T 1l0q_A 151 -INTVSVGRSPKGIAVTPD------GTKVYVANFDSMSISVIDTVTN---SVIDTVKVEAAPSGIAVNP----------- 209 (391)
T ss_dssp -EEEEECCSSEEEEEECTT------SSEEEEEETTTTEEEEEETTTT---EEEEEEECSSEEEEEEECT-----------
T ss_pred -EEEEecCCCcceEEECCC------CCEEEEEeCCCCEEEEEECCCC---eEEEEEecCCCccceEECC-----------
Confidence 233455667777777642 3455 45566999999998643 2222223344455543321
Q ss_pred CCCCccCCceEEEEEe---cCceEEEEEE
Q psy14552 230 PAGPVTLGNLYLYVGL---QNGALLRMVV 255 (290)
Q Consensus 230 ~~~~~~~~~~~L~iGl---~dG~l~~~~~ 255 (290)
.+ .+|+++- .+|.+..|.+
T Consensus 210 ------~g-~~l~~~~~~~~~~~v~~~d~ 231 (391)
T 1l0q_A 210 ------EG-TKAYVTNVDKYFNTVSMIDT 231 (391)
T ss_dssp ------TS-SEEEEEEECSSCCEEEEEET
T ss_pred ------CC-CEEEEEecCcCCCcEEEEEC
Confidence 22 3466666 6788876643
No 125
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=91.35 E-value=9.1 Score=35.57 Aligned_cols=96 Identities=18% Similarity=0.218 Sum_probs=57.2
Q ss_pred CCCEEEEEEeCCeEEEEEEcCCCCCceeeeeeeecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEe
Q psy14552 123 NQRQIVIALQGGRLIYFEMHPETGILDECSETIQMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQK 202 (290)
Q Consensus 123 ~~~~l~Val~~~~i~~l~l~~~~~~l~~~~~~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~ 202 (290)
++..++|+ .++.|+++++... .+......+...+. ++.+. .+.+++++.||.|.+|.+.... +..
T Consensus 96 d~~~L~v~-~~~~l~v~dv~sl----~~~~~~~~~~~~v~--~i~~~------~p~~av~~~dG~L~v~dl~~~~-~~~- 160 (388)
T 1xip_A 96 HGDQVLVS-TRNALYSLDLEEL----SEFRTVTSFEKPVF--QLKNV------NNTLVILNSVNDLSALDLRTKS-TKQ- 160 (388)
T ss_dssp ETTEEEEE-ESSEEEEEESSST----TCEEEEEECSSCEE--EEEEC------SSEEEEEETTSEEEEEETTTCC-EEE-
T ss_pred CCCEEEEE-cCCcEEEEEchhh----hccCccceeeccee--eEEec------CCCEEEEECCCCEEEEEccCCc-ccc-
Confidence 77788888 8889999998752 22211122333343 33322 1238888999999999997433 222
Q ss_pred eEEecCCcceEEEEEEecCCCCCCCCCCCCCccCCceEEEEEecCceEEEEEEeC
Q psy14552 203 NLQGLPDLAESLVMIEMGASDPTSSDEPAGPVTLGNLYLYVGLQNGALLRMVVDQ 257 (290)
Q Consensus 203 ~~~~L~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~~~~~L~iGl~dG~l~~~~~d~ 257 (290)
+....++++-.. .+ +.+|.+||.+.-|..+.
T Consensus 161 ----~~~~Vs~v~WSp-----------------kG---~~vg~~dg~i~~~~~~~ 191 (388)
T 1xip_A 161 ----LAQNVTSFDVTN-----------------SQ---LAVLLKDRSFQSFAWRN 191 (388)
T ss_dssp ----EEESEEEEEECS-----------------SE---EEEEETTSCEEEEEEET
T ss_pred ----ccCCceEEEEcC-----------------Cc---eEEEEcCCcEEEEcCCC
Confidence 112223333321 22 67899999998886543
No 126
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=91.21 E-value=6.9 Score=33.94 Aligned_cols=158 Identities=9% Similarity=-0.005 Sum_probs=84.8
Q ss_pred eEEEEeec----CceEEEEeeCCeEEEEEecCCCceec----CCC-ceE--EEEEeC-----------------CCEEEE
Q psy14552 78 KIVRCAVN----QRQIVIALQGGRLIYFEMHPVSDKKE----SDK-KKI--VRCAVN-----------------QRQIVI 129 (290)
Q Consensus 78 ~Iv~as~n----~~qv~ial~~g~i~~~~~~~~~~~~~----~~~-~~I--i~as~~-----------------~~~l~V 129 (290)
.|.+++.+ ..+++.+-.+|.|....+.....|.. ..+ ..+ ++-+.+ +..++.
T Consensus 105 ~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 184 (316)
T 3bg1_A 105 SVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFAS 184 (316)
T ss_dssp CCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEEC
T ss_pred ceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEE
Confidence 35555554 23667777788888777654434422 011 111 111111 234677
Q ss_pred EEeCCeEEEEEEcCCCCCceeeeeeee-cCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCC--ceeEeeEEe
Q psy14552 130 ALQGGRLIYFEMHPETGILDECSETIQ-MESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQD--CLKQKNLQG 206 (290)
Q Consensus 130 al~~~~i~~l~l~~~~~~l~~~~~~~~-l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~--~l~~~~~~~ 206 (290)
|..|+.|++..+... +..... ..+. -...|.++++.+.. .....+|+.|..||+|.+|.++... .........
T Consensus 185 gs~D~~v~lWd~~~~-~~~~~~-~~l~~h~~~V~~v~~sp~~--~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~ 260 (316)
T 3bg1_A 185 GGCDNLIKLWKEEED-GQWKEE-QKLEAHSDWVRDVAWAPSI--GLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHK 260 (316)
T ss_dssp CBTTSBCCEEEECTT-SCEEEE-ECCBCCSSCEEEEECCCCS--SCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEE
T ss_pred ecCCCeEEEEEeCCC-Ccccee-eecccCCCceEEEEecCCC--CCCCceEEEEcCCCeEEEEEccCccccchhhhhhhc
Confidence 767999999988641 222111 1121 24568888886532 1123689999999999999986411 100000011
Q ss_pred cCCcceEEEEEEecCCCCCCCCCCCCCccCCceEEEEEecCceEEEEEEeC
Q psy14552 207 LPDLAESLVMIEMGASDPTSSDEPAGPVTLGNLYLYVGLQNGALLRMVVDQ 257 (290)
Q Consensus 207 L~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~~~~~L~iGl~dG~l~~~~~d~ 257 (290)
.. ..+.-+.+.. ...+|..|-.||.+.-+..+.
T Consensus 261 ~~---~~v~~v~~sp---------------~g~~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 261 FN---DVVWHVSWSI---------------TANILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp CS---SCEEEEEECT---------------TTCCEEEEESSSCEEEEEECT
T ss_pred CC---CcEEEEEEcC---------------CCCEEEEEcCCCeEEEEEECC
Confidence 11 2233333321 123588899999998887653
No 127
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=91.11 E-value=4.3 Score=37.83 Aligned_cols=130 Identities=15% Similarity=0.163 Sum_probs=78.5
Q ss_pred CCeEEEEecCCeEEEeecCcc---------eee-eccCCCCCceEEEEeecCceEEEEeeCCeEEEEEecCCCc-eec-C
Q psy14552 45 DNSIVQVYPDGIRHIGAKNTT---------WKV-SDKKESDKKKIVRCAVNQRQIVIALQGGRLIYFEMHPVSD-KKE-S 112 (290)
Q Consensus 45 ~~~ivQVt~~~v~l~~~~~~~---------~~~-~~~~~~~~~~Iv~as~n~~qv~ial~~g~i~~~~~~~~~~-~~~-~ 112 (290)
.|.++--.++++++.+.+.-. +.- ..++.|. |...+.++.+++++ .+|.|.++.+....+ ... .
T Consensus 49 ~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~---V~~l~fd~~~L~v~-~~~~l~v~dv~sl~~~~~~~~ 124 (388)
T 1xip_A 49 KSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKEIPD---VIFVCFHGDQVLVS-TRNALYSLDLEELSEFRTVTS 124 (388)
T ss_dssp TTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEECTT---EEEEEEETTEEEEE-ESSEEEEEESSSTTCEEEEEE
T ss_pred CCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEeeCCC---eeEEEECCCEEEEE-cCCcEEEEEchhhhccCccce
Confidence 355666667777765533111 110 1122232 66666666777777 899999988754332 111 1
Q ss_pred CCceEEEEEeCCCEEEEEEeCCeEEEEEEcCCCCCceeeeeeeecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEE
Q psy14552 113 DKKKIVRCAVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLIS 192 (290)
Q Consensus 113 ~~~~Ii~as~~~~~l~Val~~~~i~~l~l~~~~~~l~~~~~~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~ 192 (290)
-...+.........+++++.|++|.++.+.. +.+. .+...++|++..+. + +++|..||.+..|.
T Consensus 125 ~~~~v~~i~~~~p~~av~~~dG~L~v~dl~~--~~~~------~~~~~Vs~v~WSpk-----G---~~vg~~dg~i~~~~ 188 (388)
T 1xip_A 125 FEKPVFQLKNVNNTLVILNSVNDLSALDLRT--KSTK------QLAQNVTSFDVTNS-----Q---LAVLLKDRSFQSFA 188 (388)
T ss_dssp CSSCEEEEEECSSEEEEEETTSEEEEEETTT--CCEE------EEEESEEEEEECSS-----E---EEEEETTSCEEEEE
T ss_pred eecceeeEEecCCCEEEEECCCCEEEEEccC--Cccc------cccCCceEEEEcCC-----c---eEEEEcCCcEEEEc
Confidence 1122332233333488888899999999875 3321 13457999999743 2 78999999999997
Q ss_pred eC
Q psy14552 193 LA 194 (290)
Q Consensus 193 l~ 194 (290)
.+
T Consensus 189 ~~ 190 (388)
T 1xip_A 189 WR 190 (388)
T ss_dssp EE
T ss_pred CC
Confidence 65
No 128
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=90.62 E-value=9.4 Score=34.45 Aligned_cols=115 Identities=15% Similarity=0.172 Sum_probs=66.7
Q ss_pred CceEEEEeecCceEEEEeeCCeEEEEEecCCCceec--CCC-ceE--EEEEeCCCEEEEEEeCCeEEEEEEcCCCCCcee
Q psy14552 76 KKKIVRCAVNQRQIVIALQGGRLIYFEMHPVSDKKE--SDK-KKI--VRCAVNQRQIVIALQGGRLIYFEMHPETGILDE 150 (290)
Q Consensus 76 ~~~Iv~as~n~~qv~ial~~g~i~~~~~~~~~~~~~--~~~-~~I--i~as~~~~~l~Val~~~~i~~l~l~~~~~~l~~ 150 (290)
...+.+.+.+...++.+-.++.+............. ..+ ..+ +....++..++.+..|+.+++............
T Consensus 189 ~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~ 268 (420)
T 4gga_A 189 SARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVP 268 (420)
T ss_dssp SSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCC
T ss_pred CCceEEEeeCCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeecccccccee
Confidence 345777778888887777788887665432221111 111 112 112345667888878999999877642111111
Q ss_pred eeeeeecCcceeEEEeeeCCCCCccccEEEEEe--CCCeEEEEEeCC
Q psy14552 151 CSETIQMESEVLCMALSNAPSGEQMSRFLAVGL--ADNTVRLISLAP 195 (290)
Q Consensus 151 ~~~~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl--~dg~v~i~~l~~ 195 (290)
..........|.++.+.+.. ...+++|. .|+.|.+|.+..
T Consensus 269 ~~~~~~~~~~V~~~~~~p~~-----~~~la~~~gs~D~~I~iwd~~t 310 (420)
T 4gga_A 269 LQTFTQHQGAVKAVAWCPWQ-----SNVLATGGGTSDRHIRIWNVCS 310 (420)
T ss_dssp SEEECCCSSCEEEEEECTTC-----TTEEEEEECTTTCEEEEEETTT
T ss_pred eeeecccCCceeeeeeCCCc-----ccEEEEEeecCCCEEEEEeCCc
Confidence 11112345677888887543 45566554 599999999864
No 129
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=88.92 E-value=9.9 Score=32.23 Aligned_cols=85 Identities=18% Similarity=0.177 Sum_probs=47.7
Q ss_pred EEEEeCCCEEEEEEe-CCeEEEEEEcCCCCCceeeeeeeecCc------ceeEEEeeeCCCCCccccEEEEEe-------
Q psy14552 118 VRCAVNQRQIVIALQ-GGRLIYFEMHPETGILDECSETIQMES------EVLCMALSNAPSGEQMSRFLAVGL------- 183 (290)
Q Consensus 118 i~as~~~~~l~Val~-~~~i~~l~l~~~~~~l~~~~~~~~l~~------ei~~l~i~~~~~~~~~~~~l~VGl------- 183 (290)
++.+.++.+++++.. ++.|.++.+.. +.. ......+. .+..+.+.+. ..+++++.
T Consensus 39 ~~~s~dg~~l~v~~~~~~~v~~~d~~~--~~~---~~~~~~~~~~~~~~~~~~~~~s~d------g~~l~~~~~~~~~~~ 107 (337)
T 1pby_B 39 PMVAPGGRIAYATVNKSESLVKIDLVT--GET---LGRIDLSTPEERVKSLFGAALSPD------GKTLAIYESPVRLEL 107 (337)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEETTT--CCE---EEEEECCBTTEEEECTTCEEECTT------SSEEEEEEEEEEECS
T ss_pred eEEcCCCCEEEEEeCCCCeEEEEECCC--CCe---EeeEEcCCcccccccccceEECCC------CCEEEEEeccccccc
Confidence 333556667666654 57888877654 332 12333333 5556666532 35677775
Q ss_pred -----CCCeEEEEEeCCCCceeEeeEEecCCcceEEEE
Q psy14552 184 -----ADNTVRLISLAPQDCLKQKNLQGLPDLAESLVM 216 (290)
Q Consensus 184 -----~dg~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~ 216 (290)
.++.+.+|.++. .+.......+..|.++.+
T Consensus 108 ~~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~~~~~~ 142 (337)
T 1pby_B 108 THFEVQPTRVALYDAET---LSRRKAFEAPRQITMLAW 142 (337)
T ss_dssp SCEEECCCEEEEEETTT---TEEEEEEECCSSCCCEEE
T ss_pred ccccccCceEEEEECCC---CcEEEEEeCCCCcceeEE
Confidence 468999998753 223333344556666653
No 130
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=88.41 E-value=8.3 Score=38.07 Aligned_cols=110 Identities=14% Similarity=0.198 Sum_probs=69.5
Q ss_pred CceEEEEeec--CceEEEEeeCCeEEEEEecCCCceecCC------CceEEEE--EeCCCEEEEEEeCCeEEEEEEcCCC
Q psy14552 76 KKKIVRCAVN--QRQIVIALQGGRLIYFEMHPVSDKKESD------KKKIVRC--AVNQRQIVIALQGGRLIYFEMHPET 145 (290)
Q Consensus 76 ~~~Iv~as~n--~~qv~ial~~g~i~~~~~~~~~~~~~~~------~~~Ii~a--s~~~~~l~Val~~~~i~~l~l~~~~ 145 (290)
...|.+++-+ +.+++.+..+|++..+..+. .+...+ ...+-+. +.++..++.|..|++|+++.+..
T Consensus 85 ~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~-- 160 (588)
T 2j04_A 85 VCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLDSKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRK-- 160 (588)
T ss_dssp SCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECCCSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCC--
T ss_pred CCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeeccCCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCC--
Confidence 4456666555 66788888888887775211 111111 1234222 57778899999999999999875
Q ss_pred CCcee----eeeeeec-----CcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCC
Q psy14552 146 GILDE----CSETIQM-----ESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQD 197 (290)
Q Consensus 146 ~~l~~----~~~~~~l-----~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~ 197 (290)
+.+.+ .++++.. ...|.++++.+. . +++|..|+++++|.++...
T Consensus 161 ~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPd------g--Laass~D~tVrlWd~~~~~ 213 (588)
T 2j04_A 161 NSENTPEFYFESSIRLSDAGSKDWVTHIVWYED------V--LVAALSNNSVFSMTVSASS 213 (588)
T ss_dssp CTTTCCCCEEEEEEECSCTTCCCCEEEEEEETT------E--EEEEETTCCEEEECCCSSS
T ss_pred CccccccceeeeeeecccccccccEEEEEEcCC------c--EEEEeCCCeEEEEECCCCc
Confidence 33311 1122221 247888888742 2 7888889999999987543
No 131
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=88.00 E-value=14 Score=32.73 Aligned_cols=154 Identities=12% Similarity=0.083 Sum_probs=87.3
Q ss_pred ceEEEEeecCceEEEEeeCCeEEEEEecCC-CceecCCCceEEEEEeCCCEEEEE--EeCCeEEEEEEcCCCCCc-----
Q psy14552 77 KKIVRCAVNQRQIVIALQGGRLIYFEMHPV-SDKKESDKKKIVRCAVNQRQIVIA--LQGGRLIYFEMHPETGIL----- 148 (290)
Q Consensus 77 ~~Iv~as~n~~qv~ial~~g~i~~~~~~~~-~~~~~~~~~~Ii~as~~~~~l~Va--l~~~~i~~l~l~~~~~~l----- 148 (290)
..|..+..+...++++ .++.+..+.+... .....-.. ..-.++.....++++ ..++.|+++.+... ...
T Consensus 101 ~~v~~v~~~~~~~~~~-~~~~i~i~d~~~~~~~~~~~~~-~~~~~~~s~~~la~~sg~~~g~v~iwd~~~~-~~~~~~~~ 177 (355)
T 3vu4_A 101 APVKDLFLSREFIVVS-YGDVISVFKFGNPWKRITDDIR-FGGVCEFSNGLLVYSNEFNLGQIHITKLQSS-GSATTQDQ 177 (355)
T ss_dssp SCEEEEEECSSEEEEE-ETTEEEEEESSTTCCBSSCCEE-EEEEEEEETTEEEEEESSCTTCEEEEECCC----------
T ss_pred CceEEEEEcCCEEEEE-EcCEEEEEECCCCceeeEEecc-CCceEEEEccEEEEeCCCcCcEEEEEECCCC-Cccccccc
Confidence 3677778887777666 5777877766533 11111010 111122222566664 46889999887641 100
Q ss_pred -------eeeeeee-ecCcceeEEEeeeCCCCCccccEEEEEeCCCe-EEEEEeCCCCceeEeeEEecCCcceEEEEEEe
Q psy14552 149 -------DECSETI-QMESEVLCMALSNAPSGEQMSRFLAVGLADNT-VRLISLAPQDCLKQKNLQGLPDLAESLVMIEM 219 (290)
Q Consensus 149 -------~~~~~~~-~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~-v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~~~~ 219 (290)
....... .-...|.++++.+. ..+|+.|..||+ +.+|.+.....+.... -+.-+..+.-+.+
T Consensus 178 ~~~~~~~~p~~~~~~~h~~~v~~~~~s~~------g~~l~s~s~d~~~v~iwd~~~~~~~~~~~---~g~h~~~v~~~~~ 248 (355)
T 3vu4_A 178 GVQQKAILGKGVLIKAHTNPIKMVRLNRK------SDMVATCSQDGTIIRVFKTEDGVLVREFR---RGLDRADVVDMKW 248 (355)
T ss_dssp ---------CCEEECCCSSCEEEEEECTT------SSEEEEEETTCSEEEEEETTTCCEEEEEE---CTTCCSCEEEEEE
T ss_pred cccccccCcccEEEEccCCceEEEEECCC------CCEEEEEeCCCCEEEEEECCCCcEEEEEE---cCCCCCcEEEEEE
Confidence 0000111 23567899998752 479999999998 9999986433333321 1112223333333
Q ss_pred cCCCCCCCCCCCCCccCCceEEEEEecCceEEEEEEeC
Q psy14552 220 GASDPTSSDEPAGPVTLGNLYLYVGLQNGALLRMVVDQ 257 (290)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~L~iGl~dG~l~~~~~d~ 257 (290)
. ....+|..|-.||.+.-|.+..
T Consensus 249 s---------------~~~~~l~s~s~d~~v~iw~~~~ 271 (355)
T 3vu4_A 249 S---------------TDGSKLAVVSDKWTLHVFEIFN 271 (355)
T ss_dssp C---------------TTSCEEEEEETTCEEEEEESSC
T ss_pred C---------------CCCCEEEEEECCCEEEEEEccC
Confidence 2 1234699999999999888743
No 132
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=87.46 E-value=20 Score=34.23 Aligned_cols=72 Identities=11% Similarity=0.153 Sum_probs=47.0
Q ss_pred EEEEeCCCEEEEEEeCCeEEEEEEcCCCCCceeeeeeeecCcceeEEEeeeCCCCCccccEEEEEe-CCCeEEEEEeC
Q psy14552 118 VRCAVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQMESEVLCMALSNAPSGEQMSRFLAVGL-ADNTVRLISLA 194 (290)
Q Consensus 118 i~as~~~~~l~Val~~~~i~~l~l~~~~~~l~~~~~~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl-~dg~v~i~~l~ 194 (290)
++.+.++..++++..+++|.++.++..++. . ..++.....+-.+++.+... ....+|+++. ++++|.+|...
T Consensus 184 v~~spdg~~l~v~~~d~~V~v~D~~~~t~~--~-~~~i~~g~~p~~va~sp~~~--~dg~~l~v~~~~~~~v~v~D~~ 256 (543)
T 1nir_A 184 SRMSASGRYLLVIGRDARIDMIDLWAKEPT--K-VAEIKIGIEARSVESSKFKG--YEDRYTIAGAYWPPQFAIMDGE 256 (543)
T ss_dssp EEECTTSCEEEEEETTSEEEEEETTSSSCE--E-EEEEECCSEEEEEEECCSTT--CTTTEEEEEEEESSEEEEEETT
T ss_pred EEECCCCCEEEEECCCCeEEEEECcCCCCc--E-EEEEecCCCcceEEeCCCcC--CCCCEEEEEEccCCeEEEEecc
Confidence 333567788999888999999988421222 2 23455566777777764100 0146788887 59999999865
No 133
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=87.45 E-value=11 Score=34.00 Aligned_cols=108 Identities=13% Similarity=0.014 Sum_probs=65.4
Q ss_pred EEEEEEeCCeEEEEEEcCCCCCceeeeeee-e---cCcceeEEEeeeCCC--CCccccEEEEEeCCCeEEEEEeCCCCce
Q psy14552 126 QIVIALQGGRLIYFEMHPETGILDECSETI-Q---MESEVLCMALSNAPS--GEQMSRFLAVGLADNTVRLISLAPQDCL 199 (290)
Q Consensus 126 ~l~Val~~~~i~~l~l~~~~~~l~~~~~~~-~---l~~ei~~l~i~~~~~--~~~~~~~l~VGl~dg~v~i~~l~~~~~l 199 (290)
.++-|..|++|++..+.. +..... ... . -...|.++++.+... +.....+|+-|..|+++++|.+.....+
T Consensus 103 ~las~~~d~~v~lw~~~~--~~~~~~-~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~ 179 (393)
T 4gq1_A 103 FLACVCQDNTVRLIITKN--ETIITQ-HVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPI 179 (393)
T ss_dssp EEEEEETTSCEEEEEEET--TEEEEE-EEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEE
T ss_pred EEEEEeCCCcEEEEECCC--Ccccee-eeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCcee
Confidence 466677799999998775 221111 011 1 135688888875321 1123578999999999999998643222
Q ss_pred eEeeEEecCCcceEEEEEEecCCCCCCCCCCCCCccCCceEEEEEecCceEEEEEE
Q psy14552 200 KQKNLQGLPDLAESLVMIEMGASDPTSSDEPAGPVTLGNLYLYVGLQNGALLRMVV 255 (290)
Q Consensus 200 ~~~~~~~L~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~~~~~L~iGl~dG~l~~~~~ 255 (290)
...........++.... .+..+|..|-.||.+.-|.+
T Consensus 180 --~~~~~~~~~v~~v~~~p-----------------~~~~~l~~~~~d~~v~~wd~ 216 (393)
T 4gq1_A 180 --LAGYPLSSPGISVQFRP-----------------SNPNQLIVGERNGNIRIFDW 216 (393)
T ss_dssp --EEEEECSSCEEEEEEET-----------------TEEEEEEEEETTSEEEEEET
T ss_pred --eeecCCCCCcEEEEECC-----------------CCCceEEecCCCCEEEEEEC
Confidence 22223333444544331 23456999999999887754
No 134
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=86.67 E-value=14 Score=31.56 Aligned_cols=118 Identities=14% Similarity=0.163 Sum_probs=62.9
Q ss_pred cCceEEEEeeCCeEEEEEecCCC---ceec-C--CCceE--EEEEeCCCEEEEEEe-CCeEEEEEEcCCCCCceeeeeee
Q psy14552 85 NQRQIVIALQGGRLIYFEMHPVS---DKKE-S--DKKKI--VRCAVNQRQIVIALQ-GGRLIYFEMHPETGILDECSETI 155 (290)
Q Consensus 85 n~~qv~ial~~g~i~~~~~~~~~---~~~~-~--~~~~I--i~as~~~~~l~Val~-~~~i~~l~l~~~~~~l~~~~~~~ 155 (290)
...++.++..++++..+...... .+.. . ..... ++-+.++..+.++.. ++.|.++.+.. +.+ ....
T Consensus 195 dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~--~~~---~~~~ 269 (353)
T 3vgz_A 195 EGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRN--GNI---LAKV 269 (353)
T ss_dssp TTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTT--CCE---EEEE
T ss_pred CCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCC--CcE---EEEE
Confidence 34556666566666655443211 1111 0 01112 223566777777765 47888887654 332 2233
Q ss_pred ecCcceeEEEeeeCCCCCccccEEEEEeC-CCeEEEEEeCCCCceeEeeEEecCCcceEEEEE
Q psy14552 156 QMESEVLCMALSNAPSGEQMSRFLAVGLA-DNTVRLISLAPQDCLKQKNLQGLPDLAESLVMI 217 (290)
Q Consensus 156 ~l~~ei~~l~i~~~~~~~~~~~~l~VGl~-dg~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~~ 217 (290)
..+. ...+.+.+. ..+++++.+ ++.|.+|.+.. .+.+.....+..|.++.+.
T Consensus 270 ~~~~-~~~~~~s~d------g~~l~v~~~~~~~v~~~d~~~---~~~~~~~~~~~~~~~~~~s 322 (353)
T 3vgz_A 270 AAPE-SLAVLFNPA------RNEAYVTHRQAGKVSVIDAKS---YKVVKTFDTPTHPNSLALS 322 (353)
T ss_dssp ECSS-CCCEEEETT------TTEEEEEETTTTEEEEEETTT---TEEEEEEECCSEEEEEEEC
T ss_pred EcCC-CceEEECCC------CCEEEEEECCCCeEEEEECCC---CeEEEEEecCCCCCeEEEc
Confidence 4433 344556532 356777775 89999998753 2333334555667666544
No 135
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=85.21 E-value=5.4 Score=37.01 Aligned_cols=61 Identities=18% Similarity=0.256 Sum_probs=44.0
Q ss_pred CCEEEEEEeCCeEEEEEEcCCCCCceeeeeeeecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeC
Q psy14552 124 QRQIVIALQGGRLIYFEMHPETGILDECSETIQMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLA 194 (290)
Q Consensus 124 ~~~l~Val~~~~i~~l~l~~~~~~l~~~~~~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~ 194 (290)
+..++.+..|++|+++.+.. +. ...........+.++++.+. ..+|++|..||.|.+|.+.
T Consensus 162 ~~~las~s~Dg~v~iwD~~~--~~--~~~~~~~~~~~v~~v~wspd------g~~lasgs~dg~v~iwd~~ 222 (434)
T 2oit_A 162 PSMVAVCLADGSIAVLQVTE--TV--KVCATLPSTVAVTSVCWSPK------GKQLAVGKQNGTVVQYLPT 222 (434)
T ss_dssp TTEEEEEETTSCEEEEEESS--SE--EEEEEECGGGCEEEEEECTT------SSCEEEEETTSCEEEECTT
T ss_pred CCEEEEEECCCeEEEEEcCC--Cc--ceeeccCCCCceeEEEEcCC------CCEEEEEcCCCcEEEEccC
Confidence 45678788899999998875 21 11112223567899988643 4689999999999999865
No 136
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=85.02 E-value=24 Score=32.55 Aligned_cols=113 Identities=13% Similarity=0.180 Sum_probs=69.3
Q ss_pred EEEEEe----CCeEEEEEEcCCCCCceeeee---eeecC-cceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCC--C
Q psy14552 127 IVIALQ----GGRLIYFEMHPETGILDECSE---TIQME-SEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAP--Q 196 (290)
Q Consensus 127 l~Val~----~~~i~~l~l~~~~~~l~~~~~---~~~l~-~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~--~ 196 (290)
++++.. +++|.+|+++++++.|..+.. +...+ .++-=+++-..... +..|++|.-.+|.+..|.+.. .
T Consensus 88 la~as~R~~~~n~l~vf~iDp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~--g~~yafV~~k~G~~~q~~l~~~~~ 165 (355)
T 3amr_A 88 IAAASNRSEGKNTIEIYAIDGKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKT--GKYYAMVTGKEGEFEQYELKADKN 165 (355)
T ss_dssp EEEEEECSTTCCEEEEEEECTTTCCEEECSCTTSCEECCCSSCCCEEEEECTTT--CCEEEEEECSSSEEEEEEEEECTT
T ss_pred EEEEeCCCCCCCeEEEEEECCCCCceeeccccccCcCCCCCCeeEEEEEecCCC--CcEEEEEECCCCeEEEEEEEeCCC
Confidence 455543 478999999864445544311 01111 33433333211111 246899999999999988843 2
Q ss_pred C--ceeEeeEEecCCcceEEEEEEecCCCCCCCCCCCCCccCCceEEEEEecCceEEEEEEeCCC
Q psy14552 197 D--CLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAGPVTLGNLYLYVGLQNGALLRMVVDQTS 259 (290)
Q Consensus 197 ~--~l~~~~~~~L~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~~~~~L~iGl~dG~l~~~~~d~~~ 259 (290)
. .-+.+.+..++..|+.+.+-. ..-+||+|-.+--+.+|..++.+
T Consensus 166 g~~~~~lVR~f~lgsq~EgcvvDd------------------~~g~Lyv~eEd~GIw~~da~p~~ 212 (355)
T 3amr_A 166 GYISGKKVRAFKMNSQTEGMAADD------------------EYGRLYIAEEDEAIWKFSAEPDG 212 (355)
T ss_dssp SCEEEEEEEEEECSSCEEEEEEET------------------TTTEEEEEETTTEEEEEECSTTS
T ss_pred CcccceEEEEecCCCCcceEEEcC------------------CCCeEEEecccceEEEEeCCcCC
Confidence 2 234556677888998776652 33459999998778888776654
No 137
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=84.80 E-value=12 Score=36.85 Aligned_cols=69 Identities=13% Similarity=0.241 Sum_probs=48.1
Q ss_pred EEEE--EeCCCEEEEEEeCCeEEEEEEcCCCCCceeeeeeeec---CcceeEEEeeeCCCCCccccEEEEEeCCCeEEEE
Q psy14552 117 IVRC--AVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQM---ESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLI 191 (290)
Q Consensus 117 Ii~a--s~~~~~l~Val~~~~i~~l~l~~~~~~l~~~~~~~~l---~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~ 191 (290)
|.+| +.++..++++..|++++++..+ +.+.. +. ... .+++.++++.|. ..+|++|..||+|.+|
T Consensus 88 V~~vawSPdG~~LAs~s~dg~V~iwd~~---~~l~~-l~-~~~~~~~~sv~svafSPD------G~~LAsgs~DGtVkIW 156 (588)
T 2j04_A 88 PRVCKPSPIDDWMAVLSNNGNVSVFKDN---KMLTN-LD-SKGNLSSRTYHCFEWNPI------ESSIVVGNEDGELQFF 156 (588)
T ss_dssp EEEEEECSSSSCEEEEETTSCEEEEETT---EEEEE-CC-CSSCSTTTCEEEEEECSS------SSCEEEEETTSEEEEE
T ss_pred EEEEEECCCCCEEEEEeCCCcEEEEeCC---ceeee-cc-CCCccccccEEEEEEcCC------CCEEEEEcCCCEEEEE
Confidence 5444 5667779999899999998732 11111 11 111 235889999753 5799999999999999
Q ss_pred EeCCC
Q psy14552 192 SLAPQ 196 (290)
Q Consensus 192 ~l~~~ 196 (290)
.+...
T Consensus 157 d~~~~ 161 (588)
T 2j04_A 157 SIRKN 161 (588)
T ss_dssp ECCCC
T ss_pred ECCCC
Confidence 98754
No 138
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=84.44 E-value=26 Score=32.51 Aligned_cols=120 Identities=11% Similarity=0.054 Sum_probs=68.6
Q ss_pred CEEEEEEeCCeEEEEEEcCCCCCceeeeeeee-----------cCcceeEEEeeeCCCCCccccEEEEEeC--------C
Q psy14552 125 RQIVIALQGGRLIYFEMHPETGILDECSETIQ-----------MESEVLCMALSNAPSGEQMSRFLAVGLA--------D 185 (290)
Q Consensus 125 ~~l~Val~~~~i~~l~l~~~~~~l~~~~~~~~-----------l~~ei~~l~i~~~~~~~~~~~~l~VGl~--------d 185 (290)
.+++....+++++++.+.. +.. .+.++++ -|.....+.+.+ ....++|.+. +
T Consensus 238 G~~~~vs~~g~V~v~d~~~--~~~-~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~------~~~~lyV~~~~~~~~~hk~ 308 (386)
T 3sjl_D 238 GRLVWPTYTGKIHQIDLSS--GDA-KFLPAVEALTEAERADGWRPGGWQQVAYHR------ALDRIYLLVDQRDEWRHKT 308 (386)
T ss_dssp TEEEEEBTTSEEEEEECTT--SSC-EECCCEESSCHHHHHTTEEECSSSCEEEET------TTTEEEEEEEECCTTCTTS
T ss_pred CcEEEEeCCCEEEEEECCC--Ccc-eeecceeccccccccccccCCCcceeeECC------CCCeEEEEeccccccccCC
Confidence 3444444578888887653 211 2222232 133333344432 2355666553 1
Q ss_pred --CeEEEEEeCCCCceeEeeEEecCCcceEEEEEEecCCCCCCCCCCCCCccCCceEEEEEec-CceEEEEEEeCCCCcc
Q psy14552 186 --NTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAGPVTLGNLYLYVGLQ-NGALLRMVVDQTSGDL 262 (290)
Q Consensus 186 --g~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~~~~~L~iGl~-dG~l~~~~~d~~~~~l 262 (290)
+.|.++.+. ..+.++...++.-|.++.+.. +++..||+.-+ +|.+. .+|..++.+
T Consensus 309 ~~~~V~viD~~---t~kv~~~i~vg~~~~~lavs~-----------------D~~~~ly~tn~~~~~Vs--ViD~~t~k~ 366 (386)
T 3sjl_D 309 ASRFVVVLDAK---TGERLAKFEMGHEIDSINVSQ-----------------DEKPLLYALSTGDKTLY--IHDAESGEE 366 (386)
T ss_dssp CEEEEEEEETT---TCCEEEEEEEEEEECEEEECS-----------------SSSCEEEEEETTTTEEE--EEETTTCCE
T ss_pred CCCEEEEEECC---CCeEEEEEECCCCcceEEECC-----------------CCCeEEEEEcCCCCeEE--EEECCCCcE
Confidence 345555554 356666666777777887764 45656888765 78775 458888775
Q ss_pred cccceEEecCcceEE
Q psy14552 263 SDNRMRYLGSRPVKL 277 (290)
Q Consensus 263 ~~~~~~~lG~~pv~l 277 (290)
. ++..++..|-.|
T Consensus 367 ~--~~i~~~~~p~~l 379 (386)
T 3sjl_D 367 L--RSVNQLGHGPQV 379 (386)
T ss_dssp E--EEECCCCSSCCE
T ss_pred E--EEecCCCCCcee
Confidence 3 566777777655
No 139
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=84.35 E-value=18 Score=30.73 Aligned_cols=67 Identities=12% Similarity=0.106 Sum_probs=39.2
Q ss_pred EEEEeCCCEEEEEEe-CCeEEEEEEcCCCCCceeeeeeeecCc-------ceeEEEeeeCCCCCccccEEEEEeCC----
Q psy14552 118 VRCAVNQRQIVIALQ-GGRLIYFEMHPETGILDECSETIQMES-------EVLCMALSNAPSGEQMSRFLAVGLAD---- 185 (290)
Q Consensus 118 i~as~~~~~l~Val~-~~~i~~l~l~~~~~~l~~~~~~~~l~~-------ei~~l~i~~~~~~~~~~~~l~VGl~d---- 185 (290)
++.+.++..++++.. ++.|.++.++. +.. ......+. .+..+.+.+. ..+++++..+
T Consensus 48 ~~~s~dg~~~~v~~~~~~~i~~~d~~t--~~~---~~~~~~~~~~~~~~~~~~~~~~spd------g~~l~~~~~~~~~~ 116 (349)
T 1jmx_B 48 AMMAPDNRTAYVLNNHYGDIYGIDLDT--CKN---TFHANLSSVPGEVGRSMYSFAISPD------GKEVYATVNPTQRL 116 (349)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEETTT--TEE---EEEEESCCSTTEEEECSSCEEECTT------SSEEEEEEEEEEEC
T ss_pred eEECCCCCEEEEEeCCCCcEEEEeCCC--CcE---EEEEEcccccccccccccceEECCC------CCEEEEEccccccc
Confidence 333555666666654 67888877653 322 22333322 2556666532 3577777754
Q ss_pred --------CeEEEEEeCC
Q psy14552 186 --------NTVRLISLAP 195 (290)
Q Consensus 186 --------g~v~i~~l~~ 195 (290)
+.+.+|.+..
T Consensus 117 ~~~~~~~~~~i~~~d~~~ 134 (349)
T 1jmx_B 117 NDHYVVKPPRLEVFSTAD 134 (349)
T ss_dssp SSCEEECCCEEEEEEGGG
T ss_pred ccccccCCCeEEEEECCC
Confidence 8899998763
No 140
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=84.17 E-value=30 Score=33.04 Aligned_cols=153 Identities=12% Similarity=0.103 Sum_probs=80.2
Q ss_pred EEEeecCceEEEEeeCCeEEEEEec-CCCceec--CCCceE--EEEEe----CCCEEEEEE-eCCeEEEEEEcCCCCCce
Q psy14552 80 VRCAVNQRQIVIALQGGRLIYFEMH-PVSDKKE--SDKKKI--VRCAV----NQRQIVIAL-QGGRLIYFEMHPETGILD 149 (290)
Q Consensus 80 v~as~n~~qv~ial~~g~i~~~~~~-~~~~~~~--~~~~~I--i~as~----~~~~l~Val-~~~~i~~l~l~~~~~~l~ 149 (290)
+..+-..+++.++-.++.|..+.++ ...+... +.+... ++-+. ++..++++. ++++|.++.... ++
T Consensus 184 v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t--~~-- 259 (543)
T 1nir_A 184 SRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGET--LE-- 259 (543)
T ss_dssp EEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTT--CC--
T ss_pred EEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccc--cc--
Confidence 3344445667777667777766652 1111111 112222 33355 677788886 589998886543 22
Q ss_pred eeeeeeecC-----------c-ceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEecCCcceEEEEE
Q psy14552 150 ECSETIQME-----------S-EVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMI 217 (290)
Q Consensus 150 ~~~~~~~l~-----------~-ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~~ 217 (290)
. ++.++.+ . .+..+.+.+. +..+++....+|.|.++.+.....+.. .....+..|+++.+.
T Consensus 260 ~-~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~-----~~~~~vs~~~~g~i~vvd~~~~~~l~~-~~i~~~~~~~~~~~s 332 (543)
T 1nir_A 260 P-KQIVSTRGMTVDTQTYHPEPRVAAIIASHE-----HPEFIVNVKETGKVLLVNYKDIDNLTV-TSIGAAPFLHDGGWD 332 (543)
T ss_dssp E-EEEEECCEECSSSCCEESCCCEEEEEECSS-----SSEEEEEETTTTEEEEEECTTSSSCEE-EEEECCSSCCCEEEC
T ss_pred c-ceeecccCcccCccccccCCceEEEEECCC-----CCEEEEEECCCCeEEEEEecCCCccee-EEeccCcCccCceEC
Confidence 2 2333321 1 3555555432 134444445699999998864433432 122345567776544
Q ss_pred EecCCCCCCCCCCCCCccCCceEEEEE-ecCceEEEEEEeCCCCccc
Q psy14552 218 EMGASDPTSSDEPAGPVTLGNLYLYVG-LQNGALLRMVVDQTSGDLS 263 (290)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~L~iG-l~dG~l~~~~~d~~~~~l~ 263 (290)
. .+. ||+++ ..++.+.- +|..++++.
T Consensus 333 p-----------------dg~-~l~va~~~~~~v~v--~D~~tg~l~ 359 (543)
T 1nir_A 333 S-----------------SHR-YFMTAANNSNKVAV--IDSKDRRLS 359 (543)
T ss_dssp T-----------------TSC-EEEEEEGGGTEEEE--EETTTTEEE
T ss_pred C-----------------CCC-EEEEEecCCCeEEE--EECCCCeEE
Confidence 2 233 45554 45666554 577777653
No 141
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=83.63 E-value=23 Score=31.40 Aligned_cols=127 Identities=12% Similarity=0.096 Sum_probs=66.7
Q ss_pred ceEEEEeec--CceEEEEe-eCCeEEEEEecCCCc-eecCCCceEEEE--EeCCCEEEEEEe--------CCeEEEEEEc
Q psy14552 77 KKIVRCAVN--QRQIVIAL-QGGRLIYFEMHPVSD-KKESDKKKIVRC--AVNQRQIVIALQ--------GGRLIYFEMH 142 (290)
Q Consensus 77 ~~Iv~as~n--~~qv~ial-~~g~i~~~~~~~~~~-~~~~~~~~Ii~a--s~~~~~l~Val~--------~~~i~~l~l~ 142 (290)
..+...+.+ ..+++++. .+|.|..+.+..... +..+.+..+... +.++..++++.. |+.|+++.+.
T Consensus 212 ~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~ 291 (433)
T 3bws_A 212 KWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMD 291 (433)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETT
T ss_pred CCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECC
Confidence 334444443 45565555 467777666542211 111222333222 445667777763 6688888776
Q ss_pred CCCCCceeeeeeeecCcceeEEEeeeCCCCCccccEEE-EEeCCCeEEEEEeCCCCceeEeeEEecCCcceEEEEE
Q psy14552 143 PETGILDECSETIQMESEVLCMALSNAPSGEQMSRFLA-VGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMI 217 (290)
Q Consensus 143 ~~~~~l~~~~~~~~l~~ei~~l~i~~~~~~~~~~~~l~-VGl~dg~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~~ 217 (290)
. +.+ ......+..+..+++.+. ..+++ .+..|+.+.+|.++... .......+..|.++.+.
T Consensus 292 ~--~~~---~~~~~~~~~~~~~~~~~~------g~~l~~~~~~~~~v~v~d~~~~~---~~~~~~~~~~~~~~~~s 353 (433)
T 3bws_A 292 K--EKL---IDTIGPPGNKRHIVSGNT------ENKIYVSDMCCSKIEVYDLKEKK---VQKSIPVFDKPNTIALS 353 (433)
T ss_dssp T--TEE---EEEEEEEECEEEEEECSS------TTEEEEEETTTTEEEEEETTTTE---EEEEEECSSSEEEEEEC
T ss_pred C--CcE---EeeccCCCCcceEEECCC------CCEEEEEecCCCEEEEEECCCCc---EEEEecCCCCCCeEEEc
Confidence 4 322 222334556777777542 23454 44679999999986322 22222334455555443
No 142
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=83.13 E-value=31 Score=32.94 Aligned_cols=110 Identities=9% Similarity=0.076 Sum_probs=64.3
Q ss_pred ceEEEEeec-CceEEEEeeCCeEEEEEecCCCc--eecC-CCceEEEE--E--eCC-CEEEEEEeCCeEEEEEEcCCCCC
Q psy14552 77 KKIVRCAVN-QRQIVIALQGGRLIYFEMHPVSD--KKES-DKKKIVRC--A--VNQ-RQIVIALQGGRLIYFEMHPETGI 147 (290)
Q Consensus 77 ~~Iv~as~n-~~qv~ial~~g~i~~~~~~~~~~--~~~~-~~~~Ii~a--s--~~~-~~l~Val~~~~i~~l~l~~~~~~ 147 (290)
..|.+++.+ +.+++.+..+|.|..+.+..... .... ....|.+. + .++ ..++-|..|++|++..+.. +.
T Consensus 267 ~~v~sv~~s~~~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~--~~ 344 (524)
T 2j04_B 267 SLITTFDFLSPTTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKD--IA 344 (524)
T ss_dssp TCEEEEEESSSSEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGG--HH
T ss_pred CCEEEEEecCCCeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCC--CC
Confidence 456677654 56788888889998887753211 1111 11224222 2 233 4467677799999998764 21
Q ss_pred ceeeeeeeecC-cceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCC
Q psy14552 148 LDECSETIQME-SEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAP 195 (290)
Q Consensus 148 l~~~~~~~~l~-~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~ 195 (290)
....... ..+ ..+.++++.+. ...++.|..|+++.+|.+..
T Consensus 345 ~~~~~~~-~~~~~~v~~v~fsp~------~~~l~s~~~d~tv~lwd~~~ 386 (524)
T 2j04_B 345 TTKTTVS-RFRGSNLVPVVYCPQ------IYSYIYSDGASSLRAVPSRA 386 (524)
T ss_dssp HHCEEEE-ECSCCSCCCEEEETT------TTEEEEECSSSEEEEEETTC
T ss_pred ccccccc-ccccCcccceEeCCC------cCeEEEeCCCCcEEEEECcc
Confidence 1111111 122 24667788653 34577888899999998754
No 143
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=82.96 E-value=18 Score=30.77 Aligned_cols=57 Identities=11% Similarity=0.015 Sum_probs=34.4
Q ss_pred EEEEEeCCeEEEEEEcCCCCCceeeeeeeecCc--ceeEEEeeeCCCCCccccEEEEEe-CCCeEEEEEeC
Q psy14552 127 IVIALQGGRLIYFEMHPETGILDECSETIQMES--EVLCMALSNAPSGEQMSRFLAVGL-ADNTVRLISLA 194 (290)
Q Consensus 127 l~Val~~~~i~~l~l~~~~~~l~~~~~~~~l~~--ei~~l~i~~~~~~~~~~~~l~VGl-~dg~v~i~~l~ 194 (290)
++.+..++.|.++.+.. +. .......+. .+..+.+.+. ..+++++. .++.|.+|.++
T Consensus 14 ~v~~~~~~~v~~~d~~~--~~---~~~~~~~~~~~~~~~~~~s~d------g~~~~v~~~~~~~i~~~d~~ 73 (349)
T 1jmx_B 14 MIVTNYPNNLHVVDVAS--DT---VYKSCVMPDKFGPGTAMMAPD------NRTAYVLNNHYGDIYGIDLD 73 (349)
T ss_dssp EEEEETTTEEEEEETTT--TE---EEEEEECSSCCSSCEEEECTT------SSEEEEEETTTTEEEEEETT
T ss_pred EEEeCCCCeEEEEECCC--Cc---EEEEEecCCCCCCceeEECCC------CCEEEEEeCCCCcEEEEeCC
Confidence 44444577888877653 32 223445555 5666666532 34566555 58999998875
No 144
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=80.42 E-value=25 Score=29.58 Aligned_cols=71 Identities=15% Similarity=0.042 Sum_probs=41.0
Q ss_pred cEEEEEeCCCeEEEEEeCCCCceeEeeEEecCCcceEEEEEEecCCCCCCCCCCCCCccCCceEEEEEecCceEEEEEEe
Q psy14552 177 RFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAGPVTLGNLYLYVGLQNGALLRMVVD 256 (290)
Q Consensus 177 ~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~~~~~L~iGl~dG~l~~~~~d 256 (290)
.+++++ ++.|.+|.++. .+.+.....+..|.++.+.. ++. +|+++-.+|.+..+ |
T Consensus 253 ~~l~~~--~~~v~~~d~~~---~~~~~~~~~~~~~~~~~~s~-----------------dg~-~l~~~~~~~~i~v~--d 307 (337)
T 1pby_B 253 TRAFGA--YNVLESFDLEK---NASIKRVPLPHSYYSVNVST-----------------DGS-TVWLGGALGDLAAY--D 307 (337)
T ss_dssp SEEEEE--ESEEEEEETTT---TEEEEEEECSSCCCEEEECT-----------------TSC-EEEEESBSSEEEEE--E
T ss_pred CEEEEe--CCeEEEEECCC---CcCcceecCCCceeeEEECC-----------------CCC-EEEEEcCCCcEEEE--E
Confidence 456666 68888888653 23333334555666665432 233 58888888988776 4
Q ss_pred CCCCcccccceEEecCcc
Q psy14552 257 QTSGDLSDNRMRYLGSRP 274 (290)
Q Consensus 257 ~~~~~l~~~~~~~lG~~p 274 (290)
..++++. +...+|..|
T Consensus 308 ~~~~~~~--~~~~~~~~~ 323 (337)
T 1pby_B 308 AETLEKK--GQVDLPGNA 323 (337)
T ss_dssp TTTCCEE--EEEECGGGC
T ss_pred CcCCcEE--EEEEcCCCC
Confidence 5555442 234455433
No 145
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=79.65 E-value=32 Score=30.26 Aligned_cols=98 Identities=9% Similarity=0.080 Sum_probs=56.0
Q ss_pred cCceEEEEeeCCeEEEEEecCC-CceecCC----------CceEEEE-EeCCCEEEEEEeCCeEEEEEEcCCCCCceeee
Q psy14552 85 NQRQIVIALQGGRLIYFEMHPV-SDKKESD----------KKKIVRC-AVNQRQIVIALQGGRLIYFEMHPETGILDECS 152 (290)
Q Consensus 85 n~~qv~ial~~g~i~~~~~~~~-~~~~~~~----------~~~Ii~a-s~~~~~l~Val~~~~i~~l~l~~~~~~l~~~~ 152 (290)
.+..+.++..+|.|..+..... ..|.... ...+.+. ...+..+.++..++.|+.+.... +++ .
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~g~l~a~d~~t--G~~---~ 126 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEKAQVYALNTSD--GTV---A 126 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEETTSEEEEEETTT--CCE---E
T ss_pred ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEcCCCEEEEEECCC--CCE---E
Confidence 4677777777777877765432 2465422 2223233 45567788888888887776543 532 1
Q ss_pred eeeecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeC
Q psy14552 153 ETIQMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLA 194 (290)
Q Consensus 153 ~~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~ 194 (290)
.+..++.++...... ....+++|..+|.++.+...
T Consensus 127 W~~~~~~~~~~~p~~-------~~~~v~v~~~~g~l~~~d~~ 161 (376)
T 3q7m_A 127 WQTKVAGEALSRPVV-------SDGLVLIHTSNGQLQALNEA 161 (376)
T ss_dssp EEEECSSCCCSCCEE-------ETTEEEEECTTSEEEEEETT
T ss_pred EEEeCCCceEcCCEE-------ECCEEEEEcCCCeEEEEECC
Confidence 234444433211111 13478899999988777753
No 146
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=79.30 E-value=32 Score=30.19 Aligned_cols=133 Identities=14% Similarity=0.147 Sum_probs=72.4
Q ss_pred cCceEEEEeeCCeEEEEEecCC-CceecCCCceEEEEEeCCCEEEEEEeCCeEEEEEEcCCCCCceeeeeeee-cCcc-e
Q psy14552 85 NQRQIVIALQGGRLIYFEMHPV-SDKKESDKKKIVRCAVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQ-MESE-V 161 (290)
Q Consensus 85 n~~qv~ial~~g~i~~~~~~~~-~~~~~~~~~~Ii~as~~~~~l~Val~~~~i~~l~l~~~~~~l~~~~~~~~-l~~e-i 161 (290)
.+..+.+...+|.+..+..... ..|..+... .......+..+.++..++.|+.+.... ++. .. +.. ++.. .
T Consensus 238 ~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~~-~~~~~~~~~~l~~~~~~g~l~~~d~~t--G~~--~w-~~~~~~~~~~ 311 (376)
T 3q7m_A 238 VNGVVFALAYNGNLTALDLRSGQIMWKRELGS-VNDFIVDGNRIYLVDQNDRVMALTIDG--GVT--LW-TQSDLLHRLL 311 (376)
T ss_dssp ETTEEEEECTTSCEEEEETTTCCEEEEECCCC-EEEEEEETTEEEEEETTCCEEEEETTT--CCE--EE-EECTTTTSCC
T ss_pred ECCEEEEEecCcEEEEEECCCCcEEeeccCCC-CCCceEECCEEEEEcCCCeEEEEECCC--CcE--EE-eecccCCCcc
Confidence 3667777777888887776432 246654322 222234466778887778887776543 432 11 222 2211 1
Q ss_pred eEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEecC-C-cceEEEEEEecCCCCCCCCCCCCCccCCce
Q psy14552 162 LCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLP-D-LAESLVMIEMGASDPTSSDEPAGPVTLGNL 239 (290)
Q Consensus 162 ~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~-~-~p~Sl~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (290)
....+ ....+++|..+|.++.+...... .+....++ . +..+..+. +.
T Consensus 312 ~~~~~--------~~~~l~v~~~~g~l~~~d~~tG~---~~~~~~~~~~~~~~~~~~~-------------------~~- 360 (376)
T 3q7m_A 312 TSPVL--------YNGNLVVGDSEGYLHWINVEDGR---FVAQQKVDSSGFQTEPVAA-------------------DG- 360 (376)
T ss_dssp CCCEE--------ETTEEEEECTTSEEEEEETTTCC---EEEEEECCTTCBCSCCEEE-------------------TT-
T ss_pred cCCEE--------ECCEEEEEeCCCeEEEEECCCCc---EEEEEecCCCcceeCCEEE-------------------CC-
Confidence 11111 13578999999988888754322 22223332 1 11111111 12
Q ss_pred EEEEEecCceEEEEE
Q psy14552 240 YLYVGLQNGALLRMV 254 (290)
Q Consensus 240 ~L~iGl~dG~l~~~~ 254 (290)
.|++|..+|.|+.|+
T Consensus 361 ~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 361 KLLIQAKDGTVYSIT 375 (376)
T ss_dssp EEEEEBTTSCEEEEE
T ss_pred EEEEEeCCCEEEEEe
Confidence 489999999998774
No 147
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=78.84 E-value=27 Score=29.10 Aligned_cols=114 Identities=15% Similarity=0.171 Sum_probs=61.2
Q ss_pred ceEEEEeecCceEEEEeeCCeEEEEEecCCCceec--CC-CceE--EEEEeCCCEEEEEEeCCeEEEEEEcCCCCCceee
Q psy14552 77 KKIVRCAVNQRQIVIALQGGRLIYFEMHPVSDKKE--SD-KKKI--VRCAVNQRQIVIALQGGRLIYFEMHPETGILDEC 151 (290)
Q Consensus 77 ~~Iv~as~n~~qv~ial~~g~i~~~~~~~~~~~~~--~~-~~~I--i~as~~~~~l~Val~~~~i~~l~l~~~~~~l~~~ 151 (290)
..+...+.+...++.+..++.+............. .. ...+ .+...++..++.+..|+.|+++.+..........
T Consensus 110 ~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~ 189 (318)
T 4ggc_A 110 ARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPL 189 (318)
T ss_dssp SCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCS
T ss_pred ceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccce
Confidence 45666666677777777777776554432211111 11 1112 2223456667878789999998876411111111
Q ss_pred eeeeecCcceeEEEeeeCCCCCccccEEE--EEeCCCeEEEEEeCC
Q psy14552 152 SETIQMESEVLCMALSNAPSGEQMSRFLA--VGLADNTVRLISLAP 195 (290)
Q Consensus 152 ~~~~~l~~ei~~l~i~~~~~~~~~~~~l~--VGl~dg~v~i~~l~~ 195 (290)
.........+.++.+.+.. ...+. .|..++.+.+|....
T Consensus 190 ~~~~~~~~~v~~~~~~~~~-----~~~~~~~~~~~~~~i~lwd~~~ 230 (318)
T 4ggc_A 190 QTFTQHQGAVKAVAWCPWQ-----SNVLATGGGTSDRHIRIWNVCS 230 (318)
T ss_dssp EEECCCCSCEEEEEECTTS-----TTEEEEEECTTTCEEEEEETTT
T ss_pred eeecccCCceEEEEecCCC-----CcEEEEEecCCCCEEEEEeccc
Confidence 1112245567777765442 33343 344589999998754
No 148
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=77.31 E-value=33 Score=29.18 Aligned_cols=206 Identities=12% Similarity=0.090 Sum_probs=99.2
Q ss_pred CccCCCCeEEEEeeCCCeEEEEecCCeEEEeecCcceeeecc-CCC----CCceEEEEeecCceEEEEee--CCeEEEEE
Q psy14552 30 GFYGTTPTLCCSAMGDNSIVQVYPDGIRHIGAKNTTWKVSDK-KES----DKKKIVRCAVNQRQIVIALQ--GGRLIYFE 102 (290)
Q Consensus 30 gf~~~~~Ti~~~~~~~~~ivQVt~~~v~l~~~~~~~~~~~~~-~~~----~~~~Iv~as~n~~qv~ial~--~g~i~~~~ 102 (290)
.|..+.+.++++.-.++.+..+...+-..... +..... .|. .+..-+..+-+..++.++.. ++.|..+.
T Consensus 95 ~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d 170 (353)
T 3vgz_A 95 TINNTTQTLWFGNTVNSAVTAIDAKTGEVKGR----LVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVD 170 (353)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTTCCEEEE----EESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEE
T ss_pred EECCCCCEEEEEecCCCEEEEEeCCCCeeEEE----EecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEc
Confidence 45566677887777666665555433222110 000000 000 00111222333455555542 45566554
Q ss_pred ecCCCc-eecC-CCceE--EEEEeCCCEEEEEEeCCeEEEEEEcCCCCCceeeeeeeec-----CcceeEEEeeeCCCCC
Q psy14552 103 MHPVSD-KKES-DKKKI--VRCAVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQM-----ESEVLCMALSNAPSGE 173 (290)
Q Consensus 103 ~~~~~~-~~~~-~~~~I--i~as~~~~~l~Val~~~~i~~l~l~~~~~~l~~~~~~~~l-----~~ei~~l~i~~~~~~~ 173 (290)
...... +..+ .+... ++.+.++..++++..++.|.++.+.. +.. ...... ...+..+++.+.
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~--~~~---~~~~~~~~~~~~~~~~~~~~s~d---- 241 (353)
T 3vgz_A 171 GGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTAD--NKI---LSRKKLLDDGKEHFFINISLDTA---- 241 (353)
T ss_dssp TTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTT--TEE---EEEEECCCSSSCCCEEEEEEETT----
T ss_pred CCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCC--CeE---EEEEEcCCCCCCcccceEEECCC----
Confidence 432111 1111 11111 23355667788887788888776543 322 222332 234555666542
Q ss_pred ccccEEEEEeC-CCeEEEEEeCCCCceeEeeEEecCCcceEEEEEEecCCCCCCCCCCCCCccCCceEEEEEe-cCceEE
Q psy14552 174 QMSRFLAVGLA-DNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAGPVTLGNLYLYVGL-QNGALL 251 (290)
Q Consensus 174 ~~~~~l~VGl~-dg~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~~~~~L~iGl-~dG~l~ 251 (290)
..+++++.. ++.+.+|.+..... +....++. |..+.+.. ++. +|+++- .+|.+.
T Consensus 242 --g~~l~~~~~~~~~v~~~d~~~~~~---~~~~~~~~-~~~~~~s~-----------------dg~-~l~v~~~~~~~v~ 297 (353)
T 3vgz_A 242 --RQRAFITDSKAAEVLVVDTRNGNI---LAKVAAPE-SLAVLFNP-----------------ARN-EAYVTHRQAGKVS 297 (353)
T ss_dssp --TTEEEEEESSSSEEEEEETTTCCE---EEEEECSS-CCCEEEET-----------------TTT-EEEEEETTTTEEE
T ss_pred --CCEEEEEeCCCCEEEEEECCCCcE---EEEEEcCC-CceEEECC-----------------CCC-EEEEEECCCCeEE
Confidence 356777776 68999998753322 22223332 44443331 233 466666 578777
Q ss_pred EEEEeCCCCcccccceEEecCcceE
Q psy14552 252 RMVVDQTSGDLSDNRMRYLGSRPVK 276 (290)
Q Consensus 252 ~~~~d~~~~~l~~~~~~~lG~~pv~ 276 (290)
.+ |..++++. +....|..|..
T Consensus 298 ~~--d~~~~~~~--~~~~~~~~~~~ 318 (353)
T 3vgz_A 298 VI--DAKSYKVV--KTFDTPTHPNS 318 (353)
T ss_dssp EE--ETTTTEEE--EEEECCSEEEE
T ss_pred EE--ECCCCeEE--EEEecCCCCCe
Confidence 66 55566543 23455655543
No 149
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=76.57 E-value=32 Score=28.67 Aligned_cols=110 Identities=14% Similarity=0.151 Sum_probs=64.5
Q ss_pred ceEEEEeec--CceEEEEeeCCeEEEEEecCCCceec-CC-CceEEEEEeCCCEEEEEEeCCeEEEEEEcCCCCCceeee
Q psy14552 77 KKIVRCAVN--QRQIVIALQGGRLIYFEMHPVSDKKE-SD-KKKIVRCAVNQRQIVIALQGGRLIYFEMHPETGILDECS 152 (290)
Q Consensus 77 ~~Iv~as~n--~~qv~ial~~g~i~~~~~~~~~~~~~-~~-~~~Ii~as~~~~~l~Val~~~~i~~l~l~~~~~~l~~~~ 152 (290)
..|.+++.+ +++++.+..+|.|....+........ .. ...+.+.+.++..++.+..++.+++...... .. ...
T Consensus 68 ~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~-~~--~~~ 144 (318)
T 4ggc_A 68 EYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVA-EH--HVA 144 (318)
T ss_dssp CCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSS-SC--EEE
T ss_pred CeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecCCCEEEEEecCCceEeeecCCC-ce--eEE
Confidence 345555554 67888888889888776653221111 11 1223333555666777777887777665431 11 111
Q ss_pred eeeecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCC
Q psy14552 153 ETIQMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAP 195 (290)
Q Consensus 153 ~~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~ 195 (290)
....-...+.++.+.+ ...+++.|..||.+.+|.+..
T Consensus 145 ~~~~~~~~~~~~~~~~------~~~~l~s~~~d~~i~iwd~~~ 181 (318)
T 4ggc_A 145 TLSGHSQEVCGLRWAP------DGRHLASGGNDNLVNVWPSAP 181 (318)
T ss_dssp EEECCSSCEEEEEECT------TSSEEEEEETTSCEEEEESSC
T ss_pred EEcCccCceEEEEEcC------CCCEEEEEecCcceeEEECCC
Confidence 1112345566666643 246899999999999999864
No 150
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=75.95 E-value=39 Score=29.40 Aligned_cols=83 Identities=13% Similarity=0.063 Sum_probs=47.3
Q ss_pred EEEEeCCCEEEEEE-eCCeEEEEEEcCCCCCceeeeeeeecCc------ceeEEEeeeCCCCCccccEEEEEeC--CCeE
Q psy14552 118 VRCAVNQRQIVIAL-QGGRLIYFEMHPETGILDECSETIQMES------EVLCMALSNAPSGEQMSRFLAVGLA--DNTV 188 (290)
Q Consensus 118 i~as~~~~~l~Val-~~~~i~~l~l~~~~~~l~~~~~~~~l~~------ei~~l~i~~~~~~~~~~~~l~VGl~--dg~v 188 (290)
++.+.++ ++.|+. +++.|..+.... +.+ ...++.+. .+..+.+. ...|+|+.| ++.|
T Consensus 89 i~~~~~g-~lyv~~~~~~~v~~iD~~t--~~~---~~~i~~g~~~~~~~~p~~i~~~--------~~~lyv~~~~~~~~v 154 (328)
T 3dsm_A 89 IHFLSDE-KAYVTQIWDYRIFIINPKT--YEI---TGYIECPDMDMESGSTEQMVQY--------GKYVYVNCWSYQNRI 154 (328)
T ss_dssp EEEEETT-EEEEEEBSCSEEEEEETTT--TEE---EEEEECTTCCTTTCBCCCEEEE--------TTEEEEEECTTCCEE
T ss_pred EEEeCCC-eEEEEECCCCeEEEEECCC--CeE---EEEEEcCCccccCCCcceEEEE--------CCEEEEEcCCCCCEE
Confidence 3333444 777776 578887775443 322 23344444 55555552 246777775 7888
Q ss_pred EEEEeCCCCceeEeeEEecCCcceEEEEE
Q psy14552 189 RLISLAPQDCLKQKNLQGLPDLAESLVMI 217 (290)
Q Consensus 189 ~i~~l~~~~~l~~~~~~~L~~~p~Sl~~~ 217 (290)
.++.+.. .+..+...++..|..+.+.
T Consensus 155 ~viD~~t---~~~~~~i~~g~~p~~i~~~ 180 (328)
T 3dsm_A 155 LKIDTET---DKVVDELTIGIQPTSLVMD 180 (328)
T ss_dssp EEEETTT---TEEEEEEECSSCBCCCEEC
T ss_pred EEEECCC---CeEEEEEEcCCCccceEEc
Confidence 8887652 2333344556677766553
No 151
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=75.09 E-value=52 Score=30.39 Aligned_cols=92 Identities=11% Similarity=0.082 Sum_probs=58.8
Q ss_pred CCceEEEEEeCCCEEEEEEe----------CCeEEEEEEcCCCCCceeeeeeeecCcceeEEEeeeCCCCCccccEEEEE
Q psy14552 113 DKKKIVRCAVNQRQIVIALQ----------GGRLIYFEMHPETGILDECSETIQMESEVLCMALSNAPSGEQMSRFLAVG 182 (290)
Q Consensus 113 ~~~~Ii~as~~~~~l~Val~----------~~~i~~l~l~~~~~~l~~~~~~~~l~~ei~~l~i~~~~~~~~~~~~l~VG 182 (290)
.+...++.+..+.++.|+.. +++|.++.+.. . ++.+++.++..+--+.+.+. +...|++.
T Consensus 280 ~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t--~---kv~~~i~vg~~~~~lavs~D-----~~~~ly~t 349 (386)
T 3sjl_D 280 GGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKT--G---ERLAKFEMGHEIDSINVSQD-----EKPLLYAL 349 (386)
T ss_dssp CSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTT--C---CEEEEEEEEEEECEEEECSS-----SSCEEEEE
T ss_pred CCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCC--C---eEEEEEECCCCcceEEECCC-----CCeEEEEE
Confidence 33333444666677777653 14566555433 3 33456677777777777543 24578888
Q ss_pred eC-CCeEEEEEeCCCCceeEeeEEecCCcceEEEEE
Q psy14552 183 LA-DNTVRLISLAPQDCLKQKNLQGLPDLAESLVMI 217 (290)
Q Consensus 183 l~-dg~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~~ 217 (290)
.+ ++.|.++... ..+.++...++.-|.++++.
T Consensus 350 n~~~~~VsViD~~---t~k~~~~i~~~~~p~~l~~s 382 (386)
T 3sjl_D 350 STGDKTLYIHDAE---SGEELRSVNQLGHGPQVITT 382 (386)
T ss_dssp ETTTTEEEEEETT---TCCEEEEECCCCSSCCEEEE
T ss_pred cCCCCeEEEEECC---CCcEEEEecCCCCCceeEEC
Confidence 87 8999988865 35666667777788888765
No 152
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=73.40 E-value=34 Score=31.44 Aligned_cols=74 Identities=16% Similarity=0.180 Sum_probs=48.5
Q ss_pred CCCEEEEEEe---CCeEEEEEEcCCCCCceeeeeeeecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCce
Q psy14552 123 NQRQIVIALQ---GGRLIYFEMHPETGILDECSETIQMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCL 199 (290)
Q Consensus 123 ~~~~l~Val~---~~~i~~l~l~~~~~~l~~~~~~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l 199 (290)
...+++.+.. |+.|+++.+.++ +.... ...-.+.++.+++|.+.+. ...+|+-|.+|++|.+|.++....+
T Consensus 143 ~~g~lv~ss~~g~d~~V~~~~~s~d-G~~~~--s~~~~~~~v~~l~fs~~~g---~~~~LaSgS~D~TIkIWDl~TGk~l 216 (356)
T 2w18_A 143 TKRRLVSSSGTLSDQQVEVMTFAED-GGGKE--NQFLMPPEETILTFAEVQG---MQEALLGTTIMNNIVIWNLKTGQLL 216 (356)
T ss_dssp TTTEEEEEESSSTTCEEEEEEECTT-SCEEE--EEEECCCSSCEEEEEEEET---STTEEEEEETTSEEEEEETTTCCEE
T ss_pred CCCcEEEecccCCCCcEEEEEECCC-Cceee--eeccCCCceeeEEeeccCC---CCceEEEecCCCcEEEEECCCCcEE
Confidence 4456666543 889999998763 54222 1123567777788876321 2578888899999999998754444
Q ss_pred eEe
Q psy14552 200 KQK 202 (290)
Q Consensus 200 ~~~ 202 (290)
..+
T Consensus 217 ~tL 219 (356)
T 2w18_A 217 KKM 219 (356)
T ss_dssp EEE
T ss_pred EEE
Confidence 444
No 153
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=71.74 E-value=54 Score=29.07 Aligned_cols=67 Identities=10% Similarity=-0.011 Sum_probs=44.5
Q ss_pred CeEEEEEeCCCCceeEeeEEecCCcceEEEEEEecCCCCCCCCCCCCCccCCceEEEEEecCceEEEEEEeCCCCccccc
Q psy14552 186 NTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAGPVTLGNLYLYVGLQNGALLRMVVDQTSGDLSDN 265 (290)
Q Consensus 186 g~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~~~~~L~iGl~dG~l~~~~~d~~~~~l~~~ 265 (290)
+.|.+|.+. ..+.++...++. |.++.+.. +++ +||++-+ |.+.-| |..++.|.-.
T Consensus 286 ~~v~viD~~---t~~~v~~i~~~~-p~~ia~sp-----------------dg~-~l~v~n~-~~v~v~--D~~t~~l~~~ 340 (361)
T 2oiz_A 286 AEIWVMDTK---TKQRVARIPGRD-ALSMTIDQ-----------------QRN-LMLTLDG-GNVNVY--DISQPEPKLL 340 (361)
T ss_dssp SEEEEEETT---TTEEEEEEECTT-CCEEEEET-----------------TTT-EEEEECS-SCEEEE--ECSSSSCEEE
T ss_pred ceEEEEECC---CCcEEEEEecCC-eeEEEECC-----------------CCC-EEEEeCC-CeEEEE--ECCCCcceee
Confidence 367777765 356666667888 99998774 344 6888776 777765 7778833332
Q ss_pred ceE-EecCcceEE
Q psy14552 266 RMR-YLGSRPVKL 277 (290)
Q Consensus 266 ~~~-~lG~~pv~l 277 (290)
+.. ..|..|-.+
T Consensus 341 ~~i~~~G~~P~~~ 353 (361)
T 2oiz_A 341 RTIEGAAEASLQV 353 (361)
T ss_dssp EEETTSCSSEEEE
T ss_pred EEeccCCCCcEEE
Confidence 332 578888665
No 154
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=68.58 E-value=64 Score=28.66 Aligned_cols=61 Identities=16% Similarity=0.216 Sum_probs=44.4
Q ss_pred EEEEEEeCCeEEEEEEcCCCCCceeeeeeeecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCC
Q psy14552 126 QIVIALQGGRLIYFEMHPETGILDECSETIQMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAP 195 (290)
Q Consensus 126 ~l~Val~~~~i~~l~l~~~~~~l~~~~~~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~ 195 (290)
.++-+..|++|++..+... . ...........+.++++.|. ...+|++|..||++.+|.+..
T Consensus 158 ~las~s~D~tv~~Wd~~~~-~---~~~~~~~~~~~v~~v~~~p~-----~~~~l~~~~~d~~v~~wd~~t 218 (393)
T 4gq1_A 158 VIASVGDDCTLIIWRLTDE-G---PILAGYPLSSPGISVQFRPS-----NPNQLIVGERNGNIRIFDWTL 218 (393)
T ss_dssp EEEEEETTSEEEEEEEETT-E---EEEEEEECSSCEEEEEEETT-----EEEEEEEEETTSEEEEEETTC
T ss_pred EEEEEECCCeEEEEECCCC-c---eeeeecCCCCCcEEEEECCC-----CCceEEecCCCCEEEEEECCC
Confidence 3555567999999998752 2 22223456778889998754 256899999999999999864
No 155
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=67.14 E-value=65 Score=28.18 Aligned_cols=117 Identities=8% Similarity=0.062 Sum_probs=65.7
Q ss_pred EeCCCEEEEEEe-CCeEEEEEEcCCCCCceeeeeee-ecCc-------------ceeEEE-eeeCCCCCccccEEEEEeC
Q psy14552 121 AVNQRQIVIALQ-GGRLIYFEMHPETGILDECSETI-QMES-------------EVLCMA-LSNAPSGEQMSRFLAVGLA 184 (290)
Q Consensus 121 s~~~~~l~Val~-~~~i~~l~l~~~~~~l~~~~~~~-~l~~-------------ei~~l~-i~~~~~~~~~~~~l~VGl~ 184 (290)
+.++..++++.. ++++.++.++..++.+....... .+|. .+..++ +.+. ..+|+++..
T Consensus 201 spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spd------G~~l~v~~~ 274 (365)
T 1jof_A 201 HPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFS------GKYMFASSR 274 (365)
T ss_dssp CTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTT------SSEEEEEEE
T ss_pred CCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCC------CCEEEEECC
Confidence 566777777765 67899998875335442201112 2322 366677 6532 356777764
Q ss_pred -CC-----eEEEEEeCCCCceeEeeE-Ee-cCCcceEEEEEEecCCCCCCCCCCCCCccCCceEEEEEec-CceEEEEEE
Q psy14552 185 -DN-----TVRLISLAPQDCLKQKNL-QG-LPDLAESLVMIEMGASDPTSSDEPAGPVTLGNLYLYVGLQ-NGALLRMVV 255 (290)
Q Consensus 185 -dg-----~v~i~~l~~~~~l~~~~~-~~-L~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~~~~~L~iGl~-dG~l~~~~~ 255 (290)
++ .|.+|.+++...+..+.. .. .+.-|+++.+..- .+ ...+|+++-. +|.+.-|.+
T Consensus 275 ~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~--------------~~-dg~~l~v~~~~~~~v~v~~~ 339 (365)
T 1jof_A 275 ANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPC--------------PW-SDEWMAITDDQEGWLEIYRW 339 (365)
T ss_dssp ESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEEC--------------TT-CTTEEEEECSSSCEEEEEEE
T ss_pred CCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCC--------------Cc-CCCEEEEEEcCCCeEEEEEE
Confidence 33 899999974434443211 11 2334665554420 00 1235888866 488888888
Q ss_pred eCC
Q psy14552 256 DQT 258 (290)
Q Consensus 256 d~~ 258 (290)
+..
T Consensus 340 ~~~ 342 (365)
T 1jof_A 340 KDE 342 (365)
T ss_dssp ETT
T ss_pred chh
Confidence 864
No 156
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=67.01 E-value=63 Score=29.09 Aligned_cols=86 Identities=13% Similarity=0.060 Sum_probs=52.7
Q ss_pred EEEEeCCCEEEEEEe----------CCeEEEEEEcCCCCCceeeeeeeecCcceeEEEeeeCCCCCccccEEEEEeC-CC
Q psy14552 118 VRCAVNQRQIVIALQ----------GGRLIYFEMHPETGILDECSETIQMESEVLCMALSNAPSGEQMSRFLAVGLA-DN 186 (290)
Q Consensus 118 i~as~~~~~l~Val~----------~~~i~~l~l~~~~~~l~~~~~~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~-dg 186 (290)
++.+.++.++.|+.. ++.|.++.... + +..+++.++..+..+.+.+. +...++++.+ ++
T Consensus 272 ~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t--~---~vv~~i~~g~~p~~i~~s~D-----g~~~l~v~~~~~~ 341 (373)
T 2mad_H 272 VAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLV--G---QTSSQISLGHDVDAISVAQD-----GGPDLYALSAGTE 341 (373)
T ss_pred EEECCCCCEEEEEeccCCcccccCCCCeEEEEECCC--C---EEEEEEECCCCcCeEEECCC-----CCeEEEEEcCCCC
Confidence 333555566666543 24566665433 2 23356677777888888643 2336777775 89
Q ss_pred eEEEEEeCCCCceeEeeE-EecCCcceEEEE
Q psy14552 187 TVRLISLAPQDCLKQKNL-QGLPDLAESLVM 216 (290)
Q Consensus 187 ~v~i~~l~~~~~l~~~~~-~~L~~~p~Sl~~ 216 (290)
.|.++.+. ..+.++. ..+|.-|.-|..
T Consensus 342 ~V~ViD~~---t~~vv~~i~~vG~~P~~~~~ 369 (373)
T 2mad_H 342 VLHIYDAG---AGDQDQSTVELGSGPQVLSV 369 (373)
T ss_pred eEEEEECC---CCCEEeeecCCCCCCcEEEE
Confidence 99998876 3555554 456777775544
No 157
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=58.17 E-value=1.3e+02 Score=28.83 Aligned_cols=82 Identities=18% Similarity=0.135 Sum_probs=53.3
Q ss_pred EEEEEEe-CCeEEEEEEcCCCCCceeeeeeeecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeE
Q psy14552 126 QIVIALQ-GGRLIYFEMHPETGILDECSETIQMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNL 204 (290)
Q Consensus 126 ~l~Val~-~~~i~~l~l~~~~~~l~~~~~~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~ 204 (290)
.++|+.. +++|.++..+. +. +..++.....+-.+.+.+. ..+++|+..||.|.+|.+... ..+.+..
T Consensus 168 ~~~V~~~~~~~V~viD~~t--~~---v~~~i~~g~~p~~v~~SpD------Gr~lyv~~~dg~V~viD~~~~-t~~~v~~ 235 (567)
T 1qks_A 168 LFSVTLRDAGQIALIDGST--YE---IKTVLDTGYAVHISRLSAS------GRYLFVIGRDGKVNMIDLWMK-EPTTVAE 235 (567)
T ss_dssp EEEEEETTTTEEEEEETTT--CC---EEEEEECSSCEEEEEECTT------SCEEEEEETTSEEEEEETTSS-SCCEEEE
T ss_pred eEEEEeCCCCeEEEEECCC--Ce---EEEEEeCCCCccceEECCC------CCEEEEEcCCCeEEEEECCCC-CCcEeEE
Confidence 4555554 67787776543 32 2345566666667777542 468889989999998887411 2455555
Q ss_pred EecCCcceEEEEEEe
Q psy14552 205 QGLPDLAESLVMIEM 219 (290)
Q Consensus 205 ~~L~~~p~Sl~~~~~ 219 (290)
...+.-|+.+.+..|
T Consensus 236 i~~G~~P~~ia~s~~ 250 (567)
T 1qks_A 236 IKIGSEARSIETSKM 250 (567)
T ss_dssp EECCSEEEEEEECCS
T ss_pred EecCCCCceeEEccc
Confidence 667778998887643
No 158
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=54.97 E-value=98 Score=28.36 Aligned_cols=82 Identities=15% Similarity=0.214 Sum_probs=51.1
Q ss_pred EEEEEeC---CCeEEEEEeCCC-CceeEeeEE--ecC---CcceEEEEEEecCCCCCCCCCCCCCccCCceEEEEEecCc
Q psy14552 178 FLAVGLA---DNTVRLISLAPQ-DCLKQKNLQ--GLP---DLAESLVMIEMGASDPTSSDEPAGPVTLGNLYLYVGLQNG 248 (290)
Q Consensus 178 ~l~VGl~---dg~v~i~~l~~~-~~l~~~~~~--~L~---~~p~Sl~~~~~~~~~~~~~~~~~~~~~~~~~~L~iGl~dG 248 (290)
.+++... ++.|.+|.+++. ..|..+... .++ .-|.-+++.+= ...+..|+|+.-++|
T Consensus 88 la~as~R~~~~n~l~vf~iDp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~--------------~~~g~~yafV~~k~G 153 (355)
T 3amr_A 88 IAAASNRSEGKNTIEIYAIDGKNGTLQSMTDPDHPIATAINEVYGFTLYHS--------------QKTGKYYAMVTGKEG 153 (355)
T ss_dssp EEEEEECSTTCCEEEEEEECTTTCCEEECSCTTSCEECCCSSCCCEEEEEC--------------TTTCCEEEEEECSSS
T ss_pred EEEEeCCCCCCCeEEEEEECCCCCceeeccccccCcCCCCCCeeEEEEEec--------------CCCCcEEEEEECCCC
Confidence 4444443 579999999864 345554211 111 34666777651 114568999999999
Q ss_pred eEEEEEE-eCCCCccccc--ceEEecCc
Q psy14552 249 ALLRMVV-DQTSGDLSDN--RMRYLGSR 273 (290)
Q Consensus 249 ~l~~~~~-d~~~~~l~~~--~~~~lG~~ 273 (290)
.+..|.+ +..+|.++.+ |...+|.+
T Consensus 154 ~~~q~~l~~~~~g~~~~~lVR~f~lgsq 181 (355)
T 3amr_A 154 EFEQYELKADKNGYISGKKVRAFKMNSQ 181 (355)
T ss_dssp EEEEEEEEECTTSCEEEEEEEEEECSSC
T ss_pred eEEEEEEEeCCCCcccceEEEEecCCCC
Confidence 9999998 4455545443 45556654
No 159
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=53.91 E-value=1.4e+02 Score=27.74 Aligned_cols=83 Identities=12% Similarity=0.088 Sum_probs=52.0
Q ss_pred EEEeCCCEEEEEEe----------CCeEEEEEEcCCCCCceeeeeeeecCcceeEEEeeeCCCCCccccEEEEEeC-CCe
Q psy14552 119 RCAVNQRQIVIALQ----------GGRLIYFEMHPETGILDECSETIQMESEVLCMALSNAPSGEQMSRFLAVGLA-DNT 187 (290)
Q Consensus 119 ~as~~~~~l~Val~----------~~~i~~l~l~~~~~~l~~~~~~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~-dg~ 187 (290)
+.+.++.++.|+.. +++|.++.... . +..+++.++..+..+.+.+. +..++++..| ++.
T Consensus 325 a~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T----~-kvv~~I~vg~~P~gia~spD-----g~~~lyv~n~~s~~ 394 (426)
T 3c75_H 325 AYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAET----G-ERINKIELGHEIDSINVSQD-----AEPLLYALSAGTQT 394 (426)
T ss_dssp EEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTT----C-CEEEEEEEEEEECEEEECCS-----SSCEEEEEETTTTE
T ss_pred EEcCCCCEEEEEecccccccccCCCCEEEEEECCC----C-eEEEEEECCCCcCeEEEccC-----CCEEEEEEcCCCCe
Confidence 33555566666653 23566655433 2 23356677777888888643 2448889887 999
Q ss_pred EEEEEeCCCCceeEeeEE-ecCCcceEE
Q psy14552 188 VRLISLAPQDCLKQKNLQ-GLPDLAESL 214 (290)
Q Consensus 188 v~i~~l~~~~~l~~~~~~-~L~~~p~Sl 214 (290)
|.++.+. ..+.++.. .++.-|.-+
T Consensus 395 VsVID~~---t~kvv~tI~~vG~~P~~i 419 (426)
T 3c75_H 395 LHIYDAA---TGEELRSVDQLGRGPQII 419 (426)
T ss_dssp EEEEETT---TCCEEEEECCCSSSCCEE
T ss_pred EEEEECC---CCCEEEEecCCCCCCcEE
Confidence 9999876 35666553 577777733
No 160
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=48.56 E-value=1.4e+02 Score=26.01 Aligned_cols=106 Identities=16% Similarity=0.164 Sum_probs=61.5
Q ss_pred eCCeEEEEEEcCCCCCceeeeeee--ecCcceeEEEeeeCCCCCccccEEEEEe-CCCeEEEEEeCCCCceeEeeEEec-
Q psy14552 132 QGGRLIYFEMHPETGILDECSETI--QMESEVLCMALSNAPSGEQMSRFLAVGL-ADNTVRLISLAPQDCLKQKNLQGL- 207 (290)
Q Consensus 132 ~~~~i~~l~l~~~~~~l~~~~~~~--~l~~ei~~l~i~~~~~~~~~~~~l~VGl-~dg~v~i~~l~~~~~l~~~~~~~L- 207 (290)
.++.+.++.++.+ +.+....... .-...+..+.+.+. ..+++++. .++.|.+|.+++...+..+....+
T Consensus 117 ~~g~v~v~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~spd------G~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~ 189 (365)
T 1jof_A 117 FAGYGNVFSVSET-GKLEKNVQNYEYQENTGIHGMVFDPT------ETYLYSADLTANKLWTHRKLASGEVELVGSVDAP 189 (365)
T ss_dssp SCCEEEEEEECTT-CCEEEEEEEEECCTTCCEEEEEECTT------SSEEEEEETTTTEEEEEEECTTSCEEEEEEEECS
T ss_pred CCceEEEEccCCC-CcCcceEeeEEeCCCCcceEEEECCC------CCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecC
Confidence 4678888888752 5443322111 12345667777542 34677765 478999999973333444333332
Q ss_pred --CCcceEEEEEEecCCCCCCCCCCCCCccCCceEEEEEe-cCceEEEEEEeCCCCcc
Q psy14552 208 --PDLAESLVMIEMGASDPTSSDEPAGPVTLGNLYLYVGL-QNGALLRMVVDQTSGDL 262 (290)
Q Consensus 208 --~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~~~~~L~iGl-~dG~l~~~~~d~~~~~l 262 (290)
+.-|+.+.+.. +++ +|+++- .+|.+..|.+|..+|.+
T Consensus 190 ~~g~~p~~~~~sp-----------------dg~-~l~v~~~~~~~v~v~~~~~~~g~~ 229 (365)
T 1jof_A 190 DPGDHPRWVAMHP-----------------TGN-YLYALMEAGNRICEYVIDPATHMP 229 (365)
T ss_dssp STTCCEEEEEECT-----------------TSS-EEEEEETTTTEEEEEEECTTTCCE
T ss_pred CCCCCCCEeEECC-----------------CCC-EEEEEECCCCeEEEEEEeCCCCcE
Confidence 34577775542 233 466655 46777778887766654
No 161
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=46.17 E-value=1.2e+02 Score=27.45 Aligned_cols=86 Identities=14% Similarity=0.028 Sum_probs=54.5
Q ss_pred EEEEeCCCEEEEEEe-C--------CeEEEEEEcCCCCCceeeeeeeecCcceeEEEeeeCCCCCccccEEEEEe--CCC
Q psy14552 118 VRCAVNQRQIVIALQ-G--------GRLIYFEMHPETGILDECSETIQMESEVLCMALSNAPSGEQMSRFLAVGL--ADN 186 (290)
Q Consensus 118 i~as~~~~~l~Val~-~--------~~i~~l~l~~~~~~l~~~~~~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl--~dg 186 (290)
++.+.++.++.|+.+ . +.+.++.+.. . +..+++.++..+-.+.+.+. ..++++.. .++
T Consensus 269 v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t--~---~vv~~i~vg~~p~gi~~s~D------g~~l~va~~~~~~ 337 (368)
T 1mda_H 269 VAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASV--G---QTSGPISNGHDSDAIIAAQD------GASDNYANSAGTE 337 (368)
T ss_dssp EEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSS--C---CEEECCEEEEEECEEEECCS------SSCEEEEEETTTT
T ss_pred eEEcCCCCEEEEEeccccCcccccCCCEEEEECCC--C---eEEEEEECCCCcceEEECCC------CCEEEEEccCCCC
Confidence 444667778888765 2 3555554433 2 22345666777778888643 23344444 389
Q ss_pred eEEEEEeCCCCceeEeeEEecCCcceEEEEE
Q psy14552 187 TVRLISLAPQDCLKQKNLQGLPDLAESLVMI 217 (290)
Q Consensus 187 ~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~~ 217 (290)
.|.++.+. .++.++...++..|..+.+.
T Consensus 338 ~VsVID~~---t~kvv~~I~vg~~P~~i~~~ 365 (368)
T 1mda_H 338 VLDIYDAA---SDQDQSSVELDKGPESLSVQ 365 (368)
T ss_dssp EEEEEESS---SCEEEEECCCCSCCCEEECC
T ss_pred eEEEEECC---CCcEEEEEECCCCCCEEEee
Confidence 99999886 47777767778888877654
No 162
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=45.82 E-value=1.3e+02 Score=25.09 Aligned_cols=133 Identities=14% Similarity=0.108 Sum_probs=63.3
Q ss_pred CceEEEEeeCCeEEEEEecCCCceecCCCceEEEE-EeC-CCEEEEEEeCCeEEEEEEcCCCCCceeeeeeeecCcc-ee
Q psy14552 86 QRQIVIALQGGRLIYFEMHPVSDKKESDKKKIVRC-AVN-QRQIVIALQGGRLIYFEMHPETGILDECSETIQMESE-VL 162 (290)
Q Consensus 86 ~~qv~ial~~g~i~~~~~~~~~~~~~~~~~~Ii~a-s~~-~~~l~Val~~~~i~~l~l~~~~~~l~~~~~~~~l~~e-i~ 162 (290)
+..+.++. +.|..+.-+....|........+.+ ... ...+.++..++.|..+ +++ +.. . .+...+.. +.
T Consensus 187 ~g~l~v~t--~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~~gl~~~--~~~-g~~--~-~~~~~~~~~~~ 258 (330)
T 3hxj_A 187 DGTIYFGS--DKVYAINPDGTEKWNFYAGYWTVTRPAISEDGTIYVTSLDGHLYAI--NPD-GTE--K-WRFKTGKRIES 258 (330)
T ss_dssp TCCEEEES--SSEEEECTTSCEEEEECCSSCCCSCCEECTTSCEEEEETTTEEEEE--CTT-SCE--E-EEEECSSCCCS
T ss_pred CCEEEEEe--CEEEEECCCCcEEEEEccCCcceeceEECCCCeEEEEcCCCeEEEE--CCC-CCE--e-EEeeCCCCccc
Confidence 55566665 5565554111123544322122222 222 3367888777777776 442 321 1 22332222 11
Q ss_pred EEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEecCC-cceEEEEEEecCCCCCCCCCCCCCccCCceEE
Q psy14552 163 CMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPD-LAESLVMIEMGASDPTSSDEPAGPVTLGNLYL 241 (290)
Q Consensus 163 ~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~~-~p~Sl~~~~~~~~~~~~~~~~~~~~~~~~~~L 241 (290)
.+.+. ....|.+|+.+|.+..|. ++... .....++. ...++.. ...-.|
T Consensus 259 ~~~~~-------~~g~l~v~t~~ggl~~~d--~~g~~--~~~~~~~~~~~~~~~~-------------------d~~g~l 308 (330)
T 3hxj_A 259 SPVIG-------NTDTIYFGSYDGHLYAIN--PDGTE--KWNFETGSWIIATPVI-------------------DENGTI 308 (330)
T ss_dssp CCEEC-------TTSCEEEECTTCEEEEEC--TTSCE--EEEEECSSCCCSCCEE-------------------CTTCCE
T ss_pred cceEc-------CCCeEEEecCCCCEEEEC--CCCcE--EEEEEcCCccccceEE-------------------cCCCEE
Confidence 12221 134688999998777665 33222 11222322 1222211 112238
Q ss_pred EEEecCceEEEEEEe
Q psy14552 242 YVGLQNGALLRMVVD 256 (290)
Q Consensus 242 ~iGl~dG~l~~~~~d 256 (290)
++|+.+|.+......
T Consensus 309 ~~gt~~G~~~~~~~~ 323 (330)
T 3hxj_A 309 YFGTRNGKFYALFNL 323 (330)
T ss_dssp EEECTTSCEEEEEC-
T ss_pred EEEcCCCeEEEEecc
Confidence 999999999877653
No 163
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=41.42 E-value=2.3e+02 Score=26.66 Aligned_cols=102 Identities=10% Similarity=0.104 Sum_probs=57.8
Q ss_pred ceEEEEeeCCeEEEEEecCCCc----e--------ec-CCCceEEEEEe-CCCEEEEEEeCCeEEEEEEcCCCCCceeee
Q psy14552 87 RQIVIALQGGRLIYFEMHPVSD----K--------KE-SDKKKIVRCAV-NQRQIVIALQGGRLIYFEMHPETGILDECS 152 (290)
Q Consensus 87 ~qv~ial~~g~i~~~~~~~~~~----~--------~~-~~~~~Ii~as~-~~~~l~Val~~~~i~~l~l~~~~~~l~~~~ 152 (290)
.+++-+..+|.|.+..+..... . .. .....+.+++- ....++.|..|++|+++.+... ......+
T Consensus 226 ~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~~lasgs~DgtV~lWD~~~~-~~~~~~~ 304 (524)
T 2j04_B 226 GCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPTTVVCGFKNGFVAEFDLTDP-EVPSFYD 304 (524)
T ss_dssp CEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSSEEEEEETTSEEEEEETTBC-SSCSEEE
T ss_pred ceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCCeEEEEeCCCEEEEEECCCC-CCceEEe
Confidence 3566666788888877653210 0 00 01122333342 3457888888999999988641 1111111
Q ss_pred eeeecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeC
Q psy14552 153 ETIQMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLA 194 (290)
Q Consensus 153 ~~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~ 194 (290)
..-...|.+++..-.+. +..+++.|..||++.+|.+.
T Consensus 305 --~~H~~~V~sv~~~~s~~---g~~~laS~S~D~tvklWD~~ 341 (524)
T 2j04_B 305 --QVHDSYILSVSTAYSDF---EDTVVSTVAVDGYFYIFNPK 341 (524)
T ss_dssp --ECSSSCEEEEEEECCTT---SCCEEEEEETTSEEEEECGG
T ss_pred --ecccccEEEEEEEcCCC---CCeEEEEeccCCeEEEEECC
Confidence 11245677774221111 12688999999999999985
No 164
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=41.16 E-value=1.9e+02 Score=25.71 Aligned_cols=70 Identities=20% Similarity=0.146 Sum_probs=47.8
Q ss_pred CeEEEEEeCCCCceeEeeEEecCCcceEEEEEEecCCCCCCCCCCCCCccCCceEEEEEe-cCceEEEEEEeCCCCcccc
Q psy14552 186 NTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAGPVTLGNLYLYVGL-QNGALLRMVVDQTSGDLSD 264 (290)
Q Consensus 186 g~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~~~~~L~iGl-~dG~l~~~~~d~~~~~l~~ 264 (290)
+.|.++.+. ..+.++...++..|.++.+.. +++..|+++- ++|.+.-+ |..++++.
T Consensus 298 ~~V~VID~~---t~~vv~~i~~g~~p~~i~~s~-----------------Dg~~~l~v~~~~~~~V~Vi--D~~t~~vv- 354 (373)
T 2mad_H 298 KEVTSVTGL---VGQTSSQISLGHDVDAISVAQ-----------------DGGPDLYALSAGTEVLHIY--DAGAGDQD- 354 (373)
T ss_pred CeEEEEECC---CCEEEEEEECCCCcCeEEECC-----------------CCCeEEEEEcCCCCeEEEE--ECCCCCEE-
Confidence 467776654 456666667788888887764 4665577776 58888655 66677653
Q ss_pred cce-EEecCcceEEEE
Q psy14552 265 NRM-RYLGSRPVKLFK 279 (290)
Q Consensus 265 ~~~-~~lG~~pv~l~~ 279 (290)
+. ..+|..|--+..
T Consensus 355 -~~i~~vG~~P~~~~~ 369 (373)
T 2mad_H 355 -QSTVELGSGPQVLSV 369 (373)
T ss_pred -eeecCCCCCCcEEEE
Confidence 23 468999987754
No 165
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=35.69 E-value=2.6e+02 Score=25.51 Aligned_cols=20 Identities=5% Similarity=0.182 Sum_probs=13.8
Q ss_pred CCEEEEEEeCCeEEEEEEcC
Q psy14552 124 QRQIVIALQGGRLIYFEMHP 143 (290)
Q Consensus 124 ~~~l~Val~~~~i~~l~l~~ 143 (290)
+..++=+..|++|++..+..
T Consensus 193 ~~~LaSgS~D~TIkIWDl~T 212 (356)
T 2w18_A 193 QEALLGTTIMNNIVIWNLKT 212 (356)
T ss_dssp TTEEEEEETTSEEEEEETTT
T ss_pred CceEEEecCCCcEEEEECCC
Confidence 34455556799999988764
No 166
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=30.63 E-value=2.4e+02 Score=23.60 Aligned_cols=29 Identities=14% Similarity=0.312 Sum_probs=20.7
Q ss_pred CceEEEEEecCceEEEEEEeCCCCccccc
Q psy14552 237 GNLYLYVGLQNGALLRMVVDQTSGDLSDN 265 (290)
Q Consensus 237 ~~~~L~iGl~dG~l~~~~~d~~~~~l~~~ 265 (290)
+....++...++.+.+|.+|..+|.++.+
T Consensus 160 g~~lyv~~~~~~~i~~~~~d~~~G~~~~~ 188 (297)
T 3g4e_A 160 HKIFYYIDSLSYSVDAFDYDLQTGQISNR 188 (297)
T ss_dssp SCEEEEEEGGGTEEEEEEECTTTCCEEEE
T ss_pred CCEEEEecCCCCcEEEEeccCCCCcccCc
Confidence 44334567788999999988778877543
No 167
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=28.93 E-value=1.1e+02 Score=31.72 Aligned_cols=85 Identities=18% Similarity=0.181 Sum_probs=49.5
Q ss_pred eecCcce--eEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCc------e-eEeeEEecC-----CcceEEEEEEec
Q psy14552 155 IQMESEV--LCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDC------L-KQKNLQGLP-----DLAESLVMIEMG 220 (290)
Q Consensus 155 ~~l~~ei--~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~------l-~~~~~~~L~-----~~p~Sl~~~~~~ 220 (290)
+.+|..| .|+.+.+..+ .....++|=+.+|.++.+.|+++-+ + ..-.+...+ ..|.-+..+
T Consensus 105 ~~Fp~~i~p~~v~f~d~~~--~~~L~v~vit~~~~Ly~l~l~~~~f~~~~~~~~~~W~~~~~p~~f~~r~p~~l~av--- 179 (950)
T 4gq2_M 105 IHFPSNVMKDGVAFSFSEH--SDTTIIYAITHARVLYYIRLSKTWFQLPDARLDDDWCLCYRPISFLNQKPDLMAAI--- 179 (950)
T ss_dssp EECSSCEEEEEEEEEEETG--GGEEEEEEEETTCCEEEEEECTHHHHSTTCCCCTTSEEEECCGGGTTSCEEEEEEC---
T ss_pred EECCCcccCCceEEeccCC--CCeEEEEEEcCCCCEEEEEECHHHccCccccccccccccccCcCccCCCceEEEEE---
Confidence 3444443 4666654322 1478888889999999999976311 1 000111111 123333222
Q ss_pred CCCCCCCCCCCCCccCCceEEEEEecCceEEEEEEeCCCC
Q psy14552 221 ASDPTSSDEPAGPVTLGNLYLYVGLQNGALLRMVVDQTSG 260 (290)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~L~iGl~dG~l~~~~~d~~~~ 260 (290)
....|+|+|.||-|+|++-+...+
T Consensus 180 ----------------~~~~l~Vsl~dGgLlrl~r~~~~~ 203 (950)
T 4gq2_M 180 ----------------STSEICVSFFNGGLTKIILNPKDA 203 (950)
T ss_dssp ----------------SSSEEEEEETTSCEEEEEEETTTT
T ss_pred ----------------cCCeEEEEECCCCEEEEEecCCCC
Confidence 234599999999999998766554
No 168
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=27.94 E-value=2.6e+02 Score=23.16 Aligned_cols=96 Identities=14% Similarity=0.103 Sum_probs=49.2
Q ss_pred CceEEEEeeCCeEEEEEecCCCceecCCCceEEEE-E-eCCCEEEEEEeCCeEEEEEEcCCCCCceeeeeeeecCcc-ee
Q psy14552 86 QRQIVIALQGGRLIYFEMHPVSDKKESDKKKIVRC-A-VNQRQIVIALQGGRLIYFEMHPETGILDECSETIQMESE-VL 162 (290)
Q Consensus 86 ~~qv~ial~~g~i~~~~~~~~~~~~~~~~~~Ii~a-s-~~~~~l~Val~~~~i~~l~l~~~~~~l~~~~~~~~l~~e-i~ 162 (290)
+..+.++..+|.|..+.-+....|..+....+..+ . .....+.++..++.|..+. + ++.. .....++.. +.
T Consensus 225 ~g~l~v~t~~~gl~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~ggl~~~d--~-~g~~---~~~~~~~~~~~~ 298 (330)
T 3hxj_A 225 DGTIYVTSLDGHLYAINPDGTEKWRFKTGKRIESSPVIGNTDTIYFGSYDGHLYAIN--P-DGTE---KWNFETGSWIIA 298 (330)
T ss_dssp TSCEEEEETTTEEEEECTTSCEEEEEECSSCCCSCCEECTTSCEEEECTTCEEEEEC--T-TSCE---EEEEECSSCCCS
T ss_pred CCeEEEEcCCCeEEEECCCCCEeEEeeCCCCccccceEcCCCeEEEecCCCCEEEEC--C-CCcE---EEEEEcCCcccc
Confidence 45777887777777663211112433222112111 1 2245688887777777664 3 2432 122333322 22
Q ss_pred EEEeeeCCCCCccccEEEEEeCCCeEEEEEeC
Q psy14552 163 CMALSNAPSGEQMSRFLAVGLADNTVRLISLA 194 (290)
Q Consensus 163 ~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~ 194 (290)
++... ....|.+|+.+|.+.+...+
T Consensus 299 ~~~~d-------~~g~l~~gt~~G~~~~~~~~ 323 (330)
T 3hxj_A 299 TPVID-------ENGTIYFGTRNGKFYALFNL 323 (330)
T ss_dssp CCEEC-------TTCCEEEECTTSCEEEEEC-
T ss_pred ceEEc-------CCCEEEEEcCCCeEEEEecc
Confidence 22221 13468899999998877654
No 169
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=27.53 E-value=3e+02 Score=23.71 Aligned_cols=114 Identities=11% Similarity=0.054 Sum_probs=64.0
Q ss_pred CEEEEEEe---CCeEEEEEEcCCCCCceeeeeeeecCcceeEEEeeeCCCCCccccEEEEEeC-CCeEEEEEeCCCCcee
Q psy14552 125 RQIVIALQ---GGRLIYFEMHPETGILDECSETIQMESEVLCMALSNAPSGEQMSRFLAVGLA-DNTVRLISLAPQDCLK 200 (290)
Q Consensus 125 ~~l~Val~---~~~i~~l~l~~~~~~l~~~~~~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~-dg~v~i~~l~~~~~l~ 200 (290)
.++.++.. ++.|+.+.+.. +++ ...+.++...--.-+... ...|.++.| ++.+.+|..+ .++
T Consensus 32 g~Lyvstg~~~~s~v~~iD~~t--g~v---~~~i~l~~~~fgeGi~~~------g~~lyv~t~~~~~v~viD~~---t~~ 97 (266)
T 2iwa_A 32 DTLFESTGLYGRSSVRQVALQT--GKV---ENIHKMDDSYFGEGLTLL------NEKLYQVVWLKNIGFIYDRR---TLS 97 (266)
T ss_dssp TEEEEEECSTTTCEEEEEETTT--CCE---EEEEECCTTCCEEEEEEE------TTEEEEEETTCSEEEEEETT---TTE
T ss_pred CeEEEECCCCCCCEEEEEECCC--CCE---EEEEecCCCcceEEEEEe------CCEEEEEEecCCEEEEEECC---CCc
Confidence 46666653 46777776553 432 234444432211111111 247889998 8888888765 466
Q ss_pred EeeEEecCCcceEEEEEEecCCCCCCCCCCCCCccCCceEEEEEecCceEEEEEEeCCCCcccccceEEecC--cce
Q psy14552 201 QKNLQGLPDLAESLVMIEMGASDPTSSDEPAGPVTLGNLYLYVGLQNGALLRMVVDQTSGDLSDNRMRYLGS--RPV 275 (290)
Q Consensus 201 ~~~~~~L~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~~~~~L~iGl~dG~l~~~~~d~~~~~l~~~~~~~lG~--~pv 275 (290)
.++....+ .|+-..+.. ++. .||+.-+++.+. .+|+.+.+.. +...+|. +|+
T Consensus 98 v~~~i~~g-~~~g~glt~-----------------Dg~-~l~vs~gs~~l~--viD~~t~~v~--~~I~Vg~~~~p~ 151 (266)
T 2iwa_A 98 NIKNFTHQ-MKDGWGLAT-----------------DGK-ILYGSDGTSILY--EIDPHTFKLI--KKHNVKYNGHRV 151 (266)
T ss_dssp EEEEEECC-SSSCCEEEE-----------------CSS-SEEEECSSSEEE--EECTTTCCEE--EEEECEETTEEC
T ss_pred EEEEEECC-CCCeEEEEE-----------------CCC-EEEEECCCCeEE--EEECCCCcEE--EEEEECCCCccc
Confidence 66655555 455555553 222 277777777664 4588776653 4566664 454
No 170
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=26.07 E-value=3.3e+02 Score=23.73 Aligned_cols=104 Identities=9% Similarity=-0.081 Sum_probs=57.4
Q ss_pred CCEEEEEEe-CCeEEEEEEcCCCCCceeeeeeeecCcceeEEEeeeCCCCCccccEEEEEeC-CCeEEEEEeCCCCceeE
Q psy14552 124 QRQIVIALQ-GGRLIYFEMHPETGILDECSETIQMESEVLCMALSNAPSGEQMSRFLAVGLA-DNTVRLISLAPQDCLKQ 201 (290)
Q Consensus 124 ~~~l~Val~-~~~i~~l~l~~~~~~l~~~~~~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~-dg~v~i~~l~~~~~l~~ 201 (290)
+.++.++.. ++.|+.+.+. ++++ ..+. ++.++--.-+... ...|.+..| ++.+.+|..+ .++.
T Consensus 64 ~~~Ly~stG~~g~v~~iD~~--Tgkv---~~~~-l~~~~FgeGit~~------g~~Ly~ltw~~~~v~V~D~~---Tl~~ 128 (268)
T 3nok_A 64 QGHFFESTGHQGTLRQLSLE--SAQP---VWME-RLGNIFAEGLASD------GERLYQLTWTEGLLFTWSGM---PPQR 128 (268)
T ss_dssp TTEEEEEETTTTEEEECCSS--CSSC---SEEE-ECTTCCEEEEEEC------SSCEEEEESSSCEEEEEETT---TTEE
T ss_pred CCEEEEEcCCCCEEEEEECC--CCcE---EeEE-CCCCcceeEEEEe------CCEEEEEEccCCEEEEEECC---cCcE
Confidence 456677654 4566655443 3443 2344 6655422111111 245777788 8888888865 4666
Q ss_pred eeEEecCCcceEEEEEEecCCCCCCCCCCCCCccCCceEEEEEecCceEEEEEEeCCCCcccc
Q psy14552 202 KNLQGLPDLAESLVMIEMGASDPTSSDEPAGPVTLGNLYLYVGLQNGALLRMVVDQTSGDLSD 264 (290)
Q Consensus 202 ~~~~~L~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~~~~~L~iGl~dG~l~~~~~d~~~~~l~~ 264 (290)
++....+..+ ..++. ++. .|++.-+++.+. .+|+.+.++..
T Consensus 129 ~~ti~~~~eG--wGLt~-----------------Dg~-~L~vSdGs~~l~--~iDp~T~~v~~ 169 (268)
T 3nok_A 129 ERTTRYSGEG--WGLCY-----------------WNG-KLVRSDGGTMLT--FHEPDGFALVG 169 (268)
T ss_dssp EEEEECSSCC--CCEEE-----------------ETT-EEEEECSSSEEE--EECTTTCCEEE
T ss_pred EEEEeCCCce--eEEec-----------------CCC-EEEEECCCCEEE--EEcCCCCeEEE
Confidence 6555544332 22332 233 488887777665 35888877643
No 171
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=24.68 E-value=3.3e+02 Score=23.23 Aligned_cols=104 Identities=5% Similarity=0.050 Sum_probs=54.1
Q ss_pred CCCEEEEEEe--CCeEEEEEEcCCCCCceeeeeeeecCcceeEEEeeeCCCCCccccEEEEEeC-C----------CeEE
Q psy14552 123 NQRQIVIALQ--GGRLIYFEMHPETGILDECSETIQMESEVLCMALSNAPSGEQMSRFLAVGLA-D----------NTVR 189 (290)
Q Consensus 123 ~~~~l~Val~--~~~i~~l~l~~~~~~l~~~~~~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~-d----------g~v~ 189 (290)
.+.++.|+.+ ++.|.++.... +.+ .+++.....+..+.+.+ ++ .++++.+ + +.|.
T Consensus 139 ~~~~lyv~~~~~~~~v~viD~~t--~~~---~~~i~~g~~p~~i~~~~--dG-----~l~v~~~~~~~~~~~~~~~~~v~ 206 (328)
T 3dsm_A 139 YGKYVYVNCWSYQNRILKIDTET--DKV---VDELTIGIQPTSLVMDK--YN-----KMWTITDGGYEGSPYGYEAPSLY 206 (328)
T ss_dssp ETTEEEEEECTTCCEEEEEETTT--TEE---EEEEECSSCBCCCEECT--TS-----EEEEEBCCBCTTCSSCBCCCEEE
T ss_pred ECCEEEEEcCCCCCEEEEEECCC--CeE---EEEEEcCCCccceEEcC--CC-----CEEEEECCCccCCccccCCceEE
Confidence 3556777775 56777766543 322 23444445555555532 12 2455554 4 6677
Q ss_pred EEEeCCCCceeEeeEEec--CCcceEEEEEEecCCCCCCCCCCCCCccCCceEEEEEecCceEEEEEEeCCCCccc
Q psy14552 190 LISLAPQDCLKQKNLQGL--PDLAESLVMIEMGASDPTSSDEPAGPVTLGNLYLYVGLQNGALLRMVVDQTSGDLS 263 (290)
Q Consensus 190 i~~l~~~~~l~~~~~~~L--~~~p~Sl~~~~~~~~~~~~~~~~~~~~~~~~~~L~iGl~dG~l~~~~~d~~~~~l~ 263 (290)
++.... .+..+...+ +..|..+++.. ++. +||+.-+ .+. .+|..++.+.
T Consensus 207 ~id~~t---~~v~~~~~~~~g~~p~~la~~~-----------------d~~-~lyv~~~--~v~--~~d~~t~~~~ 257 (328)
T 3dsm_A 207 RIDAET---FTVEKQFKFKLGDWPSEVQLNG-----------------TRD-TLYWINN--DIW--RMPVEADRVP 257 (328)
T ss_dssp EEETTT---TEEEEEEECCTTCCCEEEEECT-----------------TSC-EEEEESS--SEE--EEETTCSSCC
T ss_pred EEECCC---CeEEEEEecCCCCCceeEEEec-----------------CCC-EEEEEcc--EEE--EEECCCCcee
Confidence 666431 233333444 34677776652 122 4666543 444 4566676653
No 172
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=22.48 E-value=3.4e+02 Score=24.42 Aligned_cols=42 Identities=5% Similarity=0.138 Sum_probs=28.7
Q ss_pred ccEEEEEe-CCCeEEEEEeCCCCceeEeeEEecCCcceEEEEE
Q psy14552 176 SRFLAVGL-ADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMI 217 (290)
Q Consensus 176 ~~~l~VGl-~dg~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~~ 217 (290)
..+|.|+- ..+.|.+|.++++..+...+...++..|..+.+-
T Consensus 232 g~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~~g~PDGi~vD 274 (355)
T 3sre_A 232 GKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVD 274 (355)
T ss_dssp SSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEEC
T ss_pred CCEEEEEeCCCCeEEEEEECCCCcEecCEEEeCCCCCceEEEe
Confidence 35666665 5889999999866556665444566677777654
No 173
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=21.28 E-value=3.1e+02 Score=21.69 Aligned_cols=184 Identities=9% Similarity=0.014 Sum_probs=0.0
Q ss_pred CceEEEEeec-CceEEEEeeCCeEEEEEecC-CCceecCCCceE-----EEEEeCCCEEEEEE--eCCeEEEEEEcCCCC
Q psy14552 76 KKKIVRCAVN-QRQIVIALQGGRLIYFEMHP-VSDKKESDKKKI-----VRCAVNQRQIVIAL--QGGRLIYFEMHPETG 146 (290)
Q Consensus 76 ~~~Iv~as~n-~~qv~ial~~g~i~~~~~~~-~~~~~~~~~~~I-----i~as~~~~~l~Val--~~~~i~~l~l~~~~~ 146 (290)
...+..++.+ +...++...++.|..+.++. ...........- ++-+.++..++.+. .++...++.++.+++
T Consensus 41 ~~~v~~~~~spdg~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~ 120 (297)
T 2ojh_A 41 PELFEAPNWSPDGKYLLLNSEGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGG 120 (297)
T ss_dssp SSCCEEEEECTTSSEEEEEETTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCC
T ss_pred CcceEeeEECCCCCEEEEEcCCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCC
Q ss_pred CceeeeeeeecCcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeEEecCCcceEEEEEEecCCCCCC
Q psy14552 147 ILDECSETIQMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTS 226 (290)
Q Consensus 147 ~l~~~~~~~~l~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~~~L~~~p~Sl~~~~~~~~~~~~ 226 (290)
. ...+.....+.++.+.+. +...++++..++.+.+|.++ +.......+...+..+.-..+
T Consensus 121 ~----~~~~~~~~~~~~~~~spd-----g~~l~~~~~~~~~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~------- 180 (297)
T 2ojh_A 121 T----PRLMTKNLPSYWHGWSPD-----GKSFTYCGIRDQVFDIYSMD----IDSGVETRLTHGEGRNDGPDY------- 180 (297)
T ss_dssp C----CEECCSSSSEEEEEECTT-----SSEEEEEEEETTEEEEEEEE----TTTCCEEECCCSSSCEEEEEE-------
T ss_pred c----eEEeecCCCccceEECCC-----CCEEEEEECCCCceEEEEEE----CCCCcceEcccCCCccccceE-------
Q ss_pred CCCCCCCccCCceEEEEEecCceEEEEEEeCCCCcccccceEEecCcceEEEEEEeCCceeec
Q psy14552 227 SDEPAGPVTLGNLYLYVGLQNGALLRMVVDQTSGDLSDNRMRYLGSRPVKLFKIRCQGNEANY 289 (290)
Q Consensus 227 ~~~~~~~~~~~~~~L~iGl~dG~l~~~~~d~~~~~l~~~~~~~lG~~pv~l~~~~~~~~~~~~ 289 (290)
.-++...++.+-.+|..--|.++...+.+ +...-+..++.-..+...|+.-++
T Consensus 181 -------s~dg~~l~~~~~~~~~~~i~~~~~~~~~~---~~~~~~~~~~~~~~~s~dg~~l~~ 233 (297)
T 2ojh_A 181 -------SPDGRWIYFNSSRTGQMQIWRVRVDGSSV---ERITDSAYGDWFPHPSPSGDKVVF 233 (297)
T ss_dssp -------CTTSSEEEEEECTTSSCEEEEEETTSSCE---EECCCCSEEEEEEEECTTSSEEEE
T ss_pred -------CCCCCEEEEEecCCCCccEEEECCCCCCc---EEEecCCcccCCeEECCCCCEEEE
No 174
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=20.31 E-value=4.5e+02 Score=23.21 Aligned_cols=159 Identities=13% Similarity=0.173 Sum_probs=87.5
Q ss_pred CCCCCceEEEEeec-----CceEEEEeeCCeEEEEEecCCCc-----e---ecCCCceEEEE--EeCCCEEEEEEeCCeE
Q psy14552 72 KESDKKKIVRCAVN-----QRQIVIALQGGRLIYFEMHPVSD-----K---KESDKKKIVRC--AVNQRQIVIALQGGRL 136 (290)
Q Consensus 72 ~~~~~~~Iv~as~n-----~~qv~ial~~g~i~~~~~~~~~~-----~---~~~~~~~Ii~a--s~~~~~l~Val~~~~i 136 (290)
+.+++.+|+.+-.- +.+++++..+|-+--..+.+... + ...++-+++.+ ...+..+++.+..+.+
T Consensus 90 ~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~D~lv~~~~~~~~d~ill~T~~G~~ 169 (327)
T 3uc1_A 90 AFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCSAGDDLLLVSANGQS 169 (327)
T ss_dssp TCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTTCCEEEEEEECTTCEEEEEETTSEE
T ss_pred CCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECCCCEEEEEEEecCCCEEEEEECCCeE
Confidence 34567778777543 57899999999887666544211 1 11233345555 3345668888888888
Q ss_pred EEEEEcCCCCCceeee------eeeec--CcceeEEEeeeCCCCCccccEEEEEeCCCeEEEEEeCCCCceeEeeE----
Q psy14552 137 IYFEMHPETGILDECS------ETIQM--ESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNL---- 204 (290)
Q Consensus 137 ~~l~l~~~~~~l~~~~------~~~~l--~~ei~~l~i~~~~~~~~~~~~l~VGl~dg~v~i~~l~~~~~l~~~~~---- 204 (290)
+.|...+ ..+.+.. .-+.+ ..+|..+.. .+ ...++++.+.+|.+.+..+++ +....+
T Consensus 170 ~rf~~~~--~eip~~gr~a~Gv~~i~L~~~d~Vv~~~~--~~----~~~~ll~~T~~G~~Krt~l~e---~~~~~R~~~G 238 (327)
T 3uc1_A 170 IRFSATD--EALRPMGRATSGVQGMRFNIDDRLLSLNV--VR----EGTYLLVATSGGYAKRTAIEE---YPVQGRGGKG 238 (327)
T ss_dssp EEEECCT--TTSCCCCTTSBCEESSCCCTTCCEEEEEE--CC----TTCEEEEEETTSEEEEEEGGG---SCBCCTTSCC
T ss_pred EEEECcc--cccCcCCcCCCCeeeecCCCCCEEEEEEE--EC----CCCEEEEEeCCCcEEEEEHHH---ccccCcCCCc
Confidence 8877651 0121110 00122 234443332 22 135889999999988888753 211111
Q ss_pred -E--ecCC-cceEEEEEEecCCCCCCCCCCCCCccCCceEEEEEecCceEEEEEEeC
Q psy14552 205 -Q--GLPD-LAESLVMIEMGASDPTSSDEPAGPVTLGNLYLYVGLQNGALLRMVVDQ 257 (290)
Q Consensus 205 -~--~L~~-~p~Sl~~~~~~~~~~~~~~~~~~~~~~~~~~L~iGl~dG~l~~~~~d~ 257 (290)
. .+.. -++ +..+... .+...+++.+.+|.++||.++.
T Consensus 239 ~~~~~l~~~~d~-lv~~~~~---------------~~~~~i~l~T~~G~~ir~~~~~ 279 (327)
T 3uc1_A 239 VLTVMYDRRRGR-LVGALIV---------------DDDSELYAVTSGGGVIRTAARQ 279 (327)
T ss_dssp EESSCCCTTTCS-EEEEEEE---------------CTTCEEEEEEGGGCEEEEEGGG
T ss_pred EEEEEecCCCCe-EEEEEEe---------------CCCccEEEEcCCCeEEEEehhh
Confidence 1 1111 122 3222221 1223588999999999998754
Done!