Your job contains 1 sequence.
>psy14552
EFDAYIVVSFSNATLVLSIGETVEEVSGSGFYGTTPTLCCSAMGDNSIVQVYPDGIRHIG
AKNTTWKVSDKKESDKKKIVRCAVNQRQIVIALQGGRLIYFEMHPVSDKKESDKKKIVRC
AVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQMESEVLCMALSNAPSGEQMSRFLA
VGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAGPVTLGNLY
LYVGLQNGALLRMVVDQTSGDLSDNRMRYLGSRPVKLFKIRCQGNEANYK
The BLAST search returned 4 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy14552
(290 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
ZFIN|ZDB-GENE-040426-2901 - symbol:sf3b3 "splicing factor... 526 7.3e-51 2
RGD|1311636 - symbol:Sf3b3 "splicing factor 3b, subunit 3... 522 2.1e-49 1
UNIPROTKB|E9PT66 - symbol:Sf3b3 "Protein Sf3b3" species:1... 522 2.3e-49 1
UNIPROTKB|A0JN52 - symbol:SF3B3 "Splicing factor 3B subun... 522 5.4e-49 1
UNIPROTKB|E2RR33 - symbol:SF3B3 "Uncharacterized protein"... 522 5.4e-49 1
UNIPROTKB|Q15393 - symbol:SF3B3 "Splicing factor 3B subun... 522 5.4e-49 1
MGI|MGI:1289341 - symbol:Sf3b3 "splicing factor 3b, subun... 522 5.4e-49 1
UNIPROTKB|F1P529 - symbol:SF3B3 "Uncharacterized protein"... 522 5.6e-49 1
FB|FBgn0035162 - symbol:CG13900 species:7227 "Drosophila ... 491 1.4e-46 2
WB|WBGene00019323 - symbol:teg-4 species:6239 "Caenorhabd... 372 6.0e-33 1
TAIR|locus:2100616 - symbol:SAP130a "spliceosome-associat... 355 3.9e-31 1
TAIR|locus:2100646 - symbol:SAP130b "spliceosome-associat... 355 3.9e-31 1
DICTYBASE|DDB_G0282569 - symbol:sf3b3 "splicing factor 3B... 224 4.7e-30 2
ASPGD|ASPL0000031473 - symbol:AN5452 species:162425 "Emer... 316 5.6e-27 1
CGD|CAL0004426 - symbol:orf19.5391 species:5476 "Candida ... 173 2.3e-21 2
POMBASE|SPAPJ698.03c - symbol:prp12 "U2 snRNP-associated ... 253 3.0e-20 1
GENEDB_PFALCIPARUM|PFL1680w - symbol:PFL1680w "splicing f... 230 9.5e-18 1
UNIPROTKB|Q8I574 - symbol:PFL1680w "Splicing factor 3b, s... 230 9.5e-18 1
UNIPROTKB|Q6P6Z0 - symbol:ddb1 "DNA damage-binding protei... 141 2.1e-06 1
TAIR|locus:2115909 - symbol:DDB1A "damaged DNA binding pr... 114 2.5e-06 2
UNIPROTKB|A1A4K3 - symbol:DDB1 "DNA damage-binding protei... 138 4.5e-06 1
TAIR|locus:2127368 - symbol:DDB1B "damaged DNA binding pr... 115 5.1e-06 2
UNIPROTKB|F1RIE2 - symbol:DDB1 "Uncharacterized protein" ... 136 7.6e-06 1
UNIPROTKB|F5H775 - symbol:DDB1 "DNA damage-binding protei... 125 9.5e-06 1
UNIPROTKB|F5H6C5 - symbol:DDB1 "DNA damage-binding protei... 125 1.4e-05 1
FB|FBgn0260962 - symbol:pic "piccolo" species:7227 "Droso... 95 2.8e-05 2
DICTYBASE|DDB_G0286013 - symbol:repE "UV-damaged DNA bind... 98 0.00012 2
UNIPROTKB|F5GY55 - symbol:DDB1 "Uncharacterized protein" ... 125 0.00013 1
UNIPROTKB|Q16531 - symbol:DDB1 "DNA damage-binding protei... 125 0.00013 1
UNIPROTKB|P33194 - symbol:DDB1 "DNA damage-binding protei... 125 0.00013 1
UNIPROTKB|Q5R649 - symbol:DDB1 "DNA damage-binding protei... 125 0.00013 1
UNIPROTKB|J9NVR7 - symbol:DDB1 "Uncharacterized protein" ... 124 0.00016 1
UNIPROTKB|E2R9E3 - symbol:DDB1 "Uncharacterized protein" ... 124 0.00017 1
MGI|MGI:1202384 - symbol:Ddb1 "damage specific DNA bindin... 124 0.00017 1
SGD|S000004513 - symbol:RSE1 "Protein involved in pre-mRN... 123 0.00027 1
RGD|621889 - symbol:Ddb1 "damage-specific DNA binding pro... 122 0.00028 1
UNIPROTKB|F1NVV3 - symbol:DDB1 "DNA damage-binding protei... 118 0.00055 2
UNIPROTKB|F1P4I8 - symbol:DDB1 "DNA damage-binding protei... 118 0.00055 2
UNIPROTKB|F1NVV2 - symbol:DDB1 "DNA damage-binding protei... 118 0.00055 2
UNIPROTKB|Q805F9 - symbol:DDB1 "DNA damage-binding protei... 118 0.00057 2
ZFIN|ZDB-GENE-040709-2 - symbol:cpsf1 "cleavage and polya... 119 0.00081 1
>ZFIN|ZDB-GENE-040426-2901 [details] [associations]
symbol:sf3b3 "splicing factor 3b, subunit 3"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
InterPro:IPR017986 InterPro:IPR004871 InterPro:IPR015943
Pfam:PF03178 ZFIN:ZDB-GENE-040426-2901 GO:GO:0008380
Gene3D:2.130.10.10 SUPFAM:SSF50978 GO:GO:0006397 GO:GO:0005681
GO:GO:0003676 eggNOG:NOG247734 GeneTree:ENSGT00530000063396
KO:K12830 HOGENOM:HOG000216677 OMA:FDTIPVA CTD:23450
HOVERGEN:HBG093942 OrthoDB:EOG4RV2QJ EMBL:BX784024 EMBL:BC047171
IPI:IPI00508652 RefSeq:NP_998668.1 RefSeq:XP_002667683.2
UniGene:Dr.76176 STRING:Q1LVE8 PRIDE:Q1LVE8
Ensembl:ENSDART00000008310 Ensembl:ENSDART00000122831
Ensembl:ENSDART00000129666 Ensembl:ENSDART00000147743
GeneID:100334114 GeneID:406824 KEGG:dre:100334114 KEGG:dre:406824
InParanoid:Q1LVE8 NextBio:20818331 Bgee:Q1LVE8 Uniprot:Q1LVE8
Length = 1217
Score = 526 (190.2 bits), Expect = 7.3e-51, Sum P(2) = 7.3e-51
Identities = 107/182 (58%), Positives = 134/182 (73%)
Query: 106 VSDKKESDKKKIVRCAVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQMESEVLCMA 165
V++ K KK I+RCAVNQRQ+VIAL GG L+YFEM P +G L+E +E +M ++V+CM+
Sbjct: 533 VNEWKTPGKKTIIRCAVNQRQVVIALTGGELVYFEMDP-SGQLNEYTERKEMSADVVCMS 591
Query: 166 LSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPT 225
L+N P GEQ SRFLAVGL DNTVR+ISL P DCL+ ++Q LP ESL ++EMG +
Sbjct: 592 LANVPPGEQRSRFLAVGLVDNTVRIISLDPSDCLQPLSMQALPAQPESLCIVEMGGVE-- 649
Query: 226 SSDEPAGPVTLGNLYLYVGLQNGALLRMVVDQTSGDLSDNRMRYLGSRPVKLFKIRCQGN 285
DE T+G LYL +GLQNG LLR V+D +GDLSD R RYLGSRPVKLF++R QG
Sbjct: 650 KQDELGEKGTIGFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRVRMQGQ 709
Query: 286 EA 287
EA
Sbjct: 710 EA 711
Score = 347 (127.2 bits), Expect = 2.8e-30, P = 2.8e-30
Identities = 71/116 (61%), Positives = 83/116 (71%)
Query: 1 EFDAYIVVSFSNATLVLSIGETVEEVSGSGFYGTTPTLCCSAMGDNSIVQVYPDGIRHIG 60
EFDAYI+VSF NATLVLSIGETVEEV+ SGF GTTPTL CS +G++++VQVYPDGIRHI
Sbjct: 469 EFDAYIIVSFVNATLVLSIGETVEEVTDSGFLGTTPTLSCSLLGEDALVQVYPDGIRHIR 528
Query: 61 AKNTTWXXXXXXXXXXXXIVRCAVNQRQIVIALQGGRLIYFEMHPVSDKKESDKKK 116
A I+RCAVNQRQ+VIAL GG L+YFEM P E ++K
Sbjct: 529 ADKRV---NEWKTPGKKTIIRCAVNQRQVVIALTGGELVYFEMDPSGQLNEYTERK 581
Score = 42 (19.8 bits), Expect = 7.3e-51, Sum P(2) = 7.3e-51
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 89 IVIALQGGRLIYFEMHP 105
+V+ GR++ E HP
Sbjct: 78 VVVGSDSGRIVILEYHP 94
>RGD|1311636 [details] [associations]
symbol:Sf3b3 "splicing factor 3b, subunit 3" species:10116
"Rattus norvegicus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005689
"U12-type spliceosomal complex" evidence=ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=ISO] InterPro:IPR004871
Pfam:PF03178 RGD:1311636 GO:GO:0005634 GO:GO:0003676
IPI:IPI00563335 PRIDE:F1LSZ9 Ensembl:ENSRNOT00000044193
UCSC:RGD:1311636 ArrayExpress:F1LSZ9 Uniprot:F1LSZ9
Length = 902
Score = 522 (188.8 bits), Expect = 2.1e-49, P = 2.1e-49
Identities = 106/182 (58%), Positives = 135/182 (74%)
Query: 106 VSDKKESDKKKIVRCAVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQMESEVLCMA 165
V++ K KK IV+CAVNQRQ+VIAL GG L+YFEM P +G L+E +E +M ++V+CM+
Sbjct: 313 VNEWKTPGKKTIVKCAVNQRQVVIALTGGELVYFEMDP-SGQLNEYTERKEMSADVVCMS 371
Query: 166 LSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPT 225
L+N P GEQ SRFLAVGL DNTVR+ISL P DCL+ ++Q LP ESL ++EMG ++
Sbjct: 372 LANVPPGEQRSRFLAVGLVDNTVRIISLDPSDCLQPLSMQALPAQPESLCIVEMGGTE-- 429
Query: 226 SSDEPAGPVTLGNLYLYVGLQNGALLRMVVDQTSGDLSDNRMRYLGSRPVKLFKIRCQGN 285
DE ++G LYL +GLQNG LLR V+D +GDLSD R RYLGSRPVKLF++R QG
Sbjct: 430 KQDELGERGSIGFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRVRMQGQ 489
Query: 286 EA 287
EA
Sbjct: 490 EA 491
Score = 349 (127.9 bits), Expect = 9.9e-31, P = 9.9e-31
Identities = 72/116 (62%), Positives = 83/116 (71%)
Query: 1 EFDAYIVVSFSNATLVLSIGETVEEVSGSGFYGTTPTLCCSAMGDNSIVQVYPDGIRHIG 60
EFDAYI+VSF NATLVLSIGETVEEV+ SGF GTTPTL CS +GD+++VQVYPDGIRHI
Sbjct: 249 EFDAYIIVSFVNATLVLSIGETVEEVTDSGFLGTTPTLSCSLLGDDALVQVYPDGIRHIR 308
Query: 61 AKNTTWXXXXXXXXXXXXIVRCAVNQRQIVIALQGGRLIYFEMHPVSDKKESDKKK 116
A IV+CAVNQRQ+VIAL GG L+YFEM P E ++K
Sbjct: 309 ADKRV---NEWKTPGKKTIVKCAVNQRQVVIALTGGELVYFEMDPSGQLNEYTERK 361
>UNIPROTKB|E9PT66 [details] [associations]
symbol:Sf3b3 "Protein Sf3b3" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR004871 Pfam:PF03178
RGD:1311636 GO:GO:0003676 GO:GO:0071013
GeneTree:ENSGT00530000063396 GO:GO:0005689 IPI:IPI00958853
Ensembl:ENSRNOT00000023854 ArrayExpress:E9PT66 Uniprot:E9PT66
Length = 920
Score = 522 (188.8 bits), Expect = 2.3e-49, P = 2.3e-49
Identities = 106/182 (58%), Positives = 135/182 (74%)
Query: 106 VSDKKESDKKKIVRCAVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQMESEVLCMA 165
V++ K KK IV+CAVNQRQ+VIAL GG L+YFEM P +G L+E +E +M ++V+CM+
Sbjct: 236 VNEWKTPGKKTIVKCAVNQRQVVIALTGGELVYFEMDP-SGQLNEYTERKEMSADVVCMS 294
Query: 166 LSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPT 225
L+N P GEQ SRFLAVGL DNTVR+ISL P DCL+ ++Q LP ESL ++EMG ++
Sbjct: 295 LANVPPGEQRSRFLAVGLVDNTVRIISLDPSDCLQPLSMQALPAQPESLCIVEMGGTE-- 352
Query: 226 SSDEPAGPVTLGNLYLYVGLQNGALLRMVVDQTSGDLSDNRMRYLGSRPVKLFKIRCQGN 285
DE ++G LYL +GLQNG LLR V+D +GDLSD R RYLGSRPVKLF++R QG
Sbjct: 353 KQDELGERGSIGFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRVRMQGQ 412
Query: 286 EA 287
EA
Sbjct: 413 EA 414
Score = 349 (127.9 bits), Expect = 1.0e-30, P = 1.0e-30
Identities = 72/116 (62%), Positives = 83/116 (71%)
Query: 1 EFDAYIVVSFSNATLVLSIGETVEEVSGSGFYGTTPTLCCSAMGDNSIVQVYPDGIRHIG 60
EFDAYI+VSF NATLVLSIGETVEEV+ SGF GTTPTL CS +GD+++VQVYPDGIRHI
Sbjct: 172 EFDAYIIVSFVNATLVLSIGETVEEVTDSGFLGTTPTLSCSLLGDDALVQVYPDGIRHIR 231
Query: 61 AKNTTWXXXXXXXXXXXXIVRCAVNQRQIVIALQGGRLIYFEMHPVSDKKESDKKK 116
A IV+CAVNQRQ+VIAL GG L+YFEM P E ++K
Sbjct: 232 ADKRV---NEWKTPGKKTIVKCAVNQRQVVIALTGGELVYFEMDPSGQLNEYTERK 284
>UNIPROTKB|A0JN52 [details] [associations]
symbol:SF3B3 "Splicing factor 3B subunit 3" species:9913
"Bos taurus" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR004871 Pfam:PF03178 GO:GO:0008380
GO:GO:0006397 GO:GO:0003676 GO:GO:0071013 eggNOG:NOG247734
GeneTree:ENSGT00530000063396 GO:GO:0005689 KO:K12830
HOGENOM:HOG000216677 OMA:FDTIPVA EMBL:BC126518 IPI:IPI00690059
RefSeq:NP_001071319.1 UniGene:Bt.7895 ProteinModelPortal:A0JN52
STRING:A0JN52 PRIDE:A0JN52 Ensembl:ENSBTAT00000014050 GeneID:504962
KEGG:bta:504962 CTD:23450 HOVERGEN:HBG093942 InParanoid:A0JN52
OrthoDB:EOG4RV2QJ BioCyc:CATTLE:504962-MONOMER BindingDB:A0JN52
NextBio:20866909 ArrayExpress:A0JN52 Uniprot:A0JN52
Length = 1217
Score = 522 (188.8 bits), Expect = 5.4e-49, P = 5.4e-49
Identities = 106/182 (58%), Positives = 135/182 (74%)
Query: 106 VSDKKESDKKKIVRCAVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQMESEVLCMA 165
V++ K KK IV+CAVNQRQ+VIAL GG L+YFEM P +G L+E +E +M ++V+CM+
Sbjct: 533 VNEWKTPGKKTIVKCAVNQRQVVIALTGGELVYFEMDP-SGQLNEYTERKEMSADVVCMS 591
Query: 166 LSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPT 225
L+N P GEQ SRFLAVGL DNTVR+ISL P DCL+ ++Q LP ESL ++EMG ++
Sbjct: 592 LANVPPGEQRSRFLAVGLVDNTVRIISLDPSDCLQPLSMQALPAQPESLCIVEMGGTE-- 649
Query: 226 SSDEPAGPVTLGNLYLYVGLQNGALLRMVVDQTSGDLSDNRMRYLGSRPVKLFKIRCQGN 285
DE ++G LYL +GLQNG LLR V+D +GDLSD R RYLGSRPVKLF++R QG
Sbjct: 650 KQDELGERGSIGFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRVRMQGQ 709
Query: 286 EA 287
EA
Sbjct: 710 EA 711
Score = 349 (127.9 bits), Expect = 1.7e-30, P = 1.7e-30
Identities = 72/116 (62%), Positives = 83/116 (71%)
Query: 1 EFDAYIVVSFSNATLVLSIGETVEEVSGSGFYGTTPTLCCSAMGDNSIVQVYPDGIRHIG 60
EFDAYI+VSF NATLVLSIGETVEEV+ SGF GTTPTL CS +GD+++VQVYPDGIRHI
Sbjct: 469 EFDAYIIVSFVNATLVLSIGETVEEVTDSGFLGTTPTLSCSLLGDDALVQVYPDGIRHIR 528
Query: 61 AKNTTWXXXXXXXXXXXXIVRCAVNQRQIVIALQGGRLIYFEMHPVSDKKESDKKK 116
A IV+CAVNQRQ+VIAL GG L+YFEM P E ++K
Sbjct: 529 ADKRV---NEWKTPGKKTIVKCAVNQRQVVIALTGGELVYFEMDPSGQLNEYTERK 581
>UNIPROTKB|E2RR33 [details] [associations]
symbol:SF3B3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR004871 Pfam:PF03178 GO:GO:0003676 GO:GO:0071013
GeneTree:ENSGT00530000063396 GO:GO:0005689 KO:K12830 OMA:FDTIPVA
CTD:23450 EMBL:AAEX03004077 RefSeq:XP_536791.2
Ensembl:ENSCAFT00000032086 GeneID:479659 KEGG:cfa:479659
Uniprot:E2RR33
Length = 1217
Score = 522 (188.8 bits), Expect = 5.4e-49, P = 5.4e-49
Identities = 106/182 (58%), Positives = 135/182 (74%)
Query: 106 VSDKKESDKKKIVRCAVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQMESEVLCMA 165
V++ K KK IV+CAVNQRQ+VIAL GG L+YFEM P +G L+E +E +M ++V+CM+
Sbjct: 533 VNEWKTPGKKTIVKCAVNQRQVVIALTGGELVYFEMDP-SGQLNEYTERKEMSADVVCMS 591
Query: 166 LSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPT 225
L+N P GEQ SRFLAVGL DNTVR+ISL P DCL+ ++Q LP ESL ++EMG ++
Sbjct: 592 LANVPPGEQRSRFLAVGLVDNTVRIISLDPSDCLQPLSMQALPAQPESLCIVEMGGTE-- 649
Query: 226 SSDEPAGPVTLGNLYLYVGLQNGALLRMVVDQTSGDLSDNRMRYLGSRPVKLFKIRCQGN 285
DE ++G LYL +GLQNG LLR V+D +GDLSD R RYLGSRPVKLF++R QG
Sbjct: 650 KQDELGERGSIGFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRVRMQGQ 709
Query: 286 EA 287
EA
Sbjct: 710 EA 711
Score = 349 (127.9 bits), Expect = 1.7e-30, P = 1.7e-30
Identities = 72/116 (62%), Positives = 83/116 (71%)
Query: 1 EFDAYIVVSFSNATLVLSIGETVEEVSGSGFYGTTPTLCCSAMGDNSIVQVYPDGIRHIG 60
EFDAYI+VSF NATLVLSIGETVEEV+ SGF GTTPTL CS +GD+++VQVYPDGIRHI
Sbjct: 469 EFDAYIIVSFVNATLVLSIGETVEEVTDSGFLGTTPTLSCSLLGDDALVQVYPDGIRHIR 528
Query: 61 AKNTTWXXXXXXXXXXXXIVRCAVNQRQIVIALQGGRLIYFEMHPVSDKKESDKKK 116
A IV+CAVNQRQ+VIAL GG L+YFEM P E ++K
Sbjct: 529 ADKRV---NEWKTPGKKTIVKCAVNQRQVVIALTGGELVYFEMDPSGQLNEYTERK 581
>UNIPROTKB|Q15393 [details] [associations]
symbol:SF3B3 "Splicing factor 3B subunit 3" species:9606
"Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000375 "RNA splicing, via transesterification reactions"
evidence=TAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0005689 "U12-type spliceosomal complex"
evidence=IDA] [GO:0030532 "small nuclear ribonucleoprotein complex"
evidence=TAS] [GO:0005681 "spliceosomal complex" evidence=TAS]
[GO:0006397 "mRNA processing" evidence=TAS] [GO:0006461 "protein
complex assembly" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] Reactome:REACT_71
InterPro:IPR004871 Pfam:PF03178 GO:GO:0005654 GO:GO:0006461
Reactome:REACT_1675 GO:GO:0003676 GO:GO:0000398 GO:GO:0071013
GO:GO:0030532 eggNOG:NOG247734 GO:GO:0005689 KO:K12830
HOGENOM:HOG000216677 OMA:FDTIPVA CTD:23450 HOVERGEN:HBG093942
OrthoDB:EOG4RV2QJ EMBL:AJ001443 EMBL:D87686 EMBL:D13642
EMBL:BC000463 EMBL:BC003146 EMBL:BC009780 EMBL:BC068974
EMBL:AL110251 IPI:IPI00179138 IPI:IPI00300371 IPI:IPI00828110
PIR:T14779 RefSeq:NP_036558.3 UniGene:Hs.514435
ProteinModelPortal:Q15393 DIP:DIP-28152N IntAct:Q15393
MINT:MINT-1402891 STRING:Q15393 PhosphoSite:Q15393 DMDM:116242787
PaxDb:Q15393 PeptideAtlas:Q15393 PRIDE:Q15393
Ensembl:ENST00000302516 GeneID:23450 KEGG:hsa:23450 UCSC:uc002ezf.3
GeneCards:GC16P070557 HGNC:HGNC:10770 HPA:HPA042986 MIM:605592
neXtProt:NX_Q15393 PharmGKB:PA35688 InParanoid:Q15393
PhylomeDB:Q15393 BindingDB:Q15393 ChEMBL:CHEMBL1250378
GenomeRNAi:23450 NextBio:45731 ArrayExpress:Q15393 Bgee:Q15393
CleanEx:HS_SAP130 CleanEx:HS_SF3B3 Genevestigator:Q15393
GermOnline:ENSG00000189091 Uniprot:Q15393
Length = 1217
Score = 522 (188.8 bits), Expect = 5.4e-49, P = 5.4e-49
Identities = 106/182 (58%), Positives = 135/182 (74%)
Query: 106 VSDKKESDKKKIVRCAVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQMESEVLCMA 165
V++ K KK IV+CAVNQRQ+VIAL GG L+YFEM P +G L+E +E +M ++V+CM+
Sbjct: 533 VNEWKTPGKKTIVKCAVNQRQVVIALTGGELVYFEMDP-SGQLNEYTERKEMSADVVCMS 591
Query: 166 LSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPT 225
L+N P GEQ SRFLAVGL DNTVR+ISL P DCL+ ++Q LP ESL ++EMG ++
Sbjct: 592 LANVPPGEQRSRFLAVGLVDNTVRIISLDPSDCLQPLSMQALPAQPESLCIVEMGGTE-- 649
Query: 226 SSDEPAGPVTLGNLYLYVGLQNGALLRMVVDQTSGDLSDNRMRYLGSRPVKLFKIRCQGN 285
DE ++G LYL +GLQNG LLR V+D +GDLSD R RYLGSRPVKLF++R QG
Sbjct: 650 KQDELGERGSIGFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRVRMQGQ 709
Query: 286 EA 287
EA
Sbjct: 710 EA 711
Score = 349 (127.9 bits), Expect = 1.7e-30, P = 1.7e-30
Identities = 72/116 (62%), Positives = 83/116 (71%)
Query: 1 EFDAYIVVSFSNATLVLSIGETVEEVSGSGFYGTTPTLCCSAMGDNSIVQVYPDGIRHIG 60
EFDAYI+VSF NATLVLSIGETVEEV+ SGF GTTPTL CS +GD+++VQVYPDGIRHI
Sbjct: 469 EFDAYIIVSFVNATLVLSIGETVEEVTDSGFLGTTPTLSCSLLGDDALVQVYPDGIRHIR 528
Query: 61 AKNTTWXXXXXXXXXXXXIVRCAVNQRQIVIALQGGRLIYFEMHPVSDKKESDKKK 116
A IV+CAVNQRQ+VIAL GG L+YFEM P E ++K
Sbjct: 529 ADKRV---NEWKTPGKKTIVKCAVNQRQVVIALTGGELVYFEMDPSGQLNEYTERK 581
>MGI|MGI:1289341 [details] [associations]
symbol:Sf3b3 "splicing factor 3b, subunit 3" species:10090
"Mus musculus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0005689 "U12-type spliceosomal complex"
evidence=ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=ISO] InterPro:IPR004871 Pfam:PF03178
MGI:MGI:1289341 GO:GO:0008380 GO:GO:0006397 GO:GO:0003676
GO:GO:0071013 eggNOG:NOG247734 GeneTree:ENSGT00530000063396
HSSP:Q16531 GO:GO:0005689 KO:K12830 HOGENOM:HOG000216677
OMA:FDTIPVA CTD:23450 HOVERGEN:HBG093942 OrthoDB:EOG4RV2QJ
EMBL:AK085705 EMBL:AK088268 EMBL:AK129035 EMBL:AK147914
EMBL:BC011412 EMBL:BC031197 EMBL:BC042580 IPI:IPI00122011
IPI:IPI00625759 RefSeq:NP_598714.1 UniGene:Mm.236123
ProteinModelPortal:Q921M3 IntAct:Q921M3 STRING:Q921M3
PhosphoSite:Q921M3 PaxDb:Q921M3 PRIDE:Q921M3
Ensembl:ENSMUST00000042012 GeneID:101943 KEGG:mmu:101943
UCSC:uc009nlc.1 InParanoid:Q921M3 NextBio:355190 Bgee:Q921M3
CleanEx:MM_SF3B3 Genevestigator:Q921M3 Uniprot:Q921M3
Length = 1217
Score = 522 (188.8 bits), Expect = 5.4e-49, P = 5.4e-49
Identities = 106/182 (58%), Positives = 135/182 (74%)
Query: 106 VSDKKESDKKKIVRCAVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQMESEVLCMA 165
V++ K KK IV+CAVNQRQ+VIAL GG L+YFEM P +G L+E +E +M ++V+CM+
Sbjct: 533 VNEWKTPGKKTIVKCAVNQRQVVIALTGGELVYFEMDP-SGQLNEYTERKEMSADVVCMS 591
Query: 166 LSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPT 225
L+N P GEQ SRFLAVGL DNTVR+ISL P DCL+ ++Q LP ESL ++EMG ++
Sbjct: 592 LANVPPGEQRSRFLAVGLVDNTVRIISLDPSDCLQPLSMQALPAQPESLCIVEMGGTE-- 649
Query: 226 SSDEPAGPVTLGNLYLYVGLQNGALLRMVVDQTSGDLSDNRMRYLGSRPVKLFKIRCQGN 285
DE ++G LYL +GLQNG LLR V+D +GDLSD R RYLGSRPVKLF++R QG
Sbjct: 650 KQDELGERGSIGFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRVRMQGQ 709
Query: 286 EA 287
EA
Sbjct: 710 EA 711
Score = 349 (127.9 bits), Expect = 1.7e-30, P = 1.7e-30
Identities = 72/116 (62%), Positives = 83/116 (71%)
Query: 1 EFDAYIVVSFSNATLVLSIGETVEEVSGSGFYGTTPTLCCSAMGDNSIVQVYPDGIRHIG 60
EFDAYI+VSF NATLVLSIGETVEEV+ SGF GTTPTL CS +GD+++VQVYPDGIRHI
Sbjct: 469 EFDAYIIVSFVNATLVLSIGETVEEVTDSGFLGTTPTLSCSLLGDDALVQVYPDGIRHIR 528
Query: 61 AKNTTWXXXXXXXXXXXXIVRCAVNQRQIVIALQGGRLIYFEMHPVSDKKESDKKK 116
A IV+CAVNQRQ+VIAL GG L+YFEM P E ++K
Sbjct: 529 ADKRV---NEWKTPGKKTIVKCAVNQRQVVIALTGGELVYFEMDPSGQLNEYTERK 581
>UNIPROTKB|F1P529 [details] [associations]
symbol:SF3B3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005689 "U12-type spliceosomal complex" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
InterPro:IPR004871 Pfam:PF03178 GO:GO:0003676 GO:GO:0071013
GeneTree:ENSGT00530000063396 GO:GO:0005689 OMA:FDTIPVA
EMBL:AADN02051593 EMBL:AADN02051594 IPI:IPI00576925
Ensembl:ENSGALT00000003987 ArrayExpress:F1P529 Uniprot:F1P529
Length = 1228
Score = 522 (188.8 bits), Expect = 5.6e-49, P = 5.6e-49
Identities = 106/182 (58%), Positives = 135/182 (74%)
Query: 106 VSDKKESDKKKIVRCAVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQMESEVLCMA 165
V++ K KK IV+CAVNQRQ+VIAL GG L+YFEM P +G L+E +E +M ++V+CM+
Sbjct: 533 VNEWKTPGKKTIVKCAVNQRQVVIALTGGELVYFEMDP-SGQLNEYTERKEMSADVVCMS 591
Query: 166 LSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPT 225
L+N P GEQ SRFLAVGL DNTVR+ISL P DCL+ ++Q LP ESL ++EMG ++
Sbjct: 592 LANVPPGEQRSRFLAVGLVDNTVRIISLDPSDCLQPLSMQALPAQPESLCIVEMGGTE-- 649
Query: 226 SSDEPAGPVTLGNLYLYVGLQNGALLRMVVDQTSGDLSDNRMRYLGSRPVKLFKIRCQGN 285
DE ++G LYL +GLQNG LLR V+D +GDLSD R RYLGSRPVKLF++R QG
Sbjct: 650 KQDELGERGSIGFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRVRMQGQ 709
Query: 286 EA 287
EA
Sbjct: 710 EA 711
Score = 349 (127.9 bits), Expect = 1.7e-30, P = 1.7e-30
Identities = 72/116 (62%), Positives = 83/116 (71%)
Query: 1 EFDAYIVVSFSNATLVLSIGETVEEVSGSGFYGTTPTLCCSAMGDNSIVQVYPDGIRHIG 60
EFDAYI+VSF NATLVLSIGETVEEV+ SGF GTTPTL CS +GD+++VQVYPDGIRHI
Sbjct: 469 EFDAYIIVSFVNATLVLSIGETVEEVTDSGFLGTTPTLSCSLLGDDALVQVYPDGIRHIR 528
Query: 61 AKNTTWXXXXXXXXXXXXIVRCAVNQRQIVIALQGGRLIYFEMHPVSDKKESDKKK 116
A IV+CAVNQRQ+VIAL GG L+YFEM P E ++K
Sbjct: 529 ADKRV---NEWKTPGKKTIVKCAVNQRQVVIALTGGELVYFEMDPSGQLNEYTERK 581
>FB|FBgn0035162 [details] [associations]
symbol:CG13900 species:7227 "Drosophila melanogaster"
[GO:0003684 "damaged DNA binding" evidence=ISS] [GO:0030532 "small
nuclear ribonucleoprotein complex" evidence=ISS] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;ISS] [GO:0005686 "U2 snRNP"
evidence=ISS;IDA] [GO:0007052 "mitotic spindle organization"
evidence=IMP] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
[GO:0022008 "neurogenesis" evidence=IMP] InterPro:IPR004871
InterPro:IPR015943 Pfam:PF03178 GO:GO:0007052 GO:GO:0022008
Gene3D:2.130.10.10 GO:GO:0003676 GO:GO:0071011 GO:GO:0000398
GO:GO:0071013 GO:GO:0005686 eggNOG:NOG247734 EMBL:BT021338
ProteinModelPortal:Q5BI86 SMR:Q5BI86 STRING:Q5BI86 PaxDb:Q5BI86
PRIDE:Q5BI86 FlyBase:FBgn0035162 InParanoid:Q5BI86
OrthoDB:EOG4B5MM0 ArrayExpress:Q5BI86 Bgee:Q5BI86 Uniprot:Q5BI86
Length = 1227
Score = 491 (177.9 bits), Expect = 1.4e-46, Sum P(2) = 1.4e-46
Identities = 103/189 (54%), Positives = 132/189 (69%)
Query: 106 VSDKKESDKKKIVRCAVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQMESEVLCMA 165
V++ K KK I +CAVNQRQ+VI L G L+YFEM P TG L+E +E +M +E++CMA
Sbjct: 533 VNEWKAPGKKSITKCAVNQRQVVITLSGRELVYFEMDP-TGELNEYTERSEMPAEIMCMA 591
Query: 166 LSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPT 225
L P GEQ S FLAVGLADNTVR++SL P +CL ++Q LP AESL ++EMG ++ T
Sbjct: 592 LGTVPEGEQRSWFLAVGLADNTVRILSLDPNNCLTPCSMQALPSPAESLCLVEMGHTEST 651
Query: 226 SS---DEPAGPVTLGN----LYLYVGLQNGALLRMVVDQTSGDLSDNRMRYLGSRPVKLF 278
+ D+ A GN +YL +GL NG LLR V+D SGDL+D R RYLGSRPVKLF
Sbjct: 652 TQGGLDDDAPAQRSGNNKGTIYLNIGLSNGVLLRTVLDPVSGDLADTRTRYLGSRPVKLF 711
Query: 279 KIRCQGNEA 287
+I+ QG+EA
Sbjct: 712 RIKMQGSEA 720
Score = 342 (125.4 bits), Expect = 9.7e-30, P = 9.7e-30
Identities = 68/111 (61%), Positives = 80/111 (72%)
Query: 1 EFDAYIVVSFSNATLVLSIGETVEEVSGSGFYGTTPTLCCSAMGDNSIVQVYPDGIRHIG 60
EFDAYI+VSF NATLVLSIGETVEEV+ SGF GTTPTLCC+A+GD+++VQVYPDGIRHI
Sbjct: 469 EFDAYIIVSFVNATLVLSIGETVEEVTDSGFLGTTPTLCCAALGDDALVQVYPDGIRHIR 528
Query: 61 AKNTTWXXXXXXXXXXXXIVRCAVNQRQIVIALQGGRLIYFEMHPVSDKKE 111
+ I +CAVNQRQ+VI L G L+YFEM P + E
Sbjct: 529 SDKRV---NEWKAPGKKSITKCAVNQRQVVITLSGRELVYFEMDPTGELNE 576
Score = 37 (18.1 bits), Expect = 1.4e-46, Sum P(2) = 1.4e-46
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 89 IVIALQGGRLIYFEMHPVSDKKE 111
IV+ GR++ E +P + E
Sbjct: 78 IVVGSDSGRIVILEYNPSKNALE 100
>WB|WBGene00019323 [details] [associations]
symbol:teg-4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0040035 "hermaphrodite
genitalia development" evidence=IMP] [GO:0009790 "embryo
development" evidence=IMP] [GO:0001703 "gastrulation with mouth
forming first" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0042127
"regulation of cell proliferation" evidence=IMP] [GO:0040020
"regulation of meiosis" evidence=IMP] [GO:0008406 "gonad
development" evidence=IMP] [GO:0016477 "cell migration"
evidence=IMP] [GO:0007281 "germ cell development" evidence=IMP]
InterPro:IPR017986 InterPro:IPR004871 InterPro:IPR015943
Pfam:PF03178 GO:GO:0005634 GO:GO:0009792 GO:GO:0002009
GO:GO:0040007 GO:GO:0016477 GO:GO:0008406 GO:GO:0002119
Gene3D:2.130.10.10 SUPFAM:SSF50978 GO:GO:0003676 GO:GO:0042127
GO:GO:0040035 GO:GO:0007281 GO:GO:0040020 eggNOG:NOG247734
GeneTree:ENSGT00530000063396 GO:GO:0001703 KO:K12830
HOGENOM:HOG000216677 OMA:FDTIPVA EMBL:FO081029 PIR:T32916
RefSeq:NP_491953.1 ProteinModelPortal:O44985 STRING:O44985
PaxDb:O44985 EnsemblMetazoa:K02F2.3 GeneID:172406
KEGG:cel:CELE_K02F2.3 UCSC:K02F2.3 CTD:172406 WormBase:K02F2.3
InParanoid:O44985 NextBio:875387 Uniprot:O44985
Length = 1220
Score = 372 (136.0 bits), Expect = 6.0e-33, P = 6.0e-33
Identities = 84/210 (40%), Positives = 126/210 (60%)
Query: 80 VRCAV--NQRQIVIALQGGRLIYFEMHPVSDKKESDKKKIVRCAVNQRQIVIALQGGRLI 137
+ CA+ + + I +G R I + +++ K +++IV+CAVN+RQ+ +AL GG L+
Sbjct: 506 IGCAMIGDDSLVQIYSEGIRHIRADKR-INEWKAPPRRQIVKCAVNRRQVAVALTGGELV 564
Query: 138 YFEMHPETGILDECSETIQMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQD 197
YFE+ G L+E +E +++ CM S GE SRFLA+G DN VR+ISL P D
Sbjct: 565 YFELDLN-GTLNEFTERKLFNADIACMTFSEISEGELNSRFLALGTVDNAVRIISLDPND 623
Query: 198 CLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAGPVTLGNLYLYVGLQNGALLRMVVDQ 257
L + Q LP ES+++I+ T +++ G + ++L +GLQNG L R VD
Sbjct: 624 MLMPLSTQSLPCPPESILLID------TPNEDGKG---VAAVHLNIGLQNGCLFRNTVDN 674
Query: 258 TSGDLSDNRMRYLGSRPVKLFKIRCQGNEA 287
+G + D R RYLG+RPVKLFK++CQG A
Sbjct: 675 VTGAIMDTRTRYLGTRPVKLFKVQCQGRSA 704
Score = 280 (103.6 bits), Expect = 4.0e-23, P = 4.0e-23
Identities = 58/119 (48%), Positives = 79/119 (66%)
Query: 1 EFDAYIVVSFSNATLVLSIGETVEEVSGSGFYGTTPTLCCSAMGDNSIVQVYPDGIRHIG 60
++D+YIVVSF NATL L+IG+TVEE S SGF TTPT+ C+ +GD+S+VQ+Y +GIRHI
Sbjct: 469 QYDSYIVVSFVNATLALTIGDTVEEASDSGFLPTTPTIGCAMIGDDSLVQIYSEGIRHIR 528
Query: 61 AKN--TTWXXXXXXXXXXXXIVRCAVNQRQIVIALQGGRLIYFEMHPVSDKKESDKKKI 117
A W IV+CAVN+RQ+ +AL GG L+YFE+ E ++K+
Sbjct: 529 ADKRINEWKAPPRRQ-----IVKCAVNRRQVAVALTGGELVYFELDLNGTLNEFTERKL 582
>TAIR|locus:2100616 [details] [associations]
symbol:SAP130a "spliceosome-associated protein 130 a"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM;IEA;ISS] [GO:0009507 "chloroplast" evidence=IDA]
[GO:0005829 "cytosol" evidence=RCA] [GO:0009555 "pollen
development" evidence=IMP] [GO:0009846 "pollen germination"
evidence=IMP] [GO:0048481 "ovule development" evidence=IMP]
InterPro:IPR001680 InterPro:IPR004871 InterPro:IPR015943
Pfam:PF03178 SMART:SM00320 GO:GO:0009506 GO:GO:0005634
GO:GO:0009507 EMBL:CP002686 Gene3D:2.130.10.10 GO:GO:0009555
GO:GO:0003676 EMBL:AL132954 GO:GO:0048481 GO:GO:0009846
eggNOG:NOG247734 KO:K12830 HOGENOM:HOG000216677 OMA:FDTIPVA
IPI:IPI00517026 PIR:T47659 RefSeq:NP_567015.1 RefSeq:NP_567016.1
UniGene:At.28226 UniGene:At.72270 ProteinModelPortal:Q9LD60
SMR:Q9LD60 STRING:Q9LD60 PaxDb:Q9LD60 PRIDE:Q9LD60
EnsemblPlants:AT3G55200.1 EnsemblPlants:AT3G55220.1 GeneID:824686
GeneID:824688 KEGG:ath:AT3G55200 KEGG:ath:AT3G55220
KEGG:dosa:Os02t0137400-01 TAIR:At3g55200 TAIR:At3g55220
InParanoid:Q9LD60 PhylomeDB:Q9LD60 ProtClustDB:CLSN2689171
ArrayExpress:Q9LD60 Genevestigator:Q9LD60 Uniprot:Q9LD60
Length = 1214
Score = 355 (130.0 bits), Expect = 3.9e-31, P = 3.9e-31
Identities = 82/184 (44%), Positives = 112/184 (60%)
Query: 106 VSDKKESDKKKIVRCAVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQMESEVLCMA 165
+++ + K+ IV+ N+ Q+VIAL GG LIYFE TG L E E +M +V C+
Sbjct: 531 INEWRTPGKRSIVKVGYNRLQVVIALSGGELIYFEADM-TGQLMEV-EKHEMSGDVACLD 588
Query: 166 LSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGAS--D 223
++ P G + SRFLAVG DNTVR++SL P DCL+ ++Q + ESL+ +E+ AS
Sbjct: 589 IAPVPEGRKRSRFLAVGSYDNTVRILSLDPDDCLQILSVQSVSSAPESLLFLEVQASIGG 648
Query: 224 PTSSDEPAGPVTLGNLYLYVGLQNGALLRMVVDQTSGDLSDNRMRYLGSRPVKLFKIRCQ 283
+D PA NL+L GLQNG L R VVD +G LSD+R R+LG +P KLF I +
Sbjct: 649 DDGADHPA------NLFLNSGLQNGVLFRTVVDMVTGQLSDSRSRFLGLKPPKLFSISVR 702
Query: 284 GNEA 287
G A
Sbjct: 703 GRSA 706
Score = 272 (100.8 bits), Expect = 8.9e-24, Sum P(2) = 8.9e-24
Identities = 61/119 (51%), Positives = 77/119 (64%)
Query: 1 EFDAYIVVSFSNATLVLSIGETVEEVSGSGFYGTTPTLCCSAMGDNSIVQVYPDGIRHI- 59
EFDAYIVVSF+NATLVLSIGE VEEV+ SGF TTP+L S +GD+S++QV+P+GIRHI
Sbjct: 467 EFDAYIVVSFTNATLVLSIGEQVEEVNDSGFLDTTPSLAVSLIGDDSLMQVHPNGIRHIR 526
Query: 60 -GAKNTTWXXXXXXXXXXXXIVRCAVNQRQIVIALQGGRLIYFEMHPVSDKKESDKKKI 117
+ W IV+ N+ Q+VIAL GG LIYFE E +K ++
Sbjct: 527 EDGRINEWRTPGKRS-----IVKVGYNRLQVVIALSGGELIYFEADMTGQLMEVEKHEM 580
Score = 42 (19.8 bits), Expect = 8.9e-24, Sum P(2) = 8.9e-24
Identities = 21/83 (25%), Positives = 35/83 (42%)
Query: 198 CLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAGPVTLGNLYLYVGLQNGALLRMVVDQ 257
C +++ L A+ V + AS D AG GN+Y +V L + D
Sbjct: 1010 CKYRRDENQLYIFADDCVPRWLTASHHVDFDTMAGADKFGNVY-FVRLPQDLSEEIEEDP 1068
Query: 258 TSGDLSDNRMRYLGSRPVKLFKI 280
T G + + + G+ P K+ +I
Sbjct: 1069 TGGKIKWEQGKLNGA-PNKVDEI 1090
>TAIR|locus:2100646 [details] [associations]
symbol:SAP130b "spliceosome-associated protein 130 b"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM;IEA;ISS] [GO:0005829 "cytosol" evidence=RCA]
[GO:0009506 "plasmodesma" evidence=IDA] [GO:0009555 "pollen
development" evidence=IMP] [GO:0009846 "pollen germination"
evidence=IMP] [GO:0048481 "ovule development" evidence=IMP]
InterPro:IPR001680 InterPro:IPR004871 InterPro:IPR015943
Pfam:PF03178 SMART:SM00320 GO:GO:0009506 GO:GO:0005634
GO:GO:0009507 EMBL:CP002686 Gene3D:2.130.10.10 GO:GO:0009555
GO:GO:0003676 EMBL:AL132954 GO:GO:0048481 GO:GO:0009846
eggNOG:NOG247734 KO:K12830 HOGENOM:HOG000216677 OMA:FDTIPVA
IPI:IPI00517026 PIR:T47659 RefSeq:NP_567015.1 RefSeq:NP_567016.1
UniGene:At.28226 UniGene:At.72270 ProteinModelPortal:Q9LD60
SMR:Q9LD60 STRING:Q9LD60 PaxDb:Q9LD60 PRIDE:Q9LD60
EnsemblPlants:AT3G55200.1 EnsemblPlants:AT3G55220.1 GeneID:824686
GeneID:824688 KEGG:ath:AT3G55200 KEGG:ath:AT3G55220
KEGG:dosa:Os02t0137400-01 TAIR:At3g55200 TAIR:At3g55220
InParanoid:Q9LD60 PhylomeDB:Q9LD60 ProtClustDB:CLSN2689171
ArrayExpress:Q9LD60 Genevestigator:Q9LD60 Uniprot:Q9LD60
Length = 1214
Score = 355 (130.0 bits), Expect = 3.9e-31, P = 3.9e-31
Identities = 82/184 (44%), Positives = 112/184 (60%)
Query: 106 VSDKKESDKKKIVRCAVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQMESEVLCMA 165
+++ + K+ IV+ N+ Q+VIAL GG LIYFE TG L E E +M +V C+
Sbjct: 531 INEWRTPGKRSIVKVGYNRLQVVIALSGGELIYFEADM-TGQLMEV-EKHEMSGDVACLD 588
Query: 166 LSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGAS--D 223
++ P G + SRFLAVG DNTVR++SL P DCL+ ++Q + ESL+ +E+ AS
Sbjct: 589 IAPVPEGRKRSRFLAVGSYDNTVRILSLDPDDCLQILSVQSVSSAPESLLFLEVQASIGG 648
Query: 224 PTSSDEPAGPVTLGNLYLYVGLQNGALLRMVVDQTSGDLSDNRMRYLGSRPVKLFKIRCQ 283
+D PA NL+L GLQNG L R VVD +G LSD+R R+LG +P KLF I +
Sbjct: 649 DDGADHPA------NLFLNSGLQNGVLFRTVVDMVTGQLSDSRSRFLGLKPPKLFSISVR 702
Query: 284 GNEA 287
G A
Sbjct: 703 GRSA 706
Score = 272 (100.8 bits), Expect = 8.9e-24, Sum P(2) = 8.9e-24
Identities = 61/119 (51%), Positives = 77/119 (64%)
Query: 1 EFDAYIVVSFSNATLVLSIGETVEEVSGSGFYGTTPTLCCSAMGDNSIVQVYPDGIRHI- 59
EFDAYIVVSF+NATLVLSIGE VEEV+ SGF TTP+L S +GD+S++QV+P+GIRHI
Sbjct: 467 EFDAYIVVSFTNATLVLSIGEQVEEVNDSGFLDTTPSLAVSLIGDDSLMQVHPNGIRHIR 526
Query: 60 -GAKNTTWXXXXXXXXXXXXIVRCAVNQRQIVIALQGGRLIYFEMHPVSDKKESDKKKI 117
+ W IV+ N+ Q+VIAL GG LIYFE E +K ++
Sbjct: 527 EDGRINEWRTPGKRS-----IVKVGYNRLQVVIALSGGELIYFEADMTGQLMEVEKHEM 580
Score = 42 (19.8 bits), Expect = 8.9e-24, Sum P(2) = 8.9e-24
Identities = 21/83 (25%), Positives = 35/83 (42%)
Query: 198 CLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAGPVTLGNLYLYVGLQNGALLRMVVDQ 257
C +++ L A+ V + AS D AG GN+Y +V L + D
Sbjct: 1010 CKYRRDENQLYIFADDCVPRWLTASHHVDFDTMAGADKFGNVY-FVRLPQDLSEEIEEDP 1068
Query: 258 TSGDLSDNRMRYLGSRPVKLFKI 280
T G + + + G+ P K+ +I
Sbjct: 1069 TGGKIKWEQGKLNGA-PNKVDEI 1090
>DICTYBASE|DDB_G0282569 [details] [associations]
symbol:sf3b3 "splicing factor 3B subunit 3"
species:44689 "Dictyostelium discoideum" [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0030532 "small nuclear ribonucleoprotein complex" evidence=ISS]
[GO:0008380 "RNA splicing" evidence=IEA;ISS] [GO:0006461 "protein
complex assembly" evidence=ISS] [GO:0005681 "spliceosomal complex"
evidence=IEA;ISS] [GO:0006397 "mRNA processing" evidence=IEA]
InterPro:IPR017986 InterPro:IPR004871 InterPro:IPR015943
Pfam:PF03178 dictyBase:DDB_G0282569 GO:GO:0006461 GO:GO:0008380
Gene3D:2.130.10.10 SUPFAM:SSF50978 EMBL:AAFI02000047
GenomeReviews:CM000152_GR GO:GO:0006397 GO:GO:0005681 GO:GO:0003676
GO:GO:0030532 eggNOG:NOG247734 KO:K12830 OMA:FDTIPVA
RefSeq:XP_640132.1 STRING:Q54SA7 EnsemblProtists:DDB0233171
GeneID:8623669 KEGG:ddi:DDB_G0282569 ProtClustDB:CLSZ2729005
Uniprot:Q54SA7
Length = 1256
Score = 224 (83.9 bits), Expect = 4.7e-30, Sum P(2) = 4.7e-30
Identities = 52/119 (43%), Positives = 69/119 (57%)
Query: 3 DAYIVVSFSNATLVLSIGETVEEVSGSGFYGTTPTLCCSAMGDNSIVQVYPDGIRHIGA- 61
D YIVVSF T VLS+G+T++E SG TT TL +MGD++I+QV+P G RHI +
Sbjct: 488 DKYIVVSFVGTTSVLSVGDTIQENHESGILETTTTLLVKSMGDDAIIQVFPTGFRHIKSD 547
Query: 62 -KNTTWXXXXXXXXXXXXIVRCAVNQRQIVIALQGGRLIYFEMHPVSDKKESDKKKIVR 119
+ W IVR + NQ Q+ IAL GG +IYFE+ S+ E KK + R
Sbjct: 548 LRINEWRAPGRKT-----IVRASANQSQLAIALSGGEIIYFELDQASNLIEIIKKDLRR 601
Score = 174 (66.3 bits), Expect = 1.5e-21, Sum P(2) = 1.5e-21
Identities = 37/115 (32%), Positives = 68/115 (59%)
Query: 106 VSDKKESDKKKIVRCAVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQMESEVLCMA 165
+++ + +K IVR + NQ Q+ IAL GG +IYFE+ + +++ + ++ + + C+
Sbjct: 550 INEWRAPGRKTIVRASANQSQLAIALSGGEIIYFELDQASNLIEIIKKDLRRD--IACIE 607
Query: 166 LSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDL-AESLVMIEM 219
+S P G M+RF+AV + +R++SL +CL Q ++ + ESL +IEM
Sbjct: 608 ISPIPKGRNMARFIAVSDWEGPIRVLSLDRDNCLGQVSMLDTDKVYIESLSIIEM 662
Score = 151 (58.2 bits), Expect = 4.7e-30, Sum P(2) = 4.7e-30
Identities = 30/64 (46%), Positives = 45/64 (70%)
Query: 225 TSSDEPAGPVTLG-NLYLYVGLQNGALLRMVVDQTSGDLSDNRMRYLGSRPVKLFKIRCQ 283
TS+ + VT G +L+L+VGL+NG + R +D +G+LSD R R LG +PVKLFK++ +
Sbjct: 686 TSTSSASSSVTSGGSLFLFVGLKNGVVKRATLDSVTGELSDIRTRLLGRKPVKLFKVKVR 745
Query: 284 GNEA 287
G+ A
Sbjct: 746 GSNA 749
>ASPGD|ASPL0000031473 [details] [associations]
symbol:AN5452 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR004871 InterPro:IPR015943 Pfam:PF03178 GO:GO:0008380
Gene3D:2.130.10.10 GO:GO:0006397 GO:GO:0005681 GO:GO:0003676
GO:GO:0007049 EMBL:BN001305 EMBL:AACD01000094 eggNOG:NOG247734
KO:K12830 RefSeq:XP_663056.1 STRING:Q5B1X8 GeneID:2871744
KEGG:ani:AN5452.2 HOGENOM:HOG000216677 OMA:FDTIPVA
OrthoDB:EOG4FR40R Uniprot:Q5B1X8
Length = 1209
Score = 316 (116.3 bits), Expect = 5.6e-27, P = 5.6e-27
Identities = 70/173 (40%), Positives = 101/173 (58%)
Query: 115 KKIVRCAVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQMESEVLCMALSNAPSGEQ 174
+ IV A N+RQ+ +AL G ++YFE+ + G L E E QM V C++L P G
Sbjct: 558 RSIVAAATNERQVAVALSSGEIVYFELDAD-GSLAEYDERRQMSGTVTCLSLGEVPEGRV 616
Query: 175 MSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAGPV 234
S FLAVG D+TVR++SL P L+ K++Q L +L +I M +D +G
Sbjct: 617 RSSFLAVGCDDSTVRILSLDPDTTLENKSVQALTAAPSALNIIAM-------ADSSSGGT 669
Query: 235 TLGNLYLYVGLQNGALLRMVVDQTSGDLSDNRMRYLGSRPVKLFKIRCQGNEA 287
TL YL++GL +G LR +D+ +G+LSD R R+LGS+ VKLF++ G A
Sbjct: 670 TL---YLHIGLHSGVYLRTALDEVTGELSDTRTRFLGSKAVKLFQVSVTGQTA 719
Score = 256 (95.2 bits), Expect = 1.4e-20, P = 1.4e-20
Identities = 52/116 (44%), Positives = 73/116 (62%)
Query: 1 EFDAYIVVSFSNATLVLSIGETVEEVSGSGFYGTTPTLCCSAMGDNSIVQVYPDGIRHIG 60
EFDAYIV+SF+N TLVLSIGETVEEV+ +GF + PTL +G++S++Q++P GIRHI
Sbjct: 485 EFDAYIVLSFANGTLVLSIGETVEEVTDTGFLSSAPTLAVQQLGEDSLIQIHPRGIRHIL 544
Query: 61 AKNTTWXXXXXXXXXXXXIVRCAVNQRQIVIALQGGRLIYFEMHPVSDKKESDKKK 116
A IV A N+RQ+ +AL G ++YFE+ E D+++
Sbjct: 545 ADRRV---NEWPAPQHRSIVAAATNERQVAVALSSGEIVYFELDADGSLAEYDERR 597
>CGD|CAL0004426 [details] [associations]
symbol:orf19.5391 species:5476 "Candida albicans" [GO:0071004
"U2-type prespliceosome" evidence=IEA] [GO:0005686 "U2 snRNP"
evidence=IEA] [GO:0030620 "U2 snRNA binding" evidence=IEA]
[GO:0000245 "spliceosomal complex assembly" evidence=IEA]
InterPro:IPR004871 InterPro:IPR015943 Pfam:PF03178 CGD:CAL0004426
GO:GO:0008380 Gene3D:2.130.10.10 GO:GO:0006397 GO:GO:0005681
GO:GO:0003676 GO:GO:0007049 eggNOG:NOG247734 EMBL:AACQ01000051
EMBL:AACQ01000050 RefSeq:XP_717672.1 RefSeq:XP_717766.1
STRING:Q5A7S5 GeneID:3640538 GeneID:3640666 KEGG:cal:CaO19.12846
KEGG:cal:CaO19.5391 KO:K12830 Uniprot:Q5A7S5
Length = 1219
Score = 173 (66.0 bits), Expect = 2.3e-21, Sum P(2) = 2.3e-21
Identities = 39/109 (35%), Positives = 57/109 (52%)
Query: 3 DAYIVVS--FSNATLVLSIGETVEEVSGSGFYGTTPTLCCSAMGDNSIVQVYPDGIRHIG 60
D Y+V+S S+ TLVLSIGE VE+V S F PT+ +G S+VQ+Y +GI+H+
Sbjct: 497 DEYLVISSSLSSKTLVLSIGEVVEDVEDSEFVLDQPTIAVQQVGIASVVQIYSNGIKHVR 556
Query: 61 AKNTTWXXXXXXXXXXXXIVRCAVNQRQIVIALQGGRLIYFEMHPVSDK 109
N I N +Q++IAL ++YFE+ D+
Sbjct: 557 TVNGNKKTTDWFPPAGITITHATTNNQQVLIALSNLSVVYFEIDATDDQ 605
Score = 150 (57.9 bits), Expect = 2.3e-21, Sum P(2) = 2.3e-21
Identities = 38/126 (30%), Positives = 73/126 (57%)
Query: 156 QMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLV 215
++E A++ + + S F +G +D T++++SL +CL+ K+LQ L + SL
Sbjct: 612 RLEIATTITAMAIQENISEKSPFAIIGCSDETIQVVSLQEHNCLEIKSLQALSANSSSLK 671
Query: 216 MIEMGASDPTSSDEPAGPVTLGNLYLYVGLQNGALLRMVVDQTSGDLSDNRMRYLGSRPV 275
M++ SS G T ++++G++NG R+ +D +G+LS++R++Y+GS+PV
Sbjct: 672 MLK-------SS----GKET----HVHIGMENGVYARIKIDTINGNLSNSRVKYIGSKPV 716
Query: 276 KLFKIR 281
L I+
Sbjct: 717 SLSVIK 722
Score = 134 (52.2 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 30/107 (28%), Positives = 57/107 (53%)
Query: 117 IVRCAVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQMESEVLCMALSNAPSGEQMS 176
I N +Q++IAL ++YFE+ L E + +++ + + MA+ S + S
Sbjct: 575 ITHATTNNQQVLIALSNLSVVYFEIDATDDQLIEYQDRLEIATTITAMAIQENIS--EKS 632
Query: 177 RFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASD 223
F +G +D T++++SL +CL+ K+LQ L + SL M++ +
Sbjct: 633 PFAIIGCSDETIQVVSLQEHNCLEIKSLQALSANSSSLKMLKSSGKE 679
>POMBASE|SPAPJ698.03c [details] [associations]
symbol:prp12 "U2 snRNP-associated protein Sap130
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000245
"spliceosomal complex assembly" evidence=ISS] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0005686 "U2 snRNP"
evidence=ISS] [GO:0030620 "U2 snRNA binding" evidence=ISS]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=ISS]
InterPro:IPR017986 InterPro:IPR004871 InterPro:IPR015943
Pfam:PF03178 PomBase:SPAPJ698.03c EMBL:CU329670
GenomeReviews:CU329670_GR Gene3D:2.130.10.10 SUPFAM:SSF50978
GO:GO:0005681 GO:GO:0007049 GO:GO:0000245 GO:GO:0005686
GO:GO:0045292 eggNOG:NOG247734 GO:GO:0030620 KO:K12830
HOGENOM:HOG000216677 OMA:FDTIPVA OrthoDB:EOG4FR40R EMBL:AB034966
RefSeq:NP_594414.1 IntAct:Q9UTT2 STRING:Q9UTT2
EnsemblFungi:SPAPJ698.03c.1 GeneID:2543278 KEGG:spo:SPAPJ698.03c
NextBio:20804299 Uniprot:Q9UTT2
Length = 1206
Score = 253 (94.1 bits), Expect = 3.0e-20, P = 3.0e-20
Identities = 63/166 (37%), Positives = 89/166 (53%)
Query: 117 IVRCAVNQRQIVIALQGGRLIYFEMHP--ETGILDECSETIQMESEVLCMALSNAPSGEQ 174
+V+ A+N QIV+AL G L+YFEM E G L+E E + + V +AL G +
Sbjct: 569 VVQSAINDMQIVVALSNGELVYFEMSDDVEGGQLNEYQERKTLTANVTSLALGPVQEGSR 628
Query: 175 MSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAGPV 234
S F+ + D TVR++SL L+ ++Q L A SL +I M +
Sbjct: 629 RSNFMCLACDDATVRVLSLDLYTTLENLSVQALSSPANSLCIIPMNVNG----------- 677
Query: 235 TLGNLYLYVGLQNGALLRMVVDQTSGDLSDNRMRYLGSRPVKLFKI 280
+ LYL++GL NG LR V+D TSG L D R R+LG R VK++ I
Sbjct: 678 -VSTLYLHIGLMNGVYLRTVIDVTSGQLLDTRTRFLGPRAVKIYPI 722
Score = 240 (89.5 bits), Expect = 7.2e-19, P = 7.2e-19
Identities = 50/102 (49%), Positives = 67/102 (65%)
Query: 2 FDAYIVVSFSNATLVLSIGETVEEVSGSGFYGTTPTLCCSAMGDNSIVQVYPDGIRHIGA 61
+D+YI++SF+N TLVLSIGETVEE+S SGF + TL MG +S+VQ++P GIR+I A
Sbjct: 495 YDSYIILSFTNGTLVLSIGETVEEISDSGFLSSVSTLNARQMGRDSLVQIHPKGIRYIRA 554
Query: 62 KNTTWXXXXXXXXXXXXIVRCAVNQRQIVIALQGGRLIYFEM 103
T +V+ A+N QIV+AL G L+YFEM
Sbjct: 555 NKQT---SEWKLPQDVYVVQSAINDMQIVVALSNGELVYFEM 593
>GENEDB_PFALCIPARUM|PFL1680w [details] [associations]
symbol:PFL1680w "splicing factor 3b, subunit 3,
130kD, putative" species:5833 "Plasmodium falciparum" [GO:0005681
"spliceosomal complex" evidence=ISS] [GO:0008380 "RNA splicing"
evidence=ISS] InterPro:IPR017986 InterPro:IPR004871
InterPro:IPR015943 Pfam:PF03178 GO:GO:0008380 Gene3D:2.130.10.10
SUPFAM:SSF50978 GO:GO:0005681 GO:GO:0003676 EMBL:AE014188 KO:K12830
HOGENOM:HOG000216677 RefSeq:XP_001350742.1
ProteinModelPortal:Q8I574 PRIDE:Q8I574
EnsemblProtists:PFL1680w:mRNA GeneID:811388 KEGG:pfa:PFL1680w
EuPathDB:PlasmoDB:PF3D7_1234800 OMA:PVTSSMC ProtClustDB:CLSZ2733835
Uniprot:Q8I574
Length = 1329
Score = 230 (86.0 bits), Expect = 9.5e-18, P = 9.5e-18
Identities = 55/175 (31%), Positives = 93/175 (53%)
Query: 115 KKIVRCAVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQMESEVLCMALSNAPSGEQ 174
K+I + N QIVI+L GG LIYFE+ +++ + + +E VLC+++ P
Sbjct: 573 KQIKAASSNSSQIVISLSGGELIYFEIDESHTLVEIFRKNLNVE--VLCLSIQQIPPNRV 630
Query: 175 MSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLA--ESLVMIEMGASDPTSSDEPAG 232
+ FLAVG DN VRL+S+ KQ + LP+ + + + + EM + T +
Sbjct: 631 RANFLAVGCLDNVVRLLSIEKDKYFKQLSTHLLPNNSSPQDICISEMNDNGNTMKERNI- 689
Query: 233 PVTLGNLYLYVGLQNGALLRMVVDQTSGDLSDNRMRYLGSRPVKLFKIRCQGNEA 287
++L +GL G LLR ++D +G LS++ +YLG++ +K+ + N A
Sbjct: 690 ------IFLNIGLNTGVLLRSIIDPVAGTLSNHYSKYLGAKSIKICPVNVNKNPA 738
Score = 198 (74.8 bits), Expect = 2.2e-13, P = 2.2e-13
Identities = 48/104 (46%), Positives = 58/104 (55%)
Query: 1 EFDAYIVVSFSNATLVLSIGETVEEVSGSGFYGTTPTLCCSAMGDNSIVQVYPDGIRHIG 60
E+D YIVVSF TL+L IGE+VEEVS + TL + + DNS +QVY GIRHI
Sbjct: 501 EYDGYIVVSFEGNTLILEIGESVEEVSDTLLLNNVTTLHINILYDNSFIQVYDTGIRHIN 560
Query: 61 AKNTT-WXXXXXXXXXXXXIVRCAVNQRQIVIALQGGRLIYFEM 103
K W I + N QIVI+L GG LIYFE+
Sbjct: 561 GKVVQEWVAPKNKQ-----IKAASSNSSQIVISLSGGELIYFEI 599
>UNIPROTKB|Q8I574 [details] [associations]
symbol:PFL1680w "Splicing factor 3b, subunit 3, 130kD,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0005681
"spliceosomal complex" evidence=ISS] [GO:0008380 "RNA splicing"
evidence=ISS] InterPro:IPR017986 InterPro:IPR004871
InterPro:IPR015943 Pfam:PF03178 GO:GO:0008380 Gene3D:2.130.10.10
SUPFAM:SSF50978 GO:GO:0005681 GO:GO:0003676 EMBL:AE014188 KO:K12830
HOGENOM:HOG000216677 RefSeq:XP_001350742.1
ProteinModelPortal:Q8I574 PRIDE:Q8I574
EnsemblProtists:PFL1680w:mRNA GeneID:811388 KEGG:pfa:PFL1680w
EuPathDB:PlasmoDB:PF3D7_1234800 OMA:PVTSSMC ProtClustDB:CLSZ2733835
Uniprot:Q8I574
Length = 1329
Score = 230 (86.0 bits), Expect = 9.5e-18, P = 9.5e-18
Identities = 55/175 (31%), Positives = 93/175 (53%)
Query: 115 KKIVRCAVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQMESEVLCMALSNAPSGEQ 174
K+I + N QIVI+L GG LIYFE+ +++ + + +E VLC+++ P
Sbjct: 573 KQIKAASSNSSQIVISLSGGELIYFEIDESHTLVEIFRKNLNVE--VLCLSIQQIPPNRV 630
Query: 175 MSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLA--ESLVMIEMGASDPTSSDEPAG 232
+ FLAVG DN VRL+S+ KQ + LP+ + + + + EM + T +
Sbjct: 631 RANFLAVGCLDNVVRLLSIEKDKYFKQLSTHLLPNNSSPQDICISEMNDNGNTMKERNI- 689
Query: 233 PVTLGNLYLYVGLQNGALLRMVVDQTSGDLSDNRMRYLGSRPVKLFKIRCQGNEA 287
++L +GL G LLR ++D +G LS++ +YLG++ +K+ + N A
Sbjct: 690 ------IFLNIGLNTGVLLRSIIDPVAGTLSNHYSKYLGAKSIKICPVNVNKNPA 738
Score = 198 (74.8 bits), Expect = 2.2e-13, P = 2.2e-13
Identities = 48/104 (46%), Positives = 58/104 (55%)
Query: 1 EFDAYIVVSFSNATLVLSIGETVEEVSGSGFYGTTPTLCCSAMGDNSIVQVYPDGIRHIG 60
E+D YIVVSF TL+L IGE+VEEVS + TL + + DNS +QVY GIRHI
Sbjct: 501 EYDGYIVVSFEGNTLILEIGESVEEVSDTLLLNNVTTLHINILYDNSFIQVYDTGIRHIN 560
Query: 61 AKNTT-WXXXXXXXXXXXXIVRCAVNQRQIVIALQGGRLIYFEM 103
K W I + N QIVI+L GG LIYFE+
Sbjct: 561 GKVVQEWVAPKNKQ-----IKAASSNSSQIVISLSGGELIYFEI 599
>UNIPROTKB|Q6P6Z0 [details] [associations]
symbol:ddb1 "DNA damage-binding protein 1" species:8355
"Xenopus laevis" [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0031464 "Cul4A-RING ubiquitin ligase
complex" evidence=ISS] [GO:0031465 "Cul4B-RING ubiquitin ligase
complex" evidence=ISS] [GO:0043161 "proteasomal ubiquitin-dependent
protein catabolic process" evidence=ISS] [GO:0080008 "Cul4-RING
ubiquitin ligase complex" evidence=ISS] InterPro:IPR004871
InterPro:IPR015943 Pfam:PF03178 UniPathway:UPA00143 GO:GO:0005634
GO:GO:0005737 GO:GO:0043161 Gene3D:2.130.10.10 GO:GO:0003677
GO:GO:0006281 GO:GO:0016567 GO:GO:0031464 GO:GO:0031465 KO:K10610
CTD:1642 HOVERGEN:HBG005460 HSSP:Q16531 EMBL:BC061946
RefSeq:NP_001083624.1 UniGene:Xl.23906 PRIDE:Q6P6Z0 GeneID:399026
KEGG:xla:399026 Xenbase:XB-GENE-967911 Uniprot:Q6P6Z0
Length = 1140
Score = 141 (54.7 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 45/141 (31%), Positives = 77/141 (54%)
Query: 85 NQRQIVIALQGGRLIYFE-MHPVSDKKESDKKKIVRCAVNQRQIVIALQGGRLIYF-EMH 142
+Q+ I I RL+ + VS+ KE +K+ C+ N RQ+++A+ GR++Y+ E+H
Sbjct: 465 HQQLIQITSASVRLVSQNPQNLVSEWKEPQGRKVSVCSCNSRQVLLAV--GRVLYYLEIH 522
Query: 143 PETGILDECSETIQMESEVLCMALSNAPSGEQMSRFLAVGL-ADNTVRLISLAPQDCLKQ 201
P G L + S T +ME EV C+ ++ + +S A+GL D + R++SL P L
Sbjct: 523 P--GELRQTSCT-EMEHEVACLDVTPLGGNDTLSSLCAIGLWTDISARILSL-PGFQLLH 578
Query: 202 KNLQGLPDLAESLVMIEMGAS 222
K + G + S++M +S
Sbjct: 579 KEMLGGEIIPRSILMTSFESS 599
Score = 114 (45.2 bits), Expect = 2.2e-06, Sum P(2) = 2.2e-06
Identities = 30/105 (28%), Positives = 53/105 (50%)
Query: 3 DAYIVVSFSNATLVLSI-GETVEEVSGSGFYGTTPTLCCSAMGDNSIVQVYPDGIRHIGA 61
D +V+SF T VL++ GE VEE +GF T C + ++Q+ +R + +
Sbjct: 422 DDTLVLSFVGQTRVLTLTGEEVEETDLAGFVDDQQTFFCGNVAHQQLIQITSASVRLV-S 480
Query: 62 KNTTWXXXXXXXXXXXXIVRCAVNQRQIVIALQGGRLIYF-EMHP 105
+N + C+ N RQ+++A+ GR++Y+ E+HP
Sbjct: 481 QNPQNLVSEWKEPQGRKVSVCSCNSRQVLLAV--GRVLYYLEIHP 523
Score = 73 (30.8 bits), Expect = 2.2e-06, Sum P(2) = 2.2e-06
Identities = 32/126 (25%), Positives = 52/126 (41%)
Query: 156 QMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLV 215
+ME EV C+ ++ + +S A+GL + I P L K + G + S++
Sbjct: 533 EMEHEVACLDVTPLGGNDTLSSLCAIGLWTDISARILSLPGFQLLHKEMLGGEIIPRSIL 592
Query: 216 MIEMGASDPTSSDEPAGPVTLGNLYLYVGLQNGALLRMVVDQTSGDLSDNRMRYLGSRPV 275
M +S YL L +GAL ++ +G LSD + LG++P
Sbjct: 593 MTSFESSH----------------YLLCALGDGALFYFSLNTDTGLLSDRKKVTLGTQPT 636
Query: 276 KLFKIR 281
L R
Sbjct: 637 VLRTFR 642
Score = 55 (24.4 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 20/75 (26%), Positives = 38/75 (50%)
Query: 90 VIALQGGRLIYFEMHPVSDKKESDKKKIVRCAV-NQRQIVIALQGGRLIYFEMHPETGIL 148
+++L G +L++ EM E + I+ + + ++ AL G L YF ++ +TG+L
Sbjct: 568 ILSLPGFQLLHKEMLG----GEIIPRSILMTSFESSHYLLCALGDGALFYFSLNTDTGLL 623
Query: 149 -DECSETIQMESEVL 162
D T+ + VL
Sbjct: 624 SDRKKVTLGTQPTVL 638
>TAIR|locus:2115909 [details] [associations]
symbol:DDB1A "damaged DNA binding protein 1A"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM;IEA;IDA;IPI] [GO:0010100
"negative regulation of photomorphogenesis" evidence=IGI;RCA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IPI] [GO:0005515 "protein binding" evidence=IPI]
[GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=IPI]
[GO:0005829 "cytosol" evidence=IDA] [GO:0000278 "mitotic cell
cycle" evidence=RCA] [GO:0000911 "cytokinesis by cell plate
formation" evidence=RCA] [GO:0003002 "regionalization"
evidence=RCA] [GO:0006281 "DNA repair" evidence=RCA] [GO:0006486
"protein glycosylation" evidence=RCA] [GO:0007155 "cell adhesion"
evidence=RCA] [GO:0008284 "positive regulation of cell
proliferation" evidence=RCA] [GO:0009630 "gravitropism"
evidence=RCA] [GO:0009639 "response to red or far red light"
evidence=RCA] [GO:0010090 "trichome morphogenesis" evidence=RCA]
[GO:0033043 "regulation of organelle organization" evidence=RCA]
[GO:0045010 "actin nucleation" evidence=RCA] [GO:0048449 "floral
organ formation" evidence=RCA] [GO:0048608 "reproductive structure
development" evidence=RCA] InterPro:IPR017986 InterPro:IPR004871
InterPro:IPR015943 Pfam:PF03178 UniPathway:UPA00143 GO:GO:0005829
GO:GO:0005634 GO:GO:0045892 EMBL:CP002687 GenomeReviews:CT486007_GR
Gene3D:2.130.10.10 SUPFAM:SSF50978 GO:GO:0003677 GO:GO:0006281
GO:GO:0016567 GO:GO:0009585 EMBL:AL161503 GO:GO:0080008
GO:GO:0010100 EMBL:AY074257 EMBL:BT001905 EMBL:AK230366
IPI:IPI00548104 PIR:B85068 RefSeq:NP_192451.1 UniGene:At.32663
UniGene:At.47587 ProteinModelPortal:Q9M0V3 DIP:DIP-40455N
IntAct:Q9M0V3 STRING:Q9M0V3 PaxDb:Q9M0V3 PRIDE:Q9M0V3 ProMEX:Q9M0V3
EnsemblPlants:AT4G05420.1 GeneID:825890 KEGG:ath:AT4G05420
GeneFarm:4660 TAIR:At4g05420 eggNOG:NOG247734 HOGENOM:HOG000007241
InParanoid:Q9M0V3 KO:K10610 OMA:CALGDGS PhylomeDB:Q9M0V3
ProtClustDB:CLSN2685347 Genevestigator:Q9M0V3 GermOnline:AT4G05420
Uniprot:Q9M0V3
Length = 1088
Score = 114 (45.2 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 32/105 (30%), Positives = 50/105 (47%)
Query: 2 FDAYIVVSFSNATLVLSIG--ETVEEVSGSGFYGTTPTLCCSAMGDNSIVQVYPDGIRHI 59
FD ++VVSF + T +L++ + +EE GF TL C N +VQV + +R +
Sbjct: 413 FDTFLVVSFISETRILAMNLEDELEETEIEGFLSQVQTLFCHDAVYNQLVQVTSNSVRLV 472
Query: 60 GAKNTTWXXXXXXXXXXXXIVRCAV-NQRQIVIALQGGRLIYFEM 103
+ TT V A N Q+++A GG L+Y E+
Sbjct: 473 SS--TTRELRDEWHAPAGFTVNVATANASQVLLATGGGHLVYLEI 515
Score = 97 (39.2 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 33/126 (26%), Positives = 57/126 (45%)
Query: 83 AVNQRQIVIALQGGRLIYFEMHPVSDKKESDKKKIVRCAV-NQRQIVIALQGGRLIYFEM 141
AV + + + RL+ + D+ + V A N Q+++A GG L+Y E+
Sbjct: 456 AVYNQLVQVTSNSVRLVSSTTRELRDEWHAPAGFTVNVATANASQVLLATGGGHLVYLEI 515
Query: 142 HPETGILDECSETIQMESEVLCMALSNAPSGEQMSRFLAVGL-ADNTVRLISLAPQDCLK 200
G L E + +E EV C+ ++ S+ AVG+ D +VR+ SL +
Sbjct: 516 GD--GKLTEVQHAL-LEYEVSCLDINPIGDNPNYSQLAAVGMWTDISVRIFSLPELTLIT 572
Query: 201 QKNLQG 206
++ L G
Sbjct: 573 KEQLGG 578
Score = 72 (30.4 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 237 GNLYLYVGLQNGALLRMVVDQTSGDLSDNRMRYLGSRPVKL 277
G YL L +G LL +D T+G L D + LG++P+ L
Sbjct: 592 GISYLLCALGDGHLLNFQMDTTTGQLKDRKKVSLGTQPITL 632
>UNIPROTKB|A1A4K3 [details] [associations]
symbol:DDB1 "DNA damage-binding protein 1" species:9913
"Bos taurus" [GO:0080008 "Cul4-RING ubiquitin ligase complex"
evidence=ISS] [GO:0031464 "Cul4A-RING ubiquitin ligase complex"
evidence=ISS] [GO:0043161 "proteasomal ubiquitin-dependent protein
catabolic process" evidence=ISS] [GO:0031465 "Cul4B-RING ubiquitin
ligase complex" evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0042787 "protein
ubiquitination involved in ubiquitin-dependent protein catabolic
process" evidence=IEA] [GO:0016055 "Wnt receptor signaling pathway"
evidence=IEA] [GO:0000075 "cell cycle checkpoint" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR004871 InterPro:IPR015943 Pfam:PF03178
UniPathway:UPA00143 GO:GO:0005634 GO:GO:0005737 GO:GO:0043161
GO:GO:0016055 Gene3D:2.130.10.10 GO:GO:0003677 GO:GO:0006281
GO:GO:0042787 GO:GO:0000075 GO:GO:0031464 GO:GO:0031465
eggNOG:NOG247734 HOGENOM:HOG000007241 KO:K10610 OMA:CALGDGS
EMBL:BC126629 IPI:IPI00713891 RefSeq:NP_001073731.1
UniGene:Bt.62917 STRING:A1A4K3 PRIDE:A1A4K3
Ensembl:ENSBTAT00000028740 GeneID:511951 KEGG:bta:511951 CTD:1642
GeneTree:ENSGT00530000063396 HOVERGEN:HBG005460 InParanoid:A1A4K3
OrthoDB:EOG4KPT91 NextBio:20870176 Uniprot:A1A4K3
Length = 1140
Score = 138 (53.6 bits), Expect = 4.5e-06, P = 4.5e-06
Identities = 59/199 (29%), Positives = 90/199 (45%)
Query: 85 NQRQIVIALQGGRLIYFEMHP-VSDKKESDKKKIVRCAVNQRQIVIALQGGRLIYFEMHP 143
+Q+ I I RL+ E VS+ KE K I + N Q+V+A+ G L Y ++HP
Sbjct: 465 HQQLIQITSASVRLVSQEPKALVSEWKEPQGKNISVASCNSSQVVVAV-GRALYYLQIHP 523
Query: 144 ETGILDECSETIQMESEVLCMALSNAPSGEQMSRFLAVGL-ADNTVRLISLAPQDCLKQK 202
+ L + S T +ME EV C+ ++ MS A+GL D + R+ L P L K
Sbjct: 524 QE--LRQISHT-EMEHEVACLDITPLGDSNGMSPLCAIGLWTDISARIAKL-PSFELLHK 579
Query: 203 NLQGLPDLAESLVMIEMGASDPTSSDEPAGPVTLGNLYLYVGLQNGALLRMVVDQTSGDL 262
+ G + S++M +S YL L +GAL ++ +G L
Sbjct: 580 EMLGGEIIPRSILMTTFESSH----------------YLLCALGDGALFYFGLNIETGLL 623
Query: 263 SDNRMRYLGSRPVKLFKIR 281
SD + LG++P L R
Sbjct: 624 SDRKKVTLGTQPTVLRTFR 642
>TAIR|locus:2127368 [details] [associations]
symbol:DDB1B "damaged DNA binding protein 1B"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IEA;IDA]
[GO:0003684 "damaged DNA binding" evidence=ISS] [GO:0009793 "embryo
development ending in seed dormancy" evidence=IMP] [GO:0005515
"protein binding" evidence=IPI] [GO:0005829 "cytosol" evidence=RCA]
[GO:0006281 "DNA repair" evidence=RCA] [GO:0007062 "sister
chromatid cohesion" evidence=RCA] [GO:0009880 "embryonic pattern
specification" evidence=RCA] [GO:0010072 "primary shoot apical
meristem specification" evidence=RCA] [GO:0010100 "negative
regulation of photomorphogenesis" evidence=RCA] [GO:0010162 "seed
dormancy process" evidence=RCA] [GO:0010431 "seed maturation"
evidence=RCA] [GO:0010564 "regulation of cell cycle process"
evidence=RCA] [GO:0045595 "regulation of cell differentiation"
evidence=RCA] [GO:0048366 "leaf development" evidence=RCA]
[GO:0048608 "reproductive structure development" evidence=RCA]
[GO:0048825 "cotyledon development" evidence=RCA] [GO:0051301 "cell
division" evidence=RCA] InterPro:IPR017986 InterPro:IPR004871
InterPro:IPR015943 Pfam:PF03178 UniPathway:UPA00143 GO:GO:0005634
EMBL:CP002687 GenomeReviews:CT486007_GR Gene3D:2.130.10.10
SUPFAM:SSF50978 EMBL:AL161554 GO:GO:0003677 GO:GO:0006281
GO:GO:0009793 GO:GO:0016567 GO:GO:0009585 EMBL:AL021960
UniGene:At.32663 eggNOG:NOG247734 HOGENOM:HOG000007241 KO:K10610
ProtClustDB:CLSN2685347 EMBL:AK220648 EMBL:AK229805 IPI:IPI00536598
PIR:T04941 RefSeq:NP_193842.1 ProteinModelPortal:O49552 SMR:O49552
DIP:DIP-46981N IntAct:O49552 STRING:O49552 PaxDb:O49552
PRIDE:O49552 EnsemblPlants:AT4G21100.1 GeneID:827857
KEGG:ath:AT4G21100 GeneFarm:4661 TAIR:At4g21100 InParanoid:O49552
OMA:DRPAVIY PhylomeDB:O49552 Genevestigator:O49552
GermOnline:AT4G21100 Uniprot:O49552
Length = 1088
Score = 115 (45.5 bits), Expect = 5.1e-06, Sum P(2) = 5.1e-06
Identities = 33/105 (31%), Positives = 50/105 (47%)
Query: 2 FDAYIVVSFSNAT--LVLSIGETVEEVSGSGFYGTTPTLCCSAMGDNSIVQVYPDGIRHI 59
FD ++VVSF + T L ++I + +EE GF TL C N +VQV + +R +
Sbjct: 413 FDTFLVVSFISETRILAMNIEDELEETEIEGFLSEVQTLFCHDAVYNQLVQVTSNSVRLV 472
Query: 60 GAKNTTWXXXXXXXXXXXXIVRCAV-NQRQIVIALQGGRLIYFEM 103
+ TT V A N Q+++A GG L+Y E+
Sbjct: 473 SS--TTRELRNKWDAPAGFSVNVATANASQVLLATGGGHLVYLEI 515
Score = 68 (29.0 bits), Expect = 5.1e-06, Sum P(2) = 5.1e-06
Identities = 16/41 (39%), Positives = 22/41 (53%)
Query: 237 GNLYLYVGLQNGALLRMVVDQTSGDLSDNRMRYLGSRPVKL 277
G YL L +G LL +D + G L D + LG+RP+ L
Sbjct: 592 GISYLLCALGDGHLLNFQLDTSCGKLRDRKKVSLGTRPITL 632
>UNIPROTKB|F1RIE2 [details] [associations]
symbol:DDB1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043161 "proteasomal ubiquitin-dependent protein
catabolic process" evidence=IEA] [GO:0042787 "protein
ubiquitination involved in ubiquitin-dependent protein catabolic
process" evidence=IEA] [GO:0031465 "Cul4B-RING ubiquitin ligase
complex" evidence=IEA] [GO:0031464 "Cul4A-RING ubiquitin ligase
complex" evidence=IEA] [GO:0016055 "Wnt receptor signaling pathway"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0000075
"cell cycle checkpoint" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR004871 InterPro:IPR015943 Pfam:PF03178 GO:GO:0005634
GO:GO:0005737 GO:GO:0043161 GO:GO:0016055 Gene3D:2.130.10.10
GO:GO:0003676 GO:GO:0042787 GO:GO:0000075 GO:GO:0031464
GO:GO:0031465 KO:K10610 OMA:CALGDGS GeneTree:ENSGT00530000063396
EMBL:CU462918 RefSeq:XP_003122699.1 Ensembl:ENSSSCT00000014314
GeneID:100522239 KEGG:ssc:100522239 Uniprot:F1RIE2
Length = 1140
Score = 136 (52.9 bits), Expect = 7.6e-06, P = 7.6e-06
Identities = 57/198 (28%), Positives = 88/198 (44%)
Query: 85 NQRQIVIALQGGRLIYFEMHP-VSDKKESDKKKIVRCAVNQRQIVIALQGGRLIYFEMHP 143
+Q+ I I RL+ E VS+ KE K I + N Q+V+A+ G L Y ++HP
Sbjct: 465 HQQLIQITSASVRLVSQEPKALVSEWKEPQGKNISVASCNSNQVVVAV-GRALYYLQIHP 523
Query: 144 ETGILDECSETIQMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKN 203
+ L + S T +ME EV C+ ++ +S A+GL + IS P L K
Sbjct: 524 QE--LRQISHT-EMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARISKLPSFELLHKE 580
Query: 204 LQGLPDLAESLVMIEMGASDPTSSDEPAGPVTLGNLYLYVGLQNGALLRMVVDQTSGDLS 263
+ G + S++M +S YL L +GAL ++ +G LS
Sbjct: 581 MLGGEIIPRSILMTTFESSH----------------YLLCALGDGALFYFGLNIETGLLS 624
Query: 264 DNRMRYLGSRPVKLFKIR 281
D + LG++P L R
Sbjct: 625 DRKKVTLGTQPTVLRTFR 642
>UNIPROTKB|F5H775 [details] [associations]
symbol:DDB1 "DNA damage-binding protein 1" species:9606
"Homo sapiens" [GO:0016055 "Wnt receptor signaling pathway"
evidence=IEA] GO:GO:0016055 GO:GO:0003684 EMBL:AP003108
HGNC:HGNC:2717 ChiTaRS:DDB1 EMBL:AP003037 IPI:IPI01015574
ProteinModelPortal:F5H775 SMR:F5H775 Ensembl:ENST00000537877
ArrayExpress:F5H775 Bgee:F5H775 Uniprot:F5H775
Length = 240
Score = 125 (49.1 bits), Expect = 9.5e-06, P = 9.5e-06
Identities = 43/140 (30%), Positives = 69/140 (49%)
Query: 85 NQRQIVIALQGGRLIYFEMHP-VSDKKESDKKKIVRCAVNQRQIVIALQGGRLIYFEMHP 143
+Q+ I I RL+ E VS+ KE K I + N Q+V+A+ G L Y ++HP
Sbjct: 29 HQQLIQITSASVRLVSQEPKALVSEWKEPQAKNISVASCNSSQVVVAV-GRALYYLQIHP 87
Query: 144 ETGILDECSETIQMESEVLCMALSNAPSGEQMSRFLAVGL-ADNTVRLISLAPQDCLKQK 202
+ L + S T +ME EV C+ ++ +S A+GL D + R++ L P L K
Sbjct: 88 QE--LRQISHT-EMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKL-PSFELLHK 143
Query: 203 NLQGLPDLAESLVMIEMGAS 222
+ G + S++M +S
Sbjct: 144 EMLGGEIIPRSILMTTFESS 163
>UNIPROTKB|F5H6C5 [details] [associations]
symbol:DDB1 "DNA damage-binding protein 1" species:9606
"Homo sapiens" [GO:0016055 "Wnt receptor signaling pathway"
evidence=IEA] GO:GO:0016055 GO:GO:0003684 EMBL:AP003108
HGNC:HGNC:2717 ChiTaRS:DDB1 EMBL:AP003037 IPI:IPI00909008
ProteinModelPortal:F5H6C5 SMR:F5H6C5 Ensembl:ENST00000535967
ArrayExpress:F5H6C5 Bgee:F5H6C5 Uniprot:F5H6C5
Length = 272
Score = 125 (49.1 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 43/140 (30%), Positives = 69/140 (49%)
Query: 85 NQRQIVIALQGGRLIYFEMHP-VSDKKESDKKKIVRCAVNQRQIVIALQGGRLIYFEMHP 143
+Q+ I I RL+ E VS+ KE K I + N Q+V+A+ G L Y ++HP
Sbjct: 116 HQQLIQITSASVRLVSQEPKALVSEWKEPQAKNISVASCNSSQVVVAV-GRALYYLQIHP 174
Query: 144 ETGILDECSETIQMESEVLCMALSNAPSGEQMSRFLAVGL-ADNTVRLISLAPQDCLKQK 202
+ L + S T +ME EV C+ ++ +S A+GL D + R++ L P L K
Sbjct: 175 QE--LRQISHT-EMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKL-PSFELLHK 230
Query: 203 NLQGLPDLAESLVMIEMGAS 222
+ G + S++M +S
Sbjct: 231 EMLGGEIIPRSILMTTFESS 250
>FB|FBgn0260962 [details] [associations]
symbol:pic "piccolo" species:7227 "Drosophila melanogaster"
[GO:0003684 "damaged DNA binding" evidence=ISS] [GO:0006289
"nucleotide-excision repair" evidence=ISS;NAS] [GO:0005634
"nucleus" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IMP] [GO:0035220 "wing disc development"
evidence=IMP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0042787 "protein ubiquitination involved in ubiquitin-dependent
protein catabolic process" evidence=ISS] [GO:0007307 "eggshell
chorion gene amplification" evidence=IDA] [GO:0007095 "mitotic G2
DNA damage checkpoint" evidence=IGI] InterPro:IPR004871
Pfam:PF03178 UniPathway:UPA00143 EMBL:AE014297 GO:GO:0005634
GO:GO:0005737 GO:GO:0007095 GO:GO:0043161 GO:GO:0003677
GO:GO:0006281 GO:GO:0035220 GO:GO:0042787 GO:GO:0007307
eggNOG:NOG247734 KO:K10610 OMA:CALGDGS GeneTree:ENSGT00530000063396
HSSP:Q16531 EMBL:AF132145 RefSeq:NP_650257.1 UniGene:Dm.3215
ProteinModelPortal:Q9XYZ5 SMR:Q9XYZ5 STRING:Q9XYZ5 PaxDb:Q9XYZ5
PRIDE:Q9XYZ5 EnsemblMetazoa:FBtr0082709 GeneID:41611
KEGG:dme:Dmel_CG7769 UCSC:CG7769-RA CTD:41611 FlyBase:FBgn0260962
InParanoid:Q9XYZ5 OrthoDB:EOG4S1RP0 PhylomeDB:Q9XYZ5
GenomeRNAi:41611 NextBio:824642 Bgee:Q9XYZ5 Uniprot:Q9XYZ5
Length = 1140
Score = 95 (38.5 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
Identities = 44/166 (26%), Positives = 77/166 (46%)
Query: 117 IVRCAVNQRQIVIALQGGRLIYFEMHPETGILDECSETIQMESEVLCMALSNAPSGEQMS 176
+V C N QI++A + Y + E G L E S + EV C+ ++ ++ S
Sbjct: 499 VVSC--NTTQILVA-SACDIFYIVI--EDGSLREQSRRT-LAYEVACLDITPLDETQKKS 552
Query: 177 RFLAVGL-ADNTVRLISLAPQDCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAGPVT 235
+AVGL D + ++SL + + + L G + S++M T+ +
Sbjct: 553 DLVAVGLWTDISAVILSLPDLETIYTEKLSG-EIIPRSILM--------TTFE------- 596
Query: 236 LGNLYLYVGLQNGALLRMVVDQTSGDLSDNRMRYLGSRPVKLFKIR 281
G YL L +G++ ++DQT+G L+D + LG++P L R
Sbjct: 597 -GIHYLLCALGDGSMYYFIMDQTTGQLTDKKKVTLGTQPTTLRTFR 641
Score = 83 (34.3 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
Identities = 25/93 (26%), Positives = 42/93 (45%)
Query: 2 FDAYIVVSFSNATLVLSI-GETVEEVSGSGFYGTTPTLCCSAMGDNSIVQVYPDGIRHIG 60
++ +V++F T +L++ GE VEE GF T CS + + ++QV D +R +
Sbjct: 420 YENTLVLAFVGHTRILTLSGEEVEETEIPGFASDLQTFLCSNVDYDQLIQVTSDSVRLVS 479
Query: 61 -AKNTTWXXXXXXXXXXXXIVRCAVNQRQIVIA 92
A +V C N QI++A
Sbjct: 480 SATKALVAEWRPTGDRTIGVVSC--NTTQILVA 510
>DICTYBASE|DDB_G0286013 [details] [associations]
symbol:repE "UV-damaged DNA binding protein1"
species:44689 "Dictyostelium discoideum" [GO:0005634 "nucleus"
evidence=IEA;ISS;IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA;IEP]
[GO:0006289 "nucleotide-excision repair" evidence=ISS] [GO:0003684
"damaged DNA binding" evidence=ISS] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0016567 "protein ubiquitination" evidence=IEA]
InterPro:IPR017986 InterPro:IPR004871 Pfam:PF03178
UniPathway:UPA00143 dictyBase:DDB_G0286013 GO:GO:0005634
GO:GO:0005737 GenomeReviews:CM000153_GR SUPFAM:SSF50978
GO:GO:0003684 GO:GO:0016567 EMBL:AAFI02000085 GO:GO:0006289
eggNOG:NOG247734 KO:K10610 OMA:CALGDGS EMBL:U50042 PIR:S71092
RefSeq:XP_637896.2 STRING:B0M0P5 EnsemblProtists:DDB0191144
GeneID:8625406 KEGG:ddi:DDB_G0286013 ProtClustDB:CLSZ2430134
Uniprot:B0M0P5
Length = 1181
Score = 98 (39.6 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 35/117 (29%), Positives = 53/117 (45%)
Query: 3 DAYIVVSFSNATLVLSI-GETVEEVSGSGFYGTTPTLCCSAMGD-NSIVQVYPDGIRHIG 60
D Y++ SF T VLS GE +EE G TL C + N ++Q+ I I
Sbjct: 474 DRYLITSFIECTKVLSFQGEEIEETEFEGLESNCSTLYCGTIDKLNLLIQITNVSINLID 533
Query: 61 AKNTTWXXXXXXXXXXXXIVRCAVNQRQIVIALQGGRLIYFEMHPVSDKKESDKKKI 117
+ NT I + NQ QIV+++ L+YF+++ S+K K+I
Sbjct: 534 S-NTFKRVSQWNVEPSRRINLVSTNQDQIVLSIDKS-LLYFQINS-SNKSIQLVKEI 587
Score = 74 (31.1 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 38/151 (25%), Positives = 69/151 (45%)
Query: 136 LIYFEMHPETGILDECSETIQMESEVLCMALSNAPSG-EQMSRFLAVGLADNTVRLISLA 194
L+YF+++ + E I++ E+ C+ +S S + S+ ++VGL ++ I
Sbjct: 569 LLYFQINSSNKSIQLVKE-IELPHEISCIDISPFDSFMDTKSQLVSVGLWNDITLRIFKL 627
Query: 195 PQDCLKQ--KNLQGLPDLAESLVMIEMGASDPTSSDEPAGPVTLGNLYLYVGLQNGALLR 252
P L++ K G L S++MI + D Y++ L +G L +
Sbjct: 628 PT--LEEIWKEPLGGEILPRSILMISFDSID----------------YIFCSLGDGHLFK 669
Query: 253 MVVDQTSGDLSDNRMRYLGSRPV--KLFKIR 281
D +S L D R LG++P+ K FK++
Sbjct: 670 FQFDFSSFKLFDKRKLTLGTQPIILKKFKLK 700
>UNIPROTKB|F5GY55 [details] [associations]
symbol:DDB1 "Uncharacterized protein" species:9606 "Homo
sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR004871
InterPro:IPR015943 Pfam:PF03178 GO:GO:0005634 Gene3D:2.130.10.10
GO:GO:0003676 EMBL:AP003108 HGNC:HGNC:2717 ChiTaRS:DDB1
EMBL:AP003037 IPI:IPI00977083 SMR:F5GY55 Ensembl:ENST00000540166
Uniprot:F5GY55
Length = 1092
Score = 125 (49.1 bits), Expect = 0.00013, P = 0.00013
Identities = 43/140 (30%), Positives = 69/140 (49%)
Query: 85 NQRQIVIALQGGRLIYFEMHP-VSDKKESDKKKIVRCAVNQRQIVIALQGGRLIYFEMHP 143
+Q+ I I RL+ E VS+ KE K I + N Q+V+A+ G L Y ++HP
Sbjct: 465 HQQLIQITSASVRLVSQEPKALVSEWKEPQAKNISVASCNSSQVVVAV-GRALYYLQIHP 523
Query: 144 ETGILDECSETIQMESEVLCMALSNAPSGEQMSRFLAVGL-ADNTVRLISLAPQDCLKQK 202
+ L + S T +ME EV C+ ++ +S A+GL D + R++ L P L K
Sbjct: 524 QE--LRQISHT-EMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKL-PSFELLHK 579
Query: 203 NLQGLPDLAESLVMIEMGAS 222
+ G + S++M +S
Sbjct: 580 EMLGGEIIPRSILMTTFESS 599
Score = 97 (39.2 bits), Expect = 0.00065, Sum P(2) = 0.00065
Identities = 29/106 (27%), Positives = 45/106 (42%)
Query: 1 EFDAYIVVSFSNATLVLSI-GETVEEVSGSGFYGTTPTLCCSAMGDNSIVQVYPDGIRHI 59
E D +V+SF T VL + GE VEE GF T C + ++Q+ +R +
Sbjct: 420 ETDDTLVLSFVGQTRVLMLNGEEVEETELMGFVDDQQTFFCGNVAHQQLIQITSASVRLV 479
Query: 60 GAKNTTWXXXXXXXXXXXXIVRCAVNQRQIVIALQGGRLIYFEMHP 105
+ V + N Q+V+A+ G L Y ++HP
Sbjct: 480 SQEPKALVSEWKEPQAKNISV-ASCNSSQVVVAV-GRALYYLQIHP 523
Score = 67 (28.6 bits), Expect = 0.00065, Sum P(2) = 0.00065
Identities = 32/126 (25%), Positives = 51/126 (40%)
Query: 156 QMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLV 215
+ME EV C+ ++ +S A+GL + I P L K + G + S++
Sbjct: 533 EMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSIL 592
Query: 216 MIEMGASDPTSSDEPAGPVTLGNLYLYVGLQNGALLRMVVDQTSGDLSDNRMRYLGSRPV 275
M +S YL L +GAL ++ +G LSD + LG++P
Sbjct: 593 MTTFESSH----------------YLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPT 636
Query: 276 KLFKIR 281
L R
Sbjct: 637 VLRTFR 642
>UNIPROTKB|Q16531 [details] [associations]
symbol:DDB1 "DNA damage-binding protein 1" species:9606
"Homo sapiens" [GO:0019048 "virus-host interaction" evidence=IEA]
[GO:0016055 "Wnt receptor signaling pathway" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0000075 "cell cycle checkpoint" evidence=IMP]
[GO:0005634 "nucleus" evidence=IDA] [GO:0042787 "protein
ubiquitination involved in ubiquitin-dependent protein catabolic
process" evidence=IDA] [GO:0031464 "Cul4A-RING ubiquitin ligase
complex" evidence=IDA] [GO:0031465 "Cul4B-RING ubiquitin ligase
complex" evidence=IDA] [GO:0043161 "proteasomal ubiquitin-dependent
protein catabolic process" evidence=IMP] [GO:0080008 "Cul4-RING
ubiquitin ligase complex" evidence=IDA] [GO:0003677 "DNA binding"
evidence=TAS] [GO:0003684 "damaged DNA binding" evidence=TAS]
[GO:0000718 "nucleotide-excision repair, DNA damage removal"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006281
"DNA repair" evidence=TAS] [GO:0006289 "nucleotide-excision repair"
evidence=TAS] Reactome:REACT_216 InterPro:IPR004871
InterPro:IPR015943 Pfam:PF03178 UniPathway:UPA00143 EMBL:U32986
GO:GO:0005737 GO:GO:0019048 GO:GO:0005654 GO:GO:0043161
GO:GO:0016055 Gene3D:2.130.10.10 GO:GO:0003684 EMBL:CH471076
GO:GO:0042787 GO:GO:0000075 GO:GO:0000718 EMBL:AP003108
GO:GO:0031464 PDB:2HYE PDB:4A0K PDBsum:2HYE PDBsum:4A0K PDB:4A0L
PDBsum:4A0L GO:GO:0031465 PDB:3I7P PDBsum:3I7P PDB:3I8C PDBsum:3I8C
PDB:3I89 PDBsum:3I89 PDB:3I7O PDBsum:3I7O PDB:3I8E PDBsum:3I8E
eggNOG:NOG247734 HOGENOM:HOG000007241 KO:K10610 OMA:CALGDGS
CTD:1642 HOVERGEN:HBG005460 OrthoDB:EOG4KPT91 EMBL:U18299
EMBL:L40326 EMBL:AJ002955 EMBL:AK312436 EMBL:AY960579 EMBL:BC011686
EMBL:BC050530 EMBL:BC051764 IPI:IPI00293464 PIR:I38908
RefSeq:NP_001914.3 UniGene:Hs.290758 PDB:2B5L PDB:2B5M PDB:2B5N
PDB:3E0C PDB:3EI1 PDB:3EI2 PDB:3EI3 PDB:3EI4 PDB:3I7H PDB:3I7K
PDB:3I7L PDB:3I7N PDB:4A08 PDB:4A09 PDB:4A0A PDB:4A0B PDB:4A11
PDB:4E54 PDB:4E5Z PDBsum:2B5L PDBsum:2B5M PDBsum:2B5N PDBsum:3E0C
PDBsum:3EI1 PDBsum:3EI2 PDBsum:3EI3 PDBsum:3EI4 PDBsum:3I7H
PDBsum:3I7K PDBsum:3I7L PDBsum:3I7N PDBsum:4A08 PDBsum:4A09
PDBsum:4A0A PDBsum:4A0B PDBsum:4A11 PDBsum:4E54 PDBsum:4E5Z
ProteinModelPortal:Q16531 SMR:Q16531 DIP:DIP-430N IntAct:Q16531
MINT:MINT-1134697 STRING:Q16531 PhosphoSite:Q16531 PaxDb:Q16531
PRIDE:Q16531 Ensembl:ENST00000301764 GeneID:1642 KEGG:hsa:1642
UCSC:uc001nrc.4 GeneCards:GC11M061066 H-InvDB:HIX0171380
HGNC:HGNC:2717 HPA:CAB032821 MIM:600045 neXtProt:NX_Q16531
PharmGKB:PA27187 InParanoid:Q16531 ChiTaRS:DDB1
EvolutionaryTrace:Q16531 GenomeRNAi:1642 NextBio:6750
ArrayExpress:Q16531 Bgee:Q16531 CleanEx:HS_DDB1
Genevestigator:Q16531 GermOnline:ENSG00000167986 Uniprot:Q16531
Length = 1140
Score = 125 (49.1 bits), Expect = 0.00013, P = 0.00013
Identities = 43/140 (30%), Positives = 69/140 (49%)
Query: 85 NQRQIVIALQGGRLIYFEMHP-VSDKKESDKKKIVRCAVNQRQIVIALQGGRLIYFEMHP 143
+Q+ I I RL+ E VS+ KE K I + N Q+V+A+ G L Y ++HP
Sbjct: 465 HQQLIQITSASVRLVSQEPKALVSEWKEPQAKNISVASCNSSQVVVAV-GRALYYLQIHP 523
Query: 144 ETGILDECSETIQMESEVLCMALSNAPSGEQMSRFLAVGL-ADNTVRLISLAPQDCLKQK 202
+ L + S T +ME EV C+ ++ +S A+GL D + R++ L P L K
Sbjct: 524 QE--LRQISHT-EMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKL-PSFELLHK 579
Query: 203 NLQGLPDLAESLVMIEMGAS 222
+ G + S++M +S
Sbjct: 580 EMLGGEIIPRSILMTTFESS 599
Score = 97 (39.2 bits), Expect = 0.00072, Sum P(2) = 0.00072
Identities = 29/106 (27%), Positives = 45/106 (42%)
Query: 1 EFDAYIVVSFSNATLVLSI-GETVEEVSGSGFYGTTPTLCCSAMGDNSIVQVYPDGIRHI 59
E D +V+SF T VL + GE VEE GF T C + ++Q+ +R +
Sbjct: 420 ETDDTLVLSFVGQTRVLMLNGEEVEETELMGFVDDQQTFFCGNVAHQQLIQITSASVRLV 479
Query: 60 GAKNTTWXXXXXXXXXXXXIVRCAVNQRQIVIALQGGRLIYFEMHP 105
+ V + N Q+V+A+ G L Y ++HP
Sbjct: 480 SQEPKALVSEWKEPQAKNISV-ASCNSSQVVVAV-GRALYYLQIHP 523
Score = 67 (28.6 bits), Expect = 0.00072, Sum P(2) = 0.00072
Identities = 32/126 (25%), Positives = 51/126 (40%)
Query: 156 QMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLV 215
+ME EV C+ ++ +S A+GL + I P L K + G + S++
Sbjct: 533 EMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSIL 592
Query: 216 MIEMGASDPTSSDEPAGPVTLGNLYLYVGLQNGALLRMVVDQTSGDLSDNRMRYLGSRPV 275
M +S YL L +GAL ++ +G LSD + LG++P
Sbjct: 593 MTTFESSH----------------YLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPT 636
Query: 276 KLFKIR 281
L R
Sbjct: 637 VLRTFR 642
>UNIPROTKB|P33194 [details] [associations]
symbol:DDB1 "DNA damage-binding protein 1" species:9534
"Chlorocebus aethiops" [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0031464 "Cul4A-RING
ubiquitin ligase complex" evidence=ISS] [GO:0031465 "Cul4B-RING
ubiquitin ligase complex" evidence=ISS] [GO:0043161 "proteasomal
ubiquitin-dependent protein catabolic process" evidence=ISS]
[GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS]
InterPro:IPR004871 InterPro:IPR015943 Pfam:PF03178
UniPathway:UPA00143 GO:GO:0005634 GO:GO:0005737 GO:GO:0043161
Gene3D:2.130.10.10 GO:GO:0003677 GO:GO:0006281 GO:GO:0016567
GO:GO:0031464 GO:GO:0031465 HOVERGEN:HBG005460 EMBL:L20216
PIR:S38777 PRIDE:P33194 Uniprot:P33194
Length = 1140
Score = 125 (49.1 bits), Expect = 0.00013, P = 0.00013
Identities = 43/140 (30%), Positives = 69/140 (49%)
Query: 85 NQRQIVIALQGGRLIYFEMHP-VSDKKESDKKKIVRCAVNQRQIVIALQGGRLIYFEMHP 143
+Q+ I I RL+ E VS+ KE K I + N Q+V+A+ G L Y ++HP
Sbjct: 465 HQQLIQITSASVRLVSQEPKALVSEWKEPQAKNISVASCNSSQVVVAV-GRALYYLQIHP 523
Query: 144 ETGILDECSETIQMESEVLCMALSNAPSGEQMSRFLAVGL-ADNTVRLISLAPQDCLKQK 202
+ L + S T +ME EV C+ ++ +S A+GL D + R++ L P L K
Sbjct: 524 QE--LRQISHT-EMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKL-PSFELLHK 579
Query: 203 NLQGLPDLAESLVMIEMGAS 222
+ G + S++M +S
Sbjct: 580 EMLGGEIIPRSILMTTFESS 599
Score = 97 (39.2 bits), Expect = 0.00072, Sum P(2) = 0.00072
Identities = 29/106 (27%), Positives = 45/106 (42%)
Query: 1 EFDAYIVVSFSNATLVLSI-GETVEEVSGSGFYGTTPTLCCSAMGDNSIVQVYPDGIRHI 59
E D +V+SF T VL + GE VEE GF T C + ++Q+ +R +
Sbjct: 420 ETDDTLVLSFVGQTRVLMLNGEEVEETELMGFVDDQQTFFCGNVAHQQLIQITSASVRLV 479
Query: 60 GAKNTTWXXXXXXXXXXXXIVRCAVNQRQIVIALQGGRLIYFEMHP 105
+ V + N Q+V+A+ G L Y ++HP
Sbjct: 480 SQEPKALVSEWKEPQAKNISV-ASCNSSQVVVAV-GRALYYLQIHP 523
Score = 67 (28.6 bits), Expect = 0.00072, Sum P(2) = 0.00072
Identities = 32/126 (25%), Positives = 51/126 (40%)
Query: 156 QMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLV 215
+ME EV C+ ++ +S A+GL + I P L K + G + S++
Sbjct: 533 EMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSIL 592
Query: 216 MIEMGASDPTSSDEPAGPVTLGNLYLYVGLQNGALLRMVVDQTSGDLSDNRMRYLGSRPV 275
M +S YL L +GAL ++ +G LSD + LG++P
Sbjct: 593 MTTFESSH----------------YLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPT 636
Query: 276 KLFKIR 281
L R
Sbjct: 637 VLRTFR 642
>UNIPROTKB|Q5R649 [details] [associations]
symbol:DDB1 "DNA damage-binding protein 1" species:9601
"Pongo abelii" [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0031464 "Cul4A-RING ubiquitin ligase
complex" evidence=ISS] [GO:0031465 "Cul4B-RING ubiquitin ligase
complex" evidence=ISS] [GO:0043161 "proteasomal ubiquitin-dependent
protein catabolic process" evidence=ISS] [GO:0080008 "Cul4-RING
ubiquitin ligase complex" evidence=ISS] InterPro:IPR004871
InterPro:IPR015943 Pfam:PF03178 UniPathway:UPA00143 GO:GO:0005634
GO:GO:0005737 GO:GO:0043161 Gene3D:2.130.10.10 GO:GO:0003677
GO:GO:0006281 GO:GO:0016567 GO:GO:0031464 GO:GO:0031465 KO:K10610
CTD:1642 HOVERGEN:HBG005460 HSSP:Q16531 EMBL:CR860647
RefSeq:NP_001126613.1 UniGene:Pab.18111 GeneID:100173610
KEGG:pon:100173610 InParanoid:Q5R649 Uniprot:Q5R649
Length = 1140
Score = 125 (49.1 bits), Expect = 0.00013, P = 0.00013
Identities = 43/140 (30%), Positives = 69/140 (49%)
Query: 85 NQRQIVIALQGGRLIYFEMHP-VSDKKESDKKKIVRCAVNQRQIVIALQGGRLIYFEMHP 143
+Q+ I I RL+ E VS+ KE K I + N Q+V+A+ G L Y ++HP
Sbjct: 465 HQQLIQITSASVRLVSQEPKALVSEWKEPQAKNISVASCNSSQVVVAV-GRALYYLQIHP 523
Query: 144 ETGILDECSETIQMESEVLCMALSNAPSGEQMSRFLAVGL-ADNTVRLISLAPQDCLKQK 202
+ L + S T +ME EV C+ ++ +S A+GL D + R++ L P L K
Sbjct: 524 QE--LRQISHT-EMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKL-PSFELLHK 579
Query: 203 NLQGLPDLAESLVMIEMGAS 222
+ G + S++M +S
Sbjct: 580 EMLGGEIIPRSILMTTFESS 599
Score = 97 (39.2 bits), Expect = 0.00072, Sum P(2) = 0.00072
Identities = 29/106 (27%), Positives = 45/106 (42%)
Query: 1 EFDAYIVVSFSNATLVLSI-GETVEEVSGSGFYGTTPTLCCSAMGDNSIVQVYPDGIRHI 59
E D +V+SF T VL + GE VEE GF T C + ++Q+ +R +
Sbjct: 420 ETDDTLVLSFVGQTRVLMLNGEEVEETELMGFVDDQQTFFCGNVAHQQLIQITSASVRLV 479
Query: 60 GAKNTTWXXXXXXXXXXXXIVRCAVNQRQIVIALQGGRLIYFEMHP 105
+ V + N Q+V+A+ G L Y ++HP
Sbjct: 480 SQEPKALVSEWKEPQAKNISV-ASCNSSQVVVAV-GRALYYLQIHP 523
Score = 67 (28.6 bits), Expect = 0.00072, Sum P(2) = 0.00072
Identities = 32/126 (25%), Positives = 51/126 (40%)
Query: 156 QMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLV 215
+ME EV C+ ++ +S A+GL + I P L K + G + S++
Sbjct: 533 EMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSIL 592
Query: 216 MIEMGASDPTSSDEPAGPVTLGNLYLYVGLQNGALLRMVVDQTSGDLSDNRMRYLGSRPV 275
M +S YL L +GAL ++ +G LSD + LG++P
Sbjct: 593 MTTFESSH----------------YLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPT 636
Query: 276 KLFKIR 281
L R
Sbjct: 637 VLRTFR 642
>UNIPROTKB|J9NVR7 [details] [associations]
symbol:DDB1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR004871
InterPro:IPR015943 Pfam:PF03178 GO:GO:0005634 Gene3D:2.130.10.10
GO:GO:0003676 GeneTree:ENSGT00530000063396 EMBL:AAEX03011677
Ensembl:ENSCAFT00000049486 Uniprot:J9NVR7
Length = 1084
Score = 124 (48.7 bits), Expect = 0.00016, P = 0.00016
Identities = 43/140 (30%), Positives = 69/140 (49%)
Query: 85 NQRQIVIALQGGRLIYFEMHP-VSDKKESDKKKIVRCAVNQRQIVIALQGGRLIYFEMHP 143
+Q+ I I RL+ E VS+ KE K I + N Q+V+A+ G L Y ++HP
Sbjct: 465 HQQLIQITSASVRLVSQEPKALVSEWKEPQGKNISVASCNSSQVVVAV-GRALYYLQIHP 523
Query: 144 ETGILDECSETIQMESEVLCMALSNAPSGEQMSRFLAVGL-ADNTVRLISLAPQDCLKQK 202
+ L + S T +ME EV C+ ++ +S A+GL D + R++ L P L K
Sbjct: 524 QE--LRQISHT-EMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKL-PSFELLHK 579
Query: 203 NLQGLPDLAESLVMIEMGAS 222
+ G + S++M +S
Sbjct: 580 EMLGGEIIPRSILMTTFESS 599
Score = 96 (38.9 bits), Expect = 0.00083, Sum P(2) = 0.00083
Identities = 29/106 (27%), Positives = 45/106 (42%)
Query: 1 EFDAYIVVSFSNATLVLSI-GETVEEVSGSGFYGTTPTLCCSAMGDNSIVQVYPDGIRHI 59
E D +V+SF T VL + GE VEE GF T C + ++Q+ +R +
Sbjct: 420 ETDDTLVLSFVGQTRVLMLNGEEVEETELMGFVDDQQTFFCGNVAHQQLIQITSASVRLV 479
Query: 60 GAKNTTWXXXXXXXXXXXXIVRCAVNQRQIVIALQGGRLIYFEMHP 105
+ V + N Q+V+A+ G L Y ++HP
Sbjct: 480 SQEPKALVSEWKEPQGKNISV-ASCNSSQVVVAV-GRALYYLQIHP 523
Score = 67 (28.6 bits), Expect = 0.00083, Sum P(2) = 0.00083
Identities = 32/126 (25%), Positives = 51/126 (40%)
Query: 156 QMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLV 215
+ME EV C+ ++ +S A+GL + I P L K + G + S++
Sbjct: 533 EMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSIL 592
Query: 216 MIEMGASDPTSSDEPAGPVTLGNLYLYVGLQNGALLRMVVDQTSGDLSDNRMRYLGSRPV 275
M +S YL L +GAL ++ +G LSD + LG++P
Sbjct: 593 MTTFESSH----------------YLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPT 636
Query: 276 KLFKIR 281
L R
Sbjct: 637 VLRTFR 642
>UNIPROTKB|E2R9E3 [details] [associations]
symbol:DDB1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043161 "proteasomal ubiquitin-dependent
protein catabolic process" evidence=IEA] [GO:0042787 "protein
ubiquitination involved in ubiquitin-dependent protein catabolic
process" evidence=IEA] [GO:0031465 "Cul4B-RING ubiquitin ligase
complex" evidence=IEA] [GO:0031464 "Cul4A-RING ubiquitin ligase
complex" evidence=IEA] [GO:0016055 "Wnt receptor signaling pathway"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0000075
"cell cycle checkpoint" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR004871 InterPro:IPR015943 Pfam:PF03178 GO:GO:0005634
GO:GO:0005737 GO:GO:0043161 GO:GO:0016055 Gene3D:2.130.10.10
GO:GO:0003676 GO:GO:0042787 GO:GO:0000075 GO:GO:0031464
GO:GO:0031465 KO:K10610 OMA:CALGDGS CTD:1642
GeneTree:ENSGT00530000063396 EMBL:AAEX03011677 RefSeq:XP_533275.2
Ensembl:ENSCAFT00000025824 GeneID:476067 KEGG:cfa:476067
NextBio:20851798 Uniprot:E2R9E3
Length = 1140
Score = 124 (48.7 bits), Expect = 0.00017, P = 0.00017
Identities = 43/140 (30%), Positives = 69/140 (49%)
Query: 85 NQRQIVIALQGGRLIYFEMHP-VSDKKESDKKKIVRCAVNQRQIVIALQGGRLIYFEMHP 143
+Q+ I I RL+ E VS+ KE K I + N Q+V+A+ G L Y ++HP
Sbjct: 465 HQQLIQITSASVRLVSQEPKALVSEWKEPQGKNISVASCNSSQVVVAV-GRALYYLQIHP 523
Query: 144 ETGILDECSETIQMESEVLCMALSNAPSGEQMSRFLAVGL-ADNTVRLISLAPQDCLKQK 202
+ L + S T +ME EV C+ ++ +S A+GL D + R++ L P L K
Sbjct: 524 QE--LRQISHT-EMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKL-PSFELLHK 579
Query: 203 NLQGLPDLAESLVMIEMGAS 222
+ G + S++M +S
Sbjct: 580 EMLGGEIIPRSILMTTFESS 599
Score = 96 (38.9 bits), Expect = 0.00092, Sum P(2) = 0.00092
Identities = 29/106 (27%), Positives = 45/106 (42%)
Query: 1 EFDAYIVVSFSNATLVLSI-GETVEEVSGSGFYGTTPTLCCSAMGDNSIVQVYPDGIRHI 59
E D +V+SF T VL + GE VEE GF T C + ++Q+ +R +
Sbjct: 420 ETDDTLVLSFVGQTRVLMLNGEEVEETELMGFVDDQQTFFCGNVAHQQLIQITSASVRLV 479
Query: 60 GAKNTTWXXXXXXXXXXXXIVRCAVNQRQIVIALQGGRLIYFEMHP 105
+ V + N Q+V+A+ G L Y ++HP
Sbjct: 480 SQEPKALVSEWKEPQGKNISV-ASCNSSQVVVAV-GRALYYLQIHP 523
Score = 67 (28.6 bits), Expect = 0.00092, Sum P(2) = 0.00092
Identities = 32/126 (25%), Positives = 51/126 (40%)
Query: 156 QMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLV 215
+ME EV C+ ++ +S A+GL + I P L K + G + S++
Sbjct: 533 EMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSIL 592
Query: 216 MIEMGASDPTSSDEPAGPVTLGNLYLYVGLQNGALLRMVVDQTSGDLSDNRMRYLGSRPV 275
M +S YL L +GAL ++ +G LSD + LG++P
Sbjct: 593 MTTFESSH----------------YLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPT 636
Query: 276 KLFKIR 281
L R
Sbjct: 637 VLRTFR 642
>MGI|MGI:1202384 [details] [associations]
symbol:Ddb1 "damage specific DNA binding protein 1"
species:10090 "Mus musculus" [GO:0000075 "cell cycle checkpoint"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003684 "damaged DNA
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0016055 "Wnt receptor signaling pathway"
evidence=IDA] [GO:0031464 "Cul4A-RING ubiquitin ligase complex"
evidence=ISO] [GO:0031465 "Cul4B-RING ubiquitin ligase complex"
evidence=ISO] [GO:0042787 "protein ubiquitination involved in
ubiquitin-dependent protein catabolic process" evidence=ISO]
[GO:0043161 "proteasomal ubiquitin-dependent protein catabolic
process" evidence=ISO] [GO:0080008 "Cul4-RING ubiquitin ligase
complex" evidence=ISO] InterPro:IPR004871 InterPro:IPR015943
Pfam:PF03178 UniPathway:UPA00143 MGI:MGI:1202384 GO:GO:0005634
GO:GO:0005737 GO:GO:0043161 GO:GO:0016055 Gene3D:2.130.10.10
GO:GO:0003684 GO:GO:0006281 GO:GO:0042787 GO:GO:0000075
GO:GO:0031464 GO:GO:0031465 eggNOG:NOG247734 KO:K10610 OMA:CALGDGS
CTD:1642 GeneTree:ENSGT00530000063396 HOVERGEN:HBG005460
HSSP:Q16531 ChiTaRS:DDB1 EMBL:AB026432 EMBL:AF159853 EMBL:AK146522
EMBL:AK152228 EMBL:AK154303 EMBL:AK155020 EMBL:AK155920
EMBL:AK157491 EMBL:BC002210 EMBL:BC009661 IPI:IPI00316740
PIR:JC7152 RefSeq:NP_056550.1 UniGene:Mm.289915 UniGene:Mm.466856
ProteinModelPortal:Q3U1J4 SMR:Q3U1J4 IntAct:Q3U1J4 STRING:Q3U1J4
PaxDb:Q3U1J4 PRIDE:Q3U1J4 Ensembl:ENSMUST00000025649 GeneID:13194
KEGG:mmu:13194 UCSC:uc008gqm.1 InParanoid:Q3U1J4 NextBio:283320
Bgee:Q3U1J4 CleanEx:MM_DDB1 Genevestigator:Q3U1J4 Uniprot:Q3U1J4
Length = 1140
Score = 124 (48.7 bits), Expect = 0.00017, P = 0.00017
Identities = 43/140 (30%), Positives = 69/140 (49%)
Query: 85 NQRQIVIALQGGRLIYFEMHP-VSDKKESDKKKIVRCAVNQRQIVIALQGGRLIYFEMHP 143
+Q+ I I RL+ E VS+ KE K I + N Q+V+A+ G L Y ++HP
Sbjct: 465 HQQLIQITSASVRLVSQEPKALVSEWKEPQGKNISVASCNSSQVVVAV-GRALYYLQIHP 523
Query: 144 ETGILDECSETIQMESEVLCMALSNAPSGEQMSRFLAVGL-ADNTVRLISLAPQDCLKQK 202
+ L + S T +ME EV C+ ++ +S A+GL D + R++ L P L K
Sbjct: 524 QE--LRQISHT-EMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKL-PSFELLHK 579
Query: 203 NLQGLPDLAESLVMIEMGAS 222
+ G + S++M +S
Sbjct: 580 EMLGGEIIPRSILMTTFESS 599
Score = 96 (38.9 bits), Expect = 0.00092, Sum P(2) = 0.00092
Identities = 29/106 (27%), Positives = 45/106 (42%)
Query: 1 EFDAYIVVSFSNATLVLSI-GETVEEVSGSGFYGTTPTLCCSAMGDNSIVQVYPDGIRHI 59
E D +V+SF T VL + GE VEE GF T C + ++Q+ +R +
Sbjct: 420 ETDDTLVLSFVGQTRVLMLNGEEVEETELMGFVDDQQTFFCGNVAHQQLIQITSASVRLV 479
Query: 60 GAKNTTWXXXXXXXXXXXXIVRCAVNQRQIVIALQGGRLIYFEMHP 105
+ V + N Q+V+A+ G L Y ++HP
Sbjct: 480 SQEPKALVSEWKEPQGKNISV-ASCNSSQVVVAV-GRALYYLQIHP 523
Score = 67 (28.6 bits), Expect = 0.00092, Sum P(2) = 0.00092
Identities = 32/126 (25%), Positives = 51/126 (40%)
Query: 156 QMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLV 215
+ME EV C+ ++ +S A+GL + I P L K + G + S++
Sbjct: 533 EMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSIL 592
Query: 216 MIEMGASDPTSSDEPAGPVTLGNLYLYVGLQNGALLRMVVDQTSGDLSDNRMRYLGSRPV 275
M +S YL L +GAL ++ +G LSD + LG++P
Sbjct: 593 MTTFESSH----------------YLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPT 636
Query: 276 KLFKIR 281
L R
Sbjct: 637 VLRTFR 642
>SGD|S000004513 [details] [associations]
symbol:RSE1 "Protein involved in pre-mRNA splicing"
species:4932 "Saccharomyces cerevisiae" [GO:0005686 "U2 snRNP"
evidence=IDA;IPI] [GO:0000245 "spliceosomal complex assembly"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IGI;IMP;IPI] [GO:0007049 "cell cycle" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030620 "U2 snRNA binding" evidence=IPI]
[GO:0071004 "U2-type prespliceosome" evidence=IDA]
InterPro:IPR004871 Pfam:PF03178 SGD:S000004513 EMBL:BK006946
GO:GO:0007049 EMBL:Z47816 GO:GO:0000245 GO:GO:0005686 GO:GO:0071004
GeneTree:ENSGT00530000063396 GO:GO:0030620 KO:K12830
OrthoDB:EOG4FR40R PIR:S50943 RefSeq:NP_013663.1
ProteinModelPortal:Q04693 DIP:DIP-856N IntAct:Q04693
MINT:MINT-368995 STRING:Q04693 PaxDb:Q04693 PeptideAtlas:Q04693
EnsemblFungi:YML049C GeneID:854956 KEGG:sce:YML049C CYGD:YML049c
eggNOG:KOG1898 HOGENOM:HOG000066036 OMA:DIHESVT NextBio:978033
Genevestigator:Q04693 GermOnline:YML049C Uniprot:Q04693
Length = 1361
Score = 123 (48.4 bits), Expect = 0.00027, P = 0.00027
Identities = 42/169 (24%), Positives = 84/169 (49%)
Query: 116 KIVRCAVNQR-QIVIALQGGRLIYFEMHPETGILDECSETIQMESEVLCMALSNAPSGEQ 174
+IV CA + + Q++I+L L+YF++ + L E + ++++ +A+ Q
Sbjct: 631 RIV-CATSSKTQLIISLSNYELVYFKIDVSSDSLIELTTHPELDTMPSKVAIVQ---DTQ 686
Query: 175 MSRFLAVGLADNTVRLISLAPQ--DCLKQKNLQGLPDLAESLVMIEMGASDPTSSDEPAG 232
+ LA+ + ++++SL Q D L +LQ + + ++M+ D
Sbjct: 687 HADLLAIADNEGMIKIMSLKDQKEDFLTVISLQLVSEKISDMIMVR---------DS--- 734
Query: 233 PVTLGNLYLYVGLQNGALLRMVVDQTSGDLSDNRMRYLGSRPVKLFKIR 281
++G L L+VGL+NG ++ + G +D + R+LG +PV L +R
Sbjct: 735 --SIGQLNLHVGLENGVYMKFHIGDVDGSFTDIKRRFLGLKPVSLSYLR 781
>RGD|621889 [details] [associations]
symbol:Ddb1 "damage-specific DNA binding protein 1, 127kDa"
species:10116 "Rattus norvegicus" [GO:0000075 "cell cycle
checkpoint" evidence=IEA;ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003684 "damaged DNA binding" evidence=IMP]
[GO:0005575 "cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA;ISO;ISS] [GO:0005737 "cytoplasm" evidence=IEA;ISO;ISS]
[GO:0006281 "DNA repair" evidence=TAS] [GO:0016055 "Wnt receptor
signaling pathway" evidence=IEA;ISO] [GO:0016567 "protein
ubiquitination" evidence=IEA] [GO:0031464 "Cul4A-RING ubiquitin
ligase complex" evidence=IEA;ISO;ISS] [GO:0031465 "Cul4B-RING
ubiquitin ligase complex" evidence=IEA;ISO;ISS] [GO:0042787
"protein ubiquitination involved in ubiquitin-dependent protein
catabolic process" evidence=IEA;ISO] [GO:0043161 "proteasomal
ubiquitin-dependent protein catabolic process"
evidence=IEA;ISO;ISS] [GO:0080008 "Cul4-RING ubiquitin ligase
complex" evidence=ISO;ISS] InterPro:IPR004871 InterPro:IPR015943
Pfam:PF03178 UniPathway:UPA00143 RGD:621889 GO:GO:0005634
GO:GO:0005737 GO:GO:0043161 GO:GO:0016055 Gene3D:2.130.10.10
GO:GO:0003684 GO:GO:0006281 GO:GO:0042787 GO:GO:0000075
GO:GO:0031464 GO:GO:0031465 eggNOG:NOG247734 HOGENOM:HOG000007241
HOVERGEN:HBG005460 HSSP:Q16531 EMBL:AJ277077 IPI:IPI00324451
UniGene:Rn.8402 IntAct:Q9ESW0 MINT:MINT-4784948 STRING:Q9ESW0
PhosphoSite:Q9ESW0 PRIDE:Q9ESW0 UCSC:RGD:621889 InParanoid:Q9ESW0
ArrayExpress:Q9ESW0 Genevestigator:Q9ESW0 Uniprot:Q9ESW0
Length = 1140
Score = 122 (48.0 bits), Expect = 0.00028, P = 0.00028
Identities = 43/140 (30%), Positives = 69/140 (49%)
Query: 85 NQRQIVIALQGGRLIYFEMHP-VSDKKESDKKKIVRCAVNQRQIVIALQGGRLIYFEMHP 143
+Q+ I I RL+ E VS+ KE K I + N Q+V+A+ G L Y ++HP
Sbjct: 465 HQQLIQITSASVRLVSQEPKALVSEWKEPRAKNISVASCNSSQVVVAV-GRALYYLQIHP 523
Query: 144 ETGILDECSETIQMESEVLCMALSNAPSGEQMSRFLAVGL-ADNTVRLISLAPQDCLKQK 202
+ L + S T +ME EV C+ ++ +S A+GL D + R++ L P L K
Sbjct: 524 QE--LRQISHT-EMEHEVACLDVTPLGDSNGLSPLCAIGLWTDISARILKL-PSFELLHK 579
Query: 203 NLQGLPDLAESLVMIEMGAS 222
+ G + S++M +S
Sbjct: 580 EMLGGEIIPRSILMTTFESS 599
Score = 97 (39.2 bits), Expect = 0.00091, Sum P(2) = 0.00091
Identities = 29/106 (27%), Positives = 45/106 (42%)
Query: 1 EFDAYIVVSFSNATLVLSI-GETVEEVSGSGFYGTTPTLCCSAMGDNSIVQVYPDGIRHI 59
E D +V+SF T VL + GE VEE GF T C + ++Q+ +R +
Sbjct: 420 ETDDTLVLSFVGQTRVLMLNGEEVEETELMGFVDDQQTFFCGNVAHQQLIQITSASVRLV 479
Query: 60 GAKNTTWXXXXXXXXXXXXIVRCAVNQRQIVIALQGGRLIYFEMHP 105
+ V + N Q+V+A+ G L Y ++HP
Sbjct: 480 SQEPKALVSEWKEPRAKNISV-ASCNSSQVVVAV-GRALYYLQIHP 523
Score = 66 (28.3 bits), Expect = 0.00091, Sum P(2) = 0.00091
Identities = 32/126 (25%), Positives = 51/126 (40%)
Query: 156 QMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLV 215
+ME EV C+ ++ +S A+GL + I P L K + G + S++
Sbjct: 533 EMEHEVACLDVTPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSIL 592
Query: 216 MIEMGASDPTSSDEPAGPVTLGNLYLYVGLQNGALLRMVVDQTSGDLSDNRMRYLGSRPV 275
M +S YL L +GAL ++ +G LSD + LG++P
Sbjct: 593 MTTFESSH----------------YLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPT 636
Query: 276 KLFKIR 281
L R
Sbjct: 637 VLRTFR 642
>UNIPROTKB|F1NVV3 [details] [associations]
symbol:DDB1 "DNA damage-binding protein 1" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR004871
InterPro:IPR015943 Pfam:PF03178 GO:GO:0005634 Gene3D:2.130.10.10
GO:GO:0003676 GeneTree:ENSGT00530000063396 EMBL:AADN02017118
EMBL:AADN02017119 IPI:IPI00821712 Ensembl:ENSGALT00000040604
ArrayExpress:F1NVV3 Uniprot:F1NVV3
Length = 1119
Score = 118 (46.6 bits), Expect = 0.00078, P = 0.00078
Identities = 43/140 (30%), Positives = 67/140 (47%)
Query: 85 NQRQIVIALQGGRLIYFEMHP-VSDKKESDKKKIVRCAVNQRQIVIALQGGRLIYFEMHP 143
+Q+ I I RL+ E VS+ KE + K I + N Q+V+A+ G L Y E+ P
Sbjct: 445 HQQLIQITSASVRLVSQEPKALVSEWKEPNGKNISVASCNSNQVVVAV-GRALYYLEIRP 503
Query: 144 ETGILDECSETIQMESEVLCMALSNAPSGEQMSRFLAVGL-ADNTVRLISLAPQDCLKQK 202
+ C+E ME EV C+ ++ MS A+GL D + R++ L P L K
Sbjct: 504 QELRQINCTE---MEHEVACLDITPLGDTNGMSPLCAIGLWTDISARILKL-PSFELLHK 559
Query: 203 NLQGLPDLAESLVMIEMGAS 222
+ G + S++M +S
Sbjct: 560 EMLGGEIIPRSILMTTFESS 579
Score = 97 (39.2 bits), Expect = 0.00055, Sum P(2) = 0.00055
Identities = 29/106 (27%), Positives = 45/106 (42%)
Query: 1 EFDAYIVVSFSNATLVLSI-GETVEEVSGSGFYGTTPTLCCSAMGDNSIVQVYPDGIRHI 59
E D +V+SF T VL + GE VEE +GF T C + ++Q+ +R +
Sbjct: 400 EMDNMLVLSFVGQTRVLMLNGEEVEETELTGFVDDQQTFFCGNVAHQQLIQITSASVRLV 459
Query: 60 GAKNTTWXXXXXXXXXXXXIVRCAVNQRQIVIALQGGRLIYFEMHP 105
+ V + N Q+V+A+ G L Y E+ P
Sbjct: 460 SQEPKALVSEWKEPNGKNISV-ASCNSNQVVVAV-GRALYYLEIRP 503
Score = 68 (29.0 bits), Expect = 0.00055, Sum P(2) = 0.00055
Identities = 33/126 (26%), Positives = 50/126 (39%)
Query: 156 QMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLV 215
+ME EV C+ ++ MS A+GL + I P L K + G + S++
Sbjct: 513 EMEHEVACLDITPLGDTNGMSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSIL 572
Query: 216 MIEMGASDPTSSDEPAGPVTLGNLYLYVGLQNGALLRMVVDQTSGDLSDNRMRYLGSRPV 275
M +S YL L +GAL + +G LSD + LG++P
Sbjct: 573 MTTFESSH----------------YLLCALGDGALFYFGLSLETGLLSDRKKVTLGTQPT 616
Query: 276 KLFKIR 281
L R
Sbjct: 617 VLRTFR 622
>UNIPROTKB|F1P4I8 [details] [associations]
symbol:DDB1 "DNA damage-binding protein 1" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR004871
InterPro:IPR015943 Pfam:PF03178 GO:GO:0005634 Gene3D:2.130.10.10
GO:GO:0003676 GeneTree:ENSGT00530000063396 EMBL:AADN02017118
EMBL:AADN02017119 IPI:IPI00818299 Ensembl:ENSGALT00000008352
ArrayExpress:F1P4I8 Uniprot:F1P4I8
Length = 1120
Score = 118 (46.6 bits), Expect = 0.00078, P = 0.00078
Identities = 43/140 (30%), Positives = 67/140 (47%)
Query: 85 NQRQIVIALQGGRLIYFEMHP-VSDKKESDKKKIVRCAVNQRQIVIALQGGRLIYFEMHP 143
+Q+ I I RL+ E VS+ KE + K I + N Q+V+A+ G L Y E+ P
Sbjct: 445 HQQLIQITSASVRLVSQEPKALVSEWKEPNGKNISVASCNSNQVVVAV-GRALYYLEIRP 503
Query: 144 ETGILDECSETIQMESEVLCMALSNAPSGEQMSRFLAVGL-ADNTVRLISLAPQDCLKQK 202
+ C+E ME EV C+ ++ MS A+GL D + R++ L P L K
Sbjct: 504 QELRQINCTE---MEHEVACLDITPLGDTNGMSPLCAIGLWTDISARILKL-PSFELLHK 559
Query: 203 NLQGLPDLAESLVMIEMGAS 222
+ G + S++M +S
Sbjct: 560 EMLGGEIIPRSILMTTFESS 579
Score = 97 (39.2 bits), Expect = 0.00055, Sum P(2) = 0.00055
Identities = 29/106 (27%), Positives = 45/106 (42%)
Query: 1 EFDAYIVVSFSNATLVLSI-GETVEEVSGSGFYGTTPTLCCSAMGDNSIVQVYPDGIRHI 59
E D +V+SF T VL + GE VEE +GF T C + ++Q+ +R +
Sbjct: 400 EMDNMLVLSFVGQTRVLMLNGEEVEETELTGFVDDQQTFFCGNVAHQQLIQITSASVRLV 459
Query: 60 GAKNTTWXXXXXXXXXXXXIVRCAVNQRQIVIALQGGRLIYFEMHP 105
+ V + N Q+V+A+ G L Y E+ P
Sbjct: 460 SQEPKALVSEWKEPNGKNISV-ASCNSNQVVVAV-GRALYYLEIRP 503
Score = 68 (29.0 bits), Expect = 0.00055, Sum P(2) = 0.00055
Identities = 33/126 (26%), Positives = 50/126 (39%)
Query: 156 QMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLV 215
+ME EV C+ ++ MS A+GL + I P L K + G + S++
Sbjct: 513 EMEHEVACLDITPLGDTNGMSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSIL 572
Query: 216 MIEMGASDPTSSDEPAGPVTLGNLYLYVGLQNGALLRMVVDQTSGDLSDNRMRYLGSRPV 275
M +S YL L +GAL + +G LSD + LG++P
Sbjct: 573 MTTFESSH----------------YLLCALGDGALFYFGLSLETGLLSDRKKVTLGTQPT 616
Query: 276 KLFKIR 281
L R
Sbjct: 617 VLRTFR 622
>UNIPROTKB|F1NVV2 [details] [associations]
symbol:DDB1 "DNA damage-binding protein 1" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000075 "cell cycle
checkpoint" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0016055 "Wnt receptor signaling pathway" evidence=IEA]
[GO:0031464 "Cul4A-RING ubiquitin ligase complex" evidence=IEA]
[GO:0031465 "Cul4B-RING ubiquitin ligase complex" evidence=IEA]
[GO:0042787 "protein ubiquitination involved in ubiquitin-dependent
protein catabolic process" evidence=IEA] [GO:0043161 "proteasomal
ubiquitin-dependent protein catabolic process" evidence=IEA]
InterPro:IPR004871 InterPro:IPR015943 Pfam:PF03178 GO:GO:0005634
GO:GO:0005737 GO:GO:0043161 GO:GO:0016055 Gene3D:2.130.10.10
GO:GO:0003676 GO:GO:0042787 GO:GO:0000075 GO:GO:0031464
GO:GO:0031465 OMA:CALGDGS GeneTree:ENSGT00530000063396
IPI:IPI00597295 EMBL:AADN02017118 EMBL:AADN02017119
Ensembl:ENSGALT00000040605 ArrayExpress:F1NVV2 Uniprot:F1NVV2
Length = 1123
Score = 118 (46.6 bits), Expect = 0.00079, P = 0.00079
Identities = 43/140 (30%), Positives = 67/140 (47%)
Query: 85 NQRQIVIALQGGRLIYFEMHP-VSDKKESDKKKIVRCAVNQRQIVIALQGGRLIYFEMHP 143
+Q+ I I RL+ E VS+ KE + K I + N Q+V+A+ G L Y E+ P
Sbjct: 445 HQQLIQITSASVRLVSQEPKALVSEWKEPNGKNISVASCNSNQVVVAV-GRALYYLEIRP 503
Query: 144 ETGILDECSETIQMESEVLCMALSNAPSGEQMSRFLAVGL-ADNTVRLISLAPQDCLKQK 202
+ C+E ME EV C+ ++ MS A+GL D + R++ L P L K
Sbjct: 504 QELRQINCTE---MEHEVACLDITPLGDTNGMSPLCAIGLWTDISARILKL-PSFELLHK 559
Query: 203 NLQGLPDLAESLVMIEMGAS 222
+ G + S++M +S
Sbjct: 560 EMLGGEIIPRSILMTTFESS 579
Score = 97 (39.2 bits), Expect = 0.00055, Sum P(2) = 0.00055
Identities = 29/106 (27%), Positives = 45/106 (42%)
Query: 1 EFDAYIVVSFSNATLVLSI-GETVEEVSGSGFYGTTPTLCCSAMGDNSIVQVYPDGIRHI 59
E D +V+SF T VL + GE VEE +GF T C + ++Q+ +R +
Sbjct: 400 EMDNMLVLSFVGQTRVLMLNGEEVEETELTGFVDDQQTFFCGNVAHQQLIQITSASVRLV 459
Query: 60 GAKNTTWXXXXXXXXXXXXIVRCAVNQRQIVIALQGGRLIYFEMHP 105
+ V + N Q+V+A+ G L Y E+ P
Sbjct: 460 SQEPKALVSEWKEPNGKNISV-ASCNSNQVVVAV-GRALYYLEIRP 503
Score = 68 (29.0 bits), Expect = 0.00055, Sum P(2) = 0.00055
Identities = 33/126 (26%), Positives = 50/126 (39%)
Query: 156 QMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLV 215
+ME EV C+ ++ MS A+GL + I P L K + G + S++
Sbjct: 513 EMEHEVACLDITPLGDTNGMSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSIL 572
Query: 216 MIEMGASDPTSSDEPAGPVTLGNLYLYVGLQNGALLRMVVDQTSGDLSDNRMRYLGSRPV 275
M +S YL L +GAL + +G LSD + LG++P
Sbjct: 573 MTTFESSH----------------YLLCALGDGALFYFGLSLETGLLSDRKKVTLGTQPT 616
Query: 276 KLFKIR 281
L R
Sbjct: 617 VLRTFR 622
>UNIPROTKB|Q805F9 [details] [associations]
symbol:DDB1 "DNA damage-binding protein 1" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0016567
"protein ubiquitination" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS] [GO:0080008
"Cul4-RING ubiquitin ligase complex" evidence=ISS] [GO:0031465
"Cul4B-RING ubiquitin ligase complex" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0043161 "proteasomal ubiquitin-dependent protein catabolic
process" evidence=ISS] [GO:0031464 "Cul4A-RING ubiquitin ligase
complex" evidence=ISS] InterPro:IPR004871 InterPro:IPR015943
Pfam:PF03178 UniPathway:UPA00143 GO:GO:0005737 GO:GO:0005654
GO:GO:0043161 Gene3D:2.130.10.10 GO:GO:0003677 GO:GO:0006281
GO:GO:0016567 Reactome:REACT_115612 GO:GO:0031464 GO:GO:0031465
eggNOG:NOG247734 HOGENOM:HOG000007241 KO:K10610 CTD:1642
HOVERGEN:HBG005460 OrthoDB:EOG4KPT91 HSSP:Q16531 EMBL:AB074298
EMBL:AJ719779 IPI:IPI00597295 RefSeq:NP_989547.1 UniGene:Gga.12977
STRING:Q805F9 PRIDE:Q805F9 GeneID:374050 KEGG:gga:374050
NextBio:20813572 Uniprot:Q805F9
Length = 1140
Score = 118 (46.6 bits), Expect = 0.00080, P = 0.00080
Identities = 43/140 (30%), Positives = 67/140 (47%)
Query: 85 NQRQIVIALQGGRLIYFEMHP-VSDKKESDKKKIVRCAVNQRQIVIALQGGRLIYFEMHP 143
+Q+ I I RL+ E VS+ KE + K I + N Q+V+A+ G L Y E+ P
Sbjct: 465 HQQLIQITSASVRLVSQEPKALVSEWKEPNGKNISVASCNSNQVVVAV-GRALYYLEIRP 523
Query: 144 ETGILDECSETIQMESEVLCMALSNAPSGEQMSRFLAVGL-ADNTVRLISLAPQDCLKQK 202
+ C+E ME EV C+ ++ MS A+GL D + R++ L P L K
Sbjct: 524 QELRQINCTE---MEHEVACLDITPLGDTNGMSPLCAIGLWTDISARILKL-PSFELLHK 579
Query: 203 NLQGLPDLAESLVMIEMGAS 222
+ G + S++M +S
Sbjct: 580 EMLGGEIIPRSILMTTFESS 599
Score = 97 (39.2 bits), Expect = 0.00057, Sum P(2) = 0.00057
Identities = 29/106 (27%), Positives = 45/106 (42%)
Query: 1 EFDAYIVVSFSNATLVLSI-GETVEEVSGSGFYGTTPTLCCSAMGDNSIVQVYPDGIRHI 59
E D +V+SF T VL + GE VEE +GF T C + ++Q+ +R +
Sbjct: 420 EMDNMLVLSFVGQTRVLMLNGEEVEETELTGFVDDQQTFFCGNVAHQQLIQITSASVRLV 479
Query: 60 GAKNTTWXXXXXXXXXXXXIVRCAVNQRQIVIALQGGRLIYFEMHP 105
+ V + N Q+V+A+ G L Y E+ P
Sbjct: 480 SQEPKALVSEWKEPNGKNISV-ASCNSNQVVVAV-GRALYYLEIRP 523
Score = 68 (29.0 bits), Expect = 0.00057, Sum P(2) = 0.00057
Identities = 33/126 (26%), Positives = 50/126 (39%)
Query: 156 QMESEVLCMALSNAPSGEQMSRFLAVGLADNTVRLISLAPQDCLKQKNLQGLPDLAESLV 215
+ME EV C+ ++ MS A+GL + I P L K + G + S++
Sbjct: 533 EMEHEVACLDITPLGDTNGMSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSIL 592
Query: 216 MIEMGASDPTSSDEPAGPVTLGNLYLYVGLQNGALLRMVVDQTSGDLSDNRMRYLGSRPV 275
M +S YL L +GAL + +G LSD + LG++P
Sbjct: 593 MTTFESSH----------------YLLCALGDGALFYFGLSLETGLLSDRKKVTLGTQPT 636
Query: 276 KLFKIR 281
L R
Sbjct: 637 VLRTFR 642
>ZFIN|ZDB-GENE-040709-2 [details] [associations]
symbol:cpsf1 "cleavage and polyadenylation specific
factor 1" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006378 "mRNA polyadenylation" evidence=IMP] [GO:0060216
"definitive hemopoiesis" evidence=IMP] InterPro:IPR004871
Pfam:PF03178 ZFIN:ZDB-GENE-040709-2 GO:GO:0005634 GO:GO:0006378
GO:GO:0003676 GeneTree:ENSGT00550000075040 GO:GO:0060216
EMBL:CU467825 IPI:IPI00932321 Ensembl:ENSDART00000110017
ArrayExpress:F1QCJ8 Bgee:F1QCJ8 Uniprot:F1QCJ8
Length = 1451
Score = 119 (46.9 bits), Expect = 0.00081, P = 0.00081
Identities = 43/175 (24%), Positives = 77/175 (44%)
Query: 5 YIVVSFSNATLVLSIGETVEEVSGSGFYGTTPTLCCSAMGDNS-IVQVYPDGIRHIGAKN 63
++++S ++T++L G+ + E+ SGF PT+ +GDN I+QV P GIR + N
Sbjct: 577 FLILSREDSTMILQTGQEIMELDTSGFATQGPTVYAGNIGDNKYIIQVSPMGIRLLEGVN 636
Query: 64 TTWXXXXXXXXXXXXIVRCAVNQRQIVIALQGGRLIYFEMHPVSDKKESDKKKIVRCAVN 123
IV C+V +VI G + F + S +S + + + ++
Sbjct: 637 QL---HFIPVDLGSPIVHCSVADPYVVIMTAEGVVTMFVLKNDSYMGKSHRLALQKPQIH 693
Query: 124 QRQIVIALQGGRLI--YFEMHPETGIL--DECSETIQMESEVLCMALSNAPSGEQ 174
+ VI L R + F + L +E + E+E + +SN E+
Sbjct: 694 TQSRVITLCAYRDVSGMFTTENKVSFLAKEEIAIRTNSETETIIQDISNTVDDEE 748
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.135 0.391 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 290 278 0.00081 115 3 11 22 0.36 34
33 0.41 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 41
No. of states in DFA: 593 (63 KB)
Total size of DFA: 179 KB (2103 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 21.28u 0.15s 21.43t Elapsed: 00:00:01
Total cpu time: 21.29u 0.15s 21.44t Elapsed: 00:00:02
Start: Thu Aug 15 14:35:35 2013 End: Thu Aug 15 14:35:37 2013